LOCUS       DADMHM010000001        96360 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.001, whole genome shotgun sequence.
ACCESSION   DADMHM010000001 DADMHM010000000
VERSION     DADMHM010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 96360)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 96360)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..96360
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.001"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(51..1064)
                     /gene="galE"
                     /locus_tag="JN125_000001"
     CDS             complement(51..1064)
                     /gene="galE"
                     /locus_tag="JN125_000001"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003037163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HAY8869913.1"
                     /translation="MTILVTGGAGYIGSHTVLSLLSYGKNVVVLDNLSNSSSKSLERV
                     EKICGRRPLFYHGDVRDRKKLKHIFQYHDITDVIHFAGLKAVAESVSNPLEYYDHNVN
                     GTIVLLEEMMRAGVISFIFSSSATVYGKPETIPLKEDSSVGGTTNPYGFSKLIVERVL
                     KDIALAEPTMRITILRYFNPVGAHSSGLLGEDPNGVPNNLIPYITQVAIGNLKYLSVF
                     GNDYPTPDGTGIRDYIHVMDLAEGHIAALEHRNFGGNYKVYNLGTGVGYSVLDVINTF
                     KRCTGIDIPYCFKPRRVGDIAECWSDPSLAFLELGWSSRYDLDTMIIDSWRWQKNNPK
                     GYK"
     gene            complement(1248..2183)
                     /locus_tag="JN125_000002"
                     /pseudo
     CDS             complement(1248..2183)
                     /locus_tag="JN125_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004152817.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(2996..4077)
                     /gene="wzy"
                     /locus_tag="JN125_000003"
                     /pseudo
     CDS             complement(2996..4077)
                     /gene="wzy"
                     /locus_tag="JN125_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_158642095.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="O143 family O-antigen polymerase"
     gene            complement(4074..5189)
                     /locus_tag="JN125_000004"
     CDS             complement(4074..5189)
                     /locus_tag="JN125_000004"
                     /inference="COORDINATES: protein
                     motif:HMM:NF024868.1,HMM:NF025072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HAY8869914.1"
                     /translation="MRVLVFGPMISGHISNWIHGSKEYIDYRIVTLHYDKSISENVGI
                     GEIYKIPRLTKTKFDFIYAPVFLLFYFFLLKPELVHVHFFSSYGLISCVLPRKVKKIL
                     SVWGSDINNTIKKRGILGKIYVKAMKSFCVVNSPARHITNKIISYFNVNQERIHTFQY
                     GVDVGFFSDEKTSSIRDDKCITITSVRNWDNIYNIESFLEAVIDMKDYDCKGYFFNIN
                     ILGRSSSKTTHDKIIELTKKCEGDNYKVNLIGFIQKEELRSILHKSDFVLSIPSNDGA
                     PLSLMEGVLCNCFPIVSDIDANRELLGNHAMYLNLHDDIDMKSVFSRCVKLIDSNQYR
                     CSIEYNRDTIIKMFDINKNTKRMVDIYYRVVSQKEFL"
     gene            complement(5186..6079)
                     /locus_tag="JN125_000005"
     CDS             complement(5186..6079)
                     /locus_tag="JN125_000005"
                     /inference="COORDINATES: protein motif:HMM:NF012745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HAY8869915.1"
                     /translation="MQKLAVIMTYYNESYIILKKAVDSTLQDLERLEKKNVKYKLIIG
                     VDRRNEDIPHIESLYLKEVSARNDVCVVFFNENEGLAASLNKLIFGACNGYDFIARMD
                     ADDIVINGRFKKQLEYLNKHSDVSLVGGQAVVIDENDNVVRDYFNMNPVDFSWGNEII
                     HPTWLLRSELYYKLGGYRRLDAAQDYDFLCRAVLSGCIVRNIDDVVLFYRIRHGSIGS
                     CKKFIQIKNKTILSKFFRKNEVAPIHLFNATNFSVEFFLFSVIESIKIKHNIVGKCIG
                     WLSPLHAKNYYLNLRKRMGKK"
     gene            complement(6061..7266)
                     /gene="wzx"
                     /locus_tag="JN125_000006"
     CDS             complement(6061..7266)
                     /gene="wzx"
                     /locus_tag="JN125_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_158227888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O143 family O-antigen flippase"
                     /protein_id="HAY8869916.1"
                     /translation="MSSFLRSIISVSALKLVDYIVPIIIMPLVLTRFNLEGYGVYSYV
                     LTISTFISFIYDACLNTVGVQQLNKLKGNEIAQQSFVISAIFFKLVFFFVCAIVFIII
                     SETAGKSDYFCVVIFSFGFGMLNSWYYIAKDNFRFIIIVSLVVKILAVLFVLYYAFEL
                     HMFIFIQAIASALVGLISLIKIKNDNRLGKISFRHIKNYLKNIKHMYIYSGVNALIQP
                     IINSAILASGNASLLGIYNVVMRFVTVSVTFSNSIITVLNKCNSEVFYSVGHKTNYVE
                     VKYRSQLLKLLFYSIVVFICVAAISYVSIYMTKGEISRFFIFLIFSFSLAVIPSILNQ
                     YLTQLIHMIHSSKNIVKYVICSNVLSLISIFLFSSLFPYYYIVYAVVLSPIIITICCL
                     WDLKCKNLL"
     gene            complement(7259..7705)
                     /locus_tag="JN125_000007"
     CDS             complement(7259..7705)
                     /locus_tag="JN125_000007"
                     /inference="COORDINATES: protein motif:HMM:NF012360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HAY8869917.1"
                     /translation="MSIFSRIQLIWYKLCFICEFGVKRYKQSHIYGPYKIVEPSNLKF
                     GNSFSINDFVYINASGGVILGHNVVLSAGSKILSTGLVFEKKIFKYKKDKVVIKDNVQ
                     LGAGAIVLPGVEICSNIIVGAGAIVTKNLEEPGVYVGQPARKIKDV"
     gene            complement(7702..8619)
                     /locus_tag="JN125_000008"
     CDS             complement(7702..8619)
                     /locus_tag="JN125_000008"
                     /inference="COORDINATES: protein motif:HMM:NF025663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HAY8869918.1"
                     /translation="MNRKNLSMKLMYILYNIKYLLKCFVVLITPDSLIIKKQFLEYQG
                     YPLGLNNPKTLNQKLQWLKLNDRTPLHTICADKIRVREYVENRLGTRDNIIDLLKVYD
                     TPFDITFESLPQGKFVIKSNHYCGDYFIVRDKNLLNIDEVKWKFIRTLNCNIYHHGRE
                     WQYKNIDRRIIVERLLEDEAGKVPNDIKIHCFNGEPKFIYVSLDREGGNYRSIYDTSW
                     NMLDFCWARRGKDLSKFNVKNISKPSQLENALNISKKLSQGFKYLRVDLYLVQEKIYV
                     GELTFHQGSGYDKITPFEWDERLGKELKL"
     gene            complement(8616..9299)
                     /locus_tag="JN125_000009"
     CDS             complement(8616..9299)
                     /locus_tag="JN125_000009"
                     /inference="COORDINATES: protein motif:HMM:TIGR01488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IB family phosphatase"
                     /protein_id="HAY8869919.1"
                     /translation="MKLKKIALFDLCETLVDFQTGDGFIYYVIDRLGICNNIKIQTLN
                     RVASSLSIFKIEQIINKIRLGESLRKRILLYMLKNIERDILNVMARDYVNEIILRRVN
                     PAIIKILNKHLKDGDEVIIISGGYDIYIQYLVKALEINSFVCTKIKFDNRGRCLGRIS
                     GKNCMGYNKVLMLKGVLSLDVSEYHITTYSDSISDLPILKMSNVGVVVSKGQAREWVR
                     QHKLFEILI"
     gene            complement(9271..10377)
                     /locus_tag="JN125_000010"
     CDS             complement(9271..10377)
                     /locus_tag="JN125_000010"
                     /inference="COORDINATES: protein motif:HMM:NF012382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate aminotransferase family
                     protein"
                     /protein_id="HAY8869920.1"
                     /translation="MNKFVKKMKPYKLASHAIWESENKETILKLDWNESTIEPPERVK
                     NALMNSLVNNLIRYYPDVSNKDLIIKISNYVGVPKEYIQYFCSSDSAHESIIRTLINE
                     NDKILMLAPTYDNFRTTGEAQGATICYSIFEDNYYWSLKKFESDLNKFQPQMAYLCNP
                     NNPTGTLIPKGDIHYLVEKYKGIYFIIDEAYYEFAKLTCADFVNSFNNIIITRTFSKA
                     FSLAGMRMGYIIASQDLLGAINKVRNAKNIPQLSQIAALNALDEVEYMNNYVKEVNQA
                     KRFFYDKLKNINIGQKNIVYGEGNFLVIEFKSMNDKKAFIERLKSNLIFVRDLSHMKE
                     VELCVRITIGTKKQMLYVIRILEQMYEVKKDSII"
     gene            complement(11166..12059)
                     /gene="galF"
                     /locus_tag="JN125_000011"
     CDS             complement(11166..12059)
                     /gene="galF"
                     /locus_tag="JN125_000011"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalF"
                     /protein_id="HAY8869921.1"
                     /translation="MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEI
                     VAAGIKEILLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNV
                     RQGEPLGLGHSILCARPAIGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRS
                     QVLAKRMPGDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDIMAVGRYVLS
                     ADIWPELERTQPGAWGRIQLTDAIAELAKKQAVDAMLMTGDSYDCGKKMGYMQAFVKY
                     GLRNLKEGAKFRKGIEKLLSE"
     gene            complement(12234..13628)
                     /gene="wcaM"
                     /locus_tag="JN125_000012"
     CDS             complement(12234..13628)
                     /gene="wcaM"
                     /locus_tag="JN125_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis protein WcaM"
                     /protein_id="HAY8869922.1"
                     /translation="MPFKKLSRRTFLTASSALAFLHTPFARALPARQIVNINDYNPHD
                     WIASFKQAFSEGQTVVVPAGLVCDNINTGIFIPAGKTLHILGSLRGNGKGRFVLQDGS
                     QVTGEEGGSMHNITLDVRGSDCTIKGLTMSGFGPVTQIYIGGKNKRVMRNLTIDNLTV
                     SHANYAILRQGFHNQIIGANITNCKFSDLQGDAIEWNVAINDRDILISDHVIERINCT
                     NGKINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCRQLIHVENGKHFVIRNIK
                     ARNITPDFSKKAGIDNATVAIYGCDNFVIDNIEMINSAGMLIGYGVIKGKYLSIPQNF
                     RVNNIQLDNTHLAYKLRGIQISAGNAVSFVALTNIEMKRASLELHNKPQHLFMRNIKV
                     MQESSVGPALSMNFDMRKDVRGVFMAKKETLLSLANVHAVNERGQSSVDIDRINHHIV
                     NVEKINFRLPERRE"
     gene            complement(13639..14859)
                     /gene="wcaL"
                     /locus_tag="JN125_000013"
     CDS             complement(13639..14859)
                     /gene="wcaL"
                     /locus_tag="JN125_000013"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaL"
                     /protein_id="HAY8869923.1"
                     /translation="MKVGFFLLKFPLSSETFVLNQITAFIDMGFEVEIVALQKGDTQN
                     THAAWTKYNLAARTRWLQDEPTGKVAKLRHRASQTLRGIHRKNTWQALNLKRYGAESR
                     NLILSAICGQVSTPFYADVFIAHFGPAGVTAAKLRELGVIRGKIATIFHGIDISSRDV
                     LNHYTPEYQQLFRRGDLMLPISDLWAGRLQKMGCPREKIAVSRMGVDMTRFSPRPVKA
                     PATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGPWERRLRTLIEQYQ
                     LEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVST
                     LHSGIPELVEADKSGWLVPENDARALAQRLAAFSQLDTDELAPVVKRAREKVEHDFNQ
                     QVINRELASLLQAL"
     gene            complement(14856..16136)
                     /gene="wcaK"
                     /locus_tag="JN125_000014"
     CDS             complement(14856..16136)
                     /gene="wcaK"
                     /locus_tag="JN125_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis pyruvyl transferase
                     WcaK"
                     /protein_id="HAY8869924.1"
                     /translation="MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRYPV
                     SSSWLLNRPVMGDPLFLQMKQHNSAAGVVGRVKKVLRRRYQHQVLLSRVTDTGKLRNI
                     AIAQGFTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCTFMAKKPLFMIGHSVGP
                     FQDEQFNQLANYVFGHCDALILRESVSLDLMKRSNITTAKVEHGVDTAWLVDHHTEDF
                     TASYAVQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRILDEGYQV
                     IALSTCTGIDSYNKDDRMVALNLRQHISDPARYHVVMDELNDLEMGKILGACQLTVGT
                     RLHSAIISMNFSTPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGH
                     LPALNARLSEAVSRERQMGMRMVQSVLERIGEAK"
     gene            complement(16208..17686)
                     /gene="wzxC"
                     /locus_tag="JN125_000015"
     CDS             complement(16208..17686)
                     /gene="wzxC"
                     /locus_tag="JN125_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M-antigen undecaprenyl disphosphate flippase"
                     /protein_id="HAY8869925.1"
                     /translation="MSLREKTISGAKWSAIATVIIIGLGLVQMTVLARIIDNHQFGLL
                     TVSLVIIALADTLSDFGIANSIIQRKEISHLELTTLYWLNVGLGIVVCVAVFLLSDLI
                     GDVLNNPDLAPLIKTLSLAFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTFTV
                     VSAHFWLLAMTAILGYLVNSAVRTLLFGYFGRKIYRPGLHFSLASVAPNLRFGAWLTA
                     DSIINYLNTNLSTLVLARILGAGVAGGYNLAYNVAVVPPMKLNPIITRVLFPAFAKIQ
                     DDTEKLRVNFYKLLSVVGIINFPALLGLMVVSNNFVPLVFGEKWSSIIPVLQLLCIVG
                     LLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAIVIGGQMAGAIGVTLGFLLVQI
                     INTILSYFVMIKPVLGSSYRQYILSLWLPFYLSLPTLVVSYALGIVLKGQLALGMLLA
                     VQIAAGVLAFVVMIVLSRHPLVVEVKRQFCRSEKMKMLLRAG"
     gene            complement(17688..19082)
                     /gene="wcaJ"
                     /locus_tag="JN125_000016"
     CDS             complement(17688..19082)
                     /gene="wcaJ"
                     /locus_tag="JN125_000016"
                     /EC_number="2.7.8.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-phosphate glucose
                     phosphotransferase"
                     /protein_id="HAY8869926.1"
                     /translation="MTNLKKRERAKTNASLISMVQRFSDITIMFAGLWLVCEVSGLSF
                     LYMHLLVALITLVVFQMLGGITDFYRSWRGVRAATEFALLLQNWTLSVIFSAGLVAFN
                     NDFDTQLKIWLAWYGLTSIGLVVCRSCIRIGAGWLRNHGYNKRMVAVAGDLAAGQMLM
                     ESFRNQPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMQMCDGA
                     RVKKLVHQLADTTCSVLLIPDVFTFNILHSRIEEMNGVPVVPLYDTPLSGVNRLLKRA
                     EDIVLATLILLLISPVLCCIALAVKLSSPGPVIFRQTRYGMDGKPIKVWKFRSMKVME
                     NDKVVTQATQNDPRVTKVGNFLRRTSLDELPQFINVLTGGMSIVGPRPHAVAHNEQYR
                     QLIEGYMLRHKVKPGITGWAQINGWRGETDTLEKMEKRVEFDLEYIREWSVWFDIKIV
                     FLTVFKGFVNKAAY"
     gene            complement(19136..20506)
                     /gene="cpsG"
                     /locus_tag="JN125_000017"
     CDS             complement(19136..20506)
                     /gene="cpsG"
                     /locus_tag="JN125_000017"
                     /EC_number="5.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase CpsG"
                     /protein_id="HAY8869927.1"
                     /translation="MKKLTCFKAYDIRGKLGEELNEDIAWRIGRAYGEFLKPKTIVLG
                     GDVRLTSEILKLALAKGLQDAGVDVLDIGMSGTEEIYFATFHLGVDGGIEVTASHNPM
                     DYNGMKLVREGARPISGDTGLRDVQRLAEANDFPPVDETKRGRYQQINLRDAYVDHLF
                     GYINVKNLTPLKLVINSGNGAAGPVVDAIEARFKALGAPVELIKVHNTPDGNFPNGIP
                     NPLLPECRDDTRNAVIKHGADMGIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLE
                     KNPGAKIIHDPRLSWNTVDVVTAAGGTPVMSKTGHAFIKERMRKEDAIYGGEMSAHHY
                     FRDFAYCDSGMIPWLLVAELVCLKEKTLGELVRDRMAAFPASGEINSKLAQPVEAINR
                     VEQHFSREALAVDRTDGISMTFADWRFNLRSSNTEPVVRLNVESRGDVPLMEARTRTL
                     LTLLNE"
     gene            complement(20608..22044)
                     /gene="cpsB"
                     /locus_tag="JN125_000018"
     CDS             complement(20608..22044)
                     /gene="cpsB"
                     /locus_tag="JN125_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-1-phosphate guanyltransferase"
                     /protein_id="HAY8869928.1"
                     /translation="MAQSKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTT
                     ICRLKGVECESPVVICNEQHRFIVAEQLRQLNKLTENIILEPAGRNTAPAIALAALAA
                     KRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPEIGYGY
                     IRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELK
                     KYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAG
                     WSDVGSWSSLWEISAHTAEGNVCHGDVINHKTENSYVYAESGLVTTVGVKDLVVVQTK
                     DAVLIADRNAVQDVKKVVEQIKADGRHEHRVHREVYRPWGKYDSIDAGDRYQVKRITV
                     KPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGDIKLLGENESIYIPLGATHCLENAGKI
                     PLDLIEVRSGSYLEEDDVVRFADRYGRV"
     gene            complement(22047..23270)
                     /gene="wcaI"
                     /locus_tag="JN125_000019"
     CDS             complement(22047..23270)
                     /gene="wcaI"
                     /locus_tag="JN125_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis fucosyltransferase
                     WcaI"
                     /protein_id="HAY8869929.1"
                     /translation="MKILVYGINYSPELTGIGKYTGEMVEWLVAQGHEVRVITAPPYY
                     PQWQVGENYSTWRYKREEGAATVWRCPLYVPKQPSTLKRLLHLGSFAVSSFFPLMAQR
                     RWKPDRIIGVVPTLFCTPGMRLLAKLSGARTVLHIQDYEVDAMLGLGLAGKGKGGKVA
                     QLATAFERSGLHNVDNVSTISRSMMNKAIEKGVAAENVIYFPNWSEIARFQHIADADV
                     DALRNQLGLPDNKKIILYSGNIGEKQGLENVIEAADLLRDEPLIFAIVGQGGGKARLE
                     KMAQQRGLRNMQFFPLQSYDALPALLKMGDCHLVVQKRGAADAVLPSKLTNILAVGGN
                     AVITAEAHTELGQLCETFPGIAVCVEPESVEALVAGIRQALLLPKHNTVAREYAERTL
                     DKENVLRQFINDIRG"
     gene            complement(23267..23746)
                     /locus_tag="JN125_000020"
     CDS             complement(23267..23746)
                     /locus_tag="JN125_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416555.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose mannosyl hydrolase"
                     /protein_id="HAY8869930.1"
                     /translation="MFLRQEDFATVVRSTPLVSLDFVVENSRGEFLLGKRTNRPAQGY
                     WFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHY
                     VVLGFRFRVSEEELLLPDEQHDDYRWLTPDALLASDNVHANSRAYFLAEKRAGVPGL"
     gene            complement(23749..24714)
                     /gene="fcl"
                     /locus_tag="JN125_000021"
                     /gene_synonym="wcaG"
                     /gene_synonym="yefB"
     CDS             complement(23749..24714)
                     /gene="fcl"
                     /locus_tag="JN125_000021"
                     /gene_synonym="wcaG"
                     /gene_synonym="yefB"
                     /EC_number="1.1.1.271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HAY8869931.1"
                     /translation="MSKQRIFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDS
                     RAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKL
                     LFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRS
                     VMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMA
                     AASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASK
                     PDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLENQDRFRG"
     gene            complement(24717..25838)
                     /gene="gmd"
                     /locus_tag="JN125_000022"
     CDS             complement(24717..25838)
                     /gene="gmd"
                     /locus_tag="JN125_000022"
                     /EC_number="4.2.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HAY8869932.1"
                     /translation="MSKVALITGVTGQDGSYLAEFLLKKGYEVHGIKRRASSFNTERV
                     DHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYT
                     ADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVA
                     KLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYL
                     GNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRF
                     EGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWK
                     PEITLREMVSEMVANDLEAAKKHSLLKSHGYDVAIALES"
     gene            complement(25864..26412)
                     /gene="wcaF"
                     /locus_tag="JN125_000023"
     CDS             complement(25864..26412)
                     /gene="wcaF"
                     /locus_tag="JN125_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis acetyltransferase
                     WcaF"
                     /protein_id="HAY8869933.1"
                     /translation="MQDLSGFSVPKGFRGGNAIKVQLWWAVQATIFAWSPQVLYRWRA
                     FLLRLFGAKIGKNVVIRPSVKITYPWKLTLGDYAWVGDDVNLYTLGEITIGAHSVISQ
                     KSYLCTGSHDHASQHFTINATPIVIGEKCWLATDVFVAPGVTIGDGTVVGARSSVFKS
                     LPANVVCRGNPAVVIRERVETE"
     gene            complement(26428..27174)
                     /gene="wcaE"
                     /locus_tag="JN125_000024"
     CDS             complement(26428..27174)
                     /gene="wcaE"
                     /locus_tag="JN125_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaE"
                     /protein_id="HAY8869934.1"
                     /translation="MLLSIITVAFRNLEGIVKTHASLAHLAQADDISFEWIVVDGGSN
                     DGTREYLENLNGIFNLRFVSEPDNGIYDAMNKGIAMAQGKFALFLNSGDIFHQDAANF
                     VRKLKMQKDNVMITGDALLDFGDGHKIKRSAKPGWYIYHSLPASHQAIFFPVSGLKKW
                     RYDLEYKVSSDYALAAKMYKAGYAFKKLNGLVSEFSMGGVSTTNNMELCADAKKVQRQ
                     ILHVPGFWAELSWHLRQRTTSKTKALYNKS"
     gene            complement(27185..28402)
                     /gene="wcaD"
                     /locus_tag="JN125_000025"
     CDS             complement(27185..28402)
                     /gene="wcaD"
                     /locus_tag="JN125_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative colanic acid polymerase WcaD"
                     /protein_id="HAY8869935.1"
                     /translation="MSTSIRICSYLLLPLIYLLVNVKIAQLGESFPITIVTFLPVLLL
                     LFLERISVKKLMIALGIGAGLTAFNYLFGQSLDASKYVTSTMLFVYIVIIIGMVWSIR
                     FKTISPHNHRKILHFFYLVVGLVVALAAVEMAQIILTGGSSIMESISKYLIYSNSYVL
                     NFIKFGGKRTTALYFEPAFFALALISIWLSIKQFGIKTPKTDAMILAGIILSGSFSGV
                     MTFILFYLLEWAFQYLNKEAIKKKLPLALISLAVFLVGVVIAFPYISTRLGDLGTEGS
                     SSYYRIVGPLVMVGYSLTHIDGVVRFGSLYEYVASFGIFNGADVGKTIDNGLYLLIIY
                     FSWFAVFLSLWYMGKVIKMMINAFGDNRNFRVQLYLFTPVSLFFTGSIFSPEYAFLIV
                     CPFILRKALNITR"
     gene            complement(28377..29594)
                     /gene="wcaC"
                     /locus_tag="JN125_000026"
     CDS             complement(28377..29594)
                     /gene="wcaC"
                     /locus_tag="JN125_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaC"
                     /protein_id="HAY8869936.1"
                     /translation="MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGK
                     ESVSHQNYPQVIKHTPRMTAMANIVLFRLFNRDLFGNFNELYRTITRTPGPVVLHFHV
                     LHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCP
                     TLNNYPPVKIDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIIN
                     NGIDMATEAILADLPPVRETQGKPKIAVVAHDLRYDGKTNQQLVREMMALGDKIELHT
                     FGKFSPFTAGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVI
                     ATHSDAAREVLQKSGGKTVSEEEVLQLVQLSKPEIAQAIFGTTLAEFSQRSRAAYSGQ
                     QMLEEYVNFYQNL"
     gene            complement(29591..30079)
                     /gene="wcaB"
                     /locus_tag="JN125_000027"
     CDS             complement(29591..30079)
                     /gene="wcaB"
                     /locus_tag="JN125_000027"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis acetyltransferase
                     WcaB"
                     /protein_id="HAY8869937.1"
                     /translation="MLEDLRANSWSLRPCCMVLAYRVAHFCSVWRKKNVLNNIWAAPL
                     LVLYRIITECFFGYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRG
                     ADNMACPHIGNGVELGANVIILGDITLGNNVTVGAGSVVLDSVPDNALVVGEKARVKV
                     IK"
     gene            complement(30082..30921)
                     /gene="wcaA"
                     /locus_tag="JN125_000028"
     CDS             complement(30082..30921)
                     /gene="wcaA"
                     /locus_tag="JN125_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis glycosyltransferase
                     WcaA"
                     /protein_id="HAY8869938.1"
                     /translation="MKDNPLISIYMPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCS
                     NSWEQLQQYVTALNDPRITYIHNDINSGACAVRNQAIMLAQGEYITGIDDDDEWTPNR
                     LSVFLAHKQQLVTHAFLYANDYVCQGEVYSQPASLPLYPKSPYSRRLFYKRNIIGNQV
                     FTWAWRFKECLFDTELKAAQDYDIFLRMVVEYGEPWKVEEATQILHINHGEMQITSSP
                     KKFSGYFHFYRKHKDKFDRASKKYQLFTLYQIRNKRMTWRTLLTLLSVRNGKRLADGI
                     RGR"
     gene            complement(31014..33176)
                     /gene="wzc"
                     /locus_tag="JN125_000029"
     CDS             complement(31014..33176)
                     /gene="wzc"
                     /locus_tag="JN125_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein kinase Wzc"
                     /protein_id="HAY8869939.1"
                     /translation="MTEKVKQHAAPVTGSDEIDIGRLVGTVIEARWWVIGITTVFALC
                     AVVYTFFATPIYSADALVQIEQNSGNSLVQDIGSALANKPPASDAEIQLIRSRLVLGK
                     TVDDLDLDIAVSKNTFPIFGAGWDRLMGRQNETVKVTTFNRPKEMADQVFTLNVLDNK
                     NYTLSSDGGFSARGQAGQMLKKEGVTLMVEAIHASPGSEFTVTKYSTLGMINQLQNSL
                     TVTENGKDAGVLSLTYTGEDREQIRDILNSIARNYQEQNIERKSAEASKSLAFLAQQL
                     PEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLY
                     TKVHPAYRTLLEKRQALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNK
                     EQELKITEASTVGDVRIVDPAITQPGVLKPKKGLIILGAIILGLMLSIVGVLLRSLFN
                     RGIESPQVLEEHGISVYASIPLSEWQKARDSVKTIKGIKRYKQSQLLAVGNPTDLAIE
                     AIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDMR
                     KGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKFDLIPRGQVPPNPSELLMSER
                     FAELVNWASKNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSR
                     FEQNGIPVKGVILNSIFRRASAYQDYGYYEYEYKSDAK"
     gene            complement(33179..33622)
                     /gene="wzb"
                     /locus_tag="JN125_000030"
     CDS             complement(33179..33622)
                     /gene="wzb"
                     /locus_tag="JN125_000030"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight
                     protein-tyrosine-phosphatase Wzb"
                     /protein_id="HAY8869940.1"
                     /translation="MFNNILVVCVGNICRSPTAERLLQRYHPELKVESAGLGALVGKG
                     ADPTAISVAAEHQLSLEGHCARQISRRLCRNYDLILTMEKRHIERLCEMAPEMRGKVM
                     LFGHWDNECEIPDPYRKSRETFAAVYTLLERSARQWAQALNAEQV"
     gene            complement(33628..34767)
                     /locus_tag="JN125_000031"
     CDS             complement(33628..34767)
                     /locus_tag="JN125_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide export protein"
                     /protein_id="HAY8869941.1"
                     /translation="MMKSKMKLMPLLVSVTLISGCTVLPGSNMSTMGKDVIKQQDADF
                     DLDKMVNVYPLTPRLIDQLRPRPNVARPNMTLESEIANYQYRVGPGDVLNVTVWDHPE
                     LTTPAGQYRSSSDTGNWVQPDGTMFYPYIGKVHVVGKTLAEIRSDITGRLATYIADPQ
                     VDVNIAAFRSQKAYISGQVNKSGQQAITNVPLTILDAINAAGGLTDTADWRNVVLTHN
                     GREERISLQALMQNGDLNQNRLLYPGDILYVPRNDDLKVFVMGEVKKQSTLKMDFSGM
                     TLTEALGNAEGIDMTTSNASGIFVIRPLKGEGGRNGKIASIYQLDMSDATSLVMATEF
                     RLQPYDVVYVTTAPVSRWNRLINQLLPTISGVRYMTDTASDIHNW"
     gene            35426..37009
                     /locus_tag="JN125_000032"
     CDS             35426..37009
                     /locus_tag="JN125_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HAY8869942.1"
                     /translation="MEWIADPSIWAGLITLIVIELVLGIDNLVFIAILAEKLPPKQRD
                     RARVTGLLLAMLMRLLLLASISWLVTLTQPLFSFRSFTFSARDLIMLFGGFFLLFKAT
                     MELNERLEGKDSNNPTQRKGAKFWGVVTQIVVLDAIFSLDSVITAVGMVDHLLVMMAA
                     VVIAISLMLMASKPLTQFVNSHPTIVILCLSFLLMIGFSLVAEGFGFVIPKGYLYAAI
                     GFSVMIEALNQLAIFNRRRFLSANQTLRQRTTEAVMRLLSGQKEDAELDAETASMLVD
                     HGNQQIFNPQERRMIERVLNLNQRTVSSIMTSRHDIEHIDLNAPEEEILQLLERNQHT
                     RLVVTDGDDAEDLLGVIHVIDLLQQSLRGEPLNLRVLIRQPLVFPETLPLLPALEQFR
                     NARTHFAFVVDEFGSVEGIVTLSDVTETIAGNLPNEVEEIDARHDIQKNADGSWTANG
                     HMPLEDLVQYVPLPLDEKREYHTIAGLLMEYLQRIPKPGEEVQVGDYLLKTLQVESHR
                     VQKVQIIPLRKDGEMEYEV"
     gene            complement(37283..39136)
                     /gene="asmA"
                     /locus_tag="JN125_000033"
     CDS             complement(37283..39136)
                     /gene="asmA"
                     /locus_tag="JN125_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane assembly protein AsmA"
                     /protein_id="HAY8869943.1"
                     /translation="MRRFLTTLMILLVVLVAGLSALVLLVNPNDFRDYMVKQVAARSG
                     YQLQLDGPLRWHVWPQLSILSGRMSLTAQGASQPLVRADNMRLDVALLPLLSHQLSVK
                     QVMLKGAVIQLTPQTEAVRSEDAPVAPRDNTLPDLSDDRGWSFDISSLKVADSVLVFQ
                     HEDDEQVTIRNIRLQMEQDPQHRGSFEFSGRVNRDQRDLTISLNGTVDASDYPHDLTA
                     AIEQINWQLQGADLPKQGIQGQGSFQAQWQESHKRLSFNQISLTANDSTLSGQAQVTL
                     TEKPEWQLRLQFPQLNLDNLIPLNETANGENGAAQQGQSQSTLPRPVISSRIDEPAYQ
                     GLQGFTADILLQASNVRWRGMNFTDVATQMTNKSGLLEITQLQGKLNGGQVSLPGTLD
                     ATSINPRINFQPRLENVEIGTILKAFNYPISLTGKMSLAGDFSGADIDADAFRHNWQG
                     QAHVEMTDTRMEGMNFQQMIQQAVERNGGDVKAAENFDNVTRLDRFTTDLTLKDGVVT
                     LNDMQGQSPVLALTGEGMLNLADQTCDTQFDIRVVGGWNGESKLIDFLKETPVPLRVY
                     GNWQQLNYSLQVDQLLRKHLQDEAKRRLNDWAERNKDSRNGKDVKKLLEKM"
     gene            complement(39158..39739)
                     /gene="dcd"
                     /locus_tag="JN125_000034"
     CDS             complement(39158..39739)
                     /gene="dcd"
                     /locus_tag="JN125_000034"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HAY8869944.1"
                     /translation="MRLCDRDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTF
                     RGHTAAFIDLSGPKDEVSAALDRVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPAD
                     LVGWLDGRSSLARLGLMVHVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMLIGALSF
                     EPLSGPAARPYNRREDAKYRNQQGAVASRIDKD"
     gene            complement(39831..40472)
                     /gene="udk"
                     /locus_tag="JN125_000035"
     CDS             complement(39831..40472)
                     /gene="udk"
                     /locus_tag="JN125_000035"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HAY8869945.1"
                     /translation="MTDQSHQCVIIGIAGASASGKSLIASTLYRELREQVGDEHIGVI
                     PEDCYYKDQSHLSMEERVKTNYDHPSAMDHSLLLEHLQALKRGSAIDLPVYSYVEHTR
                     MKETVTVEPKKVIILEGILLLTDARLRDELNFSIFVDTPLDICLMRRIKRDVNERGRS
                     MDSVMAQYQKTVRPMFLQFIEPSKQYADIIVPRGGKNRIAIDILKAKISQFFE"
     gene            40790..44107
                     /locus_tag="JN125_000036"
     CDS             40790..44107
                     /locus_tag="JN125_000036"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HAY8869946.1"
                     /translation="MSKQSQHVLIALPHPLLHLVSLGLVSFIFTLFSLELSQFGTQLA
                     PLWFPTSIMMVAFYRHAGRMWPGIALSCSLGNIAASILLFSTSSLNMTWTTINIVEAV
                     VGAVLLRKLLPWYNPLQNLADWLRLALGSAIVPPLLGGVLVVLLTPGDDPLRAFLIWV
                     LSESIGALALVPLGLLFKPHYLLRHRNPRLLFESLLTLAITLTLSWLSMLYLPWPFTF
                     IIVLLMWSAVRLPRMEAFLIFLTTVMMVSLMMAADPSLLATPRTYLMSHMPWLPFLLI
                     LLPANIMTMVMYAFRAERKHISESETHFRNAMEYSAIGMALVGTEGQWLQTNKALCQF
                     LGYSQEELRGLTFQQLTWPEDLNKDLQQVEKLISGEINTYSMEKRYYNRNGDVVWALL
                     AVSLVRHTDGTPLYFIAQIEDINELKRTEQVNQQLMERITLANEAGGIGTWEWELKPN
                     IFSWDKRMFELYEIPPHIKPNWQVWYECVLPEDRQHAEKVIRDSLQSRSPFKLEFRIT
                     VKDGIRHIRALANRVLNKEGEVERLLGINMDMTEVKQLNEALFQEKERLHITLDSIGE
                     AVVCIDMAMKITFMNPVAEKMSGWTQEEALGVPLLTVLHITFGDNGPLMENIYSADTS
                     RSAIEQDVVLHCRSGGSYDVHYSITPLSTLDGSNIGSVLVIQDVTESRKMLRQLSYSA
                     SHDALTHLANRASFEKQLRILLQTVNSTHQRHALVFIDLDRFKAVNDSAGHAAGDALL
                     RELASLMLSMLRSSDVLARLGGDEFGLLLPDCNVESARFIPTRIISAVNDYHFIWEGR
                     VHRVGASAGITLIDDNNHQAAEVMSQADIACYASKNGGRGRVTVYEPQQAAAHSERAA
                     MSLDEQWRMIKENQLMMLAHGVALPRIPEARNLWLISLKLWSCEGEIIDEQTFRRSFS
                     DPALSHALDRRVFHEFFQQAAKAVASKGISIALPLSVAGLSSATLVNDLLEQLENSPL
                     PPRLLHLIIPAEAILEHAESVQKLRLAGCRIVLNQVGRDLQIFNSLKANMADYLLLDG
                     ELCANVQGNLMDEMLITIIQGHAQRLGMKTIAGPVVLPLVMDTLSGIGVDLIYGDVIA
                     DAQPLDLLVNSSYFAIN"
     gene            complement(44216..45064)
                     /gene="alkA"
                     /locus_tag="JN125_000037"
     CDS             complement(44216..45064)
                     /gene="alkA"
                     /locus_tag="JN125_000037"
                     /EC_number="3.2.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase 2"
                     /protein_id="HAY8869947.1"
                     /translation="MYTLNWQPPYDWSWMLGFLAARAVSGVETVADDYYARSLAVGEY
                     RGVVTAIPDIARHTLHINLSAGLEPVAAECLAKMSRLLDLQCNPQIVNCALGKLGAAR
                     PGLRLPGSVDAFEQGVRAILGQLVSVAMAAKLTAKVVQLYGERLDDFPEYICFPTPQR
                     LAAADPQALKALGMPLKRAEALIHLANAALEGSLPMTIPGDVEQAMKTLQTFPDIGRW
                     TANYFALRGWQAKDVFLPDDYLIKQRFPGMTPAQIRRYAERWKPWRSYALLHIWYTEG
                     WQPDEA"
     gene            45198..46550
                     /gene="yegD"
                     /locus_tag="JN125_000038"
     CDS             45198..46550
                     /gene="yegD"
                     /locus_tag="JN125_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HAY8869948.1"
                     /translation="MFIGFDYGTANCSVAIMRDGKPHLLKMENDSTLLPSMLCAPTRE
                     AVSEWLYRHHDVPADDDETQALLRRAIRYNHEEDIDVTAKSVQFGLSSLAQYIDDPEE
                     VWFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIRQQAQAQLPETITQAVIGRPINF
                     QGLGGDEANTQAQGILERAAKRAGFRDVVFQYEPVAAGLDYEATLQEEKRVLVVDIGG
                     GTTDCSLLLMGPQWRSRLDREASLLGHSGYRIGGNDLDIALAFKNLMPLLGMGGETEK
                     GIALPILPWWNAVAINDVPAQSDFYSSANGRLLNDLVRDAREPEKVALLQKIWRQRLS
                     YRLVRSAEECKIALSSVAETRASLPFISDELATLISQQGLESALSQPLARILEQVQLA
                     LDNAQEKPDVIYLTGGSARSPLIKKALAEQLPGIPIAGGDDFGSVTAGLARWAEVVFR
                     "
     gene            complement(46563..48503)
                     /gene="yegI"
                     /locus_tag="JN125_000039"
     CDS             complement(46563..48503)
                     /gene="yegI"
                     /locus_tag="JN125_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310906.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase YegI"
                     /protein_id="HAY8869949.1"
                     /translation="MKPTLYTATGECVTPGRELGKGGEGAVYDINEFVDSVAKIYHTP
                     PPALKQDKLAFMAATADAQLLNYVAWPQATLHGGRGGKVIGFMMPKVSGKEPIHMIYS
                     PAHRRQSYPHCAWDFLLYVARNIASSFATVHEHGHVVGDVNQNSFMVGRDSKVVLIDS
                     DSFQINANGTLHLCEVGVSHFTPPELQTLPSFVGFERTANHDNFGLALLIFHVLFGGR
                     HPYSGVPLISDAGNALETDIAHFRYAYASDNQRRGLKPPPRSIPLSMLPGDVEAMFQQ
                     AFTESGVATGRPTAKAWVAALDSLRQQLKKCTVSAMHVYPAHLTDCPWCTLDNQGVIY
                     FIDLGEEVITTGGDFVLAKVWAMVMASVAPPALQLPLPDHFQPTGRPLPLGLLRREYI
                     ILIEIALSALSLLLCGLQAEPRYIILVPVLAAIWIIGSLTSKAYKAEVQQRREAFNRA
                     KMDYDHLVSQSQQLGGLEGFIAKRTMLEKMKDEILGLPEEEKRALAALHDTARERQKQ
                     KFLEGFFIDVASIPGVGPARKAALRSFGIETAADVTRRGVKQVKGFGDHLTQAVIDWK
                     ASCERRFVFRPNEAVTPAERQAVMAKMAAKRHRLELALTVGATELQRFRLHAPARTMP
                     LMEPLRQAAEKLAQAQADLSRC"
     gene            complement(48500..49261)
                     /locus_tag="JN125_000040"
     CDS             complement(48500..49261)
                     /locus_tag="JN125_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase 2C domain-containing
                     protein"
                     /protein_id="HAY8869950.1"
                     /translation="MSWRLVYASAVGTSHISADLPCQDACQMQVAWLNDQQPLLVMFL
                     ADGAGSVSQGGEGAKLAVNEAMAFMVQKVQDGELGLNDVLATNMVLTIRQRLFAEAEA
                     KALAVRDFACTFLGLISSANGTLIMQIGDGGVVVDFGRGLELPLTPMVGEYANMTHFI
                     SDEDAVSRLETFTSTERAHKVAAFTDGIQRLALNMLDNSPHVPFFTPFFNGLAAATQE
                     QLDLLPELLKQFLSSPAVNERTDDDKTLALALWLP"
     gene            complement(49258..49917)
                     /locus_tag="JN125_000041"
     CDS             complement(49258..49917)
                     /locus_tag="JN125_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HAY8869951.1"
                     /translation="MSEQITFATSDFASNPEPRCPCILLLDVSGSMNGRPINELNAGL
                     VTFRDELLADSLALKRVELGIVTFGPVHVEQPFTSAANFFPPILFAQGDTPMGAAITK
                     ALDMVEERKREYRANGISYYRPWIFLITDGAPTDEWQAAANKVFQGEEDKKFAFFSIG
                     VQGADMKTLAQISVRQPLPLQGLQFRELFSWLSSSLRSVSRSTPGTEVVLEAPKGWTS
                     V"
     gene            complement(50138..50197)
                     /gene="ibsA"
                     /locus_tag="JN125_000042"
     CDS             complement(50138..50197)
                     /gene="ibsA"
                     /locus_tag="JN125_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin IbsA"
                     /protein_id="HAY8869952.1"
                     /translation="MMKHVIILVILLVISFQAY"
     gene            complement(50470..50526)
                     /locus_tag="JN125_000043"
     CDS             complement(50470..50526)
                     /locus_tag="JN125_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HAY8869953.1"
                     /translation="MMRLLIIVVLLVISWPAY"
     gene            complement(50798..50854)
                     /locus_tag="JN125_000044"
     CDS             complement(50798..50854)
                     /locus_tag="JN125_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HAY8869954.1"
                     /translation="MMKILIIVVLLVISYPAY"
     gene            51133..52380
                     /gene="mdtA"
                     /locus_tag="JN125_000045"
     CDS             51133..52380
                     /gene="mdtA"
                     /locus_tag="JN125_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310909.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter subunit MdtA"
                     /protein_id="HAY8869955.1"
                     /translation="MKGSYKSRWVIVIVVVIAAIAAFWFWQGRNDSQSAAPGATKQAQ
                     QSPAGGRRGMRSGPLAPVQAATAVEQAVPRYLTGLGTITAANTVTVRSRVDGQLMALH
                     FQEGQQVKAGDLLAEIDPSQFKVALAQAQGQLAKDKATLTNARRDLARYQQLAKTNLV
                     SRQELDAQQALVSETEGTIKADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQIS
                     SGDTTGIVVITQTHPIDLLFTLPESDIATVVQAQKAGKPLVVEAWDRTNSKKLSEGTL
                     LSLDNQIDATTGTIKVKARFNNQDDALFPNQFVNARMLVDTEQNAVVIPTAALQMGNE
                     GHFVWVLNSENKVSKHLVTPGIQDSQKVVIRAGISAGDRVVTDGIDRLTEGAKVEVVE
                     AQSATTPEEKATSREYAKKGARS"
     gene            52380..55502
                     /gene="mdtB"
                     /locus_tag="JN125_000046"
     CDS             52380..55502
                     /gene="mdtB"
                     /locus_tag="JN125_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit MdtB"
                     /protein_id="HAY8869956.1"
                     /translation="MQVLPPSSTGGPSRLFIMRPVATTLLMVAILLAGIIGYRALPVS
                     ALPEVDYPTIQVVTLYPGASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITL
                     QFQLTLPLDVAEQEVQAAINAATNLLPSDLPNPPVYSKVNPADPPIMTLAVTSTAMPM
                     TQVEDMVETRVAQKISQISGVGLVTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT
                     GANVNSAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAE
                     NSWLGAWANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVEVTVLSDRTT
                     NIRASVDDTQCELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFS
                     INNLTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFS
                     LIAVLIPLLFMGDIVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQN
                     RFSRASEKMFDRIIAAYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQD
                     NGIIQGTLQAPQSSSFANMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQ
                     INLKPLDERDDRVQKVIARLQTAVDKVPGVDLFLQPTQDLTIDTQVSRTQYQFTLQAT
                     SLDALSTWVPQLMEKLQQLPQLSDVSSDWQDKGLVAYVNVDRDSASRLGISMADVDNA
                     LYNAFGQRLISTIYTQANQYRVVLEHNTENTPGLAALGTIRLTSSDGGVVPLSSIAKI
                     EQRFAPLSINHLDQFPVTTISFNVPDNYSLGDAVQAIMDTEKTLNLPVDITTQFQGCT
                     LAFQSALGSTVWLIVAAVVAMYIVLGILYESFIHPITILSTLPTAGVGALLALMIAGS
                     ELDVIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIYQACLLRFRPILMTT
                     LAALLGALPLMLSTGVGAELRRPLGIGMVGGLVVSQVLTLFTTPVIYLLFDRLALWTK
                     SRFACHEEEA"
     gene            55503..58580
                     /gene="mdtC"
                     /locus_tag="JN125_000047"
     CDS             55503..58580
                     /gene="mdtC"
                     /locus_tag="JN125_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit MdtC"
                     /protein_id="HAY8869957.1"
                     /translation="MKFFALFIYRPVATILLSVAITLCGILGFRMLPVAPLPQVDFPV
                     IMVSASLPGASPETMASSVATPLERSLGRIVGVSEMTSSSSLGSTRIILQFDFDRDIN
                     GAARDVQAAINAAQSLLPSGMPSRPTYRKANPSDAPIMILTLTSDTYSQGELYDFAST
                     QLAPTISQIDGVGDVDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQG
                     ALEDGTHRWQIQTNDELKTAAEYQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGMTN
                     AKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV
                     EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMAL
                     TIATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLL
                     LMGGLPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRML
                     VALQQGYGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQA
                     DQSISFQAMRGKLQDFMKIIRDDPAVDNVTGFTGGSRVNSGMMFITLKPRDERSETAQ
                     QIIDRLRAKLAKEPGANLFLMAVQDIRVGGRQSNASYQYTLLSDDLAALREWEPKIRK
                     KLATLPELADVNSDQQDNGAEMNLVYDRDTMARLGIDVQAANSLLNNAFGQRQISTIY
                     QPMNQYKVVMEVDPRYTQDISALEKMFVINNEGKAIPLSYFAKWQPANAPLSVNHQGL
                     SAASTISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILI
                     IAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLI
                     GIVKKNAIMMVDFALEAQRHGNLTPQEAIFQACLLRFRPIMMTTLAALFDALPLVLSG
                     GDGSELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSRKPKQTVTE"
     gene            58581..59996
                     /locus_tag="JN125_000048"
     CDS             58581..59996
                     /locus_tag="JN125_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8869958.1"
                     /translation="MTDLPDSTRWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESP
                     LHMHMVIVSYVLTVAVMLPASGWLADKVGVRNIFFTAIVLFTLGSLFCALSGTLNELL
                     LARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY
                     ASWHWIFLINIPVGIIGAIATLLLMPNYTMQTRRFDLSGFLLLAVGMAVLTLALDGSK
                     GTGLSPLTIAGLVAVGVVALVLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIG
                     SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATT
                     LGLSLVTLLFMTTALLGWYYVLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNS
                     LLSMIMQLSMSIGVTIAGLLLGLFGSQHVSVDSGTTQTVFMYTWLSMALIIALPAFIF
                     ARVPNDTHQNVAISRRKRSAQ"
     gene            59993..61396
                     /gene="baeS"
                     /locus_tag="JN125_000049"
     CDS             59993..61396
                     /gene="baeS"
                     /locus_tag="JN125_000049"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     BaeS"
                     /protein_id="HAY8869959.1"
                     /translation="MKFWRPGITGKLFLAIFATCIVLLISMHWAVRISFERGFIDYIK
                     HGNEQRLQLLSDALGEQYAQHGNWRFLRNNDRFVFQILRSFEHDNSEDKPGPGMPPHG
                     WRTQFWVVDQNNKVLVGPRAPIPPDGTRRPILVNGAEVGAVIASPVERLTRNTDINFD
                     KQQRQTSWLIVALATLLAALATFLLARGLLAPVKRLVDGTHKLAAGDFTTRVTPTSED
                     ELGKLAQDFNQLASTLEKNQQMRRDFMADISHELRTPLAVLRGELEAIQDGVRKFTPE
                     TVASLQAEVGTLTKLVDDLHQLSMSDEGALAYQKAPVDLIPLLEVAGGAFRERFASRG
                     LKLQFSLPDSITVFGDRDRLMQLFNNLLENSLRYTDSGGSLQISAGQRDKTVRLTFAD
                     SAPGVSDDQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGG
                     VSITVELPLERDLQREV"
     gene            61393..62115
                     /gene="baeR"
                     /locus_tag="JN125_000050"
     CDS             61393..62115
                     /gene="baeR"
                     /locus_tag="JN125_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator BaeR"
                     /protein_id="HAY8869960.1"
                     /translation="MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGD
                     QVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEI
                     GADDYICKPYSPREVVARVKTILRRCKPQRELQPQDAESPLIIDEGRFQASWRGKMLD
                     LTPAEFRLLKTLSHEPGKVFSREHLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAE
                     QSFIRAVYGVGYRWEADACRIV"
     gene            62306..62638
                     /locus_tag="JN125_000051"
     CDS             62306..62638
                     /locus_tag="JN125_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310915.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YegP family protein"
                     /protein_id="HAY8869961.1"
                     /translation="MAGWFELSKSSDNQFRFVLKAGNGETILTSELYTSKASAEKGIA
                     SVRSNSPQEERYEKKTASNGKFYFNLKAANHQIIGSSQMYATAQSRETGIASVKANGT
                     SQTVKDNT"
     gene            62847..63143
                     /locus_tag="JN125_000052"
     CDS             62847..63143
                     /locus_tag="JN125_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001307279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system ParD family
                     antitoxin"
                     /protein_id="HAY8869962.1"
                     /translation="MTYTDVRFLLTGGRKMARTMTVDLGDELREFIESLIESGDYRTQ
                     SEVIRESLRLLREKQAESRLQALRDMLAEGLSSGEAQPWEKDAFLRKVKAGIRK"
     gene            63145..63441
                     /locus_tag="JN125_000053"
     CDS             63145..63441
                     /locus_tag="JN125_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001220181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HAY8869963.1"
                     /translation="MRIIKLMPKANEDLEGIWYYSYHHFGEPQADRYVEHLSDVLQIL
                     SNNNIGTPRPELGEGIFVLPFERHVIYFLQSPGEIIVIRILNQNQDATRHLHWS"
     gene            63545..64906
                     /locus_tag="JN125_000054"
     CDS             63545..64906
                     /locus_tag="JN125_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-hydroxyuridine modification protein YegQ"
                     /protein_id="HAY8869964.1"
                     /translation="MFKPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFN
                     HENLQLGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLKPVVEMGPDALIMSDPGLIM
                     LVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELSLEEIEEIRNQVPDME
                     IEIFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNACRWEYNVQEGKEDDVGNIVHKY
                     EPIPVQNVEPTLGIGAPTDKVFMIEEAQRPGEYMTAFEDEHGTYIMNSKDLRAIAHVE
                     RLTKMGVHSLKIEGRTKSFYYCARTAQVYRKAIDDAAAGKPFDTSLLETLEGLAHRGY
                     TEGFLRRHTHDDYQNYEYGYSVSDRQQFVGEFTGERKGDLAAVAVKNKFSVGDSLELM
                     TPQGNINFTLEHMENAKGEAMPIAPGDGYTVWLPVPQDLELNYALLMRNFSGETTRNP
                     HGK"
     gene            complement(65180..65398)
                     /gene="ogrK"
                     /locus_tag="JN125_000055"
     CDS             complement(65180..65398)
                     /gene="ogrK"
                     /locus_tag="JN125_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000468310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prophage transcriptional regulator OgrK"
                     /protein_id="HAY8869965.1"
                     /translation="MFHCPLCQHAAHARTSRYITDTTKERYHQCQNVNCSATFITYES
                     VQRYIVKPGEVHAVRPHPLPSGQQIMWM"
     gene            complement(65479..66642)
                     /locus_tag="JN125_000056"
     CDS             complement(65479..66642)
                     /locus_tag="JN125_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016157990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage late control D family protein"
                     /protein_id="HAY8869966.1"
                     /translation="MLDALTFDAGSTLTPDYMLMLDSRDITGNISDRLMSMTLTDNRG
                     FEADQLDIELNDADGQVGLPVRGAVLTVYIGWKGFALVCKGKFTVDEVEHRGAPDVVT
                     IRARSADFRGTLNSRREGSWHDTTLGAIVEAIASRNRLEASVAPSLAGIKIPHIDQSQ
                     ESDAKFLTRLAERNGGEVSVKMGKLLFLKAGQGVTASGKKIPQVTITRSDGDRHHFAI
                     ADRGAYTGVTAKWLHTKDPKPQKQKVKLKRKKKEKHLRALEHPKAKPVTQKKTPKVPE
                     AREGEYMAGEADNVFALTTVYATKAQAMRAAQAKWDKLQRGVAEFSISLATGRADIYT
                     ETPVKVSGFKRVIDEQDWTITKVTHFLNNSGFTTSLELEVRLSDVEYETEDDE"
     gene            complement(66642..67121)
                     /locus_tag="JN125_000057"
     CDS             complement(66642..67121)
                     /locus_tag="JN125_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000978924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY8869967.1"
                     /translation="MMLALGMFVFMRQTLPHQTMQRESDYRWPSNPRIGKRDAFQFLG
                     VGEENMTLAGVLYPELTGGKLTMTTLRLMAEEGRAWPLLDGTGMIYGMYVISRVSETG
                     SIFFADGTPRKIDFTLSLTRVDESLAALYGDIGKQAESLIGKAGSMATKFTGMTGAG"
     gene            complement(67136..69583)
                     /locus_tag="JN125_000058"
     CDS             complement(67136..69583)
                     /locus_tag="JN125_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016236410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HAY8869968.1"
                     /translation="MSNNVKLQVLLRAVDQASRPFKSIRTASKSLSGDIRETQKSLRE
                     LNGQASRIEGFRKTSAQLAVTGHALEKARQEAEALATQFKNTERPTRAQAKVLESAKR
                     AAEDLQAKYNRLTDSVKRQQRELAAVGINTRNLAHDEQGLKNRISETTAQLNRQRDAL
                     ARVSAQQAKLNAVKQRYQAGKELAGNMASVGAAGVGIAAAGTMAGVKLLMPGYEFAQK
                     NSELQAVLGVVKDSAEMAALRKQARQLGDNTAASADDAAGAQIIIAKAGGDVDAIQAA
                     TPVTLNMALANRRTMEENAALLMGMKSAFQLSNDKVAHIGDVLSMTMNKTAADFDGMS
                     DALTYAAPVAKNAGVSIEETAAMVGALHDAKITGSMAGTGSRAVLSRLQAPTGKAWDA
                     LKELGVKTSDSKGNTRPVFTILKEMQASFEKNRLGTAQQAEYMKTIFGEEASSAAAVL
                     MTAASTGKLDKLTAAFKASDGKTAELVNIMQDNLGGDFKEFQSAYEAVGTDLFDQQEG
                     ALRKLTQTATKYVLKLDGWIQKNKSLASTIGIIVGGALAMIGVIGAIGLVAWPVITGI
                     NAIIAAAGAMGAIFTTVGSAVMTAIGAISWPVVAVVAAIVAGALLIRKYWEPVSAFFG
                     GVVEGLKAAFAPVGELFTPLKPVFDWLGEKLQAAWQWFKNLIAPVKATQDTLNRCRDT
                     GVMFGQALADALMLPLNAFNKLRSGIDWVLEKLGVINKESDTLDQTAARTNAATYGTG
                     GYIPATSSYAGYQAYQPVTAPAGRSYVDQSKNEYHISLTGGTAPGTQPDRQLQDALEK
                     YERDKRARARASMMHDG"
     gene            complement(69576..69695)
                     /locus_tag="JN125_000059"
     CDS             complement(69576..69695)
                     /locus_tag="JN125_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001496926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HAY8869969.1"
                     /translation="MADVAVIFHWPPSELYPMSLTELITWREKALRRSGNTNE"
     gene            complement(69728..70003)
                     /locus_tag="JN125_000060"
     CDS             complement(69728..70003)
                     /locus_tag="JN125_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001719230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HAY8869970.1"
                     /translation="MNKENVITLDNPVKRGEQVIEQVTLMKPSAGTLRGVSLAAVANS
                     EVDALIKVLPRMTAPMLTEQEVAALELPDLVALAGKVVGFLSPNSVQ"
     gene            complement(70061..70579)
                     /locus_tag="JN125_000061"
     CDS             complement(70061..70579)
                     /locus_tag="JN125_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001554312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HAY8869971.1"
                     /translation="MAMPRKLKLMNVFLNGYSYQGVAKSVTLPKLTRKLENYRGAGMN
                     GSAPVDLGLDDDALSMEWSLGGFPDSVIWELYAATGVDAVPIRFAGSYQRDDTGETVA
                     VEVVMRGRQKEIDTGEGKQGEDTESKISVVCTYFRLTMDGKELVEIDTINMIEKVNGV
                     DRLEQHRRNIGL"
     gene            complement(70592..71782)
                     /locus_tag="JN125_000062"
     CDS             complement(70592..71782)
                     /locus_tag="JN125_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001483446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath protein"
                     /protein_id="HAY8869972.1"
                     /translation="MSDYHHGVQVLEINDGTRVISTVSTAIVGMVCTASDADAETFPL
                     NKPVLITNVQSAIAKAGKKGTLAASLQAIADQSKPVTVVVRVEDGTGDDEETKLAQTV
                     SNIIGTTDENGQYTGLKALLAAESVTGVKPRILGVPGLDTKEVAVALASVCQKLRAFG
                     YISAWGCKTISEVKAYRQNFSQRELMVIWPDFLAWDTVTSTTATAYATARALGLRAKI
                     DQEQGWHKTLSNVGVNGVTGISASVFWDLQESGTDADLLNESGVTTLIRRDGFRFWGN
                     RTCSDDPLFLFENYTRTAQVLADTMAEAHMWAVDKPITATLIRDIVDGINAKFRELKT
                     NGYIVDATCWFSEESNDAETLKAGKLYIDYDYTPVPPLENLTLRQRITDKYLANLVTS
                     VNSN"
     gene            72119..72929
                     /locus_tag="JN125_000063"
                     /pseudo
     CDS             72119..72929
                     /locus_tag="JN125_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000161640.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin"
     gene            complement(73070..74347)
                     /locus_tag="JN125_000064"
     CDS             complement(73070..74347)
                     /locus_tag="JN125_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016239947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2254 domain-containing protein"
                     /protein_id="HAY8869973.1"
                     /translation="MISRWKWMLKQTFKKLWFRATLFAIVAIITALLSILFKSMIPES
                     VSVKVGAEAVDNILNILASSMLAVTTFSLSIMVTAYGSATTNVTPRATRLVVEDVTTQ
                     NVLATFIGSFLFSLVGIIALNMGAYGERGRVILFIVTLVVIALILITLLRWIQHLTSL
                     GRVGETTAKVEQAAIETFIARARNPCLGGYPWLENNEQPKGTVAVYPKKIGYVEYVDM
                     VKLSKLLTNDPRHVYLVAQPGSFIHPSTPVLYLSQGQESSISTDLLETIIVSDVRSFA
                     QDPRFCLSVMAEIACRALSPAVNDPGTAIDVIGRGVRILSAYAQNKSDEIEVKYPSVH
                     VAPLQNNDLLEDFFSPVARDGASMREIQIRVLKGLSMLSKGWPGIFAEAAQTLAFETL
                     EHATRADHIDSDRYLIKSIYYNLFSGEDSNKKP"
     gene            complement(74411..76408)
                     /locus_tag="JN125_000065"
     CDS             complement(74411..76408)
                     /locus_tag="JN125_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004119118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family transporter"
                     /protein_id="HAY8869974.1"
                     /translation="MSENDTTPKKSTSQVNKAVFFTSALLIFLLVAFAAVFPDVADKN
                     FKLLQQQIFTNASWFYILAVALILLSVTFLGLSRYGDIKLGPDHAQPDFSYHSWFAML
                     FSAGMGIGLMFFGVAEPVMHYLSPPVGTPETVAAAKEAMRLTFFHWGLHAWAIYAIVA
                     LILAFFSYRHGLPLTLRSALYPIIGDRIYGPIGHAVDIFAVIGTVFGVATSLGYGVLQ
                     VNAGLNHLFGVPINETVQVILIVVITGLATISVVSGLDKGIRILSELNLGLAVLLLAL
                     VLCLGPTVLLLKSFVENTGGYLSELVSKTFNLYAYEPKSSNWLGGWTLLYWGWWLSWS
                     PFVGMFIARVSRGRTIREFVTGVLFVPAGFTLMWMTVFGNSAIYLIMNQGATDLANTV
                     QQDVALALFNFLEHFPFSSVLSFIAMAMVIVFFVTSADSGAMVVDTLASGGVANTPVW
                     QRIFWALLMGVVAIALLIAGGLSALQTVTIASALPFSVILLISIYGLLKALRRDLTKR
                     ESLSMATIAPTAARNPIPWQRRLRNIAYLPKRSLVKRFMDDIIQPAMTLVQEELNKQG
                     TISHISDAAEDRIRLEVDLGNELNYIYEVRLRGYNSPTFALAALDNDEQQSEQHRYYR
                     AEVYLKEGGQNYDVMGWNQEQLINDILDQYEKHLHFLHLVR"
     gene            complement(76730..77257)
                     /locus_tag="JN125_000066"
     CDS             complement(76730..77257)
                     /locus_tag="JN125_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001762409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HAY8869975.1"
                     /translation="MQHLKNITAGNPKTVAQYQLTKNFDVIWLWSEDGKNWYEEVSNF
                     QEDTIKIVYDENNIIVGITRDASTLNPEGFSVVEVPDITANRRADDSGKWMFKDGAVI
                     KRIYTADEQQQLAESQKATLLSEAESVILPLERAVRLNMATDEERSRLEAWERYSVLV
                     SRVDPANPEWPEMPQ"
     gene            complement(77261..79351)
                     /locus_tag="JN125_000067"
     CDS             complement(77261..79351)
                     /locus_tag="JN125_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000104687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY8869976.1"
                     /translation="MSTKFKTVITTAGAAKLAAATAPGGRKVNITTMAVGDGGGKLPV
                     PDAGQTGLIHEVWRHALNKISQDKRNSNYIIAELVIPPEVGGFWMRELGLYDDAGTLI
                     AVANMAESYKPALAEGSGRSQTCRMVIIVSSVASVELTIDTTTVMATQDYVDDKIAEH
                     EQSRRHPDASLTAKGFTQLSSATNSTSETLAATPKAVKAAYDLANGKYTAQDATTARK
                     GLVQLSSATNSTSETLAATPKAVKAAYDLANGKYTAQDATTARKGLVQLSSATNSDSE
                     TLAATPKAVKTAYDLANGKYTAQDATTARKGLVQLSSATNSDSETQAATPKAVKSAYD
                     NAEKRLQKDQNGADIPGKDTFTKNIGACRAYSGALSTEAGNWTTAQFIEWLDSRGAFN
                     HPYWMCKGSWSYANNKIITDTGCGNIHLAGAVIEVMGIKSAMTIRITTPTTSSGGGAT
                     SAQFTYINHGDNYAPGWRRDWNRYGDSMSGTINQDSGSQNAYMSTALCSGTRGGKKYL
                     RKFRGGEGDTIWHETVQGGVIRWATGNTDAQEELSLSSAYGLRSRGEITSLSANGLRI
                     AYGNYGFFIRNDGGSTYLMLTASGDKFGTWNGLRPLTINNANGGVSMGHGLSVTGRVN
                     PSDYGNFDSRYVKDVRLGTRVVQTMQKGVMYEKSGHVITGLGIVGEVDGDDPAVFRPI
                     QKYINGTWYNVAQV"
     gene            complement(79362..79892)
                     /locus_tag="JN125_000068"
     CDS             complement(79362..79892)
                     /locus_tag="JN125_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019077161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein I"
                     /protein_id="HAY8869977.1"
                     /translation="MSDSRLLPTGSSPLEVAAAKACAEIEKTPVSIRDLWNPDTCPAN
                     LLPWLAWAFSVDRWDEKWPEATKRAVIRDAYFIHCHKGTIGAIRRVVEPLGYLINVTE
                     WWETSDPPGTFRLDIGVLESGITEAMYQEMERLIADAKPASRHLIGLNITRDIPGYLF
                     AGGVAYDGDVITVYPG"
     gene            complement(79885..80793)
                     /locus_tag="JN125_000069"
     CDS             complement(79885..80793)
                     /locus_tag="JN125_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000246670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate assembly protein"
                     /protein_id="HAY8869978.1"
                     /translation="MPIIDLNQLPAPDVVEELDFETILAERKATLISLYPEDQQEAVA
                     RTLTLESEPLVKLLEENAYRELIWRQRVNEAARAVMLACAAGNDLDVIGANYNTARLI
                     ITPADDSTLPPTPAEMESDTDYRLRIQQAFEGLSVAGSVGAYQYHGRSADGRVADISV
                     TSPSPACVTISVLSRENNGVASEDLLAVVRNALNGEDVRPVADRVTVQSAAIVEYQIN
                     ATLYLYPGPESEPIRAAAVKKLEAYITAQHRLGRDIRLSAIYAALHVEGVQRVELAAP
                     LADIVLNSTQASFCTEYRVVTGGSDE"
     gene            complement(80798..81145)
                     /locus_tag="JN125_000070"
     CDS             complement(80798..81145)
                     /locus_tag="JN125_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005228331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate assembly protein"
                     /protein_id="HAY8869979.1"
                     /translation="MTARYLGMNRSDGLTVTDLEHISQSIGDILRTPVGSRVMRRDYG
                     SLLASMIDQPQTPALELQIKVACYMAVLKWEPRVTLSSVTTARSFDGRMTVTLTGQHN
                     DTGQPLSLTIPVS"
     gene            complement(81142..81771)
                     /locus_tag="JN125_000071"
     CDS             complement(81142..81771)
                     /locus_tag="JN125_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004999972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HAY8869980.1"
                     /translation="MNAQYNEILRFIRNMIRTGIIVETDLNAGRCRVQTGGMCTDWLQ
                     WLTHRAGRSRTWWAPSVGEQVLILAVGGELDTAFVLPGIYSGDNPAPSASADALHIRF
                     PDGAVIEYEPETSALTVSGIKTASVTASDSVTATVPVVMVKASTRVTLDTPEVVCTNK
                     LITGTLEVQKGGTMRGNIEHTGGELSSNGKVLHTHKHPGDSGGTTGSPL"
     gene            81762..82931
                     /locus_tag="JN125_000072"
                     /pseudo
     CDS             81762..82931
                     /locus_tag="JN125_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005032126.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(83034..83486)
                     /locus_tag="JN125_000073"
     CDS             complement(83034..83486)
                     /locus_tag="JN125_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001001795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HAY8869981.1"
                     /translation="MNEFKRFEDRLTGLIESLSPSGRRRLSAELAKRLRQSQQRRVMA
                     QKAPDGTPYAPRQQQSARKKTGRVKRKMFAKLITSRFLHIRASPEQASMEFYGGKSPK
                     IASVHQFGLSEETRKDGKKIEYPARPLLGFTGEDVQMIEEIILAHLNR"
     gene            complement(83479..83946)
                     /locus_tag="JN125_000074"
     CDS             complement(83479..83946)
                     /locus_tag="JN125_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001406878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY8869982.1"
                     /translation="MLKPDSLRRALTDAVTVLKTNPDMLRIFVDNGSIASTLATSLSF
                     EKRYTLNVIVTDFTGDFDLLIVPVLAWLRENQPDIMTTDEGQKKGFTFYADINNDSSF
                     DISISLMLTERTLVSEVDGALHVKNIPEPPPPEPVTRPMELYINGELVSKWDE"
     gene            complement(83909..84082)
                     /locus_tag="JN125_000075"
     CDS             complement(83909..84082)
                     /locus_tag="JN125_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001300730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage lysis protein"
                     /protein_id="HAY8869983.1"
                     /translation="MSLCPMPGSDPQKNGDLSADIRQLENALARCASQVKMIKHCQDE
                     NDAQTRQPAQGAD"
     gene            complement(84054..84479)
                     /locus_tag="JN125_000076"
     CDS             complement(84054..84479)
                     /locus_tag="JN125_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001585210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysB family phage lysis regulatory protein"
                     /protein_id="HAY8869984.1"
                     /translation="MSKLMIVLVVLLSLAVPGLFLVKHENASLRTSLDRANSVASGQQ
                     TTITMLKNQLHVALTRADKNELAQVALRQELENAAKREALREKTITRLLNENEDFRRW
                     YGADLPDAVRRLHQRPACTDASDCRQRLPESEPLPDAGQ"
     gene            complement(84467..84892)
                     /locus_tag="JN125_000077"
     CDS             complement(84467..84892)
                     /locus_tag="JN125_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000736575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein lysA"
                     /protein_id="HAY8869985.1"
                     /translation="MKKLSLSQMLNVSLALMLALSLIYPQSVAVNFVAAWAILATVIC
                     VVTGGVGVYATEYVLERYGRELPPESLAVKIVTSLFLQPVPWRRRAAALVVMVATFIA
                     LVAAGWIFTALIYLVASVFFRLIRTACRQRFEGREPCQS"
     gene            complement(84907..85404)
                     /locus_tag="JN125_000078"
     CDS             complement(84907..85404)
                     /locus_tag="JN125_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 104 protein"
                     /protein_id="HAY8869986.1"
                     /translation="MPVINTHQNIAAFLDMLAVSEGTANHPLTKNRGYDVIVTGLDGK
                     PEIFTDYSDHPFAHGRPAKVFNRRGEKSTASGRYQQLYLFWPHYRKQLALPDFSPLSQ
                     DRLAIQLIRERGALDDIRAGRIERAISRCRNIWASLPGAGYGQREHSLEKLVTVWRTA
                     GGVPA"
     gene            complement(85404..85685)
                     /locus_tag="JN125_000079"
     CDS             complement(85404..85685)
                     /locus_tag="JN125_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000123123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holin"
                     /protein_id="HAY8869987.1"
                     /translation="MTAEEKSVLSLFMIGVLIVVGKVLAGGEPITPRLFIGRMLLGGF
                     VSMVAGVVLVQFPDLSLPAVCGIGSMLGIAGYQVIEIAIQRRFKGRGKP"
     gene            complement(85689..85892)
                     /locus_tag="JN125_000080"
     CDS             complement(85689..85892)
                     /locus_tag="JN125_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000846400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY8869988.1"
                     /translation="MKTFALQGDTLDAICVRYYGRTEGVVETVLAANPGLAELGAVLP
                     HGTAVELPDVQTAPVAETVNLWE"
     gene            complement(85892..86401)
                     /locus_tag="JN125_000081"
     CDS             complement(85892..86401)
                     /locus_tag="JN125_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005228322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head completion/stabilization protein"
                     /protein_id="HAY8869989.1"
                     /translation="MMTLIIPRKEAPVSGEGTVVIPQLAGDEPVIKNTFFFPDIDPKR
                     VRERMRLEQTVAPARLREAIKSGMAETNAELYEYREQKIAAGFTRLADVPADDIDGES
                     IRVFYYERAVCAMATASLYERYRGVDASAKGDKKADSIDSTIDELWRDMRWAVARIQD
                     KPRCIVSQI"
     gene            complement(86501..87250)
                     /locus_tag="JN125_000082"
     CDS             complement(86501..87250)
                     /locus_tag="JN125_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001540320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase endonuclease subunit"
                     /protein_id="HAY8869990.1"
                     /translation="MTSPAQRHMMRVSAAMTAQREAAPLRHATVYEQMLVKLAADQRT
                     LKAIYSKELKAAKKRELLPFWLPWVNGVLEQGKGAQDDILMTVMLWRLDTGDIAGALE
                     IARYALKYGLTMPGKHRRTPPYMFTEEVALAAMRAHAAGESVDTRLLTETLELTAAAD
                     MPDEVRAKLHKITGLFLRDGGDAAGALAHLQRATQLDCQAGVKKEIERLERELKPKPE
                     PQPQPKAATRTPRKTRSVTPAKRGRPKKKAS"
     gene            complement(87254..88327)
                     /locus_tag="JN125_000083"
     CDS             complement(87254..88327)
                     /locus_tag="JN125_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001248534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein, P2 family"
                     /protein_id="HAY8869991.1"
                     /translation="MRQETRFKFNAYLSRVAELNGIDAGDVSKKFTVEPSVTQTLMNT
                     MQESSDFLTRINIVPVSEMKGEKIGIGVTGSIASTTDTAGGTERQPKDFSKLASNKYE
                     CDQINFDFYIRYKTLDLWARYQDFQLRVRNAIIKRQSLDLIMAGFNGVRRAETSDRSS
                     NQMLQDVAVGWLQKYRNEAPARVMSKVTDEEGHTTSEVIRVGKGGDYASLDALVMDAT
                     NNLIEPWYQEDPDLVVIVGRQLLADKYFPIVNKEQDNSEMLAADVIISQKRIGNLPAV
                     RVPYFPADAMLITKLENLSIYYMDDSHRRVIVENPKLDRVENYESMNIDYVVEDYAAG
                     CLVEKIKVGDFSTPAKATAEPGA"
     gene            complement(88386..89240)
                     /locus_tag="JN125_000084"
     CDS             complement(88386..89240)
                     /locus_tag="JN125_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001074418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GPO family capsid scaffolding protein"
                     /protein_id="HAY8869992.1"
                     /translation="MAKKVSKFFRIGVEGDTCDGRVISAQDIQEMAETFDPRVYGCRI
                     NLEHLRGILPDGIFKRYGDVVELKAEKIDDDSALKGKWALFAKITPTDDLIAMNKAAQ
                     KVYTSMEIQPNFANTGKCYLVGLAVTDDPASLGTEYLEFCRTAKHNPLNRFKLSPENL
                     ISVATPVELEFEDLPETVFTALTEKVKSIFGRKQASDDARLNDVHEAVTAVAEHVQEK
                     LSATEQRLAEVETAFSALKQEVTDRADETSQAFSRLKNSLDNTESLTQQRRSKATGGG
                     GDALMTNC"
     gene            89414..91186
                     /locus_tag="JN125_000085"
     CDS             89414..91186
                     /locus_tag="JN125_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001357052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase ATPase subunit family protein"
                     /protein_id="HAY8869993.1"
                     /translation="MTITTDTTLLHDPRRQAALLYWQGFSVPQIAAMLQMKRPTVQSW
                     KQRDGWDSVAPISRVEMSLEARLTQLIIKPQKTGGDFKEIDLLGRQIERLARVNRYSQ
                     TGNEADLNPNVANRNKGGRRKPKKNFFSDEAIEKLEQIFFEQSFDYQLHWYRAGLEHR
                     IRDILKSRQIGATFYFSREALLRALKTGHNQIFLSASKTQAYVFREYIIAFARLVDVD
                     LTGDPIVLGNNGAKLIFLGTNSNTAQSHNGDLYVDEIFWIPNFQVLRKVASGMASQSH
                     LRSTYFSTPSTLAHDAYPFWSGELFNRGRASAAERVEIDVSHNALAGGLLCADGQWRQ
                     IVTIEDALKGGCTLFDIEQLKRENSADDFKNLFMCEFVDDKASVFPFEELQRCMVDTL
                     EEWEDYAPFAANPFGSRPVWIGYDPSHRGDSAGCVVLAPPVVAGGKFRILERHQWKGM
                     DFATQAESIRKLTEKYNVEYIGIDATGLGVGVFQLVRSFYPAARDIRYTPEMKTAMVL
                     KAKDVIRRGCLEYDVSATDITSSFMAIRKTMTSSGRIATYEASRSEEASHADLAWATM
                     HALLNEPLTAGISTPLTSTILEFY"
     gene            91186..92220
                     /locus_tag="JN125_000086"
     CDS             91186..92220
                     /locus_tag="JN125_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000038204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HAY8869994.1"
                     /translation="MSKKKGKTPQPAAKKMTASAPKMEAFTFGEPVPVLDRRDILDYV
                     ECISNGRWYEPPVSFTGLAKSLRAAVHHSSPIYVKRNILASTFIPHPWLSQQDFSRFV
                     LDFLVFGNAFLEKRYSTTGKVIRLETSPAKYTRRGVEEDVYWWVPSFNEPTPFTPGSV
                     FHLLEPDINQELYGLPEYLSALNSAWLNESATLFRRKYYENGAHAGYIMYVTDAVQDR
                     NDIEMLRENMVKSKGRNNFKNLFLYAPQGKADGIKIIPLSEVATKDDFFNIKKASAAD
                     LLDAHRIPFQLMGGKPENVGSLGDIEKVAKVFVRNELIPLQDRIREINGWLGQEVIRF
                     KNYSLDTDNS"
     gene            complement(92625..93554)
                     /locus_tag="JN125_000087"
     CDS             complement(92625..93554)
                     /locus_tag="JN125_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000109483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4238 domain-containing protein"
                     /protein_id="HAY8869995.1"
                     /translation="MSVARHHHFLSQCYLKGFTSNGGKKSKLTVIDLKERKTFESNTR
                     NVGGVRDFNRLELDGVDPNYLESSLAEFEGSVATHLRKLEEGGEFSGETKDVILEFIS
                     LLAIRTPAQREHLSSPLKQIAKFIMKSSVSSAERWDDCKLAYEKEMGESLPYDLAYEK
                     IKNFVDGDNFEINVIREFMIDMEMKCVPVITKLLHQRNWSLMTISDGQGSFITSDNPV
                     CLMWTNPELARGPYSPGFGVKDTLVLFPVSKNLLLAGEFDGHEGVFSCNEEQAAVFNT
                     SVIRHTAERIFSSNDNFKFLDSSKKMKQGKSLV"
     gene            complement(93658..95829)
                     /locus_tag="JN125_000088"
     CDS             complement(93658..95829)
                     /locus_tag="JN125_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000268616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication endonuclease"
                     /protein_id="HAY8869996.1"
                     /translation="MAVKASGRFVPPSAFAAGTGKTFTGAYAWNAPREAVGRERPLTR
                     DEMRQVQGVLSTINRLPYFLRSLFTSRYDYIRRNKSPVHGFYFLTSTFQRRLWPRIER
                     VNQRHEMNTDASLLFLAERDHYARLPGMNDKELKKFAARISSQLFMMYEELCDAWVDA
                     HGEKESLFTDEAQAHLYGHVAGAARAFNISPFYWKKYRKGQMTTRQAYSAIARLFNDE
                     WWTHQLKGQRMRWHEALLIAVGEVNKDRSPYASKHAIRDVRARRQANLEFLKSCDLEN
                     RETGERIDLISKVMGSISNPEIRRMELMNTIAGIERYAAAEGDVGMFITLTAPSKYHP
                     TRQVRKGESKTVQLNHGWNDEAFNPKDAQRYLCRIWSLMRTAFKDNDLQVYGLRVVEP
                     HHDGTPHWHMMLFCNPRQRNQIIEIMRRYALKEDGDERGAARNRFQAKHLNRGGAAGY
                     IAKYISKNIDGYALDGQLDNDTGKPLKDTAAAVTAWASTWRIPQFKTVGLPTMGAYRE
                     LRKLPRGVSIADEFDERVEAARAAADSGDFALYISAQGGANVPRDCQTVRVARSPSDE
                     VNEYEEEVERVVGIYAPHLGARHIHITRTTDWRIVPKVPVVEPLTLKSGIAAPRSPVN
                     NCGKFTGGDVPVMHPTPSEHAAAVLNLVDSGVIGWDDPEVVTVLRSALKHGAPRPNWQ
                     QRNCEPLKPYQIAPSGRMTKAERSQIPRIHFELALIGKTYQ"
     gene            complement(95819..96094)
                     /locus_tag="JN125_000089"
     CDS             complement(95819..96094)
                     /locus_tag="JN125_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000027668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8869997.1"
                     /translation="MSIRIEIGERYVVTSDSFQFILHEKKRAESGKNAGQEWLAVVGY
                     YPKLSQLVSGLMHHDILTGSAKSFADLNAQVEQLSRRCSEAFGSYGR"
     gene            complement(96091..96315)
                     /locus_tag="JN125_000090"
     CDS             complement(96091..96315)
                     /locus_tag="JN125_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016242005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraR/DksA family transcriptional regulator"
                     /protein_id="HAY8869998.1"
                     /translation="MPDNVDFIQEQQTELLERQINAARVKHCGVSSLVCEECDAPIPA
                     ARRAAYPSATRCVSCQSVFEAKNKHYRRMA"
BASE COUNT        23790 a        25201 c        23022 g        24347 t
ORIGIN      
        1 tggttttata aaaatattga cagtgaataa aatagcacat taaaatcgtc ttatttatat
       61 cctttgggat tgtttttttg ccaacgccaa gaatcaatta tcattgtatc taaatcatat
      121 cgagaagacc accctaattc taaaaatgct agagatggat cagaccaaca ttcagctata
      181 tcaccaactc gacgaggttt gaaacaataa gggatatcaa ttccagtaca acgtttaaag
      241 gtatttatca catcaagaac tgaataacca acccctgtac caagattata tactttataa
      301 tttcccccaa aattacggtg ttctaaagca gctatgtgcc cttcagccaa atccataaca
      361 tgaatataat ctctaatgcc tgttccatca ggtgtaggat aatcatttcc gaatactgat
      421 aaatatttta gattaccaat agccacttga gtaatataag ggattaaatt atttggaaca
      481 ccattaggat cttcacctaa tagaccagaa gagtgggctc ctacaggatt gaaataacgc
      541 aaaatagtaa tacgcattgt tggctcagcc aaagctatat ccttcaaaac cctctctact
      601 ataagttttg aaaagccata tggattagtt gttccgccaa cgctactatc ttccttcaaa
      661 ggaatagttt caggcttacc atacactgtt gcggaggagc taaaaataaa actaataacg
      721 ccagcgcgca tcatttcttc aagtaaaaca atagttccgt taacattgtg atcataatat
      781 tccaatggat ttgaaacaga ttcagcgacg gcttttaatc ctgcaaaatg aataacatct
      841 gtaatatcat gatactggaa aatatgtttg agttttttcc tatcacgcac atcaccatga
      901 taaaatagag gcctacgtcc acaaattttt tcgacccttt ctaacgactt agacgatgag
      961 ttcgatagat tatccaacac caccacattt tttccgtatg ataataagga taatacagta
     1021 tgtgaaccaa tgtaacctgc accaccagta accaaaatag tcataaaact ccttatattt
     1081 catctatctg cctaggatat aaaacaagaa tataaacaca ttataaatag tataaactgt
     1141 gaaagaataa aaatttagaa tagttaagcc caatgttact ataaaaatac aatatgtaag
     1201 tatacgttat ttttctaaac atctcgacat attgtatgag tctaacacta tattgcattt
     1261 ttttcgtgta aattatgttc tagtggtgtc agtaattcga gcaatttatg aggcctttta
     1321 ttcttgtaca gtatgcaata ttgagcctgt ttatgattga catattcaga ttttcaaaga
     1381 gcaattcttc attaaactca ataaacggct atctcagtga tcggttaaag cgctcacaga
     1441 tggtgttcat tttcggcgta tcgagataag cctattggtg cctgatagcg gcttcctgta
     1501 gctttttgtc aaattttccc aggaactctt ccccataatc gggtatattc tggttgattc
     1561 caacaggtaa caaccgagct tgatggcaga agaaactcat gattacatca ctgttaagcg
     1621 acgttaccgc caccgccaaa gcgtagttgc tgcgttcgtc aatcacggta ataacataac
     1681 gccgattctg agctcaatat aagctcaccg gtctttagcg ggctaatagt accttggact
     1741 tgaagtctgg gaacccagtt acaccagtat tagccacatt ttatcatgtg ctgcctagct
     1801 cattcctcca atagtggaga cgctcgggca ggccaaatgc tactgttcac actacagatt
     1861 cagacggtca aaaatctgtt cttttccaag gttgagaagt cctattctaa ttcatcatat
     1921 ttctttcaaa atttctggat gtcatagttt tgtaagacat actagaaaga tttactactt
     1981 gagataagca cttccgagcc tatatattaa acgcgtattg atacacaaaa attttctgcg
     2041 gatgcattga ttccatgtct ttccctaaaa tgcagggttt tcattcttaa ttttgcaata
     2101 tcaggcatgg cattgtattc catcgcatag attgttgcac ggtaatgccc gaaacacctg
     2161 acgccgatat gttggttcaa cataacaatc tctcctttct tatctggaga caattgcaac
     2221 atctctgaaa acttacactc tgcccatcgt gtacataacc aaagacaaca gaaatatgtc
     2281 acgccttttt ccatattcca atttatattc cttactctta taacacaagg agtatctgaa
     2341 tatataagag tgaaggagtg ctttggcaaa aatatttaat tcaaagatat aaaacacaat
     2401 cgatttagta tcaaaagatt actcagtaat ctttcaccaa ataaattagt tcaaaataac
     2461 actacagcaa tggcaataaa accattccat gaaatagcaa cataaacacg caaatagaat
     2521 ttccacgtaa atttataaca cttactaatc caaaacatta tttattatag attgtattca
     2581 tgggattatc acctggttca gttatagatt tgtgatctat gtagttcact attcttacag
     2641 ttctcaaaaa acttaaatta aattgttgcg ctattaccct atagtcttta aatacccata
     2701 aaaacaaagg caaaaaccaa tttgttttac agatatctag aataagataa tatgtcaaca
     2761 attaacgagt ttctactgtt gtttgttaat aaaaacctgc aattaaaata ataatcatgc
     2821 attaaccgaa ccccttctta ttaatctttt tttatgacaa atataaaaag atgaaaaaat
     2881 atatatatat attattttca tatatgcaac attcaaaaat ataacctcgc ctttataatg
     2941 aaaagaaaaa ctgagtattg taatcattaa tgcaactatt ttaggtttga tgctattagc
     3001 agcataaata gtcaaaaaaa taaaaaacaa aaaataaaaa ataaccgatg gtaccgcacc
     3061 caaaaataat gctaaccgca taaatccagc atcggtcccg agataatatg tcccatcctt
     3121 taacgtatag tacccatcac caatgaagat ctgtttttct gttaacggga aatacatatt
     3181 aaataattca tctgtagatg ttgttgataa ctttcctgaa tctaaataat aatataacat
     3241 ttgaaaagaa taatccgaat attttttcaa gatatcataa acatgttcat ttaaaaaaaa
     3301 tctccaaaaa ataaataaaa acagagatac ataaatcaaa atttgaagcg cccgataaaa
     3361 cttcttttta taatcagagc aaataaaact atatacccct ccgaggacaa accccaaaac
     3421 agccgtacgc ccagcagaaa ttgacgcgaa cagcaagagt atgataaaaa ataattttaa
     3481 aaagaaagga atattacagt cttcctcatt aaaccaaaca attgaaagaa aagataataa
     3541 tgacataatt atagcaagac caaaggcaac agaacctgat atacctaatc ccctgatgcc
     3601 tccatatgta ttactcataa attctatttc ttcttttgtt ctaataatac tttgaatata
     3661 agcatttata ctgggaaaaa acatcatcag aataataaaa aaggattgta agagggcaat
     3721 tagaaaaaac aatttcaaca cattatcatt gttatgctgg attaaatgcg acgcaattat
     3781 aacagagctg aataatgcag ctaaattatt aaagataacc cccatgatag ataaatctcc
     3841 tgtaccattt aataccaatg aaatacaaga aaaaaagagc atgcaggcca aagacaaaaa
     3901 cgcaataaaa aatattcttg tacttattag actaaaaaaa acagtcctta tcctgatatt
     3961 tgtaattaaa taaatcaagg aaaaaatata tataagatag cctgaattaa aaaaaacagg
     4021 gatgctaaaa gcaaacacaa ataaaaacaa caaaaataca tcaaaaaaaa ccttcataaa
     4081 aattcctttt gtgacacgac ccgataataa atatcaacca tacgctttgt gtttttattt
     4141 atatcaaaca tttttattat tgtatctcgg ttatattcaa tcgaacacct atattgatta
     4201 ctatctatta atttcacaca ccttgaaaaa acagatttca tgtcaatatc atcatgcaga
     4261 ttcaaataca ttgcatgatt tcctaatagc tctctgtttg catcgatgtc tgatactatc
     4321 ggaaaacaat tacataaaac gccctccatc aaagataatg gagcaccatc attgctagga
     4381 atactaagaa caaaatcaga tttatgaaga atcgacctta attcctcttt ttgaataaac
     4441 cctattaaat ttactttata attatctccc tcacattttt ttgtgagttc tattatctta
     4501 tcatgtgtgg tctttgacga tgagcggcct agtatattga tattaaaaaa gtacccttta
     4561 caatcataat ctttcatatc aataacagct tctaaaaagg actctatgtt ataaatatta
     4621 tcccaatttc ttacagaagt tattgttata catttatcgt cccttatgct tgacgttttt
     4681 tcatctgaaa agaaccccac atctacacca tattgaaaag tatgtattcg ctcctgattc
     4741 acattgaaat acgatattat tttatttgtt atatgcctgg cgggtgaatt tacaacacaa
     4801 aaacttttca ttgcttttac atatattttt cctaatatcc ctctcttttt tatagtattg
     4861 ttaatgtcac ttccccatac tgagagtatc ttctttactt ttctaggcaa aacacatgaa
     4921 attaaaccat aagaactaaa aaaatggaca tgaaccaact caggctttaa taaaaaaaaa
     4981 taaaaaagaa gaaaaacagg tgcgtatata aaatcaaatt tagtttttgt aagtcttggt
     5041 atcttatata tctctcctat tccaacattc tcagaaatac ttttgtcata gtgtagtgtg
     5101 acaattctat aatcaatata ttctttggaa ccatgaatcc agttactaat atgaccagat
     5161 atcatagggc caaaaacaag tactctcatt ttttccccat tcgttttctt aaatttaaat
     5221 aataattttt agcatggagt ggagacaacc acccaataca tttccccaca atattgtgct
     5281 tgatttttat tgattcaatg acagagaata aaaaaaactc aactgaaaag ttggttgcat
     5341 taaataaatg aataggtgca acttcatttt ttctgaaaaa tttagataaa atagtcttgt
     5401 tttttatttg gataaacttc ttacaactgc caattgagcc atgccttatc ctataaaata
     5461 aaaccacgtc atctatattc cttacaatac atccactcaa tacagcccta cacaaaaaat
     5521 cataatcttg agcagcatct aaacgcctgt aaccacctaa tttataataa agctctgacc
     5581 ttaacaacca agttggatga attatttcat tcccccacga aaaatctact gggttcatat
     5641 taaaataatc cctaacaaca ttatcgttct catcaataac aacagcctgt ccaccgacta
     5701 aactgacatc agaatgctta ttcagatatt ctaattgctt tttaaaacgc ccgttaataa
     5761 caatatcatc agcatccatt ctggcaataa aatcatagcc attacacgcg ccaaaaatta
     5821 atttatttaa acttgccgcc aacccttcgt tctcattaaa aaaaacaacg cacacatcat
     5881 ttctggcact aacttctttt aaatataaac tctcaatatg aggaatatct tcatttctcc
     5941 tatcgactcc aattattaat ttatatttca cattcttctt ttccaatctt tccagatcct
     6001 gaagagtact gtctactgcc ttttttagta ttatgtaact ctcattatag taagtcatga
     6061 ttacagcaag tttttgcatt tcaaatccca cagacaacaa attgtaataa taattggcga
     6121 tagaactaca gcatatacta tataataata tgggaataat gaagaaaata aaaaaataga
     6181 tattaacgat agtacattcg aacaaatcac atattttact atattttttg atgagtgtat
     6241 catatgaatt aattgagtta aatattgatt gagtatactt gggataacag ctaggctaaa
     6301 tgaaaatatt agaaaaataa aaaaacgaga tatttctccc tttgtcatat aaatagagac
     6361 atatgatatt gcagccacac atataaaaac aacgatgctg taaaacaaca atttgagtag
     6421 ctgacttctg tattttactt ccacatagtt agttttgtgc cctacggaat aaaaaacctc
     6481 tgaattacat ttatttaaga cagtgataat tgaattggaa aatgttacgg atactgtcac
     6541 aaatcgcata acgacgttat atatccctaa caagctagca tttcctgatg ccaatatagc
     6601 agaattaatt ataggctgaa taagtgcatt taccccgcta tatatgtaca tatgcttaat
     6661 gtttttcaaa taatttttaa tatgtctaaa tgatattttt cccaacctat tatcattctt
     6721 tatttttatc aaactaataa gtccaaccag agcagatgct atcgcctgaa taaaaataaa
     6781 catgtgtaat tcaaaagcat aatataaaac aaataaaacc gctaaaattt taactaccaa
     6841 ggacactatt attataaacc taaagttatc ctttgctata tagtaccaac tattaagcat
     6901 gccaaatcca aacgagaata ttacgacaca aaaataatca ctcttccctg cagtctctga
     6961 aattataata aacacaatcg cacatacaaa aaaaaacact aacttaaaga aaatcgctga
     7021 aataacaaac gactgctgag caatttcatt acccttaagc ttatttaatt gttgtacgcc
     7081 tactgtattt agacaagcat cataaataaa tgaaataaaa gttgatatag ttaacacata
     7141 agaataaact ccatatccct ctaaattaaa tctagttaaa accagcggca taattattat
     7201 tgggacaata taatccacta gctttagagc acttacagag ataatacttc ttaaaaaact
     7261 agacatcttt tatttttcta gccggttgcc caacatatac acctggttcc tctaagtttt
     7321 ttgtaactat cgctccggca ccaacaataa tattactaca gatctccact cccggtaaaa
     7381 caattgctcc agcacctaac tgaacattat cttttattac taccttatct tttttatatt
     7441 taaagatttt cttttcaaat accaaacctg tactgagaat tttactacca gcagacagta
     7501 ctacattatg gcctaaaatg actcctccac tagcatttat atacacaaaa tcattaattg
     7561 aaaaggaatt accgaattta agattcgatg gttctactat cttataagga ccataaatat
     7621 gggattgctt ataacgtttt actccaaact cacagataaa acataattta taccatatta
     7681 attgaattct agagaatatg ctcatagctt taactccttt ccgagccttt catcccattc
     7741 aaatggagtt atcttatcat accccgatcc ttgatgaaat gttaattcgc ctacatatat
     7801 tttttcttga acaagatata aatcaaccct aagatatttg aaaccttgac ttagtttttt
     7861 agatatattt agagcgtttt ctaactgact tggtttacta atattcttca cattaaattt
     7921 tgaaagatct tttccccttc tcgcccagca aaaatctaac atattccaac tagtatcata
     7981 tatagaacga taattccctc cctcacgatc taacgacaca taaataaatt tcggttctcc
     8041 attaaaacaa tgaattttta tatcattagg aactttccct gcctcatcct ctaataacct
     8101 ttcaacaatt atacgcctat caatattttt atattgccat tctcttccgt gatggtaaat
     8161 attacaatta agtgttctaa taaatttcca cttaacctca tcaatattca ataaattctt
     8221 gtctctaaca ataaaataat cgccacaata gtgattcgat tttataacaa acttaccctg
     8281 tggtaaagac tcaaaggtaa tatcaaaagg ggtatcataa acctttaaca aatcaattat
     8341 attatctctc gttcccagcc tattttccac atattctcgc actctaattt tatcagcaca
     8401 tattgtatgt aatggtgttc tgtcatttag tttcaaccat tgtaactttt gatttaatgt
     8461 cttcggattg ttcaatccga gagggtatcc ctgatattca agaaactgct tttttataat
     8521 caagctatct ggagtaatca gaacgacaaa gcatttcaat aaatacttta tattatacaa
     8581 tatatacatc aatttcatgg aaagattttt tctattcata ttagaatctc aaataattta
     8641 tgctgtctta cccattctct tgcctggcct ttcgatacta ctaccccaac gttgctcatt
     8701 tttaatattg gtaaatcgct aatagaatca gagtaagttg ttatatgata ctcagaaaca
     8761 tctaacgaca aaacaccttt taacattaat actttattat atcccatgca attcttgcca
     8821 ctaattctcc ctaaacacct gcctctatta tcaaatttaa tttttgtgca tacaaagcta
     8881 ttaatctcta atgctttaac taaatattga atataaatat catagcctcc agaaataata
     8941 ataacctcat ctccatcttt taaatgctta ttcaatatct taattatggc aggattaact
     9001 ctgcgcaata taatttcatt aacgtaatca cgagccatta cattaagaat atccctttca
     9061 atatttttta acatatacaa taaaattctt ttccttaaac tttcccccaa tcttatttta
     9121 tttattattt gttcgatttt gaaaatggat aatgaagatg ccaccctatt taaagtctgt
     9181 attttgatgt tattacatat ccccaaacga tctattacat agtatataaa cccatcgcca
     9241 gtttgaaaat caactaaggt ttcacacaga tcaaataatg ctatcttttt taacttcata
     9301 catctgctct aaaattctga ttacatacaa catttgtttt ttcgttccaa tagtaattct
     9361 gacacataac tcgacctctt tcatatgaga taaatcacga acaaatatta aattagattt
     9421 taaacgttca atgaatgctt ttttatcatt catcgattta aactcaataa ccaaaaagtt
     9481 cccctctcca tatacaatat ttttttgacc tatatttata tttttcaact tatcataaaa
     9541 aaaacgctta gcctgattaa cttccttaac ataattattc atatattcaa cttcgtctaa
     9601 tgcattcaaa gcggcaatct gacttagctg aggtatattt tttgcatttc tgactttatt
     9661 tattgcacct aacaaatctt gtgacgctat tatatatccc attcgcatcc ctgccaatga
     9721 aaatgctttg gaaaatgttc gcgtaataat tatgttatta aaggagttta caaaatcagc
     9781 acacgttaat tttgcaaatt cataataggc ttcatcgata ataaaatata ttcctttata
     9841 tttttctaca agataatgta tatctccttt aggaataaga gtacctgtag gattatttgg
     9901 gttacataaa taggccattt gaggttgaaa cttattgaga tcgctttcaa acttctttaa
     9961 tgaccaatag taattatctt caaaaattga ataacaaatt gttgcccctt gagcttcacc
    10021 tgttgttctg aaattatcat acgtaggtgc taacatcaat attttatcat tttcattaat
    10081 taatgtacga atgatagact cgtgtgctga gtctgaacta caaaaatact ggatatattc
    10141 ctttggcacc cccacatagt ttgatatctt tattattaaa tctttattgc tcacatctgg
    10201 ataataccta attagattat ttaccaacga attcattaat gcatttttta ctctttctgg
    10261 cggttcaata gtagattcgt tccaatctaa ttttaatatt gtttctttat tttcactctc
    10321 ccatatagcg tgggatgcaa gtttatatgg tttcattttt tttacgaact tattcaattt
    10381 ttactccatt acgttctgtg cataacattt aaagaattta aacatactca agaaaacaca
    10441 atatcttatc ttagataatt ttcagaattg ctcctatgtt tcataattcg tatataagcc
    10501 catacattta ttttattcta ttcttaatat aatctcgtga agaataatcg acatattgtg
    10561 tcaaaaaaaa atatatatct attccacata ctgaatatct tcactaactt ctgcaaattg
    10621 agagcataag taatcagaaa cagaatattc aatatattat actttccatg cttgtctgta
    10681 gtcagaaata tagagacacc ttattaaatt tttaagtttt atcttactct ttttgtatat
    10741 atactgagta tttggacatt tataatatat aaaataatag cgtttgatgt taaggaaaat
    10801 ctccattatt gaatatttat cgccaattgt ttagtaaaaa atcagtgcca catgttttct
    10861 cttatatgca cgctaccgcc cctggcttta cagctaccag agcactgcat gcatgcctac
    10921 gatgtgacga gcgttaccca ctcgcgctaa acccgaaaaa ttcaaacgct aattgtctta
    10981 ccaatccgct ctggaaacaa ggaaaatcct ggaaaacttt gacgaaaatc ctattgctaa
    11041 ctctttgtta ttctgattgt ttatataaaa caacggcagg aatattcgca acaaattacc
    11101 ttcgccgcaa atcttcacag ccgttataat tttcttatca accgttacat ccggtcagat
    11161 tttcattact cgcttaacaa cttctcaatg cctttgcgga acttagcgcc ttccttcagg
    11221 ttacgcagcc catacttcac aaacgcttgc atataaccca ttttctttcc gcagtcgtaa
    11281 ctgtccccag tcatcagcat tgcgtcaact gcttgttttt ttgccaactc agcaatggca
    11341 tcagtcaact gaatacgtcc ccatgctcca ggttgagtac gctccagttc aggccaaata
    11401 tcggcagaaa gcacataacg ccctacagcc atgatgtctg agtccagcgt ctgcggctga
    11461 tccggttttt cgataaattc aacaatgcgg ctgactttac cttcgcggtc cagcggctct
    11521 ttggtctgaa tgacggagta ttcagagagg tcacccggca tacgttttgc cagcacttgg
    11581 ctgcggcccg tttcgttgaa gcgcgcaatc atggcagcaa ggttgtagcg cagcgggtcg
    11641 gcgctggcgt catcgataac aacgtctggc agcaccacga caaatgggtt gtcaccaata
    11701 gcaggtcgtg cacataaaat ggagtggcct aaacctaaag gttcgccctg acgcacgttc
    11761 ataatggtca cgcccggcgg gcaaatggac tgtacttccg ccagcagttg acgcttcacg
    11821 cgctgttcaa ggagagattc taattcataa gaggtgtcga agtggttttc gactgcgttc
    11881 ttggacgcat gagttaccag gaggatttct ttgatccctg cagccacaat ctcgtcaaca
    11941 atgtactgaa tcattggctt gtcgacgatc ggtagcatct ctttgggaat cgccttagtg
    12001 gcaggcaaca tatgcatccc aagacccgct acaggaataa ctgcttttaa attcgtcatt
    12061 atttcatcca cctgtaaaat ggttgctgaa ttatagcttg ttcgattttt ttcgccagca
    12121 tcaattaccc tgaattgatt actgaattac ttgtgatgtt acgccgcttc gttgtggatt
    12181 gcagtagcat tgttcctaag tatggctcca tttttccagg aatggtcgca aatctactcc
    12241 ctccgttctg gcaatctaaa gttaatcttt tccacattaa caatatggtg attaatcctg
    12301 tcgatatcga cggagctttg ccctctttca ttcactgcat gaacatttgc aagagatagc
    12361 agtgtttctt ttttcgccat aaagacgccg cgaacgtctt tgcgcatgtc gaagttcatg
    12421 ctcaatgcgg gtccaacaga ggattcctgc atcaccttga tattacgcat aaaaagatgt
    12481 tgcggtttgt tgtgtaactc cagcgacgca cgcttcatct caatgttagt cagcgccaca
    12541 aaggagacag cattcccggc ggagatttgg atgccgcgca atttataagc aaggtgagtg
    12601 ttatccagct gaatattatt cactcggaaa ttttgcggta tcgagagata tttgccttta
    12661 attaccccat agccgattaa cattccggcg ctattaatca tttcaatatt atcaatcacg
    12721 aaattgtcac aaccgtaaat agcgactgtg gcgttatcaa taccagcttt cttactgaaa
    12781 tccggcgtga tattgcgggc tttgatatta cgaataacaa aatgtttacc attttcaaca
    12841 tggatcaact gccgacaatc cgatcccgtg atattcgcca caacaaagtt tttcactgcc
    12901 tggtcttccg ggtagttgtt atcataagtg cttcccgcaa gacctatgcc aatgccccag
    12961 ttgattttgc cgttagtaca gttgatgcgc tcgatgacat ggtcagatat caaaatatca
    13021 cggtcgttaa ttgccacgtt ccattcaatg gcatcgccct gtaagtcgct gaacttacaa
    13081 ttggtgatgt tggcaccgat tatctggtta tgaaatccct ggcgtaagat ggcgtaatta
    13141 gcgtggctaa cggtcaggtt atcaatggtc aggttgcgca tgacccgttt gtttttgccg
    13201 ccgatataga tctgcgtcac cgggccaaag ccgctcatag tcagcccttt gatggtgcag
    13261 tcggaaccac gcacatccag ggtgatgtta tgcatactgc cgccctcctc ccctgtcacc
    13321 tggctgccgt cctgtaagac aaatcgccct ttgccgttgc cgcgcaggct tccaaggata
    13381 tgtaacgttt tgccagcagg aatgaagatg ccggtgttga tattgtcaca aaccaatccg
    13441 gccggcacga cgaccgtttg cccttcgctg aaggcttgtt taaatgaggc gatccagtcg
    13501 tgtggattgt agtcgttaat gttaacgatt tgtcgggcgg gcagtgcgcg agcgaaaggg
    13561 gtatggagga aggcaagcgc ggagcttgcc gtcaggaagg tgcgtcggga gagtttttta
    13621 aatggcatac gttctcctct ataaagcctg cagcaagctg gcgagttctc gattgatcac
    13681 ctgctggtta aaatcgtgtt cgactttttc gcgcgcacgt ttgacaaccg gagccagttc
    13741 gtcggtgtcc agttggctaa acgccgccag tcgttgcgcc agtgcgcgag catcgttctc
    13801 aggcaccagc cagccggatt tatcggcctc caccagttcc ggtattccac tatgaagagt
    13861 agaaaccacc ggaatgccga ccgccatcgc ttccatcagc gccaccggga taccttccat
    13921 atcgccgtcc gcacccgtta ccgaaggcaa caggaagaca tccgcgtcgt cgagcatcgc
    13981 tttcacttca tggctcggtt taaagcccgg catctccacc acatcttcca gttgatattg
    14041 ttcgatgagg gtgcgcaggc gtcgttccca cgggccaatg ccgaggatgc gatagcgaaa
    14101 tgccacgccc tgctctttca actgacggca ggcttcgatc gccacatgca ggcctttttt
    14161 ttcggttaag cgtgcgacgg aaatgatttc cagcggcgtt gcgggcgctt tcaccggacg
    14221 cgggctaaag cgcgtcatgt ccacgcccat gcgcgatacg gcgatttttt ccctcggaca
    14281 gcccattttt tgcagccttc cggcccagag atcgctgatc ggtagcatca ggtcgccacg
    14341 gcggaacagt tgctgatatt cgggagtgta gtggttgaga acgtcccgac tggagatatc
    14401 aataccgtgg aagatagtgg caattttgcc gcgaatgaca cccagttcgc gtagttttgc
    14461 tgcggttacc cccgccgggc caaaatgagc gataaagaca tcggcataaa atggtgttga
    14521 gacctggccg caaatggcag acaaaatcag gttccgcgac tctgcgccat agcgtttgag
    14581 gttgagcgcc tgccaggtat ttttacgatg aatgccgcgt aaggtctggc tggcgcggtg
    14641 gcgcagtttc gccactttgc ccgtaggttc gtcctgtaac cagcgggttc tggcggcaag
    14701 gttgtatttc gtccatgccg cgtgggtgtt ctgggtgtcg cctttttgca gcgcgacaat
    14761 ctccacttca aagcccatat caataaacgc agtgatttgg ttaagaacga aggtttccga
    14821 cgacagcgga aatttcagta aaaagaagcc gaccttcatt tcgcctcccc aatgcgttca
    14881 agcacagatt gcaccatccg cattcccatc tgacgttcgc gactgacggc ttcgctaagt
    14941 cgtgcgttca gcgccggaag atggcctaag gtatccgcaa ccatcgcttg caggctaccg
    15001 tccagtaaat gacggatatc aatcgccatc tctggtagcc ccagctgctg cataatcccg
    15061 gcggatttat gttcgtagtt gatggcaatt gccggagtgg agaaattcat cgagataatg
    15121 gctgagtgca gacgcgtacc gacggtgagt tgacaggctc caagaatttt gcccatttcc
    15181 agatcattga gttcatccat cactacgtgg taacgggcag gatcgctgat gtgctggcgc
    15241 aggttgagcg ccaccatgcg gtcgtctttg ttatagctgt cgatgcccgt acaagtggag
    15301 agcgcaatga cctgatagcc ttcgtcgaga atgcgattga ccaccccggc aaaggctttt
    15361 tcatacgctt gttgagtggt gccgagacgt ttgtcgaacg gtgccagttc gcgcagggta
    15421 attgccaccg ttttctgttg tgcggcaacg tccagccagt gttggacggc atagctggcg
    15481 gtgaaatctt cggtgtggtg atcgaccagc cacgcggtat cgacgccatg ttccactttt
    15541 gcagtggtga tattgctgcg tttcattaga tcgaggctaa ccgactcgcg caggatcagc
    15601 gcgtcacagt gaccgaaaac gtagttcgcc agttggttaa attgctcatc ctggaagggg
    15661 ccgacgctgt gaccaatcat aaacagcggc tttttcgcca taaacgtgca aagcgcatgt
    15721 tcaaactgcg gcacgccgta gagatcgaca aaaaacgatc cgccgacctg aataatggcg
    15781 tcgtaacctg acagcaggcg cacgaagtca gtgaatccct gggcgatggc gatattacgc
    15841 agcttgccag tgtcggtgac gcgtgagagc aatacctgat gttggtagcg gcgacggagg
    15901 acttttttaa cgcgcccgac aacgcccgcc gcgctgttgt gttgtttcat ttgcaggaac
    15961 agcggatcgc ccattaccgg gcggttgagt agccaggaag aactgaccgg atagcggctc
    16021 atcacgtcca cttcggcatg tggattgagg atgttgatgg catcaagtaa gccgcgcagg
    16081 atggcgctgt cgccacgatt gccgcaagtg tggttgccca gaataagtaa tttcattttt
    16141 tcctcataaa tttgatgcca ggtgaggtta tgttgttgtt tttattgcca gtgcctaaaa
    16201 caaccattca ccccgcccgt aaaagcattt tcattttttc gctgcgacaa aactgacgct
    16261 tcacttccac caccagcgga tggcgcgaca gcacaatcat caccacaaac gccagcacgc
    16321 ccgcggctat ttgcaccgcc agcagcatcc ccagcgccag ttgccctttc agcacaatgc
    16381 ccagcgcata actgaccacc agcgtcggca gcgagagata aaacggcagc cacaaactca
    16441 ggatgtactg gcgataactg gaaccgagca ccggtttaat catcacgaag taactcagaa
    16501 tggtgttgat aatctgcacc agcaggaagc cgagcgtgac gccgattgcg cccgccatct
    16561 gcccaccaat aacaatcgcc ggaataaaca gaaaggtttt gaatacgttg aatttaaagc
    16621 tgatatcgac ccgcgctttc gccatcagca gcgaaccaat cgggttcccc actgagcgca
    16681 gtagccccac aatacacagc aattgcagca ccggaataat gctgctccac ttctcaccaa
    16741 agaccagcgg tacaaagtta ttcgacacca ccatcagccc cagcagcgcc ggaaaattga
    16801 taatccccac caccgatagc agcttgtaga agttaacgcg cagcttttcg gtgtcgtcct
    16861 gaattttggc aaatgccgga aacaacacgc gggtgatgat cggattcagc ttcatcggcg
    16921 gcacaacggc cacgttgtac gccaggttgt atccccctgc tacgcccgcg ccgagaatac
    16981 gcgccagcac cagcgttgaa aggttggtgt tgagatagtt gatgatgctg tccgccgtca
    17041 gccaggcacc aaagcgtaag ttcggtgcca ccgacgccag cgagaagtgc agaccggggc
    17101 gataaatttt gcggccaaag tagccaaaca gcagcgttct taccgcacta ttgaccagat
    17161 aaccgaggat cgcggtcatc gccagcagcc agaaatgggc gctaaccacc gtaaaagtga
    17221 agcccgccag caccgcgctg gtttcgatca tgccgatttt gttgaactcc agctccttct
    17281 gcatcaacgc gcggaactgc tgcccgtggg ggatcaccac aaacgccagc gacaatgttt
    17341 taatcaacgg tgccaggtcc gggttattca gcacgtcgcc gatgagatca ctcaacaaaa
    17401 acaccgccac gcacaccacg atccccagcc cgacgttcag ccagtacagc gtggtgagtt
    17461 caaggtggct gatttctttt cgctgaataa tcgagttagc gatgccgaag tcagaaagcg
    17521 tatctgccag cgcgatgatc accagcgaca cggtaagcaa accgaactgg tggttgtcga
    17581 taatccgcgc cagcacggtc atctgcacca gcccgaggcc gatgatgatc accgtggcaa
    17641 tcgccgacca cttcgcgccg ctgatggttt tttcacgtaa gctcatatca atatgccgct
    17701 ttgttaacga aacccttgaa taccgtcagg aaaacgattt tgatatcgaa ccagacgctc
    17761 cattcgcgga tgtactcaag gtcgaactcg acgcgttttt ccattttctc cagcgtgtcg
    17821 gtttcgccac gccagccatt aatctgcgcc cagccggtaa tgcccggttt caccttatgg
    17881 cgcagcatgt agccttcaat gagctggcga tactgttcgt tatgcgccac cgcgtgtgga
    17941 cgtggaccga caatcgacat ccccccggtc agcacattga taaactgcgg caattcatcc
    18001 agcgaggtgc ggcgcagaaa gttccccact ttggtgacgc gcggatcgtt ctgcgtcgcc
    18061 tgagttacca ctttgtcgtt ctccatcact ttcatggaac ggaacttcca cactttgatc
    18121 ggcttgccat ccatgccgta gcgagtctgg cggaaaataa ccggccctgg tgaactgagt
    18181 ttcaccgcca gcgcaatgca gcacagcacc ggggagatca gcagcaggat cagcgttgcc
    18241 agcacaatgt cttccgcacg tttgagcagg cggttaaccc cggaaagcgg cgtgtcatac
    18301 agcggcacca ccggaacgcc gttcatctct tcgatacggg aatggagaat gttgaaggta
    18361 aagacatcgg ggatcagcag caccgaacag gtggtgtccg ccagttgatg gaccagtttt
    18421 ttcactcgcg cgccgtcgca catttgcatc gcgatataga cgttatgaat cttacccgct
    18481 ttcgcatcct cgaccagctg ttgcagattg cccgcccagt cgttagaaac gccgcccggt
    18541 ttcgggtcgt ggtaaacgcc caccacttca aaccctaacc acggctgatt acggaagctc
    18601 tccatcagca tttgtccggc ggctaaatcc cccgccaccg cgaccatgcg cttgttatag
    18661 ccatgattac gcagccagcc cgccccaatg cgaatacatg aacggcaaac caccagtccg
    18721 atgctggtca gcccatacca cgccagccag attttcagtt gcgtgtcgaa atcattgttg
    18781 aacgccacca gtccggcgct gaaaatcacg cttaaggtcc agttttgtag caacagggca
    18841 aattctgtcg ctgcccgaac accgcgccat gagcgataaa aatcggtgat gccacccagc
    18901 atctggaata ccaccagcgt aatcagcgcc accaacaggt gcatgtagag gaatgacagt
    18961 ccgctcactt cgcaaaccag ccatagtccg gcaaacatga tggtgatatc tgaaaagcgt
    19021 tgcaccatag agattaacga tgcattggtt ttcgctcgct cacgcttttt tagatttgtc
    19081 atcgttgttc ctgttattag cccctacccg cagtggggta agggaagatc cgacattact
    19141 cgttcagcaa cgtcagcaga gttcgcgttc gcgcttccat cagcggcaca tcaccgcgtg
    19201 attccacatt caaccgcacc accggttcgg tgttggagga gcgcaggtta aagcgccagt
    19261 cggcaaaggt catgctgatg ccatcggtgc gatccaccgc cagcgcctca cggctaaaat
    19321 gctgttccac gcggttaatc gcctcaacgg gttgcgccag tttgctgttg atctcaccgc
    19381 ttgccggaaa cgccgccatc cggtcgcgta ccagttcgcc cagcgttttc tctttcaggc
    19441 acaccagttc ggcgaccagc agccacggga tcatgccgct gtcgcagtaa gcgaaatcac
    19501 ggaagtaatg gtgggcgctc atttcgccac cgtagatggc gtcttccttg cgcatacgtt
    19561 ctttaataaa ggcgtgtccg gttttcgaca ttaccggggt gccgcctgcg gcagtcacca
    19621 catcaacggt attccaggag agacgcggat cgtggatgat cttcgcgccg ggattttttt
    19681 cgaggaacgc ttctgccagc aggccgacaa tgtagtagcc ctcaataaac tgcccttttt
    19741 cgtcaaacag gaaacagcgg tcaaaatcgc catcaaaggc aatgcccata tccgcgccgt
    19801 gtttgatgac cgcattgcgg gtatcgtcgc ggcattccgg cagcaatgga ttaggaatac
    19861 cgttggggaa attgccgtcc ggcgtgttgt gtactttgat caattccacg ggtgcgccga
    19921 gggctttaaa gcgggcttca atggcgtcca ccaccggacc cgctgcgccg ttcccggagt
    19981 tgatcaccag cttgagcggc gtgaggtttt tgacgttgat ataaccgaac aggtgatcaa
    20041 cgtaagcgtc acgcagattg atttgctgat agcgaccgcg tttggtttca tcaacgggag
    20101 gaaagtcgtt ggcttctgcc agacgctgga catcgcgcag tccggtatcg ccgctgatcg
    20161 ggcgagcccc ctcgcgcacc agcttcatgc cgttataatc catcggatta tggctggcgg
    20221 taacttcaat gccgccatcc acgccgagat ggaacgtggc gaaatagatc tcttcggtgc
    20281 cggacatacc aatatccagc acatcgacgc ccgcatcctg taaacctttc gccagcgcca
    20341 gttttaagat ttcgctggtg aggcggacat caccgcctaa aacaatggtt ttcggtttga
    20401 gaaattcgcc ataggcacgc ccaatgcgcc aggcaatatc ctcattcagt tcttcgccta
    20461 atttcccgcg aatatcatag gctttaaagc aggttaattt tttcatatcg ttaccctttt
    20521 tcaggcaata gttggccctg accgaaacgg ccaattttgt ttttgtcgtt atttaccgga
    20581 gaattaatcc ggttgattat tcaactgcta cacccgtccg tagcgatccg cgaagcgcac
    20641 cacatcatcc tcttcgagat aagagccgga gcgcacttca attaaatcga gcggaatttt
    20701 ccccgcgttt tccaggcagt gcgtcgcccc cagcggaata taaatggact cgttttcacc
    20761 aagcagtttg atatcaccgt caatggtgac ttttgccgtt cccgctacca ctacccagtg
    20821 ttccgcgcgg tgatggtgca tctgtaccga caagccctcg cccggtttca cggtgatgcg
    20881 tttcacctgg tagcggtcgc ccgcgtcgat agagtcatat ttgccccacg gacgatacac
    20941 ttcgcgatgc acccgatgct catggcgacc atcggctttg atctgctcga ccactttttt
    21001 cacatcctgc accgcgttac ggtcggcaat cagcaccgca tctttggtct gcactaccac
    21061 caaatctttc accccgacgg tggtgaccag gccagattcg gcatacacat agctgttttc
    21121 ggttttgtga ttaatcacat cgccgtggca aacgttgccc tcggcggtgt gggcgctaat
    21181 ttcccataat gaggaccagg agccgacatc gctccagccc gcatccatcg gcaccacaac
    21241 agcatctgcc gtacgttcca tgaccgcgta atccaccgac tcttccgggc aggcgagaaa
    21301 cgcttcttca tccacgcgaa taaaatcgag atccggatcg acggcgctca tcgctttttc
    21361 acaggcatcg agaatatccg ggcgatattt tttcagttct tcgagatagc gtccggcgcg
    21421 gaacaggaac atgccgctgt tccagtaata ttcgccactt gccacatagg cctgagcggt
    21481 ttccagattc ggtttttcga caaactgcgc cacttcaaag gccaccgtat cctgctcacc
    21541 cgcagacact tcaccgcgac gaatatagcc ataaccgatt tcaggtagat ccggcacaat
    21601 gccgaaggtc accagcttgc ccgcttcggc atacggcatg gcattacgca cggcggcacg
    21661 gaacgcgtct tcatcggcaa tcacatgatc cgctgccagc accagcatta acgggtcgct
    21721 ctccgggcta tgacgttttg ccgccagcgc cgccagcgca atggcaggtg cagtgttacg
    21781 ccctgccggt tcgagaataa tgttctcggt gagtttgttc agttgacgca gctgttccgc
    21841 gacaataaag cggtgctgct cattgcaaat caccaccggg ctttcgcact ccacgccttt
    21901 caggcggcag atggtggttt gcagcatggt gagatcgcct ttcaggcata aaaactgctt
    21961 ggggtaaagt acgcgggaaa gcggccataa gcggctaccg gagccacctg ccatcacaac
    22021 tggatagagt ttcgactgcg ccataattat ccccgaatat catttataaa ttgacgtaac
    22081 acgttctctt tatcgagcgt gcgttcggca tattcacgtg ccaccgtgtt gtgtttgggc
    22141 agcaggagcg cctgacggat ccccgccacc agcgcctcga ccgattccgg ttcaacgcaa
    22201 accgcaatgc ccggaaaggt ttcgcaaagc tgtcccagtt ctgtgtgggc ttctgcagta
    22261 atcaccgcgt taccgcctac cgccagaata ttggtcagtt tcgacggcaa tacggcatct
    22321 gccgcgccgc gtttttgcac caccagatgg caatcgccca tcttcagcag tgcgggtaaa
    22381 gcgtcatacg attgcagcgg aaaaaattgc atgttgcgca gaccacgctg ttgcgccatt
    22441 ttttccagcc gcgctttgcc gccgccctgc ccgacaatgg caaaaatcag cggttcatcg
    22501 cgcaggagat cggcagcttc aataacgttt tccagcccct gcttttcacc aatattgccg
    22561 gagtaaagaa tgattttttt gttatccggc aggccaagct ggttacgaag ggcatcaaca
    22621 tcggcatctg caatatgctg aaaacgggca atttccgacc agttggggaa gtagatgacg
    22681 ttttccgccg ccacgccttt ttcgatggct ttattcatca tcgagcgcga aatcgtggag
    22741 acgttatcga cgttatgcag tccgctacgt tcgaacgccg ttgccagctg tgcaactttg
    22801 ccgcctttgc cttttccggc aaggcccagc cccagcatgg cgtccacttc gtaatcctga
    22861 atatgcagca cggtacgcgc accagagagt ttcgccagca ggcgcattcc cggcgtgcaa
    22921 aacagcgttg gcaccacgcc gataatgcga tccggcttcc agcgacgttg cgccatcaga
    22981 ggaaagaaac tgctgacggc aaaactgccg agatgtaaca ggcgtttcag ggtgctcggc
    23041 tgttttggca cgtacagcgg gcagcgccac accgtggcgg ccccctcttc tcgtttgtag
    23101 cgccaggtgg aatagttctc gcccacctgc cactgcgggt agtaaggcgg tgcggtaatg
    23161 acccgcacct catgaccttg tgctaccagc cattccacca tctcgccagt gtatttgccg
    23221 atgccggtta actccggcga gtagttaatg ccgtagacca gtattttcat aatccgggta
    23281 ctccggcacg cttctcagcg agaaaatagg cgcggctgtt agcgtgaaca ttgtcactgg
    23341 cgagcagtgc atccggcgtc agccagcggt aatcgtcatg ctgctcatcc ggcagtaaca
    23401 gctcttcttc cgatactctg aagcgaaaac cgagcaccac atagtgagtg gtgaaatccg
    23461 tgccagagaa gttatcgtca taaaagtgct gccagacacc gtaaaactgg cctgctgtta
    23521 tcggcagacg cagccccagt tccgccatcg tcagccgctc gaatgcggct tccagcgttt
    23581 cgtctttctg cacgcgccct cccggcacaa accagtaacc ctgcgccggg cggttggttc
    23641 ttttgccaag cagaaactcg ccgcgactgt tctcgacaac aaagtcgaga gagacaagcg
    23701 gtgtggagcg cactaccgtg gcaaagtctt cctgacgtaa aaacatcatt acccccgaaa
    23761 gcggtcttga ttctcaagga accactggta agtgctggca agccccgctt ccagtgagat
    23821 ttcgtgatac cagccaagct gatgcaggcg cgtcacatcc agcagtttgc gcggcgtacc
    23881 atccggtttg ctggcatcaa aaaccacccg acctttgtaa cccaccactt tggcgatggt
    23941 ttgcgccagt tcacggatgg tgcagtcaac gcccgtgccg acgttaatgt gcgacagcat
    24001 cggctgggta ttctccagcc agacttcatg cgccagctcc atgacatgaa tgctcgccgc
    24061 cgccatatca tcgacgtgca ggaattcacg catcggtgta ccgctgcccc ataccaccac
    24121 gtccggtgca ttctgtgccg tcgcctcgtg gaagcggcgc agcaatgctg ggatcacatg
    24181 cgaattactc gggtggaagt tgtcgtgcgg cccgtacagg ttggtcggca tgactgaacg
    24241 gtaatctcgt ccgtactggc gattgtaaga ttcgcacagt ttgatcccgg cgattttggc
    24301 aatagcataa ggctcgttag tcggctccag cgtgccctgc aacaactcgc tttctgccat
    24361 cggctgtttt gccagtttcg ggtagataca ggacgatccg agaaacagca gtttgttcac
    24421 gtcgttctga tgcgcggcgt gaatgatgtt gctctcaatc atcatgttct ggtagatgaa
    24481 atccgccgga taggtgttgt tagcaacaat gccgcccact ttcgccgccg ccagatagac
    24541 ctggtcaatg cgttcgctgg caaagaaatc atgcaccgcg cggctgtcca acaggttcag
    24601 ctcgtcgcgg gtgcgtaata ccagttccac atcaccgcgc tgttcgagct gccgcctgat
    24661 ggcagaaccg accatcccgc gatggccagc gataaaaatg cgttgtttac tcatgcttat
    24721 gactccagcg cgatcgccac gtcgtagccg tgagatttca gcagagagtg ttttttcgcc
    24781 gcttcgaggt cattagccac catttcagac accatctctc tgagggtgat ttccggtttc
    24841 cagcccagtt tttcgtgcgc tttggtcggg tcgccgagca gcgtttcaac ttctgccgga
    24901 cggaagtaac gcgggtcaac ggcgataatc acatcacccg gtttaacgcc cggcgcgtca
    24961 tgcccggtga cggaaaccac aatgcccttc tcttcaacac ccgtgccttc aaagcgcagt
    25021 ttgatgccca gctgtgctgc cgccatttcc acgaactgac gtacggagta ctgaacgccg
    25081 gtagcgataa caaaatcttc cggctgttcc tgttgcagca tcatccactg catttttacg
    25141 tagtctttgg cgtggcccca gtcacgcagg gaatccatat tgccgaggta caggcacgac
    25201 tccagcccct gggcgatgtt ggcgattgcg cgggtgattt tgcgggtaac gaaggtttcg
    25261 ccgcggcgcg gggattcatg gttgaagaga attccgttac aggcgtacat gccgtaggat
    25321 tcacggtagt taacggtgat ccagtaggcg tacagtttgg cgaccgcata cggagatcgc
    25381 gggtagaacg gcgtggtctc tttctgcgga atttcctgca ccagaccata cagttcagag
    25441 gtggaagcct gatagaaacg agttttcttt tccagaccga ggaagcggat cgcctccagc
    25501 aggcgcagcg tacccatcgc gtcgacgtca gcggtatatt ctggtgactc aaaagagacc
    25561 gcaacgtggc tcattgcgcc caggttgtac acttcatccg gctgtacttc acgcaaaatg
    25621 cgcgtcaggt tagaggtatc actcaggtcg ccataatgca gatggaattt cgggttgcag
    25681 gtgtgcggat cctgataaat gtgatccacg cgctcggtgt tgaatgacga tgcgcgacgc
    25741 ttaataccat gcacctcgta accttttttc agcagaaact ctgccaggta agaaccgtct
    25801 tgtccggtta caccggtgat gagagcgact tttgacatgt cttattcctc tgtatttttg
    25861 aatttattca gtttcaacgc gttcgcgtat caccactgcg ggattccccc ggcaaaccac
    25921 atttgccgga agcgatttaa aaacactgct tcgtgcaccc acgacggtgc cgtcgccgat
    25981 tgtgacgcct ggggcaacaa agacatcggt tgccagccag catttctcgc caatcacaat
    26041 aggcgtggcg ttaatggtga aatgttgact tgcatggtcg tggctaccgg tgcataaata
    26101 acttttttgc gatatcaccg aatgtgcgcc aatggttatt tcaccgaggg tatataaatt
    26161 gacgtcatcg ccgacccacg cgtaatcacc taaggttaat ttccacggat aggtaatttt
    26221 tactgacgga cgaataacta cgttttttcc tatttttgcg ccgaataaac gtaataaaaa
    26281 tgcccgccag cgatacaata cttgtggcga ccaggcaaat attgttgcct gtactgccca
    26341 ccacaattgc actttaatag cgttgccgcc ccggaaccct ttcggcaccg agaaaccgct
    26401 taaatcttgc atcgttttcc cttatattca gcttttgtta tataaggctt tcgtctttga
    26461 ggtagtacgt tggcgtaaat gccaggataa ttctgcccag aagccaggta catgtaatat
    26521 ttgccgttgg acttttttgg cgtcagcaca caattccata ttattggtgg ttgatacccc
    26581 acccatggaa aattcagaca ccaggccatt gagtttttta aatgcataac cggctttata
    26641 cattttagcc gccagcgcgt aatcggaaga aactttatat tccaggtcat aacgccattt
    26701 tttcaagccg gataccggga aaaatatcgc ctgatgactg gcgggcaggc tgtgataaat
    26761 ataccaacct ggtttggcgc tacgtttaat tttatgcccg tcgccaaaat ccagcagcgc
    26821 atcgccggtg atcatcacgt tatctttttg catttttaac ttacggacaa aatttgcggc
    26881 atcctgatga aaaatatcgc ccgagttgag aaacaacgcg aacttgcctt gtgccatcgc
    26941 aatgcctttg ttcatggcgt cgtagatacc gttatctggc tcgctgacaa agcgtaggtt
    27001 aaagatacca ttgagatttt ccagatactc acgggtgccg tcattggaac cgccatcgac
    27061 aacaatccat tcgaagctga tatcgtccgc ctgcgccaga tgcgccagag aggcgtgtgt
    27121 tttgactatc ccttcgaggt tacgaaacgc gacagtgatt atgctaagca acatgttctt
    27181 attcttacct cgtaatattt aacgcttttc gcaaaataaa cggacagacg attaaaaatg
    27241 catattccgg gctaaatatc gaaccggtaa aaaacagcga taccggagta aaaagatata
    27301 attgcacgcg aaaattgcgg ttatcaccaa aagcgttgat catcattttt atcactttcc
    27361 ccatgtacca cagtgataaa aacaccgcga accaggaaaa ataaataatc agcagataca
    27421 aaccattgtc tatggttttt ccgacatccg caccgttaaa tattccgaat gatgcgacat
    27481 attcataaag tgagccaaat ctgactacac cgtcaatatg ggtcaaagaa taaccgacca
    27541 tcaccagcgg accgacaata cgataatatg atgacgatcc ttccgtacct aaatcgccca
    27601 gacgggtgga aatataagga aacgcgatta ccacaccaac caggaataca gccagagaaa
    27661 tcaatgctaa cggtaacttt ttcttaatcg cctctttatt cagatattga aatgcccact
    27721 ccagcaaata aaacaggata aaggtcataa cccctgaaaa cgatccggat aatattatcc
    27781 ctgcgagaat catagcatct gttttaggcg ttttgatacc aaactgtttg atgctgagcc
    27841 aaattgagat taatgccaga gcgaaaaatg ccggttcgaa ataaagtgct gtcgtgcgct
    27901 tgccgccgaa tttaatgaaa ttcagcacat agctgttgct gtaaatcaga tatttcgaaa
    27961 tcgactccat aatactgctg ccaccggtga ggataatttg tgccatctcc accgccgcca
    28021 gcgccaccac cagcccgacc accagataaa agaaatgtaa tatcttgcga tggttgtgtg
    28081 gcgaaattgt tttaaaacga atactccaca ccatgccaat aatgatcaca atatagacaa
    28141 acagcatagt tgaagtgacg tatttactgg catccagcga ctgaccaaac agatagttaa
    28201 acgccgtgag tcccgcgcca atccctaagg caatcatcaa ttttttaacg ctgatgcgtt
    28261 ctaaaaacag cagtaacaag acaggtaaaa aagtgacgat ggtgatgggg aaactttcgc
    28321 caagctgggc gattttgacg ttaaccagca gataaatcag cggcagcaac aggtagctac
    28381 agattctgat agaagttgac atactcctcc agcatctgtt gtccactgta ggcggcgcgg
    28441 ctgcgttggc tgaactcagc cagcgtggta ccaaatatcg cctgcgcgat ttccggtttg
    28501 cttaactgca ccagttgcag cacctcttct tcgctgacgg ttttaccgcc ggatttttgc
    28561 aacacttccc gcgccgcatc gctatgggtg gcaatcaccg gcacgccaat cgatagcgcc
    28621 tcacacaaaa tcagcgggta gttatcgacg cgagaactga ataccagcgc atccatctga
    28681 ttgagcgcgc tcatcagctt acgtttgtcg gtttcaaagc cgtgattaac cacgttgcca
    28741 gcggtgaacg gcgagaactt accaaaggta tgcagttcga ttttgtcgcc cagcgccatc
    28801 atctcacgca ccagttgctg gttagttttg ccgtcgtaac gcaggtcatg cgccaccacc
    28861 gcgattttcg gcttaccctg ggtttcgcgc accggaggca gatccgccag aatcgcttcg
    28921 gttgccatat caataccgtt attgataatc cggcaacgcc ctggaccgta cagactattg
    28981 aaagcgtcag ccacatgctg gctgggggaa ataaactgac agcccagtgc cagcatctcg
    29041 cggaataact ggcgtttgcc cgccaccagc tggtgtgccc gatcaatctt caccggcgga
    29101 tagttattta aggtcgggca tttctggcag cctgttttcc agccttcgca accgtcggta
    29161 aaggcgcagc gtccggtaac gctccagtgg tcgtgcagcg tccagaccag agtgacgtcc
    29221 ggtttatggt ttttcacctt ttcgcaaaag cgcaccacgc tcttaagatt tagccagtag
    29281 ctgtgcagca catgaaaatg caggaccacc ggacccggtg tacgagtaat ggtgcgatat
    29341 aactcattga aattgccaaa cagatcgcga ttaaacagac gaaacaggac aatattcgcc
    29401 attgcagtca tccgcggcgt atgtttgatg acctgcggat agttttgatg gctgacgctc
    29461 tctttgccgc ctttgccgta accgtagaca aaatgtgacg ctagcccctg ttgcagcgca
    29521 cgctggtgaa gatctaacgc cacacctgct gccccgcctt ccgccagtcg cacattaaat
    29581 tgcaaaatat tcatttaatt accttcactc gcgctttttc tcccaccacc agcgcgttgt
    29641 ccgggacaga gtcgagcacc acgctgcccg cacccacggt gacgttgtta ccaagcgtga
    29701 tatcaccaag aataataacg ttggcaccga gttcgacgcc gttgccaata tgtggacatg
    29761 ccatgttatc ggcaccacga ttgccgatag tgacgccgtg gcgaatggtg aaatcatccc
    29821 ccgccaccac gtttttattg atcactacgg cgtaaccgtg atggatagta aagcggcggc
    29881 caatggttgc ggctgcctgg atttcataac cgaaaaagca ttcggtgata atgcgataca
    29941 gcaccagcag aggggccgcc caaatattgt tgaggacgtt ctttttgcgc cacaccgaac
    30001 aaaaatgagc aacacgatag gcaagaacca tgcagcacgg gcgtaaactc cagctgttgg
    30061 cacgcagatc ttccagcatc tttagcgccc ccgaatacca tcagccagac gtttgccgtt
    30121 acgcaccgac agcagcgtca gcaaagtgcg ccaggtcata cgtttattgc ggatctggta
    30181 gagggtaaac agctgatatt ttttgctggc gcggtcgaat ttgtctttgt gcttgcggta
    30241 aaagtggaag tacccggaga attttttcgg tgacgaggtg atctgcattt caccgtgatt
    30301 gatatgcagg atctgcgtcg cctcttctac tttccacggt tcgccgtact ccaccaccat
    30361 ccgcaggaag atgtcgtaat cctgtgccgc tttcagttcg gtatcgaaca aacactcttt
    30421 gaaacgccac gcccaggtaa aaacctgatt gccaatgata ttgcgtttat agaacaggcg
    30481 gcgtgagtac ggcgatttgg gatacagtgg caaacttgct ggttgggaat agacttcgcc
    30541 ctggcaaacg tagtcgttag cgtacaaaaa ggcgtgtgtg accagttgct gtttatgggc
    30601 gaggaagacg ctcagacggt tgggtgtcca ttcatcatca tcatcgatcc cggtgatata
    30661 ttccccttgc gccagcataa tcgcctggtt acgtaccgcg cacgccccgc tgttaatgtc
    30721 gttgtgaatg taggtaatac gcggatcgtt gagggcggtg acgtactgtt gcagttgttc
    30781 ccaggagttg gagcaatcat ccacgatgat catctcccag ttgctgtagt cctggcgcaa
    30841 gaccgatttt atcgcccgaa tcgccagttg ttggcggttc caggtcggca tatagattga
    30901 gatcagcgga ttgtctttca taggttgttc tcccggctta tgagctggtt tgcttgccgg
    30961 atgcggcgtg aacgccttat ccggcctacg gggcggtgcg aatgcaggcg tcgttatttc
    31021 gcatccgact tatattcgta ttcgtaatag ccataatcct gatacgcgct ggcgcggcgg
    31081 aagatggagt tcagaatcac ccctttcacc ggaataccgt tttgctcaaa gcggctcaga
    31141 ctggtttcca cttctttcaa tgtgttgacc gcataacgcg ccaccattaa tgtggttccg
    31201 acatgacgac caacaattgc cgcatcggtc actgccagaa tcggcggcgt atcaatcaac
    31261 accaggtcat agtttttact cgcccagttc accagttcgg caaagcgttc gctcatcaac
    31321 agttcagaag gatttggcgg cacctgaccg cgcgggatca ggtcaaattt ggcaatagag
    31381 gtcggtttag ctgcggtagt aatatcgccc tgaccaatca gaatttccga caggccattg
    31441 acgttattgg tgcccaacag ctcgtgggtg tagcctttgc gcatatcgca gtcgatcaac
    31501 aacacgcgtt tattggtctg gctgatcacc gccgccaggt tggcgcagac aaaggtttta
    31561 ccgattgacg ggctaacccc ggtcatcatc aacacattgt tctgcgcctg catcatcgcg
    31621 aagtgcagac tggtacgcag actgcggatg gcttcaatcg ccagatcggt tggattcccc
    31681 accgccagta gctggctctg tttatagcgt ttaatccctt tgatggtttt gacgctatcg
    31741 cgcgctttct gccattccga caacgggatg ctggcataga cgctgatacc gtgttcttcc
    31801 agcacctgcg ggctttcgat gccgcgatta aacaacgagc gcagcagcac acccacgata
    31861 gagagcatca ggccaagaat aatcgcccca aggataatca gccctttctt cggttttagc
    31921 acaccaggct gagtgattgc cgggtcaaca atgcgcacat cgccgacggt gctggcttcg
    31981 gtgattttca gctcctgctc tttattcagc agttgcatat agacctgctg accagactcg
    32041 acatcgcggg tcagacggac aatctcctgc tgggttttcg gcatcgccgt tacgcgaccg
    32101 ttaagtttgg ctttttcgtc ttccagcgcc tgacgtttct ccagcagcgt gcggtacgcc
    32161 gggtgaactt tggtgtacag cttggagatt tccgcctctt taaaggtcag ttcgttcaac
    32221 tgggcgtcga tgttcaccat cgaatcgagc accgctttcg cttccagcgg cagatcaaca
    32281 gaatctttat cctgacggaa ggcattcagt ttgttttcgg caacatccaa gcggctacgt
    32341 acttccggta actgttgcgc gaggaaggcg aggcttttcg acgcttccgc cgatttgcgc
    32401 tcaatatttt gttcctgata gttacgggcg atgctgttaa gaatgtcgcg gatctgttca
    32461 cgatcttcac cggtataagt caggctcaaa acgccagcgt ctttgccgtt ctccgttacc
    32521 gtcaggctgt tttgcagttg gttgatcatc cccagcgtgg agtatttggt gacggtaaac
    32581 tcactgcccg ggctggcgtg aatggcttca accatcagcg tgacgccttc ttttttcagc
    32641 atctggcccg cttgcccccg ggcgctaaaa ccgccgtcgc tgctcagggt gtagtttttg
    32701 ttgtccagca cattaagcgt aaacacctga tccgccatct ctttcgggcg gttaaaggtg
    32761 gtcactttca ccgtctcgtt ctgacgtccc atcaggcgat cccagcccgc accgaaaatc
    32821 gggaacgtgt ttttgctcac tgcaatatcg aggtcgagat cgtccaccgt tttaccaagc
    32881 accagacgcg aacgaatcaa ctggatttcg gcgtccgatg caggcggttt gttggctaat
    32941 gccgaaccaa tgtcctgcac taacgaattg ccgctgtttt gctcgatttg taccagtgcg
    33001 tcggcactat aaatcggcgt ggcgaagaag gtgtaaacca cggcacagag ggcgaatacg
    33061 gtggtgatgc caatcaccca ccagcgcgct tcaatgacgg tgccgaccag gcgaccaata
    33121 tcgatttcat cactgcccgt taccggagcg gcatgttgtt ttactttttc tgtcattctt
    33181 atacctgctc tgcgttcaat gcctgcgccc actggcgggc agaccgttca agtaatgtgt
    33241 acaccgctgc aaacgtttcc cggcttttgc gatacggatc ggggatttca cattcgttat
    33301 cccagtgacc aaacagcatc actttgccgc gcatctccgg tgccatctcg cataagcgtt
    33361 cgatatggcg cttttccatg gtcaaaatca ggtcgtagtt gcgacacaga cggcggctga
    33421 tttgacgggc acagtgacct tccagagaca gttgatgttc tgcggcgacg ctgatagcgg
    33481 taggatcagc gcccttaccg accagcgcgc cgagtccagc ggactccact ttcagctccg
    33541 ggtgataacg ttgcagtaag cgttccgccg tcggggaacg gcaaatattg ccgacacaga
    33601 caactaagat gttgttaaac atgacgatta ccagttatga atgtcgctgg ctgtatccgt
    33661 catgtaacgg acaccgctaa tagttggcag caactgattg atcagacggt tccagcggga
    33721 aaccggggcg gtggtgacat acaccacgtc ataaggttgc aggcggaatt ctgtcgccat
    33781 caccagcgac gtggcatcgg acatatccag ctggtagata ctggcaatct tgccgttacg
    33841 cccgccctcg cctttcagcg gacgaatgac aaagatgccg ctggcgttgg aggtggtcat
    33901 gtcgatgcct tcagcattgc ccagggcttc agtcagggtc atgccgctaa agtccatttt
    33961 cagggtgctc tgtttcttca cttcacccat cacaaatact ttcagatcat cattacgtgg
    34021 cacgtagaga atatcgccgg ggtaaagcag gcgattctgg ttgaggtcgc cgttttgcat
    34081 cagcgcctgc aaagaaatgc gctcttcacg accattgtgt gttagcacca cgttgcgcca
    34141 gtcagcggtg tcggtcaggc cacctgcggc gttgatggcg tcgagaatag tcagtggcac
    34201 gttggtgatc gcctgttgac cggatttatt cacctgaccg gagatatagg ccttttgtga
    34261 gcggaaggcg gcgatattaa cgtccacctg cgggtcagcg atgtacgtcg ctaagcgccc
    34321 ggtaatatca ctgcggattt cagcgagcgt tttcccgact acgtggacct tgccgatata
    34381 cgggtaaaac atagtgccgt caggctgtac ccagttgccg gtgtcgctgg agctgcggta
    34441 ctgaccggct ggcgtggtga gttccgggtg atcccagacg gtgacattaa gaacgtcccc
    34501 cggcccgacg cgatactggt aattcgcgat ctcactttcc agcgtcatat tggggcgcgc
    34561 tacattcggg cgtgggcgta attggtcaat caggcgcggg gtcagcggat aaacattcac
    34621 cattttgtcg agatcgaaat cagcgtcctg ctgtttgatg acgtctttgc ccatcgtcga
    34681 catattgctg cccggaagta ctgtgcaacc gcttatcaag gttactgaca ccaataatgg
    34741 catcaatttc attttggatt tcatcattgt ttatttatca ctttggcaga gtaattatcc
    34801 tgtgcactat taatagcaat gtcgccatgc acatttacct tgcagttaat tgaataaaaa
    34861 tttaactggc atcagtccta aaaaaattga tttcatccgc aggctattga cagaataatt
    34921 cagactggtc tttcaggcat ccagacacgc taccgcccct ggctttttag ctaccaatac
    34981 actgatttag tttaattttt cacaccctct cagcatgcag tcgttgatga gaaagggtta
    35041 ttacggaaat taacttccga atataaggtg acattatggt aattgaatat tggctttcca
    35101 ataatgcagg aggaagtgtt acagctaacg gaatagcagg caagataaca attcggtaat
    35161 tggctatttt taagaattat attaagtgtc attcaatatg gtttttagga gtttctttag
    35221 gttgacaata tttaatatag tgtctccaca tgcgatattt cttaaataat attttattat
    35281 taccactttt aattcaggga taatgtgagg ttattaccct caaataatat gagataaata
    35341 gtgctgcaac attgcatttt tgccccgatt tatccatgat cgaattgtga catttgtcat
    35401 acaacgaata ggttttgtac ttactatgga atggattgcc gatccgtcta tctgggccgg
    35461 gttaatcacg ctgattgtga tcgaactggt cctcggcatt gataacctgg tctttattgc
    35521 catcctcgcc gaaaaactac cgccgaagca gcgtgaccgc gcacgggtta ccgggctgct
    35581 gctggcaatg ttaatgcgcc tgttactgct ggcgtcaatc tcctggctgg tcaccctgac
    35641 tcaaccgctg ttcagcttcc gctcgtttac ctttagcgcc cgcgacttaa tcatgctgtt
    35701 tggtggtttc ttcctgttgt tcaaagccac gatggagctg aacgaacggc tggaagggaa
    35761 agacagcaat aatcccacac aacgcaaagg tgcgaagttc tggggcgtgg tgacgcaaat
    35821 tgtggtactg gacgccattt tctcactcga ctcagtgatt accgccgtcg ggatggtcga
    35881 ccatttactg gtcatgatgg ccgccgtggt tatcgctatc agcctgatgt tgatggccag
    35941 caagccgtta acgcaatttg ttaacagtca cccgacgatc gttattctct gcttaagctt
    36001 cctgttgatg attggcttta gcctggtggc agaaggtttc ggcttcgtca ttccgaaagg
    36061 ctacctgtac gctgccattg gtttctcggt gatgatcgag gcgctcaatc agttggctat
    36121 ctttaaccgg cgacgttttc tttccgctaa ccagacgctg cgccagcgga ctaccgaagc
    36181 ggtaatgcgc ctgcttagcg ggcaaaaaga agatgcggaa ctggacgccg aaaccgcgtc
    36241 catgctggtg gatcatggta accagcagat ctttaatccg caggaacggc ggatgattga
    36301 gcgggtactt aatcttaacc agcgtaccgt cagcagcatt atgacgtcgc gccacgatat
    36361 tgagcatatc gatctcaacg cgccggaaga agaaatcctc cagttgctgg agcgaaatca
    36421 gcatacgcgg ctggtggtta ccgacggtga tgacgcagaa gatttgctcg gtgttattca
    36481 cgttatcgac ctgctacaac agtctctgcg cggcgaaccg ctcaacctgc gggtgttgat
    36541 tcgccagccg ctggtgttcc cggaaacctt gccgttgtta cctgccctgg agcagttccg
    36601 taatgcccgc acgcactttg cttttgtggt ggatgagttt ggctcggtgg aagggattgt
    36661 gacattaagt gacgtcactg aaaccattgc cggtaactta ccgaacgaag tggaagagat
    36721 cgacgcccgc catgatattc agaagaatgc ggacggttcc tggacggcga atggtcatat
    36781 gccgctggag gatctggtgc aatatgtgcc gctgccgctg gatgaaaaac gtgaatatca
    36841 caccattgcc gggctgttga tggagtattt gcagcgtatt ccaaaacctg gcgaagaagt
    36901 tcaggtgggg gattatttgc ttaaaacgtt gcaggtagaa agccatcgcg tgcagaaggt
    36961 gcagattata ccgctgcgta aggatggcga gatggagtac gaggtgtgat ggtatcggtc
    37021 attttaccca atagccgaaa ggaataagat gagggaaccg cgccatcggc gatttaccgc
    37081 cgggagcccg ggttgccagg gtggtggaga ttgagccacc ctggcacgtt caccggcttg
    37141 agcgttccat agtagcgagg aacatcaagt gaacggaaca gccttcgatc ttacatattc
    37201 agaatataat gatgccgcca cgaacgcctg atgcgacgct ttacgcgtct tatcaggcct
    37261 acaggactgg tcacctggta acctacatct tctccagcaa cttcttcaca tctttgccat
    37321 tacgggaatc tttattccgc tcggcccagt cattcaggcg acgtttcgct tcgtcctgta
    37381 gatgtttgcg cagtaactga tccacttgca ggctgtaatt gagttgctgc cagttgccat
    37441 aaacccgcag cggtactggc gtttctttca ggaaatcaat cagtttgctt tccccgttcc
    37501 agccacccac gacccgaata tcaaactggg tgtcgcaggt ttgatctgcc agattcaaca
    37561 tgccttcccc tgtcagcgcc agcacaggcg attgaccttg catgtcgttt aacgtcacga
    37621 cgccatcctt caacgtcaaa tcggtggtaa agcggtcaag ccgcgtcacg ttatcaaagt
    37681 tttcagcggc cttcacatca ccgccattac gctctaccgc ttgctgaatc atctgctgga
    37741 agttcatccc ttccatgcgc gtgtcggtca tttcgacatg tgcctgtcct tgccagttgt
    37801 ggcggaatgc gtcggcatct atgtcagcac cggagaaatc accagccagt gacatttttc
    37861 cggtcaacga aatcggatag ttaaacgcct tcagaatggt accaatctca acgttttcca
    37921 gccgtggctg gaagtttatc cgcggattta ttgatgtcgc gtccagcgtg cccggcagtg
    37981 aaacctgtcc accgttaagt ttgccctgca gttgagtaat ttccagcaaa cccgacttgt
    38041 tggtcatttg cgtggcaaca tctgtaaaat tcattccgcg ccagcgcacg ttactggcct
    38101 gcaacaaaat atcagccgta aagccttgca gtccctgata ggccggttca tcaatacgcg
    38161 aagaaatgac cgggcgcggc aacgttgatt ggctctgccc ctgctgcgcg gcaccgtttt
    38221 caccattcgc ggtttcatta agcgggatga ggttgtcaag attcagttgc gggaattgca
    38281 gcctcagctg ccattccggt ttctctgtca gcgtaacctg tgcttgcccg cttagcgtac
    38341 tatcattggc ggtcaaacta atttggttaa atgaaaggcg tttatgtgac tcctgccact
    38401 gggcctggaa actcccctgc ccctgaatac cttgttttgg taaatcggca ccctgcaact
    38461 gccagttaat ttgttcaata gccgccgtta aatcatgcgg ataatcagaa gcatctaccg
    38521 taccgttaag ggatatcgtg agatcgcgct gatcgcgatt aacccgcccg gagaactcaa
    38581 atgaaccacg atgttgggga tcttgttcca tttgcaggcg aatattgcgg attgtcacct
    38641 gctcgtcatc ttcatgctgg aacaccagca cgctgtccgc caccttaaga ctggatatat
    38701 caaacgacca tccgcgatcg tctgacagat ccggcaaggt attgtcgcgc ggtgcaaccg
    38761 gagcgtcttc actgcgcacc gcttccgtct gcggcgtcag ttggatcact gcccctttta
    38821 gcatcacctg cttaacgctc agttgatgac tcagtagtgg taaaagcgcc acgtccagac
    38881 gcatgttgtc ggcgcgaacc agtggctggc ttgcgccctg ggcggtgaga gacattcgcc
    38941 cggagaggat actaagctgc ggccagacgt gccaacgcag tggcccgtcg agctgcaatt
    39001 gataaccgct acgtgcagca acttgcttga ccatatagtc gcggaaatca ttcggattca
    39061 ccagcaacac taacgcagat aacccggcca ccagcacgac caggagtatc atcagcgtcg
    39121 tcagaaatcg tctcatggta tcctcaatgg gcctgaatta gtctttatcg attcggctgg
    39181 ctaccgcgcc ctgctggttg cgatatttcg catcttcacg gcggttgtaa ggtcgcgccg
    39241 ccgggccgga aagcggctca aagctcagcg caccaattaa catgcccgga cgcagcgcca
    39301 gcggcagctt accggagttg tagaactcca gcacaatgca accagaccag cccggatcga
    39361 tgcggtgcgc ggtgacgtgc accatcagcc ccagacgcgc cagtgaggaa cgcccgtcca
    39421 gccagcccac cagatcggct ggcagcgtca ccgactccag cgtcaccgcc agcgccagct
    39481 ctcctgggtg aagatagaac gcctcgccct cgtcgagaac gatctcatcg ctcatcacgc
    39541 ggtcaagcgc ggcgctcact tcatctttgg gaccgctcag atcgataaac gctgccgtgt
    39601 gaccacggaa ggtacgaaat ttattgccca ggcgtacatc caccgtcgcg ccgttaatac
    39661 gctccactgg cggacgtggg ttgatcgaca aacggccttc atcaagccag gcttcaatat
    39721 ctcggtcaca cagacgcatg gcattttctc ctttcgcgca tcactccctt aacgccaatt
    39781 acgtcaaggg cataccaggt tatcactgaa cggtacacaa tttatcaagc ttattcaaag
    39841 aactgactta ttttcgcttt caatatatcg atcgcgatgc ggtttttccc gccgcgcggc
    39901 acgataatgt ccgcatattg tttagaaggc tcaatgaatt gcaggaacat cgggcgcacg
    39961 gttttttgat attgcgccat cactgaatcc attgaacgcc cacgctcgtt aacgtcacgc
    40021 ttgatgcggc gcatcaggca gatatccagc ggggtatcaa cgaaaatgga gaagttaagt
    40081 tcgtcacgca aacgcgcatc cgtcagcaac aaaatgcctt cgagaatgat gaccttcttc
    40141 ggctcaaccg tcaccgtttc tttcatacgc gtatgttcaa catagctgta aaccggcagg
    40201 tcaattgccg agccgcgttt caacgcttgt aaatgctcaa gcagcagact gtgatccatc
    40261 gcgctgggat ggtcgtagtt ggtcttaacg cgttcttcca tcgacagatg gctttgatct
    40321 ttgtaatagc agtcttcggg aattacgccg atgtgttcat caccgacttg ctcacgcaat
    40381 tcacgataaa gggtactggc aataagactc ttgccggaag ccgatgcgcc agcgataccg
    40441 ataatgacgc actgatgaga ctgatcagtc atatatttag cgacctgatt aacctggatg
    40501 ttaggaaggg ggcgacgaag cgccaaacgc ggcaattata gggatttcat ccgtctgata
    40561 ccagtcgaat agcgttgccg cgcgctcaga gttaattgtt gacaaagaat tcccgggggc
    40621 aaattacgtt gatcagtttt atgtaaggta aaaaatgtta tacgcagttg cgcaaattat
    40681 ccgcctttac gtcactttat gagcaattcg catataaaat gtaaaacttt tgtactagca
    40741 taaacacaga aacgaatact ggcgaccagg tcttgcggat aaagcggtaa tgagcaaaca
    40801 atcacagcat gtattaattg ccctgcccca cccgctgctt cacctggtca gtttaggttt
    40861 agtctcgttt atctttaccc ttttctcgct tgagctttcg cagtttggca cccaactcgc
    40921 cccactgtgg ttcccgacgt ccatcatgat ggtggcgttt tatcgccatg ccgggcgcat
    40981 gtggccggga attgcgctga gctgttcgct gggaaatatc gccgcatcca tcctgctttt
    41041 ttccaccagc tcgctgaaca tgacctggac gaccatcaat attgttgaag ccgtggtcgg
    41101 ggcagtgctg ctacgtaaat tgctgccgtg gtataacccc ttgcaaaatc tggctgactg
    41161 gctgcgtctg gcactcggca gcgccattgt tccgcctctg ttggggggtg ttctggttgt
    41221 cctgctgacg cccggagacg atcctctcag ggcatttttg atatgggtac tgtcagaatc
    41281 catcggcgct ctggcactgg tgccgctggg attgttattt aaaccacact atctgctgcg
    41341 ccatcgcaac ccacggttgc tttttgagtc gctgctcacg ttagccatca cactgacgtt
    41401 aagctggctt tcgatgctgt atctgccgtg gccttttact ttcattattg tgctgttgat
    41461 gtggagcgcc gtgcgtctgc cacgaatgga agcctttttg atcttcctta ccacggtgat
    41521 gatggtgtcg ctgatgatgg ccgcggatcc ctccctgctt gctacgccgc gtacgtacct
    41581 gatgagccat atgccgtggc taccgttttt gctgatcctg ctgcccgcca acatcatgac
    41641 catggtgatg tatgcctttc gtgcggaacg caaacacatt tccgaaagcg aaacccactt
    41701 tcggaacgcg atggaatatt ccgctatcgg tatggcgtta gtgggcaccg agggacaatg
    41761 gctgcaaacc aacaaagcgc tctgccagtt tctcgggtac agtcaggaag agctgcgcgg
    41821 actcaccttt cagcaactga cctggccgga ggatctcaat aaagatctcc aacaggttga
    41881 aaagctgata agcggtgaaa taaacaccta ttcaatggaa aaacgctact acaaccgcaa
    41941 tggcgatgtt gtctgggcgt tgcttgccgt ctcactggtg cgccacacgg atggcacgcc
    42001 gctctatttt atcgctcaga ttgaagacat taacgagcta aaacgcaccg aacaggtcaa
    42061 tcagcaactg atggagcgca tcactctggc taacgaagcg ggcgggattg gcacctggga
    42121 gtgggagttg aagccgaata tttttagctg ggataagcgg atgttcgagc tgtatgaaat
    42181 tcctccacat atcaaaccga actggcaggt gtggtacgag tgcgtgctgc cggaagatcg
    42241 ccagcatgcc gaaaaagtga ttcgtgattc gttgcaatca cgctcgccct ttaaactgga
    42301 atttcgcatt accgtaaaag acggtattcg ccatatccgc gccctcgcca accgggtact
    42361 gaataaagaa ggcgaagtcg aacgtctcct cggcatcaat atggatatga ccgaagtgaa
    42421 acagcttaac gaggcattgt ttcaggaaaa agagcgcctg cacattacgc ttgattccat
    42481 cggtgaagcc gtggtctgta ttgatatggc gatgaaaatt acctttatga atccagtggc
    42541 ggagaagatg agcggctgga cgcaggaaga agcgttaggt gttccgctcc tgacggtgtt
    42601 gcatattact tttggcgaca acggaccatt aatggagaac atttacagtg ccgacacctc
    42661 acgttccgcg atcgagcaag atgtggtgtt gcactgtcgg agcggcggca gttacgacgt
    42721 gcattacagt attacgccgt taagtactct ggacggcagc aatattggtt cggttctggt
    42781 gattcaggac gttaccgaat cacgcaaaat gctgcgccag ctgagctaca gcgcctccca
    42841 tgatgcactg acgcatctcg ccaaccgcgc cagttttgag aaacaactgc gtatcctgct
    42901 gcaaacggta aacagtacac atcagcgaca tgccctggtg tttatcgatc ttgatcgctt
    42961 taaagcggtg aatgacagcg ccgggcatgc ggcgggcgac gctttgctgc gcgaactggc
    43021 gtcgttgatg ctgagtatgc tgcgctccag tgacgtgctg gcgcggctcg gcggtgatga
    43081 atttggtctg ctgctgccag actgcaatgt tgaaagcgct cgttttatcc ctacacgtat
    43141 tatcagtgct gtgaatgact atcactttat atgggaaggc cgggtacatc gggtaggtgc
    43201 cagcgccggg attaccttga tcgatgacaa taatcatcag gcggcagaag tgatgtcgca
    43261 ggctgatatc gcctgttatg cctccaaaaa tggtggccgg ggccgggtga cggtttacga
    43321 accgcagcaa gctgccgcac atagcgaacg ggcggcgatg tcgcttgatg aacagtggcg
    43381 gatgattaaa gagaatcagt tgatgatgct cgcccacggt gtcgctttgc cacggatccc
    43441 ggaagcgcgt aatttgtggc tgatttcact taagctctgg agttgcgaag gcgagattat
    43501 tgatgaacaa acatttcgtc gtagcttcag cgatccggcg cttagccatg ctcttgaccg
    43561 ccgggtattc cacgaatttt tccagcaggc cgcaaaagcg gttgccagta aaggcataag
    43621 catcgccctc cccctttccg ttgccggttt gagtagcgcc acgctggtga atgatctgct
    43681 tgagcagctg gaaaacagcc ctctaccacc acggttatta catctgatta ttccggctga
    43741 agcgatttta gagcacgcag aaagcgtgca aaaactgcgg ctggcgggat gtcggatagt
    43801 gctcaaccag gtgggccgcg atctgcaaat cttcaactcg ctgaaagcga atatggcaga
    43861 ttacctgcta cttgatggtg agttatgcgc caacgtgcag ggtaatttga tggatgagat
    43921 gctgattacg attattcagg ggcacgctca gcgactcggg atgaaaacca tcgccgggcc
    43981 agtcgtttta cccttagtga tggatacgct ttctggcatc ggcgtcgatc tgatttatgg
    44041 tgatgtgatt gccgatgccc aaccgctgga tttgctggtg aatagtagtt atttcgcgat
    44101 taactgaggc gtgcttcccc atcgcctgat gcgacgctaa cgcgtcttat catgcctaca
    44161 aatcgctcat tccccaggcc ggataaggcg ctcgcaccgc atccggcgac caacgtcatg
    44221 cttcgtctgg ttgccagcct tccgtatacc agatatgcaa cagcgcataa gaacgccagg
    44281 gcttccagcg ttcggcataa cggcggattt gcgccggtgt cattcccgga aatcgctgtt
    44341 taatcagata atcatccggc aggaaaacat ctttcgcctg ccagccacgc aaagcgaaat
    44401 aattcgccgt ccagcgtccg atatccggaa aagtttgcag cgttttcatc gcttgttcta
    44461 cgtcgcccgg tattgtcatt ggtaagctgc cctccagcgc cgcatttgcc agatgaatca
    44521 gcgcctctgc ccgtttcaat ggcatgccta acgcttttaa tgcctgcggg tcggctgctg
    44581 ccagccgctg aggcgtgggg aagcagatat actccggaaa atcatccagc cgttcgccat
    44641 aaagctgtac cactttggcg gtcaattttg ccgccatcgc cacgctcacc agttggccta
    44701 aaatcgcccg cacgccctgc tcaaaagcat caacactgcc gggtaaacgc aatccgggcc
    44761 gcgccgcgcc taacttgccc aacgcacagt taacaatctg cgggttacat tgcagatcaa
    44821 gcaggcggct cattttcgcc agacactcag cggcaacggg ttctaaacct gcacttaaat
    44881 ttatgtgcag agtatggcgg gctatatccg gaatagcagt caccacgccg cgatattcgc
    44941 ccaccgccag actacgggca taataatcgt cagcgaccgt ttccacacca ctcactgcac
    45001 gggcggcgag aaatcccaac atccacgacc agtcatacgg cggctgccag ttcagggtat
    45061 acatcgcatc tccttattca tccgctttca gcataaacgt tattcagacg ctgcgctttg
    45121 ctttcatatt ccggttgtcg cgacggcaac atttcgctaa agtcacgccc cttcttcacc
    45181 ggcatgggga ttatttcgtg tttattggtt ttgattacgg tacagcaaac tgttcagtgg
    45241 cgatcatgcg tgacggtaaa ccgcacttgc taaaaatgga aaacgacagc acgctgctgc
    45301 cttcaatgct ttgcgcgcca acgcgtgagg cggtaagcga atggctgtac cgccatcatg
    45361 atgttccggc agacgacgat gaaacgcagg cgctgttacg tcgggcgatt cgttataacc
    45421 acgaagaaga tatcgatgtt acggcgaaaa gcgtgcagtt cggtctttcc tcactggcac
    45481 agtacattga tgatccggaa gaagtgtggt ttgtgaaatc accaaaatcg ttcctcggtg
    45541 ccagcggctt aaaaccgcag caggtagcgc tgtttgagga tctggtctgc gcaatgatgt
    45601 tgcacattcg ccagcaggcg caggcacagc tgccagaaac gattactcag gcggtgattg
    45661 gtcgcccgat caactttcag ggtctgggcg gtgatgaagc aaacacccag gcgcaaggga
    45721 ttctggaacg cgcggcgaag cgtgccggat tcagggacgt ggtattccag tacgagccgg
    45781 tagcggctgg gctggattac gaagccacct tacaggaaga aaaacgggta ctggtggtgg
    45841 atatcggcgg tggtacgact gactgttcat tgctgctgat ggggccgcag tggcgttcgc
    45901 gtctcgatcg tgaagccagc ctgctgggtc acagtggtta ccgtattggc ggtaacgatc
    45961 tggatatcgc actagcgttt aaaaacctga tgccactgct gggtatgggg ggcgaaaccg
    46021 aaaaaggcat cgccctgccg attctgccgt ggtggaatgc ggtggccatc aacgacgtac
    46081 ctgcgcagag tgatttctac agtagtgcca acggtcgtct gcttaacgat ctggtacgcg
    46141 atgcccgcga accggaaaaa gtggccctgc tacagaaaat ctggcgtcag cgtttaagct
    46201 atcgcctggt gcgtagcgca gaagagtgca aaattgctct ttcaagcgta gcggaaaccc
    46261 gcgcctcact gccgtttatc agcgatgaac tggctacgct gattagccag caagggctgg
    46321 aaagcgccct cagccagcca ctggcgcgga ttctggaaca ggtgcaactg gccctggata
    46381 acgcccagga aaaaccggat gtcatctacc tgaccggcgg tagcgcccgt tcgccgctga
    46441 ttaaaaaagc gctggcagaa cagttgccgg gcattccgat tgcaggcggc gatgactttg
    46501 gctccgtcac cgccgggctg gcacgctggg cggaagtggt gtttcgttaa ttgaaaaatg
    46561 gctcagcagc gacttaaatc tgcctgcgcc tgagccagtt tttctgccgc ctgacgtaac
    46621 ggttccatca acggcatggt ccgtgctgga gcatgaaggc ggaatcgctg caactctgtc
    46681 gcgccgacag tcaacgccaa ttccagccga tgtcgtttgg cggccatttt cgccattacc
    46741 gcttgtcttt ctgcaggcgt taccgcttcg ttcggcctga acacaaaacg gcgttcacag
    46801 ctcgctttcc agtcgatgac cgcctgggtc agatgatcac caaacccttt aacttgctta
    46861 accccacgac gggtaacatc cgctgctgtt tcaataccaa aggaccgtaa cgccgcttta
    46921 cgcgcagggc caacgccggg aatagaggca acatcaataa aaaatccctc cagaaacttc
    46981 tgcttctgcc gttcccttgc ggtgtcgtga agtgctgcca gagcacgttt ttcttcttcc
    47041 ggtaacccga gaatttcgtc cttcattttt tcgagcatcg tccgtttggc gataaaacct
    47101 tccagcccgc ccaactgttg gctctggctg actaaatggt catagtccat tttcgcgcga
    47161 ttaaatgcct cacggcgttg ctgaacttct gctttgtacg ctttgcttgt cagactgcca
    47221 ataatccaga tagccgccag cacaggaacc aaaataatat aacgcggttc tgcctgaagg
    47281 ccgcaaagca gcagcgataa cgctgacagt gcgatctcaa tcagaatgat gtattcgcgc
    47341 cgtaacaggc ctaaaggaag cggcctgcca gtcggttgga aatgatcggg taatggcagt
    47401 tgcaatgctg gcggcgctac tgacgccatc accatcgccc agactttcgc cagcacaaaa
    47461 tcaccgccgg tggtaatgac ctcttcgccg agatcaataa aatagataac gccttgatta
    47521 tccagcgtac accacgggca gtcggtcaaa tgagcgggat aaacatgcat tgccgaaacg
    47581 gtacatttct ttaactgttg gcgtagagaa tccagtgctg ctacccacgc tttagccgtc
    47641 ggacgcccgg ttgctacgcc actttccgta aacgcctgct gaaacatggc ttcaacatcg
    47701 cccggtaaca tcgacagcgg aatcgatcgt ggcggcggtt ttaaaccacg tcgctggttg
    47761 tctgacgcgt aggcataacg gaaatgggca atatccgtct ccagcgcatt acccgcatca
    47821 gagataagcg gcacaccaga ataaggatgc cgcccaccaa acaagacgtg aaaaatcagc
    47881 aacgcaaggc caaaattatc gtgattcgcg gtacgttcaa aaccgacaaa tgatggcaag
    47941 gtttgtagct ctggcggcgt aaaatgcgac acgccgactt cgcataaatg cagtgtgcca
    48001 ttggcgttaa tctgaaagga gtcactatcg atcaacacca ctttgctgtc gcgacctacc
    48061 ataaagctgt tctggtttac gtcccccacg acgtgcccgt gctcgtgaac cgtagcaaaa
    48121 gatgaagcaa tattgcgcgc aacatagagt agaaaatccc acgcacaatg agggtaactc
    48181 tggcgacgat gtgccgggct atagatcata tgaatcggtt ctttaccaga aacttttggc
    48241 atcataaaac cgataacctt tccgcctcgc ccaccgtgaa gcgttgcctg cggccaggcg
    48301 acataattca acaactgcgc gtcagctgtc gcagccataa aggcaagttt gtcctgtttt
    48361 aaggcgggtg gcggcgtgtg ataaatcttg gcgacgctat cgacaaactc attgatatca
    48421 taaaccgcgc cttcgccacc tttgcccagt tcacggcctg gcgtaacgca ctcaccagta
    48481 gcagtatata aagtgggttt catggtaacc acagcgccag tgccaacgtt ttatcatcat
    48541 cggtacgctc gtttaccgcc gggctggaca aaaactgctt taacaattca ggtaataaat
    48601 cgagttgttc ctgcgttgct gccgccagtc cattgaaaaa cggggtaaag aaaggcacat
    48661 gcggagaatt atccagcata tttaacgcca gtcgctgaat accatccgta aatgctgcaa
    48721 ctttatgcgc acgctcagtg ctggtgaaag tttccagtct ggaaacagca tcttcatcgc
    48781 taatgaaatg cgtcatattg gcatattcac ccaccatcgg cgtgagcggc agttccagac
    48841 cacgaccaaa atccaccact acaccgccgt cgccaatttg cataatcaat gtgccgttag
    48901 ccgatgaaat caatcccaga aacgtgcagg caaaatcgcg aactgctaat gctttggctt
    48961 ctgcctcggc aaaaagtcgt tgacgaatgg tcagtaccat atttgtggcg aggacatcat
    49021 taagccccaa ttcaccgtcc tgtacttttt gcaccataaa cgccatcgct tcattgacgg
    49081 cgagcttcgc gccttctcct ccctgcgaaa cgctacctgc gccatcagca aggaacatca
    49141 ccagtaatgg ctgctggtca tttagccagg caacctgcat ctggcaggca tcctgacaag
    49201 gtaaatcagc gctaatgtgc gacgttccaa cagcggatgc ataaaccaga cgccagctca
    49261 cactgacgtc cagccttttg gcgcttccag cacaacttcc gttcccggcg tggagcggga
    49321 aaccgaacgc agcgaactgg ataaccagct aaacagttca cggaattgta atccctgcag
    49381 tggcaaaggc tgacgaacgc tgatttgtgc cagagtcttc atatccgccc cctgaacacc
    49441 gatggaaaag aaggcaaact tcttatcttc ttccccctga aacactttgt tggcggcagc
    49501 ctgccactca tcggttggag cgccatcggt gatcaggaaa atccacgggc gataatacga
    49561 aataccattt gcacgatact cacgtttccg ctcctctacc atatccaggg ctttggtaat
    49621 ggcagcgccc attggtgtat cgccctgggc aaacaggatg ggcgggaaaa aattagcggc
    49681 gctggtaaag ggttgttcca catgcaccgg gccgaacgtc acaatgccga gttcaactct
    49741 ttttaaggcc agcgaatcgg caagcagctc atcgcgaaag gtaaccaatc cggcgttaag
    49801 ttcattaatg ggtctaccgt tcatagaacc agaaacatcc agcagcaaaa tgcaggggca
    49861 acgtggttcc gggttactgg caaaatcgct ggtggcaaac gtgatttgtt cgctcataag
    49921 aaatcctttc ttagagaatt attgaggtcc ggtatcatac cgactgcaat aatgaaataa
    49981 gagcaaacga agaaactttc agaattagtc ccggcggcgc agaaaatttt gctattcgcc
    50041 tcgcaagaac ggagagccgt cgattgacac taagggcgga gtgacataat ttcaggagtg
    50101 agggttaggg agaggtttcc ccctccccct ggggttctta gtaagcctgg aagctaatca
    50161 ctaagagtat caccagtatg atgacgtgct tcatcatacc cctttcctta ttaaaagccc
    50221 tcttctccgg gagagggttt cccgtttcag cgtcccgctg aaatcttcgg cttacctcct
    50281 ttcgccctgt atgcagtcta tcgctgactt gcggataaaa tagtttccag tgtgattatt
    50341 gcgtaacgac tcgcaaagaa tatttgctgg caggatcgca gactgcaaag cctgcggatt
    50401 gacaatctta tcgtgaaggc atactttcag cagtgagggt tgagcggggt ttcccccgcc
    50461 ctggtagtct tagtaagctg gccagctaat gactaagagc accacgatga tgagtagcct
    50521 catcatgacc ctttccttat ttaaggcccc ttcctcggga ggggctttca cgtttcagca
    50581 tcccgctgaa atcttcggct tacctccttt cgccctgtat gcagtctatc gctgacttgc
    50641 ggataaaata gtttcaagtg tgattattgc gtaacgactc gcaaagaata tttgctggca
    50701 ggatcacaga ctgcaaagcc tgcggattga cattctgaac gtgaaggcat actttcagga
    50761 gtgagggtag agcggggttt cccccgccct ggtagtctta gtatgctggg tagctaatca
    50821 ctaagagcac cacgatgatg agtatcttca tcatgaccct ttccttattt atggcccctt
    50881 cctcgggagg ggctttcccg tttcagcgtc ccgctgaaat cgtcggctta cctcctttcg
    50941 ccatgcaagc agtctatcgc taacgcgtag ataaaatagt ttcctgtgtt attactggat
    51001 gcgtgctcgc aaatgtgccc gccattcaga cgattcccga tagtgtttca taattcctcc
    51061 atttttctcc cttattggct ggctacacta gtatcattcc gcgaaacgtt tcaggaagag
    51121 aaactcttaa cgatgaaagg cagttataaa tcccgttggg taatcgtaat cgtggtggtt
    51181 atcgccgcca tcgccgcatt ctggttctgg caaggccgca atgactccca gagtgcagcc
    51241 ccaggggcga cgaaacaagc gcagcaatcg ccagcgggtg gtcgccgtgg tatgcgttcc
    51301 ggcccattag ccccggttca ggcggcgacc gccgtagaac aggcagttcc acgttacctc
    51361 accgggcttg gcaccattac cgccgctaat actgttacgg tgcgcagccg cgtggatggt
    51421 caactgatgg cgttacattt ccaggaaggc cagcaggtca aagcaggcga tttactggca
    51481 gaaattgacc ccagccagtt caaagttgca ttagcacaag cccagggcca actggcaaaa
    51541 gataaagcca cgcttaccaa cgcccgccgt gatctggcgc gttatcagca actggcaaaa
    51601 accaatctcg tctcccgcca ggagctggat gcccaacagg cgctggtcag tgaaaccgaa
    51661 ggcaccatta aggctgatga agcaagcgtc gccagcgcgc agctgcaact cgactggagc
    51721 cgcatcaccg caccagtcga tggtcgcgtt ggtctcaagc aggttgatgt tggtaaccaa
    51781 atctccagtg gtgataccac cgggatcgtg gtgatcaccc agacgcatcc tatcgatttg
    51841 ctctttaccc tgccggaaag cgatatcgct accgtcgtgc aggcgcaaaa agccgggaaa
    51901 ccgctggtgg tagaagcctg ggatcgcacc aactcgaaga aattaagtga aggcacgctg
    51961 ttaagtctcg ataaccaaat cgatgccact accggtacga ttaaagtgaa agcacgcttt
    52021 aataatcagg atgatgcgct gtttcccaat cagtttgtta acgcgcgcat gttagtcgac
    52081 accgaacaaa acgccgtagt gatcccaaca gccgccctgc aaatgggcaa tgaaggccat
    52141 tttgtctggg tgctgaatag cgaaaacaag gtcagcaaac atctggtgac gccgggcatt
    52201 caggacagtc agaaagtggt gatccgtgca ggtatttctg cgggcgatcg cgtggtgaca
    52261 gacggcattg atcgcctgac cgaaggggcg aaagtggaag tggtggaagc ccagagcgcc
    52321 accactccgg aagagaaagc caccagccgc gaatacgcga aaaaaggagc acgctcctga
    52381 tgcaggtgtt acctccgagc agcacaggcg gcccgtcgcg cctgtttatt atgcgtcctg
    52441 tcgccaccac gctgctgatg gtggcgatct tactcgccgg gattatcggt tatcgcgccc
    52501 tgcccgtttc ggcgctgccg gaagtggact atccgaccat tcaggtggtc acgctctacc
    52561 caggtgcgag cccggatgtc atgacctctg ccgttaccgc gccgctcgaa cgccagttcg
    52621 ggcagatgtc tggcctgaaa cagatgtcgt cgcaaagttc cggcggtgcg tcagttatca
    52681 ccttacagtt ccagctaaca ttaccgctgg atgtcgccga gcaggaagtg caggccgcga
    52741 ttaacgctgc gaccaacttg ttgccgagcg atctgcctaa cccgccggtt tacagcaaag
    52801 tgaacccggc agatccgccg atcatgacgc tcgccgttac ctcaaccgcc atgccgatga
    52861 cgcaagtgga agatatggtg gaaacccgcg tcgcgcagaa aatctcgcag atttccggcg
    52921 tcggcctggt gacgctttcc ggcggccagc gtccggctgt tcgcgtcaaa cttaacgctc
    52981 aggcgattgc cgccctcggc ctgaccagcg aaaccgtgcg caccgccatt accggcgcta
    53041 acgttaactc ggcaaaaggt agcctcgacg gcccttcccg cgcggttacg ctttccgcga
    53101 atgaccaaat gcaatctgcg gaagaatatc gccagttgat tatcgcctac cagaacggcg
    53161 cgccgattcg tctgggcgat gtcgcaaccg tagagcaagg tgcagaaaac agctggctcg
    53221 gcgcatgggc gaacaaagaa caggccattg tgatgaatgt tcagcgccag cccggtgcta
    53281 acattatctc caccgccgac agcatccggc agatgctgcc acagctcacc gagagtttgc
    53341 cgaaatcggt ggaggtgacg gtactttctg accgtaccac caatatccgc gcatccgtcg
    53401 acgatactca gtgtgaattg atgatggcta tcgcgctggt agtaatgatt atctacctgt
    53461 ttttgcgcaa tattccggcg accatcattc ccggcgtcgc agtgccgctg tcgttaatcg
    53521 gcaccttcgc ggttatggtg tttctcgatt tttcaatcaa taacctgacg ctgatggcgt
    53581 taactatcgc caccgggttc gtggtcgatg acgccatcgt ggtgatcgaa aatatttccc
    53641 gctatatcga aaaaggcgaa aaaccgttgg cggcggcgct caaaggcgca ggtgaaatcg
    53701 gctttaccat tatctcgctg accttctcgc tgattgcggt gttgatccca ctgctgttta
    53761 tgggcgatat cgtcgggcga ctgttccgcg aatttgctat taccctggcg gtagcgattt
    53821 taatctcagc cgtggtgtcg ctaaccctga caccgatgat gtgcgcacgg atgctcagcc
    53881 aggagtcgtt gcgtaaacag aaccgcttct cccgtgcctc ggaaaaaatg ttcgacagga
    53941 taatcgccgc ctatggtcgt ggactggcga aagtgctgaa tcatccgtgg ctgaccttaa
    54001 gcgtggcgct cagcacgctg ctgcttagcg ttctattgtg ggtgttcatt ccgaaaggtt
    54061 tcttcccggt acaggataac ggcattattc agggcacttt gcaggcaccg caatccagct
    54121 cctttgccaa tatggcccag cggcaacgcc aggtcgcgga cgtgattttg caggatccgg
    54181 cagtgcaaag tctgacctca tttgttggcg ttgatggcac taacccgtcg ctgaacagtg
    54241 cgcgtttgca gatcaacctc aaaccgctgg atgaacgtga tgatcgggtg caaaaagtca
    54301 tcgcccgtct gcaaacggcg gtggataaag tgccgggcgt cgatctcttc ctgcaaccaa
    54361 cgcaggacct gaccatcgat actcaggtca gccgcaccca gtaccagttt accttgcagg
    54421 ccacgtcact ggatgcgctc agtacctggg tgccacagtt gatggaaaaa ctccagcaac
    54481 tgccacagct ttctgatgtc tccagcgact ggcaggacaa agggctggtg gcgtatgtca
    54541 atgttgatcg tgacagcgcc agccgtctgg ggatcagcat ggcagatgtc gataacgccc
    54601 tgtacaacgc gtttggtcag cggctgattt ccactattta tactcaagcc aaccagtatc
    54661 gcgtggtgct ggaacacaac accgaaaata ccccaggcct cgcggcgctg ggtaccattc
    54721 gcctgaccag cagcgacggt ggcgtggttc cgctaagttc gattgccaaa attgagcagc
    54781 gttttgcacc gctctccatc aaccatctgg atcagttccc ggtaacaacc atctccttta
    54841 acgtgccgga taattattcg ctgggcgatg cggtgcaggc gattatggac actgaaaaga
    54901 cgctgaatct accggtggat atcaccacgc agttccaggg ctgcaccctc gccttccagt
    54961 cggcgctggg cagcactgtc tggctgattg tcgcagcggt ggtggcgatg tatatcgtgc
    55021 tcggcattct gtacgagagc tttattcatc caatcaccat tctctcgacg ttgcccacgg
    55081 caggtgttgg cgcactgctg gcgttaatga ttgccggtag cgaactggat gtgattgcga
    55141 ttatcggcat tattttgctg atcggtatcg tgaagaaaaa cgccatcatg atgatcgact
    55201 tcgcgctggc tgccgagcgc gagcaaggca tgtcgccgcg cgatgcaatc taccaggctt
    55261 gtctgctgcg ttttcgtccg atcctgatga ccaccctggc ggctctgctt ggcgcgctgc
    55321 cgctgatgtt gagtaccggg gtcggcgcgg aactgcgtcg tccgttaggc attggtatgg
    55381 tcggtggtct ggttgtcagc caggtactga cgctgtttac cacgccagtg atttatctgc
    55441 tgttcgaccg cctggcattg tggactaaaa gccgctttgc ctgtcatgaa gaggaggcgt
    55501 aagtgaagtt ttttgccctc ttcatttacc gcccggtggc gacgatttta ctgtcggtcg
    55561 ccattaccct gtgcggcata ctgggcttcc gtatgctgcc ggtcgccccg ctgccgcagg
    55621 tcgattttcc ggtgattatg gtcagcgcct cgctgcccgg tgcgtcgccg gagacaatgg
    55681 cgtcttccgt tgccacgccg ctggagcgtt cacttgggcg cattgtcggg gtcagtgaaa
    55741 tgacctccag cagttcgctc ggcagcacgc gtattatttt gcagtttgat tttgaccggg
    55801 atatcaacgg tgcggcgcgt gatgtgcagg cggcgatcaa cgccgcacaa agtctgctgc
    55861 ccagtgggat gcccagccgc ccgacttatc gcaaagcgaa cccgtcggat gcgccaatta
    55921 tgatcctcac gctaacctcc gatacttatt cgcagggtga attgtacgat ttcgcctcga
    55981 cgcagctggc tccgacgatt tcgcaaatcg acggtgtcgg tgatgtcgat gtcggcggca
    56041 gctcgctgcc cgccgtgcgc gtcgggctga acccgcaggc gctgtttaat cagggcgtgt
    56101 cgctggatga cgtacgcact gccatcagca atgccaacgt gcgtaaaccg cagggggcac
    56161 tggaagatgg cactcaccgc tggcagatcc agaccaatga tgagctaaaa accgccgctg
    56221 aatatcagcc gttgattatt cactacaaca acggcggcgc ggttcgtctg ggcgatgtgg
    56281 cgacggtgac cgactcagtg caggatgtgc gcaacgccgg gatgaccaac gccaaaccgg
    56341 ctattttgct gatgatccgc aagctgccgg aagccaatat tatccagacg gttgacagca
    56401 tccgggcaaa attaccggag ttgcaggaaa ccattccggc ggcgattgat ctgcaaattg
    56461 cccaggatcg ctcccccacc attcgcgcct cgctggaaga agtcgagcaa acgctgatta
    56521 tctcggtggc gctggtgatt ctggtggtgt ttttattcct gcgctcgggt cgcgccacta
    56581 ttattcccgc cgttgcggtg ccggtttcgc tgattggtac gtttgcggcg atgtacctgt
    56641 gcggattcag tctcaataac ctttcgttaa tggcgctcac catcgctact ggtttcgtgg
    56701 tggatgacgc catcgtggtg ctggaaaaca ttgcacgtca tctggaagcg ggaatgaaac
    56761 cgttgcaagc cgcactgcaa ggtactcgcg aagtcggttt tacggtgctg tcgatgagtc
    56821 tgtcactggt ggcggtgttc ctgccgctgc tgttgatggg cggattgccg ggccgactgt
    56881 tacgcgagtt tgccgtgacg ctttctgtcg ccattggtat ttcgttgctg gtttccctga
    56941 cgctaacgcc aatgatgtgt ggctggatgc tgaaagccag caagccgcgc gagcaaaagc
    57001 gactgcgtgg ttttggccgc atgttggtag ccctgcaaca aggctatggc aagtcgctga
    57061 aatgggtgct caatcatacc cgtctggtgg gcgtggtgct gcttggcacc attgcgctga
    57121 atatctggct gtatatctcg atcccgaaaa ccttcttccc ggagcaggac actggcgtgt
    57181 tgatgggcgg gattcaggcg gatcagagta tttcgtttca ggcgatgcgc ggtaagttgc
    57241 aggatttcat gaaaattatc cgtgacgatc cggcagtgga taatgtcacc ggctttacag
    57301 gcggttcgcg agtgaacagc gggatgatgt ttatcaccct caagccacgc gacgaacgca
    57361 gcgaaacggc gcagcaaatt atcgaccgtc tgcgcgcaaa actggcgaaa gaaccggggg
    57421 cgaatctgtt cctgatggcg gtacaggata ttcgcgttgg tgggcgtcag tcgaacgcca
    57481 gctaccagta cacgttgtta tccgacgacc tggcggcact gcgcgaatgg gagccaaaaa
    57541 tccgcaaaaa actggcgacg ttgccggaac tggcggacgt gaactccgat cagcaggata
    57601 acggcgcgga gatgaatctg gtttacgacc gcgacaccat ggcacggctg ggaatcgacg
    57661 tgcaggccgc caacagcctg ttaaataacg ccttcggtca gcggcaaatc tcgaccattt
    57721 atcagccgat gaaccagtat aaagtggtga tggaagtgga tccgcgctat acccaggaca
    57781 tcagcgcgct ggaaaaaatg ttcgtcatta ataacgaagg caaagcgatc ccgctgtcgt
    57841 atttcgctaa atggcaaccg gcgaatgccc cactatcggt gaatcatcag ggattatcgg
    57901 cagcctcgac catctcgttc aacctgccga ccggaaaatc gctctcggac gccagtgcgg
    57961 cgatcgatcg cgcaatgacc cagcttggtg tgccttcgac ggtgcgcggc agttttgccg
    58021 gcacggcgca ggtgttccag gagacgatga actcacaggt gatcctgatt atcgccgcca
    58081 tcgccacggt gtatatcgtg ctgggtatcc tttacgagag ttacgtacat ccgctgacga
    58141 tcctctccac cctgccctcg gcgggcgttg gagcgctgct ggcgctggag ctgttcaatg
    58201 ccccgttcag cctaatcgcc ctgataggga tcatgctatt aatcggcatc gtgaagaaaa
    58261 acgccattat gatggtcgat tttgcgcttg aagcccaacg gcacggtaac ctgacgccgc
    58321 aggaagctat tttccaggcc tgtctgctgc gttttcgccc gattatgatg actaccctgg
    58381 cggcgctgtt tgacgcgctg ccgctggtgt tgtcgggcgg tgacggctcg gagctgcggc
    58441 aacccctggg gatcaccatt gtcggcggac tggtaatgag ccagctcctt acgctgtata
    58501 ccacgccggt ggtgtatctc tttttcgacc gtctgcggct gcgtttttcg cgtaaaccta
    58561 aacaaacggt aaccgagtaa atgacagatc ttcccgacag cacccgttgg caattgtgga
    58621 ttgtggcttt cggcttcttt atgcagtcgc tggacaccac catcgtaaac accgcccttc
    58681 cctcaatggc gcaaagcctc ggggaaagtc cgttgcatat gcacatggtc attgtctctt
    58741 atgtgctgac cgtggcggtg atgctgcccg ccagcggctg gctggcggac aaagtcggcg
    58801 tgcgcaatat tttctttacc gccatcgtgc tgtttactct cggttcactg ttttgcgcgc
    58861 tttccggcac gctgaacgaa ctgttgctgg cacgcgcgtt acagggcgtt ggcggcgcga
    58921 tgatggtgcc ggtcggcaga ttgacggtga tgaaaatcgt accgcgcgag caatatatgg
    58981 cggcgatgac ctttgtcacg ttacccggtc aggtcggtcc gctgctcggt ccggcgctcg
    59041 gcggtctgct ggtggagtac gcgtcgtggc actggatctt tttgatcaac attccggtgg
    59101 ggattatcgg tgcgatcgcc acattgctgt taatgccgaa ctacaccatg cagacgcggc
    59161 gctttgatct ctccggattt ttattgctgg cggttggcat ggcggtatta accctggcgc
    59221 tggacggcag taaaggtaca ggtttatcgc cgctgacgat tgcaggcctg gtcgcagttg
    59281 gcgtggtggc actggtgctt tatctgctgc atgccagaaa taacaaccgt gccctgttca
    59341 gtctgaaact gttccgtact cgtacctttt cgctgggcct ggcggggagc tttgccggac
    59401 gtattggcag tggcatgttg ccctttatga caccggtttt cctgcaaatt ggcctcggtt
    59461 tctcgccttt tcatgccgga ctgatgatga tcccgatggt gctcggcagc atggggatga
    59521 agcgaattgt ggtacaggtg gtgaatcgct ttggctatcg tcgggtactg gtggcaacca
    59581 cgcttggcct gtcgctggtc accctgttgt ttatgactac cgccctgctg ggctggtact
    59641 acgttttgcc gttcgtcctg tttttacaag ggatggtcaa ctcgacgcgt ttctcctcca
    59701 tgaacaccct gacgctgaaa gatctcccgg acaatctggc gagcagcgga aacagcctgc
    59761 tgtcgatgat tatgcaattg tcgatgagta tcggcgtcac tatcgccggg ctgttgctgg
    59821 gactttttgg ttcacagcat gtcagcgtcg acagcggcac cacacaaacc gtctttatgt
    59881 acacctggct tagcatggcg ttgatcatcg cccttccggc gttcatcttt gccagagtgc
    59941 cgaacgatac gcatcaaaat gtagctattt cgcggcgaaa aaggagcgcg caatgaagtt
    60001 ctggcgaccc ggtattaccg gcaaactgtt tctggcgatt ttcgccacct gcattgtctt
    60061 gctgatcagt atgcactggg cggtgcgtat cagttttgag cgtggcttta ttgattacat
    60121 caagcatggt aatgaacagc gattacaact gttaagtgat gcgcttggcg agcagtatgc
    60181 gcagcatggc aactggcgct tcctgcgcaa caatgatcgc tttgtctttc agatcctgcg
    60241 ttcatttgaa cacgataatt cggaagataa acccggcccg ggtatgccac cgcacggctg
    60301 gcgtacccag ttctgggtgg ttgatcaaaa caacaaagtg ctggttggtc cgcgagcgcc
    60361 gattccacct gacggtacac ggcgacccat tctggtcaac ggtgcggaag ttggcgcggt
    60421 gatcgcctcc cccgttgagc ggttaacgcg caatactgat atcaatttcg ataaacaaca
    60481 gcggcaaacc agctggttga ttgtcgccct ggcaacgtta ctcgcggcac ttgccacttt
    60541 tctgctggcg cgcggtttac tggcaccggt aaaacgactt gtcgatggca cgcacaaact
    60601 ggcggcgggc gatttcacta cccgcgtaac gcccaccagt gaagatgaac tgggcaaact
    60661 ggcgcaagac ttcaaccagc ttgccagcac actggagaaa aaccagcaaa tgcggcgcga
    60721 ttttatggcc gatatttctc acgaactgcg tacgccatta gcggtgctgc gcggtgaact
    60781 ggaagccatt caggatggcg tgcgtaaatt cacgccggag acggtggcgt ctttacaggc
    60841 ggaggtcggt acactgacca aactggttga cgatctccat cagttgtcga tgtctgatga
    60901 aggcgctctc gcctatcaaa aagcaccggt agatttgatc ccactgctgg aagtggcggg
    60961 cggcgcattt cgcgaacgat tcgccagtcg tggcctgaaa ctgcaatttt ccctgccaga
    61021 cagtattacc gtatttggcg atcgcgaccg tttaatgcag ttattcaata acttactgga
    61081 aaacagcctg cgctacactg acagcggcgg cagcctgcaa atctctgccg ggcagcgcga
    61141 caaaacggtg cgcctgacct ttgccgacag tgcgccaggt gtcagtgacg atcagctaca
    61201 aaaattgttt gaacgttttt atcgcaccga aggttcccgc aaccgtgcca gcggcggttc
    61261 cgggctgggg ctggcgattt gcctgaacat tgttgaagca cataatggtc gcattattgc
    61321 tgcccattcg ccttttggcg gggtaagcat tacagtagag ttaccgctgg aacgggattt
    61381 acagagagaa gtatgaccga gttaccaatc gacgaaaaca caccgcgtat tttgatcgtg
    61441 gaagatgaac cgaagctggg gcagttgctc attgattatc tgcgtgctgc gagctatgcg
    61501 ccgacgctta tcagccacgg cgatcaggta ctgccgtatg tgcgccagac accaccggat
    61561 ctgatcctgt tagatctgat gctccctggc accgatggcc tgacgctgtg ccgggaaatt
    61621 cgtcgttttt ctgacattcc gatcgtgatg gtgacggcaa aaatcgaaga gatcgatcgc
    61681 ctgctggggc tggagattgg cgcagatgac tacatctgca agccgtacag cccacgggaa
    61741 gtggtagcgc gcgtcaaaac cattttgcgc cgttgcaaac cgcagcgcga gttgcagcca
    61801 caggatgctg aaagcccgtt gattatcgac gaaggtcgtt ttcaggcttc atggcgcggt
    61861 aaaatgcttg acctgacgcc tgcggaattt cgtctgctga aaacgctctc tcatgaacca
    61921 ggaaaagtgt tctcccgcga gcatttgctc aatcatcttt atgacgacta ccgcgtagta
    61981 accgaccgca ccatcgacag ccacattaaa aacctgcgcc gcaagctgga atctctcgac
    62041 gccgaacagt catttatccg cgccgtttac ggcgtcggtt accgctggga agccgacgcc
    62101 tgccgcatcg tttagtttta gcgacattat tttgttagcc ggagatggcg ttcagacccg
    62161 atccggccac attatcccac gcatggtcag caaactgaca ttatctctcc gccctggcag
    62221 gcatcagaaa atcgctcata ctttaatcgg taaacagcac ctttagatgc tgttttcgat
    62281 acacaatttc aatcaaggag tcattatggc tggttggttt gaactcagta agagcagtga
    62341 taatcagttc cggtttgtgc taaaagcggg caatggtgag actatcctca ccagcgagct
    62401 gtatacctca aaagcctctg cggaaaaggg catcgcgtcg gtgcgtagca acagcccgca
    62461 agaagaacgc tatgagaaaa aaacggcaag taacggcaaa ttctatttca atctgaaagc
    62521 cgctaatcat caaattatcg gctccagcca gatgtacgcc accgcgcaat ctcgtgaaac
    62581 cggaattgcc tccgttaaag ccaatggcac aagccagacg gtgaaagaca atacgtaatt
    62641 acgatgccgg gcgtgggttg ttggcgtccg gctttatatc caaataacgc ttagttatta
    62701 ataattaaga gtaaccgccg ccattaaaat agtgggcact gacgagcact cgttgtgctt
    62761 tctttgttta ccatcccata cttatcctcc tgaacatgtt catgtgccaa aatatcttct
    62821 aatactttcg tgacgctatc cggtttatga catacactga tgtaagattt ttacttacag
    62881 gcgggcgtaa aatggccaga acgatgacgg ttgatctcgg cgatgagttg cgtgaattta
    62941 tcgagtcctt aattgaatcc ggcgactatc gcacccaaag cgaagtgatc cgtgagtcac
    63001 tgcgattact tcgagaaaag caagcagagt ctcgcctgca agcgttacgt gacatgctcg
    63061 cagaagggtt gagtagtggt gaagctcagc cgtgggaaaa ggacgcgttc ttacggaagg
    63121 tgaaagcagg gataaggaaa taatgtgcgt attattaaac tcatgccaaa agccaatgag
    63181 gatttagaag gcatctggta ttacagctat caccatttcg gcgaaccaca agccgacaga
    63241 tatgtggaac atctttcaga cgttctccag attctgagta acaataatat aggtacgccc
    63301 agacctgaat taggcgaagg tatttttgtt cttccttttg aacgccacgt catttatttc
    63361 ctgcaatcac caggggaaat tatcgtcatt cgtatcctta accaaaacca ggacgccacc
    63421 agacatttac actggagcta aacccgccga ttgcgctaca atgcccgcca cttaaagtgg
    63481 gggcactccc ctaaccgctt catcaggtga agcggatctg acctgtcatc agaacgagag
    63541 aattatgttt aaaccggaac tcctttcccc ggcgggaacg ctgaaaaata tgcgttacgc
    63601 tttcgcttat ggcgcagatg ctgtttatgc gggccagccg cgttattccc tgcgtgtgcg
    63661 caacaacgaa ttcaaccacg aaaatcttca gctcggcatc aatgaagccc acgcgctggg
    63721 gaaaaagttt tatgtcgtgg tcaacattgc accgcacaac gccaagctga aaacctttat
    63781 ccgtgacctg aaaccggtgg tggaaatggg gccggatgcg ctgattatgt ccgatccagg
    63841 gctgattatg ctggtgcgtg agcacttccc tgaaatgccg atccaccttt cggtgcaggc
    63901 taacgccgtg aactgggcga cggtgaaatt ctggcagcaa atgggcctga cccgcgtgat
    63961 cctctctcgc gagctgtcgc tggaagagat tgaagagatc cgcaatcagg tgccggatat
    64021 ggagatcgag atcttcgttc acggcgcgct gtgcatggcc tactccggtc gctgcctgct
    64081 ctctggctat atcaacaagc gcgacccgaa ccagggcacc tgcaccaacg cctgccgctg
    64141 ggagtacaac gtccaggaag ggaaagaaga tgatgttggc aacatcgtac acaagtacga
    64201 gccgattccg gtgcaaaatg ttgagccgac gctgggtatc ggcgcaccaa ccgacaaagt
    64261 gtttatgatc gaagaggccc agcgtccggg cgagtatatg accgcgtttg aagatgagca
    64321 cggcacttac atcatgaact cgaaagatct gcgcgccatc gcccatgtag aacgcctgac
    64381 caaaatgggc gtgcattcgc tgaaaatcga aggtcgtacc aaatctttct actattgtgc
    64441 acgcaccgca caggtttacc gcaaagctat cgatgacgcc gctgcgggaa aaccgttcga
    64501 taccagcctg ctggaaactc tggaaggtct ggcgcatcgt ggctataccg aaggtttcct
    64561 gcgtcgtcat actcacgacg attatcagaa ctacgaatac ggttattcag tttctgaccg
    64621 ccagcagttt gttggtgagt ttaccggtga gcgcaagggg gacctcgcgg cggtagcggt
    64681 gaaaaataaa ttctccgttg gcgacagcct tgagctgatg acgccgcaag gcaacattaa
    64741 ttttaccctt gagcacatgg aaaacgccaa aggcgaagct atgccgatag caccaggcga
    64801 tggttatact gtgtggctcc cggtcccgca ggatcttgag ctcaattacg cgctgctgat
    64861 gcgtaatttc tccggggaaa ccacgcgtaa tccccacggt aagtgattaa tttcgattat
    64921 ttttcccgga tggaaaattc ttagaaaccg atcacataca gctgcattta ttaaggttat
    64981 catccgtttc gctgaaaaac ataacccata aaatgctagc tgtaccagga accacctcct
    65041 tagcctgtgt aatctccctt acacgggctt attttttacg tacaacaaat tgaaataaaa
    65101 ggatttattt ctggtcacgt ccacacattg accacatcga caaaaaaagc ccctcgactg
    65161 aggggcttcc tgtttctaat tacatccaca taatttgctg ccctgacggc aacgggtgcg
    65221 gccttactgc gtggacttct cccggcttca cgatgtatct ctgtaccgac tcataagtga
    65281 tgaacgtggc gctgcaattc acgttctgac actggtgata acgctctttt gtcgtgtcag
    65341 tgatatagcg acttgtacgc gcatgtgcgg catgctggca taaaggacaa tgaaacatcg
    65401 cgagcacctc ttccggtttt gttgatggtg ccattttagt taatttaccc ttataaaaca
    65461 aacagataaa acaaaacatc actcatcatc ttctgtttcg tactccacat cagaaagcct
    65521 gacctcaagc tctaaggacg tcgtgaagcc gctattattc agaaaatgtg tcaccttagt
    65581 gattgtccag tcctgctcgt ctatgacgcg cttaaagcct gatactttga ccggcgtttc
    65641 cgtgtaaata tctgcccgac cagtagccag actgatggaa aactccgcaa cgccccgttg
    65701 cagcttatcc cacttcgcct gagcggcgcg catggcctgc gctttcgtgg catataccgt
    65761 ggtcagggca aaaacgttgt cagcctcacc tgccatgtat tcaccttcgc gcgcttccgg
    65821 tacttttggc gttttcttct gcgtgaccgg tttcgctttc gggtgctcca gtgcgcgcag
    65881 gtgtttctct ttctttttgc gtttcagttt taccttctgc ttttgtggct tcgggtcttt
    65941 ggtgtgtaac cactttgctg ttacgccggt ataggctcca cggtcagcaa tcgcaaaatg
    66001 atggcggtcg ccgtcgctgc gggttatggt gacctgcggg atttttttac cactggccgt
    66061 caccccctgc cccgctttga gaaacaacag ttttcccatt tttaccgaga cctcaccgcc
    66121 gttgcgttct gcaagacggg tcaggaattt cgcatcagac tcctgcgact ggtcgatgtg
    66181 cgggatttta attccggcca gtgacggagc gacactggct tccagcctgt tacgggaggc
    66241 tatcgcctca acaatcgcac cgagcgtggt gtcatgccag gagccttcac ggcgggaatt
    66301 gagcgtcccg cggaaatctg cactccgggc gcggatggtg accacatccg gcgcgccccg
    66361 gtgttcaacc tcatcaacgg tgaatttccc tttgcatacc agggcaaaac ctttccagcc
    66421 gatatacacc gtcaggacag cgccacgaac cggcagcccg acctgcccgt cggcatcgtt
    66481 cagttcaata tcaagctggt cagcctcaaa gccccggtta tccgtcaggg tcatgctcat
    66541 cagacggtcg ctgatattgc cggtaatatc cctgctgtcg agcatcagca tgtaatccgg
    66601 cgtcagcgta ctacctgcat caaatgtcag cgcgtccagc attatcccgc ccccgtcata
    66661 cccgtgaatt tagtcgccat actgccagcc ttaccgatga gcgattccgc ctgtttaccg
    66721 atatcgccat aaagcgcggc cagtgattca tccacgcggg tgagcgacaa cgtaaaatca
    66781 attttccggg gtgtgccgtc tgcaaagaaa atactccctg tttcactcac cctgctgatg
    66841 acatacatgc cgtaaatcat gccggtgcca tccagcaacg gccacgcccg gccttcctct
    66901 gccatcagcc tgagcgtggt catcgtcagc ttcccgccgg tcagttcggg ataaagcacg
    66961 ccggcaagcg tcatgttttc ctcacccaca ccgagaaact gaaaggcatc ccgtttaccg
    67021 atacggggat ttgacggcca gcgataatct gattcgcgct gcatggtctg gtgtggcagc
    67081 gtctggcgca taaaaacaaa catacctaac gcgagcatca tttttcgtca cctccttaac
    67141 cgtcatgcat catgctggca cgggcgcgcg cacgtttatc ccgctcgtat ttttcgagcg
    67201 catcctgtaa ctggcggtca ggctgtgtcc ccggcgcagt accacccgtc aggctgatgt
    67261 gatattcgtt tttactctgg tccacataag agcggccagc cggtgccgta accggctgat
    67321 aagcctgata gcctgcataa gagctggtcg ccggaatata accaccggtg ccatacgtgg
    67381 cggcattagt ccttgcggcg gtctggtcaa gtgtgtctga ctctttgtta ataacaccga
    67441 gtttttccag tacccagtca ataccactgc gcagtttgtt gaacgcatta agcggcagca
    67501 tcaacgcgtc agccagtgcc tgcccgaaca tgacgcccgt gtcacggcaa cggttcaggg
    67561 tgtcctgtgt ggctttaacc ggggcaatca ggtttttaaa ccactgccac gcggcctgta
    67621 acttttcgcc cagccagtca aacaccggct taagtggcgt gaacagttcc cccaccggcg
    67681 caaatgccgc tttcagccct tccaccacac cgccaaagaa tgcgctgaca ggctcccagt
    67741 atttacggat aagcaacgcc ccggcgacaa tggcggccac cacggccaca accggccagc
    67801 taatcgctcc aatggcggtc ataacagcac tgccaaccgt cgtgaagatt gcccccattg
    67861 cgcctgctgc cgcgatgatg gcattgatgc cggtgataac cggccaggct acgaggccaa
    67921 tggcaccgat gacaccaatc attgccagtg caccaccgac aatgatgccg atggttgacg
    67981 ccagtgattt gtttttctgg atccagccgt cgagttttaa cacatacttt gtggccgtct
    68041 gcgtgagctt acgcagtgcg ccttcctgct ggtcaaacag gtcagtcccc accgcctcat
    68101 aagcggactg aaactcctta aagtcaccgc cgaggttgtc ctgcatgata tttaccagct
    68161 ctgcggtctt tccgtctgag gctttaaacg cagcggtcag tttgtccagc tttccggttg
    68221 aggcggcagt catcagcacg gcggcggctg aactggcctc ctccccgaaa atggttttca
    68281 tgtattcagc ctgctgggca gtaccgagcc ggtttttctc aaaactggcc tgcatttctt
    68341 tcagaatggt aaatactggt cgggtgtttc ccttactgtc tgaggttttc acaccaagct
    68401 ctttgagtgc atcccatgct tttcccgtcg gtgcctgcag gcggcttaac acggcacggc
    68461 ttcccgttcc cgccattgag cctgtgattt ttgcatcatg cagcgccccg accattgcgg
    68521 cggtttcttc aatgctgaca ccggcatttt ttgccacagg tgcggcatag gtcagcgcat
    68581 cgctcatgcc gtcaaaatcg gcggcggttt tgttcatcgt catggagaga acatccccga
    68641 tatgagcgac cttatcgttt gaaagctgaa aggcggattt catccccatc agcagggcgg
    68701 cgttttcttc catcgtgcga cggttcgcca gcgccatatt cagcgtgacc ggcgttgccg
    68761 cctgaatggc atcaacatcc ccaccggctt tcgcaataat aatctgcgca ccagctgcat
    68821 catctgccga ggctgcggta ttgtcgccga gctgacgcgc ctgcttgcgt agtgcagcca
    68881 tttcggcgga gtcttttacc actccgagca cggcctgcaa ttctgagttt ttctgcgcaa
    68941 actcataacc gggcatcagc agcttaactc cggccatcgt tcccgccgcc gcaatcccca
    69001 caccggcagc gcccaccgag gccatatttc cggccagttc ctttccggcc tgataacgct
    69061 gttttactgc gttaagtttt gcctgttgtg cactgacacg cgccagcgcg tcgcgctgac
    69121 ggttaagctg tgcggtggtt tcactgatac ggtttttcag tccctgctca tcatgtgcaa
    69181 gattgcgggt attaattccc acagcggcca gttcccgctg ctggcgttta acggaatctg
    69241 tcaggcggtt atatttcgcc tgtaagtcct ccgccgcacg ctttgcggat tccagcactt
    69301 tcgcctgagc acgggtcgga cgttcggtgt ttttaaactg tgtggcaagg gcttcggcct
    69361 cctgccgtgc cttttcaagt gcatgaccag tcacggcgag ctgtgcactg gtcttgcgga
    69421 atccctcaat acgggatgcc tgaccgttca gctcgcgcag tgatttttgt gtttcccgga
    69481 tatcccccga cagcgatttg ctcgctgtgc ggatggattt aaacgggcgg gatgcctggt
    69541 caacagccct gagcaatacc tgtaatttta cattgttact cattcgtgtt tccgcttcgc
    69601 cggagcgcct tttcgcgcca tgtgatgagt tcggtcaggc tcatgggata cagttctgat
    69661 ggcggccagt gaaatatcac tgccacatcc gccatcaggt catcgaccga gagatttttc
    69721 ggaaacgtca ctgcaccgag ttcggcgaca aaaaaccgac caccttaccg gccagcgcca
    69781 caaggtcagg cagttccagc gcggcgactt cctgctcggt cagcatcggt gccgtcatgc
    69841 gcggcagcac cttaatcagt gcatcgactt cagagttcgc gaccgcagcc agactgacac
    69901 cgcgcagcgt cccggcactg ggtttcatca gcgtgacctg ttcgatgacc tgctcaccac
    69961 gcttgaccgg attgtccagg gtaatcacat tttctttgtt catggttttc tcacttctga
    70021 atcgggggtt aaccggtcag cctggctgac cggatgaaaa tcacaggccg atattgcggc
    70081 ggtgttgctc cagccggtcg acgccgttca ccttctcaat catgttgatg gtgtcgattt
    70141 cgaccagctc cttaccgtcc atcgtcagcc ggaaataggt gcagaccacg gagattttcg
    70201 actcggtgtc ttctccctgt ttaccctcgc cggtgtcgat ttctttctga cgtccacgca
    70261 tgaccacctc gacggccacc gtttcgccgg tatcgtcgcg ctggtaagag cctgcaaaac
    70321 gaatcggcac ggcatccaca ccggttgcgg cgtaaagctc ccagataacc gaatccggga
    70381 agcccccgag cgaccactcc attgacagcg catcgtcatc aaggccgagg tctaccggtg
    70441 cgctgccgtt catccccgca cctcgatagt tttcgagctt acgggtcagt tttggcagcg
    70501 tgacggactt tgcaacgccc tgatagctgt agccgttcag aaagacgttc attaacttga
    70561 gtttgcgcgg cattgccatc ggtcaggctc cttaattgct gttaaccgag gtgaccagat
    70621 ttgccaggta tttatcggtg atacgctggc gcagggtcag gttttcaaga ggaggcaccg
    70681 gggtatagtc gtagtcgata tacagttttc cggccttgag ggtttccgca tcgttggatt
    70741 cttcgctaaa ccagcaggtc gcatccacga tatagccgtt tgttttcagc tcacggaatt
    70801 tggcattgat gccgtcaacg atgtcacgaa tcagcgttgc ggtgatgggc ttgtccaccg
    70861 cccacatgtg cgcctcagcc atcgtgtcgg ccagtacctg tgcggtgcgg gtgtagtttt
    70921 caaagaggaa cagcgggtca tcagagcagg tacggttacc ccagaagcgg aaaccgtcac
    70981 ggcgaatcag tgttgtgacg cctgactcgt taagcaggtc agcatcggtg ccggactcct
    71041 gcaaatccca gaatacagat gcgctgatgc cggtaacacc gttcaccccg acgttggaca
    71101 gcgttttatg ccagccctgc tcctggtcga ttttggcacg cagacccagc gcacgggcgg
    71161 tagcatacgc ggtggcggtg gtactggtga ccgtatccca tgcgaggaaa tccggccaga
    71221 tgaccatcag ctcacgctgg ctgaaattct ggcggtaagc tttcacctcg gaaatggttt
    71281 tacagcccca tgcgctgata tacccgaaag cgcgcaactt ctgacagact gatgccagtg
    71341 caacagccac ctctttggta tccagtcccg gtacgccgag aatacgcggt ttaacaccgg
    71401 ttaccgactc cgccgccagc agggctttca gtccggtgta ctgaccgttt tcgtcggtgg
    71461 tgccgatgat attggaaacg gtctgcgcga gtttcgtttc ttcgtcgtcg ccggtgccgt
    71521 cttccacgcg cacaacaacg gtgaccggtt ttgactggtc agcgatggcc tgcaacgatg
    71581 ccgccagcgt gcctttttta ccggcctttg caattgcgct ctgcacattg gtaatcagca
    71641 ccggtttatt gagggggaag gtttccgcat ccgcatcgct ggccgtgcag accatgccga
    71701 caatggcggt ggatacggtt gaaatgacgc gggtgccgtc gttaatctcc agcacctgca
    71761 cgccgtgatg atagtcactc atccgtttaa ctccgtggtt aatgggtgca actattttct
    71821 gttgtacaga gcatgagacg ctatttgatc tgtctggtca gtggatgaaa caacagatac
    71881 agaaaaggcg ggcaattcgc ccgcctgtcc tagtttgtac tcactcattt tccgactgac
    71941 aatttacata gccaaaacgc tatcaaatct gacagtctgc tttgagcgaa aagcagactg
    72001 tcacgcgttg aagttaattg tattacttag ataaacacta tcattttcct gacgttaagt
    72061 tgtatctttg ataggattaa aaaacgtata gatagcttat gctactgagg gaataaaaat
    72121 gacgaaaatt agtgaacgat ggaagcacaa tggcattact gaaggttatt gcaatatttg
    72181 tgggaaatat ggcttgctca caaaagatca tgttcctcca aagtgcgcca taaccttatg
    72241 gccctgtttt gcagaaaaca gttagcgaat tttttggtat tcaggaacca gttaaaccat
    72301 taaatgctaa aaatggctct tatttcagaa ccatttgcag ccactgtaac aataaggtat
    72361 taggtgggct cgatgttgca attgaaaatg taacaaagtc ctttaaagaa cagttaagtc
    72421 gatatatgaa tggtatgaat gtatatccat tcattagaat accttttgat agcatatctt
    72481 tcactaaggc tatgattggg cacgtgctat cagcaacttc agttgaagat tgtaaaaaag
    72541 aacccgtaga tagccccttc tatacacctt taaaggatta tgttttgggt aaaaattcaa
    72601 gttttgagga aactcatgat atttactact ggttttaccc acacagaatg cacatatccg
    72661 ctcaaagtgt agcatttatg aacgaaggac atgtggcatt tatttgtgct ttacattttt
    72721 ttcctatcgg ttttattatc acaatgaaaa atgaaggaac ataccctgcc cactctacaa
    72781 aattagaact tgaagataaa ttccttacat ttaatatgac ctctataaat tatgagtata
    72841 cgacatttcc atttgtaaat cttaagggaa accaaatgta tgcgataagc aacggtcata
    72901 cttgtgtgag ttatccaata attaagtgac ggctaaatca tacaatctac gcatgttcac
    72961 tttctacata taccatctat aatgtccgct gttggcacaa agcagacgcc cactctcacg
    73021 cgaatgcttt gcccttgact tgccaacaac cgtatcgctt gctccgcaac tatggttttt
    73081 tattagaatc ttcgccacta aataaattat aataaattga ttttattaga tatctgtcag
    73141 aatctatatg gtcagcacga gtagcatgct ctaatgtttc aaatgctagg gtttgtgcgg
    73201 cttcagcaaa aattccaggc caacccttac tcagcatcga cagtccttta aggaccctta
    73261 tctgaatttc cctcatactg gcaccatcgc gcgcaacagg tgagaaaaag tcttcaagta
    73321 gatcgttatt ctgaagtggt gcaacatgta cagaaggata tttcacttct atttcatcag
    73381 atttattctg cgcgtaagcg gaaagtatac gtacacctct gccaatgaca tcaatggcgg
    73441 ttccaggatc gttcactgcg ggggaaaggg ctcggcaggc tatttcggcc atgacgctaa
    73501 gacaaaatcg ggggtcctga gcaaatgaac gtacatccga gacaataatc gtctcaagta
    73561 aatcggtgct gattgatgac tcctggccct gactcaggta caaaactggc gtggacggat
    73621 gtatgaaact gcccggctgc gccacgaggt atacatgacg gggatcattg gtcagcagct
    73681 tgctgagttt caccatatca acatattcaa catagccaat ctttttcgga taaactgcaa
    73741 ccgttccttt cggctgttca ttgttctcaa gccatggata tccgccgaga cagggatttc
    73801 ttgctctcgc aataaatgtt tcgatggccg cctgttctac ttttgccgtt gtctcaccaa
    73861 ccctccccag agaggtcaaa tgctgtatcc agcgaagcaa tgtgatgagg attaaggcaa
    73921 tgacaaccag tgttacaatg aataaaatga ctctccccct ttctccataa gctcccatat
    73981 tgagggcaat aatccctacc agactgaaga gaaaagaacc gatgaaggtg gccagtacat
    74041 tttgtgtggt gacgtcttca acaactaaac gagtagctct gggagtcaca ttagtagtgg
    74101 ctgaaccgta ggctgtgacc atgatgctca gcgaaaatgt ggtcactgcc agcatactcg
    74161 atgccagtat gttcagaatg ttatcgactg cttccgcacc aaccttcacg gaaaccgact
    74221 caggtatcat tgatttaaaa agaattgata aaagggccgt tattattgcg acaattgcga
    74281 ataacgttgc cctgaaccat agttttttaa atgtctgctt cagcatccat ttccagcgtg
    74341 aaatcattct gcattccctc atattgcagc cgggataaat aaatgccgcc tctgtggcgg
    74401 catgttgctg ttaacgaacc agatgcagga agtgcaggtg tttttcgtac tggtccagta
    74461 tgtcattaat cagctgttcc tgattccagc ccattacatc ataattttgg ccgccctctt
    74521 tgagatagac ttcagcgcga taatatcgat gttgttcact ctgctgctca tcattatcca
    74581 gcgcagcgag cgcgaaggtc ggtgagttat acccgcgaag cctcacttca tatatataat
    74641 tcagctcgtt gcccaaatcg acttcaaggc gaatacgatc ctcggcggcg tcactgatgt
    74701 ggcttatcgt tccctgcttg ttaagttcct cctgaaccag cgtcatggcg ggttggataa
    74761 tgtcgtccat aaaacgtttc acaagagagc gcttcggcaa atacgcgata ttgcgtaacc
    74821 ttctctgcca gggaattggg ttacgtgcag ccgtaggagc aatagtcgcc atgctaaggc
    74881 tttcacgctt ggtcaaatcc cgacgcaggg cttttaacag tccgtatatg gatattaata
    74941 agataactga gaagggcaat gcactcgcta tcgttacggt ttgcaacgca ctcagccccc
    75001 ctgcgatcag cagggcaata gcaacaacgc ccatgagcaa tgcccagaaa attcgctgcc
    75061 agacgggcgt gtttgccacc ccacctgatg ccagagtatc cacaaccatt gcccccgaat
    75121 cagcagacgt tacaaagaag acgatgacca tcgccattgc aatgaatgac agcacggaag
    75181 agaacgggaa atgctccagg aaattaaaca gggcaagcgc aacatcctgc tgaacggtat
    75241 tggcgaggtc agtggcgccc tggttcatga tgagatagat ggcgctgttt ccaaacaccg
    75301 tcatccacat gagcgtaaag ccggcgggaa caaacaacac gccagtcacg aactcacgaa
    75361 ttgtcctgcc gcgggaaacg cgtgcaatga acatacctac aaacggcgac catgaaagcc
    75421 accatcccca gtataataat gtccagcccc ccagccagtt gctcgacttg ggttcatacg
    75481 cgtaaaggtt gaacgtttta ctcaccagtt ccgacagata accacccgta ttttccacaa
    75541 atgacttcag cagaagcaca gtgggaccca ggcacaagac cagcgccagg agcaacaccg
    75601 ccaggcccag attaagctca gacaggatgc gtattccctt gtccaggccg gacaccaccg
    75661 aaatcgtcgc taaccccgtg atgaccacga tcaaaatgac ctgtaccgtt tcattgatgg
    75721 gcacgccgaa aagatggttc aaaccggcat tcacctgcaa tacaccgtaa cccagcgatg
    75781 ttgcaacgcc aaagacagtg cctatcacgg cgaagatatc aaccgcgtgg cctataggcc
    75841 cgtaaatgcg atcgccgata atgggataga gcgcagaacg cagcgttaaa ggcagaccgt
    75901 gacggtaact gaaaaaggcc agaatcagcg ccacgatggc ataaattgcc catgcgtgca
    75961 gaccccagtg gaagaacgtc aggcgcatgg cttccttcgc tgccgcaacg gtctctggag
    76021 tgccgacagg tggcgaaaga taatgcatca caggttcggc aacgccaaag aacatcaggc
    76081 cgatccccat ccctgccgaa aaaagcatcg cgaaccagga gtggtagctg aaatcaggct
    76141 gcgcatggtc tgggcccagc tttatatcac cgtaacgtga gagtccaagg aacgtgacgc
    76201 tcagtaaaat cagggccaca gcaagtatgt agaaccagct ggcattcgtg aagatttgtt
    76261 gctgaagtag tttaaaattt ttgtcggcga catccgggaa tacggcggca aaggcgacaa
    76321 gaaggaaaat tagcaaagca gatgtaaaga ataccgcttt gttaacctgg cttgtagact
    76381 tctttggggt tgtatcattt tcactcataa tcatttattc cattaattaa atccgcactg
    76441 gatagaaggt actacctctc acagagtagc aaagttcaac tggctatgcg ggattaatcg
    76501 gaatgcatgg tggaatgagt gccgatacaa atcatcctat attctaagga gttttaagtt
    76561 actcagcctg ccaattactg gggcatttaa tttgtatgat ctgtatcaaa gctgggatat
    76621 aagttaagtg aagtatatta ggcacgaatt accagcgtct gctcttggca cagagcggac
    76681 tgtcagatta gactttactc tgtgctatag gtatgtcagc tcatacaact tattgcggca
    76741 tttccggcca ttcaggattt gcaggatcca cacgactgac cagaacgctg tagcgttccc
    76801 atgcttccag tcggctgcgc tcctcatctg ttgccatatt cagcctgaca gcgcgctcca
    76861 gcggcaaaat cacggattca gcttcggaaa gtaaagttgc cttttgtgat tctgccagtt
    76921 gctgctgttc gtctgccgta taaatccgct taatcacggc accatcctta aacatccatt
    76981 tacctgagtc atcagcacgt cggttggcgg taatatcagg aacctcgaca acgctaaaac
    77041 cttcagggtt aagcgttgaa gcatctctgg tgatgccgac aattatatta ttctcgtcgt
    77101 aaacaatctt tatcgtgtct tcctgaaaat tacttacttc ctcataccag ttttttccgt
    77161 cttcagacca taaccagata acatcaaaat tttttgtcag ttgatattgg gcaacagttt
    77221 tgggattacc cgcagtaata ttttttaaat gctgcataaa ttacacctgt gcgacgttat
    77281 accatgtgcc attaatgtat ttttgtattg gtctgaatac tgccggatca tcgccatcaa
    77341 cttcgccgac aatgccaagc cctgtaatta catggcctga tttctcatac atcacgcctt
    77401 tttgcatggt ctgaacaaca cgcgtaccca ggcgaacatc tttcacatag cgggaatcaa
    77461 aatttccgta atctgatggg ttaacacgtc cagtaacact caggccatgc cccattgaca
    77521 ctccgccatt ggcgttattg atagtcagcg gtcttaaacc gttccatgtt ccaaatttat
    77581 cgccagaggc cgtcagcatt aaatatgtgc tgccgccatc attcctgata aagaatccat
    77641 aattgccata agcaatgcgc agaccattag cactgagcga tgtaatttca cctcttgaac
    77701 gaagaccata agcagagctg agtgataatt cttcctgagc atcagtatta cctgtcgccc
    77761 agcgaattac cccgccctgt actgtttcat gccagatagt gtctccttct ccaccacgaa
    77821 actttctgag atattttttg ccgcctctgg tgccggaaca taaggccgta gacatatagg
    77881 cattctggct tccactatcc tgattaatag ttccagacat agaatcgccg taacggttcc
    77941 agtcacgccg ccagccagga gcatagttgt ccccgtggtt aatataagta aattgcgcgc
    78001 ttgtagcgcc cccaccgctt gatgttgttg gtgtggtaat acgaatagtc attgcagact
    78061 ttatgcccat tacctcaata acagcgccag caagatgaat attgccacag ccagtatccg
    78121 taatgatttt gttatttgca tatgaccagg agcctttgca catccagtac ggatgattaa
    78181 atgcaccacg ggaatccagc cattcaataa actgagcggt tgtccagttt ccggcttcag
    78241 tgctcaaagc gccgctataa gcacgacagg caccgatatt tttcgtgaag gtatcctttc
    78301 ccggaatatc cgcaccgttc tgatctttct gaagacgttt ttcagcattg tcataggcag
    78361 acttcaccgc ctttggcgtt gcagcctgcg tttcagaatc actgttggtg gcgctactga
    78421 gctggacaag accttttcgc gccgtggtgg catcctgtgc agtgtatttc ccgttagcaa
    78481 ggtcatatgc tgtcttaacc gcctttggcg ttgccgcaag cgtttcagaa tcgctgttgg
    78541 tggcgctact gagctgaaca aggccttttc gcgctgttgt ggcatcctgt gcagtgtatt
    78601 tcccgttagc aaggtcatat gctgccttta ccgctttcgg cgttgcggcg agcgtttcag
    78661 acgtgctgtt agtcgcacta ctgagctgaa caaggccttt tcgcgcggtg gtagcgtcct
    78721 gtgcggtata tttcccgtta gcaaggtcat atgcggcctt aaccgctttc ggagttgcag
    78781 ccagtgtttc agacgtgctg ttggtcgcac tgcttaactg agtaaaacct tttgcggtca
    78841 gcgaggcgtc agggtgacgt cgtgactgtt catgttctgc aattttgtca tcaacgtaat
    78901 cctgcgttgc catcaccgtt gtggtgtcaa tggtcagctc cactgaggcc acactgctga
    78961 cgatgatgac catgcggcag gtctgcgaac gccctgagcc ttcggcaagg gctggcttat
    79021 aactttcggc catgttcgcc acggcaatta gcgttcccgc atcatcgtac aggccaagtt
    79081 cacgcatcca gaaaccgccc acctccggcg gaataaccag ctctgcgata atataattac
    79141 tgtttcgttt gtcctggctg attttgttca gcgcatgtcg ccagacttca tggataagcc
    79201 cggtctgtcc ggcatccggg acaggcaatt taccaccgcc atccccgacg gccatcgtgg
    79261 taatgttgac cttccgccct cccggtgcgg ttgccgctgc cagctttgct gcaccggcag
    79321 tggtgataac ggttttgaat tttgtgctca ttattcctca cttatccggg gtaaaccgta
    79381 attacatcgc cgtcgtaagc cacaccaccg gcgaacaggt agccgggaat atcccgggta
    79441 atgttcaggc caataagatg acggcttgca ggtttggcat cagcaataag ccgttccatt
    79501 tcctgataca ttgcctctgt gatgccgctt tccagtacgc caatatcaag ccggaaggtg
    79561 cctggcgggt cactggtttc ccaccactcc gtcacgttga tgagatagcc cagcggctcc
    79621 accacacgcc ggattgcacc tatagtgcct ttatgacagt ggatgaaata ggcatcgcga
    79681 ataacggcgc gtttggtcgc ttccggccac ttttcatccc acctgtcgac cgaaaacgcc
    79741 cacgccagcc acggcagcag atttgccgga caggtatccg ggttccacag atcacgaata
    79801 ctgaccggcg ttttttcaat ttccgcacag gcttttgcgg cggcgacttc aagcggtgat
    79861 gagccggtcg gcagcaggcg cgaatcactc atccgagcct ccggtcacga cgcggtattc
    79921 ggtacagaaa gacgcctgcg tactgttgag cacaatgtcg gccagtggtg cagccagttc
    79981 gacacgctgc acgccttcca catgcaaagc ggcataaatg gcagacagac ggatgtcgcg
    80041 ccccagccgg tgctgtgccg tgatgtacgc ttccagtttt ttcacggcgg cagcgcggat
    80101 gggttcgctt tcgggaccag ggtaaaggta aagcgtggcg tttatctggt attcaacgat
    80161 ggcggcagac tgcacggtca cgcggtcggc taccggcctg acgtcctcgc cattaagggc
    80221 gttacgcacc accgccagca ggtcttcgga tgcgacaccg ttattttcac gtgacagcac
    80281 agagatggtg acgcaggccg gagaaggact ggtgacagag atatctgcga cacgcccgtc
    80341 ggcacttcga ccatgatact gataggcccc caccgacccg gcgacgctta aaccttcaaa
    80401 cgcctgctga atacgcagac gataatcggt gtcagattcc atctcggccg gtgtcggcgg
    80461 gagggtcgaa tcatctgccg gggtgataat caggcgcgcg gtgttgtaat tggcaccaat
    80521 cacatcaagg tcattaccgg cagcacaggc cagcatcacc gcccgtgcgg cctcattcac
    80581 acgctgacgc cagataagct cacgataagc attttcctcc agcagtttga cgagaggctc
    80641 agattcaagc gtcagggtac gggcgaccgc ctcctgctgg tcttccgggt aaagggaaat
    80701 cagtgtcgcc ttgcgttcgg caagaatggt ttcaaagtcc agctcctcga ccacatccgg
    80761 tgcgggtagc tggttcaggt cgataatcgg catggtttca actcacaggg atggttaacg
    80821 aaagtggctg gccggtgtcg ttgtgctgac cggttaacgt gaccgtcatt cgcccgtcaa
    80881 aactgcgcgc cgtggtgacg gatgacaggg tgacgcgggg ttcccatttc agcactgcca
    80941 tgtaacaggc gaccttaatc tgcaactcaa gcgccggggt ctgcggctgg tcaatcattg
    81001 atgccagcaa cgagccgtaa tcacgacgca tcacccgtga gccgaccggt gtgcgcagga
    81061 tatcgccgat actctggctg atatgctcaa ggtcagtgac cgtcaggcca tcactgcgat
    81121 tcattccgag ataacgcgct gtcatagagg actcccggtt gtgccgccgc tgtcgccggg
    81181 gtgtttatgg gtatgcagta ccttcccgtt tgatgaaagt tcaccgccgg tgtgttcaat
    81241 gttgccgcgc atcgtcccgc ccttctgcac ttccagcgtg ccggtaatca gcttgttggt
    81301 gcagaccacc tccggtgtgt ccagggtgac gcgggttgat gctttcacca tgaccaccgg
    81361 caccgtggca gtaacagaat cagaagccgt cacgctggcc gttttaattc cgcttaccgt
    81421 gagtgcactg gtttcaggtt catactcaat caccgccccg tcagggaaac ggatatgcag
    81481 ggcatccgcc gacgccgacg gcgcggggtt atcgccggaa taaatccccg gcagaacgaa
    81541 cgccgtgtcg agttcaccgc ccacggccag aatcagcacc tgttccccca cggaaggtgc
    81601 ccaccatgtg cgcgaacgac cggcgcgatg ggtcagccac tgaagccagt cggtgcacat
    81661 gccgccggtc tgcacacggc agcgaccggc attaaggtcg gtttcgacga taatgccagt
    81721 gcgaatcata ttgcgtataa agcgaagaat ttcattgtat tgtgcattca ttcgataata
    81781 atgattctgt acaatctcga agtaaatcac accacgattt ctggtgcaca gaacaacaag
    81841 ggacaacaaa atccattatg agtacttact ttttctcgtc agaaacaatg aaagaattgt
    81901 tcaaagatta tctggtcttt ttgaacacgc tgactcccgg cacaaacttt gaatcaagca
    81961 gaaacaaaat aattgctcaa gcaataaact tcatttccga aaaccctgaa gattgggaca
    82021 aaaaatccca gtacaacatt gctatgattg gcgacacctt taaaagtttc ttaagagaaa
    82081 agggagaaga taacaacagc atcaacctta tattcacttg cttttttaga tttatcattg
    82141 aaccaagcat tctctctccg gaaatagagt ctcacttttc accactaaga accatcaagg
    82201 attttgctct gtataactat aatgaattcg atgagcggag cagagcacag atagactttt
    82261 ctcttagata actgccatta gcaatggtta aagaagtttt aagctccagc aatgttgaca
    82321 catataaaaa atacattgat agtttaaacg aagggcgtca atttttcgaa aagtgcgact
    82381 ccttcttaaa ggagcaacat gccaaaatag agtcaatcaa agagtcatta aaagggtatg
    82441 aggtcgcatt taattttgtt ggattgtttg aaggctttaa ttcacttggc aaaaagaaag
    82501 aaagtgaaat catgctatca agaataattc ttatcatctt ggctataatc attccctccc
    82561 cgctgatata ctatggaatg cataaattac cagctctcga aacgacaaat gctgccacat
    82621 attttatgtc agcactacct tttgcatcag ttacattgat tttcatgtat tactttagag
    82681 ttgtactgct aaatcatata tcgttacgaa ctcagattat gcaaatagaa ctcagaaaga
    82741 gcctttgtca gttcattcag agttatagcg actattcctc agagataagg aaaaacaatc
    82801 cggaagcgct ttcaaaattc gaagacgtag tattttcaaa catcatgcta tccgatgata
    82861 agataccatc tacatttgat ggcattgagc aaatagcatc gttaatcaat tcattaaaaa
    82921 atggaaagta atgataaaag gccaataact ggccttttat ttattaacat gaaaattcaa
    82981 aataaattat gctaatcaat tgatttctat cttatattct cagatgatta aagctaacga
    83041 ttcaggtgag ccaggataat ctcttcaatc atctgcacat cctcaccggt aaagccgagc
    83101 agaggacgcg ccggatattc aattttctta ccgtctttcc gggtttcttc cgacagaccg
    83161 aactgatgca cactggctat tttcggtgac ttcccgccgt aaaactccat tgatgcctgt
    83221 tcagggctgg cgcggatatg caaaaaacga ctggtgataa gtttcgcaaa catttttcgc
    83281 ttaacgcgac cggtcttttt tctggcgctc tgctgctggc gtggtgcgta gggtgtgccg
    83341 tccggggctt tctgtgccat cacccgacgc tgctgactct gacgcagacg tttcgccagt
    83401 tcggcgctca gtcgccgacg ccctgacggt gacagcgact caatcagtcc ggtcagcctg
    83461 tcttcaaaac gcttaaactc attcatccca cttactcacc agttcgccat tgatataaag
    83521 ctccatcggg cgggtgaccg gctccggcgg cggaggttcc gggatattct tcacatgcag
    83581 cgcgccgtcc acctcactga ccagcgtgcg ctcggtcagc atcaggctga tgctgatatc
    83641 aaagctgctg tcattgttga tgtctgcata aaacgtgaag ccctttttct ggccttcgtc
    83701 ggtggtcatg atgtcgggct gattttcccg cagccacgcc agcaccggca cgatgagcag
    83761 gtcaaaatca ccggtaaagt cggtcacaat gacattgagc gtgtaacgct tttcgaacga
    83821 cagcgacgtc gccagtgtgg aggcaatact cccgttatcc acgaatatcc gcagcatatc
    83881 ggggttagtt ttcagcaccg tgacggcatc agtcagcgcc ctgcgcaggc tgtcgggttt
    83941 gagcatcgtt ttcgtcctga cagtgtttaa tcatttttac ctggctggca cagcgtgcca
    84001 gcgcgttctc aagctgccgg atatcggcac ttaaatcgcc gttcttctgc gggtcactgc
    84061 ccggcatcgg gcaaaggctc actttcgggc aggcgttggc gacaatcact ggcgtcagtg
    84121 caggccggac gctggtgcaa ccggcgcaca gcatcaggca ggtcagcgcc ataccagcgg
    84181 cggaaatcct cgttttcatt aagtaacctc gtgatggttt tctcgcgcag tgcttcacgc
    84241 ttcgcggcgt tctccagttc ctgacgcagt gccacctgcg ccagctcgtt tttgtctgcc
    84301 ctggtgagtg caacatgaag ctgatttttc agcatggtga tggtcgtctg ctgcccgctg
    84361 gcgacgctgt tcgccctgtc cagtgaggtg cgcaggctgg cattttcatg cttcaccaga
    84421 aacagccccg gcaccgccag tgataacaac acaaccagca caatcatcag ctttgacatg
    84481 gttcccgccc ctcaaaacgc tgacggcagg ccgtacgtat cagccggaag aacaccgacg
    84541 ccacaagata aatcagcgcg gtaaaaatcc acccggcagc gaccagcgcg ataaacgtcg
    84601 ccaccatcac caccagagcc gccgcccgtc tgcgccacgg caccggctgc aaaaacagcg
    84661 acgtgacaat cttcacggcc agcgattccg gaggcagctc ccgcccgtag cgttccagca
    84721 catactcagt ggcatacacc ccgacaccac cggtaaccac acagataacc gtcgccagaa
    84781 tcgcccaggc ggcgacaaaa ttgacggcca cgctctgcgg gtaaatcagg gacagtgcca
    84841 gcatcagcgc cagcgacacg ttcagcatct gtgaaaggga taatttcttc atggtgttta
    84901 ctccgtttaa gccggtacgc cgccagcggt acgccagacg gtgaccagtt tttccagtga
    84961 atgctcacgc tgaccgtaac cggcacccgg cagggacgcc cagatattgc gacagcgtga
    85021 aatggcgcgc tcaatacgtc ccgcccggat gtcatccagc gcaccgcgtt cgcggatcaa
    85081 ctgaatggcg agtctgtcct gtgacaacgg actgaaatcc ggcagggcaa gctgtttgcg
    85141 gtaatgcggc cagaacaggt aaagctgctg atagcgaccg gaggccgtgg atttttcacc
    85201 gcgacggtta aacaccttcg ccggtcggcc atgtgcgaac gggtggtcac tgtagtcggt
    85261 gaaaatttcc ggctttccgt ccagtccggt gactatcacg tcatagcccc ggtttttcgt
    85321 cagcggatgg ttcgccgtcc cttcggacac ggccagcatg tcgagaaagg cggcgatatt
    85381 ctgatgcgtg ttaataaccg gcattacggt ttccccctgc ccttaaagcg gcgctgaatg
    85441 gcaatctcaa tcacctgata accggcgata cccagcatgg agccgatgcc gcacaccgca
    85501 ggcaatgaca ggtcaggaaa ctgcaccaga acaacaccgg caaccatcga gacaaaacca
    85561 ccgagcaaca tgcgcccgat aaacagacgc ggggtgatgg gttcaccacc ggcaagcacc
    85621 ttgccgacaa caatcagcac cccaatcatg aaaagcgaca ggacgctttt ttcttctgct
    85681 gtcatgcgtt actcccacag attgacagtt tcagccacgg gcgcggtctg aacgtcgggc
    85741 agttcgacgg cggtgccgtg cggcagcacc gcgcccagtt cagccagtcc cggatttgcg
    85801 gcgagcacgg tctcaaccac gccctcagtg cgcccgtaat accggacaca aatggcgtcg
    85861 agcgtgtcgc cctgtagcgc aaaggtcttc atcagatttg actcacgatg cagcgcggct
    85921 tgtcctggat gcgcgccacc gcccagcgca tatcccgcca cagctcatca atggtgctgt
    85981 caatgctgtc agccttcttg tcgcctttcg cactggcatc cacgccgcga taacgctcat
    86041 acagcgacgc ggtcgccatc gcacacacgg cgcgctcgta gtaaaaaacc ctgatgcttt
    86101 caccgtcgat gtcgtccgcc gggacgtccg ccagacgcgt aaaaccggcg gcaattttct
    86161 gttcgcggta ctcgtacagc tccgcatttg tttccgccat gcctgacttg atggcctcac
    86221 gcagacgggc gggggcgaca gtctgctcaa ggcgcatacg ttcccggacg cgcttcgggt
    86281 cgatatcggg aaaaaagaac gtgtttttaa tcaccggctc gtcgcctgcc agttgcggga
    86341 tgaccaccgt accctcaccg gacacgggag cctcctttcg cggaataatc agcgtcatca
    86401 tgactacctc tgaaaagtcg ggcggtggac gccggtgcag tgtcagatga ttcaccctca
    86461 ctgaccggcg tgccgccctg gcgcggggcg cattcggttg ttaactggct ttctttttcg
    86521 ggcgtccacg ttttgccggt gtcacgctcc gggtcttacg cggggtacgg gtggccgctt
    86581 ttggctgcgg ctgcggctcc ggcttcggtt tcagctcccg ctccagtcgt tcaatctctt
    86641 ttttgacgcc tgcctgacag tcgagctgtg tcgcacgttg caggtgcgcc agcgcaccgg
    86701 cggcatcacc accgtcacgc agaaacagac cggtgatttt gtgcagcttt gcgcgcactt
    86761 catcaggcat gtcagcagcg gcagtcagtt caagggtctc cgtcagcagg cgggtatcca
    86821 cagactcacc ggcagcgtgg gcacgcatgg ccgcaagcgc gacctcctcg gtgaacatgt
    86881 acggcggggt gcggcggtgt ttacccggca tggtcagacc gtacttcagg gcataacggg
    86941 caatctccag cgcaccggca atatcgccgg tatccagacg ccacagcatg accgtcatca
    87001 gaatgtcatc ctgtgcacct ttgccctgct ccagcacgcc gttcacccac ggcaaccaga
    87061 acggcagcag ttcgcgtttt ttcgcggcct tcagctcttt tgaataaatc gctttcagtg
    87121 tgcgctggtc tgcggcgagc ttaaccagca tctgctcata gacagttgca tgtcgcagcg
    87181 gggcggcttc ccgctgcgcg gtcatcgctg ccgagacccg catcatgtgg cgctgtgcgg
    87241 gactcgtcat cggttacgct cccggctctg cggtcgcttt agccggtgtg gagaagtcac
    87301 cgaccttgat tttttccacc agacaaccgg cggcgtagtc ttccaccacg taatcaatgt
    87361 tcattgactc gtagttctcc acgcggtcga gtttcgggtt ttccacaatc acgcggcgat
    87421 ggctgtcatc catgtagtag atggacaggt tttccagctt cgtgatgagc atcgcatccg
    87481 ccgggaagta cgggacgcgc actgccggca ggttaccgat gcgtttctgg ctgatgatga
    87541 cgtcagcggc cagcatctcg ctgttgtcct gctccttgtt gacgatgggg aaatacttgt
    87601 ccgccagtag ctgacgcccc acaatcacca caaggtcagg gtcttcctga taccacggct
    87661 caatcaggtt gttggtcgca tccatcacca gtgcatcgag gctggcataa tcaccgccct
    87721 tacccacgcg gatgacctca gaggtcgtgt gaccttcctc gtcagtaacc ttgctcatca
    87781 cgcgcgccgg ggcttcattg cggtatttct gcagccagcc gaccgccaca tcctgcagca
    87841 tctggttact gctgcggtca gaggtttcgg cacgcctcac gccgttaaaa ccggccatga
    87901 ttaaatcaag ggactggcgt ttgataatgg cgttacggac acggagctgg aaatcctgat
    87961 aacgcgccca caggtccagc gttttgtagc ggatataaaa atcgaagtta atctggtcgc
    88021 attcgtactt gtttgacgcc agcttcgaga agtccttcgg ctgacgctcg gtgccaccgg
    88081 cggtgtcggt ggtgctggcg atggagccgg tgacaccaat accaattttt tcccctttca
    88141 tttcgctgac cggcacaatg ttgatgcggg tcagaaagtc agaggactcc tgcatggtgt
    88201 tcatcagggt ctgggtgacc gacggttcaa cggtgaattt tttcgacaca tcaccggcgt
    88261 cgatgccgtt cagttcggca acacgggaca ggtaggcatt aaatttaaag cgggtttcct
    88321 ggcgcatagt ttttcctgaa attaagggtt aatcgtgaag gttttcccgg actgactgac
    88381 gccggtcagc agttcgtcat cagggcgtca ccgccaccac cggtggcctt gctgcggcgc
    88441 tgctgggtca gactttcggt gttgtcgaga ctgtttttca ggcggctgaa tgcctgactg
    88501 gtttcatccg ccctgtcagt cacctcctgc ttaagtgcgg aaaaggcggt ttccacctca
    88561 gcgaggcgct gctcagtggc gctcagtttt tcctgcacat gttcagcaac agcggtcacc
    88621 gcttcatgca cgtcattcag acgggcgtca tcgctggcct gtttgcggcc aaaaatggat
    88681 ttcacctttt cggtcagggc ggtgaacacg gtttcaggca ggtcttcaaa ttccagctca
    88741 acgggcgttg ccactgaaat caggttttca gggcttaatt tgaagcggtt cagggggttg
    88801 tgttttgccg tgcggcagaa ttccaggtat tccgtgccga ggcttgccgg gtcatcggtg
    88861 acggccagcc ccaccagata acatttgccg gtgttggcaa agttcggctg aatttccatt
    88921 gaggtgtaga ccttctgcgc ggccttgttc atcgcgataa ggtcatcggt cggggtgatt
    88981 ttcgcaaaca gcgcccattt gcctttcagc gccgaatcgt catcaatctt ttcggccttc
    89041 agttcgacca catcgccata acgtttaaaa ataccgtcag gcaggatgcc gcgcagatgt
    89101 tccaggttaa tgcggcaacc gtagacacgc gggtcaaagg tttcggccat ttcctgaata
    89161 tcctgcgcac tgatgacacg cccgtcacag gtgtcaccct caacgccgat acgaaagaat
    89221 tttgagactt tttttgccat tgtcaggagt cctgaatagt gattagagga gtcacatgtc
    89281 ggcatcagtt tcccgacgat gcgcatcctc cgccatcagt cccggatggc ttatcactga
    89341 cacaacagca ccttagcgaa tcgcggggcg cgactcagta gccttgccgt gtattcatca
    89401 cggcgaggta ttcatgacca tcaccacaga caccactctt ttacacgacc cgcgtcgtca
    89461 ggcggcgctg ctgtactggc agggattttc cgtgccgcag attgccgcca tgttgcagat
    89521 gaaacgcccg acggtgcaga gctggaagca gcgcgacggc tgggacagcg ttgcccccat
    89581 cagccgtgtc gaaatgagtc tggaagcgcg gctgacccag ctcatcatca aaccgcagaa
    89641 aaccggcggt gacttcaagg aaattgacct gctcggacgc cagattgaac gactggcacg
    89701 ggtcaaccgt tacagtcaga ccggcaacga ggcagacctt aatccgaacg tcgctaaccg
    89761 caacaaaggc gggcgtcgca aaccgaaaaa gaattttttc agtgacgagg ccatcgaaaa
    89821 gctggagcag attttctttg agcagtcttt cgactatcag ttgcactggt atcgcgccgg
    89881 gcttgagcac cgcatccgcg atatcctgaa atcccgccag attggcgcga cgttttattt
    89941 ttcccgcgag gcgctgctgc gcgccctgaa aaccggccat aaccagattt ttctgtcggc
    90001 cagtaaaacg caggcgtatg tgttccgtga atacatcatc gcctttgccc gtctggttga
    90061 cgttgacctt accggtgacc cgattgtcct gggcaataac ggcgcaaaac tgatttttct
    90121 cggcaccaac tccaacaccg cacagagcca taacggcgac ctgtacgtcg atgagatttt
    90181 ctggatcccg aattttcagg tactgcgtaa ggtggcatca ggtatggcct cacagagcca
    90241 cctgcgctcg acctatttct ccaccccgtc cacgctggcg cacgacgcct acccgttctg
    90301 gtcgggtgaa ctgttcaacc ggggacgcgc cagcgccgcc gaacgcgtgg aaatcgacgt
    90361 cagtcataac gcccttgccg gaggtcttct ctgtgcggac ggccagtggc ggcagattgt
    90421 caccattgag gacgccctga aaggcggctg cacgctgttc gacattgagc agctcaaacg
    90481 cgaaaacagc gccgacgatt ttaaaaacct gttcatgtgt gaatttgttg acgacaaggc
    90541 atcggtgttc ccgttcgagg agctgcaacg ctgcatggtc gacacgctgg aagaatggga
    90601 agactatgca ccctttgccg ccaatccgtt cggctcccgc ccggtatgga ttggttacga
    90661 cccgtcacac cgtggcgaca gtgccggatg cgtggtgctg gcaccgccgg tggtggccgg
    90721 tggcaaattc agaatacttg agcgtcacca gtggaaaggc atggactttg ccacccaggc
    90781 tgaatccatc cgcaaactca ccgaaaaata taacgtcgaa tacatcggta ttgatgccac
    90841 cggcctcggt gtcggcgtgt tccagctcgt gcgctcgttc tatcctgccg cgcgcgatat
    90901 ccgctacaca ccggaaatga aaaccgcaat ggtgctcaag gcaaaagacg ttatccgccg
    90961 tggctgtctg gaatatgacg tcagcgccac cgacatcacc agctcgttta tggctatccg
    91021 caagaccatg accagcagcg gacgcatcgc cacctatgag gccagccgca gcgaggaagc
    91081 cagccacgcc gacctcgcct gggcgaccat gcacgccctg ttaaatgagc cactcaccgc
    91141 cggtatcagc accccgctga catccaccat tctggagttt tactgatgag caagaaaaaa
    91201 gggaaaacac cgcaacctgc ggcaaaaaaa atgaccgcca gcgccccgaa aatggaggca
    91261 ttcacctttg gtgagccggt gccggtactc gaccgccgtg acattctgga ttacgtcgag
    91321 tgcatcagta acggcagatg gtatgagcca ccggtcagct ttaccggtct ggcaaaaagt
    91381 ctgcgtgctg ccgtgcatca cagctcaccg atttacgtta aacgcaatat tctggcctcg
    91441 acatttatcc cgcatccgtg gctttcccag caggatttca gccgctttgt gctggatttt
    91501 ctggtgttcg gtaatgcgtt tctggaaaag cgatacagca ccaccggtaa ggtcatcaga
    91561 ctggaaacct caccggcaaa atatacccgc cgtggtgtgg aggaggatgt ttactggtgg
    91621 gtaccgtcct tcaacgagcc gacacctttc acgcccggct ccgtatttca cctgctggag
    91681 cccgatatta atcaggagct gtacggcctg ccggaatatc tcagcgccct taactctgcc
    91741 tggctgaatg aatcggccac gctgttccgc cgcaagtatt acgaaaacgg cgcacatgcc
    91801 ggatacatca tgtacgtcac cgatgccgtg caggatcgca acgatatcga aatgctccgc
    91861 gaaaacatgg tgaagtcgaa aggccgcaac aactttaaaa acctgtttct ctatgcccca
    91921 caggggaaag ccgacggcat taaaattatc ccgctcagtg aagtggcaac gaaggacgat
    91981 ttttttaata tcaaaaaagc cagcgccgct gacctgctgg acgcgcaccg catccccttt
    92041 cagttgatgg gcggcaagcc ggagaacgtc gggtcgctgg gcgatattga gaaagtggca
    92101 aaggtctttg tccgcaatga gcttatcccg ctacaggaca ggatccgcga gataaacggc
    92161 tggctcggcc aggaagtcat ccgctttaaa aactactcac tggacactga caacagctga
    92221 acatcgccgc ctgcgggcgg cttttttaca ccccgtcatc acgccctcat acgctcacca
    92281 ccgcacaaaa caccccgcag acacaccaac ggccccggcg aacaatctaa acgccatcac
    92341 gacgcgctca gacgctgaaa aaataaaatc agcaccaccg ccagcgcgca gtgctttccc
    92401 cgcctcgccc gcccgcttta tgggtcggtt ttaatgcagg tgcacgaata caccggaggc
    92461 gcgccggcac tggtggcgct cagacgcaac aggggaggaa aacgcatgca attgaatgca
    92521 tttctaggca cacctaaaaa tgaaaaaatg ttatgacaat taatcatttt aaacacactg
    92581 attaagggta gaattctcct agtaaaatca tagaaaaacc gctatcaaac caggcttttg
    92641 ccttgcttca tttttttaga tgagtctaaa aatttgaaat tatcattaga tgaaaatatt
    92701 ctttctgcgg tatgccgaat gactgaagta ttgaagaccg cagcctgctc ctcattacaa
    92761 ctgaatacac cctcatgacc atcaaactcg cccgccaaaa gaaggttttt tgatactggg
    92821 aacaaaacta aagtgtcttt tacaccaaac ccgggggaat aagggcctcg tgctaattca
    92881 ggattagtcc acattaagca aactgggtta tctgaagtta taaatgaccc ttgcccatca
    92941 gatatggtca taagtgacca gttgcgttga tgcaacaact tggtgataac aggtacacat
    93001 ttcatttcca tatctatcat gaactctctg attacattga tttcgaaatt atccccatcc
    93061 acaaaatttt taattttttc gtaagcgaga tcatatggca aagactcacc catttctttc
    93121 tcataagcta atttgcaatc gtcccaacgc tcagccgaac taactgagga tttcatgata
    93181 aactttgcta tttgtttcaa tggagatgat aaatgttctc gctgagcagg cgtacgtatt
    93241 gccaataagg aaataaactc cagaataaca tctttggttt cgcctgaaaa ctcgcccccc
    93301 tcctcaagtt ttcttaaatg agtagcgaca ctgccttcaa actctgcaag agaactctcg
    93361 agatagtttg ggtcaactcc atccaattct aatcggttga aatctctaac ccccccgaca
    93421 ttgcgagtat tactctcaaa ggttttgcgc tcctttaaat ctattacagt taattttgat
    93481 tttttccccc cattacttgt aaaccctttc aaataacatt gggataaaaa atgatgatgc
    93541 cttgcaacac tcatactcag ctccgttatg gctataatcg cataaataat aagcacttat
    93601 attgcaatca tctagttaaa tacacaatat ttatgactcc gaaatttcat taaatcacta
    93661 ttgataggtt ttaccaatta gtgccagctc gaaatggatg cgtggaatct gcgaacgttc
    93721 agcctttgtc atccgccctg atggcgctat ctggtacggt tttaatggtt cgcagtttct
    93781 ttgttgccaa ttcggtctcg gtgcaccatg ttttaatgca ctcctgagca ccgtcacaac
    93841 ttccgggtca tcccatccga taacaccact atcaaccaga tttaacaccg ctgcggcatg
    93901 ctcagacggt gtagggtgca taaccggaac gtcaccgccg gtgaactttc cacagttatt
    93961 gacaggactc cgaggcgcgg cgatgccgct ttttaaagtc aaaggctcaa cgaccggcac
    94021 tttcggcaca atgcgccagt ccgtcgttct ggtgatatga atatgacgcg cgccgagatg
    94081 cggcgcgtaa atgccgacca ctctctcgac ttcttcctcg tactcgttaa cttcatccga
    94141 cgggctacgg gcgaccctga cagtctgaca atcgcgcggg acatttgccc caccctgcgc
    94201 gctgatatac aacgcaaaat caccactgtc tgcggcggcg cgagcagcct cgacgcgctc
    94261 gtcaaactca tcagcaatgc tgacgccgcg cggcaatttg cgtagttcac ggtaagcccc
    94321 cattgtcggc agaccaaccg ttttaaattg tgggatgcgc cacgttgacg cccatgcggt
    94381 aacagccgcg gcagtatctt taagcggctt accggtatcg ttatcgagct gaccatccag
    94441 tgcatagccg tcgatatttt ttgagatgta tttcgcgata taccccgcag caccgccccg
    94501 gttaaggtgt ttcgcctgaa aacggtttcg cgcagctcct ctttcgtcgc catcctcttt
    94561 gagcgcatag cgacgcatga tttcgataat ctggttacgc tggcgcggat tacaaaaaag
    94621 catcatatgc cagtgcggcg ttccgtcgtg gtgtggctcg acgacacgca aaccgtagac
    94681 ctgtaaatca ttatccttga atgccgtgcg catcaggctc cagatacggc agagataacg
    94741 ctgcgcatcc tttggattaa atgcctcatc gttccagccg tgatttagct ggacggtttt
    94801 actttcgcct tttctgacct gacgtgtcgg gtgatacttt gacggcgcgg tcagcgtgat
    94861 aaacatcccc acatcaccct ctgctgcggc gtaacgctca ataccggcaa tggtgttcat
    94921 cagctccatc cggcgaattt caggattaga aatactgccc atcaccttac tgataaggtc
    94981 gatgcgctcg ccggtttccc tgttttcaag gtcacatgat ttaagaaatt ccagatttgc
    95041 ctggcggcgc gcacgcacat cacgaatggc atgtttactg gcataaggag aacggtcttt
    95101 attgacctcc ccgacagcta tcagtaacgc ctcatgccag cgcatacgct ggcctttaag
    95161 ctgatgagtc caccactcat cgttaaacag gcgggcaatg gcagaatatg cctgcctcgt
    95221 ggtcatctgt cctttacggt attttttcca gtagaacggg gaaatattga aagcacgtgc
    95281 agcgccagca acatgaccat aaaggtgagc ctgcgcctca tccgtaaaca gcgattcttt
    95341 ttcgccatgt gcatcaaccc aggcatcgca gagttcctca tacatcatga aaagctgcga
    95401 tgagatacgg gcagcaaact ttttcagctc cttgtcattc attcccggca ggcgcgcata
    95461 gtggtcacgc tctgccagaa acagcaacga cgcgtcggtg ttcatttcat ggcgctgatt
    95521 cacacgctca atgcgcggcc ataaacgacg ctgaaaagtg gatgtgagga aataaaaccc
    95581 gtgcaccggg cttttattgc gccggatgta gtcataacgt gaagtaaaca gcgagcgcaa
    95641 aaagtaaggc aggcggttaa tcgtggataa aacaccttgc acctgacgca tctcgtcacg
    95701 tgtaaggggt ctttcgcgcc cgacagcctc gcgtggcgcg ttccatgcat aagcaccggt
    95761 aaacgtctta ccggtgcctg cggcaaatgc tgacggaggg acaaaacgcc cggaggcttt
    95821 aacggccata tgagccaaaa gcctctgaac aacgcctgct gagttgctca acctgcgcgt
    95881 ttaaatcagc aaaagacttt gcgcttccgg tcagaatatc gtgatgcatc aggccggaaa
    95941 cgagctggct taatttcggg taataaccaa ccaccgccag ccattcctga ccggcgtttt
    96001 taccgctttc cgctctcttt ttctcgtgga gaataaactg aaagctgtca ctggtaacga
    96061 cataacgttc gccaatttca atacgaatgc tcatgccatt ctccggtaat gtttgttttt
    96121 tgcttcaaag actgactgac aggaaacaca acgcgtggct gacggataag ccgcacgacg
    96181 ggcagcaggt attggcgcgt cacactcttc gcaaaccagc gaagaaacac cgcaatgttt
    96241 tacccttgcc gcgttaatct ggcgctccag taattcagtc tgttgttcct gaataaaatc
    96301 tacgttgtcc ggcattacca gttccttttg tcgttcagtt ttttaaattc atcagcgcaa
//
LOCUS       DADMHM010000002        69786 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.002, whole genome shotgun sequence.
ACCESSION   DADMHM010000002 DADMHM010000000
VERSION     DADMHM010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 69786)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 69786)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..69786
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.002"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..260
                     /locus_tag="JN125_000091"
     CDS             <1..260
                     /locus_tag="JN125_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="prepilin peptidase-dependent pilin"
                     /protein_id="HAY8869999.1"
                     /translation="GLDTCDGGSNGIPSPTTTRYVSAMSVAKGVVSLTGQESLNGLSV
                     VMTPGWDNANGVTGWARNCNIQSDSALQQACEDVFRFDDAN"
     gene            270..1644
                     /gene="gspE"
                     /locus_tag="JN125_000092"
                     /pseudo
     CDS             270..1644
                     /gene="gspE"
                     /locus_tag="JN125_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414649.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspE"
     gene            1634..2836
                     /gene="hofC"
                     /locus_tag="JN125_000093"
     CDS             1634..2836
                     /gene="hofC"
                     /locus_tag="JN125_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein transport protein HofC"
                     /protein_id="HAY8870000.1"
                     /translation="MASKQLWRWHGITGDGNAQDGMLWAESRALLLMALQQQMVTPLS
                     LKRIAINSAQWRGDKSAEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAH
                     DLEQGIAFSNALLPWSEVFPPLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVK
                     SALRYPIIILAMAIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSW
                     LLVLFGFLLAIANKLLMRRPTWLIVRQKLLLRIPIMGSLMRGQKLTQIFTILALTQSA
                     GITFLQGVESVRETMRCPYWVQLLTQIQHDISNGHPIWLALKNTGEFSPLCLQLVRTG
                     EASGSLDLMLDNLAHHHRDNTMALADNLAALLEPALLIITGGIIGTLVVAMYLPIFHL
                     GDAMSGMG"
     gene            complement(2871..3914)
                     /gene="guaC"
                     /locus_tag="JN125_000094"
     CDS             complement(2871..3914)
                     /gene="guaC"
                     /locus_tag="JN125_000094"
                     /EC_number="1.7.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008461816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP reductase"
                     /protein_id="HAY8870001.1"
                     /translation="MRIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSDQSW
                     SGVPIIAANMDTVGTFSMASALASFDILTAVHKHYSVEEWQAFINNSSADVLKHVMVS
                     TGTSDADFEKTKQILDLNPALNFVCIDVANGYSEHFVQFVAKAREAWPTKTICAGNVV
                     TGEMCEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGMIVS
                     DGGCTTPGDVAKAFGGGADFVMLGGMLAGHEESGGRIVEENGEKFMLFYGMSSESAMK
                     RHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTYVGASRLKELTKRTTFI
                     RVQEQENRIFNNL"
     gene            4139..4759
                     /gene="coaE"
                     /locus_tag="JN125_000095"
     CDS             4139..4759
                     /gene="coaE"
                     /locus_tag="JN125_000095"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HAY8870002.1"
                     /translation="MRYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGA
                     PALHAIADHFGANMIAADGTLQRRALRERIFANPEEKNWLNALLHPLIQQETQHQIQQ
                     ATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQA
                     TREARLAVADDVIDNNGAPDAIASDVARLHAHYLQLASQFVSQEKP"
     gene            4759..5502
                     /gene="zapD"
                     /locus_tag="JN125_000096"
     CDS             4759..5502
                     /gene="zapD"
                     /locus_tag="JN125_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapD"
                     /protein_id="HAY8870003.1"
                     /translation="MQTQVLFEHPLNEKMRTWLRIEFLIQQLTVNLPIVDHAGALHFF
                     RNVSELLDVFERGEVRTELLKELDRQQRKLQTWIGVPGVDQSRIEALIQQLKAAGSVL
                     ISAPRIGQFLREDRLIALVRQRLSIPGGCCSFDLPTLHIWLHLPQAQRDSQVETWIAS
                     LNPLTQALTMVLDLIRQSAPFRKQTSLNGFYQDNGGDADLLRLNLSLDSQLYPQISGH
                     KSRFAIRFMPLDSENGQVPERLDFELACC"
     gene            5512..5709
                     /gene="yacG"
                     /locus_tag="JN125_000097"
     CDS             5512..5709
                     /gene="yacG"
                     /locus_tag="JN125_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor YacG"
                     /protein_id="HAY8870004.1"
                     /translation="MSETITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEE
                     KRIPSSGDLSESDDWSEEPKQ"
     gene            complement(5816..6205)
                     /gene="mutT"
                     /locus_tag="JN125_000098"
     CDS             complement(5816..6205)
                     /gene="mutT"
                     /locus_tag="JN125_000098"
                     /EC_number="3.6.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase MutT"
                     /protein_id="HAY8870005.1"
                     /translation="MKKLQIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGE
                     TPEQAVVRELQEEVGITPQHFSLFEKLAYEFPDRHITLWFWLVESWEGVPWGKEGQPG
                     EWMSLVGLNADDFPPANEPVIAKLKRL"
     gene            complement(6265..8970)
                     /gene="secA"
                     /locus_tag="JN125_000099"
     CDS             complement(6265..8970)
                     /gene="secA"
                     /locus_tag="JN125_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HAY8870006.1"
                     /translation="MLIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELK
                     GKTAEFRARLEKGEVLENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEM
                     RTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPG
                     MPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDE
                     ARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTE
                     RGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVI
                     IVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTG
                     TADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQ
                     PVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAAVTIATNMAG
                     RGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRR
                     IDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVT
                     KAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELLDVSDVSETINSIRED
                     VFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPIAEWLDKEPELHEETLRERIL
                     AQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKD
                     PKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEELEQQRRMEAERLAQMQQ
                     LSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGKKYKQCHGRLQ"
     gene            complement(9032..9544)
                     /gene="secM"
                     /locus_tag="JN125_000100"
     CDS             complement(9032..9544)
                     /gene="secM"
                     /locus_tag="JN125_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414639.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secA regulator SecM"
                     /protein_id="HAY8870007.1"
                     /translation="MSGILTRWRQFGKRYFWPHLLLGMVAASFGLPALSNAAEPNVPA
                     KATTRNHEPSAKVNFGQLALLEANTRRPNSNYSVDYWHQYAIRTVIRHLSFAMAPQTL
                     PVAEESLPLQAQHLALLDTLSALLTQEGTPSEKGYRIDYAHFTPQAKFSTPVWISQAQ
                     GIRAGPQRLT"
     gene            complement(9775..10692)
                     /gene="lpxC"
                     /locus_tag="JN125_000101"
     CDS             complement(9775..10692)
                     /gene="lpxC"
                     /locus_tag="JN125_000101"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000595491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HAY8870008.1"
                     /translation="MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDL
                     NPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIP
                     IMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTID
                     FNHPAIDSSNQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVV
                     DDYRVLNEDGLRFEDEFVRHKMLDAIGDLFMCGHNIIGAFIAYKSGHALNNKLLQAVL
                     AKQEAWEYVTFQDDAELPLAFKAPSAVLA"
     gene            complement(10793..11944)
                     /gene="ftsZ"
                     /locus_tag="JN125_000102"
     CDS             complement(10793..11944)
                     /gene="ftsZ"
                     /locus_tag="JN125_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015965916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HAY8870009.1"
                     /translation="MFEPMELTNDAVIKVIGVGGGGGNAVEHMVRERIEGVEFFAVNT
                     DAQALRKTAVGQTIQIGSGITKGLGAGANPEVGRNAADEDRDALRAALEGADMVFIAA
                     GMGGGTGTGAAPVVAEVAKDLGILTVAVVTKPFNFEGKKRMAFAEQGITELSKHVDSL
                     ITIPNDKLLKVLGRGISLLDAFGAANDVLKGAVQGIAELITRPGLMNVDFADVRTVMS
                     EMGYAMMGSGVASGEDRAEEAAEMAISSPLLEDIDLSGARGVLVNITAGFDLRLDEFE
                     TVGNTIRAFASDNATVVIGTSLDPDMNDELRVTVVATGIGMDKRPEITLVTNKQVQQP
                     VMDRYQQHGMAPLTQEQKPVAKVVNDNAPQTAKEPDYLDIPAFLRKQAD"
     gene            complement(12005..13267)
                     /gene="ftsA"
                     /locus_tag="JN125_000103"
     CDS             complement(12005..13267)
                     /gene="ftsA"
                     /locus_tag="JN125_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017374018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HAY8870010.1"
                     /translation="MIKATDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSR
                     GMDKGGVNDLESVVKCVQRAIDQAELMADCQISSVYLALSGKHISCQNEIGMVPISEE
                     EVTQEDVENVVHTAKSVRVRDEHRVLHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHL
                     ITCHNDMAKNIVKAVERCGLKVDQLIFAGLASSYSVLTEDERELGVCVVDIGGGTMDI
                     AVYTGGALRHTKVIPYAGNVVTSDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDESVE
                     VPSVGGRPPRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEKLRQQGVKHHLAAGIVL
                     TGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKESHLN
                     GEAEVEKRVTASVGSWIKRLNSWLRKEF"
     gene            complement(13264..14094)
                     /gene="ftsQ"
                     /locus_tag="JN125_000104"
     CDS             complement(13264..14094)
                     /gene="ftsQ"
                     /locus_tag="JN125_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsQ"
                     /protein_id="HAY8870011.1"
                     /translation="MSQAALNTRNSEEEVSSRRNNGTRLAGILFLLTVLTTVLVSGWV
                     VLGWMEDAQRLPLSKLVLTGERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQR
                     LPWIKQVSVRKQWPDELKIHLVEYVPIARWNDQHMVDAEGNTFSVPPDRTSKQVLPML
                     YGPEGSANEVLQGYREMGQMLAKDRFTLKEAAMTARRSWQLTLNNDIKLNLGRGDTMK
                     RLARFVELYPVLQQQAQTDGKRISYVDLRYDSGAAVGWAPLPPEESTQQQNQAQAEQQ
                     "
     gene            complement(14096..15016)
                     /locus_tag="JN125_000105"
     CDS             complement(14096..15016)
                     /locus_tag="JN125_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HAY8870012.1"
                     /translation="MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE
                     VDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKL
                     LWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAE
                     NALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLS
                     DETQYFCPAGLDASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPG
                     MTSHSLVPMAARQAGMSFSQLVVRILELAD"
     gene            complement(15009..16484)
                     /gene="murC"
                     /locus_tag="JN125_000106"
     CDS             complement(15009..16484)
                     /gene="murC"
                     /locus_tag="JN125_000106"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HAY8870013.1"
                     /translation="MNTQQLAKLRSIVPEMRRVRHIHFVGIGGAGMGGIAEVLANEGY
                     QISGSDLAPNPVTQQLMNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEAR
                     IPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAG
                     VHARLGHGRYLIAEADESDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFL
                     HNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLR
                     QDKEPMRVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFLGTGRRFDFLGEF
                     PLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYD
                     DFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRGRGKIDPILVPDPAQVAEML
                     APVLTGNDLILVQGAGNIGKIARSLAEIKLKPQTPEEEQHD"
     gene            complement(16538..17605)
                     /gene="murG"
                     /locus_tag="JN125_000107"
     CDS             complement(16538..17605)
                     /gene="murG"
                     /locus_tag="JN125_000107"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HAY8870014.1"
                     /translation="MSGQGKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADR
                     MEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGM
                     GGYVSGPGGLAAWSLGIPVVLHEQNGIAGLTNKWLAKIATKVMQAFPGAFPNAEVVGN
                     PVRIDVLALPLPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQS
                     GKGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPA
                     LFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGWSRETLLTMAERAR
                     AASIPDATERVANEVSRAARA"
     gene            complement(17602..18846)
                     /gene="ftsW"
                     /locus_tag="JN125_000108"
     CDS             complement(17602..18846)
                     /gene="ftsW"
                     /locus_tag="JN125_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsW"
                     /protein_id="HAY8870015.1"
                     /translation="MRLSLPRLKMPRLPGFSILVWISTALKGWVMGSREKDTDSLIMY
                     DRTLLWLTFGLAAIGFIMVTSASMPIGQRLTNDPFFFAKRDGVYLILAFILAIITLRL
                     PMEFWQRYSATMLLGSIILLMIVLVVGSSVKGASRWIDLGLLRIQPAELTKLSLFCYI
                     ANYLVRKGDEVRNNLRGFLKPMGVILVLAVLLLAQPDLGTVVVVFVTTLAMLFLAGAK
                     LWQFIAIIGMGISAVVLLILAEPYRIRRVTAFWNPWEDPFGSGYQLTQSLMAFGRGEL
                     WGQGLGNSVQKLEYLPEAHTDFIFAIIGEELGYVGVVLALLMVFFVAFRAMSIGRKAL
                     EIDHRFSGFLACSIGIWFSFQALVNVGAAAGMLPTKGLTLPLISYGGSSLLIMSTAIM
                     MLLRIDYETRLEKAQAFVRGSR"
     gene            complement(18846..20162)
                     /gene="murD"
                     /locus_tag="JN125_000109"
     CDS             complement(18846..20162)
                     /gene="murD"
                     /locus_tag="JN125_000109"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HAY8870016.1"
                     /translation="MADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL
                     DKLPEAVERHTGSLNDEWLMAADLIVASPGIARAHPSLSAAADAGIEIVGDIELFCRE
                     AQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDAECELYVLELS
                     SFQLETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDALT
                     MPIRGADERCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAA
                     LALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGL
                     QVDGTLHLLLGGDGKSADFSPLARYLNGDNVRLYCFGRDGAQLAALRPEVAEQTETME
                     QAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKELG"
     gene            complement(20165..21247)
                     /gene="mraY"
                     /locus_tag="JN125_000110"
     CDS             complement(20165..21247)
                     /gene="mraY"
                     /locus_tag="JN125_000110"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HAY8870017.1"
                     /translation="MLVWLAEHLVKYYSGFNVFSYLTFRAIVSLLTALFISLWMGPRM
                     IAHLQKLSFGQVVRNDGPESHFSKRGTPTMGGIMILTAIVISVLLWAYPSNPYVWCVL
                     VVLVGYGVIGFVDDYRKVVRKDTKGLIARWKYFWMSVIALGVAFALYLAGKDTPATQL
                     VVPFFKDVMPQLGLFYILLAYFVIVGTGNAVNLTDGLDGLAIMPTVFVAGGFALVAWA
                     TGNMNFASYLHIPYLRHAGELVIVCTAIVGAGLGFLWFNTYPAQVFMGDVGSLALGGA
                     LGIIAVLLRQEFLLVIMGGVFVVETLSVILQVGSFKLRGQRIFRMAPIHHHYELKGWP
                     EPRVIVRFWIISLMLVLIGLATLKVR"
     gene            complement(21241..22599)
                     /gene="murF"
                     /locus_tag="JN125_000111"
     CDS             complement(21241..22599)
                     /gene="murF"
                     /locus_tag="JN125_000111"
                     /EC_number="6.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HAY8870018.1"
                     /translation="MISVTLSQLTDILNGELQGADITLDAVTTDTRKLTPGCLFVALK
                     GERFDAHDFADQAKAGGAGALLVSRPLDIDLPQLIVKDTRLAFGELAAWVRQQVPARV
                     VALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELG
                     ANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMN
                     ADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGTEFTLQTPTGSVDVLLP
                     LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYN
                     ANVGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSVGK
                     QSHAISTASGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQENG
                     TC"
     gene            complement(22596..24083)
                     /gene="murE"
                     /locus_tag="JN125_000112"
     CDS             complement(22596..24083)
                     /gene="murE"
                     /locus_tag="JN125_000112"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HAY8870019.1"
                     /translation="MADRNLRDLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGH
                     QADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFY
                     HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTG
                     SAVDVQHELAGLVEQGATFCAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDM
                     EHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKV
                     IDVNYHDSGVTIRFSSSWGDGEIESHLIGAFNVSNLLLALATLLALGYPLADLLKTAA
                     RLQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDK
                     GKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTC
                     AVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVARLLGVIA"
     gene            complement(24070..25836)
                     /locus_tag="JN125_000113"
     CDS             complement(24070..25836)
                     /locus_tag="JN125_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000642204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase FtsI"
                     /protein_id="HAY8870020.1"
                     /translation="MKAAAKTQKPKRQEEHANFISWRFALLCGCILLALAFLLGRVAW
                     LQVISPDMLVKEGDMRSLRVQQVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAG
                     GISVGDRWKALANALNIPLDQLSARINANPKGRFIYLARQVNPDMADYIKKLKLPGIH
                     LREESRRYYPSGEVTAHLIGFTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVI
                     EDISSTDSQAAHNLALSIDERLQALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMA
                     NSPSYNPNNLSGTPKEAMRNRTITDVFEPGSTVKPMVVMTALQRGVVRENSVLNTIPY
                     RINGHEIKDVARYSELTLTGVLQKSSNVGVSKLALAMPSSALVDTYSRFGLGKATNLG
                     LVGERSGLYPQKQRWSDIERATFSFGYGLMVTPLQLARVYATIGSYGIYRPLSITKVD
                     PPVPGERVFPESIVRTVVHMMESVALPGGGGVKAAIKGYRIAIKTGTAKKVGPDGRYI
                     NKYIAYTAGVAPASQPRFALVVVINDPQAGKYYGGAVSAPVFGAIMGGVLRTMNIEPD
                     ALTTGDKNEFVINQGEGTGGRS"
     gene            complement(25852..26217)
                     /gene="ftsL"
                     /locus_tag="JN125_000114"
     CDS             complement(25852..26217)
                     /gene="ftsL"
                     /locus_tag="JN125_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000625658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HAY8870021.1"
                     /translation="MISRVTEALSKVKGSMGSHERHALPGVIGDDLLRFGKLPLCLFI
                     CIILTAVTVVTTAHHTRLLTAQREQLVLERDALDIEWRNLILEENALGDHSRVERIAT
                     EKLQMQHVDPSQENIVVQK"
     gene            complement(26214..27155)
                     /gene="rsmH"
                     /locus_tag="JN125_000115"
     CDS             complement(26214..27155)
                     /gene="rsmH"
                     /locus_tag="JN125_000115"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HAY8870022.1"
                     /translation="MMENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQ
                     LGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDL
                     GVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERF
                     AKRIARAIVERNREQPMTRTKELAEVVAAATPVKDKFKHPATRTFQAVRIWVNSELEE
                     IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKL
                     GGRQLRALGKLMPGEEEVAENPRARSSVLRIAERTNA"
     gene            complement(27157..27615)
                     /gene="mraZ"
                     /locus_tag="JN125_000116"
     CDS             complement(27157..27615)
                     /gene="mraZ"
                     /locus_tag="JN125_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HAY8870023.1"
                     /translation="MFRGATLVNLDSKGRLSVPTRYREQLLENAAGQMVCTIDIHHPC
                     LLLYPLPEWEIIEQKLSRLSSMNPVERRVQRLLLGHASECQMDGAGRLLIAPVLRQHA
                     GLTKEVMLVGQFNKFELWDETTWHQQVKEDIDAEQLATGDLSERLQDLSL"
     gene            complement(28217..29221)
                     /gene="cra"
                     /locus_tag="JN125_000117"
     CDS             complement(28217..29221)
                     /gene="cra"
                     /locus_tag="JN125_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catabolite repressor/activator"
                     /protein_id="HAY8870024.1"
                     /translation="MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVRE
                     HNYHPNAVAAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQ
                     PDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVV
                     GADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYAN
                     SYEREAAAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDN
                     ELLDFLQCPVLAVAQRHRDVAERVLEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSRS
                     "
     gene            complement(29303..29389)
                     /locus_tag="JN125_000118"
     CDS             complement(29303..29389)
                     /locus_tag="JN125_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fruR/shl operon leader peptide"
                     /protein_id="HAY8870025.1"
                     /translation="MCNLQPNMSRWAFFAKSVGTWNKSSCRS"
     gene            complement(29401..29892)
                     /gene="ilvN"
                     /locus_tag="JN125_000119"
     CDS             complement(29401..29892)
                     /gene="ilvN"
                     /locus_tag="JN125_000119"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001563086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HAY8870026.1"
                     /translation="MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLS
                     RMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVK
                     RNTEIFRGQIIDVTPSLYTVQLAGTSDKLDAFLASIREVAKIVEVARSGVVGLSRGDK
                     IMR"
     gene            complement(29895..31619)
                     /gene="ilvI"
                     /locus_tag="JN125_000120"
                     /pseudo
     CDS             complement(29895..31619)
                     /gene="ilvI"
                     /locus_tag="JN125_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025294.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 3 large subunit"
     gene            complement(31937..32881)
                     /gene="leuO"
                     /locus_tag="JN125_000121"
     CDS             complement(31937..32881)
                     /gene="leuO"
                     /locus_tag="JN125_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414618.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator LeuO"
                     /protein_id="HAY8870027.1"
                     /translation="MPEVQTDHSETAELSKPQLRMVDLNLLTVFDAVMQEQNITRAAH
                     VLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTARAFQLFGSVRQALQLVQNELPG
                     SGFEPASSERVFHLCVCSPLDSILTSQIYNHIEQIAPNIHVMFKSSLNQNTEHQLRYQ
                     ETEFVISYEDFHRPEFTSVPLFKDEMVLVASKNHPTIKGPLLKHDVYNEQHAAVSLDR
                     FASFSQPWYDTVDKQASIAYQGMAMMSVLSVVSQTHLVAIAPRWLAEEFAESLELQVL
                     PLLLKQNSRTCYLSWHEAAGRDKGHQWMEEQLVSICKR"
     gene            33542..33628
                     /gene="leuL"
                     /locus_tag="JN125_000122"
     CDS             33542..33628
                     /gene="leuL"
                     /locus_tag="JN125_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leu operon leader peptide"
                     /protein_id="HAY8870028.1"
                     /translation="MTHIVRFIGLLLLNASSLRGRRVSGIQH"
     gene            33721..35292
                     /gene="leuA"
                     /locus_tag="JN125_000123"
     CDS             33721..35292
                     /gene="leuA"
                     /locus_tag="JN125_000123"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016831521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HAY8870029.1"
                     /translation="MSQQVIIFDTTLRDGEQALQASLSVKEKLQIALALERMGVDVME
                     VGFPVSSPGDFESVQTIARQVKNSRVCALARCVEKDIDVAAESLKVAEAFRIHTFIAT
                     SPMHIATKLRSTLDEVIERAIYMVKRARNYTDDVEFSCEDAGRTPIADLARVVKAAIN
                     AGATTINIPDTVGYTMPFEFAGIISGLYERVPNIDKAIISVHTHDDLGLAVGNSLAAV
                     HAGARQVEGAMNGIGERAGNCSLEEVIMAIKVRKDILNVHTAINHQEIWRTSQLVSQI
                     CNMPIPANKAIVGSGAFAHSSGIHQDGVLKNRENYEIMTPESIGLNQIQLNLTSRSGR
                     AAVKHRMDEMGYKESEYNLDNLYDAFLKLADKKGQVFDYDLEALAFIGKQQEEPEHFR
                     LDYFSVQSGSNDIATAAVKLACGEEVKAEAANGNGPVDAVYQAINRITDYNVELVKYS
                     LTAKGHGKDALGQVDIVANYNGRRFHGVGLATDIVESSAKAMVHVLNNIWRAAEVEKE
                     LQRKAQHNENNKETV"
     gene            35292..36383
                     /gene="leuB"
                     /locus_tag="JN125_000124"
     CDS             35292..36383
                     /gene="leuB"
                     /locus_tag="JN125_000124"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HAY8870030.1"
                     /translation="MSKNYHIAVLPGDGIGPEVMTQALKVLDAVRNRFAMRITTSHYD
                     VGGAAIDNHGQPLPPATVEGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKHF
                     KLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK
                     AFDTEVYHRFEIERIARIAFESARKRRHKVTSIDKANVLQSSILWREIVNEIATEYPD
                     VELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQG
                     FGLYEPAGGSAPDITGKNIANPIAQILSLALLLRYSLDADDAACAIERAINRALEEGI
                     RTGDLARGAAAVSTDEMGDIIARYVAEGV"
     gene            36386..37786
                     /gene="leuC"
                     /locus_tag="JN125_000125"
     CDS             36386..37786
                     /gene="leuC"
                     /locus_tag="JN125_000125"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HAY8870031.1"
                     /translation="MAKTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGL
                     RAHGRPVRQPGKTFATMDHNVSTQTKDINACGEMARIQMQELIKNCKEFGVELYDLNH
                     PYQGIVHVMGPEQGVTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQ
                     GRAKTMKIEVQGKAAPGITAKDIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMT
                     LCNMAIEMGAKAGLVAPDETTFNYVKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTV
                     VTLQAEEISPQVTWGTNPGQVISVNDNIPDPASFADPVERASAEKALAYMGLKPGIPL
                     TEVAIDKVFIGSCTNSRIEDLRAAAEIAKGRKVAPGVQALVVPGSGPVKAQAEAEGLD
                     KIFIEAGFEWRLPGCSMCLAMNNDRLNPGERCASTSNRNFEGRQGRGGRTHLVSPAMA
                     AAAAVTGHFADIRNIK"
     gene            37797..38402
                     /gene="leuD"
                     /locus_tag="JN125_000126"
     CDS             37797..38402
                     /gene="leuD"
                     /locus_tag="JN125_000126"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HAY8870032.1"
                     /translation="MAEKFIKHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLF
                     NDWRFLDEKGQQPNPDFVLNFPQYQGASILLARENFGCGSSREHAPWALTDYGFKVVI
                     APSFADIFYGNSFNNQLLPVKLSDAEVDELFALVKANPGIHFDVDLEAQEVKAGEKTY
                     RFTIDAFRRHCMMNGLDSIGLTLQHDDAIAAYEAKQPAFMN"
     gene            complement(38451..39533)
                     /locus_tag="JN125_000127"
     CDS             complement(38451..39533)
                     /locus_tag="JN125_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8870033.1"
                     /translation="MIWIMTMARRMNGVYAAFMLVAFMMGVAGALQAPTLSLFLSREV
                     GAQPFWIGLFYTVNTIAGIGVSLWLAKRSDSQGDRRKLIIFCCLMAIGNAPLFAFNRH
                     YLTLITCGVLLASLANTAMPQLFALAREYADNSAREVVMFSIAAGIFTLSLVLIAFML
                     PSVARVELPSENALSMQGGWQDSNVRMLFVASTLMWTCNTMYIIDMPLWISSELGLPD
                     KLAGFLMGTAAGLEIPAMILAGYYVKRYGKRRMMVIAVAAGVLFYTGLIFFHSRMALM
                     TLQLFNAVFIGIVAGIGMLWFQELMPGRAGAATTLFTNSISTGVILAGVIQGAIAQSW
                     GHFAVYWVIAVISVVALFLTAKVKDV"
     gene            complement(39635..39766)
                     /gene="sgrT"
                     /locus_tag="JN125_000128"
     CDS             complement(39635..39766)
                     /gene="sgrT"
                     /locus_tag="JN125_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose uptake inhibitor SgrT"
                     /protein_id="HAY8870034.1"
                     /translation="MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEGLMQWDDRNSES"
     gene            39855..41510
                     /locus_tag="JN125_000129"
     CDS             39855..41510
                     /locus_tag="JN125_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator SgrR"
                     /protein_id="HAY8870035.1"
                     /translation="MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLL
                     NTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKAT
                     VRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEE
                     NGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIA
                     DIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRN
                     TTNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEG
                     CYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHART
                     IKSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLEIKEISYDQWHEGEIES
                     DIWLNSANFTLPLDFSLFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQQLVA
                     SKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP"
     regulatory      41544..41643
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            41674..42657
                     /gene="thiB"
                     /locus_tag="JN125_000130"
     CDS             41674..42657
                     /gene="thiB"
                     /locus_tag="JN125_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706021.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter substrate binding
                     subunit"
                     /protein_id="HAY8870036.1"
                     /translation="MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPKIKKAF
                     EADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVA
                     ADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRT
                     STPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTS
                     PAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIP
                     TGNWMYPVANVTLPAGFEQLTKPATTLEFTPAEVAAQRQAWISGWQRAVSR"
     gene            42633..44243
                     /gene="thiP"
                     /locus_tag="JN125_000131"
     CDS             42633..44243
                     /gene="thiP"
                     /locus_tag="JN125_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine/thiamine pyrophosphate ABC transporter
                     permease ThiP"
                     /protein_id="HAY8870037.1"
                     /translation="MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGNWV
                     AVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLIL
                     PVLVAVFGILSVYGRQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQ
                     ALENIPDEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLG
                     GGPQATTIELAIYQALSYDYDPARAAMLALIQMVCCLGLVLLSQRLSKAIAPGTTLLQ
                     GWRDPDDRLHSRICDTVLIVLALLLLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTS
                     LRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQALEMSGMLILAMPGIVLATGFFL
                     LLNNTIGLQQSADGIVIFTNALMAIPYALKVLENPMRDITARYSMLCQSLGIEGWSRL
                     KVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDDFRTLPFYLYQQIGSYRSQDGA
                     VTALILLLLCFLLFTVIEKLPGRNVKTD"
     gene            44227..44925
                     /gene="thiQ"
                     /locus_tag="JN125_000132"
     CDS             44227..44925
                     /gene="thiQ"
                     /locus_tag="JN125_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706019.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine ABC transporter ATP-binding protein
                     ThiQ"
                     /protein_id="HAY8870038.1"
                     /translation="MLKLTDITWLYQHLPMRFSLTVERGEQVAILGPSGAGKSTLLNL
                     IAGFLTPASGSLTIDGVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKL
                     NAAQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSAL
                     DPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGKTEELL
                     SGKASASAILGITG"
     gene            complement(45039..45803)
                     /locus_tag="JN125_000133"
     CDS             complement(45039..45803)
                     /locus_tag="JN125_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HAY8870039.1"
                     /translation="MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAG
                     LGALIGSGELSFWHAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTE
                     HALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGI
                     LAGAAIDIPAGMQSGEFKWLLLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLL
                     WLTPLISAIGVVALVVLIRQPLMPVYIDILRKVVGV"
     gene            complement(45889..46767)
                     /gene="araC"
                     /locus_tag="JN125_000134"
     CDS             complement(45889..46767)
                     /gene="araC"
                     /locus_tag="JN125_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose operon transcriptional regulator AraC"
                     /protein_id="HAY8870040.1"
                     /translation="MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKG
                     YILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRA
                     YWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLL
                     LRRMEAINESLHPPMDNRVREACQYISDHLADSDFDIASVAQHVCLSPSRLSHLFRQQ
                     LGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEF
                     RAGCEEKVNDVAVKLS"
     gene            47106..48806
                     /gene="araB"
                     /locus_tag="JN125_000135"
     CDS             47106..48806
                     /gene="araB"
                     /locus_tag="JN125_000135"
                     /EC_number="2.7.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulokinase"
                     /protein_id="HAY8870041.1"
                     /translation="MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCD
                     APNNQFRHHPRDYIESMEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVL
                     ALRPEFAEKPNAMFVLWKDHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKI
                     LHVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLP
                     PASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCH
                     MGAVGAGAQPNALVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAG
                     QSAFGDIYAWFGRVLGWPLEQLAAQHPELKAQINASQKQLLPALTEAWAKNPSLDHLP
                     VVLDWFNGRRTPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGI
                     AVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIP
                     SAQQKMASAVEKTLQPRSEQAQRFEQLYRRYQQWAMSAEQHYLPTSAPAQAAQAVPTL
                     "
     gene            48817..50319
                     /gene="araA"
                     /locus_tag="JN125_000136"
     CDS             48817..50319
                     /gene="araA"
                     /locus_tag="JN125_000136"
                     /EC_number="5.3.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose isomerase"
                     /protein_id="HAY8870042.1"
                     /translation="MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVNALNTEAKL
                     PCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQ
                     FHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERI
                     GSWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVV
                     NSISDGDVNALVDEYESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFT
                     TTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMED
                     YTYHFEKGNDLVLGSHMLEVCPSIAVEEKPILDVQHLGIGGKDDPARLIFNTQTGPAI
                     VASLIDLGDRYRLLVNCIDTVKTPHSLLKLPVANALWKAQPDLPTASEAWILAGGAHH
                     TVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGFRR"
     gene            50519..51214
                     /gene="araD"
                     /locus_tag="JN125_000137"
     CDS             50519..51214
                     /gene="araD"
                     /locus_tag="JN125_000137"
                     /EC_number="5.1.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase"
                     /protein_id="HAY8870043.1"
                     /translation="MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPS
                     GVDYSVMTADDMVVVSIETGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHAT
                     IWAQSGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDA
                     AQMPGVLVHSHGPFAWGKNAEDAVYNAIVLEEVAYMEIFCRQLAPQLPDMQQTLLDKH
                     YLRKHGAKAYYGQ"
     gene            51289..53640
                     /gene="polB"
                     /locus_tag="JN125_000138"
     CDS             51289..53640
                     /gene="polB"
                     /locus_tag="JN125_000138"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase II"
                     /protein_id="HAY8870044.1"
                     /translation="MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAF
                     IPADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVT
                     VYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETT
                     RHGELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVASRPQLLEKLNAWFANYDPD
                     VIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIID
                     GIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLK
                     DCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLG
                     EVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHS
                     TEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTAC
                     RFFDPRLASSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIG
                     RALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLIPTIRGADTGSKKRYAGLIQEG
                     DKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRETIDKLMAGELDARL
                     VYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPL
                     DYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF"
     gene            53804..56710
                     /gene="rapA"
                     /locus_tag="JN125_000139"
     CDS             53804..56710
                     /gene="rapA"
                     /locus_tag="JN125_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001117023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-associated protein RapA"
                     /protein_id="HAY8870045.1"
                     /translation="MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYA
                     RSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFL
                     DSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLN
                     IAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVE
                     MLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDL
                     LVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPN
                     RFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSD
                     SEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKV
                     SGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLV
                     ICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIG
                     SEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRW
                     YHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLE
                     QGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLLDIIGINQDDRGDNMIVL
                     TPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGS
                     STISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQV
                     EFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKL
                     SAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRLIVVTHQ"
     gene            56722..57381
                     /gene="rluA"
                     /locus_tag="JN125_000140"
     CDS             56722..57381
                     /gene="rluA"
                     /locus_tag="JN125_000140"
                     /EC_number="5.4.99.28"
                     /EC_number="5.4.99.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA pseudouridine(32) synthase/23S
                     rRNA pseudouridine(746) synthase RluA"
                     /protein_id="HAY8870046.1"
                     /translation="MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKD
                     SVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWG
                     HPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGR
                     SHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPAD
                     F"
     gene            complement(57498..58313)
                     /gene="djlA"
                     /locus_tag="JN125_000141"
     CDS             complement(57498..58313)
                     /gene="djlA"
                     /locus_tag="JN125_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone DjlA"
                     /protein_id="HAY8870047.1"
                     /translation="MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWF
                     ANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDLMNLHGASRTAAQNAFR
                     VGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERSVLYVIAEE
                     LGISRAQFDQFLRMMQGGAQFGGGYQQQSGGGNWQQAQRGPTLEDACNVLGVKPTDDA
                     TTIKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK"
     gene            58568..60922
                     /gene="lptD"
                     /locus_tag="JN125_000142"
     CDS             58568..60922
                     /gene="lptD"
                     /locus_tag="JN125_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly protein LptD"
                     /protein_id="HAY8870048.1"
                     /translation="MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQ
                     GDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVPLHQKEAPGQPEPVR
                     TVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGEN
                     RYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQL
                     PVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEF
                     RYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWQHSGVMDQVWRFNVDYTKV
                     SDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEP
                     QLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTE
                     AKLLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTL
                     EPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRI
                     YDDAAVEHFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRG
                     GIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYASPEYIQATLPKYYSTAEQYKNGI
                     SQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWD
                     NDKQHAVYDNAIGFNIELRGLSSNYGLDTQEMLRSNILPYQNTL"
     gene            60975..62261
                     /gene="surA"
                     /locus_tag="JN125_000143"
     CDS             60975..62261
                     /gene="surA"
                     /locus_tag="JN125_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase SurA"
                     /protein_id="HAY8870049.1"
                     /translation="MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDG
                     LMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIAN
                     IAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESL
                     AQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQVRNGADFGKLAIA
                     HSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGE
                     SKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPDS
                     ANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAA
                     QKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN"
     gene            62261..63250
                     /gene="pdxA"
                     /locus_tag="JN125_000144"
     CDS             62261..63250
                     /gene="pdxA"
                     /locus_tag="JN125_000144"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase
                     PdxA"
                     /protein_id="HAY8870050.1"
                     /translation="MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLT
                     DRAAMLGLPLTLRPYSPNSPAQPQTAGTLTLLPVALRESVTAGQLAIENGHYVVETLA
                     RACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRV
                     ALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHM
                     GTEEIDTIIPVLDELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQ
                     GFGRGVNITLGLPFIRTSVDHGTALELAGRGEADVGSFITALNLAIKMIVNTQ"
     gene            63247..64068
                     /gene="rsmA"
                     /locus_tag="JN125_000145"
     CDS             63247..64068
                     /gene="rsmA"
                     /locus_tag="JN125_000145"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HAY8870051.1"
                     /translation="MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEI
                     GPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE
                     KMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRL
                     SVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAF
                     NQRRKTIRNSLGNLFSVEVLTGMGLDPAMRAENISVAQYCQMANYLAENAPLQES"
     gene            64071..64448
                     /gene="apaG"
                     /locus_tag="JN125_000146"
     CDS             64071..64448
                     /gene="apaG"
                     /locus_tag="JN125_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Co2+/Mg2+ efflux protein ApaG"
                     /protein_id="HAY8870052.1"
                     /translation="MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQ
                     LLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMI
                     DENGVPFSIDIPVFRLAVPTLIH"
     gene            64455..65297
                     /gene="apaH"
                     /locus_tag="JN125_000147"
     CDS             64455..65297
                     /gene="apaH"
                     /locus_tag="JN125_000147"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bis(5'-nucleosyl)-tetraphosphatase
                     (symmetrical)"
                     /protein_id="HAY8870053.1"
                     /translation="MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPG
                     SLDVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWL
                     RRQPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMP
                     NNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVA
                     EEYSIAFGHWASLEGKGTPEGIYALDTGCCWGGTLTCLRWEDKQYFVQPSNRHKDLGE
                     AAAS"
     gene            complement(65375..65854)
                     /gene="folA"
                     /locus_tag="JN125_000148"
     CDS             complement(65375..65854)
                     /gene="folA"
                     /locus_tag="JN125_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020456510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 dihydrofolate reductase"
                     /protein_id="HAY8870054.1"
                     /translation="MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGR
                     HTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQ
                     FLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR"
     gene            complement(66046..67908)
                     /gene="kefC"
                     /locus_tag="JN125_000149"
     CDS             complement(66046..67908)
                     /gene="kefC"
                     /locus_tag="JN125_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     protein KefC"
                     /protein_id="HAY8870055.1"
                     /translation="MDSHTLIQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPW
                     GLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICGGLLG
                     LFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAI
                     PLVAMIPLLATSSASTTMGAFALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREV
                     FSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLF
                     FIGVGMSIDFGTLLENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQ
                     GSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREA
                     DEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDA
                     TRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQ
                     AGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTK
                     ARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS"
     gene            complement(67901..68431)
                     /gene="kefF"
                     /locus_tag="JN125_000150"
     CDS             complement(67901..68431)
                     /gene="kefF"
                     /locus_tag="JN125_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     oxidoreductase KefF"
                     /protein_id="HAY8870056.1"
                     /translation="MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNI
                     DIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVLSHGWAYGHGGKALHGKHLLW
                     AVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQA
                     RHYKQRLLEWQEAHHG"
     gene            complement(68513..>69786)
                     /locus_tag="JN125_000151"
     CDS             complement(68513..>69786)
                     /locus_tag="JN125_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005116114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8870057.1"
                     /translation="DGYVLVMIGVALEQLTPALKLDADWIGLLGAGTLAGLFVGTSLF
                     GYISDKVGRRKMFLIDIIAIGVISVATMFVSSPVELLVMRVLIGIVIGADYPIATSMI
                     TEFSSTRQRAFSISFIAAMWYVGVTCADLVGYWLYDVEGGWRWMLGSAAIPCLLILIG
                     RFELPESPRWLLRKGRVKECEEMMIKLFGEPVAFDEEQPQQTRFRDLFNRRHFPFVLF
                     VAAIWTCQVIPMFAIYTFGPQIVGLLGLGVGKNAALGNVVISLFFMLGCIPPMLWLNT
                     AGRRPLLIGSFAMMTLALAVLGLIPDMGIWLVVMAFAVYAFFSGGPGNLQWLYPNELF
                     PTDIRASAVGVIMSLSRIGTIVSTWALPIFINNYGISNTMLMGAGISLFGLLISVAFA
                     PETSRDVTGANQQYDDPRAENGVNCSDFSLF"
BASE COUNT        16870 a        19333 c        17708 g        15875 t
ORIGIN      
        1 gtggattaga tacctgcgac ggtggcagca atggcattcc ctcgcctacc accacccgct
       61 atgtttcagc catgagtgtg gcaaaaggcg tggtgtcgct gaccgggcaa gaaagtctca
      121 atggactaag cgtcgtcatg acgccaggtt gggataacgc aaacggcgtc accggctggg
      181 cgcgcaactg caatattcaa agtgacagcg cattgcagca agcctgcgaa gatgtcttcc
      241 gctttgatga cgccaactaa ggagcggcaa tgaatattcc acagctcacc gccctgtgtc
      301 tgcgttatca gggagtcttg ctggatgcca gcgaagaggt ggttcatgtt gcggtagtcg
      361 atgcaccttc gcatgagttg ctggacgcat tgcatttcgc taccaccaaa cgtattgaga
      421 tcacctgctg gacgcgccaa caaatggaag gccacgccag tcgcacacaa cagacattgc
      481 ccgtagctgt tcaggagaag catcagtcga aagcagagtt gctgactcga acgttacaat
      541 ctgcgctgga acaacgtgcg tctgatattc atatcgaacc agcggacaat gcctaccgca
      601 tccgcttgcg tatcgacggc gtattgcatc ctttaccgga tgtttcaccg gatgccggag
      661 tcgcattaac cgccagatta aaagtgctgg gaaacctgga tattgcggaa catcgcctgc
      721 cgcaggacgg gcaattcact gtcgaactgg caggaaacgc cgtctcattt cgtattgcga
      781 ccttaccatg tcggggtggt gaaaaggtag tattaaggtt gttacagcag gtgaaccagg
      841 cactggatgt taacacgctg ggaatgcagc cgttacaact ggcggacttt gctcatgcct
      901 tgcaacaacc acagggactg gtgctggtaa ctggccctac aggcagcggc aaaacggtca
      961 cgctttatag tgccctgcaa aagctgaata ccgctgacat taatatttgt agcgtcgaag
     1021 atccggttga gatccccata gccggactaa accagacgca aatccatccg cgtgccgggc
     1081 tcacctttca gggcgttttg cgtgcgttat tgcgccagga tcctgacgtc atcatgatcc
     1141 gatggcgaaa cggcagaaat tgccattaaa gccgcgcaaa ccggtcacct ggtgttgtct
     1201 accctacaca ctaattccac ctgcgaaacg ctggtacgtt tacagcaaat gggagtcgcc
     1261 cgctggatgc tctcatcagc gcttacgctg gtaatagccc agcgtctggt acgtaaattt
     1321 tgcccacatt gtcgccagca gcaaggggag cccatccata ttccagacaa tgtatggccg
     1381 tcgccgctgc cccactggca ggcacccggt tgtgtacatt gctaccacgg tttttatggt
     1441 cgtaccgcct tgtttgaagt cctgcccatt acaccagcca tacgccagct tatttccgct
     1501 aataccgacg ttgaatcgct ggaaacgcac gcacgacagg cgggtatgcg tacgcttttt
     1561 gaaaacggct gcctagccgt ggagcaaggc ttaaccacct ttgaagagtt aatccgcgta
     1621 ctggggatgc cgcatggcga gtaagcaact ctggcgctgg catggcataa ccggcgacgg
     1681 caatgcgcaa gatgggatgc tatgggcaga gagccgtgct ttgctgctca tggcactaca
     1741 gcaacagatg gttaccccac ttagcctgaa gcgaatcgcc atcaattctg cgcagtggcg
     1801 aggagataaa agcgcggaag tcattcatca actggcgacg ctactcaaag ccgggttaac
     1861 gctttctgaa gggctggcac tgctggcgga acagcatccc agtaagcaat ggcaagcgtt
     1921 gctgcaatcg ctggcgcacg atctcgaaca gggcattgct ttttccaatg ccttattacc
     1981 ctggtcagag gtatttccgc cactctatca ggcgatgatc cgcacgggtg aactgaccgg
     2041 taagctggat gaatgctgct ttgaactggc gcgtcagcaa aaagcccagc gtcagttgac
     2101 cgacaaagtg aaatcagcgt tacgttatcc catcatcatt ttagcgatgg caatcatggt
     2161 ggttgtggca atgctgcatt ttgttctgcc ggagtttgcc gctatctata agaccttcaa
     2221 caccccacta ccggcactaa cgcaggggat catgacgctg gcagacttta gtggcgaatg
     2281 gagctggctg ctggtgttgt tcggctttct gctggcgata gccaataagt tgctgatgcg
     2341 ccgaccgact tggcttatag tgcggcagaa attgctgtta cgcatcccga ttatgggttc
     2401 actgatgcgg ggacaaaaac tcacgcagat ctttacgatt ctggcgctga cacaaagtgc
     2461 aggcattact tttttgcagg gcgtagagag cgtcagagaa acaatgcgct gcccgtactg
     2521 ggtgcaactt ctgacacaaa tccagcacga tatcagtaac ggtcatccca tctggctggc
     2581 gctaaaaaat accggggagt ttagcccgct ctgtttgcaa ttagtgagaa caggagaggc
     2641 atccggctcg ctggacctca tgttagacaa cctcgcccat catcatcggg ataacacaat
     2701 ggcgctggcg gataacctcg cagccttact ggaaccggcg ttgctgatca taacgggagg
     2761 aattatcggt acgctggtgg tggcgatgta tctgccaatt ttccatttag gcgatgcgat
     2821 gagtgggatg ggataacgct ggcgtgttgc tccacaccag cgttggaaga ttacaggttg
     2881 ttgaagatgc ggttttcttg ttcctgcaca cggataaatg tggtgcgctt ggtcagttct
     2941 ttcaggcgtg aagccccaac gtatgtacaa gctgaacgca ggccgcccaa aatatcacgc
     3001 gcggtatttt caaccgggcc tcgcagcggc agcttaacgg ttttaccttc tgctgcgcga
     3061 tattccgcaa cgccgccaac gtgacgtttc atcgcagact cggagctcat gccgtagaac
     3121 agcataaatt tctcgccgtt ctcctcaacg atgcgaccgc cgctctcttc gtggcccgcc
     3181 agcatgccgc caagcatgac gaaatcggca ccgccgccaa aggcttttgc gacatcgccc
     3241 ggcgtggtgc agccaccgtc gctgacgatc attccgccca gaccgtgcgc cgcatcggca
     3301 cattcgatta ccgcagaaag ctgcggataa ccgacgcctg ttttgacgcg agttgtacaa
     3361 acagaacctg ggccaatgcc aactttaacg atatcagcac cggagaggat aagctcctca
     3421 cacatttcac cagtcactac gttgccagca caaatggttt tggtcggcca cgcttcacgc
     3481 gctttcgcaa cgaactgcac gaagtgttcg gaataaccat tcgccacatc aatacaaaca
     3541 aagtttaatg ccgggttcag gtcgagaatc tgtttagttt tttcgaaatc cgcatcagac
     3601 gtaccggtag aaaccatcac atgtttcagc acatcagcgg aagaattgtt gataaacgct
     3661 tgccactctt cgacagaata gtgtttatgc acagcagtca aaatatcaaa agaagccagc
     3721 gcagaggcca tagaaaatgt acctacggtg tccatatttg cggcgataat cggcacgccg
     3781 gaccagctct gatctgaatg tttgaaggtg aattgacgtt ccagttcaac atcggaacgg
     3841 cttttaagag tggagcgttt agggcggatg agaacgtctt taaaacctaa cttcagatct
     3901 tcttcaatac gcatgtgcgg attcctgggg ttaatggcta taagggtaag agcgcaactc
     3961 cagtgacgct atcatacgca ctaatcaatg cggcgcaaga ctgcgaaatt gtcttttttt
     4021 acgctacaat cccataaatt tacctggtaa atagtgagcg aacgtttcat caatttcgct
     4081 ttcgtgcact catttttaac gttttgataa tcatgatgaa ttcccgggaa tataaattat
     4141 gaggtatata gttgccttaa cgggaggcat tggcagtggc aagagtaccg ttgccaatgc
     4201 gtttgctgat ctcggaatta acgtcattga tgccgatatt attgcgcgtc aggtggttga
     4261 accaggtgca cctgcgctac atgccattgc tgatcacttt ggcgctaaca tgattgctgc
     4321 tgatggaaca ttgcagcgcc gggccttgcg cgagcggatc ttcgccaacc cggaagagaa
     4381 aaactggctt aacgccctgc tgcatccgct gattcagcaa gagacgcaac accagatcca
     4441 gcaagctact tccccctatg tactgtgggt tgtgccattg ctggtagaaa actcactgta
     4501 taaaaaagcg aatcgagtgc tggtggtgga tgtcagccca gaaacgcaac ttaagcgcac
     4561 catgcagcgc gatgatgtaa ctcgcgagca tgtcgaacaa atccttgctg ctcaggcaac
     4621 gcgcgaagcc cgccttgccg tggcagatga cgtcattgat aataacggcg caccggatgc
     4681 tatcgcatcg gatgttgccc gcctgcacgc acactatttg cagcttgcgt cgcagtttgt
     4741 ctcacaggaa aaaccgtaat gcagacccag gtcctttttg aacatccact aaatgaaaaa
     4801 atgcgtacat ggctgcgcat tgagtttttg attcagcaac tcaccgttaa tttacccatc
     4861 gttgaccacg ctggcgcgct gcatttcttc cgtaatgtca gtgaattact ggatgttttc
     4921 gagcgcggcg aagtccgcac tgagctgttg aaagaacttg accggcagca acgtaaactc
     4981 cagacctgga ttggcgtgcc tggcgtggac cagagccgta ttgaagcatt aattcagcag
     5041 ttaaaagcgg cggggagcgt attaatttcc gcgccgcgta tcgggcaatt tctgcgtgaa
     5101 gatcgtttga ttgctctggt gcgtcagcga ctgagcatcc caggcggctg ttgcagcttt
     5161 gatttaccta cattgcacat ttggctgcat ctaccccagg cgcagcgcga cagccaggta
     5221 gaaacctgga ttgccagcct gaacccgctc acccaggcac ttaccatggt gctggattta
     5281 attcgccagt cggccccctt ccgtaaacaa accagcctga atggttttta tcaggataac
     5341 ggtggcgatg ccgacttgct gcgcctgaat ctgtcgctcg attcacagct ttatccgcaa
     5401 atttccggac ataagagccg ttttgccatt cgttttatgc cgctggacag tgaaaacgga
     5461 caggtaccgg aacgtctaga tttcgaactg gcctgttgct aaggagtgaa aatgtcagaa
     5521 actattacgg tgaattgccc aacctgcggg aaaacggtgg tgtggggtga aatcagcccg
     5581 tttcggccat tttgctccaa acgttgtcag ctgatcgacc tcggagaatg ggctgctgaa
     5641 gaaaaacgaa tccccagcag tggcgatctt tccgaaagcg atgactggag cgaagagcca
     5701 aagcagtgac attggtctga tgccgcacat aggcctgata agacgcggac agcgtcgcat
     5761 caggcatctt gtgcaaatgt cggatgcggc gtgaacgcct tatccgacct acagactaca
     5821 gacgcttaag cttcgcaatt accggttcat tggctggcgg aaaatcatcg gcattaagac
     5881 cgaccagcga catccactca ccgggttgcc cttctttacc ccacggcacc ccttcccaac
     5941 tttcgaccag ccagaaccac agagttatat gcctgtccgg gaattcatat gccagttttt
     6001 caaatagcga aaaatgttgt ggggtaatcc cgacctcttc ctgaagttca cgcaccaccg
     6061 cctgttccgg cgtttcgccc atttcaattt taccgccggg aaactccagt ttattcgcca
     6121 tgtgcgcatc tgctgcgcga cgcgttataa agatttcatt gttctcgttg cgaataatac
     6181 ctaccgcaat ttgcagcttt ttcattgttt taaacctata aaaaaggcgc agaatcctgc
     6241 gccttttgct tcaacagtta gcttttattg caggcggcca tgacactgct tgtatttttt
     6301 accagaaccg cacgggcaag gatcgttacg tcctactttg cgctcaccgg tttgcgccgc
     6361 caatgcagct gcggctgcag agtcgtcatc ctgatggcta agctgctgca tttgcgctaa
     6421 acgctcggct tccatacgac gctgttgttc cagctcctca acctcttcag gcatacgtac
     6481 ctgaactttg ctcagcgtac tgataacttc atatttcaac gactccagca tcgctgcaaa
     6541 catggagaac gattcacgtt tgtattcctg cttcggatct ttctgtgcat agccacgcag
     6601 gtggataccc tgacgcagat agtccatcgc tgccaggtgc tctttccaca gggagtcaag
     6661 cgtttgcagc atgacgcctt tctcgaagtg acgcatcatc tcagcaccaa ccacttcttc
     6721 tttacgctga tacacttcga tggactgcgc cagaatgcgc tcacgcagcg tctcttcatg
     6781 cagttctggt tctttatcca gccactcggc aattggtaaa tcgaggtcga aatcgttctt
     6841 cagacgttcc tgcagccccg gaatatccca catttcttcc agcgactgtg gcggaatgta
     6901 ggcatcaatg gtggctttga acacatcttc acgaatgctg ttgatggttt cgctcacatc
     6961 gctgacatcc agcagttcat tacgctggga gtaaatggcg cgacgctgat cgttagccac
     7021 gtcatcatat tccagcagtt gcttacgaat gtcgaagtta cgactttcaa ctttacgctg
     7081 ggcgttggca atcgctttag tcacccacgg gtgttcaatg gcttcgcctg gcttcatacc
     7141 cagtttacgc atcatgccgg atactcggtc ggaagcaaaa atacgcatca gcgcatcttc
     7201 catcgacagg tagaaacggg aagaaccagc atccccctga cgaccagaac gaccgcgcaa
     7261 ctggttatcg atacgacggg attcgtgacg ctcggtaccg atgatatgca ggccacctgc
     7321 ttccagtacc gcatcgtgac gtacctgcca gtcggcttta attttttcaa tttgctctgc
     7381 ggtcggattt tccagcgcgg caacttctgc ctgccagcta ccaccgagca caatatctgt
     7441 accacgaccc gccatattgg tcgcgatagt caccgcagcc ggataacctg cctgagcaac
     7501 aatcgccgct tcgttggcgt ggaatttggc gttcaggacg ttgtgcttaa taccggcttt
     7561 ggtcagttcg tttgacacca gctccgattt ttcgatggag atagtaccca ccagcaccgg
     7621 ctggcctttc gcagtacgtt ctttgatatc ttcaatgatc gcctgaattt tttccgcttc
     7681 agtcatgtag accaggtccg gcagatcttt acgaatcatt ggacggttgg tcggaacaac
     7741 gacggtatcc agcttgtaga tggagctaaa ttcgaaagct tcggtatcag cagtaccggt
     7801 catccccgcc agtttttcat acagacggaa gtagttctgg aaggtgatcg aagccagcgt
     7861 ttggttttcg ttctggatct gcacaccttc tttcgcttcc acagcctggt gcagaccatc
     7921 ggaccagcga cggccctgca tggtacgacc ggtgtgttcg tcaacgatga taacttcacc
     7981 atctttaacg atgtagtcga cgtcgcgggt aaacagcgca tgagcgcgca gcgccgccgt
     8041 tacgtggtgc atcagcatga tgttggccgg agagtacaga gactcccctt catccatgat
     8101 gccctctttc accagcagtt cttcaatcag caccagacca cgttcggtca ggttcacctg
     8161 gcgagatttt tcgtccaccg agaagtggcc ttcgccctgg aaggtttcgg agtcttcttt
     8221 ttcctgacgg atcaggtgcg gaataatttt attcacgcgt ttatacattt ccgagctgtc
     8281 ttctgccggg ccggaaatga tcagcggtgt acgcgcttca tcgatcagga tggagtccac
     8341 ttcgtccacc agcgcatagt gcagtttacg ctgtacacgt tcttcagggc tgaacgccat
     8401 attgtcgcgc aggtagtcaa agccgtattc gttgttcgta ccgtaagtga tgtcagctgc
     8461 gtaagcttcg cgctttgccg gtgctggcat gcccggcagg ttgataccga cagtcaggcc
     8521 aaggaattca aacagcggac ggttgttttc ggcgtcacgt tgcgccaggt agtcgttgac
     8581 ggtaactacg tgcacgcctt taccggttag tgcgttcagg taagcaggca gcgttgcggt
     8641 cagggtttta ccttcaccgg tacgcatttc ggcgatgcag cgttcgttaa gaaccatacc
     8701 gccgagtaac tgaacgtcga agtgacgcat accaaagacg cgcttacttg cctcacgtac
     8761 cacggcgaaa gcttccggga tcagattttc cagcacttcg cctttttcca gacgtgcacg
     8821 aaactctgcg gttttccctt tcagttcttc gtcggagagt ttttccatct ccggttccat
     8881 ggcattgatg atgttgacca ctttgcgcat ccggcgcagg gtgcgatcgt tacgactacc
     8941 gaaaacttta gttaacaatt tgattagcat aataaaatct caaacgcccc gcgttgcgga
     9001 gttaataaaa tgaagtaaag gtttattgtt gttaggtgag gcgttgaggg ccagcacgga
     9061 tgccttgcgc ctggcttatc cagacgggcg tgctgaattt tgcttgtggg gtaaaatgcg
     9121 cataatcaat gcgataaccc ttttcagacg gcgtgccttc ctgggtcagc agcgcgctga
     9181 gcgtatccag taatgcaaga tgttgcgcct gaagaggcaa agattcttca gcaacgggca
     9241 gtgtttgcgg tgccattgcg aaagaaagat gacggattac cgtgcgaatg gcatattgat
     9301 gccagtaatc aacggaatag ttcgaattcg ggcggcgtgt gttcgcttcc agcaaggcca
     9361 attgaccaaa gttaactttg gctgaaggct cgtggttgcg ggttgtcgct tttgcgggca
     9421 cgtttggttc ggcggcgttg ctgagcgcag gcaaaccgaa actcgccgcg accatcccta
     9481 ataagagatg cggccagaag tagcgtttac caaactgtcg ccagcgcgtc agtattccac
     9541 tcacgttatt gccatcccga tcgaattcaa acgtatttag cgcacaaatc ttatcattaa
     9601 agcctgaagt ccacagcatg aatgaagata agttgtgcgt aaaagtgctt aagaaaacag
     9661 cgttcgcacc gttttttata gctcttataa aattcaaaaa aaaacgactg gttcacctgg
     9721 ccggagagag tgccagattt gccagtcgaa ttttatacga cagtataaat gtcgttatgc
     9781 cagtacagct gaaggcgctt tgaaggccaa cggcagttct gcgtcgtcct ggaaggtcac
     9841 atattcccag gcttcctgtt tcgccaggac agcctgcagc agtttgttat tcagtgcatg
     9901 accggattta taagcgataa atgcaccaat aatattgtga ccacacatga acaagtcacc
     9961 gatcgcatcg agcattttgt gacgcacaaa ttcgtcttca aaacgcaggc cgtcttcgtt
    10021 cagtacgcga taatcgtcaa caacgatggc acaatcgaag ctgccgccca ggcacaaacc
    10081 acgggactgc agatattcga tatcacgcat gaaaccgaac gtacgcgcac ggctgatctg
    10141 gcgcataaac gcatcagcgg agaagttcat cgcatagcgc tggttgctgg aatcaatagc
    10201 cggatggtta aaatcgatgg tgaaatccag cgaaaaacca ttgtacggct taaattcagc
    10261 ccacttatcg ccatcttcga cacgaacagt ctctttgatg cgaacaaatt ttttggcgca
    10321 gttcaactcg tcgataccgg cgtcaagcag caggtataca aacggagcgg cgctgccgtc
    10381 catgatcggg atttccggcg cgttaacttc gataacaatg ttatcgatgc ccaggcccgc
    10441 gagagcagca ttgaggtgct ctacggttga aatccgtaca tcatgctcgt tgaccagaca
    10501 cgtacagagc atggtatcac gcacagattt ggcatcggcc gggaaatcta ccggtggatt
    10561 caagtcggtg cgacgataga tgaccccggt gttggccggc gcagggcgta acgtcagagt
    10621 gactttcttg ccggtatgta aaccgacacc cgtcgcctga acgatacgtt taagtgtcct
    10681 ttgtttgatc atcgtattat ctcgccaaat tacctatcca accgaagtgt actatacatt
    10741 cggcgggcca gtttagcaca aagagcctcg aaaccaaaat tccagtcaat tcttaatcag
    10801 cttgcttacg caggaatgct gggatatcca gataatccgg ctctttcgca gtttgcggcg
    10861 cattgtcatt cacgacttta gcaaccggct tctgctcctg ggtcagcgga gccatcccat
    10921 gctgctggta gcgatccatc actggctgct gaacctgctt attggtcacc agagtgattt
    10981 caggacgttt gtccatgccg atacctgtcg caacaacggt tacgcgcagc tcgtcattca
    11041 tatccgggtc aagagaagta ccgataacca cagtcgcgtt gtcggaagca aatgcacgga
    11101 tggtgttacc taccgtttcg aactcatcca gacgcaggtc gaagcccgcc gtgatgttaa
    11161 ccagcacgcc gcgcgcgcca gacaggtcga tatcttccag cagcggagaa gagatagcca
    11221 tttcagcagc ttcttccgca cggtcttcac cgctcgccac gccagaaccc atcattgcgt
    11281 agcccatctc agacattacg gtgcgtacgt ctgcaaagtc cacgttcatc aaacccggac
    11341 gagtaatcag ttcagcgata ccttgcacag cgcctttcag tacatcgttc gctgcgccaa
    11401 acgcatccag cagggagata ccgcggccca gaactttcag cagtttgtcg ttcgggatag
    11461 tgatcagaga gtccacatgc ttggacagtt cagtgatccc ctgctccgcg aatgccatac
    11521 gcttcttgcc ttcaaagttg aaaggcttag tgacgacagc aacggtcagg atacccaaat
    11581 cttttgccac ttcagcgacg actggtgctg cacctgtacc ggtaccacca cccatacccg
    11641 cagcaataaa gaccatgtct gcaccttcca gcgccgcacg caatgcatcg cgatcctcat
    11701 cagccgcatt gcggccaact tctggattag cgccagcgcc cagtcctttg gtgataccgc
    11761 taccgatttg aatcgtctgt ccaaccgctg ttttacgcag cgcttgtgca tcggtattta
    11821 ccgcgaagaa ttcaacacct tcaatgcgct cgcgcaccat gtgttcaaca gcattaccgc
    11881 cgccgccgcc gacgccgatg actttaatca ccgcgtcatt ggtaagttcc attggttcaa
    11941 acatagtttc tctccgattt gtgcctgtcg cctgaggccg taatcatcgt cggcctcata
    12001 aaaattaaaa ctcttttcgc agccaactat tgagtcgctt gatccacgag ccaactgatg
    12061 ctgtaacacg tttttctact tcagcttcac cgttaagatg tgactctttc ccatagtgaa
    12121 gcaatcccac cgccgtcgaa taatacggct cctgagcata atccgttaaa ccggtaatgt
    12181 tcagcggcgc gccgatacgc acttgcgtat gaaacacgcg ctgagcacag gctgcaagac
    12241 cttcgatctg cgctgcgcca ccggttaata caatgcctgc cgccaggtga tgtttaaccc
    12301 cttgttggcg aagcttttcc tgcaactgca atatctcttc gttgaccagg ttgagcagct
    12361 cggtatagcg cggctcgatc acctctgcca gggtctgacg ttgcagactc cgtggcggac
    12421 gaccgcctac gctcggcact tccacgctct catcttttcc aacgatggaa cccagcgcac
    12481 aaccgtggcg aactttaatc gcttcggcgt cgcttggcgg cgtgccaaag gcgtaagcga
    12541 tatcactggt cacgacattg ccagcataag gaattacctt agtgtggcgc aatgccccac
    12601 cggtataaac ggcgatatcc attgtaccac ctccgatatc gacgacgcag acacccagtt
    12661 cacgttcatc ttccgtcaat accgaataac ttgatgccag tccggcaaat atcagttggt
    12721 caactttcag cccacaacgt tcaaccgctt tgacgatgtt tttcgccata tcgttgtgac
    12781 atgtgatcag gtgcactttt gcctgcatcc gcacgcccga aagtcctacc ggattcttga
    12841 tcccttcctg atagtcaatc gcatactctt gcgggatcac atgcagcaca cgatgttcat
    12901 cgcgcacacg caccgatttc gcggtatgga cgacgttttc cacatcttct tgcgtcactt
    12961 cttcttcaga aataggcacc ataccaattt cattctggca gctgatgtgc ttaccagaaa
    13021 gcgccagata taccgaagag atctgacaat ctgccatcaa ttctgcctgg tcaatggcgc
    13081 gttgtacgca cttgaccacg gattcgaggt cgttcacccc gcctttatcc ataccacgtg
    13141 acgggcagct gcccacgcca atgatattga ccataccgtc gggcagaact tcccctacta
    13201 aagcggcaac cttcgcggta ccaatctcta gtcctactac cagttttctg tccgtcgcct
    13261 tgatcattgt tgttctgcct gtgcctgatt ttgttgctga gtagattcct ctggcggcaa
    13321 gggcgcccag cctactgccg ctccagagtc ataacgcaaa tcaacgtagc taatccgttt
    13381 gccatcggtt tgcgcctgct gctgtaaaac cggataaagt tctacaaagc gagccaaacg
    13441 tttcatcgta tcgccccggc caagattgag cttaatatcg ttattcagcg tcaactgcca
    13501 ggaacgccgc gcggtcatcg ccgcttcctt cagagtaaat ctgtcctttg ccagcatctg
    13561 ccccatttcg cgatagccct gcaacacttc attggcgctg ccttccgggc catacagcat
    13621 tggaagcacc tgcttgctgg tgcgatctgg cggcacgctg aaggtgtttc cttccgcgtc
    13681 taccatatgt tgatcattcc accgcgcaat cggcacatat tcaaccagat gaatcttcaa
    13741 ttcatcaggc cactgctttc tgacgctcac ctgcttaatc cacggcaggc gttgttctat
    13801 ttgcgtctgg atgatgttga catcctgggt cataaaggta cccggctcac ccaatgccag
    13861 gatcgactgc cggatatcgt cattacgcgt gtaatggcgt tcaccggtca acaccagctt
    13921 tgagagcggc aggcgttgcg catcttccat ccagcccaac acgacccagc cgctcaccaa
    13981 cactgtcgtt aaaacggtca gcaggaaaag gatccccgcc agacgcgttc cattattgcg
    14041 gcgagaagaa acctcttctt cgctgtttcg cgtgttcaga gcagcctgcg acatattagt
    14101 ccgccagttc cagaattcgt actaccaact gcgagaagct catacctgcc tgacgtgccg
    14161 ccatcggcac caggctgtgg ctggtcatac ccggtgaggt attggcttcc agcagataaa
    14221 actgtccatc gctgtccagc ataacgtcaa tacgtcccca tcctttgcaa cctaacgtcg
    14281 tccatgcttt cagcactaat gcctgcaaat tggcctcttg tgacgcatcc agacctgcgg
    14341 ggcagaaata ctgtgtctca tcagagagat acttcgcctc ataatcatag aaggttccgg
    14401 acggttgaat acgtattgac ggtaaaattt cttcaccgag tatcgcaacc gtgaactccg
    14461 gcccacttag ccatttttca atcaatactt cttcatcgtg ctgaaatgcc aatcttaatg
    14521 catcttgtag agcattttct gctactactt ttgacattcc cacactggaa ccttcgcggc
    14581 tcggcttaac gataaccggc aaacccagag cagaaatttc tgctaactgc ttatcgctca
    14641 ggcctttttc aaactctgcg cgggttaacg ctacccacgg cgcgaccggt aaaccggcac
    14701 cttgccacag cagtttgctg cgtagtttat ccattgaaag cgcagatgcc atcactccgc
    14761 tgccggtata aggcaagccc atcagctcga gcatgccctg cagcgtacca tcttcaccgc
    14821 cgcgaccgtg tagcgcgata aacactttct gaaaacccat cgacttcagt tgcgtcacgt
    14881 cgacttcttt cgggtcgaca ggatacgcat caataccacc ttcacgcagc ccggctaaca
    14941 ccgctgcgcc agaattcaga gaaacttccc gctcagcgga agtcccgccc aacaggaccg
    15001 cgattttatc agtcatgttg ttcttcctcc ggagtttgcg gcttcagttt gatttcagct
    15061 aaagaacggg caatttttcc gatattacca gccccctgaa cgagaatcag gtcgttaccg
    15121 gttaataccg gtgccagcat ctcggctacc tgcgcagggt ccggcaccag aatgggatca
    15181 attttcccac gtccacgaat tgtgcgacac agcgaacggc tgtccgctcc cggaattggc
    15241 gcttcgccag ccggatacac ttccagcatc aacagggtat caacctgtgt cagcacattg
    15301 gcgaaatcat catacaggtc gcgcgtacgg gtaaaacggt gcggctgaaa cagcattacc
    15361 aggtttttat ccggccagcc tgcgcgcgcc gctttaatgg tggcgtcaac ttccgtcggg
    15421 tggtggccgt agtcatcgac cagcattgcc gtaccgcttt taccattcac tggctccagc
    15481 gggaattcac cgaggaaatc aaaacggcga ccagtcccca ggaagctctc cagcgcacgc
    15541 aaaatagcct cgtcgtcaat tccctcttcc gtagcaaccg caaccgcagc tgcggcgttc
    15601 agcgcgttat gacggcctgg cgcattcagg gtgacgcgca tcggctcttt gtcctggcgc
    15661 agcagcgtaa agtgcccctg cgggccaatc tgctgataat cttctacacg cacgtcggca
    15721 tcttcgctga agccgtaagt cgtggtctga cgtcccacac gcggtaacaa ttcgcggatc
    15781 accggatcat caacacacat caccgcacga ccgtaaaacg gcaggttgtg cagaaaatta
    15841 ataaaagtct gttttaaatt ctcaaagtcg ccctggtagg tatccatgtg gtcggcttcg
    15901 atattggtga caatcgccac catcggttgc agatgcagga acgatgcatc actctcatct
    15961 gcttcggcaa tcaggtaccg accatgcccc aaacgcgcat gaacccccgc cgcttttacc
    16021 agcccgccgt taacgaaggt tgggtcgagc cccgcttctg cgtagatgct ggaaaccatc
    16081 gcggtggttg tcgttttgcc gtgcgttcct gcaatggcga tgccatgacg aaaacgcatt
    16141 aactcagcca gcatttcggc acgacggatc accggaatac gcgcttcatg agctgcgaca
    16201 atttccgggt tatcggcaga aatggcgctg gaaacaacga ccacgctggc atcacgtacg
    16261 ttttccgggc gatggttgaa ataaatcgtc gctcccagat tcattaactg ctgcgtgacc
    16321 ggatttggcg ctaaatcgga accactgatc tgataacctt cattggccag aacttcggca
    16381 ataccgccca taccggcacc accgatgccg acaaaatgta tgtgccgaac gcgacgcatt
    16441 tcgggcacga tggaacgcag ttttgccaat tgttgtgtat tcattcttta cgccattaac
    16501 ttcttaaatt catacgatgc aaaaggcatc gctacaatta cgcccgggca gcccggctca
    16561 cttcatttgc cactcgctcg gtggcatccg gaatggatgc agcgcgggcg cgttctgcca
    16621 tggttaataa ggtttctcgc gaccacccgg ccagggtgtt ggcgacagca tccacgctaa
    16681 gctgtggctg ctcgataatt ttggctgcgc ccgctttttc cagcggtagc gcattccagt
    16741 attgctggcg gtctttatgt tgaaacggca caaacaacgc cggtagtcct gccgcggcga
    16801 tttcactcac cgttaaagca ccggagcggc aaacgacgac atccgcccac gcatacgccg
    16861 ccgccatatc atcaataaat tccgtcactt tatgctgcgg ttgccccgct tcggcatacg
    16921 cctgttcaac ggattgttgc gaacctttac cgctctgatg ccagatagtg actgaatcac
    16981 ccagtttcgc agcaacctgc ggcattgtct ggttaagaat gcgtgcgccc tgggaaccac
    17041 ccactaccag cacacgaacc ggaccttcac gtccagccaa acgttgctgc ggcaacggca
    17101 gcgccagcac atcgatacgc accgggttac ccaccacttc cgcattaggg aaagcgcctg
    17161 gaaacgcctg catcactttg gtggcaatct tcgccagcca tttattggtt aagcccgcaa
    17221 taccgttttg ttcatgaagt acaaccggaa tgcctaacga ccacgcggcc agaccacctg
    17281 gacctgatac atagccgccc ataccgagta ccacgtcagg tttgtacgct ttcataatcg
    17341 cccgcgcctg acgccaggcg ttgaagatac gcagcggcgc agctatcagt gcttttatac
    17401 cttttccacg cagaccagag atacgaatga aatcaatttc gatgccatgt tttggcacta
    17461 agtccgcttc catacggtcg gcagtcccca gccagcgaac ttgccaaccc tgagccatta
    17521 gatggtgcgc aaccgccagt cccgggaata catgtccacc ggttccgcct gccatcacca
    17581 ttaatcgctt tccttgacca ctcatcgtga acctcgtaca aacgcctgcg ctttctccag
    17641 acgcgtttca taatcaatac gcaacagcat catgatggct gtcgacataa tcagtaagct
    17701 cgaaccaccg taactgatca gcggcaatgt cagacctttg gtcggtaaca tccccgccgc
    17761 cgcgcctacg ttaaccagcg cctggaagct aaaccagatg ccaatagaac aggcgagaaa
    17821 accggaaaaa cggtggtcaa tttctaacgc tttgcggcca atcgacatcg cgcgaaaagc
    17881 gacgaagaat accattaaaa gtgccagcac cacaccgaca taccccagtt cttcgccgat
    17941 aatggcgaaa ataaagtcag tgtgcgcttc cggcagatac tccagttttt gtaccgagtt
    18001 acctaaacct tgtccccaaa gttcgccgcg accaaacgcc atcagcgatt gcgttaactg
    18061 atagccgctg ccaaagggat cttcccacgg gttccagaat gcggtaacac ggcggatacg
    18121 gtacggttcg gcgagtatca gcaacacaac cgctgaaatg cccataccga taatggcaat
    18181 gaactgccac aatttcgctc ccgccaggaa caacatcgcc agcgtagtca caaacaccac
    18241 caccaccgta ccaaggtctg gctgtgccag cagtaacact gccaacacca gaatcacgcc
    18301 catcggtttc aggaagccgc gcaggttatt acgtacttcg tcgcctttac gcaccagata
    18361 gttggcgata taacaaaaca gcgacagttt tgtcagctcc gcaggctgga tacgcagcaa
    18421 accgagatcg atccaacgcg atgccccttt aaccgagcta cccactacca gcacgatcat
    18481 cagcaggatg atagatccga gcagcatcgt ggcactgtag cgttgccaga actccatcgg
    18541 cagacgcagc gtaatgatcg ccagaatgaa tgccaggatc agatagacgc catcacgctt
    18601 cgcgaagaag aacggatcgt tggttaagcg ttgccctatg ggcattgacg ccgaggtcac
    18661 catgataaag ccaatcgccg caaggccgaa ggtcagccac agtaaggtgc gatcgtacat
    18721 gatcaggctg tcggtatctt tttcccgcga gcccatcacc cagcctttta gcgccgtgga
    18781 gatccagacc aggatactga atcctggcag gcgcggcatt ttcaggcgag ggagagataa
    18841 acgcatcaac ctaactcctt cgccagacgg gcaaactcat tgcctcgttg ttcaaagttc
    18901 ttgaactgat caaggctggc acaggccggg gagagcagaa ccatatcgcc cggctgaaca
    18961 cgcggagcca gcaagcgcat cgcctgttcc atagtttcgg tttgttctgc cacttccggg
    19021 cgtagcgccg ccagctgcgc accgtcacga ccaaaacagt acaaacgcac gttgtcgcca
    19081 ttcagatagc gcgccagtgg actgaagtcc gccgatttac catcgccgcc cagcaacaaa
    19141 tgcagcgtgc cgtctacctg caagccattc aacgccgctt ccgtactgcc gacgttagtg
    19201 gctttcgaat cgttaatcca gcgtacgcca ttgtgctcca gcaccacttc aaagcgatgc
    19261 ggcagaccgg tgaaggtggt taacgctttc aggctgctgg cgcgcggcaa accagctgcg
    19321 tctgccagtg ccagtgctgc cagcgcattg gtgtagttat gctgcccaga aagtttcatc
    19381 tctttcacgt tcagcacttt ctcgcctttc actcgcagcc aggtttctcc ctgctgatga
    19441 ttcaggtgat agtcacccat gttgacgcca aagctgacgc agcgttcatc agcaccgcga
    19501 atcggcattg ttaaggcatc atcagcattg acgacacaaa ctttcgcatt ttcgtaaata
    19561 cgcaattttg ccgcacggta ttgctgcaaa ccaaacggat agcggtccat atgatcttca
    19621 gtcacgttca gaatggtcgc cgccaccgcc tgtaagctgg aagtggtttc cagctggaag
    19681 ctcgacagtt ccagcacgta cagttcgcac tcagcatcaa gcagcatcaa cgctggcagg
    19741 ccaatattgc cacccacacc aacgttaacc cccgccgctt tcgccatttc acccactagc
    19801 gtggtgaccg tgcttttgcc gttagaaccg gtaatcgcca caatcggtgc ttgtgcttcg
    19861 cggcagaaca gctcgatatc gccaacgatt tcgattccgg catcagcggc agcgcttaag
    19921 gatggatgcg cccgtgcaat accgggactg gcgacaatca gatctgccgc catcagccat
    19981 tcatcattca gactgcccgt gtggcgttct acggcttcgg gtaatttatc caggccaggc
    20041 ggtgtcatac gcgtatccat aacgcgcggc gtcacaccgc gagcgaggaa aaagtccacg
    20101 caggaaagcc cggtgaggcc caggccgata atgacgacat ttttaccctg ataatcagcc
    20161 atgattaacg taccttcagc gttgccagac caatcagaac cagcatcagc gaaataatcc
    20221 agaaacgcac aatgacgcgc ggttccggcc agcctttcag ttcatagtgg tgatgaatcg
    20281 gtgccatgcg gaaaatacgt tgtccgcgca gtttaaagga gccgacctgc aggatgacag
    20341 aaagcgtttc taccacgaac acgcccccca taatcaccag caggaattcc tgacgtagca
    20401 gtacggcgat aatgcctaac gcaccaccta acgccagcga acctacatcg cccataaaga
    20461 cctgcgccgg ataggtgtta aaccacagga agcccagtcc tgccccgact atcgcggtac
    20521 agacaataac cagttccccg gcgtgtcgca gatacggtat gtgtaaatag ctggcaaagt
    20581 tcatgttgcc ggtcgcccac gccaccagcg caaaaccacc ggcgacaaat acggtcggca
    20641 taattgccag gccgtcgaga ccatcggtca ggtttaccgc gttgccagta cccacaatga
    20701 cgaagtaagc cagcagaatg tagaacagcc ccaactgcgg catcacatct ttaaagaatg
    20761 ggaccaccag ctgcgttgcg ggcgtgtctt tgccggcaag gtacagggcg aaggcgacac
    20821 ccagcgcaat gaccgacatc cagaaatact tccaacgagc gatcaaccct ttggtgtctt
    20881 tacgcaccac tttgcgataa tcatcaacaa agccaataac accgtaacct accagcacca
    20941 ccaacacgca ccagacgtac ggattggacg ggtaagccca cagcagtacg gagatcacaa
    21001 tcgccgtcag gatcataatc ccgcccatgg tcggcgtacc gcgcttgctg aagtgtgatt
    21061 caggaccgtc gttacgcacc acctgaccaa aggaaagttt ttgcaaatga gcaatcatac
    21121 gcgggcccat ccacaatgag atgaacagcg cggtcagcag gctgacgatg gcgcgaaacg
    21181 tcagatagga aaagacgtta aagccggaat aatatttgac caaatgttcg gccagccaaa
    21241 ctaacatgtc ccattctcct gtaaagcgcg tactacctct tccatggcgg cactacgtga
    21301 acccttaact aaaatcgtaa ttacctgttg ctcagcaatc agtgatttaa gacgcgtaat
    21361 taacgcagtt ttatcagcaa aatgttcgcc aacgccgctg gcggtgctga tagcatggct
    21421 ttgtttaccc acgcttaaca cgcggtcaat accagcagct tttgccgcct cgcccacctg
    21481 tacatggcag gcttcgcttt cagcgcccag ttccgccata tcgcccacca ccagcacgcg
    21541 gtagcccggc atttcagcca gtacctgaac agcggcggtc attgaaccga cattggcgtt
    21601 gtaggagtcg tcgagcagca actggttttc tgccagttgg atggggaaca gacggcctgg
    21661 aacagctttc agatttgcca gccccgcttt gatagcatca agcgttgcgc ccacggacat
    21721 ggagagcgca gcggctgcca gcgcattcgc aatattgtga cgccccggca acggcagcag
    21781 aacatcgacg ctaccggttg gggtttgtag ggtaaattcc gtaccgtgcg aggtcacatg
    21841 gatattggtg gcggtgaaat cgctgttggc ggcattgggt gagaaacgcc acactttgcg
    21901 tgagccaatt acgctctgcc agttcagcca gtcgttgttg tcggcgttca taatggcgat
    21961 accgttttcc ggcaggccgc taaagatttc acctttcgct ttcgcgacac ccgcaagcga
    22021 gccaaaacct tccagatgcg ccgctgccag gttgttgacc agcgcagctt ccgggcgagt
    22081 cagactcaca gtccaggcta tttcgccctg atggttcgcg ccaagttcaa taactgcgta
    22141 atcgtattcc ggcgttaagc gcaacaacgt catcggtaca ccgatgtcgt tgttgagatt
    22201 gcctgccgta taaagcgtgt tgccgcactg gcttaaaatc gccgccgtca tctctttaac
    22261 ggaggttttg ccggaggaac ctgtcagagc aaccacgcgc gccggaactt gctggcgaac
    22321 ccatgcagcc agttcaccaa acgccagacg cgtatccttg acgattaact gcggcaggtc
    22381 gatatccagc ggacggctga ctagtagtgc gcccgcgccg ccagctttcg cctggtcggc
    22441 aaaatcgtgg gcatcaaaac gttctccttt cagggcaaca aacaggcagc ccggcgtcag
    22501 ttttcgggta tcagtggtta cagcatcaag ggtgatatct gcaccttgca gttcaccgtt
    22561 gagaatgtcg gtaagttggc taagggttac gctaatcatg caatcacccc cagcagacgc
    22621 gccaccgtga cgcgatcgga gtagtccaga cgctgattgc caacaatctg gtaatcttca
    22681 tggcctttgc ccgcgaccag caccacatcg ttctctttag cctgcataac ggcgcaagtc
    22741 accgcttcag cacggccttc catcactttg gcatgtccgg catctaacat tcccgccaga
    22801 atatcgttga tgatggcacg cggttcttcg gtacgcgggt tatcgtccgt caccaccgcc
    22861 acgtcagcaa actcttcggc aattgcgccc atcagtggac gcttaccttt atcgcgatcg
    22921 ccaccacagc caaagacaca ccacagcttg cccgcacagt gcagacgcgc cgcctgtaag
    22981 gctttttcca gtgcatccgg cgtatgcgcg taatccacca ccaccgtcgg tttgcctggc
    23041 gcagtgaaca cttccatacg tccgcaaacc ggttgcagac gcgcggcggt tttcaacaga
    23101 tcagccaatg gatagccgag tgccaacagt gtcgccagcg cgagcagcag gttgctgacg
    23161 ttaaaagcgc ctatcagatg gctttcaatt tcgccatcgc cccaacttga gctaaagcga
    23221 atcgtcacac cgctgtcgtg atagttcacg tcgatcactt ttaaccagcg tccgtgacag
    23281 ttcggattaa tatgatcttc cattgatacc gcaaccgcgt ccggcagctt tgccagccaa
    23341 cggcggccca cttcatcgtc ggcgttaata atcgcctgac cgcaatgatg ttcagaataa
    23401 agcagccatt tcgcagcttc gtagtgttcc atatcaccat gataatcaag gtgatcgcgg
    23461 cttaagttgg taaagaccga cgccgcaaat ttcaatgccg ccacacggtg ctgtaccagc
    23521 ccgtgggagg aaacttccat tgcgcaaaac gtcgcgccct gctccaccag ccccgccagc
    23581 tcatgctgaa catcgactgc cgaaccggtg gtattttctg tcgggatcac tttccccagc
    23641 agaccgttac caacggtgcc cattaccgcg ctggtttcgc caagcagttg gctccactgc
    23701 gccagcagct gggtagtcgt ggttttgccg ttggtgcccg ttacgcctac gagacgtaaa
    23761 ttgtcagagg gttcatggta aaagcggccc gccagtgcag ataaacgctc gttgagctgg
    23821 ctgagataga tgaccggtac gccgtgcatt tcacggattt caccgtcggt cgcctcatct
    23881 ttcgcctctg caataatggc agccacacct tgcgctatcg cctgcgggat atatcgacgc
    23941 ccgtccgcct gatgacctac tacagctaca aagagatcgc ccgccgcagc cacacggctg
    24001 tcgagtgtca tctctcgcag tgctcgcgaa ggtgcgtctg gcacccacgg agcaagaagg
    24061 tcgcgcaaat tacgatctgc cacctgtccc ctcgccttga ttaatcacaa attcattttt
    24121 atcgcccgtt gtcagcgcat ccggctcgat gttcatggta cgcaatacgc cgcccatgat
    24181 ggcaccaaag accggcgcgg aaacggcgcc gccgtagtat ttacccgcct gcggatcgtt
    24241 gataacaaca accagcgcga agcgcggctg actcgcaggc gcaacgcctg cggtataagc
    24301 aatatattta ttgatgtagc gaccgtccgg cccgaccttt ttcgcggtac cggttttaat
    24361 ggcgatacga tagcctttaa tcgccgcctt cacgccgccg ccgcccggta gcgccacgct
    24421 ttccatcata tgcaccacgg tgcggacaat ggattccggg aagacacgtt caccgggaac
    24481 cggggggtca actttggtaa tcgacagtgg gcgataaatg ccgtagctgc cgatagttgc
    24541 gtagactcgc gctaactgta acggtgttac cattagcccg tagccgaaag agaaggtggc
    24601 cctctctatg tcagaccacc gttgtttttg aggatataag ccactgcgtt ctccgaccaa
    24661 ccccaaattg gtcgcttttc ccagtccaaa acgtgagtaa gtatctacta acgctgagga
    24721 cggcatcgct aacgccagct tggaaacacc gacgttactc gacttctgta ataccccggt
    24781 cagggttaat tcgctgtagc gtgccacgtc tttgatttcg tggccgttaa ttcgataagg
    24841 aatggtattg agtaccgagt tttcccgcac cacgccacgt tgcaacgcgg tcatcaccac
    24901 catcggttta accgttgagc ccggttcaaa cacgtcggtg atggtacggt tacgcatcgc
    24961 ctctttcggc gtgccgctca gattgttagg gttgtatgac gggctgttag ccatcgccag
    25021 cacttcacct gtgttgacat ccaccagcac ggcgctacca gattcagcct tgttaaaggc
    25081 caccgcgttg ttcagttcgc gataaaccag cgcctgcagg cgttcatcaa tactcagcgc
    25141 caggttgtgc gctgcctggc tgtcagtaga agaaatatct tcaattacgc gaccatagcg
    25201 gtctttacgc acaatgcgct cacccggctg cccggtaagc catttatcga aactcttctc
    25261 aacgccctca atcccttgac tatcgacgtt agtaaagcca atgaggtgag cagtcacttc
    25321 gccggatgga taataacggc gagattcttc acgcagatga atacccggca gtttcagttt
    25381 tttgatgtag tccgccatgt cagggtttac ctgacgcgcc agataaataa agcgcccttt
    25441 cgggttggcg ttaatgcggg cagaaagctg atccagcgga atattgagcg cgttagccag
    25501 cgccttccag cggtcaccga cgctgatacc gccagcgtca tgcacttctt tcgggtcagc
    25561 ccaaatcgct tttaccggca cgctcaccgc taacgggcga ccagaacggt cagtaatcat
    25621 gccgcgggag gtggaaactt gctgaacgcg aagagaacgc atgtcgccct ctttcaccag
    25681 catatccggg gagataactt gtaaccacgc tacgcgtccg agcagaaaag ccagcgccag
    25741 gagaatacag ccgcataaca acgcaaaacg ccaactaata aagttggcat gttcttcctg
    25801 acgttttggt ttctgcgttt tcgccgctgc tttcatgcgt cgcgtttatc cttatttttg
    25861 cactacgata ttttcttgtg acggatcaac atgctgcatt tgcagctttt ccgtggcgat
    25921 cctttccacc cggctatggt cgccgagcgc attctcttca aggatcaggt tgcgccattc
    25981 aatgtctaaa gcatctcgct ccagcaccag ttgttcgcgc tgagcggtca gtaaacgggt
    26041 atggtgcgcc gtggttacca cggtcaccgc cgtcaaaata atgcaaatga acaggcagag
    26101 tggcagcttc ccaaatcgca aaagatcgtc accgataaca ccaggcaatg catggcgctc
    26161 gtggcttccc atcgatcctt taactttgct tagagcttct gtcactctgc tgatcatgcg
    26221 ttcgtcctct ctgcgatacg cagaactgaa ctacgggcac gaggattctc agccacctct
    26281 tcttcgcccg gcattaactt gcctaatgct cgcagctgac ggccacccag ttttttgagc
    26341 tgctcttcag tcatcggtaa ccctgccgga acttgcggac cgcggctgtt ttcacgcata
    26401 aaacgtttca caatacggtc ttccagcgag tggaagctga tgatcgaaag ccgcccaccc
    26461 ggggccagca cgttgagcga gctttttagc gcctgctcta tctcctccag ttcactgttt
    26521 acccaaatgc gcaccgcctg gaaggtacgg gtcgcgggat gtttaaactt atctttcacc
    26581 ggcgttgcag cagccacgac ttccgccagt tctttggtgc gggtcatcgg ctgttcgcgg
    26641 ttacgctcga caatggcgcg ggcaatgcgt ttggcaaaac gctcttcacc ataggttttc
    26701 aatacccagg cgatatcggc ttcttctgcg gtttgtagcc attcagcggc tgactgccca
    26761 cgggttgggt ccatacgcat gtccagcgga ccatcgcgca taaaggaaaa gccacgttca
    26821 gcatcatcaa gttgcggtga agagacgcca agatcgagga gaatgccgtc gatcttgccg
    26881 ataagatcgc gctcggcaac gtattcgccc agcgcggaga aaggtccgtg gatgatggag
    26941 aagcgcggat catcaatagt cttcgcaacg gcgatagcct gcgggtcgcg atcgatcgcc
    27001 agcaaacgcc cctcttcgcc aagctgcgag aggatcagac gtgagtgacc accgcgacca
    27061 aaagtcccat caatgtagat gccatcagga cggatattga ggccattaac ggcttcatcc
    27121 agcagcaccg tagtatgttt atagttttcc atcattttat agagacaagt cctgcagtcg
    27181 ctccgataag tctccagtag ccaactgctc tgcgtcgata tcttccttga cctgttgatg
    27241 ccaggttgtt tcatcccaca gctcaaactt gttgaactgt ccaaccagca tcacttcttt
    27301 tgtcagcccg gcatgttgcc gcagtactgg cgcgattaac aatcgacctg cgccatccat
    27361 ctgacattcg ctggcatgac ctaacagtag gcgctgcaca cggcgctcaa ctgggttcat
    27421 gctcgacaga cgcgataatt tttgctcgat aatttcccat tcaggcaggg ggtaaagcag
    27481 caggcacggg tgatgaatgt caatggtgca aaccatttga ccggcagcgt tctcaagcag
    27541 ctgttcccga taacgggtag gcactgataa gcgccctttg ctgtcgagat tgactaacgt
    27601 tgctccccgg aacatgccag cctcacccct tattcccact ttgccccaca atttcccact
    27661 gaaaggagtt tacggagcgg aggaaaagct tgtcaagcca gtcacaaggc ataccgaggt
    27721 aaaaaacccg atgtttacgg ctaatatcag cgttgtttat tttacgtcca acgcgcgaag
    27781 caaattaacg ttatgaatag ctgtaagaaa aaatccctca tcgtcatcac tgttttaaaa
    27841 tgactcacta ttttccacag caaatataaa gtgtcagttt gcgacgcgag cggcatttta
    27901 ggacatatct tccccggtta acagtccttg ttacgtctgt gtggcgcttg atgccagcgg
    27961 gtttgcgcaa aagcaaagaa aagtgtttgt taaatcggca attcatcgcc gcatgtaaca
    28021 aaataatgca aaaacgcgct gtcgatatca cttaattatt gtgaatttca gctggtgagt
    28081 taattaacgg gcgggtttaa aaccatttat caataatagt caggaatagt cttatttact
    28141 ttaagcatat tgatgtccag tcccgtactc tacgcgccag agggaaattc acctggcgcg
    28201 tatttttgtt cgcggcttag ctacggctga gcacaccgcg gcgatagaga ttacgtttaa
    28261 tgcgcgttaa accaggtttt ggcttacgcg gttcgtccag gcttgccagg acaatctcca
    28321 gcacacgctc tgcgacatcg cggtgacgtt gagccactgc cagcaccggg cactgtaaga
    28381 agtcgagcag ttcgttatcg ccaaaggtgg caattgccag gtcagaaggc agtttaccat
    28441 cgcgacgtag cgtgacatcc atcacccctt gcaacaacgc aaacgacgtt gtgaacagcg
    28501 cctgcggcat cggatgcgtt tccagccatt tttcgaataa ctgggcagcc gcctcccgct
    28561 catagctgtt ggcatacagg aaatgcactt cgcgcggatc atctttccag gcagtacgga
    28621 aaccttgttc acgcaggaag ctgacagaaa gctccggcag cgcgccaaga taaagcaccg
    28681 tctcggcggg aaacttacgt aactcttccg ccagcatttc ggcatcatcc tgatcggcac
    28741 caaccacgct ggtgaaatgt tcacgatcga gggcgcggtc cagcgcgaca atcgggaacg
    28801 ggtcgttagc ccagcgttga taaaaaggat gctcaggtgg caacgacgtc gaaacaataa
    28861 tggcatcaac ctgacgctgt aaaaggtgct caatgcagcg catttcgttg tctggctgat
    28921 cttctgagca ggcaatcagc agttgataac cccgttgccg cgcctggcgc tcaagatagt
    28981 tagcgatgcg ggtatagctg gtgttctcca gatcggggat cacaagacca atagaacgtg
    29041 tgcgtccagc acgaagccca gctgccacgg cgttcgggtg gtaattgtgc tcacgcacca
    29101 cagccatgac tttttcaacg gttttgtcgc tcacacggta ttgcttcgct ttgccgttaa
    29161 taacatagct tgcagtggtc cgcgacactc ccgccagccg agcgatttca tccagtttca
    29221 caattgcccc ttgcgtaaaa tgtaaaaacc atagccattg tactggtatg ggttaaattc
    29281 attaacatct aagcgcagaa aattaactgc ggcaactgct tttattccag gttcccactg
    29341 atttcgcaaa aaaagcccaa cgtgacatgt tgggctgcaa attgcacact gagatcattc
    29401 tcaacgcatt attttatcgc cgcgcgaaag tccgaccaca ccagagcgag caacttccac
    29461 aattttcgcc acctcgcgaa tcgatgctaa aaatgcatca agcttatcgc tggtgcctgc
    29521 taattgaacg gtataaagcg agggggtgac atcgataatt tgcccacgga atatttccgt
    29581 attacgtttc acttcgtcac gcccgtaacc gctggcctga attttcacca gcatgatttc
    29641 ccgctcaaca tgcgcgccct gccccaactc actcacgcgc aagacatcga ccagcttgtg
    29701 taattgcttt tcgatctgct caagtacttt ttcatcgccc acggtctgga tggtcatacg
    29761 cgataatgtc ggatcgtcgg ttggcgcaac ggtcaggctt tcaatgttgt agcctcgctg
    29821 ggaaaaaagg ccaatcacgc gggataacgc gcctgattca ttttcgagta agactgataa
    29881 tatccggcgc ataatcaggt tctctccgtt ttgcttaacc acatttcatc cattccgccc
    29941 ccgcgaatct gcatcgggta gacgtgctca ctgccatcga cggtaacatc aacaaacacc
    30001 aggcgattat tgcgcacctg ttccagcgcc tcgctaagtt tgctttccag ctcatgcgga
    30061 tgagagatct ggatcccgac gtgaccatag gcttccgcca gacggacgaa atcgggtagt
    30121 gattgcatat aagattgtga atgacggccg gaatagatca tgtcctgcca ctgtttcacc
    30181 atccccagat agcggttatt gagattcacc accagtacgg gcaactcgta ttgcaacgcg
    30241 gtagacagtt cctgaatgtt catctgaata ctgccgtcgc cagtgacgca aaccacggtt
    30301 tcttctggca acgccatttt gacgcccagt gccgcaggta aaccaaaacc catcgtgccg
    30361 aggccaccgg aattgatcca gcgacgcggt ttgtcgaatg gataataaag tgcagcaaac
    30421 atctggtgct gcccgacatc ggacgtcacg taagcgtctc ccttcgtcaa ccgccaaaga
    30481 gtctcgatca ccgcctgcgg tttaatcttt tcactgtgag tgtcatattt caggcactga
    30541 cgagcgcgcc actgttcaat ttgctgctac cagtcgcgga tctcatccag tggttgatgg
    30601 gcggattctt gcgacaagag ttcaagcatt tgttcgagga cctggcgagc atcccccaca
    30661 atcgggatat ccgcagtcac ggttttagaa atggaagtag gatcaatatc gatatgcaga
    30721 acagtggcat ttgggcagta ctttgccaga ttgttcgtcg ttcggtcatc aaatcgtacc
    30781 ccgacggcga aaatcacatc cgcgttatgc atcgtcatat tggcttcgta ggtaccgtgc
    30841 attcccagca tgcccagtgc ctgacgatgc gttgccggaa acgcccccag ccccatcaat
    30901 gaggaaacaa cgggcagatt caacgcctcc accgtttctt tcaactgctg atggcagccc
    30961 gccatgattg ccccaccgcc tacgtagaca accggttttt ttgccactac cagcgtttgc
    31021 agagcacgct taatttgccc tttatgtccg gtagtagtgg gattgtaaga acgcatactg
    31081 accgactccg gccagacata gggtaatttg ttcgccggat taagaatatc tttcggtaaa
    31141 tcaacgacta ctggtccagg acgaccactt gccgccagcc agaaagcctt tttcagcacc
    31201 tgcggaatgt cttccgtttg cttaaccaga aaactgtgtt taaccactgg tcgcgaaatc
    31261 cccaccatgt cgcactcctg aaaggcatcg taacctatca acgaggtcgc tacctgcccg
    31321 gaaaggacaa ctaatggaat ggaatccata taagcggtgg cgatgccggt aatcgcattg
    31381 gtcgcccctg gacccgacgt taccagcacg acgccgactt ccccggtcgc gcgcgccaga
    31441 ccatcggcca tatgcactgc cgcctgctca tgacgaacta aaacatgatc gataccacac
    31501 acggtatgca atgcatcgta aatatcaagg actgcgcctc caggataacc gaatacttgt
    31561 ttaacgccct gatcgataag cgatcggacg accatctcgg ctccagacaa catctccatg
    31621 gcctgcctca ctgtttgatg gaaaaaatgt gtaaaacaca ttaaccgtcc gatcttgctt
    31681 aagcaattgg cagccagaga cataaacgca gggtaataag aataaacagg aggaaaggtg
    31741 aaaagaaacg ataaaatcct ccattacgaa ggattaaatt gataataaat cggctgaatc
    31801 ccacaactta cagcaatttc tctatttttt taattaatcc taaaatagag agcccacaca
    31861 ttcagaataa aattctacat tcaataaaaa atgcagaata aaccagacat tcatgtctga
    31921 cctattctgc attcagttag cgtttgcaaa ttgagactaa ttgttcttcc atccactgat
    31981 ggcctttatc gcgcccggca gcttcatgcc atgagagata acaggttctg ctgttttgtt
    32041 ttaacagcag cggtaatacc tgtaattcta aggattcagc gaactcttca gccagccaac
    32101 gcggcgcaat agcgaccaaa tgcgtttgcg acaccacgct aagtacgctc atcattgcca
    32161 tgccctgata cgcgatactg gcttgcttat ctaccgtgtc ataccaaggt tgactaaatg
    32221 acgcgaaacg atcgagcgaa accgccgcat gttgttcgtt ataaacatca tgtttcagta
    32281 acgggccttt aattgttgga tgatttttgc tggctaccag caccatttca tctttaaata
    32341 atggcacgct ggtaaattca ggacgatgga agtcttcata actaatcaca aactccgttt
    32401 cctgataacg cagctgatgt tcagtgttct gatttaatga agacttgaac ataacatgta
    32461 tatttggcgc aatctgctca atgtgattat aaatctgcga ggtcagaatg ctgtctaacg
    32521 ggctgcaaac acaaagatga aatacacgtt cactactcgc gggttcaaaa cctgaaccag
    32581 gcaattcatt ttgtactagt tgcaatgcct ggcgaactga accaaaaagt tgaaatgcgc
    32641 gagcagtcgg ttgaatacca cggccataac gaacaaaaag ctcgtcatta aacatcacct
    32701 tcaggcgtgc aacagcgtta ctgaccgcag gttgcgacat acccagaaca tgagcggcac
    32761 gggtaatgtt ttgctcctgc atcacggcat cgaaaacggt taataagttg agatcgacca
    32821 tgcgtagctg tggcttgctt aactccgccg tctctgaatg atctgtttgt acctctggca
    32881 tacttaactc cactgtcaca cttaactccc tttcccttat tggaatgcag agaaataatc
    32941 ctgaagaata tgatttatca tgcatataaa ataagaaaaa gcaaaatgag taaaattcgg
    33001 aaaacataaa gatacgggtt ctgataaaaa cagaatccat tgccgtggaa tgagtcattt
    33061 accacagcat aataatccat aatgtttttg ttgcgaaaac aatctaatca taactaccgc
    33121 gaatactcaa tcatctacaa aatggattaa atgtgcttat ttaataatta atttatatat
    33181 ttaatgcatt aattattaac attaatggat caataatatt caccaaatca atatcaaaaa
    33241 aaattcgcaa aacatataat tcaatacaaa tcatcaggat aggttttgca acgcgtgcat
    33301 tttgtcccct ttttcctcgt tgattagatg caaaaattta ttctgaaata tgtcaaccta
    33361 tgaaaagtgt cggtcgttaa acagaaatta atatcgcttg ctttaaccac cgcagcacaa
    33421 ttagctaatt ttacggatgc agaactcgcg ctggcgggac gtttttattg cgtcagggtt
    33481 gacatccgtt tttgtatcca gtaactctaa aagcatatcg cattcatctg gagctgattt
    33541 aatgactcac atcgttcgct ttatcggtct actactacta aacgcatctt ctttgcgcgg
    33601 tagacgagtg agcggcatcc agcattaagc cagcacgcag tcaaacaaaa aacccgcgcc
    33661 attgcgcggg tttttttatg cccgaagcga ggcgctctaa aagagacaag gacccaaacc
    33721 atgagccagc aagtcattat tttcgatacc acattgcgcg acggtgaaca ggcgttacag
    33781 gcaagcttga gtgtgaaaga aaaactgcaa attgcgctgg cccttgagcg tatgggtgtt
    33841 gacgtgatgg aagtcggttt ccccgtctct tcgccgggcg attttgaatc agtgcaaacc
    33901 atcgcccgcc aggttaaaaa cagccgcgta tgcgcgttag ctcgctgcgt ggagaaagat
    33961 atcgacgtgg cggccgaatc cctgaaagtc gccgaagcct tccgtattca tacctttatt
    34021 gccacttcgc caatgcacat cgccaccaag ctgcgcagca cgctggatga agtgatcgaa
    34081 cgcgctatct atatggtgaa acgcgcccgt aattacaccg atgatgttga attttcttgc
    34141 gaagatgccg ggcgtacccc cattgccgat ctggcgcgag tggtcaaagc ggcgattaat
    34201 gccggtgcca ccaccatcaa cattccggac accgtgggct acaccatgcc gtttgagttc
    34261 gccggaatca tcagcggtct gtatgaacgc gtacctaaca tcgacaaagc cattatttcc
    34321 gtacataccc acgacgattt aggcctggcg gtcggcaact cactggcggc ggtacatgcc
    34381 ggtgcacgcc aggtggaagg tgcaatgaac gggatcggcg agcgtgccgg taactgttcg
    34441 ctggaagaag tcatcatggc gattaaagtt cgtaaggata ttctcaacgt ccacaccgcc
    34501 attaatcacc aggagatatg gcgcaccagc cagttagtta gccagatttg taatatgccg
    34561 atcccggcaa acaaagccat tgttggcagc ggcgcattcg ctcactcctc cggtatccac
    34621 caggatggcg tgctgaaaaa ccgcgaaaac tacgaaatca tgacaccaga atctattggt
    34681 ctgaaccaaa tccagctgaa tctgacctct cgttcggggc gtgcggcggt gaaacatcgc
    34741 atggatgaga tggggtataa agaaagtgaa tataatttag acaatttgta cgatgctttc
    34801 ctgaagctgg cggacaaaaa aggtcaggtg tttgattacg atctggaggc gctggccttc
    34861 atcggtaagc agcaagaaga gccggagcat ttccgtctgg attacttcag cgtgcagtct
    34921 ggctctaacg atatcgccac cgccgccgtc aaactggcct gtggcgaaga agtcaaagca
    34981 gaagccgcca acggtaacgg tccggtcgat gccgtctatc aggcaattaa ccgcatcact
    35041 gactataacg tcgaactggt gaaatacagc ctgaccgcca aaggtcacgg taaagatgcg
    35101 ctgggtcagg tggatattgt cgccaactac aacggtcgcc gcttccacgg cgtcggcctg
    35161 gccaccgata ttgtcgagtc ctccgccaaa gccatggtgc acgtactgaa caatatctgg
    35221 cgtgccgcag aagtcgaaaa agagttgcaa cgcaaagctc aacacaacga aaacaacaag
    35281 gaaaccgtgt gatgtcgaag aattaccata ttgccgtatt gccgggggac ggtattggtc
    35341 cggaagtgat gacccaggcg ctgaaagtgc tggatgccgt gcgcaaccgc tttgcgatgc
    35401 gcatcaccac cagccattac gatgtaggcg gcgcagccat tgataaccac gggcaaccac
    35461 tgccgcctgc gacggttgaa ggttgtgagc aagccgatgc cgtgctgttt ggctcggtag
    35521 gcggtccgaa atgggaacat ttaccaccag accagcaacc agaacgcggc gcgctgttgc
    35581 ctttgcgtaa gcacttcaaa ttattcagca acctgcgtcc ggcaaaactg tatcaggggc
    35641 tggaagcatt ctgtccgctg cgtgctgaca ttgccgctaa cggcttcgac atcctgtgcg
    35701 tgcgcgaact gaccggcggc atctatttcg gtcagccaaa aggccgcgaa ggtagcggac
    35761 agtatgaaaa agcgtttgat accgaggtgt atcaccgttt tgagatcgaa cgtatcgccc
    35821 gcatcgcgtt tgaatctgcc cgcaagcgtc gccacaaagt cacctcaatc gacaaagcca
    35881 acgtgctgca atcctctatt ttatggcggg agatcgttaa cgagatcgcc acggaatacc
    35941 cggatgtcga actggcgcat atgtacatcg acaacgccac catgcagctg attaaagatc
    36001 catcacagtt tgacgtcctg ctgtgctcca acctgtttgg cgacattctg tctgacgagt
    36061 gcgcaatgat cactggctcg atggggatgt tgccttccgc cagcctgaac gagcaaggtt
    36121 ttggtctgta tgaaccggca ggcggctcag caccagatat cacaggcaaa aacatcgcca
    36181 acccgattgc gcaaattctg tcgctggcac tgctgctgcg ctacagcctg gatgccgatg
    36241 atgcggcttg cgccattgaa cgcgccatta accgcgcatt agaagaaggc attcgcaccg
    36301 gggatttagc ccgtggcgct gccgccgtta gtaccgatga aatgggcgat atcattgccc
    36361 gctatgtggc agaaggggtg taatcatggc taaaacgtta tacgaaaaat tattcgacgc
    36421 tcacgtagtg tacgaagccg aaaacgaaac cccgctgtta tatatcgacc gccacctggt
    36481 gcatgaagtg acctcaccgc aggcgttcga tggtctgcgc gcccacggtc gcccggtacg
    36541 tcagccgggc aaaaccttcg ccactatgga tcacaacgtc tctacccaga cgaaagacat
    36601 taatgcctgt ggtgaaatgg cgcgcatcca gatgcaggag ctgattaaaa actgcaaaga
    36661 atttggcgtc gaactgtatg acctgaatca cccgtatcag gggatcgtcc acgtaatggg
    36721 gccggaacag ggcgtcacct tgccggggat gaccattgtc tgcggcgact cgcataccgc
    36781 cacccacggc gcgtttggcg cactggcctt tggtatcggc acttccgaag ttgaacacgt
    36841 actggcaacg caaaccctga aacagggccg cgcaaaaacc atgaaaattg aagtccaggg
    36901 caaagccgcg ccgggcatta ccgcaaaaga tatcgtgctg gcaattatcg gtaaaaccgg
    36961 tagcgcaggc ggcaccgggc atgtggtgga gttttgcggc gaagcaatcc gtgatttaag
    37021 catggaaggt cgtatgaccc tgtgcaatat ggcaatcgaa atgggcgcaa aagccggtct
    37081 ggttgcaccg gacgaaacca cctttaacta tgtcaaaggc cgtttgcatg cgccgaaagg
    37141 caaagatttc gacgacgccg ttgcctactg gaaaaccctg caaaccgacg aaggcgcaac
    37201 tttcgatacc gttgtcactc tgcaagcaga agaaatttca ccgcaggtca cctggggcac
    37261 caatccaggc caggtgattt ccgtgaacga caatattccc gatccggctt cgtttgccga
    37321 tccggttgaa cgcgcgtcgg cagaaaaagc gctggcctat atggggctga aaccgggcat
    37381 tccgctgacc gaagtggcta tcgacaaagt gtttatcggt tcctgtacca actcgcgcat
    37441 tgaagattta cgcgcggcag cggagatcgc caaagggcga aaagtcgcgc caggcgtgca
    37501 ggcactggtg gttcccggct ctggcccggt aaaagcccag gcggaagcgg aaggtctgga
    37561 taaaatcttt attgaagccg gttttgaatg gcgcttgcct ggctgctcaa tgtgtctggc
    37621 gatgaacaac gaccgtctga atccgggcga acgttgtgca tccaccagca accgtaactt
    37681 tgaaggccgc caggggcgcg gcgggcgcac gcatctggtc agcccggcaa tggctgccgc
    37741 tgctgctgtg accggacatt tcgccgacat tcgcaacatt aaataaggag cagaccatgg
    37801 cagagaaatt tatcaaacac acaggcctgg tggttccgct ggatgccgcc aatgtcgata
    37861 ccgatgcaat catcccgaaa cagtttttgc agaaagtgac ccgtacgggt tttggcgcgc
    37921 atctgtttaa cgactggcgt tttctcgatg aaaaaggcca acagccaaac ccggacttcg
    37981 tgctgaactt cccgcagtat cagggcgctt ccattttgct ggcacgagaa aacttcggct
    38041 gtggctcctc gcgtgagcac gcgccctggg cattgaccga ctacggtttt aaagtggtga
    38101 ttgcgccgag ttttgctgac atcttctacg gcaatagctt taacaaccag ctgctgccgg
    38161 tgaaattaag cgatgcagaa gtggacgaac tgtttgcgct ggtgaaagcc aatccgggga
    38221 tccatttcga cgtggatctg gaagcgcaag aggtgaaagc gggagagaaa acctatcgct
    38281 ttaccatcga tgccttccgc cgccactgca tgatgaacgg tctggacagt attgggctta
    38341 ccttgcagca cgacgacgcc attgccgctt atgaagcaaa acaacctgcg tttatgaatt
    38401 aatccccttg cccggtcaaa tgaccgggct ttccgctatc gtccacgtca tcaaacgtct
    38461 ttaacctttg cggttaaaaa taatgcgaca acagaaataa ccgcaattac ccagtagaca
    38521 gcaaagtgcc cccaactttg tgcaattgct ccctgaataa cgccagccag aattaccccg
    38581 gtagaaatac tgttagtaaa taaggtggta gctgcccccg ctcttccagg cattaattcc
    38641 tgaaaccata gcatcccaat acccgcaaca atgccgataa atacagcgtt aaaaagttgc
    38701 agcgtcatca acgccatacg gctatgaaag aaaatcaatc cggtgtaaaa cagtactcct
    38761 gccgccactg ctatgaccat cattcgccgc ttaccataac gtttgacata gtagccagcc
    38821 agaatcattg ctggtatttc cagtccagct gccgtcccca tcaggaaacc cgccagtttg
    38881 tctggcaatc ctaactcgct actgatccac aacggcatat caataatgta catggtgttg
    38941 caggtccaca ttaacgtcga ggcgacaaat aacatccgta cgttactatc ctgccagcca
    39001 ccttgcattg ataaagcatt ttccgacggc agttctaccc gcgccacaga cggaagcata
    39061 aatgcaatca ataccagact gagtgtgaat atcccggcgg caatcgaaaa catcaccact
    39121 tctcgcgccg agttatccgc atattcccgc gccagagcaa ataactgtgg cattgccgta
    39181 ttggccagag atgccagaag cacaccacag gtgataagcg tcagataatg acgattaaat
    39241 gcaaacaatg gcgcattgcc gatagccatc aaacagcaaa atataatcag ttttcgccga
    39301 tcgccctgac tgtcagaacg ttttgccaac cagaggctta cgccgatccc agcaatagta
    39361 ttcaccgtat aaaagagtcc gatccagaaa ggttgcgcgc caacctcacg actcagaaat
    39421 aagctcaatg taggagcctg tagcgccccg gccaccccca tcataaaagc gaccagcata
    39481 aatgccgcgt aaacaccgtt catacggcga gccatcgtca ttatccagat catacgttcc
    39541 ctttttagcg cggcgagaat aaaaaaaacc agcaggtata atctgctggc gggtgatttt
    39601 acaccaatac tcagtcacac atgatgcagg caagtcaact ttcagaattg cggtcatccc
    39661 actgcatcag tccttcaagc atggttaatc gttgtgggac gcttaaccaa cgcaaccagc
    39721 acaacttcgc tgtcgcggta aaatagtgct gataaaactg acgcatgggg cacctccttg
    39781 cttcatcttt aggaattatt gacttaatat agggaaaata aaattgctgt cttttgcgca
    39841 ggagttcccc ttttatgcca tctgctcgtc tgcaacaaca gttcatccgc ctgtggcaat
    39901 gctgcgaggg taaatcgcag gacacaacgc tcaacgaact ggcagcgtta ttgagctgct
    39961 cgcgtcgtca tatgcgtacc ctgctcaaca ccatgcagga tcgcggctgg ctgacgtggg
    40021 aagcggaagt cgggcgcggt aaacgctcgc gtctgacatt cctctatacc gggctggcgc
    40081 ttcagcaaca gcgggcggaa gacctgctgg agcaggatcg tatcgaccaa ctagtgcagt
    40141 tggttggcga caaagcgact gtgcggcaaa tgctggtttc tcatctgggc cgcagcttcc
    40201 gccaggggcg gcacatcctg cgcgtgctct actatcgtcc gttgcgtaat ctgctacctg
    40261 gcagcgcatt gcgccgttcc gaaacccata ttgcccggca aatcttcagt tcgctaacgc
    40321 gcataaatga ggaaaatggg gaactggaag cagacatcgc ccaccactgg cagcaaatat
    40381 caccgcttca ctggcgtttc tttttgcgtc caggagtcca ttttcatcat ggtcgtgaac
    40441 tggaaatgga cgacgtgatc gcctctttaa aacgaatcaa tacgctgccg ctctattcgc
    40501 atattgcgga cattgtgtcg ccgacgccct ggacgctgga tatccatctc acgcaaccgg
    40561 accgctggtt accgttactg ctggggcaag ttccggcgat gatcctgccg cgcgaatggg
    40621 aaaccctcag taactttgcc agccatccca tcggcaccgg tccgtatgcg gtgatccgca
    40681 acaccaccaa tcaactgaaa attcaggcat tcgatgactt cttcggttac cgggcattaa
    40741 tcgatgaagt taacgtctgg gttctgccgg aaattgccga cgagccagct ggaggtctga
    40801 tgctaaaagg tccacagggt gaggaaaaag agattgaaag ccgcctggag gaaggttgct
    40861 actatttact attcgacagc cgcacccatc gcggagcgaa tcagcaagtc agggactggg
    40921 taagctatgt gctttctcca actaatctgg tctatttcgc tgaggaacag taccagcaac
    40981 tgtggttccc ggcttatgga ctgctccccc gttggcacca tgcccgcacc ataaagagcg
    41041 aaaaaccggc tggcctggaa agcctcaccc tgacctttta tcaggatcac agtgagcatc
    41101 gggtgattgc cgggatcatg cagcagattc tggcaagtca ccaggtcacg ctggaaatca
    41161 aagagatcag ctacgatcag tggcatgaag gagagatcga gagcgatatc tggcttaata
    41221 gcgccaactt tacgctgccg ctggattttt cgctgttcgc gcacttgtgc gaggtgccgc
    41281 tgctccaaca ctgtattccg atcgactggc aagccgacgc cgcccgctgg cgcaatggcg
    41341 aaatgaacct ggcgaactgg tgccagcaac tggtcgccag taaagcaatg gtgccgctta
    41401 tccaccactg gctgatcatt cagggacaac gcagtatgcg cggcctgcgt atgaataccc
    41461 tcggctggtt cgattttaaa tcagcgtggt ttgcgccgcc ggatccatga ttgctggtag
    41521 ataacaaaat cattacacta acaccgttct caacggggtg ccacgcaaac gcgtgcgctg
    41581 agaaaatacc cgtcgaacct gatccggata acgccagcga agggatttga ggctccttct
    41641 caagtccttt gccactcttt tttgaggtgc aaagtgttaa aaaaatgtct tcccctgctg
    41701 ttgctgtgca cagcgcccgt tttcgctaaa cccgttctga ctgtttatac ctacgattcc
    41761 ttcgccgccg actgggggcc tggtccaaag atcaaaaaag cttttgaagc cgactgtaac
    41821 tgcgaactga aactggtggc gctggaagat ggcgtttcgc ttctcaaccg tctacggatg
    41881 gaaggcaaaa atagtaaagc cgatgtggtg ctggggctgg ataacaatct gttagacgcc
    41941 gccagtaaaa ccggactatt tgccaaaagc ggtgtggcag cggatgccgt taacgttccc
    42001 ggcggctgga ataatgacac tttcgtcccg tttgattacg gctatttcgc cttcgtctat
    42061 gacaagaaca aactgaaaaa cccgccgcaa agcctgaaag aattggttga gagcgatcaa
    42121 aactggcggg tgatttatca ggatccgcgc accagtacgc cggggctggg cctgctgttg
    42181 tggatgcaaa aagtctatgg cgatgacgcc ccacaagcct ggcaaaaact ggcgaagaaa
    42241 accgtcacgg tcaccaaagg ctggagcgaa gcctacggcc tgtttttaaa aggtgaaagc
    42301 gatctggtac tgagttacac cacctctccg gcttatcaca ttctcgaaga gaaaaaagat
    42361 aactacgccg ccgcgaactt tagcgaaggt cactatctgc aggtggaagt cgccgcccgc
    42421 accgctgcca gcaagcagcc ggagctggcg caaaaattcc tccagtttat ggtttctccg
    42481 gcttttcaga atgcgatccc aaccggtaac tggatgtatc cggtggcaaa tgtcacgctg
    42541 cctgccgggt ttgaacaatt gaccaaaccg gccaccacgc tggagttcac accagctgaa
    42601 gtggcggcac aacgtcaggc atggattagc ggatggcaac gcgccgtcag ccgttaattc
    42661 ccggctggtt aattccaggt gtaagcgccg ccacgctggt ggtagcggtt gcgctcgcgg
    42721 cgtttctcgc cctgtggtgg aacgcgccgc agggtaactg ggtggcagtc tggcaggaca
    42781 gctacctgtg gcatgtggtg cgcttctcct tctggcaggc gtttctctcg gcgctactct
    42841 ctgtcgtacc cgcgatattc ctcgcccgcg ccctctatcg caggcgcttt ccgggtcggc
    42901 tggcgctgtt gcgtctgtgc gcaatgacct tgatcctccc ggtgctggtt gctgttttcg
    42961 gcattcttag cgtctatggt cgccagggct ggctggcatc gctctgccaa tcgctcggtc
    43021 tggagtggac cttttcgccc tacggcctgc aaggtatttt gctggcgcac gtatttttta
    43081 atctgccgat ggcgagccgc ttattactcc aggcactgga aaacattccc gacgaacaac
    43141 gtcagcttgc cgcccagctt gggatgcgcg gctggcattt tttccgcttc gtcgaatggc
    43201 cgtggttacg gcgacaaatc ccgccggttg ctgcacttat ctttatgctc tgtttcgcca
    43261 gcttcgccac cgtgctatca ctgggcggcg gtccgcaggc gaccactatc gagctggcta
    43321 tttatcaggc gctgagttac gactacgatc ctgcccgcgc ggcgatgctg gcgctgatcc
    43381 agatggtgtg ttgccttggg ctggtactgt tgagtcagcg attgagtaag gccattgcgc
    43441 caggcaccac gctgctgcaa ggctggcgcg acccggacga tcgtctgcat agccgcattt
    43501 gcgacacggt gttaatagtg ctggcgctgc tgctgttgtt gccaccgttg ctggcggtga
    43561 tcgtcgatgg ggtaaatcgc cagttgccgg aagtgctggc acaaccggtg ctgtggcagg
    43621 cgctgtggac ctcgttgcgt attgcgctgg cggcaggtgt attgtgcgta gtgctgacca
    43681 tgatgctgct atggagcagt cgcgaacttc gggcgcggca gaaaatgctg gcgggtcagg
    43741 cgctggagat gagcggcatg ttgattctcg ccatgccggg gattgtgctg gctaccggct
    43801 tctttttact gctcaacaac actatcggcc tgcaacaatc tgctgacggc attgtgattt
    43861 tcaccaatgc gttaatggcg atcccttatg cgctgaaagt actggaaaac ccgatgcgcg
    43921 atatcaccgc ccgctacagt atgttgtgtc agtcgctggg cattgaaggc tggtcgcgct
    43981 taaaagtggt ggagctgcgc gccctgaaac gtccactggc gcaggcgctg gcctttgcct
    44041 gcgtgctgtc gattggtgat tttggcgtgg tggcgttgtt cggtaacgat gatttccgta
    44101 ccctgccgtt ttatctctac cagcaaattg gctcctatcg cagccaggac ggcgcggtca
    44161 ccgcgttaat tctgctgcta ctctgttttc tgctgtttac cgtgattgaa aaactaccgg
    44221 ggcgaaatgt taaaactgac tgatatcacc tggctttacc aacatttgcc gatgcgtttt
    44281 agcttaacgg tggaacgcgg cgagcaggtg gcgatcctcg ggccaagcgg cgcaggtaaa
    44341 agtaccctgc tgaatttgat tgccggtttt ctgacgccag ccagcggttc gctgactatc
    44401 gatggcgttg atcacaccac gacgccgccg tcacgccgtc cggtgtcgat gctgtttcag
    44461 gagaacaacc tgttcagcca cctgacggtc gcgcagaaca tcgggctggg gcttaatcca
    44521 ggattgaagc tgaacgcggc acagcaggag aaaatgcacg ctatcgcccg tcagatgggg
    44581 attgataatt taatggcgcg gttaccgggc gagctttccg gcggccagcg acagcgcgtg
    44641 gcgttagcgc gttgtctggt gcgcgaacag ccgattttat tgctcgatga accgttctct
    44701 gcgctcgatc cggcgttacg tcaggagatg ctgacgctgg tgagcacgag ctgccagcag
    44761 caaaaaatga cgctattgat ggtgtcgcac agtgtggaag atgcggcgcg gatcgccaca
    44821 cgctcggtgg tggtcgccga cgggcgcatc gcctggcagg gtaagactga agaattgttg
    44881 agcggtaagg cgagtgcttc ggcaatattg gggattacgg gttagtatgc actgtcagat
    44941 gcggcgtgaa caccttatcc gacctacgga cagtgcgttt tgtaggcctg ataagacgcg
    45001 gtcagcgtcg catcaggcaa cccgcacaag acaatcccct aaaccccaac cactttacgc
    45061 aaaatatcga tatacaccgg catcaacggc tggcgaatta acaccaccag cgccaccacg
    45121 ccgatggcag aaatcaacgg cgtcagccac aacaaacggc cgcgcgacaa ataatgactt
    45181 aaacgatcgg ttgctttacc gctgcgccat aaccgccagc acagccagcc accaacccac
    45241 aaaaataccg ccgtcgccag cagcaaccat ttaaactcgc cgctctgcat tccggctgga
    45301 atatcgatcg ccgcgcccgc cagaatccca ggcaggaagt aaaacggtgg ccacagcagg
    45361 cagccgataa tattcggcgt aatgaatttt gccaccggca gatccagcat tcccgccacc
    45421 attggcacca gcggacgcgt cgggccaaca aagcgaccga ccagaatggt gaacatgctg
    45481 tgttgatgca acgcatgttc agttttatcg agtaatgctt tgtttttctt cagaaatgac
    45541 cagcgatgca acggcttttt aaaacgccag cccagccaga aggagatcca gtcgcccagc
    45601 agacaaccga caatccctgc cagccaggcg tgccagaaac ttaactcgcc gctgccaatc
    45661 agcgctccca gccccgccat cagcaccgta ccgggtagaa tcaaaccgac cagcgccagc
    45721 gactccagaa aggccaccaa caccaccgcc atcaatgaat acacggtaga ttgggtaata
    45781 aagtgttcca gcaatgcttg cataatgtgc ctgtcaaatg gacgaagcag ggattctgca
    45841 aaccctatgc tactccgtca agccgtcaat tgtctgattc gttaccaatt atgacaactt
    45901 gacggctaca tcattcactt tttcttcaca accggcacgg aactcgctcg ggctggcccc
    45961 ggtgcatttt ttaaataccc gcgagaaata gagttgatcg tcaaaaccaa cattgcgacc
    46021 gacggtggcg ataggcatcc gggtggtgct caaaagcagc ttcgcctggc tgatacgttg
    46081 gtcctcgcgc cagcttaaga cgctaatccc taactgctgg cggaaaagat gtgacagacg
    46141 cgacggcgac aagcaaacat gctgtgcgac gctggcgata tcaaaatcgc tgtctgccag
    46201 gtgatcgctg atgtactgac aagcctcgcg tacccgatta tccatcggtg gatggagcga
    46261 ctcgttaatc gcttccatgc gccgcagtaa caattgctca agcagattta tcgccagcag
    46321 ctccgaatag cgcccttccc cttgcccggc gttaatgatt tgcccaaaca ggtcgctgaa
    46381 atgcggctgg tgcgcttcat ccgggcgaaa gaaacccgta ttggcaaata ttgacggcca
    46441 gttaagccat tcatgccagt aggcgcgcgg acgaaagtaa acccactggt gataccattc
    46501 gcgagcctcc ggatgacgac cgtagtgatg aatctctcct ggcgggaaca gcaaaatatc
    46561 acccggtcgg caaacaaatt ctcgtccctg atttttcacc accccctgac cgcgaatggt
    46621 gagattgaga atataacctt tcattcccag cggtcggtcg ataaaaaaat cgagataacc
    46681 gttggcctca atcggcgtta aacccgccac cagatgggca ttaaacgagt atcccggcag
    46741 caggggatca ttttgcgctt cagccatact tttcatactc ccgccattca gagaagaaac
    46801 caattgtcca tattgcatca gacattgccg tcactgcgtc ttttactggc tcttctcgct
    46861 aacccaaccg gtaaccccgc ttattaaaag cattctgtaa caaagcggga ccaaagccat
    46921 gacaaaaacg cgtaacaaaa gtgtctataa tcacggcaga aaagtccaca ttgattattt
    46981 gcacggcgtc acactttgct atgccatagc atttttatcc ataagattag cggatcctac
    47041 ctgacgcttt ttatcgcaac tctctactgt ttctccatac ccgttttttt ggatggagtg
    47101 aaacgatggc gattgcaatt ggcctcgatt ttggcagtga ttctgtgcga gctttggcgg
    47161 tggactgcgc cagcggtgaa gagatcgcca ccagcgtaga gtggtatccc cgttggcaaa
    47221 aagggcaatt ttgtgatgcc ccgaataacc agttccgtca tcatccgcgt gactacattg
    47281 agtcaatgga agcggcactg aaaaccgtgc ttgcagagct tagcgtcgaa cagcgcgcag
    47341 ctgtggtcgg gattggcgtt gacagtaccg gctcgacgcc cgcaccgatt gatgccgacg
    47401 gtaacgtgct ggcgctgcgc ccggagtttg ccgaaaaacc aaacgcgatg ttcgtattgt
    47461 ggaaagacca cactgcggtt gaagaagcgg aagagattac ccgtttgtgc cacgcgccgg
    47521 gcaacgttga ctactcccgc tacattggtg gtatttattc cagcgaatgg ttctgggcaa
    47581 aaatcctgca tgtgactcgc caggacagcg ccgtggcgca atctgccgca tcgtggattg
    47641 agctgtgcga ctgggtgcca gctctgcttt ccggtaccac ccgcccgcag gatattcgtc
    47701 gcggacgttg cagcgccggg cataaatctc tgtggcacga aagctggggc ggcttgccgc
    47761 cagccagttt ctttgatgag ctggacccga tcctcaatcg ccatttgcct tccccgctgt
    47821 tcactgacac ctggactgcc gatattccgg tgggcacctt atgcccggaa tgggcgcagc
    47881 gtctcggcct gcctgaaagc gtggtgattt ccggcggcgc gtttgactgc catatgggcg
    47941 cagttggcgc aggcgcacag cctaacgcac tggtaaaagt tatcggtact tccacctgcg
    48001 acattctgat tgccgacaaa cagagcgttg gcgagcgggc agttaaaggt atttgcggtc
    48061 aggttgatgg cagcgtggta cctggattta tcggtctgga agcaggccaa tcggcgtttg
    48121 gtgatatcta cgcctggttt ggtcgcgtac tcggctggcc gctggaacag cttgccgccc
    48181 agcatccgga actgaaagcg caaatcaacg ccagccagaa acaactgctt ccggcgctga
    48241 ccgaagcatg ggccaaaaat ccgtctctgg atcacctgcc ggtggtgctc gactggttta
    48301 acggccgccg cacaccgaac gctaaccaac gcctgaaagg ggtgattacc gatcttaacc
    48361 tcgctaccga cgctccgctg ctgtttggcg gtttgattgc tgccaccgcc tttggcgcac
    48421 gcgcaatcat ggagtgcttt accgatcagg ggatcgccgt caataacgtg atggcgctgg
    48481 gcggcatcgc gcggaaaaac caggtcatta tgcaggcctg ctgcgacgtg ctgaatcgcc
    48541 cgctgcaaat tgttgcctct gaccagtgct gtgcgctcgg tgcggcgatt tttgctgccg
    48601 tcgccgcgaa agtgcacgca gacatcccat cagcccagca aaaaatggcc agtgcggtag
    48661 agaaaaccct gcaaccgcgc agcgaacagg cacaacgctt tgaacagctt tatcgccgct
    48721 atcagcaatg ggcgatgagc gccgaacaac actatcttcc aacttccgcc ccggcacagg
    48781 ctgcccaggc cgttccgact ctataaggac acgataatga cgatttttga taattatgaa
    48841 gtgtggtttg tcattggcag ccagcatctg tatggcccgg aaaccctgcg tcaggtcacc
    48901 caacatgccg agcacgttgt taatgcgctg aatacggaag cgaaactgcc ctgcaaactg
    48961 gtgttgaaac cgctgggcac cacgccggat gaaatcaccg ctatttgccg cgacgcgaat
    49021 tacgacgatc gttgcgctgg tctggtggtg tggctgcaca ccttctcccc ggccaaaatg
    49081 tggatcaacg gcctgaccat gctcaacaaa ccgttgctgc aattccacac ccagtttaac
    49141 gcggcgctgc cgtgggacag tatcgatatg gactttatga acctgaacca gactgcacat
    49201 ggcggtcgcg agttcggctt cattggcgcg cgtatgcgtc agcaacatgc cgtggttacc
    49261 ggtcactggc aggataaaca agcccatgag cgtatcggct cctggatgcg tcaggcggtc
    49321 tctaaacagg atacccgtca tctgaaagtc tgccgttttg gcgataacat gcgtgaagta
    49381 gcggtcaccg atggtgataa agttgccgca cagatcaagt tcggtttctc cgtcaatacc
    49441 tgggcggttg gcgatctggt gcaggtggtg aactccatca gcgacggcga tgttaacgcg
    49501 ctggtcgatg agtacgaaag ctgctacacc atgacgcctg ccacacaaat ccacggcgaa
    49561 aaacgacaga acgtgctaga agcggcgcgt attgagctgg ggatgaagcg tttcctggaa
    49621 caaggtggct tccacgcgtt caccaccacc tttgaagatt tgcacggtct gaaacagctt
    49681 ccaggtctgg ccgtacagcg tctgatgcag cagggttacg gctttgcggg cgaaggcgac
    49741 tggaaaaccg ccgccctgct tcgcatcatg aaggtgatgt caaccggtct gcagggcggc
    49801 acctccttta tggaggacta cacctatcac ttcgagaaag gtaatgacct ggtgctcggc
    49861 tcccatatgc tggaagtctg cccgtcgatt gccgtagaag agaaaccgat cctcgacgtt
    49921 cagcatctcg gtattggtgg taaggacgat cctgcccgac tgatcttcaa tacccaaacc
    49981 ggtccagcga ttgtcgccag cctgattgat ctcggcgatc gttaccgtct gctggttaac
    50041 tgtatcgaca cggtgaaaac accgcactcc ctgctgaaac tgccggtggc gaatgcgctg
    50101 tggaaagcgc aaccggatct gccaactgct tccgaagcgt ggatcctcgc tggtggcgcg
    50161 caccataccg tcttcagcca tgcgctgaac ctcaacgata tgcgtcagtt cgccgagatg
    50221 cacgacattg aaatcacggt gattgataac gacacccgcc tgccagcgtt taaagacgca
    50281 ctgcgctgga acgaagtgta ttacggattt cgtcgctaag tagccacatc aggtatgtaa
    50341 cgcctgatgc gacgctgacg cgtcttatct ggcctacacg ctgcgatttt gtaggccgga
    50401 taagcaaagc gcatccggca ttcaacgcct gatgcgacgc tggcgcgtct tatcaggcct
    50461 acgcgctgcg attttgtaga ccggataagc gaagcgcatc cggcacgaag gagtcaacat
    50521 gttagaagat ctcaaacgcc aggtattaga agccaacctg gcgctgccaa aacacaacct
    50581 ggtcacgctc acatggggca acgtcagcgc cgttgatcgc gagcgcggcg tctttgtgat
    50641 caaaccttcc ggcgtcgatt acagcgtcat gaccgctgac gatatggtcg tggttagcat
    50701 cgaaaccggt gaagtggttg aaggtacgaa aaagccctcc tccgacacgc caactcaccg
    50761 gctgctctat caggcattcc cctccattgg cggcattgtg catacgcact cgcgccacgc
    50821 caccatctgg gcgcagtcgg gtcagtcgat tccagcaacc ggcaccaccc acgctgacta
    50881 tttctacggc accattccct gcacccgcaa aatgaccgac gcagaaatca acggcgaata
    50941 tgagtgggaa accggtaacg tcatcgtaga aacctttgaa aaacagggta tcgatgcagc
    51001 gcaaatgccc ggcgttctgg tccattccca cggcccgttt gcatggggca aaaatgccga
    51061 agatgcggtg tataacgcca tcgtgctgga agaggtcgct tatatggaga tattctgccg
    51121 tcagttagcg ccgcagttac cggatatgca gcaaacgctg ctggataaac actatctgcg
    51181 taagcatggc gcgaaggcat attacgggca gtaatgactg tataaaacca cagccaatca
    51241 aacgaaacca ggctatactc aagcctggtt ttttgatgga ttttcagcgt ggcgcaggca
    51301 ggttttatct taacccgaca ctggcgggac accccgcaag ggacagaagt ctccttctgg
    51361 ctggcgacgg acaacgggcc gttgcaggtt acgcttgcac cgcaagagtc cgtggcgttt
    51421 attcccgccg atcaggttcc ccgcgctcag catattttgc agggtgaaca aggctttcgc
    51481 ctgacaccgc tggcgttaaa ggattttcac cgccagccgg tgtatggcct ttactgtcgc
    51541 gcccatcgcc aattgatgaa ttacgaaaag cgcctgcgtg aaggtggcgt taccgtctac
    51601 gaggccgatg tgcgcccgcc agaacgctat ctgatggagc ggtttatcac ctcaccggtg
    51661 tgggtcgagg gtgatatgca caatggcact atcgttaatg cccgtctgaa accgcatccc
    51721 gactatcgtc cgccgctcaa gtgggtttct atagatattg aaaccacccg ccacggtgag
    51781 ctgtactgca tcggcctgga aggctgcggg cagcgcatcg tttatatgct ggggccggag
    51841 aatggcgacg cctcctcgct tgatttcgaa ctggaatacg tcgccagccg cccgcagttg
    51901 ctggaaaaac tcaacgcctg gtttgccaac tacgatcctg atgtgatcat cggttggaac
    51961 gtggtgcagt tcgatctgcg aatgctgcaa aaacatgccg agcgttaccg tcttccgctg
    52021 cgtcttgggc gcgataatag cgagctggag tggcgcgagc acggctttaa aaacggcgtc
    52081 ttttttgccc aggctaaagg tcggctaatt atcgacggta tcgaggcgct gaaatccgcg
    52141 ttctggaatt tctcttcatt ctcgctggaa actgtcgctc aggagctatt aggcgaagga
    52201 aaatctatcg ataacccgtg ggatcgaatg gacgaaattg accgccgttt cgccgaagat
    52261 aaacctgcgc tggcaactta taacctgaaa gattgcgagc tggtgacgca gatcttccac
    52321 aaaactgaaa tcatgccatt tttactcgaa cgggcaacgg tgaacggcct gccggtggac
    52381 cgacacggcg gttcggtggc ggcatttggt catctctatt ttccgcgaat gcatcgcgct
    52441 ggttatgtcg cgcctaatct cggcgaagtg ccgccgcacg ccagccctgg cggctacgtg
    52501 atggattcac ggccagggct ttatgattca gtgctggtgc tggactataa aagcctgtac
    52561 ccgtcgatca tccgcacctt tctgattgat cccgtcgggc tggtggaagg catggcgcag
    52621 cctgatccag agcacagtac cgaaggtttt ctcgatgcct ggttctcgcg agaaaaacat
    52681 tgcctgccgg agattgtgac taacatctgg cacgggcgcg atgaagccaa acgccagggt
    52741 aacaaaccgc tgtcgcaggc gctgaaaatc atcatgaatg ccttttatgg cgtgctcggc
    52801 accaccgcct gccgcttctt cgatccgcgg ctggcatcgt cgatcaccat gcgtggtcat
    52861 cagatcatgc ggcaaaccaa agcgttgatt gaagcacagg gctacgacgt tatctacggc
    52921 gataccgact caacgtttgt ctggctgaaa ggcgcacatt cggaagaaga agcggcgaaa
    52981 atcggtcgtg cactggtgca gcacgttaac gcctggtggg cggaaacgct gcaaaaacaa
    53041 cggctgacca gcgcattaga actggagtat gaaacccatt tctgccgttt tctgatacca
    53101 accattcgcg gagccgatac cggcagtaaa aagcgctacg ccgggctgat tcaggagggc
    53161 gataaacagc ggatggtgtt taaagggctg gaaaccgtgc gcaccgactg gacgccgctg
    53221 gcccagcagt ttcagcagga gctatacctg cgcatcttcc gcaacgagcc atatcaggaa
    53281 tatgtacgcg aaaccatcga caaactgatg gcgggtgaac tggatgcgcg actggtttac
    53341 cgtaaacgcc ttcgccgtcc gctgagcgag tatcagcgta atgtgccgcc tcatgtacgc
    53401 gccgctcgcc ttgccgatga agaaaaccaa aagcgtggtc gccccttgca atatcagaat
    53461 cgcggcacca ttaagtacgt atggaccacc aacggcccgg agccgctgga ctaccaacgt
    53521 tcaccactgg attacgaaca ctatctgacc cgccagctac aacccgtggc ggagggaata
    53581 ctccctttta ttgaggataa ttttgctaca cttatgaccg ggcaacttgg gctattttga
    53641 gcaaaaaaag agttcgccag ataccatttt gatgcgtgac gaatgctttg ccatccagta
    53701 ccatagcgcc ctttccattc ctggacctga ataacaccac tacctcataa gcacggtagc
    53761 gggtggttat tgcctgcaat taaagatata gagccgaaca catatgcctt ttacacttgg
    53821 tcaacgctgg atcagcgata cagaaagcga attgggactt ggaaccgttg tcgcggtgga
    53881 tgcgcgaact gtcactttac ttttcccatc tactggtgaa aaccgtctgt acgcacgcag
    53941 tgattccccc gtgacccgcg tgatgttcaa ccctggtgat accattacca gccatgacgg
    54001 ctggcagatg caagtcgaag aagtaaaaga agaaaatggc ttgctgacct atatcggtac
    54061 tcgcctggat actgaagagt ccggcgtagc cctgcgtgaa gttttccttg atagcaaact
    54121 ggtgttcagc aaaccgcagg accgcctgtt tgccgggcag attgaccgta tggaccgctt
    54181 tgcgctgcgt tatcgcgcgc gtaagtattc cagcgaacag ttccgtatgc cgtacagcgg
    54241 cctgcgcggt cagcgtacca gcctgatccc gcaccagctc aacatcgctc atgatgttgg
    54301 ccgccgccac gcgccgcgcg tcctgctggc tgacgaagtg ggtttaggga aaaccattga
    54361 agccgggatg atcctgcatc agcaactgct ctctggcgct gctgaacgtg tgctgattat
    54421 cgtcccggaa accttacagc atcagtggct ggtagaaatg ctgcgccgtt tcaacctgcg
    54481 ctttgctctg tttgatgatg agcgttatgc cgaagctcag cacgatgctt acaacccgtt
    54541 tgacaccgaa cagctggtga tttgctcgct ggattttgcc cgtcgtagca aacagcgcct
    54601 ggaacatctc tgtgaagccg aatgggacct gctggtggtc gatgaagcgc atcacctggt
    54661 gtggagcgaa gatgcgccaa gccgtgaata tcaggccatt gaacaactgg cagagcacgt
    54721 gccgggcgtt ctgctgctga ccgcgacccc ggaacagctg gggatggaaa gccacttcgc
    54781 ccgtctgcgt ctgctggacc cgaaccgttt ccacgatttt gcgcagttcg ttgaagagca
    54841 gaaaaattat cgtccggttg cggacgccgt tgccatgctg ctggcaggta acaaactgag
    54901 caatgacgaa ctgaacatgc tcggcgagat gatcggcgag caggatatcg agccgctgtt
    54961 gcaggcagca aacagcgaca gcgaagatgc ccagagcgcc cgtcaggagc tggtttcgat
    55021 gctgatggat cgccacggca ccagccgcgt gctgttccgt aacacgcgta acggtgtgaa
    55081 aggattcccg aaacgcgagc tgcacaccat taagctgccg ctaccgacgc agtatcagac
    55141 ggctattaaa gtctccggca ttatgggcgc acgtaaaagt gcggaagatc gtgctcgcga
    55201 tatgctctac ccggagcgta tttatcagga atttgaaggt gataacgcca cctggtggaa
    55261 cttcgatccg cgcgttgagt ggctgatggg ctacctgacc agccatcgct ctcagaaagt
    55321 gctggtgatc tgcgccaaag ctgccactgc gctgcaactg gagcaggtac tgcgcgaacg
    55381 tgaaggtatt cgcgctgcgg tgttccacga aggtatgtcg attatcgaac gtgaccgcgc
    55441 tgccgcctgg tttgccgaag aagacaccgg cgcacaggta ctgctgtgct cagaaatcgg
    55501 ttctgaagga cgtaacttcc agttcgccag ccacatggtg atgtttgacc tgccattcaa
    55561 cccggatcta ctggagcagc gtattggtcg tctggatcgt atcggccagg cgcacgatat
    55621 tcagatccat gtgccttatc tggagaaaac cgctcagtcg gtgctggtgc gctggtatca
    55681 cgaaggtctg gatgcatttg agcacacctg cccgaccgga cgcactattt acgatagcgt
    55741 atacaacgat ctgattaact atctggcttc accggatcaa accgaaggct ttgacgatct
    55801 gatcaaaaac tgccgcgagc aacatgaagc gctgaaagca cagctggaac agggtcgtga
    55861 ccgcctgctg gaaatccact ccaacggtgg cgaaaaagcc caggcactgg cagaaagcat
    55921 tgaagagcag gatgacgata ccaacctgat cgccttcgcc atgaacctgc tcgatattat
    55981 cggtatcaat caggacgatc gcggcgacaa catgatcgtg ctgacgccgt ccgatcatat
    56041 gctggtgccg gacttccctg gcctgtcgga agatggcatc accatcacct ttgatcgtga
    56101 agtggcgctg gcgcgtgaag atgcacagtt tattacctgg gagcatccgc tgatccgcaa
    56161 cggtctggat ctgatccttt ctggcgatac cggtagcagc acgatttcac tgttaaaaaa
    56221 caaagcgttg ccggtaggta cgctgttggt ggaactgatt tatgtggttg aagcccaggc
    56281 tccgaagcag ttgcagctca accgcttcct gccaccgacg ccggtacgta tgctgctgga
    56341 taaaaacggc aacaacctgg cggcgcaggt agagtttgaa acctttaacc gccagcttaa
    56401 cgcggttaac cgtcacaccg gcagcaaact ggttaacgcc gtgcagcagg atgttcacgc
    56461 tatccttcaa ctgggtgaag cgcagatcga gaaatctgcc cgtgcattga ttgatgcagc
    56521 gcgtaacgaa gccgacgaaa aactgtctgc cgagctgtct cgtctggaag ctctgcgtgc
    56581 agtgaacccg aacattcgtg acgacgaact gaccgccatt gagagcaacc gtcagcaggt
    56641 aatggaaagc ctggatcagg caggttggcg tctggatgcc ctgcgtttga tcgttgtaac
    56701 gcatcagtaa cggagccgaa aatggggatg gaaaactaca atccaccgca ggaaccctgg
    56761 ttggttatcc tgtatcagga tgaccacatt atggtggtta acaagccgag cggtttgttg
    56821 tctgtgccgg ggcgtctgga agagcacaaa gacagcgtga tgacgcgcat tcagcgtgat
    56881 tatccgcagg cagaatcggt gcatcgtctg gatatggcta ccagcggcgt gattgtagtg
    56941 gcgctgacca aagccgcgga gcgggagtta aaacgccagt tccgcgagcg cgagccgaaa
    57001 aagcagtatg tggcccgcgt ctgggggcat ccatcccctg cggaaggtct ggtggatctg
    57061 ccgctgattt gcgactggcc aaaccgcccg aaacagaaag tctgttacga aacgggtaaa
    57121 cctgcgcaga cggaatatga agtggtggag tatgcggcgg ataacacggc aagagtggtg
    57181 ttaaaaccga ttactgggcg ttcgcatcaa ttgcgtgtgc atatgctggc gctggggcat
    57241 ccgattctcg gcgatcgttt ttatgcatca ccagaagcga gagcgatggc accgcgtttg
    57301 ttgctacatg cagagatgtt gacgattacc catccggcgt atggcaatag tatgacgttt
    57361 aaagcgccag cggattttta atagtcacgc tggcgcagtt cggtaggcgg ataaggcgtt
    57421 cacgccgaat ccggcaattg tgcgccgatt gcctgatgcg acgcgggccg cgtcttatca
    57481 ggcctacagt ttaaaactta tttaaaccct ttctgctgct ttatcagctc atatgcctgc
    57541 tgaatttcct gcgctttctg cttcgccatc tccatcatct caggcggcaa acctttcgcc
    57601 accagcttat cgggatggtg ttcattcatc agcttacggt aggctcgttt aatggtggtc
    57661 gcatcatccg tcggcttcac acccagcaca ttacaggcat cttccagcgt cgggccacgc
    57721 tgcgcttgct gccagttacc accgccagat tgctgctgat aaccgccgcc aaactgtgca
    57781 ccgccctgca tcatgcgcaa aaactggtca aactgggcgc gggagatccc taattcttct
    57841 gcaatgacat acagcaccga ccgttcattc gggtgcagtg aaccatcagc aaacgccgcc
    57901 tgaatctgga tctccagaaa catacgaatt aagtcaaaac gaccaaagca gacactgcga
    57961 aactggcgca tcttttcgcg cagcgggtaa ttgtctgatt ttcccacccg gaacgcgttt
    58021 tgcgccgcag tacgggaagc gccatgaagg ttcattaggt ccatcagctg gctggcgata
    58081 tgaatatcag cctccgtgac gcgacctttg gatttggtta aatgccccat cacttcaaaa
    58141 gtggtggcaa aaaacagcgc ctgacgctca cgctggttgg cgaaccacgc cattttacgg
    58201 ctacgggctt tatcaaacat atggccaatt aacaggccta acactacgcc ccaaaagccg
    58261 ccgcccatca gtaaggccac ggccacgcca atgatttttc cccaatactg catatattcc
    58321 ccaaatcgac acacggatat cagggctatc tcccacaata taaaggtgct tttaccgttt
    58381 tccggctgca gtcaattgtg ggacatcgcc tataatttgc attatcatac ctgtcattca
    58441 atgccgtgcc taacaccact gacgctattc ggacaggatt aacactagcg tagagatgac
    58501 gagtacgtta gtctctgacc gtttgtcacg cgcaacgtta ccgatgatgg aacaataaaa
    58561 tcaacgtatg aaaaaacgta tccccactct cctggccacc atgattgcca ccgcccttta
    58621 tagtcaacag ggactggcag ccgacctcgc ctcacagtgc atgttgggcg tgccaagcta
    58681 tgaccgtcct ctggtacagg gcgataccaa tgacttaccc gtgactatca atgctgacca
    58741 cgcgaaaggg gactacccgg atgacgccgt gtttactggc agcgtggata tcatgcaggg
    58801 taacagccgt ctgcaggccg acgaagtgcc gctccatcaa aaagaggcac caggacaacc
    58861 ggagccggta cgaaccgttg atgcgctcgg taatgtccat tacgacgata accaggtgat
    58921 cctcaaaggg ccgaaaggct gggcgaatct gaacaccaaa gataccaacg tctgggaagg
    58981 tgattaccag atggtgggtc gccagggccg cggtaaagcg gacctgatga aacaacgtgg
    59041 tgaaaaccgc tataccattc tggataacgg tagctttacc tcctgtctgc cgggttctga
    59101 cacctggagc gtggtaggta gcgaaattat tcatgaccgc gaagaacaag ttgcggagat
    59161 ctggaacgcc cgctttaagg tgggtccagt accgatcttt tatagcccct atttgcagtt
    59221 gccggtgggt gacaaacgtc gctctggttt cttgatcccg aacgccaagt acaccaccac
    59281 caactacttt gagttctacc tgccatatta ctggaacatc gcgccaaata tggatgccac
    59341 catcacgccg cattatatgc atcgtcgtgg caacatcatg tgggagaacg aattccgcta
    59401 cctctcccag gcgggcgctg gcttgatgga actggactat ctgccttcag ataaagtcta
    59461 tgaagatgaa cacccgaacg atgacagttc acgtcgttgg ttgttctact ggcaacactc
    59521 cggggtcatg gatcaagtgt ggcgtttcaa cgtcgactac accaaggtca gcgatcctag
    59581 ctacttcaat gatttcgata acaagtacgg ttccagtact gacggctacg caacgcaaaa
    59641 attcagcgtt ggctatgcgg tgcaaaactt caatgccacc gtttcaacca agcagttcca
    59701 ggtctttagc gagcagaaca ccagtagcta ctcggcagag ccgcagttag acgttaacta
    59761 ctaccagaat gatgttggtc cgtttgatac gcgtatttac ggccaggcag tgcactttgt
    59821 taacaccaga gacgacatgc ctgaagcaac ccgtgttcac ctggaaccga ccatcaattt
    59881 gccgctctct aataactggg gcagcatcaa taccgaagcg aagttgctgg caacccatta
    59941 tcagcaaacc aatcttgact ggtataactc cagaaacacg accaagctgg acgaatccgt
    60001 taaccgcgtt atgccgcaat tcaaagttga cggcaaaatg gtctttgaac gcgatatgga
    60061 aatgctggct ccgggttata cccaaacgct ggaaccgcgc gcgcagtatt tgtacgtgcc
    60121 gtatcgcgat cagagcgaca tctataacta cgactcgtct ctactgcaat ctgactactc
    60181 tggcctgttc cgggaccgga cttacggcgg tcttgaccgt attgcctccg ctaaccaggt
    60241 gacgaccggt gtcacatctc gcatatatga tgatgctgcc gttgaacatt ttaatatttc
    60301 cgttggtcaa atctactatt tcacggagtc tcgcactggc gatgacaaca taacatggga
    60361 gaatgacgac aaaacgggct cactggtgtg ggcaggcgat acttactggc gtatctccga
    60421 gcgttgggga ttgcgtggcg ggattcagta cgatacacgt ctggataacg tagcgaccag
    60481 taactccagc attgaatacc gtcgggatga agaccgtctg gtacagctga attaccgtta
    60541 cgccagcccg gaatatattc aggctacgct gcctaagtac tattccactg ctgagcaata
    60601 taagaatggt atttcgcagg taggtgctgt cgccagctgg ccaattgccg atcgttggtc
    60661 cattgttggg gcctactact acgacaccaa tgcgaacaag caagccgact ctatgttagg
    60721 tgtgcaatac agctcctgct gctatgcaat tcgcgtcggt tacgagcgga agctgaacgg
    60781 ttgggataac gataaacaac atgcggtata tgacaacgca atcggcttta acatcgaact
    60841 tcgcggcctg agctccaact acggtctgga tacgcaagag atgctgcgtt cgaacattct
    60901 gccgtatcaa aacactttgt gatttgttga tttaccacgt aatccgcagt gcggttaatt
    60961 gaaatggaaa aagtatgaag aactggaaaa cgctgcttct cggtatcgcc atgatcgcga
    61021 ataccagttt cgctgccccc caggtagtcg ataaagtcgc agccgtcgtc aataacggcg
    61081 tcgtgctgga aagcgacgtt gatggattaa tgcagtcggt aaaactgaac gctgcgcagg
    61141 caaggcagca gcttcctgat gacgcgacgc tgcgccacca aatcatggaa cgtttgatca
    61201 tggatcaaat catcctgcag atggggcaga aaatgggagt gaaaatctcc gatgagcagc
    61261 tggatcaggc gattgctaac atcgcgaaac agaacaacat gacgctggat cagatgcgca
    61321 gccgtctggc ttacgatggt ctgaactaca acacctatcg taaccagatc cgcaaagaga
    61381 tgattatctc tgaagtgcgt aacaacgagg tgcgtcgtcg catcaccatc ctgccgcagg
    61441 aagtcgaatc cctggcgcag caggtgggta accaaaacga cgccagcact gagctgaacc
    61501 tgagccacat cctgatcccg ctgccggaaa acccgacttc tgatcaggtg aacgaagcgg
    61561 aaagccaggc gcgcgccatt gtcgatcagg tgcgtaacgg cgctgatttc ggtaagctgg
    61621 cgattgctca ttctgccgac cagcaggcgc tgaacggcgg ccagatgggc tggggccgta
    61681 ttcaggagtt gccgggtatc ttcgcccagg cattaagcac cgcgaagaaa ggcgacattg
    61741 ttggcccgat tcgttccggc gttggcttcc atattctgaa agttaacgac ctgcgcggcg
    61801 aaagcaaaaa tatctcggtg accgaagttc atgctcgcca tattctgctg aaaccgtcgc
    61861 cgatcatgac tgacgaacag gcccgtgtga aactggaaca gattgctgcc gatatcaaga
    61921 gtggtaaaac gacttttgct gccgcagcga aagagttctc tcaggatcca gactctgcta
    61981 accagggcgg tgatctcggc tgggctacac cagatatttt cgatccggcc ttccgtgacg
    62041 ccctgacccg cctgaacaaa ggtcaaatga gtgcaccggt tcactcttca ttcggctggc
    62101 atttaatcga actgctggat acccgtaatg tcgataaaac cgacgctgcg cagaaggatc
    62161 gtgcataccg catgctgatg aaccgtaagt tctcggaaga agcagcaagc tggatgcagg
    62221 aacaacgcgc cagcgcctac gttaaaatcc tgagcaacta atggttaaaa cccaacgtgt
    62281 tgtgatcact cccggcgagc ccgccgggat tggcccggac ttagttgtcc agcttgcaca
    62341 gcgtgagtgg ccggtcgaac tggttgtttg tgccgatgcc actctcctta ccgaccgggc
    62401 agcgatgctc ggtttgccgc tcaccctccg cccttattcc cccaactccc ctgcacaacc
    62461 gcaaactgcg ggcacattaa cgctacttcc tgtcgcgcta cgcgaatctg tcactgcggg
    62521 gcagttagcg attgaaaatg ggcattacgt ggtggagacg ctggcgcgag cgtgtgatgg
    62581 ctgtctgaac ggtgaatttg ctgcgctgat cacaggcccc gtgcataaag gcgtcattaa
    62641 cgacgcaggt attccgttta ctggtcatac cgagtttttc gaagagcgct cgcaggcgaa
    62701 aaaagtggtg atgatgctgg cgaccgaaga acttcgcgtg gcgctggcaa cgacgcattt
    62761 accgctgcgc gatatcgcag atgctatcac ccctgcactt ttgcacgaag tgattgctat
    62821 tttgcatcac gatttgcgta caaaatttgg tattgccgaa ccgcgcattc tggtctgcgg
    62881 gctgaatccg cacgcgggcg aaggcggtca tatgggtacg gaagagatag acaccattat
    62941 tccggtgctc gacgagctgc gggcgcaggg gatgaaactc aacgggccgc tgcctgccga
    63001 taccctgttt cagccgaaat atctcgataa cgccgacgcc gtgctggcga tgtaccacga
    63061 tcagggtctt cccgtgctaa aataccaggg cttcgggcgc ggtgtgaaca ttacgctggg
    63121 cctgcccttt attcgcacat cagtggacca cggcaccgcg cttgaactgg cgggacgtgg
    63181 cgaagccgat gtcggcagtt ttattacggc gcttaatctc gccatcaaaa tgattgttaa
    63241 cacccaatga ataatcgagt ccaccagggc cacttagccc gtaaacgctt cgggcaaaac
    63301 tttctcaacg atcagttcgt gatcgacagc attgtttctg ccattaaccc gcaaaagggc
    63361 caggcaatgg tcgaaatcgg ccccggtctg gcggcattga ccgagccggt cggcgaacgt
    63421 ctggaccagc tgacggtcat cgaacttgac cgcgatctgg cggcacgtct gcaaacgcat
    63481 ccattcttag gcccgaaact gacgatttat cagcaggatg cgatgacctt taactttggc
    63541 gaactggccg agaaaatggg tcagccgctg cgtgttttcg gcaacctgcc ttataacatc
    63601 tccacgccgt tgatgttcca tctgtttagc tatactgatg ccattgccga catgcacttt
    63661 atgttgcaaa aagaggtggt gaatcgtctg gttgcaggac cgaacagcaa agcgtatggt
    63721 cgattaagcg tcatggcgca atactattgc aacgtgatcc cggtactgga agttccgccg
    63781 tcagccttta caccaccacc caaagtggat tccgccgtcg tgcgcctggt tcctcatgca
    63841 acgatgcctc acccggttaa agatgttcgt gtgttgagcc gcatcaccac cgaagccttt
    63901 aaccagcgtc gtaaaaccat tcgtaacagc ctcggcaacc tgtttagcgt cgaggtgtta
    63961 acgggaatgg ggctcgaccc ggcgatgcga gcggaaaata tctctgtcgc gcaatattgc
    64021 cagatggcga actatctggc ggagaacgcg cctttgcagg agagttaacg atgatcaatt
    64081 cgccccgagt gtgtattcag gttcaaagcg tctacattga ggcacaatct tcacctgata
    64141 atgaacgtta cgtttttgct tataccgtaa ccatacgcaa tctggggcga gcgccagtgc
    64201 agttgttggg gcgttactgg ctgatcacca atggcaatgg ccgtgaaacc gaagtccagg
    64261 gcgaaggagt ggttggcgtc cagccactta tcgcgcctgg cgaagagtac cagtacacca
    64321 gcggtgcaat cattgaaacc ccgctgggca ccatgcaggg tcactacgaa atgatcgatg
    64381 aaaatggcgt ccctttcagc atcgacattc ccgtattccg actcgccgtt cccacactca
    64441 ttcattaaaa gaatatggcg acatacctta ttggcgacgt tcatggttgt tacgatgaac
    64501 tgatcgcatt gctgcataaa gtagaattta cccctgggaa agataccctc tggctgacgg
    64561 gcgatctggt cgcgcgcggc ccgggttcgc tggatgttct gcgctatgtg aaatccttag
    64621 gcgacagcgt acgtctggtg ctgggcaatc acgatctgca tctgctggcg gtatttgccg
    64681 ggatcagccg caataaaccg aaagatcgcc tgacaccgct gctggaagcg ccggatgccg
    64741 acgagctgct taactggctg cgtcgccagc ctttgctgca aatcgacgaa gagaaaaagt
    64801 tggtgatggc ccacgcaggg atcacgccgc agtgggatct acagaccgcc aaagagtgcg
    64861 cgcgcgatgt agaagcggtg ctatcgagtg actcctatcc cttctttctc gacgctatgt
    64921 acggcgatat gccaaataac tggtcaccgg aattgcgggg gctgggaaga ctgcgtttta
    64981 tcaccaacgc ctttacccgt atgcgttttt gcttcccgaa cggtcaactg gatatgtaca
    65041 gcaaagaatc gccggaagag gcccctgccc cactgaaacc gtggtttgcg attcctggcc
    65101 ctgtcgctga agaatacagc atcgcctttg gtcattgggc atcgctggag ggcaaaggta
    65161 cgccggaagg tatatacgcg ctggataccg gctgctgctg gggtggtaca ttaacctgcc
    65221 tgcgctggga agataaacag tattttgtcc agccgtcgaa ccggcataag gatttgggcg
    65281 aagcggcggc gtcttaaaca cagcctgata taggaaggcc ggataagacg cgaccggcgt
    65341 cgcatccggc actagccgta aattctatac aaaattaccg ccgctccaga atctcaaagc
    65401 aatagctgtg agagttctgc gcatcagcat cgtggaattc gctgaatacc gattcccagt
    65461 catccggctc gtaatccggg aaatgggtgt cgccttccac ttctgcgtcg atatgcgtca
    65521 gatacagttt ctgcgctttt ggcaggaact gctcataaac gcgaccgccg ccaatcacca
    65581 tgatttctgg tacgtcacca cacgccgcga tggcttcatc caccgacttc acccacgtta
    65641 cgcgatcgtc cgtacccggt tgactgctga ggataatatt tttgcgtcct ggcaacggac
    65701 gaccgattga ttcccaggta tggcggccca taatcacggg tttatttaag gtgttgcgtt
    65761 taaaccaggc gagatcggca ggcaggttcc acggcatggc gttttccatg ccgataacgc
    65821 gatctaccgc taacgccgca atcagactga tcattgagat ttcccgataa aaaaaattgt
    65881 cgccactata cgtaaagcgt aaaccgtcgt cgactggtgc gaggatgatg ttgaggaaaa
    65941 ttttatattc tgctggcgag tccacgctct ctccctggac tcgccgcatt acaatgaaac
    66001 aaaaacaaac agttagctgt aaagtgtgat ttacgtcact ctttattagg atgagggttt
    66061 cgtttccggt tcatccgcca tgttgccggt atgtttacct tcttcggttc cctgccagcc
    66121 atgtcgttga attaatgaca gatgttcgcg gtcctcggta atgatctcac ttaacatcgc
    66181 gctggtgcgt ttatagaccg ccgcgcgggc tttggtgtcg ttctcaacca ttgccatctc
    66241 ttccaccatc tgaatattaa agcggcggaa cacatcggca cgttctcgcg cttcatacgg
    66301 ccccagacct aaactttcca gtgccagacg cccggttttc agcgcacctt cgaaggtttc
    66361 acgctccggc ttttcaacgc ctgcctgacg caaacgaatg tagtggtcga catcgcgggc
    66421 gcgggcaata atctgcaaat gcgggaagtg ttctttcacc atctctgtca gttgcaggtt
    66481 ggtttgcgga tcgtcgatgg cgttaatcag cacttccgct ttcgccgctc ccgcagattc
    66541 cagtaaatcc atccgcgtgg catcgccata aaacactttc ataccaaatt tacgcaaggt
    66601 ttcgatatgg tccggatcgt gatcgagcac caccattttc accccgctgg agagcagtaa
    66661 acgtccggtg atctgcccaa aacgaccgaa tccggcaatg attacccgcg gctgttcttc
    66721 gtcgatctca tcggcttcac gcgcctcttc agtagaagat tgctcaaggc gattgaggat
    66781 caccagcaga atcggcgttg ccgccatcga cagcgccacc gccagggtca gcgatttcgc
    66841 ccactccggc tccagcacat tcgccatctg cgccgcgcca aataccacaa aggcaaactc
    66901 actgccctgc cctaacaaca ccgcaaacca acgacgctgt ttatttggca cttgcaacgg
    66961 tcgggcaatc agccacagca tggcgatttt gatgatgagg aaaccgagca gcaaaatgac
    67021 aatgcgcaat gggttttcaa gcagcgtgcc aaagtctatc gacatgccaa caccgatgaa
    67081 aaacagcccc aacagcaaac ctttaaaggg ttcgatatcg ctctccagcg catgacggta
    67141 ttccgagctt gccagcagta cgcccgccag aaatgcgccc atcgccatcg acaagccgac
    67201 ctcttccagc agcaaaccaa agccaaacac gaggaataac gccacggcac taaacacttc
    67261 ccgcaagcca gagcgggcta caaaacgcag cgccggacgc gtgacatagc gccccagcaa
    67321 taccaccagc accagcgcac ccgccacttt taacgccgag agagcaaatg cgcccatcgt
    67381 cgtcgaggca ctgctcgttg ccagtagcgg aatcatcgcc accagcggga tcgccgcgat
    67441 atcctggaac agcagcaccg caaaggcact gcgacccatt tgcgtcacca tcagattgcg
    67501 ttcattcatc gcctgcatgg caatcgccgt agaggagagc gccagcgtca tgccgatcaa
    67561 ttccgcgacc tgccagcgca gcccaagtaa catgcagaac agccccagca ggccgccgca
    67621 aatcaccatc tgcaatgcgc caccgccgaa cactgccgca cgcagcttcc acagcctttg
    67681 tggatcgagt tcgaggccga taataaacag catcagcacc accccaatct cggcaaagtg
    67741 cagaatagat tcggcatcgg tcaccagtcg cagcccccac gggccaataa tgcagccggc
    67801 gatcaggtag ccaagtaccg atcccagacc aagacgtacc gcaatgggta caatcagcgc
    67861 tgccgaaccg agataaatca gcgcctgaat cagcgtatgg ctatccatga tgggcctcct
    67921 gccattccag cagacgttgc ttatagtgac gcgcctgccc ttcgagggtt tcgtcgtcac
    67981 aaataaaggt gcagtgcatg gcaaacggtg gcagccagtt cagcccgcag tagattgccg
    68041 tcgcctgtag cggctgcgac agcacatcaa agcccggatg cgcaccaatt tcaaaatggc
    68101 tttccccgcc gccggtcgtc accgcccaca gcaaatgttt gccatgcagc gccttgccgc
    68161 cgtgaccgta agcccagccg tgcgacaaaa ctttatcgat ccaaagttta agaagcggag
    68221 gaatgctgta ccactgcatc ggatgctgcc agacgatcag atcggcgcga gacagcgcct
    68281 cctgctcggc ggcaatatcg atattgaagt caggatagag ttgataaaga gagcgaattt
    68341 cgacgccttc cagcgtcctt gcctgttcaa gcatccgttt attcgcatgg gaatgatgcg
    68401 gatacggatg cgcataaatt ataagaatca taggtagccc gcgtgattac gcctttgttt
    68461 tcccacaaag tgtagtcata tattcacgcg gcttatagtc aataatattg attcagaaaa
    68521 gagagaaatc tgaacaattt accccattct ctgcccgcgg atcgtcatat tgctggtttg
    68581 cgccagtgac atccctcgat gtctccgggg caaacgctac ggaaatcaac aagccaaaca
    68641 gcgagatacc cgcccccatt agcatcgtgt tactgatacc gtaattattg ataaagatcg
    68701 gcagtgccca ggtcgaaaca atggtgccaa tacggcttaa ggacataatc acgcccacgg
    68761 cagaggcgcg gatatctgtc gggaagagtt cattaggata gagccactgc aaattacccg
    68821 gcccgccaga gaaaaaggca tacaccgcaa aggccatcac taccagccag atccccatat
    68881 ccgggatcag ccccaaaacc gccagcgcca gcgtcatcat ggcaaagctg ccaatcaaca
    68941 atggacgccg tccggcagtg tttaaccaca gcatcggcgg aatacagccg agcataaaga
    69001 acaggctaat caccacgttc cccagcgccg cgtttttgcc aacacccaat cccaacaaac
    69061 caacgatttg cgggccaaag gtgtaaatgg cgaacattgg gatcacctgg caggtccaga
    69121 tggcggcaac aaacagaaca aaaggaaaat ggcggcgatt aaacagatcg cgaaaacggg
    69181 tttgctgcgg ctgctcttca tcgaaagcca ccggttcgcc aaacagtttt atcatcatct
    69241 cttcgcactc ttttactcgc cctttgcgta ataaccagcg gggagattca ggcagttcga
    69301 atcgaccaat caaaatcaac aaacagggga tcgccgcgct acccagcatc cagcgccagc
    69361 cgccttccac atcataaagc cagtagccga ccagatcggc gcaggtcacg ccgacatacc
    69421 acatggcggc gataaagctg atggaaaatg cccgctgacg ggtactggag aactcggtga
    69481 tcattgaggt ggcgatggga taatctgcac cgatgacaat gccgataagt acccgcatca
    69541 ccaacagttc gacgggggat gaaacaaaca tcgtcgccac cgatatcacg ccgatggcga
    69601 tgatatcaat gaggaacatt ttgcgccgtc cgactttatc ggaaatatag ccaaacagcg
    69661 atgtgccaac gaacagcccg gcgagcgttc ccgcgcccaa caagccaatc cagtcagcgt
    69721 ccagttttag cgccggagtc agttgctcca gcgccacgcc aatcattacc agtacataac
    69781 catcca
//
LOCUS       DADMHM010000003        66752 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.003, whole genome shotgun sequence.
ACCESSION   DADMHM010000003 DADMHM010000000
VERSION     DADMHM010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 66752)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 66752)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..66752
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.003"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..352)
                     /locus_tag="JN125_000152"
     CDS             complement(<1..352)
                     /locus_tag="JN125_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HAY8870058.1"
                     /translation="MSKKLGFALSGLMLAMVAGTASADMDGGQLNISGLVVDNTCETR
                     VDGGNKDGLILLQTATVGEIDAGVLNDTVGAKAKPFSITVDCSKANPNPGSTAKMTFG
                     SVFFGNSKGTLNNDM"
     gene            complement(722..1201)
                     /gene="folK"
                     /locus_tag="JN125_000153"
     CDS             complement(722..1201)
                     /gene="folK"
                     /locus_tag="JN125_000153"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HAY8870059.1"
                     /translation="MTVAYIAIGSNLASPLEQVNAALKALGDIPESHILAVSSFYRTP
                     PLGPQDQPDYLNASVALETSLAPEELLNHTQRIELQQDRVRKAERWGPRTLDLDIMLF
                     GNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELAFPDGETLREVLHTRAFDELSKW"
     gene            complement(1198..2616)
                     /gene="pcnB"
                     /locus_tag="JN125_000154"
     CDS             complement(1198..2616)
                     /gene="pcnB"
                     /locus_tag="JN125_000154"
                     /EC_number="2.7.7.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000174652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide adenylyltransferase PcnB"
                     /protein_id="HAY8870060.1"
                     /translation="MTLPRCTIFTRVANFCRKVLSREESEAEQAVARPQVTVIPREQH
                     AISRKDISENALKVMYRLNKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKL
                     FRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGS
                     IEEDAQRRDFTINSLYYSVADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLR
                     AVRFAAKLGMRISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEY
                     HLFQPLFPTITRYFTENGDSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLL
                     ETAQKIAQESGLTYHDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQG
                     KRAWKLLEHPKFRAAYDLLALRAEVERNAELQRLVKWWGEFQVSAPPDQKGMLNELDE
                     EPSPRRRTRRPRKRAPRREGTA"
     gene            complement(2655..3581)
                     /gene="gluQRS"
                     /locus_tag="JN125_000155"
     CDS             complement(2655..3581)
                     /gene="gluQRS"
                     /locus_tag="JN125_000155"
                     /EC_number="6.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414686.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA glutamyl-Q(34) synthetase GluQRS"
                     /protein_id="HAY8870061.1"
                     /translation="MLPPYFLFKEMTDTQYIGRFAPSPSGELHFGSLIAALGSYLQAR
                     ARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWL
                     HEQGLSYYCTCTRARIQSIVGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGII
                     HADEKLAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLF
                     GWKVPDYIHLPLALNPQGAKLSKQNHAPALPKGDPRPVLIAALQFLGQLAEAHWQDFS
                     VEQILQSAVKNWTLTAVPESAIVNSTFSNASC"
     gene            complement(3618..4073)
                     /locus_tag="JN125_000156"
     CDS             complement(3618..4073)
                     /locus_tag="JN125_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding transcription factor
                     DksA"
                     /protein_id="HAY8870062.1"
                     /translation="MQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRIL
                     EAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKT
                     LKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG"
     gene            complement(4251..4955)
                     /gene="sfsA"
                     /locus_tag="JN125_000157"
     CDS             complement(4251..4955)
                     /gene="sfsA"
                     /locus_tag="JN125_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA nuclease SfsA"
                     /protein_id="HAY8870063.1"
                     /translation="MEFSPPLQRATLIQRYKRFLADVITPDGRELTLHCPNTGAMTGC
                     ATRGDTVWYSTSDNTKRKYPHTWELTQSQSGAFICVNTLWANRLTKEAILNESISELS
                     GYSSLKSEVKYGAERSRIDFMLQADSRPDCYIEVKSVTLAENEQGYFPDAVTERGQKH
                     LRELMNVAAEGLRAVIFFAVLHSAITRFSPARHIDEKYAQLLSEAQQRGVEILAYKAE
                     ISAESMALKKSLPVTL"
     gene            complement(4970..5500)
                     /gene="thpR"
                     /locus_tag="JN125_000158"
     CDS             complement(4970..5500)
                     /gene="thpR"
                     /locus_tag="JN125_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414689.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2',3'-cyclic phosphodiesterase"
                     /protein_id="HAY8870064.1"
                     /translation="MSEPQRLFFAIDLPAEIREQIIHWRATHFPPEAGRPVAADNLHL
                     TLAFLGEVSAEKEKALSLLAGRIRQPGFTLTLDDAGQWLRSRVVWLGMRQPPRGLIQL
                     ANMLRSQAARSGCFQSNRPFHPHITLLRDASEAVTIPPPGFNWSYAVTEFTLYASSFA
                     RGRTRYTPLKRWALMQ"
     gene            5574..8003
                     /gene="hrpB"
                     /locus_tag="JN125_000159"
     CDS             5574..8003
                     /gene="hrpB"
                     /locus_tag="JN125_000159"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414690.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase HrpB"
                     /protein_id="HAY8870065.1"
                     /translation="MSSLPVAAVLPELLTALDCAPQVLLSAPTGAGKSTWLPLQLLAH
                     PGINGKIILLEPRRLAARNVAQRLEELLNEKPGDTVGYRMRAQNCVGPNTRLEVVTEG
                     VLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLD
                     NDRLQQMLPEASVVISEGRSFPVERRYLPLPAHQRFDDAVAVATAEMLRQESGSLLLF
                     LPGVGEIQRVQEQLASRIGSDVLLCPLYGALSLNDQRKAILPAPQGMRKVVLATNIAE
                     TSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQRAGRAGRLEPGICLH
                     LIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSWLDQPPTVNLLAAKRL
                     LQMLGALEGERLSAQGQKMAALGNDPRLAAMLVSAKNDDEAATAAKIAAILEEPPRMG
                     NSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLAGAFADRIARRRGQDG
                     RYQRANGMGAMLDADDALSRHEWLIAPLLLQGSASPDARILLALPVDIDELVQRCPQL
                     VQQSDTVEWDDAQGTLKAWRRLQIGLLTVKVQPLAKPSEDELHQAMLNGIRDKGLSVL
                     NWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLATLETWLLPHMTGVHSLRGLKSLD
                     IYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEATN
                     PTIAQGRVPLVLELLSPAQRPLQITRDLSAFWKGAYREVQKEMKGRYPKHVWPDDPAN
                     TAPTRRTKKYS"
     gene            8199..10721
                     /gene="mrcB"
                     /locus_tag="JN125_000160"
     CDS             8199..10721
                     /gene="mrcB"
                     /locus_tag="JN125_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glycosyl
                     transferase/transpeptidase"
                     /protein_id="HAY8870066.1"
                     /translation="MAGNDREPIGRKGKPTRPVKQKVSRRRYEDDDDYDDYDDYEDEE
                     PMPRKGKGKGKGRKPRGKRGWLWLLLKLAIVFAVLIAIYGVYLDQKIRSRIDGKVWQL
                     PAAVYGRMVNLEPDMTISKNEMVKLLEATQYRQVSKMTRPGEFTVQANSIEMIRRPFD
                     FPDSKEGQVRARLTFDGDHLATIVNMENNRQFGFFRLDPRLITMISSPNGEQRLFVPR
                     SGFPDLLVDTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNL
                     FLSSERSYWRKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYY
                     FGRPVEELSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQQIIDQELYD
                     MLSARPLGVQPRGGVISPQPAFMQLVRQELQAKLGDKVKDLSGVKIFTTFDSVAQDAA
                     EKAAVEGIPALKKQRKLSDLETAIVIVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSI
                     GSLAKPATYLTALSQPKIYRLNTWIADAPIALRQPNGQVWSPQNDDRRYSESGRVMLV
                     DALTRSMNVPTVNLGMALGLPAVTDTWIKLGVPKDQLHPVPAMLLGALNLTPIEVAQA
                     FQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGT
                     GRQLGAKYPNLHLAGKTGTTNNNVDTWFAGIDGSTVTITWVGRDNNQPTKLYGASGAM
                     SIYQRYLANQTPTPLNLVPPEDIADMGVDYDGNFVCSGGMRVLPVWTSDPQSLCQQSE
                     MQQQPSGNPFDQSSQPQQQPAQQEQKDSDGVAGWIKDMFGSN"
     gene            10941..13130
                     /gene="fhuA"
                     /locus_tag="JN125_000161"
     CDS             10941..13130
                     /gene="fhuA"
                     /locus_tag="JN125_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrichrome porin FhuA"
                     /protein_id="HAY8870067.1"
                     /translation="MARSKTAQPKHSLRKIAVVVATAVSGMSVYAQAAVEPKEDTITV
                     TAAPAPQESPWGPAATIAAKHSATATKTDTPIEKTPQSISVVTNEEMQMHQFQSVKEA
                     LGYTPGVTVSSRGASNTYDFVIIRGFSSVGLNQNNYLDGLKLQGNFYNDAVIDPYMLE
                     RVELMRGPTSVLYGKSNPGGIISMVSKRPTTEPLKEIQFKMGTDNLFQTGFDFSDALD
                     DNGEFSYRLTGLARSTNEQQKNSESQRYTIAPSFSWRPDDKTNFTFLSYFQNEPETGY
                     YGWLPKEGTVEPLPNGKRLPTDFNEGASNNTYSRNQKMVGYSFEHGFNDTFTVRQNLR
                     FSEMKTSQKSVYGTGIAGDGHTLNRGTVVDNERLQNFSVDTQLESKFATGDVEHTLLT
                     GVDFMRMRNDINASFGSAPSIDLYNKYHPEYFAFGSAEPYQMNESKQTGIYVQDQAEW
                     NKWVFTLGGRYDWSKQATTVRENSYTPTEGYIERNDHQFTWRGGVNYLFDNGISPYFS
                     YSQSFEPSAFDLWSNPRISYKPSKGEQYEAGVKYVPNDMPVVVTGAVYQLTKTNNLTA
                     DPTNPLAQVPAGEIRARGVELEAKAALNANINLTASYTYTDAEYTKDTNLKGKTPEQV
                     PEHMASLWGDYTFNEGPLSGLTLGTGGRFIGSSYGDPANTFKVGSAAVMDAVVKYDLA
                     RFGMAGSSLAVNVNNLLDREYVASCFQTYGCFWGAERQVVATATFRF"
     gene            13181..13978
                     /gene="fhuC"
                     /locus_tag="JN125_000162"
     CDS             13181..13978
                     /gene="fhuC"
                     /locus_tag="JN125_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe3+-hydroxamate ABC transporter ATP-binding
                     protein FhuC"
                     /protein_id="HAY8870068.1"
                     /translation="MQEYTNHSDTTFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIG
                     HNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPPAEGMTV
                     RELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAM
                     LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYL
                     VALRGGEMIAQGTPAEIMRGDTLEMIYGIPMGILPHPAGAAPVSFVY"
     gene            13978..14868
                     /gene="fhuD"
                     /locus_tag="JN125_000163"
     CDS             13978..14868
                     /gene="fhuD"
                     /locus_tag="JN125_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+)-hydroxamate ABC transporter
                     substrate-binding protein FhuD"
                     /protein_id="HAY8870069.1"
                     /translation="MSGLPLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWL
                     PVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVW
                     SAGYGPSAEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYED
                     FIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWG
                     STAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYG
                     ATLSAMHFVRVLDNAIGGKA"
     gene            14865..16847
                     /gene="fhuB"
                     /locus_tag="JN125_000164"
     CDS             14865..16847
                     /gene="fhuB"
                     /locus_tag="JN125_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+)-hydroxamate ABC transporter permease
                     FhuB"
                     /protein_id="HAY8870070.1"
                     /translation="MSKRIALFPALLLALLVIVATALTWMNFSQALPRSQWAQAAWSP
                     DIDVIEQMIFHYSLLPRLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLG
                     ITVTTLWAIPGAMASQFAALAGACVVGLIVFGVAWGKRLSPVTLILAGLVVSLYCGAI
                     NQLLVIFHHDQLQSMFLWSTGTLTQTDWGGVERLWPQLLGGVMLTLLLLRPLTLMGLD
                     DGVARNLGLALSLARLAALSLAIVISALLVNAVGIIGFIGLFAPLLAKMLGSRRLLPR
                     LMLASLIGALILWLSDQIILWLTRVWMEVSTGSVTALIGAPLLLWLLPRLRSISAPDM
                     KVNDRVAAERQHVLAFALAGGVLLLMAVVVALSFGRDAHGWMWASGALLDDLMPWRWP
                     RIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFGWL
                     LPAGSIGAAVTLLIIMIAAGRGGFSPHRMLLAGMALSTAFTMLLMMLQASGDPRMAQV
                     LTWISGSTYNATDAQVWRTGIVMVILLAITPLYRRWLTILPLGGDTARAVGMALTPTR
                     IALLLLAACLTATATMTIGPLSFVGLMAPHIARMMGFRRTMPHIVISALVGGLLLVFA
                     DWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRKQSR"
     gene            complement(16882..18162)
                     /gene="hemL"
                     /locus_tag="JN125_000165"
     CDS             complement(16882..18162)
                     /gene="hemL"
                     /locus_tag="JN125_000165"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HAY8870071.1"
                     /translation="MSKSENLYSAARELLPGGVNSPVRAFTGVGGTPLFIEKADGAYL
                     YDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAQLVTEL
                     VPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTL
                     GQPNSPGVPADFAKHTLTCTYNDLASVRAAFEQYPQEIACIIVEPVAGNMNCVPPQPE
                     FLPGLRALCDEFGTLLIIDEVMTGFRVALAGAQDYYGVVPDLTCLGKIIGGGMPVGAF
                     GGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGVHETLDELTTRLAEG
                     LLEAAEEAGTPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHMMLDEGVY
                     LAPSAFEAGFMSVAHSMEDINNTIDAARRVFAKL"
     gene            18387..19808
                     /gene="clcA"
                     /locus_tag="JN125_000166"
     CDS             18387..19808
                     /gene="clcA"
                     /locus_tag="JN125_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="H(+)/Cl(-) exchange transporter ClcA"
                     /protein_id="HAY8870072.1"
                     /translation="MKTDTPSLETPQAARLRRRQLIRQLLERDKTPLAILFMAAVVGT
                     LVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAP
                     EAGGSGIPEIEGALEDQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGR
                     MVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAV
                     FIGVIMSTIMYRIFNHEVALIDVGKLSDAPLNTQWLYLILGIIFGIFGPIFNKWVLGM
                     QDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLV
                     FIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVVVELFPQYHLEAGTFAIA
                     GMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILA
                     RTLAKQEAEQLARSKAASASENT"
     gene            19832..19897
                     /locus_tag="JN125_000167"
     CDS             19832..19897
                     /locus_tag="JN125_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870073.1"
                     /translation="MAIIIGLEFAQLPMSFGAKYE"
     gene            19890..20234
                     /gene="erpA"
                     /locus_tag="JN125_000168"
     CDS             19890..20234
                     /gene="erpA"
                     /locus_tag="JN125_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HAY8870074.1"
                     /translation="MSDDVALPLEFTDAAANKVKSLIADEDNPNLKLRVYITGGGCSG
                     FQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNA
                     KSTCGCGSSFSI"
     gene            complement(20281..20904)
                     /locus_tag="JN125_000169"
     CDS             complement(20281..20904)
                     /locus_tag="JN125_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRIC cation channel family protein"
                     /protein_id="HAY8870075.1"
                     /translation="MLVYWLDIVGTAVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGG
                     TIRDMALDHGPVFWVKDPTDLVVAMVTSMLTIVLVRQPRRLPKWMLPVLDAVGLAVFV
                     GIGVNKAFNAEAGPLIAVCMGVITGVGGGIIRDVLAREIPMILRTEIYATACIIGGIV
                     HATAYYTFSVPLETASMMGMVVTLLIRLAAIRWHLKLPTFALDENGR"
     gene            complement(20947..21741)
                     /gene="btuF"
                     /locus_tag="JN125_000170"
     CDS             complement(20947..21741)
                     /gene="btuF"
                     /locus_tag="JN125_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005024031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 ABC transporter substrate-binding
                     protein BtuF"
                     /protein_id="HAY8870076.1"
                     /translation="MAKSLFRALVALSFLAPLWLNAAPRVITLSPANTELAFAAGITP
                     VGVSSYSDYPPQAQKIEQVSTWQGMNLERIVALKPDLVIAWRGGNAERQVDQLASLGI
                     KVMWVDATSIEQIANALRQLAPWSPQPDKAEQAAQSLLDQYAQLKAQYAGKPKKRVFL
                     QFGINPPFTSGKESIQNQVLEVCGGENIFKDSRVPWPQVSREQVLARSPQAIVITGGP
                     DQIPKIKQYWGEQLKIPVIPLTSDWFDVQAHVLSSLHNSSVMRFHR"
     gene            complement(21734..22432)
                     /gene="mtnN"
                     /locus_tag="JN125_000171"
     CDS             complement(21734..22432)
                     /gene="mtnN"
                     /locus_tag="JN125_000171"
                     /EC_number="3.2.2.16"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/S-adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HAY8870077.1"
                     /translation="MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVA
                     LLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADV
                     TAFGYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAK
                     IRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQS
                     SLMVESLVQKLAHG"
     gene            22516..24033
                     /gene="dgt"
                     /locus_tag="JN125_000172"
     CDS             22516..24033
                     /gene="dgt"
                     /locus_tag="JN125_000172"
                     /EC_number="3.1.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dGTPase"
                     /protein_id="HAY8870078.1"
                     /translation="MAQIDFRKKINWHRRYRSPQGVKTEHEILRIFESDRGRIINSPA
                     IRRLQQKTQVFPLERNAAVRTRLTHSMEVQQVGRYIAKEILSRMKELKLLEAYGLDEL
                     TGPFESIVEMSCLMHDIGNPPFGHFGEAAINDWFRQRLHPEDAESQPLTDDRCSVAAL
                     RLRDGEEPLNELRRKIRQDLCHFEGNAQGIRLVHTLMRMNLTWAQVGGILKYTRPAWW
                     RGETPETHHYLMKKPGYYLSEEAYIARLRKELNLALYSRFPLTWIMEAADDISYCVAD
                     LEDAVEKRIFTVEQLYHHLHEAWGQHEKGSLFSLVVENAWEKSRSNSLSRSTEDQFFM
                     YLRVNTLNKLVPYAAQRFIDNLPAIFAGTFNHALLEDASECSDLLKLYKNVAVKHVFS
                     HPDVEQLELQGYRVISGLLEIYRPLLSLSLSDFTELVEKERVKRFPIESRLFHKLSTR
                     HRLAYVEAVSKLPSDYPEFPLWEYYYRCRLLQDYISGMTDLYAWDEYRRLMAVEQ"
     gene            24163..25587
                     /gene="degP"
                     /locus_tag="JN125_000173"
     CDS             24163..25587
                     /gene="degP"
                     /locus_tag="JN125_000173"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine endoprotease DegP"
                     /protein_id="HAY8870079.1"
                     /translation="MKKTTLALSALALSLGLALSPLSATAAETSSATTAQQMPSLAPM
                     LEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGN
                     GGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRS
                     DIALIQIQNPKNLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNA
                     ENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNL
                     TSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGD
                     VITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSS
                     IFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKV
                     LDSKPSVLALNIQRGDSTIYLLMQ"
     gene            25765..26895
                     /locus_tag="JN125_000174"
     CDS             25765..26895
                     /locus_tag="JN125_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CdaR family transcriptional regulator"
                     /protein_id="HAY8870080.1"
                     /translation="MAQDIVARTMRIIDTNINVMDARGRIIGSGDRERIGELHEGALL
                     VLSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPENLRKYGELVCMT
                     AEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALTEWAQRLGIDLNQPRVVAIV
                     EVDSGQLGVDSAMAELQQLQNALTTPERNNLVAIVSLTEMVVLKPALNSFGRWDAEDH
                     RKRVEQLITRMKEYGQLRFRVSLGNYFTGPGSIARSYRTAKTTMVVGKQRMPESRCYF
                     YQDLMLPVLLDSLRGDWQANELARPLARLKAMDNNGLLRRTLAAWFRHNVQPLATSKA
                     LFIHRNTLEYRLNCISELTGLDLGNFDDRLLLYVALQLDEER"
     gene            complement(26984..27370)
                     /locus_tag="JN125_000175"
     CDS             complement(26984..27370)
                     /locus_tag="JN125_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000272186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3461 family protein"
                     /protein_id="HAY8870081.1"
                     /translation="MYDNLKSLGITNPEEIDRYSLRQEANNDILKIYFQKDKGEFFAK
                     SVKFKYPRQRKTVVADGVGQGYKEVQEISPNLRYIIDELDQICQRDRSEVDLKRKILD
                     DLRHLESVVTNKISEIEADLEKLTRK"
     gene            complement(27532..28344)
                     /gene="yaeI"
                     /locus_tag="JN125_000176"
     CDS             complement(27532..28344)
                     /gene="yaeI"
                     /locus_tag="JN125_000176"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414706.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiesterase YaeI"
                     /protein_id="HAY8870082.1"
                     /translation="MISRRRLLQATAATIATSSGFGYMHYWEPGWFELIRHRLAFFKD
                     NAAPFKILFLADLHYSRFVPLSLISDAIALGIEQKPDLILLGGDYVLFDMPLNFSAFS
                     DVLSPLAECAPTFACFGNHDRPVGTEKNHLIGETLKSVGITVLFNQATVIATPNRQFE
                     LVGTGDLWAGQCKPPPASEANLPRLMLAHNPDSKEVMRDEPWDLMLCGHTHGGQLRVP
                     LVGEPFAPVEDKRYVAGLNAFGERHIYTTRGVGSLYGLRLNCRPEVTMLELV"
     gene            complement(28399..29223)
                     /gene="dapD"
                     /locus_tag="JN125_000177"
     CDS             complement(28399..29223)
                     /gene="dapD"
                     /locus_tag="JN125_000177"
                     /EC_number="2.3.1.117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-succinyltransferase"
                     /protein_id="HAY8870083.1"
                     /translation="MQQLQNIIETAFERRAEITPANADTVTREAVNQVISLLDSGALR
                     VAEKIDGQWVTHQWLKKAVLLSFRINDNQVIEGAESRYFDKVPMKFADYDEARFQKEG
                     FRVVPPAAVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSG
                     GVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYIGQSTRIYDRE
                     TGEIHYGRVPAGSVVVSGNLPSKDGKYSLYCAVIVKKVDAKTRGKVGINELLRTID"
     gene            complement(29254..31926)
                     /gene="glnD"
                     /locus_tag="JN125_000178"
     CDS             complement(29254..31926)
                     /gene="glnD"
                     /locus_tag="JN125_000178"
                     /EC_number="2.7.7.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     uridylyltransferase/uridylyl-removing protein GlnD"
                     /protein_id="HAY8870084.1"
                     /translation="MNTLPEQYANTALPTLPGQPQNPCVWPRDELTVGGIKAHIDTFQ
                     RWLGDAFDNGISAEQLIEARTEFIDQLLQRLWIEAGFSQIADLALVAVGGYGRGELHP
                     LSDIDLLILSRKKLPDDQAQKVGELLTLLWDVKLEVGHSVRTLEECMLEGLSDLTVAT
                     NLIESRLLIGDVALFLELQKHIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTSYNLEPD
                     IKSSPGGLRDIHTLQWVARRHFGATSLDEMVGFGFLTSAERAELNECLHILWRIRFAL
                     HLVVSRYDNRLLFDRQLSVAQRLNYSGEGNEPVERMMKDYFRVTRRVSELNQMLLQLF
                     DEAILALPADEKPRPIDDEFQLRGTLIDLRDETLFMRQPEAILRMFYTMVRNSAITGI
                     YSTTLRQLRHARRHLQQPLCNIPEARKLFLSILRHPGAVRRGLLPMHRHSVLGAYMPQ
                     WSHIVGQMQFDLFHAYTVDEHTIRVMLKLESFASEETRQRHPLCVDVWPRLPSTELIF
                     IAALFHDIAKGRGGDHSILGAQDVVHFAELHGLNSRETQLVAWLVRQHLLMSVTAQRR
                     DIQDPEVIKQFAEEVQTENRLRYLVCLTVADICATNETLWNSWKQSLLRELYFATEKQ
                     LRRGMQNTPDMRERVRHHQLQALALLRMDNIDEEALHQIWSRCRANYFVRHSPNQLAW
                     HARHLLQHDLSKPLVLLSPQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQI
                     FTTRDGMAMDTFIVLEPDGSPLSADRHEVIRFGLEQVLTQSSWQPPQPRRQPAKLRHF
                     TVETEVTFLPTHTDRKSFLELIALDQPGLLARVGKIFADLGISLHGARITTIGERVED
                     LFIIATADRRALNNELQQEVHQRLTEALNPNDKG"
     gene            complement(31988..32782)
                     /gene="map"
                     /locus_tag="JN125_000179"
     CDS             complement(31988..32782)
                     /gene="map"
                     /locus_tag="JN125_000179"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HAY8870085.1"
                     /translation="MAISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRI
                     CNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIK
                     DGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAE
                     GFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMK
                     DGWTVKTKDRSLSAQYEHTIVVTDNGCEILTLRKDDTIPAIISHDE"
     gene            33150..33875
                     /gene="rpsB"
                     /locus_tag="JN125_000180"
     CDS             33150..33875
                     /gene="rpsB"
                     /locus_tag="JN125_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HAY8870086.1"
                     /translation="MATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLE
                     KTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLT
                     NWKTVRQSIKRLKDLETQSQDGTFEKLTKKEALMRTRELEKLENSLGGIKDMGGLPDA
                     LFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVA
                     ATVREGRSQDLASQAEESFVEAE"
     gene            34133..34984
                     /gene="tsf"
                     /locus_tag="JN125_000181"
     CDS             34133..34984
                     /gene="tsf"
                     /locus_tag="JN125_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HAY8870087.1"
                     /translation="MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKS
                     GAIKAAKKAGNVAADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVA
                     GKITDVEVLKAQFEEERVALVAKIGENINIRRVAALEGDVLGSYQHGARIGVLVAAKG
                     ADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEG
                     RMKKFTGEVSLTGQPFVMEPSKTVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEV
                     AAMSKQS"
     gene            35131..35856
                     /gene="pyrH"
                     /locus_tag="JN125_000182"
     CDS             35131..35856
                     /gene="pyrH"
                     /locus_tag="JN125_000182"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000224576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HAY8870088.1"
                     /translation="MATNAKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKEL
                     VELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNA
                     RLMSAIPLNGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEADV
                     VLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVF
                     NMNKPGALRRVVMGEKEGTLITE"
     gene            36148..36705
                     /gene="frr"
                     /locus_tag="JN125_000183"
     CDS             36148..36705
                     /gene="frr"
                     /locus_tag="JN125_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000622421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HAY8870089.1"
                     /translation="MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEY
                     YGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPL
                     PPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDV
                     QKLTDAAIKKIEAALADKEAELMQF"
     gene            36797..37993
                     /gene="ispC"
                     /locus_tag="JN125_000184"
     CDS             36797..37993
                     /gene="ispC"
                     /locus_tag="JN125_000184"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HAY8870090.1"
                     /translation="MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVE
                     QCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIV
                     GAAGLLPTLAAIRAGKTILLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSL
                     PQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKI
                     SVDSATMMNKGLEYIEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDM
                     RTPIAHTMAWPNRVNSGVKPLDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTA
                     LNAANEITVAAFLAQQIRFTDIAALNLSVLEKMDMREPQCVDDVLSVDANAREVARKE
                     VMRLAS"
     gene            38182..38940
                     /gene="ispU"
                     /locus_tag="JN125_000185"
                     /gene_synonym="uppS"
     CDS             38182..38940
                     /gene="ispU"
                     /locus_tag="JN125_000185"
                     /gene_synonym="uppS"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308203.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2E,6E)-farnesyl-diphosphate-specific
                     ditrans,polycis-undecaprenyl-diphosphate synthase"
                     /protein_id="HAY8870091.1"
                     /translation="MLSATQPLSEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKA
                     GAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRH
                     NVRLRIIGDTSRFNSRLQECIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEK
                     VQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDV
                     LWPDFDEQDFEGALNAFANRERRFGGTEPGDETA"
     gene            38953..39810
                     /gene="cdsA"
                     /locus_tag="JN125_000186"
     CDS             38953..39810
                     /gene="cdsA"
                     /locus_tag="JN125_000186"
                     /EC_number="2.7.7.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414717.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HAY8870092.1"
                     /translation="MLKYRLISAFVLIPVVIAALFLLPPVGFAIVTLVVCMLAAWEWG
                     QLSGFTTRSQRVWLAVLCGLLLALMLFLLPEYHRNIHQPLVEISLWASLGWWIVALLL
                     VLFYPGSAAIWRNSKTLRLIFGVLTIVPFFWGMLALRAWHYDENHYSGAIWLLYVMIL
                     VWGADSGAYMFGKLFGKHKLAPKVSPGKTWQGFIGGLATAAVISWGYGMWANLDVAPV
                     TLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFAC
                     LLLLVFRTL"
     gene            39822..41174
                     /gene="rseP"
                     /locus_tag="JN125_000187"
     CDS             39822..41174
                     /gene="rseP"
                     /locus_tag="JN125_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma E protease regulator RseP"
                     /protein_id="HAY8870093.1"
                     /translation="MLSFLWDLASFIVALGVLITVHEFGHFWVARRCGVRVERFSIGF
                     GKALWRRTDKLGTEYVIALIPLGGYVKMLDERAEPVVPELRHHAFNNKSVGQRAAIIA
                     AGPVANFIFAIFAYWLVFIIGVPGVRPVVGEMAANSIAAEAQIAPGTELKAVDGIETP
                     DWDAVRLQLVDKIGDESTTITVAPFGSDQRRDVKLDLRHWAFEPDKEDPVSSLGIRPR
                     GLQIEPVLENVQPNSAASKAGLQAGDRIVKVDGQPLTQWVTFVMLVRDNPGKSLALEI
                     ERQGSPLSLTLIPESKPGNGKAIGFVGIEPKVIPLPDEYKVVRQYGPFNAIVEATDKT
                     WQLMKLTVSMLGKLITGDVKLNNLSGPISIAKGAGMTAELGVVYYLPFLALISVNLGI
                     INLFPLPVLDGAHLLFLAIEKIKGGPVSERVQDFCYRIGSILLVLLMGLALFNDFSRL
                     "
     gene            41204..43636
                     /gene="bamA"
                     /locus_tag="JN125_000188"
     CDS             41204..43636
                     /gene="bamA"
                     /locus_tag="JN125_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HAY8870094.1"
                     /translation="MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALL
                     SMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGN
                     KSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPR
                     NRVDLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQK
                     LAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGN
                     LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKT
                     VKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRL
                     GFFETVDTDTQRVPGSPDQVDVVYKVKERNTGSFNFGIGYGTESGVSFQAGVQQDNWL
                     GTGYAVGINGTKNDYQTYAELSVTNPYFTVDGVSLGGRLFYNDFQADDADLSDYTNKS
                     YGTDVTLGFPINEYNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGEHPSTSDQDNSFK
                     TDDFTFNYGWTYNKLDRGYFPTDGSRVNLTGKVTIPGSDNEYYKVTLDTATYVPIDDD
                     HKWVVLGRTRWGYGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYFPHQASNY
                     DPDYDYECATQDGAKDLCKSDDAVGGNAMAVASLEFITPTPFISDKYANSVRTSFFWD
                     MGTVWDTNWDSSQYSGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDK
                     AEQFQFNIGKTW"
     gene            43758..44243
                     /gene="skp"
                     /locus_tag="JN125_000189"
                     /gene_synonym="hlpA"
                     /gene_synonym="ompH"
     CDS             43758..44243
                     /gene="skp"
                     /locus_tag="JN125_000189"
                     /gene_synonym="hlpA"
                     /gene_synonym="ompH"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone Skp"
                     /protein_id="HAY8870095.1"
                     /translation="MKKWLLAAGLGLALATSAQAADKIAIVNMGSLFQQVAQKTGVSN
                     TLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFE
                     QDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQV
                     K"
     gene            44247..45272
                     /gene="lpxD"
                     /locus_tag="JN125_000190"
     CDS             44247..45272
                     /gene="lpxD"
                     /locus_tag="JN125_000190"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HAY8870096.1"
                     /translation="MPSIRLADLAQQLDAELHGDGDIVITGVASMQSAQTGHITFMVN
                     PKYREHLGLCQASAVVMTQDDLPFAKSAALVVKNPYLTYARMAQILDTTPQPAQNIAP
                     SAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTI
                     YHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRG
                     ALDDTVIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGH
                     MEICDKVTVTGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAALVMNIDDMSKRLKSLE
                     RKVNQQD"
     gene            45377..45832
                     /gene="fabZ"
                     /locus_tag="JN125_000191"
     CDS             45377..45832
                     /gene="fabZ"
                     /locus_tag="JN125_000191"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000210741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HAY8870097.1"
                     /translation="MTTNTHTLQIEEILELLPHRFPFLLVDRVLDFEEGRFLRAVKNV
                     SVNEPFFQGHFPGKPIFPGVLILEAMAQATGILAFKSVGKLEPGELYYFAGIDEARFK
                     RPVVPGDQMIMEVTFEKTRRGLTRFKGVALVDGKVVCEATMMCARSREA"
     gene            45836..46624
                     /gene="lpxA"
                     /locus_tag="JN125_000192"
     CDS             45836..46624
                     /gene="lpxA"
                     /locus_tag="JN125_000192"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HAY8870098.1"
                     /translation="MIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVGIGEGTVL
                     KSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGT
                     VQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVH
                     QFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFSREAITAIRNA
                     YKLIYRSGKTLDEVKPEIAELAETYPEVKAFTDFFSRSTRGLIR"
     gene            46624..47772
                     /gene="lpxB"
                     /locus_tag="JN125_000193"
     CDS             46624..47772
                     /gene="lpxB"
                     /locus_tag="JN125_000193"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HAY8870099.1"
                     /translation="MTEQRPLTIALVAGETSGDILGAGLIRALKERVPNARFVGVAGP
                     RMQAEGCEAWYEMEELAVMGIVEVLGRLRRLLHIRADLTKRFGELKPDVFVGIDAPDF
                     NITLEGNLKKQGIKTIHYVSPSVWAWRQKRVFKIGRATDLVLAFLPFEKAFYDKYNVP
                     CRFIGHTMADAMPLDPDKNAARDVLGIPHDAHCLALLPGSRGAEVEMLSADFLKTAQL
                     LRQTYPDLEIVVPLVNAKRREQFERIKAEVAPDFSVHLLDGMGREAMVASDAALLASG
                     TAALECMLAKCPMVVGYRMKPFTFWLAKRLVKTDYVSLPNLLAGRELVKELLQEECEP
                     QKLAAALLPLLANGKISHAMHDTFRELHQQIRCNADEQAAQAVLELAQ"
     gene            47769..48365
                     /gene="rnhB"
                     /locus_tag="JN125_000194"
     CDS             47769..48365
                     /gene="rnhB"
                     /locus_tag="JN125_000194"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HAY8870100.1"
                     /translation="MIEFVYPHTQLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLN
                     DSKKLSEKRRLALCEEIKEKALSWSLGRAEPHEIDELNILHATMLAMQRAVAGLHIAP
                     EYVLIDGNRCPKLPMPAMAVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYGFA
                     QHKGYPTAFHLEKLAEHGATEHHRRSFGPVKRALGLAS"
     gene            48402..51884
                     /gene="dnaE"
                     /locus_tag="JN125_000195"
     CDS             48402..51884
                     /gene="dnaE"
                     /locus_tag="JN125_000195"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HAY8870101.1"
                     /translation="MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDF
                     TNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLIS
                     KAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEE
                     HFPDRYFLELIRTGRLDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVA
                     IHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEY
                     FLPQFPTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQ
                     MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFL
                     NPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLG
                     HPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNA
                     GKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIIN
                     WALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQ
                     PDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKPVLEPTYG
                     IILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAEL
                     AMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVV
                     GLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKG
                     GYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAK
                     AEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKE
                     IERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVML
                     FTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYASGLAISL
                     TDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDL
                     RGLIGSEQVELEFD"
     gene            51897..52856
                     /gene="accA"
                     /locus_tag="JN125_000196"
     CDS             51897..52856
                     /gene="accA"
                     /locus_tag="JN125_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HAY8870102.1"
                     /translation="MSLNFLDFEQPIAELEAKIDSLTAVSRQDEKLDINIDEEVHRLR
                     EKSVELTRKIFADLGAWQIAQLARHLQRPYTLDYVRLAFDEFDELAGDRAYADDKAIV
                     GGIARLDGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITF
                     IDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVN
                     MLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIAPRLKELKLIDSIIPEPLGGAH
                     RNPEAMAASLKAQLLADLADLDVLSTEDLKNRRYQRLMSYGYA"
     gene            52955..55096
                     /gene="ldcC"
                     /locus_tag="JN125_000197"
     CDS             52955..55096
                     /gene="ldcC"
                     /locus_tag="JN125_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine decarboxylase LdcC"
                     /protein_id="HAY8870103.1"
                     /translation="MNIIAIMGPHGVFYKDEPIKELESALVAQGFQIIWPQNSVDLLK
                     FIEHNPRICGVIFDWDEYSLDLCSDINQLNEYLPLYAFINTHSTMDVSVQDMRMALWF
                     FEYALGQAEDIAIRMRQYTNEYLDNITPPFTKALFTYVKERKYTFCTPGHMGGTAYQK
                     SPVGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYIVTN
                     GTSTSNKIVGMYAAPSGSTLLIDRNCHKSLAHLLMMNDVVPVWLKPTRNALGILGGIP
                     HREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLYNTDWIKQTLDVPSIHFDSAWV
                     PYTHFHPIYQGKSGMSGERVAGKVIFETQSTHKMLAALSQASLIHIKGEYDEEAFNEA
                     FMMHTTTSPSYPIVASVETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWF
                     FDIWQPPQVDEAECWPVAPGEQWHGFNDADADHMFLDPVKVTILTPGMDEQGNMSEEG
                     IPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFKRSYDLNLRI
                     KNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRKHDLPGLMLWAFDTLPEMIMTPHQAW
                     QRQIKGEVETIALEQLVGRVSANMILPYPPGVPLLMPGEMLTKESRTVLDFLLMLCSV
                     GQHYPGFETDIHGAKQDEDGVYRVRVLKMAG"
     gene            55153..55542
                     /locus_tag="JN125_000198"
     CDS             55153..55542
                     /locus_tag="JN125_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308216.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HAY8870104.1"
                     /translation="MLGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSEVYREARDSW
                     KGDLALNGQYVIELFSFPFPPERPSRPEACGLRHLAFSVDDIDAAVAHLESHNVKCEA
                     IRVDPYTQKRFTFFNDPDGLPLELYEQ"
     gene            55607..56905
                     /gene="tilS"
                     /locus_tag="JN125_000199"
     CDS             55607..56905
                     /gene="tilS"
                     /locus_tag="JN125_000199"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HAY8870105.1"
                     /translation="MTLTLNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVTL
                     RAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFA
                     RTLLPGEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSEFAGTRLIRPLLARTR
                     GELAQWALAHGLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSAALCAE
                     QESLLDELLADDLAHCQTSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALV
                     RIWQEVALAREDASPCLRLGAFEIRRYQSQLWWIKSVTGQSETIVPWQTWLQPLELPA
                     GLGSVQLTAGGDIRPPRADEAVSVRFKSAGLLHIVGRNGGRKLKKIWQELGVPPWLRD
                     TTPLLFYGETLIAAAGVFVTQEGVAEGENGVSFVWQKTLS"
     gene            complement(56954..57214)
                     /gene="rof"
                     /locus_tag="JN125_000200"
     CDS             complement(56954..57214)
                     /gene="rof"
                     /locus_tag="JN125_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rho-binding antiterminator"
                     /protein_id="HAY8870106.1"
                     /translation="MSMNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASD
                     LVSRKNVEYLVVEAAGETRELRLDKITSFSHPEIGTVVVSES"
     gene            complement(57201..57401)
                     /locus_tag="JN125_000201"
     CDS             complement(57201..57401)
                     /locus_tag="JN125_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaeP family protein"
                     /protein_id="HAY8870107.1"
                     /translation="MEKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNEMAADDALS
                     EAVREKAAYAAANLLVSDYVNE"
     gene            57567..58112
                     /locus_tag="JN125_000202"
     CDS             57567..58112
                     /locus_tag="JN125_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaeQ family protein"
                     /protein_id="HAY8870108.1"
                     /translation="MALKATIYKATVNVADLDRNQFLDASLTLARHPSETQERMMLRL
                     LAWLKYADERLQFTRGLCADDEPEAWLRNDHLGIDLWIELALPDERRIKKACTQAAEV
                     ALFTYNSRAAQIWWQQNQSKCVQFANLSVWYLDDEQLAKVSAFADRTMTLQATIQDGV
                     IWLSDDKNNLEVNLTAWQQPS"
     gene            58109..58531
                     /gene="arfB"
                     /locus_tag="JN125_000203"
     CDS             58109..58531
                     /gene="arfB"
                     /locus_tag="JN125_000203"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HAY8870109.1"
                     /translation="MIVISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIR
                     ASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREAALARLVAVIKDLTTEQ
                     KARRPTRPTRASKERRLASKAQKSSVKAMRGKVRSGRE"
     gene            58545..59255
                     /gene="nlpE"
                     /locus_tag="JN125_000204"
                     /gene_synonym="cutF"
     CDS             58545..59255
                     /gene="nlpE"
                     /locus_tag="JN125_000204"
                     /gene_synonym="cutF"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308221.1"
                     /note="NlpE, an outer membrane lipoprotein, interacts
                     directly with CpxA, the sensor histidine kinase of the Cpx
                     system for response to envelope stress; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response activation lipoprotein
                     NlpE"
                     /protein_id="HAY8870110.1"
                     /translation="MVKKAIVTAMAVISLFTLMGCNNRAEVDTLSPAQAAELKPMPQS
                     WRGVLPCADCEGIETSLFLEKDGTWVMNERYLGAREEPSSFASYGTWARTADKLVLTD
                     SKGEKSYYRAKGDALEMLDREGNPIESQFNYTLEPAQSSLPMTPMTLRGMYFYMADAA
                     TFTDCATGKRFMVANNAELERGYLAARGHSEKPVLLSVEGHFTLEANPDTGAPTKVLA
                     PDTAGKFYPNKDCSSLGQ"
     gene            complement(59455..60279)
                     /locus_tag="JN125_000205"
     CDS             complement(59455..60279)
                     /locus_tag="JN125_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414735.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaeF family permuted papain-like enzyme"
                     /protein_id="HAY8870111.1"
                     /translation="MDKPKAYCRLLLPSFLLLSACTVDISQPDPSATAVDAEAKTWAV
                     KFQHQSSFTEQSIKEITAPDLKPGDLLFSSSLGVTSFGIRVFSTSSVSHVAIFLGDNN
                     VAEATGAGVQIVSLKKAMKHSDKLFVLRVPDLTPQQATDITAFANKIKDSGYNYRGIV
                     EFIPFMVTRQMCSLNPFSEDFRQQCVSGLAKAQLSSVGEGDKKSWFCSEFVTDAFAKA
                     GHPLTLAQSGWISPADLMHMRIGDVSAFKPETQLQYVGHLKPGIYIKAGRFVGLTR"
     gene            complement(60332..62050)
                     /gene="proS"
                     /locus_tag="JN125_000206"
     CDS             complement(60332..62050)
                     /gene="proS"
                     /locus_tag="JN125_000206"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HAY8870112.1"
                     /translation="MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLP
                     TGVRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGER
                     PFVLGPTHEEVITDLIRNELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDA
                     YSFHTSQESLQETYDAMYAAYSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGE
                     DDVVFSDTSDYAANIELAEAIAPKEPRAAATQEMTLVDTPNAKTIAELVEQFNLPIEK
                     TVKTLLVKAVEGSSFPLVALLVRGDHELNEVKAEKLPQVASPLTFATEEEIRAVVKAG
                     PGSLGPVNMPIPVVIDRTVAAMSDFAAGANIDGKHYFGINWDRDVATPEVADIRNVVA
                     GDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCYGIGVTR
                     VVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQGIEVL
                     LDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVEYL
                     VKQIKG"
     gene            complement(62161..62868)
                     /gene="tsaA"
                     /locus_tag="JN125_000207"
     CDS             complement(62161..62868)
                     /gene="tsaA"
                     /locus_tag="JN125_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase
                     TrmO"
                     /protein_id="HAY8870113.1"
                     /translation="MSSFQFEQIGVIRSPYKEKFAVPRQPGLVKSANGELHLIAPYNQ
                     ADAVRGLEAFSHLWILFVFHQTMEGGWRPTVRPPRLGGNARMGVFATRSTFRPNPIGM
                     SLVELKEVVCHKDSVILKLGSLDLVDGTPVVDIKPYLPFAESLPDASASYAQSAPAAE
                     MAVSFTAEVENQLLTLEKRYPQLTLFIREVLAQDPRPAYHKGEETGKTYAVWLHDFNV
                     RWRVTDAGFEVFALEPR"
     gene            complement(62865..63269)
                     /gene="rcsF"
                     /locus_tag="JN125_000208"
     CDS             complement(62865..63269)
                     /gene="rcsF"
                     /locus_tag="JN125_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rcs stress response system protein RcsF"
                     /protein_id="HAY8870114.1"
                     /translation="MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAP
                     RATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKRMQINASKMKAN
                     AVLLHSCEVTSGTPGCYRQAVCIGSALNITAK"
     gene            complement(63387..64202)
                     /gene="metQ"
                     /locus_tag="JN125_000209"
     CDS             complement(63387..64202)
                     /gene="metQ"
                     /locus_tag="JN125_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter substrate-binding
                     lipoprotein MetQ"
                     /protein_id="HAY8870115.1"
                     /translation="MAFKFKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQ
                     VAEVAQKVAKDKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYK
                     LVAVGNTFVYPIAGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDG
                     VGLLPTVLDVVENPKNLKIVELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGI
                     FVEDKDSPYVNLIVTREDNKDAENVKKFVQAYQSDEVYEAANKVFNGGAVKGW"
     gene            complement(64242..64895)
                     /gene="metI"
                     /locus_tag="JN125_000210"
     CDS             complement(64242..64895)
                     /gene="metI"
                     /locus_tag="JN125_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter permease MetI"
                     /protein_id="HAY8870116.1"
                     /translation="MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPG
                     QIIANAKLYRTVSAIVNIFRSIPFIILLVWTIPFTRVIVGTSIGLQAAIVPLTVGAAP
                     FIARMVENALLEIPTGLIEASRAMGATPMQIVRKVLLPEALPGLVNAATITLITLVGY
                     SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK"
     gene            complement(64888..65919)
                     /gene="metN"
                     /locus_tag="JN125_000211"
     CDS             complement(64888..65919)
                     /gene="metN"
                     /locus_tag="JN125_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014168731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein
                     MetN"
                     /protein_id="HAY8870117.1"
                     /translation="MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGK
                     STLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGN
                     VALPLELDNTPKDEIKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK
                     VLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE
                     LIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQERLQAEPFTDCVPMLRLEFTGQ
                     SVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHH
                     VKVEVLGYV"
     gene            66107..66679
                     /gene="gmhB"
                     /locus_tag="JN125_000212"
     CDS             66107..66679
                     /gene="gmhB"
                     /locus_tag="JN125_000212"
                     /EC_number="3.1.3.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001520530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose 1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HAY8870118.1"
                     /translation="MAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKK
                     MGFVLVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEE
                     FRQVCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAAAANVGTKVLVRTGKP
                     ITSEAENAADWVLNSLADLPQAIKKQQKPV"
BASE COUNT        15886 a        16511 c        18282 g        16073 t
ORIGIN      
        1 acatgtcgtt gttcagcgtt cctttgctat taccaaagaa aacagaaccg aaggtcattt
       61 tagctgtact acctggattc ggatttgctt tgctgcagtc aacggtgatg ctgaaaggtt
      121 tggctttagc gccaacggtg tcattcagca cgccagcatc gatttcacca acagttgcag
      181 tttgcagcag gatcagacca tctttattac cgccgtcaac gcgggtttca caggtgttat
      241 caacaaccag accactgata tttaactgac caccatccat atcagcagaa gcagtacctg
      301 caaccattgc cagcataaga ccagacaggg caaaacctaa ttttttagac ataaaaatcc
      361 ttgaataaaa ttccattagt cagactactg gtttgaagaa tgactattca tgacacaaat
      421 gttataagca gatgctagat attaatgagt aatgatattt gttaccaaaa tttacagcta
      481 ttgttcatta ggacgcctat tgtgcacttt aagggctttt gaacaaatta aattttctta
      541 attcaaaatt aagcaaaaat aaattcacaa gtgcaattgg ttagggtatg gcgatgggat
      601 tgatatttat ctgcgggaat ttatattatg tttctgcaaa aatgtttaaa ctaaaatttt
      661 tattaaggaa agagaggatg tatgattttc agaaaatatt tatattcgta atataaataa
      721 attaccattt gcttaattcg tcaaatgctc ttgtatgtaa gacttcacgc aacgtctccc
      781 catcaggaaa cgccagctcc ggtgcaatct caaacagcgg ccacagcata aatccacgat
      841 tcttcatatc gtagtgcgga acggtcaggc gttcggtatt tatcacttca ttaccaaaca
      901 gcatgatatc gagatccagc gtgcgtggtc cccagcgttc agctttacga acacgatcct
      961 gttgcagttc tatgcgctgt gtatggttga gtaactcttc cggggcgagc gaagtttcaa
     1021 gcgccacgga ggcgttgagg taatcgggtt gatcttgcgg ccccagcggt ggagtgcggt
     1081 aaaacgaaga aacggcaaga atgtggcttt cagggatatc gcctaatgct ttcagggcag
     1141 cattgacctg ctccagcgga gaggccagat tgctgcctat ggcaatatac gccactgtca
     1201 tgcggtaccc tcacgacgcg gtgcgcgttt gcgtggacga cgagtacggc gacgcggtga
     1261 cggctcttca tccaactcgt taagcatccc tttttgatct ggtggcgcgg aaacctggaa
     1321 ctcaccccac catttcacca gacgctgcag ttcagcgtta cgttcaactt cagctcgcaa
     1381 ggccaacagg tcataagccg cacggaactt aggatgctcc agcagtttcc atgcgcgttt
     1441 accctgacga cgggacatac gcaactgcaa ctgccagata tcgcgggtta acgtcgtcag
     1501 acgtttcggg attgccagtg aacggcaggc ttcgtccagc acgtcgttca tcgccagcgc
     1561 gaaagcgtcg tgataggtca ggccgctttc ctgggcgatc ttctgtgccg tctccagcag
     1621 tgggtaccag aacatggcgg caaacaagaa cgccgggttc acgcgcatat cgttatggat
     1681 acgcgtatcg gtattcttca gcacctgttc aatgatccgc tccatcgggc tgtcgccatt
     1741 ttccgtgaag tagcgggtaa tggtcgggaa cagcggctgg aacagatgat attcacacaa
     1801 cagcttatag gtttcgtaac cgtagcccgc ttgtagcagt ttaagcgatt cttcaaacag
     1861 gcgtgccggt gggatatcgt tcagcagggt agcgaggcga gggatcggtt ctgcggtttc
     1921 cgggctgatg cgcataccca atttggcggc aaaacgtacc gcgcgcagca tacgtaccgg
     1981 atcttcacgg tagcgcgttt ccgggttacc aatcagacgg ataacgccgt ccttcagatc
     2041 cttcatgccg ccaacgtaat cacggacggt aaaatccgct acgctgtaat acaggctgtt
     2101 gatagtgaaa tcgcggcgct gggcgtcttc ttcgatggag ccgaaaatgt tgtcgcgcag
     2161 caacatgccg ttttgcccgc gttgggaggt cgtgcggtcg ctgacgttac cttcgtggtg
     2221 tccacggaag gttgcaactt cgataatctc cgggccaaac atcacatgag ccagacggaa
     2281 acggcgaccc acaaggcggc agttacggaa cagtttgcgc acctgctcag gcgtggcgtt
     2341 agtggttacg tcaaaatctt tcggcttttt gccaagtaac aggtcgcgca cgccgccgcc
     2401 aaccagccag gcttcgtatc ccgctttatt gagcctgtac attaccttca gggcattttc
     2461 actgatatct ttgcgggaaa tagcatgctg ctcacgcggg atcaccgtca cctgtggacg
     2521 ggcgactgcc tgttcagcct cgctttcctc gcggcttagc accttgcggc aaaaattagc
     2581 gactcgggta aaaatagtac acctcggtag tgtcaaacat cattcaggac aaaaaaatag
     2641 cggctaatca tagctcagca tgacgcattt gagaatgttg aatttacaat tgccgactcg
     2701 ggcacggcgg tcagcgtcca gtttttgacg gctgactgaa ggatttgctc gacgctgaaa
     2761 tcctgccagt gtgcttctgc cagctgcccc agaaattgaa gtgccgcgat tagtaccggg
     2821 cgtggatcgc ctttcggcaa cgcaggcgca tgattctgct tggaaagttt agcgccttgt
     2881 ggattaagcg ccagcggcag atgaatgtaa tctggcactt tccagccaaa aagctggtac
     2941 agcgagattt gccttactgt tggttcaatc agatcagccc cacgcactat ttctgtaacg
     3001 ccctggaaat gatcatcaac cacaacagcc aggttgtagg cgaacaaccc atcacggcga
     3061 tgaatgataa aatcttcccg tgccagtttt tcgtcggcgt gaataatgcc gcgcagctgg
     3121 tcagtaaatt gcgtgaccgg atgctgctgg cggatacgca ctgcggcgtt gtctggtcca
     3181 tgatgcaaca cccggcaatg accgtcgtaa ataccgacaa tgctttgaat acgcgcacgc
     3241 gtacaggtgc agtaataact tagtccttgt tcatgtaacc aggcgagtgc ttcacgatag
     3301 gcgtcgtgac gttgcgattg ccagagaaca tcgccgtccc agtgcagacc gtaatgttcc
     3361 agctggcgca ggatagtttc tgcggcaccg ggaacttcac gaggcgggtc gatatcttct
     3421 atgcgtacca gccagcgacc ttgccgggcg cgagcctgca aatagctgcc gagcgcggcg
     3481 atcagagagc caaaatgaag ctcgccggaa ggagaggggg cgaagcggcc aatatactgt
     3541 gtgtctgtca tctctttgaa caaaaaataa ggcgggagca tttcccgcct gtggtaaacg
     3601 tgatggaacg gctgtaatta gccagccatc tgtttttcgc gaatttcagc cagcgttttg
     3661 cagtcgatgc acagatcggc tgtcgggcgc gcttccagac ggcgaatacc aatttcaaca
     3721 ccgcaggatt cgcagtagcc gaaatcttcg tcttccactt ttttcagcgt cttctcgatc
     3781 tttttgatca gcttacgctc gcgatcgcgg ttacgcagtt cgaggctgaa ctcttcttcc
     3841 tgggctgcac ggtctaccgg gtccgggaag ttggctgctt catcctgcat atgtgtaacg
     3901 gtgcgatcga cttcatccct gagttgatta cgccatgctt ccagaatacg acggaagtgc
     3961 gccagctggg cttcattcat atactcttcg cccggcttct cctgatatgg ttccacccca
     4021 gcgatggcga gaatactcag ggacgatgtt ttacggtttt gcccttcttg catgttgctt
     4081 ctccttaaca cgcactatcg atccccatgt tcgggggaaa aatgaggccg ctataaatag
     4141 cagatgcttt tccggatagc aattatctaa acgtaacact tgacaactgt gtgaggaaaa
     4201 gcgtatttgc gcacgcgacc agaatgtaaa ttaaccagtt acttacttta ctacaatgta
     4261 accggcagtg attttttaag agccatgctt tcagcagaaa tttccgcttt gtaagccaga
     4321 atttctaccc ccctctgttg agcttctgac aatagttgcg cgtatttctc atcgatgtgg
     4381 cgcgcgggtg aaaaccgtgt aatggctgaa tgcagcacgg cgaaaaagat aaccgcacgc
     4441 aggccttcag ccgctacgtt catcaactcc cgaaggtgtt tctgacctcg ttcagtgacc
     4501 gcatcgggaa aatatccctg ttcgttctcc gctaacgtaa ccgatttcac ttcaatatag
     4561 cagtctggac gcgaatccgc ctgcaacata aagtcaatac ggctgcgttc tgcgccatat
     4621 tttacttcgc ttttcagcga gctatagcct gacagttctg aaattgattc attaaggata
     4681 gcctctttcg tcaacctgtt agcccaaagc gtattgacgc aaataaatgc gccgctctgg
     4741 ctttgagtta gttcccaggt gtgtgggtat ttccgtttgg tgttgtctga agtcgaatac
     4801 cagacggtat cgccacgcgt tgcacaaccg gtcatcgcac ccgtattcgg gcagtgtagc
     4861 gttaattcgc gaccatcggg tgtgatcaca tcggctaaaa aacgtttgta acgctgaatt
     4921 agcgtcgcgc gctgtagagg gggagagaat tccattgcga caatccttgt tattgcatta
     4981 gcgcccagcg ttttagcggc gtgtagcgtg tgcgtccacg ggcaaacgag gaggcgtaaa
     5041 gggtgaactc cgtcaccgca taagaccagt taaaacctgg cggcgggatt gtcaccgcct
     5101 cgctggcgtc gcgcaataag gtaatatgtg gatgaaacgg acgattgctt tgaaaacaac
     5161 cgctgcgggc agcctgtgaa cggagcatat tcgccagctg gattaagccg cgtggcggct
     5221 gacgcatccc taaccacacc acacgcgaac gcagccattg tccggcgtca tcaagcgtga
     5281 gtgtgaaacc aggttgacga atccgtccgg ctaaaagaga aagcgccttc tctttctcgg
     5341 cgctcacttc gcctaaaaat gccagagtca gatgcaaatt atcggcggcg accggacgtc
     5401 ccgcctcagg tgggaagtgt gtggcgcgcc agtggataat ctgttcgcgg atttctgcag
     5461 gtaagtcgat agcaaagaac agacgttgcg gttcagacat gtgaggcact cggttatgaa
     5521 ttaccgcgat gctacaatgt ggcgcgaaga atgttaaccc tctggagcgt tttgtgtcgt
     5581 cgttgcccgt tgctgccgtc ttacctgaat tacttaccgc tctcgattgt gcgccgcagg
     5641 tattattaag tgcgccgacc ggggccggga aatcaacctg gctgccgctg caactgctgg
     5701 cgcatcccgg cattaacggg aaaattatcc tgctggagcc gcgtcgtctg gcggcgcgta
     5761 acgtcgcgca acggctggag gagctgctta acgaaaagcc aggcgatacc gttggctacc
     5821 ggatgcgtgc gcaaaactgc gtcgggccga atacccgcct ggaagtagtt accgaaggcg
     5881 tgctgacgcg gatgatccag cgtgacccgg agttgagcgg tgttggattg gtgatccttg
     5941 atgaatttca tgagcgtagc ttgcaggcgg atttggcgtt ggcgctgtta ctcgatgtgc
     6001 aacaaggtct gcgtgatgac cttaaactgc taattatgtc ggctacgctg gacaacgacc
     6061 gcttgcagca aatgctgcca gaagcgtccg tcgtcatctc agaagggcgc tcgtttccgg
     6121 ttgaacgccg ttatttaccg ctgcccgcgc atcagcgttt tgacgatgcc gttgcggtag
     6181 ccaccgctga aatgctgcgt caggaaagcg gatcattact gttattttta cctggcgtcg
     6241 gagaaattca gcgtgtgcag gaacaactgg cttcgcgcat cggcagtgat gtattgctct
     6301 gcccgctgta tggcgcgttg tcgctgaacg atcagcgaaa agcgatcctc ccggcaccgc
     6361 aagggatgcg caaagtggtg ctggcgacca atattgctga aaccagttta accatcgaag
     6421 gtattcgtct ggtggtggat tgtgcccagg agcgtgtggc gcgttttgat ccgcgcacgg
     6481 ggctaacgcg actgattact caacgcgtta gccaggcatc catgacgcag cgtgccgggc
     6541 gcgccgggcg tctggagccg ggtatctgcc tgcatctaat cgccaaagaa caagcagaac
     6601 gcgctgccgc gcaaagtgaa ccggaaatct tacaaagcga tctttccggt ttgctgatgg
     6661 aattactgca atggggatgc agcgatccgg cgcagatgag ctggctggat caaccgccaa
     6721 cggtgaatct actggccgcg aaacgcctgt tacaaatgct gggggcgctg gagggtgaac
     6781 ggcttagtgc gcaggggcaa aaaatggcag cgctgggtaa cgatccgcgt ttagcggcaa
     6841 tgctggttag cgcgaagaac gacgacgaag ctgctaccgc ggcaaaaatt gccgccattc
     6901 tcgaagagcc gccacggatg ggcaatagtg acctgggcgt ggcgttttcg cgcaatcaac
     6961 cagcctggca gcaacgtagt cagcaactgt taaaacgctt aaacgtacgt ggcggtgagg
     7021 cagacagttc gcttatcgcg ccgctacttg ccggggcgtt tgccgatcgc attgctcgtc
     7081 gccgtgggca agatggacgc tatcaacggg caaacggcat gggagcgatg ctcgatgccg
     7141 acgacgcgct aagccgccac gaatggttga tcgcaccgtt attattgcag ggcagcgcct
     7201 cgccggatgc gcggatttta ctggcgctgc cggtcgatat tgatgagtta gtacaacgct
     7261 gcccgcagct ggtacagcag tctgacactg tggagtggga tgacgcgcaa ggtacgctga
     7321 aagcctggcg tcggctgcaa atcggtctgc tgacggtgaa agtgcagccg ctggcgaaac
     7381 cctcggaaga cgagttgcat caggcgatgc ttaatggcat ccgtgataaa ggtttaagcg
     7441 tgctcaactg gacggcggaa gcggaacagc tacgcttgcg tttgttatgc gccgcaaagt
     7501 ggttgccgga atatgactgg ccagcggttg atgatgaaag tttattggcg acgctggaaa
     7561 cgtggctgct gccacatatg actggcgtac attcactacg cggcctgaaa tcactcgaca
     7621 tttatcaggc actacgcgga ttacttgatt ggggaatgca gcaacgtctg gatagtgaat
     7681 tgcctgcgca ttacactgtg ccgacgggaa gccggatcgc tattcgttat catgaagata
     7741 acccgcccgc gctggcggtg agaatgcaag agatgtttgg cgaggccacc aatccgacga
     7801 tcgcccaggg gcgcgtgccg ctggtgctgg agttgctttc acctgcccaa aggccattac
     7861 aaatcacacg agatttgagc gccttctgga aaggagcgta ccgtgaggtg caaaaagaga
     7921 tgaaagggcg ttatcccaaa catgtctggc cggacgaccc ggcaaatact gcaccgacgc
     7981 gacggacgaa aaagtattcg taaggttggt tttctccctc tccctgtggg agagggccgg
     8041 ggtgagggca tcagcgcgca cgttcaccct caccctaacc ctctccctca agggagaggg
     8101 gaccgatcga acacaaattt tgagagatat cttcttctgt cttgtaacag aagaacagaa
     8161 aatcgggctt ttgcgcctga atattgcgga gaaaaagcat ggccgggaat gaccgcgagc
     8221 caattggacg caaagggaaa ccgacgcgtc cggtcaaaca aaaggtaagc cgtcgtcgtt
     8281 acgaagatga cgatgattac gacgattatg atgactatga ggatgaagaa ccgatgccgc
     8341 gcaaaggtaa gggcaaaggc aaagggcgta agcctcgtgg caaacgcggc tggctatggc
     8401 tactgctaaa actggctatc gtttttgccg tgctgatcgc catttacggc gtttatctcg
     8461 atcaaaaaat tcgtagccgt attgatggca aggtctggca actgcctgcg gcagtttatg
     8521 gccgaatggt caatcttgag ccagatatga ccatcagcaa gaacgagatg gtgaagctgc
     8581 tggaggcgac tcagtatcgt caggtgtcga aaatgacccg tcctggcgaa tttaccgtgc
     8641 aggccaacag cattgagatg atccgccgtc cgtttgattt cccggacagt aaagaagggc
     8701 aggtgcgtgc gcgtctgacc tttgatggtg atcatctggc gaccatcgtc aatatggaga
     8761 acaaccgtca gttcggcttt ttccgtcttg atccgcgtct gatcaccatg atctcctcgc
     8821 caaacggtga gcaacgtctg tttgtgccgc gcagtggttt ccctgatttg ctggtggata
     8881 ctttgctggc gacagaagac cgccatttct acgagcatga tgggatcagc ctctactcaa
     8941 ttgggcgtgc ggtgctggca aacctgaccg caggtcgcac ggtgcagggt gcgagtacgc
     9001 tgacgcaaca gctggtgaaa aacctgttcc tctccagcga gcgctcttac tggcgtaaag
     9061 cgaacgaagc ctacatggcg ctgatcatgg acgcgcgtta cagcaaagac cgtattcttg
     9121 agctgtatat gaacgaggtg tatctcggtc agagcggcga caacgaaatc cgcggcttcc
     9181 cgctggcaag cttgtattac tttggtcgcc cggtagaaga gctaagcctc gaccagcagg
     9241 cgctgttagt cggtatggtg aaaggggcgt ccatctacaa cccgtggcgt aacccgaaac
     9301 tggcgctgga gcgacgtaat ctggtgctgc gtctgctgca acagcaacag attattgatc
     9361 aagaactcta tgacatgttg agtgcccgtc cgctgggggt tcagccgcgc ggtggggtga
     9421 tctctcctca gccagccttt atgcaactgg tgcgtcagga gctgcaggca aaactgggcg
     9481 ataaggtaaa agatctctcc ggcgtgaaga tcttcactac ctttgactcg gtggcccagg
     9541 acgcggcaga aaaagccgcc gtggaaggca ttccggcact gaagaaacag cgtaagttga
     9601 gcgatcttga aactgcgatt gtgatcgtcg accgctttag tggtgaagtt cgtgcgatgg
     9661 tgggaggttc tgagccgcag tttgcgggct acaaccgtgc gatgcaggcg cgtcgttcga
     9721 ttggttccct tgcaaaacca gcgacttatc tgacggcttt aagccagccg aaaatctatc
     9781 gcctgaacac gtggattgcc gatgcgccaa tcgcgctgcg tcagccgaat ggccaggtct
     9841 ggtcaccgca gaacgatgac cgtcgttata gcgaaagcgg cagagtgatg ctggtggatg
     9901 cgttgacccg ttcgatgaac gtgccgacgg taaatctggg gatggcgctg gggctgcctg
     9961 cagttacgga tacctggatc aaactgggcg taccgaaaga tcagctgcat ccggttccgg
    10021 cgatgctgct gggggcgttg aacttaacgc caatcgaagt ggcgcaggcg ttccagacca
    10081 tcgccagcgg tggtaaccgt gcaccgcttt ctgcactgcg ttcggtaatc gcggaagatg
    10141 gcaaggtgct gtatcagagc ttcccgcagg cagaacgcgc tgttccggcg caggcggcgt
    10201 atctgacact atggaccatg cagcaggtgg tacaacgtgg tacgggtcgt cagcttgggg
    10261 cgaaataccc gaacctgcat ctggcaggga aaacagggac taccaacaat aacgtagata
    10321 cttggtttgc aggcattgac ggcagcacgg tgaccatcac ctgggtaggc cgtgataaca
    10381 accagccgac caaactgtat ggagccagcg gggcaatgtc gatttatcag cgttatctgg
    10441 ctaaccagac gccaacgccg ctgaatcttg ttccgccaga agatattgca gatatgggcg
    10501 tggactacga cggcaacttt gtttgcagcg gtggcatgcg tgtcttgccg gtctggacca
    10561 gcgatccgca atcgctgtgc cagcagagcg agatgcagca gcagccgtca ggcaatccgt
    10621 ttgatcagtc ttctcagccg caacagcaac ctgctcagca agagcagaaa gacagcgacg
    10681 gtgtagccgg ttggatcaag gatatgtttg gtagtaatta acatctaagc gtgaaatacc
    10741 ggatggcgag ttgccatccg gtaaaataac atcccatcta agatattaac cctttctttt
    10801 catctggttg tttattaacc cttcaggaac gctcagattg cgtaccgctt gcgaacccgc
    10861 cagcgtttcg aatattatct tatctttata ataatcattc tcgtttacgt tatcattcac
    10921 tttacatcag agatatacca atggcgcgtt ccaaaactgc tcagccaaaa cactcactgc
    10981 gtaaaatcgc agttgtagta gccacagcgg ttagcggcat gtctgtttat gcacaggcag
    11041 cggttgaacc gaaagaagac actatcaccg ttaccgctgc acctgcgccg caagaaagcc
    11101 catgggggcc tgctgcaact attgcggcga agcactctgc tactgcgact aaaacggata
    11161 caccaattga aaaaacgccg cagtctattt cggttgtgac aaatgaagag atgcagatgc
    11221 atcaatttca gtctgtaaaa gaagcattag gttatacacc tggcgttacg gttagcagtc
    11281 gtggtgcttc taatacatat gattttgtta tcattcgtgg tttctcatct gttggtctga
    11341 atcaaaataa ttaccttgat ggactaaaac ttcagggcaa cttttataac gatgctgtga
    11401 ttgatcctta catgctcgag agggttgaac tgatgcgtgg gccgacgtct gttctctatg
    11461 gaaaaagtaa tcctggtggg attatttcta tggtgagtaa gcgtccgacc actgaacccc
    11521 tgaaagaaat tcagtttaaa atggggacgg ataatctgtt tcagaccgga ttcgatttca
    11581 gtgatgcact ggatgataac ggtgagttct cttaccgttt gacgggcctc gctcgctcaa
    11641 caaacgaaca gcagaaaaac tctgaatctc agcgttatac cattgctcca tcattctcat
    11701 ggcgtccaga cgacaaaacc aattttactt tcctgtccta tttccagaat gaaccagaaa
    11761 cgggttatta cggttggttg ccgaaagagg ggaccgttga gccattgcct aatggtaagc
    11821 gtctaccgac tgacttcaat gaaggtgcat cgaataatac atactcccgt aaccagaaaa
    11881 tggtgggata tagttttgaa catggtttta atgacacctt caccgtgcgt cagaatctgc
    11941 gtttcagtga aatgaaaacc tcacagaaaa gtgtttatgg cacagggatt gctggtgatg
    12001 gtcataccct aaaccgcggg acagtggtgg ataatgagcg tctacaaaac tttagcgttg
    12061 atacccaact tgaaagtaag tttgctacag gtgacgtcga gcatactttg ctgacagggg
    12121 tagacttcat gcggatgcgt aatgatatca atgccagctt tggatccgca ccatccatcg
    12181 atctttataa caaatatcac cctgaatact ttgcatttgg tagcgcagag ccataccaga
    12241 tgaatgaaag caaacaaaca ggtatttatg ttcaggatca ggcggaatgg aataaatggg
    12301 tattcactct ggggggacgc tacgattggt ctaagcaagc gaccactgtt cgtgaaaact
    12361 cttatacgcc gactgaaggt tatattgagc gcaatgatca tcagttcacc tggcgcggtg
    12421 gtgtaaatta cttattcgat aatggtattt caccttactt tagctatagc cagtcctttg
    12481 aaccgagtgc tttcgatctg tggagcaacc cacgcatttc ctataagcca tcgaaaggtg
    12541 aacagtatga agctggcgta aaatatgttc cgaatgatat gccggtcgtt gttacgggcg
    12601 cagtctatca attgacgaaa acaaataacc tgacagcaga cccaacaaac ccattagcgc
    12661 aagtcccagc aggtgagatt cgcgctcgtg gtgtggaact tgaagcaaaa gcggcgttaa
    12721 atgccaatat taacttgacg gcttcttata cctacaccga tgcggaatac accaaagaca
    12781 ccaatctcaa aggtaaaact ccagaacaag taccggagca tatggcatct ctctgggggg
    12841 attatacctt caatgaaggg ccgctttctg gtttaacatt gggaacaggt ggtcgtttta
    12901 ttggttccag ctatggtgat ccggcaaaca cttttaaagt gggtagcgca gctgtaatgg
    12961 atgctgttgt aaaatatgat ctggcacgct ttggtatggc gggatccagc cttgctgtga
    13021 acgtcaacaa tttgctcgat cgtgagtatg ttgccagttg cttccagact tatggctgct
    13081 tctggggcgc agaacgtcag gtcgttgcaa ccgcaacctt ccgtttctaa tttctctttt
    13141 ggggcacgga tttccgtgcc catttcacaa gttggctgtt atgcaggaat acacgaatca
    13201 ttccgatacc acttttgcac tgcgtaatat ctcctttcgt gtgcccgggc gcacgctttt
    13261 gcatccgctg tcgttaacct ttcctgccgg gaaagtgacc ggtctgattg gtcacaacgg
    13321 ttctggtaaa tccactctgc tcaaaatgct tggccgtcat cagcctccgt cagaagggga
    13381 gattcttctt gatgcccagc cgctggaaag ctggagcagc aaagcgtttg cccgcaaagt
    13441 ggcttatttg ccgcagcagc ttcctccggc agaagggatg accgtgcgtg aactggtggc
    13501 gattggtcgt tacccgtggc atggcgcgct ggggcgcttt ggggcggcag atcgcgaaaa
    13561 agtcgaggaa gctatctcgc tggttggctt aaaaccgctg gcgcatcggc tggttgatag
    13621 tctctctggc ggcgaacgtc agcgggcgtg gatcgccatg ctggtggcgc aggatagccg
    13681 ttgtctgttg ctcgacgaac cgacctcggc gctggatatc gcccaccagg ttgatgtgct
    13741 ggcgctggtg caccgtttaa gtcaggagcg tggcctgacg gtcattgccg tgttgcacga
    13801 tatcaatatg gcggcacgct actgtgatta tctggtcgcc ctgcgcggtg gtgaaatgat
    13861 tgctcaggga acgcctgcgg aaattatgcg cggcgatacc ctcgaaatga tttatggcat
    13921 cccgatgggt attttgccgc atccggcggg tgctgcacct gtgagttttg tttattgatg
    13981 agcggcttac ctcttatttc gcgccgtcga ctgttaacgg cgatggcgct ttctccgttg
    14041 ttatggcaga tgaataccgc ccacgcggcg gctattgatc ccaatcgtat tgtggcgctg
    14101 gagtggttgc cggtggaatt actgctggcg ctcggcatcg tgccttacgg cgtggcggat
    14161 accatcaact atcgcctgtg ggtcagcgaa ccaccattgc cggactcagt gatcgacgtc
    14221 ggtttgcgca cagaacctaa ccttgaactg ctgaccgaaa tgaaaccgtc gtttatggtc
    14281 tggtcggcag gatatggccc ttcagcagaa atgctggcac gtattgcgcc ggggcgtgga
    14341 tttaacttca gcgacggcaa acagccgctg gcgatggcgc gtaaatcact gacggaaatg
    14401 gcagatttac ttaacctgca aagcgcagca gaaacgcatt tagcgcaata tgaagacttt
    14461 atccgcagca tgaaaccccg ctttgtgaag cgtggtgcac gcccgttatt gctgacgacg
    14521 cttatcgatc cgcgccatat gttggtcttc ggtccaaaca gcttgttcca ggaaattctt
    14581 gatgagtacg gcatcccaaa tgcctggcaa ggggaaacca acttctgggg cagtaccgcc
    14641 gtcagtatcg atcgtctggc agcgtataaa gacgttgatg tgctctgttt tgatcacgac
    14701 aacagcaaag acatggatgc gctaatggca accccgctgt ggcaggccat gccgtttgtc
    14761 cgcgctggac gctttcagcg cgtacccgca gtctggtttt atggtgcgac gctctcggca
    14821 atgcactttg tgcgcgttct ggataacgcc atcggaggta aagcgtgagt aaacgaattg
    14881 cgcttttccc ggcgttattg ctggcgctgc tggtgattgt cgctacggcg ctgacctgga
    14941 tgaacttttc gcaggcgctg ccgcgtagcc agtgggcgca ggccgcctgg tcgccggata
    15001 ttgacgtcat cgagcagatg atttttcact acagcttgct gccgcgtctg gctatttcgc
    15061 tgctggtggg cgcaggcctg gggctggtgg gcgtgctgtt tcagcaagtg ctgcgtaatc
    15121 cgctggcgga accgacgaca cttggcgttg ctacaggcgc gcaactgggg attaccgtca
    15181 ctacgctctg ggcgatccca ggggcgatgg cgagtcagtt tgctgcgctg gcgggcgctt
    15241 gcgttgttgg cttaattgtc tttggcgtcg cgtgggggaa acggctttcg ccggtaacgc
    15301 tgatcctcgc ggggctggta gtgagccttt attgtggggc aatcaatcag ttactggtta
    15361 tcttccacca tgaccaactg caaagcatgt tcctgtggag caccggaacg ctgacgcaaa
    15421 ccgactgggg cggtgttgag cgtttatggc cgcagttgct gggcggtgtg atgctgacgt
    15481 tgctgctact tcgcccgtta accctgatgg ggcttgatga tggcgtggcg cgcaatctcg
    15541 ggctggcctt gtcgctcgcg cgtctggcgg cgctgtcgct ggcgattgtc atcagtgcgc
    15601 tgctggtgaa cgcggtgggg attatcggct ttatcgggtt gtttgcgccg ttgctggcaa
    15661 aaatgctggg gtcgcggcgt ctgctgccgc gactgatgct ggcgtcgttg attggtgcgc
    15721 tgatcctctg gctttccgat caaatcatcc tctggctgac tcgcgtgtgg atggaagtgt
    15781 ccaccggttc ggtcactgcg ttgatcggtg cgccgctgct actgtggctg ttgccgcgtt
    15841 tacgcagcat tagcgcgccg gatatgaagg tcaacgatcg tgtcgcggct gaacgccaac
    15901 atgtgctggc gtttgccctc gcgggcggcg tgctgctgtt gatggctgtg gtggtggcgc
    15961 tgtcgtttgg tcgtgatgcg cacggctgga tgtgggcgag cggggcgttg ctcgatgatt
    16021 taatgccctg gcgctggccg cgaattatgg cggcgctatt tgcgggcgtc atgctggcgg
    16081 tggcgggctg tattattcag cgactgaccg gcaacccgat ggcaagcccg gaagtgctgg
    16141 ggattagctc cggcgcagcg tttggcgtgg tactgatgct gtttctggta ccgggtaatg
    16201 cttttggctg gctgttaccc gcgggaagta tcggtgccgc ggtgacgctg ttgattatta
    16261 tgatcgccgc cgggcgcggt ggattttccc cacaccgcat gttactggcg gggatggcgt
    16321 taagtaccgc attcaccatg cttttaatga tgttgcaggc gagtggtgac ccgcgaatgg
    16381 cgcaagtgct cacctggatc tctggttcga cctacaacgc caccgatgcg caggtctggc
    16441 gtaccggaat tgtgatggtg attttgctgg cgattacccc gctgtaccgc cgctggctga
    16501 ccattttacc tctgggcggt gataccgcac gagctgtggg aatggcgctg acgccgacgc
    16561 gaattgcgct gctgctgtta gcggcttgcc tgacggcgac cgcgacgatg actattggac
    16621 cgttgagttt tgttggttta atggcaccgc atattgcgcg gatgatgggt tttcgacgga
    16681 cgatgccaca catcgtaatt tcggcgctgg tgggtggttt actgctggta ttcgctgact
    16741 ggtgtgggcg gatggtgctg tttccattcc agatcccggc ggggctgctg tcgaccttta
    16801 tcggcgcgcc atattttatc tatttgttga gaaagcagag ccgttaattg agtgcctcgc
    16861 ccggtgggcg aggcaaaatt atcacaactt cgcaaatacc cgacgtgcag catcgatggt
    16921 gttattgata tcttccatgc tgtgcgccac agacataaag cccgcttcaa acgctgacgg
    16981 tgccaggtaa acaccttcgt ccagcatcat atggaagaaa cgcttaaagc gttccacgtc
    17041 acaggccatc acatcctgat agcacgtcac ggactcggcg tcggtaaaga aaataccgaa
    17101 catgccgcca acgtggttaa cgaccagcgg agttccggct tcttctgccg cttccagcag
    17161 accttctgcc agacgtgttg tcagctcatc cagcgtttcg tgaacgcccg gctgcgcgac
    17221 ttcattcaga caggcgaaac ccgctgccat cgcaatcggg ttaccggaaa gcgtacccgc
    17281 ctgatagacc ggacccgtcg gggccagcgc atccattaca tcacgacgac caccgaatgc
    17341 gcctaccggc attccaccgc cgatgatttt gccgaggcag gttaaatctg gcactacgcc
    17401 gtaataatcc tgtgcgccag ccagtgccac gcggaagccg gtcatcactt catcgatgat
    17461 cagcaacgtg ccaaattcgt cgcacagcgc acgcagacct ggcaggaact ctggctgcgg
    17521 cggaacacag ttcatattgc ctgccaccgg ctcgacgata atacaggcaa tctcttgcgg
    17581 gtattgctca aacgcggcgc gtacagaagc cagatcgtta taagtacagg ttaaggtatg
    17641 tttggcgaaa tctgccggaa cacccggcga gtttggctgg cctaacgtga gtgcgccaga
    17701 accggctttc accagcaggc agtcagcgtg accgtggtaa caaccttcaa atttaatgat
    17761 tttgtcgcga ccggtaaaac cacgggccag gcggatggcg ctcatggtcg cttcagtgcc
    17821 ggagttcacc atgcgtacca tatccatggt cgggaccagt tcggtcacca gttgcgccat
    17881 tttcacttcc atttcggtcg gtgcaccaaa gcttaaacca cgctcggcgg cttcaatcac
    17941 ggcattgcgg atagccggat ggttatggcc cagcaccatc ggcccccagg aaccgacata
    18001 atcgatatag gctttgccat caacatcgta cagataagcg ccgtccgctt tttcgataaa
    18061 cagtggagtg ccgcccacgc cagtaaaggc gcgaacaggg gagttcacac cgccagggag
    18121 cagctcgcgc gctgcgctgt aaagattttc agacttactc atggagggtt cctgattcgt
    18181 agaaaaagtg aatggctgct attctatgtt attcataaca agttaaatac tcgtcaaaca
    18241 tcaggctgct tgtactggtg caatcctgat ttcttagagt ataaaagttt tgtgcatttg
    18301 aaacattacg ctttgcaaag gattttcatg gaacgcgcga gtaaaatgcc gtcatcttat
    18361 ttgtatgacc aataagtgat cattggatga aaactgatac tccctcttta gaaacaccgc
    18421 aggccgcgcg cctacgacgc agacaactga ttcgccaact tcttgagcgc gataaaaccc
    18481 cgttagccat tttgtttatg gcggcagtcg tcggcacgct tgtcgggctg gcagcggttg
    18541 cttttgacaa aggtgtcgcc tggttgcaga accaacgtat gggggcgctg gtacatactg
    18601 ctgataatta tccgcttctg ttaaccgtcg cttttctctg ttcggcggtg ctggcgatgt
    18661 tcggctactt tttggtgcgc aaatacgcgc cggaagcagg tggttcgggg atcccggaaa
    18721 ttgaaggggc gctggaagat caacgtcccg ttcgctggtg gcgtgtgttg ccggtgaaat
    18781 tctttggcgg gctggggaca ctcggcggag gcatggtgct ggggcgcgaa gggccaaccg
    18841 tgcagatcgg cggcaatatc ggtcgcatgg tactcgatat tttccgcctg aaaggtgatg
    18901 aagctcgcca tacgctgctg gcaaccggtg ctgctgcggg gctggctgcg gcctttaacg
    18961 cgccgctggc gggtattttg tttattatcg aagagatgcg tccgcagttt cgctatacgt
    19021 taatttcgat taaagcggta tttattggcg tcattatgtc gaccattatg taccggattt
    19081 ttaatcatga agttgcgttg attgacgtcg gtaaactttc tgatgcgccg cttaatacgc
    19141 agtggcttta tctgatcctc ggtattattt ttggcatttt cggccctatt tttaataaat
    19201 gggtgctggg gatgcaggat ttgctgcacc gtgtgcacgg cggcaatatt accaaatggg
    19261 tgctaatggg cggtgcgatt ggcggtctgt gtggattgct ggggtttgtg gcaccagcaa
    19321 cgtcgggcgg cggttttaac ctgattccta tcgctaccgc agggaatttc agcatgggaa
    19381 tgctggtgtt tatcttcgtc gcgcgggtca ttaccacctt actgtgcttc tcttccggcg
    19441 cgccgggcgg tatttttgcc ccgatgctgg cgctgggtac tgtgctggga accgctttcg
    19501 gaatggttgt cgttgagctg tttccgcaat atcaccttga ggcggggact tttgctattg
    19561 ccggaatggg ggcgttactg gcggcatcta ttcgcgcgcc gttaacgggg atcattttgg
    19621 ttctggagat gaccgataac taccagctca ttttgccaat gattattacc ggtcttggcg
    19681 caacactatt agcgcaattt accggcggga aaccgctata ttcggcgatt cttgcgcgca
    19741 cgctggcaaa acaggaagct gagcaactgg cgcgaagcaa ggccgcatca gccagcgaga
    19801 atacttgaac gaaataccag ggtattagat aatggcgatt attattgggt tagaatttgc
    19861 ccaattgccg atgtcgtttg gagcaaaata tgagtgatga cgtagcactg ccgctggagt
    19921 ttaccgacgc agcagccaac aaagttaaaa gcctgatcgc tgacgaagat aacccgaatc
    19981 tgaaattacg cgtgtatatc accggtggcg gttgcagcgg cttccagtat ggtttcacct
    20041 ttgatgatca ggtgaacgaa ggcgatatga ccatcgaaaa acagggcgtt ggcctggtgg
    20101 ttgatccgat gagcctgcaa tatctggtcg gtggttccgt tgactatacc gaaggactgg
    20161 aaggttctcg tttcatcgtg accaacccga acgcgaaaag cacctgcggt tgcggttctt
    20221 cctttagcat ctaatctgtt gttcatgtgc cggataaact atccggcaca tcttctctct
    20281 tcaacgccca ttctcatcca gcgcaaacgt cggtagctta agatgccaac gaatagccgc
    20341 cagccgaatc aatagcgtca cgaccatgcc catcatactg gctgtttcca gtggtacgga
    20401 aaatgtgtaa taagccgtag cgtggacaat accgccgata atacaggcag ttgcgtagat
    20461 ttctgtacgt aaaatcatgg ggatttcgcg ggccagtaca tcacgaatga tcccgccgcc
    20521 aacgccagta atgacgccca tacaaaccgc gattaacgga ccggcttccg cattaaaggc
    20581 tttattcacg ccaatgccga caaacaccgc cagaccaacg gcgtccagca ccggcaacat
    20641 ccattttggt aagcgtcttg gctggcgcac cagcacgatg gtcagcatgc tggttaccat
    20701 tgcaacgacc agatcggtgg gatctttcac ccaaaatacc gggccgtgat ccagcgccat
    20761 gtcgcgaatt gtcccgccgc ctacagcggt aaccacgccc agcaccagaa caccaaaagg
    20821 gtccatacgc aattttccgg ctaacaaaac gccggagatg gcaaataccg ctgtgccgac
    20881 tatatccagc caatagacga gcattgttca atccccactg agcacctaaa aaggtcaggc
    20941 gctaatctac ctgtgaaagc gcattacaga gctgttgtgc agcgaggata atacgtgggc
    21001 ttgcacgtca aaccagtcac tcgtgagagg aataacggga attttgagct gttcacccca
    21061 gtattgtttg attttaggaa tttggtccgg tccgcctgta atgacaatcg cctgtggcga
    21121 gcgtgctaac acctgttcgc ggctaacttg cggccaagga acccggctgt ctttaaagat
    21181 gttttctccg ccacaaactt cgagtacctg gttttgaatc gactcttttc cactggtaaa
    21241 tggcggatta atgccgaatt gcagaaaaac acgtttttta ggtttaccag catattgcgc
    21301 tttcaattgc gcgtactgat ccagcaggga ttgcgcggct tgttcggcct tatccggttg
    21361 cggactccag ggggccagtt gacgtaacgc attggcaatt tgttcaatgc ttgtcgcatc
    21421 gacccacatc acttttattc ccagcgaagc cagctggtca acctgccgct cggcattacc
    21481 tccacgccag gcaatcacca gatcgggttt cagcgcgaca atgcgttcca gattcatccc
    21541 ctgccaggtg gaaacctgct caatcttttg cgcttgtgga ggatagtcgg aatagctgct
    21601 gaccccaacc ggcgtgatcc cggcggcaaa ggcaagttca gtgttggcgg gagaaagcgt
    21661 gatgacgcgc ggtgccgcgt tgagccacag tggcgcgaga aaagacaggg cgaccagcgc
    21721 cctgaacagt gacttagcca tgtgccagtt tctgcaccag tgactcaacc atcaggctgg
    21781 actgtttagc ggcaacagcc aggaactcat cgaagctaag atgagactgt tgatcggcca
    21841 cgtcggagat ggcgcgtacg acaacaaacg ggacgttgaa attgtggcag acatgggcga
    21901 ttgccgtcgc ttccatctct acagcaatgg cctgtgggaa gttgtggcgg attttcgcca
    21961 gaccaacaga accgttgatg aaagcgtcgc cgctaacaat caggccacgt acagcgttaa
    22021 gattcagttc ggcaatgcag gcctcagcgg cagcgatcag tttatcgtca gctttaaagc
    22081 ctgccggaca gcctggtaac tgaccgtatt cataaccaaa tgccgtgaca tccgcgtcgt
    22141 gataacgtgc ttcgtccgag acaacgatat cgcccacttt caacgttggt gccaggccac
    22201 cggcagaacc ggtgttaata atcacatctg gcttgcagtg ttccaacagc aaagtggcac
    22261 ccagcgccgc agcgacttta ccgatgcccg atttcagaag cgcaacctcg gttccattca
    22321 gttggccggt atagatttcg caaccgccga gactgatagt ttgacgattt tcgattttgt
    22381 cacgcagcag cgtaacttct tcttccattg caccaatgat gccgattttc atagatttac
    22441 tcgcgataag cccgatttga aggcatagtt taccatgcgc ttacggggaa gcgtatttct
    22501 cacgcgggag aggacatggc acagattgat ttccgaaaaa aaataaactg gcatcgtcgt
    22561 taccgttcac cgcagggcgt taaaaccgaa catgagatcc tgcggatctt cgagagcgat
    22621 cgcgggcgta tcatcaactc tccggcaatt cgtcgtctgc aacaaaagac ccaggttttt
    22681 ccactggagc gcaatgccgc cgtgcgcacg cgtcttaccc actcgatgga agtccagcag
    22741 gtggggcgct acatcgccaa agaaattcta agccgtatga aagagcttaa attactggaa
    22801 gcatacggcc tggatgaact gaccggcccc tttgaaagca ttgttgagat gtcatgcctg
    22861 atgcacgata tcggcaatcc gccgtttggt cattttggcg aagcggcgat aaatgattgg
    22921 tttcgccagc gtttgcaccc ggaagatgcc gaaagccagc ctctgactga cgatcgctgc
    22981 agcgtggcgg cactacgttt acgggacggg gaagaaccgc ttaacgagct gcggcgcaag
    23041 attcgtcagg acttatgtca ttttgagggg aatgcacaag gcattcgtct ggtgcataca
    23101 ttgatgagga tgaatctcac ctgggcacag gttggcggta ttttaaaata tacccgtccg
    23161 gcgtggtggc gtggcgaaac gcctgagaca catcactatt taatgaaaaa gccgggttat
    23221 tatctttctg aagaagccta tattgcccgg ttgcgtaaag aacttaattt ggcgctttac
    23281 agtcgttttc cattaacgtg gattatggaa gcagccgacg acatctccta ttgtgtggca
    23341 gaccttgaag atgcggtaga gaaaagaata tttaccgttg agcagcttta tcatcatttg
    23401 cacgaagcgt ggggccagca tgagaaaggt tcgctctttt cgctggtggt tgaaaatgcc
    23461 tgggaaaaat cacgctcaaa tagtttaagc cgcagtacgg aagatcagtt ttttatgtat
    23521 ttacgggtaa acaccctaaa taaactggta ccctatgcgg cacaacgatt tattgataat
    23581 ctgcctgcga ttttcgccgg aacgtttaat catgcattat tggaagatgc cagcgaatgc
    23641 agcgatcttc ttaagctata taaaaatgtc gctgtaaaac atgtgtttag ccatccagat
    23701 gtcgagcagc ttgaattgca gggctatcgg gtcattagcg gattattaga gatttatcgt
    23761 cctttattaa gcctgtcgtt atccgacttt actgaactgg tagaaaaaga acgggtgaaa
    23821 cgtttcccta ttgaatcgcg cttattccac aaactctcga cgcgccatcg gctggcctat
    23881 gtcgaggctg tcagtaaatt accgtcagat tatcctgagt ttccgctatg ggaatattat
    23941 taccgttgcc gcctgctgca ggattatatc agcggtatga ccgacctcta tgcgtgggat
    24001 gaataccgac gtctgatggc cgtagaacaa taaccaggct tttgtaaaga cgaacaataa
    24061 atttttacct tttgcagaaa ctttagttcg gaacttcgcg ctataaaacg aatctgaaga
    24121 acacagcaat tttgcgttat ctgttaatcg agactgaaat acatgaaaaa aaccacatta
    24181 gcactgagtg cactggctct gagtttaggt ttggcgttat ctccgctctc tgcaacggcg
    24241 gctgagactt cttcagcaac gacagcccag cagatgccaa gccttgcacc gatgctcgaa
    24301 aaggtgatgc cttcagtggt cagcattaac gtagaaggta gcacaaccgt taatacgccg
    24361 cgtatgccgc gtaatttcca gcagttcttc ggtgatgatt ctccgttctg ccaggaaggt
    24421 tctccgttcc agagctctcc gttctgccag ggtggccagg gcggtaatgg tggcggccag
    24481 caacagaaat tcatggcgct gggttccggc gtcatcattg atgccgataa aggctatgtc
    24541 gtcaccaaca accacgttgt tgataacgcg acggtgatta aagtccagct gagcgatggc
    24601 cgtaagttcg acgcgaagat ggtcggcaaa gatccgcgct ctgatatcgc gctgatccaa
    24661 atccagaacc cgaaaaacct gaccgcaatt aagatggcgg attctgatgc actgcgcgtg
    24721 ggtgattaca ccgtagcgat tggtaacccg tttggtctgg gcgagacggt aacttccggg
    24781 attgtctctg cgctggggcg tagcggcctg aatgctgaaa actacgaaaa cttcatccag
    24841 accgatgcag cgatcaaccg tggtaactcc ggtggtgcgc tggttaacct gaacggcgaa
    24901 ctgatcggta tcaacaccgc gatcctcgca ccggacggcg gcaacatcgg tatcggtttt
    24961 gcaatcccga gcaacatggt gaaaaacctg acctcgcaga tggtggaata cggccaggtg
    25021 aaacgcggtg agctgggtat tatggggact gagctgaact ccgaactggc gaaagcgatg
    25081 aaagttgacg cccagcgcgg tgctttcgta agccaggttc tgcctaattc ctccgctgca
    25141 aaagcgggca ttaaagcggg tgatgtgatc acctcactga acggtaagcc gatcagcagc
    25201 tttgccgcac tgcgtgctca ggtgggtact atgccggtgg gcagcaaact gaccctgggc
    25261 ttactgcgcg acggtaagca ggttaacgtg aacctggaac tgcagcagag cagccagaat
    25321 caggttgatt ccagctccat cttcaacggc attgaaggcg ctgagatgag caacaaaggc
    25381 aaagatcagg gcgtggtagt gaacaacgtg aaaacgggca ctccggctgc gcagatcggc
    25441 ctgaagaaag gtgatgtgat tattggcgcg aaccagcagg cagtgaaaaa catcgctgaa
    25501 ctgcgtaaag ttctcgacag caaaccgtct gtgctggcac tgaacattca gcgcggcgac
    25561 agcaccatct acctgttaat gcagtaatct cactcaaccc cttcctgaaa acgggaaggg
    25621 gttctcctta caatctgtga acttcaccac aactccatac atcttcatca tcctttaggc
    25681 atttgcacaa tgccgtacgt tacgtacttc cttatgctaa gccgtgcata acggaggact
    25741 tatggctggc atcttgatac caaaatggcg caggatatcg tggcacgtac catgcgcatc
    25801 atcgatacca atatcaacgt aatggatgcc cgtgggcgaa ttatcggcag cggcgatcgt
    25861 gagcgtattg gtgaattgca cgaaggtgca ttgctggtac tttcacaggg acgagtcgtc
    25921 gatatcgatg acgcggtggc acgtcatctg cacggtgtgc ggcaagggat taatctaccg
    25981 ttacggctgg aaggtgaaat tgtcggcgta attggcctga caggtgaacc agagaatctg
    26041 cgtaaatatg gcgaactggt ctgcatgacg gctgaaatga tgctggaaca gtcgcggttg
    26101 atgcacttgt tggcgcagga tagccgtttg cgggaggaac tggtgatgaa cctgattcag
    26161 gcagaggaga atactcccgc acttactgaa tgggcgcaac ggctggggat cgatctcaat
    26221 caaccgcgag tggtggctat tgttgaggtc gacagcggtc agcttggtgt ggacagcgca
    26281 atggcggagt tacaacaact gcaaaacgcg ctgactacgc ccgagcgtaa taatctggtg
    26341 gcgattgtct cgctaaccga aatggtggtg ttgaaaccgg cgttgaactc ttttgggcgc
    26401 tgggatgcag aagatcatcg taagcgagtt gaacaactga ttacccgcat gaaagagtac
    26461 ggccagctgc gttttcgcgt ttcactgggc aactatttta ccggtcctgg cagtattgcc
    26521 cgatcctatc gtacggcgaa aacgacgatg gtggtgggta aacagcggat gccagaaagt
    26581 cgctgctatt tttatcagga tctgatgtta cctgtgttac tcgacagttt gcgtggcgac
    26641 tggcaggcca acgaactggc gcgaccgctg gcgcggctga aagcgatgga caataacggc
    26701 ttgctgcgac gaacgctggc ggcgtggttt cgtcacaatg tgcaaccgct ggcaacgtca
    26761 aaggcgttgt ttattcatcg taataccctg gagtatcggc ttaattgtat atcggaactg
    26821 accgggcttg atttgggcaa ttttgatgac aggttgctgc tgtatgtggc gttacaactg
    26881 gatgaagagc ggtaggttat gcgttaaggt tgaggcggcg ctgtctcatt cccctcagcc
    26941 cgaaggggag aggggaatgc ccgaattaac cgtcaattcg ggattattta cgcgttagtt
    27001 tttccagatc ggcttcaatc tcgctgatct tattggttac gactgactcc aggtgacgta
    27061 agtcgtcgag gatcttacgc ttaagatcaa cttcgctgcg gtcacgctgg cagatttgat
    27121 caagctcatc aatgatatac cgtagattcg ggctgatttc ctggacttct ttataaccct
    27181 gacccacacc atcagcgacg accgttttac gctgacgcgg atatttaaac ttaacgctct
    27241 tggcgaaaaa ctcgcctttg tctttctgga aatagatttt cagaatatcg ttgttggctt
    27301 cctgccggag gctgtaacga tcaatttctt caggattggt aatacccaga cttttcagat
    27361 tgtcgtacat agcgttacct caaaatgagt cagtaaattg tgcttatttt agcatttggc
    27421 ctggcccgcc cggctcgact gtgatcgcag aaagcctttt tcttccagac ttctatcatg
    27481 gcgtaaaaat caaaaaatta cctgctttat tgtggtgata aaattcacgt tctacaccag
    27541 ttccagcatc gttacttccg ggcggcagtt cagacgcaaa ccatacaaac tgcccacgcc
    27601 acgggttgtg tagatgtgtc gttcgccaaa ggcatttaat ccggcgacgt aacgtttatc
    27661 ttcgacaggg gcaaaaggtt caccaaccaa cggtacgcgc agttgcccgc cgtgagtatg
    27721 gccgcacagc atcagatccc agggttcatc acgcatgact tctttgctgt cgggattatg
    27781 tgccagcatc agtcttggca gatttgcttc gctggcggga ggtggtttgc attgtccggc
    27841 ccataagtca ccggtgccta ccagttcgaa ttgcctgttc ggcgtggcga tcaccgtagc
    27901 ctggttaaac aacaccgtga tgcccactga tttcaacgtc tcgccaatta agtgattttt
    27961 ttctgtacca acagggcgat cgtggttgcc gaagcaggca aacgtcggcg cacattcggc
    28021 aaggggggag aggacatcac taaacgccga aaaattcagc ggcatatcaa ataatacgta
    28081 atcgccgccc agtaatatca aatcgggctt ttgttctatg ccaagagcaa tcgcgtcaga
    28141 aatcaggctt aaaggaacaa aacgagagta atggagatcg gccagaaaaa gaattttgaa
    28201 tggtgctgcg ttgtctttaa aaaaggcgag gcggtgacgg attaattcaa accagcctgg
    28261 ctcccagtaa tgcatataac cgaaacctga gctcgtggct atcgtcgcgg cagtagcctg
    28321 caacaatcgg cggcgtgaaa tcatcgctca tccctgcaaa aaaaatcggg cagcgtcgtg
    28381 ctgcccgtgt gcatactttt agtcgatggt acgcagcagt tcgttaatgc cgactttgcc
    28441 gcgagttttc gcgtcaactt tcttaacgat aaccgcacag tagaggctgt atttgccatc
    28501 ttttgacggc agattacctg aaacaaccac agaccccgcc ggaacgcgac cgtagtggat
    28561 ttcgccggtt tcacggtcgt aaatacgggt gctctgacca atgtatacgc ccatggaaat
    28621 gacggaacct tcttcgacaa tcaccccttc aactacttca gagcgtgcgc caatgaagca
    28681 gttatcttca atgatggttg ggttagcctg cagcggttcc agcacgccgc cgatgcccac
    28741 gccaccggaa aggtggacgt ttttaccaat ctgcgcacaa gaaccgacgg tcgcccaggt
    28801 atcaaccatg gtgccttcat caacatatgc gccgatgttg acgtaagacg gcatcagcac
    28861 ggtgttacgg gcaataaacg caccctgacg taccgccgct ggtggcacaa cgcggaagcc
    28921 ttctttctgg aaacgtgctt cgtcgtagtc ggcgaatttc atcggcactt tgtcgaagta
    28981 gcggctttct gccccttcga tcacctgatt atcattaata cggaaagaga gcagcaccgc
    29041 ttttttcaac cactgatgcg tcacccactg accgtcaatt ttttccgcta cacgcagtgc
    29101 accggaatcc agcagggaga tcacctgatt taccgcttcg cgggtaacgg tgtctgcgtt
    29161 ggctggcgtg atctcggcac ggcgttcaaa agcggtttca ataatgttct gtaactgctg
    29221 cattgttaaa ctcttttcat atcagtaaac acatcaccct ttatcgtttg gattgagggc
    29281 ctctgtcaac cgctgatgca cttcctgctg caactcgtta ttaagcgcac gccggtcagc
    29341 ggtggcaatt atgaataaat cttctactcg ctcgccaatg gttgtaattc gggcaccatg
    29401 aagcgaaatt cccagatcgg caaaaatttt cccgactctc gccagcagtc ctggctggtc
    29461 gagcgcgata agctcaagga acgatttgcg gtcggtatgg gtcggcaaaa acgttacttc
    29521 ggtttcaaca gtaaaatggc gtaatttggc gggttggcga cggggctgcg gtggctgcca
    29581 gctactttgc gtcagtactt gctccagacc aaaccgaata acctcatgac gatctgcgga
    29641 cagcgggctg ccatcgggtt ccagcacgat aaaggtatcc atcgccatac cgtcgcgagt
    29701 ggtgaaaatt tgtgcgtcgt gaacacttaa attgcggcgg tctaattcgg cacagacggc
    29761 ggcaaacaga taggggcggt ccgggctcca gataaaaatc tcggtgcctc cacgcgtagc
    29821 ctgcgggcta agcaatacca gtggtttgct taaatcatgc tgtaataaat ggcgggcatg
    29881 ccaggccagt tgatttgggc tatggcggac aaaatagtta gcacgacagc gtgaccaaat
    29941 ttggtgcagc gcctcttcgt cgatgttatc catgcgcagt agtgccagtg cctggagttg
    30001 gtgatggcga acccgttcgc gcatatccgg cgtgttttgc attccgcgtc gtagctgctt
    30061 ttcggtggca aaatagagtt cgcgcaacag actttgcttc cagctattcc acagcgtttc
    30121 gttggtggcg caaatgtcag ccactgtcag gcataccaga tagcgcagac gattttccgt
    30181 ttgaacttct tcggcaaact gcttgatgac ttcagggtcc tgaatatcgc ggcgttgtgc
    30241 tgtcaccgac atcagcaagt gctggcgaac cagccaggca accagctgtg tttcgcgtga
    30301 gttcagcccg tggagttctg caaaatgcac tacatcctga gcaccgagaa tggagtggtc
    30361 gccgccgcgt cctttggcga tatcgtgaaa cagcgcggcg atgaaaatca gctcagttga
    30421 cggcaggcgc ggccagacgt ccacacacaa cggatggcgc tggcgcgttt cttcactggc
    30481 aaaactctcc agtttcagca tcacgcggat agtatgttca tccaccgtgt aggcgtggaa
    30541 cagatcaaac tgcatctgcc cgacgatatg cgaccattgc ggcatatacg cgccgagcac
    30601 gctatggcga tgcattggca atagcccgcg ccgcaccgct ccggggtgac gcagaatgct
    30661 caaaaacagt tttcgtgctt ccggaatatt acacagcggt tgttgcagat ggcgacgggc
    30721 atggcgtaac tggcgcagcg tggtggagta aatgccggtg atcgcactgt tgcgcaccat
    30781 ggtgtagaac atacgcaaga tggcttccgg ctggcgcata aatagtgttt catcacgcag
    30841 gtcgattagc gtaccgcgta gctgaaactc atcgtcgatt ggacgtggtt tttcgtcggc
    30901 aggaagggcg aggatggctt catcgaacag ttgcagcagc atctggttga gttcactgac
    30961 gcggcgtgta acgcggaagt aatccttcat catccgctcg accggttcgt tgccttcacc
    31021 actgtaattc agacgctgag cgacgctaag ttggcgatcg aataacaggc gattatcgta
    31081 acggctgacg accagatgca gggcaaagcg aatacgccac agtatatgca gacattcgtt
    31141 taattccgcc cgctccgctg aggttaagaa gccaaaccca accatttcat ccagcgatgt
    31201 tgcgccaaaa tgacggcggg ccacccattg cagagtgtgg atatcgcgca agccgccagg
    31261 gctacttttg atgtctggtt caagattgta gctggtgccg tggtaacgct gatggcgctg
    31321 gttctgttct tcaactttcg ccgcgtagaa cttgtcggaa ggccagaatc cttcgctaaa
    31381 aatatgtttt tgcagttcga ggaagagcgc aacatcgcca attaataagc gggattcgat
    31441 taaattggtg gcgacggtta aatccgataa cccttccagc atgcactctt caagcgtgcg
    31501 cacactatga ccgacttcca gctttacatc ccagagcagc gttaacagct cgcccacttt
    31561 ttgcgcctga tcgtccggga gctttttacg gcttaaaatc agtaaatcga tgtcagaaag
    31621 tggatgcagc tcgccacgac cgtagccacc gacggcgacc aatgccaggt cggcaatctg
    31681 gctgaatccc gcttcaatcc ataatcgttg caggagctgg tcgataaact cggtgcgcgc
    31741 ctcaatcaac tgttctgcag agatcccatt gtcaaaggca tcacccagcc aacgctggaa
    31801 agtatctata tgggctttta tcccaccgac ggttaattca tcacggggcc agacgcatgg
    31861 attttgcggt tgaccgggca gggtggggag agcggtgttt gcgtactgtt ctggaagggt
    31921 attcattgtg cgccactcat aagattaaat tatcgcatta aaaaagccgg cattcgccgg
    31981 cttcatctta ttcgtcgtgc gagattatcg ccgggatggt gtcatccttg cgtagcgtca
    32041 gaatttcgca gccgttatca gtcaccacaa tagtatgctc atattgtgca gacaagctgc
    32101 gatctttggt ttttaccgtc cagccatctt tcatggtgcg gatctctttt ttacccgcgt
    32161 tgaccattgg ctcgatggtg aacgtcatcc caggtttcag tacgacgttg gtttcacggg
    32221 agtcatagtg cagcacctgc ggttcttcat ggaagccgcg accaataccg tgtccgcaat
    32281 attcacgaac gacggagaag ccttctgctt cgacaaactt ctgaatcgcc gcaccgattt
    32341 cgcgcaggtt aatgcctggt ttgaccatgc gcagcgccag gtacaggctt tcttgcgtga
    32401 tgcggcacag acgttcgccc atgatggtcg gcttaccgac gataaacatt ttcgaggtat
    32461 cgccgtggaa accatctttg attacggtga catcaatgtt aacgatatcg ccatctttca
    32521 gcagcttcgc atcgtccggg ataccgtggc acaccacttc attaatagag atgcaaacgg
    32581 atttcggata gccgtgatag ccgaggcagg cagaaaccgc gtgttgttca ttaacaatgt
    32641 aatcattaca gatgcgatcc agctcgccgg tgctgacgcc cggtttaaca tacggttcga
    32701 tcatctccag cacttcggca gccagtcggc cagcgacgcg cattttttcg atatcttctg
    32761 gggtcttgat tgagatagcc attaattctg tccatcagcg tcggtgatac cgacaatata
    32821 tatgtaagtg ccgtcaatgg tatcacaccc gggcaaattg agaatcattc tgaatttcgc
    32881 caaacgtgcc actgaacgtt ttctataata gaaaattcaa cgtctgatgc tgtacacagc
    32941 gccaacaatt attggtgtcc atgacgtatt tgtggtataa agcgcgccgg acttccgatc
    33001 catttcgtat acacagactg gacggaagcg acaatctcac tttgtgtaac aacacacacg
    33061 tatcggcaca tattccgggg tgccctttgg ggtcggtaat atgggatacg tggaggcata
    33121 accccaactt ttatatagag gttttaatca tggcaactgt ttccatgcgc gacatgctca
    33181 aggctggtgt tcacttcggt caccagaccc gttactggaa cccgaaaatg aagccgttca
    33241 tcttcggtgc gcgtaacaaa gttcacatca tcaaccttga gaaaactgta ccgatgttca
    33301 acgaagctct ggctgaactg aacaagattg cttctcgcaa aggtaaaatc cttttcgttg
    33361 gtactaaacg cgctgcaagc gaagcggtga aagacgctgc tctgagctgc gaccagttct
    33421 tcgtgaacca tcgctggctg ggcggtatgc tgactaactg gaaaaccgtt cgtcagtcca
    33481 tcaaacgtct gaaagaccta gaaactcagt ctcaggacgg tactttcgaa aagctgacca
    33541 agaaagaagc gctgatgcgc actcgtgagc tggagaaact ggaaaacagc ctgggcggta
    33601 tcaaagacat gggcggtctg ccggacgctc tgtttgtaat cgatgctgac cacgaacaca
    33661 ttgctatcaa agaagcaaac aacctgggta ttccggtatt tgctatcgtt gataccaact
    33721 ctgatccgga cggtgttgac ttcgttatcc cgggtaacga cgacgcaatc cgtgctgtga
    33781 ccctgtacct gggcgctgtt gctgcaaccg tacgtgaagg ccgttctcag gatctggctt
    33841 cccaggcgga agaaagcttc gtagaagctg agtaataagg cttgataact cccccaaaat
    33901 agttcgagtt gcagaaaggc ggcaagctcg agaattcccg ggagcttaca tcagtaagtg
    33961 accgggatga gcgagcgaag ataacgcatc tgcggcgcga aatatgaagg gggagagccc
    34021 ttatagacca ggtagtacac gtttggttag ggggcctgca tatggccccc tttttcactt
    34081 ttatatctgt gcggtttaat gccgggcaga tcacatctcc gaggatttta gaatggctga
    34141 aattaccgca tccctggtaa aagagctgcg tgagcgtact ggcgcaggca tgatggattg
    34201 caaaaaagca ctgactgaag ctaacggcga catcgagctg gcaatcgaaa acatgcgtaa
    34261 gtccggtgct attaaagcag cgaaaaaagc aggcaacgtt gctgctgacg gcgtgatcaa
    34321 aaccaaaatc gacggcaact acggcatcat tctggaagtt aactgccaga ctgacttcgt
    34381 tgcaaaagac gctggtttcc aggcgttcgc agacaaagtt ctggacgcag ctgttgctgg
    34441 caaaatcact gacgttgaag ttctgaaagc acagttcgaa gaagaacgtg ttgcgctggt
    34501 agcgaaaatt ggtgaaaaca tcaacattcg ccgcgttgct gcgctggaag gcgacgttct
    34561 gggttcttat cagcacggtg cgcgtatcgg cgttctggtt gctgctaaag gcgctgacga
    34621 agagctggtt aaacacatcg ctatgcacgt tgctgcaagc aagccagaat tcatcaaacc
    34681 agaagacgta tccgctgaag tggtagaaaa agaataccag gtacagctgg atatcgcgat
    34741 gcagtctggt aagccgaaag aaatcgcaga gaaaatggtt gaaggccgca tgaagaaatt
    34801 caccggcgaa gtttctctga ccggtcagcc gttcgttatg gaaccaagca aaactgttgg
    34861 tcagctgctg aaagagcata acgctgaagt gactggcttc atccgcttcg aagtgggtga
    34921 aggcatcgag aaagttgaga ctgactttgc agcagaagtt gctgcgatgt ccaagcagtc
    34981 ttaattatca aaaaggagcc gcctgagggc ggcttctttt tgtgcccatc ttgtaaattc
    35041 agctaaccct tgtggggctg cgctgaaaag cgacgtacaa tgtcgctagt attaattcat
    35101 ttcaatcgtt gacagtctca ggaaagaaac atggctacca atgcaaaacc cgtctataaa
    35161 cgcattctgc ttaagttgag tggcgaagct ctgcagggca ctgaaggctt cggtattgat
    35221 gcaagcatac tggatcgtat ggctcaggaa atcaaagaac tggttgaact gggtattcag
    35281 gttggtgtgg tgattggtgg gggtaacctg ttccgtggcg ctggtctggc gaaagcgggt
    35341 atgaaccgcg ttgtgggcga ccacatgggg atgctggcga ccgtaatgaa cggcctggca
    35401 atgcgtgatg cactgcaccg cgcctatgtg aacgctcgtc tgatgtccgc tattccattg
    35461 aatggcgtgt gcgacagcta cagctgggca gaagctatca gcctgttgcg caacaaccgt
    35521 gtggtgatcc tctccgccgg tacaggtaac ccgttcttta ccaccgactc agcagcttgc
    35581 ctgcgtggta tcgaaattga agccgatgtg gtgctgaaag caaccaaagt tgacggcgtg
    35641 tttaccgctg atccggcgaa agatccaacc gcaaccatgt acgagcaact gacttacagc
    35701 gaagtgctgg aaaaagagct gaaagtcatg gacctggcgg ccttcacgct ggctcgtgac
    35761 cataaattac cgattcgtgt tttcaatatg aacaaaccgg gtgcgctgcg ccgtgtggta
    35821 atgggtgaaa aagaagggac tttaatcacg gaataattcc cgtgatggat aaataagggt
    35881 aagattccgc gtaagtatcg cgggggcgta agtctggtta taaggcgtta ttgttgcagg
    35941 cagtttggtc acggccagcg cgcagcaacc ggagcgtaca aaagtacgtg aggatggcga
    36001 gcactgctcg gggccaaaat ggcaaataaa atagcctaat aatccagacg attacccgta
    36061 atatgtttaa tcagggctat acttagcaca cttccactgt gtgtgactgt ctggtctgac
    36121 tgagacaagt tttcaaggat tcgtaacgtg attagcgata tcagaaaaga tgctgaagta
    36181 cgcatggaca aatgcgtaga agcgttcaaa acccaaatca gcaaaatacg cacgggtcgt
    36241 gcttctccca gcctgctgga tggcattgtc gtggaatatt acggcacgcc gacgccgctg
    36301 cgtcagctgg caagcgtaac ggtagaagat tcccgtactc tgaaaatcaa cgtgtttgat
    36361 cgttcaatgt ctccggccgt tgaaaaagcg attatggcgt ccgatcttgg cctgaacccg
    36421 aactctgcgg gtagcgacat ccgtgttccg ctgccgccgc tgacggaaga acgtcgtaaa
    36481 gatctgacca aaatcgttcg tggtgaagca gaacaagcgc gtgttgcagt acgtaacgtg
    36541 cgtcgtgacg cgaacgacaa agtgaaagca ctgttgaaag ataaagagat cagcgaagac
    36601 gacgatcgcc gttctcagga cgatgtacag aaactgactg atgctgcaat caagaaaatt
    36661 gaagcggcgc tggcagacaa agaagcagaa ctgatgcagt tctgatttct tgaacgacaa
    36721 aaacgccgct cagtagatcc ttgcggatcg gctggcggcg ttttgctttt tattctgtct
    36781 caactctgga tgtttcatga agcaactcac cattctgggc tcgaccggct cgattggttg
    36841 cagcacgctg gacgtggtgc gccataatcc cgaacacttc cgcgtagttg cgctggtggc
    36901 aggcaaaaat gtcactcgca tggtagaaca gtgcctggaa ttctctcccc gctatgccgt
    36961 aatggacgat gaagcgagtg cgaaacttct taaaacgatg ctacagcaac agggtagccg
    37021 caccgaagtc ttaagcgggc aacaagccgc ttgcgatatg gcagcgcttg aggatgttga
    37081 tcaggtgatg gcagccattg ttggcgctgc tgggctgtta cctacgcttg ctgcgatccg
    37141 cgcgggtaaa accattttgc tggccaataa agaatcactg gttacctgcg gacgtctgtt
    37201 tatggacgcc gtaaagcaga gcaaagcgca attgttaccg gtcgatagcg aacataacgc
    37261 catttttcag agtttaccgc aacctatcca gcataatctg ggatacgctg accttgagca
    37321 aaatggcgtg gtgtccattt tacttaccgg gtctggtggc cctttccgtg agacgccatt
    37381 gcgcgatttg gcaacaatga cgccggatca agcctgccgt catccgaact ggtcgatggg
    37441 gcgtaaaatt tctgtcgatt cggctaccat gatgaacaaa ggtctggaat acattgaagc
    37501 gcgttggctg tttaacgcca gcgccagcca gatggaagtg ctgattcacc cgcagtcagt
    37561 gattcactca atggtgcgct atcaggacgg cagtgttctg gcgcagctgg gggaaccgga
    37621 tatgcgtacg ccaattgccc acaccatggc atggccgaat cgcgtgaact ctggcgtgaa
    37681 gccgctcgat ttttgcaaac taagtgcgtt gacatttgcc gcaccggatt atgatcgtta
    37741 tccatgcctg aaactggcga tggaggcgtt cgaacaaggt caggcagcga cgacagcatt
    37801 gaatgccgca aacgaaatca ccgttgctgc ttttcttgcg caacaaatcc gctttacgga
    37861 tatcgctgcg ttgaatttat cggtactgga aaaaatggat atgcgcgaac cacaatgtgt
    37921 ggacgatgtg ttatctgttg atgcgaacgc gcgtgaagtc gccagaaaag aggtgatgcg
    37981 tctcgcaagc tgaggataat ccggctacag agagtctcgc tatttgttag cgtagggctt
    38041 cagtgatata gtctgcgcca tctgatcgta agtagttggc tttataaggt caggtatgcc
    38101 gtggttttgc acggcttttt tttgtatagg cttcagtatt cctgagtacc gtaaaccctg
    38161 tcagggaata aaaaacgcgt gatgttgtct gctactcaac cacttagcga aaaattgcca
    38221 gcgcatggct gccgtcatgt tgcgatcatt atggacggca atggtcgctg ggcaaaaaag
    38281 caagggaaga ttcgtgcctt tgggcataaa gccggggcaa aatccgtccg ccgggctgtc
    38341 tcttttgcgg ccaacaacgg tattgaggcg ttaacgctgt atgcctttag tagtgaaaac
    38401 tggaaccgac cagcgcagga agtcagtgcg ttaatggaac tgtttgtgtg ggcgctcgat
    38461 agcgaagtaa aaagtctgca ccgacataac gtgcgtctgc gtattattgg cgataccagt
    38521 cgctttaact cgcgtttgca agaatgtatt cgtaaatctg aagcgctaac agccgggaat
    38581 accggtctga cgctgaatat tgcggcgaac tacggtggac gttgggatat agtccaggga
    38641 gtcaggcaac tggctgaaaa ggtgcagcaa ggaaacctgc aaccagatca gatagatgaa
    38701 gagatgctaa accagcatgt ctgtatgcat gaactggccc ctgtagattt agtaattagg
    38761 actggggggg agcatcgcat tagtaacttt ttgctttggc aaattgccta tgccgaactt
    38821 tactttacag atgttctctg gcccgatttc gatgaacaag actttgaagg ggcgttaaat
    38881 gcctttgcta atcgagagcg tcgtttcggc ggcaccgagc ccggtgatga aacagcctga
    38941 tggggggcgc ttttgctgaa gtatcgcctg atatctgctt ttgtgttaat acccgtcgtc
    39001 atcgcggcgt tgtttctgtt gccgccggtg gggttcgcca ttgtaacgct ggtggtctgc
    39061 atgctggcag cgtgggaatg gggacagctt agcggtttta ccactcgttc gcagcgagta
    39121 tggttggcgg tgttatgcgg gttattgttg gcgctgatgc tttttctgtt gccggaatat
    39181 caccgaaata ttcatcaacc gctggttgaa atctcacttt gggcttcgct gggttggtgg
    39241 attgtcgcgc tattgctggt gctgttttac ccaggttccg cagcaatctg gcgtaattct
    39301 aaaacattgc gccttatttt tggcgtgcta accattgttc ccttcttctg gggcatgctg
    39361 gcgttacggg cctggcacta tgacgagaat cattacagtg gcgcaatatg gctgctctat
    39421 gtcatgatcc tggtatgggg cgctgactcc ggcgcatata tgtttggcaa attgtttggt
    39481 aaacataagc tggcaccgaa ggtttctccg ggtaaaacct ggcaaggctt tataggtgga
    39541 ctcgctactg cagcggtaat ctcatggggt tatggcatgt gggcgaatct cgacgtcgct
    39601 cccgtcacct tactcatttg ctctattgtc gcagcgttag cctcagtgct cggcgatctg
    39661 accgagagta tgtttaagcg tgaagcagga attaaggaca gcggtcattt aattccagga
    39721 cacggtggta ttttagatcg tattgatagc ctgacggctg cggtaccggt ctttgcttgc
    39781 ttgttgttac tggtattcag gacgctttaa cggaaggtaa tatgctgagt tttctctggg
    39841 atttggcttc gttcatcgtt gcactgggtg tacttatcac cgtgcatgaa tttggtcatt
    39901 tctgggttgc ccggcgttgt ggtgttcgcg ttgagcgttt ctcaataggg tttggtaagg
    39961 cgctctggcg gcgaactgat aagctcggca ccgaatatgt tatcgccctg atcccgctgg
    40021 gcggttatgt caaaatgctg gatgagcgcg cagaaccggt cgttccggaa ctccgccacc
    40081 atgccttcaa taataaatct gttggccaac gagcggcgat tattgccgca ggtccggttg
    40141 caaacttcat ttttgctatc tttgcctact ggctggtttt tattattggt gtgcctggcg
    40201 tacgtccggt ggttggtgaa atggcagcca attcgatagc tgcggaagca caaattgcac
    40261 caggtacgga actaaaagcc gtagatggta tcgaaacgcc tgattgggat gccgtgcgtt
    40321 tgcagttggt cgataaaatt ggcgatgaaa gcaccaccat tacagtagcg ccatttggca
    40381 gcgaccaacg gcgggatgta aagctcgatt tacgtcactg ggcgtttgag cctgataaag
    40441 aagatccggt atcttcgctg gggattcgtc ctcgtgggct gcaaattgaa cctgtactgg
    40501 aaaatgtgca gccaaactcg gcggcaagca aggcaggttt gcaagcaggc gacaggatcg
    40561 ttaaagtcga tggtcagccc ttaacgcagt gggtgacctt tgtgatgctt gtccgggata
    40621 acccgggtaa atccttagcg ttagaaatcg aaaggcaggg aagtcccttg tctttgacat
    40681 taatcccgga gagtaaaccg ggtaatggta aagcgattgg ttttgtcggt attgagccga
    40741 aagtcattcc tttgccagat gagtataaag ttgtacgcca gtatgggccg ttcaacgcca
    40801 tcgtcgaagc cacggacaaa acgtggcagc tgatgaagct gacggtcagt atgctgggaa
    40861 aattgatcac cggtgatgtg aaactgaaca acctcagtgg gccgatctct atcgccaagg
    40921 gggctgggat gacagcggaa ctcggggtag tttattacct gccgtttctt gcgcttatta
    40981 gcgtgaactt agggataatt aacctgtttc cgttgcccgt acttgacggg gcgcatctgc
    41041 tgttccttgc gatcgaaaag atcaagggcg gaccggtatc cgagcgggtt caagactttt
    41101 gttatcgcat tggctcgatt ctgctggtgc tgttaatggg gcttgcactt ttcaatgatt
    41161 tctctcggtt atgagagtta gttaggaaga acgcataata acgatggcga tgaaaaagtt
    41221 gctcatagcg tcgctgctgt ttagcagcgc caccgtatac ggtgctgaag ggttcgtagt
    41281 gaaagatatt catttcgaag gccttcagcg tgtcgccgtt ggtgcggccc tcctcagtat
    41341 gccggtgcgt acaggcgaca cggttaatga tgaagatatc agtaatacca ttcgcgctct
    41401 gtttgctacc ggcaactttg aggatgttcg cgtccttcgt gatggtgata cccttctggt
    41461 tcaggtaaaa gaacgtccga ccattgccag cattactttc tccggtaaca aatcggtgaa
    41521 agatgacatg ctgaagcaaa acctcgaggc ttctggtgtg cgtgtgggcg aatccctcga
    41581 tcgcaccacc attgccgata tcgagaaagg tctggaagac ttctactaca gcgtcggtaa
    41641 atatagcgcc agcgtaaaag ctgtcgtgac cccgctgccg cgcaaccgtg ttgacctaaa
    41701 actggtgttc caggaaggtg tgtcagctga aatccagcaa attaacattg ttggtaacca
    41761 tgctttcacc accgacgaac tgatctctca tttccaactg cgtgacgaag tgccgtggtg
    41821 gaacgtggta ggcgatcgta aataccagaa acagaaactg gcgggcgacc ttgaaaccct
    41881 gcgcagctac tatctggatc gcggttatgc ccgtttcaac atcgactcta cccaggtcag
    41941 tctgacgcca gataaaaaag gtatttacgt cacggtgaac attaccgaag gcgatcagta
    42001 caagctttct ggcgttgaag tgagcggcaa ccttgccggg cactccgctg aaattgagca
    42061 gctgactaag atcgagccgg gcgagctgta taacggcacc aaagtgacca agatggaaga
    42121 tgacatcaaa aagcttctcg gtcgctatgg ttatgcctat ccgcgcgtac agtcgatgcc
    42181 tgaaattaac gatgccgaca aaaccgttaa attacgcgtg aacgttgatg cgggtaaccg
    42241 tttctacgtg cgtaagatcc gttttgaagg taacgatacc tcgaaagatg ccgtcctgcg
    42301 tcgcgaaatg cgtcagatgg aaggtgcatg gctgggaagc gatctggtcg atcagggtaa
    42361 ggagcgtctg aatcgtctgg gcttctttga aactgtcgat accgataccc aacgtgttcc
    42421 gggtagcccg gaccaagtag atgtagtcta caaggtgaaa gaacgtaaca ccggtagctt
    42481 caacttcggg attggttacg gtactgaaag tggcgtgagc ttccaggctg gcgtgcaaca
    42541 ggataactgg ttaggtacag gttatgctgt tggtatcaac gggaccaaaa acgattacca
    42601 gacctatgct gaattgtcgg taaccaaccc gtacttcact gtagatggtg taagcctcgg
    42661 tggtcgtctc ttctataatg acttccaggc agatgacgcc gacctgtccg actataccaa
    42721 caagagttat ggtacagacg tgacgttggg cttcccgatc aacgaatata actcgctgcg
    42781 tgcaggtctg ggttatgtac ataactccct gtccaacatg cagcctcagg ttgcgatgtg
    42841 gcgttatctg tactctatgg gtgaacatcc gagcacctct gatcaggata acagcttcaa
    42901 aacggacgac ttcacgttca actatggttg gacctataac aagcttgacc gtggttactt
    42961 cccgacagat ggttcacgtg tcaacctgac cggtaaagtg accattcctg gatcggataa
    43021 cgaatactac aaagtgacgt tagacacggc gacttatgtg ccgatcgatg acgatcacaa
    43081 atgggttgtt ctggggcgta cccgctgggg ttatggtgat ggtttaggcg gcaaagagat
    43141 gccgttctac gagaacttct atgccggtgg ttccagcacc gtccgtggct tccagtccaa
    43201 taccattggt ccgaaagcag tttacttccc gcatcaggcc agtaattatg atccggacta
    43261 tgattacgaa tgtgcgactc aggacggcgc gaaagacctg tgtaaatcgg atgatgctgt
    43321 aggcggtaac gccatggcgg ttgccagcct cgagttcatc accccgacgc cgtttattag
    43381 cgataagtat gctaactcgg ttcgtacttc cttcttctgg gatatgggta ccgtttggga
    43441 tacaaactgg gattccagcc aatattctgg atatccggac tatagtgatc caagcaatat
    43501 ccgtatgtct gcgggtatcg cattacaatg gatgtcccca ttggggccgt tggtgttctc
    43561 ctacgcccag ccgttcaaaa agtacgatgg agacaaggca gaacagttcc agtttaacat
    43621 cggtaaaacc tggtaagtgt tctccacaaa ggaatgtagt ggtagtgtag cgatgacttt
    43681 aggcgatcaa tataagatcg ccgggccacg caaagaactg caccctccgg tgcaaatggg
    43741 atggtaagga gtttattgtg aaaaagtggt tattagcggc aggtctcggt ttagcactgg
    43801 caacttctgc tcaggcggct gacaaaattg caatcgtcaa tatgggcagc ctgttccagc
    43861 aggtagcgca gaaaaccggt gtttctaaca cgctggaaaa tgagttcaaa ggccgtgcca
    43921 gcgaactgca gcgtatggaa accgatctgc aggctaaaat gaaaaagctg cagtccatga
    43981 aagcgggcag cgatcgcact aagctggaaa aagacgtgat ggctcagcgc cagacttttg
    44041 ctcagaaagc gcaggctttt gagcaggatc gcgcacgtcg ttccaacgaa gaacgcggca
    44101 aactggttac tcgtatccag actgctgtga aatccgttgc caacagccag gatatcgatc
    44161 tggttgttga tgcaaacgcc gttgcttaca acagcagcga tgtaaaagac atcactgccg
    44221 acgtactgaa acaggttaaa taagtaatgc cttcaattcg actggctgat ttagcgcagc
    44281 agttggatgc agaactacac ggtgatggcg atatcgtcat caccggcgtt gcgtccatgc
    44341 aatctgcaca aacaggtcac attacgttca tggttaaccc aaaataccgt gagcatttag
    44401 gcttgtgcca ggcgtccgcg gttgtcatga cccaggacga tcttcctttc gcgaaaagtg
    44461 ctgcgctggt agtgaagaat ccctacctga cttacgcgcg catggcgcaa attttagata
    44521 ccacgccgca gcccgcgcag aacattgcac ccagtgcggt gatcgacgcg acggcgaagc
    44581 tggggaacaa tgtatcgatt ggcgctaacg cggtgattga atccggcgtt gaactgggcg
    44641 ataacgtgat tatcggtgcc ggttgcttcg taggtaaaaa cagcaaaatc ggtgcaggtt
    44701 cgcgtctctg ggcgaacgta accatttacc atgagatcca gatcggtcag aattgcctga
    44761 tccagtccgg aacagtggta ggcgcagacg gctttggtta tgccaacgat cgtggtaact
    44821 gggttaagat cccacagatt ggtcgcgtaa ttattggcga tcgcgtggag atcggtgcct
    44881 gcactaccat cgatcgcggc gcgctggatg acactgttat tggcaatggc gtgatcattg
    44941 ataaccagtg ccagattgca cataacgtcg tgattggcga caatacggcg gttgccggtg
    45001 gcgtcattat ggcgggcagc ctgaaaattg gtcgttactg catgatcggc ggagccagcg
    45061 taatcaacgg gcatatggaa atatgcgaca aagtgacggt tacgggcatg ggtatggtga
    45121 tgcgtcccat cactgaacca ggcgtctatt cctcaggcat tccgctgcaa cccaacaaag
    45181 tctggcgcaa aaccgctgca ctggtgatga acattgatga catgagcaag cgtctgaaat
    45241 cgcttgagcg caaggttaat caacaagact aacgttccat cttttgttcg ccaaacttta
    45301 cggcctgtct cattcttacg attgcggcag gccgtgttat tattgtcgtt tcttatattt
    45361 tgacaggaag agtatcttga ctactaacac tcatactctg cagattgaag agattttaga
    45421 acttctgccg caccgtttcc cgttcttact ggtggatcgc gtgctggatt ttgaagaagg
    45481 tcgttttctg cgcgcagtaa aaaatgtctc tgtcaatgag ccattcttcc agggccattt
    45541 ccctggaaaa ccgattttcc cgggtgtgct gattctggaa gcaatggcac aggcaacagg
    45601 tattctggcg tttaaaagcg taggaaaact ggaaccgggt gagctgtact acttcgctgg
    45661 tattgacgaa gcgcgcttca agcgcccggt cgtgcctggc gatcaaatga tcatggaagt
    45721 cactttcgaa aaaacgcgcc gcggcctgac ccgttttaaa ggggttgctc tggtcgatgg
    45781 taaagtagtt tgcgaagcaa cgatgatgtg tgctcgtagc cgggaggcct gatacgtgat
    45841 tgataaatcc gcctttgtgc atccaaccgc cattgtggaa gagggcgcgt caattggcgc
    45901 gaacgcacac attggtcctt tttgtatcgt tggaccccat gtcggaattg gtgagggtac
    45961 cgtactgaaa tctcacgttg tcgtgaatgg tcatactaaa attggccgcg ataatgagat
    46021 ttatcagttc gcctccatcg gcgaagttaa ccaggatctg aaatatgctg gcgaaccgac
    46081 ccgtgtggaa atcggcgatc gtaaccgcat tcgcgaaagc gtcaccattc atcgtggcac
    46141 agtccagggc ggtggattga cgaaggtggg cagcgacaac ttactgatga tcaacgcgca
    46201 cattgcgcac gattgtacgg taggtaaccg ctgtattctc gccaacaacg caacgctggc
    46261 gggtcacgta tcggttgacg acttcgcgat catcggcggc atgaccgcag tccatcagtt
    46321 ctgcatcatt ggtgcgcacg tgatggttgg cggctgctcc ggtgtggcgc aggacgtccc
    46381 tccttatgtc attgcgcagg gtaaccacgc aacgccgttc ggtgtcaata tcgaagggct
    46441 gaagcgccgc ggattcagcc gtgaggcgat taccgctatc cgcaatgcgt ataagctgat
    46501 ttatcgtagc ggtaaaacgc tcgatgaagt gaaaccggaa attgctgaac tggcggaaac
    46561 atatccggaa gtgaaagcct ttaccgattt cttttcacgc tcaacgcgcg gtctgattcg
    46621 ttaatgactg aacagcgtcc attaacgatt gccctggtcg ccggagaaac ctccggcgat
    46681 atcctggggg ccggtttaat ccgcgctctg aaagaacgtg tgcccaacgc ccgctttgtt
    46741 ggtgttgccg ggccacgaat gcaggctgaa ggctgcgaag cctggtacga aatggaagaa
    46801 ctggcggtga tgggcattgt tgaagtgctc ggtcgtctgc gtcgcttact gcatattcgt
    46861 gccgatctga caaagcgttt tggcgaactg aagccagatg tttttgttgg tattgatgcg
    46921 cctgacttca atattactct tgaaggtaac ctcaaaaagc agggtatcaa aaccattcat
    46981 tacgtcagtc cgtcagtctg ggcgtggcga cagaaacgtg ttttcaaaat aggcagagcc
    47041 accgatctgg tgctcgcatt tctgcctttc gaaaaagcgt tttatgacaa atacaacgta
    47101 ccgtgccgct ttatcggtca taccatggct gatgccatgc cattagatcc agataaaaat
    47161 gccgcccgtg atgtgctggg gatccctcac gatgcccact gcctggcgtt gctaccgggg
    47221 agccgtggtg cagaagttga aatgcttagt gccgatttcc tgaaaacggc ccagcttttg
    47281 cgccagacat atccggatct cgaaatcgtg gtgccactgg tgaatgccaa acgccgcgag
    47341 cagtttgaac gcatcaaagc tgaagtcgcg ccagactttt cagttcattt gctggatggg
    47401 atgggccgtg aggcgatggt cgccagcgat gcggcgctac tggcgtcggg tacggcagcc
    47461 ctggagtgta tgctggcgaa atgcccgatg gtggtgggat atcgcatgaa gccttttacc
    47521 ttctggttgg cgaagcggct ggtgaaaact gattatgtct cgctgccaaa tctgctggcg
    47581 ggcagagagt tagtcaaaga gttattgcag gaagagtgtg agccgcaaaa actggctgcg
    47641 gcgctgttac cgctgttggc gaacgggaaa atcagccacg cgatgcacga taccttccgt
    47701 gaactgcatc agcagatccg ctgcaatgcc gatgagcagg cggcacaagc cgttctggag
    47761 ttagcacaat gatcgaattt gtttatccgc acacgcagct ggttgcgggt gtggatgaag
    47821 tcggacgcgg gccgttagtt ggcgcggtcg tcaccgctgc ggtgatcctt gacccggcgc
    47881 gcccgattgc cgggctgaat gattccaaaa agctgagcga aaaacgccgt ctggcgctct
    47941 gtgaagagat caaagagaaa gcgttgagct ggagtctggg ccgcgcggaa ccccacgaaa
    48001 tcgacgagct gaacattctt catgcgacca tgctggcgat gcagcgtgcc gtcgctgggc
    48061 tgcatattgc gccggaatat gtgttgattg atggtaaccg ctgcccgaaa ttaccgatgc
    48121 ctgcgatggc tgtggtgaaa ggcgatagcc gcgtaccgga aatcagtgcc gcgtctatcc
    48181 tggcgaaagt gacgcgtgac gccgaaatgg cggcgctgga tattgttttc ccgcaatatg
    48241 gttttgccca acacaaaggg tacccaaccg cttttcatct ggaaaaactg gctgaacacg
    48301 gcgcgaccga acaccatcgg cgcagctttg ggcctgtcaa acgcgcactg ggacttgcgt
    48361 cctgattctt gtgtcgagat taagtaaacc ggaatctgaa gatgtctgaa ccacgtttcg
    48421 tacacctgcg ggtgcacagc gactactcga tgatcgatgg cctggccaaa actgcaccgt
    48481 tggtaaaaaa ggcggcggcg ttgggtatgc cagcactggc gatcaccgat ttcaccaacc
    48541 tttgtggtct ggtgaagttc tacggagcgg gacatggcgc agggattaag cctatcgtcg
    48601 gggcagattt taacgtccag tgcgacctgc tgggtgatga gttaacccac ctgacggtac
    48661 tggcggcgaa caataccggc tatcagaatc tgacgttgct gatctcaaaa gcgtatcagc
    48721 gcgggtacgg tgccgctggg ccgatcatcg atcgcgactg gcttatcgaa ttaaatgaag
    48781 ggttgatcct tctttccggc gggcgcatgg gcgacgtcgg acgcagtctt ttgcgtggta
    48841 acagcgcgct ggtagatgag tgtgtcgcgt tttatgaaga acacttcccg gatcgctatt
    48901 ttctcgagct gatccgcacc ggcaggctgg atgaagaaag ctatctgcac gcggcggtgg
    48961 aactggcgga agcgcgcggt ttgcccgtcg tggcgactaa cgatgtgcgc tttatcgaca
    49021 gcagcgactt tgacgcacac gaaatccgcg tcgcgatcca cgacggcttt accctcgacg
    49081 atcctaaacg cccgcgtaac tattcgccgc agcaatatat gcgtagcgaa gaggagatgt
    49141 gtgagctgtt tgccgacatc cccgaagccc ttgccaacac cgttgagatc gccaaacgct
    49201 gtaacgtaac tgtgcgtctt ggtgaatact tcctgccgca gttcccgacc ggggacatga
    49261 gcaccgaaga ttatctggtc aagcgtgcaa aagagggcct ggaagagcgt ctggcctttt
    49321 tattccctga cgaggaagaa cgtgttaagc gccgcccgga atatgacgaa cgtctggaga
    49381 ctgaacttca ggttatcaac cagatgggct tcccgggcta cttcctcatc gttatggaat
    49441 ttatccagtg gtcgaaagat aacggcgtac cggtagggcc aggccgtggc tccggtgcgg
    49501 gttcactggt ggcctacgcg ctgaaaatca ccgacctcga tccgctggaa tttgacctgc
    49561 tgttcgaacg tttccttaac ccggaacgtg tctccatgcc tgacttcgac gttgacttct
    49621 gtatggagaa acgcgatcag gttatcgagc acgtagcgga catgtacggt cgtgatgcgg
    49681 tatcgcagat catcaccttc ggtacaatgg cggcgaaagc ggtgatccgc gacgtaggcc
    49741 gcgtgctggg gcatccgtac ggctttgtcg atcgtatctc gaaactgatc ccgcccgatc
    49801 cggggatgac gctggcgaaa gcgtttgaag ccgagccgca gctgccggaa atctacgaag
    49861 cggatgaaga agttaaggcg ctgatcgaca tggcgcgcaa actggaaggg gtcacccgta
    49921 acgccggtaa gcacgccggt ggggtggtta tcgcgccgac caaaattacc gattttgcgc
    49981 cgctttactg cgatgaagag ggcaaacatc cggtcaccca gtttgataaa agcgacgttg
    50041 aatacgccgg actggtgaag ttcgacttcc ttggtttgcg tacgctcacc atcatcaact
    50101 gggcgctgga gatgatcaac aagcggcggg cgaagaatgg cgagccgccg ctggatatcg
    50161 ccgcgatccc gctggatgac aagaaaagct tcgacatgct gcaacgctcg gaaaccacgg
    50221 cggtattcca gcttgaatcg cgcggcatga aggacctgat caagcgtctg caacctgact
    50281 gcttcgaaga tatgatcgca ctggtggcgc tgttccgccc aggtccgttg caatcaggga
    50341 tggtggataa ctttatcgac cgtaaacatg gtcgcgaaga aatctcctat ccggacgtac
    50401 agtggcagca tgaaagcctg aaaccggtac tggagccaac ctacggcatc atcctgtatc
    50461 aggaacaggt catgcagatt gcgcaggtgc tttctggtta taccctcggt ggcgcggata
    50521 tgctgcgtcg tgcgatgggt aagaaaaagc cggaagagat ggctaagcag cgttctgtat
    50581 ttgctgaagg tgcagaaaag aacggaatca acgccgaact ggcgatgaaa atcttcgacc
    50641 tggtggagaa attcgcgggt tacggattta acaaatcgca ctctgcggcc tatgctttgg
    50701 tgtcatatca aacgttatgg ctgaaagcgc actatccggc ggagtttatg gcggcggtaa
    50761 tgaccgccga tatggacaac accgagaagg tggtgggcct ggtggatgag tgctggcgga
    50821 tggggctgaa aatcctgcca ccagatataa actccggtct ttaccatttc cacgtcaacg
    50881 acgacggcga aatcgtgtat ggtattggcg ccatcaaagg ggtaggtgaa ggtccgattg
    50941 aggccatcat cgaagcccgt aataaaggcg gctacttccg cgaactgttt gatctctgcg
    51001 cccgtaccga caccaaaaag ttaaaccggc gggtgctgga aaaactgatc atgtccgggg
    51061 cgtttgaccg tcttgggcca caccgcgcgg cgctgatgaa ctcgctgggt gatgcgttaa
    51121 aagcggcaga tcaacacgcg aaagcggaag ctatcggtca ggccgatatg ttcggcgtgc
    51181 tggccgaaga gccggaacaa attgaacaat cctacgccag ctgccaaccg tggccggagc
    51241 aggtggtgtt agatggggaa cgtgaaacgt taggtctgta ccttacggga caccctatca
    51301 accagtattt aaaagagatt gagcgttatg tcggaggcgt aaggctgaaa gacatgcacc
    51361 cgacagaacg tggtaaagtc atcacggctg cggggctcgt tgttgccgcg cgggttatgg
    51421 tcaccaagcg cggcaatcgt atcggtatct gcacgctgga tgaccgttcc gggcggctgg
    51481 aagtgatgtt gtttactgac gccctggata aataccagca attgctggaa aaagaccgca
    51541 tacttatcgt cagcggacag gtcagctttg atgacttcag cggtgggctt aaaatgaccg
    51601 ctcgcgaagt gatggatatt gacgaagccc gggaaaaata tgctagcggg cttgctatct
    51661 cgctgacgga caggcaaatt gatgaccagc ttttaaaccg actccgtcag tctctggaac
    51721 cccaccgctc tgggacaatt ccagtacatc tctactatca gagggcggat gcacgcgcgc
    51781 ggttgcgttt tggcgcgacg tggcgtgtct ctccgagcga tcgtttatta aacgatctcc
    51841 gtggcctcat tggttcggag caggtggaac tggagtttga ctaatacagg aatactatga
    51901 gtctgaattt ccttgatttt gaacagccga ttgcagagct ggaagcgaaa atcgattctc
    51961 tgactgcggt tagccgtcag gatgagaaac tggatattaa catcgatgaa gaagtgcatc
    52021 gtctgcgtga aaaaagcgta gaactgacac gtaaaatctt cgccgatctc ggtgcatggc
    52081 agattgcgca actggcacgc catctacagc gtccttatac cctggattac gttcgcctgg
    52141 catttgatga atttgacgaa ctggctggcg accgcgcgta tgcagacgat aaagctatcg
    52201 tcggtggtat cgcccgtctt gacggtcgtc cggtgatgat cattggtcat caaaaaggtc
    52261 gtgaaaccaa agaaaaaatt cgccgtaact ttggtatgcc agcgccagaa ggttaccgca
    52321 aagcactgcg tctgatgcaa atggctgaac gctttaagat gcctatcatc acctttatcg
    52381 acaccccggg ggcttatcct ggcgtgggcg cagaagagcg tggtcagtct gaagccattg
    52441 cacgcaacct gcgtgaaatg tctcgcctcg gcgtaccggt agtttgtacg gttatcggtg
    52501 aaggtggttc tggcggtgcg ctggcgattg gcgtgggcga taaagtgaat atgctgcaat
    52561 acagcaccta ttccgttatc tcgccggaag gttgtgcgtc cattctgtgg aagagcgccg
    52621 acaaagcgcc gctggcggct gaagcgatgg gtatcatcgc tccgcgtctg aaagagctga
    52681 aactgatcga ctccatcatc ccggaaccgc tgggcggcgc tcaccgtaac ccggaagcga
    52741 tggcggcatc gttgaaagcg caactgctgg cggatctggc cgatctcgat gtgttaagca
    52801 ctgaagattt aaaaaatcgt cgttatcagc gcctgatgag ctacggttac gcgtaattcg
    52861 caaaagttct gaaaaagggt cacttcggtg gccctttttt atcgccacgg tttgagcagg
    52921 ctatgattaa ggaaggattt tccaggagga acacatgaac atcattgcca ttatgggacc
    52981 gcatggcgtc ttttataaag atgagcccat caaagaactg gagtcggcgc tggtggcgca
    53041 aggctttcag attatctggc cacaaaacag cgttgatttg ctgaaattta tcgaacataa
    53101 ccctcgaatt tgcggcgtga tttttgactg ggatgagtac agtctcgatt tatgcagcga
    53161 tatcaatcaa cttaatgaat atctcccgct ttatgccttc atcaacaccc actcgacgat
    53221 ggatgtcagc gtgcaggata tgcggatggc gctctggttt tttgaatatg cgctggggca
    53281 ggcggaagat atcgccattc gtatgcgtca gtacaccaac gaatatcttg ataacattac
    53341 gccgccgttc acgaaagcct tgtttaccta cgttaaagag cggaagtaca ccttttgtac
    53401 gccggggcat atgggcggca ccgcatatca aaaaagcccg gttggctgcc tgttttatga
    53461 ttttttcggc gggaataccc tcaaggctga tgtctctatt tcggtcaccg agcttggttc
    53521 gttgctcgac cacaccgggc cacacctgga agcggaagag tacatcgcgc ggacttttgg
    53581 cgcggaacag agttatatcg ttaccaacgg aacatcgacg tcgaacaaaa ttgtgggtat
    53641 gtacgccgcg ccatccggca gtacgctgtt gatcgaccgc aattgtcata aatcgctggc
    53701 gcatctgttg atgatgaacg atgtagtgcc agtctggctg aaaccgacgc gtaatgcgtt
    53761 ggggattctt ggtgggatcc cgcaccgtga atttactcgc gacagcatcg aagagaaagt
    53821 cgctgccacc acgcaggcac aatggccggt tcatgcggtg attaccaact ccacctatga
    53881 tggcttgctc tacaacaccg actggatcaa acagacgctg gatgtcccgt cgatccactt
    53941 cgattccgcc tgggtgccgt acacccattt tcatccgatc taccagggga aaagtggtat
    54001 gagcggcgag cgtgttgcgg gaaaagtgat cttcgaaacg caatcgaccc acaaaatgct
    54061 ggcggcgtta tcgcaggctt cgctgatcca cattaaaggc gagtatgacg aagaggcgtt
    54121 taacgaagcc tttatgatgc ataccaccac ctcgcccagt tatcccattg ttgcttcggt
    54181 tgagacggcg gcggcgatgc tgcgtggtaa tccgggcaaa cggctgatta accgttcggt
    54241 ggagcgggcg ctgcattttc gcaaagaggt ccagcggttg cgggaagagt ctgacggttg
    54301 gtttttcgat atctggcaac cgccgcaggt ggatgaagcc gaatgctggc ccgttgcgcc
    54361 aggcgaacag tggcacggct ttaacgatgc ggatgccgat catatgtttc tcgatcccgt
    54421 taaagtcact attttgacac cggggatgga cgaacagggc aatatgagcg aggaggggat
    54481 cccggcggcg ctggtggcaa aattcctcga cgaacgtggg atcgtagtag agaaaaccgg
    54541 cccttataac ctgctgtttc tctttagtat tggtatcgat aaaaccaaag caatgggatt
    54601 attgcgtggg ttgacggaat ttaaacgctc ttacgatctc aacctgcgga tcaaaaatat
    54661 gctacccgat ctctatgctg aagatcccga tttctaccgc aatatgcgta ttcaggatct
    54721 ggcgcaaggg atccataagc tgattcgtaa acacgatctt cccggtttga tgttgtgggc
    54781 attcgatact ttgccggaaa tgatcatgac gccacatcag gcatggcaga gacagattaa
    54841 aggtgaagta gaaaccattg cgctggaaca actggtcggt agagtatcgg caaatatgat
    54901 cctgccttat ccaccgggcg taccgctgtt gatgccagga gaaatgctga ccaaagagag
    54961 ccgcacggta ctcgattttc tactgatgct ttgttccgta gggcaacatt accccggttt
    55021 tgaaacggat attcacggcg cgaaacagga cgaagacggc gtttaccgcg tacgagtcct
    55081 aaaaatggcg ggataacttg ccagagcggc ttacgggcga gtaacgtgct gttaacaaat
    55141 aaaggagacg ttatgctggg tttaaaacag gttcaccata ttgcgattat tgcgacggat
    55201 tatgcggtga gcaaagcttt ctactgcgat attcttggtt tcacgctgca aagcgaagtc
    55261 tatcgcgaag cgcgcgactc gtggaaaggg gatttggcgc ttaatgggca atatgtgatt
    55321 gagcttttct cttttccgtt cccgccggag cgccccagcc gaccggaagc ttgcggcctg
    55381 cgtcatctgg cttttagcgt tgatgacatc gatgcggcag tggcgcacct tgaaagccat
    55441 aacgtgaagt gtgaagccat ccgtgtcgat ccatacacgc aaaaacgctt caccttcttt
    55501 aacgatccgg acgggctgcc gttggaactg tatgagcagt aaggcttgtc atcgccgcat
    55561 ttgcccggta acgtgccggg cattgctact gtaaaatcgc accatcatga cactcacgct
    55621 caatagacaa cttctcacct cacgccagat tttggtcgcc tttagcggcg ggcttgactc
    55681 caccgttctg ctgcatcagt tggtgcagtg gcggacggaa aatccgggcg tcactctgcg
    55741 cgctattcat gtgcatcacg gtttaagtgc caatgccgat gcctgggtta cgcattgcga
    55801 aaacgtctgc caacagtggc aggtgccgct ggtggtcgaa cgcgtacaac ttgcgcaaga
    55861 ggggctgggg attgaggccc aggcgcggca ggcgcgttat caggcatttg cccgtaccct
    55921 attgcccggc gaagtgctgg tcaccgcgca acatctcgac gatcaatgtg aaacctttct
    55981 gctggcgcta aaacgcggta gcggccctgc cgggctttcg gctatggcgg aagtttcgga
    56041 gtttgccgga acacggctta tccgcccgtt gcttgcccgc acgcgggggg aactggcgca
    56101 gtgggcattg gcgcatggtt tacgctggat tgaagacgaa agtaatcagg acgactcata
    56161 cgatcgtaac tttctgcgcc tgcgcgtagt gccgttattg cagcagcgtt ggccgcattt
    56221 tgcggaagca acggcccgca gcgccgcact ttgtgctgaa caagagagtc tgttggatga
    56281 actgctggcg gatgatttag cacactgcca aacgtcgcag gggacgctgc agattgcgcc
    56341 aatgctggcg atgagtgatg cccgccgcgc ggcgattatc cgtcgctggc tggcagggca
    56401 gaatgcacca atgccttccc gcgacgcgct ggtgcggatc tggcaggaag tggcgctggc
    56461 gcgggaagat gcctccccct gtttacgctt gggcgcgttt gaaatccgcc gctatcagtc
    56521 gcaactgtgg tggattaaat ccgtcaccgg gcaaagtgaa accattgtgc cgtggcagac
    56581 gtggctacaa ccgctggaat taccggcggg gctgggaagc gtacagctta ctgcgggagg
    56641 cgatattcgc cctccgcgtg cagacgaagc ggtcagcgtg cgtttcaaat cggcaggatt
    56701 gctgcatatt gtcgggcgca acggcggacg taagctgaag aaaatctggc aagagttagg
    56761 cgtgccgccg tggctacgtg acaccacgcc actgctgttt tatggcgaaa cgctgattgc
    56821 ggcggcaggg gtatttgtga cgcaagaagg tgtggctgaa ggtgagaatg gcgtaagttt
    56881 tgtctggcag aaaacgctta gttaagtgaa agccggataa gacgcatcaa acgtcgcatc
    56941 cggcgaaagt caatcaggac tcgctcacca ccaccgtacc gatttccggg tggctaaagc
    57001 tggtaatttt atccagacgt agctcacggg tttcgccagc ggcctcgacg accagatact
    57061 ccacattttt gcgggagact aaatcgctgg cttttgcctg caatttttcg ccatctttca
    57121 gctcaagtgt cagcattaaa tgatgctggc aggcgagctc aagattatcg taatcatcac
    57181 aattgattgg ttgatacgta tcattcattg acataatcgc tcaccagtaa gtttgccgca
    57241 gcgtatgctg ctttttccct gacagcctca gaaagggcgt cgtcggcagc catttcattc
    57301 agcactttca aaacgcagcc cagcgcgtcc ggaacgtatc ctaagtctcc gctggcgatt
    57361 tccgcgtacc gcttgcgtat taactcacaa tatttttcca catgccctcc tgtcagcaca
    57421 ctgacttaac cgtggatgca agtctaagcc tacgaagata aactctgttt cgcaaggtga
    57481 ctataccaca ctcatttctg caatatcagc gccgcaactg cacgtattcc gttacaatgg
    57541 cctcctgatt cgaaaggagt tttcttatag cgcttaaagc gacaatttat aaagcgacgg
    57601 ttaatgtggc cgatctcgac cgcaaccagt ttctcgatgc ctctctgacg ctggcgcgcc
    57661 acccttcaga aacccaggag cgtatgatgc tgcgcctgct ggcgtggctg aaatatgctg
    57721 atgaacgtct gcaatttacc cgtggtttgt gtgccgatga tgagccggaa gcgtggctgc
    57781 gtaacgatca cctgggcatt gatttgtgga ttgagctggc gctgccggat gagcggcgga
    57841 ttaagaaagc ctgcacccag gccgcagaag tggcgctgtt tacctataat agtcgggcgg
    57901 cgcaaatctg gtggcagcaa aatcagagca aatgtgtgca gtttgccaat ctttccgtct
    57961 ggtatctgga cgatgaacaa ctggcgaaag taagcgcctt tgccgatcgt accatgacgc
    58021 tgcaggcaac gattcaggat ggcgtgatct ggttatcgga cgataagaat aatctggaag
    58081 ttaacttaac cgcctggcaa caaccttcat gattgtgatt tcccgacatg ttgctattcc
    58141 cgatggtgag cttgagatca ccgccattcg tgcgcagggc gcgggcgggc agcatgttaa
    58201 taagacctca acggccattc atctgcgttt tgacattcgg gcgtccagcc tgccagagta
    58261 ttacaaagag cgtctgctcg ccgccagcca tcatttgatc agcagtgatg gcgtgattgt
    58321 cattaaggca caggaatacc gcagtcagga actgaaccgc gaagccgcgc tagcccggct
    58381 ggtggcagtg attaaagatt taacaacaga acaaaaagcc cgacgaccca cgcggcccac
    58441 ccgtgcatcg aaagagcgca ggctggcatc gaaagcacaa aaatcaagcg tgaaggcgat
    58501 gcgcggcaaa gtacgcagcg gtcgggaata aaaagaagga atagatggtg aaaaaagcga
    58561 tagtgacagc gatggctgta atcagcctct ttactctgat gggatgtaat aaccgggccg
    58621 aagtcgatac gctttctcca gcacaggctg ccgaactgaa accgatgccg caaagttggc
    58681 gcggcgtgct gccgtgtgct gattgtgaag gaatcgaaac ctctctgttc ctcgaaaaag
    58741 acggaacatg ggtgatgaat gagcgttatc tcggtgctcg tgaagaacct tcctccttcg
    58801 cttcctacgg tacatgggcg cgaaccgctg acaagctggt attaaccgac agcaaaggtg
    58861 aaaagtcata ttatcgggcg aaaggcgatg cgctggagat gctcgatcgt gaaggcaatc
    58921 cgattgaatc gcagttcaac tatacgctgg aaccggcaca atccagttta cctatgacgc
    58981 cgatgaccct gcgaggcatg tatttttata tggctgatgc ggcgaccttc actgattgcg
    59041 cgaccggaaa acgtttcatg gtagcgaata acgcagagct ggagcgtggc tacctggctg
    59101 cgcgcggtca cagtgaaaaa ccggtgttac tgtcagtaga aggtcacttt acgcttgagg
    59161 ctaatccgga tactggtgcg ccaaccaaag tattagcgcc cgatacggcg ggtaaatttt
    59221 acccgaataa ggattgcagt agtttggggc agtaaacctg cttaaggcag aaacaaacgc
    59281 aaaacaggcc agaaggatat atttcaacat tttgaatttg cacgtttttt gtaggccgga
    59341 taaggcgttt acgccgcatc cggcaatggt gctcaacgcc tgatgcgact ctggcgcgtc
    59401 ttatcatgcc tacaaccccc ctcatacctt aaggcggata aggcatttac tttatcaccg
    59461 ggtcaaacca acaaagcgac ccgccttgat ataaatccct ggcttcaggt gcccaacata
    59521 ctgtaactgc gtttctggct taaacgcaga gacatcacca atacgcatat gcatcagatc
    59581 ggcagggcta atccagcccg attgcgccag tgtaagtgga tgtccggctt tggcaaatgc
    59641 atcagtgaca aattccgaac aaaaccacga ctttttgtct ccttcgccca cactgcttaa
    59701 ctgcgctttc gccaggccgc tgacgcactg ttggcgaaaa tcctcggaga acggattcag
    59761 tgagcacatc tggcgagtca ccataaaggg aataaattcg acaatgccgc gatagttata
    59821 accgctatct ttgattttat tggcaaacgc ggtgatatct gtggcttgtt gcggggtaag
    59881 atccgggact cgtaagacga aaagcttatc actatgcttc atcgcttttt taagggaaac
    59941 aatctggacg ccagcgcctg tcgcttctgc aacgttatta tcacccagaa agattgcaac
    60001 gtgactcaca gaggaagtgc tgaagacgcg gattccaaat gaggttaccc caaggcttga
    60061 ggagaacagc aaatcgccgg gtttgagatc aggtgccgtt atttctttta ttgattgttc
    60121 ggtgaaagag ctttgatgct ggaatttgac agcccatgtt tttgcctcgg catctactgc
    60181 tgtggctgat gggtctggct ggctgatatc aacggtacaa gccgaaagta aaagaaagct
    60241 ggggagaagc aggcggcagt acgcctttgg tttatccatt ttatacaatc catgtaaaaa
    60301 agggccctga aattcaggac cctttctggc atcagccttt aatctgtttc accagatatt
    60361 cgacgatgtc accagtctta attaactgtt tctcgccgtt gcgacgatat ttatattcga
    60421 tatcgtcgtt gtcgaggtta cggtcgccca gcacaatagt gtgcggaata ccgatcagtt
    60481 ccatatcagc aaacatcacg cccggacgct ctttgcggtc atccagcagc acttcgatac
    60541 cttgtgcacg cagttcgctg tacagtttct cagcaagctc ttgtacgcgg aaggatttgt
    60601 gcatgttcat cggcagaatc gccacctgga acggcgcgat agcgtcaggc catacgatgc
    60661 cgcgttcgtc gtagttctgc tcaatcgccg cagctaccac acgcgttacc ccgataccgt
    60721 agcaacccat cgtcaggatt tggttacggc catcttcacc ctgtacggag gctttcagtg
    60781 cttcggagta cttggtaccc agctggaaga tgtgaccaac ttcgatacca cgtttgatca
    60841 gcagcgtacc ctggccatcc gggcttggat cgccagccac cacgttacgg atatctgcaa
    60901 cttccggggt agcgacatcg cgatcccagt tgataccgaa gtagtgttta ccatcgatgt
    60961 tagcaccagc agcgaaatca ctcatcgccg caacggtacg gtcaatcacc accggaatcg
    61021 gcatgtttac cggacccagt gaacccggac cggctttaac cacagcacga atttcttctt
    61081 cggtcgcgaa agtcagcggg cttgcaacct gcggcagttt ttctgcttta acttcgttca
    61141 gctcgtgatc accgcgcacc agcagcgcaa ccagcgggaa gctgctgcct tcaaccgctt
    61201 taaccagcag agtcttaacc gttttctcaa tcggcagatt gaactgttca accagttccg
    61261 cgatggtttt cgcgttcggc gtatcaacca gcgtcatttc ctgggtagca gcagcgcgcg
    61321 gttctttcgg cgcgatagct tctgccagtt caatgttcgc tgcatagtca gaggtgtcgg
    61381 agaagaccac atcgtcttca ccgctctgcg ccagcacctg gaattcgtga gaggcgctgc
    61441 cgccgataga accggtgtcg gcttgcacgg cgcggaaatc cagccccatg cggctgaaga
    61501 ttttgctgta ggccgcatac attgcatcgt aggtttcctg cagggattcc tgagaagtat
    61561 ggaaagagta agcatctttc atcaggaatt cgcgggaacg catgacgccg aaacgcggac
    61621 gcacttcgtc gcggaacttg gtctggatct gatagaagtt cagcggcagc tgtttgtaag
    61681 agctaagctc gttacgaatc aggtcagtga taacttcttc atgagttggg ccgagtacga
    61741 acggacgctc gccacggtca acaaaacgca gcagttccgg accgtactgt tcccaacgac
    61801 cactctcttg ccacaaatcg gctggctgaa ccaccggcat cgacacctcg attgcaccgg
    61861 cgttgttcat ctcttcacgc acgatgtttt cgactttttt cagaacgcgc acgccggtcg
    61921 gcagccaggt atataacccg gaggccagct tgcggatcat cccggcgcgc agcatcagct
    61981 gatggctgat cacctcggcg tcggcaggtg tctccttgag agtggagagc aggtattggc
    62041 tagtacgcat gttgttacgg ttccagttgg aaggtagaac aggctcaagg cgagcctggg
    62101 acaaaaaaag tgatttagtt taccagtgca aaagaaatgt caaaagagaa gggcgtgaat
    62161 ttaacgcggt tccagcgcaa agacttcaaa acctgcgtcg gtgacgcgcc agcgaacgtt
    62221 aaaatcatgt agccagacgg cataggtttt gcccgtttcc tcacctttat gataggccgg
    62281 gcgcgggtcc tgcgccagta cttcgcggat aaacagcgtt aactgcggat aacgcttctc
    62341 cagcgtcaaa agctggtttt cgacctctgc ggtaaaactc accgccatct ctgcagctgg
    62401 cgcactttgc gcatagctgg cactggcatc gggaagcgat tcggcaaagg ggagatacgg
    62461 tttgatatcc actaccggcg taccatcgac cagatccaga ctgccgagct tcagaatcac
    62521 gctgtcttta tggcaaacaa cctctttcag ctctaccagc gacataccaa ttgggttagg
    62581 gcggaaagta gagcgtgttg cgaaaacccc cattctggcg ttaccgccga ggcgcggtgg
    62641 acgcacagtc ggacgccagc cgccttccat cgtttgatga aagacgaaaa ggatccataa
    62701 atggctgaac gcttccaggc cgcgaacggc gtcggcctgg ttgtagggag caatgagatg
    62761 cagttcgccg ttggcgcttt ttaccagacc tggctggcgc ggaacggcga atttttcttt
    62821 atagggcgag cgaataacgc ctatttgctc gaactggaaa ctgctcattt cgccgtaatg
    62881 ttaagcgcag agccgataca tacagcctga cgatagcagc ctggcgtacc gctggtgact
    62941 tcgcagctat gcagtaatac cgcattggct ttcattttag aggcgttgat ttgcatccgc
    63001 ttacgcgcgg ttggaatgct cggcggagag tcctgattag aggcctggca agagtcgcca
    63061 ctgacttcac cgagatcgcg gaacggtttg ccgactaatt cttctgcatt ggtataaatt
    63121 cggaccggcg tggcgcgcgg cgctttcggt tttgcaggct ccgctttcgg ctggggtgca
    63181 gtgctttgaa cgggttcgac aggggatctg cttaacatgg aacagccgct tagcatgagt
    63241 gctactaaac agatcggtaa agcacgcata gtatttcctc aatgtatgat caaaacgtca
    63301 atattgaatc aggagcttgt aaaaatgaca agacgggcaa gtgcccatcc tgaatgatat
    63361 tacaaattgt ggaaacagcc taaaaattac cagcctttaa cagcgccgcc gttaaacact
    63421 ttgtttgctg cttcgtaaac ttcatcagac tgataagcct ggacgaattt cttcacgttc
    63481 tcggcgtctt tgttatcttc acgcgttacg atcaggttta cgtacgggga gtctttatct
    63541 tcgacaaaga taccgtcttt cgctggagtc aggccaatct ggctggcata ggtggtattg
    63601 ataactgcca gagcgatttg cgcgtcgtcc agagatcgag gcagctgcgg tgcttccagc
    63661 tcaacaattt tcagattttt tgggttctca acaacatcaa gtacggtcgg cagcaggcca
    63721 acgccatctt tcagtttgat caagcccact ttttgcagca gcagcagtga acgaccaagg
    63781 ttagttggat cgtttggcac ggcaacctgc gaaccatcct gcagttcatc cagtgatttg
    63841 attttcttgg agtaaccagc aatcggataa acaaaagtgt tgcctactgc gaccagtttg
    63901 tagccacgat ctttcagttg ctgatcaagg tacggtttat gctggaaggc gttggcgtcg
    63961 atatcgcctt tgctcaatgc ttcgtttggc agaacatagt cgttgaaggt taccagctca
    64021 acgtctaggc catatttgtc tttcgcaact ttctgcgcga cttctgcaac ctgctgttcg
    64081 gcaccaacaa tcacgccgac tttaatgtgg tttggatctt tttcatcctg accgcagcct
    64141 accagtgcca gtgatccaat cagggctccc actgccgcaa aggttttgaa tttgaacgcc
    64201 ataccttatt ccttcttcaa ttatttatgt tgtgttgaac gttacttgcg agtgacagcc
    64261 cggacgatgc ggtcgcctgc gaactgaatt aaataaacca gaatgaccag caataccagt
    64321 accgtattca tcaccgtcgc gttatagccg atgtagccat actgatagcc aatctgacct
    64381 aaaccaccgg caccgacagc accacccatc gcggaataac cgaccagggt aatcagggtg
    64441 atagttgccg cattcaccag acccggcaat gcttccggta acagcacttt acggacgatc
    64501 tgcatcggcg tggcacccat tgcacgggaa gcttcaatta acccggttgg gatctccagc
    64561 agagcgttct cgaccatacg ggcaataaac ggtgctgcac caacggttaa cggaacaatc
    64621 gctgcctgca aaccaatcga tgtaccaaca ataacgcggg taaacggaat cgtccatacc
    64681 agcaagataa tgaacgggat agaacggaaa atgttcacaa tcgcagaaac ggtacgatac
    64741 agcttcgcgt tagcaataat ttgccccgga cgcgtgacat aaagcagaac gccaaccggc
    64801 agaccaatca caaagccaaa aaaaccggat acgaaggtca ttgccagcgt ttcccatacg
    64861 ccacgaacca gcagccacat catcggctca gacataaccc agtacctcta cttttacatg
    64921 gtgttcctgc agccaggcaa tggcggcttg cgtatcttgt tgtgtgccgt gcatttcagt
    64981 cagcatgatg ccgaacttaa cgccaccggc gtagtccatc tgcgcgctaa taatgttgtt
    65041 gttgacgttg aaacgacgcg cggtttcaga aagcagtggg gcatcgaccg attgaccggt
    65101 aaactccaga cgcagcatcg gcacgcagtc agtaaatggc tccgcttgca gacgttcctg
    65161 gtaatcttcc gggatatcca gatgcagggt cgactgaata aacttctgcg ccagcggcgt
    65221 tttcggatgc gagaacactt cacttaccgt gtcctgctcg atcagttcgc cattgctgat
    65281 gaccgccacg caatcacaaa tacgcttcac aacgtccatt tcgtgggtga tcaacagaat
    65341 cgtcaaaccc agacggcggt taatgtcttt cagcagttcg agaatagaac gtgtcgttgc
    65401 cgggtccagc gcgctggtgg cttcatcaca cagcaatact ttgggattgc tggctaatgc
    65461 acgggcaatc gccacacgtt gtttctgccc accggaaaga ttcgacgggt agctatcatg
    65521 cttatcgcca agaccaacca atgacagcaa ttccgtcacg cgacgtttga tctcgtcttt
    65581 cggtgtgttg tccagctcca gcggcagagc cacgttgcca aaaacagtac gcgaagagag
    65641 caggttaaaa tgctggaaaa tcataccaat ctggcggcga gctttggtca actcggattc
    65701 tgacagcgtg gtcagttcct ggccatcgac cagcacgcta ccctcggttg ggcgctccag
    65761 caggtttaca caacgtataa gcgtactctt acccgcgcct gaggcaccga taacgccata
    65821 aatttgtcca gctggcacat gcaggctgac gttgttcaac gcctggatgg tgcgggtgcc
    65881 ctggtggaac actttggtga tattcgaaag ttttatcatt gattatttat tatcgtcatt
    65941 aagttagtcg tggcatctcg aatgcctgaa acgggcaacg ccgtcaatga aatggatgtt
    66001 aaggcatcca gacgtctaaa tcaatcaggt ttatgcgaag agcactttct tgcaggtcga
    66061 aacatgcgat actagcgtca catgccttat taaggagcta taaaaggtgg caaagagcgt
    66121 acccgcaatt tttcttgacc gtgatggcac cattaatgtc gatcacggct atgtccatga
    66181 gatcgacaac tttgaattta tcgacggtgt tattgacgcc atgcgcgagc taaaaaaaat
    66241 gggctttgtg ctggtggtag taaccaacca gtctggcatt gctcgcggta aatttaccga
    66301 agcacagttt gaaacgctga ccgagtggat ggactggtcg ctggcggacc gagatgtcga
    66361 tctggatggt atctattatt gcccgcatca tccgcagggt agtgttgaag agtttcgcca
    66421 ggtctgcgac tgccgtaaac cacatccggg gatgcttttg tcagcacgcg attatttgca
    66481 tattgatatg gccgcttctt atatggtggg cgataaatta gaagatatgc aggcagcggc
    66541 tgcggcgaac gtgggaacaa aagtgctggt gcgtacgggt aaacctatta cgtctgaagc
    66601 agaaaacgcg gcggattggg tgttaaatag cctggcagac ctgccgcaag cgataaaaaa
    66661 gcagcaaaaa ccggtataat gattaaaaga tgagcgattg aaataaaaat gcatttttcc
    66721 acttgtcttc ctgagacgac tccctataat gc
//
LOCUS       DADMHM010000004        60866 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.004, whole genome shotgun sequence.
ACCESSION   DADMHM010000004 DADMHM010000000
VERSION     DADMHM010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 60866)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 60866)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..60866
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.004"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..354)
                     /locus_tag="JN125_000213"
     CDS             complement(<1..354)
                     /locus_tag="JN125_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate starvation-inducible protein PsiE"
                     /protein_id="HAY8870119.1"
                     /translation="MTVFNKFARSFKSHWLLYLCVIVFGITNLVASSGAHMVQRLLFF
                     VLTILVVKRISSLPLRLLVAAPFVLLTAADMSISLYSWCTFGTTFNDGFAISVLQSDP
                     DEVVKMLGMYIPYLCA"
     gene            complement(813..899)
                     /locus_tag="JN125_000214"
     tRNA            complement(813..899)
                     /locus_tag="JN125_000214"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(863..865),aa:Leu,seq:gag)
     gene            complement(914..1246)
                     /gene="secG"
                     /locus_tag="JN125_000215"
     CDS             complement(914..1246)
                     /gene="secG"
                     /locus_tag="JN125_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HAY8870120.1"
                     /translation="MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFG
                     SSGSGNFMTRMTALLATLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAAPA
                     KPTSDIPN"
     gene            complement(1474..2811)
                     /gene="glmM"
                     /locus_tag="JN125_000216"
     CDS             complement(1474..2811)
                     /gene="glmM"
                     /locus_tag="JN125_000216"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003905541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HAY8870121.1"
                     /translation="MSNRKYFGTDGIRGRVGDAPITPDFVLKLGWAAGKVLARHGSRK
                     IIIGKDTRISGYMLESALEAGLAAAGLSALFTGPMPTPAVAYLTRTFRAEAGIVISAS
                     HNPFYDNGIKFFSIDGTKLPDAVEEAIEAEMEKEISCVDSAELGKASRIVDAAGRYIE
                     FCKATFPNELSLSELKIVVDCANGATYHIAPNVLRELGANVIAIGCEPNGVNINAEVG
                     ATDVRALQARVLAEKADLGIAFDGDGDRVIMVDHEGNKVDGDQIMYIIAREGLRQGQL
                     RGGAVGTLMSNMGLELALKQLGIPFARAKVGDRYVLEKMQEKGWRIGAENSGHVILLD
                     KTTTGDGIVAGLQVLAAMARNHMSLHDLCSGMKMFPQILVNVRYTAGSGDPLEHESVK
                     AVTAEVEAALGNRGRVLLRKSGTEPLIRVMVEGEDEAQVTEFAHRIADAVKAV"
     gene            complement(2804..3652)
                     /gene="folP"
                     /locus_tag="JN125_000217"
     CDS             complement(2804..3652)
                     /gene="folP"
                     /locus_tag="JN125_000217"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312083.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HAY8870122.1"
                     /translation="MKLFAQGTSLDLSHPHVMGILNVTPDSFSDGGTHNSLIDAVKHA
                     NLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWLSVDTSKPEV
                     IRESAKVGAHIINDIRSLSEPGALEAAAETGLPVCLMHMQGNPKTMQEAPKYDDVFAE
                     VNRYFIEQIARCEQAGIAKEKLLLDPGFGFGKNLSHNYSLLARLAEFHHFNLPLLVGM
                     SRKSMIGQLLNVGPSERLSGSLACAVIAAMQGAHIIRVHDVKETVEAMRVVEATLSAK
                     ENKRYE"
     gene            complement(3742..5676)
                     /gene="ftsH"
                     /locus_tag="JN125_000218"
     CDS             complement(3742..5676)
                     /gene="ftsH"
                     /locus_tag="JN125_000218"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HAY8870123.1"
                     /translation="MAKNLILWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNND
                     QVREARINGREINVTKKDSNRYTTYIPVQDPKLLDNLLTKNVKVVGEPPEEPSLLASI
                     FISWFPMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTEDQIKTTFADVAGCDEA
                     KEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG
                     SDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN
                     QMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVH
                     MRRVPLAPDIDAAIIARGTPSFSGADLANLVNEAALFAARGNKRVVSMIEFEKAKDKI
                     MMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLP
                     EGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWG
                     FSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLTD
                     NMDILHAMKDALMKYETIDAPQIDDLMARRDVRPPAGWEEPGASNNSGDNGSPKAPRP
                     VDEPRTPNPGNTMSEQLGDK"
     gene            complement(5776..6405)
                     /gene="rlmE"
                     /locus_tag="JN125_000219"
     CDS             complement(5776..6405)
                     /gene="rlmE"
                     /locus_tag="JN125_000219"
                     /EC_number="2.1.1.166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uridine(2552)-2'-O)-methyltransferase
                     RlmE"
                     /protein_id="HAY8870124.1"
                     /translation="MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQ
                     SDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD
                     ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGS
                     FVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKP"
     gene            6531..6824
                     /gene="yhbY"
                     /locus_tag="JN125_000220"
     CDS             6531..6824
                     /gene="yhbY"
                     /locus_tag="JN125_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014833438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HAY8870125.1"
                     /translation="MNLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHH
                     ELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGKTLVLYRPTKERKISLPR"
     gene            complement(6981..7457)
                     /gene="greA"
                     /locus_tag="JN125_000221"
     CDS             complement(6981..7457)
                     /gene="greA"
                     /locus_tag="JN125_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006178768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HAY8870126.1"
                     /translation="MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKE
                     NAEYHAAREQQGFCEGRIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEE
                     QTYRIVGDDEADFKQNLISVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL"
     gene            7705..9138
                     /gene="dacB"
                     /locus_tag="JN125_000222"
     CDS             7705..9138
                     /gene="dacB"
                     /locus_tag="JN125_000222"
                     /EC_number="3.4.16.4"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001212660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase"
                     /protein_id="HAY8870127.1"
                     /translation="MRFSRFIIGLTSCIAFSVQAANVDEYVTQLPAGANLALMVQKVG
                     ASAPAIDYHSQQMALPASTQKVITALAALIQLGPDFRFTTTLETKGNVENGVLKGDLV
                     ARFGADPTLKRQDIRNMVATLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCF
                     SAPPAAAIVDRNCFSVSLYSAPKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCE
                     LDVVPGDLNRFTLTGCLPQRSEPLPLAFAVQDGASYAGAILKDELKQAGITWSGTLLR
                     QTQVNEPGTVVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSD
                     AVRQILRQQAGVDIGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDNELNFISMLPL
                     AGYDGSLQYRAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQRMAFVQYLSGYAV
                     EPADQRNRRIPLVRFESRLYKDIYQNN"
     gene            complement(9178..10350)
                     /gene="cgtA"
                     /locus_tag="JN125_000223"
     CDS             complement(9178..10350)
                     /gene="cgtA"
                     /locus_tag="JN125_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Obg family GTPase CgtA"
                     /protein_id="HAY8870128.1"
                     /translation="MKFVDEASILVVAGDGGNGCVSFRREKYIPKGGPDGGDGGDGGD
                     VWMEADENLNTLIDYRFEKSFRAERGQNGASRDCTGKRGKDVTIKVPVGTRVIDQGTG
                     ETMGDMTKHGQRLLVAKGGWHGLGNTRFKSSVNRTPRQKTNGTPGDKRELLLELMLLA
                     DVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDNEKSFVVADIPGLI
                     EGAAEGAGLGIRFLKHLERCRVLLHLIDIDPIDGTDPVENARIIISELEKYSQDLAAK
                     PRWLVFNKIDLLDKAEAEEKAKAIAEALGWEDKYYLISAASGLGVKDLCWDVMTFIIE
                     NPVVQAEEAKQPEKVEFMWDDYHRQQLEEIAEEDDEDWDDDWDEDDEEGVEFIYKR"
     gene            complement(10366..11331)
                     /locus_tag="JN125_000224"
     CDS             complement(10366..11331)
                     /locus_tag="JN125_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012135318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HAY8870129.1"
                     /translation="MKQQAGIGILLALTTAICWGALPIAMKQVLEVMEPPTIVFYRFL
                     MASIGLGAILAVKKRLPPLRVFRKLRWLILLAVATAGLFGNFILFSSSLQYLSPTASQ
                     VIGQLSPVGMMVASVFILKEKMRSTQVVGALMLLSGLVMFFNTTLVEIFTKLTDYTWG
                     VIFGVGAATVWVSYGVAQKVLLRRLASPQILFLLYTLCTIALFPLAKPGVIAQLSHWQ
                     LACLIFCGLNTLVGYGALAEAMARWQAAQVSAIITLTPLFTLFFSDLLSLAWPDFFAR
                     PMLNLLGYLGAFVVVAGAMYSTIGHRIWGGLRKHTTVVSQPRAGE"
     gene            complement(11458..11715)
                     /gene="rpmA"
                     /locus_tag="JN125_000225"
     CDS             complement(11458..11715)
                     /gene="rpmA"
                     /locus_tag="JN125_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007369914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HAY8870130.1"
                     /translation="MAHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTK
                     FHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE"
     gene            complement(11736..12047)
                     /gene="rplU"
                     /locus_tag="JN125_000226"
     CDS             complement(11736..12047)
                     /gene="rplU"
                     /locus_tag="JN125_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015960603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HAY8870131.1"
                     /translation="MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANG
                     EEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGIS
                     A"
     gene            12306..13277
                     /gene="ispB"
                     /locus_tag="JN125_000227"
     CDS             12306..13277
                     /gene="ispB"
                     /locus_tag="JN125_000227"
                     /EC_number="2.5.1.90"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="octaprenyl diphosphate synthase"
                     /protein_id="HAY8870132.1"
                     /translation="MNLEKINELTAQDMAGVNAAILEQLNSDVQLINQLGYYIVSGGG
                     KRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDVVDESDMRRGKATANAA
                     FGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVNDPDITE
                     ENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNA
                     DGEQLGKNVGDDLNEGKPTLPLLHAMHHGTPEQAQMIRTAIEQGNGRHLLEPVLEAMN
                     ACGSLEWTRQRAEEEADKAIAALQVLPDTPWREALIGLAHIAVQRDH"
     gene            13507..13785
                     /gene="sfsB"
                     /locus_tag="JN125_000228"
     CDS             13507..13785
                     /gene="sfsB"
                     /locus_tag="JN125_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator SfsB"
                     /protein_id="HAY8870133.1"
                     /translation="MESNFIDWHPPDIIAGLRKKGTSMAAESRRNGLSSSTLANALSR
                     PWPKGEMIIAKALGTDPWVIWPSRYHDPQTHEFIDRTQLMRSYTKPKK"
     gene            complement(13833..15092)
                     /gene="murA"
                     /locus_tag="JN125_000229"
     CDS             complement(13833..15092)
                     /gene="murA"
                     /locus_tag="JN125_000229"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HAY8870134.1"
                     /translation="MDKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNV
                     PKLKDVDTSMKLLSQLGAKVERNGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVA
                     RFGQGQVSLPGGCTIGARPVDLHISGLEQLGATIKLEEGYVKASVDGRLKGAHIVMDK
                     VSVGATVTIMCAATLAEGTTIIENAAREPEIVDTANFLITLGAKISGQGTDRIVIEGV
                     ERLGGGVYRVLPDRIETGTFLVAAAISRGKIICRNAQPDTLDAVLAKLRDAGADIEVG
                     EDWISLDMHGKRPKAVNVRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMH
                     VPELSRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRI
                     YHIDRGYERIEDKLRALGANIKRVKGE"
     gene            complement(15147..15401)
                     /gene="ibaG"
                     /locus_tag="JN125_000230"
     CDS             complement(15147..15401)
                     /gene="ibaG"
                     /locus_tag="JN125_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015585657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BolA family iron metabolism protein IbaG"
                     /protein_id="HAY8870135.1"
                     /translation="MENNEIQSVLMNALSLQEVHVSGDGSHFQVIAVGELFDGMSRVK
                     KQQTVYGPLMEYIADNRIHAVSIKAYTPAEWARDRKLNGF"
     gene            complement(15561..15854)
                     /gene="mlaB"
                     /locus_tag="JN125_000231"
     CDS             complement(15561..15854)
                     /gene="mlaB"
                     /locus_tag="JN125_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312097.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance protein MlaB"
                     /protein_id="HAY8870136.1"
                     /translation="MSESLSWMQTGDTLALSGELDQDVLLPLWEMREEAVKGITCIDL
                     SRVSRVDTGGLALLLHLIDLAKKQGNNVTLQGVNDKVYTLAKLYNLPADVLPR"
     gene            complement(15854..16489)
                     /gene="mlaC"
                     /locus_tag="JN125_000232"
     CDS             complement(15854..16489)
                     /gene="mlaC"
                     /locus_tag="JN125_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HAY8870137.1"
                     /translation="MFKRLMMVALLVIAPLSAATAADQTNPYKLMDEAAQKTFDRLKN
                     EQPQIRANPDYLRTIVDQELLPYVQVKYAGALVLGQYYKSATPAQREAYFAAFREYLK
                     QAYGQALAMYHGQTYQIAPEQPLGDKTIVPIRVTIIDPNGRPPVRLDFQWRKNSQTGN
                     WQAYDMIAEGVSMITTKQNEWGTLLRTKGIDGLTAQLKSISQQKITLEEKK"
     gene            complement(16508..17059)
                     /gene="mlaD"
                     /locus_tag="JN125_000233"
     CDS             complement(16508..17059)
                     /gene="mlaD"
                     /locus_tag="JN125_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipid asymmetry maintenance
                     protein MlaD"
                     /protein_id="HAY8870138.1"
                     /translation="MQTKKNEIWVGIFLLAALLAALFVCLKAANVTSIRTEPTYTLYA
                     TFDNIGGLKARSPVSIGGVVVGRVADITLDPKTYLPRVTLEIEQRYNHIPDTSSLSIR
                     TSGLLGEQYLALNVGFEDPELGTAILKDGDTIQDTKSAMVLEDLIGQFLYGSKGDDNK
                     NSGDAPAAAPGNNETTEPVGTTK"
     gene            complement(17064..17846)
                     /gene="mlaE"
                     /locus_tag="JN125_000234"
     CDS             complement(17064..17846)
                     /gene="mlaE"
                     /locus_tag="JN125_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014071945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid asymmetry maintenance ABC transporter
                     permease subunit MlaE"
                     /protein_id="HAY8870139.1"
                     /translation="MLLNALASLGHKGIKTLRTFGRAGLMLFNALVGKPEFRKHAPLL
                     VRQLYNVGVLSMLIIVVSGVFIGMVLGLQGYLVLTTYSAETSLGMLVALSLLRELGPV
                     VAALLFAGRAGSALTAEIGLMRATEQLSSMEMMAVDPLRRVISPRFWAGVISLPLLTV
                     IFVAVGIWGGSLVGVSWKGIDSGFFWSAMQNAVDWRMDLVNCLIKSVVFAITVTWISL
                     FNGYDAIPTSAGISRATTRTVVHSSLAVLGLDFVLTALMFGN"
     gene            complement(17854..18663)
                     /gene="mlaF"
                     /locus_tag="JN125_000235"
     CDS             complement(17854..18663)
                     /gene="mlaF"
                     /locus_tag="JN125_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid ABC transporter ATP-binding protein
                     MlaF"
                     /protein_id="HAY8870140.1"
                     /translation="MEQSVANLVDMRDVSFTRGNRCIFDNISLTVPRGKITAIMGPSG
                     IGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNV
                     FDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA
                     LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAWIL
                     ADKKIVAHGSAQALQANPDPRVRQFLDGIADGPVPFRYPAGDYHADLLPGS"
     gene            18873..19850
                     /locus_tag="JN125_000236"
     CDS             18873..19850
                     /locus_tag="JN125_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium/sodium antiporter"
                     /protein_id="HAY8870141.1"
                     /translation="MLLATALLIVGLLLVVYSADRLVFAASILCRTFGIPPLIIGMTV
                     VSIGTSLPEIIVSLAASLHEQRDLAVGTALGSNIINILLILGLAALVRPFTVHSDVLR
                     RELPLMLLVSVVAGSVLYDGQLSRSDGIFLLFLAVLWLLFIVKLARQAERQGTDSLTR
                     EQLAELPRDGGLPVAFLWLGIALIIMPVATRMVVDNATVLANYFAISELTMGLTAIAI
                     GTSLPELATAIAGGRKGENDIAVGNIIGANIFNIVIVLGLPALITPGEIDPLAYSRDY
                     SVMLLVSIIFALLCWRRSPQRGRGVGVLLTGGFIVWLAMLYWLSPILVE"
     gene            19864..20850
                     /gene="kdsD"
                     /locus_tag="JN125_000237"
     CDS             19864..20850
                     /gene="kdsD"
                     /locus_tag="JN125_000237"
                     /EC_number="5.3.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose-5-phosphate isomerase KdsD"
                     /protein_id="HAY8870142.1"
                     /translation="MSHVELQPGFDFQQAGKEVLAIERECLAELDQYINQNFTLACEK
                     MFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIA
                     ISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAP
                     TSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPH
                     VKKTASLRDALLEVTRKNLGMTVICDDNMMIEGIFTDGDLRRVFDMGVDVRQLSIADV
                     MTPGGIRVRPGILAVEALNLMQSRHITSVMVADGDHLLGVLHMHDLLRAGVV"
     gene            20871..21437
                     /gene="kdsC"
                     /locus_tag="JN125_000238"
     CDS             20871..21437
                     /gene="kdsC"
                     /locus_tag="JN125_000238"
                     /EC_number="3.1.3.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate-8-phosphatase KdsC"
                     /protein_id="HAY8870143.1"
                     /translation="MSKAGASLATCYGPVSADVIAKAENIRLLILDVDGVLSDGLIYM
                     GNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNK
                     LIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIA
                     GGCGAVREVCDLLLLAQGKLDEAKGQSI"
     gene            21434..22009
                     /gene="lptC"
                     /locus_tag="JN125_000239"
     CDS             21434..22009
                     /gene="lptC"
                     /locus_tag="JN125_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter periplasmic protein
                     LptC"
                     /protein_id="HAY8870144.1"
                     /translation="MSKARRWVIIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKS
                     EHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAK
                     LTNDRMLYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSG
                     LKIRGNLRSKNAELIEKVRTSYEIQNKQTQP"
     gene            21978..22535
                     /gene="lptA"
                     /locus_tag="JN125_000240"
     CDS             21978..22535
                     /gene="lptA"
                     /locus_tag="JN125_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide ABC transporter
                     substrate-binding protein LptA"
                     /protein_id="HAY8870145.1"
                     /translation="MKFKTNKLSLNLVLASSLLAASIPAFAVTGDTDQPIHIESDQQS
                     LDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNG
                     KPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRV
                     TTVLVPSQLQDKNNKGQTPAQKKGN"
     gene            22542..23267
                     /gene="lptB"
                     /locus_tag="JN125_000241"
     CDS             22542..23267
                     /gene="lptB"
                     /locus_tag="JN125_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004091254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HAY8870146.1"
                     /translation="MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTT
                     TFYMVVGIVPRDAGNIIIDDDDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAV
                     LQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFIL
                     LDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAH
                     GTPTEILQDEHVKRVYLGEDFRL"
     gene            23315..24748
                     /gene="rpoN"
                     /locus_tag="JN125_000242"
     CDS             23315..24748
                     /gene="rpoN"
                     /locus_tag="JN125_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HAY8870147.1"
                     /translation="MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESN
                     PLLEQIDTHEEIDTRETQDSETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGTSG
                     DYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVPLED
                     ILESMGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARL
                     IISDHLDLLANHDFRTLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDV
                     LVRKHNGHWTVELNSDSIPRLQINQHYASMCNNARNDGDSQFIRSNLQDAKWLIKSLE
                     SRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHS
                     PRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQG
                     IMVARRTVAKYRESLSIPPSNQRKQLV"
     gene            24771..25058
                     /gene="hpf"
                     /locus_tag="JN125_000243"
     CDS             24771..25058
                     /gene="hpf"
                     /locus_tag="JN125_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007369896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome hibernation promoting factor"
                     /protein_id="HAY8870148.1"
                     /translation="MQLNITGNHVEITEALREFVRAKFAKLEQYFDRINQVYVVLKVE
                     KVTHTSDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH"
     gene            25176..25667
                     /gene="ptsN"
                     /locus_tag="JN125_000244"
     CDS             25176..25667
                     /gene="ptsN"
                     /locus_tag="JN125_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS IIA-like nitrogen regulatory protein PtsN"
                     /protein_id="HAY8870149.1"
                     /translation="MTNNDTTLQLSSVLNRECTRSRVHCQSKKRALEIISELAAKQLS
                     LPPQVVFEAILTREKMGSTGIGNGIAIPHGKLEEDTLRAVGVFVQLETPIAFDAIDNQ
                     PVDLLFALLVPADQTKTHLHTLSLVAKRLADKTICRRLRAAQSDEELYQIITDTEGTP
                     DEA"
     gene            25713..26567
                     /gene="rapZ"
                     /locus_tag="JN125_000245"
     CDS             25713..26567
                     /gene="rapZ"
                     /locus_tag="JN125_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HAY8870150.1"
                     /translation="MVLMIVSGRSGSGKSVALRALEDMGFYCVDNLPVVLLPDLARSL
                     ADREISAAVSIDVRNMPESPEIFEQAMSNLPDAFSPQLLFLDADRNTLIRRYSDTRRL
                     HPLSSKNLSLESAIDKESDLLEPLRSRADLIVDTSEMSVHELAEMLRTRLLGKREREL
                     TMVFESFGFKHGIPIDADYVFDVRFLPNPHWDPKLRPMTGLDKPVAAFLDRHTEVHNF
                     IYQTRSYLELWLPMLETNNRSYLTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRH
                     RTLEKRKP"
     gene            26564..26836
                     /gene="npr"
                     /locus_tag="JN125_000246"
     CDS             26564..26836
                     /gene="npr"
                     /locus_tag="JN125_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000216792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS phosphocarrier protein NPr"
                     /protein_id="HAY8870151.1"
                     /translation="MTVKQTVEITNKLGMHARPAMKLFELMQGFDAEVLLRNDEGTEA
                     EANSVIALLMLDSAKGRQIEVEATGPQEEEALAAVIALFNSGFDED"
     gene            27050..27754
                     /gene="yrbL"
                     /locus_tag="JN125_000247"
     CDS             27050..27754
                     /gene="yrbL"
                     /locus_tag="JN125_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoP regulatory network protein YrbL"
                     /protein_id="HAY8870152.1"
                     /translation="MIRLSEQSPLGTGRHRKCYAHPEDAQRCIKIVYHRGDGGDGGDG
                     GDGGDGGDGGDGGDGGDGGDKEIRRELKYYAHLGRRLKDWSGIPRYHGTVETDCGTGY
                     VYDVIADFDGKPSITLTEFAEQCRYEEDIAQLRQRLKQLKRYLQDNRIVTMSLKPQNI
                     LCHHISESEVIPVVCDNIGESTLIPLATWSKWCCLRKQERLWKRFIAQPALAIALQKD
                     LQPRESKTLALTSREA"
     gene            complement(27751..28479)
                     /gene="mtgA"
                     /locus_tag="JN125_000248"
                     /pseudo
     CDS             complement(27751..28479)
                     /gene="mtgA"
                     /locus_tag="JN125_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417675.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="monofunctional biosynthetic peptidoglycan
                     transglycosylase"
     gene            complement(28476..29129)
                     /gene="elbB"
                     /locus_tag="JN125_000249"
     CDS             complement(28476..29129)
                     /gene="elbB"
                     /locus_tag="JN125_000249"
                     /EC_number="4.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709007.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenoid biosynthesis glyoxalase ElbB"
                     /protein_id="HAY8870153.1"
                     /translation="MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQ
                     QVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLS
                     NFATLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTA
                     EVLEEMGAEHVPCPVDDIVVDEDNKIVTTPAYMLAQNIAEAASGIDKLVSRVLVLAE"
     gene            complement(29359..31695)
                     /gene="arcB"
                     /locus_tag="JN125_000250"
     CDS             complement(29359..31695)
                     /gene="arcB"
                     /locus_tag="JN125_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerobic respiration two-component sensor
                     histidine kinase ArcB"
                     /protein_id="HAY8870154.1"
                     /translation="MKQIRLLAQYYVDLMMKLGLVRFSMLLALALVVLAIVVQMAVTM
                     VLHGQVESIDVIRSIFFGLLITPWAVYFLSVVVEQLEESRQRLSRLVQKLEEMRERDL
                     SLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKEREETQIQLEQQSSFLRSF
                     LDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLKPADVYSPEAAAKVIETDEK
                     VFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLMGFGRDITERKRYQDAL
                     ERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNI
                     FNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQV
                     ITDGTRLRQILWNLISNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKI
                     FAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPSV
                     AEEVDDAFDEDDMPLPALNVLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFK
                     PGEYDLVLLDIQLPDMTGLDISRELTKRYPREDLPPLVALTANVLKDKQEYLNAGMDD
                     VLSKPLSVPALTAMIKKFWDTQDDEESTVTTEENSKSEALLDIPMLEQYLELVGPKLI
                     TDGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEGHKIKGAAGSVGLRHLQQLGQQIQS
                     PDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAKATKK"
     gene            complement(31791..32720)
                     /locus_tag="JN125_000251"
     CDS             complement(31791..32720)
                     /locus_tag="JN125_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional siderophore receptor/adhesin Iha"
                     /protein_id="HAY8870155.1"
                     /translation="MQLQKLVNMFGGDLTRRYGQKVHKLTLHGGFSCPNRDGTIGRGG
                     CTFCNVASFADEAQQHRSIAEQLAHQANLVNRAKRYLAYFQAYTSTFAEVQVLRSMYQ
                     QAVSQANIVGLCVGTRPDCVPDAVLDLLCEYKDQGYEVWLELGLQTAHDKTLHRINRG
                     HDFACYQRTTQLARQRGLKVCSHLIVGLPGEGQAECLQTLERVVETGVDGIKLHPLHI
                     VKGSIMAKAWEAGRLNGIEQEDYTLTAGEMIRHTPPEVIYHRISASARRPTLLAPLWC
                     ENRWTGMVELDRYLNEHGVQGSALGRPWLPPTE"
     gene            33395..37855
                     /gene="gltB"
                     /locus_tag="JN125_000252"
     CDS             33395..37855
                     /gene="gltB"
                     /locus_tag="JN125_000252"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HAY8870156.1"
                     /translation="MLYDKSLERDNCGFGLIAHIEGEPSHKVVRTAIHALARMQHRGA
                     ILADGKTGDGCGLLLQKPDRFFRIVAQERGWRLAKNYAVGMLFLNKDPELAAAARRIV
                     EEELQRETLSIVGWRDVPTNEGVLGEIALSSLPRIEQIFVNAPAGWRPRDMERRLFIA
                     RRRIEKRLEADKDFYVCSLSNLVNIYKGLCMPADLPRFYLDLADLRLESAICLFHQRF
                     STNTVPRWPLAQPFRYLAHNGEINTITGNRQWARARTYKFQTPLIPDLHDAAPFVNET
                     GSDSSSMDNMLELLLAGGMDIIRAMRLLVPPAWQNNPDMDPELRAFFDFNSMHMEPWD
                     GPAGIVMSDGRFAACNLDRNGLRPARYVITKDKLITCASEVGIWDYQPDEVVEKGRVG
                     PGELMVIDTRSGRILHSAETDDDLKSRHPYKEWMEKNVRRLVPFEDLPDEEVGSRELD
                     DDTLASYQKQFNYSAEELDSVIRVLGENGQEAVGSMGDDTPFAVLSSQPRIIYDYFRQ
                     QFAQVTNPPIDPLREAHVMSLATSIGREMNVFCEAEGQAHRLSFKSPILLYSDFKQLT
                     TMKEEHYRADTLDITFDVTKTTLEATVKELCDKAEKMVRSGTVLLVLSDRNIAKDRLP
                     VPAPMAVGAIQTRLVDQSLRCDANIIVETASARDPHHFAVLLGFGATAIYPYLAYETL
                     GRLVDTHAIAKDYRTVMLNYRNGINKGLYKIMSKMGISTIASYRCSKLFEAVGLHDDV
                     VGLCFQGTVSRIGGASFEDFQQDLLNLSKRAWLARKPISQGGLLKYVHGGEYHAYNPD
                     VVRTLQQAVQSGEYSDYQEYAKLVNERPATTLRDLLAITPGENAVNIADVEPASELFK
                     RFDTAAMSIGALSPEAHEALAEAMNSIGGNSNSGEGGEDPARYGTNKVSRIKQVASGR
                     FGVTPAYLVNADVIQIKVAQGAKPGEGGQLPGDKVTPYIAKLRYSVPGVTLISPPPHH
                     DIYSIEDLAQLIFDLKQVNPKAMISVKLVSEPGVGTIATGVAKAYADLITIAGYDGGT
                     GASPLSSVKYAGCPWELGLVETQQALVANGLRHKIRLQVDGGLKTGVDIIKAAILGAE
                     SFGFGTGPMVALGCKYLRICHLNNCATGVATQDDKLRKNHYHGLPFKVTNYFEFIARE
                     TRELMAQLGVTRLVDLIGRTDLLKELDGFTAKQQKLALSKLLETAEPHLGKALYCTEN
                     NPPFDNGLLNAQLLQQAKPFVDGRQSKTFWFDIRNTDRSVGASLSGYIAQTHGDQGLA
                     ADPIKAYFNGTAGQSFGVWNAGGVELYLTGDANDYVGKGMAGGLIAIRPPVGSAFRSH
                     EASIIGNTCLYGATGGRLYAAGRAGERFGVRNSGAITVVEGIGDNGCEYMTGGIVCIL
                     GKTGVNFGAGMTGGFAYVLDESGDFRKRVNPELVEVLNVDDLAIHEEHLRGLITEHVQ
                     HTGSQRGEEILANWSTFATKFALVKPKSSDVKALLGHRSRSAAELRVQAQ"
     gene            37868..39286
                     /locus_tag="JN125_000253"
     CDS             37868..39286
                     /locus_tag="JN125_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001540975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase"
                     /protein_id="HAY8870157.1"
                     /translation="MSQNVYQFIDLQRVDPPKKPLKIRKIEFVEIYEPFSEGQAKAQA
                     DRCLSCGNPYCEWKCPVHNYIPNWLKLANEGRIFEAAELSHQTNTLPEVCGRVCPQDR
                     LCEGSCTLNDEFGAVTIGNIERYINDKAFEMGWRPDMSGVKQTGKKVAIIGAGPAGLA
                     CADVLTRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTE
                     VGRDVQLDDLLSDYDAVFLGVGTYQSMRGGLENEDADGVYAALPFLIANTKQLMGFGE
                     TRDEPFVSMEGKRVVVLGGGDTAMDCVRTSVRQGAKHVTCAYRRDEENMPGSRREVKN
                     AREEGVEFKFNVQPLGIEVNGNGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPA
                     DAVIMAFGFRPHNMEWLAKHSVELDSQGRIIAPEGSDNAFQTSNPKIFAGGDIVRGSD
                     LVVTAIAEGRKAADGIMNWLEV"
     gene            39470..39949
                     /locus_tag="JN125_000254"
     CDS             39470..39949
                     /locus_tag="JN125_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001613919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1016 family protein"
                     /protein_id="HAY8870158.1"
                     /translation="MESLSERTSTGYQQIHDGIIHLVDSARTETVRSVNALMTATYWE
                     IGRRIVEFEQGGEARAAYGAQLIKRLSKDLSLRYKRGFSAKNLRQMRLFYLFFQHVEI
                     RQTVSGELTPLGIPQTPSAEFPSAKIWQTLSAKLRGCLIFPQLLYCISYFRFVYSCK"
     gene            39966..40271
                     /locus_tag="JN125_000255"
     CDS             39966..40271
                     /locus_tag="JN125_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY8870159.1"
                     /translation="MIYIEQLELIHKSGDVLYPVKITRKSSGKTAFHLVPFGLNKTHD
                     LLEVEDASEAIRLVIDERHSIRCSTLTATITNKKGKRIKRTGIYSIKGVNIKEYNVR"
     gene            complement(40347..40811)
                     /locus_tag="JN125_000256"
     CDS             complement(40347..40811)
                     /locus_tag="JN125_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF386 domain-containing protein"
                     /protein_id="HAY8870160.1"
                     /translation="MMMGEVQSLPSAGLHPALQDALTLALAARPQEKAPGRYELQGDN
                     IFMNVMTFNTQSPVEKKAELHEQYIDIQLLLNGEERILFGMAGTARQCEEFHHEDDYQ
                     LCSTIDNEQAIILKPGMFAVFMPSEPHKPGCVVGEPGEIKKVVVKVKADLMA"
     gene            complement(40808..41683)
                     /locus_tag="JN125_000257"
     CDS             complement(40808..41683)
                     /locus_tag="JN125_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312122.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine kinase"
                     /protein_id="HAY8870161.1"
                     /translation="MTTLAIDIGGTKLAAALIGADGQIRDRRELPTPASQTPQALRDA
                     LAALVAPLQAHAQQVAIASTGIIRDGSLLALNPHNLGGLLHFPLVKTLEQLSNLPTIA
                     INDAQAAAWAEYQALEGDITDMVFITVSTGVGGGVVSGGKLLTGPSGLAGHIGHTLAD
                     PHGPVCGCGRTGCVEAIASGRGIAAAAQGELMGADARTIFTRAGQGDEQAQQLIHRSA
                     HVLARLIADIKATTDCQCVVVGGSVGLAEGYLALVKTYLAQEPAAFHVDLLAAHYRHD
                     AGLLGAALLAQGEKL"
     gene            complement(41680..42369)
                     /locus_tag="JN125_000258"
     CDS             complement(41680..42369)
                     /locus_tag="JN125_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
                     /protein_id="HAY8870162.1"
                     /translation="MSLLAQLDQKIAANGGLIVSCQPVPDSPLDKPEIVAAMALAAEQ
                     AGAVAIRIEGVANLQATRAVVSVPIIGIVKRDLEDSPVRITAYIEDVDALAQAGADII
                     AIDGTDRPRPVPVETLLARIHHHGLLAMTDCSTPEDGLACQKLGAEIIGTTLSGYTTP
                     ETPEEPDLALVKTLSDAGCRVIAEGRYNTPAQAADAMRHGAWAVTVGSAITRLEHICQ
                     WYNTAMKKAVL"
     gene            complement(42417..43907)
                     /gene="nanT"
                     /locus_tag="JN125_000259"
     CDS             complement(42417..43907)
                     /gene="nanT"
                     /locus_tag="JN125_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312124.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialic acid transporter NanT"
                     /protein_id="HAY8870163.1"
                     /translation="MSTTTQNIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLT
                     EVQGEFGLTTVQAASLISAAFISRWFGGLMLGAMGDRYGRRLAMVTSIVLFSAGTLAC
                     GFAPGYITMFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSVGAVVA
                     AQVYSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDWKEKHAGKAPVRTMVDILY
                     RGEHRIANIVMTLAAATALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSTGKRWPT
                     GVMLMVVVLFAFLYSWPIQALLPTYLKTDLAYNPHTVANVLFFSGFGAAVGCCVGGFL
                     GDWLGTRKAYVCSLLASQLLIIPVFAIGGANVWVLGLLLFFQQMLGQGIAGILPKLIG
                     GYFDTDQRAAGLGFTYNVGALGGALAPIIGALIAQRLDLGTALASLSFSLTFVVILLI
                     GLDMPSRVQRWLRPEALRTHDAIDGKPFSGAVPFGSAKNDLVKTKS"
     gene            complement(44016..44909)
                     /gene="nanA"
                     /locus_tag="JN125_000260"
     CDS             complement(44016..44909)
                     /gene="nanA"
                     /locus_tag="JN125_000260"
                     /EC_number="4.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate lyase"
                     /protein_id="HAY8870164.1"
                     /translation="MATNLRGVMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYV
                     GGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDA
                     VSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPG
                     VGALKQTSGDLYQMEQIRREHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQ
                     GIVKALKEGDIQTAQKLQTECNKVIDLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGP
                     VDEKYLPELKALAQQLMQERG"
     gene            complement(45031..45822)
                     /gene="nanR"
                     /locus_tag="JN125_000261"
     CDS             complement(45031..45822)
                     /gene="nanR"
                     /locus_tag="JN125_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417693.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NanR"
                     /protein_id="HAY8870165.1"
                     /translation="MGLMNAFDSQTEDSSPAIGRNLRSRPLARKKLSEMVEEELEQMI
                     RRREFGEGEQLPSERELMAFFNVGRPSVREALAALKRKGLVQINNGERARVSRPSADT
                     IIGELSGMAKDFLSHPGGIAHFEQLRLFFESSLVRYAAEHATDEQIDLLAKALEINSQ
                     SLDNNAAFIRSDVDFHRVLAEIPGNPIFMAIHVALLDWLIAARPTVTDQALHEHNNVS
                     YQQHIAIVDAIRRHDPDEADRALQSHLNSVSATWHAFGQTTNKKK"
     gene            46202..47568
                     /gene="dcuC"
                     /locus_tag="JN125_000262"
                     /pseudo
     CDS             46202..47568
                     /gene="dcuC"
                     /locus_tag="JN125_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417694.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter DcuC"
     gene            complement(47611..48108)
                     /gene="sspB"
                     /locus_tag="JN125_000263"
     CDS             complement(47611..48108)
                     /gene="sspB"
                     /locus_tag="JN125_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClpXP protease specificity-enhancing factor"
                     /protein_id="HAY8870166.1"
                     /translation="MDLSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVTLPGVQVPME
                     YARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGT
                     MFEPEAAYDEDTSIMNDEEASADNETVMSVIDGDKPDHDDDTHPDDEPPQPPRGGRPT
                     LRVVK"
     gene            complement(48114..48752)
                     /gene="sspA"
                     /locus_tag="JN125_000264"
     CDS             complement(48114..48752)
                     /gene="sspA"
                     /locus_tag="JN125_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stringent starvation protein A"
                     /protein_id="HAY8870167.1"
                     /translation="MAVAANKRSVMTLFSGPTDIYSHQVRIVLAEKGVSFEIEHVEKD
                     NPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDERFPHPPLMPVYPVARGESRLY
                     MHRIEKDWYTLMNTIINGSASEADAARKQLREELLAIAPVFGQKPYFLSDEFSLVDCY
                     LAPLLWRLPQLGIEFSGPGAKELKGYMTRVFERDSFLASLTEAEREMRLGRS"
     gene            complement(49147..49539)
                     /gene="rpsI"
                     /locus_tag="JN125_000265"
     CDS             complement(49147..49539)
                     /gene="rpsI"
                     /locus_tag="JN125_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000829824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HAY8870168.1"
                     /translation="MAENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETA
                     RMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAG
                     FVTRDARQVERKKVGLRKARRRPQFSKR"
     gene            complement(49555..49983)
                     /gene="rplM"
                     /locus_tag="JN125_000266"
     CDS             complement(49555..49983)
                     /gene="rplM"
                     /locus_tag="JN125_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HAY8870169.1"
                     /translation="MKTFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEY
                     TPHVDTGDYIIVLNADKVAVTGNKCTDKVYYHHTGHIGGIKQATFEEMIARRPERVIE
                     IAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI"
     gene            complement(50201..51328)
                     /locus_tag="JN125_000267"
     CDS             complement(50201..51328)
                     /locus_tag="JN125_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapE"
                     /protein_id="HAY8870170.1"
                     /translation="MQSVTPTSQYLKALNEGSHQPDDVQKEAVSRLEIIYQELINSRP
                     PAPRTSGLMARVGKLWGKREDTKHTPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQR
                     LHFHRFMLRVHEELTALQGQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLM
                     KALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTL
                     TQAHLWLSPLHDETRAQMDKLWLALAGAKRENSPTLEINHRPLATMGAENQTLAVSFT
                     TLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALVDEFYERHVKLVVS
                     AEVPLYEIYQGDRLKFEFQRCLSRLQEMQSEEYLKREHLAG"
     gene            51522..51920
                     /locus_tag="JN125_000268"
     CDS             51522..51920
                     /locus_tag="JN125_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1043 family protein"
                     /protein_id="HAY8870171.1"
                     /translation="MTWEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAE
                     LDEYREELVSHFARSAELLDTMAHDYRQLYQHMAKSSSSLLPELSAEANPFRNRLAES
                     EASNDQAPVQMPRDYSEGASGLLRTGAKRD"
     gene            52074..53441
                     /gene="degQ"
                     /locus_tag="JN125_000269"
     CDS             52074..53441
                     /gene="degQ"
                     /locus_tag="JN125_000269"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine endoprotease DegQ"
                     /protein_id="HAY8870172.1"
                     /translation="MKKQTQLLSALALSVGLTLSASFQAVASIPGQVADQAPLPSLAP
                     MLEKVLPAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKG
                     YVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSD
                     KLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEGLENFIQTDASINRGNSGGAL
                     LNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIKRGLLGIKGTEM
                     SADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIAT
                     TEPGTKVKLGLLRNGKPLEVEVTLDTSTSSSASAEMITPALEGATLSDGQLKDGGKGI
                     KIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNSIAEMRKVLAAKPAIIALQIVRGNESI
                     YLLMR"
     gene            53531..54598
                     /gene="degS"
                     /locus_tag="JN125_000270"
     CDS             53531..54598
                     /gene="degS"
                     /locus_tag="JN125_000270"
                     /EC_number="3.4.21.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane-stress sensor serine
                     endopeptidase DegS"
                     /protein_id="HAY8870173.1"
                     /translation="MFVKLLRSVAIGLIVGAILLVAMPSLRSLNPLSTPQFDSTDETP
                     ASYNLAVRRAAPAVVNVYNRGVNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDAD
                     QIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGN
                     PYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTL
                     SFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQSGGI
                     DQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV
                     VMRDDKQLTLQVTIQEYPATN"
     gene            complement(54661..55599)
                     /gene="mdh"
                     /locus_tag="JN125_000271"
     CDS             complement(54661..55599)
                     /gene="mdh"
                     /locus_tag="JN125_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000861594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HAY8870174.1"
                     /translation="MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAV
                     DLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLV
                     QQVAKTCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAE
                     LKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVSFTEQEVADLTKRIQNAGTEVVEAKA
                     GGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVE
                     ERKSIGTLSAFEQNALEGMLDTLKKDIALGEEFVNK"
     gene            56034..56504
                     /gene="argR"
                     /locus_tag="JN125_000272"
     CDS             56034..56504
                     /gene="argR"
                     /locus_tag="JN125_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001257852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ArgR"
                     /protein_id="HAY8870175.1"
                     /translation="MRSSAKQEELVKAFKALLKEEKFSSQGEIVAALQEQGFDNINQS
                     KVSRMLTKFGAVRTRNAKMEMVYCLPAELGVPTTSSPLKNLVLDIDYNDAVVVIHTSP
                     GAAQLIARLLDSLGKAEGILGTIAGDDTIFTTPANGFTVKDLYEAILELFDQEL"
     gene            56869..57132
                     /gene="yhcN"
                     /locus_tag="JN125_000273"
     CDS             56869..57132
                     /gene="yhcN"
                     /locus_tag="JN125_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417705.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide/acid stress response protein YhcN"
                     /protein_id="HAY8870176.1"
                     /translation="MKIKTTVAALSVLSVLSFGAFAADSIDAAQAQNREAIGTVSVSG
                     VASSPMDMREMLNKKAEEKGATAYQITEARSGDTWHATAELYK"
     gene            complement(57187..57459)
                     /locus_tag="JN125_000274"
     CDS             complement(57187..57459)
                     /locus_tag="JN125_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870177.1"
                     /translation="MNIYTFDFDEIESQEDFYRDFSQTFGLAKDKVRDLDSLWDVLMN
                     DVLPLPLEIEFVHLGEKTRRRFGALILLFDEAEEELEGHLRFNVRH"
     gene            complement(57551..59518)
                     /gene="aaeB"
                     /locus_tag="JN125_000275"
     CDS             complement(57551..59518)
                     /gene="aaeB"
                     /locus_tag="JN125_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="p-hydroxybenzoic acid efflux pump subunit AaeB"
                     /protein_id="HAY8870178.1"
                     /translation="MGIFSIANQHIRFAVKLATAIVLALFVGFHFQLETPRWAVLTAA
                     IVAAGPAFAAGGEPYSGAIRYRGFLRIIGTFIGCIAGLVIIIAMIRAPLLMILVCCIW
                     AGFCTWISSLVRIENSYAWGLAGYTALIIVITIQPEPLLTPQFAVERCSEIVIGIVCA
                     IMADLLFSPRSIKQEVDRELESLLVAQYQLMQLCIKHGDGEVVDKAWGDLVRRTTALQ
                     GMRSNLNMESSRWARANRRLKAINTLSLTLITQSCETYLIQNTRPELITDTFREFFDT
                     PVETAQDVHKQLKRLRRVIAWTGERETPVTIYSWVAAATRYQLLKRGVISNTKINATE
                     EEILQGEPEVKVESAERHHAMVNFWRTTLSCILGTLFWLWTGWTSGSGAMVMIAVVTS
                     LAMRLPNPRMVAIDFIYGTLAALPLGLLYFLVIIPNTQQSMLLLCISLAVLGFFLGIE
                     VQQRRLGSMGALASTINIIVLDNPMTFHFSQFLDSALGQIVGCVLAFTVILLVRDKSR
                     DRTGRVLLNQFVSAAVSAMTTNVARRKENHLPALYQQLFLLMNKFPGDLPKFRLALTM
                     IIAHQRLRDAPIPVNEDLSAFHRQMRRTADHVISARSDDKRRRYFGQLLEELEIYQEK
                     LRIWQAPPQVTEPVHRLAGMLHKYQHALTDS"
     gene            complement(59524..60456)
                     /gene="aaeA"
                     /locus_tag="JN125_000276"
                     /pseudo
     CDS             complement(59524..60456)
                     /gene="aaeA"
                     /locus_tag="JN125_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417708.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="p-hydroxybenzoic acid efflux pump subunit AaeA"
     gene            complement(60464..60667)
                     /locus_tag="JN125_000277"
     CDS             complement(60464..60667)
                     /locus_tag="JN125_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000051842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AaeX family protein"
                     /protein_id="HAY8870179.1"
                     /translation="MSLFPVIVVFGLSFPPIFFELLLSLAIFWLVRRVLVPTGIYDFV
                     WHPALFNTALYCCLFYLISRLFV"
BASE COUNT        15131 a        16237 c        15088 g        14410 t
ORIGIN      
        1 ggcacataga taagggatat acatccccag cattttgaca acttcatccg gatcactctg
       61 gagcacacta atcgcaaatc catcattgaa agttgtacca aaggtacacc atgaatagag
      121 gctaatactc atgtctgccg cagtcagtaa cacaaatggt gcggcaacaa gcaggcgaag
      181 cggaagggat gatatacgtt ttacaaccag gatggtcagg acgaagaaca gcaatcgctg
      241 aaccatatgc gcgccggaag aggcgactaa gttcgtaata ccaaaaacaa taacacaaag
      301 atacaacaac caatgagatt taaaacttct agcaaatttg ttgaatactg tcatccagaa
      361 atccaagttc acaaccaata taaacaatta tcaacaatgt tcaattttat atcagacatg
      421 tttttcaact ctgatccata tcagaccgaa acactgttag ttttttcttt ttaaatgatg
      481 cggccattgc gttctcagta attaaataac attatcaatg cgtctctaaa cattacgcag
      541 aacgtagcca tcagtagtta tactgacagg agcaggatgg tttatcgaga agtaaacata
      601 tccgtattcg taccggaact ggagttgaca caataaagtg ccaattatgt cagcagaagg
      661 gaaaagttta taactaaggc gtaccggcac catcgtttca aggtaccagc tacgagtaaa
      721 gcaactggac gagatacaga tacctgacaa ccattcctca gaccaggacc aaaacgaaaa
      781 aagacgcttt tcagcgtccc ttttctggaa tttggtaccg aggacgggac ttgaacccgt
      841 aagccctatt gggcactacc acctcaaggt agcgtgtcta ccaattccac cacctcggca
      901 cggatactac tttttagttc gggatatcgc tggtcggctt agccggagca gctggttgag
      961 tttgttcggt tttcgccggt gcactcagat tttcccattc gctaccttta ttggttttgt
     1021 tgctattgat gttacccagc accagactga tgatgaagaa taacgttgcc agcagcgccg
     1081 tcatgcgggt catgaagtta ccagaaccac ttgaaccaaa cagcgtagcg gaagcgcctg
     1141 ctccgaagga ggctcccata tcagcgcctt taccttgctg cagcatgatc agaccaacaa
     1201 ggccaattgc cacaataagg aaaactacca aaagagcttc gtacataatc aacctgttcc
     1261 ttgcggagtt gccgcgtacc aatgcttcaa ccaataaagc gggagttttt aatctttccc
     1321 actgaagcgg gtgtgaatac taaccaaagc gaatgacctt cgcaagggca attttatcgc
     1381 attgtatcaa ctgcggaaaa aaacagcaaa accgatgtgt tcgctgagaa aaaaggcgac
     1441 aatcgccgcc tttttagcca gtcatttatc gttttaaacg gcttttactg catcggcgat
     1501 gcggtgtgca aattcagtca cctgcgcttc gtcttcgcct tccaccatca cgcgaattaa
     1561 cggttcggtg ccggatttac gcagcaacac gcgtccacgg ttgcccagcg cagcttcaac
     1621 ctctgcggtc acggctttaa ctgactcatg ctcaagcgga tcgccgctac ctgcggtgta
     1681 acgcacgtta accagaatct gcgggaacat tttcatgccg ctgcaaaggt cgtgcaggct
     1741 catatggtta cgtgccatcg ccgccagcac ctgcaagcca gcaacgatgc cgtcaccggt
     1801 agtggtttta tccagcagga tcacatgacc ggaattctct gcaccgatac gccagccttt
     1861 ctcctgcatt ttttccagta cgtagcggtc acccactttc gcgcgcgcaa atggaatacc
     1921 taactgtttc agcgccagct caagccccat gttactcatc aatgtaccca cagcaccacc
     1981 acgcagctgg ccctgacgaa gaccttcacg cgcgatgata tacatgatct gatcaccatc
     2041 gactttattg ccttcatggt caaccataat cacgcgatcg ccgtcgccgt cgaaggcaat
     2101 accgagatcc gctttttcag ccagcacacg agcctggagc gcgcgaacgt cggtagcccc
     2161 cacttcggca ttgatgttta caccgttcgg ctcacaaccg atagcgataa cgttcgcccc
     2221 cagttcacgc agcacgttcg gcgcgatgtg ataagtcgca ccgtttgcgc aatccaccac
     2281 aatcttcagt tcgctgaggc taagttcgtt cgggaacgtg gctttgcaaa actcgatata
     2341 gcgacccgca gcatcaacga tacggctggc tttacccagt tctgccgaat caacacagct
     2401 gatctctttt tccatttccg cttcgatggc ctcttctacc gcatccggta gtttggtgcc
     2461 gtcgatagag aaaaatttaa tgccattatc gtagaacggg ttatgcgatg cagatatcac
     2521 aattccggcc tctgcgcgga aggtacgcgt cagataagcc acggccggtg ttggcatcgg
     2581 gccagtgaag agtgcggaaa ggcccgctgc cgccagaccc gcttccagtg ctgactccag
     2641 catatagcca gaaatacgcg tgtctttacc aataatgatc ttacgggagc cgtggcgcgc
     2701 cagcacttta cccgcggccc aacccagctt aagcacaaaa tcaggtgtga tcggcgcatc
     2761 ccctacacga ccacgaatcc catcggtacc gaaatattta cgattactca tagcgtttgt
     2821 tttcctttgc agacagagtg gcttccacca cccgcatcgc ttctacggtt tctttgacgt
     2881 catgaacacg aataatgtgc gcgccttgca ttgcggcaat gaccgcacag gccagactac
     2941 cgctcaggcg ctcggacggc cccacgttca gcagctgccc aatcatcgat tttcgtgaca
     3001 tacctaccaa cagcggcagg ttgaaatggt gaaattcagc caggcgcgcc agtaatgaat
     3061 agttatggga gagattttta ccgaaaccga atccggggtc gagcaacaat ttctcttttg
     3121 cgatacccgc ctgctcgcaa cgtgctattt gctcaataaa gtagcgattc acttctgcaa
     3181 agacatcgtc atacttcgga gcttcctgca tggtttttgg atttccctgc atatgcatca
     3241 gacaaaccgg taaaccggtt tctgccgccg cctccagagc gccaggttcg gaaagggagc
     3301 ggatatcgtt aataatgtga gcgccaactt tcgctgactc acggatgact tctggtttgg
     3361 atgtatctac cgagagccag acttcgaagc gttgagcaat tgcctcaacc acaggaataa
     3421 cacgttgcaa ctcttcttca acgctaactt ccgccgcccc tgggcgcgtg gactcgccac
     3481 caacgtcaat gatcgtcgcg ccagcgttga tcatcagatt cgcatgtttc accgcatcta
     3541 tcagcgagtt atgcgtgcca ccatccgaaa aggaatcagg cgtgacgttg aggatcccca
     3601 ttacgtgagg atggctaagg tccagtgaag tgccctgggc aaagagtttc atggtgttat
     3661 ccctggtatg aattgataag aaaaaacccc ggagcacgcc ccggggtttt cggtacaaat
     3721 acagtcatct gatgcgggaa cttacttgtc gcctaactgc tctgacatgg tgttacccgg
     3781 gttcggcgta cgcggttcat caaccggacg aggagccttt ggactaccat tgtcgccaga
     3841 attgttagaa gcgcctggtt cttcccagcc cgctggcgga cgtacatcgc gacgtgccat
     3901 caggtcatca atctgcggtg cgtcgatagt ctcatatttc atgagagcat ctttcatcgc
     3961 atgcagaata tccatattgt cggtcagaag ctgacgcgca cgattatagt tacgctcaat
     4021 cagtgctttc acttcctggt cgatgatacg tgcagtttca tcggacatat gtttcgcttt
     4081 tgctacgcta cggccgagga acacttcacc ttcttcttcc gcgtacagca gtggacccaa
     4141 tttctcagag aagccccact gagtcaccat gttacgcgcc aggttggtcg caactttaat
     4201 atcgttggac gcaccggtag aaacatgttc cggcccgtag atgatctctt ctgccagacg
     4261 accaccgtac agcgtagaaa tctggctttc cagtttctga cggctggcgc tgattgcgtc
     4321 gccctcaggc aagaagaaag tcacacccag cgcacgaccg cgtgggataa tcgtcacttt
     4381 gtgcaccgga tcgtgttccg gcaccaggcg accgataatc gcatgacccg cttcgtggta
     4441 agccgtcgat tctttctgcg cttccgtcat caccatggag cgacgttccg cacccatcat
     4501 gattttatct ttcgcttttt cgaactcaat catcgacaca acgcgtttgt tgccacgagc
     4561 agcgaacagt gccgcttcgt ttaccaggtt cgccaggtca gcaccggaga aactaggagt
     4621 accacgggca atgattgccg cgtcgatatc gggtgccaat ggtacgcgac gcatgtgaac
     4681 tttcaggatc tgctcacgac cgcgaacatc tggcaagcca accacaacct gacggtcgaa
     4741 acggccagga cgcagcaggg ccgggtcaag aacgtccgga cggttagtcg cggcgataac
     4801 gatgatacct tcgttacctt cgaagccatc catctcaacc agcatctggt tcagagtctg
     4861 ttcacgttca tcgtgaccac cgcccagacc agcgccacgc tggcggccta cggcgtcgat
     4921 ttcatcgata aagatgatgc acggtgccgc tttcttcgcc tgttcgaaca tgtcacgaac
     4981 acgggatgca cccacaccga cgaacatttc tacgaagtca gaaccggaga tagtaaagaa
     5041 cggaactttc gcttcgcctg caatcgcttt cgccagcaac gttttaccgg tacccggagg
     5101 accgaccatc aggacgcctt tcgggatctt accgccgagt ttctggaagc ggctcggctc
     5161 gcgcagatac tctaccagtt cagcaacttc ttcttttgct tcgtcgcagc ccgcaacgtc
     5221 agcaaaggtc gttttgatct gatcttccgt cagcatgcgc gctttgctct taccaaacga
     5281 catggcacct ttgccaccgc cgccctgcat ttgacgcatg aagaagatcc agacaccaat
     5341 cagcaacagc atcgggaacc aagagatgaa gatagaagcc agcaggcttg gttcttcagg
     5401 cggttcaccg acaaccttga cgttcttggt caacaggtta tccagtaatt tcggatcctg
     5461 aaccggaatg taagtggtat aacggttact atctttcttg gtaacgttga tttcacgtcc
     5521 gttgatacgc gcttcacgaa cctggtcgtt attgacctct tgtaggaagg tagagtaatc
     5581 caccttacgg ccattagact cgctgggccc aaagctctgg aatactgaca tcagcacaac
     5641 ggcaatgacc agccagagta ttaggttttt cgccatgtca ctcaagggat taacctctta
     5701 ttacaactgt gttaaaaaca gcgtcaggat actctatatc cagcatcttt caaactttcg
     5761 tctgaaatct cccggttagg gtttacgccc ggtcgctaca atatacactt cccgcgaacg
     5821 tgcacgagaa gagtccggct tacgaacttt gaccttcgta aacagggagc gaatttccct
     5881 tagatactca tcgaaacctt cgccctggaa caccttcact acaaaactgc cacctggcgc
     5941 taatacatca cgacacattt ctaacgccag ttccaccaga tacatggcac gggggatatc
     6001 caccgccggt gttccgctca tgtttggtgc catatcggac atgacaacct ggactttgct
     6061 gtcgccaacg cgctccagca gtgctttcat caccagttca tcacgaaaat cgccctgaag
     6121 aaagtccaca ccaacgatag gatccatagg taaaagatcg caagcgatga tgcggccttt
     6181 gccgccaatt tgggtgacca catattgtga ccaaccaccc ggagcagcac caaggtcgac
     6241 aaccgtcatt cccggtttaa agagtttgtc actttgctgt atttcatcaa gtttaaacca
     6301 ggcacgggaa cgtaacccct ttttctgtgc ctgttgaaca tatttatcgc taaagtgttc
     6361 ctgaagccag cggctggagc tggcagaacg cttcttacct gtcatttaac tttcccatgg
     6421 ggataactca tcgtaaccaa ttgcgtaaat ttttacgcgc ctatttggtg atatatggga
     6481 gatggcggta gaatgacccg ttttcaatcc caacgtaagc aaaaaatacg atgaatctga
     6541 gtactaaaca aaaacagcac ctgaaaggtc tggcacatcc gctcaagcca gttgttctgc
     6601 ttggcagtaa tggtttgacc gaaggggtgc tggccgagat tgaacaagcg ttagagcacc
     6661 atgaactcat caaggtgaaa atcgccaccg aagatcgcga aacaaaaacc ttgatcgtgg
     6721 aagctatcgt gcgcgaaacc ggcgcctgta atgtacaggt catcggtaaa acgctggtgc
     6781 tttatcgccc aactaaagaa cgtaaaatct cgctgccacg ctaagattat cctaaagtta
     6841 cacacatttg ctgtgtaaaa cgaggggttt tccgcaggca ggagagcaaa atgccacgct
     6901 ctgttcgttg ataaaaggcc gcatagcggc ctttttcctt tctttacaat acatcaacat
     6961 cttgatgtat tgggtaattc ttacaggtat tccaccttaa ttacttcaaa ttctacttcg
     7021 ccgcccggcg ttttgatgac cacaacatca tcttcttctt tgccgatcag gccacgagca
     7081 ataggcgagt ttacagaaat caggttttgt ttaaagtcag cttcgtcatc gccaacgatg
     7141 cgataagtct gttcttcgtc agaatccaga ttcagcaccg ttacggtagc accaaaaata
     7201 acgcgcccat tgttgggcat tttggtgaca tcaatcacct gcgcgttcga cagcttggct
     7261 tcgatgtctt taatacggcc ttcgcagaaa ccctgctgtt cacgagctgc gtggtattcg
     7321 gcgttttctt tcaggtcgcc atgctcacgc gcttccgcga tagcagcaat gatttcagga
     7381 cggcgcacag atttcagaaa atccagctct tcgcgtaatt tttcagcgcc gcgtaaggtc
     7441 atcggaatag cttgcatttg ttatacctct tgaatattcc tgatggggca agtcttcacc
     7501 caccccggct gttcggcctg cccggcataa ctcctcaccg ggaccagaag caaaaaaata
     7561 ccgacccggg tacaagtccc aggtcagcta caattcacat tttgatagtc attttaccct
     7621 gaagttcccg aagggtcatc gtttacttta tagggcgttg cgccgtagta tgacggctcg
     7681 attccaggtt gttagcgcga gattatgcga ttttccagat ttatcatcgg attgaccagc
     7741 tgtatagcgt tcagtgttca ggccgcgaat gttgatgagt acgttactca actccccgct
     7801 ggtgccaacc ttgccctgat ggtgcaaaaa gtcggcgcgt cggcccccgc tattgattac
     7861 cacagtcagc agatggcgct gcccgccagt acgcagaaag tgattactgc gctggcggcg
     7921 ttgattcaac tcggccccga ttttcgtttc accacgacgc ttgaaaccaa aggcaatgtg
     7981 gaaaacggcg tacttaaggg tgacttagtg gcgcgatttg gtgccgatcc gacgttaaaa
     8041 cgtcaggata ttcgcaatat ggtcgcgact ttgaaaaaat ctggcgtcaa ccaaatcgat
     8101 ggcaatgtgt tgatagatac ctccattttc gccagccacg ataaagcccc cggctggcca
     8161 tggaatgaca tgacacaatg ctttagcgct ccgcctgccg ctgccatagt tgaccgcaac
     8221 tgtttctccg tctcgctcta cagtgcccca aaacctggtg atatggcttt tatacgcgtg
     8281 gcatcttatt accccgttac gatgttcagc caggtacgca ccctcccccg aggttctgcc
     8341 gaagcgcaat actgcgaact ggatgtcgta ccaggcgacc tgaaccgctt tacgctgacg
     8401 ggatgcctgc cacaacgttc tgagccgctc ccgttggctt ttgccgtgca ggatggagcc
     8461 agctatgccg gggcaattct gaaagatgag ttaaaacagg caggtatcac ctggagcgga
     8521 acactgctgc gccagactca ggttaacgaa cctggaacgg tagttgccag taaacagtcg
     8581 gccccgttgc acgatctgct taagattatg ctgaaaaagt cggacaacat gatcgccgat
     8641 acggttttcc gcatgatagg ccatgcgcgc ttcaatgtgc ctggaacatg gcgggccggg
     8701 tcggacgccg tgcgtcagat cctgcgccag caagccggtg tcgatattgg aaacaccatt
     8761 attgccgatg gttcagggct ttcgcggcat aacctgattg cccccgccac catgatgcag
     8821 gtgttgcaat acattgccca acacgacaat gaacttaact ttatctccat gctgccgctg
     8881 gcgggctatg atggctcttt gcagtaccgt gcaggtctgc atcaggcggg cgtggatgga
     8941 aaagtctcag cgaaaaccgg ttcgttgcag ggggtatata acctggcggg attcattacc
     9001 acagcgagcg ggcaacgaat ggcgtttgta caatatcttt ctggctatgc agtagaaccg
     9061 gcggatcagc gtaatcgccg tattccgtta gtgcgttttg aaagccgttt gtataaagat
     9121 atttatcaga acaattagtc aaaaagaaac cccggcacat ggccggggtt ttgctgatta
     9181 acgcttgtaa atgaactcaa cgccttcttc gtcgtcttcg tcccagtcat catcccagtc
     9241 ctcatcatcc tcttcagcaa tctcttcaag ctgctggcga tgataatcat cccacatgaa
     9301 ttcgactttc tctggctgtt tcgcttcttc agcctgcacg accgggtttt caatgataaa
     9361 ggtcatcaca tcccagcaga gatctttcac gcccagtcca ctcgccgcag agatcagata
     9421 atatttatct tcccagccca gcgcttcagc aatcgctttc gctttctctt cagcttctgc
     9481 cttatccagc agatcgatct tattgaacac taaccaacgc ggtttcgccg ccagatcctg
     9541 gctgtatttt tccagctcgc tgataataat acgcgcgttt tcaaccggat cggtgccgtc
     9601 aatcggatcg atatcgatga ggtgcaacag gacgcggcaa cgttccaggt gcttcaggaa
     9661 gcggataccc agacctgcgc cttccgcagc gccttcaatc agtcctggaa tatcggcaac
     9721 aacgaagctc ttttcgttgt ccattcgtac cacacccaga cttggcacca gagtggtaaa
     9781 cggataatcc gccactttcg gtttagccgc cgataccgcg cgaataaagg tcgatttacc
     9841 cgcgtttggc atccccaaca taccgacgtc agccagcagc atcagctcca gcagcagctc
     9901 acgcttatca cccggcgtac cgttggtttt ctgccgtggt gtacggttaa cggacgattt
     9961 gaaacgggta ttgcccagac cgtgccagcc gcccttagca accagcagac gctgaccgtg
    10021 tttagtcata tcgcccatgg tttcaccagt accctggtcg attacacgcg tacctaccgg
    10081 cactttaatc gtcacgtctt taccgcgctt accggtacaa tcgcggcttg cgccgttctg
    10141 accgcgctct gcacggaaag atttttcaaa acgataatcg ataagcgtgt tcaggttttc
    10201 gtcggcttcc atccatacgt caccaccatc accaccgtcg ccgccatccg ggccgccttt
    10261 cggaatatac ttttcgcggc ggaagctcac gcaaccatta ccgccatcac ctgcaacgac
    10321 cagaatcgat gcttcatcaa caaacttcat tttattctcc gtaaatcatt cgcctgcgcg
    10381 gggttgcgat accaccgttg tatgcttacg taatccgccc caaatacgat gaccaatggt
    10441 ggaatacatc gcgcccgcaa ccacgacaaa cgcaccgaga taacctaaaa ggtttaacat
    10501 cggtctggcg aagaaatcgg gccaggccag tgataaaaga tctgaaaaaa acagcgtaaa
    10561 cagtggggtg agcgtgatga tcgcgctcac ctgcgctgcc tgccagcgag ccatcgcttc
    10621 cgccagggcg ccatatccta ccaatgtatt cagtccgcaa aaaattaaac atgcgagctg
    10681 ccagtggcta agctgcgcta tcactcctgg ctttgccaga gggaagagcg caattgtaca
    10741 taaagtgtac agcaaaaaca ggatctgcgg tgaggccagc cgacgcaata aaaccttttg
    10801 cgccacgcca taactcaccc aaaccgtcgc cgcaccgacc ccaaagatga ctccccaggt
    10861 gtaatcagtg agctttgtaa atatctcgac cagagtggtg ttaaaaaaca tcaccaggcc
    10921 gctcaggagc atcaatgccc ctacaacctg agtgctgcgc attttctctt tcaggataaa
    10981 tacgctggca accatcatgc caactggcga gagttgccca atcacctgcg aagcggtcgg
    11041 actcaggtat tgcaaggatg agctgaacag gatgaagttc ccaaacagcc cggcggtcgc
    11101 cactgccaac aaaatcaacc agcgtagctt acgaaacacg cgtaatggcg gcaacctctt
    11161 cttcaccgca agaatggcac ccaggccaat actcgccatc aagaaacggt aaaacacgat
    11221 tgtcggaggt tccatcacct ccagcacctg cttcattgcg attggcaacg ccccccagca
    11281 aattgctgtg gtgagcgcca aaagaatgcc aatgcctgcc tgctgcttca taccgtattc
    11341 cctgcaaagc gcatttgcgg attaacgtcg caccatgctc atttttaccg gttatcgaat
    11401 gtaaaaagcc ccgcaacgtg ttgcggggct ttcatccgtt accgggacac gaaaaactta
    11461 ttcagcttcg atgctgataa atttacggtt tttcgggcct ttaacttcga atttcacttt
    11521 accgtctgct ttagcaaaca gagtgtggtc acgaccgcaa cctacgttag cgccagcgtg
    11581 gaatttggta ccacgttgac gaacgatgat gctacccgcc agaacggatt cgccaccgaa
    11641 acgcttaacg cccaagcgtt tagcttctga atcgcgaccg ttacgtgtgg agccgccagc
    11701 ctttttatgt gccatttgaa atctctcctc aggtcttagg cgctgatgcc agtaattttc
    11761 acatcagtga accactgacg atggccctgc tgcttacgat agtgtttacg acgacgaaac
    11821 ttaacgattt taactttctc gccacgaccg tgagcaacaa cttcagcttt gattacgccg
    11881 ccatcaacga aaggaacgcc gattttgact tcttcaccgt ttgcgatcat cagcacttca
    11941 gcgaactcaa cagtttcgcc agttgcgatg tccagctttt ccaggcgaac ggtctgacct
    12001 tcgcttactc ggtgttgttt accaccactt tggaaaaccg cgtacatata aaactccgct
    12061 tccgcgcaca ccttttcaat gattcagagt gcgctataaa tattcacaat agggcgcgaa
    12121 tattacgcaa aacgcacgcc tttgacaagt gctacagtca atacacgaag aaaaaaaaca
    12181 caacttgtac ggtaacgttt atctgtgcca ttttttcagt acaatcaccc tatattccta
    12241 accataaacc ctaagttgcc tttgttcaca gtaaggtaat cggggcgaaa agcccggctt
    12301 ttgcgatgaa tttagaaaaa atcaatgagt taaccgcgca agatatggcg ggtgttaatg
    12361 cggcaatcct tgagcagctt aattccgacg tccaactgat caatcagtta ggctattaca
    12421 tcgtcagcgg cggcggtaaa cgtattcgtc cgatgattgc tgtactggct gcacgagctg
    12481 ttggctatga gggaaatgcg catgtcacca ttgctgccct gatcgagttt atccacacgg
    12541 cgactctgct acacgacgac gttgtggatg aatcagatat gcgcaggggt aaagctaccg
    12601 ccaacgctgc atttggcaat gccgccagcg tgctggtagg cgattttatt tatacccgcg
    12661 cgttccagat gatgaccagc ctcggttcac tcaaagtgct ggaagtcatg tcagaagctg
    12721 taaacgtcat cgcagaaggt gaagttctgc aactgatgaa cgttaacgat ccggacatca
    12781 ctgaagaaaa ctacatgcgc gttatctata gtaaaaccgc gcgtctgttt gaggctgccg
    12841 cgcagtgttc cgggattctg gctggctgta cgccggagga ggagaaaggc ctgcaggatt
    12901 atgggcgcta tctcggcact gctttccagt tgatcgacga tttactcgat tacaatgccg
    12961 atggcgaaca gttaggtaaa aacgtcggcg acgatctgaa cgaaggtaaa ccgacgctgc
    13021 cgctgctgca tgcgatgcat catggcacac cagaacaggc acagatgatc cgtaccgcca
    13081 tcgaacaggg taacggtcgc catcttctgg aaccggttct ggaagcaatg aacgcttgtg
    13141 gatctcttga atggacgcgt cagcgcgccg aggaagaagc agacaaagcc atcgcagcgt
    13201 tacaggtgct cccggacacc ccttggcgag aagcactcat cggcctcgcg cacatcgctg
    13261 ttcaacgcga tcattaatcc cctcccttca tcccgcgcag tgcgcgggat gattccagta
    13321 aattccataa aaacactaat tcagcgctat aacacctgaa aaaaaaaggg cgatgaatct
    13381 ttatatattc tgaatattca cactctttac aggaactttt tagagcaata ggccatcagg
    13441 agtatagtga tgcccgacag aagaagtgtt ctgaatgaaa gcgactaact taaggagtga
    13501 ggaaagatgg aaagtaattt cattgactgg catccccctg acatcattgc aggtttgcgc
    13561 aagaaaggaa cgtcaatggc ggcggaatct cgcagaaatg gtttgagttc ctcaacgctg
    13621 gcaaacgcat tatcgcgccc atggccgaaa ggagagatga ttattgcgaa agccctggga
    13681 actgacccct gggttatctg gccatcacgc taccatgatc cgcagaccca tgagtttatc
    13741 gacagaacgc agttgatgcg tagctacact aaaccgaaaa aatgagtggt ctggcggtag
    13801 ccccgcgaac ggggctgcca gctctcagac gattactcgc ctttcacacg cttaatattt
    13861 gcacctaaag cgcgcagttt gtcttcaatg cgttcgtagc cacgatcgat gtgataaata
    13921 cgatcaacca ccgtcgtccc ttccgcaata cagccagcca gcaccaggct tgctgatgca
    13981 cgcagatcgg ttgccataac ctgtgcacca gaaagttttt caacaccatg acaaataacg
    14041 gtattgcttt cgatttcggc atgcgcgccc atacggctaa gctccggcac atgcataaag
    14101 cggttttcaa agaccgtttc ggtgatgaat ccggtccctt ctgccaccag gttcaacagc
    14161 gtgaactggg cctgcatatc ggtcgggaat gccggatgcg gcgcggtacg tacgttaaca
    14221 gccttcggac gtttgccatg catatccagg ctaatccagt cttcgccgac ttcgatgtcc
    14281 gctccagcgt cacgcagttt cgccagcacg gcgtcgagag tatctggctg cgcgttacgg
    14341 cagataattt tgccgcgaga aatcgccgcc gccaccagga aagtaccggt ttcgatacga
    14401 tccggtagca cgcgatagac accgccgcct aaacgttcca caccttcgat gacgatacga
    14461 tcggtgccct gaccgctaat tttcgcaccc agcgtaatca ggaagttcgc ggtatcgacg
    14521 atttccggtt cacgcgctgc gttttcaata atcgtggtac cttccgccag ggttgcagca
    14581 cacatgatgg tcaccgttgc gccaacgctg actttatcca tcacgatatg tgcgcctttc
    14641 agacgaccat cgacggaagc tttaacgtaa ccttcttcca gtttgatggt cgcgcctaat
    14701 tgttcgaggc cagaaatgtg tagatcaacc ggacgcgcac cgatcgtaca accgccaggc
    14761 agtgaaactt gcccctgacc aaagcgcgct accagcggcc ccagtgccca gatagaagca
    14821 cgcatggttt taaccagatc gtaaggtgcg cagaatacat taacgtcgcg ggcatcaata
    14881 tgcacagaac cattacgttc tactttcgca cccagctgac ttagcagctt cattgatgta
    14941 tcgacgtctt tcagtttcgg gacgttctgg atctctaccg gttcttccgc cagtagagcg
    15001 gcaaaaagga taggcagagc agcattttta gcgccggaaa ttgtgacttc gccctggagc
    15061 ttcgttggcc cctgaacacg aaatttatcc atttagtttg ttctcagtta acaattcata
    15121 tccgctaccg gcgaatcgcc catagctcaa aagccgttca gtttgcgatc gcgcgcccac
    15181 tccgcagggg tatacgcttt gatcgacaca gcatgaatgc ggttatccgc aatatattcc
    15241 atcagcgggc catagaccgt ctgctgtttt ttaacccgac tcatgccgtc aaacaactca
    15301 cccacggcaa taacctgaaa gtggctgcca tcgccggaaa cgtggacttc ctggagggag
    15361 agagcgttca tcaacacgct ctgaatttca ttattttcca tgggatcttc aatcatcagt
    15421 taataaacca gcgaaacatc ttagagcaaa gttgcgctgg cataaataag caaaaagcct
    15481 cgctgataaa tcagacaagg ctcgacttgc aggcaggttt gccggacagg cggttaacgc
    15541 catatccggc ctgaaaaaat ttaacgaggc agaacatcag caggcaaatt atacaatttc
    15601 gccagggtat acactttgtc gtttaccccc tgaagcgtca cattgttgcc ctgctttttc
    15661 gccagatcga taagatggag cagcagtgcc agtccccccg tatccacgcg ggacacacgg
    15721 ctaagatcga tgcaggtaat ccccttcacc gcttcctcac gcatttccca aagcggtagc
    15781 aaaacgtcct gatccagctc tccggataac gccagcgtgt cacccgtctg catccagctc
    15841 agtgactcgc tcattatttt ttctcttcca gagtgatttt ctgttgagaa atcgatttca
    15901 gttgcgcagt caggccgtcg atacctttgg tacgcagcag cgttccccac tcgttttgtt
    15961 tggtggtgat catactgacg ccttcagcaa tcatgtcgta agcctgccag ttgcccgtct
    16021 gggagttttt acgccactgg aagtccagac gcaccggcgg gcggccattc ggatcaataa
    16081 tggtaacgcg aatcggcaca atggttttat cgcccagcgg ctgttctggc gcaatctgat
    16141 aggtttgacc gtgatacatc gccagcgcct gaccgtaagc ctgcttcagg tactcacgga
    16201 aagcggcaaa gtaggcttca cgttgagcag gggtcgcact cttgtaatac tggcccagca
    16261 ccagcgcacc ggcgtatttc acctgtacgt atggcagcag ttcctgatca acaatggtac
    16321 gcagataatc cgggttggcc cgaatttgcg gttgctcatt cttcaggcga tcgaacgttt
    16381 tctgcgccgc ctcgtccatc agcttataag gattggtctg gtctgccgcg gttgccgcac
    16441 tcagcggtgc aatcaccagc aaagcgacca tcattaaacg tttaaacatg cgtcggttct
    16501 cctgaaatta tttcgttgta cccacaggtt cagtggtttc attattacct ggcgcagcag
    16561 ctggcgcatc gccactattc ttattgtcat cgcctttact accgtaaagg aactgaccaa
    16621 tgagatcttc cagcaccatc gcagacttag tgtcctgaat tgtatcgcca tccttcagga
    16681 tagcagtccc cagttccggg tcttcaaaac cgacgtttaa tgccagatat tgttccccca
    16741 gcaggccgga agtacgaatg ctcagcgaac tggtatctgg aatgtggtta taacgttgtt
    16801 caatttccag cgttacgcgt ggcagatagg ttttcgggtc cagcgtaata tccgccaccc
    16861 ggcccacaac aacgccacca atactgaccg gagagcgcgc tttcaggccg ccaatgttat
    16921 cgaacgtcgc ataaagcgtg taggtcggtt cagtacgtat ggacgtcacg ttcgccgcct
    16981 tcaggcaaac aaacagagcc gccagcagtg ctgctaataa aaagataccc acccaaattt
    17041 catttttttt cgtttgcatg aactcaattc ccaaacatca atgcggtcaa cacaaaatcc
    17101 agccccagaa cagccagaga cgagtggaca acggtgcgag tggttgcccg gctaatcccg
    17161 gcagacgtcg ggatggcgtc gtagccgtta aacaacgaaa tccacgtcac cgtgatggcg
    17221 aacaccacgc tcttaatcag acagttgacc agatccatac gccagtcgac ggcattttgc
    17281 attgccgacc agaagaaccc gctatcaatg cctttccaac tgacgccgac cagagatccg
    17341 ccccagatcc ccacggcgac gaaaataacc gtcaacagtg gtaatgaaat aaccccagcc
    17401 cagaaacggg gagaaataac ccgacgcagc ggatccaccg ccatcatctc catactggag
    17461 agttgctctg tagcgcgcat caggccgatt tctgcggtta gcgccgaacc agcacgcccg
    17521 gcaaacaaca acgcggcaac caccggcccc agttcacgca gtagcgataa cgccaccagc
    17581 atacccagac tggtttccgc actataagtg gtcagaacca gataaccttg cagccccaac
    17641 accattccga tgaacacgcc agaaaccaca ataatcagca tcgacaggac gccgacatta
    17701 tagagctggc gcaccagcag cggcgcatgt ttgcgaaatt ccggtttgcc gaccagcgca
    17761 ttgaataaca ttaacccggc ccgcccgaac gttctcaggg ttttaatccc tttatgtccg
    17821 agcgacgcca gcgcatttaa cagcatgagt ggcttaactc cctggtaaaa gatcagcgtg
    17881 ataatcgccg gcaggatagc ggaacggaac aggcccgtca gctatcccgt ccagaaactg
    17941 acgtacgcgc ggatcaggat tcgcctgcaa cgcctgggca ctgccatgag cgacaatttt
    18001 tttgtccgcc aggatccagg cgtgatccgc aatacttaac acttccggca catcgtgaga
    18061 aaccaccaca caagtcacgc ccagcgcgct gttcagctca gaaatcagct tcaccagtac
    18121 gcccatggtg atgggatctt gcccaacaaa aggttcatca aacatgatga gatccggctc
    18181 cagcgcaatc gcacgcgcca gcgctgcacg ccgcgccatc ccaccggaaa gttcagaagg
    18241 cattagttta gccgctccac gcagccccac ggcctccagc ttcatcatca ccgtactatg
    18301 caacaatggc gcgggaagtt gggtatgttc gcgcagtgga taggcgacgt tgtcaaatac
    18361 gttcatatca gtgaacaacg ccccggactg aaataacatg ctcatccgtt tgcgcactgt
    18421 atacaggcgc gaacgagaca tcgccggaat attctcacca tcgaaaagga tctcaccatg
    18481 atctggtgcg atttgcccgc caatcagacg gagtagcgtc gttttaccga tgcccgatgg
    18541 ccccatgatc gccgtgatct tccctcgcgg cacggtcagg gaaatattat cgaagatgca
    18601 gcgattgcca cgcgtaaaac tgacatcgcg catatcgact aaattcgcca cagactgctc
    18661 cataattcac ccttcgtctt gcgttgattt tctaagcatg gcgctcaatt taaccttgaa
    18721 cccaacatat ttacagaata ttacccgccg tggttagcga aagctggcat ttgttttact
    18781 ttttagccgc ataaagtcaa aattaagaat ccgttacggc tttctgaaaa tcttcagcgg
    18841 accggcgagt atacctgaag aaaggacgtt agatgctttt agctacggca ctgttaattg
    18901 ttggtttact tttggtcgtt tacagtgccg accgcctggt ttttgccgcg tctattcttt
    18961 gccgaacctt tggcatcccg ccgctgatca tcggcatgac ggtggtcagt attggtacat
    19021 cgttaccaga aatcatcgtc tcgcttgccg cgtctctgca cgaacaacgc gatttagccg
    19081 ttggtacagc cctcggctca aacattatca atattttgct gatcctcggt ctggctgcgc
    19141 tggttcgtcc ttttaccgtc cattccgatg ttctgcgtcg tgaattaccc ttaatgttgt
    19201 tggtcagcgt agtggccggt tccgtactct atgacggaca acttagtcgc agcgatggta
    19261 tctttctcct ctttctggct gtgctatggc tgctgttcat tgttaaactt gcacgtcagg
    19321 ctgaacgtca ggggactgac agcctgacca gagagcagct tgcagagctg ccgcgtgacg
    19381 gcggattgcc cgtcgcgttt ttatggctcg gcattgcgct tatcatcatg ccagtggcca
    19441 cgcggatggt ggttgataac gccacggtgc tggcgaatta ctttgccatc agcgagttga
    19501 cgatgggtct gacggcaatt gctatcggaa ccagcctgcc ggaactggca accgcaatag
    19561 cggggggtcg caaaggtgaa aacgacattg ctgtcggaaa tatcattggc gcaaacattt
    19621 ttaatattgt catcgtgttg ggtttacccg cgctgataac gccaggagag attgatccat
    19681 tggcgtacag tcgtgactac agcgtgatgt tgctggtgag cattattttt gcgttgctgt
    19741 gctggcggcg ctccccgcaa cggggccgtg gtgtaggggt attattaact ggcggattta
    19801 tcgtatggct ggcgatgttg tactggttat cgccaatact cgttgaataa ctggaaacgc
    19861 attatgtcgc acgtagagtt acaaccgggt tttgactttc agcaagcagg taaagaagtc
    19921 ctggcgattg aacgtgaatg cctggcggag cttgatcaat acatcaatca gaatttcacg
    19981 cttgcctgtg aaaagatgtt ctggtgtaaa gggaaagttg tcgtcatggg gatggggaaa
    20041 tcggggcaca tcgggcgcaa aatggccgca acgtttgcca gcaccggtac accttcattt
    20101 ttcgtccatc ctggtgaagc cgcgcatggt gatttaggca tggtcacccc acaggatgtg
    20161 gtgattgcta tctctaactc aggtgaatcc agcgaaatca cggccttaat tccagtgctt
    20221 aagcgtcttc acgtaccgtt aatctgcatc accggtcgcc cggagagcag catggcgcgc
    20281 gccgcagatg tgcatctgtg tgttaaagta gcgaaagaag cctgtccgtt agggctggca
    20341 ccgaccagca gcaccaccgc cacgctggtt atgggcgatg ccctcgctgt cgcgctgtta
    20401 aaagcacgcg gctttactgc tgaagatttt gcgctctcac acccaggcgg cgcactgggt
    20461 cgtaaacttc tgctgcgcgt aaacgatatt atgcatacgg gcgatgagat cccgcatgtt
    20521 aagaaaacgg ccagtctgcg tgacgcattg ctggaagtta cccgcaaaaa tcttggtatg
    20581 actgtcattt gcgatgacaa tatgatgatt gaaggcatct ttaccgacgg tgatttacgc
    20641 cgtgtcttcg atatgggcgt ggatgttcgt cagttaagta ttgccgatgt gatgacgccg
    20701 gggggaatac gcgtgcgccc tggcattctg gccgttgagg cactgaactt aatgcagtcc
    20761 cgccatatca cctccgtgat ggttgccgat ggcgaccatt tactcggtgt gttacatatg
    20821 catgatttac tgcgtgcagg cgtagtgtaa agattcaagg ataaacaaca atgagcaaag
    20881 caggtgcgtc gcttgcgacc tgttacggcc ctgtcagcgc cgacgttata gcaaaagcag
    20941 agaacattcg tctgctgatc ctcgacgttg atggcgtact gtcagatggc ctgatttata
    21001 tgggcaataa cggcgaagag ctgaaagcgt tcaatgttcg tgacggttat ggcattcgtt
    21061 gtgcgctcac ctctgatatt gaagtcgcta tcattaccgg gcgaaaggct aaactggtag
    21121 aagatcgttg tgccacattg gggatcactc acttgtatca ggggcagtca aacaaactga
    21181 tcgcctttag cgatctgctg gaaaaactgg cgattgcccc ggaaaatgtg gcttatgtcg
    21241 gcgatgatct catcgactgg ccggtaatgg aaaaagtggg tttaagcgtc gccgtggccg
    21301 atgctcatcc actgttgatc ccgcgcgccg attatgtgac gcgcattgct ggcggttgtg
    21361 gcgcagtgcg agaagtttgc gacttattac tcctggcgca gggcaaactg gatgaagcca
    21421 aagggcaatc gatatgagta aagccagacg ttgggttatc attgtgctat cactggcggt
    21481 tctggtgatg atcggcatta atatggccga aaaagacgat accgcccagg tggtcgtcaa
    21541 caacaatgat cccacctata aaagcgagca tacggacacg ctcgtctata acccagaagg
    21601 ggcactaagc tatcgattga ttgctcaaca cgttgaatat tattccgatc aggccgtttc
    21661 gtggtttacg cagccggtac ttaccacgtt tgataaggat aaaatcccga catggtccgt
    21721 aaaagcagat aaagccaagc tgaccaatga ccggatgctc tatttatatg gacacgttga
    21781 agtcaacgca cttgtgccgg actctcaact tcgcagaatc acgacggata acgcgcagat
    21841 caatctggtg acgcaggatg ttacctctga agacctcgtc acgttatacg gaacaacatt
    21901 taactccagc ggtctgaaaa ttcgcggcaa cttacgcagc aagaacgccg agctgattga
    21961 aaaggttaga acatcctatg aaattcaaaa caaacaaact cagccttaat cttgtgcttg
    22021 ccagctcact tctggccgcc agcattccgg catttgccgt aaccggagac actgatcagc
    22081 cgatccacat tgaatcggac cagcaatctc ttgatatgca aggcaacgtg gttaccttta
    22141 ccggtaatgt catcgtcacc cagggcacca tcaaaattaa tgccgacaaa gtggtcgtta
    22201 cccgtccggg cggcgaacaa ggtaaagaag tgattgacgg ctacggtaaa ccggcaacgt
    22261 tctaccagat gcaggacaac ggtaaacccg ttgaaggtca tgcttcccag atgcactacg
    22321 aactggcaaa agattttgtc gttctgacgg gtaatgctta tctgcagcag gtcgatagca
    22381 acattaaggg cgataagatc acttacctgg tgaaagagca gaaaatgcag gctttcagcg
    22441 acaaaggcaa gcgcgtaaca accgttctgg tgccgtcgca gctgcaggac aaaaacaaca
    22501 aaggccagac cccggcacag aagaagggta attaattcgt tatggcaaca ttaactgcaa
    22561 agaaccttgc aaaagcctat aaaggccgtc gcgtggtaga agacgtcagc ctgaccgtca
    22621 actccgggga aattgtcggt ctgctggggc caaacggtgc cggtaagacc accactttct
    22681 atatggttgt tggcattgtg ccgcgcgatg cgggcaacat cattattgat gatgacgata
    22741 tcagtctgct gcctctgcat gcacgcgcgc gccgcggtat cggctatctg ccacaggaag
    22801 cctccatttt ccgtcgcctc agcgtttacg ataacctgat ggcggtactg caaattcgtg
    22861 acgacttgtc tgctgaacaa cgtgaagacc gcgcgaacga gctgatggaa gagtttcaca
    22921 ttgagcacct gcgtgacagc atggggcagt cactctccgg gggtgaacgt cgccgtgtag
    22981 aaattgcccg cgcactggct gcgaatccga aatttattct actcgacgaa ccgtttgccg
    23041 gggttgaccc gatctcggtt atcgacatta aacgcatcat tgaacacctg cgcgacagcg
    23101 gcctgggcgt actgatcact gaccacaacg tgcgtgaaac actggcggtt tgtgaacgcg
    23161 cttatatcgt cagtcagggg catttgattg cccacggcac gcctacagaa atcttacaag
    23221 acgaacacgt taagcgtgta taccttgggg aagacttcag actctgatag ggtagaagtt
    23281 tgcgacgttt tagcaggaga gtacgattct gaacatgaag caaggtttgc aactcaggct
    23341 tagccaacaa ctggcgatga cgccacagct tcaacaggcg attcgtctgt tgcagttgtc
    23401 gacgctggaa cttcagcagg agctacagca ggcgctggag agtaatccgc tgcttgagca
    23461 aatcgacact catgaagaaa tcgacacccg cgaaacgcaa gacagtgaaa cgctggacac
    23521 cgccgacgcg ctcgaacaaa aagagatgcc ggaagagctg ccgctcgatg ccagttggga
    23581 caccatttac accgctggta caccatccgg caccagcggt gactacattg acgatgagct
    23641 gccggtctat cagggcgaaa cgacgcagac cttgcaggat tacctgatgt ggcaggtcga
    23701 gctgacaccg ttttccgaca ctgaccgcgc tattgctacc tctatcgtcg atgccgttga
    23761 tgacaccggt tatctgactg tcccgctgga agatattctc gaaagtatgg gcgatgaaga
    23821 gatcgacatc gacgaggttg aagccgtcct taagcggatc caacggtttg atccggtcgg
    23881 tgtagcggca aaagatctgc gtgactgcct gctaatccaa ctctcccaat tcgataaaac
    23941 cacgccgtgg ctggaagagg ccagactgat cattagcgat catctcgatc tgttagccaa
    24001 tcacgacttc cgcactttaa tgcgcgtcac gcgtctgaaa gaagatgtgc tgaaagaagc
    24061 cgtcaatctg atccagtcgc tcgatccgcg ccccgggcag tcgatccaga ctggcgaacc
    24121 tgagtatgtc attccagatg tgctggtgcg taagcataac ggtcactgga cggtagaact
    24181 caacagtgac agcattccgc gtctgcaaat caaccagcac tacgcctcga tgtgcaataa
    24241 cgcgcgcaac gatggtgaca gccagtttat ccgcagcaat ctgcaggatg ccaaatggtt
    24301 gatcaagagt ctggaaagcc gtaacgatac gctactgcgc gtgagtcgct gtatcgttga
    24361 acagcagcaa gccttctttg agcaaggtga agaatatatg aaaccgatgg tactggccga
    24421 tatcgcccag gctgtcgaaa tgcatgaatc gacgatatct cgcgtgacca cgcaaaaata
    24481 cctgcatagt ccacgaggca tttttgaact gaagtatttc ttttccagtc acgtcaatac
    24541 cgagggcggc ggcgaagctt cctccacggc gattcgtgcg ctggtgaaga aattaatcgc
    24601 ggcggaaaac ccagcgaaac cgttgagcga cagcaagtta acctctttgc tgtcggaaca
    24661 aggtatcatg gtggcacgcc gcactgttgc gaagtaccga gagtctttat ccattccgcc
    24721 gtcaaaccag cgtaaacagc tcgtttgacc caaccgataa ggaagacact atgcagctca
    24781 acattaccgg aaatcacgtc gagatcaccg aggcactgcg cgaatttgtt agagccaaat
    24841 ttgccaaact tgagcaatat tttgaccgaa tcaaccaggt ctatgttgtt ctgaaagtgg
    24901 agaaagtcac ccacacctca gatgcaacac tgcatgtaaa cggtggtgaa attcatgcca
    24961 gcgcggaagg tcaggacatg tacgctgcca ttgatggctt aattgataag ctggcacgcc
    25021 agttgaccaa acataaagat aaactgaaac aacactaatt gtccgggcaa ttagcatgtg
    25081 catggcggcc tgttgtgcgg cacaacgggc catttgtacg gttaatgctc cgagcctgtt
    25141 ccactgtttg agtgggcagg ttcttaggtg aaattatgac aaataatgat acaactctac
    25201 agcttagcag tgttcttaac agggaatgta cgcgaagccg cgttcactgt cagagcaaaa
    25261 aacgcgccct ggaaatcatc agcgagctgg cggcgaaaca acttagcctg ccgcctcagg
    25321 tggtttttga agctatcctg acgcgggaaa aaatgggcag taccggtatc ggcaatggta
    25381 ttgccattcc gcatggcaaa ctggaagaag atactctgcg cgccgttggc gttttcgttc
    25441 agctcgaaac gcctatagct ttcgatgcca tcgacaacca accggtggac ttactttttg
    25501 ccctgctggt gccggcagac caaactaaaa cgcacctgca tactctgtcg ctggtggcga
    25561 aacgtctggc ggacaaaacc atctgccgcc gtttacgcgc agcccagagc gatgaagagc
    25621 tgtatcaaat cattacggat accgaaggta ctccggatga agcgtagtta ttcggtaatg
    25681 tctcttttag acgttgtgag gagaaacagt acatggtact gatgatcgtc agcggacgtt
    25741 caggttcagg taaatctgtc gccctgcgtg cgctggaaga tatgggtttt tactgcgtgg
    25801 ataaccttcc cgtagtgttg ttacccgatc tggctcgaag cctggccgat cgcgagattt
    25861 ctgccgccgt cagcattgat gttcgtaata tgccggagtc accagaaata ttcgaacagg
    25921 cgatgagtaa cctgcctgac gctttctcac cgcaactcct gttcctggat gccgaccgta
    25981 ataccttaat tcgtcgttac agtgacacgc gccgactgca tccgctttcc agcaaaaacc
    26041 tgtcgctgga aagtgctatc gacaaagaaa gcgatttgct ggagcctctg cgttcgcgag
    26101 cggatctgat tgtcgatacc tcagaaatgt ccgttcacga gctggctgaa atgctgcgta
    26161 cccgtctgct gggtaaacgt gaacgcgaac tgaccatggt ctttgagtct ttcggcttca
    26221 aacacggtat ccctatcgat gcagattacg tctttgacgt gcgcttcttg ccgaacccgc
    26281 actgggatcc gaaactgcgt ccaatgacag gtcttgataa acctgtcgcc gcgttcctcg
    26341 accgccacac agaagtacac aattttatct accagacgcg aagctatctt gagctatggt
    26401 tacctatgct ggaaaccaac aaccgtagct acttgacggt cgccattggt tgtaccggcg
    26461 ggaagcaccg ttcggtgtat attgcagagc aactggcaga ctacttccgc tcgcgcggta
    26521 aaaacgtcca gtcacgccat cgtacgctgg aaaaacgtaa accatgaccg tcaagcaaac
    26581 tgttgaaatc acaaacaagc tgggcatgca tgcccggcct gcaatgaagc tgtttgaatt
    26641 aatgcagggt tttgacgctg aagtgctgtt acgtaatgac gaaggcaccg aggccgaagc
    26701 caacagcgtt attgcgctgc tgatgttgga ttctgccaaa ggacggcaga ttgaagttga
    26761 agcgaccggc ccacaggaag aggaagcact ggccgccgtt atcgccctct ttaactctgg
    26821 ttttgatgaa gattaatctt catcactttg acatacaact cccttcaaac tccccccgac
    26881 aataagaaaa tcacgtactg aaatcgttct caatcaacgt catttgtaca ttttgtgcgc
    26941 ttttcacttt cagaagaacc ttaagaaaac cttaagaggc attgtttagg ttttgtttaa
    27001 gttaatcgac catactggag atcgtcagaa aatatttcca ggagatggca tgattcgctt
    27061 atctgaacaa agtcccctgg gcaccggaag acatcggaaa tgttatgcgc atccggaaga
    27121 tgcccaacgc tgtatcaaga ttgtctacca tcgtggcgat ggtggcgatg gtggcgatgg
    27181 tggcgatggt ggcgatggtg gcgatggtgg cgatggtggc gatggtggcg atggtggcga
    27241 taaagagatc cgccgtgagt taaagtacta cgcgcatctt ggtcgccggt taaaagactg
    27301 gagtggaata ccgcgctatc acggtaccgt tgagacggat tgcggaaccg gttatgtcta
    27361 cgatgtgatt gcagattttg acggcaaacc ctccattacg ctgaccgaat ttgctgaaca
    27421 atgccgttac gaagaagaca ttgcacaact gcgccagcga ctgaaacagc tgaagcgtta
    27481 tttgcaggat aaccgtatcg tgacgatgtc gctgaagccg cagaatatcc tctgtcacca
    27541 catcagtgag tcagaggtta tcccggtcgt ctgcgacaac attggtgaaa gcacattgat
    27601 tccactggcg acctggtcga agtggtgttg tctgcgtaag caagagcggt tatggaaacg
    27661 atttatcgcc caaccggcgc tggctattgc cctgcagaaa gatctgcaac ctcgtgagag
    27721 caaaacgctg gccctcactt cgcgcgaagc ttaatccagc tggtgttgtt gcataaacgg
    27781 ctcaccgcct aactgataca tctgccgtaa aatccacgcc tgacggctac gcacgtagcc
    27841 cgatggcgag gagactttga aacgaagtgg attaggtaat acagctgcca gtaatgcagc
    27901 ttccgaccgg gtaagtttgc tcgcgggttt gtggaaataa cgttgtgccg cagcttcgac
    27961 gccaaacaca ccgtcgccaa attcggcgat attcaggtaa accgtcagga tacgcttttt
    28021 gctccagact atttctatcc ccagcgttaa tccagcttcc agcccttttc gtacccagct
    28081 acgcccatcc cataaaaaga gatttttggc cgtctgctga gaaatcgttg aagcaccgcg
    28141 aatacagttt tcattgcgct cgttgtgcgc cagggctttc tcaatggaag cgacatcaaa
    28201 gccccagtgc tcaggaaatt tctgatcttc tgcggcaatc accgccagtc ccatccacgg
    28261 cgagatttga tccatactga cccagtcaga atgtgccacg taacgaaaat tgccatgcag
    28321 ctaggcgctg acctgtcgct cgaccattac cgctgagaag ggaacaggcg caacactaaa
    28381 caacgcgatg cccccgcccc agaaaacggc gaggacaacc attaaccgca aaagaaaacg
    28441 gcgaacgaaa ctaaacaccg ttaagcggct tttactcatt cagccagaac cagcacgcgg
    28501 gaaaccagct tatcaatgcc gctcgccgct tctgcaatgt tctgcgccag catatatgct
    28561 ggggtggtga caatcttatt gtcttcatca accacgatat catcgacagg acagggcaca
    28621 tgctccgcgc ccatctcttc cagcacttct gcggtatcga tatcagtacc gatggtcaaa
    28681 cgcagcggga aatcgaaaat tttcggcagc atcgccgggg caatacacat aaaaccaagc
    28741 ggttttccgg cctgatgcat cgcttgtgcc agcgccttta attcacggtc aacggtgcat
    28801 tcgctaccaa gagtggcaaa attgcttaaa ttcttcgccg cgccaaaccc ccccggcaca
    28861 atcaacgcat ccagttcagc ggcatcggcc tgggccagag gacggatttc accgcgcgtt
    28921 attcgtgccg cttcaatcag cacgttgcgc gtttccgtca tcgcttcgcc agttaaatgg
    28981 ttgataacat caacctgctg cttatccggt gcaaagcaga ccgcctgcgc accgctgcgt
    29041 gaaatagcta acaacgtcaa caccgcttca tgaatttcag aaccgtcata gacgccgcat
    29101 ccgctcagaa ttacgccaat tttcttcatt gtgatcatcc tttcgcaatt gactgaaaca
    29161 cattaatttt tttaataaaa atggtacgca tcacacattt aactgattca tgtaacaaat
    29221 catttaagtt ttgctatctt aactgcgtgc ggcctgaaaa acagtgctgt gcccttgtaa
    29281 ctcatcataa taatttacgg cgcagccaag atttccctgg tgttggcgca gtattcgcgc
    29341 accccggtct agccggggtc attttttagt ggcttttgcc acccacgctt tcagcacttc
    29401 tacgtcgtga cgccactctt ctttcatctc ttcaatccat tcaccgacgt tatcttccca
    29461 ggcaggaagg tcaggagact gaatttgctg acccagctgt tgcagatggc gtaaccccac
    29521 tgaccccgcc gcacctttaa ttttatgtcc ttcctcaaca atgccttttt tatcctgcgc
    29581 cgtcagattc gactccagca cgctgacata gcccggcatc atcttctcaa acaccgctaa
    29641 cccgtcggtg atcagcttcg gtcctacaag ttcgagatac tgttccagca tgggaatatc
    29701 gagcaatgct tctgatttac tgttctcttc tgtcgtcacc gtactctcct catcatcctg
    29761 ggtatcccag aatttcttga tcatcgcggt tagcgccgga accgaaagcg gcttactcag
    29821 cacatcatcc attccagcat tgaggtactc ttgtttgtct ttcagcacgt tagcggttaa
    29881 ggccaccagc ggcggtaaat cctcgcgcgg ataacgcttc gtcagttcac gagagatatc
    29941 cagcccggtc atatctggca actgaatatc cagcaacacc aggtcgtatt cgcccggttt
    30001 aaacatctcc agcgccgcct tgccggtcat ggcgacatca acgctgttac ctaatttttc
    30061 cagcacagaa cgcgcaacaa tcacgttcag ttcaatgtct tccaccagca gcacattcag
    30121 cgccggtaaa ggcatatcgt cttcatcaaa cgcatcatcg acctcttctg ctaccgacgg
    30181 tgcgtggatc gtcaacgtaa aggttgaacc tttgccctgt tcgctggtaa ccgtaatatc
    30241 gccgcccata tttttcgcca gacgacgaga aacggccaga ccaataccgg tgccggtggc
    30301 aggtttaccg ccatgactgt ctttcacctg gtaatacatg gcgaaaattt tatccagctc
    30361 atcctgcgga atgccgatac cagagtcttc cacttcaaaa tgcagcatat cgccttcatc
    30421 gtagcgcacg cgcacggtaa cctggccttg ctgggtgaat ttgacggcgt tactgatgag
    30481 gttccacagg atctgccgta aacgcgtccc gtcggtaatg acctgatgcg gtaatggcag
    30541 cgtcggctcc aggttaaagc gcaatccttt ttgttgcgcc tgcaatgcgg agagattttc
    30601 cagatcggca aggaagctgg tgaaatcaac cggttgatta tcaagctgga ccttgcgccg
    30661 ttccatctta tccatgtcga taatatcgtt aaagatattc cccagcgtga cggccgaaac
    30721 atggatggtc ttgagatatt tttcctgctc ggcggtgagt tcggtatcca gcagaatgcg
    30781 gctcagaccg acgataccgt tcagcggtgt acgcaattcg tgactgatgg tggagataaa
    30841 cgtcgttttg tcgcggctgg cccgttcaag cgcatcctga taccgcttac gctcggtaat
    30901 gtcgcgacca aagcccatca aaccgtgacg tttacccacg cggtcgtagt acggcacttt
    30961 acggatttca aagcaggctt tgcgcccgtc cgggtaatcc agccactgtt cataggtcag
    31021 tgacacatta tgacggaaca ctttttcatc ggtttcaatg acttttgcgg cggcttccgg
    31081 tgagtaaaca tcagcaggtt tcaggtgaac cagttgtttt tcgctttttc cggtcagcag
    31141 ctccatcgcg cggttacagc cggaaaactc tttatcttcg ttacgataaa aaaccaggtc
    31201 gggtgaagca tcaaggaagg aacgtaagaa tgaggattgc tgctcgagct gaatttgtgt
    31261 ctcttcgcgc tctttgattt caattttcag ttggccgaag gtttcctgca gttctgcttc
    31321 cgctttttca cgaacggcaa tttcctgatt tagctgggca atattatctt ttaactgaac
    31381 gttgaggctc aaatcgcgct cgcgcatctc ctccagtttt tgcaccagcc gtgacagacg
    31441 ttgtcgtgac tcctccagtt gctcgacgac caccgataga aagtagaccg cccacggcgt
    31501 aatcagcaaa ccaaagaaga tagaacgaat aacatcaatg ctttcgacct gaccatgcag
    31561 caccatggtt accgccattt gtaccacaat ggcaagaacg acgagggcca gcgccagcaa
    31621 cattgagaag cgcaccagac ctaacttcat catcaggtca acataatact gcgccagcag
    31681 acgaatttgc ttcattaggg aattccttca cgacaacctg ccccaataat acccaattct
    31741 gacagttacg ttataaattg tgtgagaaat gcggaattcc cctcaacgac ctactccgtt
    31801 ggaggtagcc acggacgtcc cagcgccgat ccctgtacgc catgttcatt cagatagcga
    31861 tccagctcga ccattcccgt ccatcgattt tcgcaccaca gcggagcaag cagcgtcggg
    31921 cgacgggcgc tggcggaaat gcggtggtag atcacttccg gtggcgtatg gcgaatcatt
    31981 tctccggcag tgagcgtgta atcctcctgt tcaataccgt tcaaacgccc cgcttcccag
    32041 gctttcgcca taatgctgcc tttcacaata tgcagcggat gcagctttat gccgtccacg
    32101 ccggtttcaa ccactcgctc cagcgtttgc aaacattcag cctgcccttc gccaggcagg
    32161 ccgacaatta agtgggaaca caccttcagc ccgcgctgac gtgccagctg ggttgtacgc
    32221 tgataacagg caaaatcatg gccgcggttg atgcgatgca gtgttttgtc gtgggcggtt
    32281 tgtagcccca gctccagcca cacttcgtaa ccctggtcct tatattcgca aagcagatcc
    32341 agcaccgcat ccggcacgca gtccgggcgg gtaccaacac acaaaccgac aatattggcc
    32401 tggctcaccg cctgctgata catagaacgc agcacctgaa cttccgcaaa ggtgctagta
    32461 tacgcctgaa agtaggccag atagcgttta gcgcggttaa ctaaattcgc ctggtgcgcc
    32521 agttgctcgg caatggaacg atgctgctgc gcttcatcgg caaacgaggc aacattacag
    32581 aatgtgcagc caccacgccc gatggtaccg tcacggttag ggcagctaaa accgccgtgc
    32641 agcgtcagct tatgcacctt ttgcccataa cgacgggtga gatcaccacc aaacatattg
    32701 actaatttct gtaactgcat aatctgatag accgcgcctt gaaaagaggc caaagcctgc
    32761 catttttagc tcaattcggc gatgacctgg atcaatcgtc ccggcctgct tttatcaact
    32821 gcataatcaa tcaaaattac cgaagtttca tgcataatca cataaatcac ttttgcttat
    32881 cttgtgtcag atttttttat ctccttatgg attttaggca aaaacagtag catgaaacgt
    32941 cattaccaat taaggcagta taaaatgctg gttttatcgt cagttcaagg caggataagg
    33001 gttaacacgc ctttatgaca gtcaggaatt gactgtttct ctaacgactt cccttttagc
    33061 cttaaagata aaattcattt taatttcagt cacttaataa agaattttgc gctaaagcac
    33121 atttctgtac caataagctt gccatttgac ctgtatcagc tttcccgata agttggaaat
    33181 ccgctggaag ctttctggat gagcagcctg ctcatcatat ttatgcagta attgagatcc
    33241 cctcttcacc gtattaaccg atgcgaaaag gacaacaagg gggcgaatgc gaggcgcgcg
    33301 tatgacacgc aacccccgtc gccacgctct ttctgtgccc gtgcgcagcg gttcggaagt
    33361 ggggttcccg cagagcctgg gggaggttca cgatatgttg tacgataaat cccttgagag
    33421 ggataactgt ggtttcggcc tgatcgccca catagaaggc gaacctagcc acaaggtagt
    33481 gcgtactgca atacacgcac tggcccgcat gcagcaccgt ggcgcgattc tcgccgatgg
    33541 taaaaccggt gacggttgcg gcttgctgtt acaaaaaccg gatcgctttt ttcgcatcgt
    33601 tgcgcaggag cgcggctggc gtttagcaaa aaactacgct gtcgggatgc tcttcctgaa
    33661 taaagatcct gaactcgcgg ctgccgcacg ccgcatcgtt gaagaagagc tgcaacgcga
    33721 aaccttgtcg attgtgggct ggcgtgatgt ccccactaac gaaggcgtgc tgggtgaaat
    33781 cgccctctcc tctctgcccc gcattgagca aattttcgtt aacgctccgg caggctggcg
    33841 tccgcgggat atggagcgcc gtctgtttat cgcccgccgc cgcattgaaa agcgtctcga
    33901 agccgacaaa gacttctacg tctgtagcct gtcgaatctg gtgaacatct ataaaggtct
    33961 gtgtatgccg gcggatctgc cgcgctttta tctggatctt gcggacctgc gtctggaatc
    34021 ggccatctgc ctgttccacc agcgcttctc cactaacacc gtaccgcgct ggccgctggc
    34081 gcagccgttc cgctacctgg cgcataacgg tgaaatcaac accatcaccg gtaaccgcca
    34141 atgggcgcgt gcgcgtacct ataaattcca gacgccgctt atccctgatc tgcacgacgc
    34201 cgcaccgttc gtcaacgaaa ccggctctga ctccagttcg atggataaca tgctggaact
    34261 gctgctggca ggcgggatgg atatcatccg cgccatgcgt ctgttagtgc cacccgcctg
    34321 gcagaacaac ccggatatgg acccggaact gcgtgccttc tttgacttta actccatgca
    34381 tatggagccg tgggatggcc cggcgggcat cgtgatgtcc gacggtcgtt ttgccgcctg
    34441 taacctcgac cgtaacggtc tgcgtccggc gcgctacgtc atcaccaaag ataagctcat
    34501 cacctgcgcc tctgaagtcg gtatctggga ttaccagcct gacgaagtgg tcgaaaaagg
    34561 ccgcgtcggg ccaggcgaac tgatggttat cgacacccgc agtgggcgta ttctgcactc
    34621 ggcagaaacc gatgacgatc tgaaaagccg ccatccatat aaagagtgga tggagaaaaa
    34681 cgtccgccga ctggtaccgt ttgaagatct gcccgatgaa gaagtgggta gccgcgaact
    34741 ggacgacgac acgcttgcca gctaccagaa acagtttaac tacagcgcgg aagagctgga
    34801 ctccgtaatt cgcgtactgg gcgaaaacgg tcaggaagcg gtcggttcga tgggcgatga
    34861 taccccattc gccgtgctct ccagtcagcc gcgcattatt tacgactact tccgccagca
    34921 gtttgcccag gtgactaacc cgccaatcga cccgctgcgt gaagcgcatg ttatgtcgct
    34981 cgccaccagt atcggtcgtg aaatgaacgt cttttgcgaa gcagagggcc aggcgcaccg
    35041 tttaagcttt aaatcgccga ttctgctcta ctccgatttc aaacagctca cgacgatgaa
    35101 agaggagcac taccgcgcag atacgctgga tatcaccttt gacgtcacta aaaccacgct
    35161 cgaagcgaca gtcaaagagc tgtgcgacaa agccgaaaaa atggtacgta gcggcaccgt
    35221 gctgctggtg ctctccgacc ggaatatcgc taaagatcgc ctgccggttc cagccccgat
    35281 ggcggttggc gcgatccaga cccgtctggt cgatcaaagc ctgcgttgcg atgccaacat
    35341 catcgtcgaa accgccagcg cccgcgatcc gcaccacttc gccgtgttgc tgggcttcgg
    35401 cgcgacggct atttatccat accttgccta tgaaacgctg ggccgcctgg tagacaccca
    35461 tgcgattgcc aaagattatc gtaccgtgat gctcaactac cgtaacggca tcaacaaagg
    35521 cttgtacaaa atcatgtcca aaatgggcat ctccaccatc gcctcttacc gctgctcgaa
    35581 actgtttgaa gcggtcggtc tgcacgatga tgtagtgggc ctgtgcttcc aggggacggt
    35641 cagccgcatt ggtggggcga gctttgaaga cttccagcag gatctgctga acctgtcgaa
    35701 acgtgcctgg ctggcgcgta agcccatcag ccagggcggc ctgctgaaat acgtccacgg
    35761 cggcgaatac cacgcttaca acccggacgt ggtgcgcacg ctgcaacagg cggtacaaag
    35821 cggcgagtac agcgactatc aggaatacgc gaagctggtt aatgagcgtc cggcaaccac
    35881 gctgcgcgat ctgctggcaa ttacgccggg tgaaaacgcg gtcaacattg ctgatgttga
    35941 accggcaagc gaactgttta aacgctttga taccgccgcg atgtctatcg gcgcgttaag
    36001 cccggaagcc cacgaggcgc tggcggaagc gatgaatagc atcggcggta actcgaactc
    36061 cggtgaaggc ggcgaagacc cggcgcgcta tggcactaac aaagtgtcgc gcatcaagca
    36121 ggtggcttct ggtcgcttcg gcgttactcc ggcgtatctg gtcaatgccg acgtcattca
    36181 gattaaagtc gcccagggcg cgaagccggg cgaaggcggt cagttgccgg gtgacaaagt
    36241 cactccttac atcgccaaac tgcgctattc ggtgcccgga gtgacgctga tctccccgcc
    36301 gccgcaccac gatatctact ctatcgagga cttagcgcag ctcattttcg acctcaagca
    36361 ggttaacccg aaagcgatga tctccgtgaa gctggtttcc gaaccgggcg taggcaccat
    36421 cgcgactggt gtggcaaaag cttatgccga tttaatcacc atcgcaggct atgacggtgg
    36481 caccggcgca agcccgctgt cgtcagtgaa atacgcaggt tgcccgtggg agctggggct
    36541 tgttgaaacc cagcaggcgc tggttgccaa tggtctgcgt cataagatcc gtttgcaggt
    36601 cgatggcggc ctgaaaaccg gtgttgatat catcaaagcg gcgattctcg gcgcagaaag
    36661 cttcggcttc ggcactggcc caatggtcgc gctcggctgt aaatatctgc gtatttgcca
    36721 cctgaacaac tgcgcaacgg gtgtggcaac tcaggatgac aaactgcgta agaatcacta
    36781 tcacggcctg ccgttcaagg tgacgaatta ctttgagttt atcgcccgtg aaacccgcga
    36841 gctgatggca cagctggggg taacgcggct ggtggatctg attggtcgca ccgacctgct
    36901 gaaagagctg gacggtttca ccgccaaaca gcagaaactg gcgctgtcga agctgctgga
    36961 gaccgccgaa ccgcatctag gtaaggcact ctactgcacc gaaaacaacc cgccgtttga
    37021 taacggcctg ctgaacgcgc agttgctgca acaggcgaaa ccgtttgtcg atggacgcca
    37081 gagcaaaacc ttctggttcg atatccgcaa taccgatcgc tccgtgggcg cgtcgctttc
    37141 aggctatatc gcccagacgc acggcgatca ggggctggca gccgatccta tcaaagcgta
    37201 cttcaacggc accgcaggcc agagtttcgg tgtatggaac gcgggcggcg tggaactgta
    37261 cctgaccggg gatgccaacg actatgtcgg taaaggcatg gcgggcggct taatcgccat
    37321 tcgtcctccg gttggttccg ccttccgcag ccatgaagca agtattatcg gcaacacctg
    37381 cctgtatggc gcgaccggtg gtcgtctgta tgccgcaggc cgcgcgggtg aacgtttcgg
    37441 cgtgcggaac tccggtgcta tcaccgtggt agaaggcatt ggcgacaacg gctgtgaata
    37501 tatgacgggc ggtattgtct gtattctggg taaaaccggc gttaacttcg gtgcgggcat
    37561 gaccggcggc ttcgcttacg ttctcgatga aagcggtgat ttccgcaaac gcgttaaccc
    37621 ggaactggtc gaggtcttaa acgttgacga tctggcgatc catgaagagc atctgcgcgg
    37681 tcttatcacc gagcatgttc agcatactgg ctctcagcgc ggtgaagaga ttctggcgaa
    37741 ctggtcaacc ttcgccacta aatttgcgct ggttaaaccg aagtccagtg atgtaaaagc
    37801 actgctgggt caccgtagtc gtagcgcagc agagttgcgc gtgcaggcgc agtaaggggt
    37861 agcaacaatg agtcagaatg tttatcaatt tatcgacctg cagcgcgttg atccgcctaa
    37921 gaaaccgctg aagatccgca aaattgagtt tgttgaaatt tacgagccgt tttccgaagg
    37981 ccaggccaaa gcgcaggctg accgctgcct gtcgtgcggc aacccatact gcgagtggaa
    38041 atgtccggta cacaactaca tcccgaactg gctgaagctc gccaacgagg ggcgtatttt
    38101 tgaagcggcg gaactgtcgc accagaccaa caccctgccg gaagtttgcg gacgagtctg
    38161 cccgcaagac cgtctgtgcg aaggttcctg cactctgaac gatgagtttg gcgcggtgac
    38221 catcggcaac attgagcgtt atatcaatga taaagcgttc gaaatgggct ggcgtccgga
    38281 tatgtccggc gtgaagcaaa ccggtaaaaa agtggcgatt atcggcgcag gcccggcagg
    38341 tctggcgtgt gcggatgtcc tgacgcgtaa cggcgtaaaa gccgttgtct tcgaccgtca
    38401 tccagaaatt ggcgggctgc tgaccttcgg tattccggcc ttcaagctgg aaaaagaggt
    38461 aatgacgcgt cgccgtgaaa tcttcaccgg catgggtatt gaattcaaac tcaataccga
    38521 agtgggccgc gacgtgcagc tggacgatct gctgagtgat tacgatgccg tcttccttgg
    38581 cgtcgggact tatcagtcaa tgcgcggcgg gctggaaaac gaagacgccg atggcgtgta
    38641 cgcagcgctg ccgttcctta tcgccaacac caaacagtta atgggctttg gtgaaacccg
    38701 cgacgaaccg ttcgtcagca tggaaggcaa acgcgtggtg gtccttggcg gtggcgacac
    38761 tgcgatggac tgcgtgcgta cgtccgtgcg ccagggagcg aagcacgtta cctgtgccta
    38821 tcgtcgtgat gaagagaaca tgccgggttc ccgccgcgaa gtgaaaaacg cgcgggaaga
    38881 aggcgtagag ttcaaattca acgtccagcc actggggatt gaagtgaacg gtaacggcaa
    38941 agtcagcggc gtaaaaatgg tacgtaccga aatgggcgaa ccggatgcca aaggccgtcg
    39001 ccgcgcggag atcgttgcag gttccgaaca tatcgttccg gcagatgcag tgatcatggc
    39061 gtttggtttc cgtccacaca acatggaatg gctggcaaaa cacagcgtcg agctggattc
    39121 acaaggccgc atcatcgccc cggaaggcag cgacaacgcc ttccagacca gcaacccgaa
    39181 aatctttgct ggcggcgata tcgtccgtgg ttccgatctg gtggtaaccg ctattgccga
    39241 aggtcgtaag gcggcagacg gtattatgaa ctggctggaa gtttaagctc tgtcccagcg
    39301 ccgcctcctc agaaaagagt cggcgctgaa attctccttt ctttctggaa agcgcctcgc
    39361 ataatctgaa gaaaaccaat gtaatacgct catctggatt gttaccggta gatgcccggc
    39421 gtatagctga ttccattatt caacgcagcg ccatataaag ggacagataa tggaatcgct
    39481 ctcagagaga acctcaacag gctaccagca aatccacgac ggtattattc acctggtcga
    39541 tagcgcccgg acggaaacgg tacgtagcgt taacgcgctg atgaccgcga catactggga
    39601 aattggccga cgaattgtcg aatttgaaca aggtggcgag gcaagggctg cgtatggtgc
    39661 gcagctaatc aagcgactat caaaggattt aagtctaagg tataagcgtg ggttctctgc
    39721 aaaaaactta cgccaaatga ggctttttta cctctttttt caacatgttg aaattcgcca
    39781 gacagtgtct ggcgaattaa caccattggg aattccgcag acaccatctg cagaattccc
    39841 atcggcaaag atttggcaga cgctgtctgc caaattgaga ggctgtttga tatttccaca
    39901 gcttttgtat tgcatctcct attttcggtt tgtatattca tgcaaataaa cgaaggaaag
    39961 ttgccatgat ttacattgaa cagcttgaat taatccataa aagtggtgat gtgttgtatc
    40021 cagtaaaaat aaccagaaaa tcatcaggaa aaactgcctt ccatcttgtt ccattcggct
    40081 taaataagac tcacgacctt ctagaggtgg aagatgcttc agaagcaatt cggctggtga
    40141 ttgatgaacg tcattccatt cgctgcagta cacttacagc aactattacg aataaaaagg
    40201 gcaagcgaat taagcggaca ggtatataca gtatcaaggg tgttaacata aaagaataca
    40261 acgtcaggta atggcacaga gcggtccgtc agttcaggtt tggctctgtg ccaaagatgg
    40321 gtcaggtcac acctgatcta ataaatttaa gccattaaat cagccttaac cttcaccacc
    40381 acctttttaa tctcacccgg ctcgccgaca acgcatcctg gtttatgcgg ttcacttggc
    40441 ataaacacgg cgaacattcc cggttttaag atgatggctt gctcgttatc aatggtgctg
    40501 caaagctgat aatcatcctc atggtggaac tcttcacact ggcgcgcagt gcctgccatg
    40561 ccaaacagaa tccgttcctc accgtttaat aacagctgga tatcaatgta ttgctcgtgc
    40621 aattccgctt ttttctcgac gggcgattga gtgttaaacg tcatgacatt cataaagata
    40681 ttgtcgccct gtaattcgta acgacccggc gctttttctt gcggtctggc agctaatgcc
    40741 agcgttaacg cgtcctgtaa cgcaggatgt aacccagcag acggtaatga ctgtacttca
    40801 cccatcatca taatttttct ccctgggcca acagcgcagc cccaagtaaa cctgcatcgt
    40861 ggcggtagtg cgccgccagt aaatcaacat gaaatgccgc tggctcctgc gccagatacg
    40921 ttttcaccaa cgccagatac ccttctgcca gaccaacgct gccaccgacc accacgcact
    40981 ggcaatcagt tgtggcttta atatcagcga tcagccttgc cagcacatgt gcggagcggt
    41041 gaatcagttg ctgcgcctgc tcgtcgccct gcccggcgcg tgtgaaaata gttctcgcat
    41101 ccgcgcccat gagttcacct tgcgctgccg ctgcaatacc gcgaccagaa gcaatcgctt
    41161 ccacgcaacc tgtgcgtcca cagccgcaga ctgggccgtg tggatcggca agcgtatgcc
    41221 cgatgtgccc cgccagaccg ctagggccgg taagcagttt accgccgctc actacaccgc
    41281 cgccgacgcc agtggaaacg gtgataaaca ccatatcggt tatatcgcct tccagcgcct
    41341 gatactctgc ccatgctgcg gcctgcgcgt cgttaatggc aatggtcggc aaattggaaa
    41401 gttgttccag cgttttgact aacggaaagt gtagcaatcc accaagatta tgcggattca
    41461 gcgccagcaa gctgccgtcg cgaataattc cggttgaagc gatggcaacc tgctgcgcat
    41521 gagcttgcaa cggggcgact aacgcggcta aggcatcacg caacgcctgc ggagtctggc
    41581 tggctggtgt cggaagttct cggcgatcgc ggatctgccc gtcagcgcca atcagcgcgg
    41641 cggcaagttt agtaccgccg atatcaatcg ccaacgtggt catagcaccg cctttttcat
    41701 cgctgtgttg taccactgac aaatgtgttc aagacgcgta atggcagaac cgaccgtcac
    41761 cgcccacgcg ccgtggcgca tcgcatctgc cgcctgagca ggcgtgttgt aacgcccttc
    41821 ggcaatcacc cgacatccgg cgtcgctcaa cgttttcacc agcgccagat ccggctcttc
    41881 tggcgtttca ggcgtggtat agccagaaag cgtagtgcca ataatttcgg ctcccagctt
    41941 ttggcatgcc aggccgtctt ccggcgttga gcagtcggtc atcgccagta aaccgtgatg
    42001 gtgaatacgt gccagcagcg tttcaacagg caccggacgc gggcggtcgg tgccgtcaat
    42061 ggcgataatg tccgcgcccg cctgcgccag cgcatcaaca tcttcaatat aggccgtgat
    42121 gcgtaccgga gaatcctcca gatcgcgttt cacaattcca ataatcggca cgctcaccac
    42181 cgcacgcgtg gcttgcagat ttgccacacc ttcaatgcga atggcaaccg cgcccgcctg
    42241 ttctgccgct aatgccatgg cagcgacgat ttcgggttta tcgagcgggc tgtccggaac
    42301 cggctggcag gagacaatca ggccaccgtt agcagcgatt ttttgatcca gttgtgcaag
    42361 taacgacata catcttccct tagcgaaagg cccggtacag agaccgggca acaggattaa
    42421 cttttggttt tgactaaatc gtttttggcg ctgccaaatg gcacggcacc gctaaatggt
    42481 ttgccgtcga tagcgtcatg agtacgcaat gcttccgggc gcagccaacg ctgaacgcgg
    42541 gaaggcatat ccagaccaat cagcaggatc accacaaatg tcagactgaa cgatagcgat
    42601 gccagcgcag tacccagatc cagacgttga gcgatcaacg cgccgatgat tggggccagt
    42661 gcgccgccca atgcgccaac gttgtaggta aagcccaagc ccgctgcacg ctggtcggta
    42721 tcgaaataac cgccaatcag tttcggtaag atcccggcga tcccttgtcc aagcatttgc
    42781 tggaagaaca gtaacagacc gagcacccag acgtttgcgc cgccaatcgc aaataccgga
    42841 ataatcaaca gctgcgaggc caacaggcta caaacgtagg ctttgcgggt tcccagccag
    42901 tcaccgagga agccgccgac acagcacccc accgcagccc caaagccgct aaagaacagc
    42961 acattggcga cagtatgcgg gttataagcc agatcggttt tcagatacgt tggcagcagc
    43021 gcctgaatcg gccatgagta gaggaaagca aacaacacga ccaccatcag cattacgccc
    43081 gttggccagc gtttacccgt actttgcacc ataaagctga taaagattgc ggcgcataac
    43141 agcccaagaa cagcgacgat cgcggcattt tgcaggttac cggcgaagca aaaccacagc
    43201 gcagtagccg ccgccagtgt cattacgata ttggcaatgc gatgttcacc acggtagaga
    43261 atatctacca tcgtgcgtac tggtgcttta cctgcatgtt tctctttcca gtcttccgct
    43321 tccgggatgt ttttacgcag ccagagagca aagatgatag gcaaaatgcc gataaagaac
    43381 agcgcacgcc agccccagac cggaaccacc aggctataga cctgagcggc aacgacggcc
    43441 cccacagaga agcctgaaat cagaaaacca ctggctttgt tacgcagatg ttttggccag
    43501 ctttcaatga cataggtggc gctggaaccg tattcacccg ccatccccat gccgatgacc
    43561 agacgcgcga taaacatggt gatgtagcct ggcgcaaagc cgcaggccag cgtcccggcc
    43621 gagaagagaa cgatgctggt gaccattgcc agacgacgcc cgtagcggtc acccatagcg
    43681 ccgagcatca ggccgccgaa ccagcgagag ataaaggctg cggagatcag acttgccgcc
    43741 tgcaccgtcg tcagcccgaa ttcgccctgt acttcggtga gtaccagggc gattaaaacg
    43801 aaatcaaaac cgtcaagcag atatcccaac caggcagcgg aaaatgcgcg ccattgtgca
    43861 cggttgagat ggcgatacca cgggatattc tgggttgtag tactcattgt gagtctcccg
    43921 cggtgggcga tgcccacacg ctttggtata aaaattgtag ggtacagatg cgtttatttc
    43981 ccctcacccg gtaggggcga gcgaggggaa acaactcacc cgcgctcttg catcaactgc
    44041 tgggccagcg ccttcagttc tggcagatat ttttcatcta ccggtccaaa cggtttgcgg
    44101 cacagcggca cagaaacgac atccatataa tggaggacag ttttcaggcc gcggaatacg
    44161 cccgttttga tcagtaaatc aatgacttta ttgcattcag tttgcagttt ctgcgcggtc
    44221 tggatatcgc cttctttcag cgccttaacg atcccctgat agcgccagcc catgatgttg
    44281 taggtactac cgataccacc atcagcgccc gccagcagac cagaggcgaa gatttcgtcg
    44341 taaccgttat agagcacaag atcaggatgt tcacgacgga tctgctccat ctgatagaga
    44401 tcgccagagg tctgtttcag cgcacctacg ccaggcaatg taacaagtgt gttgatctga
    44461 tccagggtca gttttacccc actcagggct ggaatgttgt acaccaccat cggcaaacca
    44521 tccgccgaat caataattgc ccgatagtga tcgcagtgtt cttcaaagct gaaaggatag
    44581 tagaacggcg tgacggcgga gacggcatcg aagccataac gtttagccga tgccgcaagt
    44641 tgttggcttt cggcggtgct gacgcaaccg acgtgggcga tgagtttaat cttacctttc
    44701 gcctcttcgg cgacgatttc cagtacctgt tcacgctcgg aaaggctttg tacaaaggcc
    44761 tcgccggtcg aaccacccac gtataaaccg tcgatgccct gctgaatatt gaactgaacc
    44821 aggcgacgca gactcgcttt atccagcgct tgttgttggt caaaaggagt caggagtgca
    44881 gccattacgc cacgtaaatt cgttgccata aatacctctg aagtgatgct tgtctgataa
    44941 acgatatacc tttatacctg ttataccaga tcaattaagc aacaccccat acagaaagct
    45001 tataatgcga tctgcttcac taaagtggca ttatttcttt ttgttggtgg tctgaccgaa
    45061 agcgtgccag gtagcagaga cgctgttgag atgcgattgc aacgcacgat cggcttcgtc
    45121 aggatcatga cggcggatcg catcaacgat cgcaatatgc tgttgataac taacgttgtt
    45181 atgttcgtgt agtgcctgat cggtaaccgt tgggcgtgcg gcaataagcc agtcgagcag
    45241 ggcaacgtgg atcgccatga agattgggtt accggggatc tccgccagca cgcggtggaa
    45301 atcaacgtct gaacgaatga atgccgcgtt gttatccagc gactgactgt tgatttccag
    45361 tgcttttgcc agcaaatcga tttgctcatc ggtggcatgt tcagccgcat agcgcaccag
    45421 actggattca aagaacagac gtaattgttc gaaatgggca atcccaccgg gatgagaaag
    45481 gaaatctttc gccatgccgg aaagctcacc gatgatagtg tccgcagaag gacgcgagac
    45541 gcgagcgcgt tcgccgttgt ttatttgcac cagacctttg cgttttaacg ctgccagcgc
    45601 ttcacgcacc gaaggacgcc cgacgttaaa gaacgccatc agttcgcgtt cagacggtaa
    45661 ttgttcacct tcgccaaatt cacgacggcg gatcatctgt tccagctctt cttccaccat
    45721 ttcggagagt tttttacgcg ccagcgggcg gctacgcaag ttgcgaccaa ttgcaggtga
    45781 agaatcttcg gtttgcgaat caaatgcgtt cataaggccc attctgtaag gtcagtgtga
    45841 ttaacatcat cagtgacatc ctatcacagg attgaaagta ggggaaaatg gcaggttttt
    45901 ctctttgtgc ctcatcatta ccataattaa cggaataatt aactattgcg aaaaattaat
    45961 gtgacgcaga taaaaacatc ccgtttgaat tatttataag actattcacg agcattatga
    46021 atattatgaa tgcgttcttg caaaataatc ataagcgcat attttttaat gaaaaattac
    46081 ctcacttaca attaaaaaca cgacatccgc accataaata gacttgcaaa aaatataaca
    46141 tcattgtttt caatctgccg tttatgggat tgaccgtttt cttttgacac ggagttcaac
    46201 aatgttcggc ataattatat ctgtcatcgt attaattacg atgggctatt tgatcctgaa
    46261 aaactacaaa cctcaggtgg tgctggctgc cgcaggtatc ttcctgatga tgtgcggtgt
    46321 ctggttaggg ttcggtggtg tactcgatcc cgccaaaagc agcggctact tgatcgtcga
    46381 tatttataat gaaatcctgc gcatgctgtc caaccgcatt gccggattgg ggctatcgat
    46441 tatggcggtg ggcggtatgc ccgctacatg gagcgcatag gggccagtcg cgcgatggtg
    46501 agcttgttaa gccgcccgtt aaaactcatt cgctcaccgt atattattct gtcggcaact
    46561 tacgtcatcg gtcaaatcat ggcgcagttt attaccagcg cctccggtct gggtatgttg
    46621 ctgatggtca ccttatttcc gacactggtg agtctgggag taagtcgtct ctctgcggtg
    46681 gcggttatcg caaccacaat gtccattgag tggggaattc tggaaacgaa ctccattttt
    46741 gcagcccagg tcgcgggaat gaaaattgcc acttacttct tccactacca gcttccggtc
    46801 gcctcttacg tcattatctc ggtggcgatc tcccactttt tcgtgcaacg cgcttttgac
    46861 aaaaaagata aaaatatcaa tcacgaacaa gcagagcaaa aagctctcga taatgtcccg
    46921 ccgctctatt acgccatttt acctgtgatg ccgttaatcc tgatgctcgg ctcgctgttc
    46981 ctcgcccacg tcgggctgat gcagtcagaa ctgcatctgg tggtggtgat gttactgagt
    47041 ttgacggtga cgatgtttgt tgagttcttc cgcaagcata acttgcgcga aacaatggac
    47101 gatgtgcagg cgttttttga cggcatgggt acgcagtttg ccaacgtggt aacgctggtg
    47161 gtcgcgggtg aaatatttgc gaaaggctta acgacgattg gcactgtcga tgcggttatc
    47221 aggggtgcgg agcattctgg tctgggcggt attggcgtga tgattattat ggcgctggtc
    47281 attgccattt gtgccattgt gatgggctct ggcaatgcgc cgtttatgtc atttgccagt
    47341 cttattccga atatcgcagc cggactacat gtaccagcgg ttgtaatgat tatgccgatg
    47401 cattttgcca cgacgctagc gcgcgcggtt tcgccgatta ctgcggtggt ggtcgttacg
    47461 tcaggaattg caggcgtttc gccttttgcg gtggtgaagc gaacagcgat ccccatggca
    47521 gtcggtttcg tggtgaatat gattgccaca atcacgctat tttattaagc cattaaaaga
    47581 caaaacaggc caccagggcc tgtttttgta ttacttcaca acgcgtaatg tcggtcgacc
    47641 accgcgtggt ggctgcggag gttcatcgtc aggatgagtg tcatcatcgt gatctggctt
    47701 gtcgccatca ataaccgaca taacggtttc gttgtctgcc gatgcctctt catcattcat
    47761 gatgctggta tcttcatcgt aggcagcttc aggctcaaac attgtgcctg cgccattttc
    47821 acgggcgtag atagccagca cggcagccag cggcacagaa acctgacgcg gaatgccgcc
    47881 aaagcgcgcg ttaaagcgca cctcatcatt cgccagttcc agattgccga cagcacgcgg
    47941 cgcaatgttg agtacgattt gcccgtcacg cgcatattcc ataggaacct gcacgccagg
    48001 gagcgtcaca tccaccacca ggtgcggcgt gagctggtta tccagcaacc actcatagaa
    48061 tgcacgcagc agatagggac gacgtggtgt tagctgtgac aaatccatac agattaactc
    48121 cggcccagac gcatttcacg ttctgcttca gttaaagaag caaggaaaga gtcacgctca
    48181 aagacgcggg tcatatagcc tttcagctct ttcgcacccg ggccgctgaa ctcgatgccc
    48241 agttgcggca gacgccacag cagcggagca agatagcaat cgaccaggct gaactcatcg
    48301 ctcaggaagt acggcttctg accgaagacc ggcgcaatcg ccagcagttc ttcgcgcagt
    48361 tgcttacgtg cggcatctgc ttcagaagct gaaccgttga tgatggtgtt catcagcgtg
    48421 taccagtctt tttcgatgcg atgcatgtac agacggcttt caccgcgagc taccgggtaa
    48481 acaggcatca gtggcggatg cgggaaacgc tcatccagat attccataat gatgcgagat
    48541 tcccacaggg tcagctcacg atccaccagg gtcggaacgc tctgattcgg gttgaggtca
    48601 atcagatcct gaggcggatt gtccttttcc acgtgttcga tctcgaaact tacacctttc
    48661 tcagccagca caatgcggac ctgatggcta tagatgtcag taggaccgga aaacagcgtc
    48721 attaccgaac gtttgttggc agcgacagcc atgaaaacct ccaggtatag tcagaatttt
    48781 tactgctacc agccaccagg tggccagtca gaagttgtgt tacccagtaa ggaacgactc
    48841 tctttgttcg aaaatcaaac aaaaaatgag caatacccga catttgggca gaaaattgga
    48901 tgatagttta ccagattttg cgacctttgt ggtgagtcga tgccggaaat ggggaaaaag
    48961 agatgcgctt tagtctgaaa tagttgactt agtcccttat tggcgatgtg gtttttgttt
    49021 tacctgtctg tcaggtggca gcaaaaagca actttccagt ttttacgctg attcagattt
    49081 tagctataaa aaaacccgcc gaagcgggtt ttttcgaaaa ttgttttctg ccggagcaga
    49141 agccaattaa cgtttggaga actgcggacg acgacgtgct ttacgcagac cgactttctt
    49201 acgttcaacc tgacgagcgt cacgagtaac gaagccagct ttacgcagtt cagaacgcag
    49261 ggactcgtcg tattccatca gagcgcgggt gataccgtga cggatcgcac cagcctgacc
    49321 agagatacca ccacctttaa cggtgatgta caggtccagt ttctcaacca tgtcgaccag
    49381 ttccagcggc tgacgaacta ccatgcgggc agtttcacga ccgaagtact gttccagaga
    49441 acgttggttg attacgattt taccgttgcc cggtttgatg aaaacgcgag ctgcggaact
    49501 tttgcggcga ccagtgccgt agtattgatt ttcagccatt gcctataatc ccgattagat
    49561 gtcaagaact tgcggttgct gtgccgcgtg gttgtgctcg ttacccgcgt aaactttcag
    49621 tttacggaac atagcacgac ccagcgggcc ttttggcaac atgcctttaa ccgcgatttc
    49681 aatcacacgc tcaggacggc gagcaatcat ctcttcaaag gtcgcttgtt tgataccacc
    49741 gatgtggccg gtgtggtgat agtacacttt gtcagtacac ttgttgccgg ttacagcaac
    49801 tttgtcagcg ttcagaacga tgatgtaatc accggtatct acgtgcggag tgtattccgc
    49861 tttgtgctta ccgcgcaggc gacgagccag ttcagtagcc agacggccca gagttttacc
    49921 ggtcgcgtca acaacatacc agtcgcgttt tacggtttct ggtttagctg taaaagtttt
    49981 cattaaaagc ttacccaata aatagttaca cgttggtgaa cacccaaacg tcttcaattg
    50041 ttgaggttca cacgacaaag tccggcaaac ctaccccttc gaatagccta tgccagcaca
    50101 caaaaagttt tgggaaaaaa ctttcttgta acgtggggtc gcaggattat agagaagtcg
    50161 gggtcaaaga tcgacccctt tttgtgattt gtgacaggtt ttaacccgcc aaatgctcgc
    50221 gcttcagata ctcttcgctt tgcatctctt gcagacgtga caggcaacgc tggaactcaa
    50281 acttcagccg atcgccctga taaatttcat acagcggcac ttctgcactc accactaatt
    50341 tgacatggcg ctcgtaaaac tcatccacca gcgcaataaa gcgccgcgct tcgctctcca
    50401 tcaaccgcgt cataactggt acatcaaaca acatgaccgt atgaaagagg cgtgagagcg
    50461 caatatagtc atgctggctg cgggcatcga cacacaaggt ggtaaaagag acagcaagcg
    50521 tctgattctc agcgcccatt gtcgccagcg gtcgatggtt gatttctaac gtcggtgaat
    50581 tttcgcgttt cgctcccgcc agcgccaacc atagtttatc catttgtgcc cgggtttcat
    50641 cgtggagtgg cgaaagccac agatgcgcct gagtgagtgt acgcagtcga taatcaacac
    50701 cagcgtccac gttcattaca tcacaatgct gtttaatggc atcgattgca ggcagaaaac
    50761 gcgcacgttg caagccattt cgataaagtt cgtccggcgg aatatttgac gtcgctacca
    50821 gggtaatacc gcgggcgaac agggctttca tcagaccgcc aagtagcatg gcgtcggtaa
    50881 tatcagaaac aaaaaattcg tcaaaacaga gcacgtcagt ttcggcttta aagcgatcgg
    50941 caataatttc cagcggatcg gtctgcccct gtaaggcagt tagctcttcg tgcacccgca
    51001 gcataaaacg gtgaaagtgc aggcgctgtt tccgctctcc cggcaggctt tgatagaaaa
    51061 ggtccatcag ccaggttttc ccgcgtccta caccgcccca catatataag ccacgcactg
    51121 gcgtatgctt tgtgtcttcg cgtttacccc acagcttacc gacccgcgcc attagcccac
    51181 tcgtcctggg ggctggtggc ctgctattga tgagttcttg ataaataatt tccaggcggc
    51241 tgacggcctc tttttgaacg tcgtcgggtt gatggctgcc ttcattgagc gccttcaggt
    51301 attgcgatgt tggggtaacg ctttgcatga tcttattatt attccttgaa taatcggtgc
    51361 gccgttgttc acggttgacg aaaaaaaggc cgttctacac tacgcgatat gcagtcggga
    51421 ttccacttct gtggaattaa cggttatagt ggcataatca gccgcaggca tggagcctga
    51481 agccaacacc ctacggaaac aaaagacaac gggagatgtt catgacctgg gaatatgcgc
    51541 taattgggtt agtcgtcggc atcattattg gtgctgtggc catgcgtttt ggtaatcgta
    51601 aactacgcca gcaacaggcg ttgcagtacg aactggaaaa gaataaagct gaactggacg
    51661 agtatcgcga agagctggtt agccactttg cccgcagcgc ggaattactg gataccatgg
    51721 cgcacgacta tcgccagctg tatcagcaca tggcgaaaag ctccagcagc ctgctgccgg
    51781 aactgtctgc tgaagcaaac ccgttccgta atcgtctggc agagtctgaa gccagcaacg
    51841 atcaggcacc ggtgcagatg cctcgcgact attctgaagg tgcatccggc ctgctgcgta
    51901 ctggcgcgaa gcgcgactaa tttatttttc gggcgcagcc attgcgccct cctcttctct
    51961 ccctccccga ctatcattta atctggtgtc tcattgttag ccgtctgaaa attcaataac
    52021 atcaaactgt tttgaatctc ttttcttatc attcaggtac gagagcagga ataatgaaaa
    52081 aacaaaccca gctgttgagt gcattagcgt taagtgtcgg gttaactctc tcggcgtcat
    52141 ttcaggccgt cgcgtcgatt ccaggccagg ttgccgatca ggcccctctc cccagtctgg
    52201 ctccaatgct ggaaaaagtg cttccggcag tggtgagcgt acgggtggaa ggaacggcca
    52261 gtcagggaca gaaaatcccg gaagaattca aaaagttttt tggtgatgat ttaccggatc
    52321 aacctgcaca acccttcgaa ggtttaggtt ccggtgtcat catcaacgcc agtaaaggct
    52381 atgtgctgac caacaaccat gtgattaatc aggcacagaa aatcagtatt cagctcaatg
    52441 atgggcgcga gtttgatgcc aaactgattg gtagcgatga ccagagcgat atcgccctgt
    52501 tacaaattca aaacccgagc aaattaacgc aaatcgctat tgccgactcc gataaattgc
    52561 gcgtcggtga ttttgccgta gcggtcggta acccatttgg ccttgggcaa accgccacct
    52621 ctggcattgt ttccgcatta ggccgcagcg ggttgaatct tgaaggtctg gaaaacttta
    52681 tccagacaga tgcttccatt aaccgcggta actccggcgg tgcactatta aaccttaacg
    52741 gtgagttaat tggcatcaac actgcaatcc ttgcgcctgg cggcgggagc gtcgggattg
    52801 gatttgccat ccccagtaat atggcgcgaa cactggcgca gcagcttatc gactttggtg
    52861 aaatcaaacg cggtttgtta ggcatcaaag gcaccgagat gagtgccgat atcgccaaag
    52921 ccttcaacct tgacgtgcag cgtggcgcgt ttgtcagcga agtgttgcca ggttctggct
    52981 cggcaaaagc gggcgtcaaa gcgggcgata ttattaccag cctcaacggc aaaccgctga
    53041 atagctttgc tgagttgcgc tctcgtatcg cgactacaga gccgggcacg aaagtgaagc
    53101 ttggcctgct gcgtaacggc aaaccactgg aagtagaagt gacgcttgat accagcacct
    53161 cttcgtcggc cagcgctgaa atgatcacgc cagcgctgga aggtgcaacg ttgagcgatg
    53221 gtcagctaaa agatggcggc aaaggtatta agatcgatga agttgtcaaa ggaagcccag
    53281 ctgctcaggc aggcttgcaa aaagacgatg tgatcattgg cgtcaaccgc gatcgggtga
    53341 actcgattgc tgaaatgcgt aaagtgctgg cggcaaaacc ggccatcatc gccctgcaaa
    53401 ttgtacgcgg caatgaaagc atctatctgc tgatgcgtta atgtcgtaaa ccgggcatca
    53461 ggcttacgtg tgatgtccgg ttaactcgtg gtatgctgct gccgttccct tttttaatga
    53521 cgcctccatc atgtttgtga agctcttacg ttccgttgcg attggattaa ttgtcggcgc
    53581 tattctgctg gttgccatgc cttcgctgcg cagccttaac ccgctttcca ctccgcaatt
    53641 tgacagtacc gatgagacgc ctgccagcta taatctggcg gttcgccgcg ccgcgccagc
    53701 ggtggttaac gtttacaacc gtggtgtgaa caccaactct cacaaccagc ttgagatccg
    53761 caccctggga tccggtgtaa tcatggatca acgcggttat atcatcacca ataaacacgt
    53821 catcaacgac gccgatcaga tcatcgtcgc cttacaggat ggacgtgtat ttgaagcatt
    53881 gctggtggga tctgactctc taaccgatct ggcggtactt aaaattaatg ccactggcgg
    53941 tttacctacc attccaatta atgcacgtcg cgtaccgcac attggcgacg tagtactggc
    54001 gatcggtaac ccgtacaacc tcgggcagac cattacccaa gggattatta gtgccacggg
    54061 tcgaatcggt ctgaacccta ccgggcggca aaacttccta caaaccgatg cttccattaa
    54121 ccacggtaac tctggtggcg cgctggtgaa ctcgctggga gaactgatgg gcattaacac
    54181 gctgtcgttt gataagagta acgatggcga aacgccggaa ggtatcggct ttgcgattcc
    54241 tttccagtta gcaaccaaaa ttatggataa gctgatccgc gatgggcgcg tgatccgcgg
    54301 ctacattggc attggtggac gtgagatcgc accactgcac gcgcagagcg gtggtataga
    54361 tcaactgcaa gggatcgtgg ttaatgaagt gtcacctgac ggcccggcgg cgaatgcggg
    54421 tattcaggtc aacgatctga ttatttcggt ggataacaaa ccggccatct ctgctctgga
    54481 gacgatggat caggtggcag aaattcgccc tggttcggtg atcccggttg tagtgatgcg
    54541 tgatgataag cagttaacgc tgcaggtcac cattcaggaa tatccggcaa ccaattaagt
    54601 cgagtgctca aaacaaaaaa ccggagtctg tgctccggtt ttttattatt cgctaatcaa
    54661 ttacttatta acgaactctt cgcccagggc gatatctttc ttgagcgtat ccagcatacc
    54721 ttccagcgcg ttctgttcaa atgcgctcag ggtaccgata gatttacgct cttccacgcc
    54781 gtttttaccc agcagcagcg gttgagagaa gaaacgggcg tactgaccgt cgccttcaac
    54841 gtaggcacat tcgacaacgc cttgttcgcc ctgcagtgca cgaaccagag acagaccaaa
    54901 acgtgcagct gcctggccca tagacagggt tgcagacccg ccaccggctt tcgcttcaac
    54961 cacctcagta cccgcgttct ggatacgttt ggtcagatca gccacttcct gctcggtaaa
    55021 actaacgcca ggaacctgtg acagcagcgg cagaatggta acaccagagt gaccgccaat
    55081 aaccggcact tcaacttcgc ctggctgttt gcctttcagt tccgcaacaa aggtgttgga
    55141 acgaatgata tccagcgtgg taacgccgaa cagtttgttt ttgtcataaa caccggcttt
    55201 tttcagcact tcagcagcaa ttgcaactgt ggtgttaacc gggttagtga taataccaat
    55261 gcacgctttc gggcaggttt tcgcaacttg ctgtaccagg tttttcacga tgccggcgtt
    55321 aacgttaaac aggtcggaac gatccatacc cggtttacgc gctacacctg cagagataag
    55381 aacgacatct gcgccttcca gcgccggagt cgcatcttca ccagaaaaac ctttgatttt
    55441 cacagcagta gggatatggc tcagatcgac agccacaccg ggagtcactg gagcgatatc
    55501 atacagagag agttctgaac ctgaaggcag ttgggttttt aacagtagtg caagcgcctg
    55561 gccaataccg ccagcagcgc cgaggactgc gactttcatc ctaaactcct tattatattg
    55621 ataaactaag atatgttgct ccgctgccgc gaccttaatc cacaaaattg ccgtttacaa
    55681 tgaccacata tcaagaatgt gtagtcacgc aagtttagcg tttatgcatt taattgccgt
    55741 aatcaggaac ctaacttacg taattaacag tcgcttatgc attagcgcaa cattccaaca
    55801 ggtggtgaca atatacccta ccgttcagcc aaaacaacat caatttgata acaattaatt
    55861 tacttttaag cagaatttgc atgccgtgac gcaggcatgt ttctcaataa cgaaatttga
    55921 taaaatcccg ctctttcata acattatttc agccttcttc agggctgact gtttgcataa
    55981 aaattcatct gtatgcacaa taatgttgta tcaaccacca tatcgggtga cttatgcgaa
    56041 gctcggctaa gcaagaagaa ctagttaaag catttaaagc attacttaaa gaagagaaat
    56101 ttagctccca gggcgaaatc gtcgccgcgt tgcaggagca aggctttgac aatattaatc
    56161 agtctaaagt ctcgcggatg ttgaccaagt ttggtgctgt acgtacacgc aatgccaaaa
    56221 tggaaatggt ttactgcctg ccagctgaac tgggtgtacc aaccacctcc agtccattga
    56281 agaatctggt gctggatatc gactacaacg atgcagttgt cgtgattcat accagccctg
    56341 gcgcggcgca gttaattgct cgcctgctgg actcactggg caaagcagaa ggtattctgg
    56401 gcaccatcgc tggcgatgac accatcttta ccacccctgc taacggtttc accgtcaaag
    56461 acctgtacga agcgatttta gagctgttcg accaggagct ttaatctctg ccccgtcgct
    56521 tctggcggcg gggaaaatgt tgcttatccc tctcaacccc ctgctttccc ctgcgattaa
    56581 tttaacgaat agtgcgtttt actgcgacat gtcattcaca taatgaatac atacggtaaa
    56641 aaaagcacat tatgcaaaat tcattatcta attgaaaata ctagaattaa aaataaatga
    56701 ccgtgttttt aattcttttt tgttattaaa attcacattt tcaacactta gtatcaactg
    56761 aaacagttag catggtatta attagttcaa taattagtat gtgcttgatt ttgtgatatg
    56821 ggtcacgaaa caaaggccca gctaaaagat tatgtcgagg taaaaatcat gaaaatcaaa
    56881 accactgtag ctgcattaag cgtactttct gttctctctt tcggtgcatt cgctgccgac
    56941 tccattgatg ctgcacaagc acaaaatcgt gaagcaatcg ggaccgtatc cgtaagtggt
    57001 gtggcgtctt cgccaatgga tatgcgtgaa atgctgaaca aaaaagcgga agagaaaggc
    57061 gcaacggcct accagattac tgaagctcgt agcggtgaca cctggcacgc tacggctgaa
    57121 ctgtacaaat aaaccctcat cgtcttgtcc gacgatattg cccccggttc gggggctttt
    57181 tttgcgctaa tgacgaacat taaaacgcaa atgcccttcc agctcttcct ctgcctcatc
    57241 aaatagcaat attaacgcgc caaaacggcg acgcgttttc tctcccagat gaacaaattc
    57301 aatctcaagt ggtagcggca ggacatcgtt cattaacaca tcccatagtg agtcgagatc
    57361 gcgtacctta tctttcgcca gaccaaaggt ttggctaaag tcacgataaa aatcctcctg
    57421 actctcaatc tcatcaaaat caaaggtata aatattcatc tattgccacc gtcacgtttc
    57481 gcggcgagtt ctgccgtgca tcgctaagta tagccatgaa aaaaccgaca cttttggcgt
    57541 cggttttgac ctaactatcg gtcaacgcat gttgatactt atggagcata cccgccagcc
    57601 gatgaaccgg ttccgtcacc tgcggtggcg cttgccagat gcgtagcttt tcctggtaga
    57661 tttcaagttc ttccagcaac tggccaaagt accgacgacg tttatcatcg ctacgggcag
    57721 atatcacatg gtctgctgtg cggcgcattt gtcggtgaaa cgccgataaa tcctcgttaa
    57781 ccgggatcgg cgcatcacgc aggcgctggt gcgcgataat catcgtcagc gccaggcgaa
    57841 atttcggcaa atcccctggg aacttattca tcagcaaaaa cagctgctga taaagtgccg
    57901 ggaggtggtt ctctttacga cgtgccacat tggtagtcat cgcggaaaca gcggcagaaa
    57961 caaactgatt aagcagtaca cgtccggtcc tgtcgcgcga tttatcccgc acaagcaaaa
    58021 taacggtgaa cgcgagcaca cagccgacga tttgccctaa tgcgctgtcg agaaactgac
    58081 tgaaatggaa agtcatcggg ttatccagca cgataatatt tatggtgctg gccagcgccc
    58141 ccatcgagcc cagtcgccgt tgctgtactt ctataccgag gaaaaatccc agcactgcca
    58201 ggctaataca cagcagcaac atgctctgtt gggtattagg gataatcacc aaaaagtaga
    58261 gcagccctaa cggcagcgcg gccagcgtcc cgtagataaa gtcgatcgcc accatgcgtg
    58321 gattcggcaa acgcattgcc agtgacgtca ctaccgcaat catcaccatt gcaccactgc
    58381 cggaagtcca gcccgtccac agccagaaaa gcgtgcccag aatgcaggaa agtgtggttc
    58441 gccagaagtt aaccatcgca tgatgacgtt cggctgactc tactttgact tccggttcgc
    58501 cttgcaggat ctcttcttcg gtggcgttga tttttgtgtt actgataacg ccgcgcttga
    58561 gaagctgata acgcgttgcc gccgcgaccc agctataaat ggtgacaggc gtttcccgtt
    58621 ccccggtcca ggcgataact ctccgcaggc gtttgagctg cttgtggacg tcctgcgcgg
    58681 tttctaccgg cgtgtcaaaa aattcgcgga aagtatcagt gatcaattcc gggcgcgtat
    58741 tctgaataag ataagtttcg caggattggg taatcagcgt cagcgatagc gtattgatcg
    58801 cttttaaacg tcgattggcc cgcgcccagc gggaagattc catattcagg ttgctgcgca
    58861 tgccttgtag cgccgtggtg cgtcgcacca ggtcgcccca ggctttatcg acaacttcac
    58921 catcgccatg cttgatacag agttgcatta attgatattg cgcgaccagc aaactttcca
    58981 gctctcgatc cacttcttgt ttgatcgatc gcggagaaaa gagcaaatcc gccataatcg
    59041 cacacacaat accgataacg atctcgctac aacgttcgac ggcaaactgc ggcgtaagca
    59101 atggttccgg ctgaatggtg atcacaatga tcagcgcggt ataaccggcc agcccccacg
    59161 cgtacgagtt ttctattcgt accagcgagg atatccaggt acaaaaaccg gcccagatac
    59221 agcacaccag aatcatcaat aatggtgcgc ggatcatcgc aatgatgatc accagtccgg
    59281 caatacagcc aataaatgtg ccgatgatgc gcaaaaagcc acgataacga atagcgccag
    59341 aatacggttc acctcccgca gcaaaggccg gaccggcggc aacaatcgcc gctgtcagta
    59401 ccgcccagcg tggcgtttcc agctggaagt gaaagccaac aaacagcgcc agtacaatgg
    59461 cggtcgccag ttttaccgca aagcgaatat gttggttagc aatggagaaa atacccatcg
    59521 tgattaacca aactcacgca ggcgatgggc cattttacgg aagaacgaat cctggctttc
    59581 gtcgcgatct tgtttgccag tgaccaccac tgtagcagtg gtgcccgcag gccagatgtt
    59641 ctcttgctgg ttgtcgagac gaatacgaac cggaacacgt tgcgcaagac gcacccattc
    59701 aaggttagag tctatagtcg ccatcccttt gtcgtcacgc gtgctgctgg cgttggtgac
    59761 ccctgcggca acactatcaa cagtcccttt cagcactttg ttactgccaa gcggcgtgat
    59821 ctctgcacga taccccggac gcaccccttc cagcttagtt tcttccatat aggccagtac
    59881 atagaaggag ttctgtttca ccagcgcaac cgccgttgat cctcgagtaa taaactcacc
    59941 ggtatagacg ttgaggttgg tcacccagcc atctgctggc gcgcggatca ccgtgcgttc
    60001 aagatccagt tttgccagat cgcgggtcgc ctgcgctttc gctaactgat gcagaaccgt
    60061 ttgtagtacg ttgttagcct ggtcgatctc ttcgcgagac atcgcctgca caccgagacg
    60121 gttacgacgt ccggcctcct ggcgtttctc ctgtgccagt acctgataat aagcaacatc
    60181 ggcttgcgct tcctcaagcg ccttttgata gcgcggctgg tcgatggtga acagtatctg
    60241 tccttttttc accagctggt tatcatgaac attcacctgg gtaatgagtc cagaaacgtc
    60301 cggcgcgatc gcaatgacgt cagcgctaaa gcgcgcgtca cgcgtccagg gggattcggt
    60361 gtaatagacc taggcattaa aaattgcgat gaaggccaga atgactaata cgaccgtgat
    60421 ggccgtacgg gagaattttc ttattagtgt tttcacttca acctcaaacg aacagtcgcg
    60481 atatcaaata aaacaagcag caatagagcg cggtgttgaa caacgccgga tgccagacaa
    60541 agtcgtagat acctgttggc acaagtaccc ggcgcaccag ccagaaaatc gccagtgata
    60601 aaagcaattc aaaaaatatc ggtgggaagg acagcccaaa caccacgata acgggaaaca
    60661 gactcatgtt gaccttggtt gtatagagag agcaggcgtt attattttca gcatctgtcg
    60721 ccgcagagaa gggcatggaa agccgggcga gagcaacatt gctgtagatt gatatttaat
    60781 atattagcgt aactgttatg ctattatcta tattagactg gccccctgaa tctccagaca
    60841 accagtatca cttaaataag tgatag
//
LOCUS       DADMHM010000005        51640 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.005, whole genome shotgun sequence.
ACCESSION   DADMHM010000005 DADMHM010000000
VERSION     DADMHM010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 51640)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 51640)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..51640
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.005"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..842
                     /locus_tag="JN125_000278"
     CDS             <1..842
                     /locus_tag="JN125_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HAY8870180.1"
                     /translation="CSELHIAPSTYYHCQQQRHHPDKRSARAQHDDWLKREIQRVYDE
                     NHQVYGVRKVWRQLLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTVSRKTVATGDR
                     VNRQFVAERPDQLWVADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDA
                     LEQALWARRPSGTIHHSDKGSQYVSLAYTERLKEAGLLASTGSTGDSYDNAMAESING
                     LYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLGRLGHTPPAETEKAYYASIGNND
                     LAA"
     gene            943..2232
                     /gene="traO"
                     /locus_tag="JN125_000279"
     CDS             943..2232
                     /gene="traO"
                     /locus_tag="JN125_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001272004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraO"
                     /protein_id="HAY8870181.1"
                     /translation="MSAEQDAGKSGKKLAALLGLGSIILFGGGYIAFSKLSGSNSDMQ
                     SAVNINSAASGGTRSVTETPHYRELLRADNERGAAAAARNNQTFIASLPQGLDIPDTP
                     EKQQQPAAKPENYAHRQASGTPQEDRAASEKRMERLQKLIVRIKDQHPAGSTPTIATT
                     MWNKSPAETTGQNGTQQFALQNASLSTPVAEKGIQLIPALTRIPAYIDTAVDSDNPSS
                     KVIATIPAGPWAGATLFSPGVKLVGNGVEIHFDRMSWNGMDLKVNAYAQREDNLMSSV
                     ASNVNTRWFKHIILPSVLGGVGSIGTLYKDANTQVIQGNYGTVTGRVGMPSGEAVAGV
                     IAGGMAERGSQILTRQAESEPYKQVEVYQHEVVSILFVDPVMTNDARSSSLSSGISPS
                     VNRTSQAEQRSQARMQTAMEQRKAVMQRRYDEQPETP"
     gene            2232..2936
                     /gene="traP"
                     /locus_tag="JN125_000280"
     CDS             2232..2936
                     /gene="traP"
                     /locus_tag="JN125_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000801920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IncI1-type conjugal transfer protein TraP"
                     /protein_id="HAY8870182.1"
                     /translation="MKPETEIDETGSFGEPEEKPAPFWKRSVWGISVATWGLCAVVLL
                     AAIWYLFLRAPSETGMPPFNDADAGVQTWQTTQESSPSVQSTETMTVRTGEDMSQLAR
                     DVKTELDNRDEKIQATLNMLHDSINKLGEAIKKDEEYAQETRRQLDDIRSRLNGIMTQ
                     KSVTESSSTPHPAKKKTSSVLNGMKIMSMETGMAWIRWQGSTWAVREGQTLGNVVIQR
                     IDPTTRTIITSAGTLR"
     gene            2936..3463
                     /gene="traQ"
                     /locus_tag="JN125_000281"
     CDS             2936..3463
                     /gene="traQ"
                     /locus_tag="JN125_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001055571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraQ"
                     /protein_id="HAY8870183.1"
                     /translation="MNMDALTAIENFASSIFSAGMDFLFTWGEFIGVISMITLFARAR
                     SAGPVKMSPGKFIAGMLTSCMLVSLPAMINAGGVQMGFRADSFGPIAYVQPQTFGAAA
                     GAANAVLSLAKLAGVGFVMNGISIWRKAGLDGHTALSASESVSKGNVKFIAGVLLVFI
                     DRVLNALLASIGIVF"
     gene            3514..3918
                     /gene="traR"
                     /locus_tag="JN125_000282"
     CDS             3514..3918
                     /gene="traR"
                     /locus_tag="JN125_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000086965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IncI1-type conjugal transfer protein TraR"
                     /protein_id="HAY8870184.1"
                     /translation="MSRIRVVAARLYAAFIHAQLFVMSCRSKLTKYLLLIPMMLLPKA
                     VLADGDLADMVRNVGEGAKTAQSSSITIAQFIGVILFLGGLIGLKKVGKQGGMGLAGC
                     IVSIVIGAVLVAGPEMMSRSQKQLGISSISIG"
     gene            3982..4170
                     /gene="traS"
                     /locus_tag="JN125_000283"
     CDS             3982..4170
                     /gene="traS"
                     /locus_tag="JN125_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001277253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative conjugal transfer protein TraS"
                     /protein_id="HAY8870185.1"
                     /translation="MSAWSPEHITLRRTENGNVIAHDSRDDQEFIFAECCSDEIANII
                     LEAVKCYTSTEPAHATQH"
     gene            4154..4954
                     /gene="traT"
                     /locus_tag="JN125_000284"
     CDS             4154..4954
                     /gene="traT"
                     /locus_tag="JN125_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001164783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IncI1-type conjugal transfer protein TraT"
                     /protein_id="HAY8870186.1"
                     /translation="MQHSIKDLWLYPFPEIDVVHTQEALLPEPELTTPGRCICCRQNV
                     RHRFRLDDSWPLRQLTDTISNTRVRLNKATEHLVKLIRRGEPVATGKKEKYNTAVKAA
                     ERALEHARLSARRLSLRHVQKAEITSTEPLSEKEQELFHEDGPPYSLCAFCHAWHSLN
                     GYAAAQGVMVWLPDLHPSTVVALNRRSLQEVFSNDKFRVRRGREALSALMQNRLAVED
                     KFRSFRPADFADVFRRYPPSGRSPLREKMNGIALILTPDSFIKKEYVD"
     gene            5044..8088
                     /gene="traU"
                     /locus_tag="JN125_000285"
     CDS             5044..8088
                     /gene="traU"
                     /locus_tag="JN125_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IncI1-type conjugal transfer protein TraU"
                     /protein_id="HAY8870187.1"
                     /translation="MNINRLIFTIEDCLNTLSRFSVASSFVEYCDLRTVIGLDRQDRE
                     RRPWLNSPYIAATKRGEYLSVFEVSGAFREMDEASDQTGSGSLESLITSMSDSLNTAY
                     KNSGHKISCVFERDPEMGKEEIEDMVAPQKRSLANTGIQLQDVVDEKVTTLSPWLVRE
                     RCWLAIWSGPDLISNSDRTAHDELVRRLAERVPKARFAQSPWQWTLSALKIRHEAFLD
                     NVEQALRHSSDGLILRLLDIHEVGREIRRQTERYSTPRNWQPHLPEDAQPAGYRWTDD
                     ESVLHAPSLHLQLFNTQVTTQGNLVQAGGLWHGMVSITLPPQNLQTFNELVRAVPRAV
                     PWRIRMDLMPGGMKALNLKKTLLTYSSFISAVRPMYESVMTLAATDEKEPVCIMTIMA
                     STWGKTREICARNQAILKSAIEGWGVCGTTTTFGDPRRAWVNTILAASGGSGPVPLYP
                     PLSHAISLFPLNRAGSVWRGKGNLMLHTEDGSAFEVGLASSQQNKHTELAPGDPGLGK
                     SVLINTLSEIQISSAQKNLPFIAYIDKGYSAQGLVQLIRDSLPQERKDEAVGIILSND
                     PDYTRNLFDVMYGAKKPITPEKNFMSSVLCALCVDTGTGQPCNPGDTRQIINQLIELA
                     FKEYGENNPRLYRASTEELVDSALQDSGLYEKHDAAWWARSTWFEVRDMLHNAGYIMA
                     AQRAHYQAMPQLPEVSSMLGHTSLRDVFGTVQRDGSNELLLDYIRRALEQGHNDYPMI
                     SGYTRFMINPETRVIAVDLNNVAGDKTPAGRLKTGIMYLLAGQIAGGDFTLPQYRDEV
                     LKQLPREYHEIALKRINQLDQEVKTKVYDELHNARGIDFIWENLDTQEREQRKFAIRT
                     VLSTQYLRDYPESVLKSANTLWLLRYKPEDIPVLRDNFNVPEFMLKRFLKMPEGPAPD
                     GSGVPVLGVFRVKSGTLARILKFTVGPLELWALNSSPKDSALRKTLTNKLGSVRARKI
                     LAENFPRGSATSLIEHRAGQHNSDNVIEELASELIRKQGYNL"
     gene            8088..8702
                     /gene="traV"
                     /locus_tag="JN125_000286"
     CDS             8088..8702
                     /gene="traV"
                     /locus_tag="JN125_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000337395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IncI1-type conjugal transfer protein TraV"
                     /protein_id="HAY8870188.1"
                     /translation="MCTIHITPRCRRPARGQVFLKKLEVKGDSFSFTLPSRVFRLHPA
                     PNHRVIYASDARTQGKVTGMRLLLPSSTDELITTAIWQVSVPDEAPFDVQHVIQWILP
                     SPLASLMSDDTWLWPSVPGTPALSAGDWPVMDTDPSTLRRVRRRSFSIIDNRNRKGYI
                     TRRYQCFPLAPLPEDRKYDSLPDLVLHPEQETIKCKEKHYSQPL"
     gene            8669..9871
                     /gene="traW"
                     /locus_tag="JN125_000287"
     CDS             8669..9871
                     /gene="traW"
                     /locus_tag="JN125_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001387490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IncI1-type conjugal transfer protein TraW"
                     /protein_id="HAY8870189.1"
                     /translation="MQRKTLLAALIATLSGTACQAHAYSVTVVASRPVEEQVIPRMEA
                     IKDVLGNILSTQTATGTAINQNSEKLASVIAQNGQATRQQMIFSNETQRLEEARKSFT
                     VPDSICSESASGIATESKSASASAASKLSKGGGVSNRSLRDRLASAANSPVREAYDGA
                     AIHASYCTEAEYARFGGTAVCPSVGEIPGGDSQVRSIYHGAGTADTPAALTWDQKQID
                     AATAYMKNTSRPSAGRALGKGEVNTQSGRTYVGLQNEYNGIIDSASNPQLTLIADSTP
                     NESTRKALAETLQSDSAAAYFDQVASSEAKARGYMSTREFEAFEAGRRYANTAYLVDL
                     QEMQGDNLLRELVRITAQMNWQLNDLKEQIRQGNVISGQQLALTARQYYEKQLGSLEK
                     TINQANAR"
     gene            9900..10484
                     /gene="traX"
                     /locus_tag="JN125_000288"
     CDS             9900..10484
                     /gene="traX"
                     /locus_tag="JN125_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001037983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IncI1-type conjugal transfer protein TraX"
                     /protein_id="HAY8870190.1"
                     /translation="MNKLPENSDQTKNVKKSLSITRIATRGIINIFVPLMETRLITNS
                     VQHMLEQQKRRLDRFRQVNNKKAQLHLTWEEALQASHMSVDDLDRRFRRRRTVWRFCC
                     WSLLAIALFLSGMLFAASSLPLTTLVRAISTLVLILSGVALCASRALIVTYRLWQLHE
                     RKVSEPEQGTFRDFLNTRNGWRNATLIAVTSKQY"
     gene            10581..12749
                     /gene="traY"
                     /locus_tag="JN125_000289"
     CDS             10581..12749
                     /gene="traY"
                     /locus_tag="JN125_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000698353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IncI1-type conjugal transfer membrane protein
                     TraY"
                     /protein_id="HAY8870191.1"
                     /translation="MKILLRALCAGLAISSLPAMASVTYQDIVSAATNPDDLSRQALV
                     TIFGDVVTNPLSTSAPTLIGSMFGAFNSIIAVLAVVWFMFIGIRHVVRSGHQGQVFST
                     GRDVVGTLSVVAGFLMIVPTGNGWSLAQLIMLWGASIMGVGSANVMVQLAADNIANGY
                     SMTVQPVQASTRTAARGIFEMELCKYAVNAGLNDFNQTAKSSTSLMTESAKTASGNYT
                     VTVSNGSGICGTASLSVEGNGTTDQSTIGKFFNPFSKNEYSGVISAQRAAMDNMISDM
                     DNAASEFVTTFLEKRNSGNGTLPDIETRIQRAADEYERAVQKSLPIDNGEQSRKEALK
                     SYLTTYGWVTLGAWYQTFATANQRLAELADRAPAVTSMSSLGEVGDTDLFSAVMGAYK
                     TQLQNSTYTPPLGTITSADEQLLSKTSTPQDALIKPTEKFGQWLTNNIATEWTDSGTS
                     SNQVNPLIKMKNIGDKTMVAAEGIWITYTSARVITSGTGSSIFGKFIDLTTSAISTLN
                     ALLEALAPPVYFLLLLLFCAGFSLSIYLPFIPFIFWMTGIGNWVISVLIGCTAGPLWG
                     ATHLGTSQDRGSRAAYGYIYLIDSMIRPPIMVFGFFFASVAIIAIGTILNFLFGAALT
                     NVQISSFTGIFSLAGFLLLYARSCTTIVAAAFALQAYLPDHVINFLGGRDGVNTLGNM
                     AGSIKEIFAGSNRNIRHAPNIREEQIKRMNNDNNKDGIKG"
     gene            12825..13439
                     /gene="excA"
                     /locus_tag="JN125_000290"
     CDS             12825..13439
                     /gene="excA"
                     /locus_tag="JN125_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000578646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid IncI1-type surface exclusion protein
                     ExcA"
                     /protein_id="HAY8870192.1"
                     /translation="MIGAYANRGGTHSKKETCVIAFALFYIIFAVPLLIIWNTPTSWG
                     LAVIPTGFLLYSGYKNGRKKRAIVNNILEQIKTEYHDVFDPDPSYEHKSIPSLYFGID
                     IKKGTALYIRLYPNKTLDVIGIDIDNFTRTVVRENCMEIHTKYVNMPMLELPIGVNSA
                     RSIANTLHAMASRGYDYPVDFPRLIQEKRKEWEQIAGMPVAEVF"
     gene            13537..13746
                     /gene="hha"
                     /locus_tag="JN125_000291"
     CDS             13537..13746
                     /gene="hha"
                     /locus_tag="JN125_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001611712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin expression modulator Hha"
                     /protein_id="HAY8870193.1"
                     /translation="MAKTKQEWLYQLRRCSSLKTLEKIIAKNQGTLASDKIEAFNSAV
                     DHRLAELTMNKLYDKVPASVWKHVK"
     gene            complement(14170..14466)
                     /locus_tag="JN125_000292"
     CDS             complement(14170..14466)
                     /locus_tag="JN125_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000115013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870194.1"
                     /translation="MSALRHVLSGILFSGKNRLQVLAKTSGGAGFGALVGEELSITDT
                     IETVVTGSVRANNGVLSPVMEKRMINLLIIVLRAVVAVANALIAVLELIRELID"
     gene            14766..15017
                     /locus_tag="JN125_000293"
     CDS             14766..15017
                     /locus_tag="JN125_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001291967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870195.1"
                     /translation="MSEKWSKEFDSCFQVGSIEEIADALEKRSGSEENALAMLAMTAF
                     TLMTRRGICEMQNVAPDGKGIRLELIGFRENETIPDTLH"
     gene            complement(15089..15241)
                     /locus_tag="JN125_000294"
     CDS             complement(15089..15241)
                     /locus_tag="JN125_000294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001618166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hok/Gef family protein"
                     /protein_id="HAY8870196.1"
                     /translation="MPQRTFLMMLIVVCVTILCFVWMVRDSLCGLRLQQGNTVLVATL
                     AYEVKR"
     gene            15556..16647
                     /locus_tag="JN125_000295"
     CDS             15556..16647
                     /locus_tag="JN125_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000426061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein finQ"
                     /protein_id="HAY8870197.1"
                     /translation="MEMSQLKQPIFLKKIKKVINTIPGLEEQIFACRNKKRSDNPLLF
                     IDRKDEERILMSRLQSQQKNEELASKLESLFHGNELSSPHSILCFIYWRYTKKIYRLS
                     EDIISDVANTYVDNIPAQILKELPSWSIYVSAENLHTILPTSYPIHGFFFYPFLDNNG
                     NIIRLFIIDDLKQSQGTTGLKEKDVDVVNNIIRIKDSREGLLDSRKMECIDGEVVVTV
                     NEKLKDFRDREFNLLNAQISMVLYICSQINDIKEKNQFKRSEKHKKHVHTHHELPAQN
                     IREWDVGIRMGQAIRQYRQAEPTGKERTTIGSKRPHIRRGHWHTYWTGSKKPELAHER
                     KPRLIWLPPVPVNLEDVNKLPVVITPIDK"
     gene            16954..18162
                     /gene="trbA"
                     /locus_tag="JN125_000296"
     CDS             16954..18162
                     /gene="trbA"
                     /locus_tag="JN125_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000121273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IncI1-type conjugal transfer protein TrbA"
                     /protein_id="HAY8870198.1"
                     /translation="MSYNRQPVAEDPMQIWGAVGVLLILLLFVIWLFLPEVVYASCLI
                     LHTLWGLVDWGPFHNYAAPRYNLLAMTGNNAANISYSQWINVMEQTIGILWMYLLPVT
                     LWCLWEWYQHPGQSRFTRRPVDITRLPHIFASLSPAIAPVLADGDPEKLFHGGKRPER
                     RVALTPEAFVEQHALITNMQLDVAAARRCFMAQLGKPLTSWKDMAPHEKALFAIFGLQ
                     YFLDDRKAALKLMDTLNLSCRIKSKRDSGKFCTPVYSLAKSAFQRVIKSNGAQQWLKQ
                     HRYVRSGLVWLYAHDLRLTPPNWIWLKGVDRTLFYALHRANTTKGFIEGAGVVAVARA
                     EAEAMRFGLPCPEPCVDEAVEGLRRDMLSLGLIWDEPQPDRDRKRRILTNWSLTDDIL
                     PRTPATDNEF"
     gene            18181..19251
                     /gene="trbB"
                     /locus_tag="JN125_000297"
     CDS             18181..19251
                     /gene="trbB"
                     /locus_tag="JN125_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000151583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IncI1-type conjugal transfer protein TrbB"
                     /protein_id="HAY8870199.1"
                     /translation="MTIEYFATRIAKHISVQAIWPDGRTEIIAVLPRDALSGLVTRNN
                     QLIHIAFDAMGTRNRETVLIDNQEHNADQILTAIDSCLRLEYLMERRFSRTPLFRGII
                     ASVVLFVMATIGFSLFRYVDRVFWDDTTPEAVQTAGEPRLLPPHLNHTVPLNEGIQLP
                     VPPKKDVQVPEKTITSKNPEAAAARHNLATVLKRNADRGMFTINLSSGHERTLFAFLD
                     PACPNCRLLEPALKRLASDFNVVIYPVSVIGGEESTDRVAPLLCEKDAQKRAAGWHRL
                     YSADNGMMTPSEETTPADETCLKAARAAIDVNNVAFRKFGFAGTPWVLSDTGWHLPTG
                     ILQETGTLNLFLKTTDSESGHE"
     gene            19244..21535
                     /locus_tag="JN125_000298"
     CDS             19244..21535
                     /locus_tag="JN125_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001289278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbC"
                     /protein_id="HAY8870200.1"
                     /translation="MSEHRVNPELLHRTAWGNPVWNALQSLNIYGFCLVASLVASFIW
                     PLALPACLLFTLITMLVFSLQRWRCPLRMPMTLECADPSQDRMIKRSLFSFWPTLFQY
                     EVILESPASGIFYVGYQRVRDIGRELWLSMDDLTRHIMFFATTGGGKTETIFAWAINP
                     LCWARGFTLVDGKAQNDTARTIWYLARRFGREDDVEVINFMNGGKSRSEIILSGEKTR
                     PQSNTWNPFCYSTEAFTAETMQSMLPQNVQGGEWQSRAIAMNKALVFGTKFWCVREGK
                     TMSLQMLREHMTLEGMAKLYCRGLDDQWPEEAIAPLRNYLQDVPGFDLSLVRTPSAWT
                     EEPRKQHAYLSGQFSETFSTFTEAFGDIFAEDSGDIDIRDSIHSDRILMVMIPALDTS
                     AHTTSALGRMFITQKSMILARDLGYRLEGTDSDALEVKKYKGRFPYLCFLDEVGAYYT
                     DRIAVEATQVRSLDFALILTAQDQERIEGQTTATNTATLMQNTGTKFAGRIVSEGSTA
                     RTLKSAAGEEARARMNNLQRQDGIFGESWIDSPQISILMESKINVQELIELHPGEFFS
                     IFRGETVPSASFFIPDDEKSCSSDPVVINRYISVDAPRLDRLRRLVPRTTQRRIPSPE
                     NVSAIIGVLTAKPSRKRRKIRTEPHTIVDTFQQRIAGRQAAMAMLEEYDTDINARESA
                     LWETAVNTLKTTTREERRIRYITLNRPELPETKEENQISVRAERAGINLLTLPQDNNH
                     PTGRPVNGFHHKKNNRPDWDGMY"
     gene            complement(21572..24271)
                     /gene="nikB"
                     /locus_tag="JN125_000299"
     CDS             complement(21572..24271)
                     /gene="nikB"
                     /locus_tag="JN125_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001387486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IncI1-type relaxase NikB"
                     /protein_id="HAY8870201.1"
                     /translation="MNAVIPKKRRDGKSSFEDLVSYVSVRDDMTDEELDLSSSSQAEQ
                     PHRNRFSRLVDYATRLRNESFVALVDVMKDGCEWVNFYGVTCFHNCTSLETAAADMEY
                     IAQQAHYAKDNTDPVFHYILSWQAHESPRPEQIYDSVRHTLKSLGLGEHQYVSAVHTD
                     TDNLHVHVAVNRVHPVTGYLNCLSWSQEKLSRACRELELKHGFAPDNGCWVHAPGNRI
                     VRKTAVERDRQNAWTRGKKQTFREYVAQTAVAGLRSEPVHDWLSLHRRLAEDGLYLSQ
                     MDGKFLVMDGWDRNRGGVQLDSFGPSWCAEKLMKKMGDYTPVPKDIFSQVEAPGRYNP
                     DFIAADVRPEKIAETESLQQYACRHLGERLPEMAREGRLENCQAIHRTLAEAGLWMRV
                     QHGHLVICDGYDHNQTPVRADSVWSLLTLDNVNQLDGGWQPVPTDIFRQVTPTERFRG
                     RRMESCPATDKEWHRMRTGTGPQGAIKRELFSDKESLWGYSISHCSPQIEEMITQGEF
                     TWQRCHELFAQQGLMLQKQHHGLVVVDAFNHEQTPVKASSIHPDLTLGRAEPQAGPFV
                     SAPADLFDRVQPESRYNPELAVSDRYGVSSKRDPMLRRQRREARAEARADLRARYLAW
                     REQWRKPDLRYGERCREIHQACRLRKSHIRAQYDDPALRKLHYHIAEVQRMQALIRLK
                     EDIRDERQKLIADGKWYPPSYRQWVEIQAAQGDRAAVSQLRGWDYRDRRKDRSRTTTT
                     DRCVVLCEPGGTPVYGNTGDLEARLQKNGSVRFRDRRTGEFVCTDYGDRVVFRNHHDR
                     NALADKLDLIAPVLFGRDPRMGFEPEGNDKQFNQVFAEMVAWHNVTGRTGHEDYRITR
                     PDVDHHREGSERYYRDYIAANSNDDASLPPPEQDKRWEPPSPG"
     gene            complement(24282..24614)
                     /gene="nikA"
                     /locus_tag="JN125_000300"
     CDS             complement(24282..24614)
                     /gene="nikA"
                     /locus_tag="JN125_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001283947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IncI1-type relaxosome accessory protein NikA"
                     /protein_id="HAY8870202.1"
                     /translation="MSDSAVRKKSEVRQKTVVRTLRFSPVEDETIRKKAEDSGLTVSA
                     YIRNAALNKRINSRTDDAFLKELMRLGRMQKHLFVQGKRTGDKEYAEVLVAITELTNT
                     LRKQLMEG"
     gene            24848..25183
                     /locus_tag="JN125_000301"
     CDS             24848..25183
                     /locus_tag="JN125_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000157082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein MobC"
                     /protein_id="HAY8870203.1"
                     /translation="MASKKFYSDDDIQLAKAALSELPDLTAQRKTLRDFLDAIRDDII
                     VLVRTKGYTLADVRDTLKNAGYEVGEKALRDIIREAESKKPSRRSSSKTAPKKTDSGR
                     KDGIDMNNN"
     gene            complement(25270..26118)
                     /locus_tag="JN125_000302"
     CDS             complement(25270..26118)
                     /locus_tag="JN125_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001401764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4942 domain-containing protein"
                     /protein_id="HAY8870204.1"
                     /translation="MNQTLPTADLNTAGTTDVIPSVAIDRIIAQRNEGIALFMQAMEC
                     LATARRILLDASGDIFLYGFEDCVTDSVRRMDKPEEAKRNITRLADRKIWDRLMTDTG
                     MYTFMSSCQRDEWNSQLMSDTCPEITLDNVLATFRHLNASKMQTFEQGLIDVYRKLSW
                     DYRTNNPCRLGKKIIIENLLYRWSNGRVTLDCSGREALDDLVRPFYLLEGRNVPDFRN
                     SIGAQYGEFLGNGDNVGKLLEGEYFTVRGYQKGTVHIVFKRSDLVEKLNDIIARHYPG
                     ALPPRV"
     gene            26698..26949
                     /locus_tag="JN125_000303"
     CDS             26698..26949
                     /locus_tag="JN125_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003980153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAY8870205.1"
                     /translation="MTGWELRIWRKSMLWSREKAAREFGVTQRTWHAWENAEQVDVTV
                     WRTTQALSVRDLLPHMQGMRKADIIRRLENELGETAEDV"
     gene            complement(26980..27186)
                     /locus_tag="JN125_000304"
     CDS             complement(26980..27186)
                     /locus_tag="JN125_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000150315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870206.1"
                     /translation="MTIAERLIQKGFDEGFDEGFKEGFKKGALEVAREAACRLRDMGW
                     TPERIQEAAGLSGEELKKLFPDEQ"
     gene            complement(27248..28162)
                     /locus_tag="JN125_000305"
     CDS             complement(27248..28162)
                     /locus_tag="JN125_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000038335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rpn family recombination-promoting
                     nuclease/putative transposase"
                     /protein_id="HAY8870207.1"
                     /translation="MSKKKNTTTPTPHDAAFRSFLANPDVARDFLELHLPAEYRQLCD
                     LSTLKLEPATFVEPDLHQYASDILWSVKTTGSKDGYVYTLIEHQSTENLYMPFRMLRY
                     SVAAMQRHLEQHKTLPLVIPVLFYHGERSPYPYSMNWLDCFENPALAAKIYTKPFPLV
                     DITVVDDNEIMNHRRMAALTLLMKHIRHRDMMELLDKLPQVMVEISDEQVRVLIHYIV
                     NAGDSVSPEFMRALAERLPQHEDKLMTIAERLEQKGRQEGRMEGRMEGALEKALAIAC
                     QLQKMGMTPEQIKQATGLSDDELKKIIH"
     gene            complement(28159..28548)
                     /locus_tag="JN125_000306"
     CDS             complement(28159..28548)
                     /locus_tag="JN125_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000833766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein CbiX"
                     /protein_id="HAY8870208.1"
                     /translation="MKSCFDTDKAFHMSFDEVTFNADRIRSKLELLSEELMPRCGLVY
                     ELYQRRLSAAIDNFVATLPTEQHLLVLELAREEFDYLSAEEIAEEIRRDSERGYCCHG
                     FERNCCPLGCGDLGDDCCDAADLMEEP"
     gene            complement(28725..28991)
                     /locus_tag="JN125_000307"
     CDS             complement(28725..28991)
                     /locus_tag="JN125_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001247860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870209.1"
                     /translation="MKPSIIFATAEYVKRLREECLRENKPLHRHTRFRRQELAQDEIN
                     PDVLAMSGHIARRCSEQKRVRIPAMKVSEWGHLLRALEIERVCH"
     gene            complement(29085..29519)
                     /locus_tag="JN125_000308"
     CDS             complement(29085..29519)
                     /locus_tag="JN125_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000218847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="post-segregation killing protein PndC"
                     /protein_id="HAY8870210.1"
                     /translation="MTVSSTISVFCRDGVFRTVYCHLHGEPTWNGRILHTHYATGQQA
                     EALVEHGDIRCLGPRCDKPAGHTLQNPVDGVTAYYGRDSGFRMDSEAREYRSFMEAIA
                     TESTEEVRFHYVFIDGYWKVMYRTPEGWKMKALALALRRCPK"
     gene            complement(30248..30748)
                     /locus_tag="JN125_000309"
     CDS             complement(30248..30748)
                     /locus_tag="JN125_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000117633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antirestriction protein ArdA"
                     /protein_id="HAY8870211.1"
                     /translation="MSVVAPAVYVGTWHKYNCGSIAGRWFDLTTFDDERDFFAACRAL
                     HQDEADPELMFQDYEGFPGNMASECHINWAWVEGFRLARDEGCEEAYRLWVEDTGETD
                     FDTFRDAWWGEADSEEAFAVEFASDTGLLADVPETVALYFDYEAYARDLFLDSFTFID
                     GHVFRR"
     gene            complement(30669..31024)
                     /locus_tag="JN125_000310"
                     /pseudo
     CDS             complement(30669..31024)
                     /locus_tag="JN125_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001332439.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1472 domain-containing protein"
     gene            complement(31210..31806)
                     /locus_tag="JN125_000311"
     CDS             complement(31210..31806)
                     /locus_tag="JN125_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000978013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870212.1"
                     /translation="MMKSDEKYQVPAWMRPLLPLLCNTGGNDPEELLNDTETTASANV
                     VRYVLIVAVRSQVDLLQLLYRKGLLRTEIPGGFSPEEAQALLDNLVRSHISKALSGER
                     MAARDRNADLAWIGQQLVDAAWFVRATLEAHGMSVGNESPPAPPETMPDIQTRELVML
                     IKRLASSLKAVKPDSCVVREAQDWLRDRKLVDITDILR"
     gene            complement(31803..32522)
                     /locus_tag="JN125_000312"
     CDS             complement(31803..32522)
                     /locus_tag="JN125_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001723065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid SOS inhibition protein A"
                     /protein_id="HAY8870213.1"
                     /translation="MSARSRALIPLSAEQQAAMQAVAVTEQRRRQGRTLSAWPYATAF
                     FRCLNGSRRISLTDLRFFAPALTKEEFHGNRLLWLAAVDKLIESFGEVCVLPLPSDAG
                     HRLFPSVPFREGERRRQKTTLTEQKYSRQREREAERRELEYQTCFAQAQIDLAFHTPA
                     TVGSWLSRWSGVVEEHDLETIFWGWCGRFPSLSSFDRFFWQEEPLWRLIFEAGEAGRG
                     APVQVRALEQWMIPNKLENVI"
     gene            complement(32519..32953)
                     /gene="psiB"
                     /locus_tag="JN125_000313"
     CDS             complement(32519..32953)
                     /gene="psiB"
                     /locus_tag="JN125_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000845897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugation system SOS inhibitor PsiB"
                     /protein_id="HAY8870214.1"
                     /translation="MNTELTLNALQSMNAQEYEEIRAAGSDMRRNLTHEVMRKVDAPA
                     NWMMNGEYGSEFGGFFPVQVRFTPAHERFHLALCSPGDVSQLWMLVLVNGGGQPFAVV
                     QVQHIFTPAAISHTLALAATLDAQGYSVNDIIHILMAEGGQA"
     gene            complement(33008..34966)
                     /locus_tag="JN125_000314"
     CDS             complement(33008..34966)
                     /locus_tag="JN125_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000117326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HAY8870215.1"
                     /translation="MPVTKCEPETTRKASRKSVKTQETVLSALLAQTEEVSVPLASLI
                     KSPLNVRTVPYSAESVSELAESIKGVGLLQNLVVHTLPGDRYGVAAGGRRLAALNMLA
                     ERGIIPADWPVRVKVIPQELATAASMTENGHRRDMHPAEQIAGFRAMAQEGKTPAQIG
                     DLLGYSPRHVQRMLKLADLAPVILDALAEDRITTEHCQALALENDTTRQVQVFEAACQ
                     SGWGGKPEVQTIRRLVTESEVAVAGNSKFRFVGADAFSPDELRTDLFSDDGDGYVDRV
                     ALDAALLEKLQAVAEHLREAEGWEWCAGRMEPVGECREDAGTYRCLPEPEAVLTEAEE
                     ERLNELMTRYDALENQCEESDLLEAEMKLIDCMAKVRAWTPEMRAGSGVVVSWRYGNV
                     CVQRGVQLRSEDDATDDADRTEQVQEKASVEEISLPLLTKMSSERTLAVQAALMQQPD
                     KSLALLAWTLCLNVFDSGAYSKPAQISLECKHYSLTSDAPSGKEGAAFLALMAEKARL
                     AALLPEGWSRDMTTFLSLSQEVLLSLLSFCTACSLNGVQTRECGRTSRSPLDSLESAI
                     GFHMRDWWQPTKANFFGHLKKPQIIAALNDAGLSGAARDAEKMKKGDAAEHAEFHMKD
                     NRWVPGWMCSPRPQTDATERADNLADAA"
     gene            complement(35025..35258)
                     /locus_tag="JN125_000315"
     CDS             complement(35025..35258)
                     /locus_tag="JN125_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000005972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF905 domain-containing protein"
                     /protein_id="HAY8870216.1"
                     /translation="MSEYFRILQGLPDGSFTREQAEAVAAQYRNVFIEDDQGTHFRLV
                     VRQDGTLIWRSWNFEDCAGYWMNQYIRDFGILK"
     gene            complement(35316..35801)
                     /locus_tag="JN125_000316"
     CDS             complement(35316..35801)
                     /locus_tag="JN125_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000741240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HAY8870217.1"
                     /translation="MGNDPEVRYIPNGGAVANLQVATSESWRDKQTGEMREQTEWHRV
                     VLFGKLAEVAGEYLRKGAQVYIEGQLRTRSWEDNGITRYVTEILVKTTGTVQMLGRAP
                     QQNAQAQPKPQQNGQPQSADATKKGGAKTKGRGRKAAQPEPQPQPPEGEDYGFSDDIP
                     F"
     gene            complement(35951..37852)
                     /gene="ltrA"
                     /locus_tag="JN125_000317"
     CDS             complement(35951..37852)
                     /gene="ltrA"
                     /locus_tag="JN125_000317"
                     /EC_number="2.7.7.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000936286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="HAY8870218.1"
                     /translation="MLPDELEKRLDGIEDASKKGYPVRNLYKIACEPGLWLQAYVNIR
                     ANAGALTQGVSTDTIDGFSIERAEKLAKTLRSREYVAKPVRRVQIPKKDGKTRPLGIP
                     GGDDKLAQEVARIILERVYEPVFSEHSHGFRPKRSCETALRSIRPVWNGVKWIVDVDI
                     KGFFDNIPHKLLLNTLAEKIKDKNFLKLIEQWLKAGYVDNWKYHRSYSGTPQGGIISP
                     LLANIYLDKLDRFVEQNLIPAYTSGTKRRANPDMNRLAHKIHKLRKKVDGMATDSESE
                     KEAIKKEIERLLEEKRSIPSQVMNDPNFRRMYYVRYADDFVIGVIGSKKDAEHISRQV
                     RNFITTSLGLEVNEAKTRIRHISEGVNFLGYEIRQADAKKLLKQKMQGRHALRRSTTG
                     IVQLFVPDNIAAKFCHQKKYGCYENVKAVHRSSLQNLSEAEIVLTFNAEMRGLANYYS
                     LALDMKYKLSKLYFIWQISLFKTLANKRRSSVNKVAKSLRQNNGDLAITVQAKNGSRK
                     IEVFKLKHVNRNRTTIVDTEPRTAHITTRTTEIMRRLGARICEYCAKTGRCEVHHVRK
                     LKDLKKGRKAGYKPSLWQLMMIARRRKTMILCASCHDKLHSGKLPDLRQEKGRILLQP
                     PVSSGDSAK"
     gene            39671..41338
                     /gene="ltrA"
                     /locus_tag="JN125_000318"
     CDS             39671..41338
                     /gene="ltrA"
                     /locus_tag="JN125_000318"
                     /EC_number="2.7.7.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001748652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="HAY8870219.1"
                     /translation="MNTHISVSTIPHPTGWHTIDWKACHARVRKLQLRIAKATRQQQW
                     RQVRELQRILTRSFSGKAVAVRRVTENTGKRTPGIDGKIWHTPKEKWEGICSLNLCGY
                     RPQPLRRIHIPKSNGKTRPLGIPTMRDRAMQALWLLALEPVSETTADHNSYGFRPMRS
                     THDAIESIFLRMSQKVSPKWILEGDIKGCFDNISHDWLLSHIPMDRRLLKKWLKAGYM
                     ERGVFNHTNSGTPQGGIISPVLANMALDGLEKELMQTFRKSGYHSAKHQVNYVRYADD
                     FICSGSSRELLENEVRPLIAAFMRERGLELSEEKTAITHIDKGFDFLGQNVRKYNGKM
                     LIKPSKKNLKNFLCKVREIIKRNPTLPAWKLIGQLNPVIRGWATYHRHVVAKETFNYV
                     DTQIWRAIWRWCVRRHPRKGLRWIAGRYFSFEGRRWIFKAITPEGKILTLFRAMETPI
                     KRHIKIKGEATPYTPGMEIYFERRLDLIWKGKSKKMKTVVQLWKRQGKHCPQCGQPIT
                     NQTGWNIHHRIRKVMGGSDELTNLELLHPNCHRQLHSREAGAHRKHL"
     gene            complement(41616..41807)
                     /locus_tag="JN125_000319"
     CDS             complement(41616..41807)
                     /locus_tag="JN125_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016238862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870220.1"
                     /translation="MNISTETREILRNYKAVINARRREMGQKPLTTAQIVDEICDFVA
                     NQQAVFLGGHYILQGSRNR"
     gene            complement(41804..42226)
                     /locus_tag="JN125_000320"
     CDS             complement(41804..42226)
                     /locus_tag="JN125_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1380 domain-containing protein"
                     /protein_id="HAY8870221.1"
                     /translation="MYCTVKEIIREVLDTDVPDSECVFAVVLTRGDVRHIAQDWSLTD
                     DELETVMQRLDDAFEHGADVSVVHDVVRELMEEKRASRQVTVPAVMLEKVMALAGSEM
                     KRLYAVGSDNGGDGDAFVREEREAMDVVLQALDGEHMS"
     gene            complement(42273..42698)
                     /locus_tag="JN125_000321"
     CDS             complement(42273..42698)
                     /locus_tag="JN125_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001198918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antirestriction protein"
                     /protein_id="HAY8870222.1"
                     /translation="MQYAKPVTLNVEECDRLSFLPYLFGNDFLYAEAYVYALAQKMMP
                     EYQGGFWHFIRLPDGGGYMMPDGDRFHMVNGANWFDRTVSADAAGIILTSLVINRQLW
                     LYHDSGDAGLTQLYRMRDAQLWRHIEFHPECNAIYAALD"
     gene            complement(42671..43239)
                     /locus_tag="JN125_000322"
                     /pseudo
     CDS             complement(42671..43239)
                     /locus_tag="JN125_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052648.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1472 domain-containing protein"
     gene            complement(43663..43888)
                     /locus_tag="JN125_000323"
                     /pseudo
     CDS             complement(43663..43888)
                     /locus_tag="JN125_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001494698.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(43934..44368)
                     /locus_tag="JN125_000324"
     CDS             complement(43934..44368)
                     /locus_tag="JN125_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001562898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1380 domain-containing protein"
                     /protein_id="HAY8870223.1"
                     /translation="MYGTCETLCRALAAKYPGDMPLMLVIWSPEEIQALADGMDISLS
                     DHEIRTVLARLEDIPEDQRTESGISSGVAMEIINNVSENRQVTVPAELLASLIQTAEQ
                     ALWKREWAARDHGLAVPECVTRRQAVINQARTLLKNNRHEND"
     gene            complement(44382..44603)
                     /locus_tag="JN125_000325"
     CDS             complement(44382..44603)
                     /locus_tag="JN125_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870224.1"
                     /translation="MNYAGHEKLRAEVAEVANAMCDLRTTMNEMEQRYSFNADTLPER
                     LVRQTLFRANRLLMEAYTEILELDACFKD"
     gene            complement(44604..45287)
                     /locus_tag="JN125_000326"
     CDS             complement(44604..45287)
                     /locus_tag="JN125_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858331.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methylase"
                     /protein_id="HAY8870225.1"
                     /translation="MSRFVLGNCIDVMARIPDNAIDFILTDPPYLVGFRDRSGRTIAG
                     DKTDEWLQPACNEMYRVLKKDALMVSFYGWHRIDRFMAAWKRAGFSVAGHLVFTKNYT
                     SKSAYVAYRHECAYILAKGSPARPRNPLPDVLGWKYSGNRHHPTEKPVTSLQPLIESF
                     THPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAAVQRAMQQGAAN
                     DDWFMPEAA"
     gene            complement(45364..45668)
                     /locus_tag="JN125_000327"
                     /pseudo
     CDS             complement(45364..45668)
                     /locus_tag="JN125_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052644.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(45672..46643)
                     /locus_tag="JN125_000328"
     CDS             complement(45672..46643)
                     /locus_tag="JN125_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1281 domain-containing protein"
                     /protein_id="HAY8870226.1"
                     /translation="MRHGLMEAACERRIPMPNWCSNRMYFSGEPAQIAEIKRLASGAV
                     TPFYRRATNEGIQLFLAGSAGLLQTTEDVQFEPCPGLTAAGRGVVSPENIAFTRWLTH
                     LQNGVLLDEQNCLMLHELWLQSGTGQRRWEGLPDDVRDTITALFTAKRGDWCGFWSNE
                     DVSVWWNRLCDNVLPEKTMPFDLLTVLPTRLDIEVNGFNGGVLNGVPSAYHWYTERYG
                     VKWPCGYDLNISSQGENFIQVDFDTPWCQPESDVVAELSRLFGCTLEHWYAEQGCDFC
                     GWQLYERGELVDVLWGELEWSSPTDDDELPEVTGPAWIVDNVAHYGG"
     gene            46993..47241
                     /locus_tag="JN125_000329"
     CDS             46993..47241
                     /locus_tag="JN125_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001697964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein ImpC"
                     /protein_id="HAY8870227.1"
                     /translation="MIRIEILFDRQSTKNLKSGTLQALQNEIEQRLKPHYPEIWLRID
                     QGSAPSVSVTGARNDKDKERILSLLEEIWQDDSWLPAA"
     gene            47238..47675
                     /gene="umuD"
                     /locus_tag="JN125_000330"
     CDS             47238..47675
                     /gene="umuD"
                     /locus_tag="JN125_000330"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001536590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translesion error-prone DNA polymerase V
                     autoproteolytic subunit"
                     /protein_id="HAY8870228.1"
                     /translation="MSTVYHRPADPSGDDSYVRPLFADRCQAGFPSPATDYAEQELDL
                     NSYCISRPAATFFLRASGESMNQAGVQNGDLLVVDRAEKPQHGDIVIAEIDGEFTVKR
                     LLLRPRPALEPVSDSPEFRTLYPENICIFGVVTHVIHRTRELR"
     gene            47675..48946
                     /locus_tag="JN125_000331"
     CDS             47675..48946
                     /locus_tag="JN125_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001566943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Y-family DNA polymerase"
                     /protein_id="HAY8870229.1"
                     /translation="MFALADINSFYASCEKVFRPDLRNEPVIVLSNNDGCVIARSPEA
                     KALGIRMGQPWFQVRQMRLEKKIHVFSSNYALYHSMSQRVMAVLESLSPAVEPYSIDE
                     MFIDLRGINHCISPEIFGHQLREQVKSWTGLTMGVGIAPTKTLAKSAQWATKQWPQFS
                     GVVALTAENRNRTLKLLGLQPVGEVWGVGRRLTEKLNALGINTALQLAQANTAFIRKN
                     FSVILERTVRELNGESCISLEEAPPAKQQIVCSRSFGERITDKDAMHQAVVQYAERAA
                     EKLRGERQYCRQVTTFVRTSPFAVKEPCYSNAAVEKLPLPTQDSRDIIAAACRALNHV
                     WREGYRYMKAGVMLADFTPSGIAQPGLFDEIQPRKNSEKLMKTLDELNQSGKGKVWFA
                     GRGTAPEWQMKREMLSPAYTTRWTDLPVAQL"
     gene            49142..49768
                     /locus_tag="JN125_000332"
     CDS             49142..49768
                     /locus_tag="JN125_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010260829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family plasmid-partitioning AAA ATPase"
                     /protein_id="HAY8870230.1"
                     /translation="MIIVLGSQKGGVGKSTLAVSIAAYLMSLGNRVIIVDADDQKSVL
                     TWYNNRPEDLPHIPVTGATGNIKAMLKEHEKSYDFVIADCAGRDSAEMRSGLMAADVF
                     ISPLRPSQMDLDVVPHTCSVFTAAKDFNEDVRGYLVLNMTPTNMFVNEANEAAEVLKD
                     YPEMHLANSRVCDRKAHRDAWAESMTIFETQNDKAQQEIEALVKEVIL"
     gene            49888..50067
                     /locus_tag="JN125_000333"
     CDS             49888..50067
                     /locus_tag="JN125_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001485364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Par-like protein"
                     /protein_id="HAY8870231.1"
                     /translation="MSISFFEENLKDIDALITAEMVSGKGRVNRSDVVRAAVEALKTL
                     SKTEVSRLIAEVKQR"
     gene            complement(50336..51196)
                     /locus_tag="JN125_000334"
     CDS             complement(50336..51196)
                     /locus_tag="JN125_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032489893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class A broad-spectrum beta-lactamase TEM-1"
                     /protein_id="HAY8870232.1"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGY
                     IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE
                     YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL
                     DRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPL
                     LRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIA
                     EIGASLIKHW"
     gene            complement(51379..>51640)
                     /locus_tag="JN125_000335"
     CDS             complement(51379..>51640)
                     /locus_tag="JN125_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HAY8870233.1"
                     /translation="DGDMGQMVVTILSAVAQAERRRILERTNEGRQEAKLKGIKFGRR
                     RTVDRNVVLTLHQKGTGATEIAHQLSIARSTVYKILEDERAS"
BASE COUNT        13064 a        13571 c        12879 g        12126 t
ORIGIN      
        1 tatgcagcga actgcatatt gccccgtcaa cgtattacca ttgtcagcaa cagcgacatc
       61 atccggataa acgcagtgcc cgtgcgcagc acgatgactg gctgaagaga gagatacagc
      121 gcgtatacga tgaaaatcat caggtgtacg gtgtgcgtaa agtctggcgt cagttgttac
      181 gggaaggaat cagggtggcc agatgtacag tggcgcgcct catggcggtt atgggacttg
      241 ccggtgttct ccggggtaaa aaggtccgca ctaccgtcag ccggaaaacc gttgccacag
      301 gtgaccgcgt aaaccgtcag ttcgtggcag aacgtcctga ccagctgtgg gtggctgatt
      361 ttacttacgt cagcacatgg cagggcttcg tctatgtggc gtttatcatt gatgtgtttg
      421 ctggatacat cgtggggtgg cgggtctcat cgtctatgga aacgacattc gtgctggatg
      481 cgctggagca ggcgttgtgg gcccgtcgtc cgtctggcac catccatcac agcgataaag
      541 gctctcagta tgtgtcactg gcctatacgg agcgactaaa agaagccgga ttactggcat
      601 caacagggag tacaggcgac tcgtatgaca acgcgatggc tgagagcatc aatggtcttt
      661 acaaagcgga ggtaatacac cgtaagagct ggaaaaaccg tgcagaagtg gaactggcca
      721 cactaacgtg ggtggactgg tataacaatc gacgattgct gggaaggctg ggccatactc
      781 ctccggcaga aacagaaaaa gcttattatg cttccatcgg aaacaatgat ctggcagcct
      841 gagttcacag ataaaacact ctccaggaaa cccggggcgg ttcatactga ctttctctgt
      901 gaatggccag tccgttcacg tgacaccaga actggagtaa tcatgagtgc tgaacaggat
      961 gccggtaaat ccggaaagaa actggctgcc ctgcttggac tgggcagcat catcttattt
     1021 ggcggcggct atatcgcgtt ttccaaacta tcagggagta acagcgatat gcagtcagcc
     1081 gtgaacatta acagtgcagc aagcggcgga acgcgcagcg ttaccgaaac gcctcactat
     1141 cgtgaactgt taagagcgga taatgaacga ggggccgcag ctgcagcccg caataatcag
     1201 acgttcattg ccagtcttcc acaggggctt gatattccgg acactccgga aaagcaacaa
     1261 cagcctgcag caaaaccgga aaactatgct catcgccagg cttccggcac accacaggag
     1321 gatcgagcag ccagtgaaaa acgtatggag cggctgcaaa agctgattgt aagaataaaa
     1381 gatcagcatc ctgccggtag tacaccaacc atagcaacga ctatgtggaa taaatctccg
     1441 gcagaaacaa cagggcagaa tggtacgcag caattcgcat tacagaatgc cagcctgtcc
     1501 acgcctgtag cagaaaaagg gatacaactg atacctgctc tgacccgtat accggcatat
     1561 attgatactg cagtggattc tgataacccg tcatccaagg ttatcgcaac cattcccgct
     1621 ggcccctggg caggggcaac gctgttcagt ccgggagtca aactggtggg taacggcgtg
     1681 gagatccatt tcgaccggat gagctggaac ggcatggacc ttaaggtcaa tgcatatgct
     1741 caacgggaag acaacctgat gtcatccgtg gccagcaatg tgaatacacg ctggtttaaa
     1801 catatcattc tgccgtcagt gttaggaggt gtgggcagta ttggcacact ttataaagat
     1861 gccaacacgc aggttattca gggtaactat ggcacggtta ccggacgcgt gggaatgccc
     1921 agtggtgaag ctgttgcggg cgttattgcc ggtggtatgg cggaaagagg aagtcagata
     1981 ttaacccgcc aggcagaaag tgagccctat aaacaggtag aagtgtatca gcatgaagtc
     2041 gtatcaattc tgtttgttga cccggtaatg acaaacgacg ccaggtcatc ttccctttcc
     2101 agtggcattt ccccttcagt taatcgtaca tcacaggcgg aacaacgctc gcaggcacga
     2161 atgcagacag ccatggagca aagaaaagct gtgatgcaac gtcggtatga tgaacaaccg
     2221 gagacaccat aatgaaacct gaaacagaaa tagatgaaac cggcagcttc ggtgaacccg
     2281 aagagaaacc cgcccccttc tggaaacgtt ccgtctgggg gatatctgta gcaacatggg
     2341 ggctatgtgc agtcgtgttg ctcgcagcca tatggtatct gttcctgaga gcgccatcgg
     2401 aaacaggcat gcctccgttt aatgatgcgg atgctggcgt acagacctgg caaaccacac
     2461 aagaatcatc accttctgtt cagtccactg agactatgac tgtccggaca ggagaagata
     2521 tgagccagct tgcccgggat gtaaaaacag agctggataa ccgcgatgaa aaaattcagg
     2581 caacactgaa tatgcttcac gacagcatta acaagctggg cgaagctata aaaaaggatg
     2641 aagaatacgc acaggaaacg cgccgtcagc tggatgatat ccggagccgc ctgaacggaa
     2701 taatgacaca gaaaagcgtc actgaatcct cttccacacc gcatccagca aagaaaaaaa
     2761 cgtcgtctgt tcttaacgga atgaaaatca tgtcgatgga aactggtatg gcctggattc
     2821 gctggcaggg tagtacctgg gctgtcagag aaggtcagac gctgggcaat gtggtgatcc
     2881 agcggattga tccgactacc cggaccatca tcaccagtgc agggacgtta cgctgatgaa
     2941 catggatgcc ctgaccgcca ttgagaactt tgccagcagt attttcagtg ccggaatgga
     3001 tttcctgttt acctggggag aattcatcgg ggtgatcagc atgattaccc tgtttgcccg
     3061 cgcccgttca gccggtccgg taaaaatgtc tcccggaaaa tttattgcgg ggatgttaac
     3121 cagctgcatg ctcgtatcac tcccggcaat gattaacgcc ggaggcgtac aaatgggatt
     3181 cagggctgac tcatttggcc cgattgcata tgtacaacct cagacgtttg gcgctgctgc
     3241 tggcgcagca aatgcagttc tgtcgctggc caagctggcc ggtgtgggat ttgtcatgaa
     3301 cgggatatcc atctggcgca aggccggact cgatggacat accgcactga gtgccagtga
     3361 atccgtcagt aagggaaacg tcaaatttat tgccggcgtc ctgctggtct ttatcgatcg
     3421 tgtcctcaat gccctgctgg caagcattgg aatcgtcttc tgattttttt caccttcata
     3481 taaaccactg atatatccat ttaaggagaa actatgtcac gtattcgtgt cgtggcggcc
     3541 cgtctgtacg ccgcatttat ccatgcacaa ctgtttgtaa tgtcatgccg gagcaaactg
     3601 actaagtacc tgctgctcat tcccatgatg ttgctgccca aagccgttct tgccgatgga
     3661 gatcttgccg atatggttcg caatgttggt gaaggtgcta aaacagcaca gtcatcatca
     3721 atcactattg cgcagttcat cggcgtaatt ctgtttctcg ggggcctgat tggcctgaaa
     3781 aaagttggga aacaaggggg gatgggactg gctggttgca ttgtatctat cgtcattggg
     3841 gcggtacttg tcgccggacc tgaaatgatg agtcgcagcc agaaacagtt ggggatttcc
     3901 tcaatttcca ttggctaatc ttgtccaggg cactggcatt tatccggtgc ccttcctatt
     3961 cggcaataca aggaggcaca tatgtctgcc tggagcccgg agcacataac gttacgacga
     4021 acagaaaacg gcaatgtgat tgcccacgac agtcgggacg atcaggaatt catttttgca
     4081 gaatgctgtt ccgatgaaat cgcaaacatc attctggaag ccgtgaaatg ttacaccagt
     4141 acggagcctg ctcatgcaac acagcattaa agacttgtgg ttgtatccct ttccagaaat
     4201 tgatgtggtt catactcagg aggcactgtt accggaaccg gaattaacaa cgcccggtcg
     4261 atgtatctgc tgccggcaaa acgtcaggca ccgtttcaga ctggatgact catggccact
     4321 cagacagctt accgacacaa tcagtaacac acgagttcgt cttaataagg ccacagaaca
     4381 tctggttaag ttaatcaggc gtggtgaacc agtcgcaacc ggcaaaaagg aaaagtacaa
     4441 cacggcagta aaagccgctg aacgggcgct tgagcatgcc cgtctgtctg ccagacgtct
     4501 ttcactccgc catgtacaga aagctgaaat caccagtaca gagccgttgt cagagaaaga
     4561 gcaggagctg tttcatgaag acggcccgcc ttacagctta tgtgctttct gccacgcctg
     4621 gcattcactg aatggttatg ccgcagcaca gggcgttatg gtgtggctac ccgaccttca
     4681 tccatccacg gtcgtggccc ttaaccgtcg ttcattacag gaagttttca gtaatgataa
     4741 gttccgggtc cggcgaggac gggaagcgct ctctgcactg atgcaaaaca gactggcggt
     4801 tgaggataaa ttccgaagtt tccgcccggc cgatttcgct gacgtttttc gtcgctaccc
     4861 cccttccggt cgttcgcctc tgcgtgaaaa aatgaacggt attgccctga ttctgacacc
     4921 agattcattc atcaaaaaag aatacgttga ttgatttttc ttcatgccac tccagcgcgg
     4981 ggtggcatta aaaaaatcaa actgcacaaa cctccctcct gtaagtccgg agttccctca
     5041 cctatgaaca taaaccgttt aatcttcact atcgaagact gtctgaacac gctatcccgt
     5101 ttctctgtcg caagcagttt tgttgagtat tgcgatttac gtactgtaat tggtctggac
     5161 agacaggatc gtgaacgtcg cccatggctg aattcgccct atattgcagc cacaaagcgt
     5221 ggagaatatc tctctgtctt tgaagtcagc ggtgctttca gggaaatgga tgaagcatcc
     5281 gaccagactg gctcaggttc actggaatcg ctgatcacca gcatgagtga cagcctgaat
     5341 acggcatata aaaacagcgg tcataaaatc agctgcgttt tcgagcgtga ccctgaaatg
     5401 gggaaagagg aaatcgaaga catggtcgcc ccacaaaaac gctcactggc taatacaggt
     5461 atccagttac aggatgtggt cgatgagaaa gtcacaacac tgtccccatg gctggtccgg
     5521 gagcgttgct ggctggcgat ctggagtgga cccgacctta tcagcaacag cgatcgcact
     5581 gcccatgatg agcttgtcag aagactggct gaacgggtac cgaaagcacg ctttgcccag
     5641 tccccctggc agtggacctt atctgcactg aaaatccgcc acgaagcttt tcttgataat
     5701 gtggaacagg cactgagaca ttcatctgat ggcctgattc tccggcttct ggatatacac
     5761 gaagtcgggc gtgaaatacg tcgtcagaca gaacggtaca gcacaccgcg taactggcaa
     5821 ccccacctgc ctgaagatgc ccagccagca ggatatcgct ggactgacga tgaatccgta
     5881 ctacatgctc cttcattgca tttgcagtta ttcaacacgc aggtgaccac acagggcaac
     5941 ctggttcagg cgggcggact ctggcacgga atggtatcga ttactttacc tccgcaaaat
     6001 ctgcagacgt ttaacgaact ggtccgtgcc gtcccccgcg cagtcccctg gcgcatcaga
     6061 atggatctga tgcccggcgg gatgaaggct cttaatctga agaaaacgct tctgacttac
     6121 agcagcttca tttctgccgt tcgtccaatg tatgaatccg ttatgaccct ggcggcaacg
     6181 gatgaaaaag aacctgtctg cataatgacc atcatggcct ccacgtgggg aaaaacacgt
     6241 gaaatatgcg cacgaaacca ggccattctg aaatcagcca ttgaaggctg gggcgtatgt
     6301 ggcaccacga caacatttgg cgatccccga cgcgcctggg tgaataccat tctcgcggca
     6361 tccggaggct ccggcccggt tcccctgtat cccccgttgt cacatgccat ctcgcttttc
     6421 ccgcttaaca gggcaggctc tgtctggcga ggcaaaggga atctgatgtt acatacagaa
     6481 gacggttccg catttgaggt tggtctggcg tcatcccaac aaaataaaca tacagaactg
     6541 gcaccaggcg atccgggact gggtaaatca gttctgatta atacgttgtc ggaaatacag
     6601 atatcatctg ctcagaaaaa cctgcccttc attgcctata tcgataaggg atacagtgct
     6661 cagggactgg ttcagcttat tcgcgacagt cttcctcagg aaagaaaaga cgaagctgtc
     6721 ggtattattc tgagcaatga tccggactac acccgtaacc tttttgacgt gatgtacggc
     6781 gctaaaaagc ctattacgcc ggaaaagaat ttcatgtcat cggtgctgtg tgctctctgt
     6841 gtcgataccg gtaccggtca accctgtaac cccggagaca cccgacaaat tatcaaccag
     6901 cttatcgagc tggcttttaa agagtacggt gaaaataatc cgcgacttta tcgcgcctca
     6961 acggaagaac tggtggattc agcactgcag gactcgggac tgtatgaaaa acatgatgca
     7021 gcctggtggg ccagatcaac ctggtttgaa gtccgggata tgctccacaa tgccgggtat
     7081 atcatggcgg ctcagcgggc acattatcag gcaatgcccc agcttcccga agtgtcctcg
     7141 atgctgggcc ataccagtct cagggatgtt ttcggtactg ttcagcgtga tggttcaaac
     7201 gagcttctgc tggactacat ccgccgcgcc ctggagcagg gacataacga ctaccccatg
     7261 atatccgggt atacccggtt tatgatcaac ccggaaaccc gggttatcgc tgtcgatctg
     7321 aataatgttg ccggtgacaa aacgcctgca ggcaggctta aaaccggcat catgtacctg
     7381 cttgcaggtc agatcgccgg tggtgacttc accctgccac aatacaggga tgaagtgtta
     7441 aagcagcttc cacgggaata ccatgaaatc gctcttaaac gtattaacca acttgatcag
     7501 gaggttaaga caaaagttta tgatgaactg cataacgccc ggggcattga cttcatctgg
     7561 gaaaatctgg atacccagga gcgtgagcaa cgcaagtttg ctatccgcac ggttctgagt
     7621 acgcagtatc tgagggacta cccggaaagc gttcttaagt cagcaaatac tctctggtta
     7681 ctgcgctaca aacccgaaga tatccccgta ctgagggata acttcaacgt gcctgaattt
     7741 atgctgaaac gcttcctgaa aatgccggaa ggcccggcac cagatggtag tggtgttcct
     7801 gttctgggag tattcagggt aaaaagtggc acgcttgcga gaatactcaa atttaccgtc
     7861 ggtccactgg agctatgggc gctgaactca tcgccaaaag acagtgccct gcgtaaaaca
     7921 ctgacaaata agttaggttc agttcgggca cgtaagattc tggccgaaaa cttccccaga
     7981 ggttctgcaa cgtcattaat tgagcaccgg gcgggccaac ataacagtga caatgttatt
     8041 gaagaactgg cctcggagct catccgaaaa cagggataca atctctgatg tgtacaattc
     8101 atatcacccc acgctgccgg agacctgcca gagggcaggt atttcttaaa aaacttgagg
     8161 taaaaggtga cagtttctca ttcactctgc cgtcacgtgt cttcaggtta catccggccc
     8221 ccaatcacag agtgatatac gcctcggatg ccagaacaca gggaaaggtc acaggcatgc
     8281 ggctgttgtt gccgtccagc acagatgagc tgataacaac ggcaatatgg caggtttctg
     8341 tcccggatga agcaccattc gacgttcagc atgtcatcca gtggatactc ccttcaccgc
     8401 tggcttcgct gatgtccgat gatacctggt tatggccatc cgttcccgga acgccggcac
     8461 tgagtgccgg tgactggcct gttatggata ctgacccttc caccttacgg cgcgtcagac
     8521 gtcgttcttt cagcatcatc gataaccgga acaggaaagg ttatatcacc aggcgatatc
     8581 agtgtttccc actggcccca ctacctgaag acagaaaata cgacagcctt cctgaccttg
     8641 tgctccatcc cgagcaggag acaataaaat gcaaagaaaa acattactcg cagcccttat
     8701 agccaccctg agtggaacgg catgccaggc tcatgcttat tcagtcaccg tcgtcgccag
     8761 ccggcctgtt gaagagcagg tcatccccag aatggaagcc atcaaagatg tccttggcaa
     8821 catactgagt acccagacag ccacgggtac cgctatcaat cagaactctg aaaagctggc
     8881 aagtgtcatt gcccagaacg gacaggcgac acgtcagcag atgattttca gtaatgaaac
     8941 tcagcgcctc gaggaggctc ggaaaagctt caccgtgccg gactccatct gcagtgaatc
     9001 cgcatcaggg attgcaacag aaagcaaaag tgcctcagca tccgcagcct caaaactcag
     9061 taaaggtggc ggtgtgagca accgtagcct ccgcgaccgt ctggccagcg cagcaaactc
     9121 tcccgtgcgg gaagcttatg atggcgcggc catacacgcc agttactgta cagaagcaga
     9181 atatgcacgt tttggaggaa ccgccgtttg tccttctgtg ggcgaaatac caggtggaga
     9241 cagtcaggta cgctcgattt accacggcgc aggtacagcg gacacacctg cggcactgac
     9301 atgggatcag aagcaaatag atgcagcgac tgcttacatg aaaaacactt cccgcccctc
     9361 tgccggtcgt gctctgggta aaggagaagt gaatacccag agtgggcgaa cctacgtcgg
     9421 actccagaac gaatacaacg gcatcattga ttctgcgtcg aatccccaac tgacgctgat
     9481 tgctgacagc acgcctaatg aaagcacacg taaagcactg gctgaaacac tgcagtcaga
     9541 ctcagcggcc gcttacttcg accaggtggc ttcatcagaa gcaaaagcac ggggatatat
     9601 gagtacccgt gagtttgaag cttttgaggc tggccggcgc tacgccaaca cagcatacct
     9661 ggtggattta caggaaatgc agggggataa cctgctccgt gaactggtaa gaatcactgc
     9721 gcaaatgaac tggcagctga acgatctgaa agaacagatc cgccagggta atgttatctc
     9781 tggccagcaa ctggctctga ctgcccgcca gtattatgaa aaacaactcg gtagccttga
     9841 gaaaacaatc aatcaggcaa acgcacgttg aaagctgacg tcagaacagg actgaaaaaa
     9901 tgaataagtt accggaaaat tcagaccaga cgaaaaacgt caaaaaatca ctatccataa
     9961 cccgcatagc cacccgggga attattaaca tttttgttcc tctgatggag actcgcctga
    10021 taacgaattc tgtacagcat atgctggaac aacaaaaacg caggctggac agatttcgtc
    10081 aggtaaataa taaaaaggcg caactccacc tcacgtggga agaagctctg caggccagcc
    10141 atatgtcagt agacgatctg gatcgtcgtt tccgccggcg cagaacagta tggcgattct
    10201 gttgctggag tctgctggcc atcgctttgt ttctcagtgg tatgctcttt gccgcctctt
    10261 cattacctct tacgactctg gtacgcgcca tcagcactct tgtgctgata ctgtcaggcg
    10321 tcgctctttg tgcttccaga gcactgattg ttacataccg cctctggcag ttgcatgaac
    10381 gaaaagtcag cgaacccgag caggggactt ttcgtgattt tctgaacacc cgcaatggct
    10441 ggcgcaatgc cacgttaatt gccgtaacca gtaaacaata ctgatcacgt ccagatgcca
    10501 gtaccactgg catgtcgcca tcccccttaa ttaaatcctg tgtggccttt gcccatacgc
    10561 aattctattc cggagttact gtgaaaattt tacttcgcgc actctgtgca ggccttgcta
    10621 tatcctcact gccggcaatg gcttcagtga cctatcagga tattgtgtct gccgcaacca
    10681 atcctgacga tctgtcccgt caggcgctgg tcacgatatt cggtgatgtg gtcaccaatc
    10741 cactgtcaac cagcgccccc accctaatcg gaagcatgtt cggggcgttc aacagtatca
    10801 tcgccgtact tgccgttgtc tggtttatgt tcattggtat ccgtcatgtt gtgcgttcgg
    10861 ggcatcaggg acaggtattc agcaccggac gcgatgtcgt cggcacactg agtgtcgttg
    10921 caggttttct gatgatcgtt ccaaccggaa atggctggag tctcgctcag ctcattatgt
    10981 tatggggcgc atcgataatg ggggttgggt ccgccaatgt gatggttcaa cttgccgctg
    11041 ataatatcgc aaatggttat tcaatgactg tacagccagt tcaggcatcc acacgaacag
    11101 cagcgcgtgg catttttgaa atggaactgt gtaagtatgc ggttaacgca ggactaaatg
    11161 attttaatca gacggccaaa tcctcgactt cactgatgac agaatcagct aaaaccgcca
    11221 gtggtaatta cactgtcacg gtatccaatg gcagcggtat ctgtggtaca gccagcctgt
    11281 cagtagaagg aaacggaaca acagatcaat cgacgattgg aaaattcttt aatcccttca
    11341 gtaaaaacga atacagcggt gttatctcag cacaacgtgc agccatggat aatatgatta
    11401 gcgacatgga caacgctgcc agtgagtttg tgacaacatt tctggaaaaa agaaattctg
    11461 gcaacggaac attgccggat atcgagacac ggattcagag agcagccgac gagtatgagc
    11521 gtgctgtaca aaaatcgcta cctattgata acggagaaca atccaggaaa gaagctctca
    11581 agtcttatct cacaacctat ggatgggtaa cgcttggcgc gtggtatcag acctttgcca
    11641 ctgctaacca gcgtctggca gagctggctg acagagctcc agctgtaact tcaatgtcat
    11701 cacttgggga ggttggcgat actgatttat ttagtgctgt tatgggggca tacaagactc
    11761 aattgcagaa ttcaacttat accccacctt taggtactat aacttcagca gacgaacaac
    11821 tactttcaaa aacaagcacg ccacaagatg ctttaatcaa gcccacagag aagtttgggc
    11881 aatggcttac gaacaatatt gccaccgagt ggactgattc gggtacaagt agcaatcaag
    11941 ttaatccact gataaaaatg aaaaatattg gtgataaaac tatggtcgct gcagagggta
    12001 tttggattac ttatacatct gctagagtta ttacttcagg aactgggagt tctatatttg
    12061 gtaaattcat agatttgacg acaagtgcta tttcaacact aaatgcctta cttgaggcct
    12121 tagcgccccc cgtatacttt ctgttactac tgctgttttg tgcaggattc tctttatcta
    12181 tttatttacc atttattccg tttattttct ggatgactgg gattggtaac tgggtcatta
    12241 gtgtattaat cggatgtaca gctggacctc tgtggggggc aactcatcta ggcacatcac
    12301 aggacagagg gagtcgtgct gcctacggtt atatatattt aatagacagc atgataagac
    12361 cacctatcat ggttttcgga ttcttttttg cctctgtagc cattatagca ataggtacta
    12421 tattaaactt tttattcggt gctgcactga ccaatgtaca aataagttca tttacaggta
    12481 tatttagcct cgcaggtttc ttacttcttt atgctagaag ttgcacaacc attgtagccg
    12541 cagcatttgc cttacaagca tacctcccag accatgtaat taatttccta ggaggacgtg
    12601 atggtgtaaa cacgcttggc aatatggctg gttcaataaa agagattttt gctggcagca
    12661 atagaaacat aagacacgca cctaatataa gagaggagca aattaaaagg atgaataacg
    12721 acaacaataa ggatggaata aagggataat aacttaatat atgacttgcc atatacattt
    12781 ggagagatta aaatatcaaa aagtgtttat ggaggtcata tataatgatt ggagcatatg
    12841 caaaccgtgg cggcacccat tctaaaaaag aaacatgcgt gatcgcattc gcacttttct
    12901 acattatttt cgccgtccca ttactaatca tttggaatac acctaccagt tggggactag
    12961 cagtaatccc aactggattc ctactatact ccggatataa aaatggaaga aagaaaagag
    13021 caatcgtaaa taatatccta gaacagataa agactgaata tcatgatgta ttcgatccag
    13081 acccatctta cgaacacaaa tcaataccat cattatattt cggaattgat atcaaaaaag
    13141 gtactgcgtt atatattcgg ctttacccca ataaaacatt agatgtcatt ggcattgata
    13201 ttgataattt tacacggaca gtagtaagag aaaactgtat ggaaatacac acaaagtatg
    13261 tcaatatgcc aatgttagaa ttgcctattg gtgttaactc tgctcgttct attgcaaaca
    13321 cattgcacgc aatggcaagt cgaggatatg attaccctgt cgactttcct cgcctgattc
    13381 aggaaaagcg taaggagtgg gagcagattg caggtatgcc tgtagctgaa gtattttaag
    13441 ataagcagcc tccataactg ccggttcaga tgagccggct tttgtttgca acaacacata
    13501 gcttatgccg tattaaataa acccaaggac ctatttatgg caaaaacaaa acaggaatgg
    13561 ttatatcagt tacgtcgctg ttccagctta aagacacttg agaaaattat tgctaaaaac
    13621 cagggcactt tagcctcgga taaaatagaa gcattcaact ctgcagttga tcatcgcctt
    13681 gcggaactga caatgaacaa attgtacgac aaagtaccgg cttctgtctg gaagcatgta
    13741 aaataacgcc aacaaaaata gcaggaaatc ccacacctgc tcttattcat gaataaacat
    13801 atccaatata ttccaatgcg aagaaataat ctccgtagaa tcccccatga gaaaaatatc
    13861 atatgggaga aaatcgcaat tatcacagcc agcgcattaa ttattttcaa cacaaaaagg
    13921 aaaaaacaat gaatctggta gacgcctttg tcaaaaaagt aatatccggg ccatatgaag
    13981 aatatggaaa atggtggata gatgtcgaat acatttcatg gggtgttccc gggaaaacaa
    14041 gactgatgtt tgactcaaag gagcaggcac tggaagttaa ggaagggtac aaatttttaa
    14101 catgagatct ctttttgtta aagggcagga agcggtcacc tcctgccctt agttacgttt
    14161 ccaggcttat cagtcgataa gttcccggat cagttccaga acagcaatca gcgcgtttgc
    14221 aacggcaact actgccctga gaacgatgat taacagatta atcatccgct tctccatcac
    14281 tggagaaaga accccgttgt tcgctcttac actgcctgtc acaacggttt ctatagtgtc
    14341 agttatagac agttcttctc cgaccagagc accaaaacca gcaccacctg atgttttggc
    14401 caggacttgt aacctgttct tcccgctgaa caatatgccg gacagaacat gcctcagagc
    14461 tgacatgccg agtatacact tatccagtac ttgcagaaat ataattccag acgtactatc
    14521 tacaggtcag ttatagacag ttcttttccg accagagcca cccactctgt aacggaacag
    14581 taaaaaaacc gacctcacca gtcggttttt ttacatctgt tgtttctcaa aatccgcccg
    14641 acatgcccgt cacaccgggg aaactcatgc tttgaatcag aaccaaccat ctcaactttg
    14701 ccgtctcctg aaaaaactgg cacattcagt tcgataacta cccataaata cagagagaaa
    14761 atccgatgtc agaaaagtgg agtaaagaat tcgactcttg ctttcaggtg gggagcatag
    14821 aagaaattgc cgatgctctc gagaaacgca gcggaagcga ggaaaacgcg ttagccatgc
    14881 tggcaatgac agccttcaca ctcatgaccc gacgtggtat ctgcgaaatg cagaacgtgg
    14941 cccccgatgg caaaggcatt cggctggagc taatcggctt cagggaaaat gaaacaatac
    15001 cggatacgct tcattgaaga agaaagggcg caatgaggtc agccttcgca acaaagcggc
    15061 ggcagaaaac ctgccgccgt gttgcccgtt aacgtttaac ttcgtaggct aacgttgcca
    15121 caagcactgt gtttccctgc tggagccgga gtccgcaaag cgaatccctc accatccaga
    15181 caaaacacag aatcgtcaca cagacgacga ttaacatcat taaaaacgtt cgctgtggca
    15241 tcatagcccc tccattgcct tacggcggtt atcgggctac tataatgttg tcgaagcatt
    15301 acagtagagc ccttggttga ttgataaaaa aatctccagg ggctttctgc tgtataccgt
    15361 ccacaaaacg ctttcggcat acagcctcaa gcgcccgcag ctattctaac gactttcgta
    15421 tctgtaacaa tccttttatt atttgaatga ttcagcgttg tttttgaagt taacaaccaa
    15481 cccaatacat ggttctctac ttcacaacaa cgcatgttat gctgatttta gttaataaaa
    15541 gaatcccctt aggagatgga aatgtcgcag ttaaaacaac ctattttcct gaaaaagata
    15601 aaaaaagtca tcaacacaat ccctgggctt gaagagcaaa tctttgcatg ccgaaataaa
    15661 aaacgcagcg acaatccatt attatttatc gacagaaaag atgaagaacg catactaatg
    15721 agtcgtctcc agagccaaca aaaaaatgaa gaactggctt ctaaactaga atctttattt
    15781 catggaaacg aattatcgtc accacacagt attttgtgtt ttatatactg gcgctataca
    15841 aagaaaattt atcgcctaag cgaggacatt atcagtgatg tggctaacac ctatgttgat
    15901 aacattcctg cacagatcct caaggaactc ccttcatgga gtatctatgt ttcagccgaa
    15961 aatctgcata ctatacttcc tacgtcctac ccgatacatg gatttttctt ttatccattt
    16021 ttggacaata atggaaatat tatccggctt ttcattattg atgatctgaa acaaagtcaa
    16081 ggaactacag ggctaaaaga aaaggatgtt gacgtcgtca ataatatcat cagaataaag
    16141 gactctcgtg aaggacttct tgactccaga aagatggagt gtatcgatgg tgaagtcgtc
    16201 gtaacagtta acgaaaagct caaagatttc agagacaggg agtttaatct tcttaacgca
    16261 cagatatcaa tggtgcttta tatctgttca cagatcaatg atataaaaga aaaaaatcaa
    16321 tttaaacggt cagaaaagca caaaaagcat gttcacactc accatgaact accagcacaa
    16381 aacattcggg agtgggacgt tggtattcga atggggcaag ccatacggca atatcgccaa
    16441 gcagaaccca cagggaaaga gcggacaaca ataggtagca aacgtcctca tatacgccgg
    16501 ggacactggc atacatactg gacaggaagt aagaaaccag aactagccca tgagcgtaaa
    16561 cctagattaa tatggttacc tccggtacca gttaatttag aagacgtaaa caaactaccg
    16621 gtggtaataa cacccattga taaatgacct gaaaagtatc ttttccggta ggatgtacac
    16681 atatctaaat tatcaggcta ctataatgtt ttctaggcat tacagtagaa cccctggttg
    16741 attgataaaa aatctccagg gggctttctg ctgtatacca tccacaaaac gctttcggca
    16801 tacagcctca agcgtccgcg gctattctaa cgactttcgt atctgcaaca atccttttat
    16861 cgcacggcta attcctctgg ttagctctta tcgcctgcaa ataaattttt aacctttccg
    16921 tttgatttaa attccagaaa tggagacttt gtcatgtctt acaatcgaca gcctgtcgca
    16981 gaagatccta tgcagatatg gggcgctgtt ggtgtccttc ttatcctgct gctattcgtc
    17041 atatggttat tcttgccgga agtggtttac gccagctgcc tgattcttca taccttatgg
    17101 ggactggtcg actggggacc atttcataac tatgcagcac cacgatacaa cctgcttgcc
    17161 atgaccggta acaacgccgc caacataagc tatagccagt ggattaacgt catggagcag
    17221 accataggta ttctgtggat gtatctttta cctgtgacac tctggtgttt atgggaatgg
    17281 tatcaacacc cgggacaaag ccgtttcacc cgcagacctg tagatattac ccgactgcca
    17341 cacatctttg cctcgttgtc ccctgctatc gccccagtac tggcagatgg tgatccggaa
    17401 aaactctttc atggtggcaa acggcctgag cggcgggttg ctctcacccc ggaagcattt
    17461 gtcgagcagc atgcactcat caccaatatg cagctcgatg ttgcagctgc aagacgatgt
    17521 ttcatggccc agttgggtaa acctttaacg tcctggaaag acatggcacc acatgaaaaa
    17581 gcgctctttg ccatatttgg ccttcagtat ttcctggatg atcgtaaggc agcattaaag
    17641 ctcatggata cactgaacct ctcatgcaga attaaaagca aacgggacag cgggaaattc
    17701 tgtacccctg tttattcact ggccaaatca gctttccaga gagtgattaa aagcaacgga
    17761 gcacagcaat ggctgaaaca acatcgctac gtccgcagtg ggctggtctg gctgtatgca
    17821 catgacctgc ggcttacgcc acccaactgg atttggctga aaggcgtgga cagaacgctg
    17881 ttttatgcat tacaccgcgc caataccacg aaaggattta ttgaaggcgc tggtgtggtg
    17941 gccgttgcac gtgcagaggc cgaagccatg cgttttggcc ttccctgccc tgaaccctgt
    18001 gttgatgaag cggtggaagg cttacggcgg gatatgctca gtctcggtct tatctgggat
    18061 gaaccacaac cagatcgcga ccggaaacgc cgcatcctga ccaactggtc cctcaccgac
    18121 gacatcctgc cccgtacacc tgctacagac aacgaattct gattatccgg agaactgaaa
    18181 atgacaatcg agtactttgc aacacgcatt gcaaaacata tttccgtgca ggcaatctgg
    18241 ccggatggca ggacagaaat tattgccgtc cttccacggg atgccctatc agggctggta
    18301 acacgaaata atcaactgat tcatatagcc tttgacgcca tgggcacccg taacagagaa
    18361 accgtcctga ttgataacca ggagcataac gctgaccaga tacttacagc tattgattcc
    18421 tgcctgcgcc ttgaatacct gatggaacgc cgcttcagca gaacgccttt gttccgtggc
    18481 ataatcgcca gcgttgtgct gttcgtaatg gcaacgattg gcttctctct gttccgctat
    18541 gttgatcgtg tattctggga tgatacaacg cctgaagcag tacagacagc aggtgagcca
    18601 cgactgcttc cccctcacct gaatcacact gtgccattaa atgaaggcat tcaactcccg
    18661 gttcccccga aaaaagacgt tcaggtaccg gagaaaacaa tcacaagcaa aaatccggaa
    18721 gccgcagctg cgcgacataa tctggctact gttctgaagc ggaacgccga tcggggcatg
    18781 tttaccatca acctgtcatc cggtcatgaa cgaaccctgt tcgcatttct cgatcctgcc
    18841 tgtcctaact gcagacttct ggagccggcc ttaaaacgcc tggccagcga cttcaatgtc
    18901 gttatctacc cggtttcagt tattggtgga gaggaatcca ccgaccgtgt ggcaccactg
    18961 ctgtgtgaaa aagatgctca gaaacgtgct gccggctggc accgactgta ttccgcagat
    19021 aacggaatga tgacgccatc agaagaaaca acgcctgcag atgaaacatg cctgaaagca
    19081 gccagagctg cgattgatgt taacaatgtc gccttccgta agttcggatt tgccggtacc
    19141 ccatgggtgc tgtccgacac cggctggcat ctgcctacag gaattctgca ggaaactggc
    19201 acgcttaatt tattcctgaa aaccaccgac agcgagtctg gccatgagtg aacatcgcgt
    19261 taaccccgag cttttacacc gtacagcctg gggaaatcct gtctggaatg cactccagag
    19321 tctcaatatc tatggctttt gcctggtggc aagtcttgtg gccagtttta tctggccact
    19381 tgcattaccg gcatgtctgt tgttcacact gataacaatg ctggtattta gtctgcagcg
    19441 atggcgctgc cctcttcgta tgcccatgac gctggaatgt gctgacccgt cacaggacag
    19501 aatgattaaa agaagtcttt tcagcttctg gccaaccctg ttccagtatg aggtcattct
    19561 ggaatcaccg gccagcggca tattctatgt tggttatcaa cgcgtcaggg atattggcag
    19621 ggagttatgg ctgagtatgg acgatctgac ccgccatata atgtttttcg ccaccaccgg
    19681 tggcggtaaa acggaaacca tctttgcctg ggcgattaac ccactttgct gggcaagagg
    19741 attcaccctt gtcgatggca aggcacagaa tgatacggca agaacgatct ggtatctggc
    19801 cagacgcttt ggacgtgaag acgatgtgga agtcattaac ttcatgaacg gaggaaaatc
    19861 ccgcagtgaa atcattctga gtggtgaaaa aacgcgtcct cagtcaaata cctggaatcc
    19921 cttctgttac agcactgagg cattcacagc ggagacaatg cagtcaatgc tgccccagaa
    19981 cgtccagggg ggcgagtggc agtcccgggc cattgccatg aataaggcac tggtatttgg
    20041 tactaaattc tggtgtgtgc gcgaaggcaa aacaatgtcg ctgcagatgc tccgtgaaca
    20101 tatgactctc gaagggatgg ccaaacttta ctgtcgtggc ctcgatgatc agtggccgga
    20161 agaagctatc gcaccgttac gtaactacct tcaggacgtt cccggtttcg acctgtcgct
    20221 ggtcaggaca ccatcagcct ggacggaaga acccagaaaa caacatgctt atctctccgg
    20281 gcagttttct gaaactttca gcacattcac ggaagcattc ggggatattt ttgctgaaga
    20341 ttccggtgat atcgatatcc gtgacagcat tcacagcgac aggattctga tggtaatgat
    20401 ccccgctctg gatacatcag cgcatacaac gtctgctctg ggacgaatgt ttatcaccca
    20461 gaaaagtatg attctcgccc gtgatttggg ctaccgcctc gaaggaactg attccgatgc
    20521 actggaagtc aaaaaatata aggggcgttt cccttatctg tgtttccttg atgaagtggg
    20581 ggcatactat acggaccgta ttgctgtgga agccactcag gtgcgttcac tggattttgc
    20641 tctgattttg acggcacagg accaggaacg tatagaagga cagacaacag ccacgaatac
    20701 tgcaacactg atgcagaaca cggggacaaa atttgccggc aggattgtca gcgagggtag
    20761 tacggccaga acgctgaaaa gcgccgccgg tgaagaagcc agggcgagaa tgaacaacct
    20821 gcagcgtcag gacggcatat ttggtgaatc atggattgac agcccacaaa tcagcatcct
    20881 gatggaaagc aagataaatg ttcaggagtt gattgaactt catcctggcg agttcttttc
    20941 tattttccgg ggagaaaccg taccatcagc atcattcttc atccctgacg atgagaaaag
    21001 ctgcagcagc gatcccgttg ttataaacag gtatatcagc gtggatgcgc cacgcctgga
    21061 ccgtctccgc cgtcttgttc cccgtactac tcaacgtcga ataccgtcac cggaaaatgt
    21121 cagtgccatc attggcgtcc tgactgcaaa accctccaga aaaagacgaa aaattcgcac
    21181 agagccgcac acgatcgtgg atacattcca gcaacgcatt gcaggacgtc aggcggctat
    21241 ggcaatgctg gaagagtacg acacagatat caacgcacgt gaaagtgcct tgtgggaaac
    21301 agcggtgaat acgcttaaaa cgaccacacg ggaagagcga cgaattcgct atatcacgct
    21361 gaacagacca gaactacctg aaacaaaaga ggaaaatcag atatcagtga gagcagaaag
    21421 agcaggtata aacctgttaa cgcttccaca ggacaataac cacccgacag ggcgtcctgt
    21481 aaacgggttt catcataaaa aaaacaaccg tccggactgg gacggaatgt actgaacagt
    21541 ggccgcgccg gattctggcg cggccttttt tttaacctgg agaaggcggt tcccagcgtt
    21601 tatcctgctc cggcggaggc agtgatgcgt catcgttgct gttcgccgcg atataatcgc
    21661 ggtagtagcg ttcacttcct tcacggtgat gatccacgtc cggtcgcgta atcctgtagt
    21721 cttcgtgacc ggtacggcct gtcacattat gccaggcaac catttcagca aagacctggt
    21781 taaattgttt gtcgtttcct tctggttcaa aacccatgcg tggatcacgc ccgaataata
    21841 ccggtgcaat caaatccagt ttatctgcca gcgcattgcg gtcatggtga ttacggaaaa
    21901 caaccctgtc accataatcc gtacagacaa actctcccgt ccgacggtca cggaaacgaa
    21961 cactcccgtt cttctgcaga cgggcctcga gatcaccggt attaccgtat accggcgttc
    22021 cgcccggttc acaaagcacg acacagcggt ctgtcgtcgt tgtgcgtgac ctgtctttac
    22081 ggcgatcgcg ataatcccag cctctcaact gcgatacagc agccctgtct ccctgagcag
    22141 cctgaatttc gacccactga cggtaagagg gtggatacca cttcccgtca gcaataagtt
    22201 tctgtcgctc atccctgatg tcttctttca gcctgatcaa tgcctgcatt cgctgaactt
    22261 ctgcaatgtg ataatgcagc ttacgtaatg ccggatcatc gtactgcgca cgaatgtgtg
    22321 acttccgcag acggcatgcc tgatgaattt cccgacaacg ttccccataa cgcagatctg
    22381 gtttacgcca ttgttcacgc catgccagat agcgggcacg caggtcagca cgggcctcag
    22441 ctctggcttc acgtcgctgc cggcgcagca ttgggtcacg tttactgctg accccgtacc
    22501 tgtcactgac agccagctcc gggttatagc gactttcagg ttgcaccctg tcaaacaaat
    22561 ctgctggggc actcacaaaa ggtccggcct gtggctctgc acgccccagt gtcagatcag
    22621 gatgaatgct gctggccttc accggcgttt gctcatgatt aaaggcatca acgacaacaa
    22681 gcccgtgatg ttgtttctgt agcatcagtc cctgttgtgc aaacagctca tgacaacgct
    22741 gccaggtaaa ctcaccctgt gtgatcattt cttcaatctg agggctacaa tggctgatgc
    22801 tgtatcccca cagactttct ttgtcagaaa acagttcgcg tttgatagcc ccctgcggcc
    22861 ccgtgcctgt acgcatacgg tgccattctt tatcggtcgc aggacagctc tccatacgac
    22921 gaccacggaa gcgttctgtt ggcgtaacct ggcggaaaat atctgttggt acaggctgcc
    22981 agccaccatc gagttgattc acattgtcga gcgtcagcag cgaccatacg ctgtcagcac
    23041 gaacgggagt ctggttatga tcataaccgt cacagataac caggtgacca tgctgaacac
    23101 gcatccataa tcccgcttca gccagtgtgc ggtgaatagc ctggcagttt tccagccgtc
    23161 cttcccgtgc catttccggc agacgttctc caaggtgacg acaggcatac tgctgcagac
    23221 tttctgtttc agcgattttt tccgggcgaa catcagcggc aatgaagtcc ggattatagc
    23281 gtcctggtgc ttccacctgg ctgaaaatgt cttttggtac tggcgtgtag tcacccattt
    23341 ttttcatgag tttttctgca caccaggagg gaccaaacga gtcaagctgt acacctcccc
    23401 tgttgcgatc ccagccatcc atcaccagaa attttccgtc catctgagac aggtacagac
    23461 catcttccgc aagacgacga tgcagggata accagtcatg tacaggttca ctgcgtaaac
    23521 cagcgaccgc tgtctgcgca acatactcgc gaaaagtttg tttttttccg cgtgtccagg
    23581 cgttctggcg atcacgttca acggcagttt tgcgaacgat acgatttccc ggcgcatgga
    23641 cccagcaacc gttatccgga gcaaaaccat gcttcagttc aagctcacgg caggcacggc
    23701 tgagtttttc ctgactccat gaaaggcaat tgagataacc tgtaaccgga tgcacccggt
    23761 tgaccgcaac gtgaacatgc aggttatcag tatcggtatg cacggcagag acatactgat
    23821 gttcacccag cccgagagat ttcagggtat ggcgtacact gtcataaatc tgttccggac
    23881 gcgggctttc atgggcctgc caggaaagaa tgtagtgaaa aacaggatca gtattatctt
    23941 tcgcatagtg tgcctgctgt gcaatgtact ccatatctgc agcggcagtt tcaagcgatg
    24001 tacagttgtg aaaacaggtc acaccataaa agttaaccca ttcgcagccg tccttcatga
    24061 catcaaccag cgccacgaat gactcatttc gaagacgtgt cgcataatca acaagacgac
    24121 tgaagcggtt tcggtgcggt tgttcagcct gcgaagaaga agataaatcc agttcctcat
    24181 cggtcatgtc atcccggaca gagacgtagg acaccaggtc ttcgaacgaa gacttgccgt
    24241 cccttctctt tttcggaatg actgcattca ccggagaatc ctcaaccttc cattaactgt
    24301 ttacgcaatg tatttgtaag ttcggttatg gcaacaagca cttctgcgta ttccttgtca
    24361 ccggttcttt ttccctgaac aaacagatgc ttctgcatcc ttcccagtct cattaactcc
    24421 ttcagaaaag catcatctgt ccgggagtta attcgcttat tcagtgctgc atttcggatg
    24481 taagcagata cagtaagtcc ggaatcttca gcttttttcc tgatggtttc atcctcaaca
    24541 ggagagaatc tgagtgttct gacaactgtc ttttgccgta cctcactttt ctttcttact
    24601 gcactatcac tcacttcagg ctccttacgg ggtgtcgggg cgaagccctg accagatggt
    24661 aattgtaata gcgtcgcgtg tgacggtatt acaattacac atcctgtccc gtttttcagg
    24721 ccattatagc ctgttatttt tgtgcatcat agtcttatgc agacggcaga ggcagggcgc
    24781 agccctgcca ggaggcagtt tttgatgata aaatcagact tcaacatgaa acggagagaa
    24841 agtgccaatg gcttctaaaa aattttactc agatgatgac atccagctgg caaaagctgc
    24901 cttatcggaa ttgccggatc tcaccgctca acggaaaaca ttgcgtgatt ttcttgatgc
    24961 cattcgtgat gacattattg tcctggtaag gacaaagggt tatacactgg cagatgttcg
    25021 tgacacgctc aaaaatgcag ggtatgaagt aggagagaag gcacttcgtg acattattcg
    25081 ggaagcagaa tcgaaaaaac catcccgccg ttcttcctct aaaacagcac ctaaaaagac
    25141 agattcaggc aggaaagatg gcatcgatat gaacaacaat tgatgtgaca atgtcacatc
    25201 gtgttctgag attatgatga ttacagaaaa aaaaagcccc ggcataaata ccagggcttt
    25261 tctgtttaat cagactcgtg gcggcaatgc accaggataa tgccgtgcaa taatatcatt
    25321 cagtttttca acaaggtcag aacgcttaaa gacaatgtgt acggtccctt tctggtagcc
    25381 acgcaccgta aaatattccc cttctaacag cttaccgaca ttgtcgccgt tcccgagaaa
    25441 ttcaccatac tgcgccccga tgctgttcct gaagtcagga acgttgcgcc cctccagcag
    25501 ataaaacgga cgtaccaggt catccagtgc ctcccgtccg ctgcagtcta gcgtcacacg
    25561 cccgttactc cagcggtaca gcaggttttc aataatgatt ttcttaccca ggcggcaggg
    25621 attattggtt ctgtaatccc atgacaattt ccggtagaca tcaatcagcc cctgttcaaa
    25681 cgtctgcatc ttgctggcat taagatggcg gaatgttgcc agtacattgt ccagggtgat
    25741 ttcaggacag gtgtcgctca tcagctggct gttccactca tcacgctggc atgaactcat
    25801 gaaggtgtac atgcccgtat ctgtcatcag gcggtcccag attttccggt cggcaagacg
    25861 ggtgatattc cttttcgctt cttccggttt atccatgcga cgaacggaat cagtcacgca
    25921 gtcttcaaac ccgtaaagaa aaatatcacc tgacgcatcg agcagaatcc tgcgcgctgt
    25981 cgccaggcat tccatcgcct gcatgaacag tgcaatacct tcgttacgct gcgcgatgat
    26041 gcggtcgatg gccacagacg gaataacatc tgtcgtgccg gcagtattca ggtcagcagt
    26101 gggtaaagtc tgattcatca cattgtctcc tcatcgtcac gactgccggg tcagccaggt
    26161 catttcccgg aggagcgaag ctccttctgc cgtccgggtc ttcggggatt tccccgcagt
    26221 ggacctttcc gacgggggac gctcaccacg tcacggggca gttgtccggg ggcagacgca
    26281 aaagtttttg acgcctgcgg caaaaagttt tgtggctggt acatctctcc cctggatgac
    26341 tgaaacggga tgtggtcgtg tatgtacccc cggaaagtcc gtctgcggag aacaggccgc
    26401 agtgcggcgg cagacaggca gagacagctg cgccatcagg cgcagtggcc ttacacaccg
    26461 taaggtgtgc agggagcgcc gcatccggcg cgactgaaga aaaacgacgg cacaacaatg
    26521 gcatgtggtg gtcactggca caccactccc gcacaggtga aaacagagaa aaccgcacga
    26581 catttacaac caaaaaaagt gaaatttctt cacttttttt cacttattta tcgcgctgat
    26641 ttggcaattg tgatgataaa ataaagtgaa gttttttcac tttttcaaag gtgttttatg
    26701 actggctggg aactgcgaat ctggcgaaaa agcatgctct ggtcacgcga aaaagcggcc
    26761 agagaatttg gcgtgacgca gagaacatgg cacgcctggg aaaatgcgga acaggtggac
    26821 gtcaccgtct ggaggaccac ccaggcactt tcagtccgtg acctgctgcc tcacatgcag
    26881 gggatgcgca aggcagatat catcaggcgt ctggaaaatg aactggggga aacggcagag
    26941 gatgtgtgag cgtgattcac agcctggcag aatgccaggc tactgctcat caggaaacag
    27001 ttttttcagt tcttcaccgg aaagtccggc tgcctcctga atccgttccg gcgtccagcc
    27061 catatcccgc agccggcagg ctgcttcccg cgccacttca agcgcacctt tcttaaaacc
    27121 ttctttaaaa ccttcgtcga aaccttcgtc gaaacctttc tgtataagac gttctgcaat
    27181 cgtcatactg ttttctctgc tcctgctggc aaaaggcccg gtattttgcc gggctgtgag
    27241 gttctcatca gtgaatgatt ttcttcagtt cgtcatcgga aagtccggta gcctgcttaa
    27301 tctgctccgg cgtcatcccc attttctgaa gctggcacgc aatagccagg gctttttcaa
    27361 gcgctccttc catgcgtcct tccatcctgc cttcctggcg acctttttgc tcaagacgtt
    27421 ctgcgatagt catcagttta tcctcatgct gcggcagacg ctcagccagc gcccgcataa
    27481 attccggtga tacagagtcc cctgcgttaa cgatgtaatg aatcagaaca cgcacctgct
    27541 cgtctgaaat ttccaccatg acctgcggga gtttgtccag cagctccatc atgtcacgat
    27601 ggcggatatg cttcatcagc agcgtcagtg cggccatccg gcgatggttc atgatttcat
    27661 tgtcatcaac gacagtgata tcaaccagcg gaaacggctt tgtgtatatt ttagccgcaa
    27721 gcgccggatt ctcaaaacag tccagccagt tcatgctgta cggatacggg ctgcgctcac
    27781 catgatagaa cagcaccgga atcaccagtg gcaacgtttt gtgctgctcc agatgtctct
    27841 gcatcgccgc cacactgtaa cgtaacatgc ggaaaggcat gtacagattt tcggtgctct
    27901 ggtgctcgat gagcgtataa acatagccgt ctttactccc ggtggttttc acgctccaga
    27961 ggatatcgct ggcgtactga tgcaggtccg gctctacaaa ggtggcgggt tccagcttca
    28021 gcgtggacag gtcgcacaac tgccggtact ccgcaggaag atgcagttcc agaaaatctc
    28081 tggcgacgtc gggattcgcc aggaacgacc ggaacgcggc atcatgcggc gtgggcgtcg
    28141 tggtgttttt cttcttactc acggttcctc catcaaatca gcagcatcgc agcaatcatc
    28201 gcccaaatcc ccacaaccga gaggacagca attgcgttca aagccatgac aacaatagcc
    28261 gcgttctgag tcacggcgta tttcttcagc aatctcttct gcggaaaggt aatcaaactc
    28321 ctcacgggcc agttccagga ccagtagatg ttgttctgtc ggcaatgtgg ccacaaaatt
    28381 atcaatagca gcactcaaac gtcgctgata tagctcataa acaagaccac aacggggcat
    28441 tagttcttcg gataatagtt ccagttttga gcgaattctg tcagcgttga aagtgacttc
    28501 atcaaaagac atatgaaaag ctttgtcagt atcaaaacaa gacttcattg ttatctccag
    28561 ccctcccggg ccctgaatga aagagaatct gtttcccttt tctgtttttt gtggagacac
    28621 catgcaacac agacgtcgtg atgtttttca tcttgctcac ggttcctcct ggtaaagtac
    28681 ctgaacacat cctgccacct gcacaggcag acggcagggg ttaatcagtg acagacccgt
    28741 tcaatttcaa gcgcgcggag caggtggccc cattcgctga ctttcatggc ggggatacgt
    28801 acccgcttct gctcactgca gcgtctggcg atatgaccgc tcatcgccag gacgtccggg
    28861 ttaatctcat cctgtgccag ctcctggcgt ctgaagcggg tatggcggtg caggggttta
    28921 ttctcccgca ggcactcttc acgcagacgc tttacatact cggcggttgc gaagataatt
    28981 gatggtttca tggcataatc tccatagata gtgattgaga tgccggactt cctggcgggg
    29041 aagcgccggc ggagagaggc agggtttatc gccctgcctt tttttcattt cggacagcga
    29101 cgcagtgcca gcgcgagcgc tttcatcttc cagccttccg gcgtgcggta catcaccttc
    29161 cagtagccgt cgatgaacac ataatggaag cgcacctctt cagtgctttc agtggcaata
    29221 gcctccatga aagaacggta ctcacgcgcc tcactgtcca tccggaaacc actgtcacgt
    29281 ccgtaataag ccgtcacacc gtccaccggg ttctgaagcg tatgcccggc gggtttgtcg
    29341 caacggggac cgaggcaacg gatatcaccg tgttcaacca gggcttcggc ctgctgaccg
    29401 gtggcatagt gggtatgcag gatgcgaccg ttccaggtcg gctcaccgtg caggtggcag
    29461 taaacggtac ggaacacccc gtcgcggcaa aaaacggaaa tcgtgctgct gacagtcatg
    29521 aaaacgtctc cttctgctga atcaggtcgc cgggccgacc ggttgctccc cggaggggcg
    29581 aaagcccctt ctgccgtcca cttcttcggg gtttctcccc gcagtggacc tttccgatgg
    29641 ggcgtccgtc accacgtcac ggggcagctg tccgggggcg gacgcaaaat tttttgccgg
    29701 gtttatggct aaaaattttg tggacggtat atcttcccct ggactgctga aacgggatgt
    29761 ggttactcca gcccccggaa agtccacagc gggaaacagg ccgcaggggt ggcggcggaa
    29821 gggttgactg cgccatcagg cgcagtggcc ttacacaccg tcaggtgtgc agggagcgcc
    29881 gtttccggcg cgacaggggc ggcgcgaccg gaacggtcgc tgcaagcctg gtttttcaga
    29941 catcggaccg tagcggcagc ccgaaaccgc gccagcgggt tcggcggaga ctggcgggtg
    30001 cgtcagcagc tgcctgtcgg agtcgggcct gacgaccgga tgccgccagg cagccgggag
    30061 ccgaaggtgt ccccgcctcc ggaaatcaga acaacagaaa cgacataaca gaaaaatgcc
    30121 tcacaccatg acgggcagga agggcagcgc cgcaggcgcg gccctcctgc atttcaggca
    30181 ggcgtaagcc tgccagggtt ttccggcggc ctggcaggcc atacccccgc cggagcgggg
    30241 gagtaaatca ccgacggaac acatgaccgt caataaaggt gaaggagtcc aggaataaat
    30301 cccgcgcata cgcctcatag tcaaaataga gcgccaccgt ctccggcacg tcagccagca
    30361 ggccggtatc actggcgaac tcaaccgcaa aagcctcctc actgtcagcc tcgccccacc
    30421 aggcatcgcg gaaggtgtca aaatccgtct caccggtatc ctccacccag agacgataag
    30481 cctcttcgca gccttcatcc cgtgccaggc ggaagccttc aacccaggcc cagttgatat
    30541 ggcattcaga ggccatattc cccgggaatc cctcataatc ctgaaacatc agttcaggat
    30601 cggcttcatc ctggtgaaga gcacggcagg cggcgaaaaa gtcgcgctca tcatcaaacg
    30661 tggtcaggtc aaaccagcgt ccggcgatgc ttccacagtt gtatttgtgc caggttccaa
    30721 cgtatacagc aggtgcaaca acagacattc ccgaatcctc catagtcaca tgttctgcga
    30781 caccgggcgg tgccgtgcct ccataaaagc cgggcgataa ggcggggatg caggggcgca
    30841 agggaagccg cagcctgacg cacacggctg acgggagttg cagggtgagg ccgcgaaacc
    30901 tgagcggacg aacgaccgga aaatcacggc agacgggaag gagggaccgg gtgaccgcag
    30961 cggcgaagcg tacccttgca tcaacgccag cccggctaag atggaggcac ggcacagccc
    31021 gcacacgacg ctgaggccac agagctgaaa acccacaagg ccatgccccg catggccggg
    31081 taaaagcgga gccgccggcg acttccttat tccggcgagt gcagaggaca cgccgcatga
    31141 cctccagacc acccctgata tgaaacgatc atgatcggcg tgtccctgcg taaaatatac
    31201 atgcctggtt caccggagaa tatctgtgat atccacaagt tttctgtcgc gcagccagtc
    31261 ctgcgcttca cgcaccacac aactgtccgg tttcaccgct ttcagcgatg atgccagtcg
    31321 cttgatcaac atcaccagtt cccgtgtctg tatgtccggc attgtctccg gcggagcagg
    31381 gggactctca tttccgacgc tcatcccatg cgcttccagt gtggcacgga caaaccaggc
    31441 ggcatcgacc agttgctgtc caatccaggc cagatcggca tttctgtcac gggctgccat
    31501 tcgctcgccc gacagcgcct tgctgatatg gctgcgcacc agattatcca ggagtgcctg
    31561 cgcttcttcc ggtgaaaagc cacctggtat ctctgtgcgc aacagccctt tcctgtacag
    31621 aagctgcagc agatcaacct gcgaccgcac agcaactatc agtacataac ggacaacatt
    31681 cgcactggca gtggtttctg tatcattcag cagttcttcc ggatcgttcc ccccggtgtt
    31741 gcagagcaac ggcaacagag gtcgcatcca cgcgggaacc tggtattttt cgtctgattt
    31801 catcatatta cgttctccag cttgttcggg atcatccact gctcaagtgc acgtacctgt
    31861 accggtgcac cacgaccggc ctcaccggct tcaaaaatca gccgccagag tggttcctcc
    31921 tgccagaaaa accggtcaaa tgatgacagt gatggaaaac gcccgcacca cccccagaaa
    31981 atcgtttcca gatcatgctc ctcaacaaca ccagaccagc gggacaacca gcttccgacc
    32041 gtggcgggag tatgaaacgc aaggtcaatc tgcgcctgag caaaacatgt ctggtattcc
    32101 agttcccgtc gttctgcctc acgttcccgc tggcggctgt atttctgctc tgtcagcgtg
    32161 gttttctgac gacgacgctc accttcacga aaaggcacgg acgggaacag acggtgcccc
    32221 gcatcggatg gcaggggaag aacacagact tccccaaaac tttcaatcag tttatccacg
    32281 gcagccagcc acaggagacg gttgccatga aattcctcct tcgtcagcgc aggggcaaaa
    32341 aagcggagat cggtcagcga aatccggcga ctgccattca ggcagcgaaa gaaagcggtg
    32401 gcataaggcc atgctgaaag tgtgcgtccc tgacgacgac gttgttctgt gacagccacc
    32461 gcctgcatgg cggcctgttg ttctgcgctg agggggatca gtgcccgtga acgtgcgctc
    32521 atgcctgacc tccttctgcc atcaggatat ggatgatgtc gttaacactg tatccctgcg
    32581 catccagtgt cgcggcaagc gccagcgtgt gactgatcgc ggcaggcgtg aagatatgtt
    32641 gcacctgaac gacggcgaaa ggctgtccac caccattcac cagaaccagc atccagagct
    32701 gagagacgtc tcccggcgaa cataatgcca ggtggaaacg ttcgtgggct ggcgtgaaac
    32761 gaacctggac ggggaaaaag cccccgaact cgctgccata ctctccgttc atcatccagt
    32821 tagccggtgc gtccacttta cgcatcacct cgtgagtgag attacggcgc atatcgcttc
    32881 ccgcagcacg gatttcttca tattcctggg cattcatgga ctgcagggca ttcagtgtca
    32941 gttcggtatt catcatcgta tttctccctc tgccgccccg tctccggcgg ggcggtgtgg
    33001 ttgttcatca ggcggcatca gccaggttat cggcgcgttc agtggcatcc gtctgtggac
    33061 gtggtgaaca catccagcca ggcacccagc ggttgtcttt catatggaac tctgcatgtt
    33121 cagcggcatc gcctttcttc atcttctctg cgtcccgtgc ggcaccggac agtccggcat
    33181 cattcagggc tgcgataatc tgcggctttt tcaggtgtcc gaagaagttt gctttcgtcg
    33241 gctgccacca gtcgcgcatg tgaaaaccga tggcgctctc cagtgagtca agcggactgc
    33301 gtgacgtgcg accacactcg cgggtctgga caccgttaag gctgcatgcg gtgcagaaac
    33361 tgagcaggga taacagcacc tcctgactga gtgacaggaa cgtcgtcatg tcccgtgacc
    33421 atccctccgg taacagggcc gcaagacggg ctttttctgc catcagcgcc aggaatgcgg
    33481 caccttcctt ccctgacggc gcatcgctgg tcagcgaata atgtttacat tccaggctga
    33541 tttgtgctgg tttactgtac gctccgctgt caaacacatt caggcagagc gtccatgcca
    33601 gcagtgccag agatttgtcc ggttgctgca tcagtgctgc ctggactgcc agcgtgcgtt
    33661 cggaagacat tttcgtcagc aacggcagac tgatttcctc cactgacgct ttctcctgca
    33721 cctgttccgt gcggtcagcg tcatcagtcg cgtcatcttc actgcgcaac tgcacaccac
    33781 gctggacaca tacgtttcca taacgccagg acaccaccac gccacttccg gcacgcatct
    33841 ccggcgtcca cgccctgacc ttcgccatgc agtcaatcag cttcatttct gcttccagca
    33901 gatcggattc ctcacactgg ttttccagcg cgtcgtaacg cgtcatcagt tcgttcaggc
    33961 gttcttcttc tgcctccgtc agcaccgctt ccggctccgg cagacagcgg tatgttccgg
    34021 catcctcacg gcactcaccg acaggctcca tgcgtccggc gcaccattcc cagccttcgg
    34081 cttcccgaag gtgttcagcg acagcctgga gtttttccag cagggcagca tcgagcgcca
    34141 cgcggtcgac ataaccgtcc ccgtcatcgc tgaacaaatc agtacgcagt tcgtcaggtg
    34201 agaaagcatc agcccccacg aagcggaatt tactgttacc tgccaccgcc acttcacttt
    34261 cggtcaccag acgacgaatg gtctgtactt ccggtttacc gccccatccc gactggcagg
    34321 cggcttcaaa cacctgcacc tgacgcgtgg tgtcgttctc cagcgccagc gcctgacagt
    34381 gctctgtggt gatgcggtct tctgccagcg catcgaggat gacaggcgca aggtctgcca
    34441 gtttcagcat tcgctgaacg tggcggggcg aatagcccag caaatcaccg atttgtgcag
    34501 gcgttttgcc ttcctgcgcc atcgcacgga atccggcaat ctgttcggca gggtgcatat
    34561 cccgacgatg accgttttca gtcattgatg cagccgtcgc cagctcctgc ggaataacct
    34621 tcacgcgtac aggccagtca gccggaatga tgccacgctc tgccagcatg ttgagtgcag
    34681 ccagtcggcg accacctgcg gcgacaccgt aacggtcacc aggcagggta tgcacgacca
    34741 gattctgcag cagtccgacg cccttaatgg actccgccag ttcgctgacg gactccgcag
    34801 aatacggcac cgtgcgcaca ttcagcggtg atttaatcag cgaggccagc ggcacgctca
    34861 cttcctccgt ctgcgccagc agggcagaca ggacagtttc ctgcgttttt acagatttac
    34921 ggcttgcttt gcgggtggtt tctggttcac acttcgttac aggcataatc atccccttat
    34981 aattgcttat gtcctgccgg acgttcgcgc gtccggcacc tctcttactt aagaatcccg
    35041 aaatccctga tgtactggtt catccagtac ccggcacagt cctcaaaatt ccaggagcgc
    35101 cagatcaacg tgccatcctg acggacaacc aggcgaaaat gcgttccctg atcatcctcg
    35161 ataaagacgt tccggtactg tgcggcaacg gcttccgcct gttcgcgggt aaaggagccg
    35221 tccggcagtc cctgaagtat tctgaaatat tcgctcatcc tcatatctcc ggtgatgccc
    35281 cgcacagggc ggggcggttg tcacagtcag cccgatcaga acgggatgtc gtctgaaaac
    35341 ccgtaatcct ccccctccgg cggttgcggc tgaggctctg gctgcgcggc cttacgtcca
    35401 cggcctttcg ttttcgcgcc accttttttc gtcgcgtcag cactctgtgg ctgcccattc
    35461 tgctgaggct tcggttgcgc ctgagcgttc tgctgtggtg cacgtcccag catctgcacg
    35521 gtgcccgtgg tcttaacaag aatttcagtg acgtaacggg tgataccgtt atcttcccag
    35581 ctacgggtac ggagttgccc ctcgatgtag acctgcgcgc ccttgcgcag atattcacca
    35641 gccacttccg cgagcttgcc gaacagcacc acgcggtgcc attccgtctg ctcccgcatc
    35701 tcccccgtct gtttgtcgcg ccagctttct gacgtggcca cctgcaggtt tgccactgcg
    35761 cccccgttgg ggatgtaacg gacttccgga tcattgccca gacggtaggg tagggtacgt
    35821 gtggtctttc aagataaatg gcgaatatgt cctgcttatc ttgagttaga tcaccgttac
    35881 cctccctccg aaccgtacgt gcacctttca atgcatacgg ctctccattg ctagcttatt
    35941 ggggataaac tcatttagca gaatccccac ttgagacagg tggttgcagg agtattcttc
    36001 ccttttcctg tctcagatcg ggtagttttc cgctatgtaa cttgtcgtgg caacttgcgc
    36061 acaaaatcat cgttttccgg cggcgtgcga tcatcattag ttgccacagg ctgggtttat
    36121 atccggcctt acgacctttc ttcaggtctt ttagctttct gacatgatgt acttcgcagc
    36181 gcccagtctt cgcacaatac tcgcagatcc ttgcccctaa tcgacgcatg atctctgttg
    36241 tgcgggttgt gatatgtgcg gttctcggtt ccgtatcgac aatcgttgtt cggttgcgat
    36301 tgacatgttt gagtttgaaa acctcaatct ttcgggatcc atttttggcc tgaacggtaa
    36361 tagccagatc tccattattt tgccgtagcg atttggcgac tttattcact gaactacgtc
    36421 gtttattcgc tagggtctta aaaaggctta tttgccatat gaaatataat tttgataatt
    36481 tatatttcat gtccagcgcc agactgtagt agttcgccaa tccgcgcatt tccgcgttga
    36541 aagtcagaac aatttcagct tcactgagat tttgtagact tgaacgatgt acagccttca
    36601 cattctcata acagccatat ttcttttggt gacaaaattt agcggctata ttgtcaggaa
    36661 cgaagagctg cacaattcct gtggtggatc tccggagagc gtgccgccct tgcattttct
    36721 gcttcagcaa tttctttgca tctgcctgtc tgatttcata gcctaaaaaa ttaactcctt
    36781 ctgagatatg gcggatcctg gtctttgctt cattaacttc caatcccagt gaagtagtaa
    36841 taaagtttct gacctgtctt gatatatgtt cagcatcttt cttcgagccg atgacaccaa
    36901 ttacgaagtc atcagcatat cgaacatagt acatacgcct gaagtttgga tcgttcatga
    36961 cctgagatgg tatagaacgt ttttcttcaa gcagtcgttc aatttctttc tttatggctt
    37021 ctttttctga ttcagaatca gttgccatac cgtctacttt ctttcgtagt ttatgaatct
    37081 tatgggccag cctgttcata tctggattcg ctcttcgttt tgtaccgctt gtatatgcag
    37141 gaattaagtt ctgttctaca aaacggtcca gtttgtcgag gtatatattt gccagtaagg
    37201 gagaaattat cccaccttgt ggcgtgccag aatatgagcg atggtatttc caattgtcca
    37261 catatcctgc cttcagccac tgttcgatta atttcaggaa attcttatcc ttaattttct
    37321 ctgccagtgt attcagcaat agtttgtggg ggatattgtc aaagaaacct ttgatatcaa
    37381 catccacgat ccatttaact ccgttccaga ctggacgaat agatctgagc gcagtttcac
    37441 acgaacgttt tggtctgaat ccatgagagt gttcagagaa tactggttca taaacccttt
    37501 ccagaataat tcttgctact tcttgcgcca gtttatcgtc tccacctgga atccccagcg
    37561 gtctggtttt tccgtccttt tttgggatct gaactctgcg tacaggtttc gctacgtatt
    37621 ctctactccg caatgttttt gccagcttct ctgctctttc gatagagaag ccatcaatgg
    37681 tatctgttga tacaccttga gtcagtgcac ctgcattggc ccgtatattc acgtaggctt
    37741 gcagccacag tccgggctca cacgcaattt tgtatagatt acgtactgga tacccttttt
    37801 ttgaagcatc ctcaattcca tctaatcttt tctcaagttc atcaggcagc attggctaac
    37861 cctcctctta gagattgatg tatctaacaa ctgtctccct tccccgcagc actgtgaggc
    37921 tttcatctcc cttccggttg atttatacct ttgctgcttc cgtataatgc ggactgccgt
    37981 agcccattac aggccgacct tgagtactat ggagactccg ctaccatgct gggtataaat
    38041 ccagtttagg tagtcccgta gtttcacggt gtggagatgc gatgtactta ggatgtcttt
    38101 cgatcgttta actatttcat caatagctgg cccgttagag tggtcacaat caacgtaggg
    38161 cggatttctt gtgctattac gggaataacg cttcaatcgt tctgcgttat tggtttcctg
    38221 tttcccacat agatctcgac ttcaacaaac ccagtttatc catatacatc ttgcattgag
    38281 tggtgatact tataacgatt tccgtattca ccaccctttt ctgtggatgc tatgttcacc
    38341 tctccttttc aggatctccg agcctgttac caagcgaggc taaccacagt atgcaatggc
    38401 tataccacta agccatgttg cttttcatgc aacactccat aaaacaccgc gcttcaacgg
    38461 cgcaccccga cgaggatgac cttgttgata ccacgtgcac tcataagaac ctcctgactg
    38521 aaagatgtga gataaaccgg ataccggcga cgggacgttc atgtgcccct tcagaggagc
    38581 gaaagctcct cctgccgtcc acttcacagg ggtttctccc cgcagtggac ctttccgatg
    38641 ggggcccgtt taccgcctca cgggacagct gtccgggggc ggacgcaaaa tttttagccg
    38701 ggttcatggc taaaaatttt gtggccggtg catctcaccc tggacagatg gaacgggagg
    38761 gggttacgtc tgccccccgg aaagtccaca gcgggaaaca ggccgcaggg gtggcggcag
    38821 gagggaggac tgctgcgcca tcaggcgcag tttcctcaca caccgtcagg tgtgcaggga
    38881 gcgcaggtca cggcgcgaca ggggcggcgc gaccggaacg gtcgctgcaa gccgggtttt
    38941 cacgcatcgg accgtagcgg cagcccgaaa ccgcgccagc gggttcggcg gagactggcg
    39001 ggtgcgccag cagctgcccg tcggagtcgg gcctgacgac cggatgccgc caggcagccg
    39061 ggagccgaag tgggcggtgc gacaggaagt cgcttaacgt attgttttac attgataaaa
    39121 ccagctatcc cattagctgt agcctaccgg gacaggcgct gccggcaacg gcggggtctg
    39181 aagctcccgg gacaacgaga gccgggcgtc agcccgggta aagccccgtg aggggcttta
    39241 ccttgctgca agcatcatgt ggcaggagag caaggctggt cagaagggtt aacacatgtg
    39301 aactgttgat aaacaccgtt atcggcaaca ggccaaagat gctgacaggc ctgaaccaaa
    39361 aggtacgggg tccggttgct acctcgcgca cagggagcac atgggcgcag agacccccgg
    39421 tgaagagaca gaacccgccc tgaccctctg tatgttaagc ggaacctggt aaacccgtat
    39481 cgctgcctta caggcaggtg aaccgtaagg aacactgtag gcggtgcggg cagaggagga
    39541 cggaaaaagc aaatgcccgg ttgtaatgac cgggatacgg ggcaggttcc ccgacgcgaa
    39601 agcgggcaga cttccgtctg gtctttaatt gcatgaaaag ctgtaaagca gtcaaaagga
    39661 tatcagcgag atgaatacac acatcagtgt gtccacgata ccccacccga caggctggca
    39721 caccatagac tggaaagcat gccatgcccg ggtgcgaaag ctacagttac ggattgcaaa
    39781 ggcaacccga cagcaacaat ggcggcaggt cagagaacta cagcgcatcc tcacccgctc
    39841 attctccggc aaagccgtgg ctgtcaggcg tgtaactgaa aataccggta aaaggacacc
    39901 cggtattgac ggaaaaatat ggcacacacc gaaggagaaa tgggaaggaa tatgcagcct
    39961 gaatctgtgt ggttacaggc cacagccact acggcgaata catatcccaa aatcaaacgg
    40021 caaaacgcga ccgctgggca tacccacaat gagggaccgg gccatgcagg cactgtggct
    40081 gctggctctg gaacccgtat ccgagaccac tgctgaccat aacagctatg gtttcagacc
    40141 aatgcgcagc acgcatgacg ccattgagtc catttttctg cggatgagcc agaaagtatc
    40201 gcccaaatgg atactggagg gcgatattaa agggtgtttc gataacatca gccatgactg
    40261 gctgctttcc catattccga tggacaggag actgcttaaa aaatggttga aagcaggtta
    40321 catggaaaga ggcgtgttta accatacgaa cagcgggaca ccgcagggag gcatcatatc
    40381 ccctgttctc gccaacatgg ctctggacgg actggagaag gaactgatgc aaacgttcag
    40441 gaaaagtggt tatcacagtg caaagcacca ggtgaattat gtgagatatg ctgatgattt
    40501 catctgttca ggcagctccc gtgaattgct ggaaaatgag gtcagaccac tgattgcagc
    40561 tttcatgcgc gaacgagggc tggaactgtc ggaagaaaaa accgcgatta cacatataga
    40621 taaaggcttc gactttttag ggcagaacgt caggaagtac aacggtaaaa tgctgattaa
    40681 accgtcgaag aaaaacctga agaacttcct ctgtaaagtc agagaaataa ttaaacgcaa
    40741 tccgacgctc ccggcatgga aactgatagg ccagctaaac ccggtaatcc ggggatgggc
    40801 tacctatcac cgacacgtcg tggcgaaaga aacatttaat tatgtcgaca cccaaatctg
    40861 gcgagctata tggcgatggt gtgtaagaag gcacccccga aaaggattgc ggtggatcgc
    40921 cggacgatac ttctcctttg aaggcaggcg ctggatcttt aaagccataa ccccggaagg
    40981 gaaaattctg actctcttcc gggcaatgga aacaccgata aagcgccata taaaaatcaa
    41041 aggcgaagca acaccataca cccccggaat ggaaatctac tttgaacgtc gtctggatct
    41101 aatctggaaa ggcaaatcaa agaagatgaa gacagtagtt caactctgga agaggcaggg
    41161 gaaacactgt ccgcagtgcg gacaacccat aaccaaccag accggatgga atatacatca
    41221 ccggatcagg aaagttatgg gcggcagtga cgaactgacc aatctcgagt tgttacatcc
    41281 gaactgccac cgacagttac acagcaggga agccggtgct caccgaaagc acttataaag
    41341 gcttgagcgg agtgcgggga aactcgcacg ctccgttctt agggggcggc ggcgcagcaa
    41401 tgtgccgctg ctacccgacc aataaaagac agccagaaac ggtgacagtg tcacggaata
    41461 tcacacctgt tccctgcata cagccataca ctaccttctg accggaaagc cgggccggca
    41521 gcgccgcagg cgctgcaccc cgcatttccg gcaggcgcca gcctgccagg ggttttcgcg
    41581 cgggctgaca ggcggcctcc accgcctgcc ctgtatcacc tgtttctgct gccctgaagg
    41641 atgtagtgac cgcccaggaa aaccgcctgc tgattcgcca caaaatcgca gatttcatca
    41701 acaatctgcg cagtggtgag cggtttctgc cccatttcac gacgccgcgc attaatcacg
    41761 gctttgtaat tgcgcagaat ttcgcgggtt tctgtgctga tattcatgac atgtgctccc
    41821 cgtccagcgc ctgtaacaca acgtccattg cttcgcgttc ctccctgacg aatgcgtcac
    41881 cgtcgccccc gttatcactc ccgacggcat acaggcgctt catttcactg cctgccagcg
    41941 ccatcacttt ttccagcatc accgccggaa ctgtcacctg acggctggcg cgcttttctt
    42001 ccatcagctc acgaacaacg tcgtgaacaa cgctgacatc cgcaccatgc tcaaaggcat
    42061 cgtccagtcg ctgcatgacg gtttccagct catcgtctgt cagactccag tcctgggcta
    42121 tgtgacgcac atccccacgg gtcagcacca cggcaaaaac gcattcactg tccggcacgt
    42181 ctgtatccag cacttcgcgg ataatttctt taacagtaca gtacatgttc tcgtctcctt
    42241 tacaggggcg gcattgccgc cccgtccgtt aatcagtcca gcgccgcgta aatcgcgttg
    42301 cattcagggt gaaattcgat gtgacgccac aactgcgcat cgcgcatccg gtaaagctgg
    42361 gtcagtcctg catccccgct gtcgtggtac agccacaact ggcggttaat cacaagggag
    42421 gtcaggatga tgcctgcggc atcagcactc acggtacggt caaaccagtt tgcaccgttc
    42481 accatgtgga aacggtcacc gtccggcatc atgtagccgc caccgtccgg caggcggatg
    42541 aagtgccaga agccgccctg atattccggc atcatttttt gcgccagcgc gtacacatac
    42601 gcctcggcat acagaaaatc gttgccaaac aggtaaggca gaaaggagag acggtcgcac
    42661 tcttcaacgt tcagagtgac aggtttcgca tattgcatga tgttttcctc cgttgttcac
    42721 atattccgcg acaccgggcg gtgccgtgcc tccataaaag ccgggcgata aggcggggat
    42781 gcaggggcgc aagggaagcc gcagcctgac gcacacggct ggcgggagtt gcagggtgag
    42841 gccgcgaaac ctgagcgggc gaacgaccgg aaaatcacgg cagacgggaa ggagggaccg
    42901 ggtgaccgca gcggcgaagc gtacccttgc atcaacgcca gcccggctaa gatggaggca
    42961 cggcacagcc cgcacacggc gctgaggcca cataactgaa aacccataag gccatgcccg
    43021 catggccggg taaagcggag ccggcggcga cgtcctttgt gctctgtccg ggaccggcag
    43081 gaaaaaggcg gggatttccc cgccatcgtc atcagccccg gatttttgcg agggcatccg
    43141 ccatgctgcg gatttcagcc cggccttccc ggaccacctc ccgcagaaca ccacggtcaa
    43201 accaccggcg gggcggttca tccggtatac gcagcacatc gcaggccagc ccactggaca
    43261 ggatatgctc aatacaatcg ctgaccagat acatttccac cgccgaaaaa cgtgcgcccc
    43321 ggttcaggat ggcatcgagc accacgggca ggttttcgtc gtcctcatcg agccagcagg
    43381 ggtgatcgct ttccttcacc accaggcgaa agcggcgggt ctggcgggtc agcaacgtct
    43441 gaccggttgt ggtcagcgcc gccctgatac gctgcgcatc ttctgccacc cggcaactga
    43501 cactgcgtac cgcatcgcgc actgcatcaa gaactgccct gatttcgtct tcggtcagcc
    43561 attctccggc atacgggaaa aacacctgtg ttccgtctgc cggaagtacc ggcagcgact
    43621 gccactgact gccagacagt accagttccg ccccggttcc ggtcagtttc tgaatggcgg
    43681 aggccaggag cggcggcagt acgccgccgt gacggttgat gagtaacatc gccagccggg
    43741 gcgcatccag cagaacataa atgctgatcc agcccggata cttcgggttc cgctggtcaa
    43801 catccgtctc ttccggccag ccctgcgcca gcagcaggtt gcgggcgtga cgacaaatca
    43861 gtgcgttcag tgttgtgttt tcgttcatga ttaatcgttc tccctgaatc gccgcccgga
    43921 ggcggcgata acatcagtcg ttttcgtgtc tgttgttttt cagcagggtg cgggcctgat
    43981 taatcaccgc ctgacggcgg gtgacgcatt ccgggacggc gaggccatga tcccgggcgg
    44041 cccattcacg tttccacaat gcctgttcag cggtctgaat cagggacgcc agcagttcag
    44101 cagggacggt cacctggcgg ttttcgctca cgttattgat gatctccatc gccacgccgg
    44161 aagaaatacc ggattcagtc cgctggtctt ccgggatgtc ctccaggcgc gccaggacgg
    44221 ttctgatttc atgatcggac agggaaatat ccattccgtc agcgagggcc tgaatctctt
    44281 ccggggacca gataaccagc atcagcggca tgtctcccgg atactttgct gccagcgccc
    44341 ggcagagcgt ttcgcatgtt ccgtacattc tcatctcctt ctcagtcttt aaagcacgca
    44401 tccagttcca gaatttcggt atatgcctcc atcaggaggc ggtttgcgcg aaacaacgtc
    44461 tgacgcacca gacgttccgg cagggtgtcg gcattaaagc tgtaccgctg ctccatctca
    44521 ttcatggttg tacgcaggtc gcacatggca ttggccacct ccgccacttc ggcgcgcagt
    44581 ttttcgtgtc ctgcatagtt catttacgca gcctccggca taaaccagtc atcattcgcg
    44641 gccccctgct gcatggcccg ttgcacggcg gcaaggcgtt gctgcccggc acggtgatac
    44701 tgctcaagca gctcgatacc gatataccgg cgtccggact ggagggcggc gacgcaggtt
    44761 gagccgctgc ctgcaaacgg gtccagcaca attgcgttcg ggtgtgtgaa gctctcaatc
    44821 agcggttgca ggctggtaac gggcttttcc gtcgggtgat gacgattgcc tgaatatttc
    44881 cagcccagca catccggcag agggttacgg ggccgggccg gactgccctt tgccaggatg
    44941 taagcgcatt cgtggcggta cgcgacatac gcagatttgg atgtgtagtt tttggtgaac
    45001 acgaggtgcc ctgccacgct gaatccggcg cgtttccagg ccgccataaa gcggtcaata
    45061 cggtgccagc cgtagaagct gaccatcagc gcgtcttttt tgagtacgcg gtacatttca
    45121 ttacaggccg gttgcagcca ttcatcggtt ttatcgccag cgatggtgcg cccggaacgg
    45181 tcacgaaaac cgacgaggta cggcgggtca gtcagtatga aatcaatggc gttatcagga
    45241 atacgggcca taacatcgat gcagttaccg aggacaaaac gggacataac aacgctcctt
    45301 ctcttacaga ggacaccggg agggcacccc tgtggtgccc gttccccgct gcctgtgggc
    45361 tgttcaccgc gtccggtaac gggtcaggcc gaccgtggaa taccgcagcc gtcgtctttc
    45421 tgacggcaag gctatgccgc gaaagcggct tgaagggcgt tcatcagaaa agggcgacag
    45481 gctggcgtac actgtcaccg acgccagccg ggagcggtaa aagcgcccgt cccgtgccca
    45541 ccggacgcgg gacactgacc acaggcagcg tttatgccgc gccgcgtcag ccggcgcagt
    45601 aaaaagagga gcacggcgac atcctttacc ggaaaagaaa cgggcggttg cccgcccgtc
    45661 tccgtcatac ttcatccgcc ataatgcgcc acattgtcga ctatccacgc aggcccggtg
    45721 acttccggca gctcatcgtc atctgtcggg gaagaccatt ccagttcccc ccacagcaca
    45781 tcaacaagct ctccgcgctc atacaactgc cagccacaga aatcacagcc ctgttcggcg
    45841 taccagtgct ccagcgtgca gccgaaaagg cggcttaatt ctgcaacaac gtcgctttcc
    45901 ggctgacacc acggcgtgtc gaaatctacc tgaatgaagt tttccccctg actgctgata
    45961 ttcaggtcat acccacaagg ccacttcacg ccataccgtt ctgtatacca gtgatatgca
    46021 gaaggaacac cgttcagaac accgccgtta aagccattca cttcaatatc caggcgggtc
    46081 ggcaaaaccg tcagcaggtc aaacggcatg gttttttccg gcagtacgtt gtcacacaga
    46141 cggttccacc acaccgatac atcctcgtta ctccagaagc cacaccagtc acctcttttt
    46201 gcggtgaaaa gtgcggtgat ggtatccctg acatcgtccg gtaatccttc ccagcgacgc
    46261 tgtccagtac cgctctgcag ccagagttca tgcagcatca ggcagttttg ttcatccagt
    46321 agcacaccgt tctgcaggtg tgtcagccag cgtgtgaacg cgatattctc cggcgataca
    46381 acaccacgtc cggcagccgt cagtccgggg cacggttcaa actgcacatc ttcagtggtc
    46441 tgcagaagtc cggcacttcc ggccagaaac agctgaatac cttcatttgt ggcgcggcga
    46501 taaaacggtg tgactgcgcc gctggccagt cgtttaatct cagcgatctg tgccggttca
    46561 ccagaaaaat acatacgatt cgagcaccag tttggcatgg gaattctcct ctcacatgcg
    46621 gcctccatca ggccgtgccg cacctgtaac cgggcgaccg catacgaatg caggtgcggc
    46681 cccgaagccg cagcgcgtgg aggaggaacg acgaaacgtg accgggtgag gaggccggcg
    46741 acagcgacac acttgcatcg gatgcagccc ggttaacgtg ccggcacggc ctgggtaacc
    46801 aggtatttta ttcacagaac cgtgcgcaaa atgctgtgga taagctggac acagcagccc
    46861 acagcaggca tacagccaca cactcagaga attgagcgtt ttttagtcac aacaatgaca
    46921 tttgactgtg tgcggattca gttattagaa tactgtataa acatacagca taaagaaaag
    46981 ggagatgaga acatgatccg cattgaaatt cttttcgacc gccagagcac aaaaaacctc
    47041 aaatcaggca cacttcaggc gctacagaat gaaatcgaac aacgtctgaa accacactac
    47101 ccggaaatct ggctgcgtat agaccagggc agcgccccgt ctgtatctgt cacaggagcc
    47161 cgcaacgaca aggataaaga acgtatcctg tctctgctgg aagaaatctg gcaggacgac
    47221 agctggctgc ctgcagcatg agtaccgttt atcaccgtcc ggctgaccct tcaggcgatg
    47281 acagttacgt gcgaccgttg tttgccgatc gttgccaggc cggttttcct tcgcctgcca
    47341 ctgattatgc tgagcaggaa ctggatctga acagctattg catcagcaga cctgcagcca
    47401 ccttctttct gcgcgccagc ggtgaatcga tgaaccaggc tggcgtgcag aatggtgatc
    47461 tgctggtagt ggacagggcc gaaaaaccac aacacgggga catcgttatc gctgagatcg
    47521 acggtgagtt caccgtcaaa cgactgctgt tgcgcccacg cccggcactg gagccggttt
    47581 cagacagccc ggagttccgc acactgtatc cggaaaacat ctgtattttt ggtgttgtca
    47641 ctcacgtgat acacaggacg cgggagttac gctgatgttt gcactggctg atatcaacag
    47701 tttctacgcc tcatgtgaaa aagttttccg cccggacctt cgcaacgaac cggtcatcgt
    47761 actcagcaat aacgatggct gtgtgatcgc gcgcagcccg gaggcaaaag cccttggcat
    47821 cagaatgggg cagccctggt ttcaggtgag acaaatgcgc ctggagaaga aaatacatgt
    47881 attttccagc aattatgcgc tgtaccacag catgagccaa cgggttatgg ctgttctgga
    47941 gtcgctttct cccgcagttg agccctactc aattgatgaa atgttcattg atttgcgggg
    48001 gataaatcat tgcatctctc cggagatttt tggtcatcag ctcagggaac aggtaaagag
    48061 ctggacagga ctcaccatgg gggtgggcat tgcgcctaca aaaacgctgg ctaaaagtgc
    48121 ccagtgggca acaaagcaat ggccacagtt ttccggtgtg gtcgcgctga cggcagaaaa
    48181 ccgtaatcgg accttgaagc tactggggct gcagccagtt ggtgaggtct ggggagtagg
    48241 acgcagactg acggaaaagc tgaatgcgct gggtattaac acagcactgc agctggcgca
    48301 ggctaacacg gcattcatcc ggaaaaactt cagcgtcatt cttgagcgta cggtacgcga
    48361 actcaacggc gagtcctgca tatccctgga agaagcacca ccggcaaaac agcagattgt
    48421 ctgtagtcgc agttttggtg aacgaatcac agacaaagat gccatgcacc aggctgttgt
    48481 tcagtatgca gagcgggccg cagagaaact acgtggggag cgtcagtatt gccggcaggt
    48541 gacgacattt gtacggacat ccccctttgc agtaaaagaa ccctgttaca gcaatgccgc
    48601 tgtggaaaag cttccattgc ccacacagga cagccgggac attattgccg ccgcatgcag
    48661 agccttaaac catgtctggc gtgaagggta ccgctatatg aaggcaggag tcatgctggc
    48721 tgatttcaca ccatcgggta tagcgcagcc gggattattt gatgaaatcc agccccgtaa
    48781 aaacagtgaa aagttaatga aaacactcga tgaactgaac cagtcgggaa aagggaaagt
    48841 gtggtttgcg gggcgaggaa ccgcccctga atggcaaatg aaacgggaaa tgctttctcc
    48901 tgcgtatacc accagatgga cagatttgcc agtagcccag ttatgaatat gtaatccacc
    48961 cataatattg ttatcttgtt atcttgttat cttgttatct tgttgtcttg ttatcttaat
    49021 taatctataa atcaaatact taacaactta ctaagttgtt aacataacaa aaataattgc
    49081 atggttcgcg ttcagatggc aatattaagt tgttaactta acagcttaat atgaggctat
    49141 aatgataata gtattaggta gtcaaaaggg tggggtaggt aaaagtacac tggcggtatc
    49201 tatagctgcg tatctgatgt cactaggcaa tagagtgatt attgtcgacg cagatgacca
    49261 gaaatcagta ttaacctggt acaacaatcg ccctgaagat ctccctcata ttccggttac
    49321 aggcgcgaca ggtaacatca aagccatgtt aaaggaacac gaaaaatcct atgattttgt
    49381 tattgcagac tgtgctggcc gtgatagcgc agaaatgcgt agtggattga tggccgcaga
    49441 tgtattcatt tctcctttgc gcccatctca gatggacctg gatgttgtgc ctcatacatg
    49501 ctccgttttt acagcagcaa aagattttaa tgaggatgtt cggggatatc tcgttttaaa
    49561 catgacgccc acaaatatgt ttgttaatga agccaatgag gcagctgaag tacttaagga
    49621 ttaccctgaa atgcatctgg caaactcccg ggtatgtgat cgtaaagcac atcgagatgc
    49681 ttgggccgaa tcaatgacaa tttttgaaac gcaaaatgat aaagcccagc aagaaatcga
    49741 agcgttagtg aaagaggtta ttctgtgaga aatagagcaa acacttcacc tcgtgacgag
    49801 gcagcattta ttaacggtgg cacggctggc cttgataata ccaaaaagtc atcagataaa
    49861 tcatcggttg taagcaaagc aaaaccagtg agtatttctt tttttgaaga aaacctaaaa
    49921 gacattgatg cccttataac ggctgagatg gtttcaggta aaggcagagt gaatcgttct
    49981 gatgttgtca gggcggcggt agaagcactt aaaacactat caaaaacaga ggtatcacga
    50041 ttgatagcag aagtaaaaca aagataacac cttgagataa caagataaca agataacaag
    50101 ataacacctt gttatcttgt tatcttgtta tcttgtcatc ttgttatctt gtcatcttgt
    50161 tatcttgtca tcttgttatc ttgttatcgg ggtctgacgc tcagtggaac gaaaactcac
    50221 gttaagggat tttggtcatg agattatcaa aaaggatctt cacctagatc cttttaaatt
    50281 aaaaatgaag ttttaaatca atctaaagta tatatgagta aacttggtct gacagttacc
    50341 aatgcttaat cagtgaggca cctatctcag cgatctgtct atttcgttca tccatagttg
    50401 cctgactccc cgtcgtgtag ataactacga tacgggaggg cttaccatct ggccccagtg
    50461 ctgcaatgat accgcgagac ccacgctcac cggctccaga tttatcagca ataaaccagc
    50521 cagccggaag ggccgagcgc agaagtggtc ctgcaacttt atccgcctcc atccagtcta
    50581 ttaattgttg ccgggaagct agagtaagta gttcgccagt taatagtttg cgcaacgttg
    50641 ttgccattgc tgcaggcatc gtggtatcac gctcgtcgtt tggtatggct tcattcagct
    50701 ccggttccca acgatcaagg cgagttacat gatcccccat gttgtgcaaa aaagcggtta
    50761 gctccttcgg tcctccgatc gttgtcagaa gtaagttggc agcagtgtta tcactcatgg
    50821 ttatggcagc actgcataat tctcttactg tcatgccatc cgtaagatgc ttttctgtga
    50881 ctggtgagta ctcaaccaag tcattctgag aatagtgtat gcggcgaccg agttgctctt
    50941 gcccggcgtc aacacgggat aataccgcac cacatagcag aactttaaaa gtgctcatca
    51001 ttggaaaacg ttcttcgggg cgaaaactct caaggatctt accgctgttg agatccagtt
    51061 cgatgtaacc cactcgtgca cccaactgat cttcagcatc ttttactttc accagcgttt
    51121 ctgggtgagc aaaaacagga aggcaaaatg ccgcaaaaaa gggaataagg gcgacacgaa
    51181 aatgttgaat actcatactc ttcctttttc aatattattg aagcatttac cagggttatt
    51241 gtctcatgag cggatacata tttgaatgta tttagaaaaa taaacaaata ggggttccgc
    51301 gcacatttcc ccgaaaagtg ccacctgacg tctaagaaac cattattatc atgacattaa
    51361 cctataaaaa taggcgtatc acgaggccct ttcgtcttca agaattttat aaaccgtgga
    51421 gcgggcaata ctgagctgat gagcaatttc cgttgcacca gtgcccttct gatgaagcgt
    51481 cagcacgacg ttcctgtcca cggtacgcct gcggccaaat ttgattcctt tcagctttgc
    51541 ttcctgtcgg ccctcattcg tgcgttctag gatcctccgg cgttcagcct gtgccacagc
    51601 cgacaggatg gtgaccacca tttgccccat atcaccgtcg
//
LOCUS       DADMHM010000006        42179 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.006, whole genome shotgun sequence.
ACCESSION   DADMHM010000006 DADMHM010000000
VERSION     DADMHM010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 42179)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 42179)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..42179
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.006"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(188..264)
                     /locus_tag="JN125_000336"
     tRNA            complement(188..264)
                     /locus_tag="JN125_000336"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(228..230),aa:Arg,seq:acg)
     gene            complement(268..360)
                     /locus_tag="JN125_000337"
     tRNA            complement(268..360)
                     /locus_tag="JN125_000337"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(324..326),aa:Ser,seq:gct)
     gene            complement(676..861)
                     /gene="csrA"
                     /locus_tag="JN125_000338"
     CDS             complement(676..861)
                     /gene="csrA"
                     /locus_tag="JN125_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001774971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HAY8870234.1"
                     /translation="MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHR
                     EEIYQRIQAEKSQQSSY"
     gene            complement(1096..3726)
                     /gene="alaS"
                     /locus_tag="JN125_000339"
     CDS             complement(1096..3726)
                     /gene="alaS"
                     /locus_tag="JN125_000339"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HAY8870235.1"
                     /translation="MSKSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGM
                     NQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDY
                     FKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDN
                     KGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQ
                     FNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDL
                     SNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKL
                     VGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGDTLDG
                     ETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREASGFGADYNAMI
                     RVDSASEFKGYDHLELNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGD
                     KGELKGANFSFAVEDTQKYGQAIGHIGKLAAGSLKVGDAVQADVDEARRARIRLNHSA
                     THLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRVVEDLVNAQIRRNL
                     PIETNIMDLEAAKAKGAMALFGEKYDERVRVLSMGDFSTELCGGTHASRTGDIGLFRI
                     ISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTR
                     QLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLG
                     STIIVLATVAEGKVSLIAGVSKDVTDRVKAGELIGMVAQQVGGKGGGRPDMAQAGGTD
                     AAALPAALASVKGWVSAKLQ"
     gene            complement(3854..4354)
                     /gene="recX"
                     /locus_tag="JN125_000340"
     CDS             complement(3854..4354)
                     /gene="recX"
                     /locus_tag="JN125_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HAY8870236.1"
                     /translation="MTESTSRRPAYARLLDRAVHILAVRDHSEQELRRKLAAPIMGKN
                     GPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGYGPARIRQELNQKGIS
                     REATEKAMRECDIDWCALARDQATRKYGEPLPTVFSEKVKIQRFLLYRGYLMEDIQDI
                     WRNFAD"
     gene            complement(4597..5658)
                     /gene="recA"
                     /locus_tag="JN125_000341"
     CDS             complement(4597..5658)
                     /gene="recA"
                     /locus_tag="JN125_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HAY8870237.1"
                     /translation="MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTG
                     SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP
                     IYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
                     GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKF
                     YASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELV
                     DLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNS
                     TPDFSVDDSEGVAETNEDF"
     gene            complement(5738..6235)
                     /gene="pncC"
                     /locus_tag="JN125_000342"
     CDS             complement(5738..6235)
                     /gene="pncC"
                     /locus_tag="JN125_000342"
                     /EC_number="3.5.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide-nucleotide amidase"
                     /protein_id="HAY8870238.1"
                     /translation="MTDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAD
                     SSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSEPVVVEMVIGALKAARADYAVSI
                     SGIAGPDGGSEEKPVGTVWFAFATARGEGITRRECFSGDRDAVRRQATAYALQTLWQQ
                     FLQNT"
     gene            complement(6380..7465)
                     /gene="mltB"
                     /locus_tag="JN125_000343"
     CDS             complement(6380..7465)
                     /gene="mltB"
                     /locus_tag="JN125_000343"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic murein transglycosylase B"
                     /protein_id="HAY8870239.1"
                     /translation="MFKRRYVTLLPLFVLLAACSSKPKPTETETTTGTPSGGFLLEPQ
                     HNVMQMGGDFANNPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQAPTT
                     SVKPPSGPNGAWLRYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGIIG
                     VETRWGRVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFA
                     GAMGYGQFMPSSYKQYAVDFSGDGHINLWDPVDAIGSVANYFKAHGWVKGDQVAVMAN
                     GQAPGLPNGFKTRYSISQLATAGLTPQQPLGNHQQASLLRLDVGTGYQYWYGLPNFYT
                     ITRYNHSTHYAMAVWQLGQAVALARVQ"
     gene            7721..8284
                     /gene="srlA"
                     /locus_tag="JN125_000344"
                     /gene_synonym="gutA"
     CDS             7721..8284
                     /gene="srlA"
                     /locus_tag="JN125_000344"
                     /gene_synonym="gutA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIC"
                     /protein_id="HAY8870240.1"
                     /translation="MIETITHGAEWFIGLFQKGGEVFTGMVTGILPLLISLLVIMNAL
                     INFIGQHRIERFAQRCAGNPVSRYLLLPCIGTFVFCNPMTLSLGRFMPEKYKPSYYAA
                     ASYSCHSMNGLFPHINPGELFVYLGIASGLTTLNLPLGPLAVSYLLVGLVTNFFRGWV
                     TDLTTAIFEKKMGIQLEQKVHLAGATS"
     gene            8281..9240
                     /gene="srlE"
                     /locus_tag="JN125_000345"
                     /gene_synonym="gutE"
     CDS             8281..9240
                     /gene="srlE"
                     /locus_tag="JN125_000345"
                     /gene_synonym="gutE"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIB"
                     /protein_id="HAY8870241.1"
                     /translation="MTRIRIEKGTGGWGGPLELEATPGKKIVYITAGTRPAIVDKLAQ
                     LTGWQAIDGFKEGEPAEAEIGVAVIDCGGTLRCGIYPKRRIPTINIHSTGKSGPLAQY
                     IVEDIYVSGVKEENITVVGDATPQPSSVGRDYDTSKKITEQSDGLLAKVGMGMGSAVA
                     VLFQSGRDTIDTVLKTILPFMAFVSALIGIIMASGLGDWIAHGLAPLASHPLGLVMLA
                     LICSFPLLSPFLGPGAVIAQVIGVLIGVQIGLGNIPPHLALPALFAINAQAACDFIPV
                     GLSLAEARQDTVRVGVPSVLVSRFLTGAPTVLIAWFVSGFIYQ"
     gene            9251..9622
                     /gene="srlB"
                     /locus_tag="JN125_000346"
                     /gene_synonym="gutB"
     CDS             9251..9622
                     /gene="srlB"
                     /locus_tag="JN125_000346"
                     /gene_synonym="gutB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIA"
                     /protein_id="HAY8870242.1"
                     /translation="MTVIYKTTITRIGASATDALSDQMLITFREGAPADLEEYCFIHC
                     HGELKGALHPGLQFTLGQHRYPVTAVGSVAEDNLRELGHVTLRFDGLNEAEFPGTVHV
                     AGPVPDDIAPGSVLKFESVKE"
     gene            9626..10405
                     /gene="srlD"
                     /locus_tag="JN125_000347"
     CDS             9626..10405
                     /gene="srlD"
                     /locus_tag="JN125_000347"
                     /EC_number="1.1.1.140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sorbitol-6-phosphate dehydrogenase"
                     /protein_id="HAY8870243.1"
                     /translation="MNQVAVVIGGGQTLGAFLCHGLVAEGYRVAVVDIQSDKAANVAQ
                     EINAEYGESMAYGFGADATSEQSVLALSRGVDEIFGRVDLLVYSAGIAKAAFISDFQL
                     GDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFG
                     GVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYATKLGIKPDQVEQYYIDK
                     VPLKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGGQVMF"
     gene            10510..10869
                     /gene="gutM"
                     /locus_tag="JN125_000348"
     CDS             10510..10869
                     /gene="gutM"
                     /locus_tag="JN125_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GutM"
                     /protein_id="HAY8870244.1"
                     /translation="MVSALITVAVIAWCAQLALGGWQISRFNRAFDTLCQQGRVGVGR
                     SSGRFKPRVVVAIALDDQQRIVDTLFMKGLTVFARPQKIPAITGMHAGDLQPDVIFPH
                     DPLSQNALSLALKLKRG"
     gene            10936..11709
                     /gene="srlR"
                     /locus_tag="JN125_000349"
                     /gene_synonym="gutR"
     CDS             10936..11709
                     /gene="srlR"
                     /locus_tag="JN125_000349"
                     /gene_synonym="gutR"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucitol operon DNA-binding transcriptional
                     repressor SrlR"
                     /protein_id="HAY8870245.1"
                     /translation="MKPRQRQAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILE
                     HAGTVIRTYGGVVLNKEESDPPIDHKTLINTHKKELIAEAAVSFIHDGDSIILDAGST
                     VLQMVPLLSRFNNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSASFHGQLAENA
                     FEHFSFDKLFMGTDGIDLNAGVTTFNEVYTVSKAMCNAAREVILMADSSKFGRKSPNV
                     VCSLESVDKLITDAGIDPAFRQALEEKGIDVIITGESNE"
     gene            11702..12666
                     /gene="gutQ"
                     /locus_tag="JN125_000350"
                     /pseudo
     CDS             11702..12666
                     /gene="gutQ"
                     /locus_tag="JN125_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311591.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose-5-phosphate isomerase GutQ"
     gene            complement(12663..14177)
                     /gene="norR"
                     /locus_tag="JN125_000351"
     CDS             complement(12663..14177)
                     /gene="norR"
                     /locus_tag="JN125_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311592.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitric oxide reductase transcriptional regulator
                     NorR"
                     /protein_id="HAY8870246.1"
                     /translation="MSFSVDVLANIAIELQRGIGHQDRFQRLITTLRQVLECDASALL
                     RYDSRQFIPLAIDGLAKGVLGRRFALEGHPRLEAIARAGDVVRFPADSELPDPYDGLI
                     PGQESLKVHACVGLPLFAGQNLIGALTLDGMQPDQFDVFSDEELRLIAALAAGALSNA
                     LLIEQLESQNMMPGDATPFEAVKQTQMIGLSPGMTQLKKEIEIVAASDLNVLISGETG
                     TGKELVAKAIHEASPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFE
                     MADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLREE
                     VLAGRFRADLFHRLSVFPLSVPPLRERGDDVILLAGYFCEQCRLRLGLSRVVLSAGAR
                     NLLQHYRFPGNVRELEHAIHRAVVLARATRNGDEVILEAQHFAFPEVTLPPPEAAAVP
                     VVKQNLREATEAFQRETIRQALAQNHHNWAACARMLETDVANLHRLAKRLGMKD"
     gene            14363..15802
                     /gene="norV"
                     /locus_tag="JN125_000352"
     CDS             14363..15802
                     /gene="norV"
                     /locus_tag="JN125_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic nitric oxide reductase
                     flavorubredoxin"
                     /protein_id="HAY8870247.1"
                     /translation="MSIVVKNNIHWGGQRDWEVRDFHGTEYKTLRGSSYNSYLIREEK
                     NVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYC
                     TANAIDSINGHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLTGDA
                     VLFSNDAFGQHYCDEHLFNDEVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNL
                     PVDMIATSHGVVWRDNPTQIVELYLKWAADYQEDRITIFYDTMSNNTRMMADAIAQGI
                     AETDPRVAVKIFNVARSDKNEILTNVFRSKGVLVGTSTMNNVMMPKIAGLVEEMTGLR
                     FRNKRASAFGSHGWSGGAVDRLSTRLQDAGFEMSLSLKAKWRPDQDALELCREHGREI
                     ARQWALEPLPQSTVNKVVKEETSATTTADLGPRMQCSVCQWIYDPAKGEPMQDVAPGT
                     PWSEVPDNFLCPECSLGKDVFEELASEAK"
     gene            15799..16932
                     /gene="norW"
                     /locus_tag="JN125_000353"
     CDS             15799..16932
                     /gene="norW"
                     /locus_tag="JN125_000353"
                     /EC_number="1.18.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH:flavorubredoxin reductase NorW"
                     /protein_id="HAY8870248.1"
                     /translation="MSNGIVIIGSGFAARQLVKNIRKQDATIPLTLIAADSMDEYNKP
                     DLSHVISQGQRADDLTRQTAGEFAEQFNLHLFPQTRVTDIDAEARVVKSQNNQWQYDK
                     LVLATGASAFVPPVPGRELMLTLNSQQEYRACETQLRDARRVLIVGGGLIGSELAMDF
                     CRAGKAVTLIDNAASILASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGILA
                     TLDHQRSIEVDAVIAATGLRPETALARRAGLTINRGVCVDSYLQTSNDDIYALGDYAE
                     INGQVLPFLQPIQLSAMVLAKNLLGNNTPLKLPTMLVKIKTPELPLHLAGETQRQDLR
                     WQINTERQGMVARGVDDADQLRAFVVSEDRMKEAFGLLKTLPM"
     gene            complement(17060..19312)
                     /gene="hypF"
                     /locus_tag="JN125_000354"
     CDS             complement(17060..19312)
                     /gene="hypF"
                     /locus_tag="JN125_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HAY8870249.1"
                     /translation="MAKNTSCGVQLRIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGD
                     GVEVRLREDPETFLVQLHQHCPPLARIDSVEREPYIWSQLPTEFTIRQSAGGAMNTQI
                     VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCP
                     ACDKEYRDPLDRRFHAQPVACPECGPHLEWVSHGEHAEQEAALQAAIAQLKMGNIVAI
                     KGIGGFHLACDARNSNAVATLRARKHRPAKPLAVMLPVADGLPDAARQLLTTPAAPIV
                     LVDKKYVPELCDDIAPDLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISN
                     EQALADLQGIADGFLIHNRDIVQRMDDSVVRESGEMLRRSRGYVPDALALPPGFKNVP
                     PVLCLGADLKNTFCLVRGEQAVLSQHLGDLSDDGIQMQWREALRLMQNIYDFTPKYVV
                     HDAHPGYVSSQWAREMNLPTQTVLHHHAHAAACLAEHQWPLDGGDVIALTLDGIGMGK
                     NGALWGGECLRVNYRECEHLGGLPAVALPGGDLAAKQPWRNLLAQCLRFVPEWQNYPE
                     TASVQQQNWSVLARAIERGINAPLASSCGRLFDAVAAALGCAPATLSYEGEAACALEA
                     LAASCHGVTHPVTMPLVDNQLDLAAFWQQWLNWQAQVNQRAWAFHDALAQGFAALMRE
                     QATMRGITTLVFSGGVIHNRLLRARLSHYLADFTLLFPQSLPAGDGGLSLGQGVIAAA
                     RWLAGEVQNG"
     gene            complement(19465..19992)
                     /gene="hydN"
                     /locus_tag="JN125_000355"
     CDS             complement(19465..19992)
                     /gene="hydN"
                     /locus_tag="JN125_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport protein HydN"
                     /protein_id="HAY8870250.1"
                     /translation="MNRFIIADASKCIGCRTCEVACVVSHQENQDCASLTPETFLPRI
                     HVIKGVNISTATVCRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYG
                     AMEVVVRPVIRNSGAGLNVRADKAEANKCDLCNHREDGPACMAACPTHALICVDRNKL
                     EQLSAEKRRRTALMF"
     gene            complement(20141..21151)
                     /locus_tag="JN125_000356"
     CDS             complement(20141..21151)
                     /locus_tag="JN125_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417194.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HAY8870251.1"
                     /translation="MTTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESG
                     YRPNLLARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHS
                     AEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRKNSSHSVW
                     CDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALAQHGIALNEKLIA
                     NGKWTPASGAEGVETLLERGAKFSALVASNDDMAIGAMKALHERGVAVPEQVSVIGFD
                     DIAIAPYIVPALSSVKIPVTEMIQEIIGRLIFMLDGGDFSPPKTFSGKLIHRDSLIAL
                     SR"
     gene            21411..22811
                     /gene="ascF"
                     /locus_tag="JN125_000357"
     CDS             21411..22811
                     /gene="ascF"
                     /locus_tag="JN125_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS cellobiose/arbutin/salicin transporter
                     subunit IIBC"
                     /protein_id="HAY8870252.1"
                     /translation="MAKNYAALARSVIAALGGVDNISAVTHCMTRLRFVIKDDQLIDS
                     PTLKTIPGVLGVVRSDNQCQVIIGNTVSQAFQEVVSLLPGDMQPAQPVGKPKLTLRRI
                     GAGILDALIGTMSPLIPAIIGGSMVKLLAMILEMSGVLTKGSPTLTILNVIGDGAFFF
                     LPLMVAASAAIKFKTNMSLAIAIAGVLVHPSFIELMAKAAQGEHVEFALIPVTAVKYT
                     YTAIPALVMTWCLSYIERWVDRITPAVTKNFLKPMLIVLIAAPLAILLIGPIGIWIGS
                     AISALVYTIHGYLGWLSVAIMGALWPLLVMTGMHRVFTPTIIQTIAETGKEGMVMPSE
                     IGANLSLGGSSLAVAWKTKKPELRQTALAAAASAIMAGISEPALYGVAIRLKRPLIAS
                     LISGFICGAVAGMAGLASHSMAAPGLFTSVQFFDPANPMSIVWVFAVMALAVVLSFIL
                     TLLLGFEDIPVEEAAA"
     gene            22877..24301
                     /locus_tag="JN125_000358"
     CDS             22877..24301
                     /locus_tag="JN125_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HAY8870253.1"
                     /translation="MSVFPEGFLWGGALAANQSEGAFREGGKGLTTVDMIPHGEHRMA
                     VKLGLEKRFQLRDDEFYPSHEATDFYHRYKEDIALMAEMGFKVFRTSIAWSRLFPQGD
                     EITPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPMHLVTEYGSWRNRKLVEFFSRY
                     ARTCFEAFDGLVKYWLTFNEINIMLHSPFSGAGLVFEEGENQDQVKYQAAHHQLVASA
                     LAAKIAHEVNPQNQVGCMLAGGNFYPYSCKPEDVWAALEKDRENLFFIDVQARGAYPA
                     YSARVFREKGVTIDKALGDDEILKNTVDFVSFSYYASRCASAEMNANNSSAANVVKSL
                     RNPYLQVSDWGWGIDPLGLRITMNMMYDRYQKPLFLVENGLGAKDELAANGEINDDYR
                     ISYLREHIRAMGEAIADGIPLMGYTTWGCIDLVSASTGEMSKRYGFVYVDRDDAGNGT
                     LTRTRKKSFWWYKKVIASNGEDLE"
     gene            complement(24460..24930)
                     /gene="hycI"
                     /locus_tag="JN125_000359"
     CDS             complement(24460..24930)
                     /gene="hycI"
                     /locus_tag="JN125_000359"
                     /EC_number="3.4.23.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation peptidase HycI"
                     /protein_id="HAY8870254.1"
                     /translation="MTDVLLCVGNSMMGDDGAGPLLAEKCAAAPKGNWVVIDGGSAPE
                     NDIVAIRELRPTRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLK
                     EDIGEVIFLGIQPDIVGFYYPMTQPIKDAVETVYQRLEGWEGNGGFAQLAVEEE"
     gene            complement(24923..25333)
                     /locus_tag="JN125_000360"
     CDS             complement(24923..25333)
                     /locus_tag="JN125_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HycH family protein"
                     /protein_id="HAY8870255.1"
                     /translation="MSEKVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDC
                     LEAALTCPWDEYLAWIATLEAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAA
                     QTSQQQEWSTMLLSMLHDIHQENAIYLMVRRLRD"
     gene            complement(25330..26008)
                     /locus_tag="JN125_000361"
                     /pseudo
     CDS             complement(25330..26008)
                     /locus_tag="JN125_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417199.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B family
                     protein"
     gene            complement(26008..26550)
                     /gene="hycF"
                     /locus_tag="JN125_000362"
     CDS             complement(26008..26550)
                     /gene="hycF"
                     /locus_tag="JN125_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit HycF"
                     /protein_id="HAY8870256.1"
                     /translation="MFTFIKKVIKTGTATSSYPLEPIAVDKNFRGKPEQNPQQCIGCA
                     ACVNACPSNALTVETDLATGELAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWK
                     KEDFLQQSRFALCNCRVCNHPFAVQKEIDYAIALLKHNGDSRAENHRESFETCPECKR
                     QKCQVPSDRIELTRHMKEAI"
     gene            complement(26560..28269)
                     /locus_tag="JN125_000363"
     CDS             complement(26560..28269)
                     /locus_tag="JN125_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase large subunit"
                     /protein_id="HAY8870257.1"
                     /translation="MSEEKLGQHYLAALNEAFPGVVLDHAWQTKDQLTITVKVNYLPE
                     VVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWVTVRVEVDANKPEYP
                     SVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPA
                     PTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHR
                     GMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILL
                     EVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIR
                     RDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTIGIGRLDPEIARDFSNVGP
                     MVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLD
                     NLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT
                     LRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKNS
                     PLK"
     gene            complement(28287..29210)
                     /gene="hycD"
                     /locus_tag="JN125_000364"
     CDS             complement(28287..29210)
                     /gene="hycD"
                     /locus_tag="JN125_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit HycD"
                     /protein_id="HAY8870258.1"
                     /translation="MSVLYPLIQALVLFAVAPLLSGITRVARARLHNRRGPGVLQEYR
                     DIIKLLGRQSVGPDASGWVFRLTPYVMVGVMLTIATALPVVTVGSPLPQLGDLITLLY
                     LFAIARFFFAISGLDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQVAGSTNISNI
                     TDTVYHWPLSQSIPLVLALCTCAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFG
                     VMKWGISLKQLVVLQMFVGVFIPWGQMETFTAGGLLLALVIAIVKLVVGVLVIALFEN
                     SMARLRLDITPRITWAGFGFAFLAFVSLLAA"
     gene            complement(29213..30956)
                     /gene="hycC"
                     /locus_tag="JN125_000365"
                     /pseudo
     CDS             complement(29213..30956)
                     /gene="hycC"
                     /locus_tag="JN125_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311606.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase subunit 3"
     gene            complement(30953..31564)
                     /locus_tag="JN125_000366"
     CDS             complement(30953..31564)
                     /locus_tag="JN125_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HAY8870259.1"
                     /translation="MNRFVIADSTLCIGCHTCEAACSETHRQHGLQSMPRLRVMLNEK
                     ESAPQLCHHCEDAPCAVVCPVNVITRVDGAVQLNESLCVSCKLCGIACPFGAIEFSGS
                     RPLDIPANANTPKAPPAPPAPARISTLLDWVPGIRAIAVKCDLCSFDEQGPACVRMCP
                     TKALHLVDNTDIARVSKRKRELTFNTDFGDLTLFQQAQSGEAK"
     gene            complement(31689..32150)
                     /gene="hycA"
                     /locus_tag="JN125_000367"
     CDS             complement(31689..32150)
                     /gene="hycA"
                     /locus_tag="JN125_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase regulator HycA"
                     /protein_id="HAY8870260.1"
                     /translation="MTIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHH
                     AMSCAPDKELCFVLFEHFRIYVTLADGFNSHTIEYYVETKEGEDKQRIAQAQLSIDGM
                     IDGKVNIRDREQVLEHYLEKIAGVYDSLYTAIENNVPVNLSQLVKGQSPAA"
     gene            32362..32712
                     /gene="hypA"
                     /locus_tag="JN125_000368"
     CDS             32362..32712
                     /gene="hypA"
                     /locus_tag="JN125_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HAY8870261.1"
                     /translation="MHEITLCQWALELIEQQAAKHGAKRVTGVWLKIGAFSCVETSSL
                     AFCFDLVCRGSVAEGCKLHLEEQEVECWCETCQQYVTLLTQRVRRCPQCHGDMLQIVA
                     DDGLQIRRIEIDQE"
     gene            32716..33588
                     /gene="hypB"
                     /locus_tag="JN125_000369"
     CDS             32716..33588
                     /gene="hypB"
                     /locus_tag="JN125_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HAY8870262.1"
                     /translation="MCTTCGCGEGNLYIEGDEHNPHSAFRSAPFAPAARPKMKITGIK
                     APEFTPSQTEEGDLHYGHGEAGTHAPGMSQRRMLEVEIDVLDKNNRLAERNRARFAAR
                     KQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQV
                     NTGKGCHLDAQMIADAAPRLPLDDNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEG
                     EDKPLKYPHMFAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEG
                     MDQWLNWLETQRCA"
     gene            33579..33851
                     /gene="hypC"
                     /locus_tag="JN125_000370"
     CDS             33579..33851
                     /gene="hypC"
                     /locus_tag="JN125_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 3 maturation protein HypC"
                     /protein_id="HAY8870263.1"
                     /translation="MCIGVPGQIRTIDGNQAKVDVCGIQRDVDLTLVGSCDENGQPRV
                     GQWVLVHVGFAMSVITEAEARDTLDALQNMFDVEPDVGALLYGEEK"
     gene            33851..34972
                     /gene="hypD"
                     /locus_tag="JN125_000371"
     CDS             33851..34972
                     /gene="hypD"
                     /locus_tag="JN125_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HAY8870264.1"
                     /translation="MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGH
                     THAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRV
                     PGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQ
                     AKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDF
                     HRPLVVAGFEPLDLLQGVVMLVEQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCV
                     NGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPH
                     QCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQESEA"
     gene            34969..35979
                     /gene="hypE"
                     /locus_tag="JN125_000372"
     CDS             34969..35979
                     /gene="hypE"
                     /locus_tag="JN125_000372"
                     /EC_number="4.2.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311613.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation carbamoyl dehydratase
                     HypE"
                     /protein_id="HAY8870265.1"
                     /translation="MNNIQLAHGSGGQAMQQLINSLFMEAFANPWLAEQEDQARLDLA
                     QLVAEGDRLAFSTDSYVIDPLFFPGGNIGKLAICGTANDVAVSGAIPCYLSCGFILEE
                     GLPMETLKAVVTSMAETARTAGIAIVTGDTKVVQRGAADKLFINTAGMGAIPANIHWG
                     AQTLTAGDVLLVSGTLGDHGATILNLREQLGLDGELVSDCAVLTPLIQTLRDIPGVKA
                     LRDATRGGVNAVVHEFAAACGCGIEISESALPVKPAVRGVCELLGLDALNFANEGKLV
                     IAVERNAAEQVLAALHSHPLGKDAALIGEVVERKGVRLAGLYGVKRTLDLPHAEPLPR
                     IC"
     gene            36053..38130
                     /gene="flhA"
                     /locus_tag="JN125_000373"
                     /pseudo
     CDS             36053..38130
                     /gene="flhA"
                     /locus_tag="JN125_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311614.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="formate hydrogenlyase transcriptional activator
                     FlhA"
     gene            complement(38167..38520)
                     /locus_tag="JN125_000374"
     CDS             complement(38167..38520)
                     /locus_tag="JN125_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrous oxide-stimulated promoter family
                     protein"
                     /protein_id="HAY8870266.1"
                     /translation="MSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYEALFVYAQKR
                     LDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAGPRMLWRHPILTVRHLIDDKRP
                     VPELPEKYRPKKPRE"
     gene            complement(38597..38731)
                     /locus_tag="JN125_000375"
     CDS             complement(38597..38731)
                     /locus_tag="JN125_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870267.1"
                     /translation="MIPELIISGEEANGEFLMLVPGKMLFCSFCVMLMKQVRKIASVE
                     "
     gene            38807..41368
                     /gene="mutS"
                     /locus_tag="JN125_000376"
     CDS             38807..41368
                     /gene="mutS"
                     /locus_tag="JN125_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HAY8870268.1"
                     /translation="MSAIENFDAHTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDA
                     KRASQLLDISLTKRGASAGEPIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPATS
                     KGPVERKVVRIVTPGTISDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEP
                     ADRETMAAELQRTNPAELLYAEDFAEMSLIEGRRGLRRRPLWEFEIDTARQQLNLQFG
                     TRDLVGFGVENAPRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRN
                     LEITQNLAGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDF
                     TAGLQPVLRQVGDLERILARLALRTARPRDLARMRHAFQQLPELRAQLETVDSAPVQA
                     LREKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERL
                     EVRERERTGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKE
                     YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLN
                     YTCPTFIDKPGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKSTYM
                     RQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILH
                     NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKME
                     DVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELES
                     ISPNAAATQVDGTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKSLV"
     gene            41474..42131
                     /gene="pphB"
                     /locus_tag="JN125_000377"
                     /pseudo
     CDS             41474..42131
                     /gene="pphB"
                     /locus_tag="JN125_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311617.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="protein-serine/threonine phosphatase"
BASE COUNT         9961 a        11604 c        11020 g         9594 t
ORIGIN      
        1 ttactttact gcagattttt tgataccgct actaaagccg tatcaagtaa gagatggtgc
       61 attcgggagg attactcgcc ttgcggctcg cccttcgggt cgttgctaaa gcaacgttat
      121 cctccctagt gcctgcggtt ataccgccac ctcttccata ccttcatcgc tgaaagtacg
      181 tagaatatgg tgcatccggg aggattcgaa cctccgaccg ctcggttcgt agccgagtac
      241 tctatccagc tgagctacgg atgcaaatgg cggtgaggcg gggattcgaa ccccggatgc
      301 agcttttgac cgcatactcc cttagcaggg gagcgccttc agcctctcgg ccacctcacc
      361 acacgcctct tacgagtgct tcgaagaact tgtttatcgc tcatcgtcgc tgcgtggcgc
      421 acatattact ttctgagact tataagtcaa acaatttttc ccacactttt atcgtttgca
      481 cacttcacgc tcaattagtc tgtaaaaacg tcaaaaagag tgttttatct acagaaaaac
      541 ggaggtctgg cagatagcag taatgcaaaa aaatggagac ttaagttgaa tgaacgggag
      601 taaagcgaaa agactataga gtgaaggaga aattttgagg gtgcgtctca ccgataaaga
      661 tgagacgcgg aaagattagt aactggactg ctgggatttt tcagcctgga tacgctggta
      721 gatctcttca cggtgaacag aaacttcctt cggggcattt acgccaatac gtacctggtt
      781 gcccttcacc cctaaaactg tcacggtgac ctcatcccca atcatgaggg tctcaccaac
      841 tcgacgagtc agaatcagca ttctttgctc cttgaaagat taaaagagtc gggtctctct
      901 gtatcccggc attatccatc atataacgcc aaaaagtaag caatgacaaa cacattacat
      961 gtaagcagtc atggcattac attctgttaa acctaagttt agccgatata cacaacttca
     1021 acctgacttt atcgttgtcg atagcgttaa tgcgaatgcc gtgaagcgag tccacggcat
     1081 tgcctgacgc ttatattatt gcaatttcgc gctgacccag cctttcacac tggctaacgc
     1141 tgcaggtaag gccgcagcat ccgtaccacc ggcttgcgcc atgtcaggac gtccaccacc
     1201 cttgccgccc acctgctgag cgaccatacc aatcagttcc cctgctttca cacgatctgt
     1261 gacgtcctta gatacgcctg caatcagaga aaccttacct tcggctaccg ttgccagcac
     1321 gataattgtc gaccccagct gattttttaa atcgtcaacc atggtacgca acattttcgg
     1381 ctcaacaccg ctaagctcgc taaccaacag cttaacacca ttaacatcaa ttgccttact
     1441 ggaaagattt gcgctctcct gtgcggcagc ttgttcttta agctgttgta gttctttttc
     1501 taactgacgc gtacgttcca gtactgagcg cactttatcc gccagattat tgctatcgcc
     1561 tttcagcaga tgcgcgactt cgcttaagcg atcgctgtct gcatgaacgg tggtgatagc
     1621 gccttctccg gttaccgctt cgatacgacg aacgcctgca gcagtacccg attcagagat
     1681 gatgcggaac agaccaatat caccagtgcg gctggcgtga gtaccgccac acagctcggt
     1741 ggagaaatcg cccatgctca gcacgcgtac acgctcatca tacttctcgc cgaacagcgc
     1801 catcgcacct ttcgctttcg ccgcttcgag atccatgatg ttggtttcga tcggcaaatt
     1861 gcgacgaatc tgtgcgttca ccaggtcttc gaccacacga atctcttccg gtttcatcgc
     1921 ttcgttgtgt gagaagtcga agcgcagcac cttgtcgtta accagtgaac ctttctgcga
     1981 tacatgagtc cccagaacct ggcgcagcgc agcgtgcatc aggtgcgttg cggagtgatt
     2041 cagacgaata cgggcgcgac gagcctcatc aacatcagcc tgcacagcgt cgcccacttt
     2101 cagagaaccc gcagcaagtt taccgatgtg accaatcgcc tggccgtatt tctgcgtatc
     2161 ttccaccgcg aaggagaagt tagcgccttt cagttcgcct ttatcaccaa cctgaccgcc
     2221 ggattccgca tagaatggtg tttgatctag cacgaccaca gcttcctggc ctgcattgat
     2281 ggcatcaacc gctttaccat caacaaacag cgcggtcact ttgccgttca gttccagatg
     2341 gtcatagcct ttaaattcag atgcactatc aacacggatc attgcgttgt aatcggcacc
     2401 aaagccgctg gcttcgcgcg cgcgacgacg ctgctcttcc attgctgctt caaaaccagc
     2461 ttcgtcaact ttgatgttgc gctcacgaca aacatcagcc gtcaggtcaa ccgggaagcc
     2521 ataggtgtcg tacagacgga aagccgtttc accatccagc gtatcaccag aaagttttgc
     2581 cagctcttca tccagcaacg ccagaccgcg ctccagagta cgggcaaact gctcttcttc
     2641 agtcttcagc acctgctcaa cctgcgcctg ctggcgtttc aggtcttcac ccgcagagcc
     2701 cataacgtcg atcagcggac caaccagttt gtagaagaag gtttctttcg cgccgagcat
     2761 attgccgtga cgcactgcgc gacgaatgat acgacgcagt acataaccac ggttttcatt
     2821 ggacggcatt acgccatccg cgatcaggaa cgcacaagaa cgaatgtggt cagcgattac
     2881 gcgcagcgat ttattgctca gatcggtcgc gccagtgact ttcgctaccg cctggatcaa
     2941 cgtgcggaac aggtcgatgt catagttaga gttaacgtgt tgcagcaccg cagcaatacg
     3001 ctccagaccc ataccggtat ctacagacgg cttcggcagc ggttccatcg tgccatctgc
     3061 ctggcggttg aactgcatga agacgatgtt ccagatctca atgtagcggt cgccgtcttc
     3121 ttccggactt cccggagggc caccccaaat gtggtcgccg tgatcgtaga agatttcggt
     3181 gcacgggccg cacggaccag tgtcacccat ctgccagaag ttgtcagatg cgtatggcgc
     3241 acctttgtta tcgccgatgc gaataatacg ttcgcgcggg atcccgactt ctttttccca
     3301 gatttcgtag gcttcgtcgt cgctttcata gacggtaacc cacagacgct ctttcggcag
     3361 ggcaaaccat ttttcgctgg tcagcagttc ccatgcaaac tgaatggcat cgtgtttgaa
     3421 atagtcgccg aagctgaagt tgcccagcat ttcgaagaag gtatggtgac gcgcggtgta
     3481 accgacgttt tccaggtcgt tgtgtttacc acccgcacgc acgcagcgtt gggaagtggt
     3541 agcgcgggaa taattacgct tgtcgagccc aaggaacaca tccttgaact gattcatccc
     3601 ggcgttggta aacaacaaag ttgggtcgtt atggggtacc agggagctgc tggcaactac
     3661 ctgatgtccc ttactatgga aaaagtcgag aaacgcctga cggatctcag cggtgctctt
     3721 gctcataatt atcctgaaat caagctaacg aaatatcgcc accagctcca gcgtgtctta
     3781 accgccgggc tggtaactga aaagtgggaa taagataagt tttcttgact gggaagtaaa
     3841 ataccgtatg cgttcagtcg gcaaaatttc gccaaatatc ctggatatct tccatcagat
     3901 agccacgata gagcagaaaa cgctggatct taactttttc tgaaaagaca gttggcaaag
     3961 gttcaccata ttttcgcgtc gcctgatcgc gcgccagtgc gcaccagtcg atgtcacatt
     4021 cacgcatcgc tttttctgtc gcttcgcggg aaataccttt ctgattcagt tcctgacgaa
     4081 tacgtgcagg tccataacct ttgcggctac ggctggcgat aaagcgcgca acaaatcggc
     4141 tgtcatcgag atagccatgt tcatggcacc aggcaataac gcgctcgtaa tcttctgccg
     4201 tagcatcaat ctcttctggg ccatttttgc ccataatcgg tgccgcgagt ttacgtcgca
     4261 gttcttgctc actgtgatcg cgcaccgcca gaatgtgtac cgcacgatcc aacaggcgag
     4321 catatgccgg gcgacgggac gttgattctg tcatggcata tccttacaac ttaaaaaagc
     4381 aaaagggccg cagatgcgac ccaggttttg ctgataaaca gatttaatag tcaatgagtg
     4441 tgcagaatgt tcccgcaggc ccaattcgtt agaggatcga ggtgagagta atttttcacg
     4501 ccagtgctgg cctgttcccc tcaccctaac cctctcccca aaggggcgag gggaccgtcc
     4561 gtgcacacat tatctattat catcaataac gaacgattaa aaatcttcgt tagtttctgc
     4621 tacgccttcg ctgtcatcta cagagaaatc cggcgttgag ttcgggttgc tcagcagcaa
     4681 ctcacgtact ttcttctcga tctctttcgc ggtttccggg ttatctttca gccaggcagt
     4741 tgcattcgct ttaccctgac cgatcttctc acctttgtag ctgtaccacg cgcctgcttt
     4801 ctcgatcagc ttctctttta cgcccaggtc aaccagttcg ccgtagaagt tgataccttc
     4861 gccgtagagg atctgaaatt cagcctgttt aaacggtgca gcgattttgt tcttcaccac
     4921 tttcacgcgg gtttcgctac ccaccacgtt ttcgccctct ttcaccgcgc cgatacgacg
     4981 gatgtcgaga cgaacagagg cgtagaattt cagcgcgtta ccaccggtag tggtttccgg
     5041 gttaccgaac atcacaccaa ttttcatacg gatctggttg atgaagatca gcagcgtgtt
     5101 ggactgcttc aggttacccg ccagcttacg catcgcctgg ctcatcatac gtgccgcaag
     5161 gcccatgtga gagtcgccga tttcgccttc gatttccgct ttcggcgtca gtgccgccac
     5221 ggagtcaacg acgataacgt ctactgcacc agaacgcgcc agggcgtcac agatttccag
     5281 tgcctgctcg ccggtgtccg gctgggagca cagcaggttg tcgatatcga cgcccagttt
     5341 acgtgcgtag attgggtcca gcgcgtgttc agcatcgata aacgcacagg ttttaccttc
     5401 acgctgcgct gcggcgatca cctgcagcgt cagcgtggtt ttaccggaag attccggtcc
     5461 gtagatttcg acgatacggc ccatcggcag accacctgcc ccaagcgcga tatccagtga
     5521 aagcgaaccg gtagagatgg tttccacatc catggaacgg tcttcaccca ggcgcatgat
     5581 ggagccttta ccaaattgtt tctcaatctg gcccagtgct gccgccaacg ctttctgttt
     5641 gttttcgtcg atagccattt ttactcctgt catgccgggt aataccggat agtcaatatg
     5701 ttctgttgaa gtaattatac tgtatgctca tacagtatca agtgttttgt agaaattgtt
     5761 gccacaaggt ctgcaatgca tacgcagtag cctgacgacg caccgcatca cggtcgccgc
     5821 tgaagcattc ccgccgggta atgccttcac cgcgggcagt ggcaaaagca aaccagacgg
     5881 tgccgacagg cttctcttca ctgccgccat ccggcccggc gataccacta atagacacgg
     5941 cataatcagc acgagccgct ttcagtgcgc ctatcaccat ttccaccacg acgggttcac
     6001 tcaccgcgcc atgctgcgcc agcgtctctt cgcgtacgcc gatcatctgc gctttggctt
     6061 cgttactgta ggtgacaaat ccgcgttcaa accaggcgga gctatcggca atatcggtaa
     6121 tcactttcgc tacccaacca ccggtacaag actcggcagt tgttacggtt gcgccacggg
     6181 ctttcagcgc ctgcccaacc tgttcactta actgcatcag ttcactgtca gtcatcacaa
     6241 cctctgtcag tcaaaaattt atgccggaca agatagcact ttcgtcagga agatggtgtt
     6301 ggcgttgcaa ttttacgagg aggattcaga aaaaagctga ttagccagag ggaagctcac
     6361 gcccccctct tgcaaatagt tactgcacgc gcgccagcgc cacggcttgt cctaactgcc
     6421 agaccgccat tgcgtaatgg gtgctgtggt tataacgggt aatggtgtag aagttcggca
     6481 gaccgtacca gtactggtaa ccggtaccga catccagacg cagcaggctg gcttgttgat
     6541 ggttgcccag cggctgctgt ggcgttaaac ctgccgtggc aagctgcgaa atgctgtacc
     6601 tggttttgaa gccatttggc aagcctggag cctgaccgtt tgccattacc gcgacctgat
     6661 cgcctttcac ccagccgtgc gctttgaaat agttcgccac gctaccgatc gcatcaaccg
     6721 gatcccacag gttgatatgc ccgtcgccgc tgaaatctac cgcatattgt ttgtaagacg
     6781 acggcataaa ctgtccgtag cccatcgccc cggcaaagga acctttcaga ttgagcggat
     6841 cgtcctgctc gtcgcgcgcc atcagcagga aggtttccag ctcgccagag aaatactccg
     6901 cgcggcgtgg gtagttaaat gacagcgttg ccagcgcatc gaggatgcga gttttcccca
     6961 tcacgcgccc ccagcgggtt tcaacgccga taatcccgac gataatttcc ggcggtacgc
     7021 catacacctg ccacgcgcga ttcaacgcat cttcatactg attccagaaa accacaccgt
     7081 tctgcacgtt gtccggcgta ataaattttt tgcgataacg cagccatgcg ccgttcggac
     7141 ctgatggcgg tttcaccgat gtggttggtg cctggttatc catcagccgc agtaccgaat
     7201 ccagacgctt cgcctgggag agaatttcct gcaactgctg acgatcgaaa ccgtgtttgt
     7261 tcaccatttt gtcgatgaac tgctgggcat tcgggttatt agcgaaatcg ccgcccatct
     7321 gcatcacatt gtgctgcggc tcaagcagga agccgccaga cggcgttccg gtggtcgttt
     7381 cagtctcagt aggttttggc ttgctgctac aggcggcaag caacacaaaa aggggaagca
     7441 atgttacata acgacgcttg aacatgaggg ggccatttaa cagattcaac caggggcaag
     7501 tatggtaaag catcacgccc cgcacaagga agcggtagtc actgcccgat acggacttta
     7561 cataactcaa ctcattcccc tcgctatcct tttactcaaa ctttcaaatt aaaatattta
     7621 tctttcatct ttagatcaaa ataacacttt taaatctttc aatctgatta gattaggttg
     7681 ccgtttggta ataaaacaat aaatcctgaa ggagagaaca atgatagaaa ccattactca
     7741 tggtgcagag tggtttatcg ggctgttcca aaagggcgga gaggtgttta ccgggatggt
     7801 gaccggcatt cttccgctgt tgattagcct gctggttatc atgaacgcac tgattaattt
     7861 tatcggtcag catcgtattg aacgttttgc tcaacgttgc gccggtaacc ctgtttcccg
     7921 ttacctgctg ctaccgtgca ttggcacgtt tgtcttttgc aatccgatga ccttaagcct
     7981 gggtcgcttt atgccggaaa agtacaaacc cagctactac gcggcggcct cttatagctg
     8041 ccactcaatg aatggcctct ttccccatat caaccctggc gaactgtttg tttatcttgg
     8101 cattgccagc ggtctgacaa cgctgaacct gccacttggc ccactggcgg tgagctatct
     8161 gctggttggt ctggtcacca acttctttcg cggctgggtg accgatctga ccaccgccat
     8221 ttttgagaaa aagatgggca ttcaacttga acaaaaagtt cacctggcag gagcaacatc
     8281 atgacgcgta ttcggatcga aaaaggaacg ggtggctggg gcggcccgct tgagctggaa
     8341 gccacgccgg gcaaaaaaat cgtctatatc accgccggta cccggcctgc gattgttgac
     8401 aaactggcac aacttactgg ctggcaggct attgacggat ttaaagaagg tgaacccgcg
     8461 gaggcggaaa ttggtgtcgc ggtaatcgac tgtggcggca cattacgctg cggcatctat
     8521 ccgaaacgac gtattcccac cattaatatc cactcgacgg gcaagtccgg tccgctggcg
     8581 cagtacattg tggaagatat ttatgtctct ggcgtaaaag aagaaaacat cactgtagtg
     8641 ggtgatgcga caccacaacc ctcttccgtg ggacgtgact atgacaccag taagaaaatc
     8701 accgaacaaa gcgatggttt actggcgaag gtgggaatgg gcatggggtc cgccgttgcg
     8761 gtgctgtttc aatctggtcg tgacaccatc gacactgtat taaaaaccat tctgccgttt
     8821 atggcattcg tctcggcgct cattggcatc attatggctt ctggccttgg tgactggatt
     8881 gcccacggtc ttgctccgct ggcgagccat ccactgggtc tggtcatgct ggcgctcatc
     8941 tgctccttcc cactgctttc acctttcctc ggcccaggcg cagttatcgc acaggttatc
     9001 ggcgtattga ttggcgtgca gattggtctc ggcaatattc cgccgcatct ggctttaccg
     9061 gcactgtttg ccatcaacgc gcaggcggcc tgcgacttca tcccggtcgg tttgtcgctg
     9121 gcggaagccc gtcaggacac ggttcgcgtc ggtgtccctt ctgtactggt gagccgcttt
     9181 ttaaccggcg caccgactgt actgatcgcc tggtttgtct ccggttttat ctatcaatag
     9241 aggctgaaac atgaccgtta tttataagac caccatcacc cgtatcggcg cgagtgccac
     9301 tgacgccctc agcgaccaga tgctcatcac ctttcgtgaa ggcgcgccag cggacctcga
     9361 agagtattgc ttcattcatt gccacggcga gttgaaaggt gcactccatc ccggtttgca
     9421 atttacgctc gggcagcatc gctatccggt gaccgctgtt ggcagtgtgg cggaagacaa
     9481 ccttcgcgaa ctgggtcatg tcaccctgcg cttcgatggt ttaaacgaag cggaatttcc
     9541 gggcactgtc catgtggcag gccctgtacc cgacgatatc gcgccgggat cggttttgaa
     9601 gtttgaatct gttaaggagt aaaaaatgaa tcaggttgcc gttgtcatcg gtggtgggca
     9661 aaccttaggc gcgttcctgt gccacggtct ggttgccgag gggtatcgcg tcgcggttgt
     9721 cgatattcag agcgacaaag ccgcaaatgt ggcacaagaa attaacgccg aatatggtga
     9781 aagtatggcg tacggttttg gtgctgacgc cactagcgag caaagcgttc tggcgctctc
     9841 tcgtggggta gatgaaatct ttggtcgcgt ggatttgctg gtctatagcg ccggaatagc
     9901 aaaagcagcc tttatcagcg acttccagct cggcgatttt gaccgttcgc tacaagtgaa
     9961 tctggtgggt tatttcctgt gtgcccgtga attttcgcgt ttgatgatcc gcgacgggat
    10021 tcagggtcgc attattcaga tcaactcgaa atccggcaaa gtgggcagca aacacaactc
    10081 tggctacagc gcagcgaaat ttggtggcgt cgggctgact caatcactgg cgctggatct
    10141 ggcggagtac ggcattacgg tgcattcact gatgctcggt aacctgctga aatcgccgat
    10201 gttccagtca ctgttgccac aatacgcgac caagctgggt atcaaaccgg atcaagtcga
    10261 gcagtattac atcgacaaag taccgctcaa acgcggctgc gattatcaag atgtgctgaa
    10321 tatgctgctg ttctacgcca gtcctaaggc gtcgtactgc accggacagt cgatcaatgt
    10381 caccggcggt caggtgatgt tctgatcaac agcggagatc cattaaggat ctccgtgaga
    10441 ctatagaatg cctgatgcgc tacgctcatc aggcatacag gacttccgcc actacattaa
    10501 gggaaagtta tggtatccgc actcatcacc gtcgccgtta tcgcctggtg tgcgcaactg
    10561 gccttaggcg gctggcaaat ttctcgtttt aaccgtgcct tcgacacact atgccagcaa
    10621 gggcgggttg gcgtgggccg ttccagcggg cgctttaaac cgcgggtcgt ggtcgccatc
    10681 gcgctggacg atcagcagcg catcgtcgac accttgttta tgaaaggact gaccgtcttc
    10741 gcccgaccgc aaaaaattcc cgcaattacc ggtatgcatg cgggtgattt acagcccgat
    10801 gtgatctttc cccatgatcc actatcacag aatgctctat cattggcgct taaactgaaa
    10861 cgtggataat ttcgttgtga atgttacttg cttgcgaagt tatcattttg aaacctaaat
    10921 caggtaatca cgcccatgaa acctcgtcag cgtcaggccg ccattctgga gtatctgcaa
    10981 aagcagggta aatgctcggt tgaagaattg gcgcaatact ttgacaccac aggcacaacc
    11041 attcgcaaag atctggtcat tctggaacat gccggaaccg tcattcgtac ttatggcgga
    11101 gtggtgttga ataaagagga atccgatccg cctatcgatc ataaaacact catcaacacc
    11161 cacaagaaag agctgattgc agaagctgcc gttagtttta tccatgatgg cgattcgatc
    11221 attcttgatg ctggcagtac cgttttgcag atggttcccc tgctctcgcg ctttaataac
    11281 atcacggtga tgaccaacag cctgcatatc gtcaatgcgc tatccgaact ggataacgaa
    11341 caaactatcc tgatgccagg cggaacgttt cgtaaaaaat cggcctcatt tcacggacag
    11401 ctggcagaga atgccttcga acatttcagt ttcgataaat tgtttatggg caccgacggc
    11461 atcgatctca atgcgggcgt aaccaccttc aacgaggttt ataccgtcag taaggcaatg
    11521 tgcaatgccg cgcgcgaagt gattttgatg gcggactcat caaagtttgg ccgtaaaagc
    11581 cccaacgtag tttgcagtct tgaaagcgtc gataagctga ttaccgacgc aggtatcgat
    11641 ccggcgtttc gtcaggcgct ggaagagaaa gggatcgatg tgatcataac cggagagagc
    11701 aatgagtgaa gcactactga acgcgggacg tcagacgtta atgctggagt tgcaggaagc
    11761 aagccgttta ccggaacgtc tgggcgatga ttttgttcgc gccgccaata tcatcctgca
    11821 ctgcgaaggc aaagtggtgg tttcgggaat tggcaaatcg ggccacattg gtaagaaaat
    11881 cgccgcaaca cttgccagta ccggcacacc ggcttttttg tccatccggc agaagcactg
    11941 cacggcgatc tggggatgat tgaaagccgc gatgtgatgc tgtttatctc ttactccggt
    12001 ggcgcgaagg aactggatct gattattccg cgtctggaag ataaatctat cgcgctgctg
    12061 gcgatgaccg gcaaaccgac gtcaccgctg ggcctggcgg caaaagcggt gctggatatc
    12121 tccgtagaac gcgaagcctg cccgatgcac cttgcgccga cctccagcac cgtcaatacc
    12181 ctgatgatgg gtgacgcgct ggcgatggcg gtcatgcagg cgcgcggatt taatgaagaa
    12241 gattttgccc gctcccaccc agccggggca cagggcgctc gcttgctgaa taaagtgcat
    12301 catctgatgc gccgtgacga tgccatccca caggtggcgt taaccgccag cgtgatggat
    12361 gcgatgctgg aactcagccg caccggtctg gggctggtgg cggtatgtga cgctcaacaa
    12421 caggtacaag gcgtctttac cgacggcgat ttacgtcgct ggctggtagg cggcggcgca
    12481 ctcaccacgc cagttaatga agcgatgacg acaggcggca ccacgttaca ggcgcaaagt
    12541 cgcgccatcg acgccaaaga gatcctgatg aagcgcaaaa tcactgccgc accggtggtg
    12601 gatgaaaacg gcaaactcac cggcgcaatt aacctgcagg atttctatca ggccgggatt
    12661 atttaatcct tcattcccag acgtttcgcc agccgatgca ggttggcgac gtcggtttcc
    12721 agcatccgcg cgcaggcagc ccagttatga tgattttgtg ccagtgcctg gcgaatagtt
    12781 tcacgctgga acgcttctgt cgcttcacgc aggttttgct taacaacggg caccgccgcc
    12841 gcttctggcg gcggcaacgt cacctcagga aaagcaaaat gttgcgcctc aagaatcact
    12901 tcatcgccgt tgcgggtggc tctcgccagc actaccgccc gatgaatagc atgttccagt
    12961 tcgcgcacgt tccccggaaa acgatagtgt tgcagtaaat ttcgcgctcc ggcacttaat
    13021 accacgcggg agagccccag ccgcaaacga cactgttcgc agaaataccc cgccagcaga
    13081 atgacatcat cgccccgctc acgcagcggc ggcaccgaaa gtggaaacac gctcaggcga
    13141 tgaaacaagt cagcgcgaaa tcgccctgcc agcacctctt cgcgtaagtc gcggttagtc
    13201 gccgccagca cgcgcacatc gacccgcaaa ctacggtcat cgccaacgcg ctgaatatcg
    13261 ccatactgca acaccctcag cagcttggcc tgcaatgcca acgacaactc gccgatctca
    13321 tccagaaaca gagtgccgtt atccgccatt tcaaacttcc cgctgcggtt actgatagcg
    13381 ccagtaaacg ctcctttcac atgcccgaac aactcacttt ccgccacact ttccggcagt
    13441 gcagcacagt tgagatagac cagcggattc accgcccgtg gcgaggcttc atgaatcgct
    13501 ttcgccacca gctccttacc ggttcccgtc tcaccgctga tcaggacgtt gagatcggac
    13561 gccgccacaa tctcaatctc ttttttcagt tgcgtcatgc caggggacaa gccaatcatc
    13621 tgcgtctgtt tcaccgcttc aaacggcgtg gcatcgcctg gcatcatatt ctggctttcc
    13681 agttgttcaa tcagcaacgc attgcttaac gctcccgccg ccagcgcagc aatcagccgt
    13741 agctcttcgt cgctgaaaac atcgaactga tcgggctgca tcccgtcgag cgtcagtgcg
    13801 ccgatcaggt tttgcccggc aaacaatggc agaccaacgc aggcgtgaac cttcagactc
    13861 tcctgcccag gaatcaaacc gtcataggga tcgggcaatt cgctgtctgc gggaaagcgc
    13921 accacatccc cggcgcgggc aatcgcttcc agccgtggat gcccttccag cgcaaagcgt
    13981 ctaccgagta caccctttgc cagaccgtcg atggcaagcg gaataaactg ccgcgaatcg
    14041 taacgtagca acgcagacgc atcgcactcc agcacctgac gtagcgtggt gatcaggcgc
    14101 tgaaaacgat cctgatgacc aatcccacgc tgcaattcga tggcgatatt cgccagcaca
    14161 tcaacggaaa aactcatctt tgcctcactg tcaatttgac tatagatatt gtcatatcga
    14221 ccatttgatt gatagtcatt ttgactactc attaatgagc ataattttat ttatatagta
    14281 aaaacaatca gataaaaact ggcacgtaat ctgcaattag caagacatct ttttagaaca
    14341 cgctgaataa attgaggttg ctatgtctat tgtggtgaaa aataacattc attggggtgg
    14401 tcaacgtgac tgggaagtgc gtgattttca cggtacggaa tataaaacgc tgcgcggcag
    14461 cagttacaac agctacctca tccgcgaaga aaaaaacgtg ctgatcgaca ccgtcgacca
    14521 taaattcagc cgcgaatttg tgcagaacct gcgtaatgaa atcgatctgg cggatatcga
    14581 ttacatcgtg attaaccatg cagaagagga ccacgctggg gcgctgaccg aactgatggc
    14641 gcaaattccc gatacgccga tttactgtac tgccaacgct atcgactcga taaatggtca
    14701 tcaccatcat ccggagtgga attttaatgt ggtgaaaact ggtgacacgc tggatatcgg
    14761 caacggcaaa cagctcattt ttgtcgaaac gccaatgctg cactggccgg acagcatgat
    14821 gacttacctg acaggcgacg cggtgctgtt cagtaacgat gctttcggtc agcactactg
    14881 cgacgagcat ctgttcaacg atgaagtgga tcagacggag cttttcgagc agtgccagcg
    14941 ttactacgcc aatatcctga cgccgttcag ccgcctggta acaccgaaaa ttaccgagat
    15001 cctgggcttt aacttaccag tcgatatgat agcgacctct cacggcgtgg tatggcgcga
    15061 taacccgacg caaattgtcg agctgtacct gaaatgggcg gctgattatc aggaagacag
    15121 aatcaccatt ttctacgaca ccatgtcgaa taacacccgc atgatggctg acgctatcgc
    15181 ccaggggatt gcggaaaccg acccacgcgt ggcggtgaaa attttcaacg tcgcccgaag
    15241 cgataaaaac gaaatcctga ccaatgtctt ccgctcaaaa ggcgtgctgg tcggcacttc
    15301 gacgatgaat aacgtgatga tgccgaaaat cgccgggctg gtggaggaga tgactggttt
    15361 acgcttccgt aacaaacgcg ccagtgcttt cggctctcac ggctggagcg gcggtgcggt
    15421 ggatcgtctt tccacgcgcc tgcaggatgc gggtttcgaa atgtcgctta gcctgaaagc
    15481 gaaatggcga ccagaccagg acgctctgga gttatgccgt gaacacggtc gcgaaatcgc
    15541 ccgtcagtgg gcgctcgagc cgctgccgca gagcacggtg aataaggtag tcaaagaaga
    15601 aacctctgcc accacgacgg ctgacctcgg cccacggatg cagtgcagcg tctgccagtg
    15661 gatttacgat ccggcaaaag gcgagccaat gcaggacgtt gcgccaggaa cgccgtggag
    15721 tgaagtcccg gataacttcc tctgcccgga atgctccctc ggcaaagacg tctttgaaga
    15781 actggcatcg gaggcaaaat gagtaacggc attgtgatca tcggttcggg cttcgccgcc
    15841 cgccaactgg tgaaaaatat tcgcaaacag gacgccacta ttccattaac cctgattgcc
    15901 gccgacagca tggatgagta caacaaacct gacctcagcc atgttatcag tcaggggcaa
    15961 cgtgccgatg accttacccg ccagacggcg ggtgaatttg ccgagcagtt taatctgcac
    16021 ctgtttccac aaaccagggt gacggatatc gatgccgaag cccgtgtggt gaaaagccag
    16081 aataatcagt ggcaatacga caagctagta ctggcaaccg gtgccagtgc ctttgtcccg
    16141 cctgtgcctg ggcgtgagtt aatgctgacg ttaaatagtc agcaagagta tcgcgcctgt
    16201 gaaacgcaac tgcgggatgc ccgacgcgtg ttgattgttg gcggtggttt gattggtagc
    16261 gaactggcga tggatttttg tcgtgcaggc aaagcggtca cgctaatcga caacgctgcc
    16321 agtattctgg cgtcgttaat gccaccggaa gtaagcagcc gcttgcagca tcggttgacg
    16381 gaaatgggcg ttcatctgct gttgaaatct cagttacagg ggctggaaaa aacggattct
    16441 ggcattctgg caacgctgga ccaccagcgt agtatcgaag tggatgcggt aattgccgcc
    16501 accggactgc gcccggaaac agccctggca cgacgcgccg ggctgacgat taatcgcggc
    16561 gtttgcgtcg atagttatct gcaaaccagt aatgacgata tttatgcgct gggcgattac
    16621 gcggaaatca acggtcaggt actgccattc ctgcagccga ttcaacttag cgcgatggtg
    16681 ctggcaaaaa atcttctcgg caataacacg ccgctgaaac taccgacgat gctggtgaaa
    16741 atcaaaacgc cggaattacc gctgcatctg gcaggcgaaa cccagcgtca ggatttacgc
    16801 tggcaaatta ataccgaacg ccagggaatg gtggctcgcg gtgttgacga tgctgaccag
    16861 cttcgcgcct ttgtggtcag tgaggatcgg atgaaagagg catttggatt gttgaaaaca
    16921 ttgccgatgt aggtgggcta ctgtgcctaa aatgtcggat gcgacgctag cgcgtcttat
    16981 ccgacctacg gggacgcatg tgtaggccgg atcaggcgtt tacgccgcat ccggcaatgg
    17041 tgtccaaatg caacacgttt tatccgttct ggacttcacc cgctaaccaa cgcgccgcag
    17101 caataacccc ctgccccaga gacaaaccgc catcacccgc cggtaaactc tgaggaaaga
    17161 gcaatgtgaa atcagcgaga taatgcgaca gacgtgcacg cagcaaacgg ttatgaataa
    17221 ccccgccgct aaataccagc gtagtgatac cacgcatcgt ggcctgctca cgcatcaacg
    17281 cggcaaaacc ctgcgccagc gcatcatgaa acgcccacgc gcgttgatta acctgtgcct
    17341 gccagttcag ccactgctgc cagaaagcgg cgagatccag ttgattgtcc accagcggca
    17401 tcgtcaccgg atgcgtcact ccgtggcatg aggctgcgag cgcctccaga gcacaagccg
    17461 cttcaccttc ataacttaac gtggctggcg cacagcccag tgccgccgcc actgcatcga
    17521 acaaccgccc acacgatgac gccagcggcg cgttaattcc acgctcaatg gcccgcgcca
    17581 gcacgctcca gttttgctgt tgcacacttg ctgtttcagg gtaattctgc cactccggca
    17641 caaagcgcag gcactgcgcc agcaggtttc gccacggctg cttcgctgcc aaatcgccac
    17701 ccggaagcgc cactgcaggc aagccgccca ggtgctcaca ttcgcgatag ttcacccgca
    17761 ggcactcgcc gccccacaaa gcgccgttct tccccatacc gataccgtcg agcgtcaaag
    17821 caatgacatc accgccatcc agcggccact gatgctctgc cagacacgcc gctgcatggg
    17881 catgatgatg cagtaccgtt tgcgtcggca gattcatttc acgcgcccac tggctggaga
    17941 catagcccgg atgcgcgtca tgcacaacgt atttcggggt aaaatcgtag atgttttgca
    18001 tcaggcgtaa cgcttcgcgc cactgcatct ggatgccatc gtcacttaaa tcgcccagat
    18061 gctgactcaa caccgcttgt tcaccgcgca ccaggcagaa ggtatttttc agatccgctc
    18121 cgagacacag cacaggcgga acatttttaa agcccggagg caaagccagc gcatccggca
    18181 catacccccg cgaacggcgc agcatttcgc cgctttcgcg caccaccgaa tcatccatcc
    18241 gctgcacgat gtcgcggtta tgtatcaaga atccgtcggc aatgccctgc aaatccgcca
    18301 gcgcctgttc gttgctgata gctggtggtt taccgctcag gttgccggag gtcatcacca
    18361 gcgggcattg cagttcctgt aacagcaaat gctggagcgg gttcgcaggc aacattaccc
    18421 cgacttcgtt aaggtcaggg gcgatatcat cacaaagctc aggaacgtat tttttatcca
    18481 ccagcacaat cggcgcggcg ggcgtggtaa gcaactggcg cgcagcgtct ggtaaaccgt
    18541 cagccactgg caacatgacc gccagcggtt tcgccgggcg atgtttgcgc gcccgaagtg
    18601 tcgccaccgc gttactgtta cgtgcatcgc aggcaagatg aaatccgcca atccctttga
    18661 tggcgacaat gttgcccatt tttaactgtg cgatagccgc ctgtaatgcc gcctcttgtt
    18721 ctgcatgttc accatgactt acccattcaa gatgcgggcc acactctggg caggccaccg
    18781 gctgggcgtg gaagcgacga tcgagcgggt cgcggtactc tttgtcacaa gccggacaca
    18841 acggaaacgc cgccatcacg gtaaacgggc ggtcgtaagg catggcgcga ataatggtga
    18901 aacgcgggcc gcagtgggta cagttgataa acggataacg ataacgccgt tcgcctgggg
    18961 tattcatttc ggcaaggcaa gcagggcaag tagcggcatc cgggacaatt tgcgtattca
    19021 tggcacctcc cgcgctctgg cggatggtga actcagtggg cagttgtgac cagatgtacg
    19081 gctcacgctc gacgctatca atacgcgcca gcggcgggca gtgctgatgc aattgaacaa
    19141 gaaacgtttc cgggtcttcc cgcagccgga cttctacgcc atcgccgtca ttacagacat
    19201 cgccgtgaag atttaattgc tgtgccagct gccagacaaa cggacgaaaa ccgacgccct
    19261 gcactttgcc acgaatacgc agttggacac cgcaagatgt gttttttgcc attgagttat
    19321 tcccgccatc atgaattgcg taacccgccc agccggacac gacagcgtcg catccggcag
    19381 tcacaggtcg gcgataccgc ccgctccgta ttctacgaat atttccggga attcctttga
    19441 tgccagaaca gttctgtaag atttttagaa catcagcgcc gtacggcggc gtttttctgc
    19501 actcagttgt tcaagtttat tacgatcgac acaaatcagc gcatgagtcg ggcaagccgc
    19561 catacacgcc gggccgtctt cacgatggtt gcacaggtca catttattgg cttcggcttt
    19621 gtcagcccgt acattcagcc ccgcgccgct gttgcgaatc accggacgta ccaccacttc
    19681 catcgcgcca tacgggcaag ccacaacgca ggttttgcaa ccaatgcaac gttcctgcat
    19741 cacatgaaca aaccctttat cacggctgat agcaccattc gggcagacgt tagcgcacgg
    19801 tgcatcttca cactgacggc aaactgtcgc cgtggaaatg ttcacacctt taatgacatg
    19861 gatacgcggt aaaaatgttt ccggggtcag cgatgcacag tcctgatttt cctgatgaga
    19921 aaccacgcac gccacttcac aggtacggca accaatacat ttactcgcgt cagcaatgat
    19981 gaaacggttc atcaaattct ccagcaatga cagttaatgc gccgatacat tcacaaatca
    20041 tgccagtttt taattcactg ttatttaagg aaattaattt ctgtaatgca ggaaaaaaga
    20101 tgtcatcgac actagtgacg atgacatgtg atgacaatgt ttatcgcgaa agagcaatga
    20161 gtgagtcgcg gtggatcagt tttccgctga aggttttcgg cggtgagaaa tccccgccat
    20221 cgagcataaa aatcagccgt ccaataattt cctgaatcat ctcagtcacc ggaattttta
    20281 cgctggagag cgccggaacg atataggggg caattgcgat atcatcgaat ccgataactg
    20341 acacctgctc tggcaccgct acgccgcgct cgtgcaacgc tttcatcgca cctatcgcca
    20401 tatcgtcgtt actggcaact aacgcgctaa atttagcccc acgttcgagc aacgtttcta
    20461 ccccttcggc cccgctggcg ggcgtccatt taccgttagc gataagtttt tcattgagcg
    20521 caataccatg ctgcgccagc gcgtctttat acccagcaag acgttcaatg ctggtggggg
    20581 aatccatcga gccggtaagg aaagcaatct cctgatgtcc ggcgtttatc aactctgcca
    20641 cggcattaaa gctggtctgt ttatgatcgc accagacgct atggctgctg tttttgcgca
    20701 ggcggcgatt aagcaccatt atcggctgac tgtgcgcgtc aatgatgtca tcgatctcat
    20761 ccacgcttaa aaaacgcggg taaatcataa tggcgtcgca gcgcaaatcc agcagatact
    20821 gaatcgcctg gcgctcttct tcggcgctgt gtttaccatc tgccaatagc aactgccgcc
    20881 ctttctcttc cgccattcgc gcggcatgaa agagtaattc actaaaataa atgccgtggt
    20941 aaagcgtgtt ggtcactacc agccccagcg tctgagtact cttcgccgac agattgcgcg
    21001 ccagcaagtt tgggcggtaa ccgctctctt ctaccgcctg aaacacgcga tctttagtct
    21061 cctggctgac gtagccatta cctgaaagca cgcgggaaac ggtcgctttt gaaaccccgg
    21121 cgcgcttcgc cacttccagc atcgtcgtca tcattttcat ccctttacac gcaatcaacg
    21181 cagtgtactg caccgtttgc cgattgtcct tgcgcaatcg gcgggaaaaa tattcaggtg
    21241 accggtttca caaatataaa aaatgaataa ttaactctct tgcttattta gtgacaagta
    21301 ttcatgattt tgtgaaaccg gtttcctaat tccgtttcag catcggcatt tttccgttac
    21361 gtcgactgat aacaactaca tctaccctac tgataacagg ataaaatccg atggccaaaa
    21421 attatgcggc gctggcacgc tcggtgatag cggcactggg cggcgttgat aacatctcgg
    21481 cggtcacgca ctgtatgacg cgtttgcgct ttgttatcaa agatgaccag cttatcgaca
    21541 gcccgacgtt aaaaaccatc cccggcgtgc tcggcgtggt acgtagtgac aaccagtgtc
    21601 aggtgattat cggcaatacc gtttcacaag cctttcagga agtcgtcagc ctgctgccgg
    21661 gagatatgca gcccgcacag cccgtgggta aacccaaact cacgctgcgt cgcattggtg
    21721 cggggatcct cgatgcgctg atcggcacca tgtcaccgct gatcccggcg attatcggcg
    21781 gatcgatggt caaactgctg gcgatgatcc tcgagatgag cggcgtgctg acaaaaggat
    21841 cgccgacctt aaccattctg aatgtgattg gtgacggtgc tttcttcttc ctgccgctga
    21901 tggtcgcggc atctgccgcc atcaaattta aaaccaatat gtcgctggcg attgccatcg
    21961 cgggtgtgct ggtacatccg agttttattg aactgatggc gaaagcggcc cagggtgaac
    22021 atgtcgaatt tgccctgatt ccggtcaccg cggtgaaata cacctacaca gcgatcccgg
    22081 cgctggtgat gacttggtgc ctgtcatata tcgaacgctg ggtggatcgc attacaccgg
    22141 cggtgaccaa aaacttcctc aagccaatgc tgattgtgtt gattgccgca ccgctggcaa
    22201 tcctgctgat tggcccgatt ggtatctgga tcggtagcgc catttcggcg ctggtttaca
    22261 ccattcatgg ttatctgggc tggctttcag tcgccattat gggcgcgctg tggcctctgc
    22321 tggtaatgac cgggatgcac cgcgtcttta cgccaaccat cattcagacc attgccgaaa
    22381 ccggcaaaga agggatggtc atgccgtcag agatcggcgc taacctgtcg ctgggcggtt
    22441 catcactggc ggtggcgtgg aaaacgaaaa aaccggaact gcgccagacg gcgctggctg
    22501 cggcggcatc agccattatg gcggggattt ccgaaccggc gttatacggc gtggcgatcc
    22561 gcctgaaacg tccgcttatc gccagtctta tcagcggttt tatttgcggc gcggttgccg
    22621 gtatggcggg gcttgccagc cactcaatgg cagcgccggg gctatttacc agcgtgcaat
    22681 tcttcgatcc ggcgaatcca atgagcatcg tctgggtgtt cgcggtcatg gcgctggcgg
    22741 tggtgctgtc gtttatcctc acactgttgc tcggctttga ggatattcct gttgaggaag
    22801 cggctgccta ggcgcgaaag catcagagcg tacaaccgac cgtcgccaaa gaagtaagtc
    22861 ttaattgagg atgaaaatgt cagtatttcc agaaggtttt ttatggggcg gcgcgcttgc
    22921 cgccaaccaa tctgaaggtg cgttccgtga aggcggaaaa gggctgacca ccgtcgatat
    22981 gatcccacac ggcgagcatc gaatggcggt gaaactgggg ctggaaaaac gttttcagtt
    23041 gcgcgatgac gagttttatc ccagccatga ggcgacggat ttttatcatc gttataaaga
    23101 agatatcgcc ctgatggcag agatgggatt caaggttttc cgtacctcaa ttgcctggag
    23161 ccgtctcttt ccgcagggcg atgaaatcac gcccaatcag cagggcattg ctttttatcg
    23221 ttctgtcttt gaagagtgta aaaagtacgg tatcgaaccg ctggtcacgt tgtgccactt
    23281 cgatgtgccg atgcatctgg tcaccgaata tggctcctgg cgtaaccgca agctggtgga
    23341 gtttttcagc cgctacgcca gaacctgctt tgaagcattt gatggtctgg tgaaatactg
    23401 gctaaccttc aatgaaatca acattatgtt gcatagcccg ttctccggcg cgggtctggt
    23461 gtttgaagaa ggtgaaaatc aggatcaggt gaaatatcag gccgcgcatc accagctggt
    23521 tgccagtgcg ctagccgcca aaatcgccca tgaggttaac ccgcaaaatc aggtgggctg
    23581 tatgctggcg ggcggcaact tctaccctta cagctgcaaa ccggaagatg tctgggcggc
    23641 gctggagaaa gatcgggaaa acctgttttt tatcgatgtg caggcgcgcg gcgcgtatcc
    23701 ggcttactct gcccgcgtat ttcgcgaaaa aggggtaacc atagataaag cgctgggcga
    23761 tgatgagatc ctgaaaaaca ccgtcgattt tgtctctttc agctattacg cctcgcgctg
    23821 cgcctcggcg gagatgaacg ccaacaacag cagtgcggcg aacgtggtga aatcgctgcg
    23881 taacccgtat ctgcaagtga gcgactgggg ctggggaatt gatccactcg gtctgcgtat
    23941 caccatgaat atgatgtacg atcgttatca gaagccgctg tttctggtgg aaaacggcct
    24001 cggcgcaaaa gatgaacttg ctgccaatgg cgagattaac gatgactatc gcatcagcta
    24061 tttacgcgaa catatccgcg caatgggcga agcgattgca gatggcattc cgctgatggg
    24121 ctacaccaca tggggctgta ttgatttagt ttccgcctct acgggtgaaa tgagcaaacg
    24181 ctacggtttt gtctacgtag accgtgacga cgcaggcaac ggcacgctga cgcgcacacg
    24241 taagaaatcg ttctggtggt ataaaaaagt gattgccagt aatggggaag atttagagta
    24301 agtaacagtg ccggatgcgg cgtgaacgcc ttatccggcc tacatgtcgc acgaaccagg
    24361 aaggcccgat aagcgcagcg catcgggcaa tttagcattt ggcatcagag ctggttcacc
    24421 ccatcaagaa catccctgtc ctgattcctt aatgaaaaac tactcttctt ccaccgctaa
    24481 ctgcgcgaag ccgccattcc cttcccagcc ttccagtcgt tgataaacgg tttctaccgc
    24541 atctttaatc ggctgggtca tcgggtagta aaagccgacg atatccggct gtatgccgag
    24601 gaaaatcact tcgccaatat cttctttcaa ctggtcgata agatagttca gaggcatgtt
    24661 atgggtagtc atcataaaca tctcggcgat atcatccggg tcgatgatgc ggatctcgcc
    24721 ggggtttagc cccatatccg tggcgtcgac aatcagtaac cgcgtagggc gcagttcacg
    24781 gatggcgacg atgtcgtttt ccggtgcact accgccgtca atcaccaccc agttaccttt
    24841 cggcgcggcg gcgcactttt ccgccagcag cggacctgcg ccatcatcgc ccatcatgct
    24901 attgccaaca cagagtaaaa cgtcagtcac gcaatctcct caccatcaaa tagatggcgt
    24961 tttcctgatg aatatcatgc agcatactta acagcattgt actccattcc tgctgctgcg
    25021 aagtttgcgc tgcccgggct ttatcgaatg cgttggccag catcggcaca tggttaatgt
    25081 cgatgacgat ctcaccgtac ttcggtacgc cttccatttt gcggcgggct tcactgcccg
    25141 cctccagagt ggcaatccat gccagatatt catcccacgg gcaggtgagc gccgcttcca
    25201 ggcaatcgat aaccccaagg tggtgaccaa tcgccaggct gtaatagacc acctgctgcg
    25261 cctcggcggg cgtggcatcg ttctcatcaa taaatttacg gctcagttga ctgaacacca
    25321 ccttttcact catcggatac gcacctcttc tacaacatga ttcagatggc tgacaatctc
    25381 gttcagacgc ggatcgtttt ccgcttccag ccagcgtgca acctgttctt cgccctgccc
    25441 taactgtgtc aggaagtcat cggcaatctg acgaccgtaa cgataacccg ccaggcggcg
    25501 tgcttcgcga tccactttca cgcgcagcgg ctgcaccata tcgccatgca ggatctccgc
    25561 cggttgttca tccagttcac ccggcccacg ggcgtgaatt ttctgctcca gcaggccgag
    25621 cgccattgca aagccgtaca gcgtggcggc aggcgttggc gggcagccag ggatataaac
    25681 atccacaggg acaattttat ccgtaccgcc ccacacgcag cgcaggggat cgcattgcac
    25741 gggtgaccgc gccggtaaac agtaaaatat ccgcatgacg cggtgaagga acgactttaa
    25801 tgccgaagcg ttctgcatca aacagcggcg ataaagtggc gaaaatttcg atttcgcagc
    25861 cgttgcagcc gccgcagtcc acgcggtaaa cataggcaga acgtttgatt tttttcagta
    25921 acgacgcctt catgctggcg atggattcat ccaccgtcat cgggaccgga atgccgttgg
    25981 cgtcacgggg gcctaataaa ttgctcatca gatggcctct ttcatatggc gagtcagttc
    26041 aatacggtcg gacggcacct ggcatttctg gcgcttacat tccgggcaag tctcaaagct
    26101 ttcgcggtgg ttttccgcgc ggctgtcgcc gttgtgctta agcagcgcaa tggcgtagtc
    26161 gatctctttc tggacggcga aaggatgatt gcagacgcga cagttgcaca gcgcgaagcg
    26221 agactgttgc aggaagtctt ctttcttcca caccgccagt tcgtactctt gcgacagctt
    26281 aatcgccgcc gtcgggcaaa cttcttcgca gcgtccacag aagatgcagc gcccgagatt
    26341 aaactcccag gccagctctc ctgtggcgag gtcagtttca accgttaagg cgtttgacgg
    26401 gcaggcattg acgcaggccg cgcagccgat gcactgctgc gggttctgct ctggcttacc
    26461 acggaagttt ttatcaaccg caatcggctc cagcggataa gacgaggtcg ccgtgccggt
    26521 tttgataact tttttgataa aggtaaacat ggcgattcct tatttcagcg gcgagttttt
    26581 acgctcaatg ctgtagcgct cgagttcttt gtacggcacc actttgctct tcttcttacg
    26641 tacatcgacc acagtcatgc ggtcggtaca ggagtagcaa gggtccaggc taccgataat
    26701 cagcggcgca tcggaaacag tgttgccacg cagcatgtag cgcagggtcg gccagttcgc
    26761 gtaggtcgcg gcacggcagc gccagcggta cagcttctgg ttgtcgccag tcatgctcca
    26821 gtggatatca tcaccgcgcg gcgcttcggc aaagcccagc gcgaaacggt gcggaatgta
    26881 ggtaaagcct tccaccatca gcgggccacc cggcaggtta tccagaccgt agtcgatcat
    26941 gttcagcgcg gtatagactt cgttgatacg cactttcaga cgcgaaataa cgtcgcagcc
    27001 ctgctcgctg tggacttcca ttggcagcag gccataacca acaaacgggt gatcagcgcg
    27061 ggtatcgcga gcgtgtccgc tggcgcggac catcgggcca acgttactga aatcgcgggc
    27121 aatttccggg tccagacgac caatgccgat ggtgcgctgt tccatgttcg gtgtgctcag
    27181 cagcacatcc accagctcct gcacttcacg acgcatctgt tgcgccagct ggcgggtctg
    27241 gatcatgtca tctttcaaca gatcgcgacg aatcccgccg atcaggttca ggccgtaggt
    27301 tttacgcgca ccggtgagga tctcggccat tttcatggag gtttcacgca cgcggaagaa
    27361 ctgcataaag ccggagtcga agccggtaaa gtggcaggcg aggccgaggt tgagcagatg
    27421 cgagtgcagg cgttccacct ccagcagaat ggcgcggatc atctgcgcac gttctggcac
    27481 ctgaataccc atcgcgtttt ccaccgacgt ggtgtaggcg gtgctgtggg cgaagccgca
    27541 gatcccgcac acacggtcag agaggaaggt cacttcgtta taacccatgc gggtttccgc
    27601 cagtttttcc ataccgcgat ggacatagaa caagcggtag tctgcgtcga taatgttttc
    27661 gccatcgacg aacagacgga agtggcccgg ttcgtcagaa gtgacgtgca gcggaccaat
    27721 cggcacgacg ttgtttttct tgtcgcccag ttcgttgatg aactcgtagg tttcagcatc
    27781 ggtggtcggt gccggacgct gacgataatc catgctgtct ttacgcagcg gataaagttc
    27841 atccggccag tcatccggca gcaccagacg gcgttcatcc ggcagaccaa ccggaatcaa
    27901 accgtacata tcgcgcactt cgcgctcgcc ccacaccgcc gccggaacgc gcggcgtcac
    27961 ggacggatac tccggtttgt tggcatcaac ttcgacgcga accgttaccc agcacttagt
    28021 ccccttctcc atcgacagca cgtaataaac ggcgtaatga ccattcagtt tgcgttcgtc
    28081 gttaccaaaa agcaccgaca gccagccccc ctgcttgtag tagagaaact ccaccacttc
    28141 cggcagatag ttcaccttta cggtgatagt cagctgatct ttggtctgcc aggcgtggtc
    28201 cagcacgacg cccggaaatg cctcattcag cgcggcgaga taatgttgac ctaatttttc
    28261 ttcagacatg ctcaaactct ctttaatcac gccgccagca aggagacgaa cgctaaaaat
    28321 gcaaagccaa acccagccca ggtaatgcgc ggagtaatat caagacgcag acgggccatg
    28381 ctgttttcga acagcgcgat aaccaggacg ccgaccacca gttttacgat ggcaatcacc
    28441 agcgccagca gcagtccacc ggcggtgaag gtttccattt gtccccacgg aataaacacc
    28501 ccgacgaaca tctgcaacac caccagctgt ttcaggctga taccccattt catgacgcca
    28561 aagccgctgc cgctatactc agagagcgga ccttcctgca actcctgctc ggcttccgcc
    28621 aggtcgaacg gcagtttgcc catttcgata aaagtggcga acgcacaggt gcagagcgcc
    28681 agcaccagcg ggatgctttg gctcagcggc cagtgataaa cggtgtcggt aatgttgctg
    28741 atgttggtgg aaccggcaac ctgtgcggca acccacagac caagcagcaa catcggttcg
    28801 accagcacgc caagcatcgc ttcacggctc gcaccgatag cggtaaacgg gctaccggta
    28861 tccagaccgg aaatggcaaa gaagaaacgc gcgatggcga agagatacag taaggtgatc
    28921 aaatcgccca gttgcggcag cggagaaccg acggtcacca ccggcagcgc agtagcgata
    28981 gtcagcatga cgcccaccat cacatacggc gtcaggcgga acacccagcc agaggcatcc
    29041 gggccaacgc tctggcggcc cagcagtttg ataatgtcgc gatactcctg caacacgccc
    29101 ggcccgcgac ggttatgcag acgggcgcgc gccacgcggg taataccgga gagcagcggc
    29161 gcaacggcaa ataacaccag cgcctgaatt aacggatata aaacactcat tctcaggctc
    29221 ctcgtgaaac aataatcacc accagtaccg ccagttcaac cagcgccatc cggcggaaca
    29281 gcaacgcact accttcgcac tgccagcccg gcaccagcga caccggattc agccatttgc
    29341 gcagtttcag cactggcgca aacgcctgtt taaccggcat ggcaaaaccg tgagcggtaa
    29401 tcaccattga tttttcatgg tcgtagccgc acacccaggc cgcaccgcgg gaacgtgacg
    29461 gcaggcggtc gcctttgcaa atcgccataa tgatgaatgg cagcagagag catcggcagc
    29521 agccacggcg cagcaacacc gccaattacg cagcaaatcg ccagtgccac tacgcttacg
    29581 ctcatcagga gcggcgcaca ggtggcgttt tcggcttctt tggtacgcgg cgcgccgagg
    29641 aacgtgacgc catagacttt cgccatacac atcaccgcca gcgcaccggt aattgccaga
    29701 cccacagcga gcagcggccc cagcagacgg gcaacaaacg cgccactatt gctcagtttg
    29761 aaaaaggatt gatagataac ccattccccg gcaaacccgt tcagcggcgg cagcgcagcc
    29821 attgccatca acccgactaa catggcgatg gagataaccg gcattttctt gccaatacca
    29881 ccgagttttt cgatatcgcg atgaccggta cggaaccaga cgctccccgc cccgaggaac
    29941 agtacgcttt tgaacaggct atggttaagc agatggtaca gaccaccgac caggccaaga
    30001 gcaatcagcg ccggttgttc gagcgcgata cccgttacgc cagcgcccag ccccagcagg
    30061 ataatgccga tattttccag ggtgtggtaa gccagcaggc gctggatgtt gtgctccatc
    30121 agcgcataca gaccaccgac aaacgcggtg atcatgccga gcaccagcag cacgatcccc
    30181 caccacagcg gtgcattacc gcccagcagt gacagggtta aaatgcccag caggccaatt
    30241 ttcatgacta ccgtagaaaa caacgcggca gctggcgcag aggcgttagc atgtgcctgc
    30301 ggcacccagc cgtgcagcgg aataatcccg gcgagcaggc caaagccaat cacaccgagc
    30361 agccagatat cggaaccgag cggcagctgt tgcatacgca tatccagcag gcgcagatcc
    30421 agcgtgccat aacgctgcca cagcagccag caagcaatcg ccagcagcag agtgccaaga
    30481 cgccccagcg caaaccacag tttgccctct ttgctgttgc tggtgaggaa caccgcacac
    30541 aaggccatga cttcggccat taccacgaac atgccgaggt tgctggcgat gacggcgcag
    30601 acggcggcag ccatcaacat attgatctgc aagccgttgc acttcacctg cgcgtggcga
    30661 tgccagtcaa tgttgtagag gctgacaaac agaccgcaca gaccgagcgt aatcagccaa
    30721 atcgcgttaa gcggggagat ttgcacatcg tagcttacca gcgacagcgc accgctcacg
    30781 ccaaccgcgc cagtcagcac agtgaagccc gcggctgccg tatacaggct accaaccgcg
    30841 ccgccaattc cggctatcca gccacttagc gtcttttgaa aagaaaagag aaatgccaga
    30901 acagcggcgg cgacaaacca caccacgccg ctattgatca gggaaattgc gctcatttag
    30961 cctctccact ttgagcctgc tgaaacaagg tgagatcgcc aaagtccgta ttaaaagtca
    31021 gctcacgctt acgtttgctg acgcgggcga tatcggtgtt atccaccaga tgcagggctt
    31081 tggtcgggca catccgcacg caggccggac cttgttcatc aaagctacaa aggtcacatt
    31141 tgacggcgat cgcgcgaata cccggcaccc agtcaagcag cgtactgata cgcgccggag
    31201 caggcggtgc cggtggcgct ttcggggtat tggcatttgc aggaatatcc agcggacggc
    31261 tgccggaaaa ttcaattgcg ccaaacgggc aggcgatgcc gcacagcttg cagcttacgc
    31321 acaggctttc attcaactgc acggccccat caacgcgggt gatgacgtta accgggcaga
    31381 ccaccgcgca gggtgcatct tcacagtggt gacagagctg cggcgcagat tctttttcat
    31441 tcagcatcac tctcaggcgc ggcattgatt gcaggccgtg ctggcgatgc gtctctgaac
    31501 aggctgcctc acaagtgtgg cagccgatac agagcgtgga gtcagcaatt acaaaacgat
    31561 tcaccaggca ttcctcaggt gattgtcatt tttgacgaaa acatgccgat gaaatgtcat
    31621 tttcgacact catcgacacg cccatcccca aacaggcgta acgcctgcaa aacgggcaaa
    31681 gcctcagctc atgctgccgg gctttgtccc tttaccagtt ggcttaaatt caccggcaca
    31741 ttgttttcaa tggcggtgta taagctgtcg taaacgccag cgattttttc gagatagtgt
    31801 tccagaacct gttcgcgatc gcggatgttg accttgccat caatcatgcc gtcaatgctc
    31861 agttgcgcct gcgcaatccg ctgtttgtct tcgccctctt ttgtttcgac gtaatactcg
    31921 atggtgtggc tgttaaagcc atccgccagg gtgacgtaaa tacgaaaatg ttcaaaaagg
    31981 acgaaacaga gttctttgtc cggcgcgcag ctcatggcgt gatgcaggcg cgctttcgat
    32041 aacgtgatcc cctgaaccag cgaattgcag tagatgtgcc actggtcctg taggcgacga
    32101 tgccgctgtg cgatgtaatc ggctttctcg cttatttccc aaatagtcat tgtcaggtta
    32161 cccgtttaac agagatgcca gctttaagca ttttctgtgc caatttttaa tttattgtta
    32221 ttaaaacgat ttttaagcta aagatgaatt tcgtcgccgt gtcgacgtgt catttcgaca
    32281 tcatcgacat tattcacctc agggataatc aacactggca caattattgc ttgtagctgg
    32341 caatagttaa tgggaggtga tatgcacgaa ataaccctct gccaatgggc actggaattg
    32401 atcgaacagc aggccgcaaa acacggcgca aaacgcgtaa ctggggtctg gctcaaaatt
    32461 ggcgcatttt cttgtgtcga aaccagctct cttgcctttt gttttgatct ggtttgccgc
    32521 ggcagcgtgg cggaaggttg taaactgcac ctcgaagaac aagaggtcga atgctggtgt
    32581 gaaacatgcc aacagtatgt gacgctattg acccagcgcg tccgccgctg tccacagtgt
    32641 catggtgaca tgctacagat tgtggcagac gacggtttac agattcggcg gatagaaata
    32701 gaccaggagt gagcgatgtg tacaacatgc ggttgcggtg aaggcaacct gtatatcgag
    32761 ggtgatgaac ataaccctca ttccgcgttt cgtagcgcgc catttgcccc ggcggcacgc
    32821 ccgaagatga aaatcaccgg cattaaagcg cctgaattta cccccagcca gactgaagaa
    32881 ggcgacctgc attacggtca tggcgaagcg ggcactcacg caccgggcat gagccagcgt
    32941 cggatgctgg aagtcgaaat tgacgtgctg gacaaaaaca accgtctggc tgaacgcaac
    33001 cgcgcgcgct ttgctgcccg caagcaactg gtgctcaacc tggtttccag cccaggttcc
    33061 ggtaaaacca ccctgctgac ggaaacccta atgcgcctga aagacagcgt tccgtgcgcg
    33121 gttattgaag gtgaccagca aaccgtgaac gatgccgcac gcattcgcgc taccggcaca
    33181 ccagcgattc aggtgaacac aggtaaaggc tgccatcttg acgcacagat gattgccgac
    33241 gccgcaccgc gtctgccact ggacgataac ggtattctgt ttatcgaaaa cgttggcaac
    33301 ctcgtatgcc cggccagctt cgatctcggt gaaaaacaca aagtggcggt gctttccgtt
    33361 accgaaggtg aagacaaacc gctgaaatat ccgcatatgt ttgccgccgc ctcgctgatg
    33421 ctgctcaaca aagttgacct gttgccgtat ctcaactttg acgttgagaa gtgcatcgcc
    33481 tgcgcccgcg aagtcaatcc agaaattgaa atcatcctta tttccgccac cagcggtgaa
    33541 gggatggacc agtggctgaa ctggctggag acacagcgat gtgcataggc gttcccggcc
    33601 agatccgcac cattgacggc aaccaggcaa aagtcgacgt ctgcggcatt cagcgcgatg
    33661 tcgatttaac gttagtcggc agctgcgatg aaaacggtca gccgcgcgtg ggccagtggg
    33721 tactggtaca cgttggcttt gccatgagcg taattactga agccgaagca cgcgacactc
    33781 tcgacgcctt acaaaacatg tttgacgttg agccggatgt cggcgcgctg ttgtatggcg
    33841 aggaaaaata atgcgttttg ttgatgaata tcgcgcgccg gaacaggtga tgcagttaat
    33901 tgagcatctg cgcgaacgtg cttcacatct ctcttacacc gccgaacgcc ctctgcggat
    33961 tatggaagtg tgcggtggtc atacccacgc tatttttaaa ttcggcctcg accagttact
    34021 gcctgaaaac gttgagttta tccacggtcc gggttgcccg gtgtgcgtac tgccgatggg
    34081 tagaatcgac acctgcgtgg agattgccag ccatccggaa gtcatcttct gtacctttgg
    34141 cgacgccatg cgcgtaccag ggaaacaggg atcgctgttg caggcaaaag cacgcggtgc
    34201 cgatgtgcgc atcgtttact cgccgatgga tgcgttgaaa ctggcgcagg agaatccaac
    34261 ccgcaaagtg gtgttcttcg gcttaggttt tgaaaccacc atgccgacca ccgccatcac
    34321 tctgcaacag gcgaaagcgc gtgatgtgca gaatttttac ttcttctgcc agcacattac
    34381 gcttatcccg acgctgcgca gtttgctgga acagccggat aacggtatcg acgcgttcct
    34441 cgcgccgggc cacgttagta tggttatcgg cactgatgcc tataatttta tcgccagcga
    34501 ttttcatcgt ccgctggtgg tcgctggttt cgaacccctt gatctactgc aaggcgtggt
    34561 gatgctggtg gagcagaaaa tagcggccca cagcaaggta gagaatcagt atcgtcgggt
    34621 ggtaccggat gccggtaacc tgctggcgca acaggcgatt gccgatgtgt tctgtgtcaa
    34681 cggcgacagc gaatggcgcg gcttaggcgt gattgaatct tctggcgtgc acctgacgcc
    34741 ggattatcaa cgattcgatg ccgaagcaca tttccgcccg gcaccgcagc aggtctgcga
    34801 tgacccgcgc gcgcgttgtg gtgaggtatt aacgggcaaa tgtaagccgc atcaatgccc
    34861 gctgtttggt aacacctgta atcctcaaac cgcatttggt gcactgatgg tctcctccga
    34921 aggagcgtgc gccgcgtggt atcagtatcg tcagcaggag agtgaagcgt gaataatatc
    34981 caactcgccc acggcagcgg cggccaggcg atgcagcaat taatcaacag cctgtttatg
    35041 gaagcctttg ccaacccgtg gctggcagag caggaagacc aggcacgtct tgatctggcg
    35101 cagctggtag cagaaggcga tcgtctggcg ttctccaccg acagttacgt cattgacccg
    35161 ctgttctttc ctggcggtaa tatcggcaag ctggcgattt gcggcaccgc gaatgacgtt
    35221 gcggtcagtg gcgctattcc gtgctatctc tcctgtggct ttatcctcga agaaggattg
    35281 ccgatggaga cactgaaagc cgtagtgacc agcatggcag aaaccgcccg cacggcaggc
    35341 attgccatcg ttactggcga tactaaagtg gtgcagcgcg gcgcggcaga taaactgttt
    35401 atcaacaccg ctggcatggg cgcaattccg gcgaatattc actggggcgc acagacgcta
    35461 accgcaggcg atgtattgct ggttagcggt acactcggcg accacggggc gactatcctt
    35521 aacctgcgtg aacaactggg gctggatggt gaactggtca gcgactgcgc ggtgctgacg
    35581 ccgcttattc agacgctgcg tgacattccc ggcgtgaaag cgctgcgtga tgccacccgt
    35641 ggtggtgtaa acgcggtggt tcatgagttc gcggcagcct gcggttgtgg tattgaaatt
    35701 tctgaatcag cactgccggt taaacctgct gtgcgcggcg tttgcgaact gctgggactg
    35761 gacgccctta actttgccaa cgaaggcaaa ctagtaatag ctgttgaacg caacgcagca
    35821 gagcaagtgc tggcagcgtt acattcccat ccactgggga aagacgcggc gctaattggt
    35881 gaagtggtgg aacgtaaagg tgttcgtctt gccggtctgt atggtgtgaa acgaaccctc
    35941 gatttaccac acgccgaacc gcttccgcgt atatgctaat aaaattctaa atctcctata
    36001 gttagtcaat gaccttttgc accgctttgc ggtgctttcc tggaagaaca aaatgtcata
    36061 tacaccgatg agtgatctcg gacagcaagg gttgttcgac atcactcgga cactattgca
    36121 gcagcccgat ctggcctcgc tgtgtgaggc tctttcgcaa ctggtaaagc gttctgcgct
    36181 cgccgacaac gcggctattg tgttgtggca agcgcagact caacgtgcgt cttattacgc
    36241 atcgcgtgaa aaagacaccc ccattaaata tgaagacgaa actgttctgg cacacggtcc
    36301 ggtacgccgc attttgtcgc gccctgatac gctgcattgc agttacgaag aattttgtga
    36361 aacctggccg cagctggtcg caggtgggct ataccccaaa tttggtcact attgcctgat
    36421 gccactggcg gcggaagggc atatttttgg tggctgtgaa tttattcgtt atgacgatcg
    36481 tccctggagc gaaaaagagt tcaatcgtct gcaaacattt acgcagatcg tttctgtcgt
    36541 caccgaacaa atccagagcc gcgtcgtcaa caatgtcgac tatgagttgt tatgccggga
    36601 gcgcgataac ttccgcatcc tggttgccat taccaacgcg gtgctttccc gcctggatat
    36661 ggacgaactg gtcagcgaag tcgccaaaga aatccattac tatttcgaca ttgacgatat
    36721 cagtatcgtc ttacgcagcc accgtaaaaa caaactcaac atctactcca ctcactatct
    36781 tgataaacaa catcccgccc acgaacagag cgaagtcgat gaagccggaa ccctcaccga
    36841 acgcgtgttc aaaagtaaag agatgctgct gatcaatctc cacgagcggg acgatttagc
    36901 cccctatgaa cgcatgttgt tcgacacctg ggcaaccaga ttcaaacctt gtgcctgtta
    36961 ccgctgatgt ctggcgacac catgctgggc gtgctgaaac tggcgcaatg cgaagagaaa
    37021 gtgtttacca ctaccaatct gaatttgctg cgccagattg ccgaacgtgt ggcaatcgct
    37081 gtcgataacg ccctcgccta tcaggaaatc catcgtctga aagaacggct ggttgatgaa
    37141 aacctcgccc tgaccgagca gctcaacaat gttgatagtg aatttggcga gattattggc
    37201 cgcagcgaag ccatgtacag cgtgcttaaa caagttgaaa tggtggcgca aagtgacagt
    37261 accgtgctga tcctcggtga aactggcacg ggtaaagagc tgattgcccg cgcgatccat
    37321 aatctcagtg ggcgtaataa tcgccgcatg gtcaaaatga actgcgcggc gatgcctgcc
    37381 ggattgctgg aaagcgatct gtttggtcat gagcgtgggg cttttaccgg tgccagcgcc
    37441 cagcgcattg gtcgttttga actggcggat aaaagctccc tgttcctcga cgaagtgggc
    37501 gatatgccac tggagttaca gccgaagttg ctgcgtgtat tgcaggaaca ggagtttgaa
    37561 cgtctcggca gcaacaaaat cattcagacg gacgtacgtt taattgccgc gactaaccgc
    37621 gatctgaaaa aaatggtcgc cgaccgagag ttccgtagcg atctctatta ccgcctgaac
    37681 gtattcccga ttcacctgcc gccactacgc gagcgtccgg aagatattcc gctgctggcg
    37741 aaagccttta ccttcaaaat tgcccgtcgt ctggggcgca atatcgacag cattccagcc
    37801 gagacgctgc gcaccttgag caacatggag tggccgggta acgtacgcga actggaaaac
    37861 gtcattgagc gcgcagtatt gctaacacgc ggcaacgtgc tgcagctgtc attgccagat
    37921 attgctttac cggagcctga aacgccgcct gccgcaacgg ttgtcgctca ggagggcgaa
    37981 gatgaatatc agttgattgt tcgcgtgctg aaagaaacca acggcgtggt tgccgggcct
    38041 aaaggcgctg cgcaacgtct ggggctgaaa cgcacgaccc tgctgtcacg gatgaagcgg
    38101 ctgggaattg ataaatcggc attgatttaa ctgcaaattg ccggacagat ctgcctgtcc
    38161 ggcatactat tcacgaggtt ttttcggacg atatttttcc ggcagttctg gcaccggacg
    38221 cttgtcatcg atgagatgac gcacggttaa gatcggatga cgccacagca ttctcggccc
    38281 ggcccaacgc ataatctgtt tcatctcttc acgctttgca ggctggtaac agtgcaccgg
    38341 acactgctta caggctggtt tctcttcgcc gaacacacat ttatccagcc gcttttgcgc
    38401 gtaaacaaac aacgcctcgt aatgctccgg ctccgctgac gcctgcgggc atttcgcttg
    38461 ataaagatcg atcatttttt taatcgtcag tttttcacga gagatacgct tgccggacat
    38521 gctgcctcca tactcttaag gtgtatttat attacaactt aatttgaaag gggactatgg
    38581 ctctgaagga ggaggtttat tcaaccgacg caattttgcg tacttgcttc ataagcatca
    38641 cgcaaaagct gcaaaacagc atctttcccg gaaccagcat caagaactcg ccgttcgctt
    38701 cttcccctga aatgattaac tccggtatca tgtgcgcctt atgtgattac aacgaaaata
    38761 aaaaccatca caccccattt aatatcaggg aaccggacat aaccccatga gtgcaataga
    38821 aaatttcgac gcccatacgc ccatgatgca gcagtatctc aggctgaaag cccagcatcc
    38881 cgagatcctg ctgttttacc ggatgggtga tttttatgaa ctgttttatg acgacgcaaa
    38941 acgcgcgtcg caactgctgg atatttcact gaccaaacgc ggtgcttcgg cgggagagcc
    39001 gatcccgatg gcggggattc cctaccatgc ggtggaaaac tatctcgcca aactggtgaa
    39061 tcagggagag tccgttgcca tctgcgaaca aattggcgat ccggcgacca gcaaaggtcc
    39121 ggttgagcgc aaagttgtgc gtatcgttac gccaggcacc atcagcgatg aagccctgtt
    39181 acaggagcgt caggacaacc tgctggcggc tatctggcag gacagcaaag gtttcggcta
    39241 cgcgacgctg gatatcagct ccgggcgttt tcgcctgagc gaaccggccg accgcgaaac
    39301 gatggcggca gagctgcaac gcactaatcc ggcggaactg ctgtatgcag aagatttcgc
    39361 cgagatgtcg ctgattgaag gccgtcgcgg cctgcgccgt cgcccgctgt gggagtttga
    39421 aatcgacacc gcgcgccagc agttgaatct gcaatttggc acccgcgatc tggtcggttt
    39481 tggcgtcgag aacgcgccgc gcggactttg tgctgccggt tgtctgttgc agtatgcgaa
    39541 agatacccaa cgcacgaccc tgccgcatat tcgttctatc accatggaac gtgagcagga
    39601 cagcatcatt atggatgccg cgacacgtcg taacctggaa attactcaga acctggcggg
    39661 cggtgcggaa aatacgctgg cttctgtgct cgactgcacc gtcacgccga tgggtagtcg
    39721 tatgctgaaa cgctggctgc atatgccagt gcgcgatacc cgcgtgttgc ttgagcgcca
    39781 gcaaactatt ggcgcattgc aggatttcac cgccgggcta cagccggtac tgcgtcaggt
    39841 cggcgacctt gaacgtattc tggctcgtct ggctttacga actgctcgcc cacgcgatct
    39901 ggcccgtatg cgccacgctt tccagcaact gccggagctg cgtgcacagt tagaaactgt
    39961 cgatagtgca ccggtacagg cgctacgtga gaagatgggc gagtttgccg agctgcgcga
    40021 tctgctggag cgagcaatca tcgacacacc gccggtgctg gtacgcgacg gtggtgttat
    40081 cgcatcgggc tataacgaag agctggatga gtggcgcgcg ctggctgacg gcgcgaccga
    40141 ttatctggag cgtctggaag tccgcgagcg tgaacgtacc ggcctggaca cgctgaaagt
    40201 tggctttaat gcggtgcacg gctactacat tcaaatcagc cgtgggcaaa gccatctggc
    40261 acccatcaac tacatgcgtc gccagacgct gaaaaacgcc gagcgctaca tcattccaga
    40321 gctaaaagag tacgaagata aagttctcac ctcaaaaggc aaagcactgg cactggaaaa
    40381 acagctttat gaagagctgt tcgacctgct gttgccgcat ctggaagcgt tgcaacagag
    40441 cgcgagcgcg ctggcggaac tcgacgtgct ggttaacctg gcggaacggg cctataccct
    40501 gaactacacc tgcccgacct tcattgataa accgggcatt cgcattaccg aaggtcgcca
    40561 tccggtagtt gaacaagtac tgaatgagcc atttatcgct aacccgctga atctgtcgcc
    40621 gcagcgccgt atgttgatta ttaccggccc gaacatgggc ggtaaaagta cctatatgcg
    40681 ccagaccgca ctgattgcgc tgatggccta catcggcagc tatgtaccgg cacaaaaagt
    40741 cgagattgga cctatcgatc gcatctttac ccgcgtaggc gcggcagatg acctggcttc
    40801 cgggcgctca acctttatgg tggagatgac tgaaaccgcc aatattttac ataacgccac
    40861 cgaatacagt ctggtgttaa tggatgagat cgggcgtgga acgtccacct acgatggtct
    40921 gtcgctggcg tgggcgtgcg cagaaaatct ggcgaataag attaaggcat tgacgctgtt
    40981 tgccacccac tatttcgagc tgacccagct accggagaaa atggaagacg tcgccaacgt
    41041 gcatctcgat gcgctggagc acggagacac cattgccttt atgcatagcg tgcaggatgg
    41101 cgcggcgagc aaaagctacg gcctggcggt tgcagctctg gcaggcgtgc caaaagaggt
    41161 gattaagcgc gcacggcaaa aactgcgtga gctggaaagc atttcgccga acgccgccgc
    41221 tacgcaagtg gatggtacgc aaatgtcttt gctgtcagta ccggaagaaa cctcgccagc
    41281 ggtcgaagct ctggaaaacc tggacccgga ttcactgact ccgcgtcagg cgctggaatg
    41341 gatttatcgc ttgaagagcc tggtgtaata acaattcccg atagtctttt gctatcggga
    41401 atattaacga caactgacga ataaaataaa aacaccctgt ataataggaa agcttatttt
    41461 acagggtaaa accatgccat ctacacgcta tcaaaaaatt aatgcccatc actatcgcca
    41521 tatatgggtc gttggtgata ttcatggtga ataatcaatt attacaatcc cgcttacatc
    41581 aactctcttt ttgccctgaa accgacttac ttatttctgt cggcgataat attgatcgtg
    41641 ggccggagag tcttgacgtc ctgcgcctgc taaaccagcc ctggtttatc tccgttaaag
    41701 gcaaccacga agcaatggcg ctggatgcgt tcgcgaccgg cgatggcaat atgtggcttg
    41761 ccagcggtgg tgactggttt ttcgatttaa atgattcaga gcaacaagag gcaatagatc
    41821 tgttgctgaa attccatcac cttccacata ttattgaaat cactaacgac ataataaaat
    41881 atgtcatcgc acatgcagat tatccgggtg atgaatatct ctttggcaaa gaaatagcgg
    41941 agagcgaatt actctggcct gtttatcgtg tgcagaaatc gcttaatggc gagttacaac
    42001 aaataaacgg cgctgattat tttatatttg gacatatgat gtttgataac attcagacgt
    42061 tcgctaacca gatttatatt gataccggat cgccgaaaag tgggcggctg tcattttata
    42121 aaataaggta gtctcatgct tcttctgtga agcatgagta accagatgtt attgcaggc
//
LOCUS       DADMHM010000007        41909 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.007, whole genome shotgun sequence.
ACCESSION   DADMHM010000007 DADMHM010000000
VERSION     DADMHM010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 41909)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 41909)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..41909
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.007"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            53..2215
                     /gene="ybiO"
                     /locus_tag="JN125_000378"
     CDS             53..2215
                     /gene="ybiO"
                     /locus_tag="JN125_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001267224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive channel protein"
                     /protein_id="HAY8870269.1"
                     /translation="MRWILFILFCLLGAPAHAVSIPGVTTTTTTDSTTEPAPEPDIEQ
                     KKAAYGALADVLDNDTSRKELIDQLRTVAATPPAEPVPKIVPPTLVEEQTVLQKVTEV
                     SRHYGEALSARFGQLYRNITGSPHKPFNPQTFSNALTHFSMLAVLVFGFYWLIRLCAL
                     PLYRKMGLWARQKNRERSNWLQLPAMIIGAFIIDLLLLALTLFVGQVLSDNLNAGSRT
                     IAFQQSLFLNAFALIEFFKAVLRLIFCPNVAELRPFTIHDETARYWSRRLSWLSSLIG
                     YGLIVAVPIISNQVNVQIGALANVIIMLCMTVWALYLIFRNKKEITQHLLNFAEHSLA
                     FFSLFIRAFALVWRWLASAYFIVLFFFSLFDPGNSLKFMMGATVRSLAIIGIAAFVSG
                     MFSRWLAKTITLSPHTQRNYPELQKRLNGWLSAALKTARILTVCVAVMLLLSAWGLFD
                     FWNWLQNGAGQKTVDILIRIALILFFSAVGWTVLASLIENRLASDIHGRPLPSARTRT
                     LLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGV
                     FIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSSITTFANFVRGI
                     GSVVANYDVDRHEDADKANQALKDAVAELMENEEIRGLIIGEPNFAGIVGLSNTAFTL
                     RVSFTTLPLKQWTVRFALDSQVKKHFDLVGVRAPVQTY"
     gene            complement(2275..3201)
                     /gene="rlmF"
                     /locus_tag="JN125_000379"
     CDS             complement(2275..3201)
                     /gene="rlmF"
                     /locus_tag="JN125_000379"
                     /EC_number="2.1.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415328.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(1618)-N(6))-methyltransferase
                     RlmF"
                     /protein_id="HAY8870270.1"
                     /translation="MSAQKPGLHPRNRHHSRYDLATLCQVNPELRQFLTLTPAGEQSV
                     DFANPLAVKALNKALLAHFYAVANWDIPDGFLCPPVPGRADYIHHLADLLAEASGTIP
                     ANASILDIGVGANCIYPLIGVHEYGWRFTGSETSSQALSSAQAIISANPGLNRAIRLR
                     RQKESGAIFNGIIHKNEQYDATLCNPPFHDSAAAARAGSERKRRNLGLNKDDALNFGG
                     QQQELWCEGGEVAFIKKMIEESKGFAKQVMWFTSLVSRGENLPPLYRALTDVGAVKVV
                     KKEMAQGQKQSRFIAWTFMNDEQRRRFVNRQR"
     gene            3477..3737
                     /locus_tag="JN125_000380"
     CDS             3477..3737
                     /locus_tag="JN125_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415327.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HAY8870271.1"
                     /translation="MKKCLTLLIATVLSGISLTAYAAQPMSNLDSGQLRPAGTVSATG
                     ASNLSDLEDKLAEKAREQGAKGYVINSAGGNDQMFGTATIYK"
     gene            4002..6284
                     /locus_tag="JN125_000381"
     CDS             4002..6284
                     /locus_tag="JN125_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catecholate siderophore receptor Fiu"
                     /protein_id="HAY8870272.1"
                     /translation="MENNRNFPARQFHSLTFFAGLCIGITPVAQALAAEGQTNADDTL
                     VVEASTPSLYAPQQSADPKFSRPVADTTRTMTVISEQVIKDQGATNLTDALKNVPGVG
                     AFFAGENGNSTTGDAIYMRGADTSNSIYIDGIRDIGSVSRDTFNTEQVEVIKGPSGTD
                     YGHSAPTGSINMISKQPRNDSGIDASASIGSAWFRRGTLDVNQVIGDTTAVRLNVMGE
                     KTHDAGRDKVKNERYGVAPSVAFGLGTANRLYLNYLHVTQHNTPDGGIPTIGLPGYSA
                     PSAGTAALNHSGKVDTHNFYGTDSDYDDSTTDTATMRFEHDINDNTTIRNTTRWSRVK
                     QDYLMTAIMGGASNITQPTSDVNSWTWSRTANTKDVSNKILTNQTNLTSTFYTGSIGH
                     DVSTGVEFTRETQTNYGVNPVTLPAVNIYHPDSSIHPGGLTRNGANANGQTDTFAIYA
                     FDTLQITRDFELNGGIRLDNYHTEYDSATACGGSGRGAITCPAGVAKGSPVTTVDTAK
                     SGNLVNWKAGALYHLTENGNVYINYAVSQQPPGGNNFALAQSGSGNSANRTDFKPQKA
                     NTSEIGTKWQVLDKRLLLTAALFRTDIENEVEQNDDGTYSQYGKKRVEGYEISVAGNI
                     TPAWQVIGGYTQQKATIKNGKDVAQDGSSSLPYTPEHAFTLWSQYQATDDISVGAGAR
                     YIGSMHKGSDGAVGTPAFTEGYWVADAKLGYRVNRNLDFQLNVYSLFDTDYVASINKS
                     GYRYHPGEPRTFLLTANMHF"
     gene            6290..7003
                     /gene="ybiX"
                     /locus_tag="JN125_000382"
     CDS             6290..7003
                     /gene="ybiX"
                     /locus_tag="JN125_000382"
                     /EC_number="1.14.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706682.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKHD-type hydroxylase YbiX"
                     /protein_id="HAY8870273.1"
                     /translation="MWGAGPTFWRNCMMYHIPGVLSPQDVARFREQLEQAEWVDGRVT
                     TGAQGAQVKNNQQVDTRSTLYAALQNEVLNAVNQHALFFAAALPRTLSTPLFNRYQNN
                     ETYGFHVDGAVRSHPQSGWMRTDLSATLFLSDPQSYDGGELVVNDTFGQHRVKLPAGD
                     LVLYPSSSLHCVTPVTRGVRVASFMWIQSMIRDDKKRAMLFELDKNIQSLKSRYGENE
                     EILSLLNLYHNLLREWSEI"
     gene            7077..7343
                     /gene="ybiI"
                     /locus_tag="JN125_000383"
     CDS             7077..7343
                     /gene="ybiI"
                     /locus_tag="JN125_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-type zinc finger protein YbiI"
                     /protein_id="HAY8870274.1"
                     /translation="MASGWANDDAVNEQINSTIEDAIARARGEIPRGESLYECEECGA
                     PIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGSKDSQLR"
     gene            7627..7857
                     /locus_tag="JN125_000384"
     CDS             7627..7857
                     /locus_tag="JN125_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HAY8870275.1"
                     /translation="MALSTLSFGVFAAEPVTASQAQNMNKIGVVSADGASPLDALEAK
                     LAEKAAAAGASGYSITSATNNNKLSGTAVIYK"
     gene            complement(8085..9170)
                     /locus_tag="JN125_000385"
                     /pseudo
     CDS             complement(8085..9170)
                     /locus_tag="JN125_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308906.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="malate/lactate/ureidoglycolate dehydrogenase"
     gene            complement(9311..10273)
                     /gene="ybiB"
                     /locus_tag="JN125_000386"
     CDS             complement(9311..10273)
                     /gene="ybiB"
                     /locus_tag="JN125_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein YbiB"
                     /protein_id="HAY8870276.1"
                     /translation="MDYRKIIKEIGRGKNHARDLDRDTARGLYAHMLNGEVPDLELGG
                     VLIALRIKGEGEAEMLGFYEAMQNHTIKLTPPAGKPMPIVIPSYNGARKQANLTPLLA
                     ILLHKLGFPVVVQGVSEDPTRVLTETIFELMGITPTLHGGQAQAKLDEHQPVFMPVGA
                     FCPPLEKQLAMRWRMGVRNSAHTLAKLATPFAEGEALRLSSVSHPEYIGRVAKFFSDI
                     GGRALLMHGTEGEVYANPQRCPQINLIDREGMRVLYEKQDTAGSELLPQAKDPETTAQ
                     WIERCLAGSEPIPESLKIQMACCLEATGEAATISDGLARVNQAF"
     gene            complement(10301..12451)
                     /gene="dinG"
                     /locus_tag="JN125_000387"
     CDS             complement(10301..12451)
                     /gene="dinG"
                     /locus_tag="JN125_000387"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase DinG"
                     /protein_id="HAY8870277.1"
                     /translation="MALTAALKAQIAAGYKALQEQIPDFIPRAPQRQMIADVAKTLAG
                     EEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKK
                     IIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLK
                     GDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVARREIQEAE
                     VVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITAPWYRLQL
                     DLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEH
                     RFAMGELPDEVLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRA
                     LGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWR
                     SIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRFE
                     PSIDNEEQHIAEMAAFFREQVESKKHLGMLVLFASGRAMQRFLDYVTDLRLMLLVQSD
                     QPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVI
                     TEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKR
                     LLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR"
     gene            12571..13053
                     /gene="ybiA"
                     /locus_tag="JN125_000388"
     CDS             12571..13053
                     /gene="ybiA"
                     /locus_tag="JN125_000388"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-glycosidase YbiA"
                     /protein_id="HAY8870278.1"
                     /translation="MPVRAQRIQHVMQDTIINFYSTSDDYGDFSNFAAWPIKVDGKTW
                     PTSEHYFQAQKFLDEKYREEIRRVSSPMVAARMGRNRSKPLRKNWESVKEQVMRKALR
                     AKFEQHAELRALLLATAPAKLVEHTENDAYWGDGGNGKGKNRLGYLLMELREQLAIEK
                     "
     gene            complement(13285..14649)
                     /gene="rhlE"
                     /locus_tag="JN125_000389"
     CDS             complement(13285..14649)
                     /gene="rhlE"
                     /locus_tag="JN125_000389"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase RhlE"
                     /protein_id="HAY8870279.1"
                     /translation="MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMAS
                     AQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL
                     NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR
                     MLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASD
                     QVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIH
                     GNKSQGARTRALADFKSSDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIG
                     RTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQ
                     QRGGGGRGQGGGRGQQQPRRGEGGAKSASAKPAEKPSRRLGDAKPAGEQQRRRRPRKP
                     AAAQ"
     gene            14878..15549
                     /gene="cecR"
                     /locus_tag="JN125_000390"
     CDS             14878..15549
                     /gene="cecR"
                     /locus_tag="JN125_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415317.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator CecR"
                     /protein_id="HAY8870280.1"
                     /translation="MNNPAMTIKGEQAKKQLIAAALAQFGEYGMNTTTREIAAQAGQN
                     IAAITYYFGSKEDLYLACAQWIADFIGEQFRPHAEEAERLFAQPQPDRAAIRELILRA
                     CRNMIKLLTQDDTVNLSKFISREQLSPTAAYHLVHEQVISPLHSHLTRLIAAWTGCDA
                     NDTRMILHTHALIGEILAFRLGKETILLRTGWTAFDEEKTELINQTVTCHIDLILQGL
                     SQRSL"
     gene            15549..16547
                     /gene="hlyD"
                     /locus_tag="JN125_000391"
     CDS             15549..16547
                     /gene="hlyD"
                     /locus_tag="JN125_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secretion protein HlyD"
                     /protein_id="HAY8870281.1"
                     /translation="MMKKPVVIGLAVVVLAAVVAGGYWWYQSRQDNGLKLYGNVDIRT
                     VNLSFRVGGRVESLAVDEGDAIKAGQVLGELDHKPYEIALMQVKAGVSVAQAQYDLML
                     AGYRDEEIAQAAAAVKQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQA
                     TLKSAQDKLRQYRSGNREQDIAQAKASLEQAQAQLAQAELNLQDSTLIAPSDGTLLTR
                     AVEPGTVLNEGGTVFTVSLTRPVWVRAYVDERNLDQAQPGRKVLLYTDGRPDKPYHGQ
                     IGFVSPTAEFTPKTVETPDLRTDLVYRLRIVVTDADDALRQGMPVTVQFGNEAGHE"
     gene            16540..18276
                     /locus_tag="JN125_000392"
     CDS             16540..18276
                     /locus_tag="JN125_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308899.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAY8870282.1"
                     /translation="MNDAVITLNGLEKRFPGMDKPAVAPLDCTIHAGYVTGLVGPDGA
                     GKTTLMRMLAGLLKPDSGNATMIGFDPIKNDGALHAVLGYMPQKFGLYEDLTVMENLN
                     LYADLRSVTDEARKQTFARLLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVL
                     LLDEPGVGVDPISRRELWQMVHELAGEGMLILWSTSYLDEAEQCRDVLLMNEGELLYQ
                     GEPKALTQTMAGRSFLMTSPHEGNRKLLQRALKLPQVSDGMIQGKSVRLILKKEATPD
                     DIRHADGMPEININETTPRFEDAFIDLLGGAGTSESPLGAILHTVEGTPGETVIEAKE
                     LTKKFGDFAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQALVLGMD
                     LKESSGKARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKISRMSEAFGL
                     KSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSMVE
                     KGVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDDLKAQSANDEQPDPTMEQAFIQ
                     LIHDWDKEHSNE"
     gene            18269..19402
                     /locus_tag="JN125_000393"
     CDS             18269..19402
                     /locus_tag="JN125_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAY8870283.1"
                     /translation="MSNPILSWRRVRALCVKETRQIVRDPSSWLIAVVIPLLLLFIFG
                     YGINLDSSKLRVGILLEQRSEATLDFTHTMTGSPYIDATISDNRQELIAKMQAGKIRG
                     LVVIPVDFAEQMERANATAPIQVITDGSEPNTANFVQGYVEGIWQIWQMQRAEDNGQT
                     FEPLIDVQTRYWFNPAAISQHFIIPGAVTIIMTVIGAILTSLVVAREWERGTMEALLS
                     TEITRTELLLCKLIPYYFLGMLAMLLCMLVSVFILGVPYRGSLLILFFISSLFLLSTL
                     GMGLLISTITRNQFNAAQVALNAAFLPSIMLSGFIFQIDSMPAVIRAVTYIIPARYFV
                     STLQSLFLAGNIPVVLVVNVLFLIASAVMFIGLTWLKTKRRLD"
     gene            19413..20519
                     /locus_tag="JN125_000394"
     CDS             19413..20519
                     /locus_tag="JN125_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAY8870284.1"
                     /translation="MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLE
                     VTNATIAIYDEDNGEHSVELTQRFARASAFTHVLLLKSPQEIRPTIDTQKALLLVRFP
                     ADFSRKLDTFQTAPLQLILDGRNSNSAQIAANYLQQIVKNYQQELLEGKPKPNNSELV
                     VRNWYNPNLDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQI
                     FIGKAVPALIVATFQATIVLAIGIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISS
                     LCSTQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQNLTWINPIRHFTDITKQIYLK
                     DASLDIVWNSLWPLLVITATTGSAAYAMFRRKVM"
     gene            complement(20481..20891)
                     /locus_tag="JN125_000395"
     CDS             complement(20481..20891)
                     /locus_tag="JN125_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870285.1"
                     /translation="MKWQQRVRVATGLSCWQIMLHLLVVALLVVGWMSKTLVHVGVGL
                     CALYCVTVVMMLVFQRHPEQRWREVADVLEELTTTWYFGAALIVLWLLSRVLENNFLL
                     AIAGLAILAGPAVVSLLAKDKKLHHLTSKHRVRR"
     gene            21024..21785
                     /locus_tag="JN125_000396"
     CDS             21024..21785
                     /locus_tag="JN125_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HAY8870286.1"
                     /translation="MPDQTQQFSFKVLTINIQKGFTAFNRRFILPELRDAVRTVSADI
                     VCLQEVMGAHEVHPLHVENWPDTSHYEFLADTMCRDFAYGRNAVYPEGHHGNAVLSRY
                     PIEHYENRDVSVDGAEKRGVLYCRIVPPMTGKAIHVMCVHLGLREAHRQAQLAMLAEW
                     VNELPDGEPVLVAGDFNDWRQKANHPLKVQAGLDEIFTRAHGRPARTFPVQFPLLRLD
                     RIYVKNASASAPTALPLRTWRHLSDHAPLSAEIHL"
     gene            21782..23023
                     /gene="clsB"
                     /locus_tag="JN125_000397"
     CDS             21782..23023
                     /gene="clsB"
                     /locus_tag="JN125_000397"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase ClsB"
                     /protein_id="HAY8870287.1"
                     /translation="MKCSWREGNKIQLLENGEQYYPAVFKAIGEAQERIILETFIWFE
                     DNVGKQLHAALLAAAQRGVKAEVLLDGYGSPDLSDEFVNKLTAAGVVFRYYDPRPRLF
                     GMRTNVFRRMHRKIVVIDARIAFIGGLNYSAEHMSSYGPEAKQDYAVRLEGPIVKDIL
                     QFELENLPGQSAARRWWRRHHKAEENRQPGEAQVLLVWRDNEEHRDDIERHYLKMLTQ
                     ARREVIIANAYFFPGYRFLHALRKAARRGVRIKLIIQGEPDMPIVRVGARLLYNYLVK
                     GGVQVFEYRRRPLHGKVALMDDHWATVGSSNLDPLSLSLNLEANVIIHDRHFNQTLRD
                     NLNGIIAADCQQVDETMLPKRTWWNLTKSVLAFHFLRHFPALVGWHPAHTPRLTQVDP
                     PAQPTMETQDRVETENTGVKP"
     gene            23023..23979
                     /locus_tag="JN125_000398"
     CDS             23023..23979
                     /locus_tag="JN125_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0104 family protein"
                     /protein_id="HAY8870288.1"
                     /translation="MSKSHPRWRLAKKILTWLFFIAVIVLLVVYAKKVDWEEVWKVIR
                     DYNRVALLSAVGLVVVSYLIYGCYDLLARFYCGHKLAKRQVMLVSFICYAFNLTLSTW
                     VGGIGMRYRLYSRLGLPGSTITRIFSLSITTNWLGYILLAGIIFTAGVVELPDHWYVA
                     QTTLRILGIGLLMIIAVYLWFCAFAKHRHMTIKGQKLVLPSWKFALTQMLISSVNWMV
                     MGAIIWLLLGQSVNYFFVLGVLLVSSIAGVIVHIPAGIGVLEAVFIALLAGEHTSKGS
                     IIAALLAYRVLYYFIPLLLALICYLLLESQAKKLRAKNEAAM"
     gene            complement(24015..24728)
                     /locus_tag="JN125_000399"
     CDS             complement(24015..24728)
                     /locus_tag="JN125_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706665.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HAY8870289.1"
                     /translation="MESYSQNSNKLDFQHETRILNGIWLITALGLVATAGLAWGAKYL
                     EITATKYDSPTMYVAIGLLLVCMYGLSKDINKINAVIAGVIYLFLLSLVAIVVASLVP
                     VYAIIIVFSTAGAMFLISMLAGLLFNVDPGSHRFIIMMTLTGLALVIIVNAALMSERP
                     IWVISCLVIVLWPGIISHGRNKLLELAGKCHSEELWSPVRCAFTGALTLYYYFIGFFG
                     ILAAIAITLVWQRHTRFFH"
     gene            complement(24934..25638)
                     /locus_tag="JN125_000400"
     CDS             complement(24934..25638)
                     /locus_tag="JN125_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HAY8870290.1"
                     /translation="MDRFPRSDSIVQPRAGLQTYMAQVYGWMTVGLLLTAFVAWYAAN
                     SAAVMELLFTNRVFLIGLIIAQLALVIVLSAMIQKLSAGVTTMLFMLYSALTGLTLSS
                     IFIVYTAASIASTFVVTAGMFGAMSLYGYTTKRDLSGLGNMLFMALIGIVLASLVNFW
                     LKSEALMWAVTYIGVIVFVGLTAYDTQKLKNMGEQIDTRDTSNLRKYSILGALTLYLD
                     FINLFLMLLRIFGNRR"
     gene            complement(25775..26227)
                     /gene="moaE"
                     /locus_tag="JN125_000401"
     CDS             complement(25775..26227)
                     /gene="moaE"
                     /locus_tag="JN125_000401"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase catalytic subunit MoaE"
                     /protein_id="HAY8870291.1"
                     /translation="MAETKIVVGPQPFSVGEEYPWLAERDEDGAVVTFTGKVRNHNLG
                     DSVKALTLEHYPGMTEKALAEIVDEARNRWPLGRVTAIHRIGELWPGDEIVFVGVTSA
                     HRSSAFEAGQFIMDYLKTRAPFWKREATPEGDRWVEARESDQQAAKRW"
     gene            complement(26229..26474)
                     /gene="moaD"
                     /locus_tag="JN125_000402"
     CDS             complement(26229..26474)
                     /gene="moaD"
                     /locus_tag="JN125_000402"
                     /EC_number="2.8.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin synthase sulfur carrier subunit"
                     /protein_id="HAY8870292.1"
                     /translation="MIKVLFFAQVRELVGTDATEVAADFPTVEALRQHMAAQSDRWAL
                     ALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPPVTGG"
     gene            complement(26467..26952)
                     /gene="moaC"
                     /locus_tag="JN125_000403"
     CDS             complement(26467..26952)
                     /gene="moaC"
                     /locus_tag="JN125_000403"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HAY8870293.1"
                     /translation="MSQLTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMI
                     IDGRHHKGDVFATARIAGIQAAKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETL
                     CRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFKVEAD
                     D"
     gene            complement(26955..27467)
                     /gene="moaB"
                     /locus_tag="JN125_000404"
     CDS             complement(26955..27467)
                     /gene="moaB"
                     /locus_tag="JN125_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein B"
                     /protein_id="HAY8870294.1"
                     /translation="MSQVSTEFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHV
                     VDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEALLPLFDREVEGF
                     GEVFRMLSFEEIGTSTLQSRAVAGVANKTLIFAMPGSTKACRTAWENIIAPQLDARTR
                     PCNFHPHLKK"
     gene            complement(27489..28478)
                     /gene="moaA"
                     /locus_tag="JN125_000405"
     CDS             complement(27489..28478)
                     /gene="moaA"
                     /locus_tag="JN125_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HAY8870295.1"
                     /translation="MASQLTDAFARKFYYLRLSITDVCNFRCTYCLPDGYKPSGVTNK
                     GFLTVDEIRRVTRAFASLGTEKVRLTGGEPSLRRDFTDIIAAVRENDAIRQIAVTTNG
                     YRLERDVANWRDAGLTGINVSVDSLDARQFHAITGQDKFNQVMAGIDAAFEAGFEKVK
                     VNTVLMRDVNHHQLDTFLNWIQHRPIQLRFIELMETGEGSELFRKHHISGQVLRDELL
                     RRGWIHQLRQRSDGPAQVFCHPDYAGEIGLIMPYEKDFCATCNRLRVSSIGKLYLCLF
                     GEGGVNLRDLLEDDTQQQALEARISVALREKKQTHFLHQNNTGITQNLSYIGG"
     regulatory      complement(28466..28610)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01055"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="molybdenum cofactor riboswitch; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /bound_moiety="molybdenum cofactor"
                     /db_xref="RFAM:RF01055"
     gene            28875..29783
                     /gene="yvcK"
                     /locus_tag="JN125_000406"
     CDS             28875..29783
                     /gene="yvcK"
                     /locus_tag="JN125_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine diphosphate-N-acetylglucosamine-binding
                     protein YvcK"
                     /protein_id="HAY8870296.1"
                     /translation="MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDN
                     GGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLK
                     ALDHLSVRPLEAINLIRNLLKVDTHLIPMSEHPVDLMAIDDQGHEVYGEVNIDQLTTP
                     IQELLLTPNVPATREAVHAINEADLIIIGPGSFYTSLMPILLLKEIAQALRRTPAPMV
                     YIGNLGRELSLPAANLKLESKLAIMEQYVGKKVIDAVIVGPKVDVSAVKERIVIQEVL
                     EASDIPYRHDRQLLHNALEKALQALG"
     gene            complement(29975..31996)
                     /gene="uvrB"
                     /locus_tag="JN125_000407"
     CDS             complement(29975..31996)
                     /gene="uvrB"
                     /locus_tag="JN125_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit B"
                     /protein_id="HAY8870297.1"
                     /translation="MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSG
                     KTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYV
                     PSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLH
                     LTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD
                     EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE
                     NNKLLEEQRLTQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL
                     LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV
                     SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL
                     VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE
                     GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIG
                     ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP
                     MDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS"
     gene            complement(32575..33252)
                     /gene="bioD"
                     /locus_tag="JN125_000408"
     CDS             complement(32575..33252)
                     /gene="bioD"
                     /locus_tag="JN125_000408"
                     /EC_number="6.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706656.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent dethiobiotin synthetase BioD"
                     /protein_id="HAY8870298.1"
                     /translation="MSKRYFVTGTDTEVGKTVASCALLQAAKAVGYRTAGYKPVASGS
                     EKTPEGLRNSDALALQHNSSLQLDYAIVNPYTFAEPTSPHIISAQEGRPIESLVMSAG
                     LRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTA
                     QAIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGK
                     YINLALL"
     gene            complement(33245..34000)
                     /gene="bioC"
                     /locus_tag="JN125_000409"
     CDS             complement(33245..34000)
                     /gene="bioC"
                     /locus_tag="JN125_000409"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HAY8870299.1"
                     /translation="MATVNKQAIAAAFGRAAAHYEQHAELQRRSADVLLAMLPQRKYT
                     HVLDAGCGPGWMSRHWRERHAQVTALDLSPPMLVQARQKDAADHYLAGDIESLPLATA
                     TFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERP
                     HANRFLPPDEIEQSLNGVHYQHHIQPITLWFDDALSAMRSLKGIGATHLHEGRDPRIL
                     TRSQLQRLQLAWPQQQGRYPLTYHLFLGVIARE"
     gene            complement(33987..35141)
                     /gene="bioF"
                     /locus_tag="JN125_000410"
     CDS             complement(33987..35141)
                     /gene="bioF"
                     /locus_tag="JN125_000410"
                     /EC_number="2.3.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-amino-7-oxononanoate synthase"
                     /protein_id="HAY8870300.1"
                     /translation="MSWQEKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNF
                     SSNDYLGLSHHPQIIRAWQQGAEQFGVGSGGSGHVSGYSVAHQALEEELAEWLGYSRA
                     LLFISGFAANQAVIAAMMAKEDRIVADRLSHASLLEAASLSPSQLRRFVHNDVTHLAR
                     LLASPCPGQQLVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRG
                     SCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYNTSMPPAQAQAL
                     RASLAVIRRDEGDARREKLVSLIARFRAGVQDLPFTLADSCSAIQPLIVGDNSRALQL
                     AEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG"
     gene            complement(35138..36178)
                     /gene="bioB"
                     /locus_tag="JN125_000411"
     CDS             complement(35138..36178)
                     /gene="bioB"
                     /locus_tag="JN125_000411"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HAY8870301.1"
                     /translation="MAHRPRWTLSQVAELFEKPLLDLLFEAQQVHRQHFDPRQVQVST
                     LLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAW
                     KNPNERDMPYLEQMVQGVKDLGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEF
                     YGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPES
                     VPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMC
                     FMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQQQRLEQALMT
                     PDTDEYYNAAAL"
     gene            36265..37554
                     /gene="bioA"
                     /locus_tag="JN125_000412"
     CDS             36265..37554
                     /gene="bioA"
                     /locus_tag="JN125_000412"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HAY8870302.1"
                     /translation="MTKDDLAFDQRHIWHPYTSMTSPLPVYPVVSAEGCELILSDGRR
                     LIDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQP
                     LECVFLADSGSVAVEVAMKMALQYWQAKGEVRQRFLTFRNGYHGDTFGAMSVCDPDNS
                     MHNLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMVAHRHEIAAVIIEPIVQGAG
                     GMRMYHPEWLKRIRKMCDREGILLIADEIATGFGRTGKLFACEYAEIAPDILCLGKAL
                     TGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQ
                     QVAAIEVQLREQLAPARDAEMVADVRVLGAIGVVETTRPVNMAALQKFFVEQGVWIRP
                     FGKLIYLMPPYIILPQQLQRLTAAVNRAVQDETFFCQ"
     gene            37613..38089
                     /locus_tag="JN125_000413"
     CDS             37613..38089
                     /locus_tag="JN125_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kinase inhibitor"
                     /protein_id="HAY8870303.1"
                     /translation="MKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTK
                     SFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTG
                     YDGAAPPKGETHRYIFTVHALDVEHIDVDEGASGAMVGFNVHFHSLASASITAMFS"
     gene            38241..39524
                     /locus_tag="JN125_000414"
     CDS             38241..39524
                     /locus_tag="JN125_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative acyl-CoA thioester hydrolase"
                     /protein_id="HAY8870304.1"
                     /translation="MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPI
                     LSAKEAQNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVD
                     AAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPA
                     DWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENT
                     LGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVT
                     NSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFN
                     AFGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVD
                     DNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEAKK"
     gene            complement(39665..41902)
                     /locus_tag="JN125_000415"
     CDS             complement(39665..41902)
                     /locus_tag="JN125_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000477909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydratase"
                     /protein_id="HAY8870305.1"
                     /translation="MFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSSHNTSGNMD
                     KLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGTINGDDHVF
                     GLSAAQRYGGIFVPPHIAVIHQYMCEMMAGGGKMILGSDSHTRYGALGTMAVGEGGGE
                     LVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVKNKVMEFVG
                     PGVSALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQLNPQPMAYY
                     DGCISVDLSAIKSMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAHGKAKLSLL
                     DKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPSSQPVFMDL
                     AKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREGSKPANGQM
                     SAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQGLVKGATQQ
                     PLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRSNQIGLAEF
                     TLSRRDPGYVGRSKATAELENQRLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMV
                     YAVKPGDGSAREQAASCQRVIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEV
                     GDYIYIPGIKAALDNPGTTFKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFN
                     KNRQM"
BASE COUNT         9800 a        11319 c        10815 g         9975 t
ORIGIN      
        1 ccccccagca tctatactta tctttttgct ctgttttctc actggaggag tcatgcggtg
       61 gatcctgttc atcctcttct gcctgctggg cgcacctgcc cacgcggtat ccatacccgg
      121 cgttacaacc acaacgacaa cggactcaac gactgaaccg gccccggaac cggatatcga
      181 acaaaaaaaa gcggcctatg gcgcactggc ggatgtgctg gataacgaca cctcgcgtaa
      241 agaattgatc gaccagttgc gtactgtcgc cgcgacgccc cctgcggaac cggtcccgaa
      301 gatcgtgccg ccgacgctgg ttgaagagca aaccgtgctg caaaaggtca ccgaagtcag
      361 ccgccattat ggtgaagccc tttccgcccg cttcgggcaa ctttatcgca atattaccgg
      421 ctccccgcat aagccgttta atccacaaac attcagcaat gcgctgaccc atttttcaat
      481 gttagcggta ttagtgtttg gtttttactg gctgattcgc ctgtgcgcac tgccgctgta
      541 tcgcaaaatg ggcctgtggg cgcggcaaaa aaatcgtgag cgcagtaact ggttgcagct
      601 tccggcgatg attatcgggg cgtttattat cgacctactg ttactggcac tgacattatt
      661 tgtcggccag gtattaagcg acaacctgaa tgcaggcagt cgcaccatcg ctttccaaca
      721 aagtttgttt ctcaacgcct ttgccctgat tgaatttttc aaagctgtac tacgcctgat
      781 tttttgccca aacgtggctg aactgcgccc gttcacgatt catgacgaga ccgcccgtta
      841 ctggagtcgt cgcctgagct ggttaagcag tttgataggt tatggcctga ttgtggccgt
      901 gccgattatc tctaatcagg tgaatgtaca gataggtgcg ctggcgaacg tcatcattat
      961 gctgtgcatg accgtctggg cgttgtacct gatctttcgc aataaaaaag agattaccca
     1021 acatttgctc aactttgcgg agcattcgct ggcctttttc agcctgttta tccgcgcctt
     1081 tgcgctggtg tggcgctggc tggcaagcgc ctattttatc gtgctgtttt tcttttcgtt
     1141 gttcgatccg ggcaacagcc tgaaatttat gatgggtgca acggtgcgca gcctggcgat
     1201 tattggtatc gcagcgtttg tttccggtat gttttcccgc tggctggcga aaaccatcac
     1261 cctctcgcca catactcagc gtaactatcc ggagttgcaa aaacggctga atggctggct
     1321 ttcggcggcg ctgaaaacgg cgcgtattct gaccgtctgc gtggcggtaa tgttgctgtt
     1381 gagcgcatgg ggattgttcg atttctggaa ctggctgcaa aacggtgcgg ggcagaaaac
     1441 cgtagatatc ctgatccgta tcgcacttat tctttttttc tcggcggttg gctggacggt
     1501 gctcgccagt ttgatcgaaa accggctggc ttcggatatt catggccgcc cgctacccag
     1561 cgcccgtacg cgtaccctgc tgacgctgtt tcgtaacgcg ctggcggtga ttatcagtac
     1621 catcaccatc atgattgtgt tgtcggaaat cggcgtcaat atcgcgccat tgctggcagg
     1681 tgccggggca ttaggtctgg ctatctcgtt tggttcgcaa acgctggtga aagatatcat
     1741 taccggggtg tttattcagt ttgaaaacgg catgaacact ggagatttgg tgactatcgg
     1801 gccgttgacc ggcacagtgg aacggatgtc gattcgctcc gtgggcgtgc gccaggatac
     1861 cggggcgtat cacatcattc cgtggtcttc gataaccacc tttgctaact tcgtccgcgg
     1921 tattggttcg gtagtggcaa actacgatgt tgatcgccat gaagatgctg ataaagccaa
     1981 tcaggcactg aaagatgcgg tagcggaatt gatggaaaac gaagaaattc gcgggctgat
     2041 tattggtgaa ccgaattttg ccgggattgt cggcttaagc aataccgcgt ttacactgcg
     2101 tgtttcgttc accacgctgc cactcaaaca gtggacggta cgctttgccc tcgacagcca
     2161 ggtgaaaaaa catttcgacc tggtgggcgt tcgcgcgcca gtgcagactt attaggtgct
     2221 gcctactccg ggcgcgaccc cggctgaacc gttaccgccg ggggagccaa cgctttaacg
     2281 ctggcgattg acaaaacggc ggcgctgctc gtcgttcata aaggtccagg caataaagcg
     2341 actctgcttt tgcccctggg ccatctcttt ttttaccacc ttcaccgcgc ccacgtcggt
     2401 cagagcacga tacaacggcg gtaagttttc accacgagat accagcgagg taaaccacat
     2461 cacctgcttc gcgaagcctt tgctctcttc aatcatcttt ttgataaagg cgacttcacc
     2521 accttcacac cacaactcct gttgctgacc accaaagttc agtgcatcgt ctttgttcag
     2581 ccccaggtta cggcgtttac gctcactacc tgcccgcgct gcagcggcgg aatcgtggaa
     2641 tggcgggtta cacaaggtcg cgtcgtattg ctcgttttta tggatgatgc cgttaaaaat
     2701 tgccccactt tctttttgcc gacgcagacg aatggcgcgg ttaagccccg gattagcact
     2761 gataatcgcc tgcgcactgc ttaacgcctg gctgctggtt tcactaccgg taaaacgcca
     2821 gccatattca tgtacgccaa tcagcggata aatacagttc gcaccaacgc cgatatccag
     2881 aatgctggca ttcgctggaa ttgttccgct tgcttcagcc agtaaatcgg caaggtgatg
     2941 aatataatcc gcccggcccg gtactggtgg gcagagaaaa ccgtcgggga tatcccagtt
     3001 cgctacggcg taaaaatggg ccagcaacgc cttattgagc gccttcaccg ccagcggatt
     3061 ggcaaagtct acgctttgct ccccggcggg tgtaagcgtg aggaattgcc tgagttcagg
     3121 attgacctga caaagcgtgg cgagatcgta gcggctgtga tgacggttgc gcggatgcaa
     3181 ccccggtttc tgggcggaca tagcattctc ctttaagcag cggcgtaaga tacccgcata
     3241 acgcgacagg gtaaatatct ggctgcgttt atcattcccc aaaaccttaa catggctatg
     3301 gtttatggca attcatcata aaaatcagca ttatgcatgt cattgatttg tcttattttg
     3361 taaaaatata tcgttcaaaa aataagcaca cctctgtcaa ttttttgcgt catttgcatc
     3421 gcgcaggcga cctacactta tcaggcacta cccgttgtat ttatgaggat gtcattatga
     3481 aaaagtgcct cacactactg attgccaccg tcctgagcgg aatctctctc acggcttatg
     3541 ccgcgcaacc gatgagtaac ctggacagcg gtcagctacg gcccgccggt accgtttcgg
     3601 caactggcgc atcaaaccta agcgatctgg aggataaact ggcagaaaaa gcgcgcgaac
     3661 aaggcgcgaa aggttatgtc attaattccg caggcggaaa tgaccagatg ttcggtactg
     3721 caaccatcta caaataaccc caccaacgta actgcattcg cctctggatg cagttttcgc
     3781 ctgttttgta atcaaaaaac atcaaatatg aactcaatgt aaataaatgt atttcttttt
     3841 cgcgcaatgg gtgatagaaa atcgcgccaa gtgataatgc ttatcaaaat tattatcact
     3901 tgcacgaaca ctatcacggg attaacagtg gcatcgcatc cgcagagatg ctttctcgtg
     3961 gcagtgaaaa tttcaacata taagaaaaag tcacctgcaa aatggaaaac aatcgcaatt
     4021 tccctgccag acaatttcat tcgctcacgt tctttgccgg tctttgtatt ggcatcacgc
     4081 ctgtggctca ggcactcgcc gccgaagggc aaactaacgc ggatgacacg ctggttgtcg
     4141 aagcatcaac gccttcgctt tatgcgccac aacaatctgc cgatccgaaa ttctcgcgtc
     4201 cggtagcgga tactacccgc acgatgacgg tgatttctga acaagtgatt aaagatcagg
     4261 gcgcaaccaa ccttaccgac gcgctcaaaa acgtccccgg cgtgggtgcg ttttttgcgg
     4321 gtgagaacgg taactccacc actggcgacg ccatttatat gcgtggtgcc gatacctcta
     4381 acagtattta tattgatggc attcgcgata tcggcagcgt ctcgcgcgac accttcaata
     4441 ccgagcaggt cgaagtgatt aaagggccgt ccggcaccga ctacgggcac agcgcaccga
     4501 cgggctcaat caatatgatc agcaaacagc cgcgcaatga ttccggcatt gacgcctccg
     4561 ccagtattgg cagcgcctgg ttccgccgcg gcacgctgga cgtcaatcag gtcattggtg
     4621 ataccaccgc ggtgcgcctg aatgtaatgg gcgaaaaaac gcacgatgcc ggacgcgaca
     4681 aagtcaaaaa tgagcgttac ggcgtcgccc cttctgtcgc ttttggcctt ggtacagcga
     4741 atcgtttgta tcttaattat ctgcatgtca cccagcacaa cacgccagac ggcggcattc
     4801 cgaccatcgg tttgccgggc tattctgccc catctgcggg aacggcggcc ctgaatcatt
     4861 ccggaaaagt tgatactcat aacttttacg gcacggattc cgattacgac gattcgacca
     4921 ccgacaccgc caccatgcgt tttgagcacg acatcaacga taacaccacc attcgcaata
     4981 ctacccgttg gtcgcgcgta aagcaggatt acctgatgac ggcgattatg ggcggggcgt
     5041 cgaatattac tcagcccacc agcgatgtga atagctggac ctggtcacgc acggcgaata
     5101 ccaaagatgt gagtaataaa attctcacca accagaccaa cctgacctcg acgttctata
     5161 ccggttctat cggtcatgat gtcagtaccg gcgtggaatt tacccgtgaa acgcagacta
     5221 actacggcgt taatccggtg acgttacccg cggtaaatat ttatcatcct gacagcagca
     5281 ttcatcccgg cggcctgacg cgcaacggcg caaacgccaa tggtcagacg gataccttcg
     5341 caatttacgc ctttgatacg ctgcaaatca cccgtgattt tgagctgaac ggcgggatcc
     5401 gtctggataa ttatcatact gaatatgaca gtgccaccgc ctgcggcggc agcggacgcg
     5461 gtgccatcac ctgcccagct ggtgtggcaa aaggttctcc ggtcaccacc gtcgacaccg
     5521 ccaagtcggg caatctggtg aactggaaag ccggggcgct gtatcacctg acggaaaacg
     5581 gtaatgtcta tattaactat gccgtttccc agcagcctcc gggcggcaac aacttcgccc
     5641 ttgcgcagtc tggcagcggt aacagtgcca accgcaccga ttttaaaccg caaaaagcca
     5701 acaccagcga gattggcacc aaatggcagg ttctggataa acgcctgttg ctcaccgccg
     5761 cactgttccg tactgatatc gaaaatgaag ttgagcaaaa tgatgacgga acttactcgc
     5821 aatacggtaa gaaacgtgtc gaaggctatg agatatccgt ggccgggaat atcactcccg
     5881 cgtggcaggt gattggcggc tatacccagc aaaaagcaac catcaaaaac ggcaaagatg
     5941 ttgcccagga tggttcctca tcgctgccgt ataccccgga gcacgccttc accttatgga
     6001 gccagtatca ggcaaccgat gatatctctg ttggcgcggg cgcacgctat atcggcagta
     6061 tgcataaagg ttcagacggc gcggtgggaa cgccagcgtt taccgaaggt tactgggtcg
     6121 ccgatgccaa actggggtat cgggttaatc gcaatctcga cttccagcta aacgtttaca
     6181 gcctgtttga taccgattac gtcgcctcaa tcaacaagag cggctaccgt tatcacccgg
     6241 gcgagccaag aaccttcttg ctcacagcca atatgcattt ctgattcaga tgtggggcgc
     6301 aggccccact ttttggagaa attgtatgat gtaccacatt cccggcgtgt tatcgccaca
     6361 ggacgtcgct cgttttcgcg aacaactgga acaagccgaa tgggtggatg gacgcgtcac
     6421 caccggcgca caaggtgcgc aagttaagaa caatcaacag gtagacaccc gcagcacgtt
     6481 atacgccgcc ctgcaaaatg aggtgctgaa cgcggttaac caacatgctt tattctttgc
     6541 cgcggccttg ccgcgtaccc tttccacgcc gctgtttaat cgctatcaga acaatgaaac
     6601 ctatggtttt catgtggatg gcgcagtacg cagccatcca caaagcggct ggatgcgcac
     6661 tgacctttct gccacgctgt ttttaagcga tccacaaagc tacgacggcg gcgaactggt
     6721 cgttaatgac accttcggac aacatcgggt aaaactcccg gcaggtgatc tcgtgttgta
     6781 tccctccagc agcctgcatt gcgtgacacc cgtaacccgc ggcgtacgag tggcatcatt
     6841 tatgtggatc cagtcgatga tccgcgatga taaaaagcgc gccatgctgt ttgaactaga
     6901 caaaaatatt cagtcgctga aaagccgcta tggtgaaaat gaagagatcc tgtcgctgct
     6961 caatctttat cataatctgc tgcgggaatg gtcggagatc tgacgcttga actgcccagg
     7021 ttcgtcccta tattagctac acttaactgt acaagcattg atatggggag gacgatatgg
     7081 catccggttg ggctaacgat gacgccgtca acgaacagat caacagtaca attgaagatg
     7141 cgattgcccg cgctcggggt gaaattccgc gtggcgaaag cctgtatgaa tgtgaagagt
     7201 gcggtgcccc catcccgcaa gcccgtcggg aagccattcc tggcgtgcgc ttatgtattc
     7261 attgtcagca ggagaaagat ttacaaaaac cagcgtatac aggatataat cgcagaggtt
     7321 cgaaagacag ccagttacgt taactacaac tggcgagatg catagcgagt ataatttgta
     7381 ttttgcgtgg cattccgtgc ctttaacgct gctgtgactg ccacgcggca taaaacaagt
     7441 ccataagtac aacaaataaa tggtttatca gtatgttaga tatcaatcaa tttatttgaa
     7501 caaggcggtc aattctcttc gattttatct ctcgaaaaaa aacgtgatac tcatcacatc
     7561 gacgaaacaa cgtcacttat acaaaaatca cctgcgagag attaattata tactgttgtt
     7621 gctgctatgg ctctttcaac tctatcattt ggcgtgttcg cggcggaacc ggtaacggca
     7681 tcccaggcac agaacatgaa taaaatcggc gtggtttctg ccgatggcgc atcccccctc
     7741 gatgccctgg aagcgaaact ggctgagaaa gccgcggcag ccggtgccag tggatacagc
     7801 atcacttctg ccaccaacaa caataaatta agcggtactg cggtaattta taagtaattc
     7861 gtaggacaga taaggcgttt acgccgcatc cggcaacaga tgcctgatgc gacgctaccg
     7921 cgtcttatca ggcctacaaa atccgaaccg ttggacggat caggcggtta cgctacgtcc
     7981 agcacaagta tttccctgtc tgtttgccga cagacgcata tgctctaacc ctcattgatc
     8041 ctatattacc cttgtttgcc cgtccgttac tggacgggct ttttttagct ggctaactgc
     8101 tgacagaaag cctgtaacgt ctcttccgac ataccaatct gccgcgccgc atcacaaatg
     8161 gcctgccagc ttcccgcatc caatggaatc ccctgctcct gccgttcgcg acgcgtgttc
     8221 acttcccact cgcccggtag caaaatcggc ttatcgtcat catgcggcga ggctttcacc
     8281 cactcggcaa aggcttcagt ctgcgcgcta caatccggcg cgccgaacag ttccgggttg
     8341 atgatgatag tggtcatgca gttaagaatg gcatcgggac tggtttgtaa cgtttcctga
     8401 tgcgtcgttt taccgccaga aagcgccccg ccaagaattt cacacatcgc tgcaagggcg
     8461 tagcctttat gttcggcaaa ggtcaacagc gaccccaacg gcgactcctg cattaccgcc
     8521 ggattggtcg tcggcacgcc gttaacgtca atcaggcaac ctggcggcac ggggacgcct
     8581 ttatgctagg cgacgcgagt tttaccaaat gcgatggcgc tggtggcgta atcaagcaac
     8641 agcgggaaat tatctttacg agggaaaacc acacagaacg gattggtgcc aaagcggctg
     8701 tcgcgaccgt ggaacggtgc gaccattgga ataccgacca cgctaacaaa gtggatagag
     8761 acaaaccccg ccgctgcaca ctgctccgcc cagtaaccga tacggccgat atgatgcgag
     8821 ttatgtagcg ccacggcagc aataccgtgc tgatgcgctt tctcaatccc cagcgccatc
     8881 gcttcgtgtg ccgcgacctg accgaatgcg cgatcgccat cgagcgtgac tgccgccccc
     8941 gcctctttaa cgattttggc atgatggtta atttgcagat gcccctgact ccaggaacgc
     9001 acatagcttg ggatcatgcc aataccatga gaatcatgcc ctgctaggtt tgccgcgatt
     9061 aaatgatcgg ccactaattt cgcttcttgt tcctcgctac ccatctgacg aaatacagcc
     9121 tgaataaaac tgtgcagcgt ctgagcatca aagcgatgac cactttccat ggttaactcc
     9181 tgtttatgtt atgtgtttgt tgttttttta tgctgcacgc cgggcgcggg aaggtcaata
     9241 aagatgcagg aatttcatat tgcggtgggg taaaagccgg atgacatggc tcatccggct
     9301 gagaaaagaa ttaaaatgcc tgattaacgc gcgccaggcc gtcgctgata gttgccgctt
     9361 cacccgtagc ctccaggcag caagccatct ggattttcag cgattcggga atcggttcgc
     9421 tgccagcaag gcaacgctca atccactgcg ccgtggtttc tgggtctttt gcttgtggca
     9481 gtaactcgct accagcagtg tcctgttttt catacagcac ccgcatccct tcacggtcaa
     9541 tgagattgat ctgcgggcag cgctgcggat tagcatacac ttcgccttca gtaccatgca
     9601 ttagtagcgc ccgcccgccg atatcgctaa agaacttcgc gactcgcccg atgtattccg
     9661 gatgcgaaac gctggaaaga cgcagcgcct caccttcggc aaatggcgtc gccagtttcg
     9721 ccagggtatg tgcactgtta cgcacgccca tccgccagcg catcgccagt tgtttttcca
     9781 gcggcgggca aaacgcgccg acaggcataa acaccggttg atgttcgtcg agcttcgcct
     9841 gcgcctgccc gccgtgcaac gttggtgtaa tacccatcag ttcgaaaatg gtttctgtca
     9901 gcacgcgagt tggatcttcg ctaacccctt gaaccaccac aggaaaaccg agtttgtgca
     9961 ggagaatagc caacaacggc gtcaggttgg cctgtttacg cgcgccgttg taactgggga
    10021 tgacaatcgg catcggcttg cctgcaggcg gcgtcagctt gatggtgtga ttttgcatgg
    10081 cttcgtaaaa gccgagcatc tctgcttccc cttccccttt gatacgtagc gcaatcaata
    10141 cgccgcccaa ctcaaggtca gggacttcac cattgagcat atgggcatac agaccgcgcg
    10201 cagtatcccg gtctaaatcg cgcgcgtggt ttttcccgcg cccgatctct ttaatgattt
    10261 tgcgatagtc catttacgac tccttacctg actcacatca ttaacgccgc cgacggcgtg
    10321 gggatttcgt tttttctttc tttttaacta taccttcagg gacttccggt tgctctatcg
    10381 gaaataccgg taatgcatcc agtagtcgct tgccataatt tttggtcagc aagcgtttgt
    10441 cgtagataac cacttcgccc cagcaaccgt ggcttcgaat cagtcgccca acctgctgaa
    10501 tcaggttaaa cgaggcgctc ggcaggcttt gcacctcaaa cggatagcgg ttgaggcttt
    10561 tcagccattc cccttcggtg atcaccaccg ggctgtcgat gggcggaaaa gcgattttgt
    10621 ggatatgcac ctggctgagc agatcacctt tcaaatcaag cccttcggca aatgactgta
    10681 agcccaccag cacactacgc tcaccgttgg caacgcgttt gcggtgcagt tcaactaagc
    10741 gataacgcgg ctgatcgctc tgcaccagca gcatcaggcg taaatccgtc acatagtcga
    10801 gaaagcgctg catcgcccgt ccgctggcaa acagtaccaa cataccgaga tgttttttgc
    10861 tctccacctg ctcacggaaa aaggccgcca tttcggcaat atgctgctct tcgttgtcga
    10921 tggaaggctc aaagcgcatc cggggaataa caattttgcc ctgttcgcag tggttaaagg
    10981 gggaatccag cgccacaaaa cggtcgcccg ctttctcttt cagcccgctc atctcctgca
    11041 aacgcgaaaa actgttcagc gaacgcaagg ttgcggaggt gacaataatg tgcggaatac
    11101 tgcgccacag cagcctttcc agctgatcgc tgacacgtat tcccacgcag tgaaaccaga
    11161 gatgcagctg cccttcgcgc tcttcccgcg tcgcccattt ggtcaccggc gcaccggaag
    11221 attgcgccag agacgccagc cgccagagtt tgctttgcgc ctcgaacatc cccaacgcgc
    11281 ggttcatctg caaaatcaac cgatgcagac gcacaatatc gtggctgccg gttttctcac
    11341 ttaaatcgtt aagaaataac tccgccagac cacgcagcat ctcggtgagt tttgccagcc
    11401 gctggcagat ctccagcact tcatcaggca gttcgcccat cgcaaaacgg tgctctgcct
    11461 cctgcccggc aggcatgtag agattgagaa tgttgtttaa cgaggcgata agctcataca
    11521 actcttcaca atgcgcattc aaacgttcag ggatcgccag cggtgggatg gtcttcgggc
    11581 gaaactgctc catgcaggta gcgaccagtt tcgtgaacaa gtccagctgt agtcgatacc
    11641 agggcgcggt gatttcagcg ctcatctcca gcgcatcccg ggccacatct ggcaggtgat
    11701 gaccttcgtc cagcaccagc agcagatttt tcgggtcagg cagtacggct tcgctttcca
    11761 tcgccgccat caccagcgca tggtttgcca ccaccacttc cgcttcctga atctcccgac
    11821 gagcaacaaa aaacgggcat tcacgatagt agtaacagtt acggttgagg cagctggctt
    11881 tgtcggtact caaacgacgc cagagatcat catctatagc gatatccgta tgatcgcgca
    11941 gaccatccca tttataagtg tcgagatcgc ccttcagctt cgcacaacgt ttttgctctt
    12001 cctgattatt tggcgtcagt tcgtcgtcaa gaaacgccag cagatcctgt tgcgtgggtt
    12061 cagtgctggc gagcgccgtc agattacgcg gacaaacgta gcgcccacgc ccgaaagcgg
    12121 cagtgaattt aagatcggga atgatctttt tcagcagcgg taaatctttg ctgtaaatct
    12181 gatcctgcaa cgccacgttg gcggtactca ccaccagcgt tttttgctct tcgcgggcaa
    12241 tggcgatgcc ggggatcaaa taggagagcg ttttcccaac gccggtgggg gcttcaatcg
    12301 ccagatgccg cccttcttct ccggccagcg ttttggcgac gtccgcaatc atctgccgct
    12361 gcggcgcacg gggaataaag tcggggatct gttcctgaag cgccttatac ccggcggcaa
    12421 tttgcgcttt aagcgcggcg gttaatgcca tgagaaaacc tgaaatactg tataaacagc
    12481 caatattgtg gcatttttcg gttttcaggg gtaatggttt ttctgtttct ggaaagcggc
    12541 tcgcaataac caccaacata atgcggttta atgcccgttc gagcacaaag gatccaacac
    12601 gtcatgcaag acaccatcat aaatttctac agcaccagcg atgactacgg tgatttttct
    12661 aactttgccg cctggcccat caaggttgac gggaaaacct ggcccacctc cgaacactat
    12721 tttcaggcac aaaaattcct tgatgaaaaa taccgcgaag agatccgtcg ggtttcttcc
    12781 cccatggtcg ccgctcgcat ggggcgtaat cgttccaagc cacttcgtaa aaactgggag
    12841 tcggttaaag aacaggtgat gcgtaaagca cttcgtgcta aattcgaaca gcatgcagaa
    12901 ctgcgtgcgc tcttgctggc aaccgcgccc gcaaaactgg ttgagcatac ggaaaacgat
    12961 gcttactggg gagacggtgg taatggtaag ggcaagaatc gactgggcta ccttttaatg
    13021 gagttgcgcg aacaattggc tatagagaag taacgtctcg gtggcttatg ggcggtaaaa
    13081 cagataaatt ttttcccgtg ttctcaaatt gctgacaagt gcttgttgtg aaatgccgga
    13141 tgcggcgtaa acgccttatc cggcctacaa aagcatgcaa attcaatata ttgcagagtt
    13201 aacgtaggcc tgataagcgt agcgcatcag gcagttttgc gtttgttcat cagcctgatg
    13261 ccgggcatag cccggcataa aagattactg cgcagcggca ggtttacgcg gacggcggcg
    13321 acgttgttgt tcgcctgccg gtttggcatc gccgaggcgg cgagacggtt tttctgcagg
    13381 tttcgcgctt gcagattttg cgccaccttc cccacggcgt ggttgctgtt gaccgcgacc
    13441 accaccttgc ccacgaccgc cgccgccacg ttgctggcga ccgttctgga tcggttcggc
    13501 tttgattgac gggtccggct catagcccgg aatcgcaatg cgcgggatct cttttttcag
    13561 cagtttttcg atatcacgca gcagtttgtg ttcatcaaca cacaccagcg acaacgcttc
    13621 accggtagca gccgcacgac cggtacgccc gatacggtgg acataatctt ccggtacgtt
    13681 tggcagttca tagttgacga cgtgcggcaa ctcttcgata tccagaccgc gcgcagcgat
    13741 atcggtcgcc accagtacgc gaatgtcact cgatttaaaa tcagccagcg cacgggtacg
    13801 cgcaccttgc gatttattcc cgtggatcgc cgcactacgg atgccatctt tattgagctg
    13861 ctcagccaga tggttagcgc cgtgtttggt acgggtaaac accagcacct gctgccagtt
    13921 ccctttacca atcatgtgcg acagcaattc gcgtttgcgt ttcttatcga caaagtgaac
    13981 gtgctgggtc acctgatcag acgcggtatt gcggcgtgcc acttcgattt ccagcgggtt
    14041 gtgcaacagt ttttccgcca gggctttaat atcgtcagag aaggtcgcag agaacagcag
    14101 gttctggcgt ttcgctggca gttttgttaa cacgcgacgg atatcgtgga taaagcccat
    14161 gtcgagcatg cggtcagctt catcgaggac gaggatttca acctgatcca gcttcactgc
    14221 attttgatgt tccaggtcca gcaaacgtcc cggtgttgcc accagaacat caacgccgcc
    14281 gcgcagcttc atcatttgcg ggttaatgct gacaccgcca aacaccacca gcgaacgaat
    14341 gttcaaatat ttgctgtaat cacggacatt ttcgccaatc tgcgcagcca gttcacgggt
    14401 cggggtaaga atgagcgcac gtaccggacg acgccctttg gcgtgcggct ggcgagtgat
    14461 caggtgttgc aacagcggca gcgtaaagcc cgctgtttta ccggtaccgg tctgggcgct
    14521 agccatcagg tcgcggcctt ccagcaccgc agggatcgcc tgctgctgaa taggggtggg
    14581 ttcacggtaa ccctgctcgg caacggcgcg caggatatca gggcttaaac ccaaagaatc
    14641 gaaagacata actactccga accgccccga ccgttaccgg tgtagttttc agggagatac
    14701 tgaaaaggaa aatgacaaaa accacaatgt catgagggag cggagtgtag cagtttttgt
    14761 gacgcagcgc ataaattatc cctgtgactg gcgttgctaa aattcttagc catactggac
    14821 aactccccta tggagtcata atcttaatca atcatttgat taagaatgga ctgtgcgatg
    14881 aataatcctg ccatgacaat caagggtgaa caggcgaaaa aacagctgat tgctgccgca
    14941 ctggcgcagt ttggtgaata tggaatgaac accaccactc gcgagatagc cgcccaggcc
    15001 gggcagaata tcgctgccat cacctactac ttcggttcga aagaagattt gtacctcgcc
    15061 tgcgcccagt ggattgccga ttttattggc gagcagttcc gtccgcatgc cgaggaagcc
    15121 gaacgcttgt tcgcgcaacc acagcctgat cgggctgcca tccgtgaact gatccttcgc
    15181 gcctgcagga acatgattaa gctgctcacc caggatgaca ccgtcaacct cagcaagttt
    15241 atctcccgtg agcagctctc tcccacggca gcctaccacc tggtgcacga acaggtgatt
    15301 agtccgctac acagccacct gacacgcctg attgccgcct ggaccggctg cgacgccaat
    15361 gacacccgca tgatccttca tacccatgcg ttgattggtg agattctggc gttccgtctt
    15421 ggcaaagaaa caattctgtt acgtaccggc tggaccgcgt tcgatgaaga aaagaccgaa
    15481 ctgatcaacc agacggtgac ctgtcatatc gacctgattt tgcaaggatt atcgcaaagg
    15541 agtttgtagt gatgaaaaaa cctgtcgtga tcggactggc ggtagtggta cttgccgccg
    15601 tggttgccgg aggctactgg tggtatcaaa gccgccagga taacggcctg aagctgtatg
    15661 gcaacgtgga tattcgtacg gtgaatctta gtttccgtgt tggggggcgc gttgaatcgc
    15721 tggcggtgga cgaaggtgat gcgatcaaag cgggccaggt gctgggcgaa ctggatcaca
    15781 agccgtatga gattgccctg atgcaggtga aagcgggcgt ctcggtggca caggcgcagt
    15841 atgacctgat gcttgccggg tatcgcgatg aagaaatcgc tcaggccgcc gcagcggtga
    15901 aacaggcgca agccgcctat gactatgcgc agaacttcta taaccgccag caaggactgt
    15961 ggaaaagccg caccatttcg gcaaatgacc tggaaaatgc ccgctcctcg cgcgaccagg
    16021 cacaggcaac gctgaaatca gcacaggata aattgcgtca gtaccgttcc ggtaaccgtg
    16081 aacaggacat cgctcaggcg aaagccagcc tcgaacaggc gcaggcgcaa ctggcgcagg
    16141 cggagctgaa tttacaggac tcaacgttga tagcaccgtc tgatggcaca ctgttaacgc
    16201 gcgcggtgga gccaggcacg gttctcaatg aaggtggcac ggtgtttacc gtttcactaa
    16261 cgcgtccggt gtgggtgcgc gcttatgttg atgaacggaa tcttgaccag gcccagccgg
    16321 ggcgcaaagt gctgctttat accgatggtc gcccggacaa gccgtatcac gggcagattg
    16381 gtttcgtttc gccgactgct gaatttaccc cgaaaaccgt cgaaacaccg gatctgcgta
    16441 ccgacctcgt ctatcgcctg cgtattgtgg tgaccgacgc cgatgatgcg ttacgccagg
    16501 gaatgccggt gacggtgcaa ttcggtaacg aggcaggaca tgaatgatgc cgttatcacg
    16561 ctgaacggcc tggaaaaacg ctttccgggc atggacaagc ccgccgtcgc gccgctcgat
    16621 tgtaccattc acgccggtta tgtgacgggg ctggtggggc cggatggtgc aggtaaaacc
    16681 acgctaatgc ggatgctggc gggattactg aaacccgaca gcggcaatgc cacgatgatt
    16741 ggctttgatc caatcaaaaa cgacggcgcg ctgcacgccg tgctcggcta tatgccgcag
    16801 aaatttggtc tgtatgaaga tctcacggtg atggagaacc tcaatctgta cgcggatttg
    16861 cgcagcgtca ccgacgaggc acgtaagcaa acttttgctc gcctgctgga gtttacgtct
    16921 cttgggccgt ttaccggacg cctggcgggc aagctctccg gtgggatgaa acaaaaactc
    16981 ggtctggcct gtaccctggt gggcgaaccg aaagtgttgc tgctcgatga acccggcgtc
    17041 ggcgttgacc ctatctcacg gcgcgaactg tggcagatgg tgcatgagct ggcaggcgaa
    17101 gggatgttaa tcctctggag tacctcgtat ctcgacgaag ccgagcagtg ccgtgacgtg
    17161 ttactgatga atgaaggcga gttgctgtat cagggggaac caaaagccct gacacaaacc
    17221 atggccggac gcagctttct gatgaccagt ccacacgagg gcaaccgcaa actgttgcaa
    17281 cgcgccttga aactgccaca ggtcagcgac ggcatgattc aggggaaatc ggtacgtctg
    17341 atcctcaaaa aagaggccac accagacgat attcgccatg ccgacgggat gccggaaatc
    17401 aacatcaacg aaactacgcc gcgttttgaa gatgcattta ttgatttgct gggtggtgcc
    17461 ggaacctcag aatcgccgct gggtgcaata ttgcatacgg tagaaggcac acccggcgag
    17521 acggtgatcg aagcgaaaga actgaccaag aaatttggtg attttgccgc caccgatcac
    17581 gtcaactttg ccgttaaacg tggggagatt tttggtttgc tggggccaaa cggcgcgggt
    17641 aaatcgacca cctttaagat gatgtgcggt ttgctggtgc cgacttccgg ccaggcgctg
    17701 gtgctgggga tggatctgaa agagagttcc ggtaaagcgc gccagcatct cggctatatg
    17761 gcgcaaaaat tttcgctcta cggcaacctg acggtcgaac agaatttacg ctttttctct
    17821 ggtgtgtatg gcttacgcgg tcgggcgcag aacgaaaaaa tctcccgtat gagcgaggca
    17881 tttggcctga aaagtatcgc ctcccacgcg accgatgaac tgccattagg ttttaaacag
    17941 cggctggcgc tggcctgttc gctgatgcat gaaccggaca ttctgtttct cgacgaacca
    18001 acgtccggcg ttgatcccct cacccgccgc gaattttggc tgcatatcaa cagcatggta
    18061 gagaaaggcg tcacggtgat ggtcaccact cactttatgg atgaagcaga atattgcgac
    18121 cgcatcggcc tggtgtaccg tgggaaatta attgccagcg gcacgccgga tgatttgaaa
    18181 gcgcagtcgg ccaacgacga gcaacccgat cccaccatgg agcaagcctt tattcagttg
    18241 atccacgact gggataagga gcatagcaat gagtaacccg atcctgtcct ggcgtcgcgt
    18301 acgggcgctg tgcgttaaag agacgcggca gatcgttcgc gatccgagta gctggctgat
    18361 tgcggtagtg atcccgctgc tactgctgtt tatttttggt tacggcatta acctcgactc
    18421 cagcaagctg cgggtcggga ttttactgga acagcgtagc gaagcgacgc tggatttcac
    18481 ccacaccatg accggttcgc cctacatcga cgccaccatc agcgataacc gtcaggaact
    18541 gatcgccaaa atgcaggcgg ggaaaattcg cggtctggtg gttattccgg tggattttgc
    18601 ggaacagatg gagcgcgcca acgccaccgc accgattcag gtgatcaccg acggcagtga
    18661 gccgaatacc gctaactttg tacaggggta tgtcgaaggg atctggcaga tctggcaaat
    18721 gcagcgagcg gaggacaacg ggcagacttt tgaaccgctt attgatgtac aaacccgcta
    18781 ctggtttaac ccggcggcga ttagccagca cttcattatc cccggtgcgg tgaccattat
    18841 catgacggtc atcggcgcga ttctcacctc gctggtggtg gcgcgagaat gggaacgcgg
    18901 caccatggag gctctgctct ctacggagat tacccgcacg gaactgctgc tgtgtaagct
    18961 gatcccttat tactttctcg ggatgctggc gatgttgctg tgtatgctgg tgtcagtgtt
    19021 tattctcggc gtgccgtatc gcgggtcgct gctgattctg ttttttatct ccagcctgtt
    19081 tttactcagt accctgggga tggggctgct gatttccacg attacccgca accagttcaa
    19141 tgccgctcag gtcgccctga acgccgcttt tctgccgtcg attatgcttt ccggctttat
    19201 ttttcagatc gacagtatgc ccgcggtgat ccgcgcggtg acgtacatta ttcccgctcg
    19261 ttatttcgtc agcaccctgc aaagcctgtt cctcgccggg aatattccag tggtgctggt
    19321 ggtaaacgtg ctatttttga tcgcttcggc ggtgatgttt atcggcctga cgtggctgaa
    19381 aaccaaacgt cggctggatt agggagaaga gcatgtttca tcgcttatgg acgttaatcc
    19441 gcaaagagtt gcagtcgctg ctgcgcgaac cgcaaacccg cgcgattctg attttacctg
    19501 tgcttattca ggtgattctg ttcccgttcg ccgccacgct ggaagtgact aacgccacca
    19561 tcgccatcta cgatgaagat aacggcgagc attcggtgga gctgacccaa cgttttgccc
    19621 gcgccagcgc ctttactcat gtgctgctgc tgaaaagccc acaggagatc cgcccaacca
    19681 tcgacacaca aaaggcgtta ctcctggtgc gtttcccggc tgacttctcg cgcaaactgg
    19741 ataccttcca gaccgcgccg ttgcagttga tcctcgacgg gcgtaactcc aacagtgcgc
    19801 aaattgccgc caactacctg caacagatcg tcaaaaatta tcagcaggag ctgctggaag
    19861 gaaaaccgaa acctaacaac agcgagctgg tggtacgcaa ctggtataac ccgaatctcg
    19921 actacaaatg gtttgtggtg ccgtcactga tcgccatgat caccactatc ggcgtaatga
    19981 tcgtcacttc actttccgtc gcccgcgaac gtgaacaagg tacgctcgat cagctactgg
    20041 tttcgccgct caccacctgg cagatcttca tcggcaaagc cgtaccggcg ttaattgtcg
    20101 ccaccttcca ggccaccatt gtgctggcga ttggtatctg ggcgtatcaa atccccttcg
    20161 ccggatcgct ggcgctgttc tactttacga tggtgattta cggtttatcg ctggtgggat
    20221 tcggtctgtt gatttcatca ctctgctcga cacaacagca ggcgtttatc ggcgtgtttg
    20281 tctttatgat gcccgccatt ctcctttccg gttacgtttc gccggtggaa aacatgccag
    20341 tatggctgca aaacctgacg tggattaacc ctattcgcca ctttacggac attaccaagc
    20401 agatttattt gaaggatgcg agtctggata ttgtgtggaa tagtttgtgg ccgctactgg
    20461 tgataacggc cacgacaggg tcagcggcgt acgcgatgtt tagacgtaag gtgatgtaac
    20521 ttcttatctt tcgccagcaa agacactacc gccgggccgg caaggattgc cagccctgca
    20581 attgccagca aaaagttgtt ttccagtacg cgggacaaca gccacagcac aatcagcgct
    20641 gcgccaaaat accaggtcgt ggtcagctct tccagcacgt ctgccacctc acgccagcgt
    20701 tgctcggggt ggcgctgaaa caccaacatc atcactaccg tgacacaata cagtgcgcat
    20761 aatcccacgc cgacgtgaac cagagtctta ctcatccagc ccaccaccag cagcgccact
    20821 accagtaaat gcaacataat ctgccagcaa cttagacccg ttgcgacacg aacacgttgt
    20881 tgccacttca tggcttctct cctgaagaat ttatctctac ttactcagag taccgaactt
    20941 tacggaaaat tccgtaagac cgcacctttt tgtgacgccg actacactat ttcaatgaga
    21001 taagaggcaa agacaggaaa attatgcccg atcaaacaca acaattttcg ttcaaggtgc
    21061 tcaccatcaa cattcaaaaa ggttttaccg cgtttaaccg acgcttcatt ttgccggaac
    21121 ttcgcgacgc ggtgcgtacc gtcagcgccg atattgtttg cctgcaggaa gtgatgggcg
    21181 cgcacgaagt tcatccgctg catgtggaaa actggcccga tacctcgcac tacgagtttc
    21241 tcgccgacac tatgtgccgc gattttgcct acggtcgcaa tgccgtatac ccggaagggc
    21301 atcacggcaa cgccgtactg tcgcgttatc ccattgaaca ttatgagaat cgcgatgttt
    21361 cggtcgatgg tgcggaaaag cgcggcgtgc tctactgccg cattgtgccg ccgatgaccg
    21421 gaaaagcgat tcatgtgatg tgcgtacatc tgggcctgcg tgaggcgcac cgtcaggcgc
    21481 agcttgcgat gctcgccgaa tgggtgaatg agctaccgga cggcgaaccg gtattggtgg
    21541 cgggtgattt caatgactgg cggcaaaaag ctaatcatcc gttaaaagtg caggccggac
    21601 tggatgagat ttttacccgc gcccacggac gcccagcgcg cacgtttccg gtgcaatttc
    21661 ctctactacg actggacagg atctacgtca aaaatgccag cgccagcgcg ccaaccgcgt
    21721 tgccgctgcg gacatggcga cacctttctg atcatgcccc tttaagtgcg gagattcatt
    21781 tatgaaatgt agctggcgcg aaggcaataa gatccagttg ctggaaaacg gcgagcaata
    21841 ttatcccgcg gtgtttaagg cgattggcga ggcacaagaa cgcatcattc ttgaaacgtt
    21901 tatctggttt gaggataacg tcggcaaaca gctacatgcg gcactactgg cagcagcgca
    21961 acgcggggtt aaagcggaag tcttgctgga tggctacggt tcgccggatc tcagcgatga
    22021 gtttgtcaat aaactgacgg cagctggcgt agtgttccgc tactacgatc cccgccctcg
    22081 cctttttggt atgcgcacca atgtgtttcg ccggatgcat cgcaaaattg tggtgatcga
    22141 cgcgcgtatc gcctttattg gcgggctgaa ttactccgcc gagcatatgt ccagctacgg
    22201 tccagaggct aaacaggatt acgcggtacg ccttgaaggg ccgattgtca aagatattct
    22261 ccagtttgag ctggaaaacc tgcctggaca gagcgcggca cggcgctggt ggcgacgtca
    22321 tcacaaagcg gaagagaacc gccagccggg agaagcgcag gtattgctgg tctggcgcga
    22381 taacgaagaa catcgcgatg atattgaacg ccattatctg aaaatgctca ctcaggcgcg
    22441 gcgggaagtg attatcgcca acgcctactt cttccccggc tatcgatttt tacacgcctt
    22501 gcgtaaagcg gcacggcgcg gggtgcggat caaactgatc attcagggcg aaccggatat
    22561 gccgattgtc agagtcggtg cgcgcttgct gtataactat ctggttaaag gcggcgttca
    22621 ggtttttgag taccgccgcc gcccgctcca cggcaaagtg gcattgatgg acgatcactg
    22681 ggcgacagta gggtccagta atctcgatcc gctcagtttg tcactgaatc tcgaagcaaa
    22741 tgtcatcatc cacgatcgtc attttaacca gacgctgcgc gataatctga acggcattat
    22801 tgccgcagat tgtcagcagg tggatgaaac catgctgccc aaacgcacct ggtggaacct
    22861 gaccaaaagc gtgctggcgt tccacttttt acgccacttc ccggcgctgg ttggctggca
    22921 tccggcacac acaccacgtc tgacgcaggt tgatcccccc gcacaaccga caatggaaac
    22981 gcaggatcgg gtagaaactg aaaacacggg ggtaaaaccc tgatgagtaa atcacacccg
    23041 cgctggcgct tagcaaagaa gatcctcacc tggctgtttt ttatcgcggt gattgtgttg
    23101 ctggtggtct acgccaaaaa agtggactgg gaagaggtct ggaaggtcat ccgcgactac
    23161 aatcgcgttg cgctgcttag tgcggtcggg ctggtggtcg tcagctatct gatttacggc
    23221 tgctatgacc tgctcgcccg cttttactgc ggtcacaaac tggcgaagcg ccaggtgatg
    23281 ctggtgtcgt ttatctgcta cgccttcaac ctgacgctca gtacctgggt cggcggcatt
    23341 ggtatgcgct atcgtttgta ctcccgacta gggttaccgg gcagcactat tacgcggatt
    23401 ttctcgctca gtattaccac caactggctg ggctatattt tactggcagg gattatcttt
    23461 accgcaggcg tggtggagtt gccggatcac tggtatgtcg ctcaaactac gctgcgtatt
    23521 ctcggcattg gcttactgat gattatcgcg gtttatttgt ggttttgcgc tttcgcgaag
    23581 caccgccata tgaccatcaa agggcaaaag ctggtgctgc cttcatggaa attcgccctc
    23641 actcagatgc tgatttccag cgttaactgg atggtaatgg gggcgattat ctggctgtta
    23701 cttggtcaaa gcgtgaacta tttctttgta ctgggcgtgt tactggttag tagtattgct
    23761 ggcgtcatcg tgcatattcc ggcggggatc ggtgtgctgg aagcggtgtt tatcgcacta
    23821 ctggctgggg agcatacctc gaaagggagc attatcgccg cgctgctcgc ttatcgcgtc
    23881 ctgtattact ttatcccgct gctgctggcg ctgatctgtt acctgctact ggaaagccag
    23941 gcgaagaagc tacgggcgaa aaatgaagcg gcgatgtgaa gtttagttaa gttctttagt
    24001 atctgcattc acgactaatg aaaaaaacgc gtatgccttt gccagacaag cgttatagct
    24061 atcgcggcaa gtatcccaaa gaagccgata aaatagtaat agagtgttaa tgcacctgta
    24121 aaagcgcaac gaaccggact ccacaactct tcactatggc attttcctgc cagttcaagg
    24181 agcttatttc gtccatgcga gataatgcct ggccataaca caatcactaa gcaacttatt
    24241 acccaaatgg gccgttcact cattaatgcc gcattcacga tgattaccag ggccaaccct
    24301 gtcaacgtca tcataatgat aaaacggtga gaaccaggat caacattaaa taataaaccg
    24361 gccagcatac tgattaaaaa catcgcgccc gcagtgctga acacaatgat aatggcatat
    24421 acaggaacta aacttgcaac gacaatcgcc accaaagaga gtaaaaacag atatattacg
    24481 cctgcgatga cggcatttat cttgttgata tccttactta agccatacat acaaactaat
    24541 aataacccta tggcgacata cattgttggt gaatcatatt tggttgccgt aatttcgaga
    24601 tacttagctc cccaggccag tcctgcggtt gccaccaaac ctaaagcggt aatgagccat
    24661 ataccgttta atatcctggt ctcgtgctga aaatctaatt tattgctgtt ttgtgagtat
    24721 gattccattc ttttagttgt ccttagaaaa aatattaata ttcaccatca ataaatttaa
    24781 acccacgcat acaaaatact tttgtattta tggatacgga aaacgcttcc gctcggccat
    24841 aaggcgtatt ttatacctgg tacttgttaa gtgtcgtttt tagtaagaaa agaaatcccg
    24901 acacatggcc gggatattga tggtgaaaaa gaattaacgg cggttgccaa aaattcgcag
    24961 caacatcagg aacaggttga tgaagtccag atacaaggtt aacgcgccaa gaatggaata
    25021 tttgcgcagg ttcgacgtgt cgcgggtatc aatctgctca cccatatttt tcaatttctg
    25081 agtgtcatac gccgtcaatc cgacaaagac aatcacgccg atgtaggtaa ctgcccacat
    25141 caatgcttcg cttttcagcc agaagttgac cagcgatgcc agcacaatgc cgattaacgc
    25201 cataaacagc atattgccaa ggccacttaa atcgcgcttc gtggtgtaac cgtacaggct
    25261 cattgcgccg aacatcccgg cagtaacgac gaaagtactg gcgatagaag cagcggtata
    25321 gacaatgaat atactggaaa gcgtaagacc cgtcagcgcc gaataaagca taaagagcat
    25381 cgtcgttaca cctgcgctca gcttttgaat catcgctgat aacacaataa ccaatgctaa
    25441 ttgcgcgatg atcagaccga ttaaaaagac acggttagtg aacaacagct ccatcacggc
    25501 cgcggaatta gccgcatacc aggcaacaaa tgcggtcagc aacaagccaa cggtcatcca
    25561 gccatagact tgcgccatat aagtttgcaa gccagcccgg ggttgtacga ttgaatcaga
    25621 acgtgggaat ctgtccatga cgatctcctg aagatataag gaatatctta aggatactgc
    25681 aaaatgatga ggctgtgcat cgacgcagcg taaacgcatg tactgagcgg tgaaattgcc
    25741 ggacgcagcg gtgccttatc cggctaacaa aaaactacca gcgttttgcc gcctgctgat
    25801 cgctctcccg agcttcaacc cagcggtcgc cttccggcgt ggcttcgcgc ttccagaacg
    25861 gtgcgcgggt tttgagataa tccataataa actgcccggc ttcaaacgca ctgctgcgat
    25921 gcgcactggt gacaccgaca aaaacgattt catcgcccgg ccataattcc ccgatgcggt
    25981 gaatcgcagt gacgcgcccc agcggccagc ggttacgcgc ttcatcaaca atttctgcca
    26041 gtgctttttc agtcatcccc ggatagtgtt cgagggttaa tgctttgacg ctgtcgccca
    26101 ggttatggtt gcgcacctta ccagtaaagg tgactaccgc accgtcttcg tcacgctccg
    26161 ccagccacgg gtactcttct cctacgctga acggctgcgg accaacaaca attttggttt
    26221 ctgccatctt aacctccggt taccggcggg aagaaagcta cttcgtcgcc gtcagtcagc
    26281 ggatggtcaa aactcaccag cgtctggttg acggcagcca gtaatttgcc atcttccagc
    26341 gccagcgccc agcgatcgct ctgcgcagcc atgtgctggc gtaacgcttc aacagttggg
    26401 aaatccgcag ccacttcggt tgcatctgtt cccaccaact cgcgcacctg cgcgaaaaaa
    26461 agaactttaa tcatccgctt ccaccttaaa gtcacccgac ttgccgccgc tcttcgccag
    26521 caaacgtacc ggaccaatca ccatatcttt ttgcaccgct ttgcacatgt cataaatggt
    26581 cagcgccgcc acggaggccg cggttaatgc ttccatttcg acaccggttt tcccggtcag
    26641 gcggcataag gtttctatac gcacccgatt gtgctccggc tcggcctgta aattgacttc
    26701 aactttgctg agcatcagcg gatgacagag cgggatcaga tcccaggtgc gttttgccgc
    26761 ctgaataccg gcaatacgcg cagtggcaaa tacgtcgcct ttgtggtggc gaccatcaat
    26821 aatcatcgcc agcgtctcgc tgcgcatggt gacaaaggct tccgcccgcg cttcacgcac
    26881 ggtttccgct ttggcggaga catccaccat gtgcgcttcg ccagcggcgt tgatatgggt
    26941 cagttgcgac atacttattt cttcaaatgt ggatggaaat tacacggacg cgtacgggca
    27001 tccagctgcg gcgcgatgat attttcccat gcggtacggc acgctttggt cgaacccggc
    27061 atggcgaaaa tcagcgtttt gttggcgacg cccgctaccg cacgagattg caacgtggaa
    27121 gtgccaatct cttcaaacga caacatccgg aacacttcac caaaaccttc aacttcacgg
    27181 tcgaacaacg gcagcaatgc ttcgggagcc tgatcacctt ccgtcaggcc agtaccaccc
    27241 gtaatcaata ccacttgtac atcgtcgctg gcgatccacg cagatacctg agcgcgaata
    27301 gcgtagcggt tttctttcac aatggcttta tcgacaacgt gatggcccgc ttcttgcgcc
    27361 gaatcgcgca gatagtgacc ggaggtatcg tcttcttcac cgcgacgatt agaaaccgta
    27421 agaatagcaa tacgggtcgg gataaattca gtgcttacct gactcatctg atctctcctt
    27481 ttgacgtttt agccgccaat gtacgataag ttttgcgtaa taccggtgtt gttttgatgc
    27541 aggaaatggg tctgtttctt ctcccgcagc gccactgaaa tacgcgcttc cagcgcctgt
    27601 tgctgggtat cgtcttccag cagatcgcgc aggttaacgc cgccttcacc aaacaggcag
    27661 agatagagtt taccaatgga ggaaacgcgc aggcggttgc aagtggcgca gaagtctttt
    27721 tcatacggca tgataaggcc aatctctccg gcgtaatctg gatggcaaaa gacttgcgcg
    27781 ggaccgtcgc tgcgttgacg taattggtgg atccagccgc gacgcagtag ctcgtcacgc
    27841 agaacctgac cagagatgtg atgcttacgg aagagctcgc tgccctcgcc cgtttccatc
    27901 agttcgatga aacgcagctg gatagggcga tgctggatcc agttcagaaa ggtgtcgagc
    27961 tggtgatgat taacatcacg catcagcacg gtattgactt tgaccttctc aaaaccggcc
    28021 tcaaatgcag catcaatccc tgccatgacc tggttgaatt tatcctgccc ggtaatagcg
    28081 tgaaactggc gggcgtccag actgtcgaca ctgacgttaa tgccagtaag tcccgcatcg
    28141 cgccagttcg ccacatcgcg ttccagacgg taaccattgg tggtgaccgc aatctggcgg
    28201 atagcgtcgt tttcccgcac agcggcgatg atatcggtaa agtcgcggcg taaagacggc
    28261 tcacctcctg tcaggcgcac tttttcggtg cccagactgg cgaaggcgcg cgtaacccgg
    28321 cgaatttcat cgacggtaag aaagccttta ttggtgacgc cgctcggttt gtagccatcc
    28381 ggcaggcagt aggtgcaacg aaagttacac acatcggtaa tcgacaggcg caagtagtaa
    28441 aacttacgcg caaatgcatc agtcagttgt gaagccatgt acacctttcc agatacggga
    28501 ggcgaagtca tttcttcctt cgccctggtg gcaatcttta cgagcattgt cacggccaaa
    28561 gcaccgtatc agttgaccta ggtgcagagg ctagagtgtt tagtggttaa gccgatacta
    28621 gcgtgtaaat gggattttta ccatccacac tttcgctatg caatcatgta tatagcgtca
    28681 tgatcgtgct atttcgctac agaataaggg aaaatggcag ttttactttg atatacatca
    28741 tcagggaggc atagcgtgca tcgtccttta gaggtagaag aaaatagttt gtatcctcaa
    28801 tattggcagg ttaattgctg tttccccgca atttgcgcta ctgtagcgcg gataatctga
    28861 ctccaggaaa ctatatgcgc aatcgtacgc tggctgatct tgatcgtgtc gttgctctcg
    28921 gcggagggca tggactggga cgcgttctct catcactttc gtctttgggt tctcgtttaa
    28981 cgggtatcgt caccaccacg gataatggtg gctcgacggg gcgtattcgc cgttcagaag
    29041 gcggcattgc ctggggcgat atgcgcaact gcctcaacca actgataacg gaaccgagcg
    29101 tcgcctccgc gatgtttgaa taccgttttg gcggcaatgg cgaactttcc gggcacaacc
    29161 ttggaaactt gatgttaaag gcgctggatc accttagcgt gcggcctctg gaagccatca
    29221 atttaattcg taatctgctg aaagtggata cgcatttgat tccaatgtca gagcatcccg
    29281 tcgatctgat ggcgattgac gatcaggggc atgaagttta cggcgaggtc aatatcgacc
    29341 agttaactac gccgattcaa gagttattat taacgccgaa tgtacccgca acgcgtgagg
    29401 cagttcacgc tatcaatgaa gcggatctca tcattattgg gcctggcagt ttttatacca
    29461 gcctgatgcc aattctgctg ctgaaggaaa tcgcccaggc attacgccgc acgccagcgc
    29521 cgatggttta tatcggcaat ctggggcgtg agttgagttt acctgcggct aatttgaagc
    29581 tggaaagcaa gctggcaatt atggagcagt atgttggtaa aaaagtcatt gatgcggtca
    29641 tcgtcgggcc aaaagtggat gtctcggcgg tgaaagagcg gattgtgatc caggaggtac
    29701 tggaggccag cgatattccg tatcgtcatg accgccagtt gttacataac gcgctggaaa
    29761 aggcgttaca ggctttaggt taacggaaat ccgaaggaaa attccggctt cctattgaag
    29821 acaaagtgcg cgttgtttat gccggatgcg gcgtgaacgc cttatccggc ctacaaaccg
    29881 cgcaaattca atatattgag gagaaaatgt aggcctgata agcgtagcgc atcaggctgt
    29941 tttccgtttg tcatcagtct tcttcgctat cctgttacga tgcggcaata aacaactcac
    30001 gcaactgatg caactggtca cgaatttgtg ccgcttcttc gaactccaga ttctgcgcgt
    30061 gttgcatcat cagcccttcc agttcatgga ttttctgctg caacgctttc ggcgacatat
    30121 ccatcggcac attatccggc tcaacaatcg ggcgcgattt tcctctgccc ttcgctttgg
    30181 ttttggcaat gttctgcccc agcgccagga tatcgaccac tttcttgttc aagccttgcg
    30241 gcgtaatgcc gtgttcctcg ttgtacttct gctgtttctc acggcgacgt tcggtttcgc
    30301 caatcgcttt cgccattgat ggggtgatct tatcgccgta gagaatcgct ttaccgttaa
    30361 cgttacgtgc cgcacgacca atggtctgga tcaacgaacg ttcggaacgc aggaagcctt
    30421 ctttgtcagc gtcgaggatc gccaccagcg acacttccgg catatccaga ccttcgcgca
    30481 gtaagttgat ccctaccagc acgtcgaact cacccagacg caagtcgcgg ataatctcca
    30541 tacgttcgac ggtgtcgata tctgagtgaa gataacgcac gcgctcgcca tgttcttcga
    30601 gatattcggt aagatcttcc gccatccgct tggtcagtgt ggtgaccagt acgcgttcgt
    30661 taattgccgc tcgctgacga atctccgaaa gaagatcatc aacctgtgtc gccaccggcc
    30721 gcacttcgat aatcgggtca agcaatccgg ttggacgcac cacctgatcc accacatcgc
    30781 cgccggattt ttccagctcg taattacccg gcgtcgccga aacatagatg gtttgcggcg
    30841 ctaatgcttc gaactcttca aacttaagcg gacggttatc cagcgctgat ggcaggcgga
    30901 agccgtactc caccagtgtc tctttacgcg cccggtcacc gcgatacatg ccgccaattt
    30961 gtggaatggt gacgtgagat tcatcgacga ccagcagccc atcggcaggc aggtaatcaa
    31021 acagcgtcgg cggtggctca cccggtccac gaccggagag gaagcgcgag tagttttcaa
    31081 tccccgaaca gtagcccagc tcgttcatca tctccagatc aaactgggta cgctgggtca
    31141 gccgctgctc ttccagcagt ttgttgtttt ccaacagcac tttgcgtcta gcggccagtt
    31201 cttctttgat ctcctccatc gcctgtacga tgcgctcgcg cggtgtgacg tagtgcgttt
    31261 tcgggtagat ggtaaaacgt ggaatagtgg aaacaatctg cccggtcagc gggtcaaata
    31321 acgacaatcg ttccacttcc tcgtcaaaca gttccacgcg aagtgcaatg tcatccgatt
    31381 ctgccgggaa gatatcaatc acctcgccac gaacgcggaa agtaccacgc tggaatgctt
    31441 gatcattacg agcgtattgc agctccgcca gtcggcgcag aatcgcgcgc tgatcgataa
    31501 tcataccgac cgtgagatgg agcatcatct tgagatataa atcaggatcg cccagaccat
    31561 aaatcgcgga aacagaggcc actacaacca catcacgccg ctccagcatc gctttggtgg
    31621 cggataaacg catctgctca atatgttcgt taaccgaggc atctttctca atgaaagtgt
    31681 cggaactcgg tacataggct tccggctgat agtagtcgta gtaggagacg aaatactcca
    31741 ccgcgttttc cgggaagaac tctttcattt cgccatacag ctgggccgcc agcgttttgt
    31801 tgggcgcaag taccatggtt gggcgctgaa ggtcagcaat gacattggca atggtgaagg
    31861 ttttccctga gccagtcacg ccaagtaacg tctggtgcgc caggccatct tccagcccct
    31921 cttcgagacg tcgaatcgcc tctggctgat cgccagaagg tttaaaagcg gaattcagtt
    31981 tgaacggttt actcatgagt cgctacctga aggagttggg cgggcaggta tgtaatttta
    32041 ctcgtcgtac ttaattatgc caacaaatta tactggataa aaaaacagtt catcaccata
    32101 atatttctga tacagcgtaa actccgctgt caatcatgag caaaatttac tctgtggcga
    32161 gataaaactc cggccttacc gggttatccc caaagcaacg gcttttttaa catttgtcaa
    32221 gatgagtgat gacagtttta tggcaagaga tgcctgttca gtgactgcca ttgcatttat
    32281 ctaaccagtt aaaaaataaa agatatttct ttgagccgtc tttaacgcca attcgcgtgc
    32341 aagccgcgta ttctctcgct tgcctcgtgt tttctaactc taatacacat ggttatccac
    32401 aggaatagtg gataactgtc tccagcccct atcccccgcc gcctgggcaa ttcccacatt
    32461 cgccgcatga ggcggaagta aaattttttt cgtgattatt ttagaattta attggttaaa
    32521 ttgcagtcaa tcgaagacgc gatctcgctc gcaatttaac caaatacaga atggctacaa
    32581 caaggcaagg tttatgtact ttccggttgc cgcattttct ggattttctg caagccaggg
    32641 gatctctccc agcagcggcg cgggaatcat gcgggtgagc gtggtcatat attcagcgtg
    32701 acgttttccc ggaggcgtaa catcgttcgc cacccaaccc gccagagtca gtccggcgtg
    32761 ttgtattgcc tgcgcagtca acatcgcgtg attaatacag ccgagtttca caccaactac
    32821 cagtatcacc ggcagttgtt cctgtgttac ccaatctgca aaagtgaaag tgtcagaaag
    32881 cggcgtaaac cagccgccag caccttccac taacacccag tcagcctgtt gttcaagcgc
    32941 gcgtaatccg gcgctcatta ccaatgattc tatcggcctg ccctcttgcg cactgatgat
    33001 gtgcggcgaa gtgggttctg cgaaggtgta aggatttact attgcgtaat ccagctgcag
    33061 gctgctgttg tgctgtaacg ccagcgcgtc actattacgt aagccttccg gggtcttttc
    33121 gctgccagag gcgaccggtt tataacctgc cgtccgataa cctactgcct tcgcggcttg
    33181 taaaagtgca caactggcga cggttttccc cacttcggta tccgttccgg tgacaaaata
    33241 acgtttactc acgagcaatc actcccaaaa aaagatgata cgtcagagga tatcgcccct
    33301 gttgttgcgg ccaggccagt tgcaatcgct gcaattgcga acgcgttaat attcgcgggt
    33361 cgcgcccttc atgaagatgc gtagcaccga tgcctttcag cgaacgcatg gcactgagcg
    33421 catcatcaaa ccatagtgtg atgggctgaa tatgatgttg ataatgcacg ccgttcagcg
    33481 actgttcgat ttcatctggc ggtaaaaagc gattagcatg cggacgctcg tccaccgcct
    33541 gccacgcctg atgcagttcg ggtaacgatc cctgcaccag cgtggtaaac gccaccacgc
    33601 ctccggggcg caccacccga tacagctcgc ggagtgccgt ggataaatta ccgcaccact
    33661 gcaccgcgag attgctccat gcaagatcga acgtcgcagt cgctaacggc agggattcga
    33721 tatctcccgc cagataatgg tctgcagcat ctttctggcg ggcttgcaca agcattggcg
    33781 gtgagagatc taacgccgtc acctgtgcgt gacgctctcg ccagtggcgg ctcatccagc
    33841 ctggcccaca ccccgcgtcc agtacgtggg tgtatttacg ctgtgggagc attgccagta
    33901 agacgtcagc actccggcgc tgtaactctg cgtgttgctc atagtgcgcg gctgcccgac
    33961 caaatgccgc tgcaatggct tgtttattaa ccgttgccat gcagcacctc cagcagacgg
    34021 tcgatatcct gcatttcatg cgctgcggtt agcgttaagc gcagtcgcgc agtaccagcg
    34081 ggtacggttg gcgggcgaat cgccgtgacc cagcagcctt gctggcgcag tttttctgcc
    34141 agttgtaacg cacggctgtt atcaccgacg atcaatggct ggatggcgct gcatgaatca
    34201 gcaagcgtaa acggcaaatc ctgtactccg gcacgaaaac gcgcaatgag tgacaccagt
    34261 ttttcgcgcc gtgcatcccc ctcatcacgg cgaatgaccg ccagcgacgc acgtaatgcc
    34321 tgcgcctgag cgggcggcat actggtgttg tagataaggt ggcgggcgaa ttgcagcaga
    34381 taatccgcca ccgtactgga gcaaagcacc gctgccccgc tgacgccaaa tcctttgcca
    34441 aaagtcacca ccagcaattc tggttttacc ttttgcagcc agcagctgcc gcgcccctgc
    34501 tccccgataa cgcccgtgcc gtgggcatca tcgaccatca accagccatt gtgctgttgc
    34561 gttacctgct ggatttccgc cagtggcgca ctatcgccgt ccatgctgaa cacgccttct
    34621 gtcaccacca gttgctgccc cggacagggg gaagcaagca gtcgcgccag atgagtgaca
    34681 tcgttatgaa caaaacggcg aagctgcgac gggcttaaac tggcagcctc cagcaatgag
    34741 gcatggctaa gccggtcagc gacaatgcgg tcctcttttg ccatcatcgc ggcaatgacc
    34801 gcctgattag cggcaaaacc agagataaat agcagtgccc gcgaatagcc cagccactcg
    34861 gccagttctt cttccagcgc ctgatgcgca acgctataac cgctgacgtg accggaaccg
    34921 ccgctaccga cgccaaattg ctccgcaccc tgctgccagg cacggataat ttgcggatga
    34981 tggcttaaac ctaaataatc gttactggaa aagttcagat actggcgatc atccgccacc
    35041 agccagcgtc cggctccttg cgccactgga taacggcgac gcagggcatc ggcagcacgc
    35101 cgcgcatcga gcgccgcgtt gattttctcc tgccagctca tagtgctgcc gcgttgtaat
    35161 attcgtcagt atccggggtc atcagcgcct gttcaagacg ttgctgttgt tcgttatccc
    35221 ctgccagcac ggcagtttgc tgcggattta gccccagttt gcggaacagt tgcaggtctt
    35281 tatcttcttc cggattcggc gtggtcagca gtttgcaacc gtagaaaatc gagtttgcgc
    35341 ctgccataaa gcacatcgcc tgagtctgtt cgttcatctg ctcgcgtccg gcagaaaggc
    35401 gcacgtaaga ggtcggcatc atgatccgcg cgaccgcaat ggtgcgaata aaatcaaagg
    35461 catcaacgtc atcgttatcg gcaagcggcg tgcctttcac cttcaccagc atgttgattg
    35521 gcacgctttc cggcggcgtc ggcaggtttg ccagttgcag caataatccg gcgcgatctt
    35581 ttaccgtttc gcctaagccc acaatgccgc cagaacagac tttgatcccg gcatcgcgca
    35641 ctttttccag cgtatcgagg cgttcctgat aagtgcgggt ggtgatgata ttgccgtaaa
    35701 actccggcga ggtgtcgagg ttgtggttgt agtaatccag cccggcgttc gcgaggcgct
    35761 gcgcctgaga ttcactcaac gtgcccagcg tcatacacgc ctccagccct aaatctttta
    35821 ccccctgcac catctgctcc aggtacggca tatcgcgttc gttgggattc ttccacgccg
    35881 cgcccatgca aaaacgcgtc gatcccgccg ctttcgcttt gcgcgccgac tccagcacct
    35941 gttcaacttc catcaaccgc tcggcttcca gcccggtttt atagcgcgag ctttgcgggc
    36001 aatatttgca atcttccggg caagcaccgg ttttaatcga cagcaacgtg ctgacctgca
    36061 cctgacgagg atcgaaatgc tggcgatgca cctgctgcgc ttcaaacagc agatccagca
    36121 acggtttttc aaataattct gcgacttgcg acaatgtcca gcgtgggcgg tgagccatgg
    36181 ggcttctcca aaacgtgttt tttgttgtta attcggtgta gacttgtaaa cttaaatctt
    36241 ttcaatttgg tttacaagtc gattatgaca aaggacgatc ttgcctttga ccaacgccat
    36301 atctggcacc catacacatc catgacctcc ccgctgccgg tttatccggt ggtgagcgcc
    36361 gaaggttgcg agctgatttt gtctgacggc agacgcctga ttgacggtat gtcgtcctgg
    36421 tgggcggcga tccacggcta caatcacccg cagcttaatg cggcgatgaa gtcgcaaatt
    36481 gatgccatgt cgcatgtgat gtttggcggt atcacccatg cgccagccat tgagctgtgc
    36541 cgcaaactgg tggcgatgac gccgcaacca ctggaatgcg tttttctcgc ggactccggt
    36601 tccgtagcgg tggaagtggc gatgaaaatg gcgttgcagt actggcaagc caaaggcgaa
    36661 gtgcgccagc gttttctgac cttccgcaat ggttatcatg gcgatacctt tggcgcgatg
    36721 tcggtgtgcg atccggacaa ctcaatgcac aacctgtgga aaggctatct gccagaaaac
    36781 ctgtttgctc ccgccccgca aagccgcatg gatggtgaat gggatgaacg cgatatggtt
    36841 ggctttgccc gcctgatggt ggcgcatcgt catgaaatcg cggcggtgat cattgaaccg
    36901 attgtccagg gcgcaggcgg gatgcgcatg taccatccgg aatggttaaa acgaatccgc
    36961 aaaatgtgcg atcgcgaagg tatcttgctg attgccgacg agatcgccac cggatttggt
    37021 cgtaccggca aactgtttgc ctgtgaatat gcagaaatcg cgccggacat tttgtgcctc
    37081 ggtaaagcct taaccggcgg cacaatgacc ctttccgcca cactcaccac gcgcgaggtt
    37141 gcagaaacca tcagtaacgg cgaagccggc tgctttatgc acgggccaac ttttatgggc
    37201 aatccgctgg cctgcgcggc tgcaaacgcc agcctggcga ttctcgaatc tggcgactgg
    37261 cagcaacagg tggcggctat tgaagtacag ctgcgcgagc aacttgcccc cgcccgtgat
    37321 gccgaaatgg ttgccgatgt gcgcgtgctg ggggcaatcg gcgtagtcga aacaactcgt
    37381 ccggtgaata tggcggcgct gcaaaaattc tttgtcgaac agggggtatg gatccggcct
    37441 tttggcaaac tgatttacct gatgccgccc tatattattc tcccgcaaca gttgcagcgt
    37501 ctgaccgcag cggttaaccg tgcggtgcag gatgaaacat ttttttgcca ataacgggaa
    37561 gtcagcgtgt gggtttctgg ctacactttc tgcaaactag aaaggagggt tcatgaaact
    37621 catcagtaat gatctgcgcg atggcgataa gctgccgcat cgtcatgtct ttaacggcat
    37681 gggttacgat ggcgataata tttcaccgca tctggcgtgg gatgatgttc ctgcgggaac
    37741 gaaaagtttt gttgtcacct gctacgaccc ggatgcgcca accggctccg gctggtggca
    37801 ctgggtagtt gttaatttac ccgctgatac ccgcgtatta ccgcaagggt ttggctctgg
    37861 tctggtagca atgccagacg gcgttttgca gacgcgtacc gattttggta aaaccggata
    37921 cgatggcgca gcgccgccga aaggcgaaac ccatcgctac atttttaccg ttcacgcgct
    37981 ggatgtagag catattgatg tcgatgaagg agccagcggc gcgatggtcg ggtttaacgt
    38041 tcatttccac tctctggcaa gcgcatcgat taccgcgatg tttagttaat cactctgcca
    38101 gatggcgcaa tgctatctgg tatcacttaa aggtattaaa aacaactttt tgtcttttta
    38161 ccttcccgtt tcgctcaagt tagtataaaa aagcaggctt caacggattc atttttctat
    38221 ttcatagccc ggagcaacct gtgaacacat tttcagtttc ccgtctggcg ctggcattgg
    38281 cttttggcgt gacgctgacc gcctgtagct caacaccacc cgatcaacgt ccttctgatc
    38341 aaactgcgcc tggtacctct tctcgcccga ttctgtcggc aaaagaagcg cagaatttcg
    38401 atgctcaaca ctattttgca tccctgacac caggtgctgc agcgtggaat ccttccccga
    38461 ttaccctgcc tgcgcaacct gactttgttg tcggcccggc gggcactcaa ggtgtaacgc
    38521 ataccacgat tcaggcggcg gtagatgcgg caattatcaa gcgtaccaac aagcgccagt
    38581 atattgccgt gatgcctggt gagtatcagg gaacggtgta tgtccctgct gctccgggtg
    38641 gaattactct gtacggtaca ggtgaaaaac cgattgatgt gaagattggg ctttcccttg
    38701 atgggggcat gagccctgcc gactggcgtc acgacgtcaa cccgcgcggc aaatatatgc
    38761 caggtaaacc agcgtggtat atgtacgata gctgccagag caaacgcagc gacagtatcg
    38821 gtgttctctg ctctgcggtc ttctggtcac aaaacaatgg cctgcaactg caaaacctga
    38881 ccatcgaaaa cacgctgggc gatagcgtag atgcaggtaa ccatccggcg gtggcactgc
    38941 gtactgatgg tgaccaggta cagattaaca acgttaacat tctcggtcgt cagaacacct
    39001 tctttgtcac caacagcggt gtgcagaacc gtctggaaac gaatcgtcag ccgcgtacgc
    39061 tggtgaccaa cagctacatt gaaggggatg tggatatcgt ttctggtcgc ggcgcagtgg
    39121 tgttcgataa caccgaattc cgcgtggtga actcacgtac tcagcaagaa gcgtatgtgt
    39181 ttgcaccggc tacgctgtcc aacatttact acggtttcct cgccgtaaac agccgtttca
    39241 atgctttcgg tgatggtgtg gcgcaactgg gccgctcgct ggatgttgat gccaatacca
    39301 acggtcaggt ggtgatccgt gatagcgcca tcaacgaagg ttttaacacg gctaaaccgt
    39361 gggccgatgc ggtgatctct aatcgtccgt ttgcgggtaa taccggcagc gtagatgata
    39421 acgacgaaat acagcgcaat ctgaatgaca ctaactacaa ccgcatgtgg gaatacaata
    39481 accgcggcgt gggtagtaaa gtggttgcag aggcgaagaa gtaagagcaa ttaactattt
    39541 gccggatgcg gcgtaaacgc cttatccggc ctacggttcg atgcgatttg taggtcggat
    39601 aagatgcgca agcatcgcat ccgacaataa gtgccgaatg cgacctacat tcacatggcg
    39661 ctttttacat ctgacggttt ttattgaagt taatcaaact acccgccttg ataatctcgc
    39721 gctcttcagc agtcagactt tccatataga gcgtaatttc cgttaccggc gcatcttcat
    39781 ggatcacata acctttaaac gtcgtacccg gattatccag cgccgcttta atgccaggga
    39841 tgtaaatgta atcccccact tcaaaggttg gcacttccgc catctgcagc ggtaacatcc
    39901 cccagttgat gacgttagaa cggtagcgtt tagtcgcgta ctcttcggca atattcgcca
    39961 gaccgccaat cacacgctgg cagctcgccg cctgttcacg cgcagaacca tcgcctggtt
    40021 tcaccgcata taccatgctg ccaatttcag tttgcagcgg atcaatatgc tcctgaccag
    40081 caatctgctt aatgcgcgca aacacctctg tcagctcgct gacattcccc gccagacgct
    40141 gattttccag ctcagcagtc gctttacttc tgccaacata accgggatcg cggcgtgaca
    40201 gggtaaactc cgccagacca atctgatttg aacgataaga agaggtttca ccggaaggaa
    40261 tcagttcgtc ggtggtggtc acttcgtcga ggatcttcga gcacactttc aggacgatat
    40321 tgtcagtcag cgcacccaat tccggccagt ctttaatgtt cggtccgtaa atcagcggtt
    40381 gctgagttgc ccctttcaca aggccctgat aaacacggtt tttatacggc gttacatcga
    40441 aggcgtactc cggcacgttg tcccagcaat caagttcgct ggcagaggtt aaatagccac
    40501 cgtttgccgc agtcgcagcg atagaacgag cgtccatcaa cgccaccgct gacatctgcc
    40561 cattagctgg cttagagcct tcgcggttcg ggaagttacg cgtggtgtgg cgaatactta
    40621 atccgttgtt gattggcgta tcgcccgcgc caaagcatgg gccgcagaac gcggttctga
    40681 tgattgcgcc tgcgccaatc aaatctgcta ccacaccttt tttggctaaa tccataaaca
    40741 ccggctgtga tgacgggtaa accgccagcg agaaggtgtc attgccacag gattgaccgc
    40801 gcagtgcatt cgccgccgcg atgacgtttt cgtagttacc gccagaacag cccgcgataa
    40861 tcccctgctg cactttcagg cgaccatttt ccactttatc cagcagcgag agtttggctt
    40921 taccgtgcgc cacgcgttcg gactcaattt caatctcacg cagaatgtcg gtcaggttct
    40981 ggttcagtgt gtcgatttca tacacgttgc tcgggtggaa cggcagcgca atcattgatt
    41041 tgatggcgct taaatcaacg ctgatgcagc catcgtagta cgccatcggt tgagggttaa
    41101 gctggcagta atcctggccg cgaccgtgca gcgccagcca gttatgcact tcttcatcag
    41161 tttgccagac ggagcttaaa caggtggttt ccgtggtcat cacgtcaacg ctgttacgga
    41221 aatcggtaga gagcgcgcta acgcccggtc caacgaactc catgactttg tttttgacgt
    41281 aaccgttttt gaacaccgcg ccaatgatag ccagcgccac atcctgtggc cccacatacg
    41341 gcgcaggttt tccggtcaga tgcaccgcaa ccacgcccgg atagtcgata tcccaggtgt
    41401 cattaagcag ctgttttacc aactcaccgc cgccctcacc gactgccatt gtccctaatg
    41461 caccgtaacg ggtgtggctg tctgacccga ggatcatttt gcccccgcct gccatcatct
    41521 cacacatata ttgatggatg accgcaatat gcggaggcac aaaaataccg ccataacgct
    41581 gagctgccga taaaccaaaa acatggtcat caccgttaat ggtgccgccg acggcgcaga
    41641 gtgagttatg gcagttggtc agcacatacg gcagcgggaa acgttccatt ccggacgctt
    41701 tagcggtctg tacaatacca acaaaggtaa tatcgtgaga ggctaatgaa tcaaacttaa
    41761 ttttaagttt atccatattt ccggacgtat tatgagaaga gagaatagac caggcaatag
    41821 tgcctttttt ggcttcttct tttttaattt cgccggtgaa atgttcttcg gcaattattt
    41881 cgttattact ggcgagaaac acgcctttt
//
LOCUS       DADMHM010000008        39821 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.008, whole genome shotgun sequence.
ACCESSION   DADMHM010000008 DADMHM010000000
VERSION     DADMHM010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 39821)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 39821)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..39821
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.008"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(227..1084)
                     /gene="murI"
                     /locus_tag="JN125_000416"
     CDS             complement(227..1084)
                     /gene="murI"
                     /locus_tag="JN125_000416"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312925.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HAY8870306.1"
                     /translation="MATKLQDGNTPCLAATPSEPRPTVLVFDSGVGGLSVYDEIRHLL
                     PDLHYIYAFDNVAFPYGEKSEAFIVERVVAIVTAVQERYPLALAVVACNTASTVSLPA
                     LREKFDFPVVGVVPAIKPAARLTANSIVGLLATRGTVKRSYTHELIARFANECQIEML
                     GSAEMVELAEAKLHGEDVSLDALKRILRPWLRMKEPPDTVVLGCTHFPLLQEELLQVL
                     PEGTRLVDSGAAIARRTAWLLEHEAPDAKSADANIAFCMAMTPEAEQLLPVLQRYGFE
                     TLEKLAVLG"
     gene            complement(1029..2877)
                     /gene="btuB"
                     /locus_tag="JN125_000417"
                     /pseudo
     CDS             complement(1029..2877)
                     /gene="btuB"
                     /locus_tag="JN125_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418401.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent vitamin B12 receptor BtuB"
     regulatory      complement(2931..3121)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            3235..4335
                     /gene="trmA"
                     /locus_tag="JN125_000418"
     CDS             3235..4335
                     /gene="trmA"
                     /locus_tag="JN125_000418"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HAY8870307.1"
                     /translation="MTPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHY
                     RMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLR
                     HKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTK
                     IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELY
                     CGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNG
                     VREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPCILYISCNPETLCKNLE
                     TLSQTHKVERLALFDQFPYTHHMECGVLLTAK"
     gene            complement(4375..4734)
                     /locus_tag="JN125_000419"
     CDS             complement(4375..4734)
                     /locus_tag="JN125_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YijD family membrane protein"
                     /protein_id="HAY8870308.1"
                     /translation="MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLV
                     LTVYCLHQRYLNRTMPVGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIM
                     VFWIGAKMRNRKQEVAE"
     gene            complement(4734..5384)
                     /gene="fabR"
                     /locus_tag="JN125_000420"
     CDS             complement(4734..5384)
                     /gene="fabR"
                     /locus_tag="JN125_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002460670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor FabR"
                     /protein_id="HAY8870309.1"
                     /translation="MMGIRAQQKEKTRRSLVEAAFSQLSAERSFASLSLREVAREAGI
                     APTSFYRHFRDVDELGLTMVDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGN
                     NPNAFRLLLRERSGTSAAFRAAVAREIQHFIAELADYLELENHMPRAFTEAQAEAMVT
                     IVFSAGAEALDVGVEQRRQLEERLVLQLRMISKGAYYWYRREQEKTAIIPGNVKDE"
     gene            5705..7105
                     /gene="sthA"
                     /locus_tag="JN125_000421"
     CDS             5705..7105
                     /gene="sthA"
                     /locus_tag="JN125_000421"
                     /EC_number="1.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418397.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Si-specific NAD(P)(+) transhydrogenase"
                     /protein_id="HAY8870310.1"
                     /translation="MPHSYDYDAIVIGSGPGGEGAAMGLVKQGARVAVIERYQNVGGG
                     CTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADILNHADNVINQQTRMRQ
                     GFYERNHCEILQGNARFVDEHTLVLDCPDGSVETLTAEKFVIACGSRPYHPTDVDFTH
                     PRIYDSDSILSMHHEPRHVLIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQE
                     MSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTD
                     SLALQNIGLETDSRGQLKVNSMYQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALV
                     KGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMN
                     VGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTM
                     AEAYRVAALNGLNRLF"
     gene            complement(7088..8005)
                     /gene="oxyR"
                     /locus_tag="JN125_000422"
     CDS             complement(7088..8005)
                     /gene="oxyR"
                     /locus_tag="JN125_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator OxyR"
                     /protein_id="HAY8870311.1"
                     /translation="MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELG
                     VMLLERTSRKVLFTQAGMLLVDQARTVLREVKVLKEMASQQGETMSGPLHIGLIPTVG
                     PYLLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDCVILALVKESEAFIEVPL
                     FDEPMLLAIYEDHPWANRECVPMADLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTH
                     FRATSLETLRNMVAAGSGITLLPALAVPPERKRDGVVYLPCIKPEPRRTIGLVYRPGS
                     PLRSRYEQLAEAIRARMDGHFDKVLKQAV"
     gene            complement(8272..9645)
                     /gene="argH"
                     /locus_tag="JN125_000423"
     CDS             complement(8272..9645)
                     /gene="argH"
                     /locus_tag="JN125_000423"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HAY8870312.1"
                     /translation="MALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKAL
                     VTVGVLTAEEQAQLEEALNVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKK
                     LHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRA
                     QPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGF
                     ASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSG
                     SSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDT
                     WLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGVPFREAHHIVGEAV
                     VEAIRQGKPLEDLPLDELQKFSHVIGEDVYPILSLQSCLDKRAAKGGVSPQQVAQAIA
                     FAQARLG"
     gene            complement(9706..10482)
                     /gene="argB"
                     /locus_tag="JN125_000424"
     CDS             complement(9706..10482)
                     /gene="argB"
                     /locus_tag="JN125_000424"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418394.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HAY8870313.1"
                     /translation="MMNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGG
                     GCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGL
                     FLGDGDSVKVTQLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVN
                     ADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAAKAEQLIEQGIITDGMIVKV
                     NAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRILA"
     gene            complement(10490..11494)
                     /gene="argC"
                     /locus_tag="JN125_000425"
     CDS             complement(10490..11494)
                     /gene="argC"
                     /locus_tag="JN125_000425"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HAY8870314.1"
                     /translation="MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKL
                     ISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATAHEVSHDLAPQFLEAGCVVFDL
                     SGAFRVNDATFYEKYYGFTHQYPEQLEQAAYGLAEWCGNKLKEANLIAVPGCYPTAAQ
                     LALKPLIDADLLDLNQWPAINATSGVSGAGRKAAISNSFCEVSLQPYGVFTHRHQPEI
                     ATHLGADVIFTPHLGNFPRGILETITCRLKSGVTQAQVAQVLQQAYAHKPLVRLYDKG
                     VPALKNVVGLPFCDIGFAVQGEHLIIVATEDNLLKGAAAQAVQCANIRFGYAETQSLI
                     "
     gene            11648..12799
                     /gene="argE"
                     /locus_tag="JN125_000426"
     CDS             11648..12799
                     /gene="argE"
                     /locus_tag="JN125_000426"
                     /EC_number="3.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine deacetylase"
                     /protein_id="HAY8870315.1"
                     /translation="MKNKLPPFIEIYRALIATPSISATEEALDQSNADLITLLADWFK
                     DLGFNVEVQPVPGTRNKFNMLASIGQGAGGLLLAGHTDTVPFDDGRWTRDPFTLTEHD
                     GKLYGLGTADMKGFFAFILDALRDVDVTKLKKPLYILATADEETSMAGARYFAETTAL
                     RPDCAIIGEPTSLQPVRAHKGHISNAIRIQGQSGHSSDPARGVNAIELMHDAIGHILQ
                     LRDNLKERYHYEAFTVPYPTLNLGHIHGGDASNRICACCELHMDIRPLPGMTFNELNG
                     LLNDALAPVSERWPGRLTVDELHPPIPGYECPPNHQLVEVVEKLLGAKTEVVNYCTEA
                     PFIQTLCPTLVLGPGSINQAHQPDEYLETRFIKPTRELIIQVIHHFCWH"
     gene            13151..15802
                     /gene="ppc"
                     /locus_tag="JN125_000427"
     CDS             13151..15802
                     /gene="ppc"
                     /locus_tag="JN125_000427"
                     /EC_number="4.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxylase"
                     /protein_id="HAY8870316.1"
                     /translation="MNEQYSALRSNVSMLGKVLGETIKDALGEHILERVETIRKLSKS
                     SRAGNDANRQELLTTLQNLSNDELLPVARAFSQFLNLANTAEQYHSISPKGEAASNPE
                     VIARTLRKLKNQPELSEDTIKKAVESLSLELVLTAHPTEITRRTLIHKMVEVNACLKQ
                     LDNKDIADYEHNQLMRRLRQLIAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWQGVP
                     NYLRELNEQLEENLGYKLPVEFVPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKAT
                     DLFLKDIQVLVSELSMVEATPELLALVGEEGAAEPYRYLMKNLRSRLMATQAWLEARL
                     KGEELPKPEGLLTQNEELWEPLYACYQSLQACGMGIIANGDLLDTLRRVKCFGVPLVR
                     IDIRQESTRHTEALGELTRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWQPSAE
                     TREVLDTCQVIAEAPQGSIAAYVISMAKTPSDVLAVHLLLKEAGIGFAMPVAPLFETL
                     DDLNNANDVMTQLLNIDWYRGLIQGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIK
                     TCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLP
                     EITVSSLSLYTGAILEANLLPPPEPKESWRRIMDELSVISCDVYRGYVRENKDFVPYF
                     RSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQK
                     VVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKEL
                     RNLQEEDIKVVLAIANDSHLMADLPWIAESIQLRNIYTDPLNVLQAELLHRSRQAEKE
                     GQEPDPRVEQALMVTIAGIAAGMRNTG"
     gene            15985..17718
                     /gene="cptA"
                     /locus_tag="JN125_000428"
     CDS             15985..17718
                     /gene="cptA"
                     /locus_tag="JN125_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709755.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase CptA"
                     /protein_id="HAY8870317.1"
                     /translation="MHSTEVQAKPLFSWKALGWALLYFWFFSTLLQAIIYISGYSGTN
                     GIRDSLLFSSLWLIPVFLFPKRIKIIAAVIGVVLWAASLAALCYYVIYGQEFSQSVLF
                     VMFETNTNEASEYLSQYFSLKIVLIALAYTAVAVLLWTRLRPVYIPKPWRYVVSFALL
                     YGLILHPIAMNTFIKNKPFEKTLDNLASRMEPAAPWQFLTGYYQYRQQLNSLTKLLNE
                     NNALPPLANFKDESGNEPRTLVLVIGESTQRGRMSLYGYPRETTPELDALHKTDPNLT
                     VFNNVVTSRPYTIEILQQALTFANEKNPDLYLTQPSLMNMMKQAGYKTFWITNQQTMT
                     ARNTMLTVFSRQTDKQYYMNQQRTQSAREYDTNVLKPFQDVLNDPAPKKLIIVHLLGT
                     HIKYKYRYPENQGKFDGNTDHVPPGLSAEELESYNDYDNANLYNDHVVASLIKDFKAA
                     DPNGFLVYFSDHGEEVYDTPPHKTQGRNEDNPTRHMYTIPFLLWTSEKWQATHPRDFS
                     QDVDRKYSLAELIHTWSDLAGLSYDGYDPTRSVVNPQFKETTRWIGNPYKKNALIDYD
                     TLPYGDQVGNQ"
     gene            17933..18784
                     /locus_tag="JN125_000429"
                     /pseudo
     CDS             17933..18784
                     /locus_tag="JN125_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709754.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
     gene            complement(18771..19112)
                     /locus_tag="JN125_000430"
     CDS             complement(18771..19112)
                     /locus_tag="JN125_000430"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose-like transporter subunit IIB"
                     /protein_id="HAY8870318.1"
                     /translation="MAYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVSIETQGALG
                     TENRLADEDIRRADVALLITDIELAGAERFEHCRYVQCSIYAFLREPQRVMSAVRKVL
                     SAPQQTHLILE"
     gene            complement(19114..19992)
                     /locus_tag="JN125_000431"
     CDS             complement(19114..19992)
                     /locus_tag="JN125_000431"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418387.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[formate-C-acetyltransferase]-activating enzyme"
                     /protein_id="HAY8870319.1"
                     /translation="MTSSAGQRISCNVVETRRNDVARIFNIQRYSLNDGEGIRTVVFF
                     KGCPHLCPWCANPESISGKIQTVRREAKCLHCAKCLRDADECPSGAFERIGRDISLDA
                     LEREVMKDDIFFRTSGGGVTLSGGEVLMQVEFATRFLQRLRLWGVSCAIETAGDAPVS
                     KLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIPRLPLIPG
                     FTLSRENMQQALDVLIPLNIRQIHLLPFHQYGEPKYRLLGKTWSMKDVAAPSSADVAT
                     MREMAERAGFQVTVGG"
     gene            complement(19958..22255)
                     /locus_tag="JN125_000432"
     CDS             complement(19958..22255)
                     /locus_tag="JN125_000432"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HAY8870320.1"
                     /translation="MTNRISRLKTALFANTREISLERALLYTASHRQTEGEPVILRRA
                     KATAYILEHVEISIRDEELIAGNRTVKPRAGIMSPEMDPYWLLKELDQFPTRPQDRFA
                     ISEEDKRIYREELFPYWEKRSMKDFINGQMTDEVKAATSTQIFSINQTDKGQGHIIID
                     YPRLLNHGLGELVAQMQQHCQQQPENHFYQAALLLLEASQKHILRYAVLAETMAANCT
                     DAQRREELLTIAEISRHNAEHKPQTFWQACQLFWYMNIILQYESNASSLSLGRFDQYM
                     LPFYQASLTQGEDPAFLKELLESLWVKCNDIVLLRSTSSARYFAGFPTGYTALLGGLT
                     ENGRSAVNVLSFLCLDAYQSVQLPQPNLGVRTNALIDTPFLMKTAETIRLGTGIPQIF
                     NDEVVVPAFLNRGVSLEDARDYSVVGCVELSIPGRTYGLHDIAMFNLLKVMEICLHEN
                     EGNAALTYEGLLEQIRAKISHYITLMVEGSNICDIGHRDWAPVPLLSSFISDCLEKGR
                     DITDGGARYNFSGVQGIGIANLSDSLHALKGMVFEQQRLSFDELLSVLKANFATPEGE
                     KVRARLINRFEKYGNDIDEVDNISAELLRHYCKEVEKYQNPRGGYFTPGSYTVSAHVP
                     LGSVVGATPDGRFAGEQLADGGLSPMLGQDEQGPTAVLKSVSKLDNTLLSNGTLLNVK
                     FTPATLEGEAGLRKLADFLRAFTQLKLQHIQFNVVNADTLWEAQQRPQDYAGLVVRVA
                     GYSAFFVELSKEIQDDIIRRTAHQL"
     gene            complement(22306..22626)
                     /locus_tag="JN125_000433"
     CDS             complement(22306..22626)
                     /locus_tag="JN125_000433"
                     /EC_number="2.7.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose-like transporter subunit IIB"
                     /protein_id="HAY8870321.1"
                     /translation="MTKIIAVTACPSGVAHTYMAAEALESAAKAKGWEVKVETQGSIG
                     LENELTAEDVASADMVILTKDIGIKFEERFAGKTIVRVNISDAVKRADAIMSKIEAHL
                     AQTA"
     gene            complement(22641..23720)
                     /locus_tag="JN125_000434"
                     /pseudo
     CDS             complement(22641..23720)
                     /locus_tag="JN125_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418384.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit EIIC"
     gene            24029..26530
                     /gene="ptsP"
                     /locus_tag="JN125_000435"
     CDS             24029..26530
                     /gene="ptsP"
                     /locus_tag="JN125_000435"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312903.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HAY8870322.1"
                     /translation="MALIVEFICELPNGVHARPASHVETLCNTFSSQIEWHNLRTDRK
                     GNAKSALALIGTDTLAGDNCQLLISGADEQEAHQRLSQWLRDEFPHCDAPLAEVKSDE
                     LEPLPVSLTNLNPQIIRARTVCSGSAGGILTPISSLDLNALSNLPAAKDVDAEQSALE
                     NGLTLVLKNIEFRLLDSDGATSAILEAHRSLAGDTSLRQHLLAGVSEGLSCAEAIVAS
                     ANHFCEEFARSSSSYLQERALDVRDVCFQLLQQIYGEQRFPAPGKLTQPAICMADELT
                     PSQFLELDKNHLKGLLLKSGGTTSHTVILARSFNIPTLVGVDIDALTPWQHQTIYIDG
                     NAGAIVVEPGEAVARYYQQEARVQDALREQQRVWLTQQARTADGIRIEIAANIAHSVE
                     AQAAFGNGAEGVGLFRTEMLYMDRTSAPGESELYNIFCQALESANGRSIIVRTMDIGG
                     DKPVDYLNIPAEANPFLGYRAVRIYEEYASLFTTQLQSILRASAHGSLKIMIPMISSM
                     EEILWVKEKLAEAKQQLRNEHIPFDEKIQLGIMLEVPSVMFIIDQCCEEIDFFNIGSN
                     DLTQYLLAVDRDNAKVTRHYNSLNPAFLRALDYAVQAVHRQGKWIGLCGELGAKGSVL
                     PLLVGLGLDELSMSAPSIPAAKARMAQLDSLECRKLLNQAMACRTSLEVEHLLAQFRM
                     TQQDAPLVTAECITLESDWRSKEEVLKGMTDNLLLAGRCRYPRKLEADLWAREAVFST
                     GLGFSFAIPHSKSEHIEQSTISVARLQAPVRWGDDEAQFIIMLTLNKHAAGDQHMRIF
                     SRLARRIMHEEFRNALVNAASADAIASLLQHELEL"
     gene            26542..27204
                     /gene="fsa"
                     /locus_tag="JN125_000436"
     CDS             26542..27204
                     /gene="fsa"
                     /locus_tag="JN125_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HAY8870323.1"
                     /translation="MELYLDTANVTEVERLARIFPIAGVTTNPSIIAASKESIWEILP
                     RLQKAIGDEGILFAQTMSRDAQGMVEEAKRLRDAIPGIVVKIPVTSEGLAAIKMLKKE
                     GITTLGTAVYSAAQGLLAALAGAKYVAPYVNRVDAQGGDGIRTVQELQALLEMHAPES
                     MVLAASFKTPRQALDCLLAGCESITLPLDVAQQMLNTPAVESAIEKFEHDWNAAFGTT
                     HL"
     gene            27215..28318
                     /gene="gldA"
                     /locus_tag="JN125_000437"
     CDS             27215..28318
                     /gene="gldA"
                     /locus_tag="JN125_000437"
                     /EC_number="1.1.1.6"
                     /EC_number="1.1.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418380.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional L-1,2-propanediol
                     dehydrogenase/glycerol dehydrogenase"
                     /protein_id="HAY8870324.1"
                     /translation="MDRIIQSPGKYIQGADVINRLGEYLKPLAERWLVVGDKFVLGFA
                     QSTVEKSFKDAGLVVEIAPFGGECSQNEIDRLRGIAETAQCGAILGIGGGKTLDTAKA
                     LAHFMGVPVAIAPTIASTDAPCSALSVIYTDEGEFDRYLLLPNNPNMVIVDTKIVAGA
                     PARLLAAGIGDALATWFEARACSRSGATTMAGGKCTQAALALAELCYNTLLEEGEKAM
                     LAAEQHVVTPALERVIEANTYLSGVGFESGGLAAAHAVHNGLTAIPDAHHYYHGEKVA
                     FGTLTQLVLENAPVEEIETVAALSHAVGLPITLAQLDIKEDVPAKMRIVAEAACAEGE
                     TIHNMPGGATPDQVYATLLVADQYGQRFLQEWE"
     gene            28592..29209
                     /locus_tag="JN125_000438"
     CDS             28592..29209
                     /locus_tag="JN125_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1287 domain-containing protein"
                     /protein_id="HAY8870325.1"
                     /translation="MKASLALLSLLTAFTSHSLKSPAVPPTVVQIQANTNLAIADGAR
                     QQIGNTLFYDPAYVRLTYPGGDVPQERGVCSDVVIRALRSQKVDLQKLVHEDMAKNFA
                     EYPQKWKLKRPDSNIDHRRVPNLETWFSRHNKTRPISKNAGDYQAGDIVSWRLDNGLA
                     HIGVVSDGFARDGTPLVIHNIGAGAQEEDVLFSWRMVGHYRYFVK"
     gene            complement(29236..30183)
                     /gene="yijE"
                     /locus_tag="JN125_000439"
     CDS             complement(29236..30183)
                     /gene="yijE"
                     /locus_tag="JN125_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine transporter YijE"
                     /protein_id="HAY8870326.1"
                     /translation="MSTGKLHTGSLMSAAGKSNPLAISGLVVLTLIWSYSWIFMKQVT
                     SYIGAFDFTALRCIFGALVLFIVLLLRGRGMHPTPFKYTLAIALLQTCGMVGLAQWAL
                     VSGGAGKVAILSYTMPFWVVIFAALFLGERLRRGQYFAILIAAFGLFLVLQPWQLDFS
                     SMKSAMLAILSGVSWGASAIVAKRLYTRHPRVDLLSLTSWQMLYAALVMSVVALLVPQ
                     REIDWQPTVFWALAYSAILATALAWSLWLFVLKNLPASIASLSTLAVPVCGVLFSWWL
                     LGENPGAVEGSGIVLIVLIVLALALVSRKKKEAVSVKSI"
     gene            complement(30244..32424)
                     /gene="katG"
                     /locus_tag="JN125_000440"
     CDS             complement(30244..32424)
                     /gene="katG"
                     /locus_tag="JN125_000440"
                     /EC_number="1.11.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase/peroxidase HPI"
                     /protein_id="HAY8870327.1"
                     /translation="MSTSDDIHNTTATGKCPFHQGGHDQSAGAGTTTRDWWPNQLRVD
                     LLNQHSNRSNPLGEDFDYRKEFSKLDYYGLKKDLKALLTESQPWWPADWGSYAGLFIR
                     MAWHGAGTYRSIDGRGGAGRGQQRFAPLNSWPDNVSLDKARRLLWPIKQKYGQKISWA
                     DLFILAGNVALENSGFRTFGFGAGREDVWEPDLDVNWGDEKAWLTHRHPEALAKAPLG
                     ATEMGLIYVNPEGPDHSGEPLSAAAAIRATFGNMGMNDEETVALIAGGHTLGKTHGAG
                     PTSNVGPDPEAAPIEEQGLGWASTYGSGVGADAITSGLEVVWTQTPTQWSNYFFENLF
                     KYEWVQTRSPAGAIQFDAVDAPEIIPDPFDPSKKRKPTMLVTDLTLRFDPEFEKISRR
                     FLNDPQAFNEAFARAWFKLTHRDMGPKSRYIGPEVPKEDLIWQDPLPQPIYNPTEQDI
                     IDLKFAIADSGLSVSELVSVAWASASTFRGGDKRGGANGARLALMPQRDWDVNAAAVR
                     ALPVLEKIQKESGKASLADIIVLAGVVGVEKAASAAGLSIHVPFAPGRVDARQDQTDI
                     EMFELLEPIADGFRNYRARLDVSTTESLLIDKAQQLTLTAPEMTALVGGMRVLGANFD
                     SSKNGVFTDRVGVLSNDFFVNLLDMRYEWKATDESKELFEGRDRETGEVKYTASRADL
                     VFGSNSVLRAVAEVYASSDAHEKFVKDFVAAWVKVMNLDRFDLL"
     gene            complement(32753..33643)
                     /gene="metF"
                     /locus_tag="JN125_000441"
     CDS             complement(32753..33643)
                     /gene="metF"
                     /locus_tag="JN125_000441"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase"
                     /protein_id="HAY8870328.1"
                     /translation="MSFFHASQRDALNQSLAEVQGQINVSFEFFPPRTSEMEQTLWNS
                     IDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTI
                     ARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYPEVHPEAK
                     SAQADLLNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFK
                     QAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLVGANIAMDMVKILSREGVKDFHFYT
                     LNRAEMSYAICHTLGVRPGL"
     gene            complement(33992..36424)
                     /locus_tag="JN125_000442"
     CDS             complement(33992..36424)
                     /locus_tag="JN125_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000110794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aspartate kinase/homoserine
                     dehydrogenase II"
                     /protein_id="HAY8870329.1"
                     /translation="MSVIAQAGAKGRQLHKFGGSSLADVKCYLRVAGIMAEYSQPDDM
                     MVVSAAGSTTNQLINWLKLSQTDRLSAHQVQQTQRRYQCDLISGLLPAEEADSLISAF
                     VSDLERLAALLDSGINDAVYAEVVGHGEVWSARLMSAVLNQQGLPAAWLDAREFLRAE
                     RAAQPQVDEGLSYPLLQQLLVQHPGKRLVVTGFISRNNAGETVLLGRNGSDYSATQIG
                     ALAGVSRVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPV
                     SGSEIDLQLRCSYTPDQGSTRIERVLASGTGARIVTSHDDVCLIEFQVPASQDFKLVH
                     KEIDQILKRAQVRPLAVGVHNDRQLLQFCYTSEVADSALKILDEAGLPGELRLRQGLA
                     LVAMVGAGVTRNPLHCHRFWQQLKGQPVEFTWQSDDGISLVAVLRTGPTESLIQGLHQ
                     SVFRAEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLAGVVDSRRSLLSYD
                     GLDASRALAFFNDEAVEQDEESLFLWMRAHPYDDLVVLDVTASQQLADQYLDFASHGF
                     HVISANKLAGASDSNKYRQIHDAFEKTGRHWLYNATVGAGLPINHTVRDLIDSGDTIL
                     SISGIFSGTLSWLFLQFDGSVPFTELVDQAWQQGLTEPDPRDDLSGKDVMRKLVILAR
                     EAGYNIEPDQVRVESLVPAHCEGGSIDHFFENGDELNEQMVQRLEAAREMGLVLRYVV
                     RFDANGKARVGVEAVREDHPLASLLPCDNVFAIESRWYRDNPLVIRGPGAGRDVTAGA
                     IQSDINRLAQLL"
     gene            complement(36427..37587)
                     /gene="metB"
                     /locus_tag="JN125_000443"
     CDS             complement(36427..37587)
                     /gene="metB"
                     /locus_tag="JN125_000443"
                     /EC_number="2.5.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine gamma-synthase"
                     /protein_id="HAY8870330.1"
                     /translation="MTRKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAH
                     DYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYG
                     GSYRLFDSLVKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKIC
                     HLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDV
                     VTELAWWTNNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLY
                     HPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLRRFLGGLSLFTLAESLGGVESLI
                     SHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAANKG"
     gene            37864..38181
                     /gene="metJ"
                     /locus_tag="JN125_000444"
     CDS             37864..38181
                     /gene="metJ"
                     /locus_tag="JN125_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015855437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="met regulon transcriptional regulator MetJ"
                     /protein_id="HAY8870331.1"
                     /translation="MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRR
                     QVNNLRHATNSELLCEAFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGINPET
                     WEY"
     gene            38365..38973
                     /locus_tag="JN125_000445"
     CDS             38365..38973
                     /locus_tag="JN125_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiX family permuted papain-like enzyme"
                     /protein_id="HAY8870332.1"
                     /translation="MKNRLLILSLLVSVPAFAWQPQTGDIIFQISRSSQSKAIQLATH
                     SDYSHTGMLVIRNKKPYVFEAVGPVKYTPLKQWIAHGEKGKYVVRRVEGGLSVEQQQK
                     LAQTVKRYLGKPYDFSFSWSDDRQYCSEVVWKVYQNALGMRVGEQQKLKEFDLSNPLV
                     QAKLKERYGKNIPLEETVVSPQAVFDAPQLTTVAKEWPLFSW"
     gene            39118..39821
                     /locus_tag="JN125_000446"
                     /pseudo
     CDS             39118..39821
                     /locus_tag="JN125_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612303.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
BASE COUNT         9753 a        11003 c         9999 g         9066 t
ORIGIN      
        1 ccgcttcgct ttttctcagc ggcgcggggt gcgcataata cgctttcccg ctacagagtc
       61 aagcatttat ttttgctttc tctgtcggaa ttctcaggag aaccccgctg acccggcggc
      121 gtgtttgccg ttgttccgtg tcagtggtgg cgcattatag ggagttattc cggcctgaca
      181 agaggaaatt taaaataatt ttctgaccgc gcaacattca accaaatcag cctaaaactg
      241 ccagtttttc gagcgtttcg aagccgtaac gctgtaaaac gggcaataat tgttcagctt
      301 ctggcgtcat tgccatacaa aaggcaatat tcgcatcggc agattttgca tccggggctt
      361 catgttctaa caaccaggcc gttcggcgag caatcgctgc gccagaatcc actagccggg
      421 ttccctctgg cagcacttgt aacagttctt cttgtagtag agggaaatgg gtgcaaccca
      481 atacaacggt atctggcggc tctttcattc ttaaccacgg gcgtaggata cgttttagtg
      541 catccagaga aacatcttcg ccatgtagct tcgcttcagc caactcaacc atctctgccg
      601 agcccagcat ttctatctgg cattcattag cgaaacgcgc gatcagctca tgagtataag
      661 aacgtttaac tgttccgcgg gttgccagta atccgacaat gctatttgcc gtcagacgtg
      721 cagcaggttt aatcgccggc acgacaccaa caaccggaaa gtcgaacttt tcgcgtaatg
      781 caggaagtga aacggtactg gcagtgttgc aagcgaccac agccagcgca aggggataac
      841 gttcttgcac cgcggtgaca attgccacca ctcgctcaac aataaacgct tcgctttttt
      901 cgccatacgg gaaagcgacg ttatcgaaag cataaatgta atggagatcc ggtaagagat
      961 gccggatctc gtcatagacc gacaacccac cgacgccgga gtcaaacacc agcacggtgg
     1021 gacgtggttc agaaggtgta gctgccagac aaggtgtatt cccgtcctgc agtttggtag
     1081 ccatagactg tctcataatc tttgtcgaac aggttggcta ttttaccacg aactgtcagg
     1141 tgagaggtga ccggatacgc aaccgcaaga tcccacaagc tcacaccgcc cattttaacg
     1201 gtttgataag gataagatga gtaatcctta tcatagcgag tgcctaaata ctgataagta
     1261 ataccccagt cgaagtcata caactgccag tcgagctggt atttcacctg ctgtttagca
     1321 cggcgtaaca acggcgtgtc ggtaatcgca ttgcgcgcat cgacataatc ataactcaca
     1381 gtatgcgtca gtggtccggt atcaaaattg gcggtcgcct cgacgccctt aatccgcgct
     1441 ttcccttcgt tgtaatattt cagggtgtga tcatcataat cgatcaagtc actgacatcg
     1501 ttacgatatc cggaaatacg ccagttcacc ccagcggtta agccttcaaa cgcgccttcc
     1561 cactgtttgc ttttctccgg gtccagattc ggatttccgt agaagccata cagttgcccc
     1621 aaatttggtg ccttataaga tgtcccgtag gaagcaatga agcgataacc ttcgatgaat
     1681 tcccaaccgg cgctggtttg ccaggttcca tgacgaccaa actgtgagtt atcgtcactg
     1741 cgtgctgcgc cttcaaaggt aaaatcgccg acttgttgca gcccggtcag atagatgccg
     1801 gtattacgtt gatcatatcc atcctcaaca taacctgtac ccggcgtcgt agtctgtttc
     1861 tgccagtcga cacccgcacc aatactaccg tgaccaacga tgacattgtt tgcccactgg
     1921 acggtgtatt gcttcatctc atcgagcgtc gccgacgaat cataacgacc ataatgggga
     1981 tcgtagttgt aatctttgct atggctatag ctggtaatga gttgtgattt aatcagttcg
     2041 ccgttatagc gcagcccggc gtcccaactt tggctataga gtttacgggt atcgagcaac
     2101 ggtgaaccgg gagaataata cgcgtcataa ttggtacggt tatcatagcc atagccgcgc
     2161 acaaagccgc tccaggcatc agtaaagtta tgctccagcg cgccataaag cgttttactt
     2221 aaaaaaccat cgttatctgt ctgcgcttgc gttccggtat taccataggc aacaacatca
     2281 taaccatgag tatgggcata atcgcccaac agcgttaccc gtgtcttatc ccccagttgt
     2341 tgctgcgtag agacatcata gttctgataa ctattgcttc cccaccctgc tgaaatttcc
     2401 gttccgggtt catcgcgcgt cgtgatgata ttcaccaccc cgcctattgc atcggaacca
     2461 taaacagcgg agcgcggccc acggatatat tcaacacgct ggacaagcgc acgcaatagg
     2521 gaactggcta aggtcggcag aaccactcac ccccgccaga ttcaggcgta cgccatcaat
     2581 taacaccaac acatgactgg catttgtacc gcgaataaaa atagatgaga gctgacctga
     2641 accgccgttt tgggtgatat cgacgcccgg aagacggcgc agcacatcat tgaccgaggt
     2701 cgactgccag cggtcgatat cctgacgggt cacaacggtg gttggtgcaa gcacagtgct
     2761 gcgcggctgt tcaaaacggt tagcagtaac gacgagagta tccgggctgg tatcctgtgc
     2821 ccaagcggaa aaggctgtga cagaacacgc cgtcagcagc gaagcttttt taatcattgt
     2881 aaagcatcca caatagaaga aggatgccgc aggtttcatc aatattacgc gatgatgaga
     2941 cgttggccgg caggtcttcg ggcttggagg ggtatctaag atactaagag atgatgactt
     3001 cccaccggat ggcagtgtcc gcataacgca atcatcgcac ctttccttac cgctgcgcgt
     3061 cagctccaga ttcgcactgg attccctatt aactcacagg accggcaagt ggatgctaca
     3121 ggttgtaaca agttactgtc cagacgtagc tcacaaatag gaattcatca agatctggac
     3181 atctgatgag caatccctac aatcgccgcg tactttaatt tttcaggata catcatgacc
     3241 cccgaacacc ttccaacaga acagtatgaa gcgcagttag ccgaaaaagt ggtacgtttg
     3301 caaagtatga tggcaccgtt ttctgacctg gttccggaag tgtttcgctc gccggtcagt
     3361 cattaccgga tgcgtgcgga gttccgcatc tggcacgatg gcgatgacct gtatcacatc
     3421 attttcgatc aacaaaccaa aagccgtatc cgcgtggata gcttccccgc cgccagtgaa
     3481 cttatcaacc agttgatgac ggcgatgatt gcgggtgtgc gtaataatcc cgttctgcgc
     3541 cacaagttgt tccagattga ttacctcacc acgctgagta atcaggcggt ggtttccctg
     3601 ctataccata agaagctgga tgatgagtgg cgtcaggaag cggaggccct gcgcgatgca
     3661 ctgcgcgcgc agaatctgaa tgtgcatctg attggtcggg caacgaaaac caaaatcgag
     3721 ctggatcaag attacatcga cgagcgtctg ccggtcgcag ggaaagagat gatctaccgt
     3781 caggtagaaa acagctttac ccagccgaac gcggcgatga atattcagat gctggaatgg
     3841 gcgctggacg taaccaaagg ctcaaaaggc gatttactgg agctgtactg cggcaacggt
     3901 aacttttcat tagcgctggc gcgcaatttt gatcgggtat tagccaccga aatcgctaag
     3961 ccgtcggttg ctgctgcgca atacaacatc gcagctaacc atattgataa cgtacaaatt
     4021 attcgtatgg cggcagaaga atttactcag gcgatgaatg gtgtgcgcga gtttaaccgc
     4081 ctgcaaggga tcgacttaaa gagttatcag tgcgaaacca tttttgtcga cccaccgcgc
     4141 agcggtctgg acagtgaaac cgagaaaatg gtgcaggcgt atccgtgtat tttgtacatc
     4201 tcctgtaacc cggaaacgtt atgcaagaat ctggaaacat taagccagac gcacaaggtc
     4261 gaacgtctgg ctctgtttga tcagttcccc tacacgcacc atatggagtg cggcgtatta
     4321 ctgaccgcga agtaaaaccc atgccggatg cgccagcatc cggcataata ccgattactc
     4381 agcaacttcc tgcttacggt tacgcatctt cgcgccaatc cagaacacca taatgacgga
     4441 gagtactgcc gggaagaagt tagagccgat atccggatat tccgcacgaa ctaccgtgct
     4501 gtacagcagt acgccgagaa taaaacaggc agctgccaga cccggcaagc ctaccggcat
     4561 agtgcgatta agataacgtt gatgcaggca gtaaaccgtc agcaccaggg aaataatcgg
     4621 gaatacagaa aatggcacaa tggagctaaa cagcgctgcg aaagtaccat taatcgataa
     4681 gccagcaact aacgccagca gcagcgtacc tctatcttga tttgcttgtt tcattactcg
     4741 tccttcacat ttcccggaat aattgcggtt ttctcttgtt cacggcgata ccagtaataa
     4801 gcccctttcg aaatcattcg cagttgcagt accagtcgct cttctaattg ccgacgttgt
     4861 tcgacgccga cgtccaacgc ctcggcaccc gcactgaaga caattgtcac cattgcttcg
     4921 gcttgcgctt cagtaaacgc acgcggcata tggttttcga gttccagata gtccgcaagt
     4981 tccgcaatga agtgctgaat ttcacgcgca acggcggcac gaaacgcagc ggaggtgccg
     5041 gagcgttccc gcaataataa ccggaaggcg ttaggattat taccgatgaa ctccataaat
     5101 gtggagaccg aggtgcggat cacactcccg cctttggcga tacgctgacg cgcctggcgc
     5161 atgagttggc gtagcattaa accgctctca tcaaccatgg tcagacccag ttcgtctacg
     5221 tcgcggaaat gccgataaaa agaggtggga gcaatgcccg cttcacgcgc cacttcacgc
     5281 aaactcaggc tggcgaagct gcgttcagca cttaattggc taaatgcggc ttccaccagc
     5341 gaacggcggg ttttttcttt ttgttgcgct cttatgccca tcacgatgtc tgaatccttg
     5401 ccaaaagtac tgctggcact ataccagaga atgaacatac tggattgctc cagtattgtg
     5461 aatgaacggt aacgcaataa aacatattta ctggccggtt cttttacgta cagcggaaac
     5521 ctgccgctta aacggagagt atcgtcgata aaaatccaat aaaacgtcag ggcaaaagta
     5581 agaaacagac aaagcaaagg ccgctcagga tatagccaga taaatgacgg ggatcaattg
     5641 gcttacccgc gataaaatgt taccattctg ttgcttttat gtataagaac aggtaagccc
     5701 taccatgcca cattcctacg attacgatgc catagtaata ggttccggcc ccggcggcga
     5761 aggcgctgca atgggcctgg ttaagcaagg tgcgcgcgtc gcagttatcg agcgttatca
     5821 aaatgttggc ggcggttgca cccactgggg caccatcccg tcgaaagctc tccgtcacgc
     5881 cgtcagccgc attatagaat tcaatcaaaa cccactatac agcgaccatt cccgactgct
     5941 ccgctcttct tttgccgata tccttaacca tgccgataac gtgattaatc aacaaacgcg
     6001 catgcgtcag ggattttacg aacgtaatca ctgtgaaata ttgcagggga acgctcgctt
     6061 tgttgacgag catacgttgg tgctggattg cccggacggc agcgtcgaaa cactaaccgc
     6121 tgaaaaattt gttattgcct gcggctctcg tccatatcat ccaacagatg ttgatttcac
     6181 ccatccacgc atttacgaca gcgactcaat tcttagcatg caccacgaac cgcgccatgt
     6241 acttatctat ggtgctggag tgatcggctg tgaatatgcg tcgatcttcc gcggtatgga
     6301 tgtaaaagtg gatctgatca acacccgcga tcgcctgctg gcatttctcg atcaagagat
     6361 gtcagattct ctctcctatc acttctggaa cagtggcgta gtgattcgtc acaacgaaga
     6421 gtacgagaag atcgaaggct gtgacgatgg tgtgatcatg catttgaagt cgggtaaaaa
     6481 actgaaagct gactgcctgc tctatgccaa cggtcgcacc ggtaataccg attcgctggc
     6541 gttacagaac attgggctgg aaactgacag ccgcggacag ctgaaggtca acagcatgta
     6601 tcagaccgca cagccgcacg tttacgcggt gggcgacgtg attggttatc cgagcctggc
     6661 atcagcggcc tatgaccagg ggcgcattgc cgcgcaggcg ctggtaaaag gcgaagccac
     6721 cgcacatctg attgaagata tccctaccgg catttacacc atcccggaaa tcagctctgt
     6781 gggcaaaacc gaacagcagc tgaccgcaat gaaagtgcca tatgaagtgg gccgcgccca
     6841 gtttaaacat ctggcacgcg cacaaatcgt cggcatgaac gtgggcacgc tgaaaatttt
     6901 gttccatcgg gaaacaaaag agattctggg tattcactgc tttggcgagc gcgctgccga
     6961 aattattcat atcggtcagg cgattatgga acagaaaggt ggcggcaaca ctattgagta
     7021 cttcgtcaac accaccttta actacccgac gatggcagaa gcctatcggg tagctgcgct
     7081 aaatggctta aaccgcctgt tttaacactt tatcgaaatg gccatccatt cttgcgcgga
     7141 tggcctctgc cagctgctca tagcggctgc gcagcggtga gccaggacga taaaccaggc
     7201 caatcgtgcg gcgaggttcc ggcttaatac acggcaaata aacaacccca tcgcgtttgc
     7261 gctccggcgg cacagccagc gcaggcagta aagtgatccc gctacctgcc gccaccatgt
     7321 tacgcagtgt ctccaggctg gtcgcgcgga agtgtgtatc ttcatccgcc ccggcttcaa
     7381 agcagaaacc cattgcctga tcgcgcaaac agtgaccatc ttccagcatc agcagttttt
     7441 cccctgccag atcggccatc ggtacgcatt cgcggttcgc ccacgggtga tcttcataga
     7501 tagccagcaa cattggctca tcaaacaacg gcacttcaat gaatgcttcg ctctctttca
     7561 ccagcgcgag gatcacgcaa tcgagtttgc cgctgtccag ttgcgccagt aactggtggg
     7621 tctgtgcttc atgcagatac atttccagct ttggaaatgt ctggtgcagc atcgggataa
     7681 tatgcggcag caggtacggt ccaaccgtag gaatcaaacc aatatgcagc ggtccggaca
     7741 tcgtctcgcc ctgctggctt gccatctctt taaggacttt cacctcacgc agcacggtac
     7801 gcgcctgatc caccagcagc attcccgcct gggtgaacaa cactttacgg ctggtccgct
     7861 ccagcaacat cacgcccagc tcatcttcca gcttacgaat ttggccgcta agcgtcggct
     7921 ggctaacgtg gcaggaatct gccgcacgcc gaaaatggcg gtgttcagcc aatgccacca
     7981 ggtactcaag atcacgaata ttcattatcc atcctccatc gccacgatag ttcatggcga
     8041 taggtagaat agcaatgaac gactatccct atcaagcatt ctgactgata attgctcaca
     8101 gaaacggagc ggcacctctt ttaacccttg aagtcactgc ccgtttcgag agtttctcaa
     8161 ctcgaataac taaagccaac gtgaactttt gcggatctcc aggatccgct tttttttgcc
     8221 ataaaaaagc ccggcgataa gccaggctca aatttgtaca tataaatgtt cttaccccaa
     8281 ccgcgcctgc gcaaaagcaa tcgcttgggc cacctgctgc ggtgagacac cgccttttgc
     8341 cgcacgcttg tcgaggcacg attgtagcga cagaatcgga tagacatctt cgccaatcac
     8401 gtggctgaat ttctgcaact cgtcgagcgg cagatcttcc agcggtttgc cctgacgaat
     8461 ggcttccacc accgcttcac ccacgatatg gtgcgcctcg cggaaaggta cgcctttcgc
     8521 caccaggtaa tccgccagtt cggtggcgtt ggcgtaaccc tgctgagccg cttcctggca
     8581 acgtggacgt ttcacctgaa tgccgtccag caccagcgcc gccatatgca ggcagtccag
     8641 ccaggtatcg agcgcgtcga acagaccttc tttgtcttcc tgcatatctt tgttgtaagc
     8701 cagcggcaaa cctttcagcg tcatcatcat gccggttaac gcaccctgca cccgaccgca
     8761 tttaccgcga atcagctcca gcgcatccgg gtttttcttc tgcggcatta atgatgaacc
     8821 ggaagtcacg cggtcagaaa gctccacaaa ccccgcttcg ccggtgttaa agaaaatcag
     8881 atcttcagca aaacgcgaca gatgcaccat gccgatagcg gcagccgaca gcagttccaa
     8941 cacatggtca cggtcagaaa cgctgtccag actgttacgg gtcgccgaag caaagcccag
     9001 ccagcctgct aactgttcac ggtcgatttc ataggccgtt cccgccagcg cgccacagcc
     9061 taatgggctg acatccagac gcttaagcgc atcctgcaaa cggctttcat cacgcgccag
     9121 catctcaaca taggccaggc accagtgcgc gaacgtcacc ggctgggcgc gttgcaggtg
     9181 agtgtaacct ggcattaccg cgtcctgatt gttttgtgcg gtttccacca gcgccgattg
     9241 cagctgccgg ttagccgtca gtaactcgct aacggtatct ttgcaccaca gtttcaggtc
     9301 agtcgctacc tgatcattac ggctacgccc ggtatgcagc tttttgccta actggcccac
     9361 tttgtcgatc agtttgcctt ccacccagct atggatatct tcggcgtcgc tttcaaggat
     9421 ttgttgtggc ctggcgcgaa catcttccag caacacgttc agcgcctctt ccagttgcgc
     9481 ctgctcttct gcggttaaca cgccgaccgt tactagggct ttggaccagg ccacagagcc
     9541 aacaatatcc tgctccgcca gacggtaatc aaagcgcagt gagtcgttga attgtttgaa
     9601 ccgttgatct gctgcctggg taaaacgccc gccccaaagt gccataactc tgtttcctta
     9661 ttttgaaatt caatgccgga aagctgcgcc tccggctaac aaaacttaag ctaaaatccg
     9721 cgtacccatc ggcataccgt taaacagtgc cggaagctgc tccgcatgac gccaggaggc
     9781 gatatctacc ggacggccca gcgtgcgggc cgcatccagc gccgcgttca ctttcactat
     9841 catgccgtca gtaataatgc cctgctcaat cagttgttct gctttcgcgg cggtcatttc
     9901 ggcaatgcgt tgccctttgc cgtcgagaat gccgctgacg tcggagagca aaatcagatc
     9961 cgcgcccagc gttgccgcca gcgccgttgc cgcctggtcg gcattgacgt tcatcagttg
    10021 cccttcgtct gttacgccaa tggagctgac caccggcaga taaccgttct ccagcaagga
    10081 gttgataagc ttaggcgaac ctggctgcgc cagtccaaca tgacctaact cttcatcaag
    10141 ctgggtcact ttgacgctgt cgccatcacc gagaaacaaa cctacggccg caatctgatg
    10201 tttcttcgcc catgccaaca gggttttatt tgccgttccc gccagtgctc cggtgataat
    10261 gtctatctga tcagcaggcg tcacccgcag gccgtttttc tttttcaccg gcagattcag
    10321 ccctttcatc agctcatcca ccacgcaacc gccgccgtgc acaatcacca gcggacgctg
    10381 atgtgactca cgataattca ccagtgcgct aaacagacgt tccagcgcct cttcactatc
    10441 cagcagtacg ccgcccagtt tgataattaa tggattcatc attgcaccct taaataagag
    10501 actgcgtttc cgcatagccg aaacgaatat tggcgcactg taccgcttgt gccgccgcgc
    10561 ctttcagtaa gttgtcttcg gtcgccacaa taatcagatg ctcgccctga acggcaaacc
    10621 cgatatcgca aaatggcagc ccaacgacat ttttcagcgc cggaacgcct ttgtcataca
    10681 gccgcaccag cggtttatgg gcatacgcct gctgtaacac ttgcgcgact tgcgcctggg
    10741 tcacacccga tttcaggcgg caggtaatgg tttcgagaat gccgcgcggg aaattgccca
    10801 gatgtggggt gaagataacg tcagcaccga ggtgtgtggc gatctctggt tgatggcgat
    10861 gagtaaagac gccatacggt tgcaggctaa cttcacaaaa actatttgaa atcgctgcct
    10921 tacgtcctgc accgctcacg ccgctggtgg cgttgatcgc cggccactga ttgaggtcaa
    10981 gaagatcggc atcaatcaac ggtttcagcg ccagctgtgc cgccgtcgga taacagcctg
    11041 gcaccgcaat caaattcgct tcttttaatt tattaccgca ccactccgcc agaccgtagg
    11101 ctgcctgttc cagctgttcc gggtattgat gggtaaagcc gtaatatttt tcatagaagg
    11161 tggcgtcgtt aacacgaaac gcgccggaaa ggtcgaacac cacgcagccc gcttcaagaa
    11221 actgcggcgc taaatcgtgg ctaacttcat gggcggtggc gagaaacact acgtccaccc
    11281 ctgggctaaa ctcgctgata tccgacatcg gctgcaacgg cagctcaacg atgcctttta
    11341 gctgcggatg caaatcggag attaactttc ccgcatcatt gctttgcgct gaaacagtca
    11401 aagcggttat gttcatatgc ggatggcgat ttacataggt cactagctct gcgccagcgt
    11461 agccgctggc acccacaatc agcgtattca acatcggggc tattcacctt cttatgtctg
    11521 gttgccaggt taaacgtaaa acattcacct tacggctggt gggttttatt acgctcaacg
    11581 ttagtgtatt tttattcata aatactgcat gaatattgat actatcatga ccagaggtgt
    11641 gtcaacaatg aaaaacaaat taccgccatt tatcgagatt taccgcgctc tgattgccac
    11701 accttcaata agcgctacgg aagaggcact cgatcaaagc aatgcagatt taatcactct
    11761 gctggcggac tggtttaaag atttgggctt caatgtggaa gtgcagcctg ttccaggaac
    11821 tcgcaacaaa ttcaatatgc tggcaagtat cggacagggg gctggcggct tgttgctggc
    11881 ggggcatacc gatacggtgc catttgatga cggtcgctgg acgcgcgatc cgtttacact
    11941 gacggagcat gacggcaagc tttacggctt aggcaccgcc gacatgaaag gcttttttgc
    12001 gtttatcctt gatgcgctac gcgatgtcga cgtcacgaaa ctgaaaaaac cgctctacat
    12061 tctggcgact gctgatgaag aaaccagtat ggccggagcg cgttattttg ccgaaactac
    12121 cgccctgcgc ccggattgcg ccatcattgg cgaaccgacg tcactacaac cggtacgcgc
    12181 acataaaggt catatctcta acgccatccg tattcagggc cagtcggggc actccagcga
    12241 tccagcacgc ggagttaacg ctatcgaact aatgcacgac gccatcgggc atattttgca
    12301 attgcgcgat aacctgaaag aacgttatca ctacgaagca tttaccgtgc cataccctac
    12361 gctcaacctc gggcatattc acggtggcga cgcttctaac cgtatttgcg cttgctgtga
    12421 gttgcatatg gatattcgtc cgctgcctgg catgacattc aatgaactta atggtttgct
    12481 caacgatgca ttggctccgg tgagcgaacg ctggccgggt cgtctgacgg tcgacgagct
    12541 gcatccgccg atccctggct atgaatgccc tccgaatcat caactggttg aagtggttga
    12601 gaaattgctt ggagcaaaaa ccgaagtggt gaattactgt accgaagcgc cgtttattca
    12661 aacgttatgc ccgacgctgg tgctcggtcc gggttccatc aatcaagctc atcagcctga
    12721 tgaatatctg gagacgcggt ttattaaacc cacccgtgag ttgattatcc aggtaattca
    12781 ccatttttgc tggcattaaa acgtaggccg gataaggcgc tcgcgccgca tccggcaccg
    12841 ttgccaaact ccggtgccgc aataatgtcg gatgcgatgc ttgcgcatct tatccgacct
    12901 acacctttgg tgttatgtat ggcgattttt taacatttcc ataagttacg cttatttaaa
    12961 gcgtcgtgaa tttaatggcg taaattcctg ctatttattc gtttgctgaa gcgatttcgc
    13021 agcatttgac gtcaccgctt ttacgtggct ttataaaaga cgacgaaaag caaagcccga
    13081 gcatattcgc gccaatgcga cgtgaaggat acagggctat caaacgataa gatggggtgt
    13141 ctggggtaat atgaacgaac aatattccgc attgcgtagt aatgtcagta tgctcggcaa
    13201 agtgctggga gaaaccatca aggatgcgtt gggagaacac attcttgaac gcgtagaaac
    13261 tatccgtaag ttgtccaaat cttcacgcgc tggcaatgat gctaaccgcc aggagttact
    13321 caccacctta caaaatttgt cgaacgacga gctgctgccc gttgcgcgtg cgtttagtca
    13381 gttcctgaac ctagccaaca ccgccgagca ataccacagc atttcgccga aaggcgaagc
    13441 tgccagcaac ccggaagtga tcgcccgcac cctgcgtaaa ctgaaaaacc agccggaact
    13501 gagcgaagac accatcaaaa aagcagtgga atcgctgtcg ctggaactgg tcctcacggc
    13561 tcaccctacc gaaattaccc gtcgtacact gatccacaaa atggtggaag tgaacgcctg
    13621 cttaaaacag ctcgataaca aagatatcgc tgactacgaa cacaaccagc tgatgcgtcg
    13681 cctgcgccag ttaatcgccc agtcatggca taccgatgaa atccgtaagc tgcgtccaag
    13741 cccggtagat gaagccaaat ggggctttgc cgtagtggaa aacagcctgt ggcaaggcgt
    13801 accaaattac ctgcgcgaac tgaacgaaca actggaagag aacctcggct acaaactgcc
    13861 cgtcgaattt gttccggtcc gttttacttc gtggatgggc ggcgaccgcg acggcaaccc
    13921 gaacgtcact gccgatatca cccgccacgt cctgctactc agccgctgga aagccaccga
    13981 tttgttcctg aaagatattc aggtgctggt ttctgaactg tcgatggttg aagcgacccc
    14041 tgaactgctg gcgctggttg gcgaagaagg tgccgcagaa ccgtatcgct atctgatgaa
    14101 aaacctgcgt tctcgcctga tggcgacaca ggcatggctg gaagcgcgcc tgaaaggcga
    14161 agaactgcca aaaccagaag gcctgctgac acaaaacgaa gaactgtggg aaccgctcta
    14221 cgcttgctac cagtcacttc aggcgtgtgg catgggtatt atcgccaacg gcgatctgct
    14281 cgacaccctg cgccgcgtga aatgtttcgg cgtaccgctg gtccgtattg atatccgtca
    14341 ggagagcacc cgccataccg aagcgctggg cgagctgacc cgctacctcg gtatcggcga
    14401 ctacgaaagc tggtcagagg ccgacaaaca ggcgttcctg atccgcgaac tgaactccaa
    14461 acgtccgctt ctgccgcgca actggcaacc aagcgccgaa acgcgcgaag tgctcgatac
    14521 ctgccaggtg attgccgaag cgccgcaagg ctccattgcc gcctacgtga tctcgatggc
    14581 gaaaacgccg tccgacgtac tggctgtcca cctgctgctg aaagaagcgg gtatcgggtt
    14641 tgcgatgccg gttgctccgc tgtttgaaac cctcgatgac ctgaacaacg ccaacgatgt
    14701 catgacccag ctgctcaata tcgactggta tcgcggcctg attcagggca aacagatggt
    14761 gatgattggc tattccgact cagcaaaaga tgcgggcgtg atggcagcgt cctgggcgca
    14821 atatcaggca caggatgcat taatcaaaac ctgcgaaaaa gcgggtattg agctgacgtt
    14881 gttccacggt cgcggcggtt ccattggtcg cggcggcgca cctgcccatg cggcactgct
    14941 gtcacaaccg ccaggaagcc tgaaaggcgg cctgcgcgta accgaacagg gcgagatgat
    15001 ccgctttaaa tatggtctgc cagaaatcac cgtcagcagc ctgtcgcttt ataccggggc
    15061 gattctggaa gccaacctgc tgccaccgcc ggagccgaaa gagagctggc gtcgcattat
    15121 ggatgaactg tcagtcatct cctgcgatgt ctaccgcggc tacgtacgtg aaaacaaaga
    15181 ttttgtgcct tacttccgct ccgctacgcc ggaacaagaa ctgggcaaac tgccgttggg
    15241 ttcacgtccg gcgaaacgtc gcccaaccgg cggcgtcgag tcactacgcg ccattccgtg
    15301 gatcttcgcc tggacgcaaa accgtctgat gctccccgcc tggctgggtg caggtacggc
    15361 gctgcaaaaa gtggtcgaag acggcaaaca gagcgagctg gaggctatgt gccgcgattg
    15421 gccattcttc tcgacgcgtc tcggcatgct ggagatggtc ttcgccaaag cagacctgtg
    15481 gctggcggaa tactatgatc aacgcctggt agacaaagca ctgtggccgt taggtaaaga
    15541 gttacgcaat ctgcaagaag aagacatcaa agtggtgctg gcgattgcca acgattccca
    15601 tctgatggcc gatctgccgt ggattgcaga gtctattcag ctacggaata tttacaccga
    15661 cccgctgaac gtattgcagg ccgagttgct gcaccgctcc cgccaggcag aaaaagaagg
    15721 ccaggaaccg gatcctcgcg tcgaacaagc gttaatggtc actattgccg ggattgcggc
    15781 aggtatgcgt aataccggct aatcttcctc ttctgcaaac cctcgtgctt ttgcgcgagg
    15841 gttttctgaa atacttctgt tctaacaccc tcgttttcaa tatatttctg tctgcatttt
    15901 attcaaattc tgaatatacc ttcagatatc cttaaggaat tgtcgttaca ttcggcgata
    15961 tttttttcaa gactggttct tactatgcat tccacagaag tccaggctaa accccttttt
    16021 agctggaaag ccctgggttg ggcactgctc tacttttggt ttttctctac tctgctacag
    16081 gccattattt acatcagtgg ttatagtggc accaacggca ttcgcgactc gctgttattc
    16141 agctcgctgt ggttgatccc ggtattcctc tttccgaagc ggattaaaat tattgccgca
    16201 gtaatcggcg tggtgctatg ggcggcctct ctggcggcgc tatgctacta cgtcatctac
    16261 gggcaggagt tctcgcagag cgttctgttt gtgatgttcg aaaccaacac caacgaagcc
    16321 agcgagtatt taagccagta tttcagcctg aaaattgtgc ttatcgcgct ggcctatacg
    16381 gcggtggcag ttctgctgtg gacacgcctg cgcccggtct atattccaaa gccgtggcgt
    16441 tatgttgtct cttttgccct gctttatggc ttgattctgc atccgatcgc catgaatacg
    16501 tttatcaaaa acaagccgtt tgagaaaacg ttggataacc tggcctcgcg tatggagcct
    16561 gccgcaccgt ggcaattcct gaccggctat tatcagtatc gtcagcaact aaactcgcta
    16621 acaaagttac tgaatgaaaa taatgccttg ccgccactgg ctaatttcaa agatgaatcg
    16681 ggtaacgaac cgcgcacttt agtgctggtg attggcgagt cgacccagcg cggacgcatg
    16741 agtctgtacg gttatccgcg tgaaaccacg ccggagctgg atgcgctgca taaaaccgat
    16801 ccgaatctga ccgtgtttaa taacgtagtt acgtctcgtc cgtacaccat tgaaatcctg
    16861 caacaggcgc tgacctttgc caatgaaaag aacccggatc tgtatctgac gcagccgtcg
    16921 ctgatgaaca tgatgaaaca ggcgggttat aaaaccttct ggatcaccaa ccagcagacg
    16981 atgaccgccc gcaataccat gctgacggta ttttcgcgcc agaccgacaa gcagtactac
    17041 atgaaccagc aacgtacgca gagtgcgcgt gaatacgaca ccaacgtgct gaagccgttc
    17101 caggatgtgc tgaatgaccc tgcgccgaag aaactgatca tcgttcatct gctgggtacg
    17161 catatcaaat acaaataccg ctacccggaa aatcagggca agtttgatgg caataccgat
    17221 catgttccgc caggattaag cgcagaagag ctggaatcat ataacgatta tgacaacgct
    17281 aacttgtata acgatcatgt ggttgccagc ctgattaaag actttaaagc ggcagacccg
    17341 aacggattcc ttgtttactt ctctgaccac ggtgaagagg tttacgacac gccgccgcac
    17401 aaaactcagg ggcgtaacga agacaacccg acgcgccaca tgtacaccat tccgttcctg
    17461 ctgtggacgt cggaaaaatg gcaagcgact catccccgtg atttctcaca ggatgtcgat
    17521 cgtaaataca gcctggcgga actgatccac acctggtcag atttggcggg cttatcttac
    17581 gacggttacg atccaacccg ttcagtggtg aatccgcagt tcaaagaaac tacccgctgg
    17641 attggtaacc cgtacaagaa aaacgcgctg atcgattacg acactctgcc gtatggcgac
    17701 caggtaggta atcagtaatt atcagccagg cgctatttgc cggatgcgac gcttgacgcg
    17761 tcttatccgg cctacagatc gcggcggtag gctggataag gcgtttacgc cacatccggc
    17821 aatacaactg ccgcaatgtt tacatcgaac tcccctcagg ccacactttt caggtggcct
    17881 tttttaataa tgccagttac tgttttcccg tctacatacc taagggaata acatgtatca
    17941 cgacatcagc tatctgctct cccgcctgat caacggcccg ctgtccctgc gccagattta
    18001 ctttgccagc agtaacggcc cggtgcccga tcttgcgtat caggtcgatt ttccacggct
    18061 ggaaattgtg ctggaaggtg agtttgttga taccggcgct ggagcaacgt tagttcccgg
    18121 cgatgtgctg tacgttgccg ctggtggctg gaatttccca caatggaaaa cacccgctac
    18181 cacctttagc gtgctgtttg gcaaatagca actcggcttc agcgtcgtgc aatgggatgg
    18241 caaacaatat caaaatctgg cgaagcaaca cgtcgcccga cgcggcccac gtataggttc
    18301 ttttctgcta caaacgctca atgaaatgca aatgcagccg caggagcagc aaacggcaag
    18361 gcttatcgta gccagcctgc ttagccactg ccgcgatttg ctcggcagcc aaatccagac
    18421 cgcctcacgc agccaggcac tatttgaagc tattcgcgat tatatcgacg aacgctatgc
    18481 ctccgcgctt acccgcgaat ctgtcgcaca ggcattctat atttcaccaa actatctctc
    18541 gcacctgttt caaaaaacgg gggccattgg ttttaacgaa tacctgaatc acacgcgact
    18601 ggagcacgct aagacgttat tgaaaggcta tgacctgaag gtaaaagaag tggcgcacgc
    18661 ctgcggcttt gtcgacagca actacttctg ccgtctgttt cgtaaaaaca ccgaacgctc
    18721 gccgtcggaa tatcgccggc agtaccacag ccaactgaca gaaaaaccga ctactccaga
    18781 ataagatggg tttgctgcgg cgcagaaagc actttgcgca ccgcgctcat tacccgctgc
    18841 ggctcacgca ggaatgcgta gatgctgcat tgcacatagc ggcaatgttc aaatcgctcg
    18901 gcaccggcaa gctcgatatc cgtaatcaac agagcaacat ccgcccgacg gatatcctcg
    18961 tccgctaaac gattctccgt tcccagcgcg ccctgagttt caatgctgac gccccacttc
    19021 tctaactggc acaacttttc cagccgttcc gccgccatat aagtatgcgc cacgccgctt
    19081 acgcaggcgg ttactgccac caggtatgcc attttaacct cccacggtaa cctgaaatcc
    19141 ggcccgttct gccatttcgc gcatcgttgc cacatcggct gatgacggcg cagcaacatc
    19201 cttcatcgac catgttttcc ccagcaggcg gtatttcggc tcgccgtact gatgaaacgg
    19261 caacagatgg atctgcctga tattcagcgg gatcagcacg tccagcgcct gctgcatatt
    19321 ctcccggctg agtgtgaaac cggggatcag cggcaaacgc gggatcacgt tgacaccctc
    19381 actcaccagc aaacgcaggt tctccagtac gcgtggcagg ttcatcttca ccacatcccg
    19441 cgcctgagtc gcgtccataa tttttaaatc gaacaacact tcatcgcaca atttcgccag
    19501 cggtaacagc ttgctgactg gtgcgtctcc ggcagtttca atggcacatg agacacccca
    19561 cagccgcagt cgctgtaaaa aacgggtagc aaactccacc tgcattaaca cttcgccgcc
    19621 agaaagcgtg acgccgccgc cggacgtgcg aaaaaaaatg tcatctttca tcacttcccg
    19681 ttccagagcg tcaaggctga tatcgcgacc aatccgttca aacgccccgg aggggcattc
    19741 atccgcatca cgcaaacatt tcgcacagtg cagacatttc gcctctctgc gtaccgtctg
    19801 gattttgccg gagatcgact ccggattagc acaccacggg caaagatgcg gacagccttt
    19861 aaaaaagacc accgtacgaa tgccctcgcc gtcattcagt gaataacgct gaatgttgaa
    19921 aatgcgcgcc acatcattgc ggcgcgtttc cacaacgtta cagctgatgc gctgtccggc
    19981 ggatgatgtc atcctggatc tccttcgaca gttcgacaaa gaaggcgctg tatccggcaa
    20041 cgcgcaccac cagcccggca taatcttgtg ggcgctgttg cgcttcccac aacgtgtcgg
    20101 cgttcaccac gttaaactga atatgctgca acttaagctg ggtaaacgcc cgtaagaagt
    20161 cggccagttt gcgtaatccc gcttcacctt ccagggtcgc cggagtgaat ttcacgttca
    20221 gcaacgtacc gttagacagc agcgtattat cgagcttact gactgacttc agtaccgctg
    20281 ttggcccttg ttcgtcctgg cccagcatag gtgacaagcc gccgtctgcc agctgctctc
    20341 cggcaaaacg accgtctggc gtcgcgccaa ccaccgatcc caacgggacg tgagcagaaa
    20401 cggtatacga tcccggcgtg aagtaaccac cgcgcgggtt ctggtatttt tccacttctt
    20461 tgcagtagtg gcgcaacagt tcggcgctaa tgttatccac ctcgtcgata tcgttaccat
    20521 atttctcaaa gcggttaatt aagcgagcgc ggactttttc gccttctggc gttgcaaagt
    20581 tggcttttaa taccgacagc aattcgtcaa aacttaaacg ctgttgctca aaaaccatcc
    20641 ctttcaacgc atggagagaa tcgctcaggt tggcgatacc gatcccctgt acgccggaga
    20701 agttataacg cgcgccgcca tcggtaatat cgcgaccttt ttccagacaa tcgctgataa
    20761 aagacgagag cagcggtaca ggtgcccagt cgcgatggcc gatatcacaa atattgctgc
    20821 cctcaaccat cagggtgatg tagtggctga tcttggcgcg gatctgctcc agtaaacctt
    20881 cataagtcag cgcagcattg ccttcatttt catgcaggca gatttccatc actttcagca
    20941 gattaaacat cgcgatgtca tgcaagccgt aggttctgcc gggaatagat aattccacac
    21001 agcccactac ggaatagtcg cgcgcatctt ccagcgaaac gccacggttg aggaacgctg
    21061 gtaccaccac ttcatcgtta aagatttgcg gaataccggt gccgaggcga atggtttcgg
    21121 cggttttcat caggaatggc gtgtcgatca aggcgttagt gcgcacgccg aggttcggtt
    21181 gcggtaattg cacgctttga taggcgtcaa ggcaaaggaa cgaaagcacg ttcaccgcgc
    21241 tacgtccgtt ctcggttaac ccgccgagca gtgcggtata gccggtcggg aaacctgcga
    21301 aataacgcgc gctgctggtg gagcgcaaca gcacgatgtc gttgcatttc acccataaag
    21361 attcgagcag ttctttcagg aacgccggat cttcgccctg ggttaaagat gcctgataga
    21421 acggcaacat atactggtcg aagcgcccta aagacagcga actggcgttg gattcgtatt
    21481 gcagaatgat gttcatgtac cagaataact ggcacgcctg ccagaacgtc tgcggcttat
    21541 gttcggcgtt atggcgagag atctccgcaa tagtcagcag ttcttcgcga cgctgggcat
    21601 ctgtgcagtt tgccgccatc gtttccgcca gtacggcgta acgcaaaatg tgtttctgcg
    21661 aggcttccag cagtaacagc gctgcctgat aaaagtgatt ctccggctgt tgctgacaat
    21721 gttgctgcat ctgtgccacc aactccccca gcccgtgatt caacaggcgt gggtaatcaa
    21781 taataatgtg cccctggcct ttatccgtct ggttaatgct gaaaatctgc gtgctggtcg
    21841 cggcttttac ttcatccgtc atctgcccgt tgatgaaatc tttcatcgaa cgtttttccc
    21901 agtacgggaa caactcttca cgatagatac gtttatcttc ttcgctgata gcaaagcggt
    21961 cctgcggacg cgtcgggaat tgatccagct ctttcagcag ccagtaaggg tccatttccg
    22021 gcgacataat cccggcgcgc ggttttacgg tgcggttacc ggcaatcagt tcttcatcac
    22081 gaatcgaaat ttcaacatgt tcaaggatat acgctgttgc tttcgcccgg cgcaatatca
    22141 ccggttcgcc ttcggtttgc cgatggctgg cggtataaag cagcgcccgc tccagcgaga
    22201 tttcacgggt attggcaaac agtgcagttt tgaggcgaga gatacgattc gtcatgagga
    22261 actcctgtgg gaaagcgaac ccgcccttgc gagcgggaga agaacttaag cggtttgcgc
    22321 caggtgagct tcaattttgc tcataatggc gtcagcacgt tttactgcat cgctgatgtt
    22381 gacgcgcacg atggtcttgc cagcaaaacg ctcttcaaac ttgatgccga tatctttggt
    22441 cagaatcacc atatcagcgc tcgccacatc ttccgcagtc agttcatttt ccagaccaat
    22501 tgacccctgg gtttctactt tcacttccca gcctttcgct ttcgcggcac tttccagcgc
    22561 ctctgctgcc atataggtat gggcaacacc tgaaggacat gcggttactg caataatttt
    22621 cgtcatggct cgttcctcaa ttaattaatt tcaaaatcca aatccaggtc gtcttctttt
    22681 tcatcagtcg aagacccatt tttacgcgcc agacttttca gcacgttcac acaaacagcc
    22741 gtcaccactg ctccgacagc cactgctgcg atataaccca gcttgccttc aaccaccggc
    22801 agcacaatca gaccacccca gcctgcatag cactgcgcac cgaccagcgc cgcagttact
    22861 gcaccacaaa ctgaaccgac catgatggaa ggaatgacac gcagcggatc ggcagcggcg
    22921 aaaggaatcg ccccttcagt aacgccaaca cagcccatca ccagtgccgc tttgccggtt
    22981 tcgcgctctt ctgcggagaa atttttacga ccaatcagcg tcgccagccc catccccagc
    23041 ggcgggatac aaatacccac ggcagcgatg accaccacgg tataaacacc ctgagcaacg
    23101 caaatcagca tgaaggcata ggccactttg ttaaccggac cgcccatatc gaacgccagc
    23161 atcagaccca tgatcaccgc cagcataaca atgctgccct gctgcatccc ttgaagccac
    23221 tgagtcaggc tgttggtcaa cgcccctaca ggctcgccca agccccacat catgatgcct
    23281 gcggtaatca gtgtgccgac gataggaata atgaagatag gcatcaccga gcgcagaact
    23341 ttatgcaccg gaattttctt caggtaatgc accacgatgc cgccgataat cccggcgatc
    23401 agtgcaccaa agaagcccgc accaaagctg ttaccaacct aggcaccgat agcgcacgga
    23461 gccagcgcag aacgctctgc aatggagtaa ccaatgtaag cggcgaggaa aggcaccatc
    23521 agcgtcaaac ctgcaacgcc gatatcaaac agttttttca aattcggatc ggctacggca
    23581 tccggcactg cgcctttgcc atacaacatg acggaaaccg ccagcaaaat accgcccgat
    23641 accacgaagg gaatcatgtg tgaaacgccc gtcattaaat gctgacgggt atttttcagg
    23701 atctgcacca actcattcat aagctgctcc cgggcttgcg aaagcccatg tccatatttt
    23761 tgatggagga aacaataggc aatcgcaggc ggagcaaaca gtggataaaa aggccattta
    23821 ctggactttt gtaatatcag tacaaaaatg cgatccgcct cataacttgc gataaaccgg
    23881 aagcatgccg caaaacggcg tcttgtgaga cgcgtcgcaa attgacggtt acattacatt
    23941 tgtccagctt ttggcagatt tgtcacatgg caggccgttg ccgtgcgctc ttatcctgta
    24001 aacagaaaac cgtaccggga gagaggcaat ggccctgatt gtggaattta tttgtgagct
    24061 acctaacggc gtacatgcgc gtccggcaag ccacgttgaa acgctgtgta atactttttc
    24121 atcacaaatt gagtggcata acctgcgcac tgaccgcaag ggcaacgcca aaagcgccct
    24181 tgcgctgatt ggcaccgata cgctggcggg cgataactgc cagttactga tttccggggc
    24241 cgacgaacag gaagcgcacc agcgtttaag ccaatggctg cgcgatgaat tcccccactg
    24301 cgatgcgccg ctggcggaag ttaaatctga cgaactggaa ccactgccgg tttcactgac
    24361 caatctgaat ccgcaaatta tccgcgcccg caccgtgtgc agcggtagtg caggcggcat
    24421 tctgacgccg atctcttctt tagatctcaa tgcgctgagt aatcttcccg cagccaaaga
    24481 cgttgacgcc gagcaatccg cactggaaaa tggcctgacg ctggtactga aaaacattga
    24541 gtttcgtctg ctggatagcg acggtgctac cagcgcgata ctggaagctc accgatccct
    24601 ggctggcgat acatctttac gtcagcactt actggcaggc gtcagcgagg gattaagctg
    24661 tgccgaagcg attgtcgcca gtgcgaatca cttttgcgaa gagttcgccc gttccagcag
    24721 cagctacctg caagaacgtg ccctggacgt acgcgacgtc tgcttccagt tactccagca
    24781 aatctacggt gagcaacgct tcccggcacc gggcaaactg acgcagcccg ccatttgtat
    24841 ggctgatgaa ctgactccca gccagttcct cgaactggat aaaaatcacc tcaaaggtct
    24901 gttactgaaa agtggcggca ccacctcaca taccgtaatt cttgcccgtt cgttcaacat
    24961 tccgacactg gttggtgtag atattgatgc ccttactccg tggcagcatc aaacgattta
    25021 tatcgacggc aacgccgggg cgattgtggt tgagccaggg gaagccgtgg cccgttatta
    25081 tcagcaagaa gcccgcgtac aggacgccct tcgtgagcaa cagcgtgtct ggctgaccca
    25141 acaagcccgt accgctgacg gtatccgcat tgaaattgcc gctaacatcg ctcactccgt
    25201 ggaagcgcag gccgcattcg gcaatggtgc ggaaggcgtt ggtttgttcc gcactgaaat
    25261 gctctatatg gatcgcacca gtgcaccggg cgaaagcgag ctgtacaaca ttttttgtca
    25321 ggcgctggag tctgccaacg gacgcagcat tattgtgcgc actatggaca ttggcggcga
    25381 caaacccgtt gattatctga acattccggc agaagctaac ccgttcctcg gttatcgcgc
    25441 tgtgcgtatt tatgaagaat acgcctcgct gttcaccaca caactacagt cgatcctgcg
    25501 cgcctccgct cacggcagcc tgaaaatcat gatcccgatg atctcctcaa tggaagagat
    25561 cttatgggtg aaagaaaaac tggcggaagc caaacagcaa ctgcgtaacg aacacattcc
    25621 gtttgatgag aagatccagc ttggcattat gctggaagta ccgtcggtga tgttcatcat
    25681 cgatcaatgc tgcgaagaga ttgatttctt taatattggt agtaatgacc tgacgcaata
    25741 tctgctggca gtggatcgcg ataacgctaa ggttactcgt cactacaaca gcctgaatcc
    25801 ggcattcttg cgggcgctcg attacgccgt gcaggcggtg catcgccagg gcaaatggat
    25861 tggtctgtgc ggtgagctgg gagcgaaagg ttccgtgctg ccgttgctgg tcggcttagg
    25921 gctggatgaa ctcagcatga gcgcaccatc aattccggcg gcgaaagcgc ggatggcgca
    25981 acttgatagc cttgagtgcc gcaagttgct caaccaggca atggcctgcc gtacttcgct
    26041 ggaagtggaa cacctgctgg cgcaattccg catgacccaa caggacgcac cgctggtcac
    26101 cgccgagtgc atcacgctgg aaagtgactg gcgcagcaaa gaagaagtgc tcaaaggcat
    26161 gaccgataac ctgctgctgg cgggccgctg ccgctatccg cgtaaactgg aagccgactt
    26221 atgggcgcgc gaggccgttt tctctaccgg tctgggcttt agttttgcca ttccacacag
    26281 caaatcagaa cacattgagc aatccaccat cagcgtggcg cgtctgcaag cgccggtgcg
    26341 ctggggcgat gatgaagcgc aattcatcat tatgttaacc ctgaacaaac acgctgcggg
    26401 cgatcagcac atgcgcattt tctcgcgcct cgctcgccgc atcatgcacg aagaattccg
    26461 taacgcgctg gttaacgccg cctctgccga cgctatcgcc agcctgctgc aacatgaact
    26521 ggaactgtaa aaggaaacat catggaactg tatctggaca ccgctaacgt cacagaagtc
    26581 gaacgtctgg cacgcatatt ccccattgcc ggggtgacaa ctaacccgag cattatcgct
    26641 gccagcaagg agtccatctg ggaaattctg ccgcgtctgc aaaaagcgat tggtgatgag
    26701 ggcattctgt ttgctcagac tatgagtcgt gacgcgcagg gtatggtgga agaagcgaag
    26761 cgcctgcgcg acgccattcc gggcattgtg gtgaaaatcc cggtgacttc cgaaggtctg
    26821 gccgccatta agatgctgaa aaaagagggt attactacgc ttggcaccgc agtgtacagt
    26881 gctgcacaag ggttactggc cgcgctggca ggggcaaaat acgttgctcc gtatgttaac
    26941 cgcgtagatg cccagggcgg ggacggcatt cgtacggttc aggagctgca agcgctgtta
    27001 gaaatgcacg caccagaaag catggtgctg gcggccagct ttaaaacgcc gcgtcaggcg
    27061 ctggactgtt tactggcagg atgtgaatcc atcaccctgc ccttagatgt agcgcaacaa
    27121 atgctcaaca cccctgcggt agagtcagct atagagaagt tcgaacacga ctggaatgcc
    27181 gcatttggca ctactcatct ctaaaggagc aattatggac cgcattattc aatcaccggg
    27241 taaatacatc cagggcgctg atgtgattaa tcgtctgggc gaatacctga agccgctggc
    27301 agaacgctgg ttagtggtgg gtgacaaatt tgttttaggt tttgctcaat ccactgtcga
    27361 gaaaagcttt aaagatgctg gactggtagt agaaattgcg ccgtttggcg gtgaatgttc
    27421 gcaaaatgag atcgatcgtc tgcgtggcat cgcggagact gcgcagtgtg gagcaattct
    27481 cggtatcggt ggcggaaaaa ccctcgatac tgccaaagca ctggcacatt tcatgggtgt
    27541 tccggtagcg atcgcaccga ctatcgcctc taccgatgca ccgtgcagcg cattgtctgt
    27601 tatctacacc gatgagggtg agtttgaccg ctatctactg ttgccaaata acccgaatat
    27661 ggtcattgtc gacaccaaaa tcgtcgctgg cgctcctgca cgtctgttag cggcgggtat
    27721 cggcgatgcg ctggcaacct ggtttgaagc acgcgcctgt tcccgtagcg gcgctaccac
    27781 tatggcgggc ggcaagtgca cccaggcggc gctggcactg gcagaactgt gctacaacac
    27841 tctgctggaa gaaggcgaaa aagcgatgct tgccgccgaa cagcatgtag taacccctgc
    27901 gctggaacgc gtgattgaag cgaacaccta tttaagcggt gttggttttg aaagcggcgg
    27961 actggcggcg gctcatgcgg tgcataacgg cctgaccgct atcccggacg cgcatcacta
    28021 ttatcacggt gaaaaagtgg cattcggtac gctgacgcag ctggtactgg aaaacgcgcc
    28081 ggttgaggaa atcgaaaccg tagctgcact tagccatgcg gtaggtttgc caataactct
    28141 cgctcaactg gatattaaag aagatgtccc ggcgaaaatg cgaattgtgg cagaagcggc
    28201 atgtgcagaa ggtgaaacca tccacaacat gcctggcggc gcgacgccag atcaggtata
    28261 cgccactctg ctggtagccg accagtacgg tcagcgtttc ctgcaagagt gggaataacc
    28321 tactccaaac tcccggcttg tccgggagtt tgaacgcaaa attgcctgat gcgctacgct
    28381 tatcaggcct acgcaatctc tgcaatatat tgaatttgcg tgctttttag gccagataag
    28441 gcgttcacgc cgcatccggc actctgtgcc agtaatctga aactcctacg ttgttcagga
    28501 gttttttatc cgcttctgga cattttctct acagaacaat cgttagcccg gaaggtcgaa
    28561 tctgtgactc ttattttcac ggacgaacca gatgaaagct tcactggcgc tgctcagcct
    28621 gctaacggca tttaccagcc actccttaaa atctcccgcc gttccaccaa ccgtggtaca
    28681 aatccaggcc aataccaacc ttgccatcgc agacggtgcc agacagcaaa tcggcaacac
    28741 gctattttac gatccggcgt atgtgcggct tacctatcct ggcggtgatg tcccgcaaga
    28801 acgcggtgta tgttccgatg tggtgatccg tgcattgcgc agccagaagg tcgatttgca
    28861 gaaactggtt cacgaagata tggcgaagaa ttttgccgag tacccgcaaa aatggaagtt
    28921 aaagcgcccg gacagcaaca tcgatcaccg tcgggtgcct aatctggaaa cctggtttag
    28981 ccgccacaac aaaacacgcc ccatcagtaa aaatgccggt gactatcaag cgggcgatat
    29041 tgtctcctgg cgattagata acgggctggc gcatattggg gtggtgtcag atggcttcgc
    29101 ccgcgacggt acgccactgg tgatacataa cattggcgca ggcgcgcagg aagaagatgt
    29161 gctgtttagc tggcggatgg tggggcatta tcgttatttt gttaaataag cgatcgcccc
    29221 acatgaagaa aaaattcaga tgctttttac actgacagct tcttttttct tacggctcac
    29281 cagcgccagt gccagcacaa tcagcacaat cagcacaata ccgctacctt caacggcccc
    29341 cggattctca ccgagcagcc accaggaaaa gagtacgccg caaacgggaa cggccagcgt
    29401 gcttaagctg gcaatactgg caggcaagtt tttcaataca aacaaccata agctccacgc
    29461 cagcgccgtc gccagaatcg cactgtaggc cagcgcccag aacacggtgg gctgccagtc
    29521 aatttcacgt tgcggcacca gtaaagcgac cacactcatc accagcgccg catagagcat
    29581 ctgccaggat gttaacgata ataaatccac gcgcggatga cgggtgtata ggcgtttagc
    29641 aacaatcgcg ctcgcccccc aactaacacc ggagaggatt gccagcatgg cacttttcat
    29701 cgaagagaaa tcgagttgcc acggctgcaa caccaaaaat aagccgaaag cggcaatcag
    29761 aatcgcgaaa tattgcccac gtcgcaggcg ttcaccgaga aacaacgcgg cgaaaatcac
    29821 cacccagaac ggcatggtat agctcaggat cgccaccttc cccgcacctc cgctgaccaa
    29881 cgcccactgc gccagaccaa ccatcccgca ggtttgtaac agggcaatgg ctaaggtgta
    29941 tttaaacggc gtcgggtgca ttccgcgacc acgtaataaa aggacgatga ataaaacgag
    30001 agcgccgaaa atgcagcgta aggcggtaaa gtcgaaggca ccgatgtaac tggtgacttg
    30061 cttcatgaaa atccagctat aactccagat aagtgtgagc acaaccaggc cactgattgc
    30121 cagtgggttg ctctttcctg cggcagacat gagagatcca gtgtgtagtt ttcctgtgga
    30181 cactatacgc cggtaaagaa acttcagcga ctgcctgaaa gacagtcact gaagaaggtc
    30241 agattacagc aggtcgaaac ggtcgaggtt catcactttc acccatgccg ctacgaagtc
    30301 tttaacaaac ttctcgtggg catcgctgct ggcgtaaact tccgctaccg cacgcaggac
    30361 agagttagaa ccaaatacca gatccgcacg gctggctgtg tatttcactt cgccggtttc
    30421 gcggtcacgt ccttcgaaca gctctttcga ttcgtcagtc gctttccact cgtaacgcat
    30481 atccagcaag ttcacgaaga agtcattgct caatacgcca acgcggtcag tgaagacgcc
    30541 gtttttgctg ctatcgaagt tggcacccag tacacgcatc ccgcccacca gcgcagtcat
    30601 ttccggcgcg gtcagcgtca gttgctgtgc tttgtcgatc agcagtgact cggtggtgga
    30661 aacgtccaga cgagcgcgat agttacggaa accgtcagca attggctcca gcagctcaaa
    30721 catctcaatg tcagtctgat cctgacgcgc atcaacgcga cccggcgcaa acggtacatg
    30781 aatgctcaaa cctgcggcgc ttgcggcttt ctcaacacca accacaccag ccagcacgat
    30841 gatatccgcc agcgaggctt taccagactc tttctggatt ttctccagaa caggcagagc
    30901 acgaacggct gcggcgttca catcccagtc gcgctgcggc attaatgcca gacgcgcacc
    30961 gttggcacca ccgcgtttgt cgccaccacg gaaggtagaa gcagatgccc aggccaccga
    31021 taccagctca ctaacagaca gaccagaatc cgcaatcgcg aatttcagat cgataatgtc
    31081 ctgctcggtc gggttgtaga tcggctgcgg cagcggatct tgccagatca gatcttcttt
    31141 cggcacttcc ggcccgatgt agcgagattt cggccccata tccctgtgcg tcagtttgaa
    31201 ccaggcacgg gcaaaggctt cgttgaacgc ctgcggatcg ttgaggaaac gacgagagat
    31261 cttctcgaac tcaggatcaa aacgcagcgt caggtcggtc accagcattg tcggtttacg
    31321 tttcttcgac ggatcgaacg gatccgggat aatttccggt gcgtctaccg cgtcgaactg
    31381 gattgctcca gccggactgc gggtctgtac ccactcatat ttgaacaggt tctcgaagaa
    31441 atagttgctc cactgggtcg gcgtctgggt ccagacaact tccagaccag aggtaatggc
    31501 atctgcgcca acgccgctgc cgtaagtgct cgcccagcct aaaccttgtt cttcaatcgg
    31561 tgcagcttct ggatcaggac ctacatttga tgtcggaccg gcaccgtgag ttttacccag
    31621 cgtatgacca cccgcaatca gcgccacggt ttcttcgtcg ttcatgccca tgttgccgaa
    31681 ggtcgcacgg atagctgctg ccgcagaaag cggttcgccg ctgtgatccg ggccttccgg
    31741 gttaacgtaa atcagaccca tctcggttgc acccagcggt gctttcgcca gcgcttccgg
    31801 atgacggtga gtcagccagg ctttttcatc accccagtta acatccagat ccggttccca
    31861 gacgtcttca cgaccggcac caaaaccgaa ggtacggaag ccggagtttt ccagcgccac
    31921 gttacctgcg aggataaaca ggtcggccca ggagattttc tgaccatatt tctgtttgat
    31981 tggccacaac aggcgacgcg ctttatcgag gcttacgtta tccggccagg agttcagcgg
    32041 tgcaaaacgt tgctgaccac gacccgcgcc gccgcgtcca tcgattgaac ggtaagtacc
    32101 tgcgccgtgc caggccatac gaataaacag accggcgtag ctgccccagt cggctggcca
    32161 ccacggctga gattctgtca gcagggcttt cagatctttt ttcaggccgt agtaatctaa
    32221 tttgctgaat tctttgcggt agtcaaagtc ctcacccagc gggttagaac gattagaatg
    32281 ttggtttaac aggtcaacac ggagttgatt tggccaccag tcgcgagtgg ttgtgcccgc
    32341 ccccgcgctc tggtcgtgac cgccctgatg gaacgggcat ttgccagtgg ctgtcgtgtt
    32401 atggatatcg tctgacgtgc tcatcaatgt gctcccctct acagtgttac cgttacgata
    32461 cacagcgtta gagagaagtt ataattgaat taatccacgg atgcgatagt tgagatctta
    32521 catattgttg gttaaagaga tgtaggtcaa attgatcgta attaagcttt tttgattatg
    32581 tccgaattcg gacaaatgct ttataaaaaa gggttttagc ttcatatcct tcaagtaatg
    32641 agggagaaaa caaggctgac aaccttattt tcccgccctc atttcgaggc agcattttgt
    32701 gctctgttta aaatttgtga tcactgtgtg attttcacaa aagccacact atttataaac
    32761 caggtcgaac acccagcgta tggcaaatcg cgtaactcat ttcagcgcgg ttaagcgtat
    32821 agaagtggaa atctttcact ccttcacggc ttaaaatctt caccatatcc atggcaatat
    32881 tcgcgcccac cagtttgcgg gtttcggcat catcatctag gccgtcgaac atttgcgcca
    32941 tccacgccgg aatacgcacg ttggtcatat cggcaaattt cttcgcctgt ttaaagttag
    33001 ataccggcaa aattcccgga ataatttcca catcaatgcc cgccgataca cagcggtcac
    33061 gaaaacgcag gtagctttcg acatcgaaga agaactgagt aatcgcgcgg ttggctccgg
    33121 catcgacttt acgtttcaga ttaagcaaat ccgcctgagc gctttttgct tccgggtgaa
    33181 cttccggata cgccgccacg gagatatcga aatctgccac ttcttttaat agcgtcacca
    33241 ggtcagaagc atacatttct ggcttaccac ttcccggcgg cagatcgcca cgcagcgcca
    33301 cgatatgacg aataccgtta ttccagtagt cgcgtgcaat ggtgcgcaac tcgtcgggcg
    33361 tcgcatcaat gcaagtaaga tgcggtgccg cttccagacc agtgcgatct ttaatgcctt
    33421 taataatgct gtgcgtacgg tcgcgctcgc cggagttcgc gccataggtc accgatacaa
    33481 acttcggttt caggctgcta aggcgatcga tggagttcca cagggtctgc tccatttcac
    33541 tggtacgcgg cgggaaaaac tcgaacgaaa cgttaatctg cccctggact tctgccaggc
    33601 tctgattcag ggcatcccgc tggctggcgt gaaaaaagct cataccttac ctcatcaatc
    33661 gcttgtagtt atatgttgtg ctgtgcacat ctatccgttt agacgtccag atgtaaagat
    33721 gaaggaaaag ccgaagggcg tcaaccgaaa aatgaccaat gatggtgagg aaaaatcagg
    33781 gaagatgaaa aaacttcagg atggtaagaa aaagaaaatc cggtatgcaa agcaaaccgg
    33841 actgcaaata taaactaacc atgtacttat tgcttcttgc cggattcgtc gtaaacgctt
    33901 aatccggcct aatcctatga taattcaata tatttcatta gaaaccataa acccgaaaac
    33961 atgagtaccg ggcattatta aatttctgaa attacaacaa ctgtgccagc cggttgatat
    34021 ccgactgaat cgccccggcg gtgacgtcgc gccccgcgcc aggcccacgg atcaccagcg
    34081 ggttgtcgcg ataccagcgg ctttcgatgg caaagacgtt atcgcacggc agcagtgatg
    34141 ccagcggatg gtcttcacgc accgcctcca cgcccacacg cgctttgccg ttggcatcga
    34201 aacgcaccac gtagcgcagc accagcccca tttcgcgggc cgcttccagc cgttgcacca
    34261 tctgctcgtt aagttcatcg ccattttcaa agaaatggtc gatgctgccg ccttcgcaat
    34321 gagcaggcac cagcgattcc acacgtacct ggtccggttc aatgttgtaa cccgcttcac
    34381 gcgccagaat taccagcttg cgcattacgt ctttgccgga gaggtcgtca cgcggatcag
    34441 gctcggttaa gccctgctgc cacgcctgat ccaccagctc ggtaaacggc acgctaccgt
    34501 cgaattgcag gaacagccag gagagcgtgc cggagaagat cccgctgatc gacaaaatag
    34561 tatcgccgct gtcgatcaga tcgcgcacgg tgtggttgat cggcaagccc gcaccgacgg
    34621 tggcattgta cagccagtga cgcccggttt tttcgaaggc gtcgtggatc tggcgatatt
    34681 tattgctgtc gctggctccc gccagtttgt tggcgctgat aacgtggaaa ccgtggctgg
    34741 cgaaatcaag atactgatca gcaagctgct ggctggcggt aacgtccagc accactaaat
    34801 catcatacgg atgggcgcgc atccacagga acaacgactc ttcatcctgc tcaaccgctt
    34861 catcgttgaa gaaggctaac gcgcggctgg cgtccagccc gtcatagctc aacaggctgc
    34921 ggcggctgtc caccacacct gccagcacaa actcaaagcc ggtacgtgcc gaaagcgtgc
    34981 tctgctcacg ggcgaacagt tccagccaac gggaaccgat attgccctta ccgaacaata
    35041 ccaggccgat gcgtttttct gcgcggaaga cggactgatg cagcccctga atcaggcttt
    35101 cggtcgggcc ggtgcgcagt actgccacca ggctgatgcc gtcatcggac tgccaggtaa
    35161 attcgaccgg ctggcctttc agttgctgcc agaagcggtg gcaatgcagc gggttacggg
    35221 tgacgcctgc accgaccatc gccaccagcg ccagcccctg acgcaggcgc agttcgccag
    35281 gtaatcccgc ttcgtcgagg attttcagcg cactgtcggc cacttctgag gtgtagcaaa
    35341 attgcagcaa ctggcgatcg ttatgtacgc caaccgccag cgggcgtacc tgcgcgcgtt
    35401 tcaggatttg gtcgatctct ttatgcacca gtttgaaatc ctgactggcg ggcacctgaa
    35461 actcaatcaa acagacatca tcgtggctgg tgacaatacg cgcaccagta ccggaggcca
    35521 gcacgcgttc aatgcgcgtg gaaccttgat ccggcgtgta gctacagcgc agttgcaggt
    35581 cgatttcgct gccagaaacc ggctgtaaag tacgggcgtg aagaacggga gccgccaggc
    35641 gcgccagttc gctggcctca tccagacgca gcaacggcag caggcaggca tctttcactt
    35701 tacgcgggtc ggcactgtat accccggcga cgtcgctcca gatggttacg cgagaaacac
    35761 ccgccagcgc accgatttgt gtcgcggaat agtcggaacc gttacgcccc agcagcaccg
    35821 tttcaccggc gttgttgcgg ctgataaatc cggtcaccac cagacgtttg cccggatgtt
    35881 gcaccagcag ctgttgcagc aacgggtaag aaagcccttc atcaacctgc ggttgtgcgg
    35941 cgcgttcagc gcgtaaaaac tcgcgggcat caagccaggc cgctggcagc ccttgttgat
    36001 taagtaccgc agacatcagg cgtgccgacc atacttcccc gtggcccacc acttccgcat
    36061 acactgcgtc gttaataccg ctgtcgagca gcgccgctag gcgctcaagg tcgctgacaa
    36121 aagcgctaat gaggctatca gcttcttcag cgggtagcag accgctaatc agatcgcact
    36181 gatagcgacg ctgcgtttgt tgaacctgat gcgcagagag acgatcggtc tggcttagtt
    36241 tcaaccagtt aatcaactgg ttagtggtgc taccggcggc ggaaaccacc atcatatcgt
    36301 caggctgaga gtactccgcc ataatgcccg caacacgcaa ataacacttc acatcagcca
    36361 gactactgcc accaaattta tgcagttgac gacctttcgc ccctgcctgc gcaatcacac
    36421 tcatttttac cccttgtttg cagcccggaa gccattttcc aggtcggcaa ttaaatcttc
    36481 gccatcttca ataccggtgg agatacgcag cagcgtctcg gagatcccgg cggcagcacg
    36541 cgcttctggt gccatgcctg catgtgtcat ggttgcggcg tgagagatta aactttccac
    36601 tccccctaat gattccgcca gcgtaaacaa cgacagcccg cccaggaaac gacgcagcgt
    36661 ctgctcatct ccatccagtt caaaactcaa cattgcgcca aagccttttt gctggcgcgc
    36721 ggcaatttca tgcccctgat tttccggcag cgacgggtga tacagttttt tcaccaacgg
    36781 ctgggtttgc agatatttca caatcgcctg cgcgttgcgc tgggccagct ccatacgcgg
    36841 caccagcgtt cgcaacccgc gtagcagcag atagctgtca aacgcgccgc ccgtcacgcc
    36901 aatattgttt gtccaccagg caagttcagt gacaacgtcc gggtctttag caatcaccac
    36961 gccagccacc acgtcagagt gaccgttcag atatttcgta catgaatgca acaccagatc
    37021 ggcacccaat gccagcggat tttgtaatgc cgggcttaag aaggtgttat ccaccacgct
    37081 caccgccccg acttcccttg ccagatggca gattttcgca atatccacga cgcgtaacaa
    37141 tggattactt gggctttcta ccagtaccag tttgggtttt tctgccagcg ctgcccgtaa
    37201 tgcctgttca tcgccttgat caacaaacaa cacgcgatag caaccgcgtt tcaccagact
    37261 gtcgaacagg cgatagctac cgccgtagca gtcgtgcggc gcaaccagca gatcgccagg
    37321 tttcaaaaag acggtcgtga ccaagtgaat cgcggacatg ccggtattag taagtactgc
    37381 gccagcaccg ccttccagtt ctgccagcgc acgctgaacc acatcgcgcg ttgggttgcc
    37441 gcgacgcgag taatcatgcg cgcgcggttc attaaatccg gtaaagttat aggtgctgga
    37501 aagatggatg ggagggacaa cgcaaccata ctgttcgtcg tcatttaacc cgctacgcac
    37561 tgcgatggtg gcctgtttac gcgtcatgtg atgaagtttc ctgggctttg tcggtgaaat
    37621 gtcaggcacc agagtaaaca ttgtgttaat ggacgtcaat acatctggac atctaaactt
    37681 ctttgcgtat agattgagca aatcccaaat agccgttaaa attatatgca ttatcacgcc
    37741 gacaggtgca ttacacgatg tcacggtaac gcctgtacgg taaactatgc gggtttacgg
    37801 tcagtaccca cataaattgt gtggtctggt ctcaatttat tgacgaagag gattaagtat
    37861 ctcatggctg aatggagcgg cgaatatatc agcccatacg ctgagcacgg caagaagagt
    37921 gaacaagtca aaaagattac ggtttccatt cctcttaagg tgttaaaaat cctcaccgat
    37981 gaacgcacgc gtcgtcaggt gaacaacctg cgtcacgcta ccaacagcga gctgctgtgc
    38041 gaagcgtttc tgcatgcctt taccgggcaa cctttgccgg atgatgccga tctgcgtaaa
    38101 gagcgcagcg acgaaatccc ggaagcggca aaagagatca tgcgtgagat ggggattaac
    38161 ccggagacgt gggaatacta aagcaaaaaa gagcggcgcg gagtggaatc gcctgatgcg
    38221 ctacgcttat caggcctacg tcatattgca atttattgaa tttgcacgaa cttgtaggcc
    38281 ggataaggcg ttcacgccgc atccggcata aacaacgagc acgttgtctg cgacccaccg
    38341 ctttttatac atggacgttt aactatgaaa aacaggctgc tgatcctcag cctgctggtt
    38401 tctgtacctg cctttgcctg gcagccacaa accggcgaca tcatctttca gatctctcgc
    38461 tcatcgcaaa gtaaagcgat ccaactggcg acccattccg attatagcca caccggtatg
    38521 ctggtgatac gcaacaaaaa gccctacgtt tttgaagcgg tcggcccggt gaaatacacc
    38581 ccgctcaagc agtggatcgc ccatggtgaa aagggcaaat acgttgttcg ccgcgttgaa
    38641 ggcggactga gtgttgaaca acagcaaaaa ctggcgcaaa cggtaaaacg ttatctcggt
    38701 aaaccgtatg atttcagctt ctcatggagc gacgatcgcc agtactgttc ggaagtggtg
    38761 tggaaggttt accagaacgc gctgggaatg cgcgtgggcg agcagcagaa gttgaaagag
    38821 ttcgatctca gcaacccgct ggtccaggct aagctcaaag aacgctacgg caaaaatatt
    38881 ccgcttgagg aaacggtagt ttcaccacaa gccgttttcg acgcgccaca actcaccacg
    38941 gttgccaaag agtggccgct gttttcgtgg taatggatga tgaaaaaaat aattcccgcc
    39001 gtagtctgtt tgttgctttg tagttgcacg acctttccgc aaactgtcgc tccggtaaac
    39061 ggtgatgcct ccaattagtt gaattaagga tataatactc gcttttaagg ttgtttcatg
    39121 gtcacagtta accttcattg cccccgttgc cagtccgttc aggtttaccg tcacgggcag
    39181 aacccaaaaa gacatgatcg attccgcggc cgtgactgtc accgggtatt tcagctcagt
    39241 tactgttacg agccccgtaa accgggagtt aaagaccaaa tcgctgaaat gactttcaac
    39301 ggtgccgggg ttcgcgatac tgcccgtacg ctgaaaatcg gcattaatac agtcatccga
    39361 actttaaaaa actctcgcca cgaagaataa cgtcatcccc ggtcgctcat gctgatgtgg
    39421 cactcatctg cgaacttagt cagcaatgga gctttgtcgg cagtaaagcg cgacagcact
    39481 ggctctggta cgtgtacaac acgaaaactg gtggtgttct ggcctacact tttggccccc
    39541 ggactgacga aacctgtcgt gaattgctgg cgctgcttac ccttttacca tcggcatgtt
    39601 gaccactgac gaatggggta gttacaccag agagttaccg aaggaaaagc atctgactgg
    39661 taagattttt actcagcgca ttgagcgcaa caatctgacc ctgagaaccc gaatcaaacg
    39721 tctggcccgc agaaccatct gtttctcgcg ctctgtagaa cttcatgaaa aagtcatcgg
    39781 tgcttttatc aaaaatatat gttctactaa ttggagtcat c
//
LOCUS       DADMHM010000009        39374 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.009, whole genome shotgun sequence.
ACCESSION   DADMHM010000009 DADMHM010000000
VERSION     DADMHM010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 39374)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 39374)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..39374
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.009"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(147..1031)
                     /locus_tag="JN125_000447"
     CDS             complement(147..1031)
                     /locus_tag="JN125_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-specific channel-forming protein Tsx"
                     /protein_id="HAY8870333.1"
                     /translation="MKKTLLAAGAVLALSSSFTVNAAENDKPQYLSDWWHQSVNVVGS
                     YHTRFGPQIRNDTYLEYEAFAKKDWFDFYGYADAPVFFGGNSDAKGIWNHGSPLFMEI
                     EPRFSIDKLTNTDLNFGPFKEWYFANNYIYDMGRNKNGRQSTWYMGLGTDIDTGLPMS
                     LSMNVYAKYQWQNYGAANENEWDGYRFKIKYFVPITDLWGGQLSYIGFTNFDWGSDLG
                     DDSGNAINGIKTRTNNSIASSHILALNYDHWHYSVVARYWHDGGQWNDDAELNFGNGN
                     FNVRSTGWGGYLVVGYNF"
     gene            complement(1330..1869)
                     /locus_tag="JN125_000448"
     CDS             complement(1330..1869)
                     /locus_tag="JN125_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414946.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3251 domain-containing protein"
                     /protein_id="HAY8870334.1"
                     /translation="MNTNVFRLLLLGSLFSLSACVQQSEVRQMKHSVSTLNQEMTQLN
                     QETVKITQQNRLNAKSSSGGYLLPGAKTPARLESQIGTLRMSLVNITPDTDGTPLTLR
                     IQGESNDPLPAFSGTVEYGQIQGTIDNFQEINVQNQLINAPASVLAPSDVDIPLQLKG
                     ISVDQLGFVRIHDIQPVMQ"
     gene            2020..2469
                     /gene="nrdR"
                     /locus_tag="JN125_000449"
     CDS             2020..2469
                     /gene="nrdR"
                     /locus_tag="JN125_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017458860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HAY8870335.1"
                     /translation="MHCPFCFAVDTKVIDSRLVGGGSSVRRRRQCLVCNERFTTFEVA
                     ELVMPRVVKSNDVREPFNEEKLRSGMLRALEKRPVSSDDVEMAINHIKSQLRATGERE
                     VPSKMIGNLVMEQLKKLDKVAYIRFASVYRSFEDIKEFGEEIARLED"
     gene            2473..3576
                     /gene="ribD"
                     /locus_tag="JN125_000450"
     CDS             2473..3576
                     /gene="ribD"
                     /locus_tag="JN125_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HAY8870336.1"
                     /translation="MQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQ
                     RAGEPHAEVHALRMAGEKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQD
                     PNPQVAGRGLYRLQQAGIDVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGR
                     TAMASGESQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWSELDEQTQAL
                     YPQQNLRQPVRIVIDSQNRVTPEHHIVQQPGETWFARTQEDSREWPETVRTLLIPEHK
                     GHLDLVVLMMQLGKQQINSIWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLC
                     TLPGLEKLADAPQFKFKEIRHVGPDVCLHLVGA"
     gene            3665..4135
                     /gene="ribE"
                     /locus_tag="JN125_000451"
     CDS             3665..4135
                     /gene="ribE"
                     /locus_tag="JN125_000451"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006818760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HAY8870337.1"
                     /translation="MNIIEANVATPDARVAITIARFNNFINDSLLEGAIDALKRIGQV
                     KDENITVVWVPGAYELPLAAGALAKTGKYDAVIALGTVIRGGTAHFEYVAGGASNGLA
                     HVAQDSEIPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA"
     gene            4155..4574
                     /gene="nusB"
                     /locus_tag="JN125_000452"
     CDS             4155..4574
                     /gene="nusB"
                     /locus_tag="JN125_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HAY8870338.1"
                     /translation="MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD
                     VLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKV
                     AINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK"
     gene            4652..5629
                     /gene="thiL"
                     /locus_tag="JN125_000453"
     CDS             4652..5629
                     /gene="thiL"
                     /locus_tag="JN125_000453"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HAY8870339.1"
                     /translation="MACGEFSLIARYFDRVRSSRLDVELGIGDDCALLNIPEKQTLAI
                     STDTLVAGNHFLPDIDPADLAYKALAVNLSDLAAMGADPAWLTLALTLPDVDEAWLES
                     FSDSLFDLLNYYDMQLIGGDTTRGPLSMTLGIHGFVPMGRALTRSGAKPGDWIYVTGT
                     PGDSAAGLAILQNRLQVADAKDADYLIKRHLRPSPRILQGQALRDLANSAIDLSDGLI
                     SDLGHIVKASDCGARIDLALLPFSDALSRHVEPEQALRWALSGGEDYELCFTVPELNR
                     GALDVALGHLGVPFTCIGQMTADIEGLCFIRDGEPVTLDWKGYDHFATP"
     gene            5607..6125
                     /gene="pgpA"
                     /locus_tag="JN125_000454"
     CDS             5607..6125
                     /gene="pgpA"
                     /locus_tag="JN125_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HAY8870340.1"
                     /translation="MTILPRHKDVAKSRLKMSNPWHLLAVGFGSGLSPIVPGTMGSLA
                     AIPFWYLMTFLPWQLYSLVVMLGICIGVYLCHQTAKDMGVHDHGSIVWDEFIGMWITL
                     MALPTNDWQWVAAGFVIFRILDMWKPWPIRWFDRNVHGGMGIMIDDIVAGVISAGILY
                     FIGHHWPLGILS"
     gene            complement(6179..7153)
                     /gene="yajO"
                     /locus_tag="JN125_000455"
     CDS             complement(6179..7153)
                     /gene="yajO"
                     /locus_tag="JN125_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414953.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxyxylulose-5-phosphate synthase YajO"
                     /protein_id="HAY8870341.1"
                     /translation="MQYNPLGKTDLRVSRLCLGCMTFGEPDRGNHAWTLPEESSRPII
                     KRALEGGINFFDTANSYSDGSSEEIVGRALRDFARREDVVVATKVFHRVGDLPEGLSR
                     AQILRSIDDSLRRLGMDYVDILQIHRWDYNTPIEETLEALNDVVKAGKARYIGASSMH
                     ASQFAQALELQKQHGWAQFVSMQDHYNLIYREEEREMLPLCYQEGVAVIPWSPLARGR
                     LTRPWGETTARLVSDEVGKNLYKESDENDAQIAERLTGVSEELGATRAQVALAWLLSK
                     PGIAAPIIGTSREEQLDELLNAVDITLKPEQIAELETPYKPHPVVGFK"
     gene            complement(7208..9070)
                     /gene="dxs"
                     /locus_tag="JN125_000456"
     CDS             complement(7208..9070)
                     /gene="dxs"
                     /locus_tag="JN125_000456"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HAY8870342.1"
                     /translation="MSFDIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVS
                     RSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKG
                     GLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMA
                     FEAMNHAGDIRPDMLVVLNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSG
                     VPPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRDLKGPQ
                     FLHIMTKKGRGYEPAEKDPITFHAVPKFDPSSGCLPKSSGGLPSYSKIFGDWLCETAA
                     KDNKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIY
                     STFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMT
                     PSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEKLPIGKGIVKRRGEKLAI
                     LNFGTLMPEAAKVAESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAG
                     SGVNEVLMAHRKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWLA"
     gene            complement(9095..9994)
                     /gene="ispA"
                     /locus_tag="JN125_000457"
     CDS             complement(9095..9994)
                     /gene="ispA"
                     /locus_tag="JN125_000457"
                     /EC_number="2.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2E,6E)-farnesyl diphosphate synthase"
                     /protein_id="HAY8870343.1"
                     /translation="MDFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGG
                     KRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCH
                     VKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQAL
                     DLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLA
                     FQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQ
                     LAEQSLDTSALEALADYIIQRNK"
     gene            complement(9994..10236)
                     /gene="xseB"
                     /locus_tag="JN125_000458"
     CDS             complement(9994..10236)
                     /gene="xseB"
                     /locus_tag="JN125_000458"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015571292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HAY8870344.1"
                     /translation="MPKKNEAPASFEKALSELEQIVTRLESGDLPLEEALNEFERGVQ
                     LARQGQAKLQQAEQRVQILLSDNEDASLTPFTPDNE"
     gene            10442..11890
                     /gene="thiI"
                     /locus_tag="JN125_000459"
     CDS             10442..11890
                     /gene="thiI"
                     /locus_tag="JN125_000459"
                     /EC_number="2.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014168857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 4-thiouridine(8) synthase ThiI"
                     /protein_id="HAY8870345.1"
                     /translation="MKFIIKLFPEITIKSQSVRLRFIKILTGNIRNVLKHYDETLAVV
                     RHWDNIEVRAKDENQRLAIRDALTRIPGIHHILEVEDVPFTDMHDIFEKALVQYRDQL
                     EGKTFCVRVKRRGKHDFSSIDVERYVGGGLNQHIESARVKLTNPEVTVHLEVEDDRLL
                     LIKGRYEGIGGFPIGTQEDVLSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAAHEI
                     GVRQVAHYLWNRFGSSHRVRFVAINFEPVVGEILEKIDDGQMGVILKRMMVRAASKVA
                     ERYGVQALVTGEALGQVSSQTLTNLRLIDNVSDTLILRPLISYDKEHIINLARQIGTE
                     DFARTMPEYCGVISKSPTVKAVKSKIEAEEEKFDFSILDKVVEEANNVDIREIAQQTE
                     QEVVEVETVNGFGSNDVILDIRSIDEQEDKPLKVEGIDVVSLPFYKLSTKFGDLDQNR
                     TWLLWCERGVMSRLQALYLREQGFNNVKVYRP"
     gene            complement(11944..12534)
                     /gene="yajL"
                     /locus_tag="JN125_000460"
     CDS             complement(11944..12534)
                     /gene="yajL"
                     /locus_tag="JN125_000460"
                     /EC_number="3.5.1.124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308505.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein deglycase YajL"
                     /protein_id="HAY8870346.1"
                     /translation="MSASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLA
                     ITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECFRDSTLLVETVKQFHRSGRIV
                     AAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWQDKRVVWDARVKLLTSQGPGT
                     AIDFGLKIIDLLVGREKAHEVASQLVMAAGIYNYYE"
     gene            complement(12497..13408)
                     /gene="panE"
                     /locus_tag="JN125_000461"
     CDS             complement(12497..13408)
                     /gene="panE"
                     /locus_tag="JN125_000461"
                     /EC_number="1.1.1.169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HAY8870347.1"
                     /translation="MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVET
                     DGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGT
                     IEELQNIQQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLADILQTVL
                     PDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIERE
                     GHHTSAEDLRHYVMQVIDATAENISSMLQDIRALRHTEIDYINGFLLRRARAHGIAVP
                     ENTRLFEMVKRKESEYERIGTGLPRPW"
     gene            13576..14067
                     /gene="yajQ"
                     /locus_tag="JN125_000462"
     CDS             13576..14067
                     /gene="yajQ"
                     /locus_tag="JN125_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414960.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide binding protein YajQ"
                     /protein_id="HAY8870348.1"
                     /translation="MPSFDIVSEVDLQEARNAVDNASREVESRFDFRNVEASFELNDA
                     SKTIKVLSESDFQVNQLLDILRAKLLKRGIEGSSLDVPENIVHSGKTWFVEAKLKQGI
                     ESATQKKIVKMIKDSKLKVQAQIQGDEIRVTGKSRDDLQAVMAMVRGGDLGQPFQFKN
                     FRD"
     gene            complement(14195..15559)
                     /locus_tag="JN125_000463"
     CDS             complement(14195..15559)
                     /locus_tag="JN125_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308508.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8870349.1"
                     /translation="MNDYKMTPGERRATWGLGTVFSLRMLGMFMVLPVLTTYGMALQG
                     ASEALIGIAIGIYGLTQAVFQIPFGLLSDRIGRKPLIVGGLAVFAAGSVIAALSDSIW
                     GIILGRALQGSGAIAAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIITH
                     KLGLHALFWMIAILATTGIALTIWVVPNSSTHVLNRESGMVKGSFSKVLAEPRLLKLN
                     FGIMCLHILLMSTFVALPGQLADAGFPAAEHWKVYLATMLIAFGSVVPFIIYAEVKRK
                     MKQVFVFCVGLIVVAEIVLWNAQTQFWQLVVGVQLFFVAFNLMEALLPSLISKESPAG
                     YKGTAMGVYSTSQFLGVAIGGSLGGWIDGMFDGQGVFLAGAMLAAVWLAVASTMKEPA
                     YVSSLRIEIPANIAANEALKVRLLETEGIKEVLIAEEEHSAYVKIDSKVTNRFDVEQA
                     IRQA"
     gene            complement(15708..16598)
                     /gene="cyoE"
                     /locus_tag="JN125_000464"
     CDS             complement(15708..16598)
                     /gene="cyoE"
                     /locus_tag="JN125_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoheme IX farnesyltransferase"
                     /protein_id="HAY8870350.1"
                     /translation="MMFKQYLQVTKPGIIFGNLISVIGGFLLASKGSIDYPLFIYTLV
                     GVSLVVASGCVFNNYIDRDIDRKMERTKNRVLVKGLISPAVSLVYVTLLGIAGFMLLW
                     FGANPLACWLGVMGFVVYVGVYSLYMKRHSVYGTLIGSLSGAAPPVIGYCAVTGEFDS
                     GAAILLAIFSLWQMPHSYAIAIFRFKDYQAANIPVLPVVKGISVAKNHITLYIIAFAV
                     ATLMLSLGGYAGYKYLVVAAAVSVWWLGMALRGYKVADDRIWARKLFGFSIIAITALS
                     VMMSVDFMVPDSHTLLAAVW"
     gene            complement(16610..16939)
                     /locus_tag="JN125_000465"
     CDS             complement(16610..16939)
                     /locus_tag="JN125_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit IV"
                     /protein_id="HAY8870351.1"
                     /translation="MSHSTDHSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPA
                     VILGTIRAMAVVQVLVHLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMWNL
                     NYNMMMH"
     gene            complement(16939..17553)
                     /locus_tag="JN125_000466"
     CDS             complement(16939..17553)
                     /locus_tag="JN125_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit III"
                     /protein_id="HAY8870352.1"
                     /translation="MATDTLTHATAHAHEHGHHDAGGTKIFGFWIYLMSDCILFSILF
                     ATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWL
                     ALTCLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVL
                     MVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGAM"
     gene            complement(17543..19534)
                     /gene="cyoB"
                     /locus_tag="JN125_000467"
     CDS             complement(17543..19534)
                     /gene="cyoB"
                     /locus_tag="JN125_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002444673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit I"
                     /protein_id="HAY8870353.1"
                     /translation="MFGKLSLDAVPFHEPIVMVTIAGIILGGLALVGLITYFGKWTYL
                     WKEWLTSVDHKRLGIMYIIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQI
                     FTAHGVIMIFFVAMPFVIGLMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNVSL
                     GVGEFAQTGWLAYPPLSGIEYSPGVGVDYWIWSLQLSGIGTTLTGINFFVTILKMRAP
                     GMTMFKMPVFTWASLCANVLIIASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYI
                     NLIWAWGHPEVYILIQPVFGVFSEIAATFSRKRLFGYTSLVWATVCITVLSFIVWLHH
                     FFTMGAGANVNAFFGITTMIIAIPTGVKTFNWLFTMYQGRIVFHSAMLWTIGFIVTFS
                     VGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCFAGMTYWWPKAFGFKLNE
                     TWGKRAFWFWIIGFFVAFMPLYALGFMGMTRRLSQQIDPQFHTMLMIAASGAVLIALG
                     ILCLVIQMYVSIRDRDQNRDLTGDPWGGRTLEWATSSPPPFYNFAVVPHVHERDAFWE
                     MKEKGEAYKKPDHYEEIHMPKNSGAGIVIAAFSTIFGFAMIWHIWWLAIVGFAGMIIT
                     WIVKSFDEDVDYYVPVAEIEKLENQHFDEITKAGLKNGN"
     gene            complement(19556..20503)
                     /gene="cyoA"
                     /locus_tag="JN125_000468"
     CDS             complement(19556..20503)
                     /gene="cyoA"
                     /locus_tag="JN125_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome o ubiquinol oxidase subunit II"
                     /protein_id="HAY8870354.1"
                     /translation="MRLRKYNKSLGWLSLFAGTVLLSGCNSALLDPKGQIGLEQRSLI
                     LTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIF
                     LAVLTWKTTHALEPSKPLAHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTP
                     VYFKVTSNSVMNSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGM
                     KFKAIATPDRAEFDQWVAKAKQSPNTMSDMAAFEKLAAPSEYNQVEYFSNVKPDLFAD
                     VINKFMAHGKSMDMTQPEGEHSAHEGMESMDMSHAESAH"
     gene            complement(20964..22439)
                     /gene="ampG"
                     /locus_tag="JN125_000469"
     CDS             complement(20964..22439)
                     /gene="ampG"
                     /locus_tag="JN125_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="muropeptide MFS transporter AmpG"
                     /protein_id="HAY8870355.1"
                     /translation="MSSQYLRIFQQPRSAILLILGFASGLPLALTSGTLQAWMTVENI
                     DLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFFGRRRGWLLATQILLLVAIAAMGFLE
                     PGTQLRWMAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLGMLVSG
                     GLALWLADKWLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPVPKTLEQAVVAPLRDF
                     FGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGVVNKTLGLLATIVGA
                     LYGGILMQRLSLFRALLIFGILQGASNAGYWLLSITDKHLYSMGAAVFFENLCGGMGT
                     SAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWSTFYLFSVAAA
                     VPGLILLLVCRQTLEYTRVNDNFISRTEYPAGYAFAMWTLAAGVSLLAVWLLLLTMDA
                     LDLTHFSFLPALLEVGVLVALSGVVLGGLLDYLALRKTHLT"
     gene            complement(22483..23061)
                     /locus_tag="JN125_000470"
     CDS             complement(22483..23061)
                     /locus_tag="JN125_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414968.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HAY8870356.1"
                     /translation="MFKKILFPLVALFMLAGCAKPPTTIEISPTITLPQQDPSLMGVT
                     VSINGADQRTDQALAKVTRDNQIVTLTASRDLRFLLQEVLEKQMTARGYMVGPNGPVN
                     LQIIVSQLYADVSQGNVRYNIATKADIAIIATAQNGNKITKNYRASYNVEGAFQASNK
                     NIADAVNSVLTDTIADMSQDTSIHEFIKQNAR"
     gene            23366..23683
                     /gene="bolA"
                     /locus_tag="JN125_000471"
     CDS             23366..23683
                     /gene="bolA"
                     /locus_tag="JN125_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414969.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator BolA"
                     /protein_id="HAY8870357.1"
                     /translation="MMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLV
                     SDRFTGERFLNRHRMIYSTLAEELSTTVHALALHTYTIKEWEGLQDTVFASPPCRGAG
                     SIA"
     gene            24027..25325
                     /gene="tig"
                     /locus_tag="JN125_000472"
     CDS             24027..25325
                     /gene="tig"
                     /locus_tag="JN125_000472"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001716227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HAY8870358.1"
                     /translation="MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGF
                     RKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAIIKEKINPAGAPTYVPGEYKLGED
                     FTYSVEFEVYPEVELQGLEAIEVEKPIVEVTDADVDGMLDTLRKQQATWKEKDGAVEA
                     EDRVTIDFTGSVDSEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFP
                     EEYHAENLKGKAAKFAINLKKVEERELPELTAEFIKRFGVEDGSVEGLRAEVRKNMER
                     ELKSAIRNRVKSQAIEGLVKANDIDVPAALIDSEIDVLRRQAAQRFGGNEKQALELPR
                     ELFEEQAKRRVVVGLLLGEVIRTNELKADEERVKGLIEEMASAYEDPKEVIEFYSKNK
                     ELMDNMRNVALEEQAVEAVLAKAKVTEKETTFNELMNQQA"
     gene            25571..26194
                     /gene="clpP"
                     /locus_tag="JN125_000473"
     CDS             25571..26194
                     /gene="clpP"
                     /locus_tag="JN125_000473"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HAY8870359.1"
                     /translation="MSYSGERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIF
                     LTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVS
                     TICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVK
                     GRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN"
     gene            26320..27594
                     /gene="clpX"
                     /locus_tag="JN125_000474"
     CDS             26320..27594
                     /gene="clpX"
                     /locus_tag="JN125_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001396736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATP-binding subunit ClpX"
                     /protein_id="HAY8870360.1"
                     /translation="MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLC
                     NDIIREEIKEVAPHRERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG
                     DTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVEN
                     IIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT
                     VAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKA
                     KSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALT
                     KQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMED
                     VEKVVIDESVIDGQSKPLLIYGKPEAQQASGE"
     gene            27782..30136
                     /gene="lon"
                     /locus_tag="JN125_000475"
     CDS             27782..30136
                     /gene="lon"
                     /locus_tag="JN125_000475"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001469947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HAY8870361.1"
                     /translation="MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAM
                     DHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISA
                     LSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSID
                     DPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVK
                     KQMEKSQREYYLNEQMKAIQKELGEMDDAPDENEALKRKIDAAKMPKEAKEKAEAELQ
                     KLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRI
                     LEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIR
                     GHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNV
                     AFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLP
                     KQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLK
                     HIEINGDNLHDYLGVQRFDYGRADNENCVGQVTGLAWTEVGGDLLTIETACVPGKGKL
                     TYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKSDIHVHVPEGATPKDGPSAGI
                     AMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFEN
                     KRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGMQVVTAK"
     gene            30345..30617
                     /gene="hupB"
                     /locus_tag="JN125_000476"
     CDS             30345..30617
                     /gene="hupB"
                     /locus_tag="JN125_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016535194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein HU-beta"
                     /protein_id="HAY8870362.1"
                     /translation="MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVAL
                     VGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN"
     gene            30809..32680
                     /gene="ppiD"
                     /locus_tag="JN125_000477"
     CDS             30809..32680
                     /gene="ppiD"
                     /locus_tag="JN125_000477"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HAY8870363.1"
                     /translation="MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNYAAK
                     VNDQEISRGQFENAFNSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLD
                     QYARELKLGISDEQVKQAIFATPAFLVDGKFDNSRYNGILNQMGMTADQYAQALRNQL
                     TTQQLINGVAGTDFMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYY
                     EQNKNNFMTPEQFRVSYIKLDAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQT
                     KTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLKE
                     KGQLSGVIKSSVGFLIVRLDDIHPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVS
                     DAASNDTESLAGAEQAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGAPG
                     INSDIITVDGDRAFVLRISEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLV
                     DLKAGKGAEAMQAAGLKFGEPKTLSRSGRDPISQAAFALPLPAKDKPSYGMATDMQGN
                     VVLLALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ"
     gene            32831..33202
                     /locus_tag="JN125_000478"
     CDS             32831..33202
                     /locus_tag="JN125_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870364.1"
                     /translation="MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAA
                     QSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVED
                     LKQVPGMGNSLVERNLAVLTL"
     gene            33296..33694
                     /locus_tag="JN125_000479"
     CDS             33296..33694
                     /locus_tag="JN125_000479"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbgC/FadM family acyl-CoA thioesterase"
                     /protein_id="HAY8870365.1"
                     /translation="MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDSFQWM
                     TAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILSQVITLEPEGQVVADA
                     LITFVCIDLKTQKALALEGELREKLEQMVK"
     gene            complement(33746..34441)
                     /gene="queC"
                     /locus_tag="JN125_000480"
     CDS             complement(33746..34441)
                     /gene="queC"
                     /locus_tag="JN125_000480"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HAY8870366.1"
                     /translation="MKRAVVVFSGGQDSTTCLVQALQQYDEVHCVTFDYGQRHRAEID
                     VARELALKLGARAHKVLDVTLLNELAVSSLTRDSIPVPDYEPEADGIPNTFVPGRNIL
                     FLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHAVSLGMAKDIRFETPL
                     MWIDKAETWALADYYGKLDLVRNETLTCYNGIKGDGCGHCAACNLRANGLNHYLADKP
                     TVMAAMKQKTGLR"
     gene            complement(34506..36206)
                     /locus_tag="JN125_000481"
     CDS             complement(34506..36206)
                     /locus_tag="JN125_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SgrR family transcriptional regulator"
                     /protein_id="HAY8870367.1"
                     /translation="MRLLNRLNQYQRLWQPSAGKPQTVTVSELAERCFCSERHVRTLL
                     RQAQEAGWLEWQAQSGRGKRGQLRFLVTPESLRNAMMEQALETGKQQDVLELAQLAPG
                     ELRTLLQPFMGGQWQNDTPTLRIPYYRPLEPLQPGFLPGRAEQHLAGQIFSGLTRFDN
                     NTQRPIGDLAHHWETSTDGLRWDFYLRSTLHWHNGDAVKASHLHQRLLMLLQLPALDQ
                     LFISVKRIEVTHPQCLTFFLHRPDYWLAHRLASYCSHLAHPQFPLIGTGPFRLTQFTA
                     ELVRLESHDYYHLRHPLLKAVEYWITPPLFEKDLGTSCRHPVQITIGKPEELQRVSQV
                     SSGISLGFCYLTLRKSPRLSLWQARKVISIIHQSGLLQTLEVGENLITASHALLPGWT
                     IPHWQVPDEVKLPKTLTLVYHLPIELHTMAERLQATLAAEGCELTIIFHNAKNWDDTT
                     LLAHADLMMGDRLIGEAPEYTLEQWLRCDPLWPHVFDAPAYAHLQSTLDAVQVMPDEE
                     NRFNALKAVFSQLMADATLTPLFNYHYRISAPPGVNGVRLTPRGWFEFTEAWLPAPSQ
                     "
     gene            36306..37124
                     /gene="cof"
                     /locus_tag="JN125_000482"
     CDS             36306..37124
                     /gene="cof"
                     /locus_tag="JN125_000482"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414980.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HMP-PP phosphatase"
                     /protein_id="HAY8870368.1"
                     /translation="MARLAAFDMDGTLLMPDHHLGEKTLSTLARLRERDITLTFATGR
                     HALEMQHILGALSLDAYLITGNGTRVHSLEGELLHRDDLPADVAELVLYQQWDTRASM
                     HIFNDDGWFTGKEIPALLQAFVYSGFRYQIIDVKKMPLGSVTKICFCGDHDDLTRLQI
                     QLYEALGERAHLCFSATDCLEVLPVGCNKGAALTVLTQHLGLSLRDCMAFGDAMNDRE
                     MLGSVGSGFIMGNAMPQLRAELPHLPVIGHCRNQAVSHYLTHWLDYPHLPYSPE"
     gene            37190..37735
                     /locus_tag="JN125_000483"
     CDS             37190..37735
                     /locus_tag="JN125_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706341.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HAY8870369.1"
                     /translation="MVFKPHRINCRDFTFKIELKEKKILCGRAMLDKIDRKLLALLQQ
                     DCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGKVALLDPEKIGLGLTAFVLIKTQ
                     HHSSEWYCRFVTVVTEMPEVLGFWCMAGEYDYLMRVQVADMKRYDEFYKRLVNSVPGL
                     SDVTSSFAMEQIKYTTSLPIE"
     gene            37765..>39374
                     /locus_tag="JN125_000484"
     CDS             37765..>39374
                     /locus_tag="JN125_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SmdA family multidrug ABC transporter
                     permease/ATP-binding protein"
                     /protein_id="HAY8870370.1"
                     /translation="MRLFAQLSWYFRREWRRYLGAVALLVIIAMLQLVPPKVVGIVVD
                     GVTEQHFTTGQILMWIATMVLIAVVVYFLRYVWRVLLFGASYQLAVELREDYYRQLSR
                     QHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIMMSTQISWQL
                     TLFALLPMPVMAIMIKRNGDALHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDR
                     QSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVQGSLTLGQ
                     LTSFMMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVNDGSEPVPEGRGE
                     LDVNIHQFTYPQTDHPALENVNFALKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGD
                     IRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGCPNATQQEIEHVARLAS
                     VHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLVNAEILILDDALSAVDGRTE
                     HQILHNLRQWGQGRTVIISAHRLSALTEA"
BASE COUNT         9853 a         9844 c        10461 g         9216 t
ORIGIN      
        1 cttatcaggc ctacgttatt tcagcaatat attgaattta cgtgcttttg tgggccggac
       61 aaagcgttta cgccgcatcc ggcatgaaca aagctcacgt tgttaacaat cagaaatgcc
      121 gggaataaat cccggcattt tcataatcag aagttgtaac ctactaccag gtaaccaccc
      181 cagccggtag agcgaacgtt gaagttgccg ttgccgaagt tcagttctgc atcgtcgttc
      241 cactgaccac cgtcgtgcca gtaacgagct acgacagagt agtgccagtg atcgtagttc
      301 agagccagaa tatggctgga agcgatagag ttattagtac gggtcttaat accgttgatt
      361 gcgttaccgc tgtcatcccc taaatcggaa ccccagtcga agttggtgaa gccgatgtag
      421 ctcagctgac cgccccacag atcggtaatc ggcacaaagt atttaatttt gaaacggtaa
      481 ccgtcccact cgttttcgtt cgctgcgcca tagttctgcc actggtattt cgcatagacg
      541 ttcatggaca ggctcatcgg cagaccagta tcgatgtcgg tacccagacc catgtaccag
      601 gtgctctggc gaccattttt attacgaccc atgtcgtaaa tgtagttgtt cgcgaagtac
      661 cactctttga acggaccgaa gttaaggtca gtattggtca gcttgtcgat ggagaaacgt
      721 ggttcgattt ccataaacag cggagaaccg tggttccaga tacctttagc atcggagtta
      781 ccgccgaaga ataccggcgc atccgcataa ccatagaagt cgaaccagtc ttttttagcg
      841 aatgcttcgt actcaaggta ggtatcgttg cggatctgcg gtccgaaacg ggtgtgatag
      901 cttccgacaa cgttaacgct ctggtgccac cagtcggaaa gatactgcgg tttgtcgttt
      961 tcagctgcgt tgacagtaaa agacgaagag agcgccagta ccgcaccggc tgccagtaat
     1021 gtttttttca tatgtatgcc actgtttgaa aatcccttgc gggagtgaaa aaggcgcaaa
     1081 ttgcgtttct aaatatttcg tatacagagg agcctattat aaaaatcatt gctcacaaaa
     1141 atatgtttcg tttcacagtt ctatcattta cgtaatcgat tgcgttcacg tttacacaca
     1201 ttcgggcggg gattgtactg actttcgccc ttgttgcaaa cttttactat caatccaggt
     1261 gatgtaagca gagtaacaaa atgacgggga aagatgttgc gggacgcaca aaatcgtccc
     1321 gaaatacgtt tactgcataa caggttgaat gtcgtggata cgtacaaagc ctaactgatc
     1381 cacagaaatc ccctttaatt gtaacggaat atcaacatcg ctgggggcga ggacgctggc
     1441 aggggcatta atcaattgat tctgcacatt gatttcctga aagttgtcta ttgttccctg
     1501 aatttgccca tattcaacag ttccgctgaa tgcgggcaag ggatcattcg actcaccctg
     1561 aatacgtagt gtaagggggg tgccatctgt atcaggcgta atattcacca gcgacatacg
     1621 taaagtaccg atctggcttt ccagtcttgc cggtgttttc gctccaggca gaaggtaacc
     1681 cccactgctg gattttgcat tcagcctgtt ttgctgagtg attttgactg tttcttgatt
     1741 gagttgcgtc atctcctggt tcagcgtgct gacgctgtgt ttcatctgtc gcacttcact
     1801 ttgctgcaca caggcgctaa ggctgaacag gcttcccagc aggagcagtc gaaaaacgtt
     1861 agtattcata ggtcgtccct ttctcgtcgc aattagccta atggtagagg gtaaaagcag
     1921 cgaaagcatc gatcctttat ctcaaaagcg ttgcgccttt gttgtatcgt cagttcaggg
     1981 taaaatagat ttccgttaac cacctggtca ggacgccgta tgcattgccc attctgtttc
     2041 gccgtggaca ctaaggtaat tgactctcgt ctcgtgggcg ggggttcatc cgtacgccgc
     2101 cgtcggcagt gtctggtgtg taatgaacgt ttcaccacct ttgaagtggc ggagctggtt
     2161 atgccgcgtg ttgtaaaaag caacgacgtg cgtgaaccgt ttaatgaaga gaaattgcgt
     2221 agcggaatgc tgcgggcgct ggaaaaacgt ccggtgagtt ccgatgacgt tgaaatggca
     2281 atcaatcata ttaaatcgca gctgcgcgcc accggtgagc gcgaagtacc gagcaagatg
     2341 attggcaatc tggtgatgga gcaattgaaa aagctcgata aagtcgccta tatccgtttt
     2401 gcctctgtct accgcagttt cgaagatatc aaagaatttg gcgaagagat cgcgcgcctg
     2461 gaggactaag ccgtgcagga cgagtattac atggcgcggg cgctaaagct ggcgcaacga
     2521 ggacgtttta ccacccaccc caacccaaat gtcgggtgcg tcattgtcaa agatggcgaa
     2581 attgtcggtg aaggttacca tcaacgagcg ggtgaaccac atgccgaagt acacgcgttg
     2641 cgtatggcgg gtgaaaaagc caaaggtgca acggcgtatg tgacactcga accttgcagc
     2701 catcacggcc gtacgccgcc ttgctgtgat gctttaattg ccgcaggtgt ggcgcgcgtg
     2761 gttgcctcga tgcaagatcc taacccgcag gtcgctgggc gtggacttta ccgtctgcaa
     2821 caggctggca ttgacgtcag ccacggcctg atgatgagtg aagccgagca attgaataaa
     2881 ggctttctca agcggatgcg caccggcttt ccttatattc agttaaaact tggcgcatcg
     2941 cttgatggtc gcacggcgat ggcgagcggc gaaagccagt ggatcacttc gccccaggcg
     3001 cggcgtgatg tacaacgact gcgcgcgcaa agtcatgcca ttttaaccag cagcgccacg
     3061 gtgctggcgg atgatcctgc cttaacggtg cgttggtccg aactggatga acaaactcag
     3121 gcgctctacc cgcaacaaaa tctccgccag ccggtacgta ttgtgattga tagccaaaat
     3181 cgcgtgacgc cggaacatca cattgtgcag cagcccggcg aaacctggtt cgcgcgtacg
     3241 caggaagatt ctcgtgagtg gccggaaacg gtgcgtacct tgctgattcc agagcataaa
     3301 ggtcatctgg atctggttgt actgatgatg caactgggta aacagcagat taacagcatc
     3361 tgggtggaag cggggccaac gctcgctggc gcattgctgc aggcgggttt agtcgatgag
     3421 ctgattgtct atatcgcacc taaactatta ggcagcgacg cccgtggatt atgcaccctg
     3481 ccagggcttg agaaattagc cgacgccccc caatttaaat tcaaagagat acgtcatgta
     3541 ggcccggatg tttgcctgca tttagtgggt gcatgatctc ccggctcgaa agggaagcag
     3601 cgcacgaaat attatgctaa aatccgcccc cctgcggggc catactcgaa cccgaaggaa
     3661 gaaaatgaac attattgaag ctaacgttgc taccccggac gctcgcgtcg ccatcaccat
     3721 cgcgcgtttc aacaacttta tcaatgacag cctgctggaa ggtgcaattg acgcactgaa
     3781 acgtatcggt caggtaaaag atgaaaacat taccgttgtt tgggtgcctg gtgcctatga
     3841 gctgccgctg gcggcgggtg cactggctaa aaccggtaaa tacgacgcgg tgattgcgct
     3901 gggtacggtt attcgtggtg gcactgccca ttttgaatat gtcgctggtg gtgcaagcaa
     3961 cggcctggcg catgttgccc aggacagcga aattccggtt gcttttgggg ttctgaccac
     4021 tgaaagcatt gaacaagcga tcgaacgtgc tggcaccaaa gctggcaaca aaggtgcaga
     4081 agctgcactg accgcgcttg aaatgattaa tgtattgaaa gccatcaagg cctgaaatta
     4141 gtaaggggaa atccgtgaaa cctgctgctc gtcgccgcgc tcgtgagtgt gccgtccagg
     4201 cgctctactc ctggcagttg tcccagaacg acatcgctga tgttgaatac cagttcctgg
     4261 ctgaacagga tgtaaaagac gttgacgtcc tgtacttccg tgagctgctg gccggggtgg
     4321 cgactaatac cgcatacctc gacggactga tgaagccata cctgtcccgt ctgctggaag
     4381 aactgggaca ggtagaaaaa gcagtactgc gcattgcgct gtacgaactg tctaaacgta
     4441 gcgatgtgcc atacaaagtg gccattaacg aagcgatcga actggcgaaa tcgttcggcg
     4501 cagaagacag ccataagttc gtcaacggtg tactcgataa agcagcacct gtgattcgcc
     4561 ctaacaaaaa gtaatatcca ggccggtaga ttcacggaag accgttccat gatcgccggc
     4621 cttttctttt ttacctgctg aggcataacg tatggcatgt ggcgagttct ccctgattgc
     4681 ccgttatttt gaccgtgtaa gaagttctcg tcttgatgtc gaactgggca tcggcgacga
     4741 ttgcgcactt ctcaatatcc ccgagaaaca gaccctggcg atcagcactg atacgctggt
     4801 ggcgggcaac cacttcctcc ctgatatcga tcctgctgat ctggcgtata aagcactggc
     4861 ggtgaaccta agcgatctgg cagcgatggg ggccgatccg gcctggctga cgctggcatt
     4921 aaccttgccg gacgtagacg aagcgtggct tgagtccttc agcgacagtt tgtttgatct
     4981 tctcaattat tacgatatgc aactcattgg cggcgatacc acgcgtgggc cattatcaat
     5041 gacgttgggt atccacggct ttgttccgat gggacgagcc ttaacgcgct ctggggcgaa
     5101 accgggtgac tggatctatg tgaccggtac accgggcgat agcgccgccg ggctggcgat
     5161 tttgcaaaac cgtttgcagg ttgccgatgc taaagatgcg gactacttga tcaaacgtca
     5221 tctccgtcca tcgccgcgta ttttacaggg gcaggcactg cgcgatctag caaattcagc
     5281 tatcgatctc tctgacggtc tgatttccga tctcgggcat atcgtgaaag ccagcgactg
     5341 cggcgcacgt attgacctgg cattgctgcc gttttctgat gcgctttctc gccatgttga
     5401 accggaacag gcgctgcgct gggcgctctc tggcggtgaa gattacgagt tgtgtttcac
     5461 ggtgccggaa ctgaaccgtg gagcgctgga tgtggctctc ggacacctgg gcgtaccgtt
     5521 tacctgtatc gggcaaatga ccgccgatat cgaagggctt tgttttattc gtgacggtga
     5581 acctgttacg ttagactgga aaggatatga ccattttgcc acgccataaa gatgtcgcga
     5641 aaagtcgcct gaagatgagt aatccgtggc atctacttgc tgtcggattc ggaagtggat
     5701 taagcccgat cgttcctggg acgatgggct cgctggcagc gattccgttc tggtatctga
     5761 tgaccttttt gccctggcag ctctactcgc tggtggtgat gctggggatc tgtatcggcg
     5821 tctatctttg tcatcagacc gcaaaagata tgggcgtgca cgatcacggc agcattgttt
     5881 gggacgaatt tattggtatg tggatcacgc tcatggcgct gccgaccaat gactggcagt
     5941 gggttgccgc cgggtttgtg attttccgta ttctggatat gtggaaaccg tggccgatcc
     6001 gctggtttga tcgcaatgtg catggcggca tggggatcat gatagatgat attgtcgccg
     6061 gggtgatctc cgctggcatc ctgtacttta ttggtcatca ctggccgctg ggcattctgt
     6121 cgtagttgtg caccgatgcc tgatgtgacg cttgttgcgt ctcatcaggc ctggactctt
     6181 atttaaatcc tactaccgga tgcggtttat acggcgtttc cagttcggca atctgttccg
     6241 gcttcaaagt gatatccacc gcgttcaata gctcatcaag ctgttcttcc cgcgatgtac
     6301 cgataatcgg tgcggcaatg cccggtttac tcaacaacca agccagcgca acttgtgctc
     6361 gtgttgcacc gagttcttca ctgacgcccg ttaaccgctc tgcgatctgc gcgtcatttt
     6421 catcgctttc tttatagaga tttttcccca cctcatcaga caccagtcgt gcggtagttt
     6481 ctccccacgg acgcgtcagt cgcccccgcg ccagcgggct ccacggaatc accgccacgc
     6541 cctcctgata acacagtggc agcatctcgc gctcttcttc gcgataaatc agattgtagt
     6601 gatcctgcat actgacaaac tgcgcccagc cgtgctgttt ttggagttcc agtgcctgag
     6661 caaactgcga agcgtgcatt gatgacgcgc cgatataacg cgctttcccg gcttttacca
     6721 cgtcgttcag ggcttccagc gtctcttcga tcggcgtgtt gtaatcccag cgatgaattt
     6781 gcaggatatc gacataatcc atgccgagac gtcgcaggct gtcgtcgata gagcgcaaaa
     6841 tttgtgcacg ggataatcct tccggtaaat caccaacgcg atggaacact ttggtggcaa
     6901 cgaccacgtc ttcacgacgg gcgaaatccc gcagtgcgcg accaacgatc tcttcgctgc
     6961 taccatcgga atagctattg gcggtatcaa agaaatttat gccgccttcc agtgcgcgtt
     7021 taattatggg acggctgctc tcttccggca gtgtccatgc gtgattacca cgatctggct
     7081 cgccaaaggt catacagccg aggcaaagtc gggaaacgcg aaggtcggtt tttcctaagg
     7141 ggttgtattg catgctgcca ctcctgccat gaataatttc ttaagcatag caggagtgga
     7201 gtagggatta tgccagccag gccttgattt tggcttccat accggcggca tcgaggccga
     7261 gttcggcgcg catttcttcc tgcgttcctt gcggaataaa gaagtcaggc aggccaatgt
     7321 tcagcacggg gactggttta cgatgggcca ttagcacttc gttcactccg ctacctgcac
     7381 cgcccataat ggcgttttct tctacggtaa ccagtgcttc atgactggcg gccatttcca
     7441 gaattaacgc ttcatcaagc ggtttcacaa aacgcatatc gaccagcgtg gcgttcagcg
     7501 attcggcgac tttcgccgct tctggcatca gcgtaccaaa gttaaggatc gccagtttct
     7561 cgccacgacg cttcacaatg cctttgccaa ttggtagttt ttccagcggc gtcagttcca
     7621 cgccgaccgc gttgccacgc gggtagcgca ccgctgacgg gccatcgtta tagtgatagc
     7681 cggtatagag catctggcga cattcgtttt catcgctcgg ggtcataatg accatttccg
     7741 gtatgcagcg caggtaagag agatcaaaag caccctgatg ggtttgaccg tcagcaccaa
     7801 caatgcccgc gcggtcgatg gcgaacagga ccggaagctt ttgaattgcc acgtcatgca
     7861 gcacctgatc ataggcgcgt tgcaggaaag tggagtagat cgcgacaatg ggtttgtacc
     7921 caccaatcgc cagaccggcg gcaaaggtca ctgcgtgttg ctcggcaatt gccacgtcga
     7981 agtagcgatc cgggaattta cgagaaaact cgaccatgcc ggaaccttca cgcatcgccg
     8041 gagtaatcgc catcagcttg ttatctttcg ccgccgtttc gcacaaccag tcgccaaaga
     8101 tttttgaata gctcggtaaa ccgccgctac ttttcggcaa acaaccgctg gagggatcaa
     8161 atttaggcac ggcgtggaaa gtgattgggt ctttttctgc cggttcataa ccacgacctt
     8221 ttttggtcat gatatgcagg aactgcgggc ctttcaggtc acgcatgttc ttcagcgtgg
     8281 tgataagccc cagcacatcg tgaccgtcaa ccgggccgat gtagttaaag cccagctctt
     8341 caaacaacgt gccagggact accatgcctt taatatgttc ttcggtacgt ttgagcagct
     8401 ctttaatggg tggcacgcca gagaaaactt ttttcccgcc ttcgcgcagt gaagagtaaa
     8461 gcttaccgga aagcagctgc gccagatggt tgttgagcgc gccgacattt tcggaaatcg
     8521 acatttcgtt gtcgttgagg accaccagca tatcaggacg gatatcgccc gcgtgattca
     8581 tcgcttcaaa cgccatgcct gcggtaatcg cgccatcgcc gattacacag acggtacggc
     8641 gatttttgcc ttctttctcg gcagcaaccg caataccaat tccggcactg atggaggttg
     8701 atgaatgccc gacgcttaat acgtcatatt cgctttcgcc gcgccacggg aacgggtgca
     8761 ggccgccttt ctgacggatg gtgccgattt tgtcgcggcg tccggtcaaa attttatgcg
     8821 gataagcctg atgccccaca tcccaaatca attggtcaaa cggggtgttg tagacatagt
     8881 gcagcgccac ggtcagttcg accgtgccca gcccggaggc gaagtgcccg ctggaacggc
     8941 tcacgctgtc gagtaaatag cggcgcagtt cgtcgcagag tttcggtaaa ctctctttcg
     9001 gcaacagtcg taactcctgg gtggagtcga ccagtgccag ggtcgggtat ttggcaatat
     9061 caaaactcat caggggccta ttaatactta ttgtttattt attacgctgg atgatgtagt
     9121 ccgctagcgc ttccagtgcc gaggtatcga gtgactgttc agccagttgt ttcagcgact
     9181 gacgggcatc gtcgatcaga tcccgggctt tcttccgggc ttgctcaaga cccagaagtg
     9241 cagggtaggt acttttacca agttgctggt cggcaccctg gcgttttccc aacgttgcag
     9301 tatctcctac cacatccagg atgtcatcct gaacctggaa ggcaaggccg atgctctctg
     9361 cgtacttgtc gagtactggc agagcacgac gccctttatc tccggcgctt aatgcaccaa
     9421 ggcgaacggc ggcgcgaatc aatgcgccgg ttttatgacg atgaatacgc tcaagcgcgt
     9481 ccagaggtac gtgtttgcct tccgcgtcta aatctaatgc ctgaccaccg cacattccgg
     9541 caataccgct ggcgctcgcc agttcagaaa tcatcgaaat tctgtcgcga tccgacactt
     9601 ccggcatatc agcatcgctt aaaatcgaga acgccagcgt ttgtaaagcg tcgccagcga
     9661 gaatcgcgtt tgcttctcca aacttcacat ggcaggtcgg caaaccgcga cgcagatcgt
     9721 catcatccat cgccggtaaa tcatcatgaa ttaatgagta agcgtggata cactctacgg
     9781 cggcagcggg tgcgtccagc gtgtttgtgc taacgccaaa catatgaccg gtggcataaa
     9841 ccaggaaggg tcgcagacgc ttaccaccta ataatgcgcc atactgcatg gtttcgacca
     9901 cgggagtgtt ctgaaagggc agtggggcga taaaacggct cagcgcctgg ttggcctgct
     9961 taacgcaggc ttcgagttgc tgcggaaagt ccattactca ttgtccggtg taaaaggggt
    10021 tagagaggcg tcttcattgt cagacagcag aatttgtacg cgctgttcgg cttgttgtaa
    10081 tttggcctgc ccctgacgtg ccagctgcac gccgcgttcg aactcgttca gcgcctcttc
    10141 cagcggcagg tcgccacttt ccagacgggt tacaatctgt tccagctcgc tcagcgcctt
    10201 ttcaaagctg gcgggagcct catttttctt cggcataatg aatgtctgac tctcaatatt
    10261 tttcgccccg tcatggtaac ggactcaggg caaatagcaa ataacgcgca atggtaaggt
    10321 gatgtgcgca gcaaagcgat gttagtggta tacttccgcg cctggatgca gccgcaggtg
    10381 tgggctgctg tatttttccc tatacaagtc gcttaaggct tgccaacgaa ccattgccgc
    10441 catgaagttt atcattaaat tgttcccgga aatcaccatc aaaagccaat ctgtgcgctt
    10501 gcgctttata aaaatcctta ccgggaacat tcgtaacgtt ttaaagcact atgatgagac
    10561 gctcgctgtc gtccgccact gggataacat cgaagttcgc gcaaaagatg aaaaccagcg
    10621 tctggctatt cgcgacgccc tgacccgtat tccgggtatc caccatattc tcgaagtcga
    10681 agacgtgccg tttaccgaca tgcacgatat ttttgagaaa gcgttggttc agtatcgcga
    10741 tcagctggaa ggcaaaacct tctgcgtacg cgtgaagcgc cgtggcaaac atgattttag
    10801 ctcgattgat gtggaacgtt acgtcggcgg cggtttaaat cagcatattg agtccgcgcg
    10861 cgtgaagctg accaatccgg aagtgactgt ccatctggaa gtggaagacg atcgtctcct
    10921 gctgattaaa ggccgctacg aaggtattgg cggtttcccg atcggcaccc aggaagatgt
    10981 gctgtcgctc atttccggtg gtttcgactc cggtgtttcc agttatatgt tgatgcgtcg
    11041 cggctgccgc gtgcattact gtttctttaa ccttggcggc gcggcgcatg aaattggcgt
    11101 gcgtcaggtg gcgcattatc tgtggaaccg ttttggcagc tcccaccgcg tgcgttttgt
    11161 cgctattaat ttcgaaccgg tcgtcgggga aattctcgag aaaatcgacg acggtcagat
    11221 gggcgttatc ctcaaacgta tgatggtgcg tgccgcgtct aaagtggctg aacgttacgg
    11281 cgtacaggcg ctggtcaccg gcgaagcgct cggccaggtg tccagtcaga cgctgaccaa
    11341 cctgcgcctg attgataacg tctccgatac gctgatcctg cgtccgctga tttcttacga
    11401 caaagagcac atcatcaacc tggctcgcca gattggcacc gaagactttg ctcgcacgat
    11461 gccggaatat tgcggtgtta tctccaaaag cccgacggtg aaagcggtta agtcgaagat
    11521 tgaagcggaa gaagagaaat tcgacttcag cattctcgat aaagtggttg aagaagcgaa
    11581 taacgttgat atccgcgaaa tcgcccagca gaccgagcag gaagtggtgg aagtggaaac
    11641 cgtcaatggc ttcggctcga acgacgtgat cctcgatatc cgttctatcg atgaacagga
    11701 agataagcca ctgaaagtcg aagggattga tgtagtttct ctgccgttct ataaactgag
    11761 caccaagttt ggcgatctcg accagaacag aacctggcta ctgtggtgtg agcgcggggt
    11821 gatgagccgt ctgcaggcgc tctatctgcg cgagcagggc tttaacaatg tgaaggtata
    11881 tcgcccgtaa tttgtggttg taacgtcgca tctggtcaga tgcgacgctt accgcatccg
    11941 acactactcg taataattat aaatccctgc cgccatcacc agttgtgatg ccacttcatg
    12001 ggctttctcg cgcccaacca gcaggtcgat aattttcaga ccaaagtcga tagctgtccc
    12061 cggcccctgg ctggtcagca attttacccg tgcatcccag acgacgcgct tgtcctgcca
    12121 ttgttcagcg ggaattttgt ctttcagcgt cgggaagccg gtcatattac caatcgggaa
    12181 gatatcgtgc ggcaccagca cggtggctgg cgcggcgcaa atagccgcga cgatacgccc
    12241 ggaacggtgg aactgtttaa cggtttcaac cagcagagtg ctatcgcgaa aacactctgc
    12301 gcctttaatg ccaccaggca gtacgatcac gtcatattcg ccatcagcca cctcgaccag
    12361 cggcgcatcc gccagcagct tcacgccgcg cgagcaggta attgccaggt tgccatcgct
    12421 ggctacgctg gcagtggtga ctttgatacc gccgcgaacc aagaggtcga tcgtggtgac
    12481 ggcttcagtc tcttcactac caggggcgag gcaaaccagt gccgatgcgc tcatattcac
    12541 tctcctttct ttttaccatt tcaaacaggc gggtgttttc cggtacggca atcccatgcg
    12601 cgcgggcgcg gcgtaagaga aaaccattga tatagtcgat ttcggtgtgg cgcagcgcgc
    12661 ggatatcctg caacatcgac gagatatttt ccgctgtggc atcaatcacc tgcatcacgt
    12721 aatgacgcaa atcttccgct gaagtatgat gcccttcgcg ttcgatcact gccgcgactt
    12781 cttcgcatat ttgcataatt tcttgcggat gatgacgtaa ttcaccgttc gggcaattcc
    12841 agatggcggt cagtggatta atcacgcagt tgactgccag cttgcgccac agctcggcgc
    12901 gaatattgtt atgccaggca acgtcaggca acacggtttg taaaatatcc gccagataac
    12961 tgtaatcgcc atcctgttgc cgtgccggac caatatgcgt gataccgttt gccacatgaa
    13021 taatgacatt gccgtcgcgg cgggcggcat gggtggtggt gcccatcagt aatggctgct
    13081 gaatattttg caactcttcg atggtgccca tgccgttgtg aattaacagt attggcgtgg
    13141 ttacaggcag tgtggacgcg aggcttttga cggcatcgga aacctgccat gctttcagcg
    13201 tcaccaggag cagatcgctg gtggcgagaa aatcgggatc gttggcggtc agcgattcgt
    13261 taaatatcga accatctgtc tcaaccagat tcacactaca ataaggttgc ggtacgcgca
    13321 gccagccctg aacttcatga ccctgtttgc aaagtgctgt aagccataat tgccctaagg
    13381 caccgcatcc caatacggta attttcattg ttcctcctca cccgcaacca ctccgggtgt
    13441 tcaataaggc tatcccttaa ttgtgcatgc tgttgcgact atgcacaatt aagggatacg
    13501 tcctggtgca ggactgtcgg ttatttaact ttgcgggtat tatgcttcgc atcaaaaatg
    13561 aagggagagg aaaagatgcc atctttcgat attgtctctg aagttgatct tcaggaagca
    13621 cgtaacgcgg tcgataacgc gagccgcgaa gtggagtccc gttttgactt ccgtaacgtt
    13681 gaagcctcat ttgagctgaa cgacgccagc aaaaccatca aagtgttgag cgagtccgat
    13741 ttccaggtca atcagttgct ggatattctg cgtgccaagc tgctgaagcg cggcattgaa
    13801 ggcagttcac tggatgtacc ggaaaatatc gttcatagcg gtaaaacctg gtttgtggaa
    13861 gcgaaactga agcagggcat tgagagcgcg acccagaaaa aaatcgtcaa gatgatcaaa
    13921 gacagcaaac tgaaagtgca ggcgcaaatt cagggcgatg agatccgcgt gactggcaaa
    13981 tctcgtgatg atttgcaggc tgtcatggcg atggtgcgcg gtggcgatct gggtcagccg
    14041 ttccagttca aaaacttccg cgattaatcg cgacaacctg cgctttgttc atgtcagatg
    14101 cggcatgaac gcctggttcg gcctacaaag gcttgtaaat caggagctta gtagacctga
    14161 tgagcgtagc gcagcaggca atttcgcctc gcttttatgc ctggcgaatt gcctgttcaa
    14221 catcaaagcg attcgtcact ttgctgtcga ttttcacata agctgaatgt tcttcttctg
    14281 caatcaacac ttctttgatg ccttcagttt ctagcaaacg cacttttaac gcctcgtttg
    14341 cggcaatgtt cgccgggatt tcaatgcgca aactgctgac atacgccggt tctttcatgg
    14401 tactggcgac tgccagccac actgcggcca gcattgcgcc agcgagaaat acgccctgac
    14461 cgtcaaacat gccgtcaatc cagccgccca gtgaaccgcc aatcgccacg ccaagaaact
    14521 ggctggtgga gtaaacaccc atcgctgtac ctttgtaacc tgctggcgac tctttactga
    14581 taagtgaagg cagaagggct tccatcaaat taaacgctac aaagaaaagc tgcacgccga
    14641 ccaccagttg ccagaactgc gtttgcgcgt tccacaacac aatttccgca accacgatca
    14701 acccgacgca gaagacaaag acttgcttca ttttgcgctt aacttcagcg tagataatga
    14761 aaggcacgac cgagccaaag gcgattagca ttgtcgccag atagaccttc cagtgttcag
    14821 ccgccgggaa ccctgcatca gccagttgtc cgggcagggc aacaaacgtc gacatcagca
    14881 aaatatgcag acacataatg ccaaagttga gtttcagcag ccgcggttcc gccagcactt
    14941 tactgaaact gcctttcacc attccggact cacgattaag tacgtgagtg ctactgttgg
    15001 gcacaaccca aatggtcaac gcaatgccgg tcgttgccag aatagcgatc atccagaaca
    15061 gcgcgtgcag cccaagtttg tgagtgatga tcgggccaag caccatcgca atggcaaagg
    15121 taatgccaaa gctcacgccg ataaacgcca ttgctttggt gcggttttgt tcgcgcgtga
    15181 gatcggaaag cagcgccata acggcagcgg caatcgcacc ggagccttgt agcgcccggc
    15241 ccagaataat tccccagatg gagtcagaga gcgcagcgat aacgctaccg gcggcaaaca
    15301 ccgccagccc accgacaatt aatggtttgc gaccaatacg gtcggaaagc aggccaaacg
    15361 gaatctgaaa aacggcctga gtcagaccat aaataccaat ggcaataccg attaatgctt
    15421 cgctggcacc ttgcagagcc atgccatacg tggtcagaac cggcagaacc ataaacatgc
    15481 ccagcatgcg caacgagaat acggtcccta aaccccaggt cgcgcgcctc tcacctggcg
    15541 tcattttata atcgttcatt accacctctg ttttaaattc gcgactagtg taaagcggca
    15601 aacgaatggg gtaaacatgc ggatttttta gtaaatattt cgagagggat atgtttctaa
    15661 tgctaagaaa aaaggtgccg tagcaccttt ttaatagaga ggttttgtta ccacacagca
    15721 gccagcagcg tatgcgagtc cggtaccata aaatcaacgg acatcatcac cgagagggca
    15781 gtgatggcga tgatagagaa gccgaacagc ttgcgcgccc agattctgtc atcagcaact
    15841 ttataaccgc gcagagccat acctaaccac cagacgctaa ccgccgcggc gaccaccaga
    15901 tatttatatc cagcgtaacc gccaagagag agcatcagcg tggcaacggc aaaggcgatg
    15961 atatacagcg tgatgtgatt cttcgccacc gaaatgcctt ttaccactgg caataccgga
    16021 atgtttgccg cctggtaatc cttaaagcgg aaaatggcga tggcatagga gtgaggcatc
    16081 tgccacaggc tgaagatagc cagcaggatc gctgcgccgc tatcgaactc gccggttact
    16141 gcacagtagc caatcaccgg cggcgcagcg ccggagagcg aaccaatcaa tgtgccgtag
    16201 actgagtggc gtttcatgta caggctatag acgccgacat aaaccacaaa gcccatcacc
    16261 cccagccagc aggccagcgg attcgcgcca aaccacagca gcataaagcc agcaataccc
    16321 agcaaggtga cgtacaccag cgagacagca ggagagatca ggcctttaac cagcacccga
    16381 ttcttcgtcc tttccatctt tctgtcgata tccctgtcga tgtagttgtt aaacacacaa
    16441 cccgacgcca caaccagtga caccccaacc agcgtgtaga taaacagggg ataatcaatg
    16501 ctgccctttg aggccagcag gaatccccca atcaccgaga tcaggttgcc aaagatgatg
    16561 cctggtttcg ttacttgcag gtattgctta aacatcataa ccgccgctct tagtgcatca
    16621 tcatgttgta gttgaggttc cacataatcc agatggagcc tacaaccagg atagcgatga
    16681 ttagcacggt gaagacaaac gccgtcatgt tccagccttc atctgatttg gtattcatgt
    16741 gcaggaagca caccagatgc accagaacct gtaccactgc cattgcccgg attgttccca
    16801 gaattacggc cggagaggca gcccctgtca tcaccatcca gaacggaatc accgtcagaa
    16861 tgatcgacag gataaagcct gtcatgtagg tttttacgct gccatgggac gcgccgctgt
    16921 gatcggtaga atgactcatt acatcgcccc catcagataa acaacagtga acacacagat
    16981 ccaaaccaca tccaggaagt gccagaacag gctcaggcac atgatgcggg tacggttagt
    17041 gctggtcagg ccgcgacgag cgatttgtac catcagcacc gccatccaga taagaccgga
    17101 agtgacgtgc agaccgtgcg tgccgaccag cgcaaagaac gctgacagga agccgctgcg
    17161 atccggaccc atgccgttaa caatcaggtg atggaattcg tagatttcca tcccgataaa
    17221 tccggcacca aacaaacagg tcaacgccag ccaggagata acctggcttt tgttgttttt
    17281 gtacatggcg atagccgcca tgccgtaggt gatggagctg aacaacagca agaaagtttc
    17341 aaccagaacg aacggcagtt cgaaaatgtc cttacctgtc gggccgcctg cggtgccgtt
    17401 caccagaacg gcataggtag caaacaagat tgagaacaga atgcagtcgc tcatcaggta
    17461 gatccaaaat ccgaagattt tggttccgcc tgcatcgtgg tgcccgtgtt cgtgcgcgtg
    17521 ggcagtcgcg tgcgtcaaag tatcagttgc catttttcag ccctgcctta gtaatctcat
    17581 cgaaatgctg gttttccagt ttttcgattt ctgccaccgg cacgtagtaa tccacgtcct
    17641 cgtcgaagct tttcacgatc caggtgatga tcatgcctgc gaagccaaca atcgccagcc
    17701 accagatatg ccagatcatg gcgaaaccga agatggtgga gaaagctgca atgacgatac
    17761 ctgcaccgct gtttttcggc atatgaattt cttcatagtg gtcaggcttt ttatacgctt
    17821 cgcctttctc tttcatttcc cagaatgcat cacgctcgtg aacgtgcggc acaacggcaa
    17881 agttatagaa cggaggcggg gaagaggttg cccactccag cgtacggcca ccccacgggt
    17941 cgccagtcag gtcacggttc tggtcgcggt cgcgaataga aacgtacatc tgaataacga
    18001 ggcagagaat acccagcgca atcagtactg caccgctagc tgcaatcatc agcatggtgt
    18061 ggaactgcgg gtcaatctgc tggctcaaac gacgggtcat gcccatgaag cccagcgcat
    18121 acagcggcat aaaggcaacg aagaagccga tgatccagaa ccagaacgcg cgtttacccc
    18181 aggtttcatt cagtttgaaa ccgaacgctt taggccacca gtaggtcatc cctgcgaagc
    18241 agccgaagac cacgccgccg atgataacgt tatggaagtg cgcaatcagg aacaggctgt
    18301 tatgcagaac gaagtccgcg cccggtactg ccagcagcac gccagtcatc ccgcccaccg
    18361 agaaagtgac gataaaaccg atggtccaca gcatcgcaga atggaacacg atacggccct
    18421 gatacatggt gaacagccag ttgaaggtct tcaccccggt cgggatggcg ataatcattg
    18481 tggtgatacc aaagaaggcg tttacgttcg cgcccgcacc catcgtaaag aagtggtgca
    18541 gccaaacgat gaacgacagc acggtgatac agacggttgc ccataccagc gaggtataac
    18601 caaacagacg tttacgcgag aaggttgccg caatttcgga gaacacaccg aaaacaggct
    18661 ggatcaggat gtaaacttcc gggtggcccc aggcccaaat caggttgatg tacatcatca
    18721 tgttgccacc catatcgttg gtaaagaaat gggtgcccag atagcgatcc agggtcaaca
    18781 acgcgacggt aaccgtcaga attgggaagg aagcaataat cagtacgttc gcgcacagtg
    18841 atgcccaggt aaatactggc atcttgaaca tggtcatgcc cggtgcgcgc atcttcagaa
    18901 tggtaacgaa gaagttgata ccggtaagcg tcgtacctat accggatagc tggagactcc
    18961 atatccagta atcaacaccg actcccggac tgtactctat tcccgatagc ggtggatagg
    19021 ccagccagcc ggtctgcgca aattcgccca cgccgagaga aacgttaacc agaatcacac
    19081 caacaacagt aaaccagaag cttaagttgt tgaggaacgg gaacgcaacg tcacgcgcgc
    19141 cgatctgcag cggaaccacc aggttcatca gaccgataac gaaaggcatc gccacgaaga
    19201 agatcataat cacgccgtgc gcggtgaaga tctgatcgta gtggtgaggt ggcaggaagc
    19261 ccgcttcgcc cgccgaggca agagcctgct ggctacgcat cataatggcg tcagcaaaac
    19321 cacgcagcaa catcacaatc gccacgatga tatacatgat accgaggcgt ttatggtcga
    19381 cggaggtcag ccactctttc cacaggtagg tccacttacc gaagtaagtg atcaggccaa
    19441 cgagcgccag acctcccaaa ataatgccag cgatcgtaac catgacgata ggttcatgga
    19501 acgggactgc atcaagtgat aattttccga acatctttat tcttcctcaa cccctttaat
    19561 gggcggattc cgcgtggctc atgtccatgc tttccatacc ttcgtgtgcg ctgtgctcac
    19621 cttctggctg ggtcatgtcc atgctcttac cgtgagccat aaacttgtta atcacatcag
    19681 caaacaagtc tggtttcacg ttggagaaat attccacctg gttgtattcg ctaggcgcgg
    19741 ccagtttttc gaacgcagcc atgtcagaca tggtgttcgg cgactgcttc gcttttgcga
    19801 cccactggtc gaattcggcg cgatccggtg ttgcaatagc tttgaacttc atgcctgaga
    19861 agcccgggcc gctgtagctg gcggagatac cgtcataagt accgggttcg ttggcgatca
    19921 gatgcaggcg agtctgcata ccagccatgg cataaatctg gctacccaga cgcggaatga
    19981 agaaggagtt catcacggag ttggaggtca ctttgaagta caccggagtg ttcgccggga
    20041 aagcgatttc attcacggta gcaatgccct gttccgggta gatgaagaac catttccagt
    20101 ccatggaaac cacttcgatg gtaatgggct tctcgtcgtg tgccagcggc ttgctaggct
    20161 caagagcgtg agtggttttc caggtcagta ccgcaaggaa gatgatgatt aagataggta
    20221 ccgtccagac cacagcttcc actttattgg agtgtgacca gttcgggctg tacttagcat
    20281 ctttattgct cgcacgatac ttccaggcga aaccaacagc catcaagatt gcgggaataa
    20341 cgacaatcaa catcaggcca aatgccgtca gtatcagtga acgttgctcc agaccaatct
    20401 gtcctttggg atctaacagc gcagaattac agccactgag caatacagtg cctgcaaata
    20461 atgacaacca tcccaaactt ttattgtatt tcctgagtct catttaacga cctcaattcc
    20521 acgggatctg gtggcgttta aagtgtgtgg gcgttttacg ggaaggttac attactgtaa
    20581 acatgattaa attcctgtta cttggatttg gctgtcaggt cacatatgtt gcaaaacata
    20641 tcaagttgat tttaagaagc tgttgcaaaa gggcgttata acgaaagggg agtgcagaag
    20701 gagtttggac gggcaattgg tataaccaat ctggaataaa ataattgttt aacaaataat
    20761 tatcattatg gtgacaattg ggtgggggga aaataaagac tcgttagctg aatcgtgtaa
    20821 gaaaaaatag aattcataaa ttgcgtcaat aatttccaaa cgctaagccg cacaaaagaa
    20881 caaatattat taagcgatac tgatgtttat ttagccgtaa taattacggc gagtgattac
    20941 tacagctaaa taatatttac agattacgtc agatgcgttt ttcgtagagc cagataatcc
    21001 agcaaaccac caagcacgac gccagaaagg gcgactaaaa ccccgacttc cagcagagca
    21061 ggcaggaaag agaagtgcgt caaatccagc gcgtccatcg tcaacagcag taaccacacg
    21121 gccaacaggc tgacgcccgc cgccagtgtc cacatggcaa aggcataacc tgccggatat
    21181 tcggtacggg agataaagtt gtcatttact cgtgtatatt caagcgtctg gcggcaaacc
    21241 agcagcaaaa taagccccgg tacggcagcg gcgacggaga atagatagaa tgtcgaccag
    21301 ccgtgtgctt caacaaacca acccgccacg gggccgacat aaactcgtcc tacagcggaa
    21361 agcgctgaga gcagggcaaa ttgagtagcg gaaaatgact tattacacag cgtcattaac
    21421 agcgcgacaa aggctgatgt gcccatcccg ccacagaggt tttcgaaaaa gacggctgcg
    21481 cccatgctgt agagatgctt atcagtaatc gacagcagcc agtaaccagc gttagacgca
    21541 ccttgtaaaa tgccgaaaat cagcagcgcc cggaacagcg acaggcgctg catcaaaatc
    21601 ccaccgtaca atgcgcccac aatggtcgcc agtaagccaa gcgttttgtt aaccacgcct
    21661 acttcacccg catcaaaccc gacgccgcga atcaaaaacg tggttgtcag gctcatggcg
    21721 aatgcgtcgc ccagcttata cagcacgata agaagcaaaa taagccaggc attattgcga
    21781 ccaaagaaat ctcgcagagg tgcaacaacc gcttgttcca gcgtttttgg cacaggaatg
    21841 gtgtcggtcg gttctggtgc aagcaacgtc gcgataatac aagggatcaa cagcgccgcc
    21901 atcaaccagt acatgccctg ccagcccagc catttatctg ccagccacag ggctaagccg
    21961 ccggaaacca gcatccctaa acggtaaccc agcacgctga ttgccgcgcc cgcaccacgt
    22021 tcttctgccg ggagcacatc ggttttccac gcatcgaaga caatatcctg ggaggccgag
    22081 caaaaagcga tcaccaccgc cagtgccgcc atccagcgga gttgggtgcc aggttcgaga
    22141 aaacccatcg ccgcaatggc gactaataac aggatttgcg tggcgagcag ccaaccgcgc
    22201 cgccgcccaa aaaatggggg cgtgtagcgg tccatcagcg gtgaccagag gaatttaaaa
    22261 acgtaagcct ggcctaccag agagaagaaa ccaatggttt tgagatcaat attctcgacc
    22321 gtcatccagg cctgtaaggt accggatgtc agggcgagcg gtagcccgga agcaaaaccc
    22381 aggatcagca atatggctga acgcggctgt tgaaaaatac gtaaatattg actggacatg
    22441 ggcgtctaca ggcccggttt gcaccgggcc agagggcaga aattaacgcg cgttctgctt
    22501 gatgaattcg tgaatgctgg tgtcctgaga catatcagcg atggtatcgg tcagcacact
    22561 gttaaccgca tcggcgatat ttttgttgga ggcctggaac gcaccttcaa cgttgtagct
    22621 ggcacgatag tttttggtta ttttgttgcc attctgcgcg gtagcgatga tggcgatatc
    22681 cgctttggta gcgatgttgt agcgcacgtt gccctgggac acgtcagcat acagttggct
    22741 aacgatgatt tgcagattaa ccgggccatt cggaccaacc atgtaaccac gcgcggtcat
    22801 ctgtttttcc agcacttctt gcagcaggaa acgcagatcg cgggaggcgg tcagggtaac
    22861 gatttgatta tcgcgggtga cttttgccag cgcctgatcg gtacgctgat cggcaccatt
    22921 aatgcttacg gtgacgccca tcaggcttgg atcctgctgt ggcagtgtaa tcgtcgggga
    22981 aatttcaata gttgttggcg gttttgcgca tcctgcaagc ataaacagag caactaacgg
    23041 gaagaggatt tttttgaaca tgttcgggct ctcagagact cttaagcgtg tttggtaaaa
    23101 attcccgcca tcataacatt gccaacggcg aggggaagtg ggtaaggcat gtaaattcat
    23161 catgttgacg aaataatcac tcctggtaaa agaaacgctg atgcgaggcc tgtgtttcaa
    23221 tctttaaatc agtaaacttc atacgcttga cggaaaaacc aggacgaaac ctaaatattt
    23281 gttgttaagc tgcaatggaa acggtaaaag cggctagtat ttaaagggat ggatgacatc
    23341 tcagcgttgt cggaggagat atttcatgat gatacgtgag cggatagaag aaaaattaag
    23401 ggcggcgttc caacccgtat tcctcgaagt agtggatgaa agctatcgtc acaatgtccc
    23461 agccggctct gaaagccatt ttaaagttgt gctggtcagc gatcgtttta cgggtgaacg
    23521 ttttctgaat cgtcatcgaa tgatttacag tactttagcg gaggaactct ctactaccgt
    23581 tcatgcgctg gctctgcata cttacactat taaggagtgg gaagggttgc aggacaccgt
    23641 ctttgcctct cctccctgtc gtggagcagg aagcatcgcg taaaaacgca tttgcaactg
    23701 tcggcgcttt ttcagtatgt tgctaaagat tttatgaaaa acggcctgcg ggccgttttg
    23761 ttttgtctgg attttgcgct ttttgcccag cattcagacg aaaattgccc gggaattgtg
    23821 aaaaaatacg cgacagcgcg caataaccgt tctcgactca taaaagtgat gccgctataa
    23881 tgccgcgtcc tatttgaatg ctttcgggat gattctggta acagggaatg tgattgatta
    23941 taagaacatc ccggttccgc gaagccaaca acctgtgctt gcggggtaag agttgaccga
    24001 gcactgtgat tttttgaggt aacaagatgc aagtttcagt tgaaaccact caaggccttg
    24061 gccgccgtgt aacgattact atcgctgctg acagcatcga gaccgctgtt aaaagcgagc
    24121 tggtcaacgt tgcgaaaaaa gtacgtattg acggcttccg caaaggcaaa gtgccaatga
    24181 atatcgttgc tcagcgttat ggcgcgtctg tacgccagga cgttctgggt gacctgatga
    24241 gccgtaactt cattgacgcc atcattaaag aaaaaatcaa tccggctggc gcaccgactt
    24301 atgttccggg cgaatacaag ctgggtgaag acttcactta ctctgtagag tttgaagttt
    24361 atccggaagt tgaactgcag ggtctggaag cgatcgaagt tgaaaaaccg atcgttgaag
    24421 tgaccgacgc tgacgttgac ggcatgctgg atactctgcg taaacagcag gcgacctgga
    24481 aagaaaaaga cggcgctgtt gaagcagaag accgcgtaac catcgacttc accggttctg
    24541 tagacagcga agagttcgaa ggcggtaaag cgtctgattt cgtactggcg atgggccagg
    24601 gtcgtatgat cccgggcttt gaagacggta tcaaaggcca caaagctggc gaagagttca
    24661 ccatcgacgt gaccttcccg gaagaatacc acgcagaaaa cctgaaaggt aaagcagcga
    24721 aattcgctat caacctgaag aaagttgaag agcgtgaact gccggaactg actgcagaat
    24781 tcatcaaacg tttcggcgtt gaagatggtt ccgtagaagg tctgcgcgct gaagtgcgta
    24841 aaaacatgga gcgcgagctg aagagcgcca tccgtaaccg cgttaagtct caggcgatcg
    24901 aaggtctggt aaaagctaac gacatcgacg taccggctgc gctgatcgac agcgaaatcg
    24961 acgttctgcg tcgccaggct gcacagcgtt tcggtggcaa cgaaaaacaa gctctggaac
    25021 tgccgcgcga actgttcgaa gaacaggcta aacgccgcgt agttgttggc ctgctgctgg
    25081 gcgaagttat ccgcaccaac gagctgaaag ctgacgaaga gcgcgtgaaa ggcctgatcg
    25141 aagagatggc ttctgcgtac gaagatccga aagaagttat cgagttctac agcaaaaaca
    25201 aagaactgat ggacaacatg cgcaatgttg ctctggaaga acaggctgtt gaagctgtac
    25261 tggcgaaagc gaaagtgact gaaaaagaaa ccactttcaa cgagctgatg aaccagcagg
    25321 cgtaatttac gcagcataac gcgctaaatt cgcacaaagg cccgtcaccg ccaggtggtg
    25381 ggcttttttt tgtcatgaat tttgcatgga accgtgcgaa aagcctcttt cggtgttagc
    25441 gtaacaacaa aagattgtta tgcttgaaat atggtgatgc cgtacccata acacagggac
    25501 tagctgataa tccgtccata aggttacaat cggtacagca ggttttttca attttatcca
    25561 ggagacggaa atgtcataca gcggcgaacg agataacttt gcaccccata tggcgctggt
    25621 gccgatggtc attgaacaga cctcacgcgg tgagcgctct tttgatatct attctcgtct
    25681 acttaaggaa cgcgtcattt ttctgactgg ccaggttgaa gaccacatgg ctaacctgat
    25741 tgtggcgcag atgctgttcc tggaagcgga aaacccagaa aaagatatct atctgtacat
    25801 taactcccca ggcggggtga tcactgccgg gatgtctatc tatgacacca tgcagtttat
    25861 caagcctgat gtcagcacca tctgtatggg ccaggcggcc tcgatgggcg ctttcttgct
    25921 gaccgcaggg gcaaaaggta aacgtttttg cctgccgaat tcgcgcgtga tgattcacca
    25981 accgttgggc ggctaccagg gccaggcgac cgatatcgaa attcatgccc gtgaaattct
    26041 gaaagttaaa gggcgcatga atgaacttat ggcgcttcat acgggtcaat cattagaaca
    26101 gattgaacgt gataccgagc gcgatcgctt cctttccgcc cctgaagcgg tggaatacgg
    26161 tctggtcgat tcgattctga cccatcgtaa ttgatgccag aggcgcaact gtgccgctat
    26221 acttatccag ggcggcacaa cgctgtaagc ggcttgcgcc tgagaatggc atttgcgtcg
    26281 tcgtgtgcgg cacaaagaac aaagaagagg ttttgaccca tgacagataa acgcaaagat
    26341 ggctcaggca aattgctgta ttgctctttt tgcggcaaaa gccagcatga agtgcgcaag
    26401 ctgattgccg gtccatccgt gtatatctgc gacgaatgtg ttgatttatg taacgacatc
    26461 attcgcgaag agattaaaga agttgcaccg catcgtgaac gcagtgcgct accgacgccg
    26521 catgaaattc gcaaccacct ggacgattac gttatcggcc aggaacaggc gaaaaaagtg
    26581 ctggcggtcg cggtatacaa ccattacaaa cgtctgcgca acggagatac cagcaatggt
    26641 gtcgagttgg gcaaaagtaa cattctgctg atcggtccga ccggttccgg taaaacgctg
    26701 ctggctgaaa cgctggcgcg cctgctggat gttccgttca ccatggccga cgcgactaca
    26761 ctgaccgaag ccggttatgt gggtgaagac gttgaaaaca tcattcagaa gctgttgcag
    26821 aaatgcgact acgatgtcca gaaagcacag cgtggtattg tctacatcga tgaaatcgac
    26881 aagatttctc gtaagtcgga caacccgtct attacccgtg acgtttccgg tgaaggcgta
    26941 cagcaggcac tgttgaaact gatcgaaggt actgttgctg ccgttccacc gcagggcggg
    27001 cgtaagcatc cgcagcagga atttttgcag gttgatacct ccaagatcct gtttatttgt
    27061 ggcggtgcgt ttgccggtct ggataaagtg atttcccacc gtgtagaaac cggctccggc
    27121 attggttttg gcgcgacggt aaaagcgaag tccgacaaag caagcgaagg cgagctgctg
    27181 gcgcaggttg aaccggaaga tctgatcaag tttggtctta tccctgagtt tattggtcgt
    27241 ctgccggttg tcgcaacgtt gaatgaactg agcgaagaag ctctgattca gatcctcaaa
    27301 gagccgaaaa acgccctgac caagcagtat caggcgctgt ttaatctgga aggcgtggat
    27361 ctggaattcc gtgacgaggc gctggatgct atcgctaaga aagcgatggc gcgtaaaacc
    27421 ggtgcccgtg gcctgcgttc catcgtagaa gccgcactgc tcgataccat gtacgatctg
    27481 ccgtccatgg aagatgtcga aaaagtggtt atcgacgagt cggtaattga tggtcaaagc
    27541 aaaccgttgc tgatttatgg taagccggaa gcgcaacagg catctggtga ataattaacc
    27601 attcccatac aattagttaa ccaaaaaggg gggattttat ctccccttta atttttcctc
    27661 tattctcggc gttgaatgtg ggggaaacat ccccatatac tgacgtacat gttaatagat
    27721 ggcgtgaagc acagtcgtgt catctgatta cctggcggaa attaaactaa gagagagctc
    27781 tatgaatcct gagcgttctg aacgcattga aatccccgta ttgccgctgc gcgatgtggt
    27841 ggtttatccg cacatggtca tccccttatt tgtcgggcgg gaaaaatcta tccgttgtct
    27901 ggaagcggcg atggaccatg ataaaaaaat tatgctggtc gcgcagaaag aagcttcaac
    27961 ggatgagccg ggtgtaaacg atcttttcac cgtcgggacc gtggcctcta tattgcagat
    28021 gctgaaactg cctgacggca ccgtcaaagt gctggtcgag gggttacagc gcgcgcgtat
    28081 ttctgcgctc tctgacaatg gcgaacactt ttctgcgaag gcggagtatc tggagtcgcc
    28141 gaccattgat gagcgggaac aggaagtgct ggtgcgtact gcaatcagcc agttcgaagg
    28201 ctacatcaag ctgaacaaaa aaatcccacc agaagtgctg acgtcgctga atagcatcga
    28261 cgatccggcg cgtctggcgg ataccattgc tgcacatatg ccactgaaac tggctgacaa
    28321 acagtccgtt ctggagatgt ccgacgttaa cgaacgtctg gaatatctga tggcaatgat
    28381 ggaatcggaa atcgatctgc tgcaggttga gaaacgcatt cgcaaccgcg ttaaaaagca
    28441 gatggagaaa tcccagcgtg agtactatct gaacgagcaa atgaaagcta ttcagaaaga
    28501 actcggtgaa atggacgacg cgccggacga aaacgaagcc ctgaagcgca aaatcgacgc
    28561 ggcgaagatg ccgaaagagg caaaagagaa agcggaagca gagttgcaga agctgaaaat
    28621 gatgtctccg atgtcggcag aagcgaccgt agtgcgtggt tatatcgact ggatggtaca
    28681 ggtaccgtgg aatgcgcgca gcaaggtcaa aaaagacctg cgtcaggcgc aggaaatcct
    28741 tgataccgac cattatggtc tggagcgcgt gaaagatcgc atccttgagt accttgcggt
    28801 tcaaagccgt gtcaacaaaa tcaagggacc gatcctctgc ctggtagggc cgccgggggt
    28861 aggtaaaacc tctcttggtc agtccattgc caaagccacc gggcgtaaat atgtccgtat
    28921 ggcgctgggc ggcgtgcgtg atgaagcgga aatccgtggt caccgccgta cttacatcgg
    28981 ttctatgccg ggtaaactga tccagaaaat ggcgaaagtg ggcgtgaaaa acccgctgtt
    29041 cctgctcgat gagatcgaca aaatgtcttc tgacatgcga ggcgatccgg cctctgcact
    29101 gcttgaagtg ctggatccag agcagaacgt agcgttcagc gaccactacc tggaagtgga
    29161 ttacgatctc agcgacgtga tgtttgtcgc gacgtcgaac tccatgaaca ttccggcacc
    29221 gctgctggat cgtatggaag tgattcgcct ctccggttat accgaagatg aaaaactgaa
    29281 catcgccaaa cgtcacctgc tgccgaagca gattgaacgt aatgcactga aaaaaggtga
    29341 gctgaccgtc gacgatagcg ccattatcgg cattattcgt tactacaccc gtgaggcggg
    29401 cgtgcgtggt ctggagcgtg aaatctccaa actgtgccgc aaagcggtta agcagttact
    29461 gctcgataag tcattaaaac atatcgaaat taacggcgat aacctgcatg actacctcgg
    29521 tgttcagcgt ttcgactatg gtcgcgctga taacgaaaac tgtgtcggtc aggtaaccgg
    29581 tctggcgtgg acggaagtgg gcggtgactt gctgaccatt gaaaccgcat gtgttccggg
    29641 taaaggcaaa ctgacctata ccggttcgct cggcgaagtg atgcaggagt ctattcaggc
    29701 ggcgttaacg gtggttcgtg cgcgtgcgga aaaactgggg atcaaccctg atttttacga
    29761 aaaaagtgac atccacgtcc acgtaccgga aggtgcgacg ccgaaagatg gtccgagtgc
    29821 cggtattgct atgtgcaccg cgctggtttc ttgcctgacc ggtaacccgg ttcgtgccga
    29881 tgtggcaatg accggtgaga tcactctgcg tggtcaggta ctgccgatcg gtggtttgaa
    29941 agaaaaactc ctggcagcgc atcgcggcgg gattaaaaca gtgctaattc cgttcgaaaa
    30001 taaacgcgat ctggaagaga ttcctgacaa cgtaattgcc gatctggaca ttcatcctgt
    30061 gaagcgcatt gaggaagttc tgactctggc gctgcaaaat gaaccgtctg gcatgcaggt
    30121 tgtgactgca aaatagtgac ctcgcgcaaa atgcactaat aaaaacaggg ctggcaggct
    30181 aattcgggct tgccagcctt tttttgtctc gctaagttag atggcggatc gggcttgccc
    30241 ttattaaggg gtgttgtaag gggatggctg gcctgatata actgctgcgc gttcgtacct
    30301 tgaaggattc aagtgcgata taaattataa agaggaagag aagagtgaat aaatctcaat
    30361 tgatcgacaa gattgctgca ggggctgata tctctaaagc tgcggctggc cgtgcgttag
    30421 atgctattat tgcttccgta actgaatctc tgaaagaagg ggatgatgta gcactggtag
    30481 gttttggtac ttttgccgtt aaagagcgtg ctgcccgtac tggccgcaac ccgcagaccg
    30541 gtaaagagat caccatcgct gctgctaaag taccgagctt ccgtgcaggt aaagcactga
    30601 aagacgcggt aaactaagcg ttgtccccgg tggggatgtg acgaagttca agggcgcatc
    30661 tactgatgtg ccttttttat ttgtattcgg tgactttctg cgtcttgtgg gctgacaatt
    30721 gcccccgttt cttgtcacaa taggcctttg cgcgcatcga tacgttgcgt gaggtacaca
    30781 gtcatctaca gcggagtgtt gttacaccat gatggacagc ttacgcacgg ctgcaaacag
    30841 tctcgtgctc aagattattt tcggtatcat tatcgtgtcg ttcatattga ccggcgtgag
    30901 tggttacctg attggcggag gcaataacta cgccgcaaaa gtgaatgacc aggaaatcag
    30961 ccgtgggcag ttcgagaacg cctttaacag cgagcgtaat cgcatgcagc aacagctggg
    31021 cgatcaatac tccgagctgg cagcgaatga aggctatatg aaaaccctgc gtcaacaggt
    31081 gctgaatcgt ctgatcgacg aggcgctgtt ggatcagtac gctcgtgagc tgaaactggg
    31141 tatcagtgat gagcaggtta aacaggcgat tttcgcgacc ccagccttcc tggttgatgg
    31201 caaatttgat aacagccgct ataacggtat cctcaaccag atggggatga ccgccgatca
    31261 gtacgcccag gcgctgcgta accagctcac tacccaacag ctgattaacg gtgttgccgg
    31321 taccgatttt atgctgaaag gtgaaaccga cgagctggcg gcactggtcg cgcaacaacg
    31381 cgtggtgcgt gaggcgacta tcgatgttaa cgcgctggcg gcgaagcagc ctgtgaccga
    31441 acaggagatt gccagctact acgaacaaaa caaaaacaat ttcatgacgc cggaacaatt
    31501 ccgcgtgagt tacatcaagc tggatgccgc aacgatgcag caaccggtta gcgatgcgga
    31561 tatccagagc tactacgatc agcatcagga tcaattcacc cagccgcagc gtacccgcta
    31621 cagcatcatc cagaccaaaa ctgaagatga agcgaaagcg gtacttgatg agctgaataa
    31681 aggcggtgat tttgctgcat tagccaaaga aaaatctgcc gatattatct ctgcccgtaa
    31741 cggcggcgat atgggttggt tagaagatgc cactatcccc gacgaactga aaaatgctgg
    31801 tctaaaagaa aaaggccaac tgtctggtgt catcaaatct tcggtcggtt tcctgattgt
    31861 acgtctggac gacattcatc cagcgaaagt gaaatcgtta gacgaagtac gtgacgacat
    31921 tgcggcgaaa gtgaaacacg aaaaagccct cgatgcgtac tatgcgctgc agcagaaagt
    31981 gagcgatgcg gcaagcaacg acaccgagtc tctggccggt gcagagcaag ctgccggcgt
    32041 taaagccact cagacgggtt ggttcagcaa agataacctg ccggaagagt tgaacttcaa
    32101 gccggttgcc gacgctatct ttaacggcgg tctggtaggt gaaaacggcg cgccgggcat
    32161 caactctgac atcatcaccg tagacggcga ccgtgcattc gtgctgcgca tcagcgagca
    32221 caaaccggaa gcggtgaaac cgttggcaga tgttcaggaa caagttaagg cactggttca
    32281 gcacaacaaa gctgaacaac aggcgaaagt ggatgctgag aaactgctgg ttgatttgaa
    32341 agccggcaaa ggtgcggaag ctatgcaggc tgccggtctg aaatttggcg agccgaaaac
    32401 cttaagccgt tccggtcgtg acccgattag ccaggcggcg tttgcactgc cactgccagc
    32461 gaaagacaaa ccgagctacg gtatggcgac cgatatgcaa ggtaatgtgg ttctgctggc
    32521 gctggatgaa gtgaaacaag gttcaatgcc ggaagatcag aaaaaagcga tggtgcaggg
    32581 tatcacccag aacaacgcac aaatcgtctt tgaagctctg atgagtaacc tgcgtaaaga
    32641 ggcgaaaatc aaaattggcg atgcgctgga acagcaataa tcctgaagac gtctcgcaaa
    32701 aaaatgcgtt gcagctgtaa caagaaaagg tcgctttcgc ggccttttcc atttctgaac
    32761 attgccattt gtttactgtt ttcactgccg ttaaggtgat tccactgtta acaaacaagg
    32821 agaaaacagt atgaaacacg gaattaaagc actgctcatt accctgtccc tggcctgtgc
    32881 cggaatgtct catagcgcgc tggcggcagc ttctgtggcg aaaccgacgg cggtagaaac
    32941 caaagcggaa gctcctgcag cacaaagtaa agcagcagta ccggcgaaag ccagtgacga
    33001 agaaggcacc cgggtcagca ttaataatgc cagcgcggaa gagctagccc gcgcgatgaa
    33061 tggcgttggc ctgaagaaag cgcaggcgat tgtcagttat cgcgaagagt acggtccgtt
    33121 taaaacagtg gaggatctaa agcaggtgcc ggggatgggc aattcgctgg tggaacgtaa
    33181 tctggcggta ttaaccctgt aattaatttg catagtggca attttttgcc agactgaaga
    33241 ggtcatacca gttatgacct ctgtacttat aacaacaacg taaggttatt gcgctatgca
    33301 aacacaaatc aaagttcgtg gatatcatct cgacgtttac cagcacgtca acaacgcccg
    33361 ctaccttgaa tttctcgaag aagcccgctg ggatgggttg gaaaatagcg acagttttca
    33421 gtggatgacg gcccataaca tcgccttcgt cgtggtcaat atcaatatta actatcgtcg
    33481 cccagcggta ttaagtgacc tgttaactat taccagtcag ttgcagcaat taaacggtaa
    33541 aagcggcatc ttaagccagg tcattacact ggagccggaa gggcaggtgg tagcggatgc
    33601 gcttattacg tttgtttgta ttgatcttaa aacgcagaaa gcattagctc tggaagggga
    33661 attgcgcgaa aagctggagc agatggttaa gtaaacgttt tgtggtgccg gatgctcaag
    33721 ccgcatccgg cgacacccgg aataattacc tcaacccggt tttctgcttc atcgctgcca
    33781 tcaccgtcgg tttatcggcc agataatgat tcaaaccgtt ggcgcgtaaa ttacatgccg
    33841 cacaatgacc gcaaccgtcg cctttaatgc cgttatagca ggtcaacgtt tcgttacgga
    33901 ctaaatccag tttgccgtaa taatctgcca gcgcccaggt ttccgcttta tcaatccaca
    33961 tcagcggcgt ttcaaaacga atatctttcg ccatgcccaa actgacggca tggtttagtg
    34021 ctttcacaaa ctcatcgcgg caatccgggt agccggagaa atccgtttca cagacgccgg
    34081 taattacggc ttctgctttt acctgatacg catatattgc cgccagcgtc aggaacaaaa
    34141 tattacgccc tgggacaaac gtattcggga tgccatcggc ttcaggttca taatcaggca
    34201 ccggaatgct gtcacgtgtc aggctgctga ccgccagctc gttgagcagc gttacatcaa
    34261 gaaccttatg cgcgcgtgct cccagtttca gcgccagttc gcgtgccacg tcgatttctg
    34321 cgcgatgtcg ctgaccgtaa tcgaacgtca cgcaatggac ttcatcatat tgttgtaatg
    34381 cctgcaccag acaggtggtg gaatcctggc ctccactgaa cacaacgaca gcacgtttca
    34441 tagataatcc tgcttgaaca ataaaagcgt tatggtaacg cctgcgatta acccggacca
    34501 gctattcatt gcgacggcgc gggaagccag gcttcggtaa attcaaacca gccgcgcggt
    34561 gtcagtcgca caccgttcac gccgggaggg gcactaatgc gatagtgata gttgaacagc
    34621 ggcgtcagcg tcgcgtctgc cattaactgg ctaaaaaccg ctttcagggc attaaatcgg
    34681 ttttcctcat caggcattac ttgcaccgcg tccagcgtcg attgcagatg tgcatatgct
    34741 ggagcgtcga aaacatgtgg ccatagtgga tcgcaacgta gccattgctc cagagtatat
    34801 tccggtgctt cgccaattaa tctgtcgccc atcatgaggt ctgcgtgtgc cagtagggtc
    34861 gtgtcgtccc agttttttgc gttatgaaaa ataattgtga gttcacagcc ttccgctgcc
    34921 agtgtcgcct gtaggcgttc tgccatggta tgaagttcta tcggtaggtg ataaaccagc
    34981 gtcaaggttt tcggtagttt gacttcatcc ggtacttgcc agtgcggaat agtccagcct
    35041 ggcagtaatg catgactggc ggtgatcagg ttttctccga cttctaacgt ttgtaataaa
    35101 ccggattgat gaataatgga gatcactttt cgcgcctgcc agagggagag tcggggactt
    35161 ttgcgcaacg ttaaatagca aaaacctaaa ctgatgccac tactgacctg gctgacccgt
    35221 tgcagctcct ccggtttgcc gatggtgatt tgcacgggat gccgacaact ggttcccaaa
    35281 tctttttcga aaagcggcgg agttatccag tactcaaccg ctttaagcag cggatgacgc
    35341 aaatggtaat aatcatggct ctccaggcgc accagctccg ctgtgaattg tgttaagcga
    35401 aaaggaccag tgccgatcag tgggaattgc ggatgcgcca gatggctgca atagctcgcc
    35461 agccggtgcg caagccagta atcggggcga tgtaaaaaga aggtcagaca ctgcggatgg
    35521 gtgacttcaa tacgcttcac gctaataaat aattgatcca gtgctggcag ttgtaacagc
    35581 atcaataatc gctggtgtaa gtgtgaggct tttactgcat cgccgttatg ccagtgtagg
    35641 gttgaacgaa gataaaagtc ccagcgtaac ccgtcagtag aggtttccca gtgatgcgct
    35701 aaatcgccaa tcgggcgctg agtattatta tcgaagcggg tcaggccgga aaatatctgc
    35761 ccggcgagat gctgctcggc acggccgggc aaaaagcctg gttgtagcgg ttcgagcggg
    35821 cgatagtagg gaatacgcaa cgtgggtgta tcgttttgcc attgtccgcc cataaacggc
    35881 tgtaacagag tgcgtagctc acctggggcc agttgcgcca gctccagcac atcttgctgc
    35941 tttccggttt ccagtgcctg ttccatcatc gcattgcgta gcgattccgg cgtgaccaga
    36001 aagcgtaatt gtccgcgctt tccgcgtcct gactgcgcct gccactccag ccatcccgcc
    36061 tcctgtgcct gacgcaacag cgtacgaaca tggcgttcgc tgcaaaaaca gcgttcggcc
    36121 agttcgctga cggtgacggt ttgcggcttt ccggctgaag gttgccacag acgttgatac
    36181 tggttaagac ggttgagcaa tcgcatataa acccggaaca atattattta actattcact
    36241 attacttccg tatatatcag gtgatactca atctccatta accgtgtcac agagtggaga
    36301 aagaaatggc tcgtctggca gcatttgata tggatggcac tttattgatg cctgaccatc
    36361 atttaggtga gaaaaccctc tctactttgg cgcgactgcg tgaacgcgac attaccctca
    36421 cttttgccac ggggcgtcat gcgctggaga tgcagcatat tctcggggca ctatcgctgg
    36481 atgcatattt gattaccggc aacggaacgc gcgtgcattc tctggaaggt gaacttttac
    36541 atcgtgatga tttacctgcg gatgtcgcgg agctggtgct gtatcagcaa tgggataccc
    36601 gagccagcat gcatatcttc aatgacgacg gttggtttac cgggaaagag atccctgcgt
    36661 tgttgcaggc atttgtctat agcggttttc gttatcagat aatcgatgtc aaaaaaatgc
    36721 cactcggcag cgtcaccaag atctgcttct gtggcgatca cgacgatctt acacgcttgc
    36781 agatccagct atacgaagca ttaggcgagc gtgcacattt gtgtttttcc gccacggatt
    36841 gcctcgaagt actgccggtg ggctgcaata aaggcgctgc attgacggtg ctgacccaac
    36901 atttaggttt atcgttgcgc gattgcatgg cctttggtga tgcgatgaac gatcgcgaaa
    36961 tgttaggcag cgtcggtagc gggtttatta tgggcaatgc gatgccgcaa ctgcgcgcgg
    37021 agctcccgca tttaccggtg attggacatt gccgaaatca ggctgtctct cactatttga
    37081 cgcactggct ggactatcca catctacctt attcccccga ataatgagat cccttccagc
    37141 accgggcaat tgcccggttt tttttgcgtt gaatttgtca ttttgtgccg tggtgtttaa
    37201 accgcacaga ataaattgtc gtgatttcac ctttaaaata gaattaaaag agaaaaaaat
    37261 tctctgtgga agggctatgt tagataaaat tgaccgtaag ctgctggcct tactgcagca
    37321 ggattgcacc ctctctttgc aggcactggc tgaagccgtt aatctgacaa ccaccccttg
    37381 ctggaagcgc ctgaaacggc tggaggacga cggtatcctt atcggcaaag tcgccctgct
    37441 ggatccggaa aaaataggcc tcggcctgac cgcctttgtg ctgataaaaa cgcaacatca
    37501 cagcagcgaa tggtattgcc gctttgtcac ggtggttacc gaaatgccag aagtgctggg
    37561 gttctggtgc atggctggtg aatacgatta tctgatgcgc gtccaggttg ccgacatgaa
    37621 acgctacgac gagttttata agcgtctggt aaacagcgtg ccggggctgt cggacgtcac
    37681 ttccagcttc gcgatggaac agattaaata caccacttct ttacccatcg aataaatatc
    37741 cagaatcagg tcaggacaca acgcgtgcga ttatttgctc aattaagctg gtatttccgt
    37801 cgggaatggc gtcgctatct cggggctgtc gccttgcttg tcattatcgc gatgctgcaa
    37861 ctggttccgc caaaagtggt tggtattgtt gtcgatggcg tgacagaaca acactttact
    37921 accgggcaga tcctgatgtg gatcgccacc atggtgctga ttgccgttgt ggtttatttc
    37981 ctgcgttacg tctggcgggt attgctgttt ggtgcgtctt atcaactggc tgttgaactg
    38041 cgtgaagatt attaccgtca gctaagccgg cagcatcctg agttttacct gcgtcatcgc
    38101 acgggtgacc tcatggctcg tgcgaccaat gacgtcgatc gcgtcgtgtt tgcagccgga
    38161 gaaggggtgc tgacgctggt ggattcactg gtgatgggct gcgctgtgtt gattatgatg
    38221 tctacgcaaa ttagctggca gttgacctta tttgccctgt tgccgatgcc agtgatggcg
    38281 atcatgatca agcgcaacgg cgatgccttg catgaacgct ttaagctggc acaggcggcg
    38341 ttttctagtc ttaatgaccg cacccaggaa agcctcacca gtatccgcat gatcaaagcc
    38401 tttggtctgg aagatcgcca gtcggcgtta tttgccgcgg atgccgaaga taccggcaaa
    38461 aaaaacatgc gggtggcgcg tattgatgct cgtttcgacc cgaccatcta tatcgcgatt
    38521 ggtatggcga acttgctggc gattggcggc ggtagttgga tggtggtgca gggcagttta
    38581 acgctgggcc agctcaccag ttttatgatg tatttaggtc tgatgatttg gccaatgctg
    38641 gcgctggcat ggatgtttaa cattgtggaa cgtggtagtg ctgcatacag ccgtattcgc
    38701 gcgatgctgg cggaagcgcc ggtggtgaac gatggtagcg aacccgtgcc ggaagggcgt
    38761 ggcgaactgg atgtaaatat tcaccagttc acgtatccgc agactgacca tcctgcgctg
    38821 gaaaacgtca atttcgccct gaaacccggt cagatgctgg gtatctgcgg gccgactggt
    38881 tccggcaaaa gtaccctgtt gtcgctcatt cagcgtcatt tcgacgtcag cgagggggat
    38941 attcgctttc atgatattcc tctgacgaag ttacaactcg atagctggcg tagccgcctg
    39001 gcggtagtta gccagacacc gttccttttt tccgacaccg tagcgaacaa catcgcgttg
    39061 ggttgcccga atgccaccca gcaagagatt gagcatgtcg cgcggttagc cagcgtacat
    39121 gacgatattt tgcgtctacc gcaaggttac gatacagaag tgggcgagcg cggcgtgatg
    39181 ctttccggtg ggcaaaaaca gcgtatctcc attgctcgag cgttattagt caacgcggaa
    39241 atcctcatcc ttgatgatgc gctttcggcg gtggacggac gcacagagca ccagatcctg
    39301 cataacctgc gtcagtgggg acagggaaga acggtaatca tcagtgccca tcgcctttcg
    39361 gcactgacgg aagc
//
LOCUS       DADMHM010000010        39134 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.010, whole genome shotgun sequence.
ACCESSION   DADMHM010000010 DADMHM010000000
VERSION     DADMHM010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 39134)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 39134)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..39134
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.010"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            132..341
                     /locus_tag="JN125_000485"
     CDS             132..341
                     /locus_tag="JN125_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HAY8870371.1"
                     /translation="MTNTTLVKYGKLGYIVPRPQKIRGRWLIDRRAVFVGPGETGIAP
                     EIHTGDDDALKEILTHVTEATKKQH"
     gene            310..1428
                     /locus_tag="JN125_000486"
     CDS             310..1428
                     /locus_tag="JN125_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HAY8870372.1"
                     /translation="MSPRPQKNSTDVAGLYEKFDRRTGRVYYQYKNPVTGKFHGLGTD
                     KGKAEKIASTANQRIAAAEAEYFMRKIDESPSATKRRGIRLKAWVDRYLKIQDTRLKN
                     GDIAATTHKEKTRMAAYLVSRLGNHPLKELEVRDFALILDEWLDKDMVSTARVNRGLW
                     VDIYKEAQHAGEVPPGWNPPEATRKPIPKVTRARLTMEDWQKIYNATPEKHFIRNAML
                     LAIVTGQRRDDICHMRFSDVWNEHLHITQGKTGMRLALPLTLRCDAIGITLKEVIDGC
                     RDRILSPYLIHSRHQKQPKPMSKDNLSDYFAKARDLAGIIPPAGKTPPTFHEQRSLSE
                     RLYRAQGIDTKTLLGHKVQATTDRYNDTRGQEWVKLVI"
     gene            1595..2389
                     /gene="potC"
                     /locus_tag="JN125_000487"
     CDS             1595..2389
                     /gene="potC"
                     /locus_tag="JN125_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotC"
                     /protein_id="HAY8870373.1"
                     /translation="MIGRLLRGGFMTAIYAYLYIPIIILIVNSFNSSRFGINWQGFTT
                     KWYSLLMNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKPFVSGMLFV
                     VMMSPDIVMAISLLVLFMLLGIQLGFWSLLFSHITFCLPFVVVTVYSRLKGFDVRMLE
                     AAKDLGASEFTILRKIILPLAMPAVAAGWVLSFTLSMDDVVVSSFVTGPSYEILPLKI
                     YSMVKVGVSPEVNALATILLVLSLVMVIASQLIARDKTKGNTGDVK"
     gene            2386..3432
                     /gene="potD"
                     /locus_tag="JN125_000488"
     CDS             2386..3432
                     /gene="potD"
                     /locus_tag="JN125_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     substrate-binding protein PotD"
                     /protein_id="HAY8870374.1"
                     /translation="MKKWSRHLLAAGALALGMSAAHADDNNTLYFYNWTEYVPPGLLE
                     QFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKS
                     KLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWAYLWKPEYK
                     GSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPY
                     MEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLIN
                     FLLRPDVAKQVAETIGYPTPNLAARKLLSPEVANDKTLYPDAETIKNGEWQNDVGAAS
                     SIYEEYYQKLKAGR"
     gene            complement(3588..4409)
                     /gene="cobB"
                     /locus_tag="JN125_000489"
     CDS             complement(3588..4409)
                     /gene="cobB"
                     /locus_tag="JN125_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent protein deacylase"
                     /protein_id="HAY8870375.1"
                     /translation="MLSRRDHRLSRFRKNKRRLRERLRQRIFFRDKVVPEAMEKPRVL
                     VLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQP
                     KIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQ
                     VLDWTGDVTPEDKCHCCQFPAPLRPHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGH
                     VYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKLLKGL"
     gene            complement(4425..5336)
                     /gene="nagK"
                     /locus_tag="JN125_000490"
                     /pseudo
     CDS             complement(4425..5336)
                     /gene="nagK"
                     /locus_tag="JN125_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415637.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine kinase"
     gene            complement(5365..6609)
                     /gene="lolE"
                     /locus_tag="JN125_000491"
     CDS             complement(5365..6609)
                     /gene="lolE"
                     /locus_tag="JN125_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit LolE"
                     /protein_id="HAY8870376.1"
                     /translation="MAMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVG
                     LSAMNGFERELNNRILAVLPHGEIEAVNQPWTNWQEALDKVQKVPGIAAAAPYINFTG
                     LVESGANLRAIQVKGVNPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKV
                     KQGDWVSIMIPNSNPEHKLMQPKRVRLHVAGILQLSGQLDHSFAMIPLADAQQYLDMG
                     SSVSGIALKMTDVFNANKLVRDAGEMTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAM
                     VLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCG
                     LIIGVVVSLQLTPIIERIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSL
                     LASWYPARRASNIDPARVLSGQ"
     gene            complement(6609..7310)
                     /gene="lolD"
                     /locus_tag="JN125_000492"
     CDS             complement(6609..7310)
                     /gene="lolD"
                     /locus_tag="JN125_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309522.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter
                     ATP-binding protein LolD"
                     /protein_id="HAY8870377.1"
                     /translation="MNKILLQCDNLCKRYQEGSVQTDVLHNVSFSVGEGEMMAIVGSS
                     GSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDF
                     TALENVAMPLLIGKKKPAEINSRALEMLKAVGLEHRANHRPSELSGGERQRVAIARAL
                     VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEM
                     RDGRLTAELSLMGAE"
     gene            complement(7303..8502)
                     /gene="lolC"
                     /locus_tag="JN125_000493"
     CDS             complement(7303..8502)
                     /gene="lolC"
                     /locus_tag="JN125_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004976588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein-releasing ABC transporter permease
                     subunit LolC"
                     /protein_id="HAY8870378.1"
                     /translation="MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTV
                     LSVMNGFERELQNNILGLMPQAILSSEHGSLNPQQLPETAVKLDGVNRVAPITTGDVV
                     LQSARSVAVGVMLGIDPAQKDPLTPYLVNVKQTDLEPGKYNVILGEQLASQLGVNRGD
                     QIRMMVPSASQFTPMGRIPSQRLFNVIGTFAANSEVDGNEMLVNIEDASRLMRYPAGN
                     ITGWRLWLDEPLKVDSLSQQKLPEDSKWQDWRDRKGELFQAVRMEKNMMGLLLSLIVA
                     VAAFNIITSLGLMVMEKQGEVAILQTQGLTPRQIMMIFMVQGASAGIIGAILGAALGA
                     LLASQLNNLMPIIGVLLDGAALPMAIEPLQVIVIALVAMAIALLSTLYPSWRAAATQP
                     AEALRYE"
     gene            8764..9837
                     /locus_tag="JN125_000494"
     CDS             8764..9837
                     /locus_tag="JN125_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HAY8870379.1"
                     /translation="MKQKELWINQIKGLCICPVVIYHSVITFYPHMTTFQHPLSEVLS
                     KCWIYFNLYLAPFRMPVFFFISGYLIRRYIDSVPWGNCLDKRIWNIFWVLALWGVVQW
                     LALSALNQWLAPERDLSNASNAAYADSTGEFLHGMITASTSLWYLYALIVYFVVCKIF
                     SRLALPLFALFVLLSVAVNFVPTPWWGMNSVIRNLPYYSLGAWFGATIMTCVKEVPLR
                     RHLLMASLLTVLAVGAWLFTISLLLSLVSIVVIMKLFYQYEQRFGMRSTSLLNVIGSN
                     TIAIYTTHRILVEIFSLTLLAQMNAARWSPQVELTLLLVYPFVSLFICTVAGLLVRKL
                     SQRAFSDLLFSPPSLPAAVSYSR"
     gene            9965..13411
                     /gene="mfd"
                     /locus_tag="JN125_000495"
     CDS             9965..13411
                     /gene="mfd"
                     /locus_tag="JN125_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HAY8870380.1"
                     /translation="MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVL
                     IAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ
                     RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRYVDQVMEHG
                     EYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFP
                     TDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYF
                     PANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNW
                     PRVQLKTKHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESE
                     GRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDKVRNLALICESDLL
                     GERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEY
                     LMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAA
                     ELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDR
                     LVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEM
                     ISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKE
                     RIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVV
                     REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMND
                     FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWL
                     LTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGF
                     SLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI
                     ASAKTENELEEIKVELIDRFGLLPDPARTLLDVARLRQQAQKLGIRKLEGNEKGGVIE
                     FAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENA
                     IA"
     gene            13555..14517
                     /gene="ldtC"
                     /locus_tag="JN125_000496"
     CDS             13555..14517
                     /gene="ldtC"
                     /locus_tag="JN125_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase LdtC"
                     /protein_id="HAY8870381.1"
                     /translation="MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPAGSRLVGEN
                     KFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPRE
                     GIVINIAELRLYYYPTGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTAN
                     TRARYKAQGIELPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCI
                     RLRDDDIKTLFSQVTPGTKVNIINTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPI
                     TLNSAMQSFKDAAQTDAEVMQHVMDVRSGMPVDVRRHQVSPQTL"
     gene            complement(14600..14856)
                     /gene="bhsA"
                     /locus_tag="JN125_000497"
                     /pseudo
     CDS             complement(14600..14856)
                     /gene="bhsA"
                     /locus_tag="JN125_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309517.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multiple stress resistance protein BhsA"
     gene            15097..15729
                     /gene="comR"
                     /locus_tag="JN125_000498"
     CDS             15097..15729
                     /gene="comR"
                     /locus_tag="JN125_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family copper-responsive transcriptional
                     repressor ComR"
                     /protein_id="HAY8870382.1"
                     /translation="MATDSTQCVKKSRGRPKVFDRDAALDKAMKLFWQHGYEATSLAD
                     LVEATGAKAPTLYAEFTNKEGLFRAVLDRYIDRFAAKHEAQLFCEEKSVESALADYFA
                     AIANCFTSKDTPAGCFMINNCTTLSPDSGDIANTLKSRHAMQERTLQQFLCQRQARGE
                     IPTHCDVTHLAEFLNCIIQGMSISAREGASLEKLMQIAGTTLRLWPELVK"
     gene            complement(15791..16330)
                     /locus_tag="JN125_000499"
     CDS             complement(15791..16330)
                     /locus_tag="JN125_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HAY8870383.1"
                     /translation="MNKSMLAGIGIGVAAALGVAAVASLNVFERGPQYAQVVSATPIK
                     ETVKTPRQECRNVTVTHRRPVQDENRITGSVLGAVAGGVIGHQFGGGRGKDVATVVGA
                     LGGGYAGNQIQGSLQESDTYTTTQQRCKTVYDKSEKMLGYDVTYKIGDQQGKIRMDRD
                     PGTQIPLDSNGQLILNNKV"
     gene            complement(16557..17861)
                     /locus_tag="JN125_000500"
     CDS             complement(16557..17861)
                     /locus_tag="JN125_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HAY8870384.1"
                     /translation="MTTPLKKIVIVGGGAGGLEMATQLGHKLGRKKKAKITLVDRNHS
                     HLWKPLLHEVATGSLDEGVDALSYLAHARNHGFQFQLGSVIDIDREAKTITIAELRDE
                     KGELLVPERKIAYDTLVMALGSTSNDFNTPGVKENCIFLDNPHQARRFHQEMLNLFLK
                     YSANLGANGKVNIAIVGGGATGVELSAELHNAVKQLHSYGYKGLTNEALNVTLVEAGE
                     RILPALPPRISAAAHSELTKLGVRVLTQTMVTSADEGGLHTKDGEYIEADLMVWAAGI
                     KAPDFLKDIGGLETNRINQLVVEPTLQTTRDPDIYAIGDCASCTRPEGGFVPPRAQAA
                     HQMATCAMNNILAQINGKPLKNYQYKDHGSLVSLSNFSTVGSLMGNLTRGSMMIEGRI
                     ARFVYISLYRMHQIALHGYFKTGLMMLVGSINRVIRPRLKLH"
     gene            complement(18261..18803)
                     /locus_tag="JN125_000501"
     CDS             complement(18261..18803)
                     /locus_tag="JN125_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAY8870385.1"
                     /translation="MIIYLHGFDSNSPGNHEKVLQLQFIDPDVRLISYSTRHPKHDMQ
                     HLLKEVDKMLQLNVDERPLICGVGLGGYWAERIGFLCDIRQVIFNPNLFPYENMEGKI
                     DRPEEYADIATKCVTNFREKNRDRCLVILSRNDEALNSQRTSEELHHYYEIVWDEEQT
                     HKFKNISPHLQRIKAFKTLG"
     gene            complement(18826..19851)
                     /gene="nagZ"
                     /locus_tag="JN125_000502"
     CDS             complement(18826..19851)
                     /gene="nagZ"
                     /locus_tag="JN125_000502"
                     /EC_number="3.2.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-N-acetylhexosaminidase"
                     /protein_id="HAY8870386.1"
                     /translation="MGPVMLDVEGYELDAEEREILAHPLVGGLILFTRNYHDPAQLRE
                     LVRQIRAASRNHLVVAVDQEGGRVQRFREGFTRLPAAQSFAALLGMEEGGKLAQEAGW
                     LMASEMIAMDIDISFAPALDVGHISAAIGERSYHADPEKALAIASRFIDGMHEAGMKT
                     TGKHFPGHGAVTADSHKETPCDPRPQAEIRAKDMSVFSTLIRENKLDAIMPAHVIYSD
                     VDPRPASGSSYWLKTVLRQELCFDGVIFSDDLSMEGAAIMGSYAERGQASLDAGCDMI
                     LVCNNRKGAVSVLDNLSPIKAERVTRLYHKGSFSRQELMDSARWKASSTRLNQLHERW
                     QEEKAGH"
     gene            complement(19862..20686)
                     /gene="thiK"
                     /locus_tag="JN125_000503"
     CDS             complement(19862..20686)
                     /gene="thiK"
                     /locus_tag="JN125_000503"
                     /EC_number="2.7.1.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine kinase"
                     /protein_id="HAY8870387.1"
                     /translation="MPFRSNNPITRDELLSRFFPQFHPVTTFNSGLSGGSFLIEHQGQ
                     RFVVRQPHDPDAPQSAFLRQYRALSQLPASIAPKPHLYLRDWMVVDYLPGAVKTYLPD
                     TNELAGLLYYLHQQPRFGWRIMLLPLLELYWQQSDPARRTVGWLRMLKRLRKAREPRP
                     LRLSPLHMDVHAGNLVHSASGLKLIDWEYAGDGDTALELAAVWVENTEQHRQLVNDYA
                     TRAKIYPAQLWRQVRRWFPWLLMLKAGWFEYRWRQTGDQQFIRLADDTWRQLLIKQ"
     gene            complement(20670..21308)
                     /gene="lpoB"
                     /locus_tag="JN125_000504"
     CDS             complement(20670..21308)
                     /gene="lpoB"
                     /locus_tag="JN125_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HAY8870388.1"
                     /translation="MTKMSRYALITALAMFLAGCVGQREPAPVEEVKPAPEQPAEPQQ
                     PVPTVPSVPTIPQQPGPIEHEDRTAPPAPHIRHYDWNGAMQPMVSKMLGADGVTAGSV
                     LLVDSVNNRTNGSLNAAEATETLRNALANNGKFTLVSAQQLSMAKQQLGLSPQDSLGT
                     RSKAIGIARNVGAHYVLYSSASGNVNAPTLQMQLMLVQTGEIIWSGKGAVSQ"
     gene            complement(21322..21699)
                     /locus_tag="JN125_000505"
     CDS             complement(21322..21699)
                     /locus_tag="JN125_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HAY8870389.1"
                     /translation="MRKGCFGLVSLVLLLLVGCRSHPEIPVNDEQSLVMESSLLAAGI
                     SAEKPVLSTSDIQPSASSTLYNERQKPVTVHYRFYWYDARGLEMHPLERPRSVTIPAH
                     SAVTLYGSANFLGAHKVRLYLYL"
     gene            complement(21702..22061)
                     /gene="hinT"
                     /locus_tag="JN125_000506"
     CDS             complement(21702..22061)
                     /gene="hinT"
                     /locus_tag="JN125_000506"
                     /EC_number="3.9.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415621.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine nucleoside phosphoramidase"
                     /protein_id="HAY8870390.1"
                     /translation="MAEETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIP
                     NILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHM
                     HLLGGRPLGPMLAHKGL"
     gene            22395..24584
                     /gene="fhuE"
                     /locus_tag="JN125_000507"
     CDS             22395..24584
                     /gene="fhuE"
                     /locus_tag="JN125_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric-rhodotorulic acid/ferric-coprogen
                     receptor FhuE"
                     /protein_id="HAY8870391.1"
                     /translation="MLSTQFNRDNQYQAITKPSLLAGCIALALLPSAAFAAPATEETV
                     IVEGSATAPDDGENDYSVTSTSAGTKMQMTQRDIPQSVTIISQQRMEDQQLQTLGEVM
                     ENTLGISKSQADSDPALYYSRGFQIDNYMVDGIPTYFESRWNLGDALSDMALFERVEV
                     VRGATGLMTGTGNPSAAIDMVRKHATSREFKGDVSAEYGSWNKERYVADLQSPLTEDG
                     KIRARIVGGYQNNDSWLDRYNSEKTFFSGIVDADLGDLTTLSAGYEYQRIDVNSPTWG
                     GLPRWNTDGSSNSYDRARSTAPDWAYNDKEINKVFMTLKQRFADTWQATLNATHSEVE
                     FDSKMMYVDAYVNKADGMLVGPYSNYGPGFDYVGGTGWNSGKRKVDALDLFADGSYEL
                     FGRQHNLMFGGSYSKQNNRYFSSWANIFPDEIGSFYNFNGNFPQTDWSPQSLAQDDTT
                     HMKSLYAATRVTLADPLHLILGARYTNWRVDTLTYSMEKNHTTPYAGLVFDINDNWST
                     YASYTSIFQPQNDRDSSGKYLAPITGNNYELGLKSDWMNSRLTTTLAIFRIEQDNVAQ
                     STGTPIPGSNGETAYKAVDGTVSKGVEFELNGAITDNWQLTFGATRYIAEDNEGNAVN
                     PNLPRTTVKMFTSYRLPVMPELTVGGGVNWQNRVYTDTVTPYGTFRAEQGSYALVDLF
                     TRYQVTKNFSLQGNVNNLFDKTYDTNMEGSIVYGAPRNFSITGTYQF"
     gene            complement(24644..26077)
                     /gene="ptsG"
                     /locus_tag="JN125_000508"
     CDS             complement(24644..26077)
                     /gene="ptsG"
                     /locus_tag="JN125_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000475716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIBC"
                     /protein_id="HAY8870392.1"
                     /translation="MFKNAFANLQKVGKSLMLPVSVLPIAGILLGVGSANFSWLPAVV
                     SHVMAEAGGSVFANMPLIFAIGVALGFTNNDGVSALAAVVAYGIMVKTMAVVAPLVLH
                     LPAEEIASKHLADTGVLGGIISGAIAAYMFNRFYRIKLPEYLGFFAGKRFVPIISGLA
                     AIFTGVVLSFIWPPIGSAIQTFSQWAAYQNPVVAFGIYGFIERCLVPFGLHHIWNVPF
                     QMQIGEYTNAAGQVFHGDIPRYMAGDPTAGKLSGGFLFKMYGLPAAAIAIWHSAKPEN
                     RAKVGGIMISAALTSFLTGITEPIEFFFMFVAPILYIIHAILAGLAFPICILLGMRDG
                     TSFSHGLIDFIVLSGNSSKLWLFPIVGIGYAIVYYTIFRVLIKALDLKTPGREDATED
                     AKATGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVV
                     AGSGVQAIFGTKSDNLKTEMDEYIRNH"
     gene            complement(26372..27169)
                     /locus_tag="JN125_000509"
     CDS             complement(26372..27169)
                     /locus_tag="JN125_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HAY8870393.1"
                     /translation="MFLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTL
                     TGYLHMRDLVGERDNVVFSCGVHPLNQNDPYDVEDLRRLAAEEGVVALGETGLDYYYT
                     PETKVRQQESFIHHIQIGRELNKPVIVHTRDARADTLAILREEKVTDCGGVLHCFTED
                     RETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKE
                     NQPAMVRDVAEYMAVLKGVAVEELAQVTTDNFARLFHIDASRLQSIR"
     gene            complement(27180..28184)
                     /gene="holB"
                     /locus_tag="JN125_000510"
     CDS             complement(27180..28184)
                     /gene="holB"
                     /locus_tag="JN125_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HAY8870394.1"
                     /translation="MRWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYAL
                     SRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGIDAVREVTEKLNE
                     HARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCR
                     LHYLAPPPEQYAVTWLSREVTMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQ
                     ALAYSVPSGDWYSLLAALNHEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAE
                     LANHLSPSRLQAILGDVCHIREQLMSVTGINRELLITDLLLRIEHYLQPGVVLPVPHL
                     "
     gene            complement(28181..28822)
                     /locus_tag="JN125_000511"
     CDS             complement(28181..28822)
                     /locus_tag="JN125_000511"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HAY8870395.1"
                     /translation="MRSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGT
                     QLAEKLRSLVLDIKSVGDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHD
                     LSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIE
                     QESFDFFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHWVKELDA"
     gene            complement(28812..29834)
                     /gene="yceG"
                     /locus_tag="JN125_000512"
     CDS             complement(28812..29834)
                     /gene="yceG"
                     /locus_tag="JN125_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein YceG"
                     /protein_id="HAY8870396.1"
                     /translation="MKKVLLIILLLLVVLGIAAGVGVWKVRHLADSKLLIKEETIFTL
                     KPGTGRLALGEQLYADKIINRPRVFQWLLRIEPDLSHFKAGTYRFTPQMTVREMLKLL
                     ESGKEAQFPLRLVEGMRLSDYLKQLREAPYIKHTLSDDMYATVAQALELENPEWIEGW
                     FWPDTWMYTANTTDVALLKRAHKKMVKAVDSAWEGRADGLPYKDKNQLVTMASIIEKE
                     TAVASERDQVASVFINRLRIGMRLQTDPTVIYGMGERYNGKLSRADLETPTAYNTYTI
                     TGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVL
                     KEKNAQ"
     gene            complement(29837..30646)
                     /gene="pabC"
                     /locus_tag="JN125_000513"
     CDS             complement(29837..30646)
                     /gene="pabC"
                     /locus_tag="JN125_000513"
                     /EC_number="4.1.3.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate lyase"
                     /protein_id="HAY8870397.1"
                     /translation="MFLINGHKQESLAVSDRATQFGDGCFTTARVIDGKVSLLSAHIQ
                     RLQDACQRLMIFCDFWPQLEQEMKTLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATR
                     ILSITVYPAHYDRLRNEGMTLALSPVRLGRNPHLAGIKHLNRLEQVLIRSHLEQTNAD
                     EALVLDSEGWVTECCAANLFWRKSNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVE
                     VQASLEEALQADEMVICNALMPVMPVRACGDVSFSSATLYEYLAPLCERPN"
     gene            complement(30766..32007)
                     /gene="fabF"
                     /locus_tag="JN125_000514"
     CDS             complement(30766..32007)
                     /gene="fabF"
                     /locus_tag="JN125_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HAY8870398.1"
                     /translation="MSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTS
                     AYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIG
                     AAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISI
                     ATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQA
                     ASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPEN
                     GAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKAIFGEAASRVLVSS
                     TKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNLDEGCDLDFVPHEARQVSGME
                     YTLCNSFGFGGTNGSLIFKKI"
     gene            complement(32095..32331)
                     /gene="acpP"
                     /locus_tag="JN125_000515"
     CDS             complement(32095..32331)
                     /gene="acpP"
                     /locus_tag="JN125_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016535861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HAY8870399.1"
                     /translation="MSTIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELV
                     MALEEEFDTEIPDEEAEKITTVQAAIDYINGHQA"
     gene            complement(32542..33276)
                     /gene="fabG"
                     /locus_tag="JN125_000516"
     CDS             complement(32542..33276)
                     /gene="fabG"
                     /locus_tag="JN125_000516"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HAY8870400.1"
                     /translation="MNFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQA
                     ISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEE
                     WNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIG
                     FSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRLGGAQEIANA
                     VAFLASDEAAYITGETLHVNGGMYMV"
     gene            complement(33289..34218)
                     /gene="fabD"
                     /locus_tag="JN125_000517"
     CDS             complement(33289..34218)
                     /gene="fabD"
                     /locus_tag="JN125_000517"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HAY8870401.1"
                     /translation="MTQFAFVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDL
                     WALTQQGPAEELNKTWQTQPALLTASVALYRVWQQQGGKAPAMMAGHSLGEYSALVCA
                     GVIDFADAVRLVEMRGKFMQEAVPEGTGAMAAIIGLDDASIAKACEEAAEGQVVSPVN
                     FNSPGQVVIAGHKEAVERAGAACKAAGAKRALPLPVSVPSHCALMKPAADKLAVELAK
                     ITFNAPTVPVVNNVDVKCETNGDAIRDALVRQLYNPVQWTKSVEYMAAQGVEHLYEVG
                     PGKVLTGLTKRIVDTLTASALNEPSAMAAALEL"
     gene            complement(34234..35187)
                     /locus_tag="JN125_000518"
     CDS             complement(34234..35187)
                     /locus_tag="JN125_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HAY8870402.1"
                     /translation="MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHI
                     AAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGIKG
                     CPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDG
                     AGAAVLAASEEPGIISTHLHADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVT
                     ELAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTS
                     AASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVRF"
     gene            complement(35255..36325)
                     /gene="plsX"
                     /locus_tag="JN125_000519"
     CDS             complement(35255..36325)
                     /gene="plsX"
                     /locus_tag="JN125_000519"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415608.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HAY8870403.1"
                     /translation="MTRLTLALDVMGGDFGPSVTVPAALQALNSNSQLTLLLVGNPDA
                     ITPLLAKADFEQRSRLQIIPAQSVIASDARPSQAIRASRGSSMRMTLELVKEGRAQAC
                     VSAGNTGALMGLAKLLLKPLEGIERPALVTVLPHQQKGKTVVLDLGANVDCDSTMLVQ
                     FAIMGSVLAEEVVEIPNPRVALLNIGEEEVKGLDSIRDASAVLKTIPSINYIGYLEAN
                     ELLTGKTDVLVCDGFTGNVTLKTMEGVVRMFLSLLKSQGEGKKRSWWLLLLKRWLQKS
                     LTRRFSHLNPDQYNGACLLGLRGTVIKSHGAANQRAFAVAIEQAVQAVQRQVPQRIAA
                     RLESVYPAGFELLDGGKSGTLR"
     gene            complement(36406..36579)
                     /gene="rpmF"
                     /locus_tag="JN125_000520"
     CDS             complement(36406..36579)
                     /gene="rpmF"
                     /locus_tag="JN125_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HAY8870404.1"
                     /translation="MAVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHIT
                     ADGYYRGRKVIAK"
     gene            complement(36631..37152)
                     /gene="yceD"
                     /locus_tag="JN125_000521"
     CDS             complement(36631..37152)
                     /gene="yceD"
                     /locus_tag="JN125_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001174481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA accumulation protein YceD"
                     /protein_id="HAY8870405.1"
                     /translation="MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSD
                     VECSMSFAIDNQRLAVLNGDAKVTVTLECQRCGKPFTHQVYTTYCFSPVRSDEQAEAL
                     PEAYEPIEVNEFGEIDLLAMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEVQK
                     PNPFAVLASLKRK"
     gene            37351..37935
                     /gene="yceF"
                     /locus_tag="JN125_000522"
     CDS             37351..37935
                     /gene="yceF"
                     /locus_tag="JN125_000522"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415605.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-methyl-GTP pyrophosphatase"
                     /protein_id="HAY8870406.1"
                     /translation="MPKLILASTSPWRRALLEKLQISFECAAPEVDETPRSDESPRQL
                     VLRLAQEKAQSLASRYPDHLIIGSDQVCVLDGEITGKPLTEENARLQLRKASGNIVTF
                     YTGLALFNSANGYLQTEVEPFDVHFRHLSEAEIDNYVRKEHPLHCAGSFKSEGFGITL
                     FERLEGRDPNTLVGLPLIALCQMLRREGKNPLMG"
     gene            complement(38047..39006)
                     /gene="rluC"
                     /locus_tag="JN125_000523"
     CDS             complement(38047..39006)
                     /gene="rluC"
                     /locus_tag="JN125_000523"
                     /EC_number="5.4.99.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(955/2504/2580) synthase
                     RluC"
                     /protein_id="HAY8870407.1"
                     /translation="MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRK
                     GEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHI
                     LVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSAL
                     RSLHEQLREKGMQKDYLALVRSQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSET
                     RFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTG
                     LNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNAR"
BASE COUNT         9743 a        10428 c         9592 g         9371 t
ORIGIN      
        1 gcggagcagg aaggacatct gatggaaatg gaaaccacgc aagcacctta aaatcaccat
       61 catacactaa atcagtaagt tggcagcatt acccgctcga cgagtggaaa ccaaaacggt
      121 tcagtctccc aataacaaac actaccctgg tgaaatacgg aaaactagga tacatcgttc
      181 caagaccaca aaaaattcgt gggcgttggc tgatagatcg ccgagcagta tttgttgggc
      241 ctggtgaaac gggaattgcg ccggaaattc atactggcga tgatgatgca ctgaaggaga
      301 ttttaactca tgtcaccgag gccacaaaaa aacagcactg acgtagccgg tctttacgaa
      361 aagtttgatc gcagaactgg cagagtttac taccagtata aaaatcctgt gactggaaaa
      421 tttcacggac tcggaacaga caaaggtaag gcagaaaaaa tcgcttccac agccaatcag
      481 cgaatagctg cagcagaagc tgaatatttc atgcgcaaaa ttgatgaaag tccgtcagca
      541 acaaaacgtc ggggtatcag attaaaagca tgggttgatc gatatctgaa aatacaggac
      601 acgcgactga aaaatggaga tattgcagct acaactcaca aagaaaaaac tcgaatggct
      661 gcatacctag tttcccgtct gggaaaccac ccattgaaag aactggaagt aagagacttt
      721 gcattaatac tggatgagtg gctggataaa gacatggtca gcacagcgag agtaaatcgt
      781 ggattatggg ttgatattta taaagaagca cagcatgcag gggaagttcc tcctggatgg
      841 aatcctccgg aggctacccg taaaccgatc cctaaagtaa ccagagccag gctcaccatg
      901 gaagactggc aaaaaattta caatgcaacg cctgaaaaac actttatccg taacgcaatg
      961 cttcttgcga ttgttactgg tcagcgccgt gatgacattt gccacatgcg tttttcagat
     1021 gtgtggaacg aacacttgca tatcacccag ggaaaaaccg gaatgcgtct ggcgttaccg
     1081 cttacactac gctgtgatgc cattgggata acgttaaaag aagttattga tgggtgccga
     1141 gacagaatat taagtccata tctaatccat agtcggcacc agaaacaacc gaagccgatg
     1201 agtaaagaca acctgagcga ctactttgcc aaagcacggg atctggctgg gataattcca
     1261 ccagcaggaa aaactccgcc aacatttcat gaacaacgct ctctatcaga acggctgtac
     1321 cgtgcacagg gtatcgatac aaaaacatta ctaggacata aagtccaggc aaccaccgat
     1381 cgctataacg atactcgagg tcaggaatgg gttaagctgg ttatttgaca aacaccatat
     1441 ggaatatccg tcaccatctc aggaaaaaag tgttgtaaaa tgcgtggcct agttttgggg
     1501 aaacgttttg gagagatttt ggagaaagga aaaaattgaa taaattcaaa atcctgaaag
     1561 tgctccacct tatgaataag aaggtggaac tcgaatgatc ggtcgactgc ttcgcggcgg
     1621 ttttatgacc gctatctacg cgtacctgta tatcccaatc attattttga ttgtgaactc
     1681 ctttaacagc tcgcgctttg gcatcaactg gcagggtttt accaccaaat ggtatagcct
     1741 gctgatgaac aacgacagcc tgttacaggc agcgcagcat tcactaacaa tggcggtgtt
     1801 ttcggcgacg tttgctacgc ttatcggttc actgacggca gttgcgctgt accgttatcg
     1861 ctttcgcggt aagccgttcg ttagcggaat gctgtttgtg gtaatgatgt caccagatat
     1921 cgtgatggca atttcgctgc tggtgctgtt tatgctgctg ggtattcagc ttggcttctg
     1981 gtcgctgctg ttctcgcata tcaccttctg cctgccattt gtggtggtga cggtgtattc
     2041 gcgcctgaaa ggttttgacg tgcggatgct ggaagcggcg aaagatctcg gtgccagcga
     2101 atttaccatt ctgcgaaaaa tcatactgcc actggcaatg ccagcggtgg cagcgggctg
     2161 ggtgttaagc tttaccctgt cgatggacga tgtggtagtt tcttcgttcg tcaccggacc
     2221 aagttatgaa attctgccgt taaaaattta ttcgatggtc aaagtcggcg tatcgccgga
     2281 agttaacgcg ctggcaacca tattactggt gctgtcgctg gtgatggtta ttgccagtca
     2341 gcttattgct cgtgataaaa cgaaaggtaa cacaggggac gttaaatgaa aaaatggtca
     2401 cgccacctgc tcgcggcggg tgctctggca ctgggcatga gcgccgctca cgccgatgac
     2461 aacaacacgc tgtatttcta caactggacc gagtacgtgc cgccaggact gcttgaacag
     2521 ttcaccaaag aaaccggtat taaggttatc tattcgactt acgagtcgaa cgaaaccatg
     2581 tacgccaagc tgaaaacgta caaagacggt gcgtatgacc tggtggttcc ttcaacctat
     2641 tacgtcgata aaatgcgtaa agaagggatg atccagaaga tcgacaagtc gaagttaacg
     2701 aacttcagca atctcgatcc agacatgctc aacaagcctt ttgacccgaa taacgactac
     2761 tccattccgt atatctgggg ggcgacggcg attggtgtta acggtgatgc ggtggatccg
     2821 aaatctgtca ccagctgggc ctatctgtgg aagccagagt acaaaggcag cctgctgttg
     2881 accgacgatg cccgtgaagt gttccagatg gcgctgcgta agctgggcta ttccggtaac
     2941 accaccgatc cgaaagagat tgaagctgca tataacgagc tgaaaaaact gatgccaaac
     3001 gtcgcagcgt ttaactccga taacccggct aacccgtaca tggaaggcga agttaacctc
     3061 ggcatgatct ggaacggttc tgctttcgtt gcacgccagg cgggtacgcc tattgacgtg
     3121 gtgtggccga aagaaggcgg catattctgg atggacagcc tggcgatccc ggcaaatgcc
     3181 aaaaacaaag aaggcgcgct gaaattgatc aacttcctgc tgcgcccgga tgtggcaaaa
     3241 caggttgctg aaactatcgg ttatccaacg ccaaaccttg cggcgcgtaa gctgttaagt
     3301 ccagaagtgg cgaacgataa aacgctctac ccggatgctg aaaccattaa aaatggcgaa
     3361 tggcagaatg acgttggcgc agccagcagc atttatgaag agtattatca gaagctgaaa
     3421 gcaggacgtt aattcagcaa gcgggcggtg gtattaccgc ccgtttttta tttagcaagg
     3481 atgtggctaa tgagtcagga cagtagagtt ttatcccact ctttcgtcgg tattgtggtc
     3541 cgctcgtagg cctgataagc gtagcgcatc aggcaatgct tcctgcttta taatcccttc
     3601 agcaactttt caacaaactc aggcaccacc tggcttgccg ggccgtaata tttctcggca
     3661 aattcattac cgacctgact tggttcgaga ttcagttcca cggtgtgcgc gccatgcagt
     3721 ttcgcttcgt gaacaaaccc agccgccgga taaacatgcc cggaagtacc aatggcaatg
     3781 aaaatatcag ccatcgacaa cgccatataa atttcatcca tgccgagtgg catttcgcca
     3841 aaccaaacga cgtgcgggcg caagggtgcc gggaactggc aacaatggca tttatcttct
     3901 ggcgtaacgt ctccggtcca gtcgagaacc tgaccacttt gcgaacaacg aactttcagc
     3961 aattccccat gcatatgaat gacattggta ttacctgcgc gttcatgcag gttgtctata
     4021 ttctgcgtta ccagcaaaaa gcgatcgccg agagcgtctt gcagtttagc cagcgcaaga
     4081 tgcgcggcgt taggctgaat ttttggctgc tgcagctgtc gacgacgggc gttataaaac
     4141 gcttgcacca gttcaggatc gcgatcgaaa ccttccggcg ttgccacatc ttcaacccga
     4201 tgttcttccc acaggccatc tgcggcgcga aaggtacgaa tacctgattc cgcagaaatt
     4261 cctgcccctg tcagtacgag tactcttggt ttttccattg cttccggcac cactttatct
     4321 ctgaaaaaaa tacgctgacg caaacgctcg cgcaggcggc gtttattttt acgaaaacga
     4381 cttaaccgat gatcccgacg cgacagcata gcaacctctg ttgtttaatc ggttagatgt
     4441 aggaaggccg caccacgcat tcctcccgca tcaccgtggc gcgcgcgttc aatgcgcgga
     4501 acacgagcta caggtaagag atgacgaggc agcctgtccg ccagttgcgt tgtgattgcc
     4561 gggaaattcg ataagccacc accaatgacg accaggtcag ggtcaacaat ggtcaggata
     4621 tttcccagac aaaccgctaa taaatccaga taacgctcaa cgtgcgccct tgcctgctca
     4681 tcgccttgat tataaagcgc aataatttcg ggagcctgca actgttgatg ataatagtgt
     4741 tgatacagcc acgcaaaacc gcgaccagac agataattct caatgcagcc atgctgacca
     4801 cagccgcagc ggcgtaacgg gaaatccaac cccatcatgg ttaacgcatc aaccggcaga
     4861 cgcatatggc caaactcgcc ggtaatgtag cttttaccgg taatcggttt gccgttgaaa
     4921 atcagcccac cgccaacgcc ggtaccaaga atcaacccca tcaccagtgg atattgcgta
     4981 aattcatcat ctcaggcttc tgaaagggca aaacagttgg catcgttatc aaggcgtaca
     5041 tcgcgatcaa gacgtgcgct caggtcggca cgcagcggtt taccgctggc agcggggaca
     5101 ttggcggcat acagcgtacc atcttctgtt tccggcattc ccggtatacc aatgccgaca
     5161 gaacctctac agccaaaacg ttgatcagct tcggctacca gctcgcacac tgcatctaaa
     5221 aatgcgtcat agctgtcacg cggtgtcggc acccgctttt cccactgcaa ctgccgaccg
     5281 ctatcaaaca cgccaagcgc aatttttgtt ccaccaatat caaacccgta atacattgcc
     5341 gctccttgtt ttaatgtact gcctttactg gccgctaagg actcgcgcag ggtcaatatt
     5401 actggcgcgc cgcgccggat accaacttgc caaaagactc agcaacaatg ctgtgaccag
     5461 tacgtagaag acgtccagcc agtgcaattc cgatggcagg aagtcaataa aatagatatc
     5521 gctggagagg aactgatgac cgatcagctt ttcaatccgc tcaataatcg gggtaagttg
     5581 cagtgaaaca actacgccga taatcagccc acacaggctg ccgaacagcc ctgccagcaa
     5641 tccataccag acaaagatgg cgcgaattaa accatctttc gcccccagcg ttcttaatac
     5701 tgcgatatcg ccactcttgt ctttcaccgc catcactaag gtggagacga tgttgaaaca
     5761 ggccacgcca atcaccagta ccatcgccag atacataatg gcgcggatca tctggatatc
     5821 gcgatacata tagccgtaag taccaatcca gcttttaata taaacatagc tgttggtcat
     5881 ttcacccgca tcgcgtacca gcttattggc gttgaaaaca tccgtcattt taagggcaat
     5941 acctgacacg ctggaaccca tatcaagata ttgttgggca tccgccagcg ggatcatggc
     6001 aaaactgtga tcgagttggc cactcaactg caaaataccc gcaacgtgca aacgcacacg
     6061 ttttggctgc atcagtttat gctcaggatt cgagttgggg atcatgatcg acacccaatc
     6121 gccctgcttc actttcagcg catccgccac gcctttgccg atgataattt gctgttcgcc
     6181 cgctttaaaa ttgcgccacg catccccctg aacaaacgag ggtaatgcgc tcagacgctg
     6241 ttcctgttgt gggttaacgc ccttcacctg gattgcgcgc agattcgctc cactttccac
     6301 cagcccggtg aaattgatat acggcgcagc ggcggcaata cccggcactt tctgcacttt
     6361 atccagtgct tcctgccagt tagtccatgg ctgatttacc gcttcgattt caccatgcgg
     6421 caacaccgcc agaatgcggt tattcagttc gcgttcaaag ccgttcatcg cgcttaagcc
     6481 gacgatcaat accgccacac cgagggcaat gccaatggta gaaatgacgg agatcagcga
     6541 caccatgcca ccgcgccgcc gtccgcgact aaaacgcagg ccaattaata acgataaagg
     6601 catcgccatt actccgcccc catcaggctc agttccgccg tcagacgtcc atcacgcatt
     6661 tctaactggc ggctcatacg tttcgccagt tgcaggtcgt gagtaaccac caggaaggcg
     6721 gtgccctgca agcgattcaa ttccccaagc aactggaaga tgctgtcggc gttacgcgca
     6781 tcgaggttac cggtaggctc atccgccagt accagacgcg gattattgac cagcgcacgg
     6841 gcaatcgcta cacgctggcg ttcgccgcca gaaagttcag atgggcggtg attcgcacga
     6901 tgctccagcc ccaccgcttt taacatctcc agtgcacggc tgttgatttc agcgggcttt
     6961 ttcttgccaa tcagcagcgg catagccacg ttttccaggg cggtaaaatc cggcagcagg
     7021 tggtgaaact gataaataaa gcccagtttc tggttgcgca gttctgcttt tgctgccgac
     7081 gacagtttgc tcatcggttg accgttaaag atcacatcgc cggaggttgg cgtatccagt
     7141 ccgcccagca ggtgcagcaa ggtgctttta ccggaaccag agctaccgac gatcgccatc
     7201 atttcacctt cgccgacgct gaaactgaca ttgtgcagta catcggtttg cacactgcct
     7261 tcctgatagc gtttgcacag gttgtcgcat tgcaacagga tcttattcat aacgtaaagc
     7321 ctcagcgggt tgtgtggcgg cagcgcgcca tgaagggtaa agcgtagaca gcagcgcgat
     7381 agccatcgcc accagcgcaa taacaatgac ctgtaaaggt tcgatagcca tcggcagcgc
     7441 cgcgccatca agcaggacgc cgattattgg catcagatta tttaactggc tggcaagcag
     7501 tgcgccaagc gccgctccga ggatcgcacc gataatcccg gcgctggccc cttgcaccat
     7561 aaagatcatc atgatttgtc gcggagttaa gccttgcgtt tgcaggatcg ctacttcgcc
     7621 ctgcttctcc atcaccatca gccccagcga ggtaataatg ttaaacgccg caacggcgac
     7681 aatcaggctc agcagtaaac ccatcatatt tttttccatg cgtacggcct ggaacaactc
     7741 gcctttacga tcacgccaat cctgccattt gctgtcttca ggcagttttt gctgacttaa
     7801 tgagtcgact ttcagcggct catccagcca caaacgccag ccggtaatat tgcctgccgg
     7861 ataacgcatc agacgcgagg catcctcaat attcaccagc atttcattgc catcgacttc
     7921 actgttggcg gcgaaagtgc caatcacatt gaacaggcgc tgacttggaa tacgccccat
     7981 cggcgtgaac tggctggcag atggtaccat catgcggatt tgatcaccgc gattaacgcc
     8041 tagctgtgag gcaagttgtt cgccgaggat gacattatat ttccccggct cgaggtcagt
     8101 ttgtttcaca ttgaccagat acggcgttag tggatctttt tgcgccggat cgatacccag
     8161 catcaccccg accgccacgc tgcgcgcgct ttgcagtacc acatcaccgg tagtaatagg
     8221 tgcgacgcga ttaacgccgt ccagtttgac tgccgtttcc gggagttgct gcgggttaag
     8281 agagccatgc tcagaagaga gaattgcctg tggcatcagg ccaaggatgt tgttttgcag
     8341 ctcgcgctca aagccgttca tcactgacaa tactgtgacc agcgccatca ccccgagggt
     8401 aatgccgatg gtagaaagcc aggagacgaa acgaccgaag cgatccgctg cacgcccacg
     8461 catgtaacgc aggccaataa ataaagcgac aggttggtac atgaaatccg tctggttgct
     8521 gtagcaaaga cacgagtata taagcgaaag caagatgggt aaacgtctga actgtaagtg
     8581 atcgtcaggg ctaatctgaa aagcccccgt aaatcaatcg gctaaattgc catgttttat
     8641 catcaatctt gccgcctgat cttaatctga aaaatcatcc aatacagaca gatacccatt
     8701 acacctcggg tcataacccg caggatcaac cgcatgtaaa ttaaaaaaga gcgtgttgtc
     8761 ctgatgaaac aaaaagagct atggattaac cagatcaaag ggttatgtat ttgtccggtg
     8821 gtgatttatc actcggtcat taccttttat ccgcatatga ccacttttca gcatccgtta
     8881 tcggaagtcc tgagcaaatg ctggatctat ttcaatcttt accttgcacc ctttcgtatg
     8941 ccggtttttt tctttatatc cggctatttg attcgccgct atatcgacag cgtaccgtgg
     9001 ggaaattgtc tcgataaacg gatctggaac atcttctggg tgctggcgct ttggggcgtg
     9061 gtgcagtggc tggcgttaag tgcgctgaac cagtggctgg cacctgagcg cgatttaagc
     9121 aatgcctcca atgccgctta tgccgattcc accggtgagt tcctgcacgg gatgatcacc
     9181 gccagcacca gcttgtggta tctgtatgcg ttaattgtct atttcgtggt atgtaaaatt
     9241 tttagccgtc tggcgctgcc actattcgcc ttgtttgtac tgctgagtgt ggcggttaat
     9301 ttcgttccca cgccgtggtg gggaatgaac agtgtgatcc gcaatttgcc ttattacagc
     9361 cttggcgcat ggtttggcgc aacaataatg acctgtgtta aagaggtacc gttgcgccgc
     9421 catctgctga tggcttcttt gcttaccgtt ctggcggtcg gtgcctggtt gtttactatc
     9481 tcgctgctgt tgtcgctggt atcgattgtg gtgatcatga agctgtttta tcagtacgag
     9541 caacgattcg gtatgcgctc caccagcctg ctgaatgtga ttggctccaa caccattgct
     9601 atctacacca cccatcgcat tctggttgaa atattcagct taactctgct tgcgcaaatg
     9661 aacgcagcac gctggtcgcc gcaagtcgaa ctgacactcc tgctggttta tccctttgtc
     9721 agtttgttca tctgtactgt tgcgggcttg ctggtaagaa aactttcaca gcgtgcattc
     9781 agcgatctgt tgttctcccc gccttcactg cccgctgccg tcagttactc ccgctaagcc
     9841 atcgccccag ccggggcgat tcaatttgct aaaccatgtc gattacggat aatgaacagc
     9901 attgcttatc agagatatgc ccccatatgt tgaggcatat cctaacgaga atctgacaac
     9961 cgttatgcct gaacaatatc gttatacgct gcccgtcaaa gcgggtgagc agcgtctgct
    10021 gggcgagtta accggcgcag cctgtgcaac gctggtagcg gaaattgccg aacgtcacgc
    10081 cggtccggtg gtactcattg caccagatat gcaaaatgct ctgcgtttgc atgatgaaat
    10141 cagtcagttc accgatcaga tggtgatgaa tctggcggac tgggaaactc ttccctacga
    10201 cagcttttcg cctcatcagg acattatctc ctcgcgcctt tccacccttt accagctacc
    10261 gacgatgcag cgtggcgtac tgattgttcc ggtgaatacg cttatgcagc gcgtttgccc
    10321 acacagtttt ctccacggtc atgcgctggt gatgaaaaaa ggtcagcgcc tgtcacgaga
    10381 tgcattacga acccaactgg acagcgccgg ttatcgctat gttgaccagg tgatggagca
    10441 cggcgaatac gccacgcgcg gcgcgttgct ggatctcttc ccgatgggga gtgagctgcc
    10501 ttatcgtctt gatttctttg atgatgaaat cgacagcctg cgggtgtttg acgtcgacag
    10561 ccagcgcacg ctggaggaag tagaagcgat caatctgctg cccgcgcacg aatttccgac
    10621 cgataaagcg gcaattgaac tgttccgcag ccagtggcgc gataccttcg aagtgaagcg
    10681 cgatccggaa catatttacc agcaagtgag taaaggcaca ttacctgccg ggatcgagta
    10741 ctggcagcca ttgttcttca gcgaaccact gccgccgctg ttcagttatt tccctgccaa
    10801 taccttgctc gtgaatactg gcgatctgga aaccagtgcc gaacgtttcc aggctgacac
    10861 gctggcgcgt tttgagaatc gcggcgtcga tccgatgcgc ccgctgttgc caccacaatc
    10921 gctctggctg cgggtggacg agctcttctc agagctgaaa aactggcccc gggtgcagct
    10981 aaaaactaaa catttaccga caaaagccgc gaatgccaat ttaggtttcc agaaactgcc
    11041 agacctggcc gttcaggcgc aacaaaaagc gccgctggat gcgctgcgta agttcctcga
    11101 gactttcgac ggtccggtgg tgttctcggt agaaagtgaa ggtcgccgtg aagcgctggg
    11161 tgaactgctc gcacgaatta aaattgctcc gcaacgcatt atgcgtcttg atgaagccag
    11221 cgaccgtggg cgttatctga tgattggcgc tgccgaacat ggttttgtcg ataaggtgcg
    11281 taatctggcg ctgatctgcg aaagcgatct gctcggtgaa cgtgttgccc gccgtcgtca
    11341 ggattctcgc cgcaccatca accccgatac actgatccgt aaccttgcgg agctgcatat
    11401 tggtcagccg gtggtccatc tggagcacgg tgtcgggcgc tatgccggaa tgaccacgct
    11461 cgaagcgggc ggcattactg gcgagtattt gatgctcacc tatgccaacg acgccaaact
    11521 gtatgttccg gtgtcgtcac tgcatctgat tagccgttac gcaggtggcg cggaagaaaa
    11581 cgccccgctg cataaacttg gcggcgatgc gtggtcacgc gcgcggcaga aagcggcgga
    11641 aaaagtgcgt gatgtggcgg cggaattgct ggatatctac gcgcaacgcg ccgccaaaga
    11701 gggcttcgcg tttaaacacg atcgtgagca gtatcagttg ttctgcgaca gcttcccgtt
    11761 tgaaaccacg ccggatcagg cgcaggccat taatgcggta cttagcgaca tgtgtcagcc
    11821 gctggcaatg gatcgtctgg tgtgcggcga tgttggcttt ggtaaaacag aagtggcgat
    11881 gcgcgccgct ttcctggcag tagataacca caagcaggtg gcggtgttgg tgcctaccac
    11941 ccttctcgcg cagcagcatt acgacaactt ccgcgaccgt ttcgccaact ggccggtacg
    12001 tatcgaaatg atctcccgtt tccgcagcgc caaagagcag acgcaaatcc ttgcggaagt
    12061 ggcggaaggg aaaatcgata ttctgatcgg tacgcacaaa ctgctgcaaa gtgacgtcaa
    12121 gtttaaagat ttaggcctgc tgattgtcga tgaagaacac cgcttcgggg tgcgtcataa
    12181 agagcgcatt aaagcgatgc gcgcgaacgt ggatattctg acgcttactg caacgccgat
    12241 cccacgcacg ctgaatatgg caatgagcgg aatgcgtgac ctgtcgatta tcgccacgcc
    12301 gcccgcccgt cgtctggcag ttaaaacctt tgtccgtgag tatgacagcc tggtggtccg
    12361 ggaggcgatc ctgcgtgaaa ttttgcgcgg ggggcaggtt tattatctct acaatgatgt
    12421 ggaaaacatc cagaaagctg ccgaacggct ggcagaactg gtgccagaag cgcggatcgc
    12481 catcggtcac gggcagatgc gcgagcgcga actggaacgg gtgatgaatg atttccatca
    12541 tcaacgtttc aacgtgctgg tttgtacaac cattatcgaa accgggatcg acatcccgac
    12601 agccaacacc attatcattg aacgcgcgga tcacttcggt ctggcgcagc tgcaccagtt
    12661 acgcggtcgc gtcggacgtt cacatcatca ggcatatgca tggctgctga cgccgcatcc
    12721 aaaagcgatg actaccgatg cacaaaaacg tcttgaagcg attgcctcgc tggaagatct
    12781 cggtgcaggc tttgcgctgg caacgcacga tctggagatc cgcggcgcgg gtgaactgct
    12841 tggcgaagaa caaagtggct caatggaaac catcggtttc tcgctgtata tggagttgct
    12901 ggaaaacgcc gtcgatgcac tgaaagccgg acgcgagccg tcgctggaag atctcaccag
    12961 ccagcaaaca gaagtcgagc tgcggatgcc gtcgctattg ccagatgatt tcattcctga
    13021 cgtgaatacg cgtttgtcgt tctataaacg tattgccagc gccaaaacgg aaaacgaact
    13081 ggaagagatc aaagtcgagc ttatcgatcg cttcggcctg ctgccggatc cggcgcgtac
    13141 cctgctggat gttgcccgtc tgcgccagca agcgcagaaa ctggggatca ggaagctgga
    13201 aggtaatgag aaaggcgggg tgatcgaatt tgccgagaag aatcacgtta atccggcctg
    13261 gttgattggt ttgctgcaaa aacagccgca gcattaccgc cttgatggtc cgacgcgcct
    13321 gaaatttatt caggatttga gtgagcggaa aacgcgtatc gaatgggtac gccagtttat
    13381 gcgtgaactg gaagagaacg cgatcgctta atggtaaatc gggggcgttt ctgcgccccc
    13441 atcggcaaca tttacaaatt ctttgcactt ccctgcacta tccgacactg tcaccatcca
    13501 taattcaggc ttatctgttt attacaataa ccttatattt attatggatt tttggtgatg
    13561 atcaaaacgc gtttttctcg ctggctaacg ttttttacgt tcgccgctgc cgtggcgctg
    13621 gcgctaccgg caaaagccaa cacctggccg ctgccgccag cgggcagtcg tctggttggc
    13681 gaaaacaaat ttcatgtggt ggaaaatgac ggtggttctc tggaagccat cgccaaaaaa
    13741 tataacgtcg gctttctcgc tctgttacag gctaaccccg gcgttgatcc ttacgtaccg
    13801 cgcgcgggca gcgtgttaac gatcccgttg caaaccctac ttccagacgc gccgcgcgaa
    13861 ggcattgtga tcaacattgc ggagctgcgt ctctattact acccgacggg taaaaattcg
    13921 gtaaccgtgt atccaatagg tattggtcag ttaggtggtg acacgctgac accgacaatg
    13981 gtgaccaccg tttcagacaa acgtgcaaac ccaacctgga cgccaacggc aaacacccgc
    14041 gcccgttata aagcacaggg aattgagttg cctgcggtag tgccggctgg accggataac
    14101 ccaatgggcc atcatgcgat tcgtctggcg gcctatggcg gcgtttattt gcttcatggt
    14161 acgaacgccg atttcggcat tggcatgcgg gtaagttctg gctgtattcg tctgcgggat
    14221 gacgatatca aaacactctt tagccaggtc accccaggca ccaaagtgaa tatcatcaac
    14281 actccgataa aagtctctgc cgaaccaaac ggtgcgcgtc tggttgaagt acatcagccg
    14341 ctgtcagaga agattgatga cgatccgcag ctgctgccaa ttacgctgaa tagcgcaatg
    14401 caatcattta aagatgcagc acaaactgac gctgaagtga tgcaacatgt gatggatgtc
    14461 cgttccggga tgccggtgga tgtccgccgt catcaagtga gcccacaaac tctgtaaatc
    14521 ctggataaaa aaaatccccg cgacacggca tgtcgcgggg aaaaaatcag cagtagcagg
    14581 cattaatgag ggttaatgct tatttataaa ttactgcttt ccatggaggg tattcggacc
    14641 ggttacagaa gtaatacgga aagattttgc gcccatctca tccgcttttt gcgccagctg
    14701 ctcttccagc gatcccagat ttgtccccgc tttagcactg attgtaccga ctttttgttg
    14761 gccttctggc gttgactgaa cttcgacagc cgcaaagctg gcaaatgaca tggagcttaa
    14821 aatcgccgca gcgatgaggg tttttacgtt tttcataata gtggccttat gcagatgaat
    14881 gacgtcgcaa gcaattattt aacgatcgat aactaaatga cagatgtgat ctggatcaca
    14941 tacaagatat tttttataac aatcattaat taatttaaaa atctttaaat ttcagttaaa
    15001 tagaaagcaa ttatttttat gggatctgga ctggtgaacg gaggtgatta tttttataat
    15061 aacctttcat tcacagtcac caggtacaac ggcatcatgg caactgactc aacacaatgt
    15121 gtaaaaaaaa gccgtggccg cccaaaagtg ttcgacaggg atgccgcgct tgataaggcc
    15181 atgaaattgt tctggcaaca cggttatgaa gcgacttctc ttgcggacct cgtcgaagcg
    15241 accggagcca aagcgcccac gctatacgcg gaatttacca acaaagaggg gttatttcgt
    15301 gccgttctcg accgctatat cgatcgtttt gccgctaagc atgaagcaca gctgttttgt
    15361 gaagagaaaa gcgtggagtc tgcgctggct gactattttg ctgccatcgc caactgcttt
    15421 accagcaaag acaccccggc aggctgcttc atgatcaaca actgcaccac cctctcccca
    15481 gattcaggag atatcgccaa tacgttgaaa tcacgccatg cgatgcaaga gcgcactttg
    15541 cagcagtttt tatgtcaacg acaagcgcgc ggggaaatcc cgacccactg tgacgtgaca
    15601 catctggcag aattccttaa ttgtattatt caggggatgt cgatcagcgc acgcgaaggt
    15661 gcatcgctgg aaaaactaat gcagattgcc ggaacgactt tgcgtttatg gcccgaactg
    15721 gtgaaataag tcgcaaaaaa agcccctcag cctgagcgaa tgaggggcca aattgcagag
    15781 tacagccttg ttatactttg ttattcaaaa tcagttgccc attactatct agcgggatct
    15841 gcgtacccgg atcgcggtcc atgcggattt tgccctgctg atcgccaatc ttataggtca
    15901 catcataacc gagcattttt tctgacttgt catacaccgt tttacaacgc tgttgcgtag
    15961 tcgtgtaagt atcgctttcc tggagagagc cctggatctg gttaccggca tatccaccac
    16021 ccagcgcccc cacaacagtg gcgacatctt taccgcgacc accgccaaac tgatgcccta
    16081 tcacgccgcc agcaacagcg ccgagcaccg acccggtaat gcgattttca tcctgcaccg
    16141 gtcgacgatg ggtcactgtg acgttgcgac actcctgacg cggtgtttta accgtttcct
    16201 tgattggggt tgcagaaaca acctgagcgt attgcgggcc acgttcaaac acgttcagac
    16261 tggccactgc cgctacgccc agcgcagctg cgacaccaat cccgataccc gccaacattg
    16321 atttattcac gggaacacct ccttctttgc agttatgcca atcatgcaag cgaaggagaa
    16381 aagcagctat cagacagaag atgaaaagcg cgggaatggc tggaaatact taatgattcg
    16441 gaggagtctg aaggaatgcc tgatgcgacg cttaacgcgt cttatcaggc ctaccgctcg
    16501 taccatttgt ctagggcgga tgaggcgttt atgccacatc cgccagtgta cgtcgattaa
    16561 tgcaacttca aacgcggacg gataacgcgg ttaatactcc ccaccagcat cattaatccg
    16621 gttttaaagt aaccatgcag cgcaatctga tgcattcggt atagcgagat atatacaaag
    16681 cgcgcaattc gtccttcaat catcattgag ccgcgcgtca agttacccat caggctacca
    16741 acggtggaga agttcgacag cgataccagt gaaccatgat ctttatactg ataatttttc
    16801 agcggcttac cgtttatctg cgccagaata ttgttcattg cgcaagtcgc catctggtgt
    16861 gcagcctgag cacgcggcgg aacaaagccc ccttccggac gcgtgcatga cgcgcagtcg
    16921 ccaatagcgt aaatgtctgg atcgcgggtg gtttgcagcg tcggttccac caccagctgg
    16981 ttgatacggt tagtttcaag accaccgata tctttcagga agtctggcgc tttgatcccg
    17041 gctgcccaca ccatcagatc agcctcaata tattcaccat ctttagtgtg caggccgcct
    17101 tcatcagcac tggtgaccat ggtttgcgtc agcacgcgaa cgccaagttt cgttaactca
    17161 ctatgggccg cagcagagat gcgtggcggt aatgcaggca aaatacgttc tcccgcttct
    17221 actagcgtta cgttcagggc ttcgttggtc agacctttat aaccgtagct gtgcagttgc
    17281 ttgaccgcgt tatgcaactc agcggagagt tctacacccg tcgcgccgcc accgacaatc
    17341 gcaatgttca ctttgccatt cgcgcccagg ttggcggagt atttcaggaa cagattcagc
    17401 atctcctggt ggaagcgacg cgcctggtgc gggttatcga ggaaaatgca gttctctttg
    17461 acgcctggcg tattgaaatc gttagaggtg ctacccagcg ccatgaccag ggtgtcatag
    17521 gcgattttac gttccggaac cagcagttca cctttctcgt cgcgtagttc tgcaatagtg
    17581 attgttttcg cttcacgatc aatatcaatg acggaaccca actggaactg gaaaccatga
    17641 ttgcgcgcat gggccagata gctcaacgca tcgacgcctt catcaagcga gccagtcgcc
    17701 acttcgtgca gcagcggttt ccacaggtgg ctgtggttac gatcgaccag cgtaattttg
    17761 gcttttttct tacgtcccag cttatgcccc agctgtgttg ccatttccag cccaccagca
    17821 ccgccgccga caatcacaat ctttttcaat ggcgtagtca acgtgacccc cttaaattta
    17881 ttaaccaatt gttaattaat ggttattaac atagctctta attaacaaca ggttacagca
    17941 atgaaaatgt tcttcgctat tgagaataac atgaatggtg cattggtcat accaaaattg
    18001 atgttaatca agttttgttg ctgaaaagat aggcgacttt accgggtaag atcaaaaaat
    18061 agagtttatt gtttattatt tgagcgaatt tgtgagagtg atatagagtg aggggtgtat
    18121 gcagggcgtt cggtaggcct gataagaggc gcatcaggca ttggtgctcg actgtcggat
    18181 gcggcgtaaa cgccttatcc gacttacaga attcggagcg catcaggtac cggcaaggtt
    18241 acctgatgcg acgagggcat ttacccgagg gttttgaacg ctttaatgcg ctgcaaatgc
    18301 ggggagatat tcttgaattt gtgcgtctgc tcttcgtccc agacaatctc gtaataatga
    18361 tgcaactctt cagatgtccg ctggctgtta agcgcttcat cattacgcga caaaatcacc
    18421 aggcaacgat cgcgattctt ctcgcggaag ttggtcacac acttagtggc aatatcggca
    18481 tactcttccg ggcgatcaat cttgccttcc atgttctcat aagggaacaa attagggttg
    18541 aagatcacct ggcggatatc gcaaagaaaa ccaatccgtt ccgcccagta tccgcccaga
    18601 ccaacgccgc aaatcagcgg acgctcgtcg acgttcagtt gcaacatttt gtccacttct
    18661 ttaagcagat gctgcatatc atgtttcgga tgccgcgtac tgtagcttat caagcgtaca
    18721 tccgggtcaa taaactgcaa ttgtaagact ttctcgtggt tacccggact gttagagtca
    18781 aaaccgtgta aatagataat catcgcttcc tcacataagc cagggttagt gacctgcttt
    18841 ctcttcctgc cagcgttcat gtaactgatt cagacgggtg ctgctcgcct tccagcgagc
    18901 cgagtccatc agttcctgtc gcgaaaatga acctttatga tacaaacgtg taacacgttc
    18961 tgccttgatc ggtgacagat tatctaacac gctgacggcc cctttacgat tattgcagac
    19021 caggatcata tcgcaacctg cgtccagtga tgcctgcccg cgttcggcat aactgcccat
    19081 aatcgcggca ccttccatcg ataaatcgtc agagaaaatt acaccgtcaa aacacagttc
    19141 ctgacgcaaa acggttttca gccagtagga agaaccgctc gccggacgcg gatcaacatc
    19201 actgtagatc acatgcgcag gcataatggc gtcgagttta ttttcgcgga ttaacgtgct
    19261 gaaaaccgac atatctttgg cacgaatttc cgcttgcggg cgtgggtcgc acggcgtctc
    19321 tttgtgtgaa tctgcagtta ctgcaccgtg tcctgggaag tgtttcccgg tcgttttcat
    19381 tccggcttca tgcatcccat caataaaccg actggcgatt gccagggctt tttctgggtc
    19441 ggcatgataa gaacgctcgc caatcgccgc gctgatatgt cctacatcca gcgctggcgc
    19501 aaagctgata tcaatatcca tagcgatcat ttcgctggcc atcagccaac ccgcctcttg
    19561 cgccagtttg ccgccctctt ccattcccaa cagcgcagca aaggattgtg ctgccggtaa
    19621 gcgggtaaaa ccttcgcgaa aacgctgcac gcgtccacct tcctgatcta ccgccaccac
    19681 cagatgattg cgcgatgctg cgcggatctg gcgcaccagt tcacgtaact gggcaggatc
    19741 atgatagtta cgcgtaaaga gaatcagccc tcccaccagc ggatgcgcca gtatttcacg
    19801 ctcttccgcg tccagttcgt aaccttcgac atccaacatt actggaccca cactgctctc
    19861 cttattgttt tattaatagc tgccgccagg tgtcatcggc cagcctgata aattgttgat
    19921 cgccggtttg tcgccagcgg tactcaaacc accctgcttt gagcatcagc agccagggaa
    19981 accatcgcct gacctgacgc cataattgcg ccggataaat cttcgcgcga gtggcatagt
    20041 cattgaccaa ttgccggtgc tgttcagtat tttccaccca caccgccgcc agttccagcg
    20101 cggtatcacc atctccggca tactcccagt cgatgagttt taaccctgat gcgctatgca
    20161 ctaaatttcc ggcgtggaca tccatatgca atggacttaa gcgtaaaggt cgtggttccc
    20221 gcgctttgcg cagacgtttt aacattcgca gccaacccac agtccgccgc gccggatcgc
    20281 tttgctgcca gtacagttcc agtaacggca acagcattat tcgccagcca aaacgtggtt
    20341 gttgatgtag ataatacagc aagcctgcca gttcgttggt atccggcaaa tacgttttta
    20401 ccgcgccggg cagatagtcg actaccatcc agtcacggag atataaatgc ggcttcggtg
    20461 caatgcttgc gggtagttgt gataaagccc gatactggcg caagaacgcg gactgcggcg
    20521 catcaggatc gtgcggctga cgcacaacaa aacgctggcc ctgatgttca atgagaaaac
    20581 taccgccact aagcccacta ttaaacgtcg tgacgggatg aaactgcggg aaaaagcgcg
    20641 acagcaattc gtcgcgcgtg atgggattat tactgcgaaa cggcaccttt acctgaccag
    20701 ataatttcgc ccgtctgcac cagcatcagc tgcatttgta gggtcggagc gttaacgttg
    20761 ccagaggcgc tggagtacag cacgtaatga gcgccgacat tgcgggcaat gcctatggct
    20821 ttactacggg tgcctaaact gtcctgcggc gacaaaccta actgttgctt agccatcgac
    20881 agttgctggg cggaaaccag ggtaaatttc ccgttattag ccagcgcatt tcgcagcgtt
    20941 tcggtcgctt ctgcggcatt cagcgaaccg ttagtacggt tgttaacgct atcaaccagc
    21001 aggacgctac ccgcagtcac cccgtcagcc ccaagcatct tactgaccat cggctgcatt
    21061 gcgccattcc agtcataatg gcgaatatgc ggcgcaggcg gtgccgttcg atcttcgtgc
    21121 tcaattgggc ctggctgctg cgggatcgtc ggcaccgagg gcactgtggg gacaggctgt
    21181 tgtggctcgg ctggttgttc cggcgctggt ttcacttctt ctaccggtgc aggttcacgt
    21241 tgccccacac acccggcgag aaacatcgcc agcgcggtaa tcaaggcgta gcgactcatt
    21301 tttgtcatca agattcaccc cttacaaata tagataaagt ctgactttgt gcgcccccag
    21361 aaaattggcg ctgccgtaca gcgttaccgc cgaatgtgcg ggaatggtaa cgctgcgtgg
    21421 cctttccaga ggatgcatct ccagccctct ggcgtcatac cagtaaaaac gataatgaac
    21481 ggtaacgggt ttttgccttt cgttataaag cgttgaggat gctgaaggtt gaatatcaga
    21541 cgtcgaaagg acgggctttt ctgcactgat gcccgcagcc aataaagatg actccatcac
    21601 cagcgattgc tcatcattca ccggaatttc cggatgtgaa cgacagccca ccagcagtaa
    21661 caacaccaga gacaccagcc caaagcatcc ttttctcatc gttacagacc tttatgcgcc
    21721 agcattggtc ccagcggacg gccacccaac aagtgcatat ggatgtggta aacctcttgt
    21781 ccgccatggc ggttggtatt catgatcaga cgatagccat cttcggcaat accttcttgc
    21841 tcagcaattt ttgccgctac ggtgatcatg cgtcccagcg cctgctcatg ctcagctgag
    21901 acgtcgttca cagtcggaat gaggatattc ggaatgatca gaatatgcgt tggcgcttgc
    21961 ggcgaaatat cgcgaaacgc cgttaccaga tcatcctggt agacgatatc ggaggggatc
    22021 tcacgacgaa taattttgct gaatatagtt tcttctgcca cgacattttc ctttttcaaa
    22081 tagccatgcg ttgcgccatg ctacgccgcg ccacactgcg agtatagagt atggtcgagt
    22141 taaacctgct ctttcaacct taactcacga tttcttaagc aaaaaatcgt tttgctgccg
    22201 tatatatcgc cattattccc atttctgcct gcgaatgcgc tgaaaagaca ttctctgttt
    22261 ggtttacacg acaaatatga atgcgtatat ttctcatttg catttacaaa caaaattatt
    22321 cgcacactaa atataatcgc tcatcaccct cctccggcat gagcctgacg acaacataaa
    22381 ccatgagatt tcaaatgctt tcaacacaat ttaacaggga taatcaatat caagccatca
    22441 ccaaaccgtc actacttgcc ggttgcatag cactggcact attaccttct gccgcttttg
    22501 ctgcaccagc cactgaagaa acggtgattg ttgagggttc agccacagct ccagatgatg
    22561 gcgaaaatga ttacagcgta acgtctacct ctgcgggtac caaaatgcag atgactcaac
    22621 gtgatattcc tcagtcggtc actattatta gccagcagcg gatggaagat cagcagttac
    22681 aaacgctggg cgaagtgatg gaaaacacgc tggggatcag caaaagtcag gcggattccg
    22741 atcctgctct ttattattcc cgcggattcc agatcgataa ctatatggtt gatggtatcc
    22801 ccacctattt tgaatcgcgc tggaatctgg gcgatgcact ttctgatatg gcactgtttg
    22861 aacgcgtaga agtagtgcgt ggcgcgacag gactcatgac cgggacgggt aatccatctg
    22921 cggcaattga tatggttcga aaacacgcga ccagtcgtga atttaaaggc gatgtctcgg
    22981 cggaatacgg tagctggaac aaagaacggt atgtggcgga tttacaaagc ccactcaccg
    23041 aagacggtaa aatccgcgcg cgaattgtcg gcggctacca gaataacgac tcatggctgg
    23101 accgctacaa cagtgaaaag accttcttct ccggcattgt cgatgctgat ttaggcgatc
    23161 ttacgacgct ttcagccggt tacgaatatc agcgcattga tgttaatagc cctacctggg
    23221 gcggtttacc gcgctggaat actgatggca gcagcaacag ttacgatcgt gcacgcagta
    23281 ccgcacctga ctgggcgtac aacgataaag agatcaacaa ggtctttatg accctgaagc
    23341 agcggtttgc tgatacctgg caagcgacac tgaatgccac ccactctgaa gtcgaatttg
    23401 acagcaaaat gatgtatgtc gatgcctatg taaacaaagc ggatggtatg ctggttgggc
    23461 catacagtaa ttatggacct ggctttgatt atgtcggcgg caccggttgg aacagtggca
    23521 aacgtaaagt tgatgcgctg gatttgttcg ctgacggtag ttatgaattg tttggtcgtc
    23581 agcacaatct aatgtttggt ggcagttaca gcaaacaaaa caatcgttac ttcagttcat
    23641 gggccaacat cttcccggat gaaattggca gtttctacaa ctttaatggc aatttcccac
    23701 aaaccgactg gtcaccacag agcctggcac aggacgatac cacacatatg aaatcgttat
    23761 atgctgccac tcgagtcacc cttgccgatc cgctgcatct gatcctcggc gcacgttata
    23821 ccaactggcg ggttgatacg ctgacttaca gcatggagaa aaaccacacc acgccttacg
    23881 ctggtctggt gtttgacatc aatgacaact ggtcgaccta cgccagctat acctctattt
    23941 tccagccgca aaatgatcgt gacagttcag gcaaatatct ggctccaatc accggtaaca
    24001 actacgagct gggtctgaaa tcggactgga tgaatagccg tctgaccacc acgttagcca
    24061 tcttccgtat tgagcaggat aatgtcgctc agtccaccgg tacacctatc cccggcagca
    24121 acggcgaaac cgcctataaa gcggtggatg ggacagtcag taaaggggtg gaatttgaac
    24181 tcaacggcgc aattaccgac aactggcagc tgacatttgg cgcaacgcgc tatattgcag
    24241 aggataacga aggaaacgcc gttaatccta atctgccacg caccacggtt aaaatgttca
    24301 ccagctatcg gttgcctgtc atgccagagt tgacagtcgg cggtggtgtt aactggcaaa
    24361 atcgcgtgta taccgacacc gtgacaccgt atggcacctt ccgcgccgag caaggtagct
    24421 acgcgctggt ggatctcttc acccgctacc aggtgacgaa aaacttctcg ttacagggga
    24481 acgtcaataa cctgttcgac aaaacctacg ataccaacat ggaaggttct atcgtctacg
    24541 gcgcaccgcg taatttcagc attaccggca cgtatcaatt ctgaataaca cctgtaaaaa
    24601 aggcagccat ctggcagcct tagtctcccc atcgtcttac ggattagtgg ttacggatgt
    24661 actcatccat ctcagttttc aggttatcgg atttagtacc gaaaatcgcc tgaacaccag
    24721 aacccgcaac cactacgccc gctgcgccca gtttcttcag gccagcctga tccactttag
    24781 acacatcagc aacgctgacg cgcagacggg taatacatgc gtcgaggtta gtaatgtttt
    24841 ctttaccacc aaatgcagca accagagccg gtgccatttc gctggtacct gttgcttttg
    24901 catcttcagt cgcgtcttca cgacccggcg ttttcagatc cagtgcttta atcagcacgc
    24961 ggaagatggt gtagtaaaca atcgcataac cgataccgac gatcgggaac agccacagtt
    25021 tgctgctgtt accagacaga acgataaagt cgatcagacc gtgcgagaac gacgtaccgt
    25081 cacgcatccc cagaagaata cagattggga atgccaggcc tgccagaatc gcgtggatga
    25141 tgtacaggat cggcgcaacg aacatgaaga agaactcgat cggctcggtg ataccggtca
    25201 ggaacgaggt cagcgccgcg gagatcataa taccgcccac tttcgcgcgg ttttctggtt
    25261 tagcagagtg ccagatagca attgcggcag ctggcagacc gtacattttg aacaggaagc
    25321 caccagacag tttacccgca gtcgggtcac ccgccatata acgcggaatg tcgccgtgga
    25381 aaacctgacc tgctgcgttg gtgtattcac caatctgcat ctggaaaggt acgttccaga
    25441 tgtggtgcag accaaacggt accaggcaac gttcgatgaa accgtaaatg ccaaacgcaa
    25501 ctaccgggtt ctggtaagca gcccactgag agaaggtctg gattgcagaa ccaatcggcg
    25561 gccaaatgaa ggacagcaca acgccagtaa agatggcagc caggccagaa atgatcggca
    25621 caaagcgttt accggcaaag aagccaagat actcaggcag cttaatacgg tagaaacggt
    25681 taaacatgta cgctgcgatc gcaccggaga taatccctcc gagtacgcca gtatccgcca
    25741 ggtgtttaga ggcgatttct tcagcaggta aatgcagtac cagtggcgca accacggcca
    25801 tggttttaac catgatgcca taggcaacaa ctgcggccag cgcggatacg ccatcgttat
    25861 tggtaaagcc gagggcgaca ccgatcgcaa aaatcagtgg catgtttgca aagacggaac
    25921 cgcctgcttc tgccataaca tgcgatacaa cggcgggcag ccagctgaaa ttcgcggaac
    25981 cgacgcccag cagaatacct gcgataggta gtacggatac cggcagcatc agcgatttac
    26041 cgaccttttg caggttagca aatgcattct taaacataat tgagagtgct cctgagtatg
    26101 ggtgcttttt ttacgttctc acgcgtggca aggggggaga gcctcgccgt gtacagggca
    26161 tctaagcgcc ctttatttat tacacagagt aaaataattc agtgccaatt tgtttgacgg
    26221 ctatcacgtt tcaacttcag atcattggag aagttgcaca ttttgacaaa acatatgtca
    26281 caatatttca aacgcggtta ttcaccgccc aattttcggc ggtgaacttt actcgtttta
    26341 gccattaatt acgagcttta aaaaaactca ttcaacggat ggattgaagg cgggaagcgt
    26401 cgatgtgaaa cagacgggcg aagttatcgg tggttacctg cgccagttct tcaacggcaa
    26461 cacctttcaa cacagccatg tattctgcaa cgtcacgaac catcgcaggt tgattctctt
    26521 ttcctcgatg cggtaccggc gcaaggtaag gtgagtcagt ttccaccagt aatcgatcca
    26581 gggggacata acgcgcagca tcgcgcagtt gctccgcatt acggaaggtc acaatgccgg
    26641 aaaaggagat gtaaaatccg agatccagta atttacccgc cgtttctctg tcctctgtaa
    26701 aacagtgtag tacgccaccg caatccgtca ctttttcttc gcgcagaatt gccagcgtat
    26761 cggcacgggc gtcacgggta tggacgataa ccggcttgtt cagttcacga ccaatctgga
    26821 tatgatggat gaaggactct tgctgacgta ctttagtttc cggtgtgtaa taataatcca
    26881 gcccggtttc acccagcgct acaacaccct cttctgccgc cagacgacgt aaatcttcta
    26941 catcgtaggg atcattctgg ttgagtggat gcacgccaca agaaaatacg acgttgtcac
    27001 gttcgcctac cagatcccgc atatgtaaat aacccgttaa tgttgtggcg actgccagac
    27061 aaaatttcac atcgcgtgcg gcggctttcg ccagaacgtc atccacgtcc ttatgcaaag
    27121 attcataatc cagaccatcg agatggcagt gtgagtcgac taaaaacatg atgtctctct
    27181 taaagatgag gaaccggtag cacaacgccc ggttgcaggt aatgctcaat acgcagtaaa
    27241 agatcggtga tgagaagctc gcggttgatg cctgtgacag acattaactg ttcacgaatg
    27301 tggcaaacat cccccagtat agcctgcagg cgcgagggag aaagatggtt tgccagttcg
    27361 gcgaccaggc ccggcacatc aacattggtc acctgtgcag cgccatgatg gcgttttagc
    27421 gcatccatca gcaacgttgc cagccagtgt aaacgcgccg gagcttgttc atgattaagg
    27481 gccgccagca gcgaatacca gtcgcccgat ggtacgctat atgccaacgc ctgacacaat
    27541 gtttcacgag cctgccagtt atctccctga aacaacgcca gtgccgcgcc aggcgaaccg
    27601 gcacttaagc gcaatgcggc aagtaatgca tcctgtgaca ttgtcacttc gcgtgaaagc
    27661 caggtcacgg cgtactgttc cggcggcggc gcaaggtaat gtaaccgaca acgactacgt
    27721 aatgttgcca gtaaacgttc aggctcgcgg gtagccagga aaaaccaggt ttctgctggt
    27781 ggctcttcaa gcgttttcag caatgcgtta gccgcggcgt cggtcagtaa ggcagcatcg
    27841 gttacccaga caactttcgc accacctagg cgtgcgtgct cattcagctt ttcggtgacc
    27901 tcacgtaccg catcaatgcc cagcgtattt ttcccttttt cgggagccag ggtgtagtaa
    27961 tcgggatgcg tgccagcctg catcaactga catccacgac agtgaccgca acttttgtgg
    28021 ccctgcggtt gttggcagag taaataacgg ctcagggcgt agattaaagc atcatcgccc
    28081 atgcccggta acgcctgaat gagtagcgca tggtgacctc ttccggcctg atagctggct
    28141 accagttttt cgaaatcagg tcgtaaccat ggataccatc tcatgcgtcc aactccttca
    28201 cccagtgggt cacggtagtg cggattgcat ccatcacggc ctccagcggc tgggtggcat
    28261 caatggtatg aatactttta tcttgtgcag ccagttccag atagcgggcg cgggtgcgat
    28321 taaagaaatc gaaagactct tgctcaatac gatccagctc gccgcgcgca cgcgcgcgtt
    28381 ttaagccaac ttccggggta acatcgagat agagcgttaa gtcggggcga aaatccccga
    28441 gaacagcatc acgcagtgtt gccagcatat gttggtcaat accacgtcct ccgccctgat
    28501 acgcctgagt ggagagatcg tggcgatcgc caatcaccca ggtgccgtta gccagagctg
    28561 gtttgatgac cgtttctacc agttgaacgc gcgcggcata aaacatcaga acttcggctt
    28621 tatcggtaat gacttcatcg cctaccgatt tgatatccag caccaggctt cttaactttt
    28681 cggcaagttg cgtaccgcca ggttcccgag tgaaaaccat gtcgcggata cccagttgct
    28741 caagcgtctc aaccaccaca ttacgcgcgg tagttttgcc tgcgccttcc agcccctcaa
    28801 tgacgatata cttactgcgc atttttttcc ttaagcactt tcagataatc ctgcacagac
    28861 ttgttatggc tggcaagatt ggtattaaac gtgtgaccac ctttaccatc ggccacaaaa
    28921 tagagatacg gcgtttttgc cggatgcgca gcagccttca gcgaatccgc ccccggcgta
    28981 gctatcgcac ctggcggcaa accggtaatg gtataggtgt tatacgctgt cggcgtttcc
    29041 aggtctgcac gagaaagttt gccattataa cgctctccca tcccgtaaat cacggttggg
    29101 tcggtctgca ggcgcatacc aatgcgtaaa cggttgataa ataccgaggc aacctgatcg
    29161 cgttcactgg caacggcggt ttctttttcg ataattgatg ccatcgtcac cagctggttt
    29221 ttatctttat aaggcagacc gtccgcacgc ccttcccagg cgctatcgac cgctttcacc
    29281 attttcttgt gcgctcgctt gagtaacgcg acatcggtgg tattggcggt atacatccag
    29341 gtgtctggcc agaaccaacc ttcaatccac tccgggtttt ccagttcaag tgcctgcgct
    29401 acggtggcgt acatatcgtc actcagcgtg tgcttgatat acggagcctc acgcaattgc
    29461 ttgaggtagt cgctcagacg catcccttct accagtcgca gcgggaactg tgcttcttta
    29521 ccgctttcca gcaatttcag catctcgcgc acggtcatct gcggtgtaaa gcggtaagtc
    29581 ccggctttaa agtgagaaag atccggttcg atacgcagca accattgaaa aacccgtggg
    29641 cgattgatga tcttatcggc ataaagctgt tcaccaagcg ccagacgtcc ggtccctggc
    29701 ttcagggtaa atatcgtctc ttctttgata agcaatttgc tgtcggcaag atggcgaacc
    29761 ttccagacgc ccacaccagc ggcgataccc agtaccacca gcaataacaa gataatcaat
    29821 aacacttttt tcatgactaa ttcgggcgct cacaaagtgg ggctaaatat tcatataacg
    29881 ttgctgacga aaaggagaca tcgccacagg cacgtacggg catcactggc attaacgcat
    29941 tacaaataac catctcatct gcctgcaacg cctcttccag agaggcttgc acttcgacaa
    30001 gctgataaga ggattgtgcc agcaaacgga tacagaattg tcgcataatg ccgttaacac
    30061 ctgcctgatc cagtcgcggc gtataaacta cattgctctt ccgccagaac aaattagccg
    30121 cacagcattc cgtaacccac ccttcgctgt caaggaccag cgcctcatca gcgtttgtct
    30181 gctcaagatg agagcggatc aatacttgct caagccgatt aagatgttta atacctgcaa
    30241 gatggggatt gcgccccagc cgcaccgggc ttagcgccaa cgtcatccct tcgttacgca
    30301 aacggtcgta atgtgcagga taaaccgtaa tggagagaat ccgcgttgcc ggtccactgt
    30361 tcaatgtgct gtaccctcgc ccgccactac cgcgactgat cacgactttc agcacaccat
    30421 tttgctgttc tgctgccagc gttttcatct cttgttcaag ctgaggccag aagtcacaga
    30481 aaatcatcaa ccgctgacaa gcatcctgta gtcgctggat atgcgccgat aacaaactga
    30541 ctttaccgtc gataactctg gcggtggtaa aacaaccatc accaaactgc gttgcccgat
    30601 cgcttactgc cagcgattcc tgcttatgac cgttaattaa gaacataccg gctccttatc
    30661 agagaattgt tagtgtggca gcatgttcac tacggaacaa gtcggaataa aagctaagaa
    30721 aaaaggcccg caagcggacc ttttatatgg gtgggaaatg acaacttaga tctttttaaa
    30781 gatcaaagaa ccattagtgc caccgaagcc gaaggagtta cacagcgtgt attccattcc
    30841 gctgacctga cgtgcttcat gcggtacgaa atccagatcg caaccttcat ccaggttatc
    30901 caggttgatg gttggcggaa cagcctgatc gcgcagcgcc aggatggagt agatagactc
    30961 tactgccccc gccgcaccta acaggtgacc ggtcatagat ttcgtggagc ttaccaacac
    31021 acggcttgca gcttcaccga agatggcttt caccgcctgc gcttcagctt tatcgccagc
    31081 cggcgtagaa gtaccgtgcg cgttaacgta gccaatctga ctcgcttcaa tgcctgcatc
    31141 acgcagagca tttgccattg ccagagctgc gcctgcgcca ttttctggcg gtgacgtcat
    31201 atgataagca tcgctgctca taccaaagcc gacgagttca gcgtaaattt tcgcaccgcg
    31261 ttttttcgcg tgttcgtact cttctagtac cagcataccg gcaccatcgc ccagtacgaa
    31321 gccatcacgc tctttatccc acgggcggct cgccgcttgc gggttatcat tgcgggtaga
    31381 taatgcacgt gccgcgccaa aaccaccaac gcccagcggc gtactggctt tctctgcgcc
    31441 acctgcaacc atcacgtcag catcgccata cgcgataata cgcgcagcat gaccaatgtt
    31501 gtgcacgccg gaagtacagg cggtcgcgat agagatgctt gggccacgca ggccatacat
    31561 gatagtcaga tgacctgcca ccatgttcac aatcgttgac ggaacgaaga atgggctgat
    31621 cttacgtgga ccaccgttca tcagagatgt gtggttttct tcgatcagtc cgaggccgcc
    31681 aatcccggag ccaattgcgg caccaatgcg ggttgcgttc tcttccgtta tttcaaggcc
    31741 agaatcctgc atggcctgaa cgccagcgac aattccatat tgaatgaagg catccatctt
    31801 gcgctgttct ttgcgcgaga taatgtcctc acagttaaaa tcctttacta agccagcaaa
    31861 tttcgttgca taggcgctag tatcgaaatg gtcgattagg ctgatgccac tctgaccggc
    31921 aagcagagct ttccaggtag actctacggt attgccgaca ggagacaaca tgcccagtcc
    31981 ggtcacaact acacgacgct tagacacgtt tgtcctccag ggagggaaaa aatgattcta
    32041 gtgggacaaa aagataaaac tcaggcggtc gaacgaccgc ctggagatgt tcacttacgc
    32101 ctggtggccg ttgatgtaat caatggcagc ctgaacggtg gtgattttct cagcttcttc
    32161 gtccggaatc tcagtatcaa actcttcttc cagagccatt accagctcaa cggtgtcaag
    32221 agaatccgcg cccaggtctt caacgaaaga agcattgttg gtaacttctt cctgcttaac
    32281 gcccagctgt tcgccgataa ttttcttaac gcgttcttcg atagtgctca tactcttaaa
    32341 tttcctatca aaactcgctt tcgcgatggt tttcgtagtg tataaaatgt tgaaaaattt
    32401 gcaactaaat cccggcaggt cttaccacga ttttacgtta ttttgaggcc ttacccccca
    32461 ataacgcaaa tcattttgca ctaattatta ctcataacca cgcagactgc gcgcaacatg
    32521 agcattttgt gcaaatcgcg gtcagaccat gtacatcccg ccgttcacat gcaaagtttc
    32581 acccgtgatg taagctgctt cgtcggatgc caggaatgca accgcgttgg cgatttcctg
    32641 tgcgccgccg aggcgacccg caggaacctg cgccaggata cccgcacgct ggtcatcgct
    32701 cagcgcacgt gtcatgtccg tttcaataaa gcccggagca acaacgttta cagtaatacc
    32761 gcgtgacgca acttcgcgcg ccagtgattt actgaagccg atcaagcccg ctttcgccgc
    32821 agcgtagttg gcctgaccgc catttcccat ggtaccaacc acagaaccga tagtgataat
    32881 acgaccatga cgctttttca tcatagcgcg cattaccgct tttgacagac ggaaaacaga
    32941 tgaaaggttg gtttcgataa tatcgttcca ctcttcatct ttcattcgca ttaacaggtt
    33001 atcacgagtg ataccggcat tattgaccag gatatccact tcaccaaatt ctgcgcgaat
    33061 tttttccaga acagattcga tagatgccgg gtcggtcaca ttcaacatca gacctttgcc
    33121 gttagcacct aaataatcac tgatcgcctg agcgccattt tcactggtcg cagtgccaat
    33181 aactttcgcg ccacgggctg cgagcgtttc agcaattgcg cggccaattc cgcggcttgc
    33241 accggttacc agtgcgattt ttccttcaaa attcatgatt ttcctctttt aaagctcgag
    33301 cgccgctgcc atcgctgaag gttcgttcag cgccgaggcg gtcagggtgt cgacaatgcg
    33361 tttcgtcagg ccagttagca ctttgcccgg gccgacttca tagagatgtt ctacgccttg
    33421 cgctgccatg tactcaacag acttcgtcca ctgaaccggg ttatacaact gacgtaccag
    33481 tgcgtcacga atggcatcac cattggtttc gcatttcaca tcaacgttat tcacaacagg
    33541 aactgttggt gcgttaaagg tgattttcgc taattctact gccagtttgt cggctgctgg
    33601 tttcatcagc gcacagtgag acggtacgct cactggtaac ggcagcgcgc gttttgcgcc
    33661 cgcagcttta caggcagcgc cagcacgctc aaccgcctct ttatgaccgg caataaccac
    33721 ctgtcccgga gagttaaagt ttaccggaga aacgacctga ccttctgcag cttcttcaca
    33781 cgctttcgca atagacgcat catccagacc gatgattgcc gccatagcgc ccgtgccttc
    33841 tggtacggct tcttgcatga acttgccgcg catctcaacc agacgcaccg catcagcgaa
    33901 atcaatcacg ccagcgcaaa ccaacgcgga gtattccccc aggctgtgac cggccatcat
    33961 tgccggtgct ttaccgccct gctgctgcca tacgcgatac agcgcaacag atgcagtcaa
    34021 cagcgctggc tgggtttgcc aggttttatt cagttcttca gctggcccct gctgggtcag
    34081 cgcccacagg tcgtagccca gcgccgcaga agcttcagca aacgtttctt cgacaattgg
    34141 atagctcgcc gccatatcag ccagcattcc aacggtttga gaaccctgtc cagggaacac
    34201 aaatgcaaat tgcgtcatgt tttaatcctt atcctagaaa cgaaccagcg cggagcccca
    34261 ggtgaatcca ccgccaaagg cttcaagcag aaccaactgc cccggcttaa tgcgcccgtc
    34321 gcgtacagct tcatccagcg cgcacgggac agaggccgca gaggtattac cgtggcgatc
    34381 cagcgtcacc acgacattgt ccatagacat accgagtttt ttcgccgttg cactgataat
    34441 acgcaggtta gcctgatgcg gaaccagcca gtccagttga gaacggtcaa gattattcgc
    34501 cgccagcgtc tcatcaacga tgtgcgccag ttccgttacc gcaaccttga agacttcgtt
    34561 gcccgccatc gtcagatgaa ttgaattctc tggattcacg cggtcggcgt ttggcagcgt
    34621 cagcaattca ccataactac cgtcggcatg cagatgggtg gagatgattc ccggctcttc
    34681 agaggcagcc agcaccgcag cgcccgcgcc atcgccaaaa ataataatag tcccacgatc
    34741 tgttggatcg caggtgcgcg ccagtacatc ggaaccgacg accagagcat acttcaccgc
    34801 cccagatttc acgtattgat cggctacgct taatgcatag gtgaaacctg cgcaggctgc
    34861 tgcaacgtca aatgccgggc aacctttaat gcccaacatg ctttgaatct gacaagctgc
    34921 gctcgggaaa gcgtgcgtag cagaagtcgt tgccacaacg atcaggccaa tctggtcttt
    34981 ctcaatgccc gccatctcaa ttgcgcgtgt cgccgcttca aagcccatgg ttgaaacggt
    35041 ttcgtttggc gcggcaatgt ggcgttcgcg gataccggta cgagtgacaa tccactcgtc
    35101 agaggtgtcc accatttttt ccaaatcggc gtttgtccgc acttgttcgg gcagatagct
    35161 gccagtacca ataatcttcg tatacatgta cgctcagtca cttttcggtt atataccgtc
    35221 acttgcaaac tgcgagttcg ctggcagcgt cctgctaccg cagagttccg cttttgccac
    35281 cgtccagcag ctcaaaacca gctgggtata cagattccag gcgagcggca attcgctgag
    35341 gaacttgtcg ctgcaccgcc tgcactgcct gttcaatcgc gaccgcaaaa gctcgctgat
    35401 tggctgcacc atgacttttt atcaccgtgc cgcgcaatcc taacagacag gcgccgttat
    35461 actggtcggg gttgaggtga ctgaatcgcc tcgtcaggct cttttgtagc caacgcttta
    35521 ataacagtag ccaccacgac cgttttttcc cttcaccctg agatttcagc agagaaagga
    35581 acatcctgac aacaccttcc atcgtcttta acgtgacatt tcctgtaaag ccgtcacaaa
    35641 ccagcacatc tgtcttgcca gttaacaact cattggcttc aagatagccg atataattga
    35701 tagaagggat tgttttaagc accgctgagg catcccgaat actgtcgaga ccctttactt
    35761 cttcttcacc aatattgagc aacgccacgc gaggattggg aatttccacc acctcttcag
    35821 ccagaactga gcccataatg gcaaattgca ccaacattgt gctgtcacaa tcgacgttgg
    35881 cccctaaatc gaggaccacc gttttgccct tttgctgatg tggtaatacc gtcaccagcg
    35941 ccggacgctc aatcccctcc aagggcttga gtaataattt tgccagcccc atcagtgccc
    36001 cggtattacc ggcactgaca caggcttgcg ctcgaccttc tttcaccagc tccagggtca
    36061 tacgcattga actcccacga ctagcgcgga tagcttgcga aggccgggca tcactggcga
    36121 taactgactg cgcaggaata atctgcagac gcgaacgttg ttcaaagtca gctttagcaa
    36181 gtaatggcgt gatggcgtcg ggattgccga ctaaaagaag agtgagttgc gaattagaat
    36241 tcagtgcctg caatgctgca ggcactgtca cggaagggcc aaaatcccct cccatgacat
    36301 ctaacgccag ggttagacgt gtcaaggtat cgtcgccgcc cggtttggtc tttccccagt
    36361 tgcctgggga aaatcctcac taagcttcat cacgcagacg cgtgattact tagcgatgac
    36421 cttgcggccg cggtagtaac cgtcggcagt gatatggtga cgcaggtgtt tttcaccaga
    36481 agttttgtct acagacaggc tggtgactgc ggtcagcgcg tcatgggaac gacgcatgcc
    36541 acgtttggaa cgggttggtt tattctgttg tacggccatg gaccttactc ctcaattacg
    36601 gtttatcccc gatccaacgg ggagcaccaa ttacttacgc tttaagctgg ctaatacggc
    36661 aaatgggttt ggcttttgca cttcttcagg cagttcacca aagaccatgt ccgcttcgga
    36721 cacttcacag tgttcagaat catgcaccgg aactaccggc aaggcgagga tgatttcatc
    36781 ttcaaccatt gcaagcagat cgatttcacc gaattcgtta acctcaatcg gttcatacgc
    36841 ttccggcagt gcttcagcct gttcgtctga acgcacagga ctaaaacaat acgttgtgta
    36901 gacctgatga gtaaacggct tcccgcaacg ctgacactcg agcgttaccg tcaccttcgc
    36961 atcgccgttt aacactgcga gacgttggtt atcgatagcg aacgacatgg agcattccac
    37021 atcactgtcc acactgacca cggattcggc gacgcgctca acctgatcag gggtatagat
    37081 accctggtaa tcaaggcgtt tttgagccgt acgaaccgga tcgagagtca ggggtaattt
    37141 taccttttgc atagggcgcg catattaact ttgtaacgtc atagagtcaa agaaaaaggc
    37201 agcctgtggt tgccttttgc caataattcg cacacattgc gggttactgc tttattttcg
    37261 ttcagtgctg ataacgaaca tcaacctgca aaacgaagcg catagtttaa aatggctatc
    37321 atcaatacgc tatatctgat ggaaaaaaat atgcctaaac ttattttagc ctccacctcg
    37381 ccatggcgtc gcgctcttct ggaaaaactg caaatctctt ttgaatgtgc agcaccagag
    37441 gtcgacgaaa ccccacgcag cgacgaatca ccgcgacagt tggtgcttcg actggcacaa
    37501 gaaaaagcgc aatctctggc gtcacgttat ccggatcatt taattattgg ttcagaccag
    37561 gtatgtgttc ttgatggcga aatcaccggt aaaccgttaa cggaagaaaa tgcccgtctg
    37621 caattacgca aagccagcgg caatatcgtc accttctata ctggactggc gttgtttaat
    37681 tcggcgaatg ggtatctaca aacagaagtg gagccttttg acgtccattt ccgtcacctg
    37741 agcgaggcgg agattgataa ttacgtgcgt aaggagcatc ccctgcactg cgcgggtagc
    37801 tttaagagtg aaggatttgg cattacgctg tttgagcgtt tagagggacg tgaccctaac
    37861 acgctggttg gtttaccgct aatcgcgctg tgtcagatgt tacgtcggga agggaaaaac
    37921 ccgctgatgg gatagttgtt tgcgccggat gcggttacgt cgcatccggc aatcggtgca
    37981 ggcggcctga tgcggcgtaa acgccttatc aggccaaccg cccattatca ggcttatatg
    38041 cttgtattag cgcgcgttac gcagcttttg caaacaacgc ttcaaacctt catccatcgg
    38101 cgcttcgata cgcatcacct caccggtccc cggatgggta aacttcaacg ctgcggcgtg
    38161 caggaacaga cgatttaatc ccgtgcctgc ttcagtgagc tgtctgtcaa attcacggtc
    38221 accgtagcga tcgtcaaagg caatcggatg acccgcatac tgtgtatgca cacggatctg
    38281 atgagtacgt ccggttaccg ggctacaacg caccagggtg gcaaatgcat agcgttcttc
    38341 cactttaaag cgtgtttccg acggtttgcc ttcctgactg acacgcacga tacgttcgcc
    38401 gctttgcaga atatttttca ataacggcgc ttgaacgctc ttcacatgcg actgccactg
    38461 actgcgcacc agcgccaggt aatctttttg cattcctttt tcacgtaatt gctcatgcag
    38521 agaacgcaac gccgagcgtt ttttcgctac cagcaacaca cctgaagtgt cccggtcgag
    38581 acgatgaacc agttcaagga accgcgcttc cgggcgcaac gcccgcaaac cttcgataac
    38641 gccgaagctt aaaccactgc cgccatgtac cgccgtaccg gaaggtttat tcagcaccaa
    38701 gatatgatca tcttcatata agatgacgtc cgccagcgcc gccacctttt gcagatgtgg
    38761 cgaaaccgcc tcttcttccc gctcagcaac gcgaaccggt gggatacgca cctcatcacc
    38821 cgcttcgagt ttatattcag gcttaatacg ttttttgttc acccgcactt cgcctttacg
    38881 caaaatacgg taaatcatac tttttggtac gcctttcaat tgggtacgca aaaagttgtc
    38941 gatacgttgc cccgcttcgt cagcggtgat agcaacaatt tttacggatg gagtctctgt
    39001 tttcatggtg ggcgattcta attagccaac aggattcgcg ccactcattt ttctatgctt
    39061 atatttagtt ttacacctta ttacttcact acgtgatcac tttattgatg gttattaaac
    39121 caatcaccag caag
//
LOCUS       DADMHM010000011        38318 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.011, whole genome shotgun sequence.
ACCESSION   DADMHM010000011 DADMHM010000000
VERSION     DADMHM010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 38318)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 38318)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..38318
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.011"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(301..1941)
                     /gene="pgm"
                     /locus_tag="JN125_000524"
     CDS             complement(301..1941)
                     /gene="pgm"
                     /locus_tag="JN125_000524"
                     /EC_number="5.4.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-D-glucose phosphate-specific
                     phosphoglucomutase"
                     /protein_id="HAY8870408.1"
                     /translation="MAIHNRAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGT
                     SGHRGSAARHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVL
                     AANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPP
                     NGGPADTNVTKVVEDRANALLADGLKGVKRISLDEAMASGHVKEQDLVQPFVEGLADI
                     VDMAAIQKAGLTLGVDPLGGSGIEYWKRIGEYYNLNLTIVNDQVDQTFRFMHLDKDGA
                     IRMDCSSECAMAGLLALRDKFDLAFANDPDYDRHGIVTPAGLMNPNHYLAVAINYLFQ
                     HRPQWGKDVAVGKTLVSSAMIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEES
                     AGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGKNPQEHYNELAKRFGAPSYNRLQA
                     AATSAQKAALSKLSPEMVSASTLAGDPITARLTAAPGNGASIGGLKVMTDNGWFAARP
                     SGTEDAYKIYCESFLGEEHRKQIEKEAVEIVSEVLKNA"
     gene            complement(1967..2512)
                     /gene="seqA"
                     /locus_tag="JN125_000525"
     CDS             complement(1967..2512)
                     /gene="seqA"
                     /locus_tag="JN125_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation negative regulator SeqA"
                     /protein_id="HAY8870409.1"
                     /translation="MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAP
                     VTKEVRVASPAIVEAKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLD
                     AQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMI
                     EHIMQSMQFPAELIEKVCGTI"
     gene            2697..3461
                     /gene="ybfF"
                     /locus_tag="JN125_000526"
     CDS             2697..3461
                     /gene="ybfF"
                     /locus_tag="JN125_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HAY8870410.1"
                     /translation="MKLNIRAQTAQNQHNNSPIVLVHGLFGSLDNLGVLARDLVNDHN
                     IIQVDMRNHGLSPRDPVMNYPAMAQDLVDTLDAQQIDKATFIGHSMGGKAVMALTALA
                     RDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVIQ
                     FLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHPALFIPSGNSPYVSEQYRDDLL
                     AQFPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLND"
     gene            3532..3894
                     /gene="ybfE"
                     /locus_tag="JN125_000527"
     CDS             3532..3894
                     /gene="ybfE"
                     /locus_tag="JN125_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA regulated protein"
                     /protein_id="HAY8870411.1"
                     /translation="MYYGALSIRAEAWLIVSPEVTKIMAKEQTDRTTLDLFAHERRPG
                     RPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAEAVEALNELAESRNMSRSEL
                     IEEMLMQQLAALRSQGIV"
     gene            4034..4564
                     /gene="fldA"
                     /locus_tag="JN125_000528"
     CDS             4034..4564
                     /gene="fldA"
                     /locus_tag="JN125_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706540.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HAY8870412.1"
                     /translation="MAITGIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKSSKEDL
                     EAYDILLLGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLVALFGCGDQEDYAEYFCDAL
                     GTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKW
                     VKQISEELHLDEILNA"
     gene            4774..4860
                     /gene="uof"
                     /locus_tag="JN125_000529"
     CDS             4774..4860
                     /gene="uof"
                     /locus_tag="JN125_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001491546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fur leader peptide"
                     /protein_id="HAY8870413.1"
                     /translation="MIRIISRANSVTSSNEVNRLVTGQIPHD"
     gene            4853..5299
                     /gene="fur"
                     /locus_tag="JN125_000530"
     CDS             4853..5299
                     /gene="fur"
                     /locus_tag="JN125_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HAY8870414.1"
                     /translation="MTDNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLI
                     DMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFELTQQHHHDHLICLDCGKVIEF
                     SDDSIEARQREIAAKHGIRLTNHSLYLYGHCAEGDCREDEHAHEGK"
     gene            complement(5384..5710)
                     /locus_tag="JN125_000531"
     CDS             complement(5384..5710)
                     /locus_tag="JN125_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870415.1"
                     /translation="MKKLILIAIMASGLVACAQSTAPQEDSRLKEAYSACINTAQGSP
                     EKIEACQSVLNVLKKEKQHQHFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQE
                     IRSNNK"
     gene            complement(5760..7166)
                     /gene="chiP"
                     /locus_tag="JN125_000532"
     CDS             complement(5760..7166)
                     /gene="chiP"
                     /locus_tag="JN125_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chitoporin"
                     /protein_id="HAY8870416.1"
                     /translation="MRTFSGKRSTLALAIAGVTAMSGFMAMPEARAEGFIDDSTLTGG
                     IYYWQRERDRKDVTDGDKYKTNLSHSTWNANLDFQSGYAADMFGLDIAVFTAIEMAEN
                     GDSSHPNEIAFSKSNKAYDEDWSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLL
                     APHWSFMPGTYQGAEAGANFDYGDAGALSFSYMWTNEYKAPWHLEMDEFYQNDKTTKV
                     DYLHSLGAKYDFKNNFVLEAAFGQAEGYIDQYFAKASYKFDIAGSPLTTSYQFYGTRD
                     KVDDRSVNDLYDGTAWLQALTFGYRAADVVDLRLEGTWVKADGQQGYFLQRMTPTYAS
                     SNGRLDIWWDNRSDFNANGEKAVFFGAMYDLKNWNLPGFAIGASYVYAWDAKPATWQS
                     NPDAYYDKNRTIEESAYSLDAVYTIQDGRAKGTMFKLHFTEYDNHSDIPSWGGGYGNI
                     FQDERDVKFMVIAPFTIF"
     gene            complement(7613..9277)
                     /gene="glnS"
                     /locus_tag="JN125_000533"
     CDS             complement(7613..9277)
                     /gene="glnS"
                     /locus_tag="JN125_000533"
                     /EC_number="6.1.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--tRNA ligase"
                     /protein_id="HAY8870417.1"
                     /translation="MSEAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGH
                     AKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWSGNVRYSSD
                     YFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEK
                     MRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCI
                     SDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNL
                     LVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRE
                     DLNENAPRAMAVIDPVKLVIENYQGEGEMVTMPNHPNKPEMGSRQVPFSGEIWIDRAD
                     FREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPADG
                     RKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPGAADDFLSVINPESLVIKQGFAEPSL
                     KDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE"
     gene            complement(9480..11426)
                     /gene="nagE"
                     /locus_tag="JN125_000534"
     CDS             complement(9480..11426)
                     /gene="nagE"
                     /locus_tag="JN125_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N-acetyl glucosamine transporter subunit
                     IIABC"
                     /protein_id="HAY8870418.1"
                     /translation="MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVAFIAQA
                     GGAIFDNLALIFAIGVASSWSKDSAGAAALAGAVGYFVLTKAMVTINPEINMGVLAGI
                     ITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIH
                     AGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINR
                     FYAGDGTAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGV
                     TEPLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAGFSFSAGAIDYALMYNLPAAS
                     QNVWMLLVMGVVFFAIYFVVFSLVIRMFNLKTPGREDKEDEIVTEEANSNTEEGLNQL
                     ATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDTMCKRLGASGVVKLNKQTIQVI
                     VGAKAESIGDAMKKVVARGPVAAASAEATPSTAAPVAKPQAVPNAVSIAELVSPITGD
                     VVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLETEKGAEI
                     VVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDD
                     FSGLIIKAQGHVVAGQTPLYEIKK"
     gene            11760..12560
                     /gene="nagB"
                     /locus_tag="JN125_000535"
     CDS             11760..12560
                     /gene="nagB"
                     /locus_tag="JN125_000535"
                     /EC_number="3.5.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008805656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HAY8870419.1"
                     /translation="MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGT
                     PMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAE
                     NINLLNGNAPDIDAECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIK
                     TLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEG
                     CVNHMWTISCLQLHPKAIMVCDEPSTMELKVKTLRYFNELEAENIKGL"
     gene            12620..13768
                     /gene="nagA"
                     /locus_tag="JN125_000536"
     CDS             12620..13768
                     /gene="nagA"
                     /locus_tag="JN125_000536"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HAY8870420.1"
                     /translation="MYALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQR
                     SLNGAILSPGFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLITT
                     SDELMKQGVRVMREYLARHPNQALGLHLEGPWLNLVKKGTHNPNFVRKPDAALVDFLC
                     ENADVITKVTLAPEMVPAEVISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLY
                     NAMPYITGREPGLAGAILDEADIYCGIIADGLHVDYANIRNAKRLKGDKLCLVTDATA
                     PAGANIEQFIFAGKTIYYRNGLCVDENGTLSGSSLTMIEGVRNLVEHCGIALDEVLRM
                     ATLYPARAIGVEKRLGTLAAGKVANLTAFTPDFKITKTIVNGNEVVTQ"
     gene            13777..14997
                     /gene="nagC"
                     /locus_tag="JN125_000537"
                     /gene_synonym="nagR"
     CDS             13777..14997
                     /gene="nagC"
                     /locus_tag="JN125_000537"
                     /gene_synonym="nagR"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator NagC"
                     /protein_id="HAY8870421.1"
                     /translation="MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQL
                     APASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITL
                     FDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDP
                     DSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILV
                     RVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQ
                     RVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFN
                     PQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSAIGAFALVKR
                     AMLNGILLQHLLEN"
     gene            15045..15797
                     /gene="nagD"
                     /locus_tag="JN125_000538"
     CDS             15045..15797
                     /gene="nagD"
                     /locus_tag="JN125_000538"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide monophosphatase NagD"
                     /protein_id="HAY8870422.1"
                     /translation="MTIKNVICDIDGVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNY
                     PSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKA
                     GFTITDVNPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNPDTHGRGFYPACGALC
                     AGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETI
                     LVLSGVSSLDDIDSMPFRPSWIYPSVAKIDVI"
     gene            16194..17858
                     /gene="asnB"
                     /locus_tag="JN125_000539"
     CDS             16194..17858
                     /gene="asnB"
                     /locus_tag="JN125_000539"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001724523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase B"
                     /protein_id="HAY8870423.1"
                     /translation="MCSIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNA
                     ILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEV
                     ILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVTS
                     EMKSLVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDWFDFDAVKDNVTDKNELRQALED
                     SVKSHLMSDVPYGVLLSGGLDSSIISAITKKYAARRVEDQERSEAWWPQLHSFAVGLP
                     GSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMS
                     RKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLLALHMYDCARANKA
                     MSAWGVEARVPFLDKKFLDVAMRINPQDKMCGNGKMEKHILRECFESYLPASVAWRQK
                     EQFSDGVGYSWIDTLKEVAAQQVSNQQLETARFRFPYNTPTSKEAYLYREIFEELFPL
                     PSAAECVPGGPSVACSSAKAIEWDEAFKKMDDPSGRAVGVHQSAYK"
     gene            18239..18315
                     /locus_tag="JN125_000540"
     tRNA            18239..18315
                     /locus_tag="JN125_000540"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:18273..18275,aa:Met,seq:cat)
     gene            18324..18408
                     /locus_tag="JN125_000541"
     tRNA            18324..18408
                     /locus_tag="JN125_000541"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:18358..18360,aa:Leu,seq:tag)
     gene            18432..18506
                     /locus_tag="JN125_000542"
     tRNA            18432..18506
                     /locus_tag="JN125_000542"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:18464..18466,aa:Gln,seq:ttg)
     gene            18541..18615
                     /locus_tag="JN125_000543"
     tRNA            18541..18615
                     /locus_tag="JN125_000543"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:18573..18575,aa:Gln,seq:ttg)
     gene            18631..18707
                     /locus_tag="JN125_000544"
     tRNA            18631..18707
                     /locus_tag="JN125_000544"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:18665..18667,aa:Met,seq:cat)
     gene            18756..18830
                     /locus_tag="JN125_000545"
     tRNA            18756..18830
                     /locus_tag="JN125_000545"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:18788..18790,aa:Gln,seq:ctg)
     gene            18868..18942
                     /locus_tag="JN125_000546"
     tRNA            18868..18942
                     /locus_tag="JN125_000546"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:18900..18902,aa:Gln,seq:ctg)
     gene            complement(19096..20271)
                     /gene="ubiF"
                     /locus_tag="JN125_000547"
     CDS             complement(19096..20271)
                     /gene="ubiF"
                     /locus_tag="JN125_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706550.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
                     hydroxylase"
                     /protein_id="HAY8870424.1"
                     /translation="MTNQPTEIAIVGGGMVGGALALGLAQHGFSVTVIEHAEPAPFVA
                     DSQPDVRISAISAASVSLLKGLGVWDAVQAMRCHPYRRLETWEWETAHVVFDAAELKL
                     PLLGYMVENTVLQQALWQALEAHPKVTLRVPGSLIALHRDNDLQELELKGGETIRAKL
                     VIGADGANSQVRQMAGIGVHAWQYAQSCMLISVQCENDPGDSTWQQFTPDGPRAFLPL
                     FDNWASLVWYDSPARIRQLQNMNMAQLQAEIAKHFPSRLGYVTPLAAGAFPLTRRHAL
                     QYVQPGLALVGDAAHTIHPLAGQGVNLGYRDVDALIDVLVNARSYGEAWASYPVLKRY
                     QMRRMADNFIMQSGMDLFYAGFSNNLPPLRFVRNLGLMAAERAGVLKRQALKYALGL"
     gene            20417..21841
                     /gene="miaB"
                     /locus_tag="JN125_000548"
     CDS             20417..21841
                     /gene="miaB"
                     /locus_tag="JN125_000548"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HAY8870425.1"
                     /translation="MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVL
                     LLNTCSIREKAQEKVFHQLGRWKLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDII
                     FGPQTLHRLPEMINSVRGDRSPVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKY
                     CTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGSTGSF
                     ADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNL
                     MGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSY
                     SFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGT
                     SRKSIMELSGRTENNRVVNFEGTPDMIGKFVDVEITDVYPNSLRGKVVRTEDEMGLRV
                     AETPESVIARTRKENDLGVGYYQP"
     gene            21955..23034
                     /locus_tag="JN125_000549"
     CDS             21955..23034
                     /locus_tag="JN125_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706552.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HAY8870426.1"
                     /translation="MFSFRRHTDKRNGLNIDTREITLEPADNARLLSLCGPFDDNIKQ
                     LERRLGIEINRRDNHFKLTGRPICVTAAADILRSLYVDTAPMRGQIQDIEPEQIHLTI
                     KEARVLEQSAESVPEYGKAVNIKTKRGVIKPRTPNQAQYIANILDHDITFGVGPAGTG
                     KTYLAVAAAVDALERQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFE
                     MLGFEKVEKLIERNVIEVAPLAYMRGRTLNDAFIILDESQNTTIEQMKMFLTRIGFNS
                     KAVITGDVTQIDLPRNTKSGLRHAIEVLADVEEISFNFFHSEDVVRHPVVARIVNAYE
                     AWEEAEQKRKAALAAERKREEQEQK"
     gene            23031..23498
                     /gene="ybeY"
                     /locus_tag="JN125_000550"
     CDS             23031..23498
                     /gene="ybeY"
                     /locus_tag="JN125_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014169133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HAY8870427.1"
                     /translation="MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQFQEESEVTIR
                     VVDTAESHSLNLTYRGKDKPTNVLSFPFEVPPGMEMSLLGDLVICRQVVEKEAQEQGK
                     PLEAHWAHMVVHGSLHLLGYDHIEDDEAEEMEALETKIMLALGYEDPYIAEKE"
     gene            23588..24466
                     /gene="corC"
                     /locus_tag="JN125_000551"
     CDS             23588..24466
                     /gene="corC"
                     /locus_tag="JN125_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308723.1"
                     /note="CorC(YbeX) belongs to the Cyclin M Mg2+ Exporter
                     (CNNM) family, and was characterized as belonging to a set
                     of three proteins, at least one of which must be present
                     for CorA to function; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM family magnesium/cobalt transport protein
                     CorC"
                     /protein_id="HAY8870428.1"
                     /translation="MSDDNSHSSDTISNKKGFFSLLLSQLFHGEPKNRDELLALIRDS
                     GQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSR
                     FPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRQAVVVPESKRVDRMLKEFRS
                     QRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALA
                     SIEDFNEAFGTHFSDEEVDTIGGLVMQAFGHLPARGETIDIDGYQFKVAMADSRRIIQ
                     VHVKIPDDSPQPKLDE"
     gene            24491..26029
                     /gene="lnt"
                     /locus_tag="JN125_000552"
     CDS             24491..26029
                     /gene="lnt"
                     /locus_tag="JN125_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HAY8870429.1"
                     /translation="MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGL
                     QALTFNRRPLQSAAIGFCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVVLAAYLS
                     LYTGLFAGVLSRLWPKTTWLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPL
                     KGLAPIMGVEAINFLLMMVSGLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQP
                     EKTIQVSMVQGDIPQSLKWDGDQLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEIN
                     QQPFLKALDGELRDKGSSLVTGIVDARLNKQNRYDTYNTIITLGKGAPYSYESADRYN
                     KNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPPLSVNGIELTAAICYEIIL
                     GEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRALELARPLLRSTNNGITA
                     VIGPQGEIQAMIPQFTREVLTTNVTPTTGLTPYARTGNWPLWVLTALFGFAAVLMSLR
                     ARKR"
     gene            complement(26107..27984)
                     /locus_tag="JN125_000553"
     CDS             complement(26107..27984)
                     /locus_tag="JN125_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001276742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HAY8870430.1"
                     /translation="MSASSVKPLNVQLPAITLILFALCIGIFCYLAQWMSYEEVDQSA
                     LIHLGANVAPLTLSGEPWRLLSSIFLHSSVSHLLMNMFAFLVVGGVAEQILGKWRLLI
                     TWLFSGVFGGLISACYALRDSDQIVISVGAFGAIMGIAGAAIATQLASGAGTYHKNQR
                     RVFSLLGMVALTLLYGARQTGIDNACHIGGLIAGGALGWLSARLSGQNRLVTEGGIIV
                     AGSLLLTGAIWLAQQQMDESVLQVRQSLREAFYPQEIEQERRQKKQQLAEERNALKET
                     LSAPVSREQASGDLLAEIADIHDMAISRDGNMLYAAIENTNSIVVFDLGQKKILHTFT
                     APIAKEKSVKHCGGCKDQGVRSLALSPDEKLIYATSFEANALSVINVATGEIIQSITT
                     GAHPDSLILSRDGTKAWVMNRTSNSVSAIDLVTYQHVADIPLEKYDGAGTSGKPGAWV
                     MALSPDERTLLVPGAGRGNIVRINTITHQKEDFPAGDARGTISAMRFRPENGEVIFAD
                     SQGISRISVGAQQASIMTQWCSRSVYSVEGISPDGQYLALVSYGLQGYVILLNINAGQ
                     IIGVYPASYVNHLRFSADGRKIFVMAKNGLIQMDRTRSLDPQAIIRHPQYGNVACIPE
                     P"
     gene            28439..29361
                     /gene="gltI"
                     /locus_tag="JN125_000554"
                     /pseudo
     CDS             28439..29361
                     /gene="gltI"
                     /locus_tag="JN125_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308721.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter
                     substrate-binding protein GltI"
     gene            29531..30271
                     /gene="gltJ"
                     /locus_tag="JN125_000555"
     CDS             29531..30271
                     /gene="gltJ"
                     /locus_tag="JN125_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter permease
                     GltJ"
                     /protein_id="HAY8870431.1"
                     /translation="MSIDWNWGIFLQQAPFGNTTYLGWIWSGFQVTIALSICAWIIAF
                     LVGSFFGILRTVPNRFLSGLGTLYVELFRNVPLIVQFFTWYLVIPELLPEKIGMWFKA
                     ELDPNIQFFLSSMLCLGLFTAARVCEQVRAAIQSLPRGQKNAALAMGLTLPQAYRYVL
                     LPNAYRVIVPPMTSEMMNLVKNSAIASTIGLVDMAAQAGKLLDYSAHAWESFTAITLA
                     YVLINAIIMLVMTLVERKVRLPGNMGGK"
     gene            30271..30945
                     /gene="gltK"
                     /locus_tag="JN125_000556"
     CDS             30271..30945
                     /gene="gltK"
                     /locus_tag="JN125_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter permease
                     GltK"
                     /protein_id="HAY8870432.1"
                     /translation="MYEFDWSSIVPSLPYLLDGLVITLKITVTAVVIGILWGTMLAVM
                     RLSSFAPVAWFAKAYVNVFRSIPLVMVLLWFYLIVPGFLQNVLGLSPKNDIRLISAMV
                     AFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLT
                     QGIVLFQDTSLVYVLSLADFFRTASTIGERDGTQVEMILFAGFVYFVISLSASLLVSY
                     LKRRTA"
     gene            30945..31670
                     /gene="gltL"
                     /locus_tag="JN125_000557"
     CDS             30945..31670
                     /gene="gltL"
                     /locus_tag="JN125_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020457015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate ABC transporter ATP binding
                     protein GltL"
                     /protein_id="HAY8870433.1"
                     /translation="MITLKNVSKWYGHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLI
                     KTVNGLEPVQQGEITVDGIVVNDKKTDLAKLRSRVGMVFQHFELFPHLSIIENLTLAQ
                     VKVLKRDKAPAREKALKLLERVGLSAHANKFPAQISGGQQQRVAIARALCMDPIAMLF
                     DEPTSALDPEMINEVLDVMVELANEGMTMMVGTHKMGFARKVANRVIFMDEGKIVEDS
                     PKDAFFDDPKSDRAKDFLAKILH"
     gene            31788..32723
                     /gene="rihA"
                     /locus_tag="JN125_000558"
     CDS             31788..32723
                     /gene="rihA"
                     /locus_tag="JN125_000558"
                     /EC_number="3.2.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine-specific ribonucleoside hydrolase
                     RihA"
                     /protein_id="HAY8870434.1"
                     /translation="MALPILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEK
                     TLRNVLRMLTLLNRTDIPVAGGAVKPLMRELIIADNVHGESGLDGPALPEPTFAPQNC
                     TAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSHPELHSKIARIVIMGGAMGLGNWT
                     PAAEFNIYVDPEAAEIVFQSGIPVVMAGLDVTHKAQIHIEDTERFRAIGNPVSTIVAE
                     LLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERWVGVETQGKYTQGMTVV
                     DYYYLTGNKPNATVMVDVDRQGFVDLLADRLKFYA"
     gene            32807..34477
                     /locus_tag="JN125_000559"
     CDS             32807..34477
                     /locus_tag="JN125_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HscC"
                     /protein_id="HAY8870435.1"
                     /translation="MDNAELTIGIDLGTTNSLIAVWKDGAAQLIPNKFGEYLTPSIIS
                     MDENNHILVGKPAVSRRTSHPDKTAALFKRAMGSNTNWRLGSDTFNAPELSSLVLRSL
                     KEDAEEFLQRPIKDVVISVPAYFSDEQRKHTRLAAELAGLNAVRLINEPTAAAMAYGL
                     HTQQNTRSLVFDLGGGTFDVTVLEYATPVIEVHASAGDSFLGGEDFTHMLVDEVLKRA
                     EVARTTLNESELAALYACVEAAKCSNQSPLHIRWQYQEETRECEFYENELEDLWLPLL
                     NRLRVPIEQALRDARLKPSQIDSLVLVGGASQMPLVQRIAVRLFGKLPYQSYDPSTIV
                     ALGAAIQAACRLRSEDIEEVILTDICPYSLGVEVNRQGVSGIFSPIIERNTTVPVSRV
                     ETYSTMHPEQDSITVNVYQGENHKVKNNILVESFDVPLKKTGAYQSIDIRFSYDINGL
                     LEVDVLLEDGSVKSRVINHSPVTLSAQQIEESRTRLSALKIYPRDMLINRTFKAKLEE
                     LWARALGDEREEIGRVITDFDAALQSNDMARVDEVRRRASDYLAIEIP"
     gene            complement(34537..35988)
                     /gene="djlC"
                     /locus_tag="JN125_000560"
     CDS             complement(34537..35988)
                     /gene="djlC"
                     /locus_tag="JN125_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone DjlC"
                     /protein_id="HAY8870436.1"
                     /translation="MKTCWQILEIESTTQIDIIRQAYLARLPLCHPETDPQGFKALRQ
                     AYEEALRLAVNPVEEADDEEKDAAAEHEILRAFRTLLDSESDRFQPSAWQKFIQQLNT
                     WNMEDVDQLRWPLCAIAIEARYLSLNCASLLAERLNWHSFNDSEGMDEEEREAFLEAI
                     QAGDCFDFLSLLEYPVALQNQTVEYYFALERCCRYHPDYVTAFLAMEGPWFIPDDAKL
                     HRKLLRWYSSVQTGMAELIPVAKQWQMEEPESEDARYYLCAQRLYCGEGESLLADLCA
                     YRESYPSTQADNLLLQWSKRHCPDYFALLVMVIEAQSMVDAQSKPLKYVPGESARTRL
                     LWAEILHSGKLSPLGQSFIESLFFKRKAWAWWKSRVGSETEQDSPLLDLYRVAEQVVL
                     EAFPKQEMLARLNTRLEGGDAHPLEAIITRMLLTKVKLEPEDEDVDEPTPENHEEKND
                     EDEKPQSITSIIKISLTVLVIGYALGKIAMLFS"
     gene            complement(35985..36692)
                     /locus_tag="JN125_000561"
                     /pseudo
     CDS             complement(35985..36692)
                     /locus_tag="JN125_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415181.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1266 domain-containing protein"
     gene            complement(36773..37843)
                     /locus_tag="JN125_000562"
     CDS             complement(36773..37843)
                     /locus_tag="JN125_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001154804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polynucleotide modification protein"
                     /protein_id="HAY8870437.1"
                     /translation="MNTAHLSFECVVLLAERLRWLQEENVGEIDEEELESFLYAIAKG
                     NVFNFQTILHLPVAVQNDTIDFYQMFARIWSSHPEWLTLYLAQHRAVIIPDDAKLHRN
                     LLRWYSAGRLDIPELLDYARSWREAEPDNEDARYYEYAQRVYCGEGESLLAELCDYWR
                     EYPSTQADALILQWCRQHRVDYYPLVVMMIEARELVNDQGKQLLYVPGDSARTRFHLY
                     EILSDEKLSALGRSLVEMVLHKGRKPRISLTRDTEHLLWPLYLVAKQLVQASQPTEES
                     LMPIVSRLDAEDRCPLEALIIRRLLIQAANFTEKQTVEPEPQPQPMPVDDGGPGCLGV
                     IKIIFYIFIFAGLIGKILHLFG"
     gene            complement(37922..38200)
                     /locus_tag="JN125_000563"
     CDS             complement(37922..38200)
                     /locus_tag="JN125_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000786566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="J domain-containing protein"
                     /protein_id="HAY8870438.1"
                     /translation="MKNCWKILDIEETTDVDIIRRAYLALLPSFHPETDPQGFKQLRQ
                     AYEEALRIAQSPAKSVWQPEEYEVAEHEILLAFRALLASDSERFLPSA"
     gene            complement(38197..>38318)
                     /locus_tag="JN125_000564"
     CDS             complement(38197..>38318)
                     /locus_tag="JN125_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1266 domain-containing protein"
                     /protein_id="HAY8870439.1"
                     /translation="NDMFYQLFASDDAYYPTLSWQPLADYPTCPETLKDMSDL"
BASE COUNT         9474 a         9875 c         9577 g         9392 t
ORIGIN      
        1 gattgttcag gttgggcgca tgcagtcagc agtaatgtgg cggtaattag tgacactatg
       61 acgaccagac tcctgttggt cttcattggg atttccttga gctactcagt ttgttgacaa
      121 agtgttcgtt gtttttgccg gatgcggcgt gaacgcctta tccggcctac aaaatctcgt
      181 aaattcaata tattgcacca tcctcgtagg cctgataagc gtagcgcatc aggcaattct
      241 gtgtttgtca tacgtaaaaa agggcgatct tccgaccgcc ctttttctta tttaatgtgt
      301 ttacgcgttt ttcagaactt cgctaacaat ctcaaccgct tctttctcaa tctgcttgcg
      361 atgttcttca ccgaggaagc tttcgcagta gatcttatat gcgtcttccg tgcctgacgg
      421 acgcgcggcg aaccagccgt tgtcagtcat cactttcaga ccgccgatag aagcaccatt
      481 gcccggtgcc gccgtcaggc gcgcggtgat cgggtcgcct gccagggtgc tggcgctcac
      541 catttccgga gacagcttag acagcgccgc tttttgtgcg gaagtcgcag ctgcctgcaa
      601 acggttgtag ctcggcgcac caaagcgttt tgccagttcg ttgtagtgtt cctgcgggtt
      661 cttaccggtg acagcggtga tttccgccgc cagcagacac atgatgatgc cgtctttgtc
      721 ggtggaccac ggcgtgccgt cgaaacgcag gaaggaagcc cctgcgctct cttcgccgcc
      781 aaagccgaag ctgccgtcga acagaccatc aacaaaccat ttgaaaccta ccgggacttc
      841 taccagcttg cggcccaagt cattgaccac acggtcgatc atcgcagaag aaaccagcgt
      901 tttaccgaca gcaacatctt tgccccactg cggacgatgc tggaacaggt agttgatcgc
      961 caccgccagg tagtggttcg gattcatcaa acctgccgga gtgacgatac cgtgacggtc
     1021 ataatccggg tcgttagcaa acgccagatc gaacttatca cgcagtgcca gcaggcccgc
     1081 catcgcacac tcggaggagc agtccatacg gatcgcgccg tctttatcaa ggtgcataaa
     1141 gcggaaggtt tgatcgacct gatcgttaac gatggtcagg ttgaggttgt aatactcgcc
     1201 aatacgcttc cagtattcga taccggaacc gcccagcgga tcaacgccca gcgtcaggcc
     1261 cgctttctga atcgccgcca tatcaacgat atcggccaga ccttccacaa acggctgcac
     1321 cagatcctgc tctttcacat gaccggatgc catcgcttcg tcgagggaga tacgcttcac
     1381 gcctttcagg ccatcggcca gcagtgcgtt ggccctgtct tccaccactt tggtgacgtt
     1441 ggtatcagcc gggccaccat ttggcggatt gtacttgata ccaccatctt ccggcgggtt
     1501 atgggacggt gtaatcacga taccgtctgc cagcggacca ccttttttat tgtgaaccag
     1561 gatggcattg gaaacggcag gcgttggagt gaagccattg ttttcctgca caatgacatc
     1621 aacgccgttc gctgccagca cttccagtac ggaaatgaac gcaggctcgg acagggcgtg
     1681 agtatcttta cccacatagc aagggccagt gatgccgttt ttcgcacgtt cttcagcaat
     1741 tgcctgagcg atcgccagaa tgtgcggctc gttaaagctg tggcgcgctg cactgccacg
     1801 gtgaccggaa gtaccgaatt tcaccgcgtg ctccgcattc cctgcttctg gtttcagtac
     1861 ataatattgc gccgtcagtt gggcgacgtt aatcaaatca ctctgttgtg caggttggcc
     1921 tgcacgattg tggattgcca ttgctttgtc ctttgtctgc aacgttttag atagttccgc
     1981 aaaccttctc aatcaattcc gccgggaatt gcatcgactg catgatgtgt tcgatcatgc
     2041 tgcatttacg gccggtgttg gtgttggtga tcacccaata cggcgtgcct ggcacatgtt
     2101 tcggcttggt ctgattacca tttttcagca gcgtttgttc atctgccgca aagtaaacgc
     2161 gtgtacgacc gtgcaacgat tccgttgctt cggcaaacgc ctgggcgtca agagaatata
     2221 gtgtagacaa cagcagcata aagcgattga ccgctcgctt ttgctctgcg tattcgtcag
     2281 aaagcagaag ttcacgcatt gcgcgaacct tgtctttaat cgttttgacc ggcttcgctt
     2341 cgacgatagc aggtgacgca acgcgaacct ctttcgtcac cggagcagca ggctgtgatg
     2401 cggcggaaaa tttcaacata cgccgtaaaa tgtcggatgc gctctcgccg atatgcttag
     2461 tgtggctggc aatatagctg tagagttcat catcaacttc aatcgttttc atcttaatcc
     2521 agtgcagtgt cttagctgaa tacaagtcgc caagagtata tgaataaatc ccggcagcgg
     2581 atagcgtcaa gcctggcttg cagaaaaact cggaataaac cttatttgtt gcagccctgt
     2641 ggcacaatgg tcaacataat accctaacac gacaacgcga aaaaaagaac tttgccatga
     2701 aattgaatat ccgcgcgcaa actgcacaaa accagcacaa taattctccc atcgttcttg
     2761 tccatggtct gtttggtagc ctcgacaacc ttggcgtact ggctcgcgat ctggtaaacg
     2821 atcacaatat catccaggtt gatatgcgta accacggtct ttcaccgaga gatccggtaa
     2881 tgaattaccc ggcgatggcg caggatcttg ttgatactct ggatgcacag cagatcgaca
     2941 aagcaacatt tatcggtcac tccatgggcg gtaaagcggt aatggcactt acggcactgg
     3001 cccgcgatcg catcgataaa ctggtggcga tcgatatcgc accggtcgac tatcacgtac
     3061 gccgtcatga tgagattttc gcggctatca acgcggtcag tgaatcggac gcacaaactc
     3121 gccagcaagc agcagcaata atgcgccagc atcttaatga agaaggggtg attcagtttc
     3181 tgttgaaatc ttttgttgac ggggagtggc gctttaacgt gccggtattg tgggatcagt
     3241 atccgcatat tgtgggttgg gagaaaatcc cggcatggga tcaccctgcc ctgtttatcc
     3301 ctagcggcaa ttctccgtat gttagcgagc agtaccgtga tgatttactg gcacaatttc
     3361 cacaggcacg ggcgcatgtg attgcaggcg cgggtcactg ggtccatgct gaaaaaccgg
     3421 atgcggtatt acgcgctatc cgtcgctatc tcaatgatta acgcaactga ttaaaaaccc
     3481 agcgtccgcg tcgctttccg cgcgtgggcg ttggcgtgac tcatcgcgct gatgtattat
     3541 ggcgcgctat ccatccgggc agaggcctgg ctgattgttt cccccgaagt caccaagatc
     3601 atggccaaag aacaaacgga ccgtacgaca ttagatctgt tcgcgcacga gcgtcgaccg
     3661 ggacgaccga aaactaatcc gctttcgcgc gatgaacagc tgcgtattaa taaacgcaac
     3721 cagctaaaac gcgacaaagt acgtggcctt aagcgtgtcg aactgaagct gaacgcggaa
     3781 gctgtcgagg cgctgaacga gctggcggag tcgcgcaata tgagccgtag cgaactgatc
     3841 gaagagatgt taatgcagca actggcggcg ctgcgtagtc agggcatcgt ttaaatttcc
     3901 actttcatgt agcacagtgt gcagtcctgc tcgtttgctg attccgcaag actgcctgtt
     3961 ctgctatgat tgcctttatc cgtgggcaat tccccccccc catttcaata agtttcaaga
     4021 ggttatttca ctcatggcta tcactggcat ctttttcggc agcgacaccg gtaataccga
     4081 aaatatcgca aaaatgattc aaaaacagct tggtaaagac gttgccgatg tccatgacat
     4141 tgcaaaaagc agcaaagaag atctggaagc ttatgacatt ctgctgctgg gcatcccaac
     4201 ctggtattat ggcgaagcgc agtgtgactg ggatgacttc ttcccgactc tcgaagagat
     4261 tgatttcaac ggcaaactgg ttgcgctgtt tggttgtggt gaccaggaag attacgccga
     4321 atatttctgc gacgcattgg gcaccatccg cgacatcatt gaaccgcgcg gtgcaacgat
     4381 cgttggtcac tggccaactg cgggctatca tttcgaagca tcaaaaggtc tggctgatga
     4441 cgaccacttt gtcggtctgg ctatcgacga agaccgtcag ccggaactga ccgctgaacg
     4501 tgtagaaaaa tgggttaaac agatttctga agagttgcat ctcgacgaaa ttctcaatgc
     4561 ctgatgtgat gcggcgtaga ctcatgtcta cgccgtatta atagataatg ccaatcaaaa
     4621 taattgctac aaatttgtaa cttttgctgt tgtacctgta caatgtcccg gtgttcaagt
     4681 ggccttgccg ttgtaaatgt aagctgtgcc acgtttttat taacaatatt tgccagggac
     4741 ttgtggtttt catttaggcg tggcaattct ataatgatac gcattatctc aagagcaaat
     4801 tctgtcactt cttctaatga agtgaaccgc ttagtaacag gacagattcc gcatgactga
     4861 taacaatacc gccctaaaga aagctggcct gaaagtaacg cttcctcgtt taaaaatcct
     4921 ggaagttctt caggagccgg acaaccatca cgtcagtgcg gaagatttat acaaacgtct
     4981 gatcgatatg ggtgaagaaa ttggtctggc tacggtatat cgcgtactga accagtttga
     5041 cgacgctggt atcgtcaccc gccacaattt tgaaggcggt aaatccgtat ttgaactgac
     5101 acagcaacat caccacgatc acctgatctg cctcgactgc ggcaaggtta tcgaatttag
     5161 tgatgattcc atcgaagcgc gtcagcgtga aattgccgca aaacatggca ttcgcctgac
     5221 taaccacagt ctctatcttt acggtcactg tgccgaaggc gattgccgcg aagatgaaca
     5281 tgcgcacgaa ggcaaataag ccagcctgaa tgagaaaaag ccaacctgcg ggttggcttt
     5341 tttatgcaag ggaaataaga aaagcgagag ttacagctct cacttatttg ttattactgc
     5401 gaatttcctg ccaaacttta tcacaatcgg ctttcaccgc ctgatcattt ccggtttgcg
     5461 ttgcacgcag acactgctga taatccagta cgcggacact ttcctggtcg gcaaaatgct
     5521 gatgttgttt ctctttcttc agcacgttta acacgctctg gcaggcttca attttttctg
     5581 gcgaaccttg tgcggtgttg atacaggcgc tgtatgcctc tttcagacga ctgtcttcct
     5641 gtggcgcggt tgattgcgca caagctacca gccccgatgc cattatggcg atgagaatca
     5701 gttttttcat agcaaattcc tcaaacgtgc ggcaggcaca aaacctgccg cgtcgggcat
     5761 cagaagatgg tgaatggtgc gattaccata aatttcacgt cacgctcatc ctggaagatg
     5821 ttgccgtaac caccgcccca gcttgggatg tcggagtggt tgtcgtattc ggtgaagtgc
     5881 agtttgaaca tcgtgccttt ggcgcgaccg tcctgaatgg tgtagaccgc atccaggctg
     5941 tatgcagact cttcaatagt ccggtttttg tcgtagtacg catccggatt gctctgccag
     6001 gtcgcaggtt tagcatccca tgcgtaaacg taggaagcgc cgatggcgaa gcctggaaga
     6061 ttccagtttt tcaggtcata catcgcaccg aagaagaccg ctttttcgcc gttagcgttg
     6121 aagtcggaac ggttatccca ccagatatcc aggcggccgt tggaggaagc gtaggttgga
     6181 gtcatacgtt gcaggaagta tccctgctga ccgtcagcct taacccaggt gccttcgagg
     6241 cgcaaatcca ctacgtcagc cgcccggtaa ccaaaggtca acgcttgcag ccaggcggtg
     6301 ccgtcataaa ggtcgttgac gctgcgatcg tcaactttat cgcgcgtacc atagaactgg
     6361 tagctggtgg ttaacgggct accggcgata tcaaatttgt agctggcttt ggcaaaatat
     6421 tgatcgatat acccttccgc ctgaccaaat gccgcttcca gtacgaagtt atttttgaag
     6481 tcgtatttcg ccccaaggga gtgcagataa tcaactttgg tggttttatc gttctgataa
     6541 aactcatcca tttccagatg ccacggcgct ttgtattcgt tggtccacat gtaggagaaa
     6601 ctcaacgcac cagcatcgcc gtaatcaaaa ttcgccccgg cttccgcccc ctgataagta
     6661 cctggcataa agctccagtg cggcgctaac agcgtttgac cagttggctg aatgtaacct
     6721 gccctcgccc aaaccggacc gtatttaaat ttggccgcag ctttatacag gcttataccg
     6781 cttttgtcgc cggaccagtc ttcgtcatag gctttattac tttttgaaaa cgcgatttcg
     6841 ttcgggtggg agctgtcgcc gttttccgcc atttcaatcg ccgtaaacac agcaatatca
     6901 aggccgaaca tatcagcagc ataaccggac tgaaaatcga ggttggcatt ccaggtggag
     6961 tgagaaaggt tggttttgta tttgtcgccg tcggtaacat ctttacggtc gcgttcacgc
     7021 tgccagtaat atataccgcc ggttaaggtt gaatcgtcga tgaatccttc ggcgcgagcc
     7081 tccggcattg ccataaagcc cgacattgct gtaacaccgg cgatagccag cgccagcgta
     7141 ctacgtttgc cactaaacgt acgcatgggt taatcctctt tgacgtataa attgctgcac
     7201 caaaggtgaa cagcgaaaaa aataaaaatt aaaaaagtag cattgagaaa agtctcgctg
     7261 actacaggaa tagactattt ttcgcgacgc gaattatcaa tctctttctg taaccagaat
     7321 gtaagaacat gagcaaccgc acatattttg atgatttttg ttacaaggct taagtttgcg
     7381 gttgaaaggc ttgcagaaga ataaaagcgt aaatttccag caagatgaaa gcggttacat
     7441 tttatttaat tatggtttgt gattttaaat ttattttatg gataaattgc gaagcggaat
     7501 taattcgcga agaaaagcag aaaaaacgcc gcagagtacg gcgtttggga ttgtttgcta
     7561 tttcttgccg gatgcgacgt aaatgcctca cccggcctgg tagaacttaa aattactcgc
     7621 ctactttcgc ccaggtatca cgcagcccaa cggtgcggtt aaataccggt ttttccgctg
     7681 tggaatggcg gctgtcgagg cagaagtaac cttcacgctc aaactggaat gctttacccg
     7741 caaccgcatc tttcagcgac ggttcagcaa agccctgttt gatcaccagc gattccgggt
     7801 taatcaccga caggaaatca tccgcagcac ctgggttagg cacgctgaac agacggtcgt
     7861 acagacggat ttcaaccggc agcgcatgtg ccgcgctcac ccagtgaata acacctttga
     7921 ctttacgacc atctgccgga tctttgctta aggtgtcggc gtcataagta cagaagatgg
     7981 tggtgatatt gccttcggca tctttctcca cgcgttctgc cttaatgacg taagcattac
     8041 gcagacgcac ttctttaccc agcaccagac gtttgtactg cttgttagct tcttcgcgga
     8101 aatcggcgcg atcgatccaa atctcaccgc taaacggcac ctggcggcta cccatttccg
     8161 gtttgttcgg atggttcggc atggtaacca tttcgccttc gccctgatag ttttcgataa
     8221 ccagtttcac cggatcgata accgccattg cgcgcggggc gttttcgttg agatcttcac
     8281 ggatgcagga ttccagcgac gccatctcaa tggtgttgtc ctgcttggtc acgccgatgc
     8341 gtttgcagaa ctcacgaata gaagcagcag tgtaaccacg acgacgcaga ccggaaatgg
     8401 tcggcatacg cgggtcatcc cagccttcaa cgtgcttgtc ggtcaccagc aggttcagct
     8461 tacgcttgga catcacagtg tattccagat tcaggcgcga gaattcgtac tggcgcgggt
     8521 gaacaggaat ggtgatgttg tccagcaccc agtcgtacag gcgacggttg tcctggaact
     8581 caagcgtaca cagagagtgc gtaatacctt ccagggcatc gctgatgcag tgggtgaagt
     8641 cgtacatcgg gtagatgcac cacttgttgc cagtctggtg gtgttcagca aatttaatgc
     8701 ggtacagcac cggatcgcgc atcacgataa acggtgaagc catgtcgatt ttcgcacgca
     8761 ggcaggcttt accttcttca aaaccaccgg cacgcatttt ttcgaacagc gccaggttct
     8821 cttcaacgct gcggtcgcgg tacgggctgt ttttacccgg ttgcgtcagg gtgccgcggt
     8881 attcgcggat ctgttccggc gtcagttcat caacgtacgc caggccttta ttgatcagtt
     8941 cgatcgcata ggcgtggagc tgatcaaaat aatcggagga gtaacggacg ttaccagacc
     9001 agtgaaaacc taaccactct acgtcgtttt tgatcgactc aacatactcg atatcttctt
     9061 ttaccgggtt agtgtcgtcg aaacgcaggt tgcactggcc tttatagtcc tgggcgatcc
     9121 cgaagttcag gcagatagat ttcgcatggc caatatgcag atagccattc ggctccggcg
     9181 ggaaacgggt gtgtactgtg gtgtgcttac cactggccag atcttcatcg atgatctgac
     9241 ggataaagtt agtcgggcgg gcttctgcct cactcatcgt ggattcctca aagcgtaaac
     9301 aacgtataac ggcgtatgat cttataagcg ggacaggctg acaactgtta gttttttaaa
     9361 attgataatc taacaaggat tatggggatg attgatgaaa aaaaaagcgg cagagaagat
     9421 ctccaccgct tgtcattgtt ggatgcgacg ctcaagcgtc gcatcaggca taaagcagat
     9481 tactttttga tttcatacag cggtgtttga cccgccacaa catggccctg agctttaatg
     9541 atcaagccac tgaaatcgtc gatattgctg caaaccaccg ggctaatcat cgagcgggcg
     9601 ttagcgttca ggtaatccag atccatttcc agaatcggtt gccctgcgct tacctgcgca
     9661 ccctcttcca ccagacgttt aaagccttta ccttccagcg ctacggtgtc gatacccata
     9721 tggacgacga tctccgcgcc tttttcggtt tccaggcaga acgcgtggtt ggtgttgaag
     9781 attttcacga ttgtccctgc ggctggtgat acgacgattt tatctgtcgg tttcaccgcc
     9841 acaccgtcac ccaccgcttt gctggcgaat gcttcgtcag gaacctgatc cagtgccacg
     9901 acatcaccgg taatcggcga taccagctcc gcgatagata ccgcgtttgg tacagcctgc
     9961 ggttttgcta caggcgcggc agttgacgga gttgcttcag ctgacgcagc ggctaccgga
    10021 ccacgggcaa cgactttctt catcgcatcg ccgatggatt ctgctttcgc gccaacaatc
    10081 acctgaatag tctgtttgtt cagtttcact acaccagaag cacccagacg tttacacatc
    10141 gtatcgttga cgcgggcaga gtcagccacg gtcaggcgca gacgggtgat acaggcgtca
    10201 attgctttca ggttgtcagt gccaccaacc gcagcaatat agttggtcgc cagttgattg
    10261 aggccttctt cagtgttgct gttggcttct tcagtaacga tctcgtcttc tttatcttca
    10321 cgacccggcg ttttcaggtt gaacatgcgg ataaccaaac tgaacaccac gaagtagata
    10381 gcgaagaaga caacacccat caccagcagc atccagacgt tctggctggc ggccggcaga
    10441 ttatacatca acgcgtagtc gatagccccc gcagagaaag agaagccagc atggataccc
    10501 agcagtgttg ccacaaacag gctgataccg gtcagcagtg cgtgcaggag gtacagcagc
    10561 ggtgcaagga acatgaacag gaattccagc ggctcagtca caccggtcag gaacgcagta
    10621 acagcaacag aaagcagcat cccgccaacc atcggacgac gctctttcgg tgctgcgaag
    10681 tacatcgcca gcgccgcacc cggcagaccg aacatcataa tcgggaagaa gccggacatg
    10741 aacatccccg cggtgccgtc accggcatag aagcggttga tatcaccgtg gaaaaccgta
    10801 cccgccgcgt tggtgaattc accaatctgg aaccaggcga tggtgttcag cacctgatgc
    10861 agaccggttg ggatcagcag acggttgatg aaaccaaaga taccggaacc cagcgcgccc
    10921 gcagaaacga tccactcgcc tcctgcatgg atagcgtgct gtaccggcgg ccagacgtaa
    10981 ccaaaaatgg ccgccagcac caggcagaag aagccggtgg caatcggcac aaagcgtttg
    11041 ccgccgaaga agctcaggaa gtccggcagt ttaatatcgg accaacggtt ataggctgcg
    11101 ccaccaacca gaccggtaat gatacccgcc agtacaccca tgtttatttc tgggttgatg
    11161 gtcaccatcg ctttggttaa cacaaagtaa cctaccgcac ccgccagcgc cgccgcacct
    11221 gcgctgtctt tcgaccagct ggatgccaca ccgatggcga agattaatgc gaggttatca
    11281 aaaatcgcac cgcccgcctg ggcaataaac gcaacgttaa gtaaatctgg ctgaccgaat
    11341 cgcagcaaca gtgccgccac cggcagcacc gcgataggga gctgtaacgc cctaccgagt
    11401 cgctggaaaa aacctaaaat attcatctta ttccccctac gagaacccta tttggctcgt
    11461 ttaaagccgt atttttattt tgctgcaaat tgtactgccg atgttctgta atcagattgt
    11521 tagatcatct gctacagagt gtgtgaaaat ttaattcgta tcgcaaatta aacgcgtgtc
    11581 ttttgtgagt tttgtcacca aatatcgtta tcatcactcc cttttactgg ctaaaccaga
    11641 aaacttattt tatcattcaa aaaaatcagg tcggattgac gcctgtctgc gcaaatccag
    11701 gttacgctta aagatgccta atccgccaac ggcttacatt ttacttattg aggtgaataa
    11761 tgagactgat ccccctgact accgctgaac aggtcggcaa atgggctgct cgccatatcg
    11821 tcaatcgtat caatgcgttc aaaccgactg ccgatcgtcc gtttgttctg ggcctgccaa
    11881 ctggcggcac gccgatgacc acctataaag cgttagtcga aatgcataaa gcaggccagg
    11941 tcagctttaa gcacgttgtc accttcaaca tggacgaata tgtcggtctg ccgaaagagc
    12001 atccggaaag ctactacagc tttatgcacc gtaatttctt cgatcacgtt gatattccag
    12061 cagaaaacat caaccttctc aacggcaacg ccccggatat cgacgccgaa tgccgccagt
    12121 atgaagaaaa aatccgttct tacggaaaaa ttcatctgtt tatgggcggt gtaggtaacg
    12181 acggccatat tgcatttaac gaaccggcgt cttctctggc ttctcgtact cgtatcaaaa
    12241 ccctgactca tgacactcgc gtcgcgaact ctcgtttctt tgataacgat gtcaatcagg
    12301 tgccaaaata tgccctgact gtcggtgttg gtacattgct ggatgccgaa gaagtgatga
    12361 ttctggtgct gggtagccag aaagcactgg cactgcaggc tgcagttgaa ggttgcgtga
    12421 accacatgtg gaccatcagc tgtctgcaac tgcatccaaa agcgatcatg gtgtgcgatg
    12481 aaccttccac catggagctg aaagttaaga ctttaagata tttcaatgaa ttagaagcag
    12541 aaaatatcaa aggtctgtaa ttgttatccc tgccctggct ccttgctcag ggcaatattt
    12601 tttaaaatcg ggggtcagaa tgtatgcatt aacccagggc cggatcttta ccggccacga
    12661 atttcttgat gaccacgcgg ttgttatcgc tgatggcctg attaaaagcg tctgtccggt
    12721 agcggaactg ccgccagaga tcgaacaacg ttcactgaac ggggccattc tctcccccgg
    12781 ttttatcgat gtgcagttaa acggctgcgg cggcgtacag tttaacgaca ccgctgaagc
    12841 ggtcagcgtg gaaacgctgg aaatcatgca gaaagccaat gagaaatcag gctgtactaa
    12901 ctatctgccg acgcttatca ccaccagcga tgagctgatg aaacagggcg tgcgcgttat
    12961 gcgcgagtac ctggcaagac atccgaatca ggcgttaggt ctgcatctgg aaggtccgtg
    13021 gctgaatctg gtaaaaaaag gcacccataa tccgaatttt gtgcgtaagc ctgatgccgc
    13081 gctggtcgat ttcctgtgtg aaaacgccga cgtcattacc aaagtgaccc tggcaccgga
    13141 aatggttcct gcggaagtca tcagcaaact ggcaaatgcc gggattgtgg tttctgccgg
    13201 tcactccaac gcgacgttga aagaagcgaa agccggtttc cgcgcgggga ttacctttgc
    13261 cacccatctg tacaacgcga tgccgtatat taccggtcgt gaaccgggcc tggcgggcgc
    13321 gatcctcgac gaagctgaca tttattgcgg tattatcgct gatggcctgc atgttgatta
    13381 cgccaacatt cgtaacgcta aacgccttaa aggcgacaaa ctgtgtctgg ttaccgacgc
    13441 caccgcgcca gcaggtgcca acattgaaca gttcattttt gcgggtaaaa caatatacta
    13501 ccgtaacgga ctttgtgtgg atgagaacgg tacgttaagc ggttcatcct taaccatgat
    13561 tgaaggcgtg cgtaatctgg tcgaacattg cggtatcgca ctggatgaag tgctgcgtat
    13621 ggcgacgctc tatccggcgc gtgcgattgg cgttgagaaa cgtctcggca cactcgccgc
    13681 aggtaaagta gccaacctga ccgcattcac acctgatttt aaaatcacca agaccatcgt
    13741 taacggtaac gaggtcgtaa ctcaataaga gaaagtatga caccaggcgg acaagctcag
    13801 ataggtaatg ttgatctcgt aaaacagctt aacagcgcgg cggtttatcg cctgattgac
    13861 cagtacgggc caatctcgcg gattcagatt gccgagcaaa gccagcttgc ccccgccagc
    13921 gtaaccaaaa ttacgcgtca gcttatcgaa cgcgggctga tcaaagaagt tgatcagcag
    13981 gcctccaccg ggggccgccg cgctatctcc atcgtcaccg aaacccgcaa tttccacgca
    14041 atcggcgtac ggcttggtcg tcacgacgcc accatcaccc tgtttgatct cagcagcaaa
    14101 gtgctggcag aagaacatta cccgctgccg gaacgtaccc agcaaacgct ggaacatgcc
    14161 ctgttgaatg ccattgctca gtttattgat agctaccagc gcaaactgcg cgagctgatc
    14221 gcgatttcgg tgatcctgcc agggcttgtt gacccggaca gcggcaaaat tcattacatg
    14281 ccgcatattc aggtagaaaa ctgggggctg gtagaagctc tggaagaacg ttttaaagtg
    14341 acctgtttcg ttggtcacga tatccgtagt ctggcgctgg cggagcacta cttcggtgca
    14401 agtcaggatt gcgaagactc cattctggtg cgtgtccatc gcggaaccgg ggccgggatt
    14461 atctctaacg ggcgcatttt tattggccgc aacggtaacg tcggtgaaat tggccatatt
    14521 caggtcgaac cgctgggtga acgctgccac tgcggcaact ttggctgcct ggaaactatc
    14581 gccgccaacg ctgccattga acaacgggtg ttgaatctgt taaagcaggg ctaccagagc
    14641 cgcgtgccgc tggacgactg caccatcaaa actatctgca aagccgcgaa caaaggcgat
    14701 agtctggcgt cggaagtaat tgagtatgtc ggtcgtcatc tgggtaaaac catcgccatt
    14761 gctatcaact tatttaatcc gcaaaaaatt gttattgccg gtgaaatcac cgaagccgat
    14821 aaagtgctgc tccctgctat tgaaagctgc attaataccc aggcgctgaa ggcgtttcgc
    14881 actaatctgc cggtggtacg ttctgagctg gatcaccgct cggcaatcgg cgcttttgcg
    14941 ctggtaaaac gcgccatgct caacggtatt ttgctccagc atttgctgga aaattaatgt
    15001 gcttttatag tggcgcttat tgttgtcaat attctgggta gtccatgacc attaaaaatg
    15061 taatttgcga tatcgacggc gtgctgatgc acgataacgt cgccgtaccg ggtgcagcgg
    15121 aatttttgca cgggattatg gataaaggcc tgccgctggt gttgctgacc aactatcctt
    15181 cgcagactgg gcaagatctg gcgaaccgct ttgccaccgc aggtgtcgat gtacctgaca
    15241 gcgtgtttta tacctctgcg atggcgactg ccgatttcct gcgtcgccag gaaggcaaga
    15301 aagcgtatgt ggtgggcgaa ggcgcactga ttcatgaact gtacaaagcc ggtttcacta
    15361 ttaccgatgt gaaccctgat ttcgtgattg ttggcgaaac gcgttcctac aactgggaca
    15421 tgatgcataa agcagcctat ttcgtcgcta acggtgcacg ttttatcgcc accaatccgg
    15481 acacccacgg gcgcggtttt tatcccgcgt gtggcgcgtt gtgtgcaggc atcgaaaaaa
    15541 tctccgggcg taaaccgttc tatgttggta aaccgagtcc gtggatcatc cgcgcggcat
    15601 taaacaaaat gcaggcgcat tcggaagaaa cggtgattgt cggcgataac ctgcgtaccg
    15661 atattctggc gggcttccag gcaggtctgg aaacgattct ggtgctttct ggtgtttcat
    15721 cgctcgacga tatcgacagt atgccgttcc gcccaagctg gatttacccg tcggtcgcta
    15781 aaatcgacgt tatctgaata gcaaccacgt ccgcggacgt ggttggctct gatgacaaac
    15841 gccaaactgc ctgatgcgct acgcttatca ggcctacgca gctcctgcaa tatattgaat
    15901 tttcatgctt ttgtaggccg gataaggcgt tcacgccgca tccggcatga acaaattgca
    15961 ctttgtcagc aatttggccc ccgtaaaata taaacattca ataaaacccg ctaaaaatta
    16021 tcgattcatc aataaatata tcctcacacc agaccttttt tcaccaatcg acaatcacca
    16081 ttacgttttt tattttttca ccgccaaatc gcttgcgcac agtgctgctt tgcggcattt
    16141 ttttaaacaa gcaaacacaa caagcaacaa ataccaggtt aacggagaag gttatgtgtt
    16201 caatttttgg cgtattcgat atcaaaacag acgcagttga gctgcgtaag aaagcactcg
    16261 agctgtcacg cctgatgcgt catcgtggcc cggactggtc cggtatttat gccagcgata
    16321 acgccattct cgctcacgaa cgtctgtcaa ttgttgacgt taacgcgggg gcgcaacctc
    16381 tctacaacca acaaaaaacc cacgtactgg cggtaaacgg tgaaatctac aaccaccagg
    16441 cattgcgcgc tgaatatggc gatcgttatc agttccagac agggtctgac tgtgaagtga
    16501 tcctcgcgct gtatcaggaa aaagggccgg aatttctcga cgacttgcag ggcatgtttg
    16561 cctttgccct gtacgacagc gaaaaagatg cctacctgat tggtcgcgac catctgggga
    16621 tcatcccact gtatatgggc tatgacgaac acggtcagct gtatgtgacc tcagaaatga
    16681 aatcgctggt gccagtttgc cgcacgatta aagagttccc ggcggggagc tatttgtgga
    16741 gccaggacgg cgaaatccgt tcttattatc atcgcgactg gttcgacttt gatgcagtga
    16801 aagataacgt gaccgacaaa aacgagctgc gtcaggctct ggaagattcc gttaaaagcc
    16861 atctgatgtc tgatgtgcct tacggtgtgc tgctttctgg tggtctggat tcctcaatta
    16921 tttccgctat caccaagaaa tacgcagccc gtcgcgtgga agatcaggaa cgctctgaag
    16981 cctggtggcc gcagttacac tcctttgctg taggtctgcc gggttcaccg gatcttaaag
    17041 cagcccagga agtggcaaac catctgggca cggtgcatca cgaaattcac ttcactgtac
    17101 aggaaggtct ggatgccatc cgcgacgtga tttaccacat cgaaacttat gatgtgacca
    17161 ctattcgcgc ttcaacaccg atgtatttaa tgtcgcgtaa gatcaaggcg atgggcatta
    17221 aaatggtgct gtccggtgaa ggttctgatg aagtgtttgg cggttatctt tacttccata
    17281 aagcgcccaa cgctaaagaa ctgcatgaag agacggtgcg taaactgctg gccctgcata
    17341 tgtatgactg cgcgcgcgcc aacaaagcga tgtcagcctg gggcgtggaa gcacgcgttc
    17401 cgttcctcga caaaaaattc cttgatgtgg cgatgcgcat taacccgcag gataaaatgt
    17461 gcggtaacgg caaaatggaa aaacacatcc tgcgtgaatg ttttgagtca tacctgcccg
    17521 caagcgtggc ctggcggcag aaagagcagt tctccgatgg cgtcggttac agttggatcg
    17581 acaccctgaa agaagtggcg gcgcagcagg tttctaatca gcaactggaa actgcccgct
    17641 tccgcttccc gtacaacacg ccaacctcaa aagaagcgta tctgtaccgg gagatctttg
    17701 aagaactgtt cccgcttccg agcgccgctg agtgcgtgcc tggcggtcct tccgtcgcgt
    17761 gttcttccgc taaagcgatc gaatgggatg aagcgttcaa gaaaatggac gatccatctg
    17821 gtcgtgcggt tggtgttcac cagtcggcat ataagtaaga aatgcgaaac agccccggtg
    17881 aaatccgggg ctgtttcagt tattgaggtg cttgttgatt ctgatatgca gtaaggaaat
    17941 gttccgggtt tgccacatca ctgtttgaca actcatcact gtaggccagt atttcataga
    18001 ttaatttccc accactattg ttgaattccg aatttcatcc tgtacgacaa aagaatggct
    18061 gtagggtggg gaaaaaacac aaagtaaaca ataattgacg aatatagcgc cacgctgttc
    18121 gcaacctaac caaacagtca ctttcgagca attttccttg aaaaagaggt tgacgctgca
    18181 aggctctata cgcataatgc gccccgcaac gccgataagg tatcgcgaaa aaaaagatgg
    18241 ctacgtagct cagttggtta gagcacatca ctcataatga tggggtcaca ggttcgaatc
    18301 ccgtcgtagc caccatcttt tttgcgggag tggcgaaatt ggtagacgca ccagatttag
    18361 gttctggcgc cgcaaggtgt gcgagttcaa gtctcgcctc ccgcaccatt caccagaaag
    18421 cgttgtacgg atggggtatc gccaagcggt aaggcaccgg tttttgatac cggcattccc
    18481 tggttcgaat ccaggtaccc cagccatctt cttcgagtaa gcggttcacc gcccggttat
    18541 tggggtatcg ccaagcggta aggcaccggt ttttgatacc ggcattccct ggttcgaatc
    18601 caggtacccc agccatcgaa gaaacaatct ggctacgtag ctcagttggt tagagcacat
    18661 cactcataat gatggggtca caggttcgaa tcccgtcgta gccaccaaat tctgaatgtg
    18721 tcgaatacgt tcggcaaatt caaaaaccaa tttgttgggg tatcgccaag cggtaaggca
    18781 ccggattctg attccggcat tccgaggttc gaaccctcgt accccagcca atttattcaa
    18841 gacgcttaca tcgtaagtgc acccagttgg ggtatcgcca agcggtaagg caccggattc
    18901 tgattccggc attccgaggt tcgaatcctc gtaccccagc cacattaaaa aagctcgctt
    18961 cggcgagctt tttgcttttc tgcgttcatt caatgtcgaa tgcgatgttg acacgtctta
    19021 tccttcaatg tcggatgcga cgctgccgcg tcttatccga cctacggttg gcacgcatcc
    19081 ggcaatgttg taaggctaca accctaacgc atatttcagc gcctgacgtt tcaacacgcc
    19141 agcacgctct gccgccatta acccgagatt acgcacaaaa cgcagcggcg gcagattatt
    19201 actgaatccg gcataaaaca gatccatacc actttgcata atgaagttat ccgccatgcg
    19261 ccgcatctgg taacgcttga ggacaggata actggcccac gcttcaccgt aactgcgggc
    19321 attcaccaga acatcaatca gggcatcgac atcacgataa ccaagattca ccccctgccc
    19381 cgccagcgga tggatggtat gcgcggcatc gcccaccagc gcaagccccg gctgcacata
    19441 ctgcaacgca tgtcggcgcg tcagcggaaa cgcaccagcg gcaagcggtg taacgtaacc
    19501 cagacgcgac gggaaatgct tcgcgatttc cgcctggagt tgcgccatat tcatattctg
    19561 caactggcga atacgcgccg gagagtcata ccacaccagc gatgcccagt tatcaaacaa
    19621 cggcagaaac gcacgcggtc cgtccggggt aaattgctgc caggtgctgt cgccgggatc
    19681 gttctcacac tgtacgctaa tcaacatgca cgactgcgca tactgccagg catgaacgcc
    19741 aattcccgcc atctgccgca cctgagaatt tgcgccgtcg gcaccaatca ccagtttcgc
    19801 gcggatcgtt tcaccgccct tcagttccag ctcctgaaga tcattatctc gatgtaatgc
    19861 aatcagcgag cctggcacac gtaacgttac tttcggatgc gcttccagcg cctgccacag
    19921 cgcctgttgc aggacggtgt tttccaccat atagccaagc aacggtagct taagttcagc
    19981 ggcgtcaaac accacatgcg ccgtttccca ctcccacgtt tccagtctgc ggtaaggatg
    20041 gcaacgcata gcctgtactg catcccagac ccctaaccct ttaagcaatg ataccgatgc
    20101 ggcgctgatc gccgagatcc gcacgtccgg ttggctatca gcgacaaacg gtgcaggttc
    20161 tgcgtgctcg atcaccgtta ccgaaaatcc gtgctgtgcc agccccagcg ccagcgcgcc
    20221 gccgaccatt cctccgccga caatggcaat ttccgttggt tgatttgtca tggtcaatca
    20281 tcctgttagc aatatgcttt aagtttacag gatttttacc cccaagggct gataacgctc
    20341 atactggcca caacggcagc aaagcattac actatgcgcc ctgcattcct ggctactatt
    20401 tcgcaagagc aagtcgatga ccaaaaaact ccatattaaa acctggggct gtcagatgaa
    20461 cgagtacgat tcatcgaaga tggccgatct gctggatgcc acccacggct atcaactgac
    20521 cgacgtggcg gaagaagcgg atgtgctgct gctgaacacc tgctcaatcc gcgagaaggc
    20581 tcaggaaaaa gtcttccatc agttgggtcg ctggaaactg ttaaaagaga agaatccaga
    20641 cctgattatc ggcgtcggtg gctgcgtggc atcgcaagaa ggcgagcaca ttcgccagcg
    20701 cgcccactat gtcgatatta tttttgggcc gcaaacgctg caccgtctgc cggagatgat
    20761 caactccgtg cgcggcgacc gcagcccggt tgtagatatc agcttcccgg aaatcgagaa
    20821 gtttgaccgt ctaccggaac cgcgcgccga agggccgacc gcgtttgtct ccatcatgga
    20881 aggctgcaat aaatattgca cctactgcgt ggtgccttac acccgtggtg aagaggtaag
    20941 ccgtccgtct gacgatattc tgtttgagat tgcccagctt gcggctcagg gcgtgcgtga
    21001 agtcaacctg ctcggtcaga acgtgaacgc ctggcgtggt gaaaactacg acggctccac
    21061 cggatcgttt gccgatctgc tgcgtctggt tgctgcgatc gacgggatcg atcgtattcg
    21121 ctttaccacc agccatccga tcgaattcac cgacgatatc atcgaagtgt atcgcgacac
    21181 gccggagctg gtgagcttcc tgcatctgcc ggtacagagc ggttccgatc gcattctgaa
    21241 cctgatgggc cgtactcata cggcactgga gtacaaagcg atcatccgta aactgcgtgc
    21301 ggcgcgtcca gatattcaga tcagttctga tttcatcgtt ggcttccctg gcgaaaccac
    21361 cgaagacttc gagaaaacga tgaagctgat tgccgacgtc aatttcgaca tgagctacag
    21421 ctttatcttc tctgcacgtc cgggtacacc agccgccgat atggttgatg atgttccgga
    21481 agaagagaag aagcagcgtc tgtatattct gcaagaacgt atcaatcagc aagcgatggc
    21541 atggagccgc cggatgctcg gcaccaccca gcgtattctg gtagaaggga cttcgcgtaa
    21601 gagcatcatg gagctttccg ggcgtaccga aaataaccgc gtggtcaact tcgagggcac
    21661 accggatatg atcggtaaat tcgtcgatgt agaaattacc gacgtctacc cgaactctct
    21721 gcgcggtaaa gtggtgcgta ctgaagatga aatgggcctg cgcgtggcag aaacaccgga
    21781 atcggtgatt gcccgtaccc gcaaagaaaa cgaccttggc gtgggttatt atcagccgta
    21841 attctcaggc ccgccgttcc ggtgggcctt gttttttctc tctttatccc catctttatc
    21901 gcaatgcttg cgcctttttc ctgtggcgtg aataatttcc ttataggccg gtgaatgttc
    21961 agcttccggc ggcatacaga taagaggaac ggtttgaaca tagacactcg cgaaatcacc
    22021 ctggagccag cagacaacgc gcgtctgttg agcctgtgcg gcccgtttga tgacaacatc
    22081 aagcagctcg aacgccgtct cggcatcgag atcaatcgcc gcgacaacca ctttaaactg
    22141 accggccgtc cgatttgcgt caccgctgcg gcagacattc tgcgtagcct gtatgtcgat
    22201 acagccccga tgcgcggtca gattcaggat atcgaaccgg aacagatcca ccttacgatt
    22261 aaagaagcgc gagtactgga gcaaagtgcg gagagcgtgc cggagtacgg caaagcggtc
    22321 aatatcaaaa ccaaacgcgg cgtaattaag ccgcgcacgc caaaccaggc gcagtacatc
    22381 gccaatattc tcgaccatga cattaccttc ggcgttggcc cggcgggtac gggtaaaacc
    22441 tacctggcag tggctgcggc agttgatgcc ctggagcgtc aggagattcg ccgtattctg
    22501 ctgactcgtc cggcggtcga agccggtgag aaactgggct tcctgcctgg cgatttaagc
    22561 cagaaagtag acccgtatct gcgcccactg tacgacgcgc tgtttgaaat gctgggcttt
    22621 gagaaagttg agaaactgat tgagcgcaac gttattgaag tcgcgccgct ggcctatatg
    22681 cgtggtcgta cgctgaacga cgcgtttatc attctcgatg agagccagaa caccaccatc
    22741 gaacagatga agatgttcct gacccgtatc ggttttaact caaaagcggt tatcaccggc
    22801 gacgtcacac agatcgacct gccgcgtaat actaaatcag gcttacgtca cgccatcgaa
    22861 gtactggccg atgtcgaaga gatcagcttt aacttcttcc acagcgaaga cgtggttcgt
    22921 caccctgtgg tggcgcgtat cgttaacgcc tatgaagcct gggaagaagc cgaacaaaaa
    22981 cgaaaagcgg cgctggcggc agaacgcaag cgcgaagaac aggaacaaaa atgagtcagg
    23041 tgatcctcga tttacaactg gcatgtgaag ataattccgg gttaccggaa gagagccagt
    23101 ttcaaacatg gctgaatgcc gtgatcccgc agtttcagga agaatcggaa gtgactattc
    23161 gcgtggtcga taccgccgaa agccacagtc tgaatctgac ctatcgcggt aaggataagc
    23221 cgaccaacgt gctctccttc ccgtttgaag tgccgcctgg catggaaatg tcgctactgg
    23281 gcgatctggt tatctgccgt caggtggttg agaaggaagc tcaggagcaa ggcaaaccac
    23341 tggaggcgca ctgggcgcat atggtggtgc acggcagtct gcatttgtta ggttacgatc
    23401 acatcgaaga tgacgaagca gaagaaatgg aagccctcga aacaaagatt atgcttgctc
    23461 tgggctatga ggatccgtac attgccgaga aagaataatt tgccaggcat ttgactggca
    23521 gacgtccccg ccgttggtga ttaacgacgg cgttttgatt aactaacatg agaacccata
    23581 cgacgccatg agcgacgaca attcacacag tagtgacacg ataagcaaca agaagggatt
    23641 tttctccctg ttactcagcc aacttttcca cggtgaaccg aaaaaccgtg acgaactgct
    23701 ggcgctgatc cgtgattccg ggcagaacga ccttatcgac gaagatacgc gcgatatgct
    23761 cgaaggggtg atggacatcg cagaccaacg cgttcgcgac atcatgatcc cccgctccca
    23821 gatgattacc ctgaaacgca accagacgct ggacgaatgc cttgatgtca tcatcgagtc
    23881 cgcccactca cgtttcccgg tgattagcga agacaaagat cacattgaag ggattctgat
    23941 ggcgaaagac ttgctgccgt ttatgcgcag cgatgctgaa gccttcagca tggacaaagt
    24001 gttacgtcag gcggttgtcg ttcctgaaag taagcgcgta gaccggatgc tgaaagagtt
    24061 tcgctctcag cgttaccaca tggcgatcgt cattgacgaa ttcggtgggg tttccggtct
    24121 ggtgaccatt gaagacatcc tggaactgat tgttggtgag attgaagacg aatatgacga
    24181 agaagatgat atcgacttcc gtcagctgag tcgtcatacc tggaccgtgc gcgcactggc
    24241 ttccattgaa gacttcaacg aagcgttcgg cacccacttt agcgatgaag aagtcgacac
    24301 tatcggtggt ctggtgatgc aggcgtttgg gcatcttccg gcgcgtggcg aaactatcga
    24361 catcgacggt taccagttca aagtggcgat ggccgacagt cgacgtatta ttcaggttca
    24421 tgtcaaaatc ccggatgact caccccagcc gaagctggat gaataaaacc gaaactggat
    24481 agataactac atggcttttg cctcattaat tgaacgccag cgcattcgcc tgctgctggc
    24541 gttattattc ggtgcctgcg gaacgctggc cttctctcct tacgacgtct ggcctgcggc
    24601 gattatttcg ttgatggggc ttcaggcgtt gacctttaac cgccgtccac tccagtctgc
    24661 cgctattggc ttttgctggg gatttggcct ctttggcagc ggtattaact gggtctatgt
    24721 cagcatcgcg acctttggcg gaatgcctgg cccggttaac atcttcctgg tggtggtgct
    24781 ggcggcgtat ttgtcgctgt ataccggact gtttgctggc gtgctgtcgc gtctgtggcc
    24841 gaaaaccacc tggctgcgcg tggcgattgc cgcccctgct ctctggcaag tgaccgagtt
    24901 tctgcgcggt tgggtactga caggcttccc gtggttacag ttcggctata gccagattga
    24961 tggcccgtta aaagggctgg caccgataat gggcgtggaa gccattaact tcctgctgat
    25021 gatggttagt ggcctgctgg cactggcgtt ggtcaaacgc aactggcgtc cgctggtggt
    25081 ggccgtcgtg ctgtttgccc tacccttccc gctgcgttac atccaatggt ttaccccgca
    25141 accggagaaa accattcagg tttcgatggt tcagggcgat attccgcaat cactgaaatg
    25201 ggatggagat cagcttctta atacgctgaa gatttactac aacgcaacgg ctccgctgat
    25261 gggcaaatca tcgttgatta tctggccgga gtcggcgata accgatctgg aaattaatca
    25321 gcaaccgttc ctcaaagcac tggacggtga gttgcgcgat aaaggtagct cgctggtaac
    25381 cgggattgtc gacgcgcgtc tcaataagca gaaccgctac gatacctaca acaccatcat
    25441 cacactgggt aaaggtgcac cgtacagcta cgaatcagcc gatcgctata acaaaaacca
    25501 tctggtgccg tttggcgagt ttgtcccgct ggagtcgatt ctgcgtccgt tagcaccgtt
    25561 ctttgatctg ccgatgtcgt cgttcagccg tgggccatat atccagccgc cgctgtcagt
    25621 aaatggtatt gagcttactg cggctatttg ctacgagatc attctcggcg agcaagtgcg
    25681 cgataacttc cgcccggata ccgactatct gctgactatc tccaacgatg cgtggtttgg
    25741 taaatctatt ggtccatggc aacacttcca gatggcgcga atgcgtgcgc tggagctggc
    25801 gcgcccactg ttgcgcagca ccaacaacgg cattacggcg gtgattggcc cgcagggtga
    25861 gattcaggcg atgatcccgc agttcacccg cgaggtgtta accactaatg tgacaccgac
    25921 caccggactc acaccgtatg cacgtaccgg caactggcca ctgtgggtgc tgacggcact
    25981 gtttggtttt gccgctgtgt tgatgagtct acgagcacgt aaacgttgat gtgcctgatg
    26041 tatcctgcat gagcaaaacg tactttctca ttgagctttg gggcatggtt atcatgcccc
    26101 tttttcttac ggttcaggga tacaagccac attgccatat tggggatgac gaataattgc
    26161 ctgcggatca agcgagcgcg tcctgtccat ttggatcaac ccgttcttcg ccatgacaaa
    26221 tatttttcta ccatccgctg aaaaacgaag gtgattaacg tagctggcag gataaacgcc
    26281 aataatctgc ccggcattaa tattgagcag gatgacataa ccttgcaggc catatgacac
    26341 caacgctaaa tattgaccgt ccgggctaat accctcaacg gaataaacgc tcctgctaca
    26401 ccattgcgtc ataatgctgg cttgttgagc ccctacgctt atacgtgaaa tcccctgact
    26461 atctgcaaaa ataacctcgc cgttttcagg tcgaaaacgc atcgccgata tcgttccacg
    26521 cgcatcacct gcgggaaagt cttctttctg atgcgtgatg gtattgatcc gcacgatgtt
    26581 acctctgcct gctcccggaa ccagtaatgt tctttcatcc ggggaaagtg ccataaccca
    26641 ggcgcctggt ttaccgctcg tccccgcccc gtcgtatttc tccagcggga tatccgccac
    26701 atgctgataa gtcaccagat caatcgctga cacactatta ctggtgcgat tcatcaccca
    26761 ggcttttgtg ccatcacgcg agaggataag gctgtcagga tgtgcaccgg tggtaatcga
    26821 ctgaataatc tcccctgtcg ccacgttaat gaccgataac gcattcgctt caaatgaagt
    26881 cgcataaatc aacttttcat ccgggcttaa tgccagcgat ctgacgccct gatctttaca
    26941 gccaccacaa tgtttgactg acttttcttt cgctatgggc gctgtaaagg tatgcaggat
    27001 tttcttttgt ccgaggtcga aaacaacaat gctgttcgtg ttttcaattg cggcatacaa
    27061 catattacca tcccgactga tcgccatatc atggatatcg gcaatctcag cgagcaaatc
    27121 accactggcc tgttcacgac ttaccggagc ggataatgtt tccttgaggg cgttgcgttc
    27181 ctccgctaac tgctgctttt tttgccgtcg ctcttgttca atctcctgtg gataaaacgc
    27241 ttcacgcaga ctttgcctga cttgtaaaac tgactcatcc atctgctgct gcgcaagcca
    27301 gatagccccg gtcagaagaa gactgcccgc aacaataatc ccgccttccg taacgagtcg
    27361 gttttgccca gataaacgcg cgctcagcca acccaacgcg ccacccgcaa tcaggccgcc
    27421 aatgtgacaa gcattatcta ttcctgtttg ccgggcacca tacaacagtg tcagcgccac
    27481 catacccaac agagaaaata ctcgccgctg gtttttatgg tatgtgcccg cacctgaagc
    27541 aagctgtgtt gctatcgcag cgccagctat tcccataatt gccccgaatg ccccaacgct
    27601 gatgactatc tgatcactat cgcgtaacgc ataacaggcg ctgataagcc caccaaagac
    27661 gccggagaat aaccaggtaa tcaggagtcg ccatttcccc agaatctgtt ccgccacgcc
    27721 tcccacgacc aggaatgcaa acatattcat cagcagatga gaaacactac tgtgcagaaa
    27781 gatactgctc aataagcgcc agggttcacc cgacaaagta agaggcgcaa cgtttgcgcc
    27841 gagatggata agtgcggatt gatcgacctc ttcataactc atccattgtg cgagataaca
    27901 aaatatccca atacagagtg caaaaaggat aagggttatt gcgggtaatt gaacatttaa
    27961 cggcttaacc gaagatgcag acataaggtg tttcttcctt gaaaagacag gtaaaaagca
    28021 tttttcccgt gtgcagttat catcccggca aacgtcccat gccgaaaaga taattctgtc
    28081 cgaaatatga ctttttcagc ctaaaattac aatcgtaatt aatttgcccc taagtatttt
    28141 ttggcatgta agttgcttta tttactgtgt aagcgatgaa atcagccgcg acgcaaccag
    28201 gttgcaccac cacaaatcag cggtagcacc aaaaaggtgc ggtttaagaa ttttgcttcg
    28261 gaatggtgcg gcgcatctcg caaaaacaaa caataaaaca gcaatatctt tacatttagc
    28321 caaactaaat gttacctaac aggcacaaca ctgcacaata aagttgcaga cgataacaac
    28381 acaaacactc acaacgggta tccatgcgtt cttaacgcag aagataaagg agttggatat
    28441 gcaattacgt aaacctgcca cagcaatcct cgccctggcg ctttccgcag gactggcaca
    28501 ggcagatgac gccgccccgg cagcaggcag tacgcagtac gcagtacgct ggacaaaatc
    28561 gccaaaaacg gtgtgattgt cgtcggtcac cgtgaatctt cagtaccttt ctcttattac
    28621 gacaatcagc aaaaagtggt gggttactcg caggattact ccaacgccat tgttgaagca
    28681 gtgaaaaaga aactcaacaa accggacttg caggtaaaac tgattccgat tacctcacaa
    28741 aaccgtattc cactgctgca aaacggcact ttcgattttg aatatggttc taccaccaac
    28801 aacgtcgaac gccaaaaaca ggcggctttc tctgatacta ttttcgtggt cggtacgcgc
    28861 ctgctgacca aaaagggcgg cgatatcaaa gattttgccg acctgaaaga caaagccgta
    28921 gtcgtcactt ccggcactac ctctgaagtt ttgctcaaca aactgaatga agagcaaaaa
    28981 atgaatatgc gcatcatcag cgccaaagat cacggtgact ctttccgcac cctagaaagc
    29041 ggtcgtgccg ttgcctttat gatggatgat gccctgctgg ccggtgaacg tgcgaaagcg
    29101 aagaaaccag acaactggga tatcgtcggc aagccgcagt ctcaggaagc ctacggttgc
    29161 atgttgcgta aagataatcc gcagttcaaa aagctgatgg atgacactat cgctcaggtg
    29221 cagacttccg gtgaagcgga aaaatggttt gataaatggt tcaaaaatcc aattccgccg
    29281 aaaaacctga acatgaattt cgaactgtca gacgaaatga aagcactgtt caaagaaccg
    29341 aatgacaaag cactgaacta attacaagaa ccaggggcgg aaattccagc cctctcgatt
    29401 gttacgtagc acggacagac tatacgcctg atggtcgttc cccatcgggc ctgaaaaccg
    29461 caatacgctg ggtaacaatc ttcgagggta gcagttaacg ctgctaccct cttttttctg
    29521 gagtagattt atgtctatag actggaactg gggtattttt ttacaacaag ccccgttcgg
    29581 caacaccacc tatcttggtt ggatctggag tggttttcag gtgacgatcg ctttgtcgat
    29641 ctgcgcctgg attatcgctt tcctcgtcgg ttcatttttc ggcattttac gtaccgttcc
    29701 aaaccgtttt ctctccggtc tgggtacgtt gtatgtcgaa ctgttccgca acgtgccgtt
    29761 gattgtgcaa ttctttacct ggtatctggt gatcccggag ctgttgccgg agaaaatcgg
    29821 catgtggttt aaggccgagc tggatcccaa tattcagttt ttcctttcat ccatgctctg
    29881 cctggggctg tttaccgccg cccgtgtttg cgaacaggta cgcgccgcca ttcagtcgtt
    29941 gccgcgtggg caaaaaaatg ccgcgctggc gatgggcctg acgctaccgc aggcttatcg
    30001 atacgtactg ctgcctaatg cttatcgcgt tatcgtcccg ccgatgactt ccgagatgat
    30061 gaacctggtg aaaaactccg ccatcgcctc gactattggt ctggtggata tggcggcgca
    30121 ggcgggtaaa ttgcttgatt actcagccca cgcctgggag tcgtttaccg ctattacgct
    30181 ggcgtatgtg ttgattaacg cgattatcat gctggtaatg acgctggttg aacgtaaagt
    30241 tcgcctgcct ggcaacatgg ggggcaaata atgtacgagt ttgactggag ttccattgtc
    30301 ccttccctgc catatctgct cgacgggctg gtgatcacgc tgaaaatcac cgtcacggca
    30361 gtcgtgattg gtattttgtg gggcaccatg ctggcggtga tgcgcttgtc cagctttgcg
    30421 cccgtagcgt ggtttgccaa agcctacgtt aacgtattcc gctcgattcc tttagttatg
    30481 gttttgctgt ggttttacct gatcgtgcca ggttttctgc aaaacgtgct gggattatca
    30541 ccaaaaaatg atatccgttt aatttcggcg atggtggcgt tttcgatgtt tgaagcggcc
    30601 tactattcag agattatccg tgctggtatt caaagtattt ctcgtggtca gtcgagcgcc
    30661 gcgctggcgt tgggaatgac tcactggcag tcgatgaaac tgattattct gccgcaggcg
    30721 ttccgcgcga tggtgccgct tctgctcact cagggcatcg tactgttcca ggatacctca
    30781 ctggtgtatg tgttatctct ggccgatttc ttccgtaccg cctcaaccat tggtgagcgt
    30841 gatggtacgc aggttgagat gatcctgttt gccggatttg tttatttcgt tattagtctt
    30901 agcgcgtcgt tgttggtcag ctacttgaaa agaaggacag cataatgatt accctgaaaa
    30961 atgtttcaaa atggtatggt cactttcagg tgctgaccga ctgctcaacc gaagtgaaaa
    31021 aaggcgaagt ggtggtggtt tgcggcccgt ctggttccgg caaatcaacg ctgattaaaa
    31081 ccgtcaacgg cctcgaacca gtgcagcaag gtgaaatcac cgtcgatggt atcgtggtta
    31141 atgacaagaa aaccgatctg gcaaagctgc gttcccgcgt cgggatggtg ttccagcatt
    31201 ttgagttgtt cccccatttg tcgattattg aaaacctgac tctggcgcag gtgaaagtgc
    31261 ttaaacgcga taaagcgccc gctcgtgaaa aagcattgaa attgctggag cgcgtgggac
    31321 tttccgcaca tgccaataaa tttccggcgc agatttccgg cggtcagcag cagcgtgtgg
    31381 caatcgctcg cgcgttgtgt atggatccta ttgcgatgct gttcgacgaa ccgacatcgg
    31441 cgctggatcc ggagatgatc aacgaagtgc tggacgtgat ggtggaactg gcgaacgaag
    31501 gaatgaccat gatggtgggg acccacaaaa tgggctttgc ccgcaaagtg gcgaatcggg
    31561 tgatctttat ggacgagggt aaaattgtcg aagactcgcc gaaagacgct ttcttcgatg
    31621 atccgaaatc ggaccgcgcg aaagacttcc tcgcgaaaat cctgcattaa tcactctggc
    31681 gcgcataccc aagtgcgcgc catctcacgc tttatcgttt cgcccctcgt atctgttaca
    31741 tcctggcgtt acccttgtcg caaagaagca cacaacaagg agcaacaatg gcactgccaa
    31801 ttctgttaga ttgcgaccca ggtcatgacg acgctatcgc aatagttctc gccctcgcct
    31861 caccagagct tgatgtcaaa gcaattacgt cttccgccgg aaaccagaca ccagaaaaaa
    31921 ccttacgcaa tgttctgcgt atgctgacct tgcttaatcg caccgatatt ccggtagcag
    31981 gcggcgcggt aaaaccgtta atgcgtgagt tgattatcgc ggacaatgtg cacggcgaaa
    32041 gcggtctgga tggcccggca ttaccggaac cgacgttcgc accgcaaaac tgtacggcgg
    32101 tagagctgat ggcgaaaacg ctgcgcgaaa gtgcggaacc tgtcacgatt gtgtctaccg
    32161 gaccgcaaac taacgttgcc ttgctgctca atagccatcc ggaactgcat agcaaaattg
    32221 cccgtatcgt gattatgggc ggcgcaatgg ggcttggtaa ctggacgcct gcggctgaat
    32281 ttaatattta cgttgacccg gaagcggcag aaattgtctt ccagtcaggg atcccagtgg
    32341 tgatggccgg tctggatgtt actcataaag cgcaaatcca cattgaagac accgagcgtt
    32401 tccgcgcgat tggcaaccct gtttcaacca ttgttgccga actgctggat ttcttcctcg
    32461 aatatcataa agacgaaaaa tggggctttg tcggtgcacc gctgcatgac ccatgcacca
    32521 tcgcctggct gttgaaaccc gagttgttta ccactgttga gcgctgggtt ggcgtggaaa
    32581 cacaggggaa atatacccag ggtatgacgg ttgttgatta ttattatctg actggcaata
    32641 aaccgaatgc cactgtaatg gtcgatgttg atcgtcaggg ctttgttgat ttactggctg
    32701 atcgtctgaa attttacgct taacacacgt cattgattaa gatcaccacg cgttacctgg
    32761 gtggtcttaa tctgtttatc tctttttctt tcaagatata aatgcaatgg ataatgcaga
    32821 actcaccatt ggtatcgatc tcggcactac caatagttta attgccgtct ggaaagacgg
    32881 tgccgcgcaa ttaattccaa ataagttcgg tgaatattta acaccatcca taattagcat
    32941 ggatgaaaat aatcatattt tagtcggaaa accggctgta tcacggcgta cttcgcatcc
    33001 ggataaaaca gcagcgttat ttaaacgcgc aatgggcagt aataccaact ggcggttagg
    33061 cagcgacaca tttaacgcgc cagaactgtc ctctttggta ttacgctcat taaaagaaga
    33121 tgccgaagaa tttctgcaac gtccgattaa agatgtggtg atctccgttc cggcttattt
    33181 cagcgatgaa caacgcaagc atacccgttt agctgcggag ttagccgggt taaatgcggt
    33241 acgcttaatt aatgaaccca cagcagctgc gatggcatat ggcctgcata cgcaacaaaa
    33301 tacccgctcg ctggtttttg atctcggtgg cggcacgttt gacgttacgg tgcttgagta
    33361 cgccacgccg gtgattgaag ttcacgcctc cgctggcgat agcttcctcg gtggcgaaga
    33421 ttttacccat atgctggtcg atgaggtttt aaaacgcgcg gaagttgcca ggaccacgct
    33481 taacgagagt gaactggcag ccttgtacgc ctgtgtggaa gcggcaaaat gtagcaatca
    33541 atcgccattg cacattcgct ggcagtatca ggaagaaacg cgggaatgcg aattttacga
    33601 gaacgaactg gaagatttgt ggttgccgct gctcaatcgc ttgcgagtgc cgattgaaca
    33661 ggcgttgcgc gatgcgcgtc tgaagccgag tcaaatcgac agtctggtac tggttggcgg
    33721 cgcgtcacaa atgccgctgg tgcagcgaat cgccgtgcgt ctgtttggca aattaccgta
    33781 tcaaagttac gatccgagca ccattgtcgc gctgggcgca gcaatccagg ccgcctgccg
    33841 cttacgcagt gaagatattg aagaggtaat cctcactgat atttgccctt actcgttggg
    33901 cgttgaagtt aaccgccagg gcgtttccgg cattttctcg ccgattattg aacgaaacac
    33961 cacagtaccg gtgtcgcgtg tagaaactta ctcgaccatg cacccggagc aggattcaat
    34021 tacggttaac gtctatcagg gagaaaacca caaagttaaa aataacattc tggttgaatc
    34081 cttcgatgtg ccgttgaaga aaaccggggc ttatcagtcg attgatattc gctttagtta
    34141 tgatatcaac gggttgcttg aagttgacgt gcttctggaa gacggcagcg ttaagtccag
    34201 agtgattaac cacagcccgg taacattgag cgcgcagcag attgaagaga gtcggacgcg
    34261 gttatccgca ttgaaaattt atccgcgcga tatgctcatc aatcgcacct ttaaagccaa
    34321 actggaagag ttgtgggcgc gagcgctggg tgacgagcga gaagagattg gccgggtgat
    34381 caccgatttt gatgcggcgc tacagtcaaa cgacatggcc cgcgtggatg aagttcggcg
    34441 gcgggcgagc gattatttag ccattgagat cccataaaca cggctgccgg atgcggcgta
    34501 aacgctgcat ccggcatcgg cgcaaaaaac acatcgtcaa ctaaacaaca tcgcgatttt
    34561 gccgagagca taacctatca ccagcaccgt taaactgatt ttgataatgc tggtaatgct
    34621 ctgtggtttt tcatcctcat catttttttc ttcatggttt tcaggtgttg gctcatcgac
    34681 atcttcatcc tccggctcga gtttcacttt cgtcaacagc atccgggtga taatggcctc
    34741 taatggatga gcatctccgc cttccagcct tgtattaaga cgggccagca tctcttgttt
    34801 cggaaacgct tcaagcacta cctgttccgc tacccgatac aaatccagta acggtgaatc
    34861 ttgctctgtc tcgctaccga ctctcgattt ccaccacgcc catgctttgc gtttgaagaa
    34921 taacgactca ataaacgatt gacctaacgg cgataatttt ccgctatgta aaatctccgc
    34981 ccataacagc cgcgtccggg cgctctcacc aggaacatat ttcaatggtt tactttgcgc
    35041 atctaccatg ctctgcgctt cgataaccat cactaataac gcgaaataat ctgggcaatg
    35101 acgcttactc cactgcaaca acaaattatc agcttgtgta gatgggtaac tttcccggta
    35161 cgcgcagaga tcggcaagca ggctttcccc ctcgccgcag tacaaccttt gagcacacaa
    35221 gtaatatcgg gcatcttcgc tttctggttc ttccatttgc cactgtttgg ctacaggaat
    35281 gagttccgcc atacctgttt gcaccgagct gtaccagcgc aacagtttgc gatgtaactt
    35341 tgcatcatca ggaatgaacc acggaccttc catcgccaaa aacgcagtga catagtcagg
    35401 atggtaacgg cagcaacgtt ccagcgcgaa gtaatactca acagtctggt tctgcaacgc
    35461 aacgggatat tccagaaggc taaggaaatc gaaacaatca ccagcctgaa tggcctcaag
    35521 aaaagcctcc ctttcttcct catccattcc ttcgctgtca ttaaacgaat gccagttcaa
    35581 acgctctgcc agcaaagaag cacaattcaa tgaaagatat cgcgcttcta tagcgattgc
    35641 acacagcggc cagcgtaatt gatcgacatc ctccatgttc caggtattta attgctgaat
    35701 aaatttctgc caggcggagg gctgaaaacg atcactttct gaatccagta atgtcctgaa
    35761 tgcacgcagt atttcatgtt cagcggcggc atctttttct tcatcatctg cttcctcgac
    35821 aggatttacc gccagtcgca gcgcctcttc ataggcctgg cgtaatgctt taaacccctg
    35881 cggatcggtt tcgggatgac ataacggtaa gcgagcaaga taagcctggc ggataatgtc
    35941 tatttgcgtc gtgctttcaa tttcgaggat ttgccaacat gttttcatag gtcgctcaca
    36001 tccttaagcg ttaccgggca ttcaggctgg acagttaatg gttgccaggg aagcgtggca
    36061 tagaaacgat cgcttcccgc tgccagctct tcgaacatcc gactcccggc gctatcgtat
    36121 ttgtacaggg ttagcgcctc gcgtagcgaa gtgttgtctt cgcactgaga agattgccag
    36181 tagagacgcc ctaacgaata ggcagaaaaa tagtgcatcc agccgtgata gtaatggtga
    36241 gctcgtacat agacgcgcga ttgcagccat aaactctctt cttccgtcag ccacttgttg
    36301 agcacaccga cccgtgacag aaaccccatt cgaacataat cccaagcttt gattcaccct
    36361 tccccacagc acatagcggt ttgggcaacg aattgggtat aaatcaaccc tctctccgag
    36421 ccaccagcaa ttaatgcttt ccactcttca ggggaagagc gatgccatgt cagatataag
    36481 ccagctaaat cattggcatg accatcatca gtcatctgat aaatagtctg aattaaatca
    36541 tcacgattat ttattcccca ggatgatgag agatcgaatt cttttatacc ggtatacatt
    36601 tttggcgagt catgcgcggg tttgcaaccc tgattaagta tttccatggg cgcagaaagc
    36661 gcaaaaagaa gatattgttc ttccttattc atttgttaat aatcccttaa gtgcattaac
    36721 tgactacttt tttatattac ttgccgggct ttccgcacat taacgtcgac tgtcacccga
    36781 acagatggag tattttccct atcaaaccgg caaagataaa aatgtagaaa ataattttga
    36841 tgacgcccag acagcccggc ccaccatcgt caacgggcat tggctgcggt tgcggctccg
    36901 gttcaacagt ttgcttctcg gtaaaattcg ccgcctgaat taataatcga cgaataatta
    36961 atgcttccag tggacaacga tcttctgcat caagacggct tacgatcggc attaatgatt
    37021 cttctgtcgg ttggctggcc tgcactaatt gtttggcaac taaatataat ggccataaga
    37081 gatgttctgt atcacgcgtg agtgagatcc gcggcttacg tcctttgtgc aaaaccatct
    37141 cgaccagtga acgccccagc gcagagagtt tttcatcgct gagtatttcg tataaatgaa
    37201 aacgcgtacg ggcgctgtcg ccggggacat aaagtagctg tttaccctga tcgttaacca
    37261 gttcacgagc ttcaatcatc atcaccacta acgggtaata atcgacccga tgctgacggc
    37321 accattgcaa tattaaagca tccgcctggg tggagggata ctcgcgccag tagtcacaaa
    37381 gttctgccag caagctttcg ccttctccac aatagacgcg ttgcgcgtat tcataataac
    37441 gcgcatcttc attatcaggt tcagcttccc gccacgaccg ggcgtaatcc agaagttcgg
    37501 ggatatccag gcgacctgcg ctataccagc ggagtaaatt tctgtgcagt tttgcatcat
    37561 cggggatgat cactgcgcga tgttgcgcta aatacaatgt cagccattct ggatgcgatg
    37621 accaaatccg agcgaacatt tggtaaaaat cgatggtgtc attttgcacg gcaacgggca
    37681 gatgcagaat ggtctggaag ttaaaaacat tccccttcgc aatggcatat aaaaaggatt
    37741 ccagttcttc ttcgtctatt tccccgacgt tttcctcctg caaccaccgc aatctttctg
    37801 ctaataacac cacgcactcg aaggataaat gagcagtgtt catggcgatt gtgcacagcg
    37861 accagcgtaa ttcatcaatc tcttccatcg agcaataatt taattgctga atgaatcgct
    37921 gctaggcgga gggcagaaaa cgttcgctat cagaggcaag taacgcgcga aaggcgagca
    37981 gaatttcatg ttctgctacc tcatattctt ctggttgcca aacagattta gcaggcgact
    38041 gcgcaatccg tagcgcctcc tcatacgcct gacgaagttg tttaaaaccc tgcggatcgg
    38101 tttctggatg aaaggacggt aacagcgcca gataagcgcg gcggataata tcgacgtcag
    38161 tcgtttcctc tatatcgagg atcttccagc aatttttcat aagtcgctca tatccttaag
    38221 cgtttccggg catgtggggt agtcagccag tggttgccag gacaaggtag ggtaatacgc
    38281 atcatcactg gcaaataatt gataaaacat atcattgc
//
LOCUS       DADMHM010000012        38161 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.012, whole genome shotgun sequence.
ACCESSION   DADMHM010000012 DADMHM010000000
VERSION     DADMHM010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 38161)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 38161)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..38161
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.012"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..203)
                     /locus_tag="JN125_000565"
     CDS             complement(<1..203)
                     /locus_tag="JN125_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000350897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870440.1"
                     /translation="MDIFNTSISRKGTYCTQWDFCEDRFGVKDVLPFSISDMDLPIPE
                     AIIRTLKKRLEHPILGYSRWQHD"
     gene            complement(203..1732)
                     /locus_tag="JN125_000566"
     CDS             complement(203..1732)
                     /locus_tag="JN125_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000283226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HAY8870441.1"
                     /translation="MYPIALLSVCGMMLGLGSGLASDDMAKFIPVLAIPLIKTILDFI
                     VSLGLFAFVNLPVLFAIAIPLGLLKEKDDKAYGAFSGLIGFMAMHLGTNFYLKQHDLL
                     VAADQMSTHGQTIILGIQSYNTSVLGGIVAGLLVASMYKKIVNLRIPESLGFYSGPRL
                     VPIITLIVMSGFGLIIPFIWPPFFNLFMLIGHWISTSGPVGYFFYAVAERVTIPFGLN
                     HLVTSVFRFTPIGGSAVIGGEEYYGTLNMFMAYVKENAVIPLDLAGKMEQGKLMIQYG
                     LAGAALAMYRTAHAQNRRAIKALLISGVLTVIIGGVSEPIEFLFLFVSPLLFVFHAFM
                     NGLANMVLPYMGVKMGFTGDLIQFISFGVLRGTRTGWPLAVCVEVAYFFIYYFVFRWT
                     ILKFNLMTVGREESSPVTLNAHEETAIANIPVHDKSELQAAEQMVKALGGKENIKSLD
                     NCVTRLRLTIADMGLIDEAAIKRAGGIAVVKLDQNTLQVIIGTKVIALRRDMDNYMGI
                     C"
     gene            complement(1814..2639)
                     /locus_tag="JN125_000567"
                     /pseudo
     CDS             complement(1814..2639)
                     /locus_tag="JN125_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003843851.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
     gene            complement(2898..4151)
                     /locus_tag="JN125_000568"
     CDS             complement(2898..4151)
                     /locus_tag="JN125_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311701.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMIN domain-containing protein"
                     /protein_id="HAY8870442.1"
                     /translation="MSGSNTAISRRRLLQGAGAMWLLSVSQVSLAAVSQVVAVRVWPA
                     SSYTRVTVESNRQLKYKQFALSNPERVVVDIEDVNLNSVLKGMAAQIRADDPFIKSAR
                     VGQFDPQTVRMVFELKQNVKPQLFALAPVAGFKERLVMDLYPANAQDMQDPLLALLED
                     YNKGDLEKQVPPAQSGPQPGKAGRDRPIVIMLDPGHGGEDSGAVGKYKTREKDVVLQI
                     ARRLRSLIEKEGNMKVYMTRNEDIFIPLQVRVAKAQKQRADLFVSIHADAFTSRQPSG
                     SSVFALSTKGATSTAAKYLAQTQNASDLIGGVSKSGDRYVDHTMFDMVQSLTIADSLK
                     FGKAVLNKLGKINKLHKNQVEQAGFAVLKAPDIPSILVETAFISNVEEERKLKTATFQ
                     QEVAESILAGIKAYFADGATLARRG"
     gene            4382..5713
                     /gene="argA"
                     /locus_tag="JN125_000569"
     CDS             4382..5713
                     /gene="argA"
                     /locus_tag="JN125_000569"
                     /EC_number="2.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino-acid N-acetyltransferase"
                     /protein_id="HAY8870443.1"
                     /translation="MVKERKTELVEGFRHSVPYINTHRGKTFVIMLGGEAIEHENFSS
                     IVNDIGLLHSLGIRLVVVYGARPQIDANLAVHHHEPLYHKNIRVTDAKTLELVKQAAG
                     TLQLDITARLSMSLNNTPLQGAHINVVSGNFIIAQPLGVDDGVDYCHSGRIRRIDEDA
                     IHRQLDSGAIVLMGPVAVSVTGESFNLTSEEIATQLAIKLKAEKMIGFCSSQGVTNDD
                     GDIVSELFPNEAQARVEAQEEKGDYNSGTVRFLRGAVKACRSGVRRCHLISYQEDGAL
                     LQELFSRDGIGTQIVMESAEQIRRATINDIGGILELIRPLEQQGILVRRSREQLEMEI
                     DKFTIIQRDNTTIACAALYPFPEEKIGEMACVAVHPDYRSSSRGEVLLERIAAQAKQS
                     GLSKLFVLTTRSIHWFQERGFTPVDIDLLPESKKQLYNYQRKSKVLMADLG"
     gene            complement(5775..7601)
                     /locus_tag="JN125_000570"
     CDS             complement(5775..7601)
                     /locus_tag="JN125_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RecBCD enzyme subunit RecD"
                     /protein_id="HAY8870444.1"
                     /translation="MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSH
                     DAGEGHVCLPLSRLENNEASHPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMIL
                     CGDRLYLNRMWCNERTVARFFNEVNHAIEVDEALLAQTLDKLFPVSDEINWQKVAAAV
                     ALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK
                     ALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDL
                     PMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTG
                     THVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD
                     IEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFG
                     VAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT
                     RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELV
                     YTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSSRE"
     gene            complement(7601..11143)
                     /gene="recB"
                     /locus_tag="JN125_000571"
     CDS             complement(7601..11143)
                     /gene="recB"
                     /locus_tag="JN125_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708611.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit beta"
                     /protein_id="HAY8870445.1"
                     /translation="MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGL
                     GGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLE
                     EIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLR
                     YQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDDETL
                     ASRHAQIVARIATVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIDKISAWAEEE
                     TNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLVITRALAE
                     IRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQ
                     QYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSA
                     PGMVNSVNKLFSQTDDAFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES
                     CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ
                     VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLN
                     ALDIETLNNDEHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGER
                     RLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVT
                     IHKSKGLEYPLVWLPFITNFRVQDQAFYHDRHSFEAVLDLNAAPKSVDLAEVERLAED
                     LRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTC
                     IEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGH
                     GIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNW
                     VQEKLELGGFESQWEPMLTEWITAVLQAPLNEKGVSLSQLSDRDKQVEMEFYLPISEP
                     LIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE
                     DSSVYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYDRHFGGVIYLFLRGV
                     DKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEEA"
     gene            complement(11136..14024)
                     /gene="ptrA"
                     /locus_tag="JN125_000572"
     CDS             complement(11136..14024)
                     /gene="ptrA"
                     /locus_tag="JN125_000572"
                     /EC_number="3.4.24.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pitrilysin"
                     /protein_id="HAY8870446.1"
                     /translation="MPRSTWFKALLLLVALWAPLSQAETGWQPIQETIRKSDKDNRQY
                     QAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYP
                     QADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAE
                     RERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQAL
                     KDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKG
                     IIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVE
                     GISANSDPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDEL
                     ANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLAMMT
                     PQNARIWYISPKEPHNKTAYFVDAPYQVDKISEQTFADWQQKAANIALSLPELNPYIP
                     DDFSLIKSEKKYDHPELIVDESNLRVVYAPSRYFSSEPKADVSLILRNPKAMDSARNQ
                     VMFALNDYLAGLALDQLSNQASVGGISFSTNANNGLMVNANGYTQRLPQLFQALLEGY
                     FSYTATEDQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSI
                     TLKEVLAYRDALKSGARPEFMVIGNMTEAQATTQARDVQKQLGADGSEWCRNKDVVVD
                     KKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIVQPWFYNQLRTEEQLG
                     YAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFAQIQQ
                     AVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVV
                     EPQGMAILSQISGSQNGKAEYVHPEGWKVWENVSALQQTMPLMSEKNE"
     gene            complement(14200..17568)
                     /gene="recC"
                     /locus_tag="JN125_000573"
     CDS             complement(14200..17568)
                     /gene="recC"
                     /locus_tag="JN125_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease V subunit gamma"
                     /protein_id="HAY8870447.1"
                     /translation="MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQ
                     WLQMTLSQKFGIAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQL
                     LEHEDFTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPEWLAQWETGHLVEGLGE
                     AQAWQAPLWKALVEYTHELGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISA
                     LPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPL
                     FRDSENAGQLFNSDGEQDVDNPLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNL
                     LHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDR
                     LLAMLEEDPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPV
                     LEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDD
                     DNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLAS
                     LLMQLNIWHRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGL
                     GAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMND
                     GVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGLSIQDNS
                     ERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGE
                     RQSYAREWLPAASRAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVN
                     FRTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGE
                     IFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWHPSLL
                     SVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREG
                     MSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDI
                     WYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS"
     gene            complement(17581..17904)
                     /locus_tag="JN125_000574"
     CDS             complement(17581..17904)
                     /locus_tag="JN125_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HAY8870448.1"
                     /translation="MSASLKNQQGFSLPEVMLAMVLMVMIVTALSGFQRTLMNSLASR
                     NQYQQLWRHGWQQTQLRAISPPANWQVNRLQTSQAGCVSISVTLVSPGGREGEMTRLH
                     CPNRQ"
     gene            complement(17889..18296)
                     /locus_tag="JN125_000575"
     CDS             complement(17889..18296)
                     /locus_tag="JN125_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2509 family protein"
                     /protein_id="HAY8870449.1"
                     /translation="MNREKGVSSLALVLMLLVLGSLLLQGMSQQDRSFASRVSMESQS
                     LRRQAIVQSALAWGKMHSWQTQPAVQCSQYAETDAQVCLRLLADNEALLIAGYEGVSL
                     WRTDEVIDGNIVFSPSGWSDFCPLKERALCQLP"
     gene            complement(18293..18856)
                     /locus_tag="JN125_000576"
     CDS             complement(18293..18856)
                     /locus_tag="JN125_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent protein"
                     /protein_id="HAY8870450.1"
                     /translation="MPVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRK
                     LALEDEIWLRVFTVAKHLQRAGYCHGICTGEGLEIVGQGDCIIVQWDANSNGIWDREP
                     VKESDQIGFRLKEHVLETLRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVL
                     TVNMRAASKSEPQTVVNASYSVTGFNL"
     gene            complement(18847..19317)
                     /locus_tag="JN125_000577"
     CDS             complement(18847..19317)
                     /locus_tag="JN125_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase-dependent protein"
                     /protein_id="HAY8870451.1"
                     /translation="MKTQRGYTLIETLVAMLILVMLSASGLYGWQYWQQSQRLWQTAS
                     QARDYLLYLREDANWHNRDHSISVIREGTLWCLVSSAAGANTCHGSSPLVFVPRWPEV
                     EMSDLTPSLAFFGLRNTAWAGHIRFKNSTGEWWLVVSPWGRLRLCQQGETEGCL"
     gene            complement(19502..20296)
                     /gene="thyA"
                     /locus_tag="JN125_000578"
     CDS             complement(19502..20296)
                     /gene="thyA"
                     /locus_tag="JN125_000578"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HAY8870452.1"
                     /translation="MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPL
                     VTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWP
                     TPDRRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS
                     CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHL
                     QLSREPRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGIKAPVAI"
     gene            complement(20303..21178)
                     /gene="lgt"
                     /locus_tag="JN125_000579"
     CDS             complement(20303..21178)
                     /gene="lgt"
                     /locus_tag="JN125_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HAY8870453.1"
                     /translation="MTSSYLHFPEFDPVIFSIGPVALHWYGLMYLVGFIFAMWLATRR
                     ANRPGSGWTKNEVENLLYAGFLGVFLGGRIGYVLFYNFPQFMADPLYLFRVWDGGMSF
                     HGGLIGVIVVMIIFARRTKRSFFQVSDFIAPLIPFGLGAGRLGNFINGELWGRVDPNF
                     PFAMLFPGSRTEDILLLQTNPQWQSIFDTYGVLPRHPSQLYELLLEGVVLFIILNLYI
                     RKPRPMGAVSGLFLIGYGAFRIIVEFFRQPDAQFTGAWVQYISMGQILSIPMIVAGVI
                     MMVWAYRRSPQQHVS"
     gene            complement(21329..23575)
                     /gene="ptsP"
                     /locus_tag="JN125_000580"
     CDS             complement(21329..23575)
                     /gene="ptsP"
                     /locus_tag="JN125_000580"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HAY8870454.1"
                     /translation="MLTRLREIVEKVASAPRLNEALNILVTDICLAMDTEVCSVYLAD
                     HDRRCYYLMATRGLKKPRGRTVTLAFDEGIVGLVGRLAEPINLADAQKHPSFKYIPSV
                     KEERFRAFLGVPIIQRRQLLGVLVVQQRELRQYDESEESFLVTLATQMAAILSQSQLT
                     ALFGQYRQTRIRALPAAPGVAIAEGWQDATLPLMEQVYQASTLDPALERERLTGALEE
                     AANEFRRYSKRFAAGAQKETAAIFDLYSHLLSDTRLRRELFAEVDKGSVAEWAVKTVI
                     EKFAEQFAALSDNYLKERAGDLRALGQRLLFHLDDANQGPNAWPERFILVADELSATT
                     LAELPQDRLVGVVVRDGAANSHAAIMVRALGIPTVMGADIQPSVLHRRTLIVDGYRGE
                     LLVDPEPVLLQEYQRLISEEIELSRLAEDDVNLPAQLKSGERIKVMLNAGLSPEHEEK
                     LGSRIDGIGLYRTEIPFMLQSGFPSEEEQVAQYQGMLQMFNDKPVTLRTLDVGADKQL
                     PYMPISEENPCLGWRGIRITLDQPEIFLIQVRAMLRANAATGNLNILLPMVTSLDEVD
                     EARRLIERAGREVEEMIGYEIPKPRIGIMLEVPSMVFMLPHLAKRVDFISVGTNDLTQ
                     YILAVDRNNTRVANIYDSLHPAMLRALAMIAREAEIHGIDLRLCGEMAGDPMCVAILI
                     GLGYRHLSMNGRSVARVKYLLRRIDFAEAENLAQRSLEAQLATEVRHQVAAFMERRGM
                     GGLIRGGL"
     gene            complement(23588..24118)
                     /gene="rppH"
                     /locus_tag="JN125_000581"
     CDS             complement(23588..24118)
                     /gene="rppH"
                     /locus_tag="JN125_000581"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001655775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HAY8870455.1"
                     /translation="MIDDDGYRPNVGIVICNRQGQVMWARRFGQHSWQFPQGGINPGE
                     SAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLL
                     QLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVVMSLQE
                     NTPKPQNTSAYRRKRG"
     gene            24803..25492
                     /gene="mutH"
                     /locus_tag="JN125_000582"
     CDS             24803..25492
                     /gene="mutH"
                     /locus_tag="JN125_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutH"
                     /protein_id="HAY8870456.1"
                     /translation="MSQPRPLLSPPETEEQLLAQAQQLSGYTLGELAALAGLVTPENL
                     KRDKGWIGVLLEIWLGASAGSKPEQDFAALGVELKTIPVDSLGRPLETTFVCVAPLTG
                     NSGVTWETSHVRHKLKRVLWIPVEGERSIPLAQRRVGSPLLWTPNEEEDRQLREDWEE
                     LMDMIVLGQVERITARHGEYLQIRPKAANAKALTEAIGARGERILTLPRGFYLKKNFT
                     SALLARHFLIQ"
     gene            25561..26274
                     /locus_tag="JN125_000583"
     CDS             25561..26274
                     /locus_tag="JN125_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HAY8870457.1"
                     /translation="MLFAWITDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQ
                     RAHARRLGLAGAMVMRLALLASIAWVTRLTNPLFTIFSQEISARDLILLLGGLFLIWK
                     ASKEIHESIEGEEEGLKTRVSSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAA
                     VVIAVGVMMFAARSIGDFVERHPSVKMLALSFLILVGFTLILESFDIHVPKGYIYFAM
                     FFSIAVESLNLIRNKKNPL"
     gene            26412..26630
                     /gene="ygdR"
                     /locus_tag="JN125_000584"
     CDS             26412..26630
                     /gene="ygdR"
                     /locus_tag="JN125_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein YgdR"
                     /protein_id="HAY8870458.1"
                     /translation="MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDD
                     DTGLVSYHDQQGNAMQINRDDVSQIIER"
     gene            26738..27778
                     /locus_tag="JN125_000585"
     CDS             26738..27778
                     /locus_tag="JN125_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP(H)-dependent aldo-keto reductase"
                     /protein_id="HAY8870459.1"
                     /translation="MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGI
                     NLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPD
                     QALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDT
                     LDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPSIVTIQNPYSLLNRSFEVG
                     LAEVSQYEGGELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAA
                     YVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIESLHLELSEDVLAEI
                     EAVHQVYTYPAP"
     gene            complement(27810..29003)
                     /gene="lplT"
                     /locus_tag="JN125_000586"
     CDS             complement(27810..29003)
                     /gene="lplT"
                     /locus_tag="JN125_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid transporter LplT"
                     /protein_id="HAY8870460.1"
                     /translation="MSESVHTNTSLWSKGMKAVIVAQFLSAFGDNALLFATLALLKAQ
                     FYPEWSQPILQMVFVGAYILFAPFVGQVADSFAKGRVMMFANGLKLLGAASICFGINP
                     FLGYTLVGVGAAAYSPAKYGILGELTTGSKLVKANGLMEASTIAAILLGSVAGGVLAD
                     WHVLVALAACALAYGGAVVANIYIPKLAAARPGQSWNLINMTRSFLNACTSLWRNGET
                     RFSLVGTSLFWGAGVTLRFLLVLWVPVALGITDNATPTYLNAMVAIGIVVGAGAAAKL
                     VTLETVSRCMPAGILIGVVVLIFSLQHELLPAYALLMLIGVMGGFFVVPLNALLQERG
                     KKSVGAGNAIAVQNLGENSAMLLMLGIYSLAVMVGIPVVPIGIGFGALFALAITALWI
                     WQRRH"
     gene            complement(28996..31155)
                     /gene="aas"
                     /locus_tag="JN125_000587"
     CDS             complement(28996..31155)
                     /gene="aas"
                     /locus_tag="JN125_000587"
                     /EC_number="2.3.1.40"
                     /EC_number="6.2.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acyl-ACP--phospholipid
                     O-acyltransferase/long-chain-fatty-acid--ACP ligase"
                     /protein_id="HAY8870461.1"
                     /translation="MLFSFFRNLCRVLYRVRVTGDTQALKGERVLITPNHVSFIDGIL
                     LGLFLPVRPVFAVYTSISQQWYMRWLKSFIDFVPLDPTQPMAIKHLVRLVEQGRPVVI
                     FPEGRITTTGSLMKIYDGAGFVAAKSGATVIPVRIEGAELTHFSRLKGLVKRRLFPQI
                     TLHILPPTQVAMPDASRARDRRKIAGEMLHQIMMEARMAVRPRETLYESLLSAMYRFG
                     AGKKCVEDVNFTPDSYRKLLTKTLFVGRILEKYSVEGERIGLMLPNAGISAAVIFGAI
                     ACRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLE
                     DLKADVTTADKVWIFAHLLMPRLAQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILA
                     NVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPEL
                     VYDRSCTVLFGTSTFLGHYARFANPYDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL
                     EGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLSVPGIEEGGRLQLKGPNIMNG
                     YLRVEKPGVLEVPTAENVRGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMV
                     SLEMVEQLALGVSPDKVHATAIKSDASKGEALVLFTTDNELTRDKLQQYAREHGVPEL
                     AVPRDIRYLKQMPLLGSGKPDFVTLKSWIDEAEQHDE"
     gene            31544..32575
                     /gene="galR"
                     /locus_tag="JN125_000588"
     CDS             31544..32575
                     /gene="galR"
                     /locus_tag="JN125_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator GalR"
                     /protein_id="HAY8870462.1"
                     /translation="MATIKDVARLAGVSVATVSRVINNSPKASEASRLAVHSAMESLS
                     YHPNANARALAQQTTETVGLIVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHNEQ
                     KERQAIEQLIRHRCAALVVHAKMIPDADLASLMKQMPGMVLINRILPGFENRCIALDD
                     RYGAWLATRHLIQQGHTRIGYLCSNHSISDAEDRLQGYYDALAESGIAANDRLVTFGE
                     PDESGGEQAMTELLGRGRNFTAVACYNDSMAAGAMGVLNDNGIDVPGEISLIGFDDVL
                     VSRYVRPRLTTVRYPIVTMATQAAELALALADNRPLPEITNVFSPTLVRRHSVSTPSL
                     EASHHATSD"
     gene            complement(32582..33844)
                     /gene="lysA"
                     /locus_tag="JN125_000589"
     CDS             complement(32582..33844)
                     /gene="lysA"
                     /locus_tag="JN125_000589"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HAY8870463.1"
                     /translation="MPHSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAALK
                     QFDVVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYNPQTHPDDIVFTAD
                     VIDQATLERVSELQIPVNAGSVDMLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGE
                     NSKHGIWYTDLPAALDVIQRHHLQLVGIHMHIGSGVDYAHLEQVCGAMVRQVIEFGQD
                     LQAISAGGGLSVPYQQGEEAVDTEHYYGLWNAAREQIARHLGHPVKLEIEPGRFLVAQ
                     SGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISALAADGRSLEHAPTVE
                     TVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRSLL
                     PEVLFDNGQARLIRRRQTIEELLALELL"
     gene            33966..34901
                     /gene="lysR"
                     /locus_tag="JN125_000590"
     CDS             33966..34901
                     /gene="lysR"
                     /locus_tag="JN125_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator LysR"
                     /protein_id="HAY8870464.1"
                     /translation="MAAVNLRHIEIFHAVMTAGSLTEAAHLLHTSQPTVSRELARFEK
                     VIGLKLFERVRGRLHPTVQGLRLFEEVQRSWYGLDRIVSAAESLREFRQGELSIACLP
                     VFSQSFLPQLLQPFLARYPDVSLNIVPQESPLLEEWLSAQRHDLGLTETLHTPAGTER
                     TELLSLDEVCVLPPGHPLAVKKVLTPDDFQGENYISLSRTDSYRQLLDQLFTEHQVKR
                     RMIVETHSAASICAMVRAGVGVSVVNPLTALNYAASGLVVRRFSIAVPFTVSLIRPLH
                     RPSSALVQAFSEHLQAGLPKLVTSLDAILSSATTA"
     gene            complement(34888..35580)
                     /gene="ygeA"
                     /locus_tag="JN125_000591"
     CDS             complement(34888..35580)
                     /gene="ygeA"
                     /locus_tag="JN125_000591"
                     /EC_number="5.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid racemase"
                     /protein_id="HAY8870465.1"
                     /translation="MKTIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQVLLHSVD
                     FHEIEECQRRGEWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCTLPFL
                     HIADATGRAITGAGMTRVALLGTRYTMEQDFYRGRLTEQFSINCLIPEADERAKINQI
                     IFEELCLGQFTEASRAYYAQVIARLAEQGAQGVIFGCTEIGLLVPEERSVLPVFDTAA
                     IHAEDAVAFMLS"
     gene            complement(35709..37127)
                     /locus_tag="JN125_000592"
     CDS             complement(35709..37127)
                     /locus_tag="JN125_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar porter family MFS transporter"
                     /protein_id="HAY8870466.1"
                     /translation="MVTINTESALTPRSLRDTRRMNMFVSVAAAVAGLLFGLDIGVIA
                     GALPFITDHFVLTSHLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAILFVLG
                     SIGSAFATSVEMLIAARVVLGIAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLG
                     IVLAFLSDTAFSYSGNWRAMLGVLALPAVLLIILVVFLPNSPRWLAEKGRHIEAEEVL
                     RMLRDTSEKAREELNEIRESLKLKQGGWALFKINRNVRRAVFLGMLLQAMQQFTGMNI
                     IMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVM
                     ALGTLVLGYCLMQFDNGTASSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKC
                     RDFGITCSTTTNWVSNMIIGATFLTLLDSIGAAGTFWLYTALNIAFVGITFWLIPETK
                     NVTLEHIERKLMAGEKLRNIGI"
     gene            complement(37442..>38161)
                     /gene="kduD"
                     /locus_tag="JN125_000593"
     CDS             complement(37442..>38161)
                     /gene="kduD"
                     /locus_tag="JN125_000593"
                     /EC_number="1.1.1.127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase
                     KduD"
                     /protein_id="HAY8870467.1"
                     /translation="VTGCDTGLGQGMALGLAQAGCDIVGINIVEPTETIEQVTALGRR
                     FLSLTADLRKIDGIPGLLDRAVAEFGHIDILVNNAGLIRREDALEFSEKDWDDVMNLN
                     IKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTASKSGVMGVTRLMAN
                     EWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRWGLPSDLMGPIVFLA
                     SSASDYVNGYTIAVDGGWLAR"
BASE COUNT         9588 a        10306 c         9196 g         9071 t
ORIGIN      
        1 tcatcatgct gccaacgact gtaccctaaa atcgggtgtt ccagacgttt ttttaatgtt
       61 ctgatgatag cttccggtat cggaagatcc atatctgaaa tagagaatgg taatacatct
      121 tttacaccaa atctgtcttc acaaaagtcc cattgtgtgc aatatgttcc tttacgagaa
      181 attgaggtat taaaaatatc catcaacata tccccatgta attatccata tcccgacgta
      241 gggcgatgac ttttgtaccg ataatgactt gtaaggtatt ttgatcaagt ttcacaaccg
      301 caattcctcc ggcccttttt attgcagcct catctatcaa tcccatatcc gcgatagtta
      361 aacgcaaacg agttacacaa ttatccagtg atttaatatt ttctttacca cccagagcct
      421 taaccatttg ctccgctgcc tgcaactctg atttatcatg aactgggatg ttagctattg
      481 cagtttcttc gtgagcgttc agcgtgacag gactggactc ttcacggcct acagtcatca
      541 ggttaaattt gagaatggtc caacggaaca caaagtaata aatgaagaaa taagccactt
      601 caacacatac cgctaatggc catcccgttc ttgtgccacg taagacacca aagctaataa
      661 attgaatcag atcgccagta aagcccatct tcacgcccat atatggcaga accatgttag
      721 ccaatccatt cataaaggca tggaagacaa acaacagcgg gctgacaaat aagaacagaa
      781 attcaatcgg ctcgctgacg ccgccaataa ttaccgtgag cacaccggaa atcagcaatg
      841 ctttgatagc ccttctgttt tgagcatgag cagtgcgata catcgccagc gcggcgccag
      901 ccagaccata ctgaatcatc agtttgccct gctccatttt ccccgccaaa tccagcggaa
      961 tgaccgcatt ctctttgacg tatgccataa acatgttcag ggtgccgtaa tactcttcac
     1021 cgccaatcac tgccgatccg ccgattgggg taaagcggaa aactgatgtc accaagtgat
     1081 ttaagccaaa aggtatcgtc acgcgttcgg caacagcata gaagaaataa ccaacaggac
     1141 cggaagttga aatccagtga ccaatgagca tgaaaagatt gaaaaatggc ggccagataa
     1201 aaggaatgat cagaccaaat ccactcatca caatcagtgt aatgataggc acaaggcgtg
     1261 ggccactata aaaccctaat gattcaggaa tacgtaagtt aacgatcttt ttatacatgc
     1321 tggcgactaa taaccctgcc acaatcccac ccaacacgct ggtattgtag gactggatcc
     1381 cgagtatgat ggtttgccca tgtgtcgaca tttggtcagc agctaccaat aagtcgtgct
     1441 gtttaagata aaagttcgtt ccaagatgca tcgccataaa gccaattaag ccagaaaaag
     1501 cgccataggc tttatcatct ttctctttta ataatcccaa aggtatagct atcgcaaaca
     1561 atacaggtaa attaacgaag gcaaacaaac caaggctaac aataaaatca agtatggttt
     1621 taattaacgg aatagccaac actggaatga attttgccat atcatcgctg gctaaaccac
     1681 ttcccagccc taacatcata ccacatacac ttaacagagc gatgggatac ataaatgcct
     1741 tcccaggctc tgaaaaaaac tccaggattt cttttgtttc atactggtta tctcatgaaa
     1801 atgttatgta taattagtcc attaatactt tgatgcgaat agaaagatat agtttctctt
     1861 ccagaatcaa atcatattta aaagttgcgt acagatatct ttcaatttca tgaatggcac
     1921 gttgtaactg aaaatctttt tcaagaaact gctcatagat atcaccaata tttttctgtt
     1981 ttattttttt cattacataa cacacgacta gaaaaatatt taaggtgcat cataaatctg
     2041 gagtagttaa atgaacttct gtccaccctt ctgttataaa caacttcaat aagctccgtg
     2101 attttttgag acagctcaat aatccttact gattcataat caactgaatt ttcataatta
     2161 tttaaaatat gcaatgctat aaaaccaatc tcatcatccg gtagttgaac gctaaattgc
     2221 tcattaatga ttgttaatgc atcacgactt attgcatact ctgctttgta caacgctttg
     2281 atttcctcaa ggaaaacatt attaatttgt atgcctgaga cgactcggga tattgcattc
     2341 gaaatgtgat cagcaagaat cagtagtagc gatggattga gttttttttc gagattactc
     2401 tccgcataat gcactatctt ttcggcaaca aaaatatact caatacccac atgctcaatc
     2461 aatttgtaga gtttattttt ttgctcattt ctgacataaa aaatccggtt tgcaggatgc
     2521 tcagggaccg acataccata ttttttattg taaccaacgc caggcccaga aatgataacc
     2581 tcctgtccgt tcaccgatgc ctgtacacaa ttattgttca tgactttttc gatgatcatt
     2641 ccatggctcc caaaaaaaaa gcaaggcatg tcagaagtaa taattacttc aaacattgcc
     2701 ttgcctgatt taacagttac aagataatta actaatgcgt atactttaca cggaattgtg
     2761 cttaataaaa gagatgacag acttattttt taagccgata ttcaaatatt cgacagcagt
     2821 cacaaaacca tcgttcaaca tttatgtaaa taatatttat tcaatgaaac ataaattcat
     2881 tgaataaatt aaaaacatca tccccttctc gccagcgtcg ccccatcggc aaaatacgct
     2941 ttaatccccg caagaataga ctccgcaact tcctgctgga aagtcgccgt tttcagttta
     3001 cgctcttcct caacgttact gataaacgcc gtttcgacca gaatggaggg aatatctggt
     3061 gcctttagta cggcaaaccc ggcctgttca acttgatttt tatgcagctt gttgatttta
     3121 ccgagcttat tcagtaccgc tttaccaaac ttcaggctgt cggcaatggt cagcgactgc
     3181 accatatcga acatggtgtg gtcgacatag cggtcaccgc ttttgctcac gccaccaatc
     3241 aagtccgagg cgttctgggt ttgtgccaga tattttgccg cagtactggt tgcacctttg
     3301 gttgagagcg caaacacaga ggaaccgctc ggctgacgac tggtaaaggc gtcggcatgg
     3361 atagagacaa acaggtcagc acgctgtttt tgggcttttg ctacgcgcac ttgcaacgga
     3421 atgaagatgt cttcattgcg cgtcatgtac accttcatat tgccctcttt ctcgatcaga
     3481 gagcgcagac ggcgagctat ttgcaatacc acgtcttttt cgcgcgtttt gtatttcccc
     3541 accgcaccgg agtcttcgcc gccgtggcca gggtcaagca taataacaat aggacgatcg
     3601 cgccctgctt tacccggttg tggaccactt tgtgctggcg gcacctgctt ttcgaggtcg
     3661 cctttgttgt aatcctccag cagcgccagc agcgggtcct gcatatcctg tgcattggcc
     3721 ggatagaggt ccatcaccag acgctcttta aacccggcga ccggcgcaag ggcaaacagc
     3781 tgcggtttta cgttttgctt taattcaaaa accatccgta cggtctgcgg gtcaaattgc
     3841 ccgacgcgcg ccgacttgat gaacgggtcg tctgcacgaa tttgtgccgc catccccttg
     3901 agtaccgagt tcaggtttac atcttcgata tccaccacca cgcgttcagg gttactcaac
     3961 gcgaactgct tatatttcag ctgacgattt gattctaccg tcacacgggt gtagctggac
     4021 gcaggccaga cgcgcaccgc cacgacctgg ctgaccgcag ccagactgac ctgacttacg
     4081 ctcaatagcc acatggcacc cgcgccttgc agtaaacgac gacggctgat tgcagtgttg
     4141 gatcctgaca tgcctctccc gagcaaaaga aatctaagct gtgtaacaag taaacgacta
     4201 atttgaccgg aaactttagc gaaagacgca taatctgtca tctaataaac ggtaaacatt
     4261 ctttttatat tcacggcatt actgataaaa aagtcgctct cgcataaaat ttacacttgc
     4321 accctgcgaa aaacagaata aaaatacact aatttagaat aatcatgcaa aggggtgtgc
     4381 cgtggtaaag gaacgtaaaa ccgagctggt cgagggattc cgccattcgg ttccctatat
     4441 caatacccac cggggaaaaa cgtttgtcat catgctcggc ggtgaagcca ttgagcatga
     4501 gaatttctcc agtatcgtta atgatatcgg gttgttgcac agcctcggca tccgtctggt
     4561 ggtggtctat ggcgcacgtc cgcagatcga cgcaaatctg gccgtgcatc accacgaacc
     4621 gctgtatcac aagaatatac gtgtgaccga cgccaaaaca ctggaactgg tgaagcaggc
     4681 tgcgggaaca ttgcaactgg acatcactgc tcgcctgtcg atgagtctca ataacacgcc
     4741 gctacagggc gcgcatatca acgtcgtcag tggcaatttt attattgccc agccgctggg
     4801 cgtcgatgac ggcgtggatt actgccatag cgggcgtatc cggcggattg atgaagacgc
     4861 gatccatcgt caactggaca gcggtgcaat agtgctaatg gggccggtcg ctgtttcagt
     4921 cactggcgag agctttaatc tgacctcgga agagattgcc actcaactgg ccatcaaact
     4981 gaaagctgag aagatgattg gtttttgctc ttcacagggc gtcactaatg acgacggtga
     5041 tattgtctca gaacttttcc ctaacgaagc gcaagcgcgg gtagaagccc aggaagagaa
     5101 aggcgattac aactccggta cggtgcgctt tttgcgtggc gcagtgaaag cctgccgcag
     5161 cggcgtgcgt cgctgtcatt taatcagtta tcaggaagat ggcgcgctgt tgcaagagtt
     5221 gttctcacgc gacggtatcg gtacgcagat tgtgatggaa agcgccgagc agattcgtcg
     5281 cgcaacaatc aacgatattg gcggtattct ggagttgatt cgcccgctgg agcagcaagg
     5341 tattctggtg cgccgttctc gcgagcagct ggagatggaa atcgacaaat tcaccattat
     5401 tcagcgcgat aacacgacta ttgcctgcgc cgcgctctat ccgttcccgg aagagaagat
     5461 tggggaaatg gcctgtgtgg cagttcaccc ggattaccgc agttcatcac ggggcgaggt
     5521 tctgctggaa cgcattgccg ctcaggcgaa gcagagcggc ttaagcaaat tgtttgtgct
     5581 gaccacgcgc agtattcact ggttccagga acgtggattt accccggtgg atattgattt
     5641 actgcccgag agcaaaaagc agttgtacaa ctaccagcgt aaatccaaag tgttgatggc
     5701 ggatttaggg taagcgatga aaattgtcgg atgcgacatg cgtaacactc gtgcgtcgca
     5761 tccggcaatt acgtttattc ccgcgaacta aacaacgccg ccagaccact gcgccgctca
     5821 gtacgagtgg cgattgccgc acttaatata cgctcatcgg catacagcga cagacggcga
     5881 cgcgcgcggg tcaccgcggt gtataccagc tctcgcgtta ctaccggcgt gcgttggctc
     5941 ggtaaaatca acgccgcatg gtcgaactcc gatccctgcg atttatgtac cgtcatcgcc
     6001 cacgtagttt cgtgctctgg caagcgactc ggttgcacag acttaatatt gccgtccggc
     6061 atcgcaaacc agacgcgcgt cccctgcccg cgatccagtg caataccgat atcgccatta
     6121 aacaacccaa gcgcgctgtc attacgggca atcatcaccg gtcgaccttc gtaccaacga
     6181 gagtgcggat gacgatgaat tttgcgcttc tgttgcataa actgctcaat tcgctcattc
     6241 agtccagcca cgccaaacgg cccttcccgc agggcgcaca aaagttggta ctcattgaac
     6301 gcctgaatga ttaaatccgg ctcggcacgc gcttgcagca gatccagata acgtccataa
     6361 cccgcaagag cttcctcaag catcgcaata taatcttcgc cgctctgtaa aagtcgtttt
     6421 tcgatatcag taaaatcctg ctgaaaaacg gttttcactg ccgttttatc accacggttg
     6481 atcgccgcag ctaactgacc aatgccagaa tcgctgccga aacgatagct tttttgcagc
     6541 aggcagagac tgtcgcgcaa agatgccgct tctgtgccgg ttcctgccgg aacgtgagtc
     6601 cccgtcaggc ggcttagctg cctggcacgc tcggcggtaa agcccgcgtt ggcataagcg
     6661 cagatatcgc ccagcacagc cccagcctca accgaggcca gttgatcacg atcgccgaga
     6721 aagatcactc gcgcatgatc gggcaaggcg tcgatcagtc tcgacatcat aggcagatcg
     6781 atcattgacg cttcatctac caccagcaca tcaagatgca gcgggttacc ggcatgatga
     6841 cgtaaacgct ggctacccgg ctgcgcgccc agcaatcggt gcaaagtgct ggcatcttcc
     6901 ggaatgcgtt tcttttgttc atcggtcagc ggtaactgtc gcaaagcctt gccgagagat
     6961 tcggttaagc gcgcggcagc tttacccgtt ggtgcagcca gacggatacg gcagcgttcg
     7021 ccgtcggcca tttgaattaa cgctgccagc aacttcgcca cggtggtcgt tttaccggtg
     7081 cctgggccgc cggaaatcac cgagatccgc cgcgtcagcg ccactgccgc tgcaactttt
     7141 tgccagttaa tttcatcgct tactggaaaa agtttgtcca gggtttgcgc cagtagagct
     7201 tcatcaacct caatggcatg attcacctca ttgaagaagc gcgctaccgt ccgctcgtta
     7261 caccacatgc gattcaaata aagacgatcg ccacagagga tcatcggcgt gggttcatct
     7321 cccctgctga ccgcttgaga agccagcaag cattcttccc aattttgtag ctcaccgatt
     7381 tcactgacac aggtcgccaa cagcggatgc gacgcctcgt tattttccag tcgtgaaagc
     7441 ggcaaacaga cgtgtccctc tccggcatca tgacttaaca gtgccgccgc gagggtgacg
     7501 gcaggatgtt catctcccgc cacggtcagg gcaaattgca catccagcgg gcgtagctgt
     7561 ttgtgctcca cagcttccag taattgcttt tgcaatttca ttacgcctcc tccagggtca
     7621 taccggcaaa catctcatcc atcagggcaa tcaacccggc gttgggtcgg gttgtgtaaa
     7681 tcccttgttg cggatgttct ttatcaacgc cacgcaggaa cagatagata acgccgccaa
     7741 agtgacgatc atagtcgtaa tcagcaatgc gatggcgcag ataacgatgc agcgccaggg
     7801 tataaagctg atattgcaga tcatagcggt gtgcctgcat cgctgctgcc atagcctgtt
     7861 gggtgtaaac cgaactgtct tcacccagcc agttggattt atagtcgagc aggtaataac
     7921 gcccttcgtg gcggaatact aggtcgataa agccttttaa catgccgcgt acctgcatga
     7981 actccagcgg cgggcagcca gcggatagcg ggtcaaactg gcgaattagt gcatcaagct
     8041 ggctggcgat gagcggttcg ctaatcggca ggtaaaactc catctccacc tgtttatcgc
     8101 ggtcggaaag ctgactcagg ctaacaccct tttcattgag aggtgcctgg aggacagccg
     8161 tgatccactc ggtcaacatc ggttcccact gcgattcaaa gccgccgagt tccagttttt
     8221 cctgtaccca gttcgggtca accggctggg taaaatcgag gtcttcaaac aaactgtgca
     8281 agaatgtccc cggtgacgca ccgcgcggga actgatgcgg tgttaacgtc ggttcttcaa
     8341 cgacgctgac cacgcctgcg gcatcaacat ccagccgtgg catcagatcc tgagcgatac
     8401 cgtgaccacg ctgctgcaag ccggagtagc tggtgacacg ccagttatcg ccgggcaatc
     8461 gttgtagtgt cctcgcattc agttctgcag ttaaagcatc attaacctgc cagggctggt
     8521 tatcaccagt ttgtgccgtt tgccaggcaa tatcatcatc gcataacgct tcaatacagg
     8581 tgcgaagccc tgccgcatct tgcggttccc ctttttgcag caaacgcccg agcgcacttt
     8641 ggtggacgtc ggtgtcacct tttttatcgc cacgacggcg caccagcggt gcaacgccga
     8701 gactgcaatg ccaaaccgaa cgcgttagcg ccacgtaaag caaacgcaga tcttccgcca
     8761 gacgttcgac ctccgcgagg tcgacgcttt ttggcgcagc attaagatcc aaaactgcct
     8821 caaacgagtg gcgatcgtga taaaacgcct gatcctggac gcggaaattg gtaataaatg
     8881 gcaaccagac cagcggatat tccagccctt tcgatttatg gatcgtgaca atctgcacca
     8941 gatgtttatc actttcgagg cgcatttgtt ggctggaggc attactgtct ggctcgagga
     9001 tatgttgcga taaccagcgt accagcgcat gttcactttc cagctgcgtt ccggcttctt
     9061 gtagcagttc gctgatatgc aagatatcgg taagacgccg ctcaccgcct gccgttgcca
     9121 gcaagttttc tgcaatgtta cgcgccgaca tcagcgcccg cagcatcggc ataacgccac
     9181 gtttgcgcca gatttgccga taaccatcga actcttcaac taccgcatcc cacgcatgtt
     9241 cgtcattatt cagcgtttcg atatccagcg cgttcagccc catcattgac gttgccagcg
     9301 cactacgcag ggtgttctca cgttcgggcg tcatcaccgc ctgcaataac caaagcattt
     9361 cctgcgcttc cagagtttca aaaacactgt cgcggttcga aaggtaaacg gaagggattt
     9421 ccagcaacgt taaggcatcg cgcacctggg cggcctcctg gcggctgcgc accagcacac
     9481 tgatgtccga agcacgcacc ggacgcgcgt cgtcgccgtt catcagcaac gcttcgcccc
     9541 gctgtccggc ttgtagccag tcgcggattt gcgcagcaca tacctgcgcc atggtacttt
     9601 gatagtcgcc aacgccgcag ctttcgcctt ccatcagcca cattttcatc gcaggctgcg
     9661 tttcaccttt aaatacaaaa cgtaacgcct gatttttccc ggctgatttc actggaataa
     9721 acggtatttc gcgaaacatg aacgcgtcat cagtctggct gaaaagcttg ttcacactgt
     9781 tcaccattcc aggtgcggag cgccagttgg tgtctaaagt gtagtgggcg tgaacttcac
     9841 tacgcgcctt catataagtg aagatatccg caccccggaa tgcatatatg gcctgcttcg
     9901 ggtcgccaat cagcaacaat gcggtttccg gctgatggtg ccagatacgg cgaaaaattc
     9961 ggtactgctg ggggtcggta tcctgaaatt catcgatcat tgccaccggg aatcgcgtac
    10021 ggatcgccgc tgccaacacc tcaccgcttt cgctacgcag cgcggaatcg agccgactta
    10081 acatgtcatc aaaacccaat tcgccacggc ggcgtttttc acgcgctact gtttcgcgga
    10141 tctcagccaa tgcgcgggtg atcaccagat cgcggatcga caatggttct gcaagcagtt
    10201 gatcgatcgc ctcaaacagt ggatgtcgcg gggtttcccc cccggctttc gtgcgatctt
    10261 ctaagaaacg ctgggagaat ttttccagcg actccggcaa ctgataactg ttggtctctt
    10321 cttctgccca ggcgctgatc ttgtcgatcc atttagcctg attgctacgg ttaaacttgc
    10381 gtcgatcaat accagaagat tcgatcagcg catccagttc acccactgcg tcgcgccact
    10441 gctgttttac cgtagcaata cgcgccacaa tttgcgcgtg gcgggaagcc agcgtttcat
    10501 catcgggcgg cggtgctttg ataaccggcg cttcgccttg cagataacga ttaatatcgc
    10561 gcagcaacgc ctgcggccct ttccaggttt caaagacgac ctgggctatt tcacgcggca
    10621 gcgggtagca gtggcgacgc cagaaatcgg cgcaggcctg gtaacgtagc agagactcat
    10681 cttcaatcag ctgctgctca aacagcatgc cggattcaaa ggcattcagg ttgagcatgc
    10741 gctggcaaaa accgtgaata gtaaagactg ccgcttcatc catctgccgt tcggctaaca
    10801 acaaccactg cgcggcttgc gctttatcgt cgatctcttc cagcagacgt tcgtacagtg
    10861 gattgtcggt agtttcacgc agacaggcga tgcgcaactc atggatattg ctacggatac
    10921 gaccacgcaa ttctgccgtg gcagcctcgg taaaggtgac caccagcagt tcttcaacgg
    10981 tcagcgggcg gggaaaggcg gcggaaccgc ctagtccaag taacaggcgc aaatagagcg
    11041 ccgcaatcgt aaaggttttg cctgtgccgg cagaggcttc aatcaggcgc tcaccctgta
    11101 agggcaagcg caaaggatct agtgtctcgg cgacatcact cattcttttc actcatcagg
    11161 ggcattgttt gctgcaacgc gctgacgttc tcccacactt tccagccttc agggtgtaca
    11221 tattcggctt tcccgttctg gctgccggaa atctgcgaca gaatagccat gccttgcggc
    11281 tcgaccaccg cctgatggaa gaaatcagca agtttttgcg gcgtcagcag ttttatctgg
    11341 gccacgattt tatcacgcga atcgaagcgc atattgccgc gatcgaaatc tttacttaac
    11401 ttcgatgctt cttcgccgag cgtttgcggt gcctgcagca tctgggtaat taccgcctgc
    11461 tggatttgcg caaactcatc tggcttcatc gctcgcaatt ttgcctctgc ggttgggaaa
    11521 aacgccttgt aacgctccca caagaatgaa ggctgtttat cattgctttg caaaaggaag
    11581 cccatgcccc actgacgccc cacgctcatt ggaaacgcaa acacggcata gcccaattgt
    11641 tcttcggtac gcaactgatt gtagaaccac ggctgtacga tctgccccaa cagagagcta
    11701 taggctgagc tggtgtattc atcgtagcca gtcggtacaa ataccgctgc cagtgcggag
    11761 tcggtgctgt taccggcttt ttcaaagatg acggattgtt ttttatcgac cactacatct
    11821 ttgtttcgac accactctga accatcagcg cccaactgtt tttgcacatc gcgtgcctgc
    11881 gttgttgcct gggcctcggt catgttgccg ataaccataa actctggtcg agcccctgat
    11941 tttaaggcgt cgcgataggc cagcacctct ttcaacgtaa tggagggcaa aattttacgc
    12001 cgttcatctc gcgagaagta cggcacttgc gagagcatct gcgcgggcat aatcgcctgc
    12061 tcaaacgctt tacccttttc tgcggaatcc atcatctggt tataccaaga cttcgcctgc
    12121 tcaagctgat cttccgtagc ggtatagcta aagtacccct cgagcaatgc ctggaacagc
    12181 tgcggcagac gctgggtgta accattagca ttaaccataa ggccgttgtt agcgttggtg
    12241 gaaaaactta tgccaccaac cgacgcctgg ttgcttaact gatcaagcgc cagccctgcg
    12301 agataatcat tgagcgcaaa catcacctga ttgcgggcgc tgtccatggc tttcggatta
    12361 cgcaaaatca ggctgacatc agctttgggt tcgctggaaa aataacggct tggcgcatac
    12421 accacgcgca gattcgactc atcaacaatc agctctggat ggtcatattt cttctctgac
    12481 ttaatcagcg agaaatcgtc aggaatatag gggttaagct ccggtaagga gagcgcaata
    12541 ttggcagctt tttgctgcca gtcagcgaaa gtttgttcgc tgattttatc gacctgatac
    12601 ggcgcatcga caaaataagc cgttttattg tgcggctctt tcgggctgat ataccagata
    12661 cgcgcattct gcggcgtcat catcgccaga cgttctttta ctgctttagc atcgtaccga
    12721 tcggcaatat tgactgcatc cagcgtatgc tcaaccggaa cgcgaatcat ggtatctgcc
    12781 agccattcga cgtaatccat atcacgggtg atcgacggat aacggaagtc gatatccagc
    12841 acattcgcca gttcatcgaa gtattgttta tcaatgcctt tttcacgtaa cagattgaga
    12901 tagctaaaaa ttgccgccac aacctgatcg cgattagcca ggcctttatc ggttaaagac
    12961 gcagagatcg ctaatacgcc gctgttgccg ttgacgatag gatcggagtt ggcgctaatg
    13021 ccctcaacta atccctgctt ttgcagccag tcggaaagtg tacctgggct gcgattacca
    13081 atcagatagg taatcaattc atccgtttta ctacggaact tcgctgagtt gttatcgatg
    13141 cgaaactcaa cgcgcagaac tttacgcggc agtgccggga cgtaatgaat gataatgccc
    13201 ttttgcgcgt cggtgactac cggcacggtg atttccggtt ttttgctctc tttgttcggc
    13261 acgcgaccaa aggtgtccgc cgccattttt gccaactccg gcagcggttt attgctgtaa
    13321 ataaccgcct tcatcagatt ggcggaatag tacttctcgt ggaaatcttt cagcgcctgc
    13381 tgcaccggat taccaggttt atcgcttaaa gtttcgaggt taccaccaga aaactttgaa
    13441 ccggggtgtg ccgggttaat ggtttctgcg ctgacctgtg ccatgcgcat cccgtcacgc
    13501 gtacgcgcca tggttaattc agcgttcacc gcattacgct cacgttcggc atatttcttg
    13561 tcgagcaaag gttcagcaat agcatcggcc aggcggtcta ccgcaccagg caaggcgtcg
    13621 ttctcaactt ccagatagaa agccgtgcga tacggcgcag tgctggcatt gtgactaccg
    13681 ccgtgcattt tgagatattc ggccagactg tcagcctgcg ggtacttttt cgaccccatc
    13741 agactcatat gttcaaggta atgtgccagc ccctggtacg cctcgggatc ttccagcgac
    13801 ccaacgggca ccaccagcgc cgagagcgat ttaactgcct gcggatcaga aaccagcaag
    13861 accaccatac cgttatccag acgtatagcc tgatactggc ggttatcttt atcactttta
    13921 cggatggttt cctgaatcgg ctgccatccc gtttctgcct gacttaaggg tgcccaaagg
    13981 gcaactaaca acaataatgc tttgaaccaa gtgctgcggg gcattcacgg acctcataat
    14041 caacttaatt ttctgtccag attcaacacg ttaacgcaaa tcatctgcca gaatttaatc
    14101 ttgtgctgca cgagtcagcc tatgtttata taaccatcag tccgtgactg gtgcgcatca
    14161 taaagtaagc ggatagattg cgcaattttt atacagcact catgactgat taaagcgaaa
    14221 cagcggtaac aggaaacgtt gcgactgttc aacgatggcc tccattgtct ctggtgttaa
    14281 ttgccgccag agcctttgat accagatatc atcaccttcg ccacgcacca tcatgttgcc
    14341 ttcgtaagcc tgaaggaatt tcgtacgggc tttttgcaac gtggaatcgt catccagcat
    14401 ggcatcgttt tgcgcgtcat aacaggtttt tagccacgcg ccgccacttt caggtaacac
    14461 cagcaatggc gcggacatcc cttcacgata cccctcaatc agttgtgaga ggtaatgcaa
    14521 agcctgttcg gctgcaagcg gcggaaaacg ccactcgccg tctttgcgta gaaaaaggcg
    14581 actttcacca ttaccaccgc tggcacagta gacaaggtgt tccagccaaa gttgcattcc
    14641 ctgcgccaca cttaataaag agggatgcca gcgcaacagg ccatccggct gcacctgcgg
    14701 caaccagcca gttatctgca caccgttgca ggcgagatca atttccatac tctgccccgg
    14761 ctggcgacag gcaatgactc tgtcggcaag ctgctgcatc tcctggcact gagtttccca
    14821 gaaaatttca ccaaaagcgc catacggtaa atcccctgcc gcccggaagc gacggaacaa
    14881 gcgttcggca tcatcctgct caaccagtgc attcaataac tgctgattga tttgataacg
    14941 gctaagccct tccagaataa atggctcggt gtcggggatt tcgctgtctt cggtacggaa
    15001 gttcacctgc aaacgcatct ggaaaaatgc ccgcaccgga tgtgcccaga atcgttgtag
    15061 cgtttccagc ggcacggttt ccggtaaggt aaacggcagc ggctgaacaa attcagaatg
    15121 tgctttacca gcccggctgg ccgcaggtag ccattcacga gcatagcttt gtcgttcgcc
    15181 tggctggtag ttttgtggat caaacggcat ccgggtatgg aggcaggtaa gatgcgcttt
    15241 tacccttgcc tcgctttcat cacagttgag cgcttcatcg cccggtagat aatgactttg
    15301 cccgatgtag tcgatcagtt cctgcaccag taccgacggg aaacgttcac tgttatcctg
    15361 aatggaaagc ccgatataac tgatatagag tttttgctgc gcggaaatta acgcttccag
    15421 gaacaggtag cggtcgtcat cgcgacggct acggtcgcca cgcttcggtt tctggctcat
    15481 caggtcaaag cccaatggcg caagctgacg tggataaacg ccgtcgttca ttcccagcag
    15541 gcaaaccact ttgaacggaa ttgaacgcat tggcatcaga gtacaaatgt taaccggtcc
    15601 ggcgagaaaa cgctggctga tacgttcttg atccagacgc tgtgccagtt catcacgcaa
    15661 tagtgacagc ggcaccgcgt cgccatactg cgcacctaaa ccttcggcga taatcgcctg
    15721 ccattgttgt tcgatcagcg tcatcgccgc ttcggtttcc gcatccggca ggaagaaggc
    15781 gttgagcata tcgcgacaaa ccggcaacca ctcttctagc ggacgctcct gtgccagccc
    15841 gcgatgccag atgtttagct gcattagcag tgaagccaga tgccccacca gttctgcaat
    15901 taagccgctc gactcatcat aaggtagaac cgattgccac tcgccctgcg cgctctccat
    15961 cgcgtagccc agcaacatac gcgtcaggcc aaatcgccag gtgtgttgtc cggtggcggg
    16021 gagttccagc tcgcgaacgt tgtcgtcatc tatcccccaa cgaatgccgg attcgttgac
    16081 ccactggcgt aaataacgca gcccttcttc ggtgatgtca aaccgcgccg ccagcaccgg
    16141 cacatccagt aatgccagca cgtcttccga cacaaagcgg ctgtctggca acgataacag
    16201 gctgataaac gcttccagta ccggatgcga ctgccgcgcc cgacggtcgg aaatggcgta
    16261 aggcaggtaa cgatccgcag gtgcgctacc aaacacagcc tgaataaacg gactgtagct
    16321 gtcgatatca gccaccatca cgatgatgtc gcgcggagta agtgtcgggt cttcttccag
    16381 catcgccagc aggcgatcgt gcaaaacttc aacttcacgc tgcgggctat ggcaaacgtg
    16441 gaaggtgata ctgctatcca gtggatcaag cgggcgtttg ttatcgctac gggaaaactc
    16501 ttcgatgttc acaccagcaa cggcacggtt ttccagttcc agaatgtcag actgaatgtt
    16561 atgcagcagg ttatctggcg tgacatcgac aaaggcgtcc agctcctggc tgctctccag
    16621 gtcagaaagg agataaatgt agtcgcgccc aagcttcccc catgaggcca gcagcgggtt
    16681 gtcgacatcc tgttcaccat cgctgttaaa gagctgtccg gcattttcgc tatcgcgaaa
    16741 tagcggcaat tcgcgatctt caaaactgtg tcgacgctga cgagtcagca gtttcgccag
    16801 ataagcagga tctttaatat cgccccagta ataacggcag gggttggtaa acaggagatg
    16861 gatttcaata tgtttaccca gcgcctggag cgcctggaga taaacaggcg gtaacgcgga
    16921 aataccgcat ataaagacgc gcgaaggtaa ccccggcggg caggtcgtcg cggactccag
    16981 cgtttcgata aagcgctgat agagattcgc gcggtgccag cgcggttgtc cgagttcatg
    17041 ggtatattcc accagcgcct tccacaacgg cgcttgccag gcctgtgctt ctcccagccc
    17101 ttcaaccaaa tgtcctgttt cccattgtgc cagccactcc gggcgataga ccagatactg
    17161 gtcaaacagg tccgccgctt ttgaggaaag ctggaacagt tttcgcttgt cgctatcgtc
    17221 agtcagataa tgccgcaaca gggtaaagtc ttcgtgctcc aacagttgtg gcagcagagt
    17281 catcagtttc cagctcatgc tctgtttgtt aaaggcgctc tctttgggga tctccggtaa
    17341 cacccggacg aacatatccc agataaagct cgcaggcagc ggaaaatcaa tgtttgccgc
    17401 aataccaaac ttttgcgaca gggtcatttg cagccactgt gccataccgg tactttgcac
    17461 cagaatcatc tctggttcga aaggatcgtc cagccgttcg cgttcgacaa taaactccat
    17521 caacgcttcc agcacgtcca gacgattgga atggtagacc cttaacatag cggctcctga
    17581 ctactgacga ttcgggcaat gcaggcgggt catctcgcct tctctgcccc cgggtgaaac
    17641 tagcgtaacg ctgatgctga cacatcccgc ctgcgatgtc tgcaatcggt tgacctgcca
    17701 gttagctggt ggcgaaatcg cgcgcagttg cgtttgctgc cagccatgcc gccagagctg
    17761 ttggtactgg tttctgctgg caagactgtt cattaatgtt cgctggaaac ccgataacgc
    17821 agtgacaatc atcaccatca acaccatcgc caacattacc tccggcaggc taaagccttg
    17881 ttgattcttc agggaagctg acataacgcc ctctctttca gcggacaaaa atcgctccag
    17941 ccgcttggcg aaaaaacaat gtttccatca atgacttcgt ctgttcgcca caacgaaacg
    18001 ccttcataac cggcaatcaa taaggcttca ttatctgcca gtaaacgcaa acaaacctgg
    18061 gcatcggttt cagcgtactg cgagcactga actgctggct gcgtctgcca ggagtgcatt
    18121 tttccccacg ccagcgccga ctgaacgatg gcctggcggc gcaatgactg actttccatg
    18181 ctcacgcgag aggcaaaact gcgatcctgt tggctcattc cttgtaatag caaactaccc
    18241 aaaaccagca gcatcaggac cagagccagt gacgaaacac ccttttcgcg gttcacaggt
    18301 tgaatcctgt cacgctatag ctggcattca ccacggtttg cggttcagac ttactggcag
    18361 cacgcatatt aaccgtcaac accggcgaga agccgctgac atcctgacgt acgacctgaa
    18421 aagtgtcgat aatgatggca tccggattag tgactttatc ccagccctta ccttcacagg
    18481 atgtcgcacc gcgtagcgtt tccagcacat gctccttcag acgaaatcca atctggtcgg
    18541 actcttttac cggttcgcga tcccagatac cgttactgtt cgcatcccac tgcacaatga
    18601 tacagtcacc ctgtccgaca atttccagcc cttcgccggt acagatgcca tgacaataac
    18661 ccgccctctg gagatgcttc gcgacggtaa atacccgcag ccagatttca tcttccagcg
    18721 ccagcttacg ggtgctcgtt aaactttcac gctgtaacgc aggcagaaag cgtgcagccc
    18781 ccagcaacaa tacgctactg atcgccatag caatcaacac ttccagcaga gaaaaacctt
    18841 gctcttttac aggcatcctt ctgtttctcc ttgctgacaa agccggagtc ttccccacgg
    18901 cgaaaccacc agccaccact cgcccgttga gtttttgaag cgaatatgcc cggcccatgc
    18961 ggtattgcgc aggccaaaga aagcaagcga aggtgtcagg tcgctcattt cgacttcggg
    19021 ccagcgtggc acaaagacca atggtgaact gccatgacag gtattggccc cagcagcgga
    19081 actcacaagg caccataacg tcccctccct gataacgctg atactgtggt cgcggttatg
    19141 ccagttggca tcttcacgta aatagagcaa atagtcccgc gcctggctgg cggtttgcca
    19201 tagccgttgc gactgctgcc agtattgcca gccatagagt ccacttgcgc ttagcatgac
    19261 caaaatcagc atcgcgacca gcgtttcaat cagcgtataa ccacgttgtg ttttcatgcc
    19321 ggcagtatgg agcgaggaga aaaaaagacg agggccagtt tctatttctt cggcgcatct
    19381 tccggactat ttacgccgtt gcaggacgtt gcaaaatttc gggaaggtgt ctcgaagaat
    19441 ttaatggagg gtaaaaaaaa ccgacgcaca ctagcgtcgg ctctggcagg atgtttcgta
    19501 attagatagc caccggcgct ttaatgcccg gatgcggatc gtagccttca atctcaaaat
    19561 cttcgaaacg gtagtcgaag atggattcgg gtttacgttt gataatcaac ttcggcagcg
    19621 gacgcggttc gcggcttaat tgcagatgag tttgatccat atgattgctg tacaggtgcg
    19681 tgtcgccccc cgtccagaca aaatcgccca cttccagatc acactgctgc gccatcatat
    19741 gcaccagtaa cgcgtagctg gcaatgttaa acggcaggcc gaggaaaacg tcacaggagc
    19801 gctgataaag ctggcaagag agtttgccgt ctgccacata gaactggaag aacgcatggc
    19861 acggtgccag cgccatttta tccagttcgc ctacgttcca cgctgaaaca ataatgcggc
    19921 gcgaatccgg gtcgtttttc agctggttca gtaccgtagt gatctggtca atatgacgac
    19981 gatccggcgt tggccaggcg cgccactgtt taccatacac tggcccgagg tcgccgtttt
    20041 catcggccca ttcgtcccag atggtgacat tgttttcgtg tagataagca atgttagtgt
    20101 cgccctgcag aaaccacagc agttcatgga tgatggaacg caggtggcaa cgtttagttg
    20161 tcaccagcgg gaatccatcc tgcaggttaa aacgcatctg atgaccaaaa atggaaagcg
    20221 ttccggttcc ggtacggtcg tttttctgtg tgccttcgtc gagcactttt tgcatcagtt
    20281 ctaaatactg tttcatggtt cctcaggaaa cgtgttgctg tgggctgcga cgatatgccc
    20341 agaccatcat gatcacaccc gcgacaatca tcgggatgga aagaatttgt cccatgctga
    20401 tgtactgcac ccaggcacca gtaaactgcg cgtcgggctg gcggaaaaac tcaacaatga
    20461 tgcgaaacgc gccgtaacca atcaggaaca aacctgagac agctcccatt gggcgcggtt
    20521 tacgaatata caggttgagg ataataaaca gcactacacc ttccagcaac agctcgtaaa
    20581 gctgtgatgg gtggcgcggc agcacaccgt aagtatcgaa aatggattgc cactgcgggt
    20641 tggtttgcag cagcaaaata tcttctgtac gggagccagg gaacagcatg gcaaacggga
    20701 agttcgggtc aacgcggccc cacaattcac cgttaataaa gttgcccaga cgcccggcac
    20761 caagaccaaa cggaatgagt ggtgcgataa aatcagagac ctggaagaag gaacgtttag
    20821 tacggcgggc gaagataatc atcaccacga taacgccaat caggccgccg tggaaggaca
    20881 tgccgccgtc ccagacacgg aacagataca gcggatcggc cataaactgc gggaagttgt
    20941 agaacagaac ataaccaata cgtccaccga ggaagacgcc gaggaagccc gcatagagta
    21001 agttttcaac ttcatttttg gtccagccac tgcccggacg attcgcccga cgtgttgcca
    21061 gccacattgc aaaaatgaaa cccaccagat acatcaggcc gtaccagtga agcgccacgg
    21121 gtcctattga gaaaatgacc ggatcaaact ccggaaaatg cagatagcta ctggtcatct
    21181 gtcaccacaa gttcttgtta tttcgctgaa agagaacagc gattgaaatg cgcgccgcag
    21241 gtttcaggcg ctccaaaggt gcgaataata gcacaagggg acctggctgg ttgccggata
    21301 ccgttaaaag atatgtatat gatccgcgct ataaccctcc gcgaatcagc ccgcccatgc
    21361 cgcgacgctc cataaaggct gcaacctgat gacgaacttc ggtcgccagt tgcgcttcca
    21421 gactacgctg cgcaagattt tctgcttcgg caaaatcaat gcgccgcagc aggtatttta
    21481 cccgcgctac agaacgtccg ttcatagaca gatggcgata cccaagccca atgaggattg
    21541 ccacgcacat gggatcgccc gccatttcac cgcacaaacg gagatcgata ccatgtattt
    21601 ccgcttcccg ggcgatcatt gccagagctc gtaacattgc aggatgaagg ctgtcataaa
    21661 tgttcgccac ccgggtattg ttgcgatcaa cggccagaat gtattgagtc agatcgttgg
    21721 tgccaacaga gatgaaatcg acccgctttg ccagatgcgg cagcataaat accattgacg
    21781 gtacttccag catgatgccg atacgtggtt tgggaatttc gtaaccgatc atctcctcga
    21841 cttcacgtcc ggcacgttca atcaggcggc gtgcttcgtc aacttcatcg aggctggtga
    21901 ccatcggcaa cagaatattc aggttgcccg tagcggcatt agcacgcagc atcgcccgca
    21961 cctggatcaa gaagatctcc ggctgatcga gcgtaatgcg aatcccacgc caacccaggc
    22021 atggattctc ttcgctgatc ggcatgtaag gcagctgctt atctgctccg acatccagcg
    22081 tacgcaaggt gacgggttta tcattgaaca tttgcagcat cccctgatac tgcgccacct
    22141 gttcttcttc cgacgggaaa ccactttgca gcatgaatgg gatttcagtg cgataaagac
    22201 cgatgccatc aatacggctg cccagttttt cttcatgttc cgggcttaaa ccagcattga
    22261 gcatgacttt tatacgctca ccgcttttta actgcgcggg taaattgacg tcatcttccg
    22321 ccagacggct aagctcaatc tcttcactaa ttagccgctg atattcttgc agcagtaccg
    22381 gctccggatc gaccagcaat tcaccgcgat agccatcaac gatcagcgtc ctacgatgca
    22441 gcaccgaagg ctgaatatcc gcgcccatca cggtagggat ccccagcgca cgtaccatga
    22501 tcgcagcatg ggagttggct gcgccatctc gcacgacaac accgactaag cgatcctggg
    22561 gcagctcagc aagagttgtc gctgacagtt catctgccac cagaatgaaa cgttccggcc
    22621 aggcgttcgg cccttgatta gcgtcatcaa gatgaaacag caatcgctga cccagcgcac
    22681 gtaaatcgcc agcccgctct ttgagatagt tatcgcttag cgcggcaaac tgttcggcaa
    22741 atttttcaat gaccgttttt accgcccact ctgccaccga gcctttatca acctcggcaa
    22801 acaattcgcg acgcagccgg gtgtccgaaa gcaggtgcga gtaaagatcg aaaatagccg
    22861 ccgtttcttt ttgtgctccg gcggcaaagc gtttgctgta gcggcgaaac tcgtttgccg
    22921 cttcttccag cgccccggtc aatcgttcgc gttccagagc cggatccagc gttgatgcct
    22981 gatacacctg ttccattaaa ggtaacgtgg catcctgcca gccttcggca atcgccacac
    23041 caggtgctgc cggtaatgcg cggattcgcg tctggcgata ttgcccaaac aaggcagtca
    23101 actgcgactg agaaagaata gctgccatct gggtggcaag cgtcaccagg aaggattctt
    23161 cactttcgtc atactggcgc aactctcgtt gctgtaccac cagtacacca agcaactggc
    23221 gacgttgaat aattggtacg cctaaaaacg cgcggaaacg ttcttctttt acggagggga
    23281 tgtatttgaa gctggggtgc ttttgcgcat ctgcaaggtt tatcggttcc gccagcctgc
    23341 caaccaggcc gacgatccct tcatcaaacg cgagcgttac agtgcgaccg cgtggttttt
    23401 tcagcccccg ggtcgccatc aggtagtaac aacgtcgatc atgatcggcc aggtagaccg
    23461 aacagacctc ggtatccatc gcaagacaga tgtcggtaac cagaatattt aacgcctcat
    23521 tcaggcgtgg tgcgctggct accttttcga ctatttcgcg caggcgagtg agcataattg
    23581 gcgtgactta acctctttta cgtcgataag cagatgtgtt ttgtggtttt ggcgtatttt
    23641 cctgcagtga catcaccaca ctcgcgaact ctttcattac cctacggtag acatcacgtt
    23701 taaatgacac cacctgtctg accggatacc agtaacttac ccatcgccag ccgtcaaact
    23761 ctggtgtact gctggtttgc atattgattt ctgcatcgcc gctcaccagc tgcaagagaa
    23821 accatttttg tttttggccg atacaaaccg gcttcgtgtc ccaacgcacc aaacgtttcg
    23881 gtaatttgta gcgcaaccag ttacgcgttg aagcaaggat tcgaacgtct ttgcggctta
    23941 atcctacttc ttcaaacaat tcacggtaca tcgcctgctc tgcggattct ccggggttga
    24001 ttccgccttg cggaaattgc caggagtgct gaccaaatcg ccgggcccac attacctgcc
    24061 cctggcgatt acaaatcacg atacctacgt ttgggcggta gccatcgtca tcaatcaccg
    24121 gactacctca aaataaagct ttatatacga atgattgttt catactccag gaagacggta
    24181 aaccactctc tgcagggcat tacacactaa taacaattga ataactcaca gttatgtgca
    24241 gagttataaa cagaggaagg ggtggatagc cgtttttatt caccttttct gtggatagag
    24301 ttgtgaagaa ctacggaatt actacgggaa aacccggagc attctgaata agcccgatat
    24361 aggcatttta aaatattcat tatcagtcaa tgcattacat gtaatttgag taatgaaaaa
    24421 gagtaattcg tgacccaggt cacacctctc atttacgggt tggcgaaaga tcaaccaatg
    24481 ccgtatttat ccacagaatg tgccactaag ttaagcactg aaccactaaa aactggagtt
    24541 tcgtcgcacg tcaaggctgt aaatggaaac agtagtggag gtttttcaca gttatcccag
    24601 ctttctgtgg ataacatggt gtaagatcct gtttattttc agtgaccaga tttggaaaac
    24661 ctattgcagt gctgcgcaac tcgattatcg gcagcctaaa aagcaatata aatcagagaa
    24721 ttgaacaaca catgtggaaa aagttacact gcgaatattc ggcacataat tgctgtttgt
    24781 tttttaacca aggtatcatg acatgtccca acctcgccca ctgctctctc ctcccgaaac
    24841 tgaagaacag ttgttagcgc aagcacagca actttctggt tatacattgg gagaactggc
    24901 ggcacttgcc gggctggtta cgccagagaa tttaaaacgc gataagggct ggattggcgt
    24961 gttactggag atctggctag gtgccagcgc agggagtaaa cctgagcaag attttgctgc
    25021 tctgggcgtg gaacttaaaa ctatccctgt ggatagtctt ggtcgtccgc tggaaacaac
    25081 attcgtttgt gttgccccgt taacgggtaa tagcggggtg acctgggaaa ccagccacgt
    25141 gcgccacaag ctcaaacgcg tactgtggat accggttgaa ggcgagcgca gcatcccgct
    25201 ggcgcagcgt cgcgtaggat ccccgttgct gtggaccccg aatgaagagg aagaccgaca
    25261 gctacgcgaa gactgggaag aattaatgga tatgattgtt ctcggtcagg ttgagcggat
    25321 caccgctcgt cacggggaat atttacagat aagaccgaaa gcagcgaatg cgaaagcgct
    25381 taccgaagcc attggtgccc ggggcgaacg gattctgacg ctgccacgcg gcttttattt
    25441 gaagaagaat ttcaccagtg cactactggc ccgtcatttt ctgatccagt agccatcgct
    25501 ttgacctgcc gctttccggg catataatta ccgcttcatt tttttggcag ggctttttag
    25561 atgttatttg catggataac cgatcctaac gcctggcttg cgctcggtac gctgacgctg
    25621 ctggagatcg ttcttgggat cgacaatatt attttccttt ctctggtggt ggcaaagctt
    25681 cccacagcac aacgtgctca tgcgcgccgt ctggggttgg cgggagccat ggttatgcgt
    25741 ctggcgctgc tggcatcaat cgcctgggtt acgcgcctga caaatccgct ttttacaata
    25801 ttcagtcagg aaatttctgc ccgtgatttg attctgcttc tgggtggctt gttccttatc
    25861 tggaaagcca gcaaggaaat ccacgaatcc attgaaggtg aagaagaagg gctgaaaaca
    25921 cgcgtttcat cattcctcgg cgctatcgtg cagattatgc tgctggatat tatctttagc
    25981 ctcgactcgg tgattacggc tgtgggtctg tcagatcacc tgtttattat gatggcagcc
    26041 gtggtgattg ccgtaggcgt gatgatgttc gccgcgcgct cgattggtga ttttgtcgaa
    26101 cgccatcctt cggtaaaaat gctggcgctc tctttcctga ttctggtggg ctttaccctg
    26161 attctggaaa gtttcgacat ccacgtaccg aaaggttaca tctacttcgc gatgttcttc
    26221 tctattgcgg ttgaaagcct caacttgatt cgcaacaaaa agaatccgct ctgatactcc
    26281 gtacgctctc ctgcgggagg gcgtactcac tccttttacc ctcacagttt aagattttcc
    26341 tgctttcaag atatataacg tcggtttata aacagactat tatcataggt aggccaaatg
    26401 aggataaccg gatgaaaaaa tgggcagtaa taatttctgc agtcggactg gcgtttgctg
    26461 tttccgggtg ttccagtgat tacgtcatgg cgaccaaaga tggccgtatg attttgaccg
    26521 atggaaaacc tgaaattgat gatgataccg ggctggtgag ttatcacgat cagcaaggta
    26581 acgcgatgca aattaaccgt gatgatgttt cgcaaattat tgaacgttaa caaataaggt
    26641 cagcatccgg ctggccttaa gatttttctc tttccctttt cccttccctc tgccattttt
    26701 atattcctta tgtcgtgatt ataaaaagga aacggctatg caatatcacc gtatacccca
    26761 cagttcgctg gaagtcagca cgctggggct tggcacgatg acgtttggtg aacagaacag
    26821 cgaagccgac gcccacgcac aactcgacta tgccgtcgct cagggcatta accttatcga
    26881 cgttgccgaa atgtacccag tacctccgcg ccccgaaacg caagggttaa ccgaaaccta
    26941 cgtcggcaac tggctggcga aacatggcag ccgcgaaaag ttaattatcg cctccaaagt
    27001 gagcggaccg tcgcgcaata atgacaaggg catccgcccg gatcaggcgc tggatcggaa
    27061 gaatatccgc gaagcgctgc atgacagcct caagcgccta cagactgatt acctcgatct
    27121 ttatcaggtg cactggccgc agcgcccgac caactgcttc ggcaaactcg gttatagctg
    27181 gacggattct gcgcctgcgg tttcgctgct ggatacgctg gacgcactgg cagagtacca
    27241 acgcgcggga aaaattcgtt atatcggcgt gtcgaacgaa actgcatttg gcgtaatgcg
    27301 ctacctgcat ctggcggaca aacacgatct gccgagtatt gtcaccattc agaaccctta
    27361 cagtctgtta aaccgcagtt ttgaagtagg tctggcagaa gtcagccagt atgaaggggg
    27421 cgaactgctg gcctattcat gcctgggttt cggcacgctg accgggaaat atctcaatgg
    27481 tgcaaaaccc gctggcgcac gtaatacgct ctttagtcgg ttcacccgct atagcggtga
    27541 gcaaacgcaa aaagccgtcg cggcgtatgt tgatatcgcc agacgtcatg gcctggaccc
    27601 tgctcagatg gcgctcgcgt ttgtacgccg tcaaccgttt gttgccagca ctctgctggg
    27661 cgcaaccacg atggatcagc tgaaaactaa catcgaaagt ttgcatctgg agttaagcga
    27721 agacgtatta gctgaaattg aagcggtgca tcaggtttat acttatccgg caccataaga
    27781 ttaacgccgg ttaaaaccgg cgttaaatat taatgacggc gctgccagat ccacagcgcc
    27841 gttattgcca gcgcaaacag cgcaccgaag ccaatgccaa tgggcacgac cgggatgcct
    27901 accattaccg ccagcgagta aatgcccagc atcaacaaca tggcgctgtt ttcgccaagg
    27961 ttttgtactg caatcgcatt ccccgccccg acgctttttt taccccgctc ctgtagcaac
    28021 gcattgagcg gaacgacaaa aaagcccccc atcacgccaa tcagcatcaa caaggcatag
    28081 gctggcagca gctcgtgttg cagggaaaaa atcagtacca ccacgccaat caaaatcccg
    28141 gctggcatac agcgtgacac ggtttccagc gtaactaact tcgctgccgc acctgcgcca
    28201 accacgatac caatcgctac catcgcgttg agataggtgg gcgtagcgtt atcggtaatg
    28261 cccagcgcca ccggtaccca cagcaccaac aggaaacgca gcgtgacacc cgctccccag
    28321 aataaactgg tgcccaccag cgaaaaacgc gtttcaccat tgcgccatag cgaggtgcag
    28381 gcattcagga aactgcgggt catgttgatg agattccagg actgccccgg acgcgccgcc
    28441 gccagtttgg gaatgtagat attggcaacg accgcaccac cgtaggccag tgcgcatgcg
    28501 gccagggcga cgaggacatg ccagtcagcc agcacaccac cggctacgga accgagcaaa
    28561 atcgccgcta tggtagaagc ttccattaaa ccgttagctt tcactaactt actacccgtg
    28621 gttaattcgc cgagaatacc gtatttcgcc ggtgaatagg ctgcagcacc aacccccacc
    28681 agcgtatagc cgagaaacgg attgatacca aagcagatac tggctgcgcc cagcagcttc
    28741 aggccgttgg caaacatcat cacccggcct ttggcgaagc tatccgccac ctgcccgaca
    28801 aacggcgcaa aaagaatgta agcacctaca aacaccattt gcaggatggg ctggctccac
    28861 tccggataga actgcgcttt cagtaacgcc agagtggcaa acagtagggc attatcgcca
    28921 aacgcagaga gaaactgcgc cacgataacc gctttcatcc ccttcgacca caacgaagtg
    28981 ttagtgtgca ctgactcact catcgtgttg ttccgcttcg tctatccagc ttttcaacgt
    29041 gacaaagtca ggtttgccgc tgccaagtaa tggcatctgt ttcagatagc gaatatcgcg
    29101 cggtacagca agctccggca cgccgtgctc gcgggcatac tgttgcaact tatcgcgcgt
    29161 cagttcgtta tctgtggtga acagcaccag tgcctcgcct ttgctggcat cgctcttaat
    29221 cgcagtggca tggactttat ctggcgaaac accaagtgcc agttgttcca ccatttccag
    29281 cgacaccatt tcgcctgcaa ttttggcaaa gcgttttgcg cggccctgaa tctgcacaaa
    29341 gccctgctcg tcaaaacgca caatatcgcc agtgtcatac cagccgcgct ccatttcgcc
    29401 gcgaacattc tcggcggtgg gcacttccag tacacctggc ttctccaccc gcagatagcc
    29461 gttcattatg ttcggccctt tcagttgcag gcgtccgccc tcttcgatac caggaaccga
    29521 caacaggcgc gcatccattc ctggtagaat acgccctacc gtaccgggtt tcgccgccat
    29581 cggtacgttg atagaaacga caggcgcgca ctcggttaca ccatagcctt caaggatgcg
    29641 caggccaaat ttatcctgcc aaagctgttt ggtactttct tgtagttttt ctgcgcctgc
    29701 caccacatag cgtagacgat agaagtcata cgggttggcg aaacgcgcgt agtgaccgag
    29761 gaaagtcgag gtaccgaaca acacggtgca actgcggtca tacaccaact ccggcacaat
    29821 gcggtaatgc agcgggcttg gataaaggaa cacttctgca cctgtaagca gtggcgtaaa
    29881 caggcctacc gtcagcccaa aggagtgaaa cagcggtaat gccgacataa agcgatcgtt
    29941 ggtggtgaag tcggcaatcg ttttaatctg ctcgacgttc gccagaatgc ttttatggct
    30001 atggacgacg ccttttggat ggccttcaga accggaggta aagaggatca gcgcctcttc
    30061 ttccggctgc tgttttacct gcgccaggcg cggcatcagc aaatgagcga agatccatac
    30121 tttgtcggca gtggtgacat ctgcttttaa atcttccaga tagacccagc gcacctgagt
    30181 aagttgctcc ggcagatgcc agagtttgcc tttatcgaga aactggcggg aagtgaagat
    30241 ggttttgatt tcagccgccg taatagcact ggtcagccct tttaccccag cagtgtagtt
    30301 catcattgcg ggaatgcggc gacacgcgat ggccccaaaa atcactgccg cactgatgcc
    30361 tgcattgggc agcattaagc cgatgcgttc gccttcaaca ctgtattttt caaggatgcg
    30421 tccaacaaac agcgttttcg taagcaattt gcgataggag tctggggtaa agttgacgtc
    30481 ttcgacacat ttcttcccgg ctccgaagcg gtacattgca ctcagtaaag attcgtacag
    30541 agtttcacgc gggcgcaccg ccatacgcgc ttccatcatt atttgatgca gcatttcgcc
    30601 agcgattttg cgacggtcac gggcacgcga cgcatccggc atcgccacct gcgttggagg
    30661 caaaatatgc agagtaattt gcgggaacaa gcgacgttta accagacctt tcaggcggct
    30721 gaagtgcgta agttccgccc cttcaatacg cacaggaata accgttgcac cagacttcgc
    30781 cgcgacaaaa cccgcgccat cgtagatttt catcagcgag cctgtagtgg tgatgcgtcc
    30841 ttcagggaaa atcaccactg gtcggccctg ttccaccaga cgtaccagat gtttaatagc
    30901 cataggttgc gtcgggtcga gaggaacaaa gtcgataaat gatttcagcc aacgcatata
    30961 ccactgttgg cttattgagg tgtaaacggc aaacactgga cgcacaggta aaaacagtcc
    31021 aagcaaaatg ccatcaataa aagagacgtg attaggcgta attagaacgc gctcgccctt
    31081 cagtgcctgg gtgtcacccg taacgcgaac gcgatacaaa acacggcaca aatttcgaaa
    31141 aaagctaaaa agcattccaa ctccctttgc tctgattcag taaaagcgaa tggagggaga
    31201 ttacacgaga taaagaacgc gagcgacagt aaattaggtg cgaaaaaaaa cctgcgcatc
    31261 cgcgcaggtt ggtgcaagag acagggtacg aagagcgtac cgaataatct caccaatcaa
    31321 tacctctggg atcaccactt tagcaacctg aagccaaacg ccaccagcgg tcaatcgcaa
    31381 cagcgtttcg caaagtgtaa ccaaaggttt gcaatctctt tttttgtctt acttatttgc
    31441 gtttggctca cattcccacg atgaaaacac gccacccctt gaaccaacgg gcgttttccg
    31501 taacactgaa agaatgtaag cgtttaccca ctaaggtatt ttcatggcga ccataaagga
    31561 tgtagcccga ctggcaggcg tttcagtcgc caccgtttcc cgcgtcatta ataattcacc
    31621 caaagccagc gaagcttccc ggctggctgt gcatagtgca atggagtctc ttagctatca
    31681 cccgaacgcc aacgcccgtg cgctggcgca gcagaccact gaaacggtcg gtctgatcgt
    31741 tggtgatgtt tccgatccgt ttttcggtgc aatggtgaaa gcggtcgaac aggtggctta
    31801 tcacaccggt aatttcttat tgattggcaa cggttaccac aacgaacaaa aagagcgtca
    31861 ggctattgag caactgatcc gccatcgctg tgctgcgttg gtcgtccatg ccaaaatgat
    31921 cccggatgcc gatttagcct cattaatgaa acaaatgccc ggtatggtgc tgatcaaccg
    31981 tatcctgcct ggctttgaaa accgttgtat tgctcttgac gatcgttacg gtgcctggct
    32041 ggcaacgcgt catttaattc agcaaggtca tacccgcatt ggttatctgt gctctaacca
    32101 ctctatttct gacgccgaag atcgtctgca agggtattac gatgcccttg ctgaaagtgg
    32161 tattgcggcc aatgaccggc tggtgacatt tggcgaacca gacgaaagcg gcggcgaaca
    32221 ggcaatgacc gagcttttgg gacgaggaag aaatttcact gcggtagcct gttataacga
    32281 ttcaatggcg gcgggtgcga tgggcgttct caatgataat ggtattgatg taccgggtga
    32341 gatttcgtta attggctttg atgatgtgct ggtgtcacgc tatgtgcgtc cgcgcctgac
    32401 caccgtgcgt tacccaatcg tgacgatggc gacccaggct gccgaactgg ctttggcgct
    32461 ggcggataat cgccctctcc cggaaatcac taatgtcttt agtccgacgc tggtacgtcg
    32521 tcattcagtg tcaactccgt cgctggaggc aagtcatcat gcaaccagcg actaaccgca
    32581 gttaaagcaa ttccagagcc agtaattctt cgatggtctg gcgacggcga atcaaccgcg
    32641 cctgaccatt atcaaacaga acttctggta acagcgaacg gctattgtag ttggatgaca
    32701 ttgatgcgcc atatgcccct gtatcatgca gtaccagata atcacctgcc ttcacttccg
    32761 gcaaggcgcg ggtttcaaca tttccccctt cctgctgggt aaagacatcg cccgattcac
    32821 ataacggtcc ggcgacgacg gtttccaccg ttggcgcgtg ttccagagaa cgaccatcag
    32881 ctgccagggc actgatatgg tggtaactac cgtacattgc cgggcgcatc agatcgttga
    32941 acccggcatc aaccagcaca aagtggcggc tccccatttg tttgacgctc cgcacctgag
    33001 taattaatac gccagactgc gctaccagga agcgacccgg ttcaatttcc agtttcacag
    33061 ggtggcccaa atggcgggcg atttgctcac gcgcggcatt ccacagacca taataatgtt
    33121 cggtatcaac cgcctcttca ccctgttgat aaggaacaga aagcccaccg cccgcagaaa
    33181 tagcctgtaa atcctgaccg aattcgatga cctgacgcac catagcacca cacacctgtt
    33241 ccagatgggc ataatcaacg ccagaaccaa tgtgcatgtg aatgccgacc agctgcagat
    33301 gatgacgttg tatcacgtcc agtgcggcgg gcagatcggt gtaccagata ccgtgcttgc
    33361 tgttttcgcc accggtattg gttttttggc tatgtccgtg accaaacccc ggattaacgc
    33421 gcagccatac ccgatgccct ggcgaaacct ggcccagttg gtcgagcata tcaacagaac
    33481 ccgcattcac cggaatttgc aattcactga cgcgttcaag cgtcgcctga tcgataacat
    33541 ctgccgtaaa aacaatatca tcggggtgcg tttgcggatt gtaacccgcc gccaacgcac
    33601 gctctatttc gcctaacgag acggaatcca ctttcacgcc ctgctcacgc attaagcgca
    33661 aaatatgaat attggaacag gctttctgtg caaagcgcac cacatcaaac tgtttcagcg
    33721 ctgcaatctg ccgacgaata atttgcgcat cgtagaccca caccgggcag ccaaattcag
    33781 cgggcaaacg cagcagattt tcggcggtga gatcggtatc ggtgctgaac agtgaatgtg
    33841 gcataacaaa ctccagataa gtgctttttt atgattacgc cacatcataa aaagaataaa
    33901 aaatatcgat ttatgtcgag tctatgcaaa aatgatatgg attaccggat tgcgagagag
    33961 cgctaatggc cgccgttaac ttacgtcata ttgaaatttt tcatgcggta atgaccgccg
    34021 gaagcctgac tgaggcggca cacctgctac acacctcaca gccaaccgtc agccgcgaac
    34081 ttgcgcgctt tgagaaggtg atcgggctga aattgtttga gcgcgtacgt gggcgattac
    34141 atcctaccgt gcaaggactg cgtctgtttg aagaagtgca acgatcctgg tacggactgg
    34201 atcgaattgt cagcgctgca gaaagtctgc gcgagtttcg ccagggagaa ctgtctattg
    34261 cctgcctgcc ggtcttttcg caatcttttt taccgcagct cctgcaaccc tttctggcac
    34321 gttatcccga tgtcagctta aatatcgtgc cccaggaatc accgctactt gaagagtggc
    34381 tctcggccca gcgtcatgat ttaggactca ctgagacact ccatacgcct gcgggaacag
    34441 aacgtaccga attactctct ttagatgaag tgtgtgtgtt acctccgggt catccgctgg
    34501 cggtaaaaaa ggtattaacg ccggatgatt ttcagggtga gaactacatc agcctttccc
    34561 gtactgacag ctatcgccag ttgctggatc agctatttac tgaacatcag gttaaacgac
    34621 gcatgatcgt agaaacccac agcgccgcgt caatctgcgc aatggtacgg gcgggggtag
    34681 gtgtttcggt ggttaacccg ctcaccgcac tgaattatgc ggcaagcggt ttagtggtgc
    34741 ggcggttcag tattgcggtt ccgttcaccg tcagcctgat ccgccccctg caccgcccgt
    34801 catcagcgct ggtgcaggcg tttagtgagc atttacaagc ggggttaccg aaactggtca
    34861 cttctcttga cgctattttg tcgtcagcta cgacagcata aaagcgacag catcctcggc
    34921 atggatcgcc gcagtatcaa acacaggcaa aacactgcgc tcttctggca ccagtaaacc
    34981 aatttctgtg cagccaaaaa tgacgccctg tgcgccctgt tctgcaaggc gagcaatcac
    35041 ttgcgcataa taagcgcgtg acgcttcggt aaattgcccc agacacagtt cttcaaaaat
    35101 aatctgatta attttcgccc gttcatccgc ttcaggaata agacaattga tggaaaattg
    35161 ttccgtcagc cgcccgcgat aaaaatcctg ttccatggtg taacgcgtac ccagcagcgc
    35221 cacacgagtc attccggccc cggtaattgc acgtccggtg gcatccgcaa tgtgtaagaa
    35281 aggcagagtg caacgtgact caatggcatc cgccacttta tgcatcgtat tggtacataa
    35341 cacaatacct tctgcgcccg cccgctgtaa gccaagcgcc gcctcagcca gaatgtcccc
    35401 ggttttatcc cattccccgc gacgctggca ctcttctatt tcatgaaaat cgacgctatg
    35461 tagcagcact tgcgcagagt gaagcccacc aagccgctgt ttaatgcctt catttatcaa
    35521 acgatagtaa ggaatggtgg attcccagct cattcctccc agcaaaccaa ttgttttcat
    35581 tcctctctcc tgatgtgtgt taccgcaaca aggctgaata aggaacgaga caaacgcctc
    35641 aacggccaag tgcccaatct ctattaacga aaaaagggcc ggatgtacag cacatccggc
    35701 ccgtgaaatc agatgccgat atttctcaac ttctcgcctg ccatcagttt gcgttcgata
    35761 tgttccagcg tgacattttt ggtttccgga atgagccaga aagtgatgcc cacaaacgca
    35821 atgttcagcg cagtgtagag ccagaacgta ccggcagcgc caatgctgtc gagcagcgtc
    35881 aggaaggtcg cgccgataat catattcgac acccagttcg tggtggtcga acaggtaata
    35941 ccgaaatcgc ggcatttcag cggctgaatt tcagagcaca ggatccacac cactggcgcg
    36001 gcgctcatcg cataaccggc aatacacatc atcgtcatgc caacagagag ccaggacaag
    36061 ccactggaag ccgtaccgtt atcaaactgc atcaggcaat agcccagcac cagagtgcct
    36121 aacgccatca cgctgaaacc aattttcaga gccggtttac gccctgcttt atctaccgta
    36181 aacaccgcaa taaaggtggc gaacataaag gtcagcccta cgaccagagt cgcaatcatc
    36241 tgttgttctg tggtcgtaaa gcccgccatt ttgaagatac gcggcgcgta gtacatgatg
    36301 atgttcatac cggtaaactg ctgcatcgcc tgcaacaaca taccgagaaa cacagcacga
    36361 cggacgttac ggttgatctt aaacagtgcc caaccgccct gttttaactt caggctttca
    36421 cgaatttcgt tgagttcttc tcgcgctttt tccgacgtat cgcgcagcat acgcaatact
    36481 tcttccgcct caatatgacg ccccttttcc gccaaccagc gcgggctatt tggcaggaag
    36541 accaccagaa taatcagcag aactgctggt aaagcaagaa cccccaacat tgcgcgccag
    36601 ttaccgctat aactgaacgc tgtatcggat aaaaacgcca gcacgatgcc gagtgtgacc
    36661 atcaactggt acatactgat catcttaccg cgaacgtttt cacttgccat ttcagaaaga
    36721 tacagaggag cggtgtaaga cgcgatcccg acagcaatgc ccagcaccac acgagcggcg
    36781 attaacatct ctacgctggt cgcaaaagcg gaccctatag aaccgagtac aaacaggatg
    36841 gcccccgcca tcaggctgta tttacgcccc aggcggaacg acagccaacc attaaacagc
    36901 gcaccaattg ctgcgccgag catcatgcta ctaaccaccc attcctgcaa atgactggtc
    36961 agcacaaagt gatcggtaat gaacggcaac gctccggcga ttacgccgat atcaagacca
    37021 aataacaatc ctgcgaccgc agcagctacc gaaacaaaca tattcatacg ccgcgtatcc
    37081 cgcaaagaac gtggcgttaa agcagattcc gtattgatag taaccatttt ttcctgccag
    37141 cagagagtaa gacatagtga aaaaatacgt gaacaactca cgcaggtgtc aggtcggaaa
    37201 cagcataaat atggattaaa ttgctgcgac atgtcgttat gtgatggata ttccaatttt
    37261 caaattaagt tgaattattg agattattat taaccaccta attttacagc agataaaatt
    37321 cataaagttc attaattgat aattaatatg gattatttca taaccatgat atggattatg
    37381 atgatctaca ggtataaaaa accctgccat gcggcagggt cataaaagta agaagaatga
    37441 attaacgcgc cagccaaccg ccatccacgg caatggtata accattcaca taatctgaag
    37501 cgctggaggc aaggaacact atcggcccca tcaggtcact cggcagtccc caacgaccag
    37561 ctggaatgcg gtcgagaatt tccgcgctac gttgttcatc tgcccgtagt tgttgagtat
    37621 tgttggtcgc catgtaaccc ggagctatcg cattaacatt aatgttgtgt ttagcccatt
    37681 cgttcgccat caatcgcgtc acacccatca cgccgctttt tgatgcggta taagaaggca
    37741 cacggatccc gccctggaag gagagcattg acgcgatatt gataatcttg ccgccattgc
    37801 cttgcgcgat aaagtgtttc gccgctgcct gagacatgaa gaatacgctc ttgatattca
    37861 ggttcatgac atcgtcccag tctttttcgc tgaactcgag agcgtcttcg cggcgaatca
    37921 atccggcgtt attcaccagg atatcaatat gaccaaattc agctaccgcg cgatccagca
    37981 gtccaggaat gccatcaatc tttcgcagat cggcggtcag gcttaaaaaa cgacgcccca
    38041 gcgccgtgac ctgctcgatg gtttcagtcg gttcaacgat gttaatgcca acaatgtcac
    38101 agcccgcttg cgccagcccc aacgccatcc cctggcccag cccagtatca caaccagtga
    38161 c
//
LOCUS       DADMHM010000013        37969 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.013, whole genome shotgun sequence.
ACCESSION   DADMHM010000013 DADMHM010000000
VERSION     DADMHM010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 37969)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37969)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37969
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.013"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..311
                     /locus_tag="JN125_000594"
     CDS             <1..311
                     /locus_tag="JN125_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycine zipper 2TM domain-containing protein"
                     /protein_id="HAY8870468.1"
                     /translation="AFGALIGAVAGGVIGHNVGSGSNSGTTAGAVGGGAVAAAAGSMV
                     NDKTLVEGVSLTYKEGTKVYTSTQVGKECQFTTGLAVVITTTYNETRIQPNTKCPEKS
                     "
     gene            327..866
                     /locus_tag="JN125_000595"
     CDS             327..866
                     /locus_tag="JN125_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870469.1"
                     /translation="MKKVFLCAILASLSYPAIASSLQDQLSAVAEAEQQGKNEEQRQH
                     DEWVAERNREIQQEKQRRANAQVAANKRAATAAANKKARQDKLDAEASADKKRDQSYE
                     DELRSLEIQKQKLALAKEEARVKRENEFIDQELKHKAAQTDLVQSEADANRNMTEGGR
                     DLMKSVGKAEENKSDSWFN"
     gene            complement(961..2538)
                     /gene="guaA"
                     /locus_tag="JN125_000596"
     CDS             complement(961..2538)
                     /gene="guaA"
                     /locus_tag="JN125_000596"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HAY8870470.1"
                     /translation="MTENIHKHRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEA
                     QIRDFNPSGIILSGGPESTTEENSPRAPQYVFEAGVPVFGVCYGMQTMAMQLGGHVEA
                     SNEREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFVTVAST
                     ESCPFAIMANEEKRFYGVQFHPEVTHTRQGMHMLERFVRDICQCEALWTPAKIIDDAV
                     ARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDM
                     FGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQ
                     GTIYPDVIESAASATGKAHVIKSHHNVGGLPKEMKMGLVEPLKELFKDEVRKIGLELG
                     LPYDMLYRHPFPGPGLGVRVLGEVKKEYCDLLRRADAIFIEELRKADLYNKVSQAFTV
                     FLPVRSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGIS
                     RVVYDISGKPPATIEWE"
     gene            complement(2607..4073)
                     /gene="guaB"
                     /locus_tag="JN125_000597"
     CDS             complement(2607..4073)
                     /gene="guaB"
                     /locus_tag="JN125_000597"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004159092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HAY8870471.1"
                     /translation="MLRIAKEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPM
                     LSAAMDTVTEARLAIALAQEGGIGFIHKNMSIERQAEEVRRVKKHESGVVTDPQTVLP
                     TTTLREVKELTERNGFAGYPVVTEENELVGIITGRDVRFVTDLNQPVSVYMTPKERLV
                     TVREGEAREVVLAKMHEKRVEKALVVDDEFHLIGMITVKDFQKAERKPNACKDEQGRL
                     RVGAAVGAGAGNEERVDALVAAGVDVLLIDSSHGHSEGVLQRIRETRAKYPDLQIIGG
                     NVATAAGARALAEAGCSAVKVGIGPGSICTTRIVTGVGVPQITAVADAVEALEGTGIP
                     VIADGGIRFSGDIAKAIAAGASAVMVGSMLAGTEESPGEIELYQGRSYKSYRGMGSLG
                     AMSKGSSDRYFQSDNAADKLVPEGIEGRVAYKGRLKEIIHQQMGGLRSCMGLTGCGTI
                     DELRTKAEFVRISGAGIQESHVHDVTITKESPNYRLGS"
     gene            4235..5605
                     /gene="xseA"
                     /locus_tag="JN125_000598"
     CDS             4235..5605
                     /gene="xseA"
                     /locus_tag="JN125_000598"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HAY8870472.1"
                     /translation="MLPSQSPAIFTVSRLNQTVRLLLEHEMGQVWISGEISNFTQPAS
                     GHWYFTLKDDTAQVRCAMFRNSNRRVTFRPQHGQQVLVRANITLYEPRGDYQIIVESM
                     QPAGEGLLQQKYEQLKAKLQAEGLFDQQYKKPLPSPAHCVGVITSKTGAALHDILHVL
                     KRRDPSLPVIIYPTAVQGDDAPGQIVRAIELANQRNECDVLIVGRGGGSLEDLWSFND
                     ERVARAIFASRIPVVSAVGHETDVTIADFVADLRAPTPSAAAEVVSRNQQELLRQVQS
                     TRQRLEMAMDYYLANRTRRFTQIHHRLQQQHPQLRLARQQTMLERLQKRMSFALENQL
                     KRTGQQQQRLTQRLNQQNPQPKIHRAQTRIQQLEYRLAETLRVQLSATRERFGNAVTH
                     LEAVSPLSTLARGYSVTTATDGNVLKKVKQVKAGEMLTTRLEDGWIESEVKNIQPVKK
                     SRKKVH"
     gene            complement(5602..5817)
                     /locus_tag="JN125_000599"
     CDS             complement(5602..5817)
                     /locus_tag="JN125_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417005.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870473.1"
                     /translation="MELHCPQCQHVLDQDNGHARCPSCGEIIEMKALCPDCHQPLQVL
                     KACGAVDYFCQHGHGLISKKRVEFVLA"
     gene            complement(5886..7358)
                     /gene="der"
                     /locus_tag="JN125_000600"
     CDS             complement(5886..7358)
                     /gene="der"
                     /locus_tag="JN125_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417006.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HAY8870474.1"
                     /translation="MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGR
                     AEIEGREFICIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAI
                     AKHLRSREKPTFLVANKIDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLL
                     PWMEDLAPQEEVDEDAEYWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTL
                     TNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVI
                     KTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVKEQV
                     KETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAV
                     EDHQPPLVRGRRVKLKYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMG
                     SPIRIQFKEGENPYANKRNTLTPTQMRKRKRLMKHIKKNK"
     gene            complement(7476..8654)
                     /gene="bamB"
                     /locus_tag="JN125_000601"
     CDS             complement(7476..8654)
                     /gene="bamB"
                     /locus_tag="JN125_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamB"
                     /protein_id="HAY8870475.1"
                     /translation="MQLRKLLLPGLLSVTLLSGCSLFNSEEDVVKMSPLPTVENQFTP
                     TTAWSTSVGSGIGNFYSNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDG
                     WFSKEPALLSGGVTVFGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDG
                     LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPATAFGAAVVGGDNGRVSA
                     VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ
                     IMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYD
                     GNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSITR
                     "
     gene            complement(8665..9285)
                     /locus_tag="JN125_000602"
     CDS             complement(8665..9285)
                     /locus_tag="JN125_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfgM family protein"
                     /protein_id="HAY8870476.1"
                     /translation="MEIYENENDQVEAVKRFFAENGKALAVGVILGVGALIGWRYWNS
                     HQVDSARSASLAYQNAVTAVSEGKPDSIPAAEKFAAENKNTYGALASLELAQQFVDKN
                     ELEKAAAQLQQGLADTSDENLKAVINLRLARVQVQLKQADAALKTLDTIKGEGWAAIV
                     ADLRGEALLSKGDKQGARSAWEAGVKSDVTPALSEMMQMKINNLSI"
     gene            complement(9303..10577)
                     /gene="hisS"
                     /locus_tag="JN125_000603"
     CDS             complement(9303..10577)
                     /gene="hisS"
                     /locus_tag="JN125_000603"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HAY8870477.1"
                     /translation="MAKNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLP
                     IVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE
                     QRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEH
                     VTLELNSIGSLEARANYRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQAL
                     LNDAPALGDYLDEESREHFAGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSL
                     GSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFKADPIVDIYLV
                     ASGADTQSAAMALAERLRDELQGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEV
                     TNGTAVVKDLRSGEQTAVAQDSVAAHLRTLLG"
     gene            complement(10688..11806)
                     /gene="ispG"
                     /locus_tag="JN125_000604"
                     /gene_synonym="gcpE"
     CDS             complement(10688..11806)
                     /gene="ispG"
                     /locus_tag="JN125_000604"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HAY8870478.1"
                     /translation="MHNQAPIQRRKSTRIYVGNVPIGDGAPIAVQSMTNTRTTDVEAT
                     VNQIKALERVGADIVRVSVPTMDEAEAFKLIKQRVNVPLVADIHFDYRIALKVAEYGV
                     DCLRINPGNIGNEERIRMVVDCARDKNIPIRIGVNAGSLEKDLQEKYGEPTPQALLES
                     AMRHVDHLDRLNFAQFKVSVKASDVFLAVESYRLLAKQIDQPLHLGITEAGGARSGAV
                     KSAIGLGLLLSEGIGDTLRVSLAADPVEEIKVGFDILKSLRIRSRGINFIACPTCSRQ
                     EFDVIGTVNALEQRLEDIITPMDVSIIGCVVNGPGEALVSTLGVTGGNKKSGLYEDGV
                     RKDRLDNNDMIDQLEARIRAKASQLDEARRIDVQQVEK"
     gene            complement(11833..12846)
                     /gene="rodZ"
                     /locus_tag="JN125_000605"
     CDS             complement(11833..12846)
                     /gene="rodZ"
                     /locus_tag="JN125_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytoskeleton protein RodZ"
                     /protein_id="HAY8870479.1"
                     /translation="MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTV
                     RDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELLPGLEKQAPLRAAKVAPMQSFSL
                     GKRRKKRDGWLMTFTWLVLFVVIGLSGAWWWQDHKAQQEEITTMADQSSAELSSNSEQ
                     GQSVPLNTSTTTDPATTSTPPASVDTTATNTQTPAVTAPAPAVDPQQNAVVSPSQANV
                     DTAATPAPTAATTPDGAAPLPTDQAGVTTPVADPNALVMNFTADCWLEVTDATGKKLF
                     SGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEQS
                     PAQ"
     gene            complement(13131..14285)
                     /gene="trmG/rlmN"
                     /locus_tag="JN125_000606"
     CDS             complement(13131..14285)
                     /gene="trmG/rlmN"
                     /locus_tag="JN125_000606"
                     /EC_number="2.1.1.-"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA
                     large subunit methyltransferase RlmN"
                     /protein_id="HAY8870480.1"
                     /translation="MSEQLVTPENVTTKDGKINLLDLNRQQMREFFKDLGEKPFRADQ
                     VMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQ
                     RVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG
                     AAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPA
                     LDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVT
                     IEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGRSSNSRIDRFSKVL
                     MSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQGEAIDIKAV"
     gene            complement(14435..14866)
                     /gene="ndk"
                     /locus_tag="JN125_000607"
     CDS             complement(14435..14866)
                     /gene="ndk"
                     /locus_tag="JN125_000607"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HAY8870481.1"
                     /translation="MAIERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTV
                     EQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGT
                     LRADYADSLTENGTHGSDSVESAAREIAYFFGEGEVCPRTR"
     gene            complement(15015..17327)
                     /gene="pbpC"
                     /locus_tag="JN125_000608"
     CDS             complement(15015..17327)
                     /gene="pbpC"
                     /locus_tag="JN125_000608"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417014.1"
                     /note="penicillin-binding protein 1C; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase PbpC"
                     /protein_id="HAY8870482.1"
                     /translation="MLRLLTKRGCWITLAAVPFLLFLAAWGADKLWPLPLHEVNPARV
                     VVAQDGTPLWRFADADGIWRYPVTIEDVSPRYLEALINYEDRWFWKHPGVNPFSVARA
                     AWQDLTSGRVISGGSTLTMQVARLLDPHPKTFGGKILQLWRALQLEWHLSKREILILY
                     LNRAPFGGTLQGIGAASWAYLGKSPANLSYSEAAMLAVLPQAPSRVRPDRWPERAEAA
                     RNKVLERMAVQGVWSREQVKESREEPIWLAPRQMPQLAPLFSRMMLGKSKSDKIVTTL
                     DAGLQRRLEELAQNWKGRLPPRSSLAMIVVDHTDMRVRGWVGSVDLNDDSRFGHVDMV
                     NAIRSPGSVLKPFVYGLALDERLIHPASLLQDVPRRTGDYRPGNFDSGFHGPISMSEA
                     LVRSLNLPAVQVLEAYGPKRFAAKLRNVGLPLYLPNGAAPNLSLILGGAGAKLEDMAA
                     AYTAFARHGKAGKLRLQPDDPLLERPLMSSGAAWIIRRIMADEAQPLPDSALPRVAPL
                     AWKTGTSYGYRDAWAIGVNARYVIGIWTGRPDGTPVVGQFGFASAVPLLNQVNNILLS
                     RSANLPEDPRPNSVTRGVICWPGGQSLPEGDGNCRRRLATWLLDGSQPPTLLLPEQEG
                     INGIRFPIWLDENGKRVAADCPQARQEMINVWPLPLEPWLPASERRAVRLPPASTSCP
                     PYGHDAQLPLQLTGVRDGAIIKRLPGAAEATLPLQSSGGAGERWWFLNGEPLTERGRN
                     VTLHLTDKGDYQLLVMDDVGQIATVKFVMQ"
     gene            complement(17328..22289)
                     /gene="yfhM"
                     /locus_tag="JN125_000609"
     CDS             complement(17328..22289)
                     /gene="yfhM"
                     /locus_tag="JN125_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha2-macroglobulin"
                     /protein_id="HAY8870483.1"
                     /translation="MKKLRVAACMLMLALAGCDNNDNAPTAVKKDAPSEVTKAASSEN
                     ASSAKLSVPERQKLAQQSAGKVLTLLDLSEVQLDGAATLVLTFSIPLDPDQDFSRVIH
                     VVDKKSGKVDGAWELSDNLKELRLRHLEPKRDLIVTIGKEVKALNNATFSKDYEKTIT
                     TRDIQPSVGFASRGSLLPGKVVEGLPVMALNVNNVDVNFFRVKPESLPAFISQWEYRN
                     SLANWQSDKLLQMADLVYTGRFDLNPARNTREKLLLPLGDIKPLQQAGVYLAVMNQAG
                     RYDYSNPATLFTLSDIGVSAHRYHNRLDIFTQSLENGAAQQGIEVSLLNEKGQTLTQA
                     TSDAQGHVQLENDKNAALLLARKDGQTTLLDLKLPALDLAEFNIAGAPGYSKQFFMFG
                     PRDLYRPGETVILNGLLRDADGKALPDHPIKLDVIKPDGQVLRSVVSQPENGLYHFTW
                     PLDSNAATGMWHIRANTGDNQYRMWDFHVEDFMPERMALNLTGEKTPLTPNDEVKFSV
                     VGYYLYGAPANGNTLQGQLFLRPLREAVSALPGFEFGDIAAENLSRTLDEVQLTLDDK
                     GRGEVSTESQWKETHSPLQVIFQGSLLESGGRPVTRRAEQAIWPADALPGLRPQFALK
                     SVYDYRTDSTVKQPIVDEGSNAAFDIVYSDAQGVKKAVSGLQVRLIRERRDYYWNWSE
                     DEGWQSQFDQKDLIENEQTLDLKADETGKVSFPVEWGAYRLEVKAPNEAVSSVRFWAG
                     YSWQDNSDGSGAVRPDRVTLKLDKASYRPGDTIKLHIAAPTAGKGYAMVESSEGPLWW
                     QEIDVPAQGLDLTIPVDKTWNRHDLYLSTLVVRPGDKSRSATPKRAVGVLHLPLGDEN
                     RRLDLALETPAKMRPNQPLTVKIKASTKNGEKPKQVNVLVSAVDSGVLNITDYVTPDP
                     WQAFFGQKRYGADIYDIYGQVIEGQGRLAALRFGGDGDELKRGGKPPVNHVNIVAQQA
                     LPVTLNEQGEGSVTLPIGDFNGELRVMAQAWTADDFGSNESKVIVAAPVIAELNMPRF
                     MASGDTSRLTLDITNLTDKPQKLNVALTASGLLELVSDSPAAVELAPGVRTTLFIPVR
                     ALPGYGDGEIQATISGLALPGETVADQHKQWKIGVRPAFPAQTVNYGTALQPGETWAI
                     PADGLQNFSPVTLEGQLLLSGKPPLNIARYIKELKAYPYGCLEQTASGLFPSLYTNAA
                     QLQALGIKGDSDEKRRASVDIGISRLLQMQRDNGGFALWDKNGDEEYWLTAYVMDFLV
                     RAGEQGYSVPTDAINRGNERLLRYLQDPGMMSIPYADNLKASKFAVQSYAALVLARQQ
                     KAPLGALREIWEHRADAASGLPLLQLGIALKTMGDATRGEEAIVLALKTPRNSDERIW
                     LGDYGSPLRDNALMLSLLEENKLLPDEQYTLLNTLSQQAFGERCLSTQESNALFLAAR
                     TIQDLPGKWQAQTSFSAEPLTGEKTLNSNLNSDQLATLQVRNSGDQPLWLRMDASGYP
                     QSAPLPANNVLQIERHILGTDGKSKSLDSLRSGDLVLVWLQVKASNSVPDALVVDLLP
                     AGLELENQNLANGSASLEQSGGEVQNLLNQMQQASIKHIEFRDDRFVAAVAVDEYQPV
                     TLVYLARAVTPGTYQVPQPMVESMYVPQWRATGAAEDLLIVRP"
     gene            22496..23341
                     /gene="sseA"
                     /locus_tag="JN125_000610"
     CDS             22496..23341
                     /gene="sseA"
                     /locus_tag="JN125_000610"
                     /EC_number="2.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-mercaptopyruvate sulfurtransferase"
                     /protein_id="HAY8870484.1"
                     /translation="MSTTWFVGADWLAEHIDDPEIQIIDARMASPGQEDRNVAQEYLN
                     GHIPGAVFFDIKALSDHTSPLPHMLPRPETFAVAMRELGVNQDKHLIVYDEGNLFSAP
                     RAWWMLRTFSVEKVSILGGGLAGWQRDDLLLEEGAVELPEGEFNAAFNPEAVVKVTDV
                     LLASHENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVREGELKTTDE
                     LDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEWGARADLP
                     VEPVK"
     gene            complement(23834..24610)
                     /gene="sseB"
                     /locus_tag="JN125_000611"
     CDS             complement(23834..24610)
                     /gene="sseB"
                     /locus_tag="JN125_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708361.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enhanced serine sensitivity protein SseB"
                     /protein_id="HAY8870485.1"
                     /translation="MSETKNELEDLLEKAATEPAHRPAFFRTLLESTVWVPGTAAQGE
                     AVVEDSALDLQHWEKEDGTSVIPFFTSLEALQQAVEDEQAFVVMPVRTLFEMTLGETL
                     FLNAKLPTGKEFMPREISLLIGEEGNPLSSQEILEGGESLILSEVAEPPAQMIDSLTT
                     LFKTIKPVKRAFICSIKENEEAQPNLFIGIEADGDIEEIIQATGSVATDTLPGDEPID
                     ICQVKKGEKGISHFITEHIVPFYERRWGGFLRDFKQNRII"
     gene            complement(24752..26035)
                     /gene="pepB"
                     /locus_tag="JN125_000612"
     CDS             complement(24752..26035)
                     /gene="pepB"
                     /locus_tag="JN125_000612"
                     /EC_number="3.4.11.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311416.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase PepB"
                     /protein_id="HAY8870486.1"
                     /translation="MTEAMKITLSTQPADARWGEKATYSINNDGITLHLNGADDLGLI
                     QRAARKIDGLGIKHVQLSGEGWDADRCWAFWQGYKAPKGTRKVEWPDLDDAQRQELDN
                     RLMIIDWVRDTINAPAEELGPSQLAQRAVDLISNVAGDRVTYRITKGEDLREQGYMGL
                     HTVGRASERSPVLLALDYNPTGDKEAPVYACLVGKGITFDSGGYSIKQTAFMDSMKSD
                     MGGAATVTGALAFAITRGLNKRVKLFLCCADNLISGNAFKLGDIITYRNGKKVEVMNT
                     DAEGRLVLADGLIDASAQKPEMIIDAATLTGAAKTALGNDYHALFSFDDALAGRLLAS
                     ASQENEPFWRLPLAEFHRSQLPSNFAELNNTGSAAYPAGASTAAGFLSHFVENYQQGW
                     LHIDCSATYRKAPVEQWSAGATGLGVRTIANLLTA"
     gene            complement(26213..26413)
                     /gene="iscX"
                     /locus_tag="JN125_000613"
     CDS             complement(26213..26413)
                     /gene="iscX"
                     /locus_tag="JN125_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004104502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein IscX"
                     /protein_id="HAY8870487.1"
                     /translation="MGLKWTDSREIGEALYDAYPDLDPKTVRFTDMHQWICDLEDFDD
                     DPQASNEKILEAILLVWLDEAE"
     gene            complement(26425..26760)
                     /gene="fdx"
                     /locus_tag="JN125_000614"
     CDS             complement(26425..26760)
                     /gene="fdx"
                     /locus_tag="JN125_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015683702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISC system 2Fe-2S type ferredoxin"
                     /protein_id="HAY8870488.1"
                     /translation="MPKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEK
                     SCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLEPESRLSCQARVTDEDLVVEIPR
                     YTINHAREH"
     gene            complement(26762..28612)
                     /gene="hscA"
                     /locus_tag="JN125_000615"
     CDS             complement(26762..28612)
                     /gene="hscA"
                     /locus_tag="JN125_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001559634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S protein assembly chaperone HscA"
                     /protein_id="HAY8870489.1"
                     /translation="MALLQISEPGLSAAPHQRRLAAGIDLGTTNSLVATVRSGQAETL
                     ADHEGRHLLPSVVHYQQQGHSVGYDARTNAALDTANTISSVKRLMGRSLADIQQRYPH
                     LPYQFQASENGLPMIETAAGLLNPVRVSADILKALAARATEALAGELDGVVITVPAYF
                     DDAQRQGTKDAARLAGLHVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISIL
                     RLSRGVFEVLATGGDSALGGDDFDHLLADYIREQADIPDRSDNRVQRELLDAAIAAKI
                     ALSDADSVTVNVAGWQGEISREQFNELIAPLVKRTLLACRRALKDAGVEADEVLEVVM
                     VGGSTRVPLVRERVGEFFGRPPLTSIDPDKVVAIGAAIQADILVGNKPDSEMLLLDVI
                     PLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRS
                     LARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSE
                     IASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDNAA
                     AHLSEVAQGDDVDAIEQAIKNVDKQTQDFAARRMDQSVRRALKGHSVDEV"
     gene            complement(28629..29144)
                     /gene="hscB"
                     /locus_tag="JN125_000616"
     CDS             complement(28629..29144)
                     /gene="hscB"
                     /locus_tag="JN125_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012131249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone HscB"
                     /protein_id="HAY8870490.1"
                     /translation="MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQ
                     LAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREEL
                     DEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTVRKLRFLDKLRSS
                     AEQLEEKLLDF"
     gene            complement(29240..29563)
                     /gene="iscA"
                     /locus_tag="JN125_000617"
     CDS             complement(29240..29563)
                     /gene="iscA"
                     /locus_tag="JN125_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017373466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein IscA"
                     /protein_id="HAY8870491.1"
                     /translation="MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEF
                     VDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCG
                     ESFHV"
     gene            complement(29580..29966)
                     /gene="iscU"
                     /locus_tag="JN125_000618"
     CDS             complement(29580..29966)
                     /gene="iscU"
                     /locus_tag="JN125_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000331707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold IscU"
                     /protein_id="HAY8870492.1"
                     /translation="MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQ
                     IKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLVEAQAIKNTDIAEELELPPV
                     KIHCSILAEDAIKAAIADYKSKREAK"
     gene            complement(29994..31208)
                     /gene="iscS"
                     /locus_tag="JN125_000619"
     CDS             complement(29994..31208)
                     /gene="iscS"
                     /locus_tag="JN125_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311423.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HAY8870493.1"
                     /translation="MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFG
                     WQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKT
                     EHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVV
                     QDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYV
                     RRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNR
                     LWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLAVSSGSACTSASLE
                     PSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQ
                     GVDLNSIEWAHH"
     gene            complement(31320..31808)
                     /gene="iscR"
                     /locus_tag="JN125_000620"
     CDS             complement(31320..31808)
                     /gene="iscR"
                     /locus_tag="JN125_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002913993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly transcriptional regulator
                     IscR"
                     /protein_id="HAY8870494.1"
                     /translation="MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQ
                     LFSRLRKNGLVSSVRGPGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQGGD
                     KCLTHALWRDLSDRLTGFLNNITLGELVNNQEVLDVSGRQHTHDAPRTRTQDAIDVKL
                     RA"
     gene            complement(32078..32818)
                     /gene="trmJ"
                     /locus_tag="JN125_000621"
     CDS             complement(32078..32818)
                     /gene="trmJ"
                     /locus_tag="JN125_000621"
                     /EC_number="2.1.1.200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ"
                     /protein_id="HAY8870495.1"
                     /translation="MLQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDS
                     QAIALAAGASDVIGNAHIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA
                     EAANTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAW
                     LATQENGEQVEHEETPYPLVDDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTR
                     ARPESQELNILRGILASIEQQNKGNKAE"
     gene            32937..33740
                     /gene="suhB"
                     /locus_tag="JN125_000622"
     CDS             32937..33740
                     /gene="suhB"
                     /locus_tag="JN125_000622"
                     /EC_number="3.1.3.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000553460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-1-monophosphatase"
                     /protein_id="HAY8870496.1"
                     /translation="MHPMLNIAVRAARKAGNLIAKNYETPDAVEASQKGSNDFVTNVD
                     KAAEAVIIDTIRKSYPQHTIITEESGELEGTDQDVQWVIDPLDGTTNFIKRLPHFAVS
                     IAVRIKGRTEVAVVYDPMRNELFTATRGQGAQLNGYRLRGSTARDLDGTILATGFPFK
                     AKQYATAYINIVGKLFNECADFRRTGSAALDLAYVAAGRVDGFFEIGLRPWDFAAGEL
                     LVREAGGIVSDFTGGHNYMLTGNIVAGNPRVVKAMLANMRDELSDALKR"
     gene            33885..34739
                     /locus_tag="JN125_000623"
     CDS             33885..34739
                     /locus_tag="JN125_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311427.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAY8870497.1"
                     /translation="MALPVNKRVLKILFILFVVAFCVYLVPRVAINFFYYPDDKIYGP
                     DPWSAESVEFTAKDGTRLQGWFIPSSTGPADNAIVTIIHAHGNAGNMSAHWPLVSWLP
                     ERNFNVFMFDYRGFGKSKGTPSQAGLLDDTQSAINVVRHRSDVNPQRLVLFGQSIGGA
                     NILAVIGQDDREGIRAVILDSTFASYATIANQMIPGSGYLLDESYSGENYIASVSPIP
                     LLLIHGKADHVIPWQHSEKLYSLAKETKRLILIPDGEHIDAFSDRHGDVYREQMVDFI
                     LSALNPQN"
     gene            34930..36225
                     /gene="csiE"
                     /locus_tag="JN125_000624"
     CDS             34930..36225
                     /gene="csiE"
                     /locus_tag="JN125_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417030.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stationary phase inducible protein CsiE"
                     /protein_id="HAY8870498.1"
                     /translation="MMPTLAPPSVLSAPQRRCQILLTLFQPGLTATMATFSELNGVDD
                     DIASLDISETGREILRYHQLTLTTGYDGSYRVEGTVLNQRLCLFHWLRRGFRLCPSFI
                     TSQFTPALKSELKRRGIARNFYDDTNLQALVNLCSRRLQKRFETRDIHFLCLYLQYCL
                     LQHHAGITPQFNPLQRRWAESCLEFQVAQEIGRHWQRRALQPVPPDEPLFMALLFSML
                     RVPDPLRDAHQRDRQLRQSIKRLVNHFRELGNVRFYDEQGLCDQLYTHLAQALNRSLF
                     AIGIDNTLPEEFARLYPRLVRTTRAALAGFESEYGVHLSDEESGLVAVIFGAWLMQEN
                     DLHEKQIILLTGNDSEREAQIEQQLRELTLLPLNIKHMSVKAFLQTGAPRGAARRGAA
                     LIIAPYTMPLPLFSPPLIYTDLTLTTHQQEQIRKMLESA"
     gene            complement(36217..37356)
                     /locus_tag="JN125_000625"
     CDS             complement(36217..37356)
                     /locus_tag="JN125_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phenylpropionate MFS transporter"
                     /protein_id="HAY8870499.1"
                     /translation="MVLQSTRWLALGYFTYFFSYGIFLPFWSVWLKGIGLTPETIGLL
                     LGAGLVARFLGSLLIAPRVSDPSRLISALRVLAMMTLLFAVAFWAGAHVAWLMLVMIG
                     FNLFFSPLVPLTDALANTWQKQFPLDYGKVRLWGSVAFVIGSALTGKLVTMFDYQVIL
                     ALLTLGVASMLLGFLIRPTIQPQGASRQQESTGWSAWLALVLQNWRFLACVCLLQGAH
                     AAYYGFSAIYWQAAGYSASAVGYLWSLGVVAEVIIFALSNKLFRRCSARDMLLISAIC
                     GVVRWGIMGATTALPWLIVVQILHCGTFTVCHLAAMRYIAARQGSEVIRLQAVYSAVA
                     MGGSIAIMTVFTGFLYQYLGHGVFWVMALVALPAMFLRPKVVPSC"
     gene            complement(37516..>37969)
                     /locus_tag="JN125_000626"
     CDS             complement(37516..>37969)
                     /locus_tag="JN125_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311430.1"
                     /note="activator of 3-phenylpropionic acid catabolism;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HAY8870500.1"
                     /translation="HPVYSPEIDYLELFDEPLVVVLPVDHPLAHEKEITAAQLDGVNF
                     VSTDPAYSGSLAPIVKAWFAQENSQPNIVQVATNILVTMNLVGMGLGVTLIPGYMNNF
                     NTGQVVFRPIAGNVPSIALLMAWKKGEMKPALRDFIAIVQERLASVTA"
BASE COUNT         8974 a        10547 c         9465 g         8983 t
ORIGIN      
        1 aagccttcgg cgcgcttatt ggcgcagtcg ctggcggtgt tatcggccac aacgtcggtt
       61 ctggcagcaa ttccggaacg acggcagggg cagttggcgg cggagctgta gccgcggcag
      121 cgggttctat ggtgaatgat aaaaccttag tggaaggtgt ttctttaaca tataaggaag
      181 gcaccaaagt gtatacctct acacaggtgg gtaaagagtg ccagtttacg acaggtttag
      241 ccgttgttat taccacaacg tataacgaaa cgcgtattca gccaaatact aaatgtcctg
      301 aaaagagcta ataatcagga ggagtcatga agaaagtttt tctttgcgcc atcttggcct
      361 ccttaagcta tccggctatc gcctcatcat tgcaggatca actctctgct gtagcagaag
      421 cggaacagca aggtaaaaat gaagagcaaa ggcagcatga cgaatgggtc gcggagcgca
      481 acagggaaat ccagcaagag aagcaacgtc gcgcaaatgc ccaggtcgcc gctaacaaaa
      541 gagcggcaac ggcagcagca aataagaaag ctcgtcagga taaactggac gccgaagcct
      601 ctgcggacaa aaaacgcgat caaagttatg aagatgagct acgcagctta gagattcaga
      661 aacaaaaact ggcgctggca aaagaagaag cccgcgttaa gcgagaaaac gaatttatcg
      721 atcaggaact gaagcacaaa gctgcgcaaa ccgatttggt gcaatctgaa gctgacgcca
      781 acagaaatat gactgaaggc ggtcgcgatc tgatgaaaag cgtgggcaaa gcagaagaga
      841 acaaatcgga cagctggttt aattaatcga tgttagtaac ttcaagccta tgattcttga
      901 agataaaaaa ccctctgtag taacagaggg ttttgttcat tcatagtgca gggattaaaa
      961 tcattcccac tcaatggtag ctggcggctt gccgctgatg tcatacacca cgcgggaaat
     1021 accgttcact tcattgataa tgcggttgga aacgcgaccg aggaaatcgt acggcagatg
     1081 cgcccagtgt gcggtcataa agtcgatggt ttcgacagca cgcagagaga caacccagtc
     1141 atacttacga ccatcgccca ttacgccaac ggaacgtacc ggcaggaaca cagtgaacgc
     1201 ctggctgact ttgttgtaca ggtccgcttt acgcagttct tcaatgaaga tggcgtcagc
     1261 acggcgcagc aggtcacagt actctttctt cacttcaccc agcacacgaa cgccaaggcc
     1321 tggtcccggg aacgggtgac ggtacagcat gtcgtacggc aggcccagct ccagaccaat
     1381 cttacgcact tcgtctttga acagctcttt cagcggttca accaggccca tcttcatctc
     1441 tttcggcagg ccgcccacgt tgtggtgaga tttgatgacg tgtgctttac cggttgcaga
     1501 agccgcagat tcgataacgt cagggtagat ggtgccctgc gccagccact tcacgtcttc
     1561 cagtttcagc gcttcttcat cgaacacttc aacgaaaacg cgcccgatga ttttacgttt
     1621 tgcttccgga tcgttttcgc cagccagcgc tgacaggaag cgatcttctg ccggtacgtg
     1681 aacaatgttc agaccaaagt gatcgccaaa catatccaga acctgctctg cttcgttgag
     1741 acgcagcagg ccgttgtcga cgaatacgca agtcaggttt ttaccgatag cgcggtgcag
     1801 cagcattgcg gttacggagg aatccacacc accagagagg ccgaggatga ctttatcgtc
     1861 gcctacctgc tcgcggatgc gagctacagc atcgtcgata attttcgctg gcgtccacag
     1921 ggcttcacac tggcagatat cacgcacaaa acgctccagc atgtgcatac cctggcgggt
     1981 gtgagtcact tccgggtgga actgtacgcc atagaagcgt ttttcttcgt tagccataat
     2041 ggcaaacggg cagctttcgg tgctggctac ggtgacgaag tcggacggga tagcggtaac
     2101 tttatcgccg tggctcatcc agacatcgag cagcggttta ccgtctgcgg tcagcgcatc
     2161 ttcgataccg cgaaccagtg cgctgtcgtt tacgacttca acctgcgcgt agccaaattc
     2221 acgttcgtta gaggcttcaa cgtgaccgcc caactgcatt gccatggtct gcatgccata
     2281 gcaaacgccg aataccggta cgcctgcttc aaagacatac tgcggcgcac gcggactgtt
     2341 ttcttcagta gtactttccg ggccgccgga aagaataatg ccgcttggat tgaagtcacg
     2401 aatttgtgct tctgtcacat cccacgccca cagttcgcag taaacaccca gctcacgcac
     2461 gcggcgcgca accagttgag tgtactgaga accgaagtcc agaatgagga tgcgatgctt
     2521 atgaatgttt tccgtcattg acgcttattc cgaggcaagt gaaacagata atataaatcg
     2581 cccgacatga agtcgggcga agagaatcag gagcccagac ggtagttcgg ggactcttta
     2641 gtaatggtca cgtcgtgaac gtggctttcc tgaatgcccg caccgctgat acgtacaaac
     2701 tccgctttag tacgcagttc gtcgatagta ccacagccgg tcaggcccat acaggagcgc
     2761 aggccgccca tctgctggtg aatgatctct ttcaggcgac ctttataggc tacgcgacct
     2821 tcgatacctt ccggcaccag tttgtcggca gcgttgtcac tctggaagta acggtcagaa
     2881 gaacctttgg acatcgcacc cagagagccc ataccacggt aagatttgta agaacggccc
     2941 tggtagagtt caatttcacc cggagattct tcagtacccg ccagcatgga acccaccatt
     3001 accgcgcttg cgccagcggc gatagctttg gcgatgtcgc cggagaagcg aataccacca
     3061 tctgcgataa ccggaatacc tgtgccttcc agcgcttcaa ctgcgtcagc aacggcagtg
     3121 atctgcggaa cacctacgcc agtaacgata cgagtcgtac agatagaacc agggccgata
     3181 ccgactttaa ccgcgctgca accagcttct gccaaagcgc gtgcacctgc agctgttgcc
     3241 acgttgccgc cgatgatttg cagatccgga tatttagcac gggtttcacg gatacgctgc
     3301 aaaacgcctt ctgagtggcc gtgggaggag tcgatcagca gaacgtcaac gccagcggca
     3361 accagcgcgt caacacgctc ttcgttaccc gcacctgcgc caactgcagc accaacacgc
     3421 agacggcctt gctcgtcttt acaggcgttc ggtttacgtt ccgctttctg gaagtctttc
     3481 acggtgatca tgccgatcag gtggaattcg tcatcaacca ccagcgcttt ttcaacgcgt
     3541 ttttcgtgca tttttgccag caccacttca cgggcttcac cttcacgcac ggtgaccaga
     3601 cgctctttcg gcgtcatgta aacgctaacc ggctggttca ggtcggtaac aaaacgcacg
     3661 tcacgaccgg tgataatacc caccagttcg ttttcttcgg taacaaccgg atagcccgca
     3721 aaaccgttac gctcggtcag ttctttcact tcgcgcagcg tcgtggttgg cagaacagtc
     3781 tgcggatcag tcaccacacc agattcgtgt tttttcacac ggcgaacttc ttctgcctgg
     3841 cgttcaatgg acatgttttt gtggataaag ccgataccgc cttcctgagc cagagcaata
     3901 gccaggcgcg cttccgttac ggtatccatt gctgcggaaa gcatagggat attcagacga
     3961 atagttttcg tcagctgggt gctgaggtca gcagtattcg gcagaacggt agaatgagca
     4021 ggaacgagga gaacgtcgtc aaacgtcaga gcttctttag cgatacgtag catgggcaat
     4081 atctcgacca gagtggttaa taaatattgc cgcggcatta tacagagcgt aaccgattgc
     4141 atctacccct ttttgcaaaa aatgcttgct atccccgaag ggcgggttac tatcgactga
     4201 ataacctgct gatttagaat ttgatctcgc tcacatgtta ccttctcaat cccctgcaat
     4261 ttttaccgtt agtcgcctga atcaaacggt tcgtctgctg cttgagcatg agatgggaca
     4321 ggtttggatc agcggcgaaa tctctaattt cacacaaccg gcttccggtc actggtactt
     4381 tacactcaaa gacgacaccg cccaggtacg ctgcgcgatg ttccgcaaca gcaaccgccg
     4441 ggtgaccttc cgtccacagc atggacaaca agttttagtt cgcgccaata ttacgctcta
     4501 cgagccgcgc ggtgactacc agataatcgt tgagagtatg cagccggccg gtgaagggct
     4561 gctgcaacag aagtacgaac agctcaaagc gaagttgcag gctgaaggtt tgttcgatca
     4621 gcaatacaaa aaaccacttc cctcccctgc gcattgcgtt ggtgtgatca cctcaaaaac
     4681 cggtgctgcg ctacatgata ttttgcatgt gttaaaacgt cgcgatcctt ctctaccggt
     4741 gatcatctac cccaccgccg ttcagggcga tgacgcaccg gggcaaattg ttcgcgccat
     4801 tgaactggcg aatcagcgca atgagtgcga cgtgttgatc gttgggcgcg gcggcggttc
     4861 gctggaagat ttatggagtt ttaacgacga acgcgtagcg cgggcgattt ttgccagccg
     4921 cattccggtc gtcagcgccg tcgggcatga gacggatgtg accattgccg attttgttgc
     4981 cgatctgcgt gcgccaacgc cgtctgccgc cgctgaagta gtgagccgta atcagcaaga
     5041 gttactgcgc caggtgcaat cgacccgtca acggctggag atggcgatgg attattatct
     5101 cgccaaccgc acgcgtcgct ttacgcagat ccatcaccga ttacagcaac agcatccgca
     5161 gctccggctg gcacgccagc aaaccatgct tgagcgcctg caaaagcgga tgagctttgc
     5221 gctggaaaat caacttaagc gtaccgggca acagcagcag cggttaacac agcggctgaa
     5281 tcagcaaaat ccacagccga agattcatcg cgcgcaaacg cgcattcagc aactggaata
     5341 tcgtttagca gaaaccctgc gcgtacagct tagcgccacg cgtgaacgtt tcggtaatgc
     5401 agtaacgcac ctcgaagccg taagcccact gtcaacgctg gcgcgtggat acagcgttac
     5461 tactgctact gacggcaatg tactgaaaaa agtgaagcaa gttaaagcgg gtgaaatgct
     5521 aaccacacgt ctggaagacg gctggataga aagtgaagtt aaaaacatcc agccagtaaa
     5581 aaaatcgcgt aaaaaggtgc attaagccag cacgaattca acgcgttttt tcgatatcaa
     5641 gccatgcccg tgctgacaga agtaatctac tgcaccgcag gcttttaaca cctgcaacgg
     5701 ttgatggcag tctggacaaa gagctttcat ttcaataatt tccccgcagg atgggcaacg
     5761 cgcatggccg ttatcctgat caagcacatg ctgacattgt ggacaatgca gttccatatg
     5821 aattcctccg gtagccatcc ctctacattc atagagggaa tggcagataa aatacttacg
     5881 gataattatt tatttttctt gatgtgcttc atcagacgct tacgtttacg catctgggtt
     5941 ggcgtcaggg tgttacgctt gttcgcatac gggttttccc cttctttgaa ctgaatacga
     6001 atcggcgatc ccattacgtc cagcgatttg cggaagtagt tcatcaagta gcgcttgtag
     6061 gaatcaggca ggtctttcac ctgattaccg tgaatcacca caatcggcgg gttataacca
     6121 ccagcgtggg catatttcag cttcacacga cgaccgcgta ccagcggcgg ttggtgatct
     6181 tcaacagcca tcgtcatgat gcgcgtcagc atagaggtcc ccacacgacg ggtggagctg
     6241 tcatacgctt cacgtactga ttcaaacaag ttaccaacac cactgccgtg caaggcagag
     6301 ataaagtgca cacgagcaaa atcgataaag cccagacgga agtccagcgt ttctttcacc
     6361 tgctctttca cttcctggct caggccatcc cacttattca ccacaatgac aagtgagcgc
     6421 ccactattga gaataaagcc cagcagcgag agatcctgat cggaaatacc ttcgcgcgca
     6481 tcaatcacta acatcaccac gttggcatct tcaatggcct gcaacgtttt gattacggag
     6541 aatttctcta cagcatcggt gattttgccg cgtttacgta cgccagcggt gtcaatgagc
     6601 acatactcac gtccatcgcg ttccattgga atgtagatac tgtcacgcgt cgtgccaggc
     6661 atgtcataaa caacaacgcg ctcttcacca agaatacggt tagtgagtgt agacttacct
     6721 acgttcggac gacccacaat cgccagtttg atcggcagac tttgcgggtc gaagtcgtct
     6781 tcctcttctt cttcgccgtt ctcttccgct tcaaattgcg cccagtattc agcgtcttcg
     6841 tcgacttcct cttgcggtgc gagatcttcc atccacggca gcagcacatg ctccagcaga
     6901 cttaatacgc cacgaccgtg agacgcggcg atcgggtaga tttcacctaa gccaagcgag
     6961 tagaaatcaa ccactgcctg atcgggatcc agaccgtcaa ttttgtttgc caccaggaag
     7021 gtcggttttt cacgggagcg cagatgtttg gcaatcgctt catctgccgg catcaggccc
     7081 gcgcgcgcat ccaccataaa cagtacgacg tccgcttctt caatcgccag cagcgactgt
     7141 tccgccatgc gggtttctac accgtcttct gtgccatcaa tcccgccggt atcaatacag
     7201 ataaactcac ggccttcaat ttccgcacga ccgtacttac ggtcacgagt cagacccggg
     7261 aaatccgcaa ccagcgcatc tcgggtgcga gttagacggt taaataacgt ggattttcct
     7321 acgttagggc gcccgacaag cgcgaccaca ggtaccatgt ttaaagcctc atttttataa
     7381 atcatcagac aacgcacgct atattcgcgt cgttgttaaa aacaggaaaa cggcccctgt
     7441 ccaggagccg ttttcaaagt gaacgacaga gacgattaac gtgtaataga gtacacggtt
     7501 ccgtcttttg cctggatcag cagtttgccg tcagcggcaa ccggttcagt ctggaaaccg
     7561 gaactatcaa ctttttgctg ggcaacgaaa cgaccatctt cgacattaat ccagtgcaga
     7621 taaccttcac tgtcaccgac caccaggttg ccatcataca gcaccggaga agtcagcagg
     7681 cgatgcaaca gatcgctttg tgtccacagc gtaacgccgc catcaatggt caacgccatc
     7741 acccggtcat tttgatcgac cagatagatg cgattgccgt cgacgatgaa atcattcacc
     7801 gaacccagtt cgcgtttcca cataatctga ccactgcgca gatcaagcgc cgtcaggtta
     7861 ccattatagg ccagcgcgaa aacaacgccg ttaacaacga cgggagtcgt gtcaacatcg
     7921 cttagacggt caatttcggt agaaccggtc gcctgggaaa tacgctgctg ccaaatcatc
     7981 tggccctgtt ccatcagcac tgcgctgacg cgaccattat cgccccccac gacggccgca
     8041 ccaaaagccg ttgccggcgc agactcgcca cgcaaagaga gcgaaggcat atcgaggtta
     8101 actgtccatt tgacagcgcc gtcagcttcg ttcagcgctt gtaactgacc gttactggtg
     8161 tggattaaca ccagaccgtc gctgaccacc gggcgcgaaa gtgcttcacc cgcgacttta
     8221 gtttgccatg ccacagtacc atcgctggta ttcagcgcgt aaacctgcgc cttttcgctg
     8281 ccaatgtaga catgcccacc aaacacggtc acaccgccag aaagtaatgc aggctcttta
     8341 gagaaccagc catctttctc ggccaggctg acagaccaga tttctttgcc atcatccgca
     8401 ttcagcgctt ttaccaaacc agcgcggtcc gctgcataga caacgttgtc cgccagtgcc
     8461 ggatgaagat tggaatagaa gttgccaatg ccgctaccaa cagaagtact ccacgccgtg
     8521 gtcggcgtaa actggttttc aacggttggc aatggggaca tctttaccac atcttcttcg
     8581 ctgttaaaca gcgaacagcc gcttaaaagg gtaacggaaa gcagtcctgg cagcagtaat
     8641 ttacgcaatt gcatcgggtc cctctcagat ggacaaatta ttaattttca tctgcatcat
     8701 ttcgctcagt gccggagtaa catcgctttt cacgcctgct tcccatgcac tacgcgcacc
     8761 ttgcttatca cctttgctca gcaatgcttc accacgcagg tcggcaacaa tggcagccca
     8821 cccttcacct ttgatggtat caagggtttt cagcgcggca tcagcctgct tgagctgtac
     8881 ctgaacgcga gcaagacgca gatttatcac ggctttgaga ttttcatcgc tcgtgtctgc
     8941 cagcccctgt tgtaactggg cggcagcttt ctctagttca tttttgtcaa caaattgctg
     9001 cgcaagttcc aaagaagcca gcgcaccata agtattttta ttttcagcag caaatttttc
     9061 cgccgccggg atgctatccg gtttgccttc gctcactgcg gtaaccgcat tttgataggc
     9121 aagagaagcg gagcgtgcag aatcaacctg atggctgttc cagtagcgcc agccaatcag
     9181 tgcgccaacg cccaaaatca ccccaacagc cagtgctttg ccattttcag caaaaaagcg
     9241 tttaaccgct tctacctggt cgttttcgtt ctcgtaaatt tccacgctgt ccttctcctt
     9301 ccttaaccca gtaacgtgcg caaatgcgcg gctacgctat cctgcgcaac tgccgtttgc
     9361 tcaccagagc gcaaatcctt cactactgct gtgccgttag tcacttcaga ctcacccagc
     9421 accacagcaa cgcgggcacc ccatttatca gcacgggcaa actgtttctt aaagttgccg
     9481 ccgccgtggt tggtcatcaa tttcacgccc tgtaattcat cacgcagacg ctcagctaat
     9541 gccatagccg cagattgtgt atcagcacct gaagccacca ggtatatatc gacaatagga
     9601 tcggctttaa attccggatt aacggcctgt actaacaata caagacgttc gaggcccatc
     9661 gcaaaaccga cagccggtgt tgcacgaccg cccagttgtt ccacaagacc gtcataacga
     9721 ccgcctgcac acacggtgcc ctgggagccg agactgttag tcacccactc gaaaacggta
     9781 cggttatagt aatccagacc acgcaccaga cgctggttta cggtgtaagc gatccccgcg
     9841 ctctcaagca gtttgcacag accggcaaaa tgctcacgag attcctcgtc cagataatca
     9901 cctaatgccg gagcgtcgtt gagaagcgcc tgcacttccg gattttttga atccagcacg
     9961 cgcagcgggt tagtgtacat gcggcgtttg cagtcttcgt ccagcttttc tttatgctgc
    10021 tcaaggaatg ccaccagcgc atcgcggtaa ttggcgcgtg cttccagcga accgatagaa
    10081 ttcagctcaa gagttacgtg ttcggaaata cccagcgcgc gccaccagcg ggcggtgagc
    10141 ataatcagtt cagcgtcgat atccggacct tgcagaccga aaacttcgca gcccaactga
    10201 tggaactgac gataacgccc tttctgcgga cgctcgtgac ggaacatcgg cccgatatac
    10261 cacagacgct gttcctgatt gtacagaaga ccatgctcga tgccggcgcg tacacagccc
    10321 gccgtccctt cagggcgcag agtcaggctg tcgccattgc gatcctcaaa ggtgtacatc
    10381 tctttttcaa ccacgtcggt gacttcacca atcgcacgtt tgaatagcgg ggtctgctct
    10441 acaatcggca agcggatttc actgtaaccg tagctgccga gcacgttttt cagtgtgcct
    10501 tcaatgcgct gccagatggc cgtttcgcca ggcaggtaat cgttcatgcc gcgaatggct
    10561 tgaatgtttt ttgccacgtt tattctcttt ctgaatataa aaatgaaccc tcaacgcttc
    10621 cctcaatgtt tggggagcca tgcgggttca atcatacacg ggaagcgagg cgcttcccat
    10681 cacgttatta tttttcaacc tgctgaacgt caattcgacg cgcttcatcc agctgactgg
    10741 ctttcgcacg aatgcgtgct tccagctggt cgatcatatc gttgttgtcc agacggtctt
    10801 tgcgcacgcc atcttcatag aggccgcttt tcttgttgcc gccggtgacg ccgagtgtag
    10861 aaaccagcgc ctcacctggg ccattcacca cgcagccgat aatcgaaacg tccatcggag
    10921 tgatgatatc ttccaggcgt tgctccagcg cgttaaccgt accgataaca tcaaattcct
    10981 gacgcgaaca ggtcgggcag gcgatgaagt tgatccctcg cgaacggata cgcagcgatt
    11041 tcaaaatatc gaaaccgact ttgatctctt cgaccggatc ggccgccagc gatacgcgca
    11101 gcgtgtcgcc gatgccttca gacagcagca gacctaaacc aatggcggat tttactgccc
    11161 cgctgcgtgc accaccggct tcggtgatcc ccagatgcag cggctgatcg atctgttttg
    11221 ccagcaaacg ataagactca acagcgagga agacgtcaga cgctttcacg ctgactttga
    11281 actgagcgaa gttcaggcga tcgagatgat caacatgacg catggcggat tccagcaacg
    11341 cctgcggcgt cggttcgcca tacttttctt gcagatcttt ttccagcgat ccggcgttaa
    11401 cgccaatacg gatcggaatg tttttatcgc gcgcacagtc aaccaccatg cgaatacgct
    11461 cttcattacc gatattgcca gggttaatac gcagacaatc gacgccgtat tccgctactt
    11521 tcagcgcaat gcgatagtcg aagtggatgt cagccaccag cggcacgtta acccgctgtt
    11581 tgatgagttt gaacgcttct gcctcgtcca tcgtcggtac ggagacacgg acgatatcag
    11641 cgccaacgcg ttccagcgcc ttgatttgat tgaccgttgc ttcgacatct gtcgtacgcg
    11701 tattggtcat ggactgtacg gcgatgggag caccatcgcc aatcggcaca ttcccaacgt
    11761 aaatacgtgt tgattttcta cgttgaattg gagcctggtt atgcatgaaa aatctcccgc
    11821 gttacccgtc tgttactgcg ccggtgattg ttcggcattg agggtcagac gcgcaacctg
    11881 gttagttctg ataaaacgac tcagatcgac aggtttccct tgatactgga tctgtactgc
    11941 ggctggcgca ccaattttca gtttgtacgg tgcctggccg gttaagttca aattaccgtc
    12001 tttacgctgc ataccgctaa acaatttttt accggtagca tcagtgacct ccagccagca
    12061 atcggcagta aagttcatca ccagcgcatt cggatcagcc accggcgtgg tcacgccagc
    12121 ctgatcggtt ggcaacggcg cagcaccatc tggcgttgtt gctgccgttg gtgccggggt
    12181 cgcggcggta tcaacatttg cctgcgaagg cgaaacaacc gcattctgtt gcggatcaac
    12241 agctggtgct ggcgcagtta cggcaggtgt ttgcgtgttg gttgcggtag tatccacaga
    12301 cgctggcggc gtggacgttg tagccgggtc tgtagttgtc gacgtattta acggaacact
    12361 ctgcccctgc tcgctattac tgctcagttc cgccgaagat tgatcggcca tagtggtgat
    12421 ctcttcctgc tgagctttgt ggtcttgcca ccaccaggca ccgctcaggc cgataaccac
    12481 aaacagcacc agccaggtga aggtcatcag ccagccgtca cgttttttgc ggcgtttacc
    12541 gagggaaaaa ctctgcatcg gcgcaacttt cgcagcccgt agtggagcct gcttttccag
    12601 ccctggcagc agttcttctt ctggaatatg taccagacgc gcataagagc ggatatatcc
    12661 gcgcaggaat gttgaagcaa gatcggcggg tgccttatct tcttcaatgt cgcgtaccgt
    12721 ggaaaccttc aggcaaagtc gctcggcaac ggcctgctga ctaagtccta gttgttcgcg
    12781 agcattacgc aggcgagcgc cggtagtaag tgcttcattt tggtcgtgcg tggcttcagt
    12841 attcattcgc tgcaggtacg tttaaatgag aattgagatg ccggtgaacc atcatgctca
    12901 cccacaccgc gaaacatccg ttaagttaac cgttatcata cagtataaga ccgtctgtgt
    12961 gctcgtgaca aagcccacat tcactaaggc taacttactg ttgcatcgtt acatactgcc
    13021 ttaaagtcag caaaaacgca ccgttaatat tgaccagaca attgcaactt aatacttcat
    13081 tcataaaaga ttacgccacg gtacataaag taaccgtggc gtaatggcta tcagactgct
    13141 ttaatgtcga tggcttcacc ctgcatccgt ttacgcaggg tacgtttcgt acggtcgata
    13201 acatcgcccg ccaactgacc acaggcagca tcgatatcat caccacgagt tttacgcaca
    13261 atagtggtga aaccgtagct catcagcact tttgagaaac ggtcgatacg gctgttcgaa
    13321 ctgcgtccat acggcgcgcc cgggaacggg ttccacggga tcaggttgat cttacacggc
    13381 gtatctttca gcagctccgc cagttggtgc gcgtgttcag tgccgtcgtt aacgtggtca
    13441 agcatcacgt attcaatagt gactcggccc tgattggcgt tggatttctc cagataacgg
    13501 cgcaccgcag caaggaacgt ttcgatattg tactttttgt tgatcggcac aatttcgtca
    13561 cgaatttcgt cgttcggcgc gtgcagggaa attgccagtg caacgtcgat catatcgccc
    13621 agtttatcca gcgccggaac tacaccggaa gtagaaagcg tgacgcgacg tttagacagg
    13681 ccaaaaccga aatcatcaag catgatttcc atcgccggaa cgacgttgtt caggttgagc
    13741 agcggctcgc ccatgcccat catcactacg ttagtgattg ggcgctgacc ggtgactttt
    13801 gctgcgccga cgattttcgc cgcacgccac acctggccga taatttccga cacccgcagg
    13861 ttgcggttaa agccctgctg ggcggtggaa cagaatttac actccagcgc acaccccacc
    13921 tgcgaagaga cgcagagcgt ggcacggtcg tcttccggga tatacaccgt ttcgacgcgc
    13981 tgatcgccaa cggcgatcgc ccatttaatg gtgccgtcgg atgaacgctg ttcttcaacc
    14041 acttccggtg cgcggatttc cgccacctct ttcagtttgc cgcgcaacac tttgttgatg
    14101 tcggtcatct catcaaagtt gtcgcagcaa tagtgataca tccacttcat cacctgatcg
    14161 gcgcggaagg gtttttcacc taaatcttta aaaaactccc gcatctgctg acggttgaga
    14221 tccagcaggt tgatttttcc atctttcgtg gtgacgtttt caggtgtgac taattgttca
    14281 gacatatgct attccggcct cgttattaca cgttatggcc cctggagggt tgaaaaaaga
    14341 aacgccccgg tgagcggctg ctcgtccggg ggcgctgcat tgtacaaatt ctggcgcacg
    14401 gatgccacgt ttgcacgcgg catttacgaa attattaacg ggtgcgcggg cacacttcgc
    14461 cttcgccaaa gaaataagcg atttcgcgag cggcagattc gacggaatca gaaccgtggg
    14521 taccgttttc ggtcaggctg tcagcgtaat cagcgcgcag agtaccagcc agtgcgtttg
    14581 ccggattggt cgcgcccagc agatcgcggt gacgctgaac ggcgttttca ccttccagca
    14641 cggaaaccac gatcgggcca gaggtcatga attcaaccag accatcaaag aacggttttc
    14701 catcgtgttc agcataaaag ccacgtgcct gttcaacggt caggtgcagc attttggtgc
    14761 cgacaatttt gaaccctgca gcttcaaagc gcgcaaagat attaccaatg acgttttttg
    14821 ctaccgcgtt cggtttgatg atggaaaaag tacgttcaat agccattttt acctctgtaa
    14881 attgttctgt tgttgtctgt accagcgtac gagatggcgc ggattataat gagcaacagg
    14941 gccgttgact attgatgaag gtaacatttt tttaaaataa aatgagtttt agcaacaatc
    15001 agggacaaaa cagactattg catgacaaat ttcactgtcg cgatttgccc cacgtcatcc
    15061 atcaccagca attgataatc acctttatcc gtcaaatgca gggtcacgtt gcgcccgcgt
    15121 tcagttaacg gttcgccatt cagaaaccac cagcgttcac ctgcccctcc acttgattgc
    15181 aacggcaaag tcgcttccgc tgcgcccggt aaacgtttaa taatcgcgcc atcgcgaacg
    15241 cctgtcagct gcagcgggag ctgggcatcg tgaccgtatg gcgggcaact tgtcgaggcc
    15301 ggtggtaagc gcacagcgcg acgttctgat gcgggcagcc agggttccag cggtagcggc
    15361 cagacattta tcatttcttg tcgcgcttgc gggcaatcag cggcaacacg tttgccattt
    15421 tcatccagcc agatggggaa acgaatgcca ttaatgcctt cctgctccgg cagtaataga
    15481 gttggcggct gactcccgtc cagcagccag gttgccaggc ggcggcgaca gttaccgtca
    15541 ccttccggca aagactgtcc gcccggccag cagataacgc cacgagtgac tgagttcggg
    15601 cgcgggtctt ccggcagatt cgcactgcgc gacagtaaga tattattgac ctgattcaac
    15661 aatggtacgg cactggcaaa gccaaactga ccaacaacgg gcgtgccgtc cggtctgcca
    15721 gtccagatcc caatgacata gcgagcgtta accccaatcg cccaggcgtc acgatagcca
    15781 tagctggtgc ccgttttcca tgccagtggg gcgacgcgcg gcaaggcact atccggcaag
    15841 ggttgcgctt catcagccat aatccggcga atgatccacg ccgcccccga cgacattaaa
    15901 ggccgttcaa gcagcggatc gtcaggctgt aagcgcaatt tgcctgcctt gccgtggcga
    15961 gcaaacgcgg tatacgctgc cgccatatct tccagttttg caccagcgcc gccgagaatg
    16021 agtgaaagat tcggcgcagc accgttgggc aaatataacg gcaatccaac attgcgtaac
    16081 tttgccgcaa accgtttcgg tccataggct tccagcacct gcacagcagg taagttcagc
    16141 gagcgcacca gcgcctcgct catgctgatc gggccatgaa aaccgctatc aaagttacct
    16201 ggtcgataat caccggtgcg ccgggggacg tcttgcagca gtgatgccgg gtggatcaag
    16261 cgttcatcca gcgccagacc ataaacaaac ggtttgagca ccgatcctgg cgatcggatc
    16321 gcattgacca tatcaacatg accaaagcgt gaatcatcgt tgagatcaac cgatcccacc
    16381 cagccgcgaa cacgcatatc ggtatgatca accacgatca tcgccagtga gctgcgcggt
    16441 ggcaaccgcc ctttccagtt ttgcgccagt tcttccagac gtcgttgaag accggcatcc
    16501 agcgtagtaa cgattttgtc gcttttgctt ttaccgagca tcatgcgcga aaacagcggt
    16561 gccagttgcg gcatttgtcg gggtgccagc cagatgggtt cttcccttga ctcttttacc
    16621 tgctcacggg accacacacc ttgcacggcc atccgttcga gcactttatt acgcgcggct
    16681 tcggcacgct ccggccaacg atccgggcgc actcggctgg gcgcttgcgg taacaccgcc
    16741 agcattgccg cctcggaata gcttaaattc gcaggcgatt ttccgagata agcccaactt
    16801 gccgcaccga tcccctgcaa cgtaccgcca aacggagcgc ggttaagata caagatcaga
    16861 atttcacgct tagacaaatg ccactccagt tgcaacgcgc gccagagctg gagaattttg
    16921 ccaccaaatg ttttggggtg aggatcaagc agacgagcaa cctgcatagt gagcgtgctg
    16981 ccaccagaaa taacccgtcc cgaagtgaga tcttgccatg ctgcgcgcgc caccgagaat
    17041 ggattcaccc ccggatgctt ccagaaccag cgatcttcat aattgatcag cgcttcaagg
    17101 taacgtggag acacatcttc gattgttacc ggataacgcc agatgccatc agcatcggcg
    17161 aagcgccaga gcggcgtacc atcctgcgcc acgaccactc gtgcgggatt gacttcatgc
    17221 agcggtagag gccagagttt atctgctccc cacgctgcaa gaaaaaggag aaatggcaca
    17281 gctgccagcg ttatccagca gccgcgtttg gttaacaagc gaagcattta cggtcggaca
    17341 atcagcagat cttcagccgc gccggtcgcc cgccattggg gaacatacat tgattccacc
    17401 atcggttgcg gtacctgata cgttcccggc gtcaccgccc gcgccagata caccagcgtt
    17461 accggttggt attcatcaac ggcaaccgcc gccacaaagc gatcgtcacg gaactcaatg
    17521 tgcttaatgc tcgcctgctg catctggttc agtaagtttt gcacttcgcc accactttgc
    17581 tccaggctgg cgctaccgtt cgccagattc tgattttcca gttccagacc cgcaggcagc
    17641 agatccacga ctaacgcatc cggcacgctg ttactggctt ttacctgcaa ccagaccagc
    17701 accagatcgc cgctacgtaa cgagtccagc gatttgctct taccatcagt accaagaata
    17761 tgacgctcga tttgcagcac attgttcgcc ggtaaaggtg cggattgcgg ataaccgctg
    17821 gcatccatac gcaaccataa cggctgatcg ccactgtttc tcacctgcaa ggtggcaagt
    17881 tgatcgctat tcagattgct gtttagcgtt ttctcgcctg tcagcggctc agctgagaaa
    17941 gaggtttgcg cctgccattt acccggtaaa tcctgaatcg tacgggcagc caggaacaac
    18001 gcgttacttt cctgcgtcga tagacagcgt tcaccaaacg cctgctgcga aagtgtgttc
    18061 agcaaagtgt actgctcatc gggtagcagt ttattttctt ccagcaagga gagcattaac
    18121 gcgttgtcgc gcagtggact accgtaatca cccagccata tccgctcatc actatttctc
    18181 ggcgttttca gcgccagcac aatcgcttct tcaccacgcg ttgcatcacc catggttttc
    18241 agcgcaatgc caagttgcag cagcggtaaa ccagaagcgg catctgcacg atgctcccag
    18301 atttcacgca gcgcacccag tggtgctttt tgctgacggg ccagcaccag cgcagcgtaa
    18361 gactgaacgg cgaatttact ggctttgaga ttatccgcgt acgggatcga catcatgccc
    18421 ggatcttgta aatagcgcag cagacgctca ttaccccggt taatggcgtc tgtcggcacg
    18481 ctgtaaccct gttcgcctgc gcggaccagg aaatccatca cgtaagccgt cagccagtac
    18541 tcttcgtcac cgtttttatc ccacagcgca aagccgccgt tatcacgttg catttgcagc
    18601 aaacgggaaa tgccgatatc gaccgatgca cggcgtttct catcactgtc gcctttgatg
    18661 cccaacgcct gcagttgggc tgcgttggta taaagtgacg ggaacaggcc gctggcggtt
    18721 tgctcaagac agccgtacgg atacgctttt aactctttga tataacgtgc aatgttcagc
    18781 ggtggtttgc cgctcaacaa caattgccct tccagcgtaa caggcgagaa gttttgcaat
    18841 ccatccgccg gaatcgccca tgtctcacca ggctgtaacg ccgtaccgta attaaccgtt
    18901 tgtgctggga acgccggacg gacgccgatt ttccactgct tatgctgatc ggcaacggtt
    18961 tcacccggta acgctaaccc gctaatggtg gcctgaattt ctccatcgcc ataacccggc
    19021 aatgctcgca ctgggataaa cagcgtagta cgcacacctg gcgctaattc aacggctgcg
    19081 ggtgaatcgc tgaccagttc aagcaaacca ctggcggtca gggcaacgtt cagtttttgc
    19141 ggtttatcgg taagattagt gatatccagc gtcagacgcg aggtatcgcc actcgccata
    19201 aagcgcggca tgttcagttc agcaatcacc ggtgcggcaa ctatcacttt gctttcgttg
    19261 ctaccgaaat catctgccgt ccaggcttgc gccatgacgc gcaattcacc gttaaaatcg
    19321 ccaatcggca gtgtaaccga gccttcgccc tgttcgttga gcgttaccgg cagcgcctgc
    19381 tgcgcgacaa tattgacgtg attgaccggc ggtttaccac cacgtttcag ctcatcacca
    19441 tcgccaccga aacgcagagc tgccagacgc ccctgacctt caataacctg accgtaaata
    19501 tcgtaaatgt ctgcgccata gcgtttctga ccaaagaacg cctgccacgg atctggcgtg
    19561 acgtagtcag taatattcag cacaccacta tcaacggcag acaccagcac attcacctgt
    19621 ttaggcttct cgccattttt agtgctggct ttaattttca cggttaatgg ttgattggga
    19681 cgcatttttg ctggtgtttc cagcgccaga tcgaggcgac ggttttcatc gccaagcggc
    19741 agatgcaaca caccaaccgc gcgttttggc gtcgcggagc gagatttatc gccaggacgt
    19801 accaccagcg tacttaaata cagatcatga cgattccagg ttttatcgac cggaatcgtc
    19861 agatccagcc cttgagccgg aacatcaatc tcttgccacc acagcggccc ttcactggac
    19921 tcgaccatcg cataaccttt acccgccgtt ggcgcggcga tatgcaactt aatggtgtcg
    19981 ccagggcgat aactggcttt atccagtttc agcgtgacac ggtcgggtcg cactgcgccg
    20041 ctaccgtcgc tgttgtcctg ccagctatag ccagcccaga aacgaacact actgaccgct
    20101 tcattcggcg ctttgacttc cagacgataa gcgccccact ctaccggaaa actgaccttg
    20161 ccggtttcgt ccgctttcag atccagagtt tgttcatttt cgatcagatc tttttgatca
    20221 aactgtgact gccagccttc atcttctgac cagttccagt agtaatcgcg gcgttcgcga
    20281 atcaggcgca cctgcaagcc cgacacggct tttttcacgc cttgtgcatc gctataaacg
    20341 atgtcaaaag cggcgttact gccttcatca acaatgggct gtttcaccgt gctgtcagtg
    20401 cgataatcgt aaaccgattt caaggcgaac tgcggacgga gccccggcaa tgcatcggca
    20461 ggccagatag cctgctcagc gcggcgcgtc accgggcgac cgcccgattc cagcaaactg
    20521 ccctggaaaa taacctgcaa tggggaatgc gtttccttcc actggctttc tgtagaaact
    20581 tcgccgcgcc ctttatcatc cagcgtcaac tgaacttcat ccagcgtgcg ggaaaggttt
    20641 tcggcagcta tatcgccgaa ttcaaaacca ggtaaggctg acacagcctc acgcagtggg
    20701 cgcaggaaaa gttgcccttg caaagtatta ccattagcag gcgcaccgta caggtagtat
    20761 cccaccacgg agaatttcac ttcatcattc ggcgtaagcg gggttttctc accggtcaga
    20821 ttcagcgcca tacgctctgg cataaaatct tcgacgtgga aatcccacat ccggtactgg
    20881 ttatcgcccg tgttggcgcg aatatgccac ataccggttg ccgcattgct atcgagtggc
    20941 caggtaaagt ggtagaggcc attctccggc tgactaacga cgctcctgag tacctgcccg
    21001 tcaggtttaa tcacgtctaa cttgatgggg tgatcgggca atgctttacc gtctgcatcg
    21061 cgcagtaaac cattgaggat taccgtttca cctgggcgat aaagatcgcg tgggccaaac
    21121 atgaaaaact gtttgctata gcctggcgcg ccagcaatgt taaattctgc taagtccagc
    21181 gccggaagtt ttaaatcgag tagcgttgtc tgaccgtctt tacgtgccag cagtaatgcc
    21241 gcatttttat cattttccag ctgcacatgc ccctgagcgt cactggttgc ctgagtcaga
    21301 gtctgccctt tctcatttaa taaagagact tcaattcctt gctgggccgc gccgttttcc
    21361 agactttggg taaagatatc cagacgattg tgataacggt gagctgaaac gccgatatca
    21421 cttaacgtaa acagcgtcgc gggattactg taatcgtaac gtccagcctg attcatcaca
    21481 gccagataca cgcccgcctg ctgaagcggt ttgatatcgc ccagcggcag caataatttt
    21541 tcacgggtgt tacgcgcagg attgagatca aaccgtccgg tgtagaccag atccgccatc
    21601 tgcagcagtt tgtctgactg ccagttcgcc agcgaattgc ggtattccca ttggctaatg
    21661 aatgctggca gagattctgg cttaacgcgg aagaagttaa catcgacatt attaacgttg
    21721 agcgccatta ccggcagccc ttcaacgact ttgccaggca gcagcgaacc acggctggca
    21781 aaaccgacgc tgggttggat gtcgcgggta gttatagttt tttcgtaatc tttactgaag
    21841 gttgcgttgt tgagtgcttt gacctccttg ccaatagtaa cgatcaaatc acgtttcggt
    21901 tcgaggtggc gtaaacgtag ctctttaaga ttatctgaca gctcccaggc accatccact
    21961 ttgccgcttt ttttatcgac gacatgaata acgcgtgaga aatcctgatc cgggtcgaga
    22021 gggatggaga acgtcagcac cagcgtggct gcaccatcaa gttggacttc agagagatcc
    22081 agcaatgtca gcaccttacc ggcactctgt tgggccagtt tttgtctctc cggcacggag
    22141 agttttgctg aactcgcgtt ttctgaagag gccgctttag taacttcaga aggcgcatct
    22201 tttttcaccg ctgttggcgc gttatcgttg ttgtcgcacc ctgccagcgc cagcattagc
    22261 atgcaggcgg ctacgcgtaa ctttttcatt tttcatccct gccacaatgg cccgttagca
    22321 acgtcgaata attattatgc gtgagaattt acgttatgta attcagtatc acgcccatac
    22381 aatccgaatt ttagtgagaa ttgtggctca gacagccaaa tcagcctctt tcgcttgtcg
    22441 cttttcacta aacatccgac aatttagcct aaccccggca aaaatggaga tgcctatgtc
    22501 cacgacatgg tttgtaggag ccgactggct cgccgaacat attgatgacc cggaaattca
    22561 gattatcgat gcccgcatgg cgtcgcctgg acaggaagat cgtaacgttg ctcaggagta
    22621 tctgaatgga catattcccg gcgcagtgtt ttttgatatc aaagcgcttt ctgatcacac
    22681 ttccccgctt ccgcacatgc tgccgcgccc ggaaacgttc gccgtggcga tgcgtgaatt
    22741 aggcgttaac caggataagc acctgattgt ctatgacgaa ggtaatcttt tctcagcccc
    22801 acgagcatgg tggatgctgc gcacctttag tgtagagaaa gtgtcgattc tggggggtgg
    22861 acttgcaggc tggcagcgcg atgatctgct gttagaagaa ggtgcagtag agctgccgga
    22921 aggagagttt aacgccgcgt ttaatcctga agccgtggtg aaagtaaccg atgtattatt
    22981 ggcaagccat gaaaatacgg cgcaaattat tgatgcccgc ccggctgcac gttttaacgc
    23041 agaagttgat gaacctcgcc caggtttacg tcgcggacat attcccggag cactgaatgt
    23101 tccgtggacg gaactggtgc gcgaaggcga actaaaaacg accgatgaac tggatgcgat
    23161 attttttggt cgcggcgtca gctacgacaa accaattatc gtcagctgcg gctctggtgt
    23221 aacggcagcc gtggttttgt tagcactcgc gacgctggat gtgccaaacg tgaaactgta
    23281 cgacggcgca tggagtgaat ggggcgcgcg ggcagattta ccggttgagc cagtgaaata
    23341 agtattttac aggcaataaa aaaccgccga atttggcggt tttttattgc tggtctggtt
    23401 cgcggccttt ccagcaggtt gtattaccgt agtaatgcaa gcgcgtctca gcggagacaa
    23461 tactcgccag taactctctt tttgtcaagc aaaagagagt tattattgtt ctgttagtat
    23521 attatccact gcggcccttt ccgccgtctc gcaagcgggc gctggcttaa ggaaaggata
    23581 ttgcgcgacc gttagagcaa gcgcgtctca gcgcttgcta tcgcggcaat atcgccagtg
    23641 gtgctgtcgt gatgcggtct tcgcatggac cgcacaatga agatacggtg cttctgtatc
    23701 gtacttattg tttctggtgc gctgttttcc caagtaaata ataaccgaag tctctccggc
    23761 gacaatttac tggtggttaa caaccttcag agcagcaagt aagcccgaat gccgcccttt
    23821 agggcggcat attttagatt atccggtttt gtttaaagtc acgcaaaaaa cctccccagc
    23881 gacgttcata gaatggcaca atatgttcgg taataaagtg gctaattcct ttttcccctt
    23941 ttttcacctg acaaatatcg attggttcat cgccaggtaa tgtatcggtc gctacacttc
    24001 ccgtcgcctg aataatttct tcgatatcac catcggcttc aatgccaata aataaattag
    24061 gctgtgcctc ttcgttctct ttaattgaac aaataaaagc acgcttcacc ggcttaatgg
    24121 ttttaaataa ggtggtgagt gaatcaatca tttgtgctgg cggctctgcg acttccgata
    24181 atatcagcga ttcaccgcct tccaggattt cctggctgct cagcggattt ccctcttcac
    24241 caatcaacaa actgatttca cgcggcataa attctttacc ggtcggcagt ttggcattaa
    24301 ggaagagcgt ttcgccaagg gtcatctcaa acaatgtgcg aacgggcatt acgacaaatg
    24361 cctgttcgtc ttcaaccgcc tgttgaagcg cttctaacga ggtgaaaaaa ggaatgacgc
    24421 tggtgccgtc ttctttttcc cagtgctgta aatcaagcgc actatcttca accacagcct
    24481 cgccctgcgc cgccgtacca ggcacccaga cggtggattc cagtagagta cggaaaaagg
    24541 ccgggcggtg cgccggttcg gttgctgctt tttccagcag gtcttcaagt tcgttttttg
    24601 tttcggacat aagaaccaca attcattcaa cgttcggggc gcaaatgcct gatgcgctac
    24661 gcttatcagg cctacaaggg attcgcaatt tgttgaattt gcagaatttg taggccggat
    24721 aaggcgttta cgccgcatcc ggcatattag tttacgccgt taacagatta gctatcgtgc
    24781 gcacaccaag tcccgtagcg cccgcagacc actgttcaac cggcgcttta cggtaagtcg
    24841 ccgagcagtc gatatgcagc cagccttgct gatagttctc aacaaagtgc gacaggaagc
    24901 ccgccgccgt gctcgcgcct gccggatacg ccgcgcttcc ggtattgttc agttcggcaa
    24961 agttagacgg cagctggctg cggtggaatt ccgccagcgg cagacgccag aatggttcgt
    25021 tctcttgtga ggcactcgcc agcaaacgac cggcaagcgc atcgtcaaaa ctgaacagcg
    25081 cgtgataatc attacccagc gcagttttcg ccgccccggt gagggtcgcc gcatcaatga
    25141 tcatttccgg tttctgcgca ctggcatcaa tcagaccatc ggcaagcacc agacgccctt
    25201 cggcatcagt gttcatcact tcaacttttt taccgttgcg ataggtgatg atatcgccca
    25261 gcttgaacgc attgccgcta atcaggttat ccgcacagca gaggaacagc ttcacgcgct
    25321 tgttcagtcc gcgcgtaatg gcaaatgcca gcgccccggt aaccgttgcc gcgccgccca
    25381 tgtccgactt catcgagtcc ataaacgcag tctgtttgat gctgtagccg ccggagtcaa
    25441 aagtgatacc tttacctacc aggcacgcgt acactggcgc ttctttatcg ccagttgggt
    25501 tgtaatccag cgccagcaat accggagaac gttctgaagc gcgtccgacg gtgtgcagcc
    25561 ccatataacc ttgctcacgc agatcttcgc ctttggtgat ccgataagtc acacgatcgc
    25621 ccgcgacgtt gctgatcaga tcaacagcac gctgtgccag ttgcgatggt cccaattctt
    25681 ctgccggtgc gttgatggtg tcacgcaccc agtcgatgat catcaggcgg ttatccagtt
    25741 cctggcgctg ggcatcgtcc agatccggcc actccacttt acgcgtgcct ttcggggctt
    25801 tgtaaccttg ccagaatgcc cagcagcgat ccgcatccca gccttcaccg cttaactgaa
    25861 catgcttgat gcccagaccg tcaatcttgc gcgccgcacg ctgaatcagc cccagatcgt
    25921 ctgccccgtt caaatgcagg gtaatgccgt cattattaat gctgtaagtt gctttttctc
    25981 cccagcgcgc gtcggcaggt tgggtagaga gggtaatctt catcgcttct gtcattttag
    26041 ttatccttct ttgtaaaagg gccgccagtt ggcagcccca ggatttttcc gctaaatgat
    26101 tcgcgttgca ggaaggcggc aagtgagtga agccccagga gcatagataa ctatgtgact
    26161 ggggtgaacg agcgcagcca acgcatctgc ggcgtgaagc atgacgcgga aattattcgg
    26221 cctcgtccag ccagactaac aaaatcgctt cgaggatttt ctcgttggat gcctgcgggt
    26281 cgtcgtcgaa atcttccaga tcgcaaatcc actgatgcat atcggtgaat cgaaccgttt
    26341 tcggatcaag atcaggatac gcatcgtaca gtgcttcgcc aatttcgcgg ctatcggtcc
    26401 acttaagtcc catactaacc tctgttaatg ctcacgcgca tggttgatag tgtaacgcgg
    26461 gatttcgact actaaatctt cgtcggtaac gcgtgcctgg cagcttaaac ggctttcggg
    26521 ctccagtccc caggctttgt ccagcatgtc gtcttcctgc tctgagcttt ctggcagcga
    26581 gtcaaaacct tcacgaacga tgcagtggca ggtggtgcaa gcacaggatt tttcacaggc
    26641 gtgttcaatc tcgataccgt tacgcagcgc tgcgtcgaga atggtttcac cgctattagc
    26701 ttccagaaca gcgccatcag ggcagaggtc ctgatgaggc aaaataacaa tctttggcat
    26761 attaaacctc gtccacggaa tggcctttca gcgcacgacg aaccgactgg tccatgcggc
    26821 gagcggcgaa atcctgggtt tgtttgtcta cgtttttaat cgcttgttcg atggcgtcaa
    26881 catcatcgcc ctgagccact tcactcaggt gagcggcagc attgtcaatg acctgacgct
    26941 ctgcggcgct taacagcgcg gcatcagcag ccagcgcgcc gtgcagactt tccagcacac
    27001 gcgccgcttc tactttttgt tctgccagca tacgggcttt tacgtcctgc tcggcatagc
    27061 tcattgaatc tttgatcatc gaagcgattt cgctatcggt cagaccgtaa gaaggtttga
    27121 cctgaataga cgcctcaacg ccggtggatt tctccatcgc cgtcacgctc aaaagaccgt
    27181 cggcatcgac ctggaacgtc acgcgaatat gcgcaccgcc agccggtagc gccggaatac
    27241 cacgcagcgc aaaacgcgcc agtgagcggc agtcctgcac cagttcgcgc tcaccctgca
    27301 ttacatggat agacatcgcc gtctgaccat ctttaaaggt ggtgaaatcc tgagcgcggg
    27361 ccaccggaat agtggtatta cgcggaatca ctttctccac caggccgccc atcgtttcga
    27421 ggcccagcga cagtgggatc acatcaagca gcagcatttc gctgtccggc ttgttaccca
    27481 ccagaatatc cgcctgaatc gccgcgccaa tagcgacgac tttatccggg tcgatggaag
    27541 tcagcggtgg acgaccgaaa aattcgccta cccgttcacg caccagcggc acgcgagtag
    27601 aaccgccaac catcaccact tccagcactt catcagcttc tacgcccgcg tctttcagcg
    27661 cacgacgaca agccagtaag gttcgtttta ccagtggcgc gatcagttca ttgaattgtt
    27721 cacggctgat ttcgccctgc cagcccgcaa cgttaacggt cacggagtcc gcatcgctca
    27781 gcgcgatttt ggctgcaatg gcggcatcca gcagttcacg ctgaacgcgg ttatcgctac
    27841 gatcaggaat gtccgcctgc tcgcgaatgt aatccgccag cagatggtcg aaatcatcgc
    27901 cgccgagcgc ggaatcaccg ccggttgcca gcacttcaaa cacgccgcga cttaagcgca
    27961 gaatggaaat atcaaacgtc ccgccaccga ggtcataaac ggcgatcacg ccttcctgac
    28021 cggaatccag cccgtaggcg atagccgcag cggtcggttc gttaagtaag cgcagaacat
    28081 gcaaccccgc cagacgcgcc gcgtctttgg tgccctgacg ctgggcatcg tcaaagtacg
    28141 ccggaacggt gataacgaca ccatccagct cgcctgccag ggcttcagtt gcccgcgccg
    28201 ccagtgcttt gaggatgtcc gcagaaacgc gcaccgggtt cagcagcccc gccgccgttt
    28261 caatcattgg caggccgttt tcgctggcct ggaattgata aggcaaatgc ggatagcgtt
    28321 gctggatatc agccagcgag cgtcccatca ggcgtttaac agaactaatg gtgttggcgg
    28381 tatcgagcgc tgcgttagta cgcgcgtcat aacccaccga atgcccttgc tgttgatagt
    28441 gaacaacaga tggcagcagg tgacggcctt catggtcggc taacgtttcg gcctgaccgc
    28501 tgcgcactgt cgctaccagc gagttggttg tgcccaggtc aataccggcc gccagacgac
    28561 gctgatgcgg cgcagcactc aaaccaggtt cactaatttg taataaggcc atgtttagct
    28621 tccagaaatt aaaaatcgag cagtttttct tcgagttgtt cggcactgct tcgcagttta
    28681 tcgagaaaac gcagcttacg cacggtatcc gccgccgcgt cccacgtctc gttgtctaac
    28741 tgttcaacca tcaactgatg gcgggtatca aacatctttt tcacacgttt aataaagctt
    28801 tccagccgcg cttcatcttt cgcctgttcg atctcgtcca gttcttcgcg cagctccagc
    28861 tgttccatca ggaacgcggt gtcgcgcaca gtatgctgct cgctggcgag atcaaaaccg
    28921 tgcaaagaaa gcaaatattc cgcgcgcatt aacggatgac gcagcgtttg ccaggcctgg
    28981 ttaatggttg cagattgctg tacggcggcg agttgttccg cctggcttcc gctggcgaat
    29041 ttatcaggat gatactgacg ttgtagatcc tgaaaacgca ggctcagtgc ctgggtatcg
    29101 agttgataac gggcaggcaa gccaaagagg gtgaagtaat ccataacatt ctcagggctg
    29161 cgatccgccg cgataacggc gaatcaggta aaacaaaccc cacgcgcagg cgaccacggt
    29221 ggggttatcg gtatgcgcat caaacgtgga agctttcgcc gcaaccacac tcatctttaa
    29281 cgttcgggtt ggtgaattta aacccttcat tcaggccttc ttttacgaag tccagctgcg
    29341 taccgtccag aaattgcagg cttttgccat cgaccacgac tttcacgcct ttgtcttcaa
    29401 acacgatgtc ttccggcgtc ggttcgtcaa caaattccag tacataagcc atacctgaac
    29461 atccggaggt tctcacgccc agacgcaggc caaacccttt gccgcggtta gccagaaagg
    29521 tatttactcg cgctgctgca ctgtcgctca gtgtaatcga cataaccaaa cctcaactct
    29581 tattttgctt cacgtttgct tttatagtcc gcaatggcgg ctttgatcgc gtcttctgcc
    29641 agaatagaac agtgaatttt caccggcggc agttcaagtt cttcagcaat atcggtgttt
    29701 ttgatcgcct gcgcttcgac gagagacttc cctttcaccc attcggtgac cagggagctg
    29761 gaagcgatag cagaaccgca gccgtaagtt ttaaaacgcg cgtcttcaat gataccttca
    29821 tcgttgactt taatctgcaa cttcatcacg tcgccacagg ccggtgcacc caccatgccg
    29881 ctgccgacgt tctcgtcgtt gttgtcaaag gaacccacgt tacgcggatt ctcgtaatgg
    29941 tcgataactt tttcgctgta agccattata aattctcctg attccgatac cgattaatga
    30001 tgagcccatt cgatgctgtt cagatccacg ccctgcttgt acatttccca cagcggagaa
    30061 aggtcacgca gacgaccgat ggatttacga actaactcga tggtgtagtc gatctcttct
    30121 tcagtagtaa aacgacctaa agagaaacgg atagagctat gtgccagctc gtcgttcagc
    30181 cccagcgcgc gcagcacgta ggacggttcg aggcttgctg acgtacaggc ggaacctgaa
    30241 gaaactgcga ggtctttcag cgccataatc agtgactcac cttcaacgta gttgaagctg
    30301 acgttgagaa tgttcggcgc accgtgttcc aggtcaccgt tcaggtaaac ttcttcgata
    30361 tctttgatgc cgttccacag acggttacgc aggccgcgca gacgttccat ctcggtcgcc
    30421 atctcttctt ttgcgatgcg ataggcctcg cccattccga cgatctggtg aacaggcaga
    30481 gtgccggaac gcataccgcg ctcgtgaccg ccgccgtgca tttgcgcttc gatgcgtacg
    30541 cgcggtttac gacgtacata cagcgcaccg atacctttcg ggccatagat tttgtgaccg
    30601 gagaaagaca tcaggtcaac tttcaactgg ctcaggtcga taggcagttt gcccacgctc
    30661 tgggttgcat caacgtgata gataatgcca cgagcacggc acatttcgcc gatagccgcg
    30721 atatcctgca ccacgccgat ttcgttattt acgtgcatga tggaaacaag gatggtgtcg
    30781 tcacgcatcg ctgcttcaag ttctttcagg tcgataatgc cgttacgctg cggtgccagg
    30841 taggtgactt caaaaccttc gcgctccagc tgacggcagg tatccagtac cgctttgtgt
    30901 tcggttttgc tagtgatgat gtgcttgcct tttttctgat aaaagttggc tgcacctttg
    30961 atcgccaggt tgtcagattc ggttgcacca gaggtaaaga cgatttcacg cggatcagcg
    31021 ccgaccagat cggcaatctg attacgggcg atatctaccg cttcttcagc ctgccagccg
    31081 aaacggtgag aacgagaggc cgggttacca aaggttccgt ccatcgtcat gaactgcatc
    31141 attttctcgg caacacgcgg gtccaccggc gtggttgcgg agtagtcgag ataaatcggt
    31201 aatttcattg ctctataaac tccgtacatc actcaatgca aggaatcagg ctaccggctg
    31261 gatgtacgac cgtgtttacg gagtatttag cactccggcc tgattctgaa ttctttttat
    31321 taagcgcgta acttaacgtc gatcgcgtct tgtgtgcggg tgcgtggcgc gtcgtgagta
    31381 tgctgacgac cagacacatc cagcacttcc tggttattaa ccagttcgcc taaagtaatg
    31441 ttgttgagaa aaccggtgag acggtcgctc aaatcacgcc acagcgcgtg ggtcaggcat
    31501 ttatcgccgc cctggcagcc gcctttaccc tgacaacggg tggcatctac agattcgtca
    31561 acggcgctaa tcacttcgcc aacggcgatg ctgctggcat ctttgcctaa cagataacca
    31621 ccgcctggtc cacgtacgct ggaaaccaga ccatttttac gcagacggga aaacagttgt
    31681 tccagataag aaagggaaat tccctgacgt tcggaaatat cagccaacgg taccgggccc
    31741 gcttcagagt tgagcgcaac gtcaagcatt gcggtcacgg catagcgccc tttagatgtc
    31801 agtctcatgt cttacttcac ctcaaactcg cccctgcccg gggtttttta ttgtaaaagt
    31861 gggggtattg aatagcaggg tcaagtctga cattcccgag taaattggtc aactatttac
    31921 ttgactgatt tagtcgggta tttaaccttc agtgccattt ttttatcgtg gcgtttgtac
    31981 ctgttgtcgg atgcggtgtg aacaccttat ccgacctacg gttctgtaca ttgtaggcct
    32041 gataagacgc gttaagcgtc gcatcaggca actactgtta ttcggccttg ttacctttat
    32101 tctgctgctc aatagaagcc agaatcccgc gcaggatatt caattcctgg ctttccgggc
    32161 gcgcacgggt aaacagacgg cgcaatttat tcatcacctg ccccggatgg ttttcacgga
    32221 taaaaccggt tgccagcagc gtttgttcca gatgaccata aaaacgctcc agatcatcga
    32281 ccagcggata cggcgtctct tcatgctcga cctgctcgcc gttttcctga gttgccagcc
    32341 aggccatgcg cacttcatag gcaataacct gaaccgccat cgccaggttc agcgagctgt
    32401 attccgggtt agccgcaatc gcgacatgat aatggcattt ctgcaactct tcattggtca
    32461 agccgacgcg ctcgcgacca aacaccagcg ccaccggggt atttgccgct tcagcgacgc
    32521 ttttcaggcc gcattcgcgc gggtcgagca tcggccatgg cagcgtgcgg gaacgtgcgc
    32581 tggtgcccac caccaagcta caaccggcta acgcttcgtc gagcgtatcg acgatgtgag
    32641 cattaccaat cacatcgctg gcccctgctg ccagggcaat cgcctgggag tcgggtttca
    32701 ccagtggatt aaccagccac agattggtta atcccattgt tttcatggca cgggcaacag
    32761 aacccatatt gccggtgtgt gacgtctcca ccagcacaat tcgaatattt tgcagcattg
    32821 tctttcttca tctaaagatt attcacgcat cttatcataa aacgaagaca gatgccgatc
    32881 tcgctgctat actctgcgcc gttttcccgt tctttaacat ccagtgagag agaccgatgc
    32941 atccgatgct gaacatcgcc gtgcgcgcag cgcgcaaggc gggtaattta attgccaaaa
    33001 actatgaaac cccggacgct gtagaagcga gccagaaagg cagtaacgat ttcgtgacca
    33061 acgtagataa agctgccgaa gcggtgatta tcgacacgat tcgtaaatct tacccacagc
    33121 acaccatcat caccgaagaa agcggtgaac ttgaaggtac tgatcaggat gttcaatggg
    33181 ttatcgatcc actggatggt actaccaact ttatcaaacg tctgccgcac ttcgcggtat
    33241 ctatcgccgt tcgtatcaaa ggccgcaccg aagttgctgt ggtatacgat cctatgcgta
    33301 acgaactgtt caccgccact cgcggtcagg gcgcacagct gaacggctac cgtctgcgcg
    33361 gtagcaccgc tcgcgatctc gacggtacca ttctggcgac cggcttcccg ttcaaagcaa
    33421 aacagtacgc cactgcctac atcaacatcg tcggcaaact gttcaacgaa tgtgcagact
    33481 tccgtcgtac cggttctgcg gcgctggatc tggcttacgt cgctgcgggt cgtgttgacg
    33541 gtttctttga aatcggtctg cgtccgtggg atttcgcggc aggcgagctg ctggttcgtg
    33601 aagcgggcgg catcgtcagc gacttcaccg gtggtcataa ctatatgctg accggtaaca
    33661 tcgttgctgg taacccgcgt gttgtgaaag ccatgctggc gaacatgcgt gacgagttaa
    33721 gcgacgctct gaagcgttaa tgactcaggc gggtgatgtc actcacccgc cctcgccttt
    33781 caggcgctat tccgaaatac ttcctcaccg ctttactttc tttcgtcact ctcccaccat
    33841 ctttccccga ttaatggatg ataaagaagt cacaaggaaa ggttatggcg ctgccagtga
    33901 acaaacgcgt tctcaaaatt ctgtttattc tctttgttgt tgccttctgc gtttatttag
    33961 tgccgcgcgt tgccatcaac ttcttctatt atcctgacga taaaatttac ggtcccgacc
    34021 cctggtcggc ggaatccgtc gaatttacgg ctaaggacgg tactcgtctg caaggctggt
    34081 ttattccttc ttcgacgggc cctgctgaca atgccatcgt aaccatcatt catgctcacg
    34141 gcaatgccgg aaatatgtcc gcccactggc cgctggtcag ttggttaccc gagcgtaatt
    34201 tcaacgtttt tatgtttgat tatcgcgggt ttggtaaatc aaaaggcacg ccgtcccagg
    34261 ccggattgct ggacgatacg caaagtgcca tcaatgtggt gcgccatcgc agtgatgtaa
    34321 acccacaacg actggtgctg ttcgggcaga gtattggcgg ggcgaatatt cttgctgtta
    34381 ttggtcagga tgatcgtgaa ggcatacgtg cggtgatcct cgactccaca tttgcctctt
    34441 atgcaaccat cgccaatcag atgatccccg gcagtggcta cttacttgat gagagttaca
    34501 gcggcgaaaa ttatatcgcc agcgtcagcc cgatcccgct tttactcatt cacggtaaag
    34561 ctgatcacgt tatcccatgg cagcacagcg aaaagttgta tagcctggca aaagagacaa
    34621 aacggttgat cctaatcccg gatggcgaac acattgatgc tttttccgat cgtcacggcg
    34681 atgtttatcg cgaacagatg gtggacttta tccttagcgc gttgaatccg cagaactaac
    34741 ccatgatcgc tagcacgata atcattcaca aaaccacctt aagacatgct aatccactgg
    34801 tcagaacagt ttaagatgag aaaaattctg tgacgcttgc caacatttct gatgattagc
    34861 attcccttcg ccatgtccct gagcaaactt tagctattct tatcaattat gcttatggga
    34921 gatctacaga tgatgcctac gcttgctcca ccatctgtcc tttcggctcc ccagcgccgc
    34981 tgccagatct tgctgacgct ctttcagccg gggttgaccg ccaccatggc aaccttcagc
    35041 gagcttaatg gtgtggatga tgatattgcc agtcttgata tcagcgaaac aggacgggag
    35101 atcctgcgct atcatcaact cacactgacg actggttatg acggtagcta ccgggttgaa
    35161 ggtacagtgc ttaaccaacg tttgtgttta tttcactggc tacgacgtgg tttccgtctg
    35221 tgtccgtcat ttattaccag ccaattcacc cccgccctga agagtgaact gaagcggcgc
    35281 ggaattgcgc gtaactttta cgacgatacc aatctacaag cgttagtgaa tctctgctcc
    35341 cgacggctgc aaaaacgctt tgaaacgcgc gatattcatt tcctgtgtct gtatctgcaa
    35401 tattgtttgc tgcaacacca cgctggaatt acgcctcagt ttaatccgct ccaacgtcgc
    35461 tgggcggaat cctgccttga atttcaggta gcgcaggaaa ttggacgcca ctggcagcgt
    35521 cgggcgctcc agcctgtacc gcctgatgag ccactgttta tggcattact tttttccatg
    35581 ttgcgggttc ccgatccatt gcgtgatgcg catcagcgag acagacaatt gcgtcagtct
    35641 atcaaacgtc tggtaaacca ttttcgtgag ctgggaaatg ttcgttttta tgatgaacag
    35701 gggttatgcg atcagcttta tacccacctc gcccaggcgt taaatcgcag tttgtttgcc
    35761 atcggtattg ataataccct gccagaagag ttcgccagac tgtacccacg cctggtgcgc
    35821 accacccgcg cggcgctggc cggatttgaa agtgaatacg gcgtccatct ttctgatgag
    35881 gaaagtggtc tggtcgcagt gattttcggt gcctggctaa tgcaggaaaa cgatctgcat
    35941 gaaaaacaga ttattcttct taccgggaat gatagcgagc gagaagcgca gattgagcag
    36001 cagttacgcg aactaacgtt actgccgctc aacattaaac atatgtcggt aaaggcattt
    36061 ttgcagacag gcgctccgcg cggcgcggcg cggcgcggcg cggcactgat tattgcgcct
    36121 tataccatgc cgttaccgct cttttcacca ccgctgatct atacggacct gacactgaca
    36181 acacatcaac aggagcagat ccgcaaaatg ctcgaatcag catgagggaa caactttcgg
    36241 gcgcaaaaac attgccggaa gcgccaccag cgccattacc cagaacacgc cgtggcccag
    36301 atattgatac aggaaaccgg tgaaaacggt catgatagct atactgccgc ccatcgcgac
    36361 ggcagagtaa accgcctgta aacggatgac ttcgctaccc tggcgagcgg caatatagcg
    36421 catggcggcc aggtggcaga ccgtgaaggt gccgcaatgc agaatttgca ccactatcaa
    36481 ccacggcaac gccgtagttg ctcccataat gccccagcgc actacgccgc aaatcgccga
    36541 gatcaacagc atatcgcgtg cactacaacg gcggaaaagt ttattactca gcgcaaagat
    36601 aatgacttcc gccaccacgc ccagcgacca caaatacccc accgccgagg ccgagtagcc
    36661 agctgcctgc cagtaaatgg cgctaaaacc gtaataggcc gcatgtgccc cctgcaataa
    36721 acaaacgcag gccagaaagc gccagttctg aagaaccagc gccaaccacg ctgaccaacc
    36781 ggtgctctcc tgctggcggc ttgccccttg tggctgaatc gtcggacgga tgagaaagcc
    36841 gagcagcatg gatgccacgc ccaatgttaa cagcgcgagg atcacctgat aatcaaacat
    36901 agtgaccagt ttgcccgtca gcgccgagcc aatgacaaac gccaccgagc cccacagtcg
    36961 cactttgccg taatcaagcg ggaactgctt ttgccacgta ttcgccagtg catcggtcaa
    37021 cggtaccagc ggtgagaaaa agaggttaaa gccaatcatc accagcatca gccacgctac
    37081 gtgcgccccc gcccagaagg cgacagcaaa gagaagtgtc atcattgcca gcacgcgcaa
    37141 ggcggaaatc aggcgagaag gatcgctgac gcggggcgcg atgagcaaac tcccgagaaa
    37201 acgggcaacc agacctgccc ccaataacag gccgatggtt tctggcgtta aaccaatccc
    37261 tttaagccag acgctccaga aaggtagaaa aatgccgtaa ctaaaaaagt atgtgaaata
    37321 gccgagcgcc aaccagcgcg tggattgcaa aaccatgagt ccctcccgtc aggaggcgtt
    37381 agtctggggt taatcgaatg ttggtgcaag ttgaaaaata agaatattcg agcctgcttc
    37441 ccgatgtctg taacgccagt tcacaagcac taaaaaactg cgatccgcga cgcatgttgc
    37501 aaaaataatg cgtaattatg ccgttacgct tgccaaacgt tcctgcacaa tggcgatgaa
    37561 atcacgtaat gccggcttca tctccccttt cttccacgcc atcagtaaag caatggaagg
    37621 cacatttccg gcaatgggac gaaaaacaac ctgtccggta ttaaaattat tcatataacc
    37681 gggtatcaaa gtgacgccca gccccatgcc caccagattc atggtcacca gaatattcgt
    37741 tgccacctgg acgatatttg gctggctgtt ttcttgcgca aaccacgctt taacgatcgg
    37801 cgcaagcgaa ccggaatacg ccggatcggt actgacgaaa ttcacgccat ccagttgcgc
    37861 ggcggtgatc tctttttcat gtgctaaagg gtgatcaacc ggtaacacaa ccactaatgg
    37921 ttcgtcaaaa agctccagat aatcaatctc cgggctataa acaggatgg
//
LOCUS       DADMHM010000014        37721 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.014, whole genome shotgun sequence.
ACCESSION   DADMHM010000014 DADMHM010000000
VERSION     DADMHM010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 37721)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37721)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37721
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.014"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(1..1147)
                     /locus_tag="JN125_000627"
                     /pseudo
     CDS             complement(1..1147)
                     /locus_tag="JN125_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016234052.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
     gene            complement(1270..1722)
                     /locus_tag="JN125_000628"
     CDS             complement(1270..1722)
                     /locus_tag="JN125_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313256.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF386 domain-containing protein"
                     /protein_id="HAY8870501.1"
                     /translation="MIIGNIHNLQPWLPQELRQAIEHIKAHVTAETPKGKHDIEGNRL
                     FYLISEDMTEPHEARRAEYHARYLDIQIVLKGQEGMTFSTQPAGTPDTDWLADKDIAF
                     LPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPARVRKAVVKMLMA"
     gene            complement(1867..2460)
                     /locus_tag="JN125_000629"
     CDS             complement(1867..2460)
                     /locus_tag="JN125_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313255.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HAY8870502.1"
                     /translation="MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTD
                     YLGINPPSLYAAFGNKAGLFSRVLNEYVGTEAIPLADILRDDRPVGECLAEVLKEAAR
                     RYSQNGGCAGCMVLEGIHSHDPQARDIAVQYYHAAETTIYDYIARRHPQSAQCVTDFM
                     STVMSGLSAKAREGHSIEQLCATAALAGEAIKTILKE"
     gene            2531..3244
                     /gene="bdcA"
                     /locus_tag="JN125_000630"
     CDS             2531..3244
                     /gene="bdcA"
                     /locus_tag="JN125_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAY8870503.1"
                     /translation="MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAA
                     ERLAQETGATAVFTDSADKDAVIDVVRKSGALDILVVNAGIGVFGDALELNADDIDRL
                     FKINIHAPYHASVEAVRQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGL
                     ARDFGPRGITINVVQPGPIDTDANPANGPMRDMSHSFMAIKRHGQPEEVAGMVAWLAG
                     PEASFVTDAMHTIDGAFGA"
     gene            3375..3770
                     /locus_tag="JN125_000631"
     CDS             3375..3770
                     /locus_tag="JN125_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HAY8870504.1"
                     /translation="MVERTAVFPAGRHSLYAEHRYSAAIRSGDLLFVSGQVGSREDGT
                     PEPDFQQQVRLAFDNLHATLAAAGCTFDDIIDVTSFHTDPEKQFEDIMTVKNEIFSAP
                     PYPTWTAVGVTWLAGFDFEIKVIARIPEL"
     gene            4050..4184
                     /gene="pyrL"
                     /locus_tag="JN125_000632"
     CDS             4050..4184
                     /gene="pyrL"
                     /locus_tag="JN125_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyr operon leader peptide"
                     /protein_id="HAY8870505.1"
                     /translation="MVQCVRHFVLPRLKKDAGLPFFFPLITHSQPLNRGAFFCPGVRR
                     "
     gene            4188..5123
                     /gene="pyrB"
                     /locus_tag="JN125_000633"
     CDS             4188..5123
                     /gene="pyrB"
                     /locus_tag="JN125_000633"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase"
                     /protein_id="HAY8870506.1"
                     /translation="MANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKV
                     IASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDA
                     IVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAM
                     VGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEE
                     VMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIAT
                     DVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL"
     gene            5136..5597
                     /gene="pyrI"
                     /locus_tag="JN125_000634"
     CDS             5136..5597
                     /gene="pyrI"
                     /locus_tag="JN125_000634"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000148566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase regulatory
                     subunit"
                     /protein_id="HAY8870507.1"
                     /translation="MTHDNKLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITI
                     GLNLPSGEMGRKDLIKIENTFLSEDQVDQLALYAPQATVNRIDNYEVVGKSRPSLPER
                     IDNVLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEFSHNVVLAN"
     gene            5670..6056
                     /gene="ridA"
                     /locus_tag="JN125_000635"
     CDS             5670..6056
                     /gene="ridA"
                     /locus_tag="JN125_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418664.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminobutanoate/2-iminopropanoate deaminase"
                     /protein_id="HAY8870508.1"
                     /translation="MSKTIATENAPAAIGPYVQGVDLGNMIITSGQIPVNPKTGEVPA
                     DVAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATF
                     PARSCVEVARLPKDVKIEIEAIAIRR"
     gene            complement(6262..8958)
                     /gene="mgtA"
                     /locus_tag="JN125_000636"
     CDS             complement(6262..8958)
                     /gene="mgtA"
                     /locus_tag="JN125_000636"
                     /EC_number="7.2.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium-translocating P-type ATPase"
                     /protein_id="HAY8870509.1"
                     /translation="MFKEIFTRLIRHLPSRLVHRDPLPGAQQTVNTVVPPSLSAHCLK
                     MAVMPEEELWKTFDTHPEGLNQAEVESAREQHGENKLPAQQLSPWWVHLWVCYRNPFN
                     ILLTILGAISYATEDLFAAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVL
                     RVINDKGENGWLEIPIDQLVPGDIIKLAAGDMIPADLRILQARDLFVAQASLTGESLP
                     VEKAATTRQPEHSNPLECDTLCFMGTTVVSGTAQAMVIATGANTWFGQLAGRVSEQES
                     EPNAFQQGISRVSMLLIRFMLVMAPVVLLINGYTKGDWWEAALFALSVAVGLTPEMLP
                     MIVTSTLARGAVKLSKQKVIVKHLDAIQNFGAMDILCTDKTGTLTQDKIVLENHTDIS
                     GKTSERVLHSAWLNSHYQTGLKNLLDTAVLEGTDEESARSLASRWQKIDEIPFDFERR
                     RMSVVVAENTEHHQLVCKGALQEILNVCSQVRHNGEIVPLDDIMLRKIKRVTDTLNRQ
                     GLRVVAVATKYLPAREGDYQRADESDLILEGYIAFLDPPKETTAPALKALKASGITVK
                     ILTGDSELVAAKVCHEVGLDAGEVVIGSDIETLSDDELANLAQRTTLFARLTPMHKER
                     IVTLLKREGHVVGFMGDGINDAPALRAADIGISVDGAVDIAREAADIILLEKSLMVLE
                     EGVIEGRRTFANMLKYIKMTASSNFGNVFSVLVASAFLPFLPMLPLHLLIQNLLYDVS
                     QVAIPFDNVDDEQIQKPQRWNPADLGRFMIFFGPISSIFDILTFCLMWWVFHANTPET
                     QTLFQSGWFVVGLLSQTLIVHMIRTRRVPFIQSCASWPLMIMTVIVMIVGIALPFSPL
                     ASYLQLQALPLSYFPWLVAILAGYMTLTQLVKGFYSRRYGWQ"
     gene            complement(9099..9152)
                     /gene="mgtL"
                     /locus_tag="JN125_000637"
     CDS             complement(9099..9152)
                     /gene="mgtL"
                     /locus_tag="JN125_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_003933616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mgtA regulatory leader peptide MgtL"
                     /protein_id="HAY8870510.1"
                     /translation="MEPDPTPLPRQRLKLFR"
     gene            9337..10302
                     /gene="treR"
                     /locus_tag="JN125_000638"
     CDS             9337..10302
                     /gene="treR"
                     /locus_tag="JN125_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001181347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator TreR"
                     /protein_id="HAY8870511.1"
                     /translation="MQNRLTIKDIARLSGVGKSTVSRVLNNESGVSQRTRERVEAVMN
                     QHGFSPSRSARAMRGQSDKVVAIIVTRLDSLSENLAVQTMLPEFYEQGYDPIMMESQF
                     SPQLVAEHLGVLKRRNIDGVVLFGFTGITEEMLAHWQSSLVLLARDAKGFASVCYDDE
                     GAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAM
                     KQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLIKFLHPE
                     IVTVDPGYAEAGRQAACQLIAQVTGRSEPQQIIIPATLSRSFPER"
     gene            10403..11824
                     /gene="treB"
                     /locus_tag="JN125_000639"
     CDS             10403..11824
                     /gene="treB"
                     /locus_tag="JN125_000639"
                     /EC_number="2.7.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS trehalose transporter subunit IIBC"
                     /protein_id="HAY8870512.1"
                     /translation="MMSKINQTDIDRLIELVGGRGNIATVSHCITRLRFVLNQPANAR
                     PKEIEQLPMVKGCFTNAGQFQVVIGTNVGDYYQALIASTGQAQVDKEQVKKAARQNMK
                     WHEQLISHFAETFFPLLPALISGGLILGFRNVIGDLPMSNGQTLAQMYPSLQTIYDFL
                     WLIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQLPEVWDF
                     GMFSIAKVGYQAQVIPALLAGLALGVIETRLKRIVPDYLYLVVVPVCSLILAVFLAHA
                     LIGPFGRMIGDGVAFAVHHLMTGSFAPIGAALFGFLYAPLVITGVHQTTLAIDLQMIQ
                     SMGGTPVWPLIALSNIAQGSAVIGIIISSRKHNEREISVPAAISAWLGVTEPAMYGIN
                     LKYRFPMLCAMIGSGLAGLLCGLNGVMANGIGVGGLPGILSIQPNYWQVFALAMAIAI
                     IIPIVLTSFIYQRKYRLGTLDIV"
     gene            11874..13529
                     /gene="treC"
                     /locus_tag="JN125_000640"
     CDS             11874..13529
                     /gene="treC"
                     /locus_tag="JN125_000640"
                     /EC_number="3.2.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709962.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-phosphotrehalase"
                     /protein_id="HAY8870513.1"
                     /translation="MTNPPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVIQRLDYLHK
                     LGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVTQAKSRGIRIILDMV
                     FNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYY
                     LHLFAPEQADLNWENPAVRAVLKKVCEFWADRGVDGLRLDVVNLISKDPRFPDDLDGD
                     GRRFYTDGPRAHEFLHEMNRDVFTPRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFN
                     FHHLKVDYPGGEKWTLAKPDFVALKTLFRHWQQGMHNVAWNALFWCNHDQPRIVSRFG
                     DEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELR
                     NDGRDADELLAILASKSRDNSRTPMQWSNGDNAGFTAGEPWIGLGDNYQQINVEAALA
                     DDSSVFYTYQKLIALRKQEAILTWGNYQDLLPNSPVLWCYRREWKGQTLLVIANLSRE
                     IQPWQPGQMRGNWQLVMHNYEEASPQPCAMNLRPFEAVWWLQK"
     gene            13923..16061
                     /gene="nrdD"
                     /locus_tag="JN125_000641"
     CDS             13923..16061
                     /gene="nrdD"
                     /locus_tag="JN125_000641"
                     /EC_number="1.17.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004128226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HAY8870514.1"
                     /translation="MTPHVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAA
                     VVSEQMQGRNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEI
                     RGLVEQTNASLLNENANKDSKVIPTQRDLLAGIVAKHYARQHLLPRDVVQAHERGDIH
                     YHDLDYSPFFPMFNCMLIDLKGMLTQGFKMGNAEIEPPKSISTATAVTAQIIAQVASH
                     IYGGTTINRIDEVLAPFVTASYNKHRKTAEEWNIPDAEGYANSRTIKECYDAFQSLEY
                     EVNTLHTANGQTPFVTFGFGLGTSWESRLIQESILRNRIAGLGKNRKTAVFPKLVFVI
                     RDGLNHKKGDPNYDIKQLALECASKRMYPDILNYDQVVKVTGSFKTPMGCRSFLGVWE
                     NENGEQIHDGRNNLGVISLNLPRIALEAKGDEATFWKLLDERLVLARKALMTRIARLE
                     GVKARVAPILYMEGACGVRLNADDDVSEIFKNGRASLSLGYIGIHETINALFGGEHVY
                     DNEQLRAKGIAIVERLRQAVDQWKEETGYGFSLYSTPSENLCDRFCRLDTAEFGVVPG
                     VTDKGYYTNSFHLDVEKKVNPYDKIDFEAPYPPLANGGFICYGEYPNIQHNLKALEDV
                     WDYSYQHVPYYGTNTPIDECYECGFTGEFECTSKGFTCPKCGNHDASRVSVTRRVCGY
                     LGSPDARPFNAGKQEEVKRRVKHLGNGQIG"
     gene            16251..16715
                     /gene="nrdG"
                     /locus_tag="JN125_000642"
     CDS             16251..16715
                     /gene="nrdG"
                     /locus_tag="JN125_000642"
                     /EC_number="1.97.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate
                     reductase-activating protein"
                     /protein_id="HAY8870515.1"
                     /translation="MNYHQYYPVDIVNGPGTRCTLFVSGCVHECPGCYNKSTWRVNSG
                     QPFTKAMEDQIINDLNDTRIKRQGISLSGGDPLHPQNVPDILKLVQRIRAECPGKDIW
                     VWTGYKLDELNAAQMQVVDLINVLVDGKFVQDLKDPSLIWRGSSNQVVHHLR"
     gene            complement(16760..17146)
                     /gene="cybC"
                     /locus_tag="JN125_000643"
     CDS             complement(16760..17146)
                     /gene="cybC"
                     /locus_tag="JN125_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313240.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b562"
                     /protein_id="HAY8870516.1"
                     /translation="MRKSLLAILAVSSLVFSSASFAADLEDNMETLNDNLKVVEKADN
                     AAQVKDALTKMRAAALDAQKATPPKLEGKSPDSPEMKDFRHGFDILVGQIDDALKLAN
                     EGKVKEAQAAAEQLKTTRNAYHQKYR"
     gene            complement(17330..18682)
                     /gene="pmbA"
                     /locus_tag="JN125_000644"
     CDS             complement(17330..18682)
                     /gene="pmbA"
                     /locus_tag="JN125_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease PmbA"
                     /protein_id="HAY8870517.1"
                     /translation="MALAMKVISQVEAQRKILEEAVSTALELASGKSDGAEVAVSKTT
                     GISVSTRYGEVENVEFNSDGALGITVYHQNRKGSASSTDLSPQAIARTVQAALDIARY
                     TSPDPCAGVADKELLAFDAPDLDLFHPAEVSPDEAIELAARAEQAALQADKRITNTEG
                     GSFNSHYGVKVFGNSHGMLQGYCSTRHSLSSCVIAEENGDMERDYAYTIGRAMSDLQT
                     PEWVGADCARRTLSRLSPRKLSTMKAPVIFANEVATGLFGHLVGAIAGGSVYRKSTFL
                     LDSLGKQILPDWLTIEEHPHLLKGLASTPFDSEGVRTERRDIIKDGILTQWLLTSYSA
                     RKLGLKSTGHAGGIHNWRIAGQGLSFEQMLKEMGTGLVVTELMGQGVSAITGDYSRGA
                     AGFWVENGEIQYPVSEITIAGNLKDMWRNIVTVGNDIETRSNIQCGSVLLPEMKIAGQ
                     "
     gene            18776..19327
                     /locus_tag="JN125_000645"
     CDS             18776..19327
                     /locus_tag="JN125_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated protein"
                     /protein_id="HAY8870518.1"
                     /translation="MTKQPEDWLDDVPGDDIEDEDDEIIWVSKSEIKRDAEELKRLGA
                     EIVDLGKNALDKIPLDADLRAAIELAQRIKMEGRRRQLQLIGKMLRQRDVEPIRQALD
                     KLKNRHNQQVVLFHKLENLRDRLIDQGDDAIAEVLNLWPDADRQQLRTLIRNAKKEKE
                     GNKPPKSARQIFQYLRELAENEE"
     gene            complement(19410..20783)
                     /gene="mpl"
                     /locus_tag="JN125_000646"
     CDS             complement(19410..20783)
                     /gene="mpl"
                     /locus_tag="JN125_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-
                     meso-diaminopimelate ligase"
                     /protein_id="HAY8870519.1"
                     /translation="MRIHILGICGTFMGGLAMLARQLGHEVTGSDANVYPPMSTLLEK
                     QGIELIQGYDASQLDPQPDLVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRD
                     RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEAD
                     EYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRII
                     WPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSLV
                     GEHNMHNGLMAIAAARHVGVAPADTANALGSFINARRRLELRGEANGVTVYDDFAHHP
                     TAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGRADEVFLLQPAHI
                     PWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNGGFGGIHQKLLDGLA
                     KKAEAAQ"
     gene            20959..21957
                     /gene="fbp"
                     /locus_tag="JN125_000647"
     CDS             20959..21957
                     /gene="fbp"
                     /locus_tag="JN125_000647"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016233757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HAY8870520.1"
                     /translation="MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAG
                     LVDILGASGAENVQGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEH
                     AKYVVLMDPLDGSSNIDVNVSVGTIFSIYRRVTPVGTPVTEEDFLQPGNKQVAAGYVV
                     YGSSTMLVYTTGCGVHAFTYDPSLGVFCLCQERMRFPEKGKTYSINEGNYIKFPNGVK
                     KYIKFCQEEDKSTNRPYTSRYIGSLVADFHRNLLKGGIYLYPSTASHPDGKLRLLYEC
                     NPMAFLAEQAGGKASDGKERILDIIPETLHQRRSFFVGNDHMVEDVERFIREFPDA"
     gene            complement(21990..22982)
                     /gene="yjfF"
                     /locus_tag="JN125_000648"
     CDS             complement(21990..22982)
                     /gene="yjfF"
                     /locus_tag="JN125_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418652.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease YjfF"
                     /protein_id="HAY8870521.1"
                     /translation="MIKRNLPLMITIGVFVLGYFYCLTQFPGFASTRVICNILTDNAF
                     LGIIAVGMTFVILSGGIDLSVGSVIAFTGVFLAKVVGDFGLSPLLAFPLVLVMGCAFG
                     AFMGLLIDALKIPAFIITLAGMFFLRGVSYLVSEESIPINHPIYDTLSSLAWKIPGGG
                     HLSAMGLLMLVVVIGIFLAHRTRFGNQVYAIGGNATSANLMGISTRSTTIRIYMLSTG
                     LATLAGIVFSIYTQAGYALAGVGVELDAIASVVIGGTLLSGGVGTVLGTLFGVAIQGL
                     IQTYINFDGTLSSWWTKIAIGILLFIFIALQRGLTVLWENRQSSPVTRVNIAQR"
     gene            complement(22969..23991)
                     /locus_tag="JN125_000649"
     CDS             complement(22969..23991)
                     /locus_tag="JN125_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313234.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAY8870522.1"
                     /translation="MPQSLPDTTTPKRRFRWPTGMPQLVALLLVLLVDSLVAPHFWQV
                     VLQDGRLFGSPIDILNRAAPVALLAIGMTLVIATGGIDLSVGAVMAIAGATTAAMTVA
                     EVSLPIVLLSALGTGILAGLWNGILVAILKIQPFVATLILMVAGRGVAQLITSGQIVT
                     FNSPDLSWFGSGSLLFLPTAVIIAVLTLLLFWLLTRKTALGMFIEAVGINIRAAKNAG
                     VNTRIIVMLTYVLSGLCAAIAGIIVAADIRGADANNAGLWLELDAILAVVIGGGSLMG
                     GRFNLLLSVVGALIIQGMNTGILLSGFPPEMNQVVKAVVVLCVLIVQSQRFISLIKGV
                     RSRDKT"
     gene            complement(24005..25507)
                     /locus_tag="JN125_000650"
                     /pseudo
     CDS             complement(24005..25507)
                     /locus_tag="JN125_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026286.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
     gene            complement(25647..26603)
                     /gene="ytfQ"
                     /locus_tag="JN125_000651"
     CDS             complement(25647..26603)
                     /gene="ytfQ"
                     /locus_tag="JN125_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactofuranose ABC transporter
                     substrate-binding protein YtfQ"
                     /protein_id="HAY8870523.1"
                     /translation="MWKRLLVVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNV
                     AKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKD
                     AEIPVFLLDRSIDVKDKSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVG
                     ASVAIDRKKGFAEAIKNAPNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYA
                     HNDDMVIGAIQAIKEAGLKPGKDILTGSIDGVPDIYKAMIDGEANASVELTPNMAGPA
                     FDALEKYKKDGTMPEKLTLTKSTLYLPDTAKEELEKKKNMGY"
     gene            26913..27443
                     /gene="ppa"
                     /locus_tag="JN125_000652"
     CDS             26913..27443
                     /gene="ppa"
                     /locus_tag="JN125_000652"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001739810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HAY8870524.1"
                     /translation="MSLLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDR
                     FMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDEAGE
                     DAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAE
                     AAKAEIVASFERAKNK"
     gene            complement(27823..28164)
                     /locus_tag="JN125_000653"
     CDS             complement(27823..28164)
                     /locus_tag="JN125_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamylcyclotransferase"
                     /protein_id="HAY8870525.1"
                     /translation="MRIFVYGSLRHKQGNSHWMTNAQLLGDFSIDNYQLYSLGHYPGA
                     VPGNGTVHGEVYRIDNATLAELDALRTRGGEYARQLIQTPYGSAWMYVYQRPVEGLKL
                     IESGDWLDRDK"
     gene            complement(28167..31946)
                     /gene="tamB"
                     /locus_tag="JN125_000654"
     CDS             complement(28167..31946)
                     /gene="tamB"
                     /locus_tag="JN125_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter assembly complex protein TamB"
                     /protein_id="HAY8870526.1"
                     /translation="MSLWKKISLGVVIVILLLLGSVAFLVGTTSGLHLVFKAADRWVP
                     GLDIGKVTGGWRDLTLSDVRYEQPGVAVKAGNLHLAVGLECLWNSSVCINDLALKDIQ
                     VNIDSKKMPPSEQVEEEEDSGPLDLSTPYPITLTRVALDNVNIKIDDTTVSVMDFTSG
                     LNWQEKTLTLKPTSLKGLLIALPKVAEVAQEEVVEPKIENPQPDEKPLGETLKDLFSR
                     SVLPEMTDLHLPLNLNIEEFKGEQLRVTGDTDITVRTMLLKVSSIDGNTKLDALDIDS
                     NQGIVNASGTAQLSDNWPVDITLNSTLNVEPLKGEKVKLKVGGALREQLEIGVNLSGP
                     VDMDLRAQTRLAEAGLPLNVEVNSKQLYWPFTGEKQYQADDLKLKLTGKMTDYTLSMR
                     TAVKGQEIPPATITLDAKGNEQQVNLDKLTVAALEGKTELKALLDWQQAISWRGELTL
                     NGINTAKEFPEWPSKLNGLIKTRGSLYGGTWQMEVPELKLTGNVKQNKVNVDGTLKGN
                     SYMQWMIPGLHLELGPNSAEVKGELGVKDLNLDATINAPGLDNALPGLGGTAKGLVKV
                     RGTVEAPQLLADITARGLRWQELSVTQVRVEGDIKSTDQIAGKLDVRVEQISQPDVNI
                     NLVTLNAKGSEKQHELQLRIQGEPVSGQLNLAGSFDRKEERWKGTLSNTRFQTLVGPW
                     SLTRDIALDYRNKEQKISIGPHCWLNPNAELCVPQTIDAGAEGRAVVNLNRFDFAMLK
                     PFMPETTQASGIFTGKADVAWDTTKEGLPQGSITLSGRNVQVTQTVNDAALPVAFQTL
                     NLTAELRNNRAELGWTIRLTNNGQFDGQVLVTDPQGRRNLGGNVNIRNFNLAMINPIF
                     TRGEKAAGMVSANLRLDGDVQSPQLFGQLQVTGVDIDGNFMPFDMQPSQLAVNFNGMR
                     STLAGTVRTQQGEIYLNGDADWSQIENWRARVTAKGSKVRITVPPMVRMDVSPDVVFE
                     ATPNLFTLDGRVDVPWARIVVHDLPESAVGVSSDVVMLNDNLQPEEPKTASIPINSNL
                     IVHVGNNVRIDAFGLKARLTGDLNVVQDKQGLGLNGQINIPEGRFHAYGQDLIVRKGE
                     LLFSGPPDQPYLNIEAIRNPDATEDDVIAGVRVTGLADEPKAEIFSDPAMSQQAALSY
                     LLRGQGLESDQSDSAAMTSMLIGLGVAQSGQIVGKIGETFGVSNLALDTQGVGDSSQV
                     VVSGYVLPGLQVKYGVGIFDSIATLTLRYRLMPKLYLEAVSGVDQALDLLYQFEF"
     gene            complement(31943..33676)
                     /gene="tamA"
                     /locus_tag="JN125_000655"
     CDS             complement(31943..33676)
                     /gene="tamA"
                     /locus_tag="JN125_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter assembly complex protein TamA"
                     /protein_id="HAY8870527.1"
                     /translation="MRYIRQLCCVSLLCLSGSAVAANVRLQVEGLSGQLEKNVRAQLS
                     TIESDEVTPDRRFRARVDDAIREGLKALGYYQPTIEFDLRPPPKKGRQVLIAKVTPGV
                     PVLIGGTDVVLRGGARTDKDYLKLLDTRPAIGTVLNQGDYENFKKSLTSIALRKGYFD
                     SEFTKAQLGIALGLHKAFWDIDYNSGERYRFGHVTFEGSQIRDEYLQNLVPFKEGDEY
                     ESKDLAELNRRLSATGWFNSVVVAPQFDKARETKVLPLTGVVSPRTENTIETGVGYST
                     DVGPRVKATWKKPWMNSYGHSLTTSTSISAPEQTLDFSYKMPLLKNPLEQYYLVQGGF
                     KRTDLNDTESDSTTLVASRYWDLSSGWQRAINLRWSLDHFTQGEITNTTMLFYPGVMI
                     SRTRSRGGLMPTWGDSQRYSIDYSNTAWGSDVDFSVFQAQNVWIRTLYDRHRFVTRGT
                     LGWIETGDFDKVPPDLRFFAGGDRSIRGYKYKSIAPKYANGDLKGASKLITGSLEYQY
                     NVTGKWWGAVFVDSGEAVSDIRRSDFKTGTGVGVRWESPVGPIKLDFAVPVADKDEHG
                     LQFYIGLGPEL"
     gene            33882..34520
                     /gene="msrA"
                     /locus_tag="JN125_000656"
     CDS             33882..34520
                     /gene="msrA"
                     /locus_tag="JN125_000656"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HAY8870528.1"
                     /translation="MSLFDKKHLVSPADALPGRNTPMPVATLHAVNGHSMTNVPDGME
                     IAIFAMGCFWGVESLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYD
                     PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAA
                     MLAADDDRHITTEIANATPFYYAEDDHQQYLHKNPYGYCGIGGIGVCLPPEA"
     gene            34843..36186
                     /locus_tag="JN125_000657"
     CDS             34843..36186
                     /locus_tag="JN125_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HAY8870529.1"
                     /translation="MLNSILVILCLIAVSAFFSMSEISLAASRKIKLKLLADEGNINA
                     QRVLNMQENPGMFFTVVQIGLNAVAILGGIVGDAAFSPAFHSLFSRYMSAELSEQLSF
                     ILSFSLVTGMFILFADLTPKRIGMIAPEAVALRIINPMRFCLYVCTPLVWFFNGLANM
                     IFRIFKLPMVRKDDITSDDIYAVVEAGALAGVLRKQEHELIENVFELESRTVPSSMTP
                     RENVIWFDLHEDEQSLKNKVAEHPHSKFLVCNEDIDHIIGYVDSKDLLNRVLANQSLA
                     LNSGVQIRNTLIVPDTLTLSEALESFKTAGEDFAVIMNEYALVVGIITLNDVMTTLMG
                     DLVGQGLEEQIVARDENSWLIDGGTPIDDVMRVLDIDEFPQSGNYETIGGFMMFMLRK
                     IPKRTDSVKFAGYKFEVVDIDNYRIDQLLVTRIDSKATALSPKLPDAKDKEESVA"
     gene            complement(36248..36454)
                     /locus_tag="JN125_000658"
     CDS             complement(36248..36454)
                     /locus_tag="JN125_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1107 domain-containing protein"
                     /protein_id="HAY8870530.1"
                     /translation="MKIFQRYNPLQVAKYVKILFRGRLYIKDVGAFEFDKGKILIPKV
                     KDKLHLSVMSEVNRQVMRLQTEMA"
     gene            36779..37333
                     /locus_tag="JN125_000659"
     CDS             36779..37333
                     /locus_tag="JN125_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtfJ family protein"
                     /protein_id="HAY8870531.1"
                     /translation="MTLRKILALTCLLLPMMASAHQFETGQRVPPIGITDRGELVLDK
                     DQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNT
                     DDAIPGSGMFVRSSLESNKKLYPWSQFIVDSNGVARGAWQLDEESSAVVVLDKDGRVQ
                     WAKDGALTQEEVQQVMDLLQKLLK"
     gene            complement(37423..>37721)
                     /locus_tag="JN125_000660"
     CDS             complement(37423..>37721)
                     /locus_tag="JN125_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870532.1"
                     /translation="IDDNFAIVIESLGFALKIYGGDERFRNGSSVVLEDEDYSLIYNF
                     LVNAGCQQVELAEQVDAIVSANLAVDSDITEEEICEKYKSTIEAFKKEQLALPV"
BASE COUNT         9216 a        10056 c         9287 g         9162 t
ORIGIN      
        1 atttttatag ggttctttat cgagattgaa aaataaggtc tcagctattt taattttaga
       61 ttgatcgcag ctaaaatctt tagattgatc gcggctaaaa tcaatatgat ttatcacgga
      121 gcatgcatac tttatctttt cagaatcacc aaaatattgc attcttttat taaaacacca
      181 atccagtatt cttacatcat taatatatgg gaattttaaa aaagtctcca gaatcgatga
      241 ccggtgtaag gttaactttt gcatcatcta aggaatcaat aagaatatga gacaggttaa
      301 ctttgatgtc attaatttca ttgtcagtag ctttcttatt attaagaaga taattattta
      361 ctgcgttaag gtcatctatt tctttcagta tccctttttc accaagcaag tatgaaatcg
      421 attcattaca tacataaggc attaatagca gatgttcttt ccttattgct aataatgcat
      481 tattcaatgg tttttctaat aaatccgtaa tcgtagaatc aactgaatct ttacaactca
      541 cctgcgagtt attcaagtcc tgagaattat taaactcctg cgaaatattt aatagacgag
      601 ctatttcctt gttagcttcg cgttggtaac atgccagaat cttgttagta atcaggtgta
      661 atgaactctc atcttttctt tcaaaggact ttccttcata acgattagtc gaaccatcag
      721 gttgttgaaa tataatagcc gtatgtcctt gacgagtccc catagtagtg aaagtggaaa
      781 gtgtgatttc tatttccacc ttagataaat ccgctcgttc cccttcagga ttattcataa
      841 caaactttat tatctcactg ccatcattat ttttgatata agatgaggac tcaatatgag
      901 ccatcatatt tcttcccgct tcgttggagc gtttgctaaa atccacataa cctagagtaa
      961 atatttttac caaaaattcc aaaaatgtct taggatcaag gatatttctt gtgttatcct
     1021 gcccctcggc attacgggca aaattattca ttccaacacg ccaggtattt aaaacttcac
     1081 ttttttgttt aaaattgtcg gctaatgtaa tgtgttgaga ataattcaaa tctgatattt
     1141 tgctcatgac gaactccttg agttaataag aacgtctaag cattacaaat tttactcaca
     1201 aaaaaatatc aaaaaacgct cttttcacaa actcgccgta aacctggagt tatttacggc
     1261 gaaaagtcat cacgccatca gcatcttcac tactgctttg cgaacccggg ctggcgcgcc
     1321 cactgcgcac agcggtttat gcacttcccc cggataaaac acaacaaaat caccttcatt
     1381 aaggataact gttttctcat caacgccttc cggcaaaaat gcgatgtctt tatcagctaa
     1441 ccagtcggta tccggggtgc ctgcaggttg cgtactgaag gtcatgcctt cctgaccttt
     1501 taacacaatc tgaatgtcga gatagcgggc atggtactcc gcacggcgag cttcgtgcgg
     1561 ctcggtcata tcttccgaga taagataaaa cagacgattg ccttcgatat cgtgcttgcc
     1621 ctttggcgtt tctgccgtaa cgtgtgcttt gatatgctca atcgcctggc gtaactcctg
     1681 gggtagccac ggctgaagat tatgaatatt tccgatgatc atcttttcca ctccttaatt
     1741 aaaacaacgt ttcatttcca tcgttatacg aaaagatgat caattccgct agccttaacg
     1801 cgtgaattat tgtcttatca caacttatcg gcaggcgcgt tcccgccttt cgggtcaagg
     1861 cccgcatcac tccttgagaa tagtttttat cgcttccccc gccagtgcag ctgttgcaca
     1921 gagttgttcg atggagtgcc cctcccgtgc cttcgcagaa agccctgaca tcacggtact
     1981 cataaaatca gtcacacatt gtgcgctttg tggatgccgc ctggcgatat agtcataaat
     2041 ggtcgtttct gcggcgtgat aatattgaac ggcaatatca cgcgcttgtg gatcatgact
     2101 atgaatgcct tcaagaacca tacagccagc gcagccgccg ttttggctat atctgcgcgc
     2161 cgcttctttt aatacctcag ccaggcactc ccctaccgga cgatcatcac gaagaatatc
     2221 ggcaagcgga atagcttccg taccgacata ttcattgagt acacggctaa ataacccagc
     2281 cttattgcca aaagccgcgt agaggctcgg ggggttaata ccaagataat cagtaacttc
     2341 agcaacactg acagcatcga aacctttttg gtgaaaaagc acttttgccg cagagactgc
     2401 ctgctcagga gcgaaacgtc tgggacgacc tggaacgcga gattgttttt tagtgaccat
     2461 tacaaaactt gttgacagaa agttaaaaca gttttgtaat gcatgttaca taataaatca
     2521 aggagtcctt atgggcgctt ttacaggtaa gacagttctc atcctcggtg gtagccgtgg
     2581 aatcggtgcc gctatcgtac gtcgtttcgt caccgatggg gccaatgtac gattcaccta
     2641 tgcggggtcg aaagatgccg ctgaacgcct ggcacaagag actggagcga cagcagtatt
     2701 cacagatagt gctgacaaag acgctgttat tgatgtcgtt cgtaagagcg gcgcattgga
     2761 tatcctggtg gtaaatgcag gtattggcgt ctttggcgat gccctggaat taaatgccga
     2821 cgatattgat cgccttttca aaatcaatat tcatgctcct taccatgcct ctgttgaagc
     2881 cgtccggcag atgcccgaag gcggacgcat cttaatcatc ggctccgtga atggcgatcg
     2941 tatgcctgtt gcaggcatgg ctgcttatgc cgccagtaaa tctgccctgc aaggcatggc
     3001 gcgcgggctg gcccgtgatt tcggaccgcg tgggatcacc atcaacgtcg tccagccagg
     3061 gccaattgat accgacgcta atcccgccaa cgggccaatg cgcgatatgt cgcatagttt
     3121 tatggccatc aaaagacatg ggcaaccgga agaggtcgct ggtatggtcg catggttagc
     3181 agggccagaa gccagttttg ttaccgacgc gatgcatacc attgatggcg cgtttggcgc
     3241 ataaccgact acgctcaatt aagcccagcc atttcccatg atgtctgggt tttgtttact
     3301 cacgtcgtcc gctaaaagcg gctcctggta aatataaatc ttctgttcat gtcgtaaatc
     3361 ttgaggataa ccaaatggta gaaagaaccg ctgttttccc tgctggacga cattcactgt
     3421 atgctgagca tcgttattct gcggctattc gttccggcga tttgctgttt gtttccgggc
     3481 aagtaggaag tcgagaggac ggaacaccag aacccgattt tcagcaacaa gtcagactgg
     3541 cctttgataa tttgcatgcg accctggcag ctgcgggatg cacttttgac gatatcattg
     3601 atgttacgag ctttcatacc gatccagaaa aacaatttga agacatcatg acggtgaaaa
     3661 atgaaatatt tagcgcgcca ccttatccaa cctggacggc ggtgggcgtt acatggctgg
     3721 caggctttga ttttgaaatt aaagtgatag cgcgcatccc tgagctctaa gcaatagtgc
     3781 tagccgttcg ttttcacact ccgccctata agtcggatga atggaataaa atgcatatct
     3841 gattgcgtga aagtgaaaaa gaaaaaagca ggaaatgtct gcaattattg ataccgagcg
     3901 acagttcccc ccagaatcac agtaaataaa aatgcatata ttttaacttt aaattcaaat
     3961 aaaccgtttg cgctgacaaa atattgcatc aattgcttgc accgcttctg acgatgagta
     4021 taatgccgga caatttgccg ggaggatgta tggttcagtg tgttcgacat tttgtcttac
     4081 cgcgtctgaa aaaagacgct ggcctgccgt ttttcttccc gttgatcacc cattcccagc
     4141 ccctcaatcg aggggctttt ttttgcccag gcgtcaggag ataaaagatg gctaatccgc
     4201 tatatcagaa acatatcatt tccataaacg accttagtcg cgatgacctt aatctggtgc
     4261 tggcaacagc ggcaaaactg aaagcaaacc cgcaaccaga gctgttgaag cacaaagtca
     4321 ttgccagctg cttcttcgaa gcctctaccc gtacccgcct ctctttcgaa acttccatgc
     4381 accgcctggg tgccagcgtg gtgggcttct ccgacagcgc caatacatca ctgggtaaaa
     4441 agggcgaaac gctggccgat accatttcgg ttatcagcac ttacgtcgat gcgatagtga
     4501 tgcgtcatcc gcaggaaggt gcggcgcgcc tggccaccga gttttccggc aatgtaccgg
     4561 tactgaatgc cggtgatggc tccaaccaac atccgacgca aaccttgctg gacttattca
     4621 ctattcagga aacccagggg cgtctggaca atctccacgt cgcaatggtt ggtgacctga
     4681 aatatggccg caccgttcac tccctgactc aggcgttagc gaagttcgac ggcaaccgtt
     4741 tttacttcat cgcgccggac gcgctggcaa tgccgcaata cattctggat atgctcgatg
     4801 aaaaagggat cgcatggagt ctgcacagct ctattgaaga agtgatggcg gaagtagaca
     4861 tcctgtatat gacccgcgtg caaaaagagc gcctggaccc atccgaatac gccaacgtga
     4921 aagcgcagtt tgttcttcgc gccagcgatc tccacaacgc caaagccaat atgaaagtac
     4981 tgcatccgct gccgcgtgtt gatgaaattg cgacggatgt tgataaaacg ccacacgcct
     5041 ggtacttcca gcaggcaggc aacgggattt tcgctcgcca ggcgttactg gcactggttc
     5101 tgaatcgcga tctggtactg taaggggaaa tagagatgac acacgataat aaattgcagg
     5161 ttgaagctat taaacgcggc acggtaattg accatatccc cgcccagatc ggttttaagc
     5221 tgttgagtct gttcaagctg accgaaacgg atcagcgcat caccattggt ctgaacctgc
     5281 cttctggcga gatgggccgc aaagatctga tcaaaatcga aaataccttt ttgagtgaag
     5341 atcaggtaga tcaactggca ttgtatgcgc cgcaagccac ggttaaccgt atcgacaact
     5401 atgaagtggt gggtaaatcg cgccccagtc tgccagagcg catcgacaat gtgttggtct
     5461 gcccgaacag caactgtatc agccatgccg aaccggtttc atccagcttt gccgtgcgaa
     5521 aacgcgccaa tgacatcgcg ctcaaatgca aatactgtga aaaagagttt tcccataatg
     5581 tggtgctggc caattaattg cggttggtaa taaaagtctg gctccctata atgagccaga
     5641 ctttttaccg ctgtaataaa ggagaaatca tgagcaaaac tatcgcgacg gaaaatgcac
     5701 cagcagctat cggtccttac gtacagggcg ttgatctggg aaatatgatc atcacctccg
     5761 gtcagatccc ggtaaatccg aaaacgggcg aagtaccggc agacgtcgct gcacaggcac
     5821 gtcagtcgtt ggataacgta aaagcgatcg tcgaagccgc tggtctgaaa gtgggcgaca
     5881 tcgttaaaac taccgtgttt gtaaaagatc tgaacgactt cgcaaccgta aacgccactt
     5941 acgaagcctt cttcaccgaa cacaacgcca ccttcccggc acgttcttgc gttgaagttg
     6001 cccgtctgcc gaaagacgta aagattgaga tcgaagcgat cgctattcgt cgctaatctt
     6061 gatggaaatc cgggctatca tgcccggatt aagtctgatg acaaacgcaa aatcgcctga
     6121 tgcgctacgc ttatcaggcc tacgtgattc ctgcaattga ttgaatttgt aggccggatt
     6181 aggcgtttac gccgcatccg gcatgaacaa aactcacttt gtctgcaatc tgaatccggg
     6241 ccaccatgcc cagtttattc tttactgcca gccgtaacga cggctataaa atcctttcac
     6301 caactgggtt aacgtcatat accctgccag aatcgcaacc agccacggga aatagcttaa
     6361 cggcaacgcc tgtaattgca gataactggc cagcggtgaa aacggcaatg cgatcccgac
     6421 aatcatcacg atcacggtca tgatcattaa cggccacgat gcacagctct gaataaacgg
     6481 cacacggcgg gtgcggatca tatgcacaat cagcgtttgc gacagtaagc ccaccacaaa
     6541 ccatcccgac tggaacagcg tttgcgtttc cggcgtgttg gcatggaata cccaccacat
     6601 caggcaaaac gtcagaatat cgaagatcga gctgatcggt ccgaagaaga tcataaagcg
     6661 ccccagatcc gccggattcc aacgctgcgg cttttgaatt tgctcgtcgt cgacgttatc
     6721 aaacgggatc gccacctgtg acacatcgta cagcaggttc tgaataagca agtgtaacgg
     6781 caacatcggc aggaagggca agaaagcact cgccaccagc acgctgaaca cattaccaaa
     6841 gttagaactc gccgtcattt tgatgtattt cagcatgttg gcgaaagtgc gacgtccctc
     6901 aataaccccc tcttccagca ccatcaggct tttttccagc aggatgatat cagccgcttc
     6961 acgggcaata tctaccgcgc cgtccacaga aatgccgata tccgccgcgc gtaaggcggg
     7021 cgcatcatta ataccatcgc ccataaagcc aaccacatgc ccttcgcgct tcagtaaggt
     7081 cacaatgcgt tctttatgca tcggcgtcag gcgggcaaac agcgtggtgc gctgtgcaag
     7141 atttgccagt tcgtcgtcag atagcgtttc aatatcacta ccaatgacca cctctcccgc
     7201 gtccagcccc acttcatggc acactttcgc tgcaactaac tcactgtcgc cagtaaggat
     7261 ttttacggta attccactcg cttttaatgc cttcagtgcc ggagcggttg tctcttttgg
     7321 cggatcaaga aaagcaatat atccttcgag gatcaggtcg gattcatccg cccgctggta
     7381 atctccttca cgcgctggca ggtatttcgt cgccaccgca accacgcgca gcccctgacg
     7441 attcagcgta tcagtaaccc gcttaatctt acgcagcatg atgtcatcga gcggcacaat
     7501 ctcgccattg tgacgcacct gcgaacacac attgaggatt tcctgcaatg cacctttgca
     7561 aaccagctga tggtgctcgg tattttctgc cactaccacc gacatccggc gacgctcgaa
     7621 atcaaacgga atctcatcga ttttttgcca acgactggcc agcgagcgcg ctgactcttc
     7681 atccgtacct tcgagcaccg ctgtatcgag caggttttta agtccggtct gataatgact
     7741 gttcaaccac gcgctatgca gcacgcgttc gctggtttta ccggagatat cggtatgatt
     7801 ctccagcaca attttatcct gcgtcagggt gccggtttta tcagtgcaca gaatatccat
     7861 tgcgccaaag ttctgaatag catccagatg tttgacgatc actttctgtt tcgacagctt
     7921 tactgcgccg cgcgccagcg tcgaggtaac aatcatcggc aacatttccg gcgttaggcc
     7981 taccgcgacc gaaagcgcaa acagcgccgc ttcccaccag tcgcctttgg tgtagccatt
     8041 gattaacagc accaccggtg ccatcaccag cataaagcga atcagcagca tactgacgcg
     8101 gctgatccct tgctgaaagg cattcggctc gctttcctgc tcactaacac gccccgccag
     8161 ttgaccaaac caggtattgg cacctgtagc aatcaccatt gcttgtgccg tgccgctcac
     8221 cacggtggtg cccataaaac acagcgtgtc gcactccagc ggattgctgt gctccggctg
     8281 gcgagtggta gcggcttttt ccacgggcag agactcaccg gttaacgacg cctgagcgac
     8341 gaacagatcc cgcgcttgca agatacgtaa atctgccggg atcatatccc ccgccgccag
     8401 ttttataata tcgccgggca ccagctggtc gatcgggatc tccagccagc cattttcgcc
     8461 tttgtcgtta attacgcgca gcaccgtcgc ggtattgctg accatcgctt tcagggcatc
     8521 tgccgcttta gtggaacgtg cttcctgaat aaagttcagc aacgtagaaa tagcgaccat
     8581 tagcgcgata acgcccgcag caaataaatc ttccgtggcg taagaaatag cgccgagaat
     8641 ggtgagtaaa atattaaagg ggttgcgata gcagacccat aaatgtaccc accacggcga
     8701 cagttgttgt gcgggtaatt tattttcacc atgttgttcg cgggcagatt ccacttccgc
     8761 ctgatttaac ccttccggat gggtgtcgaa cgttttccac aattcttctt cgggcatcac
     8821 cgccattttc aggcaatgcg cacttaagga cggcgggacc accgtattca ctgtctgctg
     8881 cgcgccaggc aatggatcac gatgaaccag acgggaaggt aaatggcgaa tgagccgggt
     8941 aaaaatttct ttaaacataa ggagtccctc cgcactgtct gaaacagtac agaaatgtct
     9001 tcaggcgtgg cgaagcctta cctgaaggta ataaagctga gcagggacgt taaaacgtca
     9061 cggccttacg catccggtaa cgccgtgaaa agacgggctt accggaaaag ttttaatctc
     9121 tgtcgaggga gaggcgtggg atcaggttcc atataacctc cggtaagtga aaaaagcgcc
     9181 gcaaataata aggagaatac aataatattc gtagcatcta tggcgatata atacctgctg
     9241 gcaactaaac caacgataaa ccagacttta cccattgctg aatgcacggg taaagttagg
     9301 ctcaaataat taaacaacac gttacaggac aacaggatgc aaaatcggct gaccatcaaa
     9361 gacatcgcgc gcttaagcgg cgtggggaaa tctacagttt cccgggtgct gaataacgaa
     9421 agcggcgtga gccagcgcac ccgcgagcgt gttgaagcag tgatgaatca gcatggattt
     9481 tccccttccc gctctgcgcg cgctatgcgt gggcaaagcg ataaagtggt cgccatcatt
     9541 gttacccgcc tggattcgtt gtcagaaaat ctcgccgttc aaaccatgct gccagagttc
     9601 tatgaacaag gttacgaccc aatcatgatg gaaagtcagt tttccccgca attagttgcc
     9661 gaacatttgg gggtgctgaa acggcgtaat atcgacggcg tagtgctgtt cggttttacc
     9721 ggcataacag aagaaatgtt agcccactgg cagtcatcgc tggttctgct ggcgcgtgac
     9781 gcaaaaggct ttgcttcggt ctgttatgac gacgaagggg caatcaagat cctgatgcaa
     9841 cggctgtatg accaggggca tcgtaatatc agttatctcg gcgtgccgca cagtgacgtg
     9901 acgaccggta agcgacgtca cgaagcctac ctggcgttct gcaaagcgca taaactgcat
     9961 cccgttgccg ctctgccagg ccttgctatg aagcaaggct atgagaacgt agcaaaagtg
    10021 attacgcctg aaactaccgc cttactgtgc gcaaccgaca cgctggcact tggcgcaagt
    10081 aaatacctgc aagagcaacg catcgacacc ttgcaactgg cgagcgtcgg taatacgccg
    10141 ttaataaaat tcctccatcc ggagatcgtc accgtagatc ccggttacgc cgaagctgga
    10201 cgccaggcgg cctgccagtt gatcgcacag gtaaccgggc gcagcgaacc gcaacaaatc
    10261 atcatccccg ccaccctgtc cagatcgttt cctgaacgat aaattgtgat cttcgctgtg
    10321 tttcgggaac gttccctttt ttaaattttt ccgcgcaata tattctgcag ccaaccaaaa
    10381 atgtcatctg ccatggggtt ttatgatgag caaaataaac caaacggata tcgatcggtt
    10441 gattgaactg gtcggcgggc gcggcaatat tgcgacggtg agccactgta ttactcgcct
    10501 acgctttgtc ctcaaccaac cggccaatgc cagaccgaaa gaaattgagc aactccccat
    10561 ggtgaaaggc tgtttcacca atgccgggca atttcaggtg gtgattggca ccaacgtggg
    10621 tgactactat caagcactga tagcgtcaac cggacaggcg caggttgata aagagcaggt
    10681 aaaaaaagcc gcccggcaga atatgaaatg gcatgagcag ttgatctctc atttcgcaga
    10741 gaccttcttc ccgttgctgc ccgcgttgat tagcggcggt ttgatcctcg gttttcgcaa
    10801 tgtgatcggc gatttgccca tgagcaacgg tcaaacgctg gcgcaaatgt acccttccct
    10861 gcaaacgatc tacgattttc tgtggttgat cggtgaagcg atcttcttct acctgccggt
    10921 cgggatttgc tggtcagcgg tgaaaaaaat gggcggcaca ccgatccttg gtatcgtgct
    10981 tggcgtgaca ctggtttccc cccaactgat gaacgcttat ctgctcgggc agcagctgcc
    11041 ggaagtgtgg gactttggca tgttcagcat cgccaaagtg ggctatcagg cgcaggtgat
    11101 cccggcactg ttagccgggc tggcgctggg cgttattgaa actcgcctta aacgcatcgt
    11161 gccagattac ctctatctgg tggtggtgcc cgtctgttcg ctgatcctcg cggtgttcct
    11221 cgcccatgcg ctgattggtc cgtttggtcg catgattggc gatggcgttg cctttgcggt
    11281 acatcacctg atgaccggca gctttgctcc gattggcgcg gcattgtttg gcttcctgta
    11341 cgccccgctg gtgatcaccg gggtacacca gaccacgctt gctattgatt tgcagatgat
    11401 tcaaagcatg ggtggtacgc cagtgtggcc actgattgcg ctgtcgaata tcgctcaggg
    11461 ctccgccgtg atcggcatta tcatttccag ccgcaagcac aatgaacgcg agatctccgt
    11521 gcctgcggcg atctccgcct ggcttggggt cactgagcct gcaatgtacg gcatcaacct
    11581 gaaatatcgc ttcccgatgc tgtgcgcgat gattggttct ggtctggcag gattgctatg
    11641 cggcctgaac ggcgttatgg cgaatggcat cggcgtaggc ggcctgccgg gaattctctc
    11701 gattcaaccg aactactggc aggtgtttgc gctggcaatg gctatcgcca tcatcatccc
    11761 gattgtactc acctcgttta tctatcagcg gaaataccgc ctgggcacgc tggacattgt
    11821 ttaattttct tcggggcgca attgcgcccc ctcgcatttg caggaataac gtaatgacta
    11881 atcctcccca ctggtggcaa aacggcgtta tctaccagat ttatccaaag agttttcagg
    11941 acaccacggg tagcggtacc ggcgatttac gtggcgttat ccaacgcctg gactatctgc
    12001 ataaactggg cgttgatgcc atctggctaa ccccctttta tgtctctccc caggtcgata
    12061 acggttacga cgtagcgaac tatacggcga ttgatcccac ctacggcacg ctggacgatt
    12121 ttgacgaact ggtgacgcag gcaaaatcgc gcgggattcg tatcattctc gatatggtgt
    12181 ttaaccatac ctctacccaa catgcctggt ttcgcgaggc gctgaacaaa gaaagccctt
    12241 accgccagtt ttatatctgg cgcgatggag aaccagaaac gccaccgaac aactggcgtt
    12301 caaaatttgg cggtagtgcg tggcgctggc atgcggaaag cgaacagtac tatttgcatc
    12361 tctttgcacc agaacaggcg gatctcaact gggagaatcc agcggtacgc gcagtgctga
    12421 aaaaagtctg tgagttctgg gccgatcgtg gggtcgacgg gttgcgcctg gatgtggtga
    12481 atctgatctc caaagacccg cgtttccctg atgacctgga tggcgacggg cgtcgcttct
    12541 acaccgacgg gccacgagca cacgagtttt tgcacgagat gaaccgcgat gtgtttacgc
    12601 cacgcgggtt aatgaccgta ggtgaaatgt cctccaccag ccttgagcat tgccagcgat
    12661 acgcggcact gacaggcagt gaattgtcga tgacctttaa ttttcatcac ctgaaggtcg
    12721 attatcccgg tggtgaaaaa tggacgctgg ctaaacctga ctttgtggcg ttgaaaacat
    12781 tgttccgcca ctggcaacaa ggaatgcaca acgtagcatg gaatgccttg ttctggtgta
    12841 accacgatca gccgcgcatt gtttctcgct ttggtgatga aggtgaatac cgcgtgcctg
    12901 cggcaaaaat gctggcgatg gtgctgcatg gcatgcaggg aacgccgtat atctaccagg
    12961 gcgaagagat tggcatgacc aacccgcatt tcacgcgcat tactgactat cgcgacgtag
    13021 agagcctcaa tatgtttgcc gagctgcgca acgatggtcg tgatgccgac gagttattgg
    13081 caatccttgc cagtaaatcc cgtgacaaca gccgcacgcc catgcaatgg agcaacggcg
    13141 ataatgccgg atttacggct ggcgaaccgt ggattggcct aggtgataac tatcaacaaa
    13201 tcaacgtaga agccgcgctg gccgatgatt cctcggtgtt ttacacctac caaaagttaa
    13261 tcgcactgcg taagcaggaa gccatcctga catggggcaa ttaccaggat ctgctgccaa
    13321 acagccctgt attgtggtgc tatcgccgtg aatggaaggg gcaaaccttg ctggtcattg
    13381 ccaaccttag ccgtgagatc caaccctggc agccagggca aatgcgcggc aactggcagc
    13441 ttgtgatgca taactacgaa gaagcctcac cacaaccctg tgccatgaat ttacggcctt
    13501 ttgaggctgt ctggtggtta cagaagtaaa tcttccctaa gccccggtaa tgccggtcat
    13561 tccggggttt tgtctgtcag catgttgttt ttgtttattt ttcaaccagc aaattcatta
    13621 aaaaatttac ataacgctgt agcgcccgtc atccgtacgc tctgcttttt actttgagct
    13681 acatcaaaaa aagttcaaac atccttgatg caaagcacta tatatagact ttaaaattcg
    13741 tcccaaccca atatgttgta ttaatcgact ataattgcta ctacagctcc ccacgaaaaa
    13801 ggtgcggcgt tgtggaaaag cggatggcga ttgcggaaag caccggaaaa cgaaacgaaa
    13861 aaaccggaaa acgcctttcc caatttctgt ggataacctg ttcttaaaaa tatggagcga
    13921 tcatgacacc gcatgtgatg aaacgagacg gctgcaaagt gccgtttaaa tcagagcgca
    13981 tcaaagaagc gattctgcgt gcagctaaag cagcggaagt cgatgatgcc gattattgcg
    14041 ccactgttgc tgcagttgtc agcgagcaga tgcagggccg caaccaggtg gatatcaatg
    14101 agatccagac cgctgttgaa aaccagctga tgtcaggtcc atacaaacaa ctggctcgtg
    14161 cttacatcga gtaccgtcac gatcgcgaca ttgaacgtga aaaacgcggt cgcctgaatc
    14221 aggagatccg tggtctggtc gagcagacca acgcctcgtt actcaacgaa aacgccaaca
    14281 aagacagcaa ggtgattcca acccagcgcg acctgctggc cgggatcgtg gctaaacact
    14341 atgcacgtca gcacctgctg ccgcgtgacg tggtgcaggc acatgagcgt ggcgatattc
    14401 actatcacga tctcgattac tcgccgttct tcccgatgtt caactgcatg ttgatcgacc
    14461 tgaaaggcat gctgacccag ggctttaaga tggggaacgc cgagattgaa ccgccgaagt
    14521 cgatctctac ggcaaccgct gtaactgcgc agattattgc tcaggtcgcc agccatattt
    14581 atggcggcac caccattaac cgtatcgatg aagtgctggc accgtttgtc accgccagct
    14641 acaacaaaca tcgcaagacc gcagaagagt ggaacatccc ggacgccgaa ggctacgcta
    14701 actctcgtac cattaaagag tgctacgatg ccttccagtc gctggagtac gaagtaaaca
    14761 ccctgcacac cgccaacggt cagacgccgt ttgtaacctt tggttttggt ctgggcacca
    14821 gctgggagtc gcgcctgatt caggaatcta tcctgcgtaa ccgtatcgca ggcctcggta
    14881 aaaaccgtaa aactgcggtg ttcccgaaac tggtgtttgt gattcgcgat ggcctgaacc
    14941 ataaaaaagg cgatccgaac tacgacatca aacagctggc gctggagtgc gcaagcaagc
    15001 gcatgtatcc ggatatcctg aactacgatc aggtagtgaa agtcaccggt tcgtttaaaa
    15061 ctccgatggg ctgccgcagc ttcctcggcg tgtgggaaaa tgaaaacggc gagcagatcc
    15121 acgatggtcg taacaacctc ggcgtgatca gcctgaacct gccgcgtatt gctctggaag
    15181 caaaaggcga tgaagccacc ttctggaagc tgctggatga acgtctggtg ctggcacgta
    15241 aggcgctgat gacccgtatc gctcgtctcg aaggcgtgaa agcgcgcgtg gccccgatcc
    15301 tctatatgga aggtgcttgt ggcgtgcgtc tcaatgctga cgatgatgtt tctgaaatct
    15361 tcaaaaacgg tcgtgcgtct ctttcgctgg gttacatcgg catccacgaa accattaacg
    15421 cgctgttcgg cggcgagcat gtttacgaca acgagcagct tcgcgcgaaa ggtatcgcca
    15481 ttgttgaacg tctgcgtcag gcagtggatc agtggaagga agaaacgggt tatggtttca
    15541 gtctctacag cacgccgagt gaaaacctgt gcgaccgctt ctgccgtctc gatactgctg
    15601 agtttggcgt ggtgccgggc gtgaccgata aaggttacta caccaacagt ttccacctcg
    15661 atgtggagaa gaaggtgaac ccgtacgaca agatcgactt tgaagcgcct tacccgccgc
    15721 tggcgaacgg tggtttcatt tgctacggcg agtatccaaa cattcagcac aacctgaagg
    15781 cgctggaaga tgtctgggat tacagctatc agcatgtacc gtattacggc accaatacac
    15841 cgattgatga gtgctacgag tgtggcttta ccggtgagtt cgagtgcacc agcaaaggct
    15901 tcacctgccc gaaatgtggt aaccatgacg cctcccgtgt gtcggtaact cgccgcgtgt
    15961 gcggatattt aggtagcccg gatgcacgtc cgtttaacgc cggcaagcag gaagaagtta
    16021 agcgccgcgt taaacatttg ggaaatgggc agataggttg atctgcacta agcaaatgcc
    16081 ggatgtgatg tgaaagcgtc gcatcccgcg ttgattgccg gatgcggcgt aaacgcctta
    16141 tccggcctac atttggcaac ggctgtaggc ctgataagac gcgacagcgt cgcatcaggc
    16201 attgattacc ggatgcagtc tacacgtgga ctgataagcc aggcgaaata atgaattatc
    16261 atcagtacta tcctgtcgac atcgtcaacg gccccggcac tcgttgcacc ctgtttgtct
    16321 ccgggtgtgt tcatgaatgc cccggttgct ataacaaaag cacatggcgg gtaaattccg
    16381 gtcagccatt tactaaagca atggaagacc agatcattaa cgatctgaat gacactcgta
    16441 tcaaacgcca gggtatttcc ctctccggcg gcgatccgct gcatccgcaa aacgtgccgg
    16501 atattctgaa actggtacaa cgcatccgcg ccgagtgtcc gggtaaagac atctgggtgt
    16561 ggacaggcta taaactcgac gaactcaacg cagcgcaaat gcaggttgtt gatttgatta
    16621 acgtgctggt cgacggcaaa tttgtgcagg atttaaaaga cccttccctg atctggcgcg
    16681 gcagcagcaa tcaggtggtg catcatttgc gatgataagt tccctgttac ctgagtgcag
    16741 gcaacaggga aatgaggaat taacgatact tctggtgata ggcgttgcgg gtcgttttca
    16801 gttgctctgc ggcagcctgc gcttctttta ctttaccttc atttgccagc ttcagcgcgt
    16861 cgtcaatctg accgaccaga atatcgaaac cgtgacggaa gtctttcatc tccgggctgt
    16921 ccggtgattt gccttcgagc ttcggcggcg ttgctttttg cgcatccagc gctgcggcgc
    16981 gcatcttcgt taacgcgtct ttgacttgcg ccgcgttatc ggctttttcg accactttta
    17041 aattgtcgtt gagggtttcc atattgtctt caagatcagc ggcaaacgac gccgaactga
    17101 ataccaacga ggagactgca agaatagcta acaggctttt tcgcattgct cacatccttt
    17161 tttatttaca cttcatcatt cacactgcct catcgacgac tacgctcatt cgaccgggtc
    17221 acgtactgcg agtacgctcc ccggccctca ttcactttcc gtatcgatgc agtgcgaatg
    17281 attttgtgta attttttagt ttatagcgcg acaggtcgcg ccagtttttt tactgtccgg
    17341 cgattttcat ctccggcaac agcacagaac cacactgtat attactgcgt gtttcaatat
    17401 cgttaccgac ggtgacaata ttgcgccaca tatcttttaa attacctgcg atggtgattt
    17461 cgctaaccgg atactgaatt tcgccgtttt ctacccagaa gcccgccgca ccacgggaat
    17521 aatcaccggt aattgcactc acgccctggc ccatcaattc cgtcaccacc agcccggtgc
    17581 ccatctcttt gagcatctgc tcgaagctta gaccttgtcc ggcaatccgc cagttgtgaa
    17641 taccgcccgc atgtccggtg cttttcagcc ccagttttcg cgccgaatag ctggtcagca
    17701 gccactgagt caggatgcca tctttaataa tatcgcgacg ctcggtgcgc acaccttcgc
    17761 tgtcgaatgg cgtcgacgcc agccctttca gcagatgcgg atgctcttca atggtcagcc
    17821 agtccggcag aatttgttta cccagcgaat ccagcaggaa ggtagattta cggtaaaccg
    17881 atccacccgc tatcgccccc accagatggc caaaaagccc ggttgccact tcattggcaa
    17941 aaatgaccgg cgctttcatg gtggagagtt tacgcggtga caggcgcgat aaagtacggc
    18001 gagcacagtc ggccccaacc cactctggcg tttgcagatc gctcatcgca cgaccaatgg
    18061 tgtaggcgta atcacgctcc atatcgccat tttcttcggc aattacacag ctggagagcg
    18121 aatgacgcgt tgagcagtaa ccctgcaaca tgccgtggct gttgccaaaa actttaacac
    18181 cgtagtggct gttaaagctg ccaccttcgg tattggtgat gcgtttgtcc gcctgcaatg
    18241 ccgcctgttc tgcgcgggcc gccagttcaa tggcttcatc cggggaaact tccgcagggt
    18301 ggaacaagtc gagatctggt gcgtcaaagg ccagcagctc tttgtctgcc acgccggcac
    18361 agggatctgg cgaggtataa cgggcaatat ccagcgccgc ctgtacagta cgggcaatgg
    18421 cctgcgggct taaatcggtg gatgatgcgc tacctttgcg gttctggtga taaacagtga
    18481 tccccagcgc gccatcgcta ttgaattcaa cattctccac ttcaccataa cgcgtgctta
    18541 cgctaatgcc ggtggtcttg ctgacggcaa cttccgcacc gtccgatttg cctgaggcca
    18601 actccagcgc agtggaaact gcttcttcca gaatcttgcg ctgcgcttca acttgagaga
    18661 ttactttcat tgcaagtgcc ataatgtaga gagtttctct gaagtctaac agagaaccgt
    18721 ttttcagtgc gcatcttaac tggtaacatt agcctctttt tttaaggagc ctgagatgac
    18781 taagcagccc gaagactggc tcgacgacgt tcccggtgat gacatcgaag acgaagacga
    18841 tgaaattatc tgggtcagta aaagtgaaat taaacgtgat gccgaggagc taaaacgcct
    18901 tggcgcggaa attgttgatc tggggaaaaa cgcgctggat aagatcccgt tagatgcgga
    18961 tctgcgcgcg gctattgagc tcgcccagcg tattaagatg gaaggtcgcc gccgccagtt
    19021 gcagctcatc ggtaagatgc tgcgccagcg cgatgtagaa ccgatccgtc aggcgctgga
    19081 taagctgaaa aaccgtcaca accagcaggt ggtgctgttc cataaactgg aaaacctgcg
    19141 cgatcgtctg atcgatcaag gtgatgacgc catcgctgag gtattaaatc tgtggcccga
    19201 tgccgatcgt cagcaactgc gtactctgat ccgcaacgcg aagaaagaga aagaagggaa
    19261 taagccgccg aaatccgcac gccagatttt ccagtatctg cgcgaactgg cggagaatga
    19321 agagtaattt tcgttgttga tgtgagtatg gtttgccgga tgcggcgtaa acgccttatc
    19381 cggcaatgct atctcaggct gaggccgaat tactgcgcag cttccgcctt cttcgccaga
    19441 ccatccagca gtttctgatg gatcccacca aaaccgccgt tgctcatcac cagaatatgg
    19501 tcgccaggct gagcggtttt caccaccata tctgccagcg tatccacatc gccactccag
    19561 tgtgcaggct gaacgcaggc ttctgccact tctgccacct gccacggaat atgcgccggt
    19621 tgcagcagga agacttcatc ggcacgacct aatgaaggtg ccaaatcgtc tttgcagatc
    19681 cccattttca tggtattcga gcgcggttcc agcacagcaa taatgcgcgc tgtaccacca
    19741 actttgccac gcagcgccgc cagcgttgcc agaatcgccg tcgggtgatg ggcaaaatcg
    19801 tcatataccg tgacgccatt cgcttcacca cgcaactcca gacggcgacg agcattaata
    19861 aacgaaccca gcgcgttagc ggtatctgcc ggcgctacgc caacatggcg ggccgccgca
    19921 atcgccatca ggccattatg catattatgt tcgcctacca gcgaccattt cacttcgccc
    19981 actttttcgc catccagcaa gacttcccat tcggaagcat cggtggtcag ctttttcgcc
    20041 tgccagtgcc cctgctcacc caccagctcc tgctcgctcc agcagcccat cgccatggtc
    20101 tgtttcaggt tgatgtcatt ttccggccag ataatacggc cctgccccgg aacgatacgc
    20161 accagatggt ggaactgttt ctggatcgct ttcaggtcgt caaagatatc ggcgtgatcg
    20221 aactcaaggt tgttaaggat cagcgtacgc gggcagtaat ggacaaattt agagcgtttg
    20281 tcgaagaagg cgcagtcgta ctcatccgct tcgataacaa agaagtcgct ttcgcccaga
    20341 cgcgccgaaa cctcaaagtt ccccggcaca ccgccgatca caaatcccgg tttgtaacca
    20401 cactgttcca gaatccaggt cgccattccc gcggtggtgg ttttgccgtg tgtaccggca
    20461 acggccagca cccagcggtc gcgcagcaca aaatcgtgca gccactgtgg acctgacata
    20521 taagggatgt ttttttccag taccgcttcc acacacggat ttccacgggt catggcgttg
    20581 ccaataatca ccagatccgg ctgcggatcg agctggctgg catcgtaacc ctgaatcagt
    20641 tcaatgcctt gcttctcaag taaggtgctc atcggcggat acacattggc gtccgaaccc
    20701 gttacttcat ggcctaactg gcgcgccagc atcgccagac cgcccataaa cgtgccacaa
    20761 attcctaaaa tatgaatgcg catacgtcac tatccttttt taatctgccg ctcattttac
    20821 gcatatgtcg ggcaagtgag aaacgcattt caggataatc cgtaatttgc tggcgcgatt
    20881 cacctgagcg caacattgag attatttgtt aagattgttg cggtcgcttt actccataaa
    20941 cattgcaggg aaagttttat gaaaacgtta ggtgaattta ttgtcgaaaa gcagcacgag
    21001 ttttctcatg ctaccggtga gctcactgct ttgctgtcgg caataaaact gggcgccaag
    21061 attatccatc gcgatatcaa caaagcagga ctggttgata tcctgggtgc cagcggtgct
    21121 gagaacgtgc agggcgaggt tcagcaaaaa ctcgacttgt tcgctaatga aaaactgaaa
    21181 gccgcactga aagcacgcga tatcgttgca ggcattgcct ctgaagaaga agatgagatt
    21241 gttgtctttg aaggctgtga acatgcaaaa tacgtggtgc tgatggaccc actggatggc
    21301 tcgtccaaca tcgatgttaa cgtctctgtc ggtaccattt tctccatcta ccgccgagtt
    21361 acgcccgtcg gcacgccggt aacggaagaa gatttcctcc agcctggtaa caaacaggtt
    21421 gcggcaggtt acgtggtata cggctcctct accatgctgg tttacaccac cggatgcggt
    21481 gttcacgcct ttacttacga tccttcgctg ggcgttttct gcctgtgcca ggaacggatg
    21541 cgcttcccgg agaaaggcaa aacctactcc atcaacgaag gaaactacat taagtttccg
    21601 aacggggtga agaagtacat taaattctgc caggaagaag ataaatccac caaccgcccg
    21661 tatacctcac gttatatcgg ttcactggtt gcggatttcc accgtaacct gctgaaaggc
    21721 ggtatttatc tctacccaag caccgccagc cacccggacg gcaaactgcg tttgctttat
    21781 gagtgcaacc cgatggcatt cctggcggaa caagcgggcg gtaaagcgag cgatggcaaa
    21841 gagcgtattc tggatatcat cccggaaact ctgcaccagc gccgttcgtt ctttgtcggc
    21901 aacgaccata tggttgaaga tgtcgaacgc tttatccgtg agttcccgga cgcgtaatct
    21961 cctgcgcctc tccacacgga gaggcatttt tatcgctgcg caatgttgac tcttgtcact
    22021 ggcgaactct gacgattctc ccacagcacc gttaacccac gctgtaatgc tataaaaata
    22081 aacaacaaaa taccgatggc gattttcgtc caccaggaac tcagcgtgcc gtcaaagttg
    22141 atgtaagtct ggatcagtcc ctgaattgcc acgccaaaaa gcgtcccaag caccgtcccg
    22201 acgccaccac ttaacaacgt accgccaatc accaccgacg cgatggcgtc cagttccaca
    22261 cctacgcccg ccagtgcata tccggcctgg gtataaatcg agaagacaat ccccgccagt
    22321 gttgccagtc cggtggagag catataaatg cgaatagtgg tgctgcgagt agaaatcccc
    22381 atcaggttcg ccgacgtcgc gttgccgcca atagcgtaca cctgattgcc aaaacgggta
    22441 cgatgcgcaa ggaaaatacc gataaccacc accagcatca acagccccat cgcactaagg
    22501 tgaccgccgc cggggatttt ccacgcaagg cttgagagcg tgtcataaat gggatggttt
    22561 atcggaatcg actcttccga aacgagatag ctgacgccgc gcaaaaagaa catccccgca
    22621 agcgtaatga taaatgccgg gatcttcagg gcgtcgatca gaagccccat aaatgcgccg
    22681 aaggcacagc ccatcaccag cactagcgga aacgccagca gcggcgagag gccgaaatcg
    22741 ccaaccactt ttgccagaaa cacgccagta aaggcgatca ccgaaccgac ggagagatcg
    22801 ataccgccag agaggatcac aaaggtcata ccaacggcaa taatccccag aaaagcgtta
    22861 tcggtcagga tattgcagat cactcttgtg gaagcaaaac cgggaaactg cgtcaggcag
    22921 tagaaatagc ccagcacaaa gacgccgatg gtgatcatca gtggcaaatt acgttttatc
    22981 acggctacgt actcctttaa tcagactgat aaagcgttgc gactggacaa tcagcacgca
    23041 aagcaccacc accgctttca ccacctggtt catctccggt ggaaagcccg aaagcaaaat
    23101 tccggtgttc atcccctgaa taatcagcgc ccccactacc gagagcagca ggttaaagcg
    23161 cccgcccatc agcgatccgc cgccaatcac caccgcgaga atggcgtcca gctccagcca
    23221 taatccggcg ttgttggcat cggcaccgcg aatatccgcc gccacgataa tgcccgcaat
    23281 cgccgcacac agcccgctca acacataagt gagcatgacg atgatccgcg tgtttacccc
    23341 ggcatttttt gccgcccgaa tgttgatacc aacggcttcg ataaacatcc ccagtgccgt
    23401 tttgcgggtc aacagccaga acaggagaag cgtcagtacc gcaataatga ctgccgttgg
    23461 caggaacaac agcgatccac tgccaaacca tgagagatcc ggcgagttaa acgtgacgat
    23521 ctgtccggag gtgatcagtt gcgccacgcc gcgcccggcg accatcagga tcagggtggc
    23581 gacaaatggc tgaattttga ggatcgctac cagtatgccg ttccacaatc ccgccaggat
    23641 gccggtgccc agggcgctta acaaaacaat cggcaggctg acttccgcga ccgtcatcgc
    23701 agccgttgtg gctccggcga tagccatcac cgcccctacg gagagatcaa tcccaccggt
    23761 ggcgatcacc agcgtcatac caatcgccag taacgcaacg ggggctgcac ggttaagaat
    23821 gtctatgggg ctaccgaaca aacgcccatc ctgaagcact acctgccaga aatgcggggc
    23881 taccaggctg tcgaccagca gcaccagcaa tagtgctacc agctgcggca tccccgtcgg
    23941 ccagcgaaag cgcctttttg gcgtagtggt gtccggaaga gattgaggca tcacactgtt
    24001 ctccttacgc cgcaatggcg ttcatgatag ccggaacgga aagctctgcc agccggatct
    24061 ccgccacctg tttgcgatcg agcatgatga tcacccggtc ggcatagccc accagttctt
    24121 ccagttcgga ggagatcacc agcagcgcca gaccatcggc gcatagcgtt tcaatcaggc
    24181 ggatgatctc ggcgtgggca ccaacatcaa tgccacgggt tggctcatcg aggatcagaa
    24241 attgcggtcg ggtcagtagc caacgtgaaa gcaacacttt ttgctgattg ccgccggaga
    24301 gaaattcaat cggttgttca gttgaaggtg tgcgaatgcc aagctggcgg ataaagcgtt
    24361 cggcaatctc ttgctgctct ttgcgggaaa tgggtcgtag ccagccgcgc tgggcctgga
    24421 gagcgaggat gatattttcc cgcaccgagg cggcagcgat gatgccatcg gttttcctgt
    24481 cttccgggca gaagccgatg cccagtaccg aagcctgatg tggcgatcgc aggttttgcg
    24541 gtttgccttt gatcaacgcc gtgccgctgt cagcaggttt gataccgaag atcacttcgg
    24601 cggtttcggt acgtccggat cccagcaagc ctgccaggcc gacgatctcg ccggggcgca
    24661 cttcgagatc aaacggtgct atcgttcctt ttttgccgta atttttgaac gcggcaacgg
    24721 gtttgtcgct caacaatgtt cgcccggcac gctgtagcgc gtgggtatcc agctcgcgcc
    24781 ccagcatcat ttttaccagt tcgatctgcg gtagctcgcg cgtttcccga cagcctacga
    24841 aactgccgtt gcgtaaaacg gtgatccgat cgctgacctg atagatctga tcgagaaagt
    24901 gagtgacaaa gatcaggctg acgccgcgat cgcgcaactg acgcatcagg ccaaataata
    24961 gctccacttc ctaggtgtcg aggctggcgg tgggttcatc gaggatcagc actttggcgg
    25021 agagatcgat agcccggcaa atggcgacga tttgctgcat cgcgactgaa aagcggttga
    25081 gcggttcgcg cacgtcgagg gagaaaccgt aagatgccat cagttcggtg gcgcgctttt
    25141 ccatctcttt gcggcgtaga aggccgaagc gtttgggttc gcggcctata aatagattat
    25201 cagcgaccga catattgggt agcaggttga cttcctgata gacggtgcca atgccgagtt
    25261 gttgcgcgtg ggcggtattt ttcggtgaga taacctggcc ttccagccag atggtgccgc
    25321 gatcggcgtg gtatacacca gttaatgctt tgattagcgt tgattttccc gccccgtttt
    25381 caccgagcag cgccatgatt tcgccacggc gcaggctgaa atcaacgttg tctaacgctt
    25441 tgacgccggg gaaaaattta cttaatcctt cggtgcggag gatttcctgg tgttggtctg
    25501 tcgtcatggt ttcccccggt gtaaagcgtg ctcccagtag gcatgataag acgcggtaag
    25561 cgtcgcatca ggcttcagtg caccatcgcc ggatgcggcg cgagcgcctt atccggccta
    25621 cgaatcggca tcaggcatag caaccctcaa taccccatat ttttcttctt ctctaactct
    25681 tcttttgcgg tatcaggcag gtaaagggtg gatttggtta acgtcagctt ttcaggcatg
    25741 gtgccgtctt ttttgtattt ctccagcgcg tcaaaagcgg gtcccgccat attcggcgtc
    25801 agttcaacac tggcgttcgc ttcgccatca atcatcgctt tgtagatatc cggtacgcca
    25861 tcgatagaac ctgtcagaat atctttgccc ggtttcaggc ccgcttcttt aattgcctga
    25921 attgcaccaa tcaccatgtc gtcgttatgg gcgtaaacca tgcagatgtt tttgccgttg
    25981 ttttccgctt tgataaagct ctccatgact tctttgcctt tactgcgggt gaagtcacct
    26041 gactgcgagc ggataatttt gatatttggc gcattcttaa tggcttcggc aaagcctttc
    26101 ttacggtcaa tggcgacgct ggccccaacg gtgccctgca gctccaccac gttgcatggt
    26161 ttgccattca cttcttttac cagccagtca ccgatcaact taccttcgag gatgttgtcg
    26221 gcagtaacgg tggtcatata gagagatttg tctttcacat cgatggaacg gtcgagcaag
    26281 aagaccggga tttcggcatc tttcgcctct tttaataccg gttcccaacc cgtcgcaacc
    26341 actggagcga taaagatcgc atccacccct tgtgcaacga aggaacgtac cgctttaatc
    26401 tggttttcct gcttttgctg accatcggca attttcaacg taattccgcg tttttcggcc
    26461 tcacttttcg ccacattggt ttctgcggcg cgccagccgg attccgatcc gacctgcgaa
    26521 aatcctacgg ttaatggagc ggccaacgcc atagacgaca tggctgccga gactgcagag
    26581 actacaagta agcgtttcca catagggttg tcctcgtcgg ggtaattatt attggtgaaa
    26641 agatgttcgc gaaaaaacta tagacaattc gttatgtaac ggattgcgtt acatcacact
    26701 tcaaaaaagt aaataaaacg ttaatcacaa gtttgtaatc gctttcatct cactatgaaa
    26761 aatgcggcta cggttatgga ttttcctgct ctgtataccg tcttaaaact ggcgaaaaag
    26821 gaaaatgaag acgaaaacaa gcaaagacat tcggcgcgag ttggctataa tactcggcac
    26881 ttgtttgcca catattttta aaggaaacag acatgagctt actcaacgtc cctgcgggta
    26941 aagatctgcc ggaagacatc tacgttgtta ttgagatccc ggctaacgca gatccgatca
    27001 aatacgaaat cgacaaagag agcggcgcac tgttcgttga ccgcttcatg tccaccgcga
    27061 tgttctatcc gtgcaactac ggttacatca accacaccct gtctctggac ggtgacccgg
    27121 ttgacgtact ggtcccgact ccgtacccgc tgcagcctgg ttctgtgatc cgttgccgtc
    27181 cggttggcgt tctgaaaatg accgacgaag ccggtgaaga tgcgaaactg gttgcggttc
    27241 cgcacagcaa gctgagcaaa gaatacgatc acattaaaga cgtaaacgat ctgcctgaac
    27301 tgctgaaagc gcaaatcgct cacttcttcg agcactacaa agacctcgaa aaaggcaagt
    27361 gggtgaaagt tgaaggttgg gaaaacgcag aagccgctaa agctgaaatc gttgcttcct
    27421 tcgagcgcgc aaagaataaa taagttcttc tagcgcaata accctgaacg ccgggcttcg
    27481 gttagtaagg gtttttttat gcccgcgata aataaactct ctattccacc atcattattc
    27541 tcagcggttg caaggcttga acggtaagaa caagcaaacc cgaccaccat tttgctgttc
    27601 atagccactt gctggaagtt agccgacctc actcatactc accgttcaaa gcgtgccccc
    27661 gttttacccc tgcacatttg tgaacgccag cagagttttt tatgcgattg cagatatgga
    27721 aagcggctcg gagagaaaag caaaagatgg aaaagttaca aaaaaaaatc gcgagataca
    27781 tcgcataaaa caacgccacc cgaaggtggc gtgcttttat tattacttat ccctgtctaa
    27841 ccagtcgccg ctttcaatta gctttaatcc ctcgacgggt cgttgataaa cgtacatcca
    27901 tgcactcccg tacggcgtct gaatcaactg gcgcgcgtat tcaccgcccc tggtgcgcaa
    27961 ggcatcaagt tcggccagcg tggcgttgtc aatacgataa acttcaccgt gtaccgttcc
    28021 gttccccgga actgcgcctg gatagtggcc caggctatac aactggtagt tatcgatact
    28081 gaaatcgccc agtaactggg cattggtcat ccagtgactg ttgccttgtt tgtggcgtaa
    28141 actgccgtag acaaatattc gcattgctaa aactcgaact gatagagcaa atccagtgcc
    28201 tggtctacac cagacacggc ttccagatat agcttaggca tcaggcgata acgtaacgtg
    28261 agtgttgcta tagagtcaaa tatacccacg ccgtatttca cttgcagacc tggcaataca
    28321 tagccgctga ccactacctg ggaggagtcg cctactccct gggtgtcgag cgctaaattg
    28381 cttacgccaa acgtctcgcc gattttaccc acaatctggc cactttgcgc aacccccaga
    28441 ccaatcagca tcgaggtcat tgccgcactg tcgctctgat cgctctccag cccttgtcca
    28501 cgtagcaaat aagacaatgc agcttgttgc gacatcgccg ggtcagagaa gatctccgct
    28561 ttcggttcgt ccgccagacc agtgacgcga actccggcga ttacgtcgtc ttctgtagca
    28621 tccgggttac gaatagcttc aatattaaga tacggttgat ctggcggacc agagaacagt
    28681 agctcaccct tacgcacaat cagatcctga ccataggcat ggaagcgccc ttcagggatg
    28741 ttgatctgcc cgttcaggcc cagcccttgt ttgtcctgaa cgacgttaag atcgcccgtc
    28801 agccgcgctt tcaggccaaa ggcgtcaatg cgcacattgt tgccaacgtg gacaatcagg
    28861 ttactgttaa tcggaatcga cgccgttttc ggctcttccg gttgcaggtt atcgttaagc
    28921 atcaccacat cgctggagac gcctactgcg ctttccggca gatcgtgcac cacgatgcgc
    28981 gcccacggga catccacgcg accatcgagg gtaaacaggt ttggtgtagc ctcgaataca
    29041 acatctggcg atacatccat tcgtaccatc ggcggcacgg tgatccgcac tttactgcct
    29101 ttcgccgtta ctcgtgcccg ccagttttca atttggctcc agtcggcatc accgttcagg
    29161 tagatttcac cctgctgggt ccgtactgta ccggcaagcg tcgagcgcat accgttaaag
    29221 ttgaccgcaa gctggctcgg ctgcatatca aacggcataa agttgccgtc gatatccaca
    29281 cccgtaacct gaagctgacc aaacaactgc gggctttgca catcaccatc cagacgcaag
    29341 ttggcactca ccatccccgc tgctttttcc ccacgagtaa agatggggtt tatcatcgca
    29401 aggttgaagt tacggatatt gacgttgcca ccaagattac ggcggccttg cggatcggtc
    29461 accagcacct gtccatcaaa ctggccgtta ttggtcaggc ggatggtcca gcccaattcg
    29521 gcacggttgt tacgcaattc cgccgtcaga ttcagtgtct gaaacgccac cggcagcgcc
    29581 gcatcgttga cggtttgcgt tacctgcacg ttacgccccg aaagggtgat actgccctgc
    29641 ggcagcccct ctttcgtggt gtcccaggca acatccgctt tacccgtgaa gataccgctg
    29701 gcctgagtgg tttctggcat aaacggtttc agcatggcga agtcgaagcg gttgagattc
    29761 accaccgcac gcccttcggc ccccgcatcg atagtttgcg gcacgcacag ttccgcattc
    29821 gggttaagcc agcagtgtgg cccgatgctg attttttgct ccttattgcg gtaatccagc
    29881 gcaatatcgc gggtcagcga ccacgggccg accagcgtct ggaagcgggt attgctaaga
    29941 gttcccttcc agcgttcttc tttgcgatca aaacttcctg ccagattaag ctgcccggag
    30001 acaggctcgc cctgaatccg caactgtagc tcgtgctgct tttcgctgcc tttggcattc
    30061 agggtgacga ggttgatatt tacatccggc tgcgaaattt gctcaacgcg tacgtcgagt
    30121 ttcccggcga tctgatcggt ggatttaatg tcgccttcca cgcgaacctg cgtcacggaa
    30181 agttcctgcc agcgcaggcc gcgcgcggtg atatctgcca gtagttgtgg cgcttccacc
    30241 gtgccgcgta ctttcaccag ccctttcgct gtaccgccaa gccccggcag cgcgttatcc
    30301 agccccggcg cgttgatggt ggcatcaaga ttgagatctt ttacccccag ctcgcctttc
    30361 acttcggcac tgtttggccc cagttccaga tgaagcccag ggatcatcca ctgcatataa
    30421 ctgttgcctt tcagcgtgcc gtcaacgttc actttgttct gtttgacgtt accggtcagc
    30481 ttcagttctg gcacctccat ctgccaggtg ccgccgtaca ggctaccgcg ggttttaatc
    30541 aagccattga gtttcgacgg ccactccggg aactctttgg cggtgttaat gccattaagc
    30601 gttagctcac cgcgccaact aatggcctgc tgccagtcga gcaacgcctt gagttcagtt
    30661 ttcccttcca gcgccgcgac ggtgagtttg tcgagattga cctgctgttc attacctttg
    30721 gcatcaaggg taatggtggc tggcgggatc tcctgtccct tcactgccgt acgcatagag
    30781 agcgtgtaat cggtcatttt gccggtaagt ttcagtttca gatcatccgc ctgatactgc
    30841 ttctcaccag tgaacggcca gtaaagctgt ttgctgttca cttccacgtt gagcggcaat
    30901 ccggcttccg ccagtcgcgt ctgggcgcgt aaatccatat ccaccggacc ggaaagatta
    30961 acgccaatct ccagctgttc gcgcagcgcg ccgcccactt ttagcttcac tttttcacct
    31021 ttcaacggct ccacgttcag tgtgctgttg agggtgatat ccaccggcca gttgtctgac
    31081 agctgcgccg tgccgctggc gttgacgatc ccctggttgg aatcgatatc cagggcgtcc
    31141 agtttagtat tgccgtcaat gctgctcact ttcagcagca tggtgcgcac ggtgatgtcc
    31201 gtgtcgcccg tcacgcgtaa ctgctcgcct ttaaactctt caatgttcag gttaagcggc
    31261 aaatgcaagt cggtcatttc cggcaatacc gagcgagaaa agagatcttt cagcgtttcg
    31321 ccgagcggct tttcatccgg ctgcggattt tcaattttcg gttcgaccac ttcttcctgc
    31381 gccacttccg ccactttcgg cagagcaatc agcaggcctt tcagcgacgt cggtttcagg
    31441 gtcagggttt tctcctgcca gttcaggccg gaggtgaagt ccatcaccga caccgtggtg
    31501 tcatcaatct tgatgttgac gttgtccagc gccacccgtg tcagggtgat gggatacggc
    31561 gtggagagat ccagcggacc gctatcttcc tcttcttcaa cctgttcaga aggaggcatt
    31621 tttttactgt cgatgttgac ctgaatgtct ttcagcgcca ggtcattaat acaaacgcta
    31681 ctgttccaca ggcactcaag accgaccgcc agatgcagat tacccgcttt taccgccacg
    31741 cctggctgct cataacgaac gtcagacaag gtgagatcgc gccagccgcc ggtgaccttg
    31801 ccaatatcca gtcctggcac ccagcgatcc gccgctttaa atacaagatg caggccgctg
    31861 gtggtgccca ccagaaacgc caccgatccc agcaacagta agataacgat aaccacgccg
    31921 aggctgattt ttttccataa actcataatt ctggccccag accgatgtaa aactgtaacc
    31981 cgtgttcgtc tttatccgcg accggtacgg caaaatcgag tttgattggc ccgaccggcg
    32041 attcccagcg cacgccgacc ccggtaccgg ttttaaagtc gctgcggcga atatcgctta
    32101 ccgcttcgcc actatcgaca aacaccgcgc cccaccattt tccggtcacg ttgtactggt
    32161 attccagcga tccggttatc aacttcgagg cccctttcag gtcaccgttg gcgtatttcg
    32221 gggcgataga tttgtatttg tagccgcgaa tactgcgatc gcccccggcg aaaaaacgca
    32281 gatccggcgg tactttgtcg aaatcaccgg tttcaatcca gcccagcgtg ccgcgtgtaa
    32341 cgaaacgatg gcgatcgtac agtgtgcgga tccagacgtt ctgcgcctgg aaaacggaga
    32401 aatcgacatc tgagccccag gccgtgttgg agtagtcgat agagtagcgt tgcgagtcgc
    32461 cccaggttgg catcaggcca ccacgagaac gcgtgcggct aatcatcacc ccaggataaa
    32521 acagcatcgt ggtgttggta atttcaccct gagtaaagtg gtcgagactc cagcgcaggt
    32581 taatggcacg ctgccagccg ctggagagat cccagtagcg agaagccacc agcgtagtgg
    32641 agtcagattc ggtatcgttc aggtcagtgc gcttaaaacc gccctgcacc aaataatatt
    32701 gttccagtgg attcttcagc agcggcattt tatagctgaa gtcgagggtc tgttccggcg
    32761 cggaaatact ggtactggtg gtcaaactgt gaccgtatga gttcatccac ggctttttcc
    32821 acgtcgcttt cacgcgcggt cccacgtccg tagagtaacc gaccccggtt tcgatggtgt
    32881 tttctgttcg cggcgaaacc acgcccgtca atggtaatac tttcgtttcg cgcgctttat
    32941 caaattgtgg agccaccacc accgagttaa accagccggt agcagaaagt cggcggttca
    33001 gttccgccag atctttcgat tcatactcat cgccctcttt aaacggcacc agattttgca
    33061 ggtattcatc gcggatttgt gatccttcaa aggtcacatg cccaaagcgg taacgttcgc
    33121 cactgttata atcaatatcc cagaaggctt tatgcaggcc gagcgcaatg cccagctgcg
    33181 ctttggtaaa ttcgctatcg aaataacctt tacgcaacgc aatactggtt aaggactttt
    33241 tgaaattttc ataatcgccc tggttcagta cagtaccaat agccgggcga gtatcgagca
    33301 atttcaaata gtctttatcg gtccgcgcgc cgccgcgcaa taccacatcg gtgccgccaa
    33361 ttaacaccgg cacacctggc gtgactttgg cgatcaatac ctgccgccct ttctttggcg
    33421 gtggacggag atcaaattca atggtcggct ggtaataacc cagcgctttc agaccttcac
    33481 ggatggcatc atcgacgcgt gcgcgaaagc ggcggtctgg cgtcacttca tcactttcaa
    33541 tcgtagaaag ctgcgcacga acgttctttt ccagctgtcc cgataacccc tcgacctgta
    33601 gacggacgtt cgcggcgacg gcagatccgc ttaagcagag taagcttaca cagcataact
    33661 gtcggatata gcgcacattt tctcctgaat atcctttttt cctgcccctg gaacgccgtt
    33721 aaacggctta acaaaaatcc agtaatatgg attaaaaagc agactaaacc ccaaatattt
    33781 cttatgtttt actttagacc tattcacggt ggttattgtg tgcaaatacg cctcttgtta
    33841 caaccttaac cccaatgacc gattttcggg agagcgacac catgagttta tttgataaaa
    33901 agcatctggt ttcccccgcc gatgccctgc ctggacgtaa caccccgatg cccgtagcca
    33961 cgctgcatgc ggtcaacggt cactcaatga ccaatgtacc tgacggaatg gagattgcca
    34021 tttttgcgat gggttgtttc tggggtgtgg agagtctgtt ctggcagtta cccggcgttt
    34081 acagcaccgc cgcaggctat accggcggct atacgccaaa tccgacttat cgggaagtgt
    34141 gctccggtga tacgggtcat gccgaagcgg tacgcattgt ttacgatcct tccgtcatca
    34201 gctatgagca gttgctacag gtattttggg agaatcacga tcccgcccag ggaatgcgtc
    34261 agggcaatga ccacggcacg cagtatcgtt cagcgattta tccgctgacc ccagaacagg
    34321 atgccgcagc tcgcgccagt ctggaacgtt ttcaggcggc gatgcttgcc gccgatgacg
    34381 atcgtcacat caccacggaa atcgctaacg ccacaccgtt ttattatgcc gaagatgacc
    34441 accagcaata tctgcataaa aacccatatg gttactgtgg aattggcgga attggcgtct
    34501 gtctgccgcc ggaagcatag cgttacgggt acaaatgtag tttgttgata aagtgctctt
    34561 tgtctatgcc tgatgcggct taaacgactt accaggccta caaaatcgtc caaattcaat
    34621 atattgcaag gactgcgtag gcctgatcgg catagcgcat caggcagtat tgcatttatc
    34681 agcagtctga attttaaccc tctggcgact ttacagtacc ttacgctata ctagccactg
    34741 aaaatgccgg ttcactttct tcgaatcggc tttcaatgtg tatttcacac aaattaatca
    34801 actttccctt ccgaggatct ggcctgaaag gtcggataag atatgttaaa cagtatttta
    34861 gtcatactct gcttgatcgc tgtaagtgcg ttcttctcga tgtccgagat ctcgcttgcc
    34921 gcctcacgca aaatcaaact taaactgctg gctgatgaag gcaatataaa tgcccaacgc
    34981 gttctgaata tgcaggaaaa tcccggcatg ttctttaccg tggtccaaat cggtctgaac
    35041 gcagtggcga ttctcggcgg tatcgtcggt gatgcggcat tttctccagc ttttcacagc
    35101 ctgttctccc gctatatgtc ggcagagctc tctgagcaac tgagctttat tctctctttc
    35161 tcgttagtga ctggcatgtt tatcctgttt gcggatttaa ccccgaaacg catcggtatg
    35221 attgcgccag aagcggtggc tttgcgtatc atcaacccga tgcgcttctg cctgtacgtt
    35281 tgcaccccgc tggtgtggtt cttcaacggc ctggcgaaca tgatcttccg tattttcaaa
    35341 ctgccaatgg tacgtaaaga tgacatcact tctgatgaca tctacgcggt agtggaagcc
    35401 ggtgcgctgg cgggcgtgtt acgtaaacag gaacacgagc tgattgaaaa cgtctttgag
    35461 ctggaatccc gtaccgttcc gtcttcaatg acaccgcgtg aaaacgtgat ttggtttgat
    35521 ctccacgaag atgagcaaag cctgaagaat aaggtggcgg aacatccgca ctctaagttc
    35581 ctcgtctgta atgaagatat tgaccacatc atcggttatg tcgattctaa agacctgctg
    35641 aaccgcgtgc tggctaacca aagcctagca ctgaacagcg gcgtacaaat tcgcaacacg
    35701 ctgattgtgc cggatacgtt aaccctttca gaggcgttgg aaagttttaa aaccgcaggt
    35761 gaagacttcg cggtgatcat gaacgagtac gcgctggtgg tggggatcat caccctcaac
    35821 gacgtgatga ccacgctgat gggcgatctg gtcggtcagg ggctggaaga gcagattgtc
    35881 gcccgtgatg agaactcatg gctgattgac ggcggcaccc caattgacga cgtcatgcgc
    35941 gtgctggata ttgacgagtt cccgcagtcg ggcaactacg aaaccatcgg cggctttatg
    36001 atgtttatgc tgcgtaagat cccgaaacgc accgattcgg tgaaattcgc cggctacaaa
    36061 tttgaagtgg tggatatcga taactaccgc atcgaccagc tgctggtgac ccggatcgac
    36121 agcaaggcca ccgccctttc gccaaaactg cctgacgcta aagataaaga agaaagcgtc
    36181 gcgtaacccc cagaaacatc aacggctcct gaatcaggag ccgtcttatt actgcatagc
    36241 actttggtta agccatctct gtttgcagac gcataacctg acggttaact tcggacatca
    36301 ctgacaaatg cagcttatcc ttcacttttg ggataagaat cttaccctta tcaaattcaa
    36361 aagcgccaac gtccttgatg tataaccgtc cacggaacag gatctttacg tacttcgcca
    36421 cctgaagtgg gttgtaccgt tggaaaattt tcattgttat ctcctgctga gtattacgcc
    36481 tgtgcggtgc cacaatcggc ccaactatta tgagacgcaa attttaatgc ttagtgacta
    36541 tagactatcc gggcaatgtt tccaccgcgt ataacttttt ttacctaaag gttacaatta
    36601 ttcagaatta tctttttacc gaagcgcggt cttcagtata agcattcatt tttcatatga
    36661 tttgtgcgct tgaccgcaaa ctggcatcac acttgcggga aattcgataa atagcacata
    36721 tgattaaaac tcagatccaa gtggtcggat cacctgcata tcataagaag gaaacaccat
    36781 gaccctacgc aagattctgg cactcacctg cctgctgttg ccgatgatgg cttccgcaca
    36841 tcagttcgaa accggtcagc gagtgccgcc gattggcatt accgatcggg gcgagttggt
    36901 gcttgataaa gatcagttta gctacaaaac ctggaacagc gcgcagttag tgggaaaagt
    36961 gcgagtactg caacatattg ctggtcgcac ctctgcaaaa gagaaaaacg cgacgctgat
    37021 tgaagcgatt aaatcagcaa agttaccgca cgatcgttac cagaccacca ccattgttaa
    37081 caccgacgac gcaattccgg gttccggcat gtttgtgcgc agcagtctgg agagtaataa
    37141 aaagctttat ccctggtcgc agtttattgt cgatagcaat ggcgtcgcgc gcggtgcctg
    37201 gcagctggat gaagaaagtt ccgctgtagt ggtgctggat aaggatggtc gcgtgcaatg
    37261 ggccaaagac ggggcgctca cacaggaaga ggtgcagcaa gtgatggacc tgctgcaaaa
    37321 gttgctcaaa taatggcaat aacataaatt ctgcaaaaat aattttcccc tatcgttatc
    37381 tatgggatag gggaattagg tctctgagct cttacaccga actcatactg gtaacgctag
    37441 ttgctctttt ttaaacgcct caatggttga tttatatttc tcgcaaatct cctcttcggt
    37501 aatatcacta tctacggcca gattcgcact tactatcgca tccacttgtt cggctaattc
    37561 gacttgttgg caacctgcat taaccagaaa attataaata agagagtaat cttcatcctc
    37621 caaaacaaca gaggaaccat tacgaaaacg ttcatcccct ccatagattt taagcgcaaa
    37681 gcccaaagat tctatgacta tggcaaaatt atcatcaatt a
//
LOCUS       DADMHM010000015        36207 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.015, whole genome shotgun sequence.
ACCESSION   DADMHM010000015 DADMHM010000000
VERSION     DADMHM010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 36207)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 36207)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..36207
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.015"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            347..949
                     /locus_tag="JN125_000661"
     CDS             347..949
                     /locus_tag="JN125_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019842586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proQ/FINO family protein"
                     /protein_id="HAY8870533.1"
                     /translation="MGKNQEERKTPVIVVKKRRTFSPPSLSEKTDIIAPVFTEQTAES
                     APAGINSSAVETHIPEAPARKKKKKRHRFPRPSHWTREYTHECVEKIKALFPHLRAEG
                     GGFIPLKIGISNDISAFLAEHPETELTMDEWLCAVSCITSRRVYLQRTAVAGVPRYGL
                     DGHPKGQVSDSEAQSAGRRLATLEQKWLRTQAQQENISGQ"
     gene            1005..1499
                     /locus_tag="JN125_000662"
     CDS             1005..1499
                     /locus_tag="JN125_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001582574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870534.1"
                     /translation="MCDSEAEKILFILNKHERAYRRLIPVYIFLAIVLWILPILLIVY
                     LYFCIVDNEFLRIGFCIAWTAYYFLSLFKYFVKYFFPLDREDLLNLMDLAKDSPDAKQ
                     ELLERLLSGKRMTGRDEMDIKRILKTKEALDNIRNFIDKQQLTNSDTPKKSTVPNEDK
                     KGIR"
     gene            complement(2242..2715)
                     /locus_tag="JN125_000663"
     CDS             complement(2242..2715)
                     /locus_tag="JN125_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004118072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870535.1"
                     /translation="MRDKTREAMRLFLGGRCYTAEKLEKDYLAEVANYSNDRWEAPQR
                     ASRLAASVKRYKTSEMLRFIFATIAYDPDPDLTPLTVRRLCKALFGRTGSQWLVVEVF
                     GEKGRQHRSADSNPEMVEKMAARYRHAAELHWSATLAEIERVKRLYQTKIKKSKK"
     gene            complement(2832..3680)
                     /locus_tag="JN125_000664"
     CDS             complement(2832..3680)
                     /locus_tag="JN125_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001057990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HAY8870536.1"
                     /translation="MNNDELATRRAQAIAEDRCFSKGRLRDEFRMKPAPGAEPVKWYK
                     NTYGGRFAVYRIADCVPMREKRPLTSKQQLAGQRLSVLSRLNSTSGRMARQAYDWLSL
                     APLFLDTETTGLDNTAEALEIGLTDAAGQVVFETRLKPTVAIGAQAAAVHGISEQALC
                     GAPSWTDVARQLRHAIGDRPVIIFNARFDIRILKQTAAAHSDPADWLEELTVYCAMEL
                     AAGYYGATNRYGTISLACAASQAGLTWEGQAHSAIADARMTAGVVNAIAAYHLELLQE
                     QARLKI"
     gene            complement(3720..4001)
                     /locus_tag="JN125_000665"
     CDS             complement(3720..4001)
                     /locus_tag="JN125_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001585073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HAY8870537.1"
                     /translation="MMEIFWTMLASQDRKRIRKYIAEQNLMAAIELDERIGYSASSLA
                     GQPYKGRNGRVEGTRELVIHPHFVLVYEVDSQWGKVYILRVLHTAQKWP"
     gene            complement(3998..4267)
                     /locus_tag="JN125_000666"
     CDS             complement(3998..4267)
                     /locus_tag="JN125_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000079945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870538.1"
                     /translation="MAQVNMSLRIDAELKDAFMAAAKSMDRNGSQLIRDFMRQTVERQ
                     HNTWFRDQVEAGRQQLERGDVLPHDMVESSAAAWRDEMSRKVAGK"
     gene            complement(4322..4480)
                     /locus_tag="JN125_000667"
     CDS             complement(4322..4480)
                     /locus_tag="JN125_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001700046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870539.1"
                     /translation="MAESGYGLAGLGMGKVKSINQYRLTPGFGGFTPVSHVTTACRLP
                     CRWRGISW"
     gene            complement(5177..6208)
                     /locus_tag="JN125_000668"
     CDS             complement(5177..6208)
                     /locus_tag="JN125_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000907860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="HAY8870540.1"
                     /translation="MAGLKNTPYNAVHWSQLAPEEQIRFWEDYEAGRATTFLVEPERK
                     RTKRRRGEHSTKPKCENPSWYRPERYKALSGQLGHAYNRLVKKDPVTGEQSLRMHMSL
                     HPFYVQKRTYAGRKYAFRPEKQRLLDAIWPVLVSFSDAGTHTVGMSVSRLAREISPKD
                     SKGKVIPELEVTVSRLSRLLAEQVRFGVLGVSEETLWDRETRQRLPRYVWITPAGWQM
                     LGVDMVKLHEQQQKRLRESEIRQQLIREGVLREDEDISVHAARKRWYLQRSQDALKHR
                     REKAAASKRARRLKKLPADQQIHEMAEYLRKRLPPDEAYFCSDDHLKRLAIRELRQLE
                     LTLAAPPPH"
     gene            7181..7444
                     /locus_tag="JN125_000669"
     CDS             7181..7444
                     /locus_tag="JN125_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001387472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ash family protein"
                     /protein_id="HAY8870541.1"
                     /translation="MPYHKDRNLYFLSSSMVAQAGQALAWPVSDDAGIPTPVWAITNE
                     RRNSVIAFLVVIGDLCYVTSNDTETPGHHSVGRHVSRAINKPA"
     gene            7413..7649
                     /locus_tag="JN125_000670"
     CDS             7413..7649
                     /locus_tag="JN125_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000483804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraA"
                     /protein_id="HAY8870542.1"
                     /translation="MFPELSTNQLKVCVFYAMGVPYDAIAQNCRLSPETVRTYLKRSL
                     KNLNLEGYDALRSAVLMRTFVFMISNTAKENEKM"
     gene            8091..8624
                     /locus_tag="JN125_000671"
     CDS             8091..8624
                     /locus_tag="JN125_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001303319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor NusG"
                     /protein_id="HAY8870543.1"
                     /translation="MNIEHLNNRNWYLAQYNTAGKNRESLFSWLNEQNVVPWTPLITR
                     KIRRADSRCCYRERIFAIFPGYFFILANFDIQPVSALRRHSAFIDFVKFGGEIKPVNK
                     DIVDGLMKIYPDPVLNPGAREELNAASSIWLTKAQYQYLLRMENTLQPESRISLLLEL
                     VSNAEHHGFMERLVNIP"
     gene            8878..9561
                     /locus_tag="JN125_000672"
     CDS             8878..9561
                     /locus_tag="JN125_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraC"
                     /protein_id="HAY8870544.1"
                     /translation="MTTTEHPVRQLLWCALNALKTAQENHNITSETGLRHYLLEWLSG
                     ASRHPEFSSLPGEIMALKALTEKDRNIPIIGTLNTLFLSSATVGECPLFRFRAALGKL
                     QKAGWRTYVCPWPEMVFNESIERACSGKRHLLQLSRTEECFLPTGDMRAPVTLQLITP
                     LHRKTMQLLETAELIFSDEGFQVVRGYEHQFGIERRETLFHTLFIGLPSLPEDVWGAT
                     QEQTTITLH"
     gene            9733..9987
                     /locus_tag="JN125_000673"
     CDS             9733..9987
                     /locus_tag="JN125_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001136193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilI type IV pilus biogenesis protein"
                     /protein_id="HAY8870545.1"
                     /translation="MPQQHPGRLQILVVDAHCKRRLFSTKTPTDPDELARRFCTPDNC
                     LVVVLRDNRFLFRLERAPGSHCRWHKGSSSRHQHLQDWLS"
     gene            11034..12101
                     /gene="pilL"
                     /locus_tag="JN125_000674"
     CDS             11034..12101
                     /gene="pilL"
                     /locus_tag="JN125_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001360287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis lipoprotein PilL"
                     /protein_id="HAY8870546.1"
                     /translation="MKKNYLTLILPSLLSGCAGISGGNNVAPSDTPALVFVDGQISES
                     AGVLALTQQRLSPPKITPPPRVSVPETVKTAQPVSESRPLPSPTISQNFSRLIITGKP
                     GSTPVTLSPTARNRTVSQWIKTLLPEGWKFRQENAATPKLNTKLVSWSANDQWTRSLN
                     RLLEEQHLWGHLDWDNKTLTVTTSAAAPAQDTATTISPAAMVTTSTSPESSTTANSQN
                     KPRNPFRGNSVSPSTPAAIPTPTGSTVKSIPLMTGTPVKPVSQGKEWRAPAGTTLREN
                     IIKWAEETKCESMASTHWMVIWPLSVTDYRLDAPLMFRGSFESAMEQVFELYRTAQKP
                     LYAQASRMQCIITVSDTRDGR"
     gene            12101..12538
                     /gene="pilM"
                     /locus_tag="JN125_000675"
     CDS             12101..12538
                     /gene="pilM"
                     /locus_tag="JN125_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001744073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis protein PilM"
                     /protein_id="HAY8870547.1"
                     /translation="MGWLVMAVGLTILIITGSYQNQKMSETTNAQQYASASVWASQIL
                     MIANRINDIRYVSGQQDGVISSDKLALPVTPDSRIKHQLQQGRLWVWMPEQPGLVETL
                     RLKSRGSALIGIFQNGQLTWLSGTATGLTPPAGITAGSVVYVN"
     gene            12552..14234
                     /locus_tag="JN125_000676"
     CDS             12552..14234
                     /locus_tag="JN125_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001744074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilN family type IVB pilus formation outer
                     membrane protein"
                     /protein_id="HAY8870548.1"
                     /translation="MKKSHQRSMKLAVLPCMIAVALSISGCTFSEINKMQKKAQEDSA
                     HAREKVSALSARKSQALTWLDNQWINPVPVAQVSREKKQTAPACYITQARKGEITLQE
                     LGQRITAVCGIPVIITPDAANSTLEGGATRQMTGTLPAPDENGRLPLSSLGSTTMTTS
                     TQPLTLNNLMWQGDINGLLDLMASRSGLYWRMDNGRIVFYLTETRTYPLHMLNTKTSS
                     SSSVSSGSTSTMGATGGQDNSASGDATSSQSTTVGQEYDLYEDIRKTIEAMLTPEKGR
                     YWLSASSSTLTVTDTPAVQEAVTRYVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDW
                     NLVYKSLHSAGATLNNASGDFTGATSAGVSILDTATGNAAKFSGSSLLIKALSEQGDV
                     SVVTSQESTVTNLTPVPIQMADQTVYVAQSATTTTTDVGATTTLTPGMITTGFNMTLL
                     PLIQKTGNLQLQMNFNLSDPPTIRSFTSKDGNSYIEMPYTKLRSLSQKVNLKEGQSLV
                     VTGFDQNNTTTSKAGTFTPANPLFGGSQTGKNERSTLVIIITPTFPSGGNNG"
     gene            14227..15522
                     /gene="pilO2"
                     /locus_tag="JN125_000677"
     CDS             14227..15522
                     /gene="pilO2"
                     /locus_tag="JN125_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001682966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 4b pilus protein PilO2"
                     /protein_id="HAY8870549.1"
                     /translation="MADEDINPVVLLADPKVNHRVWAACLKWTPVVKKQRVPSHHKHK
                     YHVKPRRLTSLKVTVGSRNSRGKISRLTGTGILTRPERNHYFSLALAFCSWVRNGYGV
                     FRYSDKELLFLASINGQPAVMADLSGNDADVAQKVSLFLAMNEEPPEKWQVVSSLEHP
                     DNWESIITRLSSADLRRCKLTVGNRSKFTLPAVLFLVAAGAGTVFWMTQPEPDVGPTA
                     EEIAARARLQFKKPEPPPELPHPWASQPVISDFLKACADLRKPSPVALEGWKLTGGTC
                     TPETFTLIYERQPGGTIEGFLARSKEIFNVIPDFNLKDGARLASVTRLLPSLPRRDEA
                     VPAPSEQLMRVFTWFQKKQLTPAINEIAIPEPLPGNNGEPAPVQKWKEYQFSLSTPVN
                     PDALFPLFQDTGVRLSNIHFELNGGTFSYSSEGHIYASR"
     gene            15509..15961
                     /gene="pilP"
                     /locus_tag="JN125_000678"
     CDS             15509..15961
                     /gene="pilP"
                     /locus_tag="JN125_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001247331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus biogenesis protein PilP"
                     /protein_id="HAY8870550.1"
                     /translation="MRPGKSLIIPSIFFFSGFSFATTQPLVTIGELEAQQNRNILLQA
                     KVQGAQLQKQLEESDVNLSSETVSGFSGMTASLPSVSEQPTSKNRKELPVIMEINGKD
                     KRLHAVLRMADGRQTSVTTGSQLPGTSVTVKSISLSGVTLSDGTTLTF"
     gene            15972..17525
                     /gene="cpaF"
                     /locus_tag="JN125_000679"
     CDS             15972..17525
                     /gene="cpaF"
                     /locus_tag="JN125_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000362204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp pilus assembly complex ATPase component"
                     /protein_id="HAY8870551.1"
                     /translation="MDKYNLKDALLFISRGDTHEILIETNQRTRPDVQSNLQELLNLY
                     PDIIPKVVSLSELQEAGQDDENKGPKERIIHLKDLADVSESEKKVLSYFETARKLGAS
                     DIHFLISESIFKVRMRIFGELQTVDEDQPALGYSLCATAILSMADVTETSFFPQREQD
                     ARLSPQLMRKIGIFGARYSHRPTGDGLIAVMRLIPDDGDKVPTFKQLGFIPEQIRLLN
                     VMLRRPEGKIVLSGPTGSGKSTTLRSACRVYLDDNQGRHLLTIEDPLEGQILGATQTP
                     IICDKSDEEAVKLAWSRAISSAMRLDPDAIMEGEMRDLVSMMSTTYAAQTGHIVLTTL
                     HTNSALGIPERMITMGMNADLICDAQLLIGMISQRLVPTLCPSCRIPWEKRVPELSED
                     DRAYLERHCNKDSLCSTDNIWFRNPHGCSDCNHDVIINGRKRGEIGKGLTGRTVIAEV
                     IEPDNRLFQILKTRGKVAARKYWLENMHGISRVEHLLRRINEGLVDPLEADRIIPLDE
                     DERLSIDDA"
     gene            17538..18623
                     /locus_tag="JN125_000680"
     CDS             17538..18623
                     /locus_tag="JN125_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001208802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilR"
                     /protein_id="HAY8870552.1"
                     /translation="MREMNFSQRLRRFIVRKTFSAPYRVQFYEALRFLLENKQPLKTA
                     LEQMRDAWTDFGRKWHPFAELATDCIESLRENSGENSLEYTLGLWVPQEEAAVISAGI
                     RSGSIVDALQFATTLTDAKKQLHQAIWQMAIYPVGLLIMMTGTLYVLNTELIPVLSKI
                     SSPDSWSGALGFLYGLSLFVDNYGAICAVLFAVVTGVISWSLKNWKSRSLADNIMPWS
                     IYKDIQGAAFLLNMAALLKAKMTTLNSLNVLQDFASPWLSTRLDSIIYRVRQGDHLGL
                     ALRQCGYQFPSREAANFLSLLQGDGATELIGNYGQRWLVQTLERVKKRAAVVRLIMLI
                     FLVMSLLLLVMAVVDIQSIGDNSMGNL"
     gene            18640..19254
                     /locus_tag="JN125_000681"
     CDS             18640..19254
                     /locus_tag="JN125_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000908226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein PilX"
                     /protein_id="HAY8870553.1"
                     /translation="MLIQNIDVNALKKNEKETSHDKGWGIMEQGAIALVVIIVLALVF
                     GGLYMLRSRTGVANESSNIQTIITSTQGLLKGSDGYTFTSGTKMTGALIQMGGVPKTM
                     TVRGTPSSGTATLYNSWGGAVTVAPASTSGFNNGFTVTYEKVPQDACIQIATQISRTG
                     LTNGITLNSTTHNDGKVTTEEASAQCTADNGSTGTNKLIFTING"
     gene            19264..19824
                     /locus_tag="JN125_000682"
     CDS             19264..19824
                     /locus_tag="JN125_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001774171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HAY8870554.1"
                     /translation="MSGGKVPLRLISLILLCSLIYPARASYIAPKQIWTNKWDNCFAA
                     AGARYQIEPLLLKAISAGESSLKPGAININKDRKTGKASSTDYGLMQINSTHIPKLIK
                     MGVIKKSEDLITKPCLNIHIGSWILARHFQICGVSWNCLGSYNAGFRKDRHETREQYA
                     NKVWRIYRDMKGICLPGQGGRQCRQS"
     gene            19809..20465
                     /locus_tag="JN125_000683"
     CDS             19809..20465
                     /locus_tag="JN125_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001193550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HAY8870555.1"
                     /translation="MQTIVGISLSPVYILPLMFIFSIIGRTLLFRVRYFLSDTEHLWY
                     KTHTAVLSGIWLYSIAVALIILSPSQLLYRIHAVLILSFMLQMAVTDALTGLLPGTFT
                     RRFLIAGILSQITTDIWWLRATEIVSAAIVLFCLHKLVNRHRLNIGTGDLWLIAGITA
                     WSGLYNAIWSVLLGAGGFVLWHSTWCIKGHKEGPLGPWLCLGHVLLLLDNLYQPLWVI
                     "
     gene            20465..21757
                     /gene="pilV"
                     /locus_tag="JN125_000684"
     CDS             20465..21757
                     /gene="pilV"
                     /locus_tag="JN125_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012565250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shufflon system plasmid conjugative transfer
                     pilus tip adhesin PilV"
                     /protein_id="HAY8870556.1"
                     /translation="MKKYDRGWASLEIGAALLIVMIIVAWGAGIWQDYLKTKGWQAEA
                     RLVSNWASAARSYIGKNYTTLQASSTTSTPAVITTTMLKNTGFLSSGFIETNSEGQRL
                     QAYVVRNAQNPELLQAMVVSSGGTPYPVKALIQMAKDITTGLGGYIQDGKTATGALRS
                     WSVALSNYGAKSGNGHIAVLLSTDELSGAAEDTDRLYRFQVNGRPDLNKMHTAIDMGS
                     NNLNNIGAVNAQTGNFSGNVNGVNGTFSGQVKGNSGNFDVNVTAGGDIRSNNGWLITR
                     NSKGWLNETHGGGFYMSDGSWVRSVNNKGIYTGGQVKGGTVRADGRLYTGEYLQLERT
                     AVAGASCSPNGLVGRDNTGAILSCQSGTWGTIGGKLKVTQLSTTGYLGQFDFCAIARM
                     GNAEDAHYCQVVESPAGSRKWYKYEHKTGCIASCVTLN"
     gene            complement(21754..22002)
                     /locus_tag="JN125_000685"
     CDS             complement(21754..22002)
                     /locus_tag="JN125_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001349157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870557.1"
                     /translation="MFIYASGGNGGSAGGACANTSRLQGYVGGTLISVNASNNPAYGK
                     TAFISFAVPAGTSYQITSYPTENTSCGAGVFSVFGYQT"
     gene            complement(22137..22355)
                     /locus_tag="JN125_000686"
     CDS             complement(22137..22355)
                     /locus_tag="JN125_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001368220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shufflon protein D'"
                     /protein_id="HAY8870558.1"
                     /translation="MPTGFSASQCSWSVSNAENPQGWKPNYFAGSVATYDANRIVKCG
                     FYDEYNFHKGTFRADLTGKCSYVVACQN"
     gene            complement(22404..22490)
                     /locus_tag="JN125_000687"
                     /pseudo
     CDS             complement(22404..22490)
                     /locus_tag="JN125_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000958120.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="shufflon protein D'"
     gene            22489..23643
                     /locus_tag="JN125_000688"
     CDS             22489..23643
                     /locus_tag="JN125_000688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001396170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HAY8870559.1"
                     /translation="MPSPRIRKMSLSRALDKYLKTVSVHKKGHQQEFYRSNVIKRYPI
                     ALRNMDEITTVDIATYRDVRLAEINPRTGKPITGNTVRLELALLSSLFNIARVEWGTC
                     RTNPVELVRKPKVSSGRDRRLTSSEERRLSRYFREKNLMLYVIFHLALETAMRQGEIL
                     ALRWEHIDLRHGVAHLPETKNGHSRDVPLSRRARNFLQMMPVNLHGNVFDYTASGFKN
                     AWRIATQRLRIEDLHFHDLRHEAISRFFELGSLNVMEIAAISGHRSMNMLKRYTHLRA
                     WLLVSKLDARRRQTQKVAAWFVPYPAHITTIDEENGQKAHRIEIGDFDNLHVTATTKE
                     EAVHRASEVLLRTLAIAAQKGERVPSPGALPVNDPDYIMICPLNPGSTPL"
     gene            23794..24618
                     /locus_tag="JN125_000689"
     CDS             23794..24618
                     /locus_tag="JN125_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001238934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraE"
                     /protein_id="HAY8870560.1"
                     /translation="MRLNTTGIAARMMLSLDKKAIGEKLINGRQINPTPLQVRYPQGV
                     REVLGIMSEQLAISTADLTRILLEDALHNMFMPADNTTGNIISRIEYIMLSHDINAPL
                     LATLLSPWNIRSTVIQDPARLADYLSADALEHLAECFNLNPDWLNGHENYPIALSGEW
                     PDTADNFRMLINDSSNTEVIFWHSFPFAGNTKREYCGVILRQEKEINGSVIYPALSLS
                     PTLLNDEKRKWLTEYTTRQNTTMSLRRVTLRPGLAENLITGQILPVSLFNTSLLPW"
     gene            24704..25906
                     /locus_tag="JN125_000690"
     CDS             24704..25906
                     /locus_tag="JN125_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003557916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraF"
                     /protein_id="HAY8870561.1"
                     /translation="MMKKNHITRTIIASAVLFSFNAAAATSYFEARNDAMGGTGVASS
                     HYGVAPLANPALLTKHNSNDDFSLLLPSVGAQVADPNDVSNKADDVKDDWDLFDSAVD
                     NQHGVQQAAANLKHRLQEFRNINADAQVGVSAVAAMANDTLPFALMVKSYGTVSVNGK
                     VNDADLDYLDKVANGTITDVDKNALTSRAFGRAAVITDVGISFAKELETAGQKWSLGV
                     TPKYQRVDLFNYNVTVRDYDKDDFDGDKYHNTKNGFNADIGAYTDLNDNWTVGLVAQN
                     IIPRSIDTKVVNGFKETFKVRPQATAGVSWHNDLFTTALDVDLTPASGFTSDSKRQFA
                     SVGAEFNAWKWAQLRAGYRQNMASNSGSAFTAGVGISPFDVVHIDVSGLVGTDHDYGA
                     MAQLQFTF"
     gene            25966..26550
                     /locus_tag="JN125_000691"
     CDS             25966..26550
                     /locus_tag="JN125_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001542524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HAY8870562.1"
                     /translation="MMKPRSSYSKTAFILLFSVFLVAAVTKAKSSLPDITLEQAKEIN
                     ADNTVIFLFRHGERCDRSDMPCYSDKSGITITGTEKAQQEGIKFATIFSEYDIYSSNA
                     VRTIQTAKFFSGKEPVVMDSLSDCNNDLYKTLESIARESHKRNIVIMTHNHCLSFLAR
                     DRLGKKFKPAYLDALIMHYDGTRLILDGKYNKEA"
     gene            26945..27403
                     /gene="traH"
                     /locus_tag="JN125_000692"
     CDS             26945..27403
                     /gene="traH"
                     /locus_tag="JN125_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001079808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IncI1-type conjugal transfer lipoprotein TraH"
                     /protein_id="HAY8870563.1"
                     /translation="MNRIIPAGCLAALFLAGCNSPSQHTPVPRNYGAASDVAVTRHTQ
                     YTLWDKGVFSGQLPVSTGSHLLTANSDRLSFDWEGDAIELLNELARVRGMQFNYNGVR
                     LPLPVNLHVRDMTFSNTLRLIEAQTAWRATIHQYPGLLQVSFMQPENRKK"
     gene            27400..28218
                     /gene="traI"
                     /locus_tag="JN125_000693"
     CDS             27400..28218
                     /gene="traI"
                     /locus_tag="JN125_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000646098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IncI1-type conjugal transfer lipoprotein TraI"
                     /protein_id="HAY8870564.1"
                     /translation="MKALTSLLLPVILLTGCSSSPTISPGGVNTPPPDINAWLKPRSE
                     KPDSLSETRWKMLTDAGKTLGFRGGKAQRSWELIQALNARESTLNALYDFRPLISPEG
                     WLPPVIDEAQDVAHITPDQIRTSSRVWTIIRPERFVSNPPGWRDWLLRGLSTTATPGT
                     EGSVVPEDSVQRKVWETALRQGWQEGRQNADLTLEANQKTLTRDYRGMMLYSLLWRQG
                     MITRPDVSDQMQTVTGDGKKLVTGDRVRRLKNHAEFNLQKSHWRPLIGTEGGSR"
     gene            28215..29363
                     /gene="traJ"
                     /locus_tag="JN125_000694"
     CDS             28215..29363
                     /gene="traJ"
                     /locus_tag="JN125_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001480051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid transfer ATPase TraJ"
                     /protein_id="HAY8870565.1"
                     /translation="MNIPDEFGLFPFQRFTADELRHFFVWCAAHKVSDVDLTGGSPVS
                     VSRFGRRVRCSSATLPTTLMSSLIDELFGREVIPRVLAGNPVDRTIQINGDASGRYGL
                     KRGERIRLRSHLIQGTSGAEEKAISITMRVIPTEIPDILSMNIEPDLLEAMVCKSGLG
                     FVCGETGSGKSTLCSALYRYIMDNFPDAKIVTYEDPVEYILGNENDLLPPHQAEIGRD
                     VVSFAAGLRSAVRRNPEIIGVGEIRDNETADAAVQAGNTGHYCLSTMHTKSPGETLAR
                     LLGLFPPVIRDSMAWAVLSLLQFILVQVLVRTNDGGRKAVREYIVINDELRDNLSGMP
                     HAEWGHHIDAIIRQEKRRIRDQILEMYIRNEVDRREAILFIPPGELRS"
     gene            29360..29650
                     /locus_tag="JN125_000695"
     CDS             29360..29650
                     /locus_tag="JN125_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001542523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein"
                     /protein_id="HAY8870566.1"
                     /translation="MKREGFWRYATPPVNIQGVPLPFTMIYLFICPFPSETTFWICTG
                     IILFFVILDRSGWTVRTICTRIFSILRGAIASGRPWWYRHHTESPRDWTGLD"
     gene            29665..30216
                     /locus_tag="JN125_000696"
     CDS             29665..30216
                     /locus_tag="JN125_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001493807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D family protein"
                     /protein_id="HAY8870567.1"
                     /translation="MSGKKTIVTLLRVSLLACPLLFTTPSFAMIDTPSVKVGFSPEGS
                     ASALVLDTINSAESSIRMMAYSFTDPDVMHALAKAKKRGVDVRIVVDDKGNTNRASRE
                     AMKYINLLDIPLRTVDVFPIHHDKVIIVDGNTVETGSYNFSRAAARKNSENVVVLKNM
                     PDVAAQYLEHWQDRWNKGTDWRP"
     gene            30306..34070
                     /locus_tag="JN125_000697"
     CDS             30306..34070
                     /locus_tag="JN125_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001141546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HAY8870568.1"
                     /translation="MPSVSRYRTWLAVPADEIEDLKKAHPPMNGHTPVLWDKDHKLWF
                     ARPGADLSMLDRWLPRPQEVSMNGSDPVTEFAQVLENAGLVLKELPVMDGKIHRVPTA
                     GDKKGQKSGAYRGFLDGRPAGWYRDYRSADDSPVTWTFSGGEQTDPRARLHLKAHSMQ
                     RREDAERELKAQYNRQAAYARRYVSKWPQATAHEYLTRKGIQAAPGVRINDKNELVIP
                     FSNRNGAIRSYQRIPVTGGKDARILKDSEKTGNWFALGTPRNGQPVLFAEGYATAASL
                     HEATGLPVLMTVDAGNMIIVAEEARQKWKQSPFIFCADNDHARQVNKGIVSATKAAEL
                     TGGSVIFPAFTDAEKAQGLTDFNDLDASRGRAAFLHVINAQLEHIGVSTPNSNTPEIR
                     EALVIGNLVFTPVHTEEKTMTPTEYPETSPDTGHSHDQGPSLPSATQQVQPAASSGNI
                     ADETQPFTSHATENNGKDERHPDNVQAQTESSVVQDAPAESPASPESTTASAPDELAH
                     PAEPPEKVVSVATDKDWREFEAELSQPEKNELQQESGTSPEIPAPAAPAAPEDSPSSE
                     TMNESTEPSPSPDAVKEEMTVMTEPDDKQSTGISPDTPREEAVSHVTEDIPLQPEPFL
                     PESDGPEEYEDYSAYQELMNNENPEHLQENSDMPSQPDTGHVQADESELQATTATIEP
                     AVRDEPTPQQPVQSTSPSDNTSSFLDKARGLFTRKKTDSQAHENSDPTPSAETTTTPP
                     IPDSIVYAPERSDAPISLNMDEILKELDWEKRADRTVLYKLDGKPAFIDRVNRLEMVN
                     GASNDDRSVLAALAVATKFYGGVIELTGSDAFKQKAMQLIIEHNIDVRMKLPDQRAEL
                     EKLRKEMAVSKDAVVTHQPTPELNRNTPEQPAVPDPVQEKEATQSPASPAATESSTVS
                     TAPASSPTEPGKTADAAPGEEPPGKLRPGESVTAVLHNFGRAEYAPGKGESFFVELKN
                     RSGSKLYWGEQLESLVKNHQKGDVVTLTLQNREQFILPGEQKARFRNKWSMESVTNGI
                     SVSHDNPDKGQRIQAIPVETFMKVAAQISQGWPEEMKALRMPENVGSHLFIGEDRHPV
                     SAPQNANQVTEITSAAPDKLTPVLGSVDKDTRELNLLLVQSADEHLQGVVRLNGTLYP
                     ALATPSADNSQLVINALTDKGLRFAGYGEAVNHDADSTNRPAPELMQFHLKTREEPLF
                     AAVYTPEKQPDALYRNLGFEQSWQQWSNSQKPEDRQEKTLHQDLSHSPGR"
     gene            34088..34435
                     /locus_tag="JN125_000698"
     CDS             34088..34435
                     /locus_tag="JN125_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001629514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein"
                     /protein_id="HAY8870569.1"
                     /translation="MNMHKSLVAVLGLILISSTASAATCRAGSAAQAGSNTGYERARA
                     AADAWSQRENDVSSSLQSCLSRIKKISINLPQFPSLDDILSQLENQVCDAVVDKVNEK
                     LPGNIDPWKDYNL"
     gene            34432..35124
                     /locus_tag="JN125_000699"
     CDS             34432..35124
                     /locus_tag="JN125_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000138553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraM"
                     /protein_id="HAY8870570.1"
                     /translation="MTENTEPSSPSHPAPDPEILKSTIRAMKQSEQRANNVPALIKAL
                     LCTGTCLLISITGNAIQYWHSTNVEREYFATDNGRLVRLAPTSQPAWSQNDAMAFGSQ
                     ALATAFNLDFVHYRSQISSLSPRFSDEGFVGYVNALQASNILETIKKEKMNLTATTGA
                     GVLVRQGQMSDGVWFWTFQYPVRMRLVGQTTSKPEQSFVFEITIQRVDPRLKPSGMEI
                     RQMISRNAGPNS"
     gene            35135..36094
                     /gene="traN"
                     /locus_tag="JN125_000700"
     CDS             35135..36094
                     /gene="traN"
                     /locus_tag="JN125_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001191879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IncI1-type conjugal transfer protein TraN"
                     /protein_id="HAY8870571.1"
                     /translation="MQSRYLLSTLLLVCSAATSADNAGWQNARTPQTTNSASDHVQNA
                     SQNTGGVPATLVKGELPAPGQASPLVQDAARLDSELSADEIRSLRSLMADNERAINAP
                     ITSVVPRISSLTVNLSPGASLPLVRTAMNNLSVVTFTDINGSPWPQSDPPYNAAPKLF
                     DVQYNENMVTITPLRPWASGNISVYLKGLSVPVILNVTSGETDTPSSSQEMDSRLDLR
                     IPRQGPTSPVVSIPTDKIALHDATLQAFLDGIPPRDPSVKRLKFTGNVPDTTIWQHGD
                     DLLVRSRAMLRDEFEQTLSSADGTHLWKLPVTPLLNRPGNPGD"
BASE COUNT         9854 a         9058 c         8408 g         8887 t
ORIGIN      
        1 gcactcctta tgtacatgct taaacagtaa gtaaaatata caaagaaccc cccatgaaac
       61 aaaggcagag atgaactgtg cgccccgata tcttcttctg atatcctttc aaatgaattg
      121 tttttattta tatcatgaca acattaaagt gagagaatat atcaaccatg tttctgtcag
      181 ggttcagtag aatatcaatt cgactgtcac gccataactg taactacctc gagtataaat
      241 attcagagaa tggacttatt agccatgaaa aatcacctga tgggaaattt actaatttat
      301 ggattgtgat attattaaag agtaaaacca gccagccgag gtatttatgg gaaaaaatca
      361 ggaagaaagg aaaactcccg tcattgtggt gaaaaaacgt cgtacttttt cgccaccgtc
      421 cttatccgaa aaaacagata ttatcgcacc tgtatttact gaacagacgg cagaatcagc
      481 ccccgccgga ataaattcat ctgccgtcga aacacatatc cccgaagcgc cagccaggaa
      541 gaagaaaaag aaaagacacc gttttccacg tccctcccac tggacccgtg agtatactca
      601 cgagtgcgtg gaaaaaataa aggccctgtt tcctcatctt cgtgctgaag gtggtggatt
      661 tattcccctg aaaattggca taagcaatga tatttcggca tttctggcag aacacccgga
      721 gacagaactg accatggacg aatggctctg tgcagtgtcc tgcatcacat cccgccgcgt
      781 atatctgcag cggacagctg tcgccggcgt cccacgttat ggcctggatg gtcaccccaa
      841 agggcaggtc tcagactctg aagcacagag tgccggtcgc agactggcga cattagaaca
      901 aaagtggctc aggacgcagg cacagcagga gaatatttct gggcaataaa cactcctgat
      961 aacaggtgga cattacgtat cagaaaaaat gggaagagaa tgttatgtgt gattcagaag
     1021 cggagaagat tttattcatc ctgaataaac atgaacgggc atacagacgc ctgatccccg
     1081 tatatatttt tttagctata gtattatgga ttttacctat tctcctgatt gtatacctgt
     1141 atttctgtat agttgacaat gagtttctca gaatcggttt ctgtattgca tggacagcat
     1201 actactttct ttcgcttttc aagtattttg taaaatactt ctttcctctc gatcgtgaag
     1261 atttgcttaa cctgatggat ctcgccaaag attctcctga tgcgaaacag gagcttcttg
     1321 agcgtctttt gtccggaaaa agaatgaccg ggcgggatga aatggatatc aagcgcattc
     1381 taaaaacaaa ggaagcactt gataacatca ggaattttat tgataaacag cagttaacga
     1441 atagtgatac tccgaagaaa agcacggtcc caaatgaaga taaaaaaggc ataagatgat
     1501 gctcacagga aatggaataa acactgtaac tgtcaatgga aaagtgaaac acatcacaga
     1561 actggatgat ataacacttt gtttagagtg gacaaaacta cgagaggaaa acaatcgtct
     1621 ttatgaaatt aataaccagg caaacagagg atggcgtggt ttcatcctaa gattgatagg
     1681 ggttaacctg ccagataaaa ggactgagtt tacacaacgt ctcttattga cgcgcaaaat
     1741 ttcgggttcg gtcatgaaaa agtaacaaaa ccgcgcaaca gacataaata tgacagtagc
     1801 catgaaaaag cagagagaga cagggtgata cagaaaagta actatttttt agctatagta
     1861 ttattggttt tacctatttt tgtgatttta tttctgtata tttgacaatg agtctctcag
     1921 aatcggtttc tcgaagtgac gagcgatcag aatggagaca aataaattcg ggaaacgaac
     1981 cttcacggta agttttgtca catttatcat ccctaaacat gagaattatc accaaaacta
     2041 accacccaac caacagcagc gccgggagca gcattataaa atcatgtaca gagttgcgtg
     2101 acgacatgat aagttctcat tctcaatatg ttctttacca gattatacca gtgatacttt
     2161 aacgcaccat cattaatgct aatgtatgca tacattaaca ttaatgatga aggagaagaa
     2221 caacaatggc agtcaaccca cttatttttt ggatttctta attttcgtct gataaagccg
     2281 ctttacccgt tcaatttctg ccagcgttgc ggaccagtgt agttcggcgg catgacgata
     2341 tctggcagcc attttttcca ccatctccgg attgctgtcc gcgctgcggt gctgacgccc
     2401 cttctcccca aaaacttcaa caaccagcca ctggcttccg gttctgccga acaatgcctt
     2461 gcacaaacgt ctcacagtta gcggggttaa atctggatcg ggatcgtagg caatggtagc
     2521 aaaaataaag cgcagcattt ctgatgtctt gtaacgcttt acgctggcag ccaggcgtga
     2581 ggcacgttgc ggtgcttccc agcggtcgtt actgtaatta gccacttcag ccagataatc
     2641 cttttcaagt ttttcagccg tgtagcacct gccgcctaaa aaaagccgca tggcctccct
     2701 ggttttgtct ctcacatatc atccctcatt aatgctaatg tacacataca ttagcattaa
     2761 catgctgaca gcaacaagcg gcggatttac gtctggataa cgtaaatgat tgcggtatac
     2821 aggccaggcg gtcagatttt cagccgtgcc tgttcctgca gcagttccag atgatatgca
     2881 gcaatagcgt ttaccacccc tgccgtcatc cgtgcgtcgg cgatcgctga gtgtgcctgc
     2941 ccttcccagg tcagtccggc ctgactggca gcacaggcca gtgaaatcgt gccatagcgg
     3001 ttggtggccc cataatatcc tgcagccagc tccatcgcac aatataccgt cagttcttcc
     3061 agccagtcag ccggatcgct atgtgcggca gcagtctgtt tcagaatgcg gatgtcgaac
     3121 cgggcattaa agataattac tggtcggtcc ccgattgcat gacgcagttg ccgcgccaca
     3181 tctgtccatg atggtgcgcc gcagagagcc tgctcgctga taccatgcac agcggcggcc
     3241 tgcgccccga tggcgaccgt gggcttcagc ctggtttcaa ataccacctg accggccgca
     3301 tcggtcaggc cgatttccag ggcttccgcg gtattatcca gtcctgtcgt ttcagtatcc
     3361 agaaagagcg gtgccagact cagccagtca tatgcctgcc gtgccatccg gccactggtg
     3421 ctgttaagtc tggataaaac ggaaagtcgc tggccagcca gctgttgttt actcgtcaga
     3481 gggcgtttct cacgcatcgg aacacagtct gcaattcggt atacagcgaa cctgccacca
     3541 taagtgtttt tataccactt aaccggctca gcaccggggg ctggtttcat tctgaattca
     3601 tcgcgcaaac gtcctttcga gaaacacctg tcttcggcaa tcgcctgcgc acgtctggtg
     3661 gccagctcat cattattcat ggttattgca tctcctttcc ttatatccgg acagcccctc
     3721 tatggccact tctgtgcagt atgcaacacg cgcaggatat acacttttcc ccactggctg
     3781 tcgacctcat aaaccagaac aaaatgcggg tgaataacca gttcccgggt accttccaca
     3841 cgaccgttgc ggcctttata cggctgcccg gccaggctgc tggctgaata accaatccgt
     3901 tcgtccagtt caatggcggc catcaggttc tgctccgcaa tgtacttacg aatgcgcttc
     3961 ctgtcctggc tggccagcat ggtccagaat atctccatca tttaccggca accttcctgc
     4021 tcatttcatc ccgccatgca gcagcggaag attcgaccat gtcatgggga agcacatcgc
     4081 cgcgctcgag ttgctgacgt cctgcctcaa cctggtcacg gaaccaggta ttatgctgcc
     4141 gttcaacggt ctggcgcata aaatcccgaa ttaactgaga gccattacgg tccatgcttt
     4201 ttgcagcggc cataaaagca tccttcagtt cagcgtcgat tcttaaactc atattaacct
     4261 gtgccattta tcacctcgtc attactacgt atatacacag tatataacga ttcagatatc
     4321 gtcaccagga tatgccgcgc cagcggcatg gaaggcggca cgctgtggtt acatgtgata
     4381 ccggagtaaa accgccgaag cccggcgtca gccggtactg attgatagat ttcaccttac
     4441 ccatccccag ccctgctaag ccatacccgc tttcagccat gagacagttt ctgtgcgcgg
     4501 tcggagtggt cccgacgagg gtttacccga agtcggggcg tatctccgcg ttagcgggcc
     4561 gtcagggccg cttacgagcg tgtactgaga acatccagcc agaagactgg cagcgatgat
     4621 aatgtagtta caacattcat aattaaaagc gatgttgttc ccgccctttg ggcgggggcg
     4681 gcctcgcttt tcagttatga ggggtgggca cggtgctgca tttatgtggt gtttttattc
     4741 ctgatgtttt tttgctgtgg tctcagaacg gtgaggttcc ggggcccgcg cgtcagcgtg
     4801 ggaggtgctt ttagattctg agcggcgcgg ccttggccgc tgcaagcgaa ggcctctttg
     4861 tatttattca cagtggtttc agagataaag actttccctg cggcgaagca acgcagggga
     4921 ttaaataatg gggttaagac tatattgcag gtttgctgtt ttaggtttgc ggcttcttaa
     4981 agttctttgt ttgcggattt atgtggataa ctgaaacaac gtggccacgt tctgatgact
     5041 gatgcgtggt tttatgggca gatatgcccc tctgagggga tttaaggtga ttactgcgga
     5101 ttttgggctg agtggaacca gcgccgaaag ccccggaggg gctggcgatg attcagtgct
     5161 gaaggaatgg tgctgtctag tgcggcggtg gcgcagccag cgtcagttca agctgacgca
     5221 actccctgat ggccagtcgc ttcagatggt catcggaaca aaaataggct tcatccggcg
     5281 gcagacgctt cctgagatac tctgccatct catgaatctg ctggtcggca ggcagtttct
     5341 tcaggcgtct ggcgcgctta ctggctgccg ctttttcacg acggtgtttc agtgcatcct
     5401 ggctgcgctg cagataccag cgttttctgg ccgcatgtac ggagatatct tcatcctcac
     5461 gcagaacacc ttcccgaatg agctgctggc ggatttcact ttcacgcagt cgtttctgct
     5521 gctgttcgtg aagttttacc atgtcgacgc ccagcatctg ccagcctgcc ggtgttatcc
     5581 agacgtaacg tggcagacgc tggcgggttt cacggtccca cagggtttcc tctgaaacac
     5641 ccagcacacc aaaacgtacc tgttcggcca gcaaacggga aaggcgggag accgtcactt
     5701 ccagttccgg aataaccttc cccttgctgt ctttcgggct gatttctctg gccagacggg
     5761 aaacactcat gcctacggta tgtgtgcccg catcactgaa gctgaccaga accggccaga
     5821 tggcatcgag gaggcgttgt ttttccggac ggaaagcata tttgcgaccg gcatacgttc
     5881 gtttctgcac gtaaaaagga tgcagagaca tgtgcatgcg caggctctgc tcgccggtca
     5941 ccgggtcctt tttcaccaga cggttgtagg cgtgcccgag ctgcccgctc agcgccttat
     6001 agcgctcagg acgataccag gacggatttt cgcatttggg tttggtggag tgctcaccgc
     6061 gacgacgctt cgtgcgcttc ctttccggtt caaccaggaa agtggtcgcc cttcccgctt
     6121 catagtcttc ccagaaacgg atctgctctt cgggtgctaa ctgactccag tgtactgcgt
     6181 tatatggagt attcttcaga cctgccacaa gctgtcgctt atggcggagc gattgtgccg
     6241 tgtatttata cactgcacag ggttgaatct ctggtacggt ttcattatac tttacccgta
     6301 ttctgtgagg cccccactat ctttcgtcgt tccgccaagt tcgtaagaaa gatagtgggg
     6361 gttttccttt tatggcttcc ggagcatctt cagtcttctg acttactgcc cgtacatgcc
     6421 atctctcctg aatgccttat ggtgcattct accgtccggc tttcgccgct ttgctccaca
     6481 gagtgccacc ctctgcacag ctaataacag ccgaaatata cccgctttac gttaatttga
     6541 aaagcattac aacgatctct tctcttccag tgcctcctca ccgatacctc taatgagtta
     6601 atcttgacct gcgtcaaaaa aataaaatct atttttaaaa gcagattttt ctgctttaga
     6661 tccttctttt ggattaaaag atcgactttt gttctactca cgatcattta tcttacaacc
     6721 gatcaaccta acagaataat attctgtttt aagacaatta aacgatctaa aaaaccttta
     6781 aaaaatcatt ttgtagatca ttcgatcgta aatagaatga ttcttagata ataaaaccat
     6841 ttgttacaca acccgccaat tgtgtaacaa cagcctctac aagagcatat ttgttcatat
     6901 gttcgtcaga actgcggatt gtctggacga gggtcagaca ccgtttcgtg catatggacc
     6961 agcatgttcg aacgccacaa agcagaagca tcatgcctgg atcgcttcgg cgcggagcgt
     7021 taagttttga cgcttttttg tatgtttttt aagcggttag ttgactcggt acgttatact
     7081 aagtaccctt tactggtcac aggcaaaact gtgatcgggc gtaggaaccc gcgtagtcat
     7141 cgtcggcgca gaagttaatt tcttcatttg gcgtcgtttt ttgccatacc ataaagacag
     7201 gaacttgtat ttcttgtcgt catctatggt agctcaggcg gggcaggcat tagcctggcc
     7261 ggtttccgat gacgccggta ttcctacccc cgtctgggct atcaccaatg agcgtaggaa
     7321 ctcggtgata gcgtttttag ttgtcatcgg agacctttgc tatgtcacct caaatgatac
     7381 agaaactccc ggccatcact ctgttggaag gcatgtttcc cgagctatca acaaaccagc
     7441 ttaaagtctg cgttttttac gcaatgggtg ttccttacga cgccattgct cagaactgtc
     7501 ggctttctcc cgaaacggta cgaacctacc tgaagcgaag cctgaagaac ttaaatctgg
     7561 aaggatatga tgcacttcgc tctgctgtgc tgatgcgaac gttcgttttc atgattagca
     7621 atacagctaa agaaaacgaa aaaatgtgaa caggtgtccc cattaaaggg gacactttca
     7681 tggaaattgc attttgcact ttacaggcgc tcccaaattg ataaacataa acaccaagca
     7741 caagttactt taataaagca aatcacttca gacggtgtcc caattatttg tatctggctc
     7801 atgcccgata tatggcgacc ttactctgaa ctgacgtgct gatgttttat ttcgcgtatc
     7861 acaatactgt gccactgtat tgctgatatt agtgcttagc cgttctttat ctgtgagttc
     7921 gccaaatcac cgatacagaa cgtactagag tctgctggtt atatgcctgt cagaactgca
     7981 gtttctccag atatgggctg gacactgctt cagacatatg atctagcata ttcgcctgac
     8041 atcgcaaaat cgtccatcat ggatcggttt tgcgcggagc gttgaacttc gtgaatatag
     8101 aacacctgaa taaccggaac tggtatcttg cgcaatataa tacagccggc aaaaacagag
     8161 aatctttatt ctcatggcta aatgagcaaa acgtcgtacc atggactcca ttaataacaa
     8221 gaaagataag acgggcagac tccaggtgct gttaccgtga aagaatattc gctatttttc
     8281 cagggtactt ttttattctg gctaattttg acattcaacc agtatcggca ttacgtcgcc
     8341 atagcgcctt cattgatttc gtgaagtttg gcggtgaaat aaaacccgtc aataaagata
     8401 ttgtagatgg attaatgaag atttacccgg accctgtgct aaatccggga gccagggaag
     8461 agctgaatgc ggcttccagc atatggctga caaaagcaca atatcagtat ctcctcagaa
     8521 tggaaaatac tctccagcct gagtcgagga tatccctgct cctggaactg gtatcaaatg
     8581 ccgaacatca cggctttatg gagcgccttg taaacatccc atagccagta tttcccggcc
     8641 ttcgggccgg gcttttttca attcaagaga atattccgga gtgaagcctg cacgaagcca
     8701 tccccaccat ggactccccc tgtcttttga tggaaccgtg tatttcttaa tggcgaaaga
     8761 aataaaaggc ttcaccccag agtattgatt cgttttatca aaggccggcc cgtgccatca
     8821 cgtgtggcgg agagaacgga taccggtctt cttttcatct cacagtagga cattcgcatg
     8881 accacgacag aacatcccgt gcgccagttg ctctggtgtg cactgaatgc cctgaaaacg
     8941 gcacaggaaa accacaatat aaccagtgaa accggattac ggcattacct gcttgaatgg
     9001 ctttctggtg ccagcagaca tcctgagttc agtagtctcc ctggcgaaat catggcgtta
     9061 aaagcattga ccgaaaaaga tcgcaatatt cccatcatcg gaacgctgaa tacgctcttt
     9121 ctcagctctg ccactgtcgg ggaatgtccg ttgtttcgtt ttcgggctgc gctgggtaaa
     9181 ttacagaaag caggctggcg cacttatgtc tgcccatggc ctgagatggt gttcaatgaa
     9241 tccattgaac gggcctgttc cgggaaacgc catctgctac aactaagtcg caccgaagag
     9301 tgttttctac cgacaggcga tatgagggca ccagttacgt tgcagctgat cactccacta
     9361 caccgcaaaa ctatgcagct tctggaaacg gcagagttaa tattctccga cgaaggattt
     9421 caggtggtga gaggatacga acatcaattc gggatcgaac gcagagaaac cctctttcac
     9481 accctattta tcgggctgcc cagcttgcca gaagatgtct ggggtgcaac acaggagcag
     9541 acgactatca cattacactg aggatgtgta atccccggca taccccgttt ccagtcttcg
     9601 cagcctgtac cgcccttcct gccgtttccg acattctttc tgtcactact cgcttgtgcc
     9661 gttttttcgc aaccggtacg tgcagttatg acggtacagc tgcttctttt cccgttccgg
     9721 aaggagtctt tgatgccaca gcaacatccc ggacgactgc aaatactggt cgtcgacgca
     9781 cactgcaaac gcaggctgtt ttcaacgaaa acaccgacag accccgatga gcttgcccga
     9841 cgtttctgca cgccggataa ctgtctcgtg gtggtactac gcgacaaccg atttctgttc
     9901 cgactggagc gtgctcccgg cagccactgc cgctggcaca agggcagcag ctcccgccat
     9961 cagcatctac aggactggct atcatgaacg caaccgaagc aaaatgttta ttcaatggtg
    10021 tgtgatgatc aggaactgca tttttttgtt ccaaagaatt aaacagttaa tcctccttag
    10081 tctgttattt tagtcgcctg cctcagccaa catgaaaaat aataacgcac cattatatct
    10141 ctggttgctt tggtgtacgc tttgtctgta catcactacc ccatggcaat acttacgtta
    10201 tccatacact gacaacttat cattgcctta tatgttatat ttctgtgtgg tggttgtgat
    10261 ttgcattttc ccactacttt tcagatgtgt acttcttatt gtaaggtctg catctaaata
    10321 cgacttcaca ttctttgtga agaagaaaaa gggaagcaag aaatcaacta tacatcttag
    10381 cccctatgct gacacacgtt gcccgaagtc aatgaggaaa cactgggatg tattgctttc
    10441 tctgatatca aaagcaatta ataatgatga aatcattgtc atgcattcac atctctttac
    10501 tccagcaaga ataaataaac ttttaaagag actggaatct tatgatttga gtttttcagt
    10561 tattacatac ccacggaaaa caagtctgta cgaaaaatta tcaattcctt ttatatatct
    10621 cttgtttcag tggtctttcc cgcatttgca ttcggacgga atgacagtcg tcattcgtcc
    10681 tctccagacc caccacacca attaaaaaat acatttagat ataaaaagaa tgctcataag
    10741 caggattttt attttcacaa aaaatcccaa aacactggct taattggcta tccacaacct
    10801 cacctttaaa ataacatgca acattaaaat tcaaaagata gaataatgaa aatactaatc
    10861 aacaatatta aagacccaag cagacttctg aatgcgacta aaacgggaca ttcaggagta
    10921 attctctcaa taccggtata cattacccat ccaattgcac ataaaataat gaacccttac
    10981 ttaaagcccg cattaactaa caaacacgta tatacgaaca cggagtctcc gttatgaaaa
    11041 aaaactatct gacacttata ctgccgtcat tattgtccgg ctgtgccgga atttccggcg
    11101 gcaataacgt ggcaccatca gatacgcctg ctctggtttt tgttgacgga caaatcagtg
    11161 agagtgctgg cgtcctggca cttacgcaac aacgactttc tccacctaaa ataactccgc
    11221 ccccgagagt cagcgtgcca gagacagtaa aaacagcaca gccagtaagc gaatcccgac
    11281 cgttaccttc accaacaata agtcagaatt tctcccggtt aatcattaca ggcaagcctg
    11341 gtagcacccc tgtaacacta tcgccgacgg cccgtaaccg gaccgtcagt cagtggataa
    11401 aaacattact accggaagga tggaaattca gacaagagaa tgcagccacg cccaaactga
    11461 ataccaaact ggtttcatgg tctgccaatg atcagtggac ccgttctctg aaccggttgc
    11521 tggaagaaca acacctctgg ggccatctgg actgggataa taaaacgttg accgtcacaa
    11581 catcggctgc tgcaccggca caggacacgg caaccactat ctcgccagca gccatggtaa
    11641 ccacatccac ttccccggag tcttcaacga cagcaaatag ccagaacaaa ccacgaaacc
    11701 cattcagggg aaacagcgta tctccgtcta cgcccgcagc aatcccgact ccgaccggct
    11761 ctacagtcaa gtctatccca ctcatgaccg ggacacctgt caaaccggta tctcagggta
    11821 aagagtggcg tgcgccggca ggcactacat taagggaaaa cattattaag tgggcagaag
    11881 aaacaaaatg cgaaagcatg gcatcaacgc actggatggt catatggcca ctttctgtaa
    11941 ccgattaccg tcttgatgcg cctttgatgt tccggggatc atttgaatca gccatggagc
    12001 aggtatttga gttatatcgg actgcgcaaa aacctttata cgcacaggct tctcgcatgc
    12061 agtgcatcat tacagtttct gatacaaggg atggtcgcta atgggatggc tggtcatggc
    12121 cgtcggcctg accattctga ttatcactgg tagctaccag aatcagaaga tgtctgaaac
    12181 cacaaacgcc cagcaatatg caagtgcgtc tgtatgggca agtcagatac taatgattgc
    12241 taacagaatc aatgatatca gatacgtatc aggccagcag gacggagtaa tttcctcaga
    12301 taaactggct ctccctgtca ctccggactc ccgaattaaa catcagttac aacaggggcg
    12361 tctgtgggta tggatgcctg aacaaccagg acttgttgaa actttgcgtt taaaaagtcg
    12421 tggttctgca ctaataggga tcttccaaaa cgggcaactc acctggctat caggaactgc
    12481 aaccggtctg acacccccgg caggcattac tgctggttct gtcgtctacg ttaactaatc
    12541 tggatatatt catgaaaaaa tcacaccagc gttcaatgaa gctggcggtg ctcccctgca
    12601 tgatcgccgt cgctctttcc atctccggat gtactttcag cgaaatcaac aaaatgcaga
    12661 aaaaagcaca ggaagactca gcacatgcac gggaaaaggt atcagccctt tcggcccgta
    12721 aatcgcaggc tcttacctgg ctcgataatc aatggataaa ccctgttccg gtcgctcagg
    12781 tatcaagaga gaaaaaacaa acagctccag cctgctacat cacgcaggca agaaaaggag
    12841 agatcactct gcaggaactg gggcaacgta ttactgccgt atgcggcatc cctgtgatca
    12901 tcacgcctga cgcagccaat tcaactcttg aaggaggcgc tacccgccag atgacaggaa
    12961 cactaccagc accagatgaa aatggacgtc taccgttaag cagcctgggc agcacaacaa
    13021 tgactacctc cactcagcca ttaacgctga ataacctcat gtggcaggga gatatcaatg
    13081 gtcttctgga tctgatggcc agccggagtg gtctgtactg gcgcatggat aatggtcgga
    13141 ttgtattcta tctgactgaa accagaacgt atccacttca tatgctgaac accaaaacca
    13201 gcagcagttc cagtgtcagc tctggctcaa caagcacaat gggggcaaca ggaggccagg
    13261 ataactcagc atccggtgat gcaacgtcct ctcagagcac aaccgttggt caggaatacg
    13321 atctgtatga agatatccgg aaaactattg aagcaatgct gacaccagaa aaaggccgtt
    13381 actggttatc tgcatcgagc tcaacgctga cagtcactga tactccagct gtccaggaag
    13441 ccgtcacacg atatgtagac gaacaaaaca gtattatgaa ccgccaggta gccctgaacg
    13501 tacaggttct gagcgtcagc aataccagaa acgaacagtt cggtctggac tggaaccttg
    13561 tttataaatc gctacattcc gccggagcaa cgttgaacaa tgcaagcgga gattttacag
    13621 gcgctacatc tgcaggcgta tcaattctgg atacggcaac agggaatgcc gccaaattca
    13681 gcggttccag ccttctgatt aaagcactga gtgaacaagg cgatgtcagc gttgtaactt
    13741 cacaagaaag cactgtcaca aacctgacgc cggtacctat ccagatggca gatcagacag
    13801 tttacgtcgc ccagtcagca acaactacga ctacggatgt aggagcaaca acaacattaa
    13861 caccgggcat gatcaccact ggattcaata tgaccctgct gcctttaatt cagaaaacag
    13921 gcaatctcca gttgcagatg aactttaatc tgtctgatcc cccaactatc cgtagcttta
    13981 cgtcaaaaga cggaaacagt tacatcgaaa tgccatatac caaactgcgt tcactgagcc
    14041 agaaggtcaa tctgaaagaa gggcaatcac ttgtcgttac tggtttcgat cagaacaata
    14101 cgacgacaag taaagccggt acatttacgc cagcaaatcc attatttggt ggttcacaaa
    14161 ccgggaaaaa tgaacgcagc acgcttgtga tcatcattac cccgactttc ccgtcaggag
    14221 gcaataatgg ctgatgaaga tatcaacccg gtagtgcttc tcgcagatcc taaagtaaat
    14281 catcgcgtgt gggctgcctg tcttaaatgg actcctgtcg taaaaaaaca gcgcgtcccc
    14341 tcacatcata aacacaagta tcatgtaaaa cccagacggc ttacctccct gaaagtgact
    14401 gtaggcagca gaaattcccg tggaaagatc agccgcctta ccggcacagg aatactgacc
    14461 aggccagaac gcaatcatta tttttccctg gcactggctt tctgctcatg ggtcagaaat
    14521 ggatacggtg tcttccggta cagcgataag gagctcttat tccttgcttc cattaatggc
    14581 cagcctgccg ttatggctga cttatcagga aatgatgccg atgttgccca aaaggtcagc
    14641 ctttttctgg cgatgaacga agagcccccc gaaaaatggc aggttgtatc gtctctggaa
    14701 catcctgata actgggaaag tattattacc cggttatcat cagcagacct ccgccgttgc
    14761 aaacttactg tcggcaatcg cagcaaattc acactgcctg ccgtactgtt tttagtagca
    14821 gccggcgcag gcacagtatt ctggatgact cagccagagc ctgatgtcgg accgaccgcc
    14881 gaggagatag ctgcacgggc aagattacag tttaaaaagc ccgaaccacc accggagctc
    14941 ccgcatccat gggcgtcaca acctgtaatc agtgattttc tgaaagcctg cgcggacctt
    15001 cgaaaaccat caccggtcgc gctagaaggc tggaaactta ccggtggaac atgtactccc
    15061 gagacattca cactgattta cgaacgacag ccaggaggaa ctattgaagg ctttctggca
    15121 agaagcaaag aaatctttaa tgttattcct gactttaacc ttaaagatgg tgcacgcctg
    15181 gcttctgtaa cccggctact gccttccctg ccccgcaggg atgaggcagt ccctgccccc
    15241 tcagaacaac tgatgcgggt gttcacatgg tttcagaaaa aacagttaac gccggccatt
    15301 aatgaaatag ccataccgga accattacca ggtaacaatg gtgaaccagc ccctgttcag
    15361 aaatggaaag aatatcagtt cagtttatca acgcctgtaa atcctgatgc gttgttccct
    15421 ttatttcagg ataccggcgt tcgtctgagc aatatccatt ttgaattaaa cggcggtact
    15481 ttcagttatt cctcagaagg tcatatttat gcgtccaggt aaatcactca ttattccatc
    15541 catatttttc ttctccggtt tttcatttgc aacaacacaa cctcttgtca caataggaga
    15601 acttgaagca caacaaaacc ggaatattct tttacaggca aaagttcagg gcgcacagct
    15661 acagaaacaa ctcgaagaat cagatgttaa tctgtcctct gaaactgttt caggtttctc
    15721 tggtatgact gcctctttgc catcagtttc agagcagccg acatctaaaa acagaaagga
    15781 attgcccgtt attatggaaa taaacggcaa agataaacgt cttcatgccg ttcttcgcat
    15841 ggctgatgga cgtcagacaa gcgtcaccac tggtagccag cttccgggta catccgtcac
    15901 ggtgaagtcg atctcattgt ctggcgtcac gttaagtgat ggcaccaccc ttactttctg
    15961 agtgatgtga tatggacaaa tataatttga aggatgctct cctttttata tcccggggag
    16021 acacccatga aattctcatc gaaacaaatc agcgaacaag acctgacgta cagagtaatc
    16081 tccaggaact gctaaactta taccctgaca tcatcccaaa agtagtctcg ctgtctgagt
    16141 tacaggaagc cggtcaggat gatgaaaata aaggtccgaa agaacggatt attcatctga
    16201 aagatcttgc agatgtcagt gaaagtgaga agaaagttct ctcctatttt gaaacggcca
    16261 gaaaacttgg tgcttcagat attcattttt taatttcaga gtctattttc aaagttcgca
    16321 tgagaatatt cggtgaactg caaactgtag atgaagatca acctgcgttg ggttattcac
    16381 tttgcgcaac agccattctg tcaatggctg atgtgactga aaccagtttc ttccctcaaa
    16441 gggaacagga tgcgcgcctg tccccacaat taatgcgaaa aataggaata tttggtgcac
    16501 gatacagtca cagacctacg ggagatggtc tgattgcagt tatgcgcctg atacccgatg
    16561 acggagacaa agttcccacg tttaagcaac tgggctttat accggagcaa atccggttgc
    16621 tgaacgtcat gctgcgccgc ccggaaggga aaatagttct gtctggtcca acaggttcag
    16681 gtaaatcaac aacgttacgc agtgcctgcc gtgtatatct tgacgataat caggggcgac
    16741 acctgctgac gatcgaagat ccgctggaag gacagattct gggggcaaca caaaccccga
    16801 ttatctgtga caaatccgac gaagaggccg tcaaactggc atggagtcgt gctatttcat
    16861 cggcaatgcg acttgacccc gatgccatca tggaagggga aatgcgcgat cttgtctcga
    16921 tgatgtcaac aacctacgcg gctcagaccg gtcacatcgt tctgacgaca ttacatacaa
    16981 actcagctct gggtataccg gagcggatga ttacgatggg tatgaatgcc gatcttattt
    17041 gcgatgcgca attactgatt gggatgatca gccagcgtct tgtaccaact ctgtgtccct
    17101 cctgccgtat tccatgggaa aagcgagtac ctgaacttag cgaagacgac cgcgcttacc
    17161 ttgagcggca ctgcaataaa gattcactct gcagtacaga taatatctgg ttccgaaatc
    17221 ctcacggatg ctccgactgt aatcacgacg taattattaa cggcagaaag cgcggtgaaa
    17281 taggtaaagg cctcaccggc aggaccgtaa ttgctgaagt gatagaacct gataatcgct
    17341 tatttcagat tctgaaaaca cgcggcaaag ttgcagcacg taaatactgg cttgaaaaca
    17401 tgcatggcat cagtcgtgta gagcatcttc ttcgccgtat caatgaaggc ctggtggacc
    17461 ctcttgaagc cgacagaatc atccctctgg acgaagacga acgcctcagc atcgatgatg
    17521 cctaacagga gaacaacatg cgtgaaatga atttcagtca acggctgaga cgtttcattg
    17581 tcagaaaaac gttcagcgcc ccctacaggg tgcagtttta cgaagctctg cgttttctgc
    17641 tggaaaataa acagccatta aagaccgcac tggaacagat gcgggatgcc tggacagact
    17701 ttggacgaaa atggcatccc tttgctgaac tggccacaga ctgtattgag tctcttcgtg
    17761 aaaacagtgg cgaaaactct ctggaatata ctcttggttt atgggttccc caggaagagg
    17821 ctgcagtaat cagtgccgga ataagaagtg gttccattgt ggatgcatta caatttgcca
    17881 ccacacttac agatgccaaa aagcaactcc atcaggccat atggcaaatg gctatttacc
    17941 cggtggggtt gttaatcatg atgacgggga cattatatgt tcttaataca gagctaatac
    18001 ctgtactgag caaaataagc tcccctgatt catggagtgg tgctcttggt tttctctatg
    18061 gattatcttt gtttgtcgat aattacggcg ctatatgtgc cgttcttttt gcagtggtca
    18121 caggtgtaat atcatggtct ctgaaaaact ggaaaagccg ctctttggct gacaatataa
    18181 tgccatggag tatttataag gatatacagg gggcagcatt cctcctgaat atggctgcac
    18241 ttctgaaagc caaaatgaca acgctcaact cactgaacgt tcttcaggac tttgcatcac
    18301 catggttaag cacacgcctt gacagcatta tttaccgcgt acgccagggg gatcaccttg
    18361 ggctggcttt gcgtcagtgc ggttatcagt tcccatccag ggaagcagcc aacttcctgt
    18421 ctttattaca gggagatggc gcaacggagc taatcggcaa ttatggccaa cggtggcttg
    18481 tacaaacgct ggagcgagta aaaaaacgag cagctgttgt gcgtttaatt atgctgatat
    18541 ttcttgtcat gtcactcctg ttactggtca tggccgttgt agacattcag tctattggcg
    18601 acaacagtat gggtaatctt taaataaaac gaggtattta tgttaatcca aaatattgat
    18661 gttaacgctc tgaagaaaaa tgagaaagaa acgtctcatg acaaaggctg gggtattatg
    18721 gaacagggtg caatagcact tgttgtaatt atcgtacttg cccttgtttt tggtggattg
    18781 tatatgttgc gttcacgaac cggtgtggca aatgaaagtt cgaacataca gacaatcatc
    18841 acaagtactc aggggctgct aaaaggtagc gatggatata cgtttaccag tggaaccaaa
    18901 atgacgggtg ctctcattca gatgggtggc gtacccaaga ctatgacagt gcgtggtact
    18961 ccatcatcag gtacagcaac gctctataac tcatggggcg gtgccgtaac tgttgctccg
    19021 gcttcaacat caggtttcaa caatggtttt accgtcacct atgaaaaagt cccacaggat
    19081 gcctgtatcc agattgccac acaaatcagt cgtactggtt taactaacgg tattaccctg
    19141 aacagtacga ctcacaatga tggaaaagtc actactgaag aagccagtgc gcaatgcaca
    19201 gctgataatg gcagcaccgg tacaaacaaa ctaatcttca ccatcaatgg ctaaggagtt
    19261 ttaatgtccg ggggtaaagt gcccctcaga cttatttcat taatcctgct ttgttctctt
    19321 atttatcccg cccgagcttc atacatcgcc cccaaacaaa tctggactaa caagtgggac
    19381 aattgctttg ccgccgccgg cgcacgctat caaattgaac cattattgtt gaaggccatt
    19441 tctgccgggg aatcttcatt gaagccgggc gcaattaaca taaataagga cagaaaaaca
    19501 ggcaaagcca gtagtacgga ttatgggttg atgcaaataa actcaaccca tattccaaag
    19561 cttataaaga tgggcgtaat caaaaagtct gaggatttaa ttaccaaacc atgtcttaat
    19621 atccatatag gaagctggat actggcaaga cattttcaga tatgtggcgt cagctggaat
    19681 tgccttggat catacaatgc cggattccgt aaggacagac atgaaacaag agagcaatat
    19741 gctaataaag tatggagaat ttatcgtgac atgaaaggga tatgccttcc cgggcaggga
    19801 ggcagacaat gcagacaatc gtaggcataa gtctctcccc tgtttatatc ctcccattga
    19861 tgttcatatt ttccattatt ggacgaactc tgttattcag agttcgttat tttttatctg
    19921 atacagaaca tctctggtat aagacacaca ctgcagttct gtcaggaata tggctatata
    19981 gtatagctgt ggcattaatt attttatcgc catcccaact tctctaccgt attcatgctg
    20041 ttcttattct ttcgttcatg ctgcaaatgg cagtaacgga tgcactaaca ggcctcttac
    20101 ctggtacatt caccaggcgt tttttaatcg ctggaatatt atcacaaatc acaactgata
    20161 tatggtggct ccgtgcaaca gaaattgtct ctgccgcaat tgtcttattc tgtctgcata
    20221 aactggttaa ccgccatcgt cttaatattg gcacaggaga cctgtggctt attgcaggta
    20281 ttaccgcatg gtcagggcta tataacgcca tatggagtgt gttgctgggc gcaggaggat
    20341 ttgtcttatg gcattcaaca tggtgcataa aaggacataa agaaggccca ctgggtccat
    20401 ggctgtgtct tggccatgtc cttttgctac tggataatct ttatcaacca ctatgggtaa
    20461 tctgatgaaa aaatatgacc gaggctgggc atcgctggaa attggcgcgg ctttattgat
    20521 tgttatgatc atagttgcct ggggagcagg catatggcag gactatttaa aaaccaaagg
    20581 ttggcaggct gaagctcgtc ttgtcagcaa ctgggccagt gcagcccgct cttatatagg
    20641 gaaaaactac acaactctcc aggcaagtag taccacatca acccctgccg ttatcacgac
    20701 aaccatgctg aaaaataccg gctttttgtc cagcggcttt attgagacaa acagcgaggg
    20761 gcagcggtta caggcatatg tagttcgaaa cgcccaaaac ccggaattac tacaggcaat
    20821 ggttgtatcc agtggtggca ccccttatcc agtgaaagca cttatccaga tggctaagga
    20881 tattaccact ggtcttggtg gatatatcca ggacggcaaa acagccacag gtgcattacg
    20941 ttcctggtca gtagctttaa gtaattatgg tgccaaaagc ggtaacgggc atattgccgt
    21001 actgttatcg acagatgaac ttagtggtgc agcagaggac actgatcgtc tttacagatt
    21061 ccaggtcaat ggtcgccctg acttaaacaa aatgcacacg gccattgata tgggatcaaa
    21121 taacctgaat aacattgggg cagtaaatgc ccagactggt aatttcagcg gcaatgtgaa
    21181 tggtgtaaat ggcactttca gcggtcaggt aaaaggcaat agcggaaact ttgacgtaaa
    21241 tgtcaccgct ggcggtgata tcagaagtaa taatggttgg ttaattactc gtaacagcaa
    21301 aggctggctc aatgaaactc acggtggcgg attttatatg tccgacggat catgggttcg
    21361 aagtgtaaac aacaaaggca tctataccgg cggtcaggtg aaaggcggta ctgttcgggc
    21421 tgatggtcgc ctttatactg gtgaatactt acaactggaa agaactgccg ttgctggcgc
    21481 atcatgttcg cctaacggcc ttgtaggccg cgataataca ggggcaatac tttcgtgcca
    21541 atccggtacg tgggggacaa taggtggaaa actcaaagtt actcagcttt ccaccacagg
    21601 ttatctgggg caattcgact tctgtgccat tgccagaatg ggcaacgcag aggatgccca
    21661 ctactgccag gtagttgaga gcccagcagg ttcacgcaaa tggtacaaat acgagcataa
    21721 gacaggttgt attgcgtcgt gtgtaacgct caattaagtt tgatatccaa atactgaaaa
    21781 taccccggca ccacatgatg tattttctgt tggataggat gttatctgat aggaagtacc
    21841 tgcaggtaca gcaaagctga taaaggctgt ttttccatat gcagggttat tactggcatt
    21901 cacgctaatt agcgtcccac caacatatcc ctgcagtcgg gatgtatttg cacatgcacc
    21961 tccggcagat cctccattac ctccagatgc ataaataaac aatgtactgc cccctgaatt
    22021 ccgccctgag aatgaacctc tatgtgaacc taagtttgtg taagaaccat tgagcgaacc
    22081 agaagtcttc cacgtaccgg attggcacgt aggccagcag cgccagcaat ttaatctcag
    22141 ttctgacacg cgacgacata actacatttt ccggttaaat cagctctaaa tgtcccttta
    22201 tggaaattgt attcatcata aaaaccacat ttaacaattc gatttgcatc ataagttgca
    22261 actgatcctg caaagtaatt cggcttccaa ccttgagggt tttctgcatt gctcacactc
    22321 catgagcact gactggcaga aaaccctgtt ggcagcggta tttgctgacc atttgctata
    22381 cgaccagtta tcaccgtact accagaattg cttttacgcc aagtaccgga ttggcacgct
    22441 tgcagagaat gattgttggc attatttttt gcctcttttg aggttagcat gccgtctcca
    22501 cgcatccgta aaatgtccct gtcacgcgca ctggataagt acctgaaaac agtttctgtt
    22561 cacaagaaag ggcatcaaca ggagttttac cggagcaatg ttatcaagcg atatcccatt
    22621 gcccttcgga atatggacga aataacaacc gttgatattg ctacatacag agacgttcgt
    22681 ttagcagaaa tcaacccccg aacgggtaaa cccattacag gtaatactgt acgtcttgaa
    22741 ctcgcccttc tgtcatctct gttcaatatt gctcgtgttg aatggggaac ctgtcgtact
    22801 aacccggttg aactggttcg caagccgaaa gtatcctcgg gacgagatcg ccggctaacg
    22861 tcttcagaag aacgtcgcct ttctcgctat ttccgcgaaa aaaatctgat gttgtatgtc
    22921 attttccatc ttgcccttga aacagccatg cggcagggcg aaatactggc cttacgttgg
    22981 gaacacattg atttgcgcca cggtgtggct catttacctg aaaccaaaaa cggtcactca
    23041 cgggatgttc ctctgtccag acgtgcccgt aactttcttc agatgatgcc cgttaatctc
    23101 cacggcaatg tttttgatta caccgcatcc ggctttaaaa atgcctggag aatagccaca
    23161 caacgacttc gcatcgagga cctgcatttt cacgatctac ggcatgaagc aataagccgc
    23221 ttcttcgaac tgggtagcct gaatgtaatg gagattgctg caatatcagg acatcgttcc
    23281 atgaatatgc tgaaacggta tactcatctt cgtgcatggc tactggtcag taagcttgat
    23341 gcccgccggc ggcagacaca aaaagtggca gcatggtttg tgccgtatcc tgcccatatc
    23401 acgaccatcg atgaagaaaa tgggcagaaa gcgcatcgta ttgagatcgg tgattttgat
    23461 aaccttcacg tcactgccac aacgaaagag gaagcagttc accgcgccag tgaggttttg
    23521 ttgcgtacac tggccattgc agcacagaaa ggcgaacgtg tcccatctcc cggagcgtta
    23581 cctgttaacg accctgacta cattatgatt tgccctctga acccgggcag caccccgctg
    23641 taaacatcat tcaagacaca tacagaaagg cgagttgcaa caactcgcca aacacattcg
    23701 atctgcatga tcgaaattat tcgtttcacc agaaaaaaca ccgaagatac aataaccaca
    23761 tgagctgaaa agactttctc agtcggagga acaatgagac tgaatacgac cggtattgcg
    23821 gcccgaatga tgctctcgct ggacaaaaaa gcaatcggcg aaaaactcat caacggtcgt
    23881 cagataaacc cgacacctct gcaggtccgt tacccacaag gggtaagaga agttctgggg
    23941 ataatgagcg aacaattagc catatccacc gctgatttaa cccgaatcct gcttgaggat
    24001 gctcttcata atatgtttat gcctgcggat aacaccacag gaaacataat aagcagaatt
    24061 gaatacatca tgctgtcgca tgatataaat gcgccattac tggcaacatt gctgtcgcca
    24121 tggaatatcc gctccacggt tatacaggac ccggccagac ttgcagacta tctttcagct
    24181 gacgctctcg aacatcttgc tgaatgtttt aatctcaatc cggactggct gaatggccat
    24241 gaaaactatc cgatagcgtt gtccggtgaa tggccagata ctgctgataa tttcagaatg
    24301 cttattaatg atagcagcaa cactgaagtt attttctggc atagtttccc cttcgcagga
    24361 aacacgaaaa gagaatattg cggggtaata ttgagacagg aaaaagaaat aaatggctct
    24421 gtaatatatc cggcactatc attatcacca acacttctga acgatgaaaa aagaaaatgg
    24481 ttaactgaat atacaaccag gcagaataca acaatgtctt tgcgacgcgt cacgttgaga
    24541 cctggccttg ccgagaacct tattacaggg caaatactac ctgttagctt atttaatacg
    24601 tctttattac cctggtaaat accagatagt accaaagtaa aaaattacgg cacatccgtg
    24661 tcatagcgtt gttttgtcta aattctgata aacaggaaat taaatgatga agaaaaatca
    24721 tattacccgc accatcattg catctgctgt attattttcc tttaacgctg cagcagcgac
    24781 gtcatatttt gaagcgcgta acgatgcaat gggtggcacc ggggtagcat cttcccatta
    24841 tggtgtggca cctctggcaa acccggcttt actgacaaag cacaacagca atgatgattt
    24901 cagccttctt ctgccgtctg ttggggcaca agttgctgat cctaatgatg tatcaaataa
    24961 agctgatgat gttaaagatg actgggattt gtttgacagt gctgtagata accagcatgg
    25021 cgtacaacag gcagcggcaa atcttaaaca tcgtctgcag gaattccgca atatcaatgc
    25081 agatgctcag gtaggtgtat cagctgtagc agccatggca aatgacactc tgccgtttgc
    25141 ccttatggtc aagtcttacg gaactgtcag cgtaaacgga aaagtaaacg atgcagacct
    25201 ggattatctg gacaaagttg ccaatggaac aattaccgac gtcgataaga atgccctgac
    25261 ctcacgcgca ttcgggcgtg cagctgtaat taccgacgtc ggaatttcat ttgccaaaga
    25321 actggaaacg gccggacaaa aatggtctct tggcgtcaca ccaaaatatc agcgtgtgga
    25381 cctgtttaac tacaacgtaa cggttcgtga ttacgacaaa gacgattttg acggtgacaa
    25441 gtaccacaac acgaaaaacg gattcaacgc cgatattggt gcttatacag acctgaatga
    25501 caactggact gtcggtcttg ttgcccagaa catcattcca cgcagtattg atactaaagt
    25561 cgtcaatggc tttaaagaaa ccttcaaagt tcgtccacag gcaaccgccg gtgtatcctg
    25621 gcataatgac ctgtttacca ctgctcttga cgttgatctg actcctgcca gtggcttcac
    25681 ttctgacagc aaacgtcagt ttgcaagtgt tggtgctgaa tttaacgcat ggaaatgggc
    25741 gcaattgcgt gccggttatc gtcagaacat ggcatcaaac tccggaagcg ccttcaccgc
    25801 tggcgttggt atctctccat ttgacgtcgt acatatcgat gtttccggcc tggtaggaac
    25861 tgaccacgat tacggtgcaa tggcacaact tcagttcact ttctgattac tgtccccgcc
    25921 cccggcacta aacccggggg tatttttata ttcagtttaa ataacatgat gaaaccacgc
    25981 tcttcttatt caaaaacagc attcattctt ttattttctg ttttcctggt agcggcagtg
    26041 acaaaagcaa aaagctcgct tcccgatatc accctagaac aggcaaaaga aattaatgct
    26101 gataacaccg ttattttcct tttccgccat ggagaacgtt gcgaccgttc agatatgcca
    26161 tgctattcgg ataaaagcgg aatcactatt accggtacag agaaagcaca gcaggaaggt
    26221 attaagttcg caacaatctt cagtgaatat gatatttact ccagcaatgc ggtaagaacc
    26281 atacaaactg caaaattctt ctccggtaaa gaacccgtcg ttatggacag tttatcagac
    26341 tgcaataatg atctttataa gacgcttgaa tcaatcgcaa gagaatctca taaaaggaac
    26401 atagtaataa tgacacataa tcattgttta tcatttctgg ccagagatag gctcggcaag
    26461 aaattcaaac cggcgtacct tgatgccctg atcatgcatt acgatggtac ccggctcata
    26521 cttgacggaa aatacaacaa agaggcatag aggatatttg aatttacata aattctgata
    26581 tactcagtaa gatacaagag tgtacgggca catgtgcctg tctgaattgc aggttatccg
    26641 gacgagggcc gggaactgtt tcagggacaa gcgccggtac gttcgattca taaatcgtcg
    26701 agtcatccat catggatcga ttcggcgcgg agcgttaaag attacgctca tattcgtttt
    26761 atgtctgacg acacatcaac cagccagtat caggaataat caccttcagt aaactatgag
    26821 gctatttacc tggccacact ggcatttatt tccggtaacg caagtatagc cggaaacaaa
    26881 catcatcctg tctgtaccgg agcaccggta tatcccattc tgatttaact gctcaggaat
    26941 tattatgaac cgtattatac ctgcggggtg tcttgccgcc ctttttctgg ctggctgcaa
    27001 ctccccttct cagcatactc ctgttccgcg taactacggt gctgcctctg atgtggcggt
    27061 tacccggcac actcagtaca cattatggga caaaggtgtg ttttccggcc aacttccggt
    27121 ttcaacgggg tctcatcttc tgacagctaa cagcgatcgc ctttcctttg actgggaagg
    27181 tgatgcaatt gaattactga acgaactggc cagagtcagg gggatgcagt ttaactacaa
    27241 tggtgtccgc ctgccgttac cagtcaacct tcacgtccgg gatatgacgt tttccaatac
    27301 gttgagactt attgaagccc agacagcctg gagagcaaca atccatcaat atccgggctt
    27361 gttacaggtc agcttcatgc agccggagaa ccggaaaaaa tgaaagcact cacctctctc
    27421 cttttgccag taatactgct tactggttgt tcttcttccc ctaccatctc gccaggtggt
    27481 gtcaatacgc caccacctga cattaatgca tggcttaaac cacgaagtga aaagccggat
    27541 agtctgtcag aaacacgctg gaaaatgctg accgacgcag gtaaaacgct tggatttcgt
    27601 ggtggcaagg ctcagcgctc atgggagctg attcaggcac tcaacgcccg ggaaagcaca
    27661 cttaatgcct tatacgattt ccggccactg attagcccgg aaggctggct accaccggtt
    27721 attgatgaag cacaggacgt agctcatatc acgccagatc aaatccggac ctcttcccgg
    27781 gtctggacca tcattcgccc tgaacgcttt gtcagcaatc caccgggctg gcgtgactgg
    27841 cttctccggg ggctttcaac aacagccact ccgggtacag aaggcagcgt cgttccagaa
    27901 gacagcgtgc aacgaaaagt gtgggaaacc gcattacggc agggatggca ggaaggaaga
    27961 caaaacgccg acctgacgct tgaagccaac cagaaaaccc tcacccgtga ttaccggggc
    28021 atgatgctgt actcacttct ctggcgtcag ggcatgatca cccgtccgga tgtttctgat
    28081 caaatgcaaa ccgttacagg tgacgggaaa aaactggtca ctggagatcg tgttcgtcgc
    28141 cttaaaaatc atgcggaatt caatcttcag aaatctcact ggcgtccgct tataggcact
    28201 gaaggaggct cccgatgaat attcctgatg agtttggtct ttttccgttt cagcgtttca
    28261 ctgcagatga actacggcat ttctttgtct ggtgtgccgc acataaagtc agtgatgtgg
    28321 atctgaccgg tgggtcacct gtatctgtca gtcgctttgg ccgacgggtg cgttgttcca
    28381 gtgcaacgtt accaaccaca ctcatgtcct ccctgattga tgaactgttc ggtcgggaag
    28441 tcattccccg cgttctggca ggcaatccgg ttgacaggac gatacagatt aacggggatg
    28501 catccggtcg ctatggtctt aaacgcggag aacgcatccg gttacgctct cacctcattc
    28561 agggcacatc tggtgcggag gagaaagcaa tatcaataac catgcgtgtc atcccgacag
    28621 aaataccgga catcctctcc atgaacattg aaccagacct gcttgaagca atggtctgca
    28681 aaagcggtct gggatttgta tgtggtgaaa ccgggtcagg aaaatcaacg ctgtgttcag
    28741 cactgtaccg ttacattatg gacaatttcc ccgacgccaa aatcgtgaca tatgaagacc
    28801 cggtggaata tatcctggga aatgaaaacg atctgctccc accgcatcag gcagaaatcg
    28861 ggcgtgatgt ggtcagtttt gctgccggac tgcgttctgc tgtacgacgt aatcccgaaa
    28921 ttatcggtgt tggtgagatc agggataacg aaaccgccga cgcagcggta caggcaggca
    28981 acaccggaca ttactgcctg agcaccatgc atacgaaatc tcctggtgaa acgctggcac
    29041 gtcttcttgg gctgtttccc cctgtcatca gggattcgat ggcctgggct gtcctgtcac
    29101 tgttgcagtt cattctggtt caggttctgg tcagaacaaa tgacggtggc cgtaaagccg
    29161 tccgggaata tatcgtcatt aacgatgagc ttcgcgacaa tctttccgga atgccacatg
    29221 cagagtgggg gcatcacatt gatgccataa tccggcagga aaaacgtcgt atccgggatc
    29281 agattctgga aatgtatatc cggaatgaag ttgaccgaag agaagcgatt ctttttatcc
    29341 cgccagggga gttacggtca tgaaaagaga aggtttctgg cgatatgcaa cacctccagt
    29401 caacatccag ggcgtacctc tgccgttcac catgatttat ctgtttatat gcccttttcc
    29461 ctccgaaaca accttctgga tttgcaccgg catcatttta tttttcgtca ttctcgaccg
    29521 ttcaggctgg actgtcagga ctatctgtac acgtattttc agcattctga gaggggccat
    29581 cgcctccggt cgcccatggt ggtatcgcca ccatacggaa tcaccacgag actggactgg
    29641 cctcgattaa attctggagt ctttatgtca ggtaaaaaaa ctatcgttac tctgctccgg
    29701 gtatcactac tggcatgccc gttactgttc acgacaccat cgtttgcaat gatcgacacg
    29761 ccatccgtga aggtcggctt ttctcctgaa ggaagtgcat ccgctctggt gcttgacaca
    29821 atcaacagtg cggaaagctc catcaggatg atggcatatt ctttcaccga cccggatgta
    29881 atgcatgcgc tggcaaaagc gaaaaaacgc ggagttgacg tccgtattgt tgttgatgac
    29941 aaggggaata cgaaccgggc aagtcgggaa gcgatgaaat atatcaacct gctggacatt
    30001 cctctgcgga ctgtagatgt cttccccatc catcacgaca aagtcatcat tgttgacgga
    30061 aacacggttg aaaccggctc ctataacttc tctcgtgctg ctgcacgcaa gaattcagag
    30121 aatgtcgttg tgcttaagaa tatgccggat gtagccgcac aatatcttga acactggcag
    30181 gatcgctgga ataagggtac agactggaga ccctgacaaa catttctccc ccggttttct
    30241 atccccccag ccacccccgg tttccggcgg tggttttttt ccgtcttttt tcaggagaag
    30301 cactcatgcc gtctgtatcc cgataccgca cctggcttgc cgtgcctgca gatgaaatcg
    30361 aagatctcaa aaaagcacat cccccgatga acgggcacac gcccgttctc tgggacaagg
    30421 accacaaact ctggtttgcc cgcccggggg cggacctgtc catgctggac cgctggctgc
    30481 cccggccgca ggaagtctcc atgaacggca gtgacccggt caccgagttt gcccaggtac
    30541 tggaaaatgc cgggctggtt ctgaaagaac tgccggtcat ggacgggaaa atccaccgtg
    30601 tcccgaccgc cggtgacaaa aaaggacaaa aaagtggcgc atatcgcggc ttcctggacg
    30661 gcagacctgc cggctggtac agggattacc gcagcgcgga tgattcgccg gtcacctgga
    30721 ctttctccgg cggagagcag acagatcccc gcgcaagact tcacctgaaa gcgcattcga
    30781 tgcaacgcag ggaagacgcg gagcgggaac tgaaagcaca gtacaaccga caggctgcct
    30841 atgcccgccg ctatgtcagc aaatggccgc aggccacggc acatgaatac ctgacccgga
    30901 aaggcattca ggctgcgccg ggggtgcgaa taaacgacaa aaatgagctt gttattcctt
    30961 tcagcaaccg taacggcgca atacgctcct accagcgcat tccggtcacc ggcgggaagg
    31021 atgcccgcat cctgaaagat tccgagaaaa ccggtaactg gtttgcgctg ggcacgccgc
    31081 gcaacggcca gccggtactg tttgccgagg gctacgccac tgccgcctcc ctgcacgaag
    31141 ccacaggcct tccggtactg atgacagtgg atgcgggcaa catgattatt gtggccgaag
    31201 aggcccggca aaaatggaag caaagcccct ttatcttctg tgccgacaac gatcatgcac
    31261 gccaggttaa caaaggtatc gtcagtgcaa caaaagccgc agaactgaca ggaggatcgg
    31321 tcatctttcc tgcgttcacc gatgccgaaa aagcgcaggg gctgaccgat ttcaatgacc
    31381 tggatgccag ccggggacgg gccgcttttc tgcatgtcat caacgcccag ttagaacata
    31441 tcggggtttc cacccccaac agtaacaccc cggaaatccg ggaggcactg gtgatcggca
    31501 acctcgtttt tacaccggtc cacactgagg aaaaaaccat gactccgaca gaatatcctg
    31561 aaacatcacc cgatacaggg cacagccatg accagggacc ttctctgccg tccgccacgc
    31621 agcaggtaca acctgctgct tccagcggta acattgctga tgaaacacag ccatttacca
    31681 gtcacgccac tgaaaataac ggcaaagatg agcggcaccc tgataacgtt caggcgcaaa
    31741 cggaaagctc tgtagttcag gacgcccctg cagaatcacc ggcatccccg gaaagtacaa
    31801 cggcgtctgc ccctgatgaa ctcgctcatc cggcggaacc tccggaaaaa gttgtctctg
    31861 tggccacaga taaagactgg cgtgaatttg aagccgaact gtcacaaccg gaaaaaaacg
    31921 agttacaaca ggagtccggc acttcaccag aaataccggc ccctgctgcc cccgccgccc
    31981 ctgaagacag cccctcatct gaaaccatga atgaatcaac cgaaccatca ccttcccctg
    32041 atgcagtcaa agaggaaatg accgtgatga cggagcctga tgacaaacaa agcaccggaa
    32101 tatctccgga tactccccgg gaagaggcgg tcagccatgt aactgaagac attccccttc
    32161 agccagaacc gttccttcct gagtcagatg gccctgaaga atacgaagac tacagcgcat
    32221 atcaggagct gatgaacaat gaaaatcctg agcatctaca ggaaaacagt gatatgccgt
    32281 cgcaaccgga cacaggccac gttcaggcag atgagtcaga acttcaggcc acaacagcca
    32341 ctatagaacc ggctgtccgg gatgaaccca ctccgcagca acctgttcag agcacatcac
    32401 cttctgataa tacttcatcg tttctcgaca aagcgcgtgg cctttttacg cgtaaaaaaa
    32461 cggattcaca ggcgcatgag aacagtgatc ccacgccctc agcggaaacc acgacgactc
    32521 caccgatacc tgacagtatt gtctacgccc cggaacgttc tgatgcaccg atatcgctca
    32581 acatggacga aattcttaaa gagcttgact gggaaaaacg agcagacaga accgtcctgt
    32641 acaaactgga tggcaaacct gccttcattg accgggtaaa ccggctggaa atggtcaacg
    32701 gtgccagcaa tgacgatcgc agcgttctgg ccgcacttgc tgtggccacc aaattttatg
    32761 ggggcgtcat agagctgacg ggcagtgatg cctttaagca aaaagcaatg cagttgatta
    32821 tcgagcacaa catcgatgtc cggatgaaat tgccagatca acgggctgaa ctagaaaaat
    32881 tacgcaagga aatggctgtc agtaaggatg ctgttgtcac ccatcagcca acaccggaac
    32941 ttaaccggaa tacccctgaa caaccagctg tccctgaccc cgttcaggaa aaagaagcca
    33001 cacaatcccc ggcgtcccct gctgccactg aatcatcaac cgtcagcacc gctcctgcat
    33061 catcaccgac tgaaccaggc aaaacggcag atgcagcacc aggtgaagaa ccaccaggaa
    33121 aacttcgccc gggagagagc gtgactgccg tactgcacaa ttttggtcgt gctgaatatg
    33181 cacccggcaa aggagaaagt ttctttgttg agcttaaaaa ccgcagtggc agcaaactct
    33241 actgggggga acaactggaa agtctggtca aaaaccatca gaaaggtgac gtggtgacac
    33301 tgacacttca gaaccgcgaa caattcatcc tcccgggaga gcaaaaagca cgtttccgga
    33361 ataagtggtc catggagtca gttaccaacg ggatctcggt atcacatgat aatccggata
    33421 aaggtcagcg tattcaggcg attccggtcg aaacctttat gaaagtggct gcgcaaatca
    33481 gccaggggtg gcccgaagag atgaaagcgt tacgtatgcc agaaaacgtc ggctcacatc
    33541 tgtttatcgg tgaagaccga catccggtct ccgcgccaca gaacgcaaat caggtaacag
    33601 aaataaccag cgcagcccct gacaagctga cacctgttct gggatcagtg gataaggata
    33661 cgcgtgaact caacctgcta cttgtccaga gtgccgatga acatctgcag ggtgtggtcc
    33721 ggctgaacgg cacattgtat ccggcactgg ccaccccatc ggccgacaac agtcagctgg
    33781 ttatcaatgc gctgaccgac aaaggtttac gctttgcagg ttatggtgaa gcggtaaacc
    33841 acgatgctga cagcacgaat cgccccgcac cggagcttat gcagtttcat ctgaaaaccc
    33901 gggaagaacc gctttttgct gctgtctaca cgccggaaaa acaacctgat gcgttgtacc
    33961 ggaacctggg cttcgagcag tcatggcagc agtggtccaa cagccaaaag ccggaggaca
    34021 ggcaggaaaa aactctgcat caggatctct cccacagccc cggccgatga gccggtaagg
    34081 aagccatatg aacatgcata agtctctggt tgccgtgctc ggccttatcc tgatttcatc
    34141 cacggcaagt gctgcaacct gtcgtgcggg tagcgcggca caggccggta gtaatacagg
    34201 atatgagcga gcgcgtgcag ctgcggatgc atggtcacaa cgtgaaaacg atgtttcctc
    34261 atccctgcag tcctgtctgt cacgaatcaa aaaaatcagc ataaacctcc cccagttccc
    34321 cagccttgac gacattctgt cgcagctgga aaaccaggtc tgcgacgcgg tcgtggacaa
    34381 ggtgaatgaa aagctgccgg ggaatattga tccctggaag gactacaacc tatgaccgaa
    34441 aataccgagc catcctcgcc atcacatccg gcacctgacc cggaaatact gaagagcaca
    34501 atcagggcta tgaagcagtc agaacagcgg gcaaataatg tccctgcgct gataaaagcg
    34561 cttttatgta cgggcacatg tcttcttatc agtattactg gtaacgccat tcagtactgg
    34621 cactcaacga atgtggagcg cgaatatttc gctacagaca atggtcgtct ggtcaggctg
    34681 gcaccaacaa gtcagccagc atggagtcag aatgatgcaa tggcctttgg cagccaggca
    34741 ctggcgaccg cattcaacct ggattttgtg cactatcgtt cacagatctc ctccctgtct
    34801 ccgcgttttt ctgacgaagg ttttgtcgga tatgtgaatg cattacaggc atctaacatt
    34861 ctggagacga tcaagaaaga gaagatgaat ctgaccgcca cgacaggtgc tggcgttctg
    34921 gtacgacagg gacaaatgtc cgacggcgta tggttctgga cattccagta tcctgtccgt
    34981 atgcgtctgg tcggccagac aaccagcaag ccagaacagt cttttgtttt cgaaatcacc
    35041 atccagcgtg ttgaccccag actgaaacca tccggtatgg aaatccggca gatgatctcc
    35101 cgtaacgccg gaccgaactc ctgagataag taatatgcaa tcacgttatt tactgagcac
    35161 actgctcctg gtgtgcagcg ccgccacgtc tgccgataac gcaggatggc agaacgcacg
    35221 cacaccacaa acgacgaatt ctgccagcga tcacgttcag aacgcctccc aaaacaccgg
    35281 aggtgttccg gcaacgctgg taaaaggtga gctgcctgcc cccgggcagg ccagcccgct
    35341 ggtacaggat gcggcaaggc ttgattctga gctctccgcc gatgagattc gctcactacg
    35401 cagtctcatg gcggataacg agcgggccat caatgcgccc atcaccagtg ttgtaccccg
    35461 tatcagctct ctgacagtta atctgtcccc cggtgccagc cttcctcttg ttcgcacagc
    35521 catgaacaac ctgagcgtgg tgacatttac cgatatcaac ggttcaccat ggccacaatc
    35581 cgatcctcct tataacgcgg caccaaaact ctttgatgtg cagtacaacg agaacatggt
    35641 gacaatcaca ccattgcggc catgggcatc cggaaatatt tctgtctacc tgaaaggtct
    35701 gtcggtaccg gtcatcctga acgtaaccag tggcgaaaca gatacgccgt catccagtca
    35761 ggaaatggac agtcgtctgg atctgcgaat accacggcag ggaccaacca gcccggttgt
    35821 ctccatcccg acggataaga tcgccctgca tgatgcaaca ttacaggcat ttctggatgg
    35881 tattcctccc cgggaccctt cagttaagag gctgaaattc acaggtaatg tcccggatac
    35941 aacgatctgg caacacggcg atgaccttct ggttcgttcc cgggcgatgt tgcgcgatga
    36001 atttgaacag accttgtcct ctgccgacgg aactcatctc tggaagcttc ccgtcacccc
    36061 actactgaac cgccccggaa atcctggaga ctaaactccc tgagaaagag gtaaacagga
    36121 tgactaaaaa tactcgtttt tcccccgaag tccgtcagcg ggcgattcgt atggttctgg
    36181 aaagtcagga tgaatatgac tcacagt
//
LOCUS       DADMHM010000016        35653 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.017, whole genome shotgun sequence.
ACCESSION   DADMHM010000016 DADMHM010000000
VERSION     DADMHM010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 35653)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35653)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35653
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.017"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..604)
                     /locus_tag="JN125_000701"
     CDS             complement(<1..604)
                     /locus_tag="JN125_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial biogenesis outer membrane usher
                     protein"
                     /protein_id="HAY8870572.1"
                     /translation="MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDI
                     RQFNRANLMPPGVYSVDIFINGKMFERQDVTFVQNNPDADLHACFIAIKKTLSSFGIK
                     VDALKSFNDVDETVCLDPAPRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRW
                     DEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNI"
     gene            complement(629..1360)
                     /locus_tag="JN125_000702"
     CDS             complement(629..1360)
                     /locus_tag="JN125_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001572122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial chaperone"
                     /protein_id="HAY8870573.1"
                     /translation="MSRKSCLIRLFKTTVSCKLFTAIILSIFLGQPALTYAGVVIGGT
                     RGVYLSNNADKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEK
                     ILRIIHTKGVSLPDYRESVFWLNIKNIPPSASNKATNSLEIAVKTRIKLFWRPANIRL
                     IPEDAAPKVKWRREGRNLIAENPNPIHISVMDVIVDGHDVPLNMIRPFETLTLPLPAN
                     SAGGQMTWRFINDYGAVSDPIKMTL"
     gene            complement(1408..1980)
                     /locus_tag="JN125_000703"
     CDS             complement(1408..1980)
                     /locus_tag="JN125_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long polar fimbria major subunit LpfA-O113"
                     /protein_id="HAY8870574.1"
                     /translation="MKRNIIGGAFTLASLMLAGHALAEDGVVHFVGEIVDTTCEVTSD
                     TADQIVPLGKVSKNAFSGVGSLASPQKFSIKLENCPATYTQAAVRFDGTEAPGGDGDL
                     KVGTPLTAGNPGDFTGTGQAIAATGVGIRIFNQSDNSQVKLYNDSAYTAIDAEGKAEM
                     KFIARYVATNATVTAGTANADSQFTVEYKK"
     gene            2771..3010
                     /locus_tag="JN125_000704"
     CDS             2771..3010
                     /locus_tag="JN125_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001353740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1819 family protein"
                     /protein_id="HAY8870575.1"
                     /translation="MTPFRYNSDLTSGSLQTRECRIITGLLLQELDEAAWDKAMYKEN
                     VLQKRTQSTVRRISSALRKRLEHLSSDFWAFAFLC"
     gene            complement(3198..4175)
                     /gene="intI2"
                     /locus_tag="JN125_000705"
                     /pseudo
     CDS             complement(3198..4175)
                     /gene="intI2"
                     /locus_tag="JN125_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_023994230.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class 2 integron integrase IntI2"
     gene            4507..4980
                     /locus_tag="JN125_000706"
     CDS             4507..4980
                     /locus_tag="JN125_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001355915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethoprim-resistant dihydrofolate reductase
                     DfrA1"
                     /protein_id="HAY8870576.1"
                     /translation="MKLSLMVAISKNGVIGNGPDIPWSAKGEQLLFKAITYNQWLLVG
                     RKTFESMGALPNRKYAVVTRSSFTSDNENVLIFPSIKDALTNLKKITDHVIVSGGGEI
                     YKSLIDQVDTLHISTIDIEPEGDVYFPEIPSNFRPVFTQDFASNINYSYQIWQKG"
     gene            5075..5599
                     /gene="sat2"
                     /locus_tag="JN125_000707"
     CDS             5075..5599
                     /gene="sat2"
                     /locus_tag="JN125_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000704156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="streptothricin N-acetyltransferase Sat2"
                     /protein_id="HAY8870577.1"
                     /translation="MKISVIPEQVAETLDAENHFIVREVFDVHLSDQGFELSTRSVSP
                     YRKDYISDDDSDEDSACYGAFIDQELVGKIELNSTWNDLASIEHIVVSHTHRGKGVAH
                     SLIEFAKKWALSRQLLGIRLETQTNNVPACNLYAKCGFTLGGIDLFTYKTRPQVSNET
                     AMYWYWFSGAQDDA"
     gene            5657..6445
                     /gene="aadA1"
                     /locus_tag="JN125_000708"
     CDS             5657..6445
                     /gene="aadA1"
                     /locus_tag="JN125_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANT(3'')-Ia family aminoglycoside
                     nucleotidyltransferase AadA1"
                     /protein_id="HAY8870578.1"
                     /translation="MREAVIAEVSTQLSEVVGVIERHLEPTLLAVHLYGSAVDGGLKP
                     HSDIDLLVTVTVRLDETTRRALINDLLETSASPGESEILRAVEVTIVVHDDIIPWRYP
                     AKRELQFGEWQRNDILAGIFEPATIDIDLAILLTKAREHSVALVGPAAEELFDPVPEQ
                     DLFEALNETLTLWNSPPDWAGDERNVVLTLSRIWYSAVTGKIAPKDVAADWAMERLPA
                     QYQPVILEARQAYLGQEDRLASRADQLEEFVHYVKGEITKVVGK"
     gene            6521..7018
                     /locus_tag="JN125_000709"
     CDS             6521..7018
                     /locus_tag="JN125_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001444089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870579.1"
                     /translation="MRDLLKVVLSLVLAMASGQALADLPIVLVDEARLPYDYSPSNYD
                     ISPSNYDNSISNYDNSPSNYDNSESNYDNSSSNYDNSRNGNRRLIYSANGSRTFAGYY
                     VIANNGTTNFFSTSGKRMFYTPKGGRGVYGGKDGSFCGALVVINGQFSLALTDNGLKI
                     MYLSN"
     gene            7079..7450
                     /locus_tag="JN125_000710"
     CDS             7079..7450
                     /locus_tag="JN125_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000119696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870580.1"
                     /translation="MSYEPPRDGYTNGYIVDVMYDNRPSKYPAVFRTYVRIPDYVELD
                     NAEELADAIIREVELKEAWLTRVLGNSADPDASVGKWDRRLAQCGGIDEMSSGVQATY
                     FSPNGQLVGLVAYIDAEWMDE"
     gene            7860..8237
                     /locus_tag="JN125_000711"
     CDS             7860..8237
                     /locus_tag="JN125_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001271300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870581.1"
                     /translation="MSAAKALAYALCDKLESKKVDEVVRNLVSSGWNIREVAWEASSF
                     DHEMPYFDTGRDFDIGFPDTLSSKIEFLTANGSIVQARARLHFKQALIFAKASKHVAA
                     LKNSLDYYYGSSVIPPQNHGGYL"
     gene            8260..8412
                     /locus_tag="JN125_000712"
                     /pseudo
     CDS             8260..8412
                     /locus_tag="JN125_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011069623.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(8468..10084)
                     /locus_tag="JN125_000713"
     CDS             complement(8468..10084)
                     /locus_tag="JN125_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000251878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional antiterminator"
                     /protein_id="HAY8870582.1"
                     /translation="MVRLATFNDNVQVVHIGHLFRNSGHKEWRIFVWFNPMQERKWTR
                     FTHLPLLSRAKVVNSTTKQINKADRVIEFEASDLQRAKIIDFPNLSSFASVRNKDGAQ
                     SSFIYEAETPYSKTRYHIPQLELARSLFLINSYFCRSCLSSTALQQEFDVQYEVERDH
                     LEIRILPSSSFPKGALEQSAVVQLLVWLFSDQDVMDSYESIFRHYQQNREIKNGVESW
                     CFSFDPPPMQGWKLHVKGRSSNEDKDYLVEEIVGLEINAMLPSTTAISHASFQEKEAG
                     DGSTQHIAVSTESVVDDEHLQLDDEETANIDTDTRVIEAEPTWISFSRPSRIEKSRRA
                     RKSSQTILEKEEATTSENSNLVSTDEPHLGGVLAAADVGGKQDATNYNSIFANRFAAF
                     DELLSILKTKFACRVLFEETLVLPKVGRSRLHLCKDGSPRVIKAVGVQRNGSEFVLLE
                     VDASDGVKMLSTKVLSGVDSETWRNDFEKIRRGVVKSSLNWPNSLFDQLYGQDGHRGV
                     NHPKGLGELQVSREDMEGWAERVVREQFTH"
     gene            complement(10085..11611)
                     /locus_tag="JN125_000714"
     CDS             complement(10085..11611)
                     /locus_tag="JN125_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001243518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional antiterminator"
                     /protein_id="HAY8870583.1"
                     /translation="MRNFPVPYSNELIYSTIARAGVYQGIVSPKQLLDEVYGNRKVVA
                     TLGLPSHLGVIARHLHQTGRYAVQQLIYEHTLFPLYAPFVGKERRDEAIRLMEYQAQG
                     AVHLMLGVAASRVKSDNRFRYCPDCVALQLNRYGEAFWQRDWYLPALPYCPKHGALVF
                     FDRAVDDHRHQFWALGHTELLSDYPKDSLSQLTALAAYIAPLLDAPRAQELSPSLEQW
                     TLFYQRLAQDLGLTKSKHIRHDLVAERVRQTFSDEALEKLDLKLAENKDTCWLKSIFR
                     KHRKAFSYLQHSIVWQALLPKLTVIEALQQASALTEHSITTRPVSQSVQPNSEDLSVK
                     HKDWQQLVHKYQGIKAARQSLEGGVLYAWLYRHDRDWLVHWNQQHQQERLAPAPRVDW
                     NQRDRIAVRQLLRIIKRLDSSLDHPRATSSWLLKQTPNGTSLAKNLQKLPLVALCLKR
                     YSESVEDYQIRRISQAFIKLKQEDVELRRWRLLRSATLSKERITEEAQRFLEMVYGEE
                     "
     gene            complement(11614..13281)
                     /locus_tag="JN125_000715"
     CDS             complement(11614..13281)
                     /locus_tag="JN125_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001276994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HAY8870584.1"
                     /translation="MSATRIQAVYRDTGVEAYRDNPFIEALPPLQESVNSAASLKSSL
                     QLTSSDLQKSRVIRAHTICRIPDDYFQPLGTHLLLSERISVMIRGGYVGRNPKTGDLQ
                     KHLQNGYERVQTGELETFRFEEARSTAQSLLLIGCSGSGKTTSLHRILATYPQVIYHR
                     ELNVEQVVYLKIDCSHNGSLKEICLNFFRALDRALGSNYERRYGLKRHGIETMLALMS
                     QIANAHALGLLVIDEIQHLSRSRSGGSQEMLNFFVTMVNIIGVPVMLIGTPKAREIFE
                     ADLRSARRGAGFGAIFWDPIQQTQRGKPNQEWIAFTDNLWQLQLLQRKDALLSDEVRD
                     VWYELSQGVMDIVVKLFVLAQLRALALGNERITAGLLRQVYQDELKPVHPMLEALRSG
                     IPERIARYSDLVVPEIDKRLIQLQLDIAAIQEQTPEEKALQELDTEDQRHLYLMLKED
                     YDSSLLIPTIKKAFSQNPTMTRQKLLPLVLQWLMEGETVVSELEKPSKSKKVSAIKVV
                     KPSDWDSLPDTDLRYIYSQRQPEKTMHERLKGKGVIVDMASLFKQAG"
     gene            complement(13278..15386)
                     /locus_tag="JN125_000716"
     CDS             complement(13278..15386)
                     /locus_tag="JN125_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000267723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase family protein"
                     /protein_id="HAY8870585.1"
                     /translation="MWQINEVVLFDNDPYRILAIEDGQVVWMQISADKGVPQARAELL
                     LMQYLDEGRLVRTDDPYVHLDLEEPSVDSVSFQKREEDYRKILPIINSKDRFDPKVRS
                     ELVEHVVQEHKVTKATVYKLLRRYWQRGQTPNALIPDYKNSGAPGERRSATGTAKIGR
                     AREYGKGEGTKVTPEIERLFRLTIEKHLLNQKGTKTTVAYRRFVDLFAQYFPRIPQED
                     YPTLRQFRYFYDREYPKAQRLKSRVKAGVYKKDVRPLSSTATSQALGPGSRYEIDATI
                     ADIYLVDHHDRQKIIGRPTLYIVIDVFSRMITGFYIGFENPSYVVAMQAFVNACSDKT
                     AICAQHDIEISSSDWPCVGLPDVLLADRGELMSHQVEALVSSFNVRVESAPPRRGDAK
                     GIVESTFRTLQAEFKSFAPGIVEGSRIKSHGETDYRLDASLSVFEFTQIILRTILFRN
                     NHLVMDKYDRDADFPTDLPSIPVQLWQWGMQHRTGSLRAVEQEQLRVALLPRRKVSIS
                     SFGVNLWGLYYSGSEILREGWLQRSTDIARPQHLEAAYDPVLVDTIYLFPQVGSRVFW
                     RCNLTERSRQFKGLSFWEVWDIQAQEKHNKANAKQDELTKRRELEAFIQQTIQKANKL
                     TPSTTEPKSTRIKQIKTNKKEAVTSERKKRAEHLKPSSSGDEAKVIPFNAVEADDQED
                     YSLPTYVPELFQDPPEKDES"
     gene            complement(15373..16194)
                     /locus_tag="JN125_000717"
     CDS             complement(15373..16194)
                     /locus_tag="JN125_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heteromeric transposase endonuclease subunit
                     TnsA"
                     /protein_id="HAY8870586.1"
                     /translation="MAKANSSFSEVQIARRIKEGRGQGHGKDYIPWLTVQEVPSSGRS
                     HRIYSHKTGRVHHLLSDLELAVFLSLEWESSVLDIREQFPLLPSDTRQIAIDSGIKHP
                     VIRGVDQVMSTDFLVDCKDGPFEQFAIQVKPAAALQDERTLEKLELERRYWQQKQIPW
                     FIFTDKEINPVVKENIEWLYSVKTEEVSAELLAQLSPLAHILQEKGDENIINVCKQVD
                     IAYDLELGKTLSEIRALTANGFIKFNIYKSFRANKCADLCISQVVNMEELRYVAN"
     gene            complement(16354..18183)
                     /gene="glmS"
                     /locus_tag="JN125_000718"
     CDS             complement(16354..18183)
                     /gene="glmS"
                     /locus_tag="JN125_000718"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HAY8870587.1"
                     /translation="MCGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMT
                     RLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEANAHPHVSEHIMVVHNGII
                     ENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTV
                     IMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPVTRRFIFLEEGDIAEITRR
                     SVNIFDKTGAEVKRQDIESNLQYDAGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQ
                     VDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYR
                     KSAVRRNSLMITLSQSGETADTLAGLRLLKELGYLGSLAICNVPGSSLVRESDLALMT
                     NAGTEIGVASTKAFTTQLTVLLMLVAKLSRLKGLDASIEHDIVHGLQALPSRIEQMLS
                     QDKRIEALAEDFSDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPL
                     ALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVSSDNMHIIEMP
                     HVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRNLAKSVTVE"
     gene            complement(18345..19715)
                     /gene="glmU"
                     /locus_tag="JN125_000719"
     CDS             complement(18345..19715)
                     /gene="glmU"
                     /locus_tag="JN125_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HAY8870588.1"
                     /translation="MLNNAMSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAAN
                     ELGAAHVHLVYGHGGDLLKQALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILML
                     YGDVPLISVETLQRLRDAKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATD
                     EQRQIQEINTGILIANGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQ
                     RLSEVEGVNNRLQLSRLERVYQSEQAEKLLLAGVMLRDPARFYLRGTLTHGRDVEIDT
                     NVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDVNLAAACTIGPFARLRP
                     GAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANK
                     FKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAISRVPQTQKEGWR
                     RPVKKK"
     gene            complement(20066..20485)
                     /gene="atpC"
                     /locus_tag="JN125_000720"
     CDS             complement(20066..20485)
                     /gene="atpC"
                     /locus_tag="JN125_000720"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001251972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HAY8870589.1"
                     /translation="MAMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLT
                     AIKPGMIRIVKQHGHEEFIYLSGGILEVQSGNVTVLADTAIRGQDLDEARAMEAKRKA
                     EEHISSSHGDVDYAQASAELAKAIAQLRVIELTKKAM"
     gene            complement(20506..21888)
                     /gene="atpD"
                     /locus_tag="JN125_000721"
     CDS             complement(20506..21888)
                     /gene="atpD"
                     /locus_tag="JN125_000721"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017800291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HAY8870590.1"
                     /translation="MATGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNERLVLEVQ
                     QQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLGEPVDMKGEI
                     GEEERWAIHRAAPSYEELSNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNM
                     MELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRL
                     RVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEM
                     GVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPA
                     VDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVA
                     RARKIQRFLSQPFFVAEVFTGSPGKYVSLKDTIRGFKGIMEGEYDHLPEQAFYMVGSI
                     EEAVEKAKKL"
     gene            complement(21915..22778)
                     /gene="atpG"
                     /locus_tag="JN125_000722"
     CDS             complement(21915..22778)
                     /gene="atpG"
                     /locus_tag="JN125_000722"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HAY8870591.1"
                     /translation="MAGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRP
                     YAETMRKVIGHLAHGNLEYKHPYLEDRDVKRVGYLVVSTDRGLCGGLNINLFKKLLAE
                     MKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQAY
                     DEGRLDKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLKHKSWDYLYEPDPKALLDT
                     LLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQE
                     LTEIVSGAAAV"
     gene            complement(22829..24370)
                     /gene="atpA"
                     /locus_tag="JN125_000723"
     CDS             complement(22829..24370)
                     /gene="atpA"
                     /locus_tag="JN125_000723"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001176751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HAY8870592.1"
                     /translation="MQLNSTEISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGL
                     ADCMQGEMISLPGNRYAIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRG
                     LLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIG
                     RGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGAL
                     ANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLL
                     LRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKNGSLTALPIIETQA
                     GDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGISVSRVGGAAQTKIMKKLSGG
                     IRTALAQYRELAAFSQFASDLDDATRKQLDHGQKVTELLKQKQYAPMSVAQQSLVLFA
                     AERGYLADVELSKIGSFEAALLAYVDRDHAPLMQEINQTGGYNDEIEGKLKGILDSFK
                     ATQSW"
     gene            complement(24383..24916)
                     /gene="atpH"
                     /locus_tag="JN125_000724"
     CDS             complement(24383..24916)
                     /gene="atpH"
                     /locus_tag="JN125_000724"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HAY8870593.1"
                     /translation="MSEFITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQM
                     AELLSGALAPETLAESFIAVCGEQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAV
                     SEATAEVDVISAAALSEQQLAKISAAMEKRLSRKVKLNCKIDKSVMAGVIIRAGDMVI
                     DGSVRGRLERLADVLQS"
     gene            complement(24931..25401)
                     /gene="atpF"
                     /locus_tag="JN125_000725"
     CDS             complement(24931..25401)
                     /gene="atpF"
                     /locus_tag="JN125_000725"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001052215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HAY8870594.1"
                     /translation="MNLNATILGQAIAFVLFVLFCMKYVWPPLMAAIEKRQKEIADGL
                     ASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIV
                     AQAQAEIEAERKRAREELRKQVAILAVAGAEKIIERSVDEAANSDIVDKLVAEL"
     gene            complement(25463..25702)
                     /gene="atpE"
                     /locus_tag="JN125_000726"
     CDS             complement(25463..25702)
                     /gene="atpE"
                     /locus_tag="JN125_000726"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004246596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HAY8870595.1"
                     /translation="MENLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPD
                     LIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAVA"
     gene            complement(25749..26564)
                     /gene="atpB"
                     /locus_tag="JN125_000727"
     CDS             complement(25749..26564)
                     /gene="atpB"
                     /locus_tag="JN125_000727"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HAY8870596.1"
                     /translation="MASENMTPQDYIGHHLNNLQLDLRTFSLVDPQNPPATFWTINID
                     SMFFSVVLGLLFLVLFRSVAKKATSGVPGKFQTAIELVIGFVNGSVKDMYHGKSKLIA
                     PLALTIFVWVFLMNLMDLLPIDLLPYIAEHVLGLPALRVVPSADVNVTLSMALGVFIL
                     ILFYSIKMKGIGGFTKELTLQPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYAG
                     ELIFILIAGLLPWWSQWILNVPWAIFHILIITLQAFIFMVLTIVYLSMASEEH"
     gene            complement(26573..26953)
                     /gene="atpI"
                     /locus_tag="JN125_000728"
     CDS             complement(26573..26953)
                     /gene="atpI"
                     /locus_tag="JN125_000728"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418195.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit I"
                     /protein_id="HAY8870597.1"
                     /translation="MSVSLVSRNVARKLLLVQLLVVIASGLLFSLKDPFWGVSAISGG
                     LAVFLPNVLFMIFAWRHQAHTPAKGRVAWTFAFGEAFKVLAMLVLLVVALAVLKAVFL
                     PLIVTWVLVLVVQILAPAVINNKG"
     gene            complement(27570..28193)
                     /gene="rsmG"
                     /locus_tag="JN125_000729"
     CDS             complement(27570..28193)
                     /gene="rsmG"
                     /locus_tag="JN125_000729"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HAY8870598.1"
                     /translation="MLNKLSLLLKDAGISLTDHQKNQLIAYVNMLHKWNKAYNLTSVR
                     DPNEMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRV
                     RFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFASLNDMVSWCHHLPGEQGR
                     FYALKGQMPEDEIALLPEEYQVESVVKLQVPALDGERHLVVIKANKI"
     gene            complement(28217..30106)
                     /gene="mnmG"
                     /locus_tag="JN125_000730"
     CDS             complement(28217..30106)
                     /gene="mnmG"
                     /locus_tag="JN125_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000499793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HAY8870599.1"
                     /translation="MFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQ
                     MSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRV
                     LYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD
                     GKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQ
                     HGGNPMPVFSFMGNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRY
                     CPSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENA
                     KIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAA
                     RLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTE
                     IGRELGLVDDERWARFNEKLENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREAS
                     GEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNE
                     NTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISGVTPAAISILLVWLKKQGM
                     LRRSA"
     gene            complement(30485..30928)
                     /gene="mioC"
                     /locus_tag="JN125_000731"
     CDS             complement(30485..30928)
                     /gene="mioC"
                     /locus_tag="JN125_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein MioC"
                     /protein_id="HAY8870600.1"
                     /translation="MADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGPLLEDL
                     SASGIWLIISSTHGAGDIPDNLSPFYEALQEQKPDLSAVRFGAIGIGSREYDTFCGAI
                     DKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWINLLK"
     gene            complement(31018..31476)
                     /gene="asnC"
                     /locus_tag="JN125_000732"
     CDS             complement(31018..31476)
                     /gene="asnC"
                     /locus_tag="JN125_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator AsnC"
                     /protein_id="HAY8870601.1"
                     /translation="MENYLIDNLDRGILEALMGNARTAYAELAKQFGVSPGTIHVRVE
                     KMKQAGIITGARIDVSPKQLGYDVGCFIGIILKSAKDYPSALAKLESLDEVTEAYYTT
                     GHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTETLIVLQNPIMRTIKP"
     gene            31628..32620
                     /gene="asnA"
                     /locus_tag="JN125_000733"
     CDS             31628..32620
                     /gene="asnA"
                     /locus_tag="JN125_000733"
                     /EC_number="6.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--ammonia ligase"
                     /protein_id="HAY8870602.1"
                     /translation="MKTAYIAKQRQISFVKSHFSRQLEECLGLIEVQAPILSRVGDGT
                     QDNLSGCEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPD
                     EDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEAAVSEEFGLAPF
                     LPDQIHFVHSQELLSRYPDLDAKGRERAIAKDLGAVFLVGIGGKLSDGHRHDVRAPDY
                     DDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIRVDADTLKHQLALTGDEDRLQL
                     EWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQCGVWPAAVRESVPSLL"
     gene            complement(32625..34076)
                     /gene="viaA"
                     /locus_tag="JN125_000734"
     CDS             complement(32625..34076)
                     /gene="viaA"
                     /locus_tag="JN125_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase RavA stimulator ViaA"
                     /protein_id="HAY8870603.1"
                     /translation="MLTLDTLNVMLAVSEEGLIEEMIIALLASPQLAVFFEKFPRLKA
                     AITDDVPRWREALRSRLKDARVPPELTEEVMCYQQSQLLSTPQFIVQLPQILDLLHRL
                     NSPWAEQARQLVDANSTITSALHTLFLQRWRLSLIVQATTLNQQLLEEEREQLLSEVQ
                     ERMTLSGQLEPILADNNTAAGRLWDMSAGQLKRGDYQLIVKYGEFLNEQPELKRLAEQ
                     LGRSREAKSIPRNDAQMETFRTMVREPATVPEQVDGLQQSDDILRLLPPELATLGITE
                     LEYEFYRRLVEKQLLTYRLHGESWREKVIERPVVHKDYDEQPRGPFIVCVDASGSMGG
                     FNEQCAKAFCLALMRIALAENRRCYIMLFSTEIVRYELSGPQGIEQAIRFLSQQFRGG
                     TDLASCFRAIMERLQSREWFDADAVVISDFIAQRLPDDVTSKVKELQRVHQHRFHAVA
                     MSAHGKPGIMRIFDHIWRFDTGMRSRLLRRWRR"
     gene            complement(34070..35548)
                     /gene="ravA"
                     /locus_tag="JN125_000735"
     CDS             complement(34070..35548)
                     /gene="ravA"
                     /locus_tag="JN125_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001339853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase RavA"
                     /protein_id="HAY8870604.1"
                     /translation="MSGKNFPPEQFVGKGLYERSHAIRLCLLAALSGESVFLLGPPGI
                     AKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLPEA
                     EIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEA
                     LYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITL
                     PDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLILLKD
                     CLWYDAQSLNLIQQQIDVLMTGHAWQQQGMLTRLGAIVQRHLQLQQQQSDKTALTVIR
                     LGGIFSRRQQYQLPVNVTASTLTLLLQKPLKLHDMEVVHISFERSALEQWLSKGGEIR
                     GKLNGIGFAQKLNLEVDSTQHLVVRDVSLQGSTLALPGSSAEGLPGEIKQQLEELESD
                     WRKQHALFSEQQKCLFIPGDWLGRIEASLQDVGAQIRQAQQC"
BASE COUNT         9166 a         8929 c         8248 g         9310 t
ORIGIN      
        1 caatattcag tccattgcgc agattgagat aactggtatc tgtctcttgt gaaccataat
       61 ctgaacgtag tgtatgtgaa ccagaaaaat cgtagttgat ggtgagcgcg ttaatcccct
      121 catcccaacg cgtggggctg atgtaatcat aagccatcgc gtccatgtag atttggggaa
      181 tggatatatt cagctgcaat ttatcactgt caaactgcca ggatgagcct tcaatacgtg
      241 gagcaggatc gaggcaaacc gtctcatcca catcattgaa cgatttgagc gcatcaactt
      301 ttatgccaaa ggaggacagt gtttttttaa tggcaataaa gcaagcgtgc agatcagcat
      361 ctggattatt ctgaacaaat gtcacatcct gacgttcaaa cattttaccg ttgataaaaa
      421 tatcaacgct ataaacacct gggggcatca ggtttgcccg attaaactgg cgaatatcga
      481 ctccggattg atggtcgatt tccagaagcg ccggattgaa tacactgacc tcggccatca
      541 ggttttgcga gaaaatcaga cacgtccctg ccgtgaggcc aaccactatt ctggtcgtca
      601 tcataatacg cctatcctta tcccttgctt acagcgtcat ttttatcggg tcactgactg
      661 cgccgtaatc attaataaat cgccaggtca tttggcctcc cgcagaatta gcaggtaaag
      721 gtaacgtgag cgtttcaaaa ggacggatca tattgagggg cacatcatgg ccatcaacga
      781 tgacatccat cacactgata tgaattgggt tgggattctc tgctatcaga tttcgccctt
      841 cccggcgcca tttcactttc ggcgcagcat cttcgggaat aaggcggata tttgctggtc
      901 gccagaacag cttgatacgc gtttttactg ctatttccag cgagttcgtc gctttgttgc
      961 tcgctgatgg cggaatattt ttaatattca gccagaagac tgactcgcga taatcaggca
     1021 atgacacacc tttggtgtga ataatgcgta atattttttc ttgcgaaggt tctaatcgtg
     1081 atactggcgg aataacggta aacggcgctt tgcttttatc ctctttatta aatggatcta
     1141 cccaagcttg gatgagataa ggtatttttt cttctttgct aaatacagaa atagatttat
     1201 cagcattatt acttaagtaa accccccgcg taccaccaat gacaacgcct gcataagtta
     1261 atgctggttg gcctaaaaaa atgctgagta taatcgcggt aaataactta catgaaactg
     1321 ttgttttaaa gagcctgatt aaacaacttt ttctggacat aacgactccc tggccaaagc
     1381 caactgaata aaaaggccct tgataaatta tttcttatat tcgacagtaa attgtgaatc
     1441 agcgttcgcc gtaccagccg ttacggtcgc attggttgcc acatagcgtg caataaactt
     1501 catttcagcc ttgccttcag catcgatagc ggtataagca gagtcgttat aaagtttaac
     1561 ctgcgaatta tcggactggt taaaaatacg aataccaacg ccggttgccg caatcgcttg
     1621 tcctgtaccg gtaaaatcac cagggttgcc tgctgtaagc ggcgtaccca ctttcaggtc
     1681 gccgtcgccg ccaggcgctt ctgtaccatc aaaacgaacg gctgcttgag tgtacgttgc
     1741 cgggcaattt tcaagtttaa tactgaactt ctgtggcgac gccagactac ctacacctga
     1801 aaatgcattt ttactgactt tacccagtgg gacaatttga tcggctgtat cggaggtaac
     1861 ttcacaagta gtgtcgacaa tttcaccgac gaagtgaaca acaccatctt ctgccagtgc
     1921 atgcccggcc agcattagag atgccagagt gaatgcaccg cctataatat tacgcttcat
     1981 aaaaactcca ttgatataat atatccttta ccatgaatca tcacttatat taataagtgt
     2041 atttttgatt caaaggaata gtacaccaaa gagacggctt tatctaaaaa taatattaat
     2101 tacgcaaaaa taaaatataa atttattgtt taaatattat ttaaacagta aaaaatcaag
     2161 tttgttatca gacattaatg ataattcaga atatatttat atagaaagat agatgaattt
     2221 attgatgtca gttataaaaa agggccaccg gtcggcagcc ctgtgggcgg acaaaatagt
     2281 tgggaactgg gaggggtgga aatggagttt ttaaggatta tttagggaag agtgacaaaa
     2341 tagatgggaa ctgggtgtag cgtcgtaagc taatacgaaa attaaaaatg acaaaatagt
     2401 ttggaactag atttcactta tctggttaac taatctagct aacctgccgc tcagcttagt
     2461 acgatcctat atccaactga tcataatcct ttcatcagta tcccaaatta aatccccctc
     2521 ctagactgcc tcaccaacac tttacagtga tcccgtattt ccggacaggt gattgatttt
     2581 tttcgcttgt acaggtgtta agccacagtt atcttgatgt ggacattatg cattgtaata
     2641 gcccattaac atgcgctaag agcataaatt aatatacagt aacaagcatt acgaggtgct
     2701 aatgtttgga aagcagcctc ttccaactac aataataagt taactatcct ccacccacaa
     2761 ataattacaa atgacccctt tccgctataa ctccgatctc accagcggct cgctacaaac
     2821 ccgagagtgt cgcattatta ctggcttgtt actccaagag cttgatgaag ctgcctggga
     2881 taaagccatg tataaggaaa atgtgcttca gaaacgcacg caatctacgg taagacgtat
     2941 ttcttcagcg cttagaaaac gcctagaaca cctaagctct gacttttggg cttttgcgtt
     3001 tttatgttag gcattgtctg gcaactggag gaagtgtaat gaccatgaat ggtcactgtg
     3061 attgacagta tcttgcttaa acttatctga acaatggtag aactggctca tatttatccc
     3121 ctctatgatt gtttatcttt ttcaccataa aaagtatcag gggctactca gggctacata
     3181 aagatattta tctactttta ctgattgata agtagcatca gtccatccgc aggactggtg
     3241 gtgccggcaa aatgctgacc caacacatgc gtatagattt gcgtggtctt aacatcgtta
     3301 tgccctaaga gttcttgcac agtgcgaata tcacgccccg cttgtaatag atgcgtagca
     3361 aacgagtgac gaaatgtatg acaagtgaca cgcttgctaa cgatgcctgc tttttgtacg
     3421 gctgccttca atgcctttcg cgcaacggag tcatgcagat gatggcggca taatttgccg
     3481 ttatacgggt ggttgcagag cgtgctggag ggaaagacaa acatccacgc cgcttgtcga
     3541 taagcagaag ggtatttgtg atctaaagca aaaggcagcg atggccctac gccttgtaag
     3601 ttgtcgtctt gctgaataag ccgcgcttgc tcaatgagtt attttattgc tgggattagg
     3661 cgcgtgggca gtaggctgtt tctgcttttc ccacccttac cgtcatgcac agtgatgcag
     3721 ccattatcaa aatcaaaatc tttaacccgc aaacgcaagc attcattaat gcgcaaacct
     3781 gcaccataca gcagcgtaaa aataacttgg ttgcgagtat ccataacctg caaaatgcgt
     3841 tgcacttcat ttgcagagat aacagagggt agccgtctag gcttgcttgc agggatataa
     3901 tcaatatcgc ccaacggctg ttgtaaaaac ctgttgtaca aaaaagctag ggcatttaaa
     3961 gcgattttct gcgtgtttat ggctacatgt ctgctgtttg ctaagctgga taaaaacagc
     4021 ctgacctctt cactgcccat ggtctgagga tgacgttttt tgtgaaacag aataaaacgc
     4081 ttaatccagt gcaggtaagt tttttcagtt ttcagcgcat aacctttttg tcgcatatcc
     4141 gtgcgtatag aatttaaaaa tggactgtta gacataaaac gctccttgtc ttgcaactgt
     4201 ctgcctatac agcctattct agctgggatt taaaaaagtg cctgtttttt acgcctagag
     4261 atgcttgttt accggtagag ttttaattta atgctaaata aattaaaatg ttatgagttc
     4321 tttgggtgag ataatgtgca tcgtgcaagc aggatagacg gcatgcacga tttgtaataa
     4381 cagagtgtct tgtattttta aagaaagtct atttaataca agtgattata ttaattaacg
     4441 gtaagcatca gcgggtgaca aaacgagcat gcttactaat aaaatgttaa cctctgagga
     4501 agaattgtga aactatcact aatggtagct atatcgaaga atggagttat cgggaatggc
     4561 cctgatattc catggagtgc caaaggtgaa cagctcctgt ttaaagctat tacctataac
     4621 caatggctgt tggttggacg caagactttt gaatcaatgg gagcattacc caaccgaaag
     4681 tatgcggtcg taacacgttc aagttttaca tctgacaatg agaacgtatt gatctttcca
     4741 tcaattaaag atgctttaac caacctaaag aaaataacgg atcatgtcat tgtttcaggt
     4801 ggtggggaga tatacaaaag cctgatcgat caagtagata cactacatat atctacaata
     4861 gacatcgagc cggaaggtga tgtttacttt cctgaaatcc ccagcaattt taggccagtt
     4921 tttacccaag acttcgcctc taacataaat tatagttacc aaatctggca aaagggttaa
     4981 caagtggcag caacggattc gcaaacctgt cacgcctttt gtaccaaaag ccgcgccagg
     5041 tttgcgatcc gctgtgccag gcgttaggcg tcatatgaag atttcggtga tccctgagca
     5101 ggtggcggaa acattggatg ctgagaacca tttcattgtt cgtgaagtgt tcgatgtgca
     5161 cctatccgac caaggctttg aactatctac cagaagtgtg agcccctacc ggaaggatta
     5221 catctcggat gatgactctg atgaagactc tgcttgctat ggcgcattca tcgaccaaga
     5281 gcttgtcggg aagattgaac tcaactcaac atggaacgat ctagcctcta tcgaacacat
     5341 tgttgtgtcg cacacgcacc gaggcaaagg agtcgcgcac agtctcatcg aatttgcgaa
     5401 aaagtgggca ctaagcagac agctccttgg catacgatta gagacacaaa cgaacaatgt
     5461 acctgcctgc aatttgtacg caaaatgtgg ctttactctc ggcggcattg acctgttcac
     5521 gtataaaact agacctcaag tctcgaacga aacagcgatg tactggtact ggttctcggg
     5581 agcacaggat gacgcctaac aattcattca agccgacacc gcttcgcggc gcggcttaat
     5641 tcaggagtta aacatcatga gggaagcggt gatcgccgaa gtatcgactc aactatcaga
     5701 ggtagttggc gtcatcgagc gccatctcga accgacgttg ctggccgtac atttgtacgg
     5761 ctccgcagtg gatggcggcc tgaagccaca cagtgatatt gatttgctgg ttacggtgac
     5821 cgtaaggctt gatgaaacaa cgcggcgagc tttgatcaac gaccttttgg aaacttcggc
     5881 ttcccctgga gagagcgaga ttctccgcgc tgtagaagtc accattgttg tgcacgacga
     5941 catcattccg tggcgttatc cagctaagcg cgaactgcaa tttggagaat ggcagcgcaa
     6001 tgacattctt gcaggtatct tcgagccagc cacgatcgac attgatctgg ctatcttgct
     6061 gacaaaagca agagaacata gcgttgcctt ggtaggtcca gcggcggagg aactctttga
     6121 tccggttcct gaacaggatc tatttgaggc gctaaatgaa accttaacgc tatggaactc
     6181 gccgcccgac tgggctggcg atgagcgaaa tgtagtgctt acgttgtccc gcatttggta
     6241 cagcgcagta accggcaaaa tcgcgccgaa ggatgtcgct gccgactggg caatggagcg
     6301 cctgccggcc cagtatcagc ccgtcatact tgaagctagg caggcttatc ttggacaaga
     6361 agatcgcttg gcctcgcgcg cagatcagtt ggaagaattt gttcactacg tgaaaggcga
     6421 gatcaccaag gtagtcggca aataatgtct aacaattcgt tcaagccgac gccgcttcgc
     6481 ggcgcggctt aactcaagcg ttagagagct ggggaagact atgcgcgatc tgttgaaggt
     6541 ggttctaagc ctcgtacttg cgatggcatc ggggcaggca cttgctgacc tgccaattgt
     6601 tttagtggat gaagctcgtc ttccctatga ctactcccca tccaactacg acatttctcc
     6661 aagcaactac gacaactcca taagcaatta cgacaatagt ccatcaaatt acgacaactc
     6721 tgagagcaac tacgataata gttcatccaa ttacgacaat agtcgcaacg gaaatcgtag
     6781 gcttatatat agcgcaaatg ggtctcgcac tttcgccggc tactacgtca ttgccaacaa
     6841 tgggacaacg aacttctttt ccacatctgg caaaaggatg ttctacaccc caaaaggggg
     6901 gcgcggcgtc tatggcggca aagatgggag cttctgcggg gcattggtcg tcataaatgg
     6961 ccaattttcg cttgccctga cagataacgg cctgaagatc atgtatctaa gcaactagcc
     7021 tgctctctaa taaaatgtta ggcctcaaca tctagtcgca agctgagggg aaccactagt
     7081 gtcatacgaa cctccaagag acggttacac aaacgggtac attgttgatg tcatgtatga
     7141 caatcgccca agtaagtatc cagctgtgtt cagaacgtac gtccgaattc cagactatgt
     7201 cgaactagat aacgcggagg agctggccga cgcaatcatt cgagaggttg agttaaagga
     7261 ggcatggctc acaagggtct tggggaactc agccgatcct gacgcttctg tgggcaagtg
     7321 ggaccggcgc ctagcgcagt gcggtggtat tgatgagatg tcaagtgggg tgcaggcaac
     7381 atacttcagt ccaaacggtc agctggtcgg cttagtggca tacattgatg ccgaatggat
     7441 ggatgaatag ctctgacgtt acgattcagg tgagacaacc agatgggcat tgcgtacaag
     7501 ctcagttgcc accgatgtgg ctacgagtct gatcttcttt acctaggcca aggtatggcg
     7561 atgcttcctg agcaaatagt cggaacgtgc acatgctgcg acaatctaac gacgatttct
     7621 ataaatgaaa gctacggagt atgctcactt tgtggggcta aggatcgtgt gatatttaca
     7681 agctatcagc atgaggcaag gccaagaaat ccctgctatc tagagagaag tttcaaatat
     7741 caatgcccaa gatgccatgc cttcagtatg gagcctccgg atctaccgga gatgctttgg
     7801 gactaatgct ccgctttgcc tcgggtatcc gttcgaccta tgtttaagag gaaacgcacg
     7861 tgtctgccgc caaagctctt gcctatgcac tttgtgacaa gttggaaagc aaaaaagttg
     7921 atgaagtcgt acgaaatctt gtttctagcg gctggaatat tagggaagtg gcctgggaag
     7981 cttcgtcctt tgatcatgaa atgccctact ttgacacggg gcgggacttc gatattggat
     8041 ttcctgacac gctgtcatcc aagattgagt ttttgaccgc gaatggatca atcgtccaag
     8101 cacgtgctcg cctgcacttc aagcaggctc taatttttgc caaggcgtcc aaacatgtcg
     8161 ccgcgctcaa gaactcattg gattactact atggatcgtc tgtaatcccc cctcaaaacc
     8221 acggaggcta tttgtagaaa attccattaa tatgaactca aggtgttccc tacggacgaa
     8281 tcagcgatga aggtggtgta cctggctatc caggcggcga ccaagaaatg gacgatgccg
     8341 atccgcaact ggaagccggc catgaaccgt tttatgatcg aatttggtga ccgtttaaat
     8401 ggccaccttt aactgaccgg caaaagcact tacacaaaag ggtttacagg ctctttcagt
     8461 cattccttta atgcgtaaat tgctctctaa ccactctctc agcccaccct tccatatcct
     8521 ctctcgatac ttgcagctcc cccaacccct ttggatgatt cacccctcta tgcccgtctt
     8581 gtccatataa ttgatcaaac aaactatttg gccaattcaa tgagctcttc accactccac
     8641 gccgtatctt ttcaaaatca ttccgccatg tttcgctatc aacgccactc aacactttgg
     8701 tagaaagcat tttcacccca tccgatgcat ccacctctag caatacaaat tcactgccat
     8761 tacgttgcac cccaacggct ttaatcactc ttggtgagcc atctttacac agatgtaatc
     8821 ggctacgccc aacttttggc aaaaccaagg tttcttcaaa aagcacccga catgcaaatt
     8881 tagtttttag aattgaaagt agctcatcaa aagcagcaaa tcgattagca aaaatagagt
     8941 tgtaattggt tgcatcctgc ttcccaccca catctgccgc tgctaggaca ccacctaagt
     9001 gtggctcatc agtactaacc aaattactat tttcacttgt tgttgcttct tctttttcta
     9061 aaatagtttg gctacttttt cttgccctgc gagatttttc aattcgacta ggtctactaa
     9121 aacttatcca tgtcggctca gcctctatga ctcgtgtgtc tgtgtctata ttggctgttt
     9181 cctcatcgtc caactgtaga tgctcatcat caacaactga ctctgttgaa accgctatgt
     9241 gctgcgtact accatcacct gcctcctttt cctgaaaaga ggcatggcta atagctgttg
     9301 tgctaggaag catagcgttg atttctaaac ctactatttc ctcaactaaa taatccttat
     9361 cctcgttaga agaacgtcct tttacatgta atttccaacc ctgcatgggc ggagggtcaa
     9421 agctaaagca ccagctttca acgccgttct taatttctct attttgttga tagtgcctaa
     9481 aaatactttc atacgaatcc ataacatctt gatccgaaaa caaccaaacc aaaagctgca
     9541 ctacggccga ctgctctaac gcccctttag gaaacgatga actgggtaag atccttatct
     9601 ctaaatgatc tcgctcaacc tcatactgaa cgtcgaactc ttgctgtaaa gcggtactgc
     9661 tcaaacagct tcgacagaaa taggagttaa ttaaaaataa tgaccgagct agctctaact
     9721 gtgggatgtg ataacgagtc ttgctatatg gtgtttcagc ttcgtaaata aatgaactct
     9781 gcgctccatc cttgttgcgt acggaagcaa aggacgagag attaggaaaa tcgattattt
     9841 tggctcgttg aagatccgat gcttcaaact caatcacacg atccgcctta tttatttgct
     9901 ttgttgtact gttaaccacc ttagctcgac ttaataaagg caaatgagta aatcgagtcc
     9961 atttccgttc ttgcattgga ttaaaccaaa caaaaatacg ccactcctta tgacccgagt
    10021 tacggaataa atgaccaata tgtacaacct gcacattgtc attaaatgta gctagcctaa
    10081 ccactcactc ttccccataa accatttcca agaatctttg tgcttcctca gttatccgct
    10141 ctttagataa cgttgcactt cttaataatc gccagcgcct aagctcaaca tcttcctgtt
    10201 taagcttaat aaaagcttgg ctaatccgtc taatttgata atcttccaca ctctctgagt
    10261 aacgctttaa gcaaagcgct accaaaggca gtttctgtag attttttgca agagaggttc
    10321 cgttaggagt ttgctttaac agccagctcg atgtcgctct tgggtgatca aggctactat
    10381 ctagacgctt tatgattctt aatagttgtc gtacagcaat tcgatctctt tggttccaat
    10441 caactctagg ggcgggtgcc agacgctctt gttgatgctg ttgattccag tgaactagcc
    10501 aatccctgtc atgtcggtaa agccaagcgt atagcacccc accctctaaa gactgtcttg
    10561 ccgccttaat tccttggtat ttatgcacta gttgctgcca gtctttatgc ttaacagata
    10621 aatcttcaga gttaggttgc acagactggc taacaggtct tgtcgttata gagtgctcag
    10681 taagagcact tgcctgctgt agcgcttcta taaccgttag ttttggcaat aaggcttgcc
    10741 acacaatact atgctgtaaa taactaaagg cttttctatg cttacggaat atacttttca
    10801 gccaacacgt gtccttgttc tctgccaact ttaaatccag tttctctagt gcctcatcac
    10861 taaaagtctg cctcactctc tccgccacca agtcatgacg aatgtgcttg cttttggtta
    10921 gccctagatc ctgcgctaag cgctgataaa acagcgtcca ctgctcaagg cttggggaaa
    10981 gctcttgcgc tcgtggagca tctaacagag gggctatata agcagctagt gctgttaatt
    11041 gagataggga gtctttgggg tagtctgaaa gcagctcagt atgacccaaa gcccaaaatt
    11101 gatgtcggtg atcatctaca gctctatcaa agaagactaa agcaccgtgt tttggacaat
    11161 atggcaaagc gggcaaatac caatctcgtt gccaaaaggc ttccccatac ctatttagct
    11221 gaagagcaac gcaatcaggg cagtatctaa agcggttatc gctcttaact ctagaagcag
    11281 cgactcctag cattaaatgc accgcacctt gcgcttggta ctccattaac cgaatagctt
    11341 cgtctcggcg ctccttgcct acaaacggag catataaagg gaataaggta tgctcataaa
    11401 taagctgctg aacagcgtaa cgtcctgttt gatgtagatg tcttgctatc acacctaaat
    11461 gcgagggcag acctaaggta gcgaccacct tgcggttgcc atacacctca tccaacagct
    11521 gcttaggact aacaatccct tgataaacgc ctgcccgtgc aatagtgcta taaatcagct
    11581 cattcgagta cggaacagga aagtttctca tggctaacct gcttgtttaa ataagctcgc
    11641 catatccact attacccctt tcccttttaa ccgttcatgc atggtttttt caggttggcg
    11701 ttgtgaatag atataacgta aatccgtatc aggcaagcta tcccagtcgc tgggcttgac
    11761 tacctttata gccgaaacct ttttactctt ggagggcttt tctagttctg acactaccgt
    11821 ttcgccttcc atcaaccact gcaaaacaag aggcagtaac ttttgtcttg tcatcgttgg
    11881 attctggcta aacgcttttt taatagtggg aattaacagg cttgaatcgt aatcctcttt
    11941 cagcatcaga tataaatgac gctgatcttc ggtatctaac tcttgaaggg ctttttcttc
    12001 tggtgtttgt tcttgtatcg ctgcgatatc tagctgaagt tggattaacc gtttatcaat
    12061 ctcgggaacg actagatcag aataacgagc aatgcgttct gggatacccg agcgtaatgc
    12121 ctctagcatg gggtgcacag gctttaactc atcttgatac acttgccgca ataaaccagc
    12181 ggtaatacgc tcattgccta aagctagcgc acggagctga gcgagtacaa aaagttttac
    12241 tacaatgtcc atcactcctt ggcttagctc ataccacaca tcacggacct catccgataa
    12301 cagcgcatct ttgcgttgta aaagctgtaa ttgccaaaga ttatccgtaa aagcgatcca
    12361 ctcttgattg ggctttccac gttgcgtttg ttgtatagga tcccagaata tagctccaaa
    12421 ccctgcccct ctacgtgcag accgcaaatc agcctcaaaa atctctcgtg ctttaggggt
    12481 accaatcaac atcactggta cgccaataat attcaccatc gtcacaaaaa agttcagcat
    12541 ctcttgagat ccacccgaac gagagcggct taaatgctga atttcatcaa taaccaacaa
    12601 ccctaaagca tgtgcattgg ctatttgcga catcaaagcc aacatggttt ctataccatg
    12661 acgttttaag ccataacgac gctcatagtt cgagcccaag gctcgatcca acgctctgaa
    12721 aaaattcaag cagatttctt ttagcgaacc attatgcgag cagtctattt tcaaatacac
    12781 cacctgctct acattgagtt cacgatggta aatcacctga ggatacgtgg ctagaatacg
    12841 atgaagagag gtcgtcttcc cactaccaga acaaccaatt aacaataagc tttgtgccgt
    12901 agatcgtgcc tcctcaaagc gaaatgtctc caactctccc gtttgaacac gctcataacc
    12961 attttgtaaa tgcttttgta aatctcctgt tttaggattt ctgcctacgt agccacctcg
    13021 aatcatgacc gaaatacgct cacttagtag caaatgcgta cctaatggct gaaaatagtc
    13081 atctggaata cgacaaatgg tatgagctct gataacacgg gacttttgca agtcagagga
    13141 agtaagctgt aaagaggatt tcagtgatgc agcactattc actgactctt gtaatggtgg
    13201 taaggcctcg ataaaaggat tatcacgata agcctctacc cccgtatcac gataaactgc
    13261 ttgaatccgg gtagcactca tgactcatcc ttttctggtg gatcctgaaa taattcaggc
    13321 acgtatgtgg gtaggctgta atcttcttga tcatccgctt ccactgcgtt gaaaggaata
    13381 actttagcct catcacctga agagcttggc ttcaaatgct ccgcacgttt tttacgctcc
    13441 gaggtcacgg cttctttttt attagtttta atctgcttaa tgcgtgttga tttgggctca
    13501 gtagtactgg gcgttaactt attcgctttc tgaatggttt gctgaataaa cgcctcaagc
    13561 tccctgcgtt tagttaactc atcctgcttc gcattggctt tattgtgttt ttcttgtgct
    13621 tgtatatccc aaacctccca aaatgagaga cctttaaact gccgactacg ttccgtcaga
    13681 ttacagcgcc aaaatacacg gctgccaact tgcggaaaca aataaatcgt atcaaccagc
    13741 actgggtcat aagccgcttc taaatgttga ggtctagcta tatcagtgct ccgctgcaac
    13801 caaccctcac gcagaatctc tgaccccgag taatacaaac cccacaaatt aacgccaaat
    13861 gaagaaatag agacctttcg gcgaggcagt aacgctactc gcaactgctc ttgctccaca
    13921 gcccttaaac tacctgtacg atgctgcata ccccattgcc atagctggac aggaatagac
    13981 ggtaaatctg taggaaaatc agcatctcga tcgtatttat ccatcaccag atggttattt
    14041 ctgaataaga tcgtacgcaa aataatttgt gtgaactcaa ataccgacag agatgcatct
    14101 aacctatagt ctgtttcacc atggcttttg atccgactgc cctctacaat gccaggtgca
    14161 aaggacttaa actcggcttg tagtgttcta aaagtgcttt ccactatgcc tttagcatcg
    14221 ccacgtctag gtggagcact ttccactcgc acattaaaac tagaaactaa ggcttcgacc
    14281 tgatgactca ttaattcgcc acggtccgct agcaacacat ctggcaaacc tacacacggc
    14341 cagtctgagc tactaatctc aatatcatgc tgggcacaaa tggccgtttt gtcagagcaa
    14401 gcatttacaa aagcctgcat cgccaccaca taagacggat tttcaaagcc gatataaaag
    14461 cccgtgatca tccgactaaa cacatcaatc acaatgtaaa gcgttggtct tcctatgatt
    14521 ttttggcgat catgatgatc cactaaataa atatcagcaa tcgtggcatc aatctcataa
    14581 cgactcccag ggcctaacgc ctgagaagtg gctgtactac ttaagggtcg tacgtctttt
    14641 ttatataccc ctgctttaac tctagacttt aagcgctgag ctttagggta ttctcgatca
    14701 taaaaataac gaaactgacg tagtgttggg taatcctctt ggggaatgcg aggaaaatac
    14761 tgagcaaaca agtccacaaa tcgtctatag gcaacggtgg tctttgtacc tttttgattt
    14821 aacaggtgct tttctatggt caacctaaaa aggcgttcaa tctcgggcgt taccttggtt
    14881 ccttcaccct taccatattc tctggctcgg ccaatctttg ctgttcctgt cgctgaacgt
    14941 ctttcccctg gtgcaccgct gtttttgtag tcaggaatta atgcattagg cgtttgacca
    15001 cgctgccagt aacggcgtaa caacttataa actgtagcct tagtaacctt atgttcttgg
    15061 accacatgct caacgagttc gcttctgact ttagggtcga aacgatcctt actattaata
    15121 ataggaagaa tttttcgata atcctcctcg cgcttctgga agctgacaga atctacagac
    15181 ggctcttcta aatcaagatg tacataaggg tcatcagttc taactaagcg gccttcatct
    15241 aaatactgca ttagcaacaa ctcagcccta gcttgtggaa ctcctttatc agcgcttatt
    15301 tgcatccaga caacttggcc atcctctata gccaaaatgc gatacggatc attatcaaat
    15361 agcacaacct cattaatttg ccacatagcg caactcctcc atattcacta cttggctaat
    15421 acagagatct gcacacttat ttgccctgaa agacttataa atattgaact taataaaacc
    15481 atttgcggtt aaggctcgta tctcactcaa tgttttgcct aactccaaat cataagcaat
    15541 atcaacctgc ttacagacat tgataatgtt ttcatctcct ttttcttgca ggatatgggc
    15601 caatggggat agttgtgcta aaagctccgc agaaacttct tctgttttca ctgaataaag
    15661 ccattcaata ttttctttta ctacgggatt tatttcttta tcagtaaaaa tgaaccaagg
    15721 aatttgcttt tgctgccaat agcgacgctc tagttctagt ttttctaagg tacgctcgtc
    15781 ttgtaaggct gctgcaggtt tgacttgaat agcaaactgc tcaaaaggac catctttgca
    15841 gtccactaaa aaatcagtag acataacctg atctacacca cgaataacag gatgcttaat
    15901 accactatct attgcaatct gcctggtatc actaggtaat aaggggaact gctcgcgtat
    15961 atctagcacg ctgctctccc actcaagact gagaaaaaca gcaagctcta agtcagatag
    16021 caaatgatgg actcgtcccg tcttatgaga ataaatacgg tgggaacgac ctgaagaagg
    16081 aacttcttgt actgttagcc atggaatata gtctttacca tgcccttggc cacgcccctc
    16141 tttaatacga cgggcaattt gcacttcaga aaatgaagag tttgctttag ccataacaaa
    16201 agtccagtat gctttttcac agcataactg gactgatttc agtttacaac tattctgtct
    16261 agtttaagac tttattgtca tagtttagat ctattttgtt cagtttaaga ctttattgtc
    16321 cgcccacaag ccctttttta tctatgatag tgattactca accgtaaccg attttgccaa
    16381 gttacgcggc tggtcaacgt cggtgccttt gatcagcgcg acatggtaag ccagcagctg
    16441 cagcggaacg gtgtagaaga tcggtgcaat cacctcttcc acatgcggca tctcgatgat
    16501 gtgcatgtta tcgctactta caaaacccgc atcctgatcg gcgaagacat acaactgacc
    16561 gccacgcgcg cgaacttctt caatgttgga tttcagtttt tccaacagtt cgttgttcgg
    16621 tgcaacgacg ataaccggca tatccgcgtc aatcagcgcc agcgggccgt gtttcagctc
    16681 gccagcagcg taggcttcag cgtgaatgta ggagatctct ttcagcttca atgcgccttc
    16741 cagtgcgatt gggtactgat cgccacggcc caggaacagt gcgtgatgtt tgtcagagaa
    16801 atcttctgcc agagcttcaa tgcgtttgtc ctgagatagc atctgctcaa tacggctcgg
    16861 cagcgcctgc agaccatgca caatgtcatg ttcaatggag gcatccagac ctttcaggcg
    16921 agacagcttc gccaccagca tcaacagcac agttaactga gtggtgaatg ctttagtgga
    16981 cgccacgccg atttccgtac ccgcgttggt catcagcgcc agatcggatt cgcgcaccag
    17041 agaagaaccc ggaacgttac agattgccag cgaaccaagg taacccagct ctttcaacag
    17101 acgcaggccc gccagggtat ccgcggtttc gccagactgt gacaaggtga tcatcaggct
    17161 gttacgacgc acggcagatt tacgatagcg gaattcagag gcgatttcga cgtcgcacgg
    17221 aatacctgcc agcgattcaa accagtagcg ggaaaccata ccggagttat aagaagtacc
    17281 acaggcgagg atctgaatat gctcaacctt cgacagcagt tcgtcggcgt tcggtcccag
    17341 ctcgcttaaa tcaacctgac cgtggctgat gcgcccggta agggtgtttt tgatcgcgtt
    17401 cggctgttcg tagatctctt tctgcatgta gtgacggtaa atacctttat cgcccgcgtc
    17461 atattgcaga ttggattcga tatcctgacg ttttacttcc gcgccagttt tatcgaagat
    17521 gtttaccgaa cggcgagtaa tttccgcaat atcgccctct tcaaggaaga taaagcgacg
    17581 ggtcaccggc agcagcgcca gctggtcaga agcgataaag ttttcgccca tacccaggcc
    17641 aatcaccagc ggactaccag aacgtgccgc cagcagggta tccgggtgac gggagtccat
    17701 gatcactgta ccgtacgcac cgcgcagctg cgggatagca cgcagaacag cctcacgcag
    17761 agtcccgcct tgtttcagct cccagttcac cagatgggca atcacttcgg tgtcggtttc
    17821 agaaacgaag gtatagccac gcgcttttaa ctcttcacgc agcggttcat ggttttcgat
    17881 gatgccgtta tgcaccacca taatgtgttc agaaacatgc ggatgcgcgt tagcttctga
    17941 aggttcaccg tgggtcgccc agcgagtgtg agcaataccg gtgccgccat gcagaggatg
    18001 ttcttccgct gcctgagcca gcatctggac tttaccgagg cgacgcaggc gggtcatatg
    18061 accttccgca tcaacaacgg ccagaccggc agagtcatat ccgcggtatt ccagacgacg
    18121 taaaccttca agaaggattt ctgctacatc acgttgcgcg atcgcgccaa caattccaca
    18181 catagttttt gattccgatt tatatcgttg tcggtcaacc tgtatgcccg ttttttcggg
    18241 cgccccgagc cttgtagaga gtggggttat ttttatagtt actgcttgtg ggagggagat
    18301 tatgttatct cctcatccca gatgaccgga ttacccggcc agaattactt tttctttacc
    18361 ggacgacgcc agccttcttt ctgagtctgc ggcacacggc tgatagctaa tgcattttcg
    18421 ccgacattac gcgtcacagt tgtacccgca gcaatggtcg cgcctttgcc tactgttacc
    18481 ggggccacca gctgagtgtc ggaaccgaca aacacatcgt cgccgataat ggtcttaaat
    18541 ttattcgcac catcgtagtt gcaggtaatg gttcccgcgc cgatgttaac gttatcgcca
    18601 atttccgcat cgcccaggta agtcagatga ccagctttcg agcctttacc cagacgcgct
    18661 tttttcatct caacaaagtt accgacgtgt gcaccttcca gcaactcagc accaggacgc
    18721 agacgggcaa acgggccaat agtacaggcc gctgccagat tcacgtcttc cacaacggta
    18781 tacggactga tttcgcaatc atcgccaatc acgctgtttt taatcacgca accggtgccg
    18841 attttcacgc gatgaccgag agtcacgttg ccctcgatga taacgttagt atcaatttca
    18901 acatcgcgcc cgtgagtaag cgtaccgcgc agataaaaac gcgccggatc gcgcagcata
    18961 acgcctgcta acagcagttt ttcagcctgt tcggactggt aaacgcgctc cagacgggag
    19021 agttgcaggc ggttattcac accttctact tcgcttaaac gttgcggatg aacggcgacg
    19081 atttcacgcc cttcctgata cgccagcgca ataatgtcgg tgatgtagta ttcgccctga
    19141 gcattattgt tggtcagctt cgccagccag cgtttcatat ctgcgccgtt agcgatcaga
    19201 atgccggtgt tgatctcctg aatctgacgc tgctcgtcgg tggcatcttt gtgctcaaca
    19261 atgccggtaa ctttgccatt ttcacgggtg atacgtccat aaccggtcgg atcatccagt
    19321 ttcaccgtca gcagaccaat gccaccctgc ggtttagcat cacgcaggcg ctggagtgtt
    19381 tcgacagaga tcagcggcac gtcgccgtag agcattaaaa tgtcttcatc atcggcaaag
    19441 aaaggtgcgg cctgctgcat tgcatgaccc gtacccagct gctctgcctg aagcacccag
    19501 ttaaggttgt cgtctttcag cgcctgttta agcagatcgc cgccgtgacc gtacaccagg
    19561 tgaacgtgcg ctgcgcctaa ttcattcgca gcatcaatga catgctgaac catcgctttc
    19621 ccggcaaggg tatgcagcac tttcggaaga tcggaataca tgcgcgtgcc tttgcctgcg
    19681 gcaaggatca ctacgctcat agcattattc aacatacgcg tcctgactgt aatttgagaa
    19741 cgaatttaaa ccgcttcacc ttgaaaaaac tacatttttt tcatcgtgaa atggacagag
    19801 gataaattgt tcaataacgg attatccccg ctgacgaaag tgccattttc gaccatcgtc
    19861 acgccttttg tctgcagaaa attaaggcag taccttcatt taagcgtcag gtggatgttt
    19921 ttgctcttat ttcgatcaat gaataaacgg gaaaacaggg gtgttttata tcagcaggat
    19981 ctatgtgaac gctcttcagg acggatcacg cgtaaaaaaa aaccagcctg tttccagact
    20041 ggcttttgtg cttttcaagc cggtgttaca tcgctttttt ggtcaactcg ataacgcgca
    20101 gctgcgcgat cgctttggcc agttccgcag acgcctgagc gtaatctacg tcgccgtgag
    20161 agctgctaat gtgctcttca gccttacgtt tcgcttccat ggctcgcgct tcgtcgagat
    20221 cctggccgcg aattgcggtg tcggccagaa cggtcacgtt gccagactgc acttcaagaa
    20281 tgccgccaga cagatagata aactcttcgt gaccgtgctg tttcacgatg cgaatcatac
    20341 caggcttaat ggcggtgagc agcggtgcgt ggccagggta gatccccagt tcaccttcgc
    20401 tacccgttac ctggattttc tcgaccagac cagagaacat ttgttgctct gcgctgacga
    20461 cgtccaggtg gtaagtcatt gccatatcac cctccgatta aggcgttaaa gttttttggc
    20521 tttttccaca gcttcttcga tggaaccgac catgtagaac gcctgctccg gcaggtgatc
    20581 gtattcgcct tccatgatgc ctttaaagcc acggatggtg tctttcaggg agacgtattt
    20641 acccggagaa ccggtgaata cttctgccac gaagaacggc tgggacagga agcgctggat
    20701 cttacgagca cgcgctacca ccagtttgtc ttcttcagac agttcatcca tacccaggat
    20761 ggcgatgatg tctttcagtt cctgataacg ttgcaggatg gactgaacgc cacgcgcggt
    20821 gtcgtagtgt tcctgaccaa ccaccagcgg gtccagctga cggctggtgg agtccagcgg
    20881 gtcaacggcc gggtagatac ccagagacgc gatctgacgg ctcagtacca cggttgcgtc
    20941 aaggtgcgca aaggtggttg ccggagacgg gtcagtcaag tcatccgcag gtacgtatac
    21001 cgcctgtacg gaggtgatag aaccagtttt ggtggaggtg atacgttcct gcagaacgcc
    21061 catctcttcc gccagggtcg gctgataacc taccgctgaa ggcatacggc ccagcagtgc
    21121 ggatacttcc gtaccggcca gggtgtaacg atagatgttg tcaacgaaca gcagaacgtc
    21181 acgaccttcg tcacggaatt tctcagccat ggtcagaccg gtcagagcaa cgcgcagacg
    21241 gtttcccggc ggctcgttca tctggccata caccagggat actttgtcga taacgttgga
    21301 gtcggtcatt tcgtggtaga agtcgttacc ctcacgagta cgttcaccta cgcccgcaaa
    21361 cacagagtaa ccggagtgct cgatcgcgat gttacgaatg agctccatca tgtttacggt
    21421 tttacctaca cccgcaccac cgaacagacc aactttaccg cccttagcga acggacacat
    21481 caggtcgata actttgatac cggtttccag cagttcctga gagtttgaca gctcttcgta
    21541 ggaaggtgct gcgcggtgaa tcgcccaacg ctcttcttca ccgatctcgc ctttcatgtc
    21601 gaccggttca cccagtacgt tcatgatacg gcccagagtc gctttaccta ccgggacttc
    21661 gatcgggtgt tcgaggtctt ttacatccag accgcgacgc agaccgtcgg aggaacccat
    21721 tgcgatggta cgcacgatac cgccgccgag ctgctgctga acttccagca ccagacgctc
    21781 attaccattt tgcacctcaa gagcatcgta cacgcgcggt acggcatcct gagggaattc
    21841 gacgtcaact acggcgccga ttacctggac aatctttcca gtagccatct taaatcctct
    21901 acgaaataac ctgtttaaac cgcggcggcc cccgagacga tctcggtgag ttcctgagta
    21961 atgctggcct gacgagcttt gttgtatacc aactgcagct ctttaatcag gctgccgcca
    22021 ttgtcggtcg cggctttcat cgccaccata cgggcggcct gctcgctggc caggttttca
    22081 accacgccct gataaacctg agattcgaca taacgacgca gcagggtatc cagcaacgcc
    22141 ttcggatcgg gttcgtacag gtaatcccag gatttatgtt tcagatcatc atcatctgat
    22201 gccggtaacg gcagcagctg gctgatggtc ggaacctgag acatggtgtt aataaatttg
    22261 ttgctgacaa tgtaaagctt gtccagacgg ccttcgtcgt aggcctgcaa catcactttt
    22321 accggaccga tcagttcgga cagggaaggg ttatccccca tgccggtgac ctgggcaaca
    22381 acattgccgc ccacggagtt gaagaacgac acgcctttcg agccgatcat tgcgagatcg
    22441 cattgaacgc ctttgtcggt ccaggtcttc atttccgcca gcagtttttt gaacaggtta
    22501 atgttcaaac caccgcacaa accacggtcg gtcgacacca ccaggtagcc cacgcgttta
    22561 acgtcgcggt cttccaggta agggtgctta tattccagat taccatgtgc aaggtgacca
    22621 atcactttgc gcatggtttc tgcataagga cggctggccg ccatgcgatc ctgcgattta
    22681 cgcattttgg aagcggcgac catctccatc gctttagtga tcttttgcgt gttctggacg
    22741 cttgcgatct tactacgtat ctcttttgcg ccggccatga gcttctcctc aatgccttgc
    22801 ggcctgccct aaggcaagcc gccagacgtt accaggattg ggttgctttg aaggaatcga
    22861 ggatgccttt cagtttgcct tcgatttcgt cgttgtagcc accggtctgg ttgatctctt
    22921 gcatcaacgg agcgtgatca cggtcgacgt aagccagcag agcggcttcg aagctgccaa
    22981 ttttcgacag ttcaacatcc gccaggtaac cacgttctgc tgcgaacaga accagagact
    23041 gctgcgcaac ggacatcggc gcatactgtt tctgtttcag cagttcggtc actttctgac
    23101 cgtggtcaag ctgcttacgt gttgcatcgt caaggtcgga tgcaaactga gagaacgctg
    23161 ccagttcacg atactgtgcc agagcggtac ggataccacc ggacagtttt ttcatgatct
    23221 tggtctgtgc tgcaccacca acacgggata cggaaatacc cgggttaacc gcaggacgaa
    23281 taccggcgtt gaacaggttg gtttccagga agatctgacc atcggtaatg gagattacgt
    23341 tggtcggaac gaacgcagaa acgtcacccg cctgagtttc gataatcggc agtgcggtca
    23401 gagaaccgtt tttccctttc acttcacctt tggtgaaggc ttcaacgtat tcggcgttaa
    23461 cacgtgcagc acgctccagc agacgagagt ggaggtagaa aacgtcgccc gggaatgctt
    23521 cacgtcctgg cggacgacgg agcagcaggg agatctgacg gtaagcaaca gcctgtttag
    23581 acaggtcatc gtaaatgatc agcgcatctt caccgcggtc acggaagtat tcgcccattg
    23641 cgcaaccggc atacggtgcc aggtattgca gtgcagcgga ttcagacgcg gttgctacca
    23701 caacgatggt gttagccagt gcgccgtgct cttccagttt acgtaccacg ttagaaatgg
    23761 tggacgcttt ctggccgata gcgacataga tacatttgat accggaatcg cgctggttga
    23821 tgatggcatc gatagccagt gcggttttac ctgtctgacg gtcaccgatg atcaattcac
    23881 gctgaccacg accgattggg atcatggagt caacggcttt ataaccggtc tgtaccggct
    23941 gatctacgga ctgacgttcg ataacgcccg gagcgattgc ttctacagca gagaagccgt
    24001 cgtgatccag cggaccttta ccgtcgattg gtgcacccag agtgttaacc acacggccca
    24061 gcaggccacg gccaaccgga acttccagga tacggccagt acacttaact ttcatgcctt
    24121 cggcaaggtc agcgtacgga cccataacaa ccgcacctac agagtcgcgc tcgaggttca
    24181 gtgcgatagc gtaacggtta cccggcaggg agatcatttc accctgcata caatcggcca
    24241 ggccgtgaat gcggataaca ccgtcactta cagaaacaat agtaccttcg ttgtgagctt
    24301 cactcacaac attgaactga gcaatgcgct gcttgatcag ttcgctgatt tcggtggaat
    24361 tcagttgcat gctccagtcc ccttaagact gcaagacgtc tgcaaggcgc tcaagacgac
    24421 cgcgtacgct gccgtcaatg accatatcac ccgctcggat gataacgcct gccattacag
    24481 acttatcgat tttgcaattc agcttaactt tgcgtgacag acgtttttcc atcgcagcag
    24541 aaattttcgc gagctgttgt tcactcagtg cggcagcgga aatgacgtct acctcagcgg
    24601 tagcctcact cacggcacga aggtgaataa actgctccag aacatccggg agcgcgttaa
    24661 gacgaccatt ttcagccatt acccgaatca ggttctgacc gttttcgtcc agttgctcac
    24721 cacaaactgc gataaacgac tcggcgagcg tttctggcgc aagcgcgcca gagagaagct
    24781 ctgccatttg ttcgtttttg gttacctcgg cggcaaacgc cagcatgtcc tgccagcgtt
    24841 ctacactttg gtgttcgacg gcaaagtcaa aagctgcttt ggcgtagggg cgagctaccg
    24901 taataaattc agacatcagc ccctccctcc ttacagttca gcgacaagtt tatccacgat
    24961 gtcgctgtta gcagcttcat ccacggaacg ttcgatgatc ttctcggcgc cagcaacagc
    25021 caggatagca acttgcttac gcagctcttc acgggcacgt ttacgctcgg cttcaatttc
    25081 tgcctgcgcc tgggccacga ttttagtacg ttcctgttct gcctcagctt tcgcttcgtc
    25141 cagaatctgc gagcggcgtt tgttcgcctg ctcgatgatt acctgggctt ccgctttcgc
    25201 ttttttcagc tggtcggtcg cgctggcctt tgcaaggtca aggtccttat gtgctcgttc
    25261 tgcggaagca aggccgtcag caatttcttt ttgacgtttt tcgatggctg ccattaatgg
    25321 cggccatacg tacttcatgc agaacagaac gaacaggaca aacgcgatgg cctggccgag
    25381 gattgttgcg ttaagattca cagcacaatg cctctattta gttaacgttc tgatattgct
    25441 ctttaaataa aagcaacgct tactacgcga cagcgaacat cacgtacaga cccagaccta
    25501 cagcgatcat cgggatagca tccaccagac ccataacgat aaagaactga gtacgcagca
    25561 gaggaatcag atcaggttga cgcgctgcgc cttccaagaa tttacccccg aggatgccga
    25621 taccgatcgc agcaccgatt gccgccagac ccatcatcac agcggcagcc atgtacagca
    25681 gatccatatt caggttttcc atgacagtct ccagtttgtt tcagttaaaa cgtagtagtg
    25741 ttggtaaatt aatgttcttc agacgccatc gacagataga cgatcgtcag aaccatgaag
    25801 atgaaggctt gcagcgtaat gatcaggatg tggaaaatgg cccacggcac attcaggatc
    25861 cactgtgacc accacggcaa cagaccagca atcagaatga aaatcagctc accggcatac
    25921 atgttaccga acagtcgcaa accgagtgaa actggtttgg acagcaggct taccccttca
    25981 aggattaagt tgacaggaat gaacgcccag tgattgaacg gctgcagcgt caactctttc
    26041 gtgaagccgc cgatgccttt cattttgatg ctgtagaaca gaatcaggat aaatacgccc
    26101 aatgccatag acagcgttac gttcacgtcc gcagacggaa ccacacgcag tgcaggcaga
    26161 cccagtacat gttcagcaat gtacggcagc aggtcgatag gcagtaaatc catcaggttc
    26221 atcaggaata cccagacgaa gatcgtcagg gccagcggag caatcagctt gcttttgcca
    26281 tggtacatgt ctttcacgct accattaaca aagccgatca ccagctcaat cgcggtctga
    26341 aacttacctg gcacaccgct ggtcgccttt ttggctacgc tacggaataa aaccaggaac
    26401 aacagaccca gcaccaccga gaagaacatg gagtcaatat tgattgtcca gaaggtggct
    26461 ggggggtttt gtggatccac cagcgagaat gtacgcaggt ccagctgaag gttattcagg
    26521 tggtgtccta tgtaatcctg cggcgtcata ttttctgaag ccatgatgcc ttttaccctt
    26581 tgttgttaat tacagccggt gccagtatct gaaccaccag caccaaaacc cacgtaacga
    26641 tcagcggcaa gaataccgcc tttaaaaccg ccaacgccac caccagtaac accaacatcg
    26701 ccagaacttt gaaagcttcg ccaaatgcga atgtccaggc cacccggcct ttcgctggtg
    26761 tatgcgcctg gtgacgccag gcaaatatca taaacaaaac gttaggcaga aagactgcca
    26821 ggcccccgct tattgcagag acgccccaga aggggtcttt gaggctgaac agcaatccac
    26881 ttgctatcac caccagtaac tgaacgagca gaagcttccg agcaacgttt cgactcacga
    26941 gcgacacaga catcacgttt ttcactcctg ctcccttcga ggtatgccgc gtgtcgtata
    27001 aaactttctt taaggcttag agtcaagcat caaaaagcgg tcaaattata cggcgcgccc
    27061 ccgtgatttc aaacaataag tagccaaaag gtgaataaat gtttaaatat ttttccagtg
    27121 catacaattg cgacttttct gctaaccctg ttcgatcatg aaaaactgta aataacgcgt
    27181 aaacactggt gataaagcgt gcttcagatc acatattgcg catgttcgcg cacagcatat
    27241 ttatttactt ggcaaatgat gcctttgcaa gtttatgata tttcagtcta aaaacagata
    27301 ctgttttaat aaatgacatt tacacaacaa aaaccaccca ttgacatttt taataatgtt
    27361 ttagcagcca atgatggttc ttagcgccga tttttagcag actgatattt tcactaatga
    27421 cttattttct gcttaccaaa aaaagccacg ttatcttgtt gatgcaaaag agtgaacgtg
    27481 gcgttaaatg taaccagtta tatcagtaga aaacctggtt gttgttaaca gtctaaccgg
    27541 tcaatttttt atgatttttt tgataaaaat taaattttat ttgctttaat caccaccaga
    27601 tgacgttcgc catccagggc tggaacctga agtttaacca ctgattcgac ctgatattct
    27661 tcgggcaaca aagcgatttc atcttccggc atttgccctt tcagcgcgta gaaacggcct
    27721 tgctcaccag gaagatggtg gcaccagctc accatatcgt tcagagaggc aaaagcgcgg
    27781 ctaattacgc catcaaatgg cggctctgaa ggaaactctt ctaccctgct ctgtactggt
    27841 tcaatattct ccagtttaag ctcatgttgc acctgacgaa ggaaacgcac gcgtttacca
    27901 aggctatcca acagagtgaa atgggcttca ggacgcacga tagagagtgg aatgcctggc
    27961 agtcctggtc cggtgccgac atcgataaac cgttcacctt gcagatacgg tgccaccaca
    28021 atgctatcga gaatatggcg taccagcatc tcattaggat cgcggaccga agtcaggttg
    28081 tacgctttgt tccatttatg cagcatattc acgtaggcaa taagctggtt tttctggtga
    28141 tcggtaagcg aaatacctgc gtctttcagc agtaaggaga gtttgttgag cacggtgatt
    28201 acctgttctt gatgcgttat gcgctacgac gcagcatacc ctgttttttc agccacacca
    28261 gcagaatgga gatggccgca ggcgtgacgc cagaaatacg cgaagcttgg ccgatagagg
    28321 ctggtttgtg atcgttaagt ttggcgatca cttcgttaga aagaccggat acctggcggt
    28381 aatccagtgt cgcgggtagc agggtgttct cgttacgcag ctgcttttcg atctcatctt
    28441 gctggcgcgc gatataacct tcgtatttaa cctgaatctc aacctgttcc gccgcctgtt
    28501 cgtctgtcaa cgcaggggca aacggcgtca gcgtggttaa tttttcataa gtcatttccg
    28561 gacgacgcag cagatcttca ccactggctt cacgggaaag cggcgcagtc aggtgagcat
    28621 tcacttcggc tgcagcttcc gccgacgggg ttacccaggt cgatttcaga cgctgacgct
    28681 cacgctcgat attctcaagt ttctcgttaa agcgcgccca acgttcgtca tccaccaggc
    28741 ccagttcacg accgatttca gtcaaacgca aatccgcatt atcttcgcgt agcatcagac
    28801 gatattctgc gcgcgaagta aacatacgat acggttcttt ggttcctaaa gtgcacaggt
    28861 catcaactag tacgccgaga tacgcctgag aacgtgccgg agcccaacct tctttgtcag
    28921 cagacagacg ggcagcgtta agaccggcca gcaaaccttg cgcagcggct tcttcgtaac
    28981 cggtagtgcc gttaatctga ccagcaaaga acagcccctg gataaacttg ctctccagcg
    29041 tcggtttcag gtcgcgagga tcgaagaagt catactcaat ggcataaccc ggacgcacga
    29101 tcttcgcgtt ttccatcccc tgcatagagc ggacgatttg catctgcaca tcgaacggca
    29161 ggctggtgga gataccgttc ggataaattt cattagaggt cagtccttcc ggttcaagga
    29221 agatctgatg ctgatttctg tcggcgaagc gcatgacttt gtcttcgatc gacgggcagt
    29281 agcgtgggcc gacaccttcg atcacccctg catacattgg gctacgatcg aggttactgc
    29341 ggatcacatc atgggttttc tcgttggtat gagtgatata acacggcacc tgctggggat
    29401 gctgggacgc attgcccata aacgagaata ccggcattgg gttaccgcca tgctgttgcg
    29461 ccagcacact aaagtcgata gttcgagcat caatacgcgg tggtgtcccg gttttcagac
    29521 gaccaacgcg cagcggcagt tcacgcaaac ggcgagaaag cggaatggac ggcggatcac
    29581 cagcacggcc accgctgtaa ttatccagac cgatatgaat tttaccgtcg aggaacgtcc
    29641 caacggtgag cacgacggct ttggcacgga acttcagtcc catttgggta acagcaccga
    29701 ccactcgatc gttttcgaca ataagatctt caaccgcctg ctggaagatc atcaggttcg
    29761 gttggttctc cagcgccgta cgtaccgcct gacggtagag cacacgatcc gcctgagctc
    29821 gggtagcgcg aaccgccggt cctttgcttg cgtttagtat cctaaactgg atacccgctt
    29881 gatcgatcgc tttcgccatc agaccgccga gtgcatccac ttcttttacc agatgtccct
    29941 tcccaatacc gccgatcgcc gggttgcagc tcatctgccc cagagtgtcg atattgtgtg
    30001 tcaaaagcag agtctgttga cccatacgcg ccgcggccat cgcggcctcg gtgcctgcat
    30061 gacccccgcc aatgatgatg acgtcaaaag gatccggata aaacatggtg attgcctcgc
    30121 ataacgcggt atgaaaatgg attgaagccc gggccgtgga ttctactcaa ctttgtcggc
    30181 ttgagaaaga cctgggatcc tgggtattaa aaagaagatc tatttattta gagatctgtt
    30241 ctattgtgat ctcttattag gatcgcactg ccctgtggat aacaaggatc cggcttttaa
    30301 gatcaacaac ctggaaagga tcattaactg tgaatgatcg gtgatcctgg accgtataag
    30361 ctgggatcag aatgaggggt tatacacaac tcaaaaactg aacaaccgtt gttccttgga
    30421 taactaccgg ttgatccaag cttcctgaca gagttatcca cagtagatcg cacgatctgt
    30481 atacttattt gagtaaatta atccacgatc ccagccattc ttctgccgga tcttccggaa
    30541 tgtcgtgatc aagaatgttg atcttcagtg tttcgcctgt ctgttttgca ccggaatttt
    30601 tgagttctgc ctcgagttta tcgatagccc cacaaaaggt gtcatattca cgactaccaa
    30661 taccgattgc gccaaagcgg accgcagaaa gatcgggctt ctgttcctgc aatgcttcat
    30721 agaaaggaga aaggttgtcc ggaatatctc cggcaccgtg ggtggagctg ataatcagcc
    30781 agatccccga ggcagataaa tcttccaaca gcggaccgtg cagcgtttcg gtggtaaaac
    30841 ccgcctcttc cagcttttca gccaagtgtt ctgctacata ttcggcaccg ccgagggtgc
    30901 tgccgctgat aagagtgata tctgccataa accgccacct ttattaagag tggcgtattg
    30961 tacgctgtga acgcgttggg atctacctgt ggaaaagtat gggattaaaa aagccgatca
    31021 gggcttgata gtacgcatga tcgggttttg caggacgatc aatgtctcgg tggactgaat
    31081 ttcatcaatt gtttggatct tgttgataag tacatgctgg agagcgtcga tcgaacggca
    31141 cattactttt ataaagatgc tgtagtggcc tgttgtgtaa taggcttcag tgacttcatc
    31201 aaggctttcc agctttgcca gcgcggaagg gtagtctttg gcgctcttta atataatgcc
    31261 gataaagcag cctacgtcat aaccgagctg cttcgggctg acatcaatac gcgccccggt
    31321 aatgatcccc gcctgcttca ttttctctac ccgaacgtga atcgtccccg gactgacgcc
    31381 aaattgtttc gccagttcgg cgtaagcggt gcgcgcattg cccattaatg cttccaggat
    31441 tccacggtcc agattgtcga tcagataatt ttccatagga ttttcttatg cagattgatg
    31501 attcattcta ttttagcctt cttttttaat gaatcaaaag tgtgttaggc tttttattga
    31561 atgattattg catgtgtgtc ggtttttgtt gcttaatcat aagcaacagg acgcaggagt
    31621 ataaaaaatg aaaaccgctt acattgccaa acaacgccaa attagcttcg tgaaatctca
    31681 cttttctcgt caactggaag aatgtctggg gctgatcgaa gtccaggcac cgattcttag
    31741 ccgtgtgggg gatggcacgc aggataactt gtcgggctgt gaaaaagcgg tgcaggtaaa
    31801 agtgaaagct ctgcctgatg cccagttcga agtggttcat tcactggcga agtggaaacg
    31861 tcagacctta gggcaacacg acttcagcgc gggcgaaggg ctgtacacgc acatgaaagc
    31921 ccttcgcccc gatgaagacc gtctttctcc gttgcactcg gtctatgtag accagtggga
    31981 ctgggaacgc gtaatgggcg acggtgagcg tcaattctcg actctgaaaa gcacggtaga
    32041 ggcgatctgg gcgggaatta aagcaaccga agctgcggtt agcgaagagt ttggcctggc
    32101 accgttcctg ccggatcaga tccacttcgt acacagccag gagttactgt ctcgttatcc
    32161 ggatctcgat gccaaagggc gtgagcgggc gatagcgaaa gatcttggcg cggtattcct
    32221 tgtcgggatt ggcggcaagc tgagcgatgg tcatcgccac gacgtgcgcg caccggatta
    32281 tgatgactgg agcaccccgt cagagctggg tcatgcgggt ctgaacggcg atattctggt
    32341 gtggaaccct gtactggaag atgcgtttga gctttcttcc atggggatcc gcgtggatgc
    32401 cgacacgctg aagcatcagc tggcgctgac cggtgatgaa gatcgtctgc agctggaatg
    32461 gcatcaggcg ctgctgcgcg gtgaaatgcc gcagaccatc ggcggcggta tcggccagtc
    32521 tcgtttgact atgctgctgc tgcaactgcc gcatatcggc caggttcagt gtggagtatg
    32581 gccagctgct gttcgcgaga gcgtcccttc tctgctgtaa taatttatcg ccgccagcgt
    32641 ctgagcaggc ggcttcgcat cccggtatca aagcgccaga tatgatcgaa aatgcgcatg
    32701 atgccgggtt tgccgtgtgc cgacatcgcc acggcatgaa agcgatgctg atgtacccgc
    32761 tgcagctctt tcactttact cgtcacgtcg tcaggcaacc gctgagcgat aaaatcagaa
    32821 atcaccaccg catcggcatc aaaccattcc ctgctttgca agcgttccat aatggcgcga
    32881 aaacaactgg caagatcggt gccgccacga aactgctggc ttaaaaaacg gattgcttgt
    32941 tcgatgcctt gtgggcctga aagctcataa cggacgatct cggtggaaaa tagcataata
    33001 tagcagcgcc ggttttctgc gagagcaatg cgcatcaagg ccaggcagaa cgctttcgca
    33061 cactgttcat taaagccgcc cattgagccg gaagcatcca cacagacaat aaacggcccg
    33121 cgcggctgtt catcgtaatc tttatgtacc accggacgtt cgatcacttt ttcacgccac
    33181 gactcaccgt gcaggcgata ggtgagcaac tgtttttcca ccagccgacg gtaaaactca
    33241 tactccagtt ccgttatccc tagtgtcgcc agttctggcg gcaggagacg taaaatatca
    33301 tcgctttgtt gcagaccatc aacttgctca ggaaccgtcg ccggttcgcg caccatggtg
    33361 cggaaggttt ccatctgcgc atcgttgcgc ggtattgatt tggcttcccg agaacgcccc
    33421 agctgctctg ccaggcgttt cagttccggc tgttcgttaa gaaattcacc gtatttcaca
    33481 atcaactgat agtcgccacg tttaagctgg ccggcgctca tatcccacag acgaccagct
    33541 gcggtattgt tatctgcgag aatcggttca agttgtccgc tcagcgtcat gcgttcctga
    33601 acttcactta acagttgttc gcgttcttct tctaatagct gttgatttaa cgtcgttgct
    33661 tgcacgatca gacttaaacg ccagcgctgg agaaaaagcg tgtgtaacgc tgaagttatt
    33721 gtgctgttag catcaaccaa ctgccgggct tgttctgccc atggggaatt cagacgatgc
    33781 agtaagtcca ggatctgtgg tagctgcaca ataaactgcg gcgtggagag gagctggctt
    33841 tgctgatagc acatcacctc ttcggtgagt tctggcggga ctcgggcatc tttcagccga
    33901 ctgcgcagcg cctcacgcca gcggggaaca tcatcagtga ttgctgcctt cagtcgtggg
    33961 aatttttcaa agaagaccgc cagctgcggt gaggccagca gtgcgatgat catctcttcg
    34021 atcaatccct cttcgctgac ggccagcatc acattaagcg tatccagcgt tagcattgtt
    34081 gtgcctggcg aatctgtgca ccgacatcct gtaggctggc ttcaatgcga cctaaccagt
    34141 cgccagggat aaacagacat ttttgctgtt cactgaataa agcgtgttgc ttacgccagt
    34201 cgctttcaag ctcttccagt tgttgtttta tttcacctgg cagaccttca gccgatgaac
    34261 cgggaagtgc cagcgtactg ccttgtaaac ttacatcgcg tacaacaaga tgttgggtgc
    34321 tatcaacttc cagattcagt ttctgggcaa agccgatacc gttcagtttg ccgcgaattt
    34381 caccaccttt actcagccac tgttccagcg cgctacgctc aaaggagata tgaaccactt
    34441 ccatatcatg cagttttaac ggtttttgca gcagcagagt cagagtggaa gcagtaacgt
    34501 taacagggag ttgatactgc tgacgacggc taaaaatgcc gcccagacga attaccgtta
    34561 aggctgtttt atcgctttgt tgctgctgaa gttgcaggtg acgttgcaca atcgcgccca
    34621 ggcgggtcaa catcccttgc tgttgccagg cgtgaccggt catcaataca tcaatttgtt
    34681 gttgtatcaa attcaggctt tgcgcgtcat accacaggca atctttcagc aaaatgagat
    34741 ctaccggggc aacagcactg cgaccgctaa aaaaggcgct ggcctgcaat aatcggatcg
    34801 cttttttcca gcgacgatcc gagacataag gcgcatccgg taatttatcc agttgctggc
    34861 gcagcataaa aatcagctca aatacatgat cgggcagcgt aatttcacca atctctttct
    34921 gccagcgttc atattcttca tctgtgacct gcaaggcatc aggaaccgga ttgtcgtttt
    34981 catcctgttg actggtcagc atggagcgga aattcgcttt atcctgcact ttatctaacc
    35041 acagacgaat cagcatgcgg tcatataacg cttccagact gctgtctgct tccggcagct
    35101 cgttggaggc cgccaccagc agacgcatcg ggattttttc tacgtgtgca ccgttgcgga
    35161 actggcgctc gttaatggcg gtgagcaagg tattaagaat tgccgggccc gctttccaga
    35221 tctcatccag aaagacaatt tctgcttccg gcaggtaacc gctggttaaa cgttcatagc
    35281 gcccttcatc ttttagcgcc tgaatagaaa ggggaccaaa aacttcttcc ggcgtggaga
    35341 agcgggtcat cagatattca aacgcgcggg cattctgaaa ggcgaatttt aagcgccggg
    35401 cgatcaaact tttggcaata cctggcgggc caaggaggaa cacactttca ccacttaatg
    35461 ccgctaataa acacaagcgg atggcgtggc tacgttcata aagccctttt ccaacgaact
    35521 gctcaggcgg gaaattcttt ccgctaataa atgagggtga gccataatga agtggcgtcc
    35581 tttcgtcaaa agttctgcgt aaattgcgag tatagacgtt tcttgctggt ggctaaaata
    35641 gtctcaaagg ggg
//
LOCUS       DADMHM010000017        35289 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.018, whole genome shotgun sequence.
ACCESSION   DADMHM010000017 DADMHM010000000
VERSION     DADMHM010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 35289)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35289)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35289
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.018"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..149
                     /locus_tag="JN125_000736"
     CDS             <1..149
                     /locus_tag="JN125_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2541 family protein"
                     /protein_id="HAY8870605.1"
                     /translation="SEIKEGQTTDWININSDNDNKRCVSKITFSGHTVNSSDMATLKI
                     IGDD"
     gene            175..888
                     /gene="msyB"
                     /locus_tag="JN125_000737"
     CDS             175..888
                     /gene="msyB"
                     /locus_tag="JN125_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acidic protein MsyB"
                     /protein_id="HAY8870606.1"
                     /translation="MNVNYLNDSDLDFLQHCSEEQLANFARLLTHNEKGKTRLSSVLM
                     RNELFKSMEGHPEQHRRNWQLIAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKL
                     KADKEMSTFEIEQQLLEQFLRKTWKKMDEEHKQEFLHAFDARVNELEELLPLLMKDKL
                     LAKGVSHLLSSQLTRILRTHAAMSVLGHGLLRGAGLGGPVGAALNGVKAVSGSAYRVT
                     IPAVLQIACLRRMVSATQV"
     gene            1037..1603
                     /gene="satP"
                     /locus_tag="JN125_000738"
     CDS             1037..1603
                     /gene="satP"
                     /locus_tag="JN125_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate uptake transporter"
                     /protein_id="HAY8870607.1"
                     /translation="MGNTKLANPAPLGLMGFGMTTILLNLHNVGYFALDGIILAMGIF
                     YSGIAQIFAGLLEYKKGNTFGLTAFTSYGSFWLTLVAILLMPKLGLTDAPNAQFLGVY
                     LGLWGVFTLFMFFGTLKGARVLQFVFFSLTVLFALLAIGNIAGNAAIIHFAGWIGLIC
                     GASAIYLAMGEVLNEQFGRTVLPIGESH"
     gene            complement(1638..2225)
                     /gene="mog"
                     /locus_tag="JN125_000739"
     CDS             complement(1638..2225)
                     /gene="mog"
                     /locus_tag="JN125_000739"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HAY8870608.1"
                     /translation="MNTLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELET
                     RLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATLAVADREMPGFGEQ
                     MRQISLHFVPTAILSRQVGVIRKQALILNLPGQPKSIKETLEGVKDAAGNVVVHGIFA
                     SVPYCIQLLEGPYVETAPEVVAAFRPKSARRDVSE"
     gene            complement(2340..3293)
                     /gene="tal"
                     /locus_tag="JN125_000740"
     CDS             complement(2340..3293)
                     /gene="tal"
                     /locus_tag="JN125_000740"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HAY8870609.1"
                     /translation="MTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQ
                     IPEYRKLIDDAVAWAKQQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLS
                     YDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFS
                     FAQARACAEAGVFLISPFVGRILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGY
                     ETVVMGASFRNIGEILELAGCDRLTIAPTLLKELAESEGAIERKLSYTGEVKARPARI
                     TESEFLWQHNQDPMAVDKLAEGIRKFAIDQEKLEKMIGDLL"
     gene            3572..5002
                     /locus_tag="JN125_000741"
     CDS             3572..5002
                     /locus_tag="JN125_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HAY8870610.1"
                     /translation="MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFG
                     KSLKNSIHPQPGGLTSFQSLCTSLAARVGSGNLAGVALAITAGGPRAVFWMWVAAFIG
                     MATSFAECSLAQLYKERDVNGQFRGGPAWYMARGLGMRWMGVLFAVFLLIAYGIIFSG
                     VQANAVARALSFSFDFPPLVTGIILAVFALLAITRGLHGVARLMQGFVPLMAIIWVLT
                     SMVICVINIGQLPHVIWSIFESAFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMG
                     STPNAAAAAASWPPHPAAQGIVQMIGIFIDTLVICTASAMLILLAGNDTTYMPLEGIQ
                     LIQKAMRVLMGSWGAEFVTLVVILFAFSSIVANYIYAENNLFFLRLNTPKAIWCLRIC
                     TFATVIGGTLLSLPLMWQLADIIMACMAITNLTAILLLSPVVHTIASDYLRQRKLGVR
                     PVFDPLRYPDIGRQLSPDAWDDVSQE"
     gene            5072..5848
                     /gene="yaaA"
                     /locus_tag="JN125_000742"
     CDS             5072..5848
                     /gene="yaaA"
                     /locus_tag="JN125_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HAY8870611.1"
                     /translation="MLILISPAKTLDYQSPLTTTRYTLPELLDNSQQLIHEARKLTPP
                     QISTLMRISDKLAGINAARFHDWQPDFTPANARQAILAFKGDVYTGLQAETFSEDDFD
                     FAQQHLRMLSGLYGVLRPLDLMQPYRLEMGIRLENARGKDLYQFWGDIITNKLNEALA
                     AQGDNVVINLASDEYFKSVKPKKLNAEIIKPVFLDEKNGKFKIISFYAKKARGLMSRF
                     IIENRLTKPEQLTGFNSEGYFFDEASSSNGELVFKRYEQR"
     gene            complement(6001..6297)
                     /locus_tag="JN125_000743"
     CDS             complement(6001..6297)
                     /locus_tag="JN125_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2502 domain-containing protein"
                     /protein_id="HAY8870612.1"
                     /translation="MKKMQSIVLALSLVLVAPMAAQAAEITLVPSVKLQIGDRDNRGY
                     YWDGGHWRDHGWWKQHYEWRGNRWHPHGPPPPPRHHKKAPHDHHGGHGPGKHHR"
     gene            complement(6511..7797)
                     /gene="thrC"
                     /locus_tag="JN125_000744"
     CDS             complement(6511..7797)
                     /gene="thrC"
                     /locus_tag="JN125_000744"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HAY8870613.1"
                     /translation="MKLYNLKDHNERVSFAQAVTQGLGKNQGLFFPHDLPEFSLTEID
                     EMLKLDFVTRSAKILSAFIGDEIPQEILEERVRAAFAFPAPVANVESDVGCLELFHGP
                     TLAFKDFGGRFMAQMLTHIAGDKPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRG
                     KISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKVALGLNSANSINISR
                     LLAQICYYFEAVAQLPQEARNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVN
                     DTVPRFLHDGQWSPKATQATLSNAMDVSQPNNWPRVEELFRRKIWQLKELGYAAVDDE
                     TTQQTMRELKELGYTSEPHAAVAYRALRDQLNPGEYGLFLGTAHPAKFKESVEAILGE
                     TLDLPKELAERADLPLLSHNLPADFAALRKLMMNHQ"
     gene            complement(7798..8730)
                     /gene="thrB"
                     /locus_tag="JN125_000745"
     CDS             complement(7798..8730)
                     /gene="thrB"
                     /locus_tag="JN125_000745"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HAY8870614.1"
                     /translation="MVKVYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVEAAETF
                     SLNNLGRFADKLPSEPRENIVYQCWERFCQELGKQIPVAMTLEKNMPIGSGLGSSACS
                     VVAALMAMNEHCGKPLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENDI
                     ISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQ
                     PELAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPDTA
                     QRVADWLGKNYLQNQEGFVHICRLDTAGARVLEN"
     gene            complement(8732..11194)
                     /gene="thrA"
                     /locus_tag="JN125_000746"
     CDS             complement(8732..11194)
                     /gene="thrA"
                     /locus_tag="JN125_000746"
                     /EC_number="1.1.1.3"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aspartate kinase/homoserine
                     dehydrogenase I"
                     /protein_id="HAY8870615.1"
                     /translation="MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKIT
                     NHLVAMIEKTISGQDALPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIK
                     HVLHGISLLGQCPDSINAALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHY
                     LESTVDIAESTRRIAASRIPADHMVLMAGFTSGNEKGELVVLGRNGSDYSAAVLAACL
                     RADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQF
                     QIPCLIKNTGNPQAPGTLIGASRDEDELPVKGISNLNNMAMFSVSGPGMKGMVGMAAR
                     VFAAMSRARISVVLITQSSSEYSISFCVPQSDCVRAERAMQEEFYLELKEGLLEPLAV
                     TERLAIISVVGDGMRTLRGISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATT
                     GVRVTHQMLFNTDQVIEVFVIGVGGVGGALLEQLKRQQSWLKNKHIDLRVCGVANSKA
                     LLTNVHGLNLENWQEELAQAKEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYAD
                     FLREGFHVVTPNKKANTSSMDYYHLLRHAAEKSRRKFLYDTNVGAGLPVIENLQNLLN
                     AGDELMKFSGILSGSLSYIFGKLDEGMSFSEATTLAREMGYTEPDPRDDLSGMDVARK
                     LLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMANLSQLDDLFAARVAKARDEG
                     KVLRYVGNIDEDGACRVKIAEVDGNDPLFKVKNGENALAFYSHYYQPLPLVLRGYGAG
                     NDVTAAGVFADLLRTLSWKLGV"
     gene            complement(11275..11340)
                     /gene="thrL"
                     /locus_tag="JN125_000747"
     CDS             complement(11275..11340)
                     /gene="thrL"
                     /locus_tag="JN125_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thr operon leader peptide"
                     /protein_id="HAY8870616.1"
                     /translation="MKRISTTITTTITITTGNGAG"
     gene            complement(11554..12240)
                     /locus_tag="JN125_000748"
     CDS             complement(11554..12240)
                     /locus_tag="JN125_000748"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710140.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA/rRNA methyltransferase"
                     /protein_id="HAY8870617.1"
                     /translation="MRITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPAT
                     RWVAHGSGDIIDNIKVFPTLVESLHDVDFTVATTARSRAKYHYYATPVELVLLLEEKS
                     SWMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQ
                     QPTKSDTTADQHQLQALRERVMALLTTLAVADDIKLVDWLQQRLGLLEQRDTAMLHRL
                     LHDIEKNITK"
     gene            complement(12640..12780)
                     /locus_tag="JN125_000749"
     CDS             complement(12640..12780)
                     /locus_tag="JN125_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870618.1"
                     /translation="MTKVRNCVLDALSINVNNIISLVVGTFPQDPTVSKTAVILTILT
                     AT"
     gene            12876..13592
                     /gene="arcA"
                     /locus_tag="JN125_000750"
     CDS             12876..13592
                     /gene="arcA"
                     /locus_tag="JN125_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003856501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator ArcA"
                     /protein_id="HAY8870619.1"
                     /translation="MQTPHILIVEDELVTRNALKSIFEAEGYDVFEATDGAEMHQILS
                     EYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYIT
                     KPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLISPDGEQYK
                     LPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDT
                     PEIIATIHGEGYRFCGDLED"
     gene            complement(13652..15004)
                     /gene="creD"
                     /locus_tag="JN125_000751"
     CDS             complement(13652..15004)
                     /gene="creD"
                     /locus_tag="JN125_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein CreD"
                     /protein_id="HAY8870620.1"
                     /translation="MLKSPLFWKMTTLFGAVLLLLIPIMLIRQVIVERADYRSDVEDA
                     IRQSTSGPQKLVRPLIAIPVTELYTVQEEDKTVERKRSFIHFWLPESLMVDGNQNVEE
                     RKIGIYTGQVWHSDLTLKADFDVSRLSELNAPNIILGKPFIVISVGDARGIGVVKAPE
                     VNGTALTIEPGTGLEQGGQGVHIPLPEGDWRKQNLQLNMALNLSGTGDLSVVPAGRNS
                     EMTLTSNWPHPSFLGDFLPAKREVSESGFQAQWQSSWFANNLGERFASGNDTGWENFP
                     AFSVAVTTPADQYQLTDRATKYAILLIALTFMAFFVFETLTAQRLHPMQYLLVGLSLV
                     MFYLLLLALSEHIGFTVAWIIASLIGALMNGIYLQAVLKGWRNSMLFTLALLLLDGVM
                     WGLLNSADSALLLGTSVLVVALAGMMFVTRNIDWYAFSLPKMKASKEVTMDDQLRIWK
                     "
     gene            complement(15062..16486)
                     /gene="creC"
                     /locus_tag="JN125_000752"
     CDS             complement(15062..16486)
                     /gene="creC"
                     /locus_tag="JN125_000752"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     CreC"
                     /protein_id="HAY8870621.1"
                     /translation="MRIGMRLLLGYFLLVAVAAWFVLAIFVKEVKPGVRRATEGTLID
                     TATLLAELARPDLLSGDPTHGQLAQAFNQLQHRPFRANIGGINKVRNEYHVYMTDSQG
                     KVLFDSANKAVGQDYSRWNDVWLTLRGQYGARSTLQNPADPESSVMYVAAPIMDGSRL
                     IGVLSVGKPNAAMAPVIKRSERRILWASAILLGIALVIGAGMVWWINRSIARLTRYAD
                     SVTDNKPVPLPELGSSELRKLAQALESMRVKLEGKNYIEQYVYALTHELKSPLAAIRG
                     AAEILREGPPPEVVARFTDNILTQNARMQALVETLLRQARLENRQEVVLTVVDVAALF
                     RRVSEARTVQLAEKNITLHVMPTEVNVAAEPALLEQALGNLLDNAIDFTPESGRITLS
                     AEVDQEHVALKVLDTGSGIPDYALSRIFERFYSLPRANGQKSSGLGLAFVSEVARLFN
                     GEVTLRNVQEGGVLASLRLHRHFT"
     gene            complement(16486..17175)
                     /gene="creB"
                     /locus_tag="JN125_000753"
     CDS             complement(16486..17175)
                     /gene="creB"
                     /locus_tag="JN125_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator CreB"
                     /protein_id="HAY8870622.1"
                     /translation="MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKAR
                     QLVPDVMILDVGLPDISGFELCSQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYV
                     AKPFSPREVCARVRTLLRRVKKFSSPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEF
                     LLLKTLLKSPGRVWSRQQLMDSVWEDAQDTYDRTVDTHIKTLHAKLRAINPDLSPINT
                     HRGMGYSLRGL"
     gene            complement(17188..17661)
                     /gene="creA"
                     /locus_tag="JN125_000754"
     CDS             complement(17188..17661)
                     /gene="creA"
                     /locus_tag="JN125_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein CreA"
                     /protein_id="HAY8870623.1"
                     /translation="MKYKHLILSLSLIMLGPLAHAEEIGSVDTVFKMIGPDHKIVVEA
                     FDDPDVKNVTCYVSRAKTGGIKGGLGLAEDTSDAAISCQQVGPIELSDRIKNGKAQGE
                     VVFKKRTSLVFKSLQVVRFYDAKRNALAYLAYSDKVVEGSPKNAISAVPVMPWRQ"
     gene            17872..18741
                     /gene="robA"
                     /locus_tag="JN125_000755"
     CDS             17872..18741
                     /gene="robA"
                     /locus_tag="JN125_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MDR efflux pump AcrAB transcriptional activator
                     RobA"
                     /protein_id="HAY8870624.1"
                     /translation="MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKD
                     VTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPAL
                     YRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMR
                     YQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVM
                     LQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRP
                     INLRCELLIPIRR"
     gene            complement(18738..19385)
                     /gene="gpmB"
                     /locus_tag="JN125_000756"
     CDS             complement(18738..19385)
                     /gene="gpmB"
                     /locus_tag="JN125_000756"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase GpmB"
                     /protein_id="HAY8870625.1"
                     /translation="MLQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATRAK
                     ELGITHIISSDLGRTRRTAEIIAQACGCDIIFDSRLRELNMGVLEKRHIDSLTEEEEN
                     WRRQLVNGTVDGRIPEGESMQELSDRVNAALESCRDLPQGSRPLLVSHGIALGCLVST
                     ILGLPAWAARRLRLRNCSISRVDYQESLWLASGWVVETAGDISHLDAPALDELQR"
     gene            19437..19958
                     /gene="yjjX"
                     /locus_tag="JN125_000757"
     CDS             19437..19958
                     /gene="yjjX"
                     /locus_tag="JN125_000757"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001649724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-canonical purine NTP phosphatase"
                     /protein_id="HAY8870626.1"
                     /translation="MHQVVCATTNPAKIQAILQAFHEIFGEESCHIASVAVESGVPEQ
                     PFGSEETRAGARNRVANARRLLPEADFWVAIEAGIDGDSTFSWVVIENTSQRGEARSA
                     TLPLPAVILQKVREGEALGPVMSRYTGIDEIGRKEGAIGVFTAGKLTRASVYHQAVIL
                     ALSPFHNAVYQAL"
     gene            complement(20043..20369)
                     /gene="trpR"
                     /locus_tag="JN125_000758"
     CDS             complement(20043..20369)
                     /gene="trpR"
                     /locus_tag="JN125_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trp operon repressor"
                     /protein_id="HAY8870627.1"
                     /translation="MAQQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLT
                     PDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEE
                     VLLKSD"
     gene            complement(20459..22396)
                     /gene="sltY"
                     /locus_tag="JN125_000759"
     CDS             complement(20459..22396)
                     /gene="sltY"
                     /locus_tag="JN125_000759"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase"
                     /protein_id="HAY8870628.1"
                     /translation="MEKAKQVTWRLLAAGVCLLTVSSVARADSLDEQRSRYAQIKQAW
                     DNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQ
                     SRFVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK
                     SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAI
                     ISLANNPNTVLTFARTTGATDFTRQIAAVAFASVARQDAENARLMIPSLAQAQQLNED
                     QIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTW
                     LARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYE
                     LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYA
                     FNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAMAIARQESAW
                     NPKVKSPVGASGLMQIMPGTATHTVKMFSIPGYSSPGQLLDPETNINIGTSYLQYVYQ
                     QFGNNRIFSSAAYNAGPGRVRTWLGNSAGRIDAVAFVESIPFSETRGYVKNVLAYDAY
                     YRYFMGDKPTLMSATEWGRRY"
     gene            22607..24274
                     /gene="ettA"
                     /locus_tag="JN125_000760"
     CDS             22607..24274
                     /gene="ettA"
                     /locus_tag="JN125_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-dependent translational throttle protein
                     EttA"
                     /protein_id="HAY8870629.1"
                     /translation="MAQFVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAG
                     KSTLLRIMAGIDKDIEGEARPQPDIKIGYLPQEAQLNPEHTVRESIEEAVSEVVNALK
                     RLDEVYALYADPDADFDKLAAEQGRLEEIIQAHDGHNLNVQLERAADALRLPDWDAKI
                     ANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDFEGTVVAITHD
                     RYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQRLAQEASQEAARRKSIEKELEWV
                     RQGTKGRQSKGKARLARFEELNSTEYQKRNETNELFIPPGPRLGDKVLEVSNLRKSYG
                     DRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITLGETVKLASVD
                     QFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGER
                     GRLHLAKLLQVGGNMLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDRIA
                     THILDYQDEGKVEFFEGNFTEYEEYKKRTLGADALEPKRIKYKRIAK"
     gene            complement(24581..25813)
                     /locus_tag="JN125_000761"
     CDS             complement(24581..25813)
                     /locus_tag="JN125_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418807.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trifunctional nicotinamide-nucleotide
                     adenylyltransferase/ribosylnicotinamide
                     kinase/transcriptional regulator NadR"
                     /protein_id="HAY8870630.1"
                     /translation="MSSFDYLKTAIKQQGCTLQQVADASGMTKGYLSQLLNAKIKSPS
                     AQKLEALHRFLGLEFPRQKKTIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIMGFDD
                     TRDRALFEDSAMSQQPTVPDRLRWLLQTFKYQKNIRIHAFNEEGMEPYPHGWDVWSNG
                     IKKFMAEKGIQPDLIYTSEEADAPQYMEHLGIDTVLVDPKRTFMSISGAQIRENPFRY
                     WEYIPTEVKPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDE
                     IALQYSDYDKIALGHAQYIDFAVKYANKVAFIDTDFVTTQAFCKKYEGREHPFVQALI
                     DEYRFDLVILLENNTPWVADGLRSLGSSVDRKEFQNLLVEMLEENNIEFVRVEEDDYD
                     SRFLRCVELVREMMGEQR"
     gene            complement(25834..27216)
                     /gene="radA"
                     /locus_tag="JN125_000762"
     CDS             complement(25834..27216)
                     /gene="radA"
                     /locus_tag="JN125_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001399683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HAY8870631.1"
                     /translation="MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPT
                     VARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGG
                     NPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIE
                     QICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV
                     GHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQG
                     LREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLE
                     QNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQ
                     DLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKL
                     SDALSVFDDL"
     gene            complement(27265..28233)
                     /gene="serB"
                     /locus_tag="JN125_000763"
     CDS             complement(27265..28233)
                     /gene="serB"
                     /locus_tag="JN125_000763"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase"
                     /protein_id="HAY8870632.1"
                     /translation="MPNITWCDLPEDVSLWPGLPLSLSGDEVMPLDYHAGRSGWLLYG
                     RGLDKQRLTQYQSKLGAAMVIVAAWCVEDYQVIRLAGSLTARATRLAHEAQLDVAPLG
                     KIPHLRTPGLLVMDMDSTAIQIECIDEIAKLAGTGEMVAEVTERAMRGELDFTASLRS
                     RVATLKGADANILQQVRENLPLMPGLTQLVLKLETLGWKVAIASGGFTFFAEYLRDKL
                     RLTAVVANELEIMDGKFTGNVIGDIVDAQYKAKTLTRLAQEYEIPLAQTVAIGDGAND
                     LPMIKAAGLGIAYHAKPKVNEKAEVTIRHADLMGVFCILSGSLNQK"
     gene            28339..28983
                     /locus_tag="JN125_000764"
     CDS             28339..28983
                     /locus_tag="JN125_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtjB family periplasmic protein"
                     /protein_id="HAY8870633.1"
                     /translation="MARTKLKFRLHRAVIVLFCLALLVALMQGASWFSQNHQRQRNPQ
                     LEELARTLARQVTLNVAPLMRTDSPDEKRIQAILDQLTDESRILDAGVYDEQGDLIAR
                     SGESVEVRDRLALDGKKAGGYFNQQIVEPIAGKNGPLGYLRLTLDTHTLATEAQQVDN
                     TTNILRLMLLLSLAIGVVLTRTLLQGKRTHWQQSPFLLTASKPVPEEEESEKKE"
     gene            29011..30027
                     /gene="lplA"
                     /locus_tag="JN125_000765"
     CDS             29011..30027
                     /gene="lplA"
                     /locus_tag="JN125_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate--protein ligase LplA"
                     /protein_id="HAY8870634.1"
                     /translation="MSTLRLLISDSYDPWFNLAVEECIFRQMPATQRVLFLWRNADTV
                     VIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTIST
                     SIVLNALNALGVSAEASGRNDLVVKTAEGDRKVSGSAYRETKDRGFHHGTLLLNADLS
                     RLANYLNPDKKKLAAKGITSVRSRVTNLTELLPGITHEQVCEAITKAFFAHYGERVEA
                     EIISPDKTPDLPNFAEIFARQSSWEWNFGQAPAFSHLLDERFSWGGVELHFDVEKGHI
                     TRAQVFTDSLNPAPLEALAGRLQGCLYRADMLQQECEALLVDFPDQEKELRELSTWIA
                     GAVR"
     gene            complement(30483..31202)
                     /gene="deoD"
                     /locus_tag="JN125_000766"
     CDS             complement(30483..31202)
                     /gene="deoD"
                     /locus_tag="JN125_000766"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HAY8870635.1"
                     /translation="MATPHINAEMGDFADVVLMPGDPLRAKYIAETFLEDAREVNNVR
                     GMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVLPHVKLR
                     DVVIGMGACTDSKVNRIRFKDHDFAAIADFDMVRNAVDAAKALGIDARVGNLFSADLF
                     YSPDGEMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAER
                     QTTFNDMIKIALESVLLGDKE"
     gene            complement(31282..32505)
                     /gene="deoB"
                     /locus_tag="JN125_000767"
     CDS             complement(31282..32505)
                     /gene="deoB"
                     /locus_tag="JN125_000767"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HAY8870636.1"
                     /translation="MKRAFIMVLDSFGIGATEDAERFGDVGADTLGHIAEACAKGEAD
                     NGRKGPLNLPNLTRLGLAKAHEGSTGFIPAGMDGNAEVIGAYAWAHEMSSGKDTPSGH
                     WEIAGVPVLFEWGYFSDHENSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEH
                     MKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTNGGYNIGRVIARPFIG
                     DKAGNFQRTGNRHDLAVEPPAPTVLQKLVDEKHGQVVSVGKIADIYANCGITKKVKAT
                     GLDALFDATIKEMKEAGDNTIVFTNFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMS
                     LLRDDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTLA
                     KYFGTSDMEYGKAMF"
     gene            complement(32557..33879)
                     /gene="deoA"
                     /locus_tag="JN125_000768"
     CDS             complement(32557..33879)
                     /gene="deoA"
                     /locus_tag="JN125_000768"
                     /EC_number="2.4.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313368.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine phosphorylase"
                     /protein_id="HAY8870637.1"
                     /translation="MFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAM
                     TIFFHDMTMPERVSLTMAMRDSGTVLDWKSLHLNGPIVDKHSTGGVGDVTSLMLGPMV
                     AACGGYIPMISGRGLGHTGGTLDKLESIPGFDIFPDDNRFREIIKDVGVAIIGQTSSL
                     APADKRFYATRDITATVDSIPLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSE
                     ALAEAIVGVANGAGVRTTALLTDMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVT
                     MALCVEMLISGKLAKDDAEARAKLQAVLDNGKAAEVFGRMVAAQKGPTDFVENYAKYL
                     PTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQ
                     VDGQRPLAVIHAKDENSWQEAAKAVKAAIKLADKAPESTPTVYRRISE"
     gene            complement(34006..34785)
                     /gene="deoC"
                     /locus_tag="JN125_000769"
     CDS             complement(34006..34785)
                     /gene="deoC"
                     /locus_tag="JN125_000769"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005097947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HAY8870638.1"
                     /translation="MTDLKASSLRALKLMDLTTLNDDDTDEKVIALCHQTKTPVGNTA
                     AICIYPRFIPIARKTLKEQGTPEIRIATVTNFPHGNDDIEIALAETRAAIAYGADEVD
                     VVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIK
                     AGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAI
                     ADELFGADWADARHYRFGASSLLASLLKALGHGDGKSASSY"
     gene            35043..>35289
                     /locus_tag="JN125_000770"
     CDS             35043..>35289
                     /locus_tag="JN125_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3029 family protein"
                     /protein_id="HAY8870639.1"
                     /translation="MPTSHENALQQRCQQIVTSPVLSPEQKRHFLALEAENNLPYPQL
                     PAEARRALDEGVICDMFEGHAPYKPRYVLPDYARFLAN"
BASE COUNT         8367 a         9604 c         8838 g         8480 t
ORIGIN      
        1 cttcagaaat aaaagaaggg caaaccactg actggatcaa cattaacagt gataacgaca
       61 ataaacgctg cgtctcaaaa atcacctttt ccggtcatac ggtgaactca tcggatatgg
      121 ccacgctgaa aattatcggc gacgactaac gccagaatat agaagccaca aaaaatgaat
      181 gttaattacc tgaatgattc agatctggat tttcttcagc attgtagtga ggaacagttg
      241 gcaaatttcg cccgattgct cacccataat gaaaaaggca aaactcgcct ctccagcgta
      301 ctgatgcgca acgaactgtt taaatcgatg gaggggcatc ccgagcaaca tcgccgcaac
      361 tggcagctga ttgctggaga attacagcat tttggtggcg atagtatcgc caacaaactg
      421 cgcggacacg gtaaattgta tcgggccatt ttgctcgatg tttcaaaacg attgaagctg
      481 aaagccgaca aagagatgtc tacgtttgaa attgagcaac agttactgga acaatttctg
      541 cgtaaaacct ggaagaaaat ggacgaggaa cataagcagg agtttctgca cgcgttcgat
      601 gcgagggtga atgagctgga agagctgctg ccgctgctga tgaaagacaa attattggca
      661 aaaggcgtgt cgcatttgct ttccagccaa ctgacccgca ttttacgcac ccacgcagca
      721 atgagcgtac ttgggcatgg tttgctgcgc ggcgcggggc tgggaggccc tgtaggtgcg
      781 gcactaaatg gggttaaagc ggtcagcggc agcgcctatc gcgtgacgat tccagccgta
      841 ctgcaaatcg cctgcctgcg ccggatggtt agcgccactc aggtctgata ccggaaaccg
      901 gggaaaattt tcattttccc ctcaaaagat cgtagacact gccccactgg ctgattatta
      961 tgccgcgccc tgaaaacact acagttattc agggaaatta tttcaccatt cattcgatga
     1021 tgatttttga ggaattatgg gcaacactaa gttggctaat ccggcaccgc tgggcctgat
     1081 gggcttcggc atgaccacca ttctgcttaa cctgcacaac gtgggttatt tcgctctgga
     1141 cggtattatt cttgccatgg gcattttcta cagcggcatc gcgcaaattt ttgctggtct
     1201 gctggagtac aaaaaaggca acactttcgg tttaaccgca ttcacctctt acggttcttt
     1261 ctggctgacg ctggttgcga ttctgctgat gccgaaactg ggtctgaccg atgcgccaaa
     1321 tgcacagttc cttggtgtct acctgggtct gtggggcgta tttacgctgt ttatgttctt
     1381 cggcacgctg aaaggagcac gcgttctgca attcgttttc tttagcctga ctgtgctgtt
     1441 tgccctgctg gcgatcggta acattgccgg taacgccgca atcatccact ttgccggctg
     1501 gattggtctg atctgtggtg ccagtgcaat ctatctggcg atgggtgaag tactgaacga
     1561 gcagtttggt cgcaccgttc tgccgattgg tgaatcccac taattgtttt gagatccccc
     1621 cgctcggggg gattttttta ttcgctaacg tcgcgtcttg cactcttcgg tctgaatgca
     1681 gcaaccactt ctggtgccgt ttcaacgtat ggcccttcca gcaactgaat gcagtacggt
     1741 acgctggcaa aaataccgtg taccacaacg ttacccgcag cgtccttcac accttccagc
     1801 gtctctttaa tagacttcgg ctgaccgggt aagttaagga tcagcgcctg tttgcgaatc
     1861 acaccaacct gacgcgaaag gatcgcagtt ggtacaaaat gcaggcttat ctggcgcatc
     1921 tgttcaccaa agccaggcat ctcgcggtcc gctactgcca gcgtcgcatc gggcgttacg
     1981 tcacgacgcg ccgggccagt tccgcccgtg gtgagcacca gatggcaact catttcatcc
     2041 actagctcac acaacgtttg ctcgatgatc gcctgctcat cggggattaa gcgggtttcc
     2101 agttcaaacg gcgtggttag cgccgatgtc agccattctt ccagcgcagg gatgccttta
     2161 tcctgataaa cgccgctgga tgcgcgatca gagatggaaa ctaagccaat acgtaaagta
     2221 ttcatcaaga tttttccgtt taaacagtct cgttaaacag aatgatacac tgcgaaggga
     2281 gtgacagaca ggcttcagaa gaggtagcgt gaccgacttc ccggtcacgc taagaatgat
     2341 tacagcagat cgccgatcat tttttccagt ttttcctggt caatagcaaa cttacggata
     2401 ccttccgcca gtttatctac tgccattgga tcctggttgt gctgccacag gaactcggac
     2461 tcagtgatac gcgccggacg cgctttcact tcgccggtgt aagacagttt acgttcgata
     2521 gccccttcgc tctcagccag ctctttcagc agtgtaggtg cgatggtaag acggtcgcag
     2581 cctgccagtt ccagaatttc gccgatgtta cggaagcttg cgcccataac cacggtttca
     2641 taaccgtgct ctttgtagta ctggtagatt tcagatacag aaaccacgcc cggatcttct
     2701 gccggagcgt actctttctt atcagtattc gctttgtacc agtcaagaat acggccaaca
     2761 aatggcgaga tcaggaacac gcctgcttcc gcacaagcac gagcctgagc gaaggagaac
     2821 agcagggtca ggttacagtt gatgccttct ttttccagct gttctgcagc acggataccc
     2881 tgccaggtag aagccagttt gatcagaata cgatcgttgc taataccagc atcgttgtag
     2941 agtttgatca ggcgttttgc tttcgcaatt gacgcttcgg tgtcatagga aagacgcgca
     3001 tcaacttcag ttgagatacg acccggaacc agtttcagga tttccagacc aatatttact
     3061 gccagtttgt cggtcgcgtc cacgatctgc tgcgcgcgat cgttgctctg ctgtttcgcc
     3121 caggcgacag catcatcaat caacttacgg tattccggaa tctgcgctgc gttaagaatg
     3181 agagaagggt tggttgtggc atcctgcggt tgatacagct tcattgccgc gatgtcccca
     3241 gtgtcggcca ctacggtggt gtactgacga agggaggtca atttgtccgt catgatagta
     3301 tttctcttta aacagcttgt tagggggatg taaccggtct gccctgatga tatcacgacg
     3361 caacgtcagc gcaaccgccg acaagacggt tatcgccagg cgagactgtt tcggatttct
     3421 gacactgcgt tgatatcgcc cgccattttt atacaaaacc tcatgtatgc tacgcagaag
     3481 ttatcaagta cctcgtagcg tatatacttc ttaaacaatt ggtaacgttt acacaggaaa
     3541 gtcatcgcga ccggcaataa gagggatatg catgccagat tttttctcct ttattaacag
     3601 cgtcctttgg ggatcggtaa tgatttacct gctcttcggc gcaggttgtt ggttcacttt
     3661 tcgcaccgga tttgtgcagt ttcgctacat ccgccagttt ggcaaaagtc ttaaaaatag
     3721 cattcatcca cagccaggcg gtttaacctc atttcagtca ttgtgtacca gtcttgcggc
     3781 gcgcgtgggt agcggcaacc tggccggcgt tgcgctggct attaccgccg gtggacctag
     3841 agccgtcttt tggatgtggg ttgccgcgtt tatcggcatg gcgacctcgt ttgccgaatg
     3901 ttcccttgca caactttata aagaacgtga cgtcaatggg cagtttcgtg gcggaccggc
     3961 atggtatatg gcgcgcgggc tggggatgcg ttggatgggc gttctgttcg ccgtcttttt
     4021 gctcatcgcc tacggcataa ttttcagcgg agttcaggcg aacgccgttg cccgagccct
     4081 gagtttttct tttgattttc ccccgctggt gacaggcatt attctcgctg tctttgctct
     4141 gctggcaatc actcgcggtc ttcatggcgt cgcccggctc atgcaggggt ttgtcccgtt
     4201 gatggcgata atctgggtgc tgaccagcat ggtgatttgc gtaataaata tcgggcaact
     4261 tccccacgtc atttggtcta tttttgagag tgcttttggc tggcaggaag cggcaggcgg
     4321 cgcggcggga tataccttaa gccaggcgat tactaacggt tttcagcgca gtatgttttc
     4381 caatgaggcg ggaatgggtt cgacgccaaa cgcggcagcg gcagcggcgt cctggcctcc
     4441 gcatccggca gcgcaaggga ttgtccagat gattggcatt tttatcgaca ccctggtcat
     4501 ctgtacggca agcgccatgc tgatattact ggcgggtaac gacacaacct acatgccgct
     4561 ggaaggtatt cagcttatcc agaaggcgat gcgggtgcta atgggttcct ggggtgctga
     4621 gtttgttacc ctcgtggtta ttctgtttgc cttcagctcc atcgttgcca actacattta
     4681 tgccgaaaac aatctcttct ttttacgcct gaacacccct aaagcgatct ggtgtttgcg
     4741 gatctgcacc ttcgcaacgg tcatcggcgg caccttgcta agccttccgc tgatgtggca
     4801 actggcagat atcataatgg cctgcatggc tattaccaat ttgaccgcca ttttactgct
     4861 ctcgcctgtg gttcatacca ttgccagtga ttatctacgc cagcgtaaac tcggcgtgcg
     4921 cccggtgttt gatccgttgc gttatccgga tatcggtcgc cagctttctc cggacgcgtg
     4981 ggatgatgtt tcgcaggagt aatcacaact atcgatcaac tcattctctt tttttgctaa
     5041 agtcggcata aatttcctgc aaggactgga tatgctgatt cttatttcac ctgcgaaaac
     5101 gcttgattac caaagcccgt tgaccaccac gcgctatacg ctgccggagc tgttagacaa
     5161 ttcccagcag ttgatccatg aagcgcggaa actgacgcct ccgcagatta gcacgctgat
     5221 gcgcatcagc gacaaactgg cgggtatcaa cgccgctcgc tttcatgact ggcagccaga
     5281 tttcacgccg gcgaatgccc gccaggcgat tctggcgttt aaaggtgatg tctacaccgg
     5341 cttgcaggcc gaaaccttca gcgaagacga tttcgatttt gcccaacagc atttgcgaat
     5401 gctttccggc ttgtatggcg tactgcgccc gctcgattta atgcagcctt atcgtctgga
     5461 aatggggatc cgtcttgaga atgcccgagg gaaagatctg tatcaattct ggggagatat
     5521 catcaccaac aagctgaacg aggcgctcgc agcacaaggc gataatgtgg tgattaatct
     5581 ggcgtcagat gagtatttta aatcggtgaa gccgaagaaa ttgaatgccg agattatcaa
     5641 gccggtgttc ctcgatgaga agaacggcaa atttaagatc atcagcttct acgctaagaa
     5701 agcacgcggt ctgatgagtc gtttcattat tgaaaatcgg ctgaccaaac cagagcaact
     5761 gactggtttt aatagcgaag gttacttctt tgatgaagct tcctccagca atggcgaact
     5821 ggtgtttaaa cgctacgagc agcgttaagt ttgcagtcaa tgccggatgc ggcgtgaacg
     5881 ccttatccgg cctacaaaag catgcagatt caatatattg cagaattcac gtaggcctga
     5941 taagacgcgc cagcgtcgca tcaggcgctg aatgccggat tgttacccgg catttgtcat
     6001 ttagcggtga tgtttgcctg gaccatgacc gccgtgatga tcatgaggag ctttcttatg
     6061 gtggcgcggc ggtggcggcg gtccgtgtgg gtgccagcga ttgcctcgcc attcataatg
     6121 ttgtttccac cagccgtggt cgcgccagtg acctccatcc cagtaatagc cacgattatc
     6181 acgatcgcct atttgtaatt ttactgacgg gactaacgta atttccgcag cctgtgctgc
     6241 catgggagcg accagaacta gggaaagtgc gagtacgata gattgcatct ttttcacagg
     6301 ttactccttt tatcattgcc cgttatgggt cgatatccgg agattatgcg atgagaacga
     6361 cggttgttat tctccgcaat cctaatctct aagttaccgc atttattgag aatttctcct
     6421 ttttccctgt cgtttttctc cataatttcg tcataaaaaa gccgggctgc ataaaagcaa
     6481 acccggcctg attgagataa tgaatagatt ttactgatga ttcatcatca atttacgcaa
     6541 cgcagcaaaa tcggcgggca gattatgtga aagcaagggt aaatcagcac gttctgccag
     6601 ctcttttggc agatccaacg tttcaccgag aatcgcttcc acgctctctt taaatttcgc
     6661 cggatgcgcg gtgccgagga acaagccata ttcgcctgga ttcaactggt cacgcagcgc
     6721 acgatacgct acggcagcgt gcggctccga ggtgtagccc agttctttta actcacgcat
     6781 tgtctgttgc gtggtttcat catccacggc tgcataaccc agctctttca gttgccagat
     6841 tttgcggcgg aacaactctt ccacacgcgg ccagttgttc ggctgactca cgtccatcgc
     6901 gttggataac gtcgcctgag tcgctttggg tgaccactga ccgtcgtgca ggaaacgtgg
     6961 cacggtatcg ttcacgttgg tcgcagcaat aaaacgtttc accggcagac cgagtgactt
     7021 cgccagcaga cccgccgtca aatcgccgaa gtttccgctt ggcaccgaga caaccagctg
     7081 gttgcgcgct tcctgcggca gctgcgcaac tgcttcaaag tagtagcaaa tctgcgccag
     7141 caaacggctg atgttaatcg agttagctga gtttaacccc agcgccactt tcagctcttc
     7201 atcatcaaac gcctgcttca ccagcgcctg acaggcatcg aaatcgccgt cgatggcaac
     7261 agtttcgata ttgccgccca atgtacagaa cagtttttct tgcagtggac tgattttgcc
     7321 tcgtggatag aggataacca ctttcacatt cggtaaaccg tagaaagcat gagccactgc
     7381 cgctccggta tcaccggagg tcgcggtcag aatggtcact ggcttatcgc ccgcaatatg
     7441 ggtcagcatt tgtgccataa agcgaccgcc gaaatcttta aatgccagcg ttggcccgtg
     7501 gaacaattcc agacaaccga catcgctttc aacattggcg accggagccg ggaaggcaaa
     7561 cgccgcgcgc acgcgctctt ccaggatttc ctgcgggatt tcatcaccaa taaacgccga
     7621 gaggatcttc gcactgcggg tgacaaaatc cagcttcagc atctcatcaa tttcagtcag
     7681 gctgaattcc ggcaggtcgt gcggaaaaaa cagcccctga tttttgccca acccctgggt
     7741 tacggcttgc gcaaagctga cccgctcatt gtgatctttc agattgtaga gtttcattta
     7801 gttttccagt actcgtgcgc ccgccgtatc cagccggcaa atatgaacaa aaccttcctg
     7861 attttgcagg tagttcttac ccaaccagtc ggcaacgcgc tgggcggtat ccggcttgtc
     7921 acacagagcg aacaaggtcg ggccggagcc ggagataccg ctcgctaccg cgccgatttc
     7981 cgcaaccgcc tgccgcgcct gccggaagcc aggcagtaac cgttcacggt agggttcagc
     8041 gataacatct ttcatcagct tcgcggcaag ctcaggctga cgggaatagc aggcgtgaat
     8101 gaagccagcc agatgtcgcc cgtgcgcaat gcaatcctgg cggcgatact gcgccggtaa
     8161 aatagccctg gcttctgccg ttgagacttt aatccccgga tacgccagca cccacagcca
     8221 ctcatcaaac cctggcactt gctggctgat aatgtcgttt tcttcgatca tcaactgcat
     8281 accaccaaga aaacacggtg ccacgttgtc gtaatgaatg ctgccggaga ttcgtccttc
     8341 cagctcgccc atcaaagcca gcaaacgagt gtcattaagc ggcttgccac agtgttcatt
     8401 catcgccatc agcgccgcga ccaccgaaca ggcgctggag cctaagcccg aaccgattgg
     8461 catattcttt tccagagtca tcgccactgg aatttgcttg ccaagctcct ggcaaaaacg
     8521 ctcccagcac tgataaacga tattttcccg tggttctgac ggcagcttat cggcaaagcg
     8581 tccgaggttg ttgagactga atgtctctgc cgcctcaacc gtgactacat ctccgagcaa
     8641 tgcaccatca acaggtgtca ccgccgcccc gagcacatca aacccgacgc tcatattggc
     8701 actggaagcc ggggcataaa ctttaaccat gtcagactcc taacttccat gagagggtac
     8761 gtagcagatc ggcaaagaca ccggcagctg taacgtcatt gcccgcacca tatccgcgca
     8821 gcaccaacgg cagcggctga taatagtggc tataaaaggc cagggcgttt tcgccatttt
     8881 tcactttgaa cagcggatca ttaccatcca cttcggcaat cttcacgcgg caggcaccat
     8941 cttcatcaat attgccaaca tagcgcaaaa cttttccttc atcacgggcc ttcgccacgc
     9001 gcgcggcaaa gagatcgtcg agctgtgaca gattcgccat aaaagcggca acatcaccct
     9061 cagcgttaaa ctctgcgggc agcacaggtt caatttcaat atccgccagc tccagttcac
     9121 gtcccgtttc acgagcgaga atcaatagct tacgcgctac atccatacca gaaagatcat
     9181 ctcgcggatc cggttcggta taacccattt cccgcgccag agtagtcgcc tcggagaaac
     9241 tcatgccttc gtctaacttg ccgaagatat aagaaagcga acctgaaaga atgccggaga
     9301 acttcatcaa ttcatcacca gcattgagca gattttgcag gttctcaata accggtaatc
     9361 cagccccaac gttggtgtca tagaggaatt tacgccgcga tttttccgcc gcatgacgca
     9421 acagatggta gtaatccatc gacgaggtgt tggccttttt gttcggcgtg acaacgtgga
     9481 aaccttcgcg caagaagtcg gcatattgat ccgccactgc ctggctggag gtgcagtcaa
     9541 caatgaccgg gttcagcaga tgatattctt tcacgaggcg aattaagcgc ccgagattaa
     9601 acggctcttt ggcttgcgcc agttcttcct gccagttttc cagatttagg ccatgcacat
     9661 tggtgagcag tgccttcgag ttggcaacac cgcagacacg taagtcgata tgtttattct
     9721 tcagccagct ttgttgacgc ttcagttgct ccagcagcgc accgccaacg ccaccgacgc
     9781 caatcacaaa cacttcgata acctgatcgg tattgaacag catctgatga gtaacgcgca
     9841 cgccagtggt cgcatcatcg ttatttacca cgacagagat tgagcgttca gaagatccct
     9901 gagcaatggc gacaatgttg atattggcgc gggccagcgc ggcaaagaat ttcgccgaga
     9961 tcccacgcaa ggtgcgcata ccatcaccta ccaccgagat aatggccagc cgttccgtca
    10021 ccgccagcgg ctccagtaag ccttctttca gttccaggta gaactcttcc tgcattgccc
    10081 gttcagctcg cacacagtcg ctttgtggaa cgcagaaact gatactgtat tcggaagatg
    10141 attgcgtaat cagcaccacg gaaatacggg cgcgtgacat tgcagcaaag acgcgcgccg
    10201 ccatgccgac cattcctttc atccccggac cagaaacgct gaacattgcc atattattca
    10261 gattggaaat gcctttgacc ggtaattcgt cttcatcacg gctggcacca atgagcgtac
    10321 ctggtgcttg aggatttccg gtatttttaa tcaggcaagg gatctggaac tgggcgatgg
    10381 gggtaatggt gcgggggtga agaactttag cgccgaagta ggaaagctcc atcgcttcct
    10441 ggtaggacat cgacttcaac aacctcgcat cgggcacctg acgcgggtcg caggtataga
    10501 ccccgtcaac gtccgtccaa atctcgcaac aatcggcgcg taaacaggca gccagcaccg
    10561 ccgcggagta gtcggaaccg ttacgtccaa gtaccaccag ttcgcctttt tcattaccgg
    10621 aggtgaaacc tgccatcaac accatgtgat cagccggaat gcggcttgcc gcaatacggc
    10681 gggtggactc agcaatatcg acggtagatt cgaggtaatg ccccactgcc agcagttttt
    10741 cgaccggatc gataacggta acgttgtgac cacgcgcttc taacacgccg gccataatgg
    10801 cgatcgacat tttctcgcca cggcaaatca gcgcagcgtt gatgctatcc gggcactgcc
    10861 ccaacaaact aatgccatgc aggacatgtt ttatttgggc aaattcctga tcgacgaaag
    10921 ttttcaattg cgccagcggg aaccccggct gggcggcggc gagtcccgtc aaaagttcgg
    10981 caaaaatacg ttcggcatcg ctgatattgg gtaaagcatc ctggccgcta atggtttttt
    11041 caatcatcgc caccaggtgg ttggtgattt tggcgggggc agagaggacg gtggccacct
    11101 gcccctgcct ggcattgctt tccagaatat cggcaacacg cagaaaacgt tctgcatttg
    11161 ccactgatgt accgccgaac ttcaacactc gcatggttgt tacctcgtta cctttggtcg
    11221 aaaaaaaagc ccgcactgtc aggtgcgggc ttttttctgt gtttcctgta cgcgtcagcc
    11281 cgcaccgtta cctgtggtaa tggtgatggt ggtggtaatg gtggtgctaa tgcgtttcat
    11341 ggatgttgtg tactctgtaa tttttatctg tctgtgcgct atgcctatat tggttaaagt
    11401 atttagtgac ctaagtcaat aaaattttaa tttactcacg gcaggtaacc agttcagaaa
    11461 ctgctatcag acactctttt tttaatccac acagagacat attgcccgtt gcagtcagaa
    11521 tgaaaagctg aaaaatactt actaaggcgt tttttatttg gtgatatttt tttcaatatc
    11581 atgcagcaaa cggtgcaaca ttgccgtgtc tcgttgctct aaaagcccca ggcgttgttg
    11641 taaccagtcg accagtttta tgtcatctgc cactgccaga gtcgtcagca atgccatgac
    11701 tcgttcgcgt aaagcttgca gttgatgttg gtctgccgtt gtgtcacttt tcgtcggttg
    11761 ttgtattaat gttgctaatt gatagcaata gaccatcacc gcctgcccca gattgagcga
    11821 aggataatcc gccaccatcg gcacaccagt aagaacgtca gccaacgcta actcttcgtt
    11881 agtcagcccg gaatcttcgc gaccaaacac cagcgcggca tggctcatcc atgaagattt
    11941 ttcctctaac agcagcacca gttctactgg cgtggcgtag taatgatatt tcgcccgact
    12001 gcgcgcagtg gtggcgacag tgaaatcgac atcgtgtaac gattcaacca gtgtcggaaa
    12061 aactttaata ttatcaataa tatcaccaga tccatgtgcg acccagcgag tggctggctc
    12121 cagatgtgcc tgactatcga caatccgcag ttcgctaaaa cccatcgttt tcattgcccg
    12181 cgccgctgcc ccaatatttt ctgctctggc gggtgcgacc agaataatcg ttatacgcat
    12241 attgccactc ttcttgacca aatgaccgcg aacagggtga tcactgtcaa cttattacgc
    12301 ggtgcgaatt tacaaattct taacgtaagt cgcagaaaaa gccctttact tatcttaaaa
    12361 aaggctaaac tatttcctga ctgtactaac ggttgaattg ttaaaaaatg ctacatatcc
    12421 ttctgtttac ttaggataat tttataaaaa ataaatctcg acaattggat tcaccacgtt
    12481 tattagttgt atgatgcaac tagttggatt attaaaataa tgtgacgaaa gctagcattt
    12541 agatacgatg atttcatcaa actgttaacg tgctacaatt gaacttgata tatgtcaacg
    12601 aagcgtagtt ttattgggtg tccggcccct cttagcctgt tatgttgctg ttaaaatggt
    12661 taggatgaca gccgtttttg acactgtcgg gtcctgaggg aaagtaccca cgaccaagct
    12721 aatgatgttg ttgacgttga tggaaagtgc atcaagaacg caattacgta ctttagtcat
    12781 gttacgccga tcatgttaat ttgcagcatg catcaggcag gtcagggact tttgtacttc
    12841 ctgtttcgat ttagttggca atttaggtag caaacatgca gaccccgcac attcttatcg
    12901 ttgaagacga gttggtaaca cgcaacgcgt tgaaaagtat tttcgaagcg gaaggctatg
    12961 atgttttcga agcgacagat ggcgcggaaa tgcatcagat cctctctgaa tatgacatca
    13021 acctggtgat catggatatc aatctgccgg gtaagaacgg tcttctgtta gcgcgtgaac
    13081 tgcgcgagca ggcgaatgtt gcgttgatgt tcctgactgg ccgtgacaac gaagtcgata
    13141 aaattctcgg cctcgaaatc ggtgcagatg actacatcac caaaccgttc aacccgcgtg
    13201 aactgacgat tcgtgcacgc aacctgctgt cccgtaccat gaatctgggt actgtcagcg
    13261 aagaacgtcg tagcgttgaa agctacaagt tcaatggttg ggaactggac atcaacagcc
    13321 gttcgttgat cagccctgat ggcgagcagt acaagctgcc gcgcagcgag ttccgcgcca
    13381 tgcttcactt ctgtgaaaac ccaggcaaaa ttcagtctcg tgctgaactg ctgaagaaaa
    13441 tgaccggccg tgagctgaaa ccacacgacc gtactgtaga cgtgacgatc cgccgtattc
    13501 gtaaacattt cgaatctacg ccggatacgc cggaaatcat cgccaccatc cacggtgaag
    13561 gttatcgctt ctgtggtgat ctggaagatt aatcggcttt accaccgtca aaaaaaacgg
    13621 cgctttttag cgccgttttt atttttcaac cttatttcca gatacgtaat tgatcgtcca
    13681 ttgtaacttc tttactggct ttcattttcg gcagtgaaaa cgcataccag tcgatattac
    13741 gagtcacaaa catcatgccg gccagcgcca ccaccagcac actggttccc aacaacagcg
    13801 cgctatcggc agagttgagc agtccccaca tcacaccatc cagcaacaac agcgcgaggg
    13861 taaacaacat gctgttgcgc caacctttca ataccgcctg caaataaata ccgttcatta
    13921 acgccccaat cagactggcg attatccatg ccacggtaaa accgatatgt tcagaaagcg
    13981 ccagcaagag caaataaaac atcaccaatg aaagccccac cagcaaatat tgcattgggt
    14041 gtaaacgttg cgcggtgagc gtttcaaaaa caaagaacgc cataaaagtc agtgcaatca
    14101 gcagaatggc gtacttagtc gcccggtccg ttaattggta ttgatcggct ggcgtcgtca
    14161 ctgcgacgct aaacgcgggg aagttttccc agccggtatc attgcctgaa gcaaaacgct
    14221 caccgagatt attagcaaac cagctgcttt gccattgcgc ctgaaaacct gactcgctaa
    14281 cttcccgttt ggctggtaga aaatcaccta aaaaactggg atgcggccag ttgctggtta
    14341 aggtcatttc gctattacgc ccggcaggca ccacagaaag atcgccggta ccgcttaaat
    14401 tcagtgccat attcagctgc aggttctgct tccgccagtc cccttcgggt aaagggatat
    14461 gcacgccctg cccgccttgc tctaacccgg taccgggttc aatggtcagt gccgttccgt
    14521 taacttcagg cgctttcacc acaccaatac cacgcgcatc cccgacgcta atcacaataa
    14581 agggcttgcc taagatgata tttggcgcgt tgagctcgct aagacgcgaa acatcgaaat
    14641 cggcttttag cgttaaatca ctgtgccaga cctgaccggt ataaatccct atcttgcgtt
    14701 cttccacgtt ctgattgcca tcaaccatca atgactcagg taaccaaaaa tggataaaac
    14761 ttcgtttccg ctccacggtt ttatcctctt cctgcaccgt ataaagctcg gtcacaggaa
    14821 tagcgataag cggcctaacg agtttttgcg gcccgctggt actttggcga atcgcatctt
    14881 ccacatcgct acggtaatcg gcacgttcga caatcacttg ccgaatcagc attatcggaa
    14941 tcaacaacag caatactgca ccaaacaagg tggtcatttt ccagaacagg ggggatttca
    15001 acatagtctt ctcctttgca atggcagcag gatacgaagg ctatgtggga agaatttgaa
    15061 gctatgtgaa gtgacggtga agtcgaagcg aggccagcac gccaccttcc tgcacgttgc
    15121 gcagcgtgac ttcgccgtta aacaaacggg cgacctcact gacgaacgcc aaccccagac
    15181 cgctgctttt ttgcccattt gcacgcggca aagagtaaaa gcgttcaaaa atacgtgaca
    15241 gcgcgtagtc aggaatacca ctaccggtat ccagcacctt aagggcgacg tgttcctgat
    15301 ccacttcggc gcttagcgtt atgcgaccgc tctcgggggt aaaatcgatg gcgttatcca
    15361 gtaaattccc cagcgcctgc tccagtaacg ccggttcagc agcaacatta acctcagtgg
    15421 gcataacatg tagagtgatg tttttttctg ccaactgcac ggtgcgcgct tcgctgacgc
    15481 ggcgaaataa tgccgccaca tcaacaacag tcagaacgac ttcctgacga ttctccagtc
    15541 ttgcctggcg tagtaacgtt tctaccaatg cctgcatacg cgcattttgc gtcagaatgt
    15601 tgtcggtaaa acgagccacc acttccggtg gcggaccttc gcgtaaaatt tccgccgcgc
    15661 cacgaatcgc cgccagtggg ctttttagct catgggttaa cgcataaaca tactgctcaa
    15721 tatagttttt cccttccagc ttcacgcgca tactttccag cgcctgcgca agcttacgca
    15781 actcgctact gccgagttca ggaagaggaa cgggcttatt gtcagtgacg gaatcggcat
    15841 agcgagtgag ccgggcaatg gagcggttga tccaccaaac catgcctgcg ccaatcacca
    15901 gtgcaatccc cagcaaaatg gcgctggccc ataaaattcg ccgctcgcta cgcttaatga
    15961 ccggagccat cgccgcgttc ggtttgccta cgctcaaaac gccaataagc cgcgagccgt
    16021 ccataatcgg cgcggcaaca tacatcaccg aactttcggg atcggcagga ttttgcaacg
    16081 tgctgcgcgc accatactga ccacgcaacg ttagccagac gtcattccag cgcgaataat
    16141 cctgcccaac ggctttattt gccgaatcga acaatacttt accctgcgaa tcggtcatat
    16201 agacatgata ttcattgcgc actttgttaa tgccaccgat attggcgcga aacggacgat
    16261 gttgtagctg attaaacgcc tgcgccagtt gcccatgcgt tgggtcccca gagagcaaat
    16321 cgggacgcgc cagctccgcc agcaacgttg cggtgtcgat caacgtcccc tccgttgctc
    16381 ttcgcacgcc cggtttaact tctttgacaa aaatagccag tacgaaccag gccgccaccg
    16441 ccaccagtaa aaaatagccc agcagcaacc gcatgccgat acgcattaca ggcccctcag
    16501 gctatatccc atgccgcgat gagtattaat cggtgaaaga tcggggttga tggcacgcag
    16561 cttggcatgc aacgttttaa tgtgggtatc aacggtgcga tcgtaggtgt cctgcgcatc
    16621 ttcccacacg ctatccatca gttgctggcg ggaccagacg cggcctggcg acttgagtaa
    16681 cgtcttcagc aataaaaact cataccgcgt cagcgttaat ggcgtgtcaa accagctgat
    16741 ctgcgccgcg ggttcattca attcaaaatg accaatacgg atgacgggag acggcgacga
    16801 gaacttcttc acccgacgca gtaaggtgcg caccctggcg cacacttcgc ggggtgaaaa
    16861 cggtttagcc acatagtcgt cagcgccaat ttccagccca agcaggcgat cgacctcttc
    16921 acttcgggcc gtcaggaaca gtacaggtaa cgccggatgg agcgccagta actggctgca
    16981 caattcaaag ccgctgatat caggcaaacc aacgtcgaga atcatgacgt cgggaaccag
    17041 ctggcgagct ttatccagca ccggcaagcc tcgctcaaag acctcgacgg caaaaccttc
    17101 ctgctgcaac atgtagacca gcgtgtcggc tatcccttgc tcatcttcca ctaaccagac
    17161 cgtttcccgt tgtataaatc gcctctgtta ttgccgccac ggcatgacag gaaccgcgct
    17221 aatcgcgttt ttcggcgaac cttctacaac tttgtcggag taagccagat aagcgagcgc
    17281 gttgcgtttg gcgtcataaa agcgcacgac ctgtaacgac ttaaagacca gggacgtgcg
    17341 ttttttgaat actacctcgc cctgagcttt gccgttttta atacgatccg acagttcaat
    17401 cggcccgact tgctgacaag aaatagccgc atcggaggta tcttccgcca gacccaatcc
    17461 ccctttaata ccacctgttt tcgcccggct cacataacag gtgacatttt tcacatcggg
    17521 atcgtcaaag gcttccacaa caattttgtg atccgggccg atcattttaa atacggtgtc
    17581 gaccgaacca atctcttctg catgagccaa tggccccagc attatcaggc ttaaagacag
    17641 gatcaaatgc ttgtatttca tattgttacc atttttatct attacacgag caattagttc
    17701 gtcacggtaa ataacatatt gattaagaac aaaatctcaa tacttttatt tccgtcaagc
    17761 cctaaaacat actctactaa gaaaaaaaca ctgaatgcta aaacagcaaa aaatgctatt
    17821 atccaattac ctgatgtcag gtgctcgttg ttgaaaggat gaggatattt tatggatcag
    17881 gccggcatta ttcgcgacct tttaatctgg ctggaaggtc atctggatca gcccctgtcg
    17941 ctcgacaatg tagcggcgaa agcaggttat tccaagtggc acttacagag aatgtttaaa
    18001 gatgtcactg gccatgctat tggcgcgtat attcgtgctc gtcgtttgtc gaaatcggcg
    18061 gtcgcactac gcctgactgc gcgtccgatt ctggacatcg cgctgcaata ccgcttcgac
    18121 tctcaacaga catttacccg cgcattcaag aagcagtttg cccagactcc tgcactttac
    18181 cgccgttctc ctgaatggag cgcctttggt attcgcccgc cgctacgtct gggtgaattc
    18241 acaatgccag agcacaaatt tgtcaccctg gaagatacgc cgctgattgg tgttacccag
    18301 agctactcct gttcgctgga gcaaatctct gatttccgcc atgaaatgcg ttatcagttc
    18361 tggcacgatt ttctcggcaa cgcgccgacc attccgccag tgctctacgg cctgaatgaa
    18421 acgcgtccga gtcaggataa agacgacgaa caagaggtat tctataccac cgcgttagcc
    18481 caggatcagg cagatggcta tgtactgacg gggcatccgg tgatgctgca gggcggcgaa
    18541 tatgtgatgt ttacctatga aggtctggga accggcgtgc aggagtttat cctgacggta
    18601 tacggaacgt gcatgccaat gctcaacctg acgcgccgta aaggtcagga tattgagcga
    18661 tactacccgg cagaagacgc caaagcggga gatcgcccaa ttaatctgcg ctgtgaactg
    18721 ctgattccta tccgccgtta acgctgcagc tcatctaatg caggggcgtc cagatgcgag
    18781 atgtcccctg cggtttcaac gacccagcca gacgccagcc acaggctttc ctgataatcc
    18841 acgcgcgaaa tagaacagtt acgcagacgt aagcggcgcg ctgcccatgc tggtaatccg
    18901 agaatcgtac tcaccagaca tcccagtgca ataccatggc tcaccagcag cggtcggctt
    18961 ccctgcggta agtcccggca agattccagt gccgcattga cgcgatcgct gagctcctgc
    19021 attgactcgc cttcaggaat acgcccgtca acggtgccat tgaccagctg ccgacgccag
    19081 ttctcttctt cttcggtcag agaatcgata tgtctttttt ccagcacacc catgtttaat
    19141 tcacgcaggc gagaatcaaa gatgatgtca cagccgcagg cctgggcgat gatttccgcc
    19201 gtacgccggg tgcgtcctaa atcgctactg ataatatgcg taatgccaag ctctttggca
    19261 cgggttgcca cctgcatcgc ctgttgctca cctttggcgg tcagcgggct gtcagactgg
    19321 ccctgaatac gtcgctcggc gttccactgc gtttcaccgt ggcggactag gtatacctgt
    19381 aacatgcttt ttttccgtat actgctgtaa cgttaatttt ctgagtaatg ctgattatgc
    19441 accaagttgt ctgtgcgacc accaatcccg ctaaaattca ggccattctg caggcatttc
    19501 acgagatctt cggcgaagaa tcctgccata ttgcatccgt tgccgtcgag agcggtgtac
    19561 cggaacagcc ctttggcagt gaggaaacgc gcgctggcgc acgaaatcgg gtagcaaatg
    19621 cccgccgttt acttccagag gctgattttt gggtggcgat tgaagctggc atcgatggtg
    19681 acagcacttt cagttgggtg gtgattgaaa acaccagcca gcgcggcgag gcgcgttcgg
    19741 ctactttgcc gttacctgcg gtgattctgc agaaagtgcg tgaaggtgag gcgcttggtc
    19801 ccgtgatgtc gcgttatacc ggtattgatg agattggtcg taaggaaggg gcgatcggcg
    19861 tgtttaccgc cgggaaactc actcgcgcca gcgtctatca ccaggcggtg atcctggcgc
    19921 tgagtccgtt tcacaatgcc gtgtatcagg cattgtagga cggataaggc gttcacgccg
    19981 catccggcat tcggtgcacg atgcctgatg cgacgctgcc gcgtcttatc aggcctacaa
    20041 aatcaatcgc ttttcagcaa cacctcttcc agccactggc gcagctccac gggcgcggct
    20101 ttcaggctgt tagatccacg cgtaatcgtc gcgatgcccg cgccgagttc attttttaac
    20161 tcacgctgac tcatttcgcc acgcaacagc tcttcgacaa tacgcacgcg agtccccaac
    20221 gcttcgcgct catctggcgt cagcatcagg tttaacaacg gtaaatggag atcgttttgg
    20281 taggcattct taagcaggtc gacaaaacgt aaccactcct ggtgacgctg ttctgccatc
    20341 gctgctgaat agggtgattg ttgggccata atatgtcgcc attgttagcg ggggaagcaa
    20401 aatgcctccc ccggttgtac tcgctaaaga gtacgatagc atatcataaa cgtgcggatc
    20461 agtaacgacg tccccattcc gtggcgctca tcaacgtcgg tttatccccc atgaaataac
    20521 ggtagtaagc gtcataagcc agcacgttct tcacataacc gcgcgtctcg gagaacggaa
    20581 tactctcgac aaatgccaca gcgtcgatac gcccggcgct gttgccaagc caggttcgca
    20641 cccgtccagg tccggcgtta taagctgctg aggagaaaat acggttattg ccaaactgct
    20701 gataaacata ttgcaggtaa ctggtgccaa tgttgatatt cgtttccgga tccagcaatt
    20761 gcccagggct gctataacca ggaatagaga acatcttcac cgtatgggtc gctgtaccag
    20821 gcataatctg catcaggccg ctggccccta ccggtgattt cactttcgga ttccaggcgc
    20881 tctcctgacg ggcaatcgcc atcgcatagc tttgcgggat ctctttccca ctggtgtaac
    20941 gtttgaaaag atcgttgtaa gccagcggga atcgctcttc cagatgatcc caaagcttcc
    21001 cggcgatcgt tgcctgaacg ctaagatccc accattggtt attgaaagca taccgagcca
    21061 gttgagcctg ctctgttttt gacttgctct tcaccagatt ggcccactcg ctacgcgcgg
    21121 tgttatcgag attccagtac atcaactcgc gcacgcgcgc catctccggc ccctgagtca
    21181 gggcgctgtc aacattctgc ggcgctttat caatcttcag ctcatactct tctccgatgc
    21241 gttgtgctgc aaccatcggg tagaaaccac gctgttgcat gagttgatgc aaaatctctt
    21301 tcgcttcagc ttcacgtccg cgttccagca ataaatccgc ctgccagtaa cgccattcat
    21361 ctttctcttt tgcttccatc ggcagacgcg ccagccaggt attcaggccg cgacgatcgc
    21421 cggtgccaag tgccattcgc acacggcgtt caatcaacga cgtggattgc gagcgcataa
    21481 tggcgtcatc gcgccatttc gcctgctcgt cggtgacatc gttgcccatc aaacgccagg
    21541 cgacgatatc gcgcagctcc tgaatctgat cttcattaag ctgctgcgcc tgggcaagcg
    21601 acgggatcat cagccgtgca ttttcagcat cctgccgcgc cacactggca aacgccaccg
    21661 ctgctatttg acgggtaaaa tcggtcgctc cggttgtacg cgcgaaggtc agtaccgtat
    21721 tagggttgtt cgccagtgaa atgattgccg aggcgatagt ctggtaatcg gcaggcatct
    21781 gccctgccag cactgttacc aggccagtgt tacccgcttt catcgccaga cggatacgct
    21841 ctaaatacgc cagcggatct tgtttacctg acgcacgcca gacgctaaat aacttgtcac
    21901 aggcgttagg ctggctcttg ccggttagcc acagctcttt cgccccttgc caggcttctt
    21961 cactctgccc ggtgttccat ttcgcatagt agtaattaca ttgcgcttcg gtagttccgg
    22021 gcttttccgg gctaaaggct aacaagccac gccagtcttc acgccgcgcc agttcattga
    22081 cgaaacgaga ttgcagcgtg cgagcgggag gaagcgtggg gttagcgcga acaaagttag
    22141 tgaccgtcac cgccggttga ttcatcagat catcggtgat ctggcggtat tccaggtagg
    22201 gataaagcgg ataatccttc agtccaggca tcatttgttc gaccacatcc atttgtcgat
    22261 tatcccaggc ctgcttgatt tgcgcgtaac ggctacgctg ctcatccagt gagtcggctc
    22321 gcgccacgct gctgaccgtc agcagacaga caccggcagc caacagccgc caggtaactt
    22381 gtttggcttt ttccacaagc gcatcctcta agtgtaaata catcaatgca gcgtcatgcc
    22441 gcgtaataga tttatgctaa ccagtcattg ccgtttacgc cacgttacgg acactttttt
    22501 acttttactg cgaagatgat cgaccaactg ggattaggcg gggaaaaagg ctacacttcg
    22561 cctttgaaaa ctcatcatca cgataaacat agaggcgaag tccaacgtgg ctcaattcgt
    22621 ttataccatg catcgtgtcg gcaaagttgt tccgccgaaa cgtcatattt tgaaaaacat
    22681 ctctctgagt ttcttccctg gggcaaaaat tggtgtcctg ggtctgaacg gcgcgggtaa
    22741 gtctaccctg ctgcgcatta tggcgggcat tgataaagac atcgaaggtg aagcgcgtcc
    22801 gcagccagac atcaagattg gttacctgcc gcaggaagcg cagctgaacc cggaacacac
    22861 cgtgcgtgag tccattgaag aagcggtttc tgaagtggtt aacgccctga aacgcctgga
    22921 tgaagtgtat gcgctgtacg ccgatccgga tgccgatttt gacaagctgg ccgctgaaca
    22981 aggccgtctg gaagagatca ttcaggctca cgacggtcat aacctgaacg tacagctgga
    23041 gcgtgcggcg gatgcgctac gtctgccgga ctgggacgcg aaaatcgcta acctctccgg
    23101 tggtgagcgt cgtcgcgtag cgttgtgccg cctgctgctg gaaaaaccag acatgctgct
    23161 gctcgacgaa ccgaccaacc acctggatgc cgaatccgtg gcctggctgg aacgcttcct
    23221 gcacgacttc gagggcaccg tggtggcgat tacccacgac cgttacttcc tcgataacgt
    23281 tgcaggctgg atcctcgaac ttgaccgcgg tgaaggtatt ccgtgggaag gcaactactc
    23341 ctcctggctg gagcagaaag atcagcgcct ggcgcaggaa gcttcacaag aagcggcgcg
    23401 tcgtaagtcg atcgagaaag agctggagtg ggtacgtcag ggaactaaag gccgccagtc
    23461 gaaaggtaaa gcacgtctgg cacgctttga agagctgaac agcaccgaat atcagaaacg
    23521 taacgaaacc aacgaactgt ttattccacc tggaccgcgt ctgggcgata aagtgctgga
    23581 agtcagcaac ctgcgtaaat cctacggtga tcgcctgctg attgatgacc tgagcttctc
    23641 gatcccgaaa ggggcaatcg tcgggatcat cggtccgaac ggcgcgggta aatcgaccct
    23701 gttccgtatg atctctggtc aggaacagcc ggacagcggc accatcactt taggtgaaac
    23761 ggtgaaactg gcatcggttg atcagttccg tgactcaatg gataacagca aaaccgtttg
    23821 ggaagaagtt tccggcgggc tggatattat gaagatcggc aacaccgaga tgccaagccg
    23881 cgcctacgtt ggccgcttta actttaaagg ggttgatcag ggtaaacgcg ttggtgaact
    23941 ttccggtggt gagcgcggtc gtctgcatct ggcgaagctg ctgcaggttg gcggcaacat
    24001 gctgctgctc gacgaaccaa ccaacgacct ggatatcgaa accctgcgcg cgctggaaaa
    24061 cgccctgctg gagttcccgg gctgtgcgat ggttatctcg cacgaccgtt ggttcctcga
    24121 ccgtatcgcc acgcacatcc tggactacca ggatgaaggt aaagttgagt tcttcgaagg
    24181 taactttact gagtacgaag agtacaagaa acgcacgctg ggcgcagacg cactggagcc
    24241 gaagcgtatc aagtacaagc gtattgcgaa gtaatgcgta aaatgccgga tgcggcgtga
    24301 acgccttatc cggcctacaa accaagaaat ttcaatacgt tgtgaatctc caggcctgat
    24361 aagacgcggt aagcgtcgca tcaggcattg agcaccgaat gccggatacg gcgtgaacgc
    24421 cttttccggc ctacaatagc cttagtatcc gcaatttcgt agcgggtcac ccgtgctgat
    24481 tcttttaaac cttgtttaat ctcgacagcc tcttccagag aggttttcaa ctcatcaaaa
    24541 aacttatttt atacctcgcc tttgagccgt ttcatcgcgg ttatctctgc tcccccatca
    24601 tctcccgcac cagctccacg cagcgcagga aacggctgtc ataatcgtcc tcttcaaccc
    24661 gcacgaattc gatattgttc tcttccagca tctccaccag caagttctgg aactctttgc
    24721 gatccaccga actgccgagg ctgcgtaaac catccgccac ccacggcgtg ttgttctcca
    24781 gcaggatcac cagatcgaaa cggtattcat caatcaacgc ctgtacgaac ggatgctcac
    24841 gcccttcgta ctttttgcag aacgcctggg tagtgacaaa atcagtgtca ataaacgcca
    24901 ctttattggc atatttcact gcaaaatcaa tgtattgtgc gtggcccagc gcgattttat
    24961 cgtaatcgga atactgcaat gcgatctcat caccgccgag gtgtgaaaag acataatcgc
    25021 gaccatattc ccacgcactg gtggtattga agatattggc aagtttgttt accagggtgg
    25081 atttaccgct cgactcgcca ccaaggatcg ccacggtacg tacaaagaac ggcttcactt
    25141 ccgtaggaat atattcccag tagcggaacg ggttttcgcg gatctgcgca ccgctgatac
    25201 tcataaaggt acgtttcgga tcgaccagca ccgtatcgat ccccagatgt tccatatact
    25261 gtggcgcatc ggcttcttcc gaggtgtaga tcaggtccgg ctgaatcccc ttttcagcca
    25321 taaacttttt gatgccgttg ctccacacat cccagccgtg cggatacggc tccatgccct
    25381 cttcgttgaa agcatgaatg cgaatatttt tctgatattt aaaagtttgt aataaccagc
    25441 gcagacgatc cggcaccgtg ggctgctgcg acatggcgct gtcttcaaac aacgcgcggt
    25501 cgcgggtatc gtcaaaaccc ataatgatat gcagctcgtc aacctggcta caggcgcgct
    25561 ggataaggta gatatgtccg gtatgcagcg ggtagaactt accgaatacg acaccaatgg
    25621 ttttcttctg tcggggaaat tcaagcccca aaaaacggtg caacgcctcc agcttttgcg
    25681 cgctggggct tttaattttg gcattcagta actggcttaa ataccctttg gtcataccgc
    25741 tggcatcagc tacctgctgt agcgtgcagc cctgttgctt gatggcagtt ttcaggtaat
    25801 caaatgacga catatctccc tccgtatctc tcattataag tcgtcgaaca cgctaagcgc
    25861 gtcggagagt tttttaacgc caaaaatctg catcccttcc ggcgcttttt tcggtacgtt
    25921 agccgccgga acaatcgccc ggcgaaaacc gtgtttcgcc gcttctgaaa ttcgttcctg
    25981 accgctgggc accgggcgga tctcccctgc cagcccgact tcaccaaaca ccaccagatc
    26041 ctgtggcagc ggtctgtcac gcaggctgga aaccatcgcc agcagtaacg ctaaatcggc
    26101 actggtttcg gttaccttca cgccgccgac cacgttcaca aatacatcct gatcggccat
    26161 ttgcagacca ccgtgacggt gcaagacagc cagcaggatt gccagacggt tttgttccag
    26221 ccctactgcc acgcggcgcg gattcgccat catcgagtga tcgaccagcg cctgaatctc
    26281 caccagcaac ggacgcgttc cttcccacac caccatcacg gagctgccgg aggtcacttc
    26341 atctccgcga cttaagaaaa ttgccgaagg gttgctgact tcacgcagcc cctgttcggt
    26401 catcgcgaag acgcccagct cattcaccgc gccgaagcgg tttttatggc tgcgcaaggt
    26461 gcgaaaacgg gagtcggcat caccatccag aagcaccgaa cagtcgatac agtgttccag
    26521 cactttaggg ccagccagcg agccatcttt ggttacgtgc ccaaccatga caatcgccac
    26581 accgcgcgtt ttggcgaagc gcgtcagata agccgccgtt tcacgcacct gcgccacgct
    26641 accaggcgat gattgtacat ccgccatatg catcacctgg atcgagtcaa ttaccatcag
    26701 tttcggttgc tcttcttcgg caatcaggca gatctgttcg atgctggttt ccgacaacat
    26761 attgagattg tcagtcggca ggccaaggcg atgagcgcgc attgccacct gttgcagcga
    26821 ctcttcgcca gtgacataca gcgttttcat ctgctgggcc agtttgcaca gcgtttgcag
    26881 tagcagcgtg gatttccccg cacctgggtt accgccaatc agaatggcgc ttcccggcac
    26941 cacgccgccg cctagtacgc ggtcgaactc tttaaatccg gtggaaaaac gcggcagctc
    27001 ttcaaggctg atatcggaga gtttctggac ttttgccacc ccggcgctac cggcatagcc
    27061 gctgagacgc tcgttacgcg ccaccgttgg cgacgcagca agacgcacct cggtgatggt
    27121 gttccaggca tgacaggcac tgcactgccc ctgccagcgc ggataatcgg ccccgcattc
    27181 attacaaaca aaggcgcgtt ttggagcttt tgccacggtg tacctcgtta atgctgtgcc
    27241 gcccgcagga tggcgggcga gcaattactt ctgattcagg ctgccagaga ggatgcagaa
    27301 tacccccatc aggtcagcgt gacggatggt gacttccgcc ttttcattca cttttggctt
    27361 ggcatggtag gcaatcccca gccctgctgc tttgatcatc ggcaggtcat tagctccatc
    27421 gccaatcgcc acggtctgcg ccagcgggat ttcatactcc tgcgcgaggc gagtcaaagt
    27481 tttcgctttg tactgcgcgt ctacgatgtc gccgatcaca ttgccggtaa atttaccgtc
    27541 catgatctcc agttcattgg ctaccacggc ggtcaggcgc agcttgtcgc gcagatattc
    27601 agcaaagaaa gtaaagccgc cggaggcaat cgccactttc cagcccagcg tttccagctt
    27661 gagcaccagt tgcgttaagc ctggcatcag cggcagattt tcacgcacct gttgcagaat
    27721 attggcgtca gcgcctttca gcgtcgccac acggctgcgc aggctggcgg taaaatcgag
    27781 ttcgccgcgc atcgcccgtt cggttacttc cgccaccatc tcgcccgttc cggccagttt
    27841 ggcaatttca tcaatacatt caatctggat ggcggtggaa tccatgtcca tcaccagcaa
    27901 acccggcgtg cgcaggtgcg ggattttccc cagcggggcg acatccagtt gcgcttcatg
    27961 ggccaggcgc gtagcccgtg cggtgagtga acctgccaga cgaatcacct gataatcttc
    28021 cacgcaccag gcggcaacaa tcaccatcgc cgcacccagt ttgctctggt attgggtcag
    28081 acgctgttta tccagcccac gaccatacag cagccagccg ctacgacctg cgtggtaatc
    28141 cagtggcatc acttcatcac cacttaatga aagaggcaga ccaggccata aagagacatc
    28201 ttcaggcagg tcgcaccagg taatgttagg cattaaggct cctgtaaaat cgttcgaagc
    28261 agggaaaata acgcatgagg ctaccttgta tccattgctt ctggcaacat taagtctcaa
    28321 attttcaaag ggtggaagat ggctcgcaca aaactgaaat tccggctgca tcgggcagtg
    28381 attgtcctgt tctgtcttgc cttgttagtg gcgctgatgc agggagcgtc atggtttagt
    28441 caaaaccacc agcgacaacg taatccacag ctggaagaac tggcccgcac cctggcgcgt
    28501 caggtaacgc tgaacgttgc accgctgatg cgtaccgact caccggatga aaaacgcatt
    28561 caggcgatcc tcgatcagtt aacggatgaa agccgtatcc tcgacgcggg tgtgtatgac
    28621 gaacaaggcg atcttatcgc acgttctggc gaaagcgtcg aagtgcgcga ccggctggcg
    28681 ctcgacggta aaaaagcggg cggctatttt aaccagcaga ttgtcgaacc aattgccggg
    28741 aaaaacggac cgctcggcta tctgcgcctg acgctcgaca cccatacgct cgccaccgaa
    28801 gcccaacagg tggataacac cactaacatt ttacgcctga tgttgctgct ttcactggca
    28861 atcggcgtag tgctgacccg cacgctgcta cagggtaaac gtacccactg gcagcaatcg
    28921 cccttcctgt taaccgccag caaaccggtg ccggaagagg aagaaagcga gaaaaaagag
    28981 tgacccatta ctacaagaaa ggaaatcgtt atgtccacat tacgcctgct catctctgac
    29041 tcttacgacc cgtggtttaa cctggcggtg gaggagtgta tttttcgcca gatgcccgcc
    29101 acgcagcgcg ttctgtttct ctggcgcaat gccgacacgg tagtgattgg tcgcgcgcag
    29161 aacccgtgga aagagtgtaa tacccggcgg atggaagaag ataacgtccg cctggcacgg
    29221 cgcagtagcg gtggcggcgc ggtgttccac gatctcggca atacctgctt tacctttatg
    29281 gctggcaagc cggagtacga taaaaccatc tccacgtcga ttgtgctcaa tgcgctgaac
    29341 gcgcttggcg tcagcgccga agcgtccggg cgtaacgatc tggtggtgaa aaccgccgaa
    29401 ggcgaccgca aagtctcagg atcggcctat cgcgaaacca aagatcgtgg cttccaccac
    29461 ggcaccttgc tgctcaatgc cgaccttagc cgcctggcaa actatctcaa tccggataaa
    29521 aagaaactgg cggcgaaagg cattacctca gtgcgttccc gcgtgaccaa cctcaccgag
    29581 ctgctgccag ggatcaccca tgagcaggtt tgcgaggcca taaccaaggc ctttttcgcc
    29641 cattatggcg agcgtgtaga agcggaaatc atctccccgg acaaaacgcc agacttgcca
    29701 aacttcgccg aaatctttgc ccgtcagagt agctgggaat ggaacttcgg tcaggctccg
    29761 gcattctcgc atctgctgga tgaacgcttt agctggggcg gcgtggaact gcatttcgac
    29821 gttgaaaaag gccatatcac ccgcgcccag gtgtttaccg acagcctcaa ccccgcgccg
    29881 ctggaagccc tcgccgggcg actgcaaggc tgcctgtacc gcgcggatat gctgcaacaa
    29941 gagtgcgaag cgctgttggt tgacttcccg gaccaggaaa aagagctacg ggagttgtcg
    30001 acgtggatag cgggggcggt aaggtaactc gctgattaaa ataccaaagg aagggaatat
    30061 gatcgatctg gaaaaccagg agcgggagat tatcaattta atgttaagcc agcgtatttc
    30121 ctggctagcc gccgtgcgta tcaggcataa attatcgctt gctgaagtaa gtaaaatgtt
    30181 aggtatctcg attaattctc taaaatagat cgaaaagacg gaacggttta gctcaaacat
    30241 caaaagcaaa atggcagaaa tttatggttg tccaccagag ttgctgatat gcccttcctg
    30301 gatgacggct gaacataaat gaatagattc gtgaatagat acttgaatag attttatttt
    30361 ctatccatat gaaaaataat agtaaatcta taaatcagtt gctattgatg aatagatact
    30421 aaaaagccgg agcagtctcc cactccggct tcacacgaca atcgcctttc agcgaaacac
    30481 aattactctt tatcgcccag cagaacggat tccagtgcga ttttgatcat gtcgttgaag
    30541 gtggtctgac gctcagcggc agtggtctgc tcgtgagtgc ggatgtggtc agacacggta
    30601 cagatggtca gggctttcgc gccaaattct gcagcgacgc cgtagatacc agccgcttcc
    30661 atttccacgc cgaggatgcc gtatttttcc atcacgtcga acatttcgcc gtccggagag
    30721 tagaacaggt cagcggagaa caggttacca acgcgagcat caatgcccag tgctttagcc
    30781 gcgtctaccg cgttacgcac catgtcaaag tcagcgatag cggcaaagtc atgatcttta
    30841 aaacggatgc ggttaacttt ggaatcggtg caggcaccca taccgataac gacgtcgcgc
    30901 agttttacgt gcggcagaac tgcgccacag gaacccacgc ggataatttt cttcacgccg
    30961 aaatcggtga tcagttcttt ggtgtagatg gagcaggacg ggatacccat accgtgaccc
    31021 attacggaaa ttttgcggcc tttgtaagta ccggtgaagc ccagcatacc gcgaacgttg
    31081 ttcacttcac gggcatcttc aaggaaagtt tcagcaatat acttcgcacg cagcgggtcg
    31141 cctggcatca aaactacgtc agcgaaatcg cccatttctg cattaatgtg tggggtagcc
    31201 attgttttat ccttatcaac atgttttcac cctctccctg tgggagaggg ccggggtgag
    31261 ggcatcaagc cgcacccatt atcagaacat ggctttgcca tattccatat cagaagtacc
    31321 aaaatatttt gccagagtct ggccgatatc cgcgaaggtt tcacggtgac ccagtgaacc
    31381 cggttttact ttcgggccgt aaaccagtac cggaatgtgt tcacgcgtgt ggtcagtacc
    31441 ggtccaggtc ggatcacaac cgtggtcagc agtgaggatc aggatgtcgt catcgcgcag
    31501 caaagacatc agctccggca gacggcggtc gaacagctcc agacccgcag cataaccggc
    31561 gacgtcgcga cggtggcccc aggaagagtc gaagtcaacg aagttggtga agacgatggt
    31621 gttatcaccc gcttctttca tctctttgat ggtggcgtca aacagcgcgt ccaggccagt
    31681 tgctttcact ttcttggtga taccgcagtt ggcgtagatg tctgcaattt taccgacaga
    31741 aaccacctga ccgtgttttt catcaaccag tttctgcagc acggtcggtg ctggcggctc
    31801 aacagccagg tcgtgacggt taccggtacg ctggaagtta ccggctttgt caccgataaa
    31861 cggacgagcg ataacacgac cgatgttgta gccgccgttg gtcagctctt cacgggcgat
    31921 ttcgcacagt tcgtagagtt tatccaggcc aaaggtttct tcgtggcagg caatctggaa
    31981 cacggagtca gcggaggtat agaaaatcgg cttgccggtt ttcatgtgct cttcgcccag
    32041 ctgatccaga atgaccgtac cggaagagtg gcagttaccg aggtaacccg gcagattagc
    32101 gcgttcgacc agtttatcca gcagctcttg cgggaagctg ttttcgtgat cggagaagta
    32161 tccccactca aacagaaccg ggacaccggc gatttcccag tgaccagacg gggtatcttt
    32221 accggatgac atttcgtgcg cccatgcgta cgcgccgata acttcagcgt tgccgtccat
    32281 tcccgccgga atgaaaccgg tagaaccttc gtgtgctttc gccagcccca gacgggtcag
    32341 atttggcaga ttgagcgggc ctttacgacc gttatcagct tcgcctttgg cacaagcttc
    32401 tgcgatatga cccagggtgt cagccccgac gtcaccaaag cgttctgcat cttctgtagc
    32461 gccgatgccg aatgagtcca gcaccataat aaatgcacgt ttcatatgtt ctccgtactc
    32521 agtgcttcaa atttaaatga tcagatcagt ataccgttat tcgctgatac ggcgatagac
    32581 agttggtgtg ctttccggtg ctttatcggc aagtttaatt gccgctttca ccgctttcgc
    32641 cgcttcctgc cagctgtttt cgtctttcgc gtggataacc gccagcggac gctgaccgtc
    32701 tacttggtcg cccagacgcg ccatatcagt aaagccgacg ctgtaatcga tggtgtcaga
    32761 tgcctgacga cgaccgccgc ccattgcaac cactgccatc cccagcgcgc gggtatccat
    32821 ttcactgaca aaaccttcgg tatcagcata gactgctttc gtcagcatcg ctgtcggcag
    32881 atacttcgcg tagttctcaa cgaagtcggt cgggcctttt tgtgccgcta ccatacgacc
    32941 aaagacttct gccgctttac cgttgtccag caccgcctgc aatttcgcgc gcgcttcggc
    33001 gtcatctttc gccagtttgc cggagatcag catctccacg cacagcgcca tcgtgacatc
    33061 aaacagacgc gggttacgat attcacccgt caggaactgc accgcttcac gaacttcaac
    33121 cgcgttacct gcactggagg ccagtacctg attcatgtcg gtgagcagcg cggtggtgcg
    33181 cacgccagcg ccgttagcca cgccaacaat cgcttcggca agggcttcag agagttcgta
    33241 ggtcggcata aacgcgccgc tacccacttt cacgtccatc accagcgcat ccagaccttc
    33301 cgccagtttc ttcgccagga tcgaggcagt gatcagcggg atggagtcca cggttgcggt
    33361 aatatcacgg gtcgcgtaga aacgtttatc cgccggagcc agtgagctgg tctgaccgat
    33421 aatcgccacg ccgacgtctt taataatttc gcggaaacgg ttgtcatccg ggaaaatgtc
    33481 gaagccaggg atggattcca gtttgtcgag cgtaccgcca gtatgaccga ggccgcgacc
    33541 ggagatcatc ggaatatagc cgccgcaggc tgcgaccatc ggccccaaca tcagcgaagt
    33601 gacatcgccg acgccgccgg tggaatgttt atcaacaatc gggccattca gatgcaggct
    33661 tttccagtcg agaacggttc ctgaatctcg catcgccatg gtcagcgaga cacgctcagg
    33721 cattgtcata tcgtggaaga aaatggtcat cgcgagggcg gcaatctgcc cttcggagat
    33781 agtgttgtcg cgaatgccgt tgataaagaa acgaatttct tcatcgctca gtgcatgacc
    33841 atcacgtttt ttacgaataa tttcttgtgc gagaaacaag gtaacctccc gaggaaaaga
    33901 gtatgaggcg gcttttgccg gatgcgtcta cgccttatcc ggcctacggg tagatacgtc
    33961 tcgtaggcct gataagcgca gcgcatcagg cgtaaagcat cttgcttagt agctgctggc
    34021 gctcttaccg tcaccgtggc ccagcgcttt caacaggctt gccagcaggc tggaagcacc
    34081 aaagcggtag tgacgcgcat ctgcccagtc agcaccgaac agttcatctg cgatggcgag
    34141 atatttctgc gcatcttccg cagtacgcac gccgcccgcc ggtttgaaac caacggtttt
    34201 ttctacgccc atatcacgga tcacttccat catgatgcgc gcgctttccg gcgtcgcgtt
    34261 cactgccact ttaccggtag aggttttgat gaagtcagca cccgctttga tggagatttc
    34321 agacgcttta cggatcagcg cttcgtcttt cagttcgccg gtttcgatga tcactttcag
    34381 cagtacattc gctgccgcgc aagcctcttt acaggctttc accaggtcaa aaccaacctg
    34441 ctcgttaccc gccatcagcg cgcggtacgg gaacacaacg tcaacttcat cagcaccgta
    34501 ggcgattgcc gcacgggttt ctgccagcgc gatttcgatg tcatcgttac cgtgtgggaa
    34561 gttggttacc gtagcgattc ggatttccgg ggtgccctgc tctttcagcg ttttgcgagc
    34621 aatcgggata aagcgaggat agatacagat agcggcggta ttgccgaccg gagttttggt
    34681 ctgatgacac agagcaatta ctttctcgtc ggtgtcgtcg tcattcaggg tggtcaggtc
    34741 catcaatttc agtgcacgca ggctgcttgc tttcagatca gtcatttcat tctcctggct
    34801 tgtcgccaat aaaattcacc ttgcgagttt gttagtattc taacatctac tccgcaacac
    34861 acttcgatat acatcacaat taaggaaatc tacttacaag tttgcatcac agtaatgcga
    34921 tctggttcaa ataattcact ttcaaatgaa tgcgtcagtg gtggcaaacg catcaggatc
    34981 aaagtgaaca tcacgaaact tcttacaatg gcgcatcacc ttcggcataa aaggaaaaga
    35041 agatgcccac ttctcatgaa aatgcactgc aacaacgttg ccagcaaatt gtcaccagcc
    35101 cagtgcttag cccggagcag aagcgccatt ttctggctct ggaagcagaa aacaatctgc
    35161 cttatccgca gcttcctgcc gaagcccgcc gcgcgctgga tgagggtgta atctgcgata
    35221 tgtttgaagg tcatgcgccg tacaaaccgc gctatgtctt acccgattac gcccgttttc
    35281 tggcgaacg
//
LOCUS       DADMHM010000018        35106 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.019, whole genome shotgun sequence.
ACCESSION   DADMHM010000018 DADMHM010000000
VERSION     DADMHM010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 35106)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35106)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35106
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.019"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..290)
                     /locus_tag="JN125_000771"
     CDS             complement(<1..290)
                     /locus_tag="JN125_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000735989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870640.1"
                     /translation="MKKLPPAPFFRLNRAAELLEIDIDDLLIMAAAESIYLSAYLCGY
                     DGTLHSIASLYRNCSLFPDVKEDCLLLADIITEVEDEKSFKAGVVNHIDCHVL"
     gene            complement(386..1645)
                     /locus_tag="JN125_000772"
     CDS             complement(386..1645)
                     /locus_tag="JN125_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014639344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HAY8870641.1"
                     /translation="MPKLTDMQIRAWIKSGERFEGRADGNGLYLRYREADKTPTWRFR
                     YKLAGKSRAMLIGSYSELSLSKARETAKELSARVALGYDVAGEKQKHKTEALAKMEAE
                     KNAMRVSELAAEYFERQILPRWKHPDILRRRIDKDINPCIGSMKVEDVKPRHIDDMLK
                     GIVDRGAPTIATDVLRWTRRIFDYGIKRHALEINPCSAFEVADAGGKEAARDRWLTRD
                     ELIQLFKAMRTAKGFSRQNEITFKLLLALCVRKMELCAARWEEFDLDGAVWHLPEERS
                     KNGDPIDIPLPSPAVEWLRELHTFSCNSAWVLPARKMQNRMIPHIQESTLPVALAKVR
                     AEMPDVPNFTIHDFRRTARTHLAALGVDPVVAERCLNHRIKGVEGIYNRHQYFDERKA
                     ALAQWADLLVALESGKDYNVTPLRRAN"
     gene            complement(1836..2699)
                     /locus_tag="JN125_000773"
     CDS             complement(1836..2699)
                     /locus_tag="JN125_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YicC family protein"
                     /protein_id="HAY8870642.1"
                     /translation="MIRSMTAYARREIKGEWGSATWEMRSVNQRYLETYFRLPEQFRS
                     LEPVVRERIRSRLTRGKVECTLRYEPDISAQGELILNEKLAKQLVTAANWVKMQSDEG
                     EINPVDILRWPGVMAAQEQDLDAIAAEILAALDGTLDDFIVARETEGQALKALIEQRL
                     EGVTAEVVKVRAHMPEILQWQRERLVAKLEDAQVQLENNRLEQELVLLAQRIDVAEEL
                     DRLEAHVKETYNILKKKEAVGRRLDFMMQEFNRESNTLASKSINAEVTNSAIELKVLI
                     EQMREQIQNIE"
     gene            2826..3542
                     /gene="rph"
                     /locus_tag="JN125_000774"
     CDS             2826..3542
                     /gene="rph"
                     /locus_tag="JN125_000774"
                     /EC_number="2.7.7.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006803115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HAY8870643.1"
                     /translation="MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE
                     EGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAV
                     DLKALGEFTITLDCDVLQADGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVA
                     AVSVGIVNGEAVCDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLL
                     ALARGGIESIVATQKAALAN"
     gene            3608..4249
                     /gene="pyrE"
                     /locus_tag="JN125_000775"
     CDS             3608..4249
                     /gene="pyrE"
                     /locus_tag="JN125_000775"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HAY8870644.1"
                     /translation="MKPYQRQFIEFALGKQVLKFGEFTLKSGRKSPYFFNAGLFNTGR
                     DLALLGRFYAEALVDSGLEFDLLFGPAYKGIPIATTTAVALAEHHDLDLPYCFNRKEA
                     KDHGEGGNLVGSALQGRVMLVDDVITAGTAIRESMEIIQANGATLAGVLISLDRQERG
                     RGEISAIQEVERDYNCKVISIITLKDLIAYLEEKPEMAEHLAAVKAYREEFGV"
     gene            complement(4286..4882)
                     /gene="slmA"
                     /locus_tag="JN125_000776"
     CDS             complement(4286..4882)
                     /gene="slmA"
                     /locus_tag="JN125_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000818604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid occlusion factor SlmA"
                     /protein_id="HAY8870645.1"
                     /translation="MAEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVS
                     EAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARLRLIVLLLLGFGERN
                     PGLTRILTGHALMFEQDRLQGRINQLFERIEAQLRQVLREKRMREGEGYTTDETLLAS
                     QILAFCEGMLSRFVRSEFKYRPTDDFDARWPLIAAQLQ"
     gene            complement(4989..5447)
                     /gene="dut"
                     /locus_tag="JN125_000777"
     CDS             complement(4989..5447)
                     /gene="dut"
                     /locus_tag="JN125_000777"
                     /EC_number="3.6.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000976070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HAY8870646.1"
                     /translation="MMKKIDVKILDPRVGKEFPLPTYATSGSAGLDLRACLDDAVELA
                     PGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVW
                     NRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGHSGRQ"
     gene            complement(5425..6645)
                     /gene="coaBC"
                     /locus_tag="JN125_000778"
     CDS             complement(5425..6645)
                     /gene="coaBC"
                     /locus_tag="JN125_000778"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HAY8870647.1"
                     /translation="MSLAGKKIVLGVSGGIAAYKTPELVRRLRDRGADVRVAMTEAAK
                     AFITPLSLQAVSGYPVSDSLLDPAAEAAMGHIELGKWADLVILAPATADLIARVAAGM
                     ANDLVSTICLATPAPVAVLPTMNQQMYRAAATQHNLEGLASRGLLIWGPDSGSQACGD
                     IGPGRMLDPLTIVDMAVAHFSPVNDLKHLNIMITAGPTREPLDPVRYISNHSSGKMGF
                     AIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVMTALEMEAAVNASVQQQNIFIGCAA
                     VADYRAATVAPEKIKKQATQGDELTIKMVKNPDIVAGVAALKDHRPYVVGFAAETNNV
                     EEYARQKRICKNLDLICANDVSQPTQGFNSDNNALHLFWQDGDKVLPLERKELLGQLL
                     LDEIVTRYDEKNRR"
     gene            6817..7485
                     /locus_tag="JN125_000779"
     CDS             6817..7485
                     /locus_tag="JN125_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RadC family protein"
                     /protein_id="HAY8870648.1"
                     /translation="MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTL
                     AKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQLKGIAELARRYYNVRMREESPLL
                     SPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI
                     KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGENVSFAE
                     RGWI"
     gene            7702..7938
                     /gene="rpmB"
                     /locus_tag="JN125_000780"
     CDS             7702..7938
                     /gene="rpmB"
                     /locus_tag="JN125_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008457442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HAY8870649.1"
                     /translation="MSRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEK
                     RFVTLRVSAKGMRVIDKKGIDTVLAELRARGEKY"
     gene            7959..8126
                     /gene="rpmG"
                     /locus_tag="JN125_000781"
     CDS             7959..8126
                     /gene="rpmG"
                     /locus_tag="JN125_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010847629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HAY8870650.1"
                     /translation="MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVR
                     QHVIYKEAKIK"
     gene            8224..9033
                     /gene="mutM"
                     /locus_tag="JN125_000782"
     CDS             8224..9033
                     /gene="mutM"
                     /locus_tag="JN125_000782"
                     /EC_number="3.2.2.23"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-formamidopyrimidine
                     glycosylase/DNA-(apurinic or apyrimidinic site) lyase"
                     /protein_id="HAY8870651.1"
                     /translation="MPELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEEIYRL
                     SDQPVLSVQRRAKYLLLELPEGWIIIHLGMSGSLRILPEELPPEKHDHVDLVMSNGKV
                     LRYTDPRRFGAWLWTKELEGHNVLAHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMD
                     NKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTLK
                     DFLQSDGKPGYFAQELQVYGRKGEPCRVCGTPIVATKHAQRATFYCRQCQK"
     gene            complement(9072..9551)
                     /gene="coaD"
                     /locus_tag="JN125_000783"
     CDS             complement(9072..9551)
                     /gene="coaD"
                     /locus_tag="JN125_000783"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HAY8870652.1"
                     /translation="MQKRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASPSKKP
                     MFTLEERVALAQQATAHLGNVEVVGFSDLMANFARNQHATVLIRGLRAVADFEYEMQL
                     AHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQGDVTHFLPENVHQALMAKLA"
     gene            complement(9559..10836)
                     /gene="waaA"
                     /locus_tag="JN125_000784"
     CDS             complement(9559..10836)
                     /gene="waaA"
                     /locus_tag="JN125_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid transferase"
                     /protein_id="HAY8870653.1"
                     /translation="MLELLYTALLYLIQPLIWIRLWVRGRKAPAYRKRWGERYGFYRH
                     PLKPGGIMLHSVSVGETLAVIPLVRALRHRYPDLPITVTTMTPTGSERVQSAFGKDVQ
                     HVYLPYDLPDALNRFLNKVDPKLVLIMETELWPNLIAALHKRKIPLVIANARLSARSA
                     AGYAKLGKFVRRLLRRITLIAAQNEEDGARFVALGAKNNQVTVTGSLKFDISVTPQLA
                     AKAVTLRRQWAPHRPVWIATSTHEGEESVVIAAHQVLLQQFPNLLLILVPRHPERFPD
                     AINLVRQAGLSYITRSSGEVPSTSTQVVVGDTMGELMLLYGIADLAFVGGSLVERGGH
                     NPLEAAAHAIPVLMGPHTFNFKDICARLEQASGLITVTDATTLAKEVSSLLTDADYRS
                     FYGRHAVEVLYQNQGALQRLLQLLEPYLPPKTH"
     gene            11249..12307
                     /gene="rfaQ"
                     /locus_tag="JN125_000785"
     CDS             11249..12307
                     /gene="rfaQ"
                     /locus_tag="JN125_000785"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide core heptosyltransferase
                     RfaQ"
                     /protein_id="HAY8870654.1"
                     /translation="MDKLFRRILLIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQ
                     DTIPILSENPEINALYGIKNKKAKASEKIANFFHLIKVLRANKYDLIVNLTDQWMVAI
                     LVRLLNARVKISQDYHHRQSAFWRKSFTHLVPLQGGNVVESNLSVLTPLGVDSLVKQT
                     TMSYPPASWKRMRRELDHAGVGQNYVVIQPTARQIFKCWDNAKFSAVIDALHVRGYEV
                     VLTSGPDKDDLACVNEIAQGCQTPPVTALAGKVTFPELGALIDHAQLFIGVDSAPAHI
                     AAAVNTPLISLFGATDHIFWRPWSNNMIQFWAGDYREMPTRDQRDRNEMYLSVIPAAD
                     VIAAVDKLLPSSTTGTSL"
     gene            12304..13428
                     /locus_tag="JN125_000786"
     CDS             12304..13428
                     /locus_tag="JN125_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HAY8870655.1"
                     /translation="MIVAFCLYKYFPFGGLQRDFMRIAQTVAARGHHVRVYTQSWEGE
                     YPDVFELIKVPVKSHTNHGRNAEYFAWVQKHLREHPVDKVVGFNKMPGLDVYYAADVC
                     YAEKVAQEKGFFYHLTSRYRHYAAFERATFEQGKPTQLLMLTDKQIADFQKHYQTEAE
                     RFHILPPGIYPDRKYSQQPANSREIFRKKNGITEQQYLLLQVGSDFTRKGVDRSIEAL
                     ASLPDSLRHNTLLYVVGQDKPRKFEALAEKRGVRSNVHFFSGRNDVSELMAAADLLLH
                     PAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIVDANCGEAIAEPFRQETLNEILRKA
                     LTQSSLRQAWAENARHYADTQDLYSLPEKAADIITGGLDG"
     gene            13421..14218
                     /gene="rfaP"
                     /locus_tag="JN125_000787"
     CDS             13421..14218
                     /gene="rfaP"
                     /locus_tag="JN125_000787"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312532.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide core heptose(I) kinase RfaP"
                     /protein_id="HAY8870656.1"
                     /translation="MVELKEPFATLWRGKDPFEEVKTLQGEVFRELETRRTLRFEMAG
                     KSYFLKWHRGTTLKEIIKNLLSLRMPVLGADREWSAIHRLRDVGVDTMYGVAFGEKGI
                     NPLSRTSFIITEDLTPTISLEDYCADWATNPPDVRVKRMLIKRVATMVRDMHAAGINH
                     RDCYICHFLLHLPFSGKEEELKISVIDLHRAQLRTRVPRRWRDKDLIGLYFSSMNIGL
                     TQRDIWRFMKVYFAAPLKDILKQEQGLLSQAEAKATKIRERTIRKSL"
     gene            14234..15250
                     /gene="waaO"
                     /locus_tag="JN125_000788"
                     /gene_synonym="rfaI"
     CDS             14234..15250
                     /gene="waaO"
                     /locus_tag="JN125_000788"
                     /gene_synonym="rfaI"
                     /EC_number="2.4.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001540083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide
                     3-alpha-galactosyltransferase"
                     /protein_id="HAY8870657.1"
                     /translation="MSAHYFNPQEMINKTIIFDERPAASVASSFHVAYGIDKNFLFGC
                     GVSITSVLLHNNDVSFVFHVFIDDIPEADIQRLAQLAKSYRTCIQIHLVNCERLKALP
                     TTKNWSIAMYFRFVIADYFIDQQDKILYLDADIACQGNLKPLITMDLANNVAAVVTER
                     DANWWSLRGQSLQCNELEKGYFNSGVLLINTLAWAQESVSAKAMSMLADKAIVSRFTY
                     MDQDILNLILLGKVKFIDAKYNTQFSLNYELKKSFVCPINDETVLIHYVGPTKPWHYW
                     AGYPSAQPFIKAKEASPWKNEPLMRPVNSNYARYCAKHNFKQNKPINGIMNYIYYFYL
                     KIIK"
     gene            15267..16262
                     /locus_tag="JN125_000789"
     CDS             15267..16262
                     /locus_tag="JN125_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001001722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide 1,2-glucosyltransferase"
                     /protein_id="HAY8870658.1"
                     /translation="MNEFIKERFSYLADNKKENAPELNVSYGIDKNFLYGAGVSISSV
                     LINNSDINFVFHVFTDYVDDDYLKSFNETAKQFNTSIIVYLIDPKYFADLPTSQFWSY
                     ATYFRVLSFEYLSESISTLLYLDADVVCKGSLKPLTEIIFKDEFAAVIPDNDSTQAAC
                     AKRLNIPEMNGRYFNAGVIYVNLKKWHEANLTPYLLKLLRGETKYGSLKYLDQDALNI
                     AFNMNNIYLAKDFDTIYTLKNELYDRSHRKYQQTITDKTVLIHYTGITKPWHSWAGYP
                     SASYFNIAREQSPWKKYPLKEARTVAEMQKQYKHLFAHGEYIKGITSLIKYKLKK"
     gene            16272..16964
                     /gene="rfaY"
                     /locus_tag="JN125_000790"
     CDS             16272..16964
                     /gene="rfaY"
                     /locus_tag="JN125_000790"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000633080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide core heptose(II) kinase RfaY"
                     /protein_id="HAY8870659.1"
                     /translation="MITSIRYRGFSFYYKDNDNKYKEIFDEILAYNFKTVKVLCNIDD
                     TKVSLIDTKYGRYVFKVFAPKTKRNERFLKSFVKGDYYQNLIVETDRVISAGLTFPND
                     FYFLAGRKIFNYASVFIMLIEYVEGVELNDMPIIPENVKAEIKASMEKLHALNMLSGD
                     PHRGNFIVSKDGVRIIDLSGKSCTAERKARDRLAMERHLGIANEIKDYGYYSVIYRTK
                     LRKFIKKLKGKA"
     gene            16990..18015
                     /locus_tag="JN125_000791"
     CDS             16990..18015
                     /locus_tag="JN125_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000364797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-galactose--(galactosyl) LPS
                     alpha1,2-galactosyltransferase"
                     /protein_id="HAY8870660.1"
                     /translation="MDLLAESITEVAVSGEIANTDRVLNIAYGIDRNFLFGAAVSMQS
                     VVMHNPDLAVKFHLFTDYIDEDYLQRVNAFTSKNANVEVIIYKVSNAFIDIFPSLKQW
                     SYATFFRLVAFQYLSETIENLLYIDADVICKGSLAGLLDINFDEDKFAAVIKDVPFMQ
                     EKPAKRLAIEGLPGNYFNAGVVYLQLEAWAKNDFMNKAIAMLASDPQHTKYKCLDQDI
                     LNILFFGHCNFISGDYDCFYGIDYELKNKSDEDYKKTITDDTKLIHYVGVTKPWNDWT
                     NYPCQKYFNEAYQASCWNDVAFIPATNEKQYQVKYQHAKKNGDTFNAFIYFIKFKLNK
                     YKRKLFG"
     gene            18100..19083
                     /locus_tag="JN125_000792"
     CDS             18100..19083
                     /locus_tag="JN125_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016246416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HAY8870661.1"
                     /translation="MSNDYPLVSIIIPTYNSSDYITETLTKLEKQTYPNFEIVIVNDG
                     SKDNTSNVLREYGLTHSRLIIINKENGGVSSARNTGIRKAQGQFICFMDDDDEIDPNY
                     LLKMYTRQHETGGDAIYCGLYGHYIKDGVTYSPINTEFNEGSLLFDFFYKKVRFHIGC
                     LFIRKQLLEENNLFFDEDLRLGEDLDFIYRLLITCDMYAVPYYMYKHNYRENSLMNSC
                     RTITHYRHESFAHERIYSSVMQLYKGNRKEEIHTLLSQNRAYHKTRYLWNVLLNGDFK
                     LLNQLVESNEKELRDCNLPGKRDKRRAKILASKNYILWRMVRLVNRKKNKR"
     gene            19129..20382
                     /locus_tag="JN125_000793"
     CDS             19129..20382
                     /locus_tag="JN125_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012602581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen ligase family protein"
                     /protein_id="HAY8870662.1"
                     /translation="MSFCWNEINSGIKSLILILCIFSLMTLSLWDDVATKFLHAAGII
                     SALYFLATPKKTITNNPTLLIFISLCLLGIVNIIWYSHYKVSGSVYTNAYRGPMETGK
                     IALCSAFIFLVLFAKNEMRTKIKFGKLILFASLATQLLFFAHAMWQHFYLNVDRVALS
                     ASHATTAGYIILFPSLLASILILKSDFRHKTTLYTINFMLSLCAVIVTETRAAILVFP
                     FFALILIVMDSYINKRINYKLYCFIAIALLAGVFSFKDTLLMRMNDLNNDLVNYSHDN
                     TRTSVGARLAMYEVGLKTYSPIGQSLEKRAEKIHELEEKEPRLSGALPFVDSHLHNDL
                     IDTLSTRGIPGVVLTILAFSAILIYALRTAKEPYILILLFSLLVVGLSDVILFSKPVP
                     TAVFVTIILLCAYFKAQSDQYLLDK"
     gene            complement(20452..21432)
                     /gene="rfaC"
                     /locus_tag="JN125_000794"
     CDS             complement(20452..21432)
                     /gene="rfaC"
                     /locus_tag="JN125_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016244006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase RfaC"
                     /protein_id="HAY8870663.1"
                     /translation="MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQI
                     PSWHAAVERVIPVAIRRWRKAWFSAPIKAERKAFREALQAENYDAVIDAQGLVKSAAL
                     VTRLAHGVKHGLDWQTAREPLASLFYNCKHHIAKQQHAVERTRELFAKSLGYSKPQTQ
                     GDYAIAQHFLTNLPTDAGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWG
                     APHEEERAKRLAEGFDYVEVLPKMSLEGVARVLAGAKFVVSVDTGLSHLTAALDRPNI
                     TVYGPTDPGLIGGYGKNQMVCRAPGNELSQLTANAVKRFIEENAENAAMI"
     gene            complement(21436..22482)
                     /gene="rfaF"
                     /locus_tag="JN125_000795"
     CDS             complement(21436..22482)
                     /gene="rfaF"
                     /locus_tag="JN125_000795"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-heptose--LPS heptosyltransferase RfaF"
                     /protein_id="HAY8870664.1"
                     /translation="MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPL
                     LSRMPEVNEAIPMPLGHGALEIGERRKLGHSLREKRYDRAYVLPNSFKSALVPFFAGI
                     PHRTGWRGEMRYGLLNDVRVLDKEAWPLMVERYVALAYDKGIMRTAQDLPQPLLWPQL
                     QVSEGEKSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVL
                     FGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDSGLMHVA
                     AALNRPLVALYGPSSPDFTPPLSHKARVIRLITGYHKVRKGDAAEGYHQSLIDITPQR
                     VLEELNTLLLQEEA"
     gene            complement(22492..23424)
                     /gene="rfaD"
                     /locus_tag="JN125_000796"
     CDS             complement(22492..23424)
                     /gene="rfaD"
                     /locus_tag="JN125_000796"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HAY8870665.1"
                     /translation="MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVD
                     LDIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLH
                     YCLEREIPFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANS
                     QIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVA
                     DVNLWFLENGVSGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFT
                     QADLTNLRAAGYDKPFKTVAEGVTEYMAWLNRDA"
     gene            23638..24834
                     /gene="kbl"
                     /locus_tag="JN125_000797"
     CDS             23638..24834
                     /gene="kbl"
                     /locus_tag="JN125_000797"
                     /EC_number="2.3.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020239151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine C-acetyltransferase"
                     /protein_id="HAY8870666.1"
                     /translation="MRGEFYQQLTNDLETARAEGLFKEERIITSAQQADITVADGSHV
                     INFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGM
                     EDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQE
                     LEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFV
                     GENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNS
                     LAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFTLAGADHAIIPVILGD
                     AVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGK
                     QLGVIA"
     gene            24844..25869
                     /gene="tdh"
                     /locus_tag="JN125_000798"
     CDS             24844..25869
                     /gene="tdh"
                     /locus_tag="JN125_000798"
                     /EC_number="1.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonine 3-dehydrogenase"
                     /protein_id="HAY8870667.1"
                     /translation="MKALSKLKAEEGIWMTDVPVPELGHNDLLIKIRKTAICGTDVHI
                     YNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGG
                     RTHLCRNTIGVGVNRPGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSF
                     DLVGEDVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKMGITRAVNVAKE
                     NLNDVMAELGMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKV
                     IFKGLFIKGIYGREMFETWYKMAALIQSGLDLSPIITHRFSIDDFQKGFDAMRSGQSG
                     KVILSWD"
     gene            26108..27142
                     /gene="waaH"
                     /locus_tag="JN125_000799"
     CDS             26108..27142
                     /gene="waaH"
                     /locus_tag="JN125_000799"
                     /EC_number="2.4.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucuronate:LPS(HepIII) glycosyltransferase"
                     /protein_id="HAY8870668.1"
                     /translation="MMNSTNKLSVIIPLYNAGDDFRTCMESLITQTWTALEIIIINDG
                     STDNSVEIAKHYAENYPHVRLLHQANAGASVARNRGIEVATGKYVAFVDADDEVYPTM
                     YETLMTMALEDDLDVAQCNADWSFRETGETWQSIPSDRLRSTGVLTGPDWLRMGLSSR
                     RWTHVVWMGVYRRDVIVKNNIKFIAGLHHQDIVWTTEFMFNALRARYTEQSLYKYYLH
                     NTSVSRLHRQGNKNLNYQRHYIKITRLLEKLNRNYADKITIYPEFHQQITYEALRVCH
                     AVRKEPDILTRQRMIAEIFTSGMYKRLITNVRSVKVGYQALLWSFRLWQWRDKTRSHH
                     RITRSAFNLR"
     gene            complement(27129..28088)
                     /locus_tag="JN125_000800"
     CDS             complement(27129..28088)
                     /locus_tag="JN125_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312519.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HAY8870669.1"
                     /translation="MFPFRRNVLAFAALLALSSPVLAGKLAIVIDDFGYRPHNENQVL
                     AMPSAISVAVLPDSPHAREMATKAHNSGHEVLIHLPMAPLSKQPLEKNTLRPEMSSDE
                     IERIIRSAVNNVPYAVGINNHMGSKMTSNLFGMQKVMQALERYNLYFLDSVTIGNTQA
                     MRAAQGTGVKVIKRKVFLDDSQNEADIRVQFNRAIDLARRNGSTIAIGHPHPLTVRVL
                     QQMVYNLPPDITLVKASSLLNEPQVDTSTPPKNAVPDAPRNPFRGVKLCKPKKPIEPV
                     YANRFFEVLSESISQSTLIVYFQHQWQGWGKQPEAAKFNASAN"
     gene            complement(28092..29375)
                     /gene="envC"
                     /locus_tag="JN125_000801"
     CDS             complement(28092..29375)
                     /gene="envC"
                     /locus_tag="JN125_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein hydrolase activator EnvC"
                     /protein_id="HAY8870670.1"
                     /translation="MRGKAINTMTRAVKPRRFAIRPIIYASVLSAGVLLCAFSAHADE
                     RDQLKSIQADIAAKERAVRQKQQQRASLLAQLKKQEEAISEATRKLRETQNTLNQLNK
                     QIDEMNASIAKLEQQKAAQERSLAAQLDAAFRQGEHTGIQLILSGEESQCGQRLQAYF
                     GYLNQARQETIAQLKQTREEVAMQRAELEEKQSEQQTLLYEQRAQQAKLTQALNERKK
                     TLAGLESSIQQGQQQLSELRANESRLRNSIARAEAAAKARAEREAREAQAVRDRQKEA
                     TRKGTTYKPTESEKSLMSRTGGLGAPRGQAFWPVRGPTLHRYGEQLQGELRWKGMVIG
                     ASEGTEVKAIADGRVILADWLQGYGLVVVVEHGKGDMSLYGYNQSALVSVGSQVRAGQ
                     PIALVGSSGGQGRPSLYFEIRRQGQAVNPQPWLGR"
     gene            complement(29385..30929)
                     /gene="gpmM"
                     /locus_tag="JN125_000802"
                     /gene_synonym="pgmI"
     CDS             complement(29385..30929)
                     /gene="gpmM"
                     /locus_tag="JN125_000802"
                     /gene_synonym="pgmI"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HAY8870671.1"
                     /translation="MSVSKKPMVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPH
                     TLIDASGLEVGLPDRQMGNSEVGHVNLGAGRIVYQDLTRLDVEIKDRAFFANPVLTGA
                     VDKAKNAGKAVHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPR
                     SAESSLKKFEEKFAALGKGRVASIIGRYYAMDRDNRWDRVEKAYDLLTLAQGEFQADT
                     AVAGLQAAYARDENDEFVKATVIRAEGQPDAAMEDGDALIFMNFRADRAREITRAFVN
                     ADFDGFARKKVVNVDFVMLTEYAADIKTAVAYPPASLVNTFGEWMAKNDKTQLRISET
                     EKYAHVTFFFNGGVEESFKGEDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKY
                     DTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQ
                     MRDPATGQAHTAHTNLPVPLIYVGDKNVKAVAGGKLSDIAPTMLSLMGMEIPQEMTGK
                     PLFIVE"
     gene            31174..31605
                     /locus_tag="JN125_000803"
     CDS             31174..31605
                     /locus_tag="JN125_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HAY8870672.1"
                     /translation="MQEIMQFVGRHPILSIAWIALLVAVLVTTFKSLTSKVKVITRGE
                     ATRLINKEDAVVVDLRQRDDFRKGHIAGSINLLPSEIKANNVGELEKHKDKPVIVVDG
                     SGMQCQEPANALTKAGFAQVFVLKEGVAGWAGENLPLVRGK"
     gene            31747..31998
                     /gene="grxC"
                     /locus_tag="JN125_000804"
     CDS             31747..31998
                     /gene="grxC"
                     /locus_tag="JN125_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 3"
                     /protein_id="HAY8870673.1"
                     /translation="MANVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEM
                     IKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLK"
     gene            32061..32528
                     /gene="secB"
                     /locus_tag="JN125_000805"
     CDS             32061..32528
                     /gene="secB"
                     /locus_tag="JN125_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-export chaperone SecB"
                     /protein_id="HAY8870674.1"
                     /translation="MSEQNNTEMTFQIQRIYTKDISFEAPNAPHVFQKDWQPEVKLDL
                     DTASSQLADDVYEVVLRVTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYC
                     PNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQQQAGEGTEEHQDA"
     gene            32528..33547
                     /gene="gpsA"
                     /locus_tag="JN125_000806"
     CDS             32528..33547
                     /gene="gpsA"
                     /locus_tag="JN125_000806"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HAY8870675.1"
                     /translation="MNQRNASMTVIGAGSYGTALAITLARNGHEVVLWGHDPEHIATL
                     ERDRCNAAFLPDVPFPDTLHLESDLATALAASRNILVVVPSHVFGEVLRQIKPLMRPD
                     ARLVWATKGLEAETGRLLQDVAREALGDQIPLAVISGPTFAKELAAGLPTAISLASTD
                     QTFADDLQQLLHCGKSFRVYSNPDFIGVQLGGAVKNVIAIGAGMSDGIGFGANARTAL
                     ITRGLAEMSRLGAALGAEPATFMGMAGLGDLVLTCTDNQSRNRRFGMMLGQGMDVQSA
                     QEKIGQVVEGYRNTKEVRELAHRFGVEMPITEEIYQVLYCGKNAREAALTLLGRARKD
                     ERSSH"
     gene            33627..34448
                     /gene="cysE"
                     /locus_tag="JN125_000807"
     CDS             33627..34448
                     /gene="cysE"
                     /locus_tag="JN125_000807"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001112113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HAY8870676.1"
                     /translation="MSCEELEIVWNNIKAEARTLADCEPMLASFYHATLLKHENLGSA
                     LSYMLANKLSSPIMPAIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPL
                     LYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHAT
                     GIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGA
                     KIGAGSVVLQPVPPHTTAAGVPARIVGKPDSDKPSMDMDQHFNGINHTFEYGDGI"
     gene            complement(34501..34974)
                     /gene="trmL"
                     /locus_tag="JN125_000808"
     CDS             complement(34501..34974)
                     /gene="trmL"
                     /locus_tag="JN125_000808"
                     /EC_number="2.1.1.-"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HAY8870677.1"
                     /translation="MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRL
                     RRAGLDYHEFTAVTRHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPE
                     TRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQLGYPGALLRD"
BASE COUNT         8793 a         8322 c         8747 g         9244 t
ORIGIN      
        1 agcacatggc aatctatatg atttacaacg cctgccttaa agcttttttc gtcctctact
       61 tcagtgatta tgtcggcaag taataagcag tcttctttga cgtctgggaa taaagagcaa
      121 ttgcggtaaa gactcgcgat gctatgtaat gtgccgtcgt agccgcaaag gtacgcgctc
      181 aaatatatag attctgccgc cgccataatc aaaagatcat caatatctat ttctaataat
      241 tcggctgctc tgttaagcct gaaaaaaggg gcgggtggta attttttcat tgcgtcacct
      301 tttacgctgc gccttatttt gtgattgagc caggcggtaa ggcttcccgc ttttcgcccc
      361 gtcgagctag gctcaatcta ttcagttagt tcgcccttct gagaggcgtt acgttgtagt
      421 cttttccgct ttccagtgcc actagcagat cagcccactg tgccagtgct gctttacgct
      481 catcaaaata ctgatggcgg ttataaatcc cctctacgcc cttaatgcga tgattgaggc
      541 atcgttccgc cacaacagga tcaacaccca acgctgctaa atgagtacgt gcggtgcgtc
      601 gaaagtcgtg aatcgtgaaa ttaggcacat ccggcatttc ggcgcgaacc ttagccagtg
      661 ctacgggtaa agtgctttcc tgaatatgtg ggatcattct gttttgcatc ttcctggccg
      721 gaagcaccca tgcgctatta catgaaaagg tgtgtagctc tctcaaccat tcaacggctg
      781 gggaaggtag aggtatatca atagggtctc cgtttttgct gcgttcttcc ggcaaatgcc
      841 ataccgcacc atctaaatca aactcttccc atcgtgcggc gcataattcc attttgcgga
      901 cgcataacgc taacagtaat ttgaacgtga tttcgttctg gcgactgaat cccttagccg
      961 tgcgcatggc tttgaatagc tggattaact catcgcgggt taaccagcgg tcacgggcag
     1021 cttctttccc tccggcgtct gccacctcaa aggctgaaca ggggttaatc tctagcgcgt
     1081 gccgtttgat tccgtagtcg aatatgcggc gcgtccatct cagcacgtcc gttgctatgg
     1141 tcggcgctcc acggtcaaca atacctttca gcatgtcatc gatatggcgc ggtttcacgt
     1201 cctctacctt catgctgcca atgcaggggt ttatatcttt gtcgatacgg cggcggagta
     1261 tatcggggtg cttccagcgc gggaggatct gacgctcaaa gtattcagcg gcaagctctg
     1321 aaacgcgcat agcgttcttc tctgcttcca tcttcgccag tgcttcggtt ttgtgcttct
     1381 gcttctctcc tgcaacgtca tagcccagcg caacgcgagc cgatagctct ttggctgtct
     1441 ctctggcctt tgatagtgat agctcgctat acgaaccaat tagcatggcg cgggacttcc
     1501 ctgcgagttt atagcggaat ctccatgtgg gggttttgtc ggcttcacgg taacgtaggt
     1561 ataaaccgtt accgtctgcc cgcccctcga atcgctctcc gctcttaatc catgcgcgga
     1621 tctgcatgtc tgttagtttt ggcattttgc gaatatccaa actttgaata gggggtgtac
     1681 ccaaagcaat gtacccaaac ctcattgggt acacctttgt gtacaccata atcatgcgct
     1741 ttgttgcgtc tttatgatag cccatgataa caaaaaagcc cgctgggttg cgggcttggt
     1801 gtgatttatg cgtcgtccta aatgttgctg atagcttact cgatattctg aatctgctcg
     1861 cgcatctgct caatcaacac tttcagctca atcgcggagt ttgtcacttc ggcattgata
     1921 gacttcgacg caagagtgtt cgactcgcgg ttgaattcct gcatcataaa gtccagacga
     1981 cgaccaacgg cttctttttt cttcagaatg ttgtaggtct ctttgacatg cgcttccagg
     2041 cggtccagtt cttcggcaac gtcaattcgt tgtgccagca gaaccagctc ctgctccaga
     2101 cggttgtttt ccaactgaac ctgagcatct tccagcttcg cgaccagacg ctcacgctgc
     2161 cattgcagga tttccggcat atgggcgcgg actttgacca cttcggcggt gacgccttcc
     2221 agacgctgct cgatcaatgc tttcagtgcc tgaccttcgg tttcgcgcgc gacaataaag
     2281 tcgtccagcg taccatccag cgccgcgaga atttcagcgg caatggcgtc aagatcctgc
     2341 tcctgggctg ccatcacgcc cggccagcgt agaatatcaa ccgggttgat ttccccttcg
     2401 tcactctgca tttttaccca gttcgcggca gttaccagct gtttagccag tttttcgttg
     2461 aggatcagct caccttgcgc gctaatatct ggctcatagc gcagggtaca ttccacttta
     2521 ccgcgcgtca ggcgagaacg aatacgctcg cgaacgacag gttcaaggct acggaactgc
     2581 tccggcagac gaaagtaagt ttccagataa cgctggttta ccgagcgcat ttcccaggtt
     2641 gcgctccccc attcaccctt gatttcacgc cgggcgtagg cggtcatact gcggatcata
     2701 gacgttcctg tttataaaag gagaggtgga aggattatag ccatcgatgc cttgtcagga
     2761 taggaataac cgccggaagt ccgtataatg cgcagccaca tttgtttcaa gccggagatt
     2821 tcaatatgcg tccagcaggc cgtagcaata atcaggtgcg tcccgttacc ctgactcgta
     2881 actatacaaa acatgcagaa ggctcggtgc tggtcgaatt tggcgatacc aaagtgttgt
     2941 gtaccgcctc tattgaagaa ggcgtgccgc gcttcctgaa aggtcagggc cagggctgga
     3001 tcaccgcaga gtacggcatg ctgccacgtt ctacccacac ccgtaacgct cgtgaagcgg
     3061 cgaaaggtaa gcagggtgga cgcacaatgg aaatccagcg tctgatcgcc cgtgctcttc
     3121 gcgcggcagt agatttgaaa gcgctgggtg agttcaccat tacgctggac tgcgacgtgc
     3181 ttcaggctga tggtggcacg cgtaccgcgt cgattacggg tgcctgcgtg gcgctggcag
     3241 atgcgctaca gaagctggtg gaaaacggca agctgaaaac caacccgatg aaagggatgg
     3301 tagccgcagt ttctgtcgga attgtgaacg gcgaagcggt ttgcgatctg gaatacgttg
     3361 aagactctgc cgcagagacc gacatgaacg tagtgatgac cgaagacggg cgcatcattg
     3421 aagtgcaggg gacggcagaa ggcgagccgt tcacccatga agagctactc accttgttgg
     3481 ctctggcccg agggggaatc gaatccattg tagcgacgca gaaggcggcg ctggcaaact
     3541 gatttttaag gcgactgatg agtcgccttt tttttgtctg tagaaaagta agatgaggag
     3601 cgaaggcatg aaaccatatc agcgccagtt tattgaattt gcgcttggca agcaggtgtt
     3661 aaagtttggc gagtttacgt tgaagtccgg gcgcaaaagc ccctatttct tcaacgccgg
     3721 gctgtttaat accgggcgcg atctggcact gttaggccgt ttttacgctg aagcgttggt
     3781 ggattccggc cttgagttcg atctgctgtt tggccctgct tacaaaggga tcccgattgc
     3841 caccactacc gccgtggcgc tggcggagca tcatgacctt gacctgccgt actgctttaa
     3901 ccgcaaagag gcaaaagacc acggtgaagg cggcaatctg gttggtagcg cgttacaagg
     3961 acgcgtaatg ctggtagatg atgtgatcac cgccggaacg gcgattcgcg aatcgatgga
     4021 gattattcag gctaatggcg cgacgcttgc tggcgtgttg atttcgcttg atcgtcagga
     4081 acgggggcgc ggcgagattt cggcgattca ggaagttgag cgtgattaca actgcaaagt
     4141 gatctctatc atcaccctga aagacctgat tgcttacctg gaagagaagc cggaaatggc
     4201 ggaacatctg gcggcggtta aggcctatcg cgaagagttt ggcgtttaaa gaaactcgcc
     4261 ggatgaaaag tcatccggcg tcatattact gcaactgtgc cgcaattagc ggccagcggg
     4321 cgtcaaaatc atccgtcggg cggtatttaa attcgctgcg gacaaaacgt gacagcatac
     4381 cttcacagaa ggccaggatc tggcttgcca gcagggtttc atcggtggtg taaccttcac
     4441 cctcacgcat tctcttttca cgcaatacct gacgcagctg cgcttcaata cgctcgaaca
     4501 gctggttgat gcgcccttgc aggcgatcct gttcaaacat tagcgcatga ccagtgagga
     4561 tgcgggtcag gccaggatta cgctcaccaa aaccgagaag cagcaacaca atcagacgca
     4621 ggcgcgctgt ggtgtctttc tcatctttca gaatcaggtt gatgcgagta atcaggctat
     4681 cttcgataaa ctcaatcagg ctatcgaaca tgcgggtctt actggggaag tggcgataca
     4741 gtgccgcttc ggaaacgccg acagaggcgg ccagttttgc cgtcgtgata cgttggcttc
     4801 catcgctgga ttccagcatc agcgccagag actgaagtat ttcctcgcga cggttccttt
     4861 tcgcagtttg tttttctgcc atgttacaaa atacccctga aaataagcac ttgccaggcg
     4921 gcacccacgc tatgaccgca aacgaaatgt ttgcggctat gttatgacgt tattcggatg
     4981 cgtatgtgtt actgacgacc agagtgacca aagccgcctt caccgcggtc ggtggcgtcg
     5041 aaatcttcca ccagattaaa ttcagcctgt actaccggaa caaaaatcat ctgggcgatg
     5101 cgttcgccag gttgaatggt gaagctgtcc tgaccacggt tccacacgga aatcatcaac
     5161 tggccctgat agtcggaatc gatcaatcct accaggttac caagcacgat accgtgctta
     5221 tgtcccaatc cggagcgcgg cagcatcatt gccgccagtg aaggatcggc aatatgaatc
     5281 gccagcccgg tcggaaccag cgtagtgtca cccggagcca gttctacggc gtcgtcgaga
     5341 caggcacgca ggtcaagtcc ggcagagcca gaggtggcat aagtcgggag cggaaattcc
     5401 ttcccaacgc gcgggtccag aatcttaacg tcgatttttt tcatcataac gggtcacgat
     5461 ctcgtcgagt aatagttggc caaggagctc tttgcgctca agcggtaaga ctttatctcc
     5521 gtcctgccag aaaaggtgta atgcgttgtt gtcgctgtta aatccttgag ttggctggga
     5581 aacatcgttc gcgcagatca gatcaaggtt tttacagata cgtttttgcc gggcgtattc
     5641 ttccacatta tttgtttcgg cggcaaatcc aacgacgtag ggtcgatggt cttttagtgc
     5701 ggcaacgcct gcgacgatat cggggttttt aaccattttt attgttaatt catcaccctg
     5761 cgtggcctgc tttttgattt tttctggggc cacggtagct gcgcgataat ccgccacggc
     5821 ggcgcagccg ataaaaatat tttgctgctg tacagaagca ttcacggcgg cttccatttc
     5881 cagcgcggtc atcacatcaa cacgtttaac aaacggtggc gtcggtagtg aaaccggacc
     5941 tgataccagc gtgacgttcg cgccacgacg ggcagcggcg gcggcgatag caaaacccat
     6001 cttgccggag ctgtgattag agatataacg cacgggatcg agcggttcac gcgtcggacc
     6061 ggcggtaatc ataatgttca gatgtttcag gtcgttgacg ggcgaaaaat gcgccaccgc
     6121 catatccaca atggttaacg gatcgagcat tcgcccagga ccgatatcac cacaagcctg
     6181 actgccactg tctggccccc agatgagcaa accacgggaa gcaagcccct ctaaattatg
     6241 ctgcgtggca gcggcacggt acatctgctg gttcatggtg gggagcacgg ctacaggcgc
     6301 aggtgtagcc agacaaatcg tcgataccag gtcattcgcc attccggcag caacacgggc
     6361 aatcaaatct gccgtggcag gggcgagaat cactaaatca gcccatttac ccagctcaat
     6421 atggcccata gcggcttcgg ctgccgggtc cagcaaactg tcggaaacgg gataaccaga
     6481 aaccgcctgc aagctaagtg gggtgataaa ggcttttgcc gcttcggtca tggctacgcg
     6541 gacgtcggcc ccgcgatcgc gcaaacgacg caccagttca ggggttttat aggcagcaat
     6601 accgccgcta acgccgagaa cgattttttt accggccagg ctcatgatga tttttcctgt
     6661 tgggtgacac cagaagttgg cgattttatc acaatacttt tgttgtcgtg ccttcacctg
     6721 agaatcactt tgcgaggcgc tttccaggat tgaaaactgg ccgtcgattt aacggaacgg
     6781 ctatgacagg atgcgagcac cacaaaggag gtgaaggtga aaaacaattc acagctgttg
     6841 atgccgcgcg aaaaaatgct gaagtttggt attagcgcct taacggatgt cgagctgctg
     6901 gcgctatttc tgcgtaccgg aacgcgcggt aaagatgtat taaccctggc aaaagagatg
     6961 ctggagaatt tcggctctct ttatggcttg ttaacctctg aatatgaaca atttagtggc
     7021 gttcatggaa ttggcgtggc gaaatttgcc cagttaaagg ggattgctga actggcgcgg
     7081 cgttactaca acgtgcggat gcgtgaagaa agccctttac tcagcccgga gatgacgcgg
     7141 gaatttttac aaagccagct tacgggtgag gagcgggaga tctttatggt gatctttctc
     7201 gactcacaac accgggttat aacgcatagc cgtctttttt ccggcacgct aaaccatgtt
     7261 gaagtccatc ctcgggaaat tatccgcgaa gcgataaaaa taaacgcctc ggcgctgatc
     7321 cttgcacata atcacccttc gggttgtgct gaacccagta aagcggataa actcattact
     7381 gaacggataa taaagagttg tcagttcatg gatttacgcg tgctcgacca tatcgtgatt
     7441 gggcgtggag agaatgtttc ttttgccgaa cgcggctgga tttaacccgc tatgcgcgat
     7501 ccttcgggat ctttgtctgt tcgggacttg agcacatcgc tgagtcagcg tatactacgc
     7561 cacctttgag aatctcgggt ttggcatttg ggcctggcaa tcgagagttc acatagaact
     7621 gcgatgactg ggctgtaaag cctgacgagg cgccaatacc ccatacgaag ctcgagctaa
     7681 tttgattttt ggagaataga catgtcccga gtctgccaag ttactggcaa gcgtccggtg
     7741 accggtaaca accgttccca cgcactgaac gcgactaaac gccgtttcct gccgaacctg
     7801 cactctcacc gtttctgggt tgagagcgag aagcgttttg tcaccctgcg cgtatctgct
     7861 aaaggtatgc gtgtaatcga taaaaaaggc atcgatacag ttctggctga actgcgtgcc
     7921 cgtggcgaaa agtactaagt acttagagga aataaatcat ggctaaaggt attcgtgaga
     7981 aaatcaagct ggtttcttct gctggtactg gtcacttcta taccactacg aagaacaaac
     8041 gtactaagcc ggaaaaactg gaactgaaaa aattcgatcc agttgttcgc cagcacgtga
     8101 tctacaaaga agcgaaaatc aaataattct cgctttgatg taacaaaaaa cctcgctccg
     8161 gcggggtttt ttgttatctg cttgccccca tattgactgc atctgttcat tcctggagat
     8221 gctatgcctg aattacccga agttgaaacc agccgccgcg gcatagaacc gcatctcgtt
     8281 ggtgcaacca ttcttcatgc agtggtgcgc aacggacgct tgcgctggcc ggtttcagaa
     8341 gagatctacc gtttaagcga ccaaccagtg cttagcgtgc agcggcgggc taaatatctg
     8401 ctgctggagc tgcctgaggg ctggattatc attcatttag ggatgtctgg cagcctgcgc
     8461 atccttccag aagaacttcc ccctgaaaag catgaccatg tggatttggt gatgagcaac
     8521 ggcaaagtgc tgcgctacac cgatccgcgc cgctttggtg cctggctgtg gaccaaagag
     8581 ctggaagggc ataatgtgct ggcccatctt ggaccggagc cgcttagcga cgatttcaat
     8641 ggtgagtatc tgcatcagaa gtgcgcgaag aaaaaaacgg cgattaaacc gtggctgatg
     8701 gataacaagc tggtggtagg ggtagggaat atctatgcca gcgaatcact gtttgcggcg
     8761 gggatccatc cggatcggct ggcgtcatca ctgtcgctgg cagagtgtga attgttagct
     8821 cgggtgatta aagcggtgtt gctgcgttcg attgagcagg gtggtacaac gctgaaagat
     8881 tttctgcaaa gtgatggtaa accgggctat ttcgctcagg aattgcaggt ttacgggcga
     8941 aaaggtgagc cgtgtcgggt gtgcggtacg ccgattgtgg cgactaaaca tgcgcagcgg
     9001 gcaacgtttt attgtcggca gtgccagaag taattcatgc gcgccggatc gcataccatc
     9061 cggcataaac gctacgctaa cttcgccatc agcgcctgat ggacattctc cggcaggaaa
     9121 tgggtgacat cgccctgatg gcgcgccacc tctttcacca acgatgaaga gataaacgac
     9181 cactctttcg acggcatcag aaacacactt tccagttccg gcattaagtg gcgattcata
     9241 tgcgccagct gcatttcata ttcaaaatcc gccaccgcac gcaggccacg aatcagcacc
     9301 gtagcgtgtt gattacgggc gaagttcgcc atcaaatcac taaacccaac tacttccacg
     9361 ttccccagat gcgcggttgc ctgctgtgcc agcgccacac gctcttccag ggtaaacatc
     9421 ggttttttac tggggctggc ggcaatcgcc agaataacgt gatcgaacat ttgcgtggcg
     9481 cgcgtcacga tatcgatatg accattggta atgggatcga aagtacccgg ataaatcgcc
     9541 cgtttttgca taacaacctc aatgcgtttt cggtggcagg taaggttcca gcagttgaag
     9601 caggcgctgt agcgcgccct ggttttgata cagtacttca acggcatgac ggccatagaa
     9661 actacggtaa tcggcgtcgg tgagtaaaga ggaaacctct tttgcaagcg tagtggcatc
     9721 ggtaacggta atcagcccgc ttgcctgctc cagccgcgcg caaatgtctt taaaattaaa
     9781 agtatgcggc cccatcaata ccggaatagc gtgtgcggca gcttccagcg gattatgccc
     9841 accacgttca accagtgaac cgccaacaaa ggcgagatcg gcaatgccgt acagtaacat
     9901 caactcgccc atcgtatcgc caaccacaac ctgcgtgctg gtggagggga cttcccctga
     9961 agagcgtgtg atatagctta gtccagcctg gcggacaagg ttaatcgcat ccgggaagcg
    10021 ttctggatga cggggtacca ggatgagcaa taaattcggg aattgctgta acaatacctg
    10081 atgtgcggcg atcaccacac tctcttcacc ttcgtgagtg ctggtggcaa tccataccgg
    10141 gcggtgtggt gcccactggc ggcgcagcgt cacggcttta gcagccaact gcggcgttac
    10201 agaaatatcg aatttcaggc taccggtaac ggttacctgg ttattttttg cgcccagcgc
    10261 cacaaaacgt gcaccatctt cttcattttg ggcggcaatc agcgtaatac gacgcagcaa
    10321 gcgacggacg aatttaccca gtttggcata acctgcggcc gagcgggcag agagtcgcgc
    10381 gttcgcgatc accagcggaa ttttacgttt atgtagcgcc gcaatcaggt taggccatag
    10441 ttcggtttcc ataatcaaca ccagtttagg gtcgacttta ttcaggaaac gattaagtgc
    10501 atcgggcagg tcatacggca gataaacgtg ctgaacatcc ttcccgaaag ccgattgtac
    10561 gcgctccgaa ccggttggcg tcatggttgt aacggtaatc ggtaaatcag gataacgatg
    10621 acgcagcgcg cgcaccaacg ggatcaccgc cagagtttca ccgacggaga cggagtgcag
    10681 cataatgccg cctggtttta gcggatggcg gtaaaaaccg taacgttcac cccagcgttt
    10741 tcgataggcc ggagccttac gtccgcgcac ccagagccgt atccagatca gcggctgaat
    10801 aaggtagaga agggcggtgt aaagcaattc gagcatagta aatagctgac ttatggatgt
    10861 gctggggatt ctatgtattt agctgtggct ttaccattac ttttcccgtt tttgacttaa
    10921 atagcaattt acccgccaat tcttgctgaa catctatact ttttttgtat ttttatgcga
    10981 ttcattgatt tctgctgtac gtgcaggaag gaatcgcaga gcaacagtga aagaatatgg
    11041 ttgctaatga ttttatttga ttgatttctt tattgaaaat caacaatgtg cttaaaaatc
    11101 attcgggtcg gattgccgcg aaagaagtga tacactagcg cgtcaatatc agtgcggtat
    11161 cagtattcag gtagctgttg agcctggggc ggtagcgtgc tttttctgct tcaccttaat
    11221 cggataatct caacaaaaag agttacttgt ggataagcta tttcgaagaa ttttgctcat
    11281 taagatgcgt tttcatgggg atatgttatt aactactccc gtcattagtt cgctgaaaaa
    11341 aaattaccct gacgcaaaaa tcgatgtgct gctttatcag gacaccatcc cgatcctgtc
    11401 tgaaaatcca gagattaacg cgctctacgg cataaaaaat aaaaaagcaa aagcctcaga
    11461 aaaaattgcc aacttttttc atctcatcaa ggtattacgt gccaataagt atgaccttat
    11521 cgtcaatctc accgatcaat ggatggttgc tatactggtt cgcttattaa atgcccgtgt
    11581 gaaaatttcc caggattatc atcatcggca gtctgctttt tggcgtaaaa gtttcaccca
    11641 tttggtgccg ttgcagggtg gaaatgtggt ggaaagtaac ttatccgtgc tgaccccatt
    11701 gggagttgat tcgttggtga agcagacaac catgagttac ccgcctgcaa gctggaaacg
    11761 tatgcgtcgc gaacttgatc acgctggtgt tggacaaaat tatgtggtta tccaacctac
    11821 ggcgcggcaa atcttcaaat gctgggacaa cgccaagttt tccgctgtga ttgatgcctt
    11881 acatgttcgt ggttatgaag ttgttctgac gtccggccca gataaagacg atctggcctg
    11941 cgtcaatgaa attgcgcagg gatgccagac gccaccagta acggcgctgg ctggaaaggt
    12001 gaccttcccg gaacttggtg cgttaatcga tcatgcgcag ctgtttattg gcgttgattc
    12061 cgcaccggcg catattgccg ctgcagttaa tacgccgctg atatcgctgt ttggtgcgac
    12121 agaccatatt ttctggcgtc cctggtcaaa taacatgatt caattctggg cgggagatta
    12181 ccgggaaatg ccaacgcgcg atcagcgtga ccgaaatgag atgtatcttt cggttattcc
    12241 ggcggcagat gtcattgctg ctgtcgataa attactgccc tcctccacga caggtacgtc
    12301 gttatgatcg ttgctttttg tttatataaa tattttccct ttggcggttt gcagcgcgat
    12361 tttatgcgta ttgctcagac agtcgccgcc cgaggtcatc atgttcgggt ttatacccag
    12421 tcgtgggaag gcgaataccc tgatgtattt gaactgatca aagtgccggt taaatcgcat
    12481 accaatcacg ggcgcaatgc ggagtatttt gcctgggtgc aaaaacattt acgcgaacat
    12541 cccgtcgata aagtcgttgg attcaacaaa atgccggggc tggacgttta ttatgccgct
    12601 gatgtttgtt atgccgagaa agtcgcgcag gaaaaaggct ttttctatca cctgacgtca
    12661 cgttatcgcc attatgccgc ctttgagcgg gcaaccttcg aacagggaaa gccgacacag
    12721 ctgctgatgc tgacagataa gcaaatcgcc gatttccaga aacattatca gactgaagcg
    12781 gagcgttttc atattctgcc accggggatt tatcctgatc gtaaatatag ccagcagcca
    12841 gctaatagcc gtgaaatctt ccgtaagaag aatggaataa ccgaacaaca atatttattg
    12901 ttgcaggtcg gttcagactt cacgcgtaaa ggtgtcgatc gttccattga agcacttgct
    12961 tcgttaccgg attcgctgcg ccacaacaca ttgctatatg ttgttggaca ggataaaccg
    13021 cgaaaatttg aggcgctggc agaaaaacgc ggcgtgcgca gtaatgttca cttcttctcg
    13081 gggcgcaacg atgtctcgga attaatggcg gcggcggatt tattactgca tcctgcctac
    13141 caggaagcag cgggaattgt gctactggaa gcgattactg caggattacc ggtactaaca
    13201 acagccgttt gtggctatgc gcattatatt gtcgacgcca attgcggcga ggctattgct
    13261 gagccattcc gccaggaaac attgaatgag attttacgca aagcgttaac gcaatcttca
    13321 ttgcgccagg cctgggcgga aaatgcgcga cattatgctg atacacaaga tttatacagt
    13381 ctgccagaga aagcggcgga tatcataacg ggtggtctgg atggttgaac ttaaagagcc
    13441 gtttgccacg ttatggcgcg gtaaagatcc ttttgaggaa gttaaaacct tgcagggtga
    13501 ggtttttcgt gaactggaaa ctcgccgcac tctgcgattt gaaatggcgg gcaaaagcta
    13561 ttttctcaaa tggcatcgcg gcacgaccct gaaagagata atcaaaaatt tactctcatt
    13621 gcggatgcca gtattaggcg cagaccgcga atggagtgcg attcatcgac tgcgggatgt
    13681 cggcgttgat actatgtatg gggtggcatt tggcgaaaaa ggtattaatc cgctgagcag
    13741 aacctcgttt attattaccg aagatctgac cccaaccatc agtctggaag attactgtgc
    13801 tgactgggcg actaacccac cagatgttcg cgtaaagcgt atgcttatta agcgtgtcgc
    13861 gacgatggtg cgtgatatgc atgctgcggg cattaaccac cgtgactgtt atatctgtca
    13921 tttcctgctg cacttgcctt tttccggtaa ggaagaggag ttaaaaattt cggtaattga
    13981 cctacaccgg gcgcagcttc gcacgcgcgt tccacgtcgt tggcgcgata aagatcttat
    14041 agggctttat ttttcttcaa tgaatattgg cctgactcag cgggatatct ggcggtttat
    14101 gaaagtgtat tttgccgccc cgcttaaaga cattctcaag caggaacaag gactgctgtc
    14161 gcaagcagaa gcaaaagcca caaaaatcag ggaaagaacg attcgaaaat cgttgtaatt
    14221 tccggagaga aatatgagtg cccactattt taatccacaa gagatgatca ataagacaat
    14281 catcttcgat gaaaggccag cggcgtcagt agcatcatca ttccatgttg cttatggcat
    14341 tgataaaaac tttctttttg gttgtggtgt ttcaatcacg tcagttttgt tacataacaa
    14401 cgacgtgagt tttgttttcc acgtttttat tgatgatatc cctgaagccg atatccagcg
    14461 tttagcccaa ttggcgaaaa gctatcgtac ctgtatccag atccatctag taaattgtga
    14521 acggcttaag gcattaccga cgaccaaaaa ttggtctatt gccatgtatt tccgttttgt
    14581 aattgcagat tactttattg atcaacaaga taagatcctt tacctggatg ctgatatcgc
    14641 ctgtcaggga aacttaaagc cgctgataac aatggatctt gccaataacg ttgctgctgt
    14701 tgttactgaa cgcgatgcta actggtggtc gttacggggt caaagtctgc agtgtaatga
    14761 acttgaaaag ggctacttta attcaggtgt cctgttaatt aatacgctag cgtgggcgca
    14821 ggagtccgtt tctgctaaag cgatgtcgat gcttgctgat aaagccatcg tttcccgttt
    14881 cacctatatg gatcaagata tccttaatct tatcctgtta gggaaagtta aattcattga
    14941 tgctaaatac aatacgcaat ttagtttaaa ttatgaatta aaaaaatcat ttgtttgtcc
    15001 aattaatgat gaaaccgtat taattcatta tgtcggcccg acaaaaccct ggcattactg
    15061 ggccggttat ccaagtgcgc aaccttttat caaagccaaa gaagcatcgc cctggaaaaa
    15121 tgaaccgtta atgcggccag ttaactcaaa ctatgctcgt tattgcgcca agcataattt
    15181 taaacaaaat aaaccaatta acgggataat gaattatatt tattattttt atttaaagat
    15241 aataaaatga aattgagaaa agttaaatga atgaatttat aaaagaacgg ttttcgtatt
    15301 tagcagataa taaaaaagaa aacgccccag agctaaatgt ttcctacggt atcgataaga
    15361 attttttgta tggtgctggc gtttcaattt cttccgtttt gattaataat tcagatatta
    15421 attttgtctt tcatgttttc actgattatg tggatgatga ttatttaaag tcatttaatg
    15481 aaacagcaaa acaatttaat acctcaatta ttgtatattt aattgacccc aaatactttg
    15541 ctgatctgcc gacgtcacag ttttggtcat acgcgacata cttcagggta ttgtcttttg
    15601 aatatctgag tgaaagtatt tccacactgc tgtatctgga tgccgatgtt gtttgtaaag
    15661 gaagcctgaa acctctcaca gaaattatat ttaaagatga gtttgctgcg gtcattcctg
    15721 acaatgatag tactcaggcg gcatgtgcaa aacgcctcaa cattcccgaa atgaatggac
    15781 gttatttcaa tgcaggcgtt atctatgtca atcttaaaaa atggcatgaa gcaaatttga
    15841 caccgtattt actcaaactt ttacgagggg aaactaaata tggctctctt aaatatttag
    15901 atcaggatgc gttgaatatc gcatttaata tgaataatat ctaccttgcg aaggattttg
    15961 atactattta taccctgaaa aacgaacttt atgatcgtag tcatcgaaag tatcagcaaa
    16021 ccattaccga taaaacagtg ttgattcact atacagggat aactaaacca tggcatagct
    16081 gggctggata tccgtctgca tcatacttta atatcgcgcg tgaacaatct ccctggaaga
    16141 aatatcctct taaagaggcg cggactgttg cagaaatgca gaaacaatat aagcatctgt
    16201 ttgcccatgg tgagtatata aaaggcataa cttcattaat taagtacaag cttaagaaat
    16261 aaattactct tatgattaca agtatacgtt atcgcggctt ctcattttat tacaaagata
    16321 atgataataa atataaagaa atctttgatg aaatactggc ctataatttt aaaacagtaa
    16381 aagtattatg taatattgat gataccaaag tatcgttgat tgatacgaaa tatggtcgct
    16441 atgtttttaa agtctttgct ccgaaaacga aaaggaatga acgtttttta aaatcttttg
    16501 taaaaggtga ctactatcag aatttgatcg ttgaaaccga tcgtgtcata agtgcaggtc
    16561 ttacttttcc taatgatttt tattttctgg ctgggcgtaa aattttcaac tatgccagtg
    16621 tttttatcat gcttatcgag tatgtcgagg gcgtagagct caatgatatg ccgattattc
    16681 cagaaaatgt taaagcagaa attaaggctt caatggaaaa attgcatgcc ttaaatatgc
    16741 tatcgggcga cccacaccgg ggtaacttta tcgttagtaa agatggtgtc aggataattg
    16801 acctatccgg taaaagctgt acggcagagc gtaaagctcg tgatcgtctg gccatggaac
    16861 gtcacctggg tattgccaac gaaataaaag attatggcta ctattcagta atctacagaa
    16921 ccaaactacg caaatttatt aaaaaattaa aaggcaaagc gtaaaccaca cagtcaaaac
    16981 ggaaccaaca tggatttatt agctgagagt attactgaag tcgctgtctc tggggaaatt
    17041 gctaacaccg atcgtgtgtt aaatatcgct tacggtattg accgtaactt tttatttggt
    17101 gcggcagtat ctatgcaatc agttgttatg cataacccgg accttgcggt taagtttcat
    17161 ctctttaccg actacattga tgaagattat ctacaacgtg ttaatgcttt taccagcaaa
    17221 aatgctaacg ttgaagtaat aatttataaa gtctccaatg cctttattga tatcttcccc
    17281 agcctgaaac agtggtctta tgcaacattc ttccgtttag ttgcgttcca gtatttgagt
    17341 gaaactattg aaaatctgtt atatatcgat gctgatgtca tctgtaaagg ctcattagct
    17401 ggattgcttg atattaattt tgatgaggat aagttcgcag ctgttattaa agatgtgcct
    17461 tttatgcagg aaaaaccagc gaagcgtctg gctatagagg gacttccagg gaattatttc
    17521 aacgccggtg tagtatatct gcagcttgaa gcatgggcga aaaatgattt tatgaataaa
    17581 gccattgcta tgctggcaag tgacccgcag cacacgaagt ataaatgcct tgatcaggat
    17641 attttaaata ttctgttctt tggtcattgt aattttatta gcggcgatta tgattgcttt
    17701 tatggcattg actatgagtt aaaaaataaa agcgatgaag attataaaaa gaccattacc
    17761 gatgatacta agctgattca ttatgttggc gtaacgaagc cctggaacga ctggacgaat
    17821 tatccctgcc agaagtattt taatgaggct tatcaggctt cttgctggaa tgatgtggcg
    17881 tttattccag ccacgaatga aaagcagtat caagtgaaat atcaacatgc aaagaaaaat
    17941 ggtgatacgt ttaacgcttt tatttacttc attaaattta aattaaataa gtataaaaga
    18001 aaactatttg gataataata aaaatcatgg atgtctgagt tacaataata attaaggatg
    18061 agtactatca tattttatta gttcaggcaa gagaacacga tgagcaatga ttacccttta
    18121 gtatccataa taataccgac gtataattca tctgattaca ttactgaaac tctaacgaaa
    18181 ttagaaaaac aaacttaccc aaattttgaa attgttattg ttaatgatgg ttctaaagat
    18241 aacacatcaa acgttttgag agagtatggg ttaacccact ctcgattaat tattatcaat
    18301 aaagaaaatg gcggtgtttc gtctgccagg aatacaggta tccgcaaggc gcaaggacag
    18361 tttatatgtt ttatggatga tgatgatgag atagatccta actatctgct gaagatgtat
    18421 accagacaac atgagacggg aggggatgcg atttattgtg ggctttatgg ccattatata
    18481 aaagatggtg ttacttactc acctataaat acagagttta atgaaggatc tttacttttc
    18541 gacttttttt ataaaaaggt tagattccat atagggtgct tgtttataag aaaacaactt
    18601 ctggaagaga ataatctttt ttttgatgaa gatttacgac taggagaaga tcttgatttt
    18661 atctatcgac tgctaattac atgcgatatg tatgcggttc catattatat gtataagcat
    18721 aactatagag aaaattcctt aatgaactca tgtagaacca tcactcatta tcgacatgag
    18781 tcatttgcgc acgaaagaat ctactcttct gtgatgcagt tatacaaagg taaccggaaa
    18841 gaagaaattc atacattatt gagtcaaaat agagcttatc ataaaactcg ttatttatgg
    18901 aatgttctac ttaatggtga ttttaaacta ttgaatcaat tagttgaaag caatgaaaaa
    18961 gaattaagag attgtaatct tcctggcaag agagataaga gacgagcaaa aatattagca
    19021 tcaaaaaatt atattctctg gaggatggta agactggtaa atagaaaaaa gaataaacgt
    19081 tagatcttgc attaaataac ccatcctcgt agcataggtt gaaattatat gtcgttttgt
    19141 tggaatgaaa ttaattctgg tataaagtct ttaattctca tattatgtat tttttcttta
    19201 atgactttgt ctttatggga tgatgttgca acaaagtttc ttcatgcagc tggaattata
    19261 tctgcattgt attttcttgc gacaccaaaa aaaacaataa ctaataatcc tactttgtta
    19321 attttcatct cattatgtct tttgggtatc gtaaatatca tctggtattc acattataaa
    19381 gtttcaggct ctgtttatac caatgcatat cgtggcccaa tggaaacagg aaaaattgcc
    19441 ttgtgtagcg cttttatttt cttagttctt tttgctaaaa atgagatgag aacaaaaata
    19501 aaatttggga aactaattct gttcgcatcc ctggcaacgc agttactttt ttttgcgcat
    19561 gccatgtggc aacatttcta tttaaacgtc gaccgtgttg cattatcagc ttcccacgct
    19621 acaacagcag gctacatcat cctttttcct tctttactgg catcaattct cattttaaaa
    19681 tccgacttta gacataaaac aacattatat acaattaact tcatgcttag cttatgtgct
    19741 gtcatagtaa ctgagacgcg tgcagccata ttagtgtttc cattctttgc gttaatatta
    19801 atcgtaatgg atagttatat taataagcga attaattata agttatattg ttttattgcg
    19861 attgcattat tagcaggtgt attttctttt aaagatacat tgcttatgag aatgaatgac
    19921 ttaaataacg atttagttaa ttattcgcat gataacacca gaacttcagt cggtgcccgt
    19981 ctggcaatgt atgaagttgg cttaaaaaca tattctccaa taggacaatc actggaaaaa
    20041 cgtgcagaaa aaatacatga gctagaagaa aaagagccta gattgagtgg cgctttaccc
    20101 tttgtagatt ctcatttgca taacgatctc atagatacgt tatcaacgcg tggtattcct
    20161 ggagttgtat taacaatttt agcattttca gcaatactca tatatgcctt aagaactgct
    20221 aaagaacctt atattttaat cttgcttttt tcactactgg tagtaggcct aagtgatgta
    20281 atactctttt ctaaaccggt tccgactgct gtgtttgtca ccataatatt gctttgtgct
    20341 tattttaaag cacaatcaga ccaatattta ttagataagt aatgaatata tgaaataaaa
    20401 tcagcaagga ggctgatttt atttcaaaat tatctattaa ggggttgtaa tttaaatcat
    20461 agcagcgttt tcagcgtttt cttcaatgaa tcgcttaaca gcatttgctg tcaattgaga
    20521 caactcattc cccggagccc tacaaaccat ctgattcttc ccatacccac caattaatcc
    20581 cggatcggtt ggtccataaa ccgtgatatt gggtctatcc agtgccgccg ttaaatggct
    20641 taaccccgta tccaccgaca ctacaaattt agccccggcc agcacgcggg caacgccttc
    20701 cagactcatc ttcggcaata cttcaacata atcaaatcct tccgccagtc gtttcgcccg
    20761 ttcttcctca tgcggcgcgc cccacggaag tttaatccgt attcctgaat cagccagtaa
    20821 accaatcaat tctcgccagt gttcttccgg ccagtgttta tcatcacggg tcgtcgcatg
    20881 aagaaatacg gcatattcgc cagcatctgt aggcaggttc gtcagaaaat gctgtgcgat
    20941 agcataatcg ccctgggttt gcggtttgct atagcccaaa cttttggcaa acagttcgcg
    21001 ggtgcgttct acggcgtgct gctgttttgc aatatgatgc ttacaattgt aaaacaggct
    21061 ggctaaaggt tcgcgagcgg tttgccagtc caatccatgc tttacgccat gcgccagacg
    21121 tgtcaccagt gccgcgcttt ttaccagccc ctgagcgtcg ataactgcgt catagttctc
    21181 tgcttgtagc gcttcacgaa acgctttgcg ttcagctttt atgggggccg agaaccaggc
    21241 tttacgccag cgacgtattg ccacaggaat aactcgctca acggcagcgt gccaggaagg
    21301 aatctgtgcg aacccttctt ccaccaccca gtcaaactta atccctggga ttgcctgctg
    21361 ggcatcagtg agtgcgggca acgtatggag aacatcgccc atcgacgatg ttttaacgat
    21421 caaaacccgc atccgtcagg cttcctcttg taacaatagc gtgttgagtt cttccagtac
    21481 gcgctgggga gtaatgtcga tcaagctctg gtgataaccc tccgcagcgt cacctttacg
    21541 cactttgtga tagccggtaa tcagacggat cacgcgcgct ttatgggata gcggcggtgt
    21601 gaagtccggg ctacttggac catacagggc aaccagcgga cgattgagcg ccgccgcaac
    21661 gtgcatcagg ccagaatcgt tagtgacaat ggctttacag gctgcaatca ggataaccgc
    21721 ttgatcaagc tgtgtttccc ccgccaggtt ccgacaccat gcctgctgct cggtattcaa
    21781 agcggcaaga atctcattgc ccgcttcatg atctttcgca gagccaaaca gaaccacctg
    21841 ataaccttca tcaatcagct gctttgccag ttccgcatag tggtagtgtg gccagcgttt
    21901 tgccggacca aactccgcac ccgggcaaaa gccaatcatc ggacgttctg atgaaagcga
    21961 aaattgatta caggtatatg atttttcacc ttcgctcacc tgcaactgcg gccataacaa
    22021 tggctgcggc agatcttgtg cggtacgcat aatgcctttg tcataggcca gcgcgacata
    22081 gcgttccacc attagcggcc aggcttcttt atcgagcacg cgtacatcgt tgagtaaacc
    22141 gtagcgcatc tcgccgcgcc agccggtgcg atgaggaata cccgcgaaga aaggcactaa
    22201 tgcagatttg aaggagttgg gtaagacgta ggcgcggtcg tagcgctttt cacgcaggct
    22261 atgacccagt ttgcggcgtt cgccgatttc cagcgctccg tgaccgagag gcatagggat
    22321 agcttcgtta acttccggca tccgcgataa taatggacgg caccatgccg gtgccatcac
    22381 atcgattatc gcctggggat agcgcgcctg gagcgtgcga tagagacttt gcgacatcat
    22441 catgtcgcca acccaagacg ggccgatcac cagtattttc atgcagagct cttatgcgtc
    22501 gcgattcagc caggccatgt attccgttac accttcagca acggttttga acggtttgtc
    22561 gtaacccgcc gcgcgcagat ttgtcagatc tgcctgagtg aacgcctggt agcggccttt
    22621 cagcttatcc gggaacggaa tgtattcgat ctggcctttc ttgtgataag ccagagtagc
    22681 atctgctacg gcctggaagg attccgcacg accagtaccg aggttgaaga taccggaaac
    22741 gccattttcc aggaaccaca ggtttacatc tgccacgtcg cccacataga cgaagtcacg
    22801 tttgaagttc tcgctacctt caaacagctt cggtgattca ccgttgttaa gctgagtgtt
    22861 gagatggaaa gcgacgctcg ccatgctgcc tttatggcct tcacgcggtc cataaacgtt
    22921 gaaatagcgg aagccaacaa tctgcgagtt cgcttcaggc aggatttggc gaacatattc
    22981 atcaaacagg aattttgagt aaccgtagac gttcaacggt ttttcgtact cgcgggattc
    23041 aataaagtcg gaggtgcgtc cgccgtaggt ggctgcggaa gaagcgtaca ggaacgggat
    23101 ttcgcgctcc aggcagtagt gcagcagctc cttggagtat tgatagttgt tatccatcat
    23161 atacttgccg tcccactcgg tggtggaaga gcatgcgcct tcgtggaaaa tcgcttcgac
    23221 atcgccgaac tcttcgccag ccataatctg gatcaggaag tcttccttat ccatatagtc
    23281 cgcgatatcc agatccacca ggttcacaaa cttggtgccg tctttcaggt tgtccaccac
    23341 cagaatatcg gtgatgcctt tatcattcag ggccttaacg atgttgctgc cgataaagcc
    23401 cgcgccgccg gtaacgatga tcataactgt aaccttcgaa ttatggagtt agagacaatc
    23461 tcagacacga atacttctat catatcacta tacggcgttg gcttcagcca ttcgccaaaa
    23521 gtgagattga tggacgttat ttatcctgaa ttttgcagaa gtgttaacgc gtcatctcgt
    23581 cgcgacgtat aagtttgggt aatatgtgct ggaatttgcc ctgtctggag aatcgcaatg
    23641 cgtggagaat tttatcagca gttaaccaac gatctggaaa ccgcacgggc ggaagggttg
    23701 tttaaagaag agcgcattat tacgtctgcg cagcaagcag atatcactgt ggctgatgga
    23761 agccacgtca ttaacttttg tgccaacaac tatctcgggc tggcgaatca tccggatctg
    23821 attgcggcag caaaggcggg aatggattct cacggtttcg gcatggcttc ggtgcgtttt
    23881 atttgcggca ctcaggacag ccataaagag cttgaacaaa aactggcggc attcctgggg
    23941 atggaagatg cgattctcta ctcttcctgc tttgatgcta acggtggact gtttgaaacg
    24001 ctgctgggtg cggaagacgc cattatctcc gacgcactga accacgcgtc tattattgat
    24061 ggtgtgcgtc tgtgcaaagc taaacgctat cgctatgcca acaacgatat gcaggagctg
    24121 gaagcacgtc tgaaagaagc gcgtgaagcc ggtgcgcgtc atgtgctgat tgccaccgat
    24181 ggtgtgttct caatggacgg cgtgattgcc aacctgaaag gcgtttgcga tctggcagat
    24241 aaatacgatg ccttggtgat ggtggatgac tcccacgcgg tcggttttgt cggtgaaaat
    24301 ggtcgtggtt cccatgaata ctgcgatgtg atgggccggg tcgatattat caccggtacg
    24361 cttggtaaag cgctgggcgg ggcttctggt ggttataccg cggcgcgcaa agaggtggtt
    24421 gagtggctgc gccagcgttc tcgtccgtac ctgttctcca actcgctggc accggccatt
    24481 gttgccgcgt ccatcaaagt actggagatg gtcgaagcgg gcagcgaact gcgtgaccgt
    24541 ctgtgggcga acgcgcgtca gttccgtgag caaatgtcgg cggcgggctt taccctggcg
    24601 ggagccgatc acgccattat tccggtcata cttggtgatg cggtagtggc gcagaaattt
    24661 gcccgagagc tgcaaaaaga gggcatttac gtcaccggtt tcttctatcc ggtcgttccg
    24721 aaaggtcagg cgcgtattcg tacccagatg tctgcggcgc atacccctga gcaaattacg
    24781 cgtgcagtag aagcattcac gcgtattggt aaacaactgg gcgttatcgc ctgaggatgt
    24841 gagatgaaag cgttatccaa actgaaagcg gaagagggca tctggatgac cgacgtccct
    24901 gtaccggaac tcgggcataa cgatctgctg attaaaatcc gtaaaacagc catctgcggg
    24961 actgacgttc acatctataa ctgggatgag tggtcgcaaa aaaccatccc ggtgccgatg
    25021 gtcgtaggcc atgaatatgt cggtgaagtg gtaggtattg gtcaggaagt gaaaggcttc
    25081 aaaatcggcg atcgcgtttc tggcgaaggc catatcacct gcggtcactg tcgcaactgt
    25141 cgtggcggtc gtacccatct gtgccgcaac acgatcggcg tcggcgttaa ccgtccgggc
    25201 tgcttcgccg aatatctggt gatcccggcg ttcaacgcct tcaaaatccc agacaatatc
    25261 tccgacgacc tggcttccat ttttgatccc ttcggtaacg ccgtgcatac cgcgctgtcg
    25321 ttcgatctgg ttggcgagga tgtgctggtc tctggtgcag gtccgatagg tattatggct
    25381 gcggcggtgg cgaaacacgt tggtgcacgc aatgtggtga tcactgatgt taacgaatac
    25441 cgccttgagc tggcgcgcaa aatgggtatc acccgtgcgg ttaacgtcgc gaaagaaaac
    25501 cttaatgatg tgatggctga actgggcatg accgaaggct ttgatgtcgg tctggaaatg
    25561 tccggtgcgc cgccagcgtt tcgtaccatg cttgacacca tgaaccacgg cggccgtatt
    25621 gcgatgctgg gtattccgcc gtctgatatg tctatcgact ggaccaaagt gatctttaaa
    25681 ggcttgttca ttaaaggtat ttacggtcgt gagatgtttg aaacctggta caagatggcg
    25741 gcgctgattc agtctggcct cgatctctcg ccgatcatta cccatcgttt ctctatcgat
    25801 gatttccaga agggctttga cgctatgcgt tcgggccagt ccgggaaagt aattctgagc
    25861 tgggattaac acgaacaagg gctggtattc cagccctttt atctggggat aatctgttga
    25921 atatgtaaaa tcctgtcagt gtaataaaga gttcgtaatt gcgctgatct cttatatagc
    25981 tgttctcatt atctctctac cctgaagtga ctctctcacc tgtaaaaata atatctcaca
    26041 ggcttaatag tttcttaata caaagcctgt aaaacgtcag gataacttca gaggtcgtcg
    26101 gtaatttatg atgaacagca ccaataaact tagtgttatt attccgttat ataatgcggg
    26161 cgatgatttc cgcacttgta tggaatcttt aattacgcaa acctggactg ctctggaaat
    26221 cattattatt aacgatggtt caacggataa ttctgttgaa atagcaaagc attacgcaga
    26281 aaactatccg cacgttcgtt tgttgcatca ggcgaatgct ggcgcatcgg tagcgcgtaa
    26341 tcgtgggatc gaggtggcga cgggcaaata tgtcgctttt gtcgatgctg acgatgaggt
    26401 ctatcccacc atgtacgaaa cgctgatgac catggcgtta gaggacgacc tcgacgtggc
    26461 gcagtgcaac gctgactggt cttttcgtga aacgggagaa acctggcaat ccatccccag
    26521 cgatcgcctt cgctcaaccg gcgtattaac cggcccggac tggctgcgga tggggctttc
    26581 ttcgcgccgt tggactcacg ttgtctggat gggggtttat cgccgtgatg ttattgttaa
    26641 aaataacatt aaatttattg ccggattaca tcatcaggat attgtctgga caacagaatt
    26701 catgtttaac gcgctgcgtg cgcgatatac cgagcaatca ttatataaat attatctgca
    26761 taatacgtca gtgagtcggt tgcatagaca agggaataaa aaccttaatt atcaacgtca
    26821 ctatattaag attacccgcc tgctggagaa attaaatcga aattatgctg acaaaattac
    26881 gatttatccg gaatttcatc agcaaataac ttacgaagca ttgcgtgttt gccatgcggt
    26941 gcgcaaagag ccggatattc ttacccgcca acggatgatt gccgagatat ttacttccgg
    27001 tatgtataag cgcctgatta ccaatgtgcg cagcgtgaag gtcggttacc aggcgttact
    27061 gtggtctttc cgcttatggc aatggcgcga caaaacgcgg tcgcaccatc gcattacgcg
    27121 tagcgccttt aatttgcgct agcgttaaac ttcgccgctt cgggctgttt accccagcct
    27181 tgccactgat gctggaagta aacgatcagc gtgctctggc tgatgctttc gcttaatact
    27241 tcaaagaagc gattagcata aacaggttct atcggtttct tcggtttgca cagcttcacg
    27301 ccacggaacg gattacgcgg tgcatcaggc acagcgtttt tcggcggtgt agaagtatca
    27361 acctgcggtt cattcagcaa gctgctggct ttcaccagcg taatgtctgg cggcaggtta
    27421 taaaccatct gttgtagcac gcgtaccgtt aaagggtgag gatgcccaat ggcaatggtt
    27481 gaaccgttgc gacgcgccag atcaattgcg cgattaaatt gcacacggat gtccgcttcg
    27541 ttctgcgaat cgtcgaggaa caccttccgt ttaataacct tcacgccagt accttgcgcg
    27601 gcgcgcatcg cctgggtatt accgatggtt acgctgtcga ggaagtaaag attgtaacgc
    27661 tccagtgcct gcatcacttt ctgcatacca aacaggttag aggtcatctt gctacccatg
    27721 tggttgttga tccccacggc atagggcacg ttattgaccg cactacgaat aatgcgctca
    27781 atttcgtcgc tgctcatctc cgggcgcagc gtatttttct ccagcggctg tttactcagt
    27841 ggtgccatcg ggagatgaat caacacttcg tgcccgctgt tatgcgcttt ggtcgccatc
    27901 tctctggcgt gcggtgaatc gggtaataca gcgacggaga tagcggaggg catcgccagc
    27961 acctggtttt cgttgtgcgg gcgataccca aaatcatcaa tgacgatggc aagtttgcca
    28021 gcaagtacgg gggaggagag cgccaacaga gcggcaaatg caagaacgtt acgacgaaat
    28081 ggaaacaaaa cttatcttcc caaccacggc tgtggattga ccgcctgacc ctggcggcga
    28141 atttcgaaat agagtgaagg ccgaccctga ccgccactgc tgcccaccag tgcaattggc
    28201 tggcccgcgc gaacctgcga accaacgctc accagtgcgc tctgattata gccgtaaaga
    28261 ctcatgtcgc ctttaccgtg ctcaaccacc accaccagac cgtaaccttg cagccagtca
    28321 gccagaatca ctcgaccgtc ggcaattgct ttaacttcag taccttcaga ggcaccgata
    28381 accatccctt tccagcgtaa ttcaccctgt agctgctcgc catagcgatg cagcgtcggc
    28441 ccgcgaaccg gccagaatgc ctgaccacgc ggcgcaccca gaccaccagt tcgggacatc
    28501 agcgattttt cgctttcggt cggtttgtag gtggtgcctt tgcgcgtcgc ttctttctgg
    28561 cggtcgcgaa ccgcctgggc ctcacgcgct tctcgttcag cacgcgcttt cgccgcggct
    28621 tccgcacggg caatgctgtt acgcagacgg gattcgttgg cacgcagttc acttagctgc
    28681 tgctgacctt gctggatgga agattccagc cccgccagcg tctttttacg ctcgttcaga
    28741 gcctgagtca gtttcgcctg ttgggcgcgc tgttcatata acagcgtttg ttgctcgctt
    28801 tgtttctctt ccagttcagc acgctgcatg gcgacttctt cacgcgtttg cttcaactgg
    28861 gcaatggttt cttgtcgcgc ctggttgaga tagccgaaat aagcctgtaa acgctgtcca
    28921 cactggcttt cttcaccgct gagaattagc tgaataccgg tatgctcgcc ctgacggaat
    28981 gcggcatcca gttgtgcggc gaggctgcgc tcctgggcgg ctttttgctg ctccagtttg
    29041 gcaatcgacg cgttcatctc atcaatctgt ttattgagtt gattgagcgt gttttgcgtt
    29101 tcgcgcagct tacgggtggc ttcagagatc gcttcttcct gctttttcaa ttgtgcgagc
    29161 aggcttgcgc gttgttgttg cttttggcgt accgcgcgct cttttgcggc gatatcggcc
    29221 tgaatagatt tgagttggtc acgctcatcc gcgtgggcgg aaaaggcgca caacaatacg
    29281 ccagcgctaa gaacgctggc gtagatgatg ggcctgattg caaacctgcg cggtttcacg
    29341 gcccgtgtca tggtattaat cgcctttccc ctcatgggga gggattattc cacgatgaac
    29401 agcggcttac cagtcatctc ttgcgggatt tccataccca tcagcgacaa catggtcggc
    29461 gcgatgtcag aaagtttgcc gcctgcaacc gctttcacgt tcttatcacc aacgtaaatc
    29521 agcggaactg gcaggttggt gtgtgccgtg tgtgcctgac ccgttgccgg atcgcgcatc
    29581 tgttcagcgt taccgtggtc agcggtgatc agcagttgtc cacccacgga ctcaaccgct
    29641 ttcgcgactt cttccacgca gtgatccagt gcttcaaccg ctttaaccgc cgcttccatc
    29701 accccggtgt gacctaccat gtcgccgttc ggatagttac agataatggt gtcgtatttg
    29761 ccgctcttga tggccgcaac cagtttttcg gtcagctctg cggagctcat ttccggttgc
    29821 agatcgtagg tagccacttt cggtgagttg atcagaatgc gatcttcgcc tttgaatgac
    29881 tcttctacgc caccgttgaa gaagaaagta acgtgggcat atttttcggt ttcggaaata
    29941 cgcaactgag ttttgtcgtt tttcgccatc cactcgccga aggtgttaac cagggaagcg
    30001 ggtgggtaag caaccgcagt tttgatgtca gcggcgtatt cggtcagcat cacgaaatcg
    30061 acgttaacca ctttcttacg cgcgaagccg tcgaaatctg cgtttacgaa tgcacgagtg
    30121 atttcgcgcg cgcggtcagc acggaagttc atgaaaatca gcgcatcgcc gtcttccatt
    30181 gccgcatctg gctgaccttc tgcacgaata acggtcgctt tcacgaactc gtcgttttcg
    30241 tcgcgagcat aagctgcctg caaaccagca acggcagtat cggcctggaa ctcaccctgc
    30301 gccagagtca gcaggtcata ggctttttca acgcgatccc aacggttatc gcggtccatc
    30361 gcgtagtaac gaccaatgat ggacgctacg cggcctttac ccagcgcagc aaatttctct
    30421 tcaaattttt tcagcgagga ttcagcactg cgcggcgggg tgtcgcgacc gtcaaggaat
    30481 gcgtgcaggt agattttttc tgcgccgcgt tcagctgcca gttctaccat cgccatgatg
    30541 tgatcttcgt ggctgtgtac gccgcctgcg gagagcagac ccataatgtg tactgcttta
    30601 cctgcgtttt tcgctttatc taccgcgcca gtcagcactg gattagcaaa gaaagcgcga
    30661 tctttgattt caacgtccag acgagtcagg tcctgataca cgatgcggcc ggcacccagg
    30721 ttaacgtggc ctacttcgga gttacccatc tgacggtcag gcagaccgac ttccagaccg
    30781 gaagcgtcga tcagggtatg cggacgattg gcccacagtg catccattac cggggtttta
    30841 gcactaaaaa tggcgttatc ctgctgttct tcacgatagc catagccatc cagaatcacc
    30901 agtaccatag gttttttaga aaccgacatt gcgacaacct catactcaag agtcaaaatt
    30961 tgcgtaattt tactacagct gaatcgataa aatagcctct gaagatcaaa atatacgacc
    31021 gctcgcggca agccgatgcc agatttgcgc ttttttttcg tcgtgccccg caaaattgca
    31081 ttccagttaa cgcgctggct gtatttgccg caccgcgcag gtatactcct ttcctggttt
    31141 ttttaatcac tacgtcggga gttgttaccc cccatgcaag aaattatgca atttgttggc
    31201 cgtcatccca tactgagtat cgcctggatc gcgttactgg tggcggttct tgtgactacg
    31261 tttaagagcc tgacctcgaa agtgaaggtg attactcgtg gtgaagctac gcgtctgatc
    31321 aacaaagaag acgctgtggt tgtggattta cgtcagcgtg atgacttccg taaaggccat
    31381 atagcaggtt ctatcaatct gttgccgagc gaaatcaaag ccaacaatgt tggtgagctt
    31441 gagaagcaca aagacaaacc ggttatcgtg gtagacggtt ctggcatgca gtgccaggag
    31501 cctgcaaacg cgctgacgaa agctggtttt gcgcaagtat tcgtgctgaa agagggcgtt
    31561 gctggctggg ctggcgaaaa cttgcctctg gtgcgcggca aataatttac ctgtcgtctt
    31621 tcatgatgca ggccgttagc tgcaattagg cccccagcga cttattgtta taagcttctg
    31681 gggacactcc attttgcagc cgccctgcaa catgaaattt cagggtaaaa aaacaggagc
    31741 taaattatgg ccaatgttga aatctatacc aaagaaacct gcccgtattg ccatcgtgca
    31801 aaagcactgc tgagcagcaa gggcgtgagt tttcaggagt tgccgatcga tggcaatgcc
    31861 gccaagcgtg aagagatgat caaacgcagc ggtcgcacca cggttcccca gatttttatt
    31921 gacgcacagc acattggcgg ctgtgatgac ttgtatgcat tggatgcacg tggtggactg
    31981 gatcccctgc tgaaataacg tgtgaacgtt ggcattacat tgcgcagtat ttaaggacaa
    32041 cacttaaggg ttttctacac atgtcagaac aaaacaacac tgaaatgact ttccagatcc
    32101 aacgtattta taccaaggat atctctttcg aagcgccgaa cgcgccgcac gttttccaga
    32161 aagattggca accagaagtt aaacttgatc tggatacggc atcttcccaa ctggcagatg
    32221 acgtatacga agtggtactg cgtgttaccg taacggcctc cctgggcgaa gaaaccgcgt
    32281 tcctgtgtga agttcagcag ggcggtattt tctccatcgc gggtatcgaa ggcacccaga
    32341 tggcacattg cctgggcgca tactgcccga acattctgtt cccgtatgct cgtgagtgca
    32401 tcaccagcat ggtatcccgc ggtacattcc cgcaactgaa ccttgcgccg gttaacttcg
    32461 atgcgctgtt catgaactat ttgcagcagc aggctggcga aggtactgaa gaacatcagg
    32521 atgcctgatg aaccaacgta atgcttcaat gactgtgatc ggtgccggct cgtacggcac
    32581 cgctcttgcc attaccctgg caagaaatgg ccacgaggtt gtcctctggg gccatgaccc
    32641 tgaacatatc gcaacgcttg aacgcgaccg ctgtaacgcc gcgtttctcc ccgatgtgcc
    32701 ttttcccgat acgctccatc ttgaaagcga tctcgccact gcgctggcag ccagccgtaa
    32761 tattctcgtc gtcgtaccca gccatgtctt tggtgaagtg ctgcgccaga ttaaaccgct
    32821 gatgcgtcct gatgcgcgtc tggtgtgggc gaccaaaggg ctggaagcgg aaaccggacg
    32881 tctgttacag gacgtggcgc gtgaggcctt aggcgatcaa attccgctgg cggttatctc
    32941 tggcccaacg tttgcgaaag aactggcggc aggtttaccg acggctattt cgttggcctc
    33001 taccgaccag acctttgccg atgatctcca acaattgctg cactgtggca aaagtttccg
    33061 cgtttacagc aacccggatt tcatcggtgt gcagcttggc ggtgcggtga aaaacgtcat
    33121 tgccattggc gcggggatgt ccgacggtat cggttttggt gcgaatgcgc gtacggcact
    33181 gatcacccgt gggctggctg aaatgtcgcg tcttggcgcg gcgctgggtg ccgagcctgc
    33241 cacctttatg ggcatggcgg ggctgggcga tcttgtgctt acctgtaccg acaaccagtc
    33301 gcgtaaccgc cgttttggca tgatgctcgg tcagggcatg gatgtacaaa gcgcgcagga
    33361 gaagattggt caggtggtgg aaggctaccg caatacgaaa gaagtccgcg aactggcgca
    33421 tcgcttcggc gtagaaatgc caataaccga ggaaatttat caagtattat attgcggaaa
    33481 aaacgcgcgc gaggcagcat tgacgttatt aggtcgtgca cgcaaggacg agcgcagcag
    33541 ccactaaccc cagggaacct ttgttaccgc tatgacccgg cccgcgcaga acgggccggt
    33601 cattatctca tcgtgtggag taagtaatgt cgtgtgaaga actggaaatt gtctggaaca
    33661 atattaaagc cgaagccaga acgctggcgg actgtgagcc aatgctggcc agtttttacc
    33721 acgcgacgct actcaagcac gaaaaccttg gtagtgcact gagctacatg ctggcgaaca
    33781 agctgtcatc gccaattatg cctgctattg ctatccgtga agtggtggaa gaagcctacg
    33841 ccgctgaccc ggaaatgatc gcctctgcgg cctgtgatat tcaggcggtg cgtacccgcg
    33901 acccggcagt cgataaatac tcaaccccgt tgttatacct gaagggtttt catgccttgc
    33961 aggcctatcg catcggtcac tggttgtgga atcaggggcg tcgcgcattg gcaatctttc
    34021 tgcaaaacca ggtttctgtg acgttccagg tcgatattca cccggcagca aaaattggcc
    34081 gtggcattat gctcgaccac gccacgggca tcgttgtggg tgaaacggcg gtaattgaaa
    34141 acgacgtatc gattctgcaa tctgtgacgc ttggcggtac gggtaaatct ggtggtgacc
    34201 gtcacccgaa aattcgtgaa ggtgtgatga ttggcgcggg cgcgaaaatc ctcggcaata
    34261 ttgaagttgg tcgcggcgcg aagattggcg caggttccgt ggtgctgcaa ccggtgccgc
    34321 cgcatacaac cgccgctggc gttccggctc gtattgtcgg taaaccagac agcgataagc
    34381 catcaatgga tatggaccag catttcaacg gtattaacca tacatttgag tatggggatg
    34441 ggatctaatg tcctgtgatc gtgccggatg cgatgtaatc atctatccgg catacagtaa
    34501 ctaatctctc aacaacgctc ccggatatcc cagctgccgc caggcttcat acaccactac
    34561 cgacaccgca ttggacagat tcatgctgcg gctgtccggc accatcggaa tgcgaatttt
    34621 ttgttcagcg ggcagggcat caagaatgct cgctggcagg ccgcgtgttt ccgggccgaa
    34681 catcagataa tcgccatcct gatagcttac ggcgctgtga gcaggcgtac ctttcgtggt
    34741 gagggcaaac aggcgctggg gattttctgc ttcgaggaac gcgcgatagt catgatgacg
    34801 cgtaacggcg gtaaactcgt gatagtccag ccccgcgcgg cgcaggcgct tatcgtccca
    34861 ggcaaatccc atcggttcga tgatatgcag acgaaagccg gtattagcgc aaagacggat
    34921 gatgttgcca gtatttggcg gaatttctgg ttcgtaaagt acgatgttta gcatactgcc
    34981 cccttagtgc gggggcagga tagcagaaaa ttggtgaacc gtgcggcctt ttcccctcac
    35041 cccggccctc cccctgtctc ttgatcagga gatctgatca agagacagct ccctgaggga
    35101 gagggt
//
LOCUS       DADMHM010000019        34989 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.020, whole genome shotgun sequence.
ACCESSION   DADMHM010000019 DADMHM010000000
VERSION     DADMHM010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 34989)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34989)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34989
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.020"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..1239
                     /gene="dsdA"
                     /locus_tag="JN125_000809"
     CDS             <1..1239
                     /gene="dsdA"
                     /locus_tag="JN125_000809"
                     /EC_number="4.3.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-serine ammonia-lyase"
                     /protein_id="HAY8870678.1"
                     /translation="GTTSLAEGLPYVGLNEQDVQDAHARLSRFAPYLAKAFAETAATG
                     GIIESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISSSIKARGGIYEVLAHAEK
                     LALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHM
                     SADAWAWKKAKLRSHGVTVVEYEQDYGVAVEEGRKAAQSDPNCFFIDDENSRTLFLGY
                     SVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEP
                     THSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMVRLLDGFYTLS
                     DQTMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCASVSYQQMHGFSAEQLRNTTHLVW
                     ATGGGMVPEEEMNQYLAKGR"
     gene            complement(1347..2885)
                     /gene="emrY"
                     /locus_tag="JN125_000810"
     CDS             complement(1347..2885)
                     /gene="emrY"
                     /locus_tag="JN125_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter permease
                     subunit EmrY"
                     /protein_id="HAY8870679.1"
                     /translation="MAITKSTPAPLTGGTLWCVTIALSLATFMQMLDSTISNVAIPTI
                     SGFLGASTDEGTWVITSFGVANAIAIPVTGRLAQRIGELRLFLLSVTFFSLSSLMCSL
                     STNLDVLIFFRVVQGLMAGPLIPLSQSLLLRNYPPEKRTFALALWSMTVIIAPICGPI
                     LGGYICDNFNWGWIFLINVPMGIIVLTLCLTLLKGRETETSPVKMNLPGLTLLVLGVG
                     GLQIMLDKGRDLDWFNSSTIIILTVVSVISLISLVIWESTSENPILDLSLFKSRNFTI
                     GIVSITCAYLFYSGAIVLMPQLLQETMGYNAIWAGLAYAPIGIMPLLISPLIGRYGNK
                     IDMRLLVTFSFLMYAVCYYWRSVTFMPTIDFTGIILPQFFQGFAVACFFLPLTTISFS
                     GLPDNKFANASSMSNFFRTLSGSVGTSLTMTLWGRRESLHHSQLTATIDQFNPVFNSS
                     SQIMDKYYGSLSGVLNEINNEITQQSLSISANEIFRMAAIAFILLTVLVWFAKPPFTA
                     KGVG"
     gene            complement(2885..4048)
                     /gene="emrK"
                     /locus_tag="JN125_000811"
     CDS             complement(2885..4048)
                     /gene="emrK"
                     /locus_tag="JN125_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter periplasmic
                     adaptor subunit EmrK"
                     /protein_id="HAY8870680.1"
                     /translation="MEQINSNKKHSNRRKYFSLLVVVLFIAFSGAYAYWSMELEDMIS
                     TDDAYVTGNADPISAQVSGSVTVVNHKDTNYVRQGDILVSLDKTDATIALNKAKNNLA
                     NIVRQTNKLYLQDKQYSAEVASARIQYQQSLEDYNRRVPLAKQGVISKETLEHTKDTL
                     ISSKAALNAAIQAYKANKALVMNTPLNRQPQVVEAADATKEAWLALKRTDIKSPVTGY
                     IAQRSVQVGETVSPGQSLMAVVPARQMWVNANFKETQLTDVRIGQSVNIISDLYGENV
                     VFHGRVTGINMGTGNAFSLLPAQNATGNWIKIVQRVPVEVSLDPKELMEHPLRIGLSM
                     TATIDTKNEDIAEMPELASTVTSMPAYTSKALVIDTSPIEKEISNIISHNGQL"
     gene            4464..5078
                     /gene="evgA"
                     /locus_tag="JN125_000812"
     CDS             4464..5078
                     /gene="evgA"
                     /locus_tag="JN125_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-sensing system DNA-binding response
                     regulator EvgA"
                     /protein_id="HAY8870681.1"
                     /translation="MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL
                     KPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSK
                     KEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKD
                     NNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKIG"
     gene            5083..8676
                     /gene="evgS"
                     /locus_tag="JN125_000813"
     CDS             5083..8676
                     /gene="evgS"
                     /locus_tag="JN125_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-sensing system histidine kinase EvgS"
                     /protein_id="HAY8870682.1"
                     /translation="MKFLPYFFLLCCGLWSTISFADEDYIEYRGISSNNRVTLDPVRL
                     SNKELRWLASKKNLVIAVHKSQTATLLHTDSQQRVRGINADYLNLLKRALNIKLTLRE
                     YADHQKAMDALEEGEVDIVLSHLVASPPLNDDIAATKPLIITFPALVTTLHDSMRPLT
                     SSKPVNIARVANYPPDEVIHQSFPKATIISFTNLYQALASVSAGQNDYFIGSNIITSS
                     MISRYFTHSLNVVKYYNSPRQYNFFLTRKESVVLNEVLNRFVDALTNEVRYEVSQNWL
                     DTGNLAFLNKPLELTEHEKQWIKQHPDLKVLENPYSPPYSMTDENGSVRGVMGDILNI
                     ITLQTGLNFSPITVSHNIHAGTQLNPGGWDIIPGAIYSEDRENNVSFAEAFITTPYVF
                     VMQKAPDSEQTLKKGMKVAIPYYYELHSQLKEMYPEVEWIKVDNASAAFHKVKEGELD
                     ALVATQLNSRYMIDHYYPNELYHFLIPGVPNASLSFAFPRGEPELKDIINKALNAIPP
                     SEVLRLTEKWIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKV
                     IQGDLENQISFRKALSDSLPNPTYVVNWQGNVISHNSAFEHYFTADYYKNAILPLENS
                     DSPFKDVFSNAHEVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDHAVYI
                     CGWQDITETRDLIHALEVERNKAINATVAKSQFLATMSHEIRTPISSIMGFLELLSGS
                     GLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQLQWVDIPTLVQNTCHS
                     FGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTSEGAVKITTSLV
                     HIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNM
                     QGDLSLESHPGIGTTFTITIPVEISQQVATVEAKAEHPITLPEKLSILIADDHPTNRL
                     LLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTRKLREQNSS
                     LPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQVAHIAPQYRHLDI
                     EALKNNTANDLQLMQEILITFQHETHKDLPAAFQALEAGDNRTFHQCIHRIHGAANIL
                     NLQKLINISHQLEITPVSDDSKPEILQLLNSVKEHIAELDQEIAVFCQKND"
     gene            complement(8732..9877)
                     /gene="yfdE"
                     /locus_tag="JN125_000814"
     CDS             complement(8732..9877)
                     /gene="yfdE"
                     /locus_tag="JN125_000814"
                     /EC_number="2.8.3.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416872.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA:oxalate CoA-transferase"
                     /protein_id="HAY8870683.1"
                     /translation="MTNNESKGPFEGLLVIDMTHVLNGPFGTQLLCNMGARVIKVEPP
                     GHGDDTRTFGPYVDGQSLYYSFINHGKESVVLDLKNDYDKSIFINMLKQADVLAENFR
                     PGTMEKLGFSWETLQEINPSLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYP
                     DAPPVRVGTSLADLCGGVYLFSGIVSALYGREKSQRGAHVDIAMFDATLSFLEHGLMA
                     YIATGKSPQRLGNRHPYMAPFDVFNTQDKPITICCGNDKLFSALCQALELTELVNDPR
                     FSSNILRVQNQAILKQYIERTLKTQAAEVWLARIHEVGVPVAPLLSVAEAIKLPQTQA
                     RNMLIEAGGIMMPGNPIKISGCADPHVMPGAATLDQHGEQIRQEFSS"
     gene            complement(9951..10895)
                     /gene="yfdV"
                     /locus_tag="JN125_000815"
     CDS             complement(9951..10895)
                     /gene="yfdV"
                     /locus_tag="JN125_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter YfdV"
                     /protein_id="HAY8870684.1"
                     /translation="MLTFFIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYA
                     LPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFFSWFGCYKFFKRTHAEAAVCAL
                     IAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKK
                     NSNLSALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLT
                     LAAHKFEFSAEIAYNTFLKLILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGII
                     IASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVSRLVS"
     gene            complement(10965..12659)
                     /gene="oxc"
                     /locus_tag="JN125_000816"
     CDS             complement(10965..12659)
                     /gene="oxc"
                     /locus_tag="JN125_000816"
                     /EC_number="4.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxalyl-CoA decarboxylase"
                     /protein_id="HAY8870685.1"
                     /translation="MSDQLQMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAE
                     GIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNGLTALANATVNGFPMIMI
                     SGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPG
                     GVYLDLPANVLAATMEKDEALTTIVKVENPSPALLPCPKSVTSAISLLAKAERPLIIL
                     GKGAAYSQADEQLREFIESAQIPFLPMSMAKGILEDTHPLSAAAARSFALANADVVML
                     VGARLNWLLAHGKKGWAADTQFIQLDIEPQEIDSNRPIAVPVIGDIASSMQGMLAELK
                     QNTFTTPLVWRDILNIHKQQNAQKMHEKLSTDTQPLNYFNALSAVRDVLRENQDIYLV
                     NEGANTLDNARNIIDMYKPRRRLDCGTWGVMGIGMGYAIGASVTSGSPVVAIEGDSAF
                     GFSGMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAPSPTDLLHHARYDKLMDA
                     FRGVGYNVTTKDELRHALTTGIQSRKPTIINVVIDPAAGTESGHITKLNPKQVAGN"
     gene            complement(12713..13963)
                     /gene="frc"
                     /locus_tag="JN125_000817"
     CDS             complement(12713..13963)
                     /gene="frc"
                     /locus_tag="JN125_000817"
                     /EC_number="2.8.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyl-CoA transferase"
                     /protein_id="HAY8870686.1"
                     /translation="MSTPLQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDV
                     TRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAI
                     DHMGFTWEHIQEINPRLIFGSIKGFDECSPYVNVKAYENVAQAAGGAASTTGFWDGPP
                     LVSAAALGDSNTGMHLLIGLLAALLHREKTGRGQRVTMSMQDAVLNLCRVKLRDQQRL
                     DKLGYLEEYPQYPNGTFGDAVPRGGNAGGGGQPGWILKCKGWETDPNAYIYFTIQEQN
                     WENTCKAIGKPEWITDPAYSTAHARQPHIFDIFAEIEKYTVTIDKHEAVAYLTQFDIP
                     CAPVLSMKEISLDPSLRQSGSVVEVEQPLRGKYLTVGCPMKFSAFTPDIKAAPLLGEH
                     TAVVLQELGYSDDEIAAMKQNHAI"
     gene            complement(14476..15108)
                     /locus_tag="JN125_000818"
     CDS             complement(14476..15108)
                     /locus_tag="JN125_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfdX family protein"
                     /protein_id="HAY8870687.1"
                     /translation="MKRLIMATMVTAILASSTVWAADNAPVAAQQQTQQVQQTQKTAA
                     AERISEQGLYAMRDVQVARLALFHGDPEKAKELTNEASALLSDDSTEWAKFAKPGKKT
                     NLNDDQYIVINASVGISESYVATPEKEAAIKIANEKMAKGDKKGAMEELRLAGVGVME
                     NQYLMPLKQTRNALADAQKLLDKKQYYEANLALKGAEDGIIVDSEALFVN"
     gene            15404..15679
                     /gene="ypdI"
                     /locus_tag="JN125_000819"
     CDS             15404..15679
                     /gene="ypdI"
                     /locus_tag="JN125_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colanic acid biosynthesis lipoprotein YpdI"
                     /protein_id="HAY8870688.1"
                     /translation="MKVNLILFSLFLLVSIMACNVFAFSISGGVSERSYKETEKTSAM
                     TTTHSTKLQPSQAILFKMREDAPPLNLTEEITPTYPTKANYLIHPVR"
     gene            complement(15756..15998)
                     /locus_tag="JN125_000820"
     CDS             complement(15756..15998)
                     /locus_tag="JN125_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfdY family protein"
                     /protein_id="HAY8870689.1"
                     /translation="MIYLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYY
                     FTMWLTGGNELVTGIFMFLAPACGLMIRFMVGYGRR"
     gene            16351..17271
                     /gene="lpxP"
                     /locus_tag="JN125_000821"
     CDS             16351..17271
                     /gene="lpxP"
                     /locus_tag="JN125_000821"
                     /EC_number="2.3.1.242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311285.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kdo(2)-lipid IV(A) palmitoleoyltransferase"
                     /protein_id="HAY8870690.1"
                     /translation="MFPQCKFSREFLHPRYWLTWFGLGVLWLWVQLPYPVLCFLGTRI
                     GAMARPFLKRRESIARKNLELCFPQHSAEEREKMIAENFRSLGMALVETGMAWFWPDS
                     RVRKWFDVEGLDNLKRAQMQNRGVMVVGVHFMSLELGGRVMGLCQPMMATYRPHNNQL
                     MEWVQTRGRMRSNKAMIGRNNLRGIVGALKKGEAVWFAPDQDYGRKGSSFAPFFAVEN
                     VATTNGTYVLSRLSGAAMLTVTMVRKADYSGYRLFITPEMEGYPTDENQAAAYMNKII
                     EKEIMRAPEQYLWIHCRFKTRPVGESSLYI"
     gene            17627..17698
                     /gene="ypdK"
                     /locus_tag="JN125_000822"
     CDS             17627..17698
                     /gene="ypdK"
                     /locus_tag="JN125_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_077777854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein YpdK"
                     /protein_id="HAY8870691.1"
                     /translation="MKYFFMGISFMVIVWAGTFALMI"
     gene            complement(17763..19001)
                     /gene="alaC"
                     /locus_tag="JN125_000823"
     CDS             complement(17763..19001)
                     /gene="alaC"
                     /locus_tag="JN125_000823"
                     /EC_number="2.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine transaminase"
                     /protein_id="HAY8870692.1"
                     /translation="MADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMG
                     NPDGATPPHIVEKLCTVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVEIDPESEAI
                     VTIGSKEGLAHLMLATLDHGDMVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNE
                     LERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVY
                     DGWKAPSIMQVPGARDVAVEFFTLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYG
                     TFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWIVEMPKASMYVWAKI
                     PEPYAAMGSLVFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAIRGIKA
                     MFRADGLLPASSKHIHENAE"
     gene            19378..21075
                     /locus_tag="JN125_000824"
     CDS             19378..21075
                     /locus_tag="JN125_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HAY8870693.1"
                     /translation="MHEIFNMLLAVFDRAALMLICLFFLIRIRLFRELLHKSAHSPKE
                     LLAVTAIFSLFALFSTWSGVPVEGSLVNVRIIAVMSGGILFGPWVGIITGVIAGIHRY
                     LIDIGGVTAIPCFITSILAGCISGWINLKIPKAQRWRVGILGGMLCETLTMILVIVWA
                     PTTALGIDIVSKIGIPMILGSVCIGFIVLLVQSVEGEKEASAARQAKLALDIANKTLP
                     LFRHVNSESLRKVCEIIRDDIHADAVAITNTDHVLAYVGVGEHNYQNGDDFISPTTRQ
                     AMNYGKIIIKNNDEAHRTPEIHSMLVIPLWEKGVVTGTLKIYYCHAHQITSSLQEMAV
                     GLSQIISTQLEVSRAEQLREMANKAELRTLQSKINPHFLFNALNAISSSIRLNPDTAR
                     QLIFNLSRYLRYNIELKDDEQIDIKKELYQIKDYIAIEQARFGDKLTVIYDIDEEVNC
                     CIPSLLIQPLVENAIVHGIQPCKGKGVVTISVAECGNRVRIAVRDTGHGIDPKVIERV
                     EANEMPGNKIGLLNVHHRVKLLYGEGLHIRRLEPGTEIAFYIPNQRTPVASQATLLL"
     gene            21090..21824
                     /locus_tag="JN125_000825"
     CDS             21090..21824
                     /locus_tag="JN125_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HAY8870694.1"
                     /translation="MKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQH
                     NRVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKP
                     YQESRITGMLQKLEAAWQQQQTSSTPAATVTRENDTINLVKDERIIVTPINDIYYAEA
                     HEKMTFVYTRRESYVMPMNITEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYI
                     LRLKDLDFEVPVSRSKVKEFRQLMHL"
     gene            21837..22694
                     /locus_tag="JN125_000826"
     CDS             21837..22694
                     /locus_tag="JN125_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAY8870695.1"
                     /translation="MKAPGLPADQQFFADLFSGLVLNPQLLGRVWFASQPASLPVGSL
                     CIDFPRLDIVLRGEYGNLLEAKQQRMVEGEMLFIPARAANLPINNKPVMLLSLVFAPT
                     WLGLSFYDSRTTSLLHPARQIQLPSLQRGEGEAMLTALTHLSRSPLEQNIIQPLVLSL
                     LHLCRNVVNMPPGNSQPRGDFLYHSICNWVQDNYTQPLTRESVAQFFNITPNHLSKLF
                     AQHGTMRFIEYVRWVRMAKARMILQKYHLSIHEVAQRCGFPDSDYFCRVFRRQFGLTP
                     GEYSARFQG"
     gene            complement(22697..25191)
                     /gene="ptsP"
                     /locus_tag="JN125_000827"
                     /pseudo
     CDS             complement(22697..25191)
                     /gene="ptsP"
                     /locus_tag="JN125_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416884.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
     gene            complement(25216..26260)
                     /gene="ypdE"
                     /locus_tag="JN125_000828"
                     /pseudo
     CDS             complement(25216..26260)
                     /gene="ypdE"
                     /locus_tag="JN125_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311291.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
     gene            complement(26260..27345)
                     /gene="ypdF"
                     /locus_tag="JN125_000829"
     CDS             complement(26260..27345)
                     /gene="ypdF"
                     /locus_tag="JN125_000829"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HAY8870696.1"
                     /translation="MTLLASLRDWLKAQQLDAVLLSSRQNKQPHLGISTGSGYVVISR
                     ESAHILVDSRYFVEVEARAQGYQLHLLDATNTLTTIVNQIIADEQLQTLGFEGQQVSW
                     ETAHRWKSELNAKLVSATPDVLRQIKTPEEVEIIRLACGIADRGAEHIRRFIQAGMSE
                     REIAAELEWFMRQQGAEKASFDTIVASGWRGVLPHGKASDKIVAAGEFVTLDFGALYQ
                     GYCSDMTRTLLVNGEGVSAESHPLFDVYQIVLQAQLAAISAIRPGVRCQQIDDAARRV
                     ITEAGFGDYFGHNTGHAIGIEVHEDPRFSPRGTKTLQPGMLLTVEPGIYLPGQGGVRI
                     EDVVLVTPQGAEVLYAMPKTVLLTGEA"
     gene            complement(27360..28607)
                     /locus_tag="JN125_000830"
     CDS             complement(27360..28607)
                     /locus_tag="JN125_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-like permease IIC component"
                     /protein_id="HAY8870697.1"
                     /translation="MAIKKRSATVVPGASGAAAAVKNPQASKSSFWGELPQHVMSGIS
                     RMVPTLIMGGVILAFSQLIAYSWLKIPAEIGIMDALNSGKFSGFDLSLLKFAWLSQSF
                     GGVLFGFAIPMFAAFVANSIGGKLAFPAGFIGGLMSTQPTQLLNFDPSTMQWATSSPV
                     PSTFIGALIISIVAGYLVKWMNQKIQLPDFLLAFKTTFLLPILSAIFVMLAMYYVITP
                     FGGWINGGIRTVLTAAGEKGALMYAMGIAAATAIDLGGPINKAAGFVAFSFTTDHVLP
                     VTARSIAIVIPPIGLGLATIIDRRLTGKRLFNAQLYPQGKTAMFLAFMGISEGAIPFA
                     LESPITAIPSYMVGAIVGSTAAVWLGAVQWFPESAIWAWPLVTNLGVYMAGIALGAVI
                     TALMVVFLRLMMFRKGKLLIDSL"
     gene            complement(28629..28955)
                     /locus_tag="JN125_000831"
     CDS             complement(28629..28955)
                     /locus_tag="JN125_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-like phosphotransferase enzyme IIB
                     component 1"
                     /protein_id="HAY8870698.1"
                     /translation="MSKKLIALCACPMGLAHTFMAAQALEEAAVEAGYEVKIETQGAD
                     GIQNRLTAQDIAEATIIIHSVAVTPEDNERFESRDVYEITLQDAIKNAAGIIKEIEEM
                     IASEQQ"
     gene            complement(29174..30139)
                     /gene="glk"
                     /locus_tag="JN125_000832"
     CDS             complement(29174..30139)
                     /gene="glk"
                     /locus_tag="JN125_000832"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucokinase"
                     /protein_id="HAY8870699.1"
                     /translation="MIKYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAV
                     IRVYLEEHKVEVKDGCIAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFT
                     AVSMAIPMLKKEHLIQFGGAEPVEGKPIAVYGAGTGLGVAHLVHVDKRWVSLPGEGGH
                     VDFAPNSEEEAIILEILRAEIGHVSAERVLSGPGLVNLYRAIVKADNRLPENLKPKDI
                     TERALADSCTDCRRALSLFCVIMGRFGGNLALNLGTFGGVFIAGGIVPRFLEFFKASG
                     FRAAFEDKGRFKEYVHDIPVYLIVHDNPGLLGSGAHLRQTLGHIL"
     gene            30343..31599
                     /locus_tag="JN125_000833"
     CDS             30343..31599
                     /locus_tag="JN125_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ion channel protein"
                     /protein_id="HAY8870700.1"
                     /translation="MLHPRARTMLLLSLPAVAIGIASSLILIVVMKIASVLQNLLWQR
                     LPGTLGIAQDSPLWIIGVLTLTGIAVGLVIRFSQGHAGPDPACEPLIGAPVPPSALPG
                     LIVALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLPRVNRMEWTILASAGTIGALF
                     GTPVAAALIFSQTLNGSSEVPLWDRLFAPLMAAAAGALTTGLFFHPHFSLPIAHYGQM
                     EMTDILSGAIVAAIAIAAGMVAVWCLPRLHAMMNQMKNPVLVLGIGGFILGILGVIGG
                     PVSLFKGLDEMQQMVANQAFSTSDYFLLAVIKLAALVVAAASGFRGGRIFPAVFVGVA
                     LGLMLHEHVPAVPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPNTTLLPLLCIVML
                     PAWLLLAGKPMMMVNRPKQQPPHDNV"
     gene            31714..32040
                     /locus_tag="JN125_000834"
     CDS             31714..32040
                     /locus_tag="JN125_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2502 domain-containing protein"
                     /protein_id="HAY8870701.1"
                     /translation="MFRSLFLAAALMAFTPLAANAGEITLLPSIKLQIGDRDHYGNYW
                     DGGHWRDRDYWHRNYEWRKNRWWRHDNGYHRGWDKRKAYERGYREGWRDRDDHRGKGR
                     GHGHRH"
     gene            complement(32181..33419)
                     /gene="mntH"
                     /locus_tag="JN125_000835"
     CDS             complement(32181..33419)
                     /gene="mntH"
                     /locus_tag="JN125_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mn(2+) uptake NRAMP transporter MntH"
                     /protein_id="HAY8870702.1"
                     /translation="MTNYRVESSSGRAARKMRLALMGPAFIAAIGYIDPGNFATNIQA
                     GASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAE
                     IIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGL
                     LLFVAAAYIVELIFSQPNLAQLGKGMVIPSLPTSEAVFLAAGVLGATIMPHVIYLHSS
                     LTQHLHGGSRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGVADLDEAY
                     LTLQPLLSHAAATVFGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVRRTVTMLP
                     SFIVILMGLDPTRILVMSQVLLSFGIALALVPLLIFTSDSKLMGDLVNSKRVKQTGWV
                     IVVLVVALNIWLLVGTALGL"
     gene            33755..34957
                     /gene="nupC"
                     /locus_tag="JN125_000836"
     CDS             33755..34957
                     /gene="nupC"
                     /locus_tag="JN125_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside permease NupC"
                     /protein_id="HAY8870703.1"
                     /translation="MDRVLHFVLALAVVAILALLVSSDRKKIRIRYVIQLLVIEVLLA
                     WFFLNSDVGLGFVKGFSEMFEKLLGFANEGTNFVFGSMNDQGLAFFFLKVLCPIVFIS
                     ALIGILQHIRVLPVIIRAIGFLLSKVNGMGKLESFNAVSSLILGQSENFIAYKDILGK
                     ISRNRMYTMAATAMSTVSMSIVGAYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVD
                     ASEENIQMSNLHEGQSFFEMLGEYILAGFKVAIIVAAMLIGFIALIAALNALFATVTG
                     WFGYSISFQGILGYIFYPIAWVMGVPSSEALQVGSIMATKLVSNEFVAMMDLQKIAST
                     LSPRAEGIISVFLVSFANFSSIGIIAGAVKGLNEEQGNVVSRFGLKLVYGSTLVSVLS
                     ASIAALVL"
BASE COUNT         9230 a         8687 c         8068 g         9004 t
ORIGIN      
        1 ggcacgacct cattggctga aggtttacct tatgttggcc tgaacgaaca ggatgttcag
       61 gacgcccatg cgcgcttatc ccgttttgca ccctatctgg caaaagcatt tgctgaaact
      121 gctgccactg gggggattat tgaatcagaa ctggttgcca ttccagctat gcaaaaacgg
      181 ctggaaaaag aatatcagca accgatcagc gggcaactgt tactgaaaaa agatagccat
      241 ttgcccattt ccagctccat aaaagcacgc ggcgggattt atgaagtcct ggcacacgca
      301 gaaaaactgg ctctggaagc ggggttgctg acgcttgatg atgactacag caaactgctt
      361 tctccggagt ttaaacagtt ctttagccaa tacagcattg ctgtgggctc aaccggaaat
      421 ctggggttat caatcggcat tatgagcgcc cgcattggct ttaaggtgac agttcatatg
      481 tctgctgatg cctgggcatg gaaaaaagcg aaactgcgca gccatggcgt tacggtcgtg
      541 gaatatgagc aagattatgg tgttgccgtc gaggaaggac gtaaagcagc gcagtctgac
      601 ccgaactgtt tctttattga tgacgaaaat tcccgcacgt tgttccttgg gtattccgtc
      661 gctggccagc gtcttaaagc gcaatttgcc cagcaaggcc gtatcgtcga tgctgataac
      721 cctctgtttg tctatctgcc gtgtggtgtt ggcggtggtc ctggtggcgt cgcattcggg
      781 cttaaactgg cgtttggcga tcatgttcac tgcttttttg ccgaaccaac gcactcccct
      841 tgtatgttgt taggcgtcca tacaggatta cacgatcaga tttctgttca ggatattggt
      901 atcgacaacc ttaccgcagc ggatggcctt gcagttggtc gcgcatcagg ctttgtcggg
      961 cgggcaatgg tgcgtctgct ggatggcttc tataccctta gcgatcaaac catgtatgac
     1021 atgcttggct ggctggcgca ggaagaaggt attcgtcttg aaccttcggc actggcgggt
     1081 atggccggac ctcagcgcgt gtgtgcatca gtaagttacc aacagatgca cggtttcagc
     1141 gcagaacaac tgcgtaatac cactcatctg gtgtgggcga cgggaggtgg aatggtgccg
     1201 gaagaagaga tgaatcaata tctggcaaaa ggccgttaat aacgtttcaa cgcagcatcg
     1261 caatcctttc cctgggtgag cgatgctgcc gatggcgcag acttaagatc cccggtctta
     1321 cccgctataa ccccctcctt ttatcatcac ccaacgcctt tcgctgtaaa cggcggtttc
     1381 gcaaaccaaa ccaaaaccgt aagtaagata aaagcaatag ccgccatacg gaaaatctca
     1441 tttgcagaaa tagaaagtga ctgctgggtt atttcattat taatttcatt aagaactcct
     1501 gaaagcgaac cataatattt atccataatt tgtgacgatg aattaaacac ggggttaaat
     1561 tgatcgatgg ttgctgtcaa ctgactatgg tgtaacgatt cgcgtcgtcc ccacagcgtc
     1621 attgtcaacg acgtaccaac tgatcctgac aaggtacgaa aaaaattact catactcgag
     1681 gcattggcaa atttattatc tggcaagcct gaaaacgaaa tcgttgttaa gggtaaaaag
     1741 aaacaggcaa cggcgaatcc ctgaaaaaac tgcggcaaaa tgatgcctgt aaaatcaatc
     1801 gttggcataa atgtcacaga acgccagtaa tagcaaaccg catacatcaa aaaactaaat
     1861 gtcactaaca accgcatgtc tattttgttg ccataacgtc ctatcaaagg tgaaattaat
     1921 agtggcatga tgccgatggg cgcataagca agtccggccc atatcgcatt ataccccatc
     1981 gtttcctgga gtaactgcgg cataaggacg atcgctccag agtaaaataa atacgcgcat
     2041 gtgatactca caataccaat ggtgaagtta cgggacttaa acaaactgag atcaagaatc
     2101 gggttctctg aggtcgactc ccaaatgact aaagagatca gagaaataac tgatactact
     2161 gttaatatta ttattgtact cgagttgaac caatccagat cgcgcccttt atcaagcata
     2221 atttgcaagc caccaacacc gagcactaac agggtcagtc ctggtagatt cattttgacc
     2281 ggtgaagtct cagtttctct tcctttaagt aaggttaagc ataatgtcag gacgataatc
     2341 cccataggga cattgattaa aaatatccaa ccccagttaa agttatcaca aatataaccg
     2401 cccaatatcg gcccacatat cggagcgata atcacggtca ttgaccataa tgccagagca
     2461 aatgttcttt tttctggcgg ataattcctt aataataaac tctgtgacag tggaattaac
     2521 ggccccgcca ttaacccctg aacgactcta aaaaatatca gcacatcaag attggtcgat
     2581 aggctacaca ttaatgaaga cagcgaaaaa aaggttactg aaagtaaaaa taatcttaat
     2641 tcgcctattc tttgtgccaa cctgccagta acagggatcg caatggcatt tgctacacca
     2701 aacgaggtga taacccaggt gccttcgtct gttgatgctc ccagaaagcc agatattgtc
     2761 ggtattgcga cgttagaaat agtggaatcc aacatttgca taaatgtcgc taatgacaat
     2821 gcaatagtga cgcaccataa cgtcccaccg gttaatggtg ccggagttga tttagtgatt
     2881 gccattaaag ttgtccatta tgcgaaataa tgttgctaat ttctttttct atcggactgg
     2941 tatcgataac taaagcctta ctggtataag ccggcatgga ggtcacggtt gaagccagct
     3001 caggcatctc ggcaatgtct tcgttcttcg tatcaatagt tgctgtcatc gataaaccaa
     3061 tacgcaaggg atgttccatg agttcttttg gatcaagaga aacttcaacc ggtacacgct
     3121 gaacgatttt gatccagttc cctgtcgcat tttgtgcagg taataaggag aacgcattgc
     3181 cggttcccat attgatccct gtcacccgac catgaaacac aacattttca ccataaagat
     3241 cgctgataat attgaccgat tgaccaatcc gcacatccgt gagttgtgtt tctttaaagt
     3301 tggcattaac ccacatttga cgtgccggta cgacagccat taacgattgt ccggggctca
     3361 ctgtttcgcc gacctgaaca cttctctggg caatatagcc ggtaaccgga ctcttaatat
     3421 ccgtacgttt aagcgccaac caggcttctt tagttgcatc cgccgcttca acgacttgtg
     3481 gctgacggtt taatggtgtg ttcattacta aagctttatt cgctttataa gcctggatag
     3541 cggcattcaa tgccgctttg ctacttatta acgtatcttt ggtatgctcc agcgtttctt
     3601 ttgaaataac cccctgcttc gctaacggca ctcgacggtt ataatcttct aaagattgtt
     3661 gatactgaat acgtgctgaa gcgacttcgg cactgtattg tttatcctgt aagtatagtt
     3721 tattcgtttg ccgaacaata tttgccagat tatttttagc tttattgagt gcgatagtgg
     3781 catcagtttt atccagtgaa actaaaatgt caccttgtcg aacgtagttc gtatctttat
     3841 gattaacgac agtgacacta cctgagactt gtgcagaaat tggatctgca ttccccgtga
     3901 cataggcgtc atctgtacta atcatgtctt ctaattccat tgaccaatag gcataggcac
     3961 ctgaaaacgc aataaataaa actaccacca ataaagaaaa gtattttctt ctgttagaat
     4021 gttttttatt tgaattaatc tgttccacta ttatctctca tttctcatag atgaaattta
     4081 tgaattgaat gaaaagagca ttcattcttc atatcaaaca cagtgcatgt gttgcacatt
     4141 atcccaggaa cgttggaggc ctaatttaaa tgaggtgcaa aaaaaacaac agaggactaa
     4201 accgtggctt ttgcaataca attcttacgc ctgtaggatt agtaagaaga cttatagtgc
     4261 taacttgaaa ctataaatca tcggtacaac ccctgatttt attgttgaca tttcatttat
     4321 gccgactatt tatatggtat acttgtcgaa ttatcttaaa ggaagctcag attttcttat
     4381 ttttattgag aaaatgagat gacgccttat gtctgtatta ctacagggag aagggagatg
     4441 cttcattgca aagggaataa tctatgaacg caataattat tgatgaccat cctcttgcta
     4501 tcgcagcaat tcgtaattta ttgatcaaaa acgatattga aatcttagcg gagttgactg
     4561 aagggggaag cgccgttcag cgggtggaaa cacttaagcc tgatatcgtc atcattgatg
     4621 tcgatatccc cggagttaac ggtatccagg tgttagaaac gctgaggaag cgccaatata
     4681 gcggaattat tattattgtc tccgctaaaa atgaccattt ttacgggaaa cattgtgctg
     4741 atgctggcgc taatggattc gtgagtaaaa aagaaggcat gaacaatatc attgcggcta
     4801 ttgaagctgc aaaaaatggc tactgctatt tccccttctc tctcaaccgg tttgttggaa
     4861 gtttaacgtc cgaccagcaa aaactcgact ccttatcgaa acaagaaatt agtgtcatgc
     4921 ggtatattct tgatggcaag gataataatg acattgctga aaaaatgttc atcagcaaca
     4981 aaactgtcag cacttataaa agtcgcctga tggaaaaatt agaatgtaaa tcactgatgg
     5041 atctttacac attcgcgcaa cgtaacaaaa tcggctaatc acatgaagtt tttaccctat
     5101 ttttttcttc tctgttgtgg tctttggtcg accataagtt tcgcagacga agattacatc
     5161 gaatatcgtg gcatcagtag taacaaccgt gtcacacttg atccagtacg tctgagcaac
     5221 aaggaattac gttggttagc gagcaaaaaa aatcttgtga ttgcagtaca caagtcccaa
     5281 acggctacct tgttgcatac cgattcgcag caacgggttc gtggtattaa tgctgattat
     5341 ttaaatcttt taaaaagagc gttaaatatc aaattaacac tccgggaata cgccgatcat
     5401 caaaaagcaa tggacgcgct ggaagaaggt gaagtcgata tagtgttatc acatttagtt
     5461 gcttcgccgc ctcttaatga tgacattgct gcaaccaaac cactgataat tacctttccg
     5521 gcgctcgtca ccacccttca cgattcaatg cgaccgctta cctcatcaaa accagtaaat
     5581 attgctcgag tagcaaatta tccccctgac gaggtaattc atcaatcatt tccaaaagca
     5641 acaattatct cttttacaaa tttatatcag gcattagcat ccgtctcagc cggacagaat
     5701 gattacttta ttggtagtaa catcattacc agcagtatga tttcccgcta tttcactcac
     5761 tccttaaatg tagtgaaata ttataactca ccgcgtcaat ataatttttt cttgaccaga
     5821 aaagaatctg tcgttcttaa tgaagtactc aatcgatttg ttgatgcttt aacaaatgaa
     5881 gttcgctatg aagtttcaca aaattggctt gatacaggaa acctggcctt tctgaacaaa
     5941 ccattagaac tcactgaaca tgaaaaacag tggattaagc aacatcccga tttaaaggtg
     6001 ctggaaaatc cttactctcc tccctattct atgacggatg aaaatggctc ggttcggggc
     6061 gttatggggg atattcttaa tattattacc ttgcaaacag gtttaaattt ttctccgatc
     6121 accgtttcac acaatatcca tgccggaaca cagcttaacc ccggtggatg ggatataata
     6181 cctggcgcta tttatagtga agatcgagaa aataatgttt catttgcaga agctttcata
     6241 acaacgccat acgtttttgt catgcaaaaa gcacctgaca gtgaacaaac attaaaaaaa
     6301 ggaatgaaag ttgccattcc atattattat gagctgcatt cgcaattaaa agagatgtat
     6361 ccggaggttg agtggataaa agtcgataac gccagcgctg catttcacaa ggtcaaggaa
     6421 ggtgaacttg atgctctggt cgcgacacag ctaaattcgc gttacatgat cgatcattac
     6481 tatcctaatg aactgtatca ttttcttatt cccggcgttc cgaatgcatc gctttcgttc
     6541 gcttttcctc gcggagaacc ggaacttaag gatattatta ataaagcact gaatgcaatt
     6601 cccccaagcg aagttctgcg cctgacggaa aaatggatta aaatgcccaa tgtgaccatt
     6661 gacacatggg acctctatag cgagcaattt tatattgtta cgacattatc cgttttatta
     6721 gttggcagta gccttttatg gggattctac ctgttacgct cagttcgtcg tcgtaaagtc
     6781 attcagggtg atttagaaaa ccaaatatca ttccgaaaag cactctcgga ttccttacca
     6841 aatccaactt atgttgtaaa ctggcaaggt aatgtcatta gtcataatag tgcttttgaa
     6901 cattatttca ctgcggatta ctacaaaaat gcaatattac cattagaaaa cagtgactca
     6961 ccctttaaag atgttttttc taatgcgcat gaagtcacag cagaaacgaa agaaaatcga
     7021 acaatataca cacaggtatt tgaaattgat aatggcatcg agaaaagatg cattaatcac
     7081 tggcatacat tatgcaatct gccagccagc gatcatgctg tttatatttg tggttggcaa
     7141 gatattaccg agacgcgtga tttaattcat gcactcgaag tagagagaaa taaagcgatc
     7201 aatgcaactg tcgcaaaaag tcagtttctg gcaacaatga gtcacgaaat aagaacacca
     7261 ataagctcca ttatgggctt cctggaactt ctgtcgggtt ctggtcttag caaggagcaa
     7321 cgggtggagg cgatttcact tgcctacgcc accggacaat cactcctcgg cttaattggt
     7381 gaaatccttg atgtcgacaa aattgaatcg ggtaactatc aacttcaact acaatgggtc
     7441 gatatcccta ctttagtcca gaacacttgt cactctttcg gtgcgattgc tgcaagcaaa
     7501 tcgatcgcat taagttgcag cagtacattt cctgatcatt acctggttaa gatcgaccct
     7561 caggcgttta agcaggtctt atcaaattta ctgagcaatg ctctcaaatt tacctccgag
     7621 ggggcagtaa aaattacgac ctccctggtt cacattgatg acaaccacgc tgttatcaaa
     7681 atgacgatta tggattctgg aagtggatta tcgcaggaag aacaacaaca actctttaaa
     7741 cgctacagcc aaacaagtgc aggtcgccag caaacaggat ctggcttagg cttaatgatc
     7801 tgcaaagaat taattaaaaa tatgcagggc gatttgtcat tagaaagtca tccaggcata
     7861 ggaacaacat ttacgatcac aatcccggta gaaattagcc agcaagtggc gactgtcgag
     7921 gcaaaagcag aacaccccat cacactacct gaaaagttga gcatattaat cgcggatgat
     7981 catccgacca acaggctatt actcaaacgc cagctaaatc tattaggata tgatgttgat
     8041 gaagccactg atggtgtgca agcgctacac aaagtcagta tgcaacatta tgatctgctt
     8101 attactgacg ttaatatgcc gaatatggat ggttttgagt tgactcgcaa actccgtgag
     8161 caaaattctt ccttacccat ctgggggctt acagccaacg cacaggctaa cgaacgtgaa
     8221 aaagggttaa gttgcggcat gaacttatgt ttgttcaaac cgttgaccct ggatgtactg
     8281 aaaacacatt taagtcagtt acaccaggtt gcgcatattg cacctcagta tcgccacctt
     8341 gatatcgaag ccctgaaaaa taatacggcg aacgatctac aactgatgca ggagattctc
     8401 atcactttcc agcatgaaac gcataaagat ctacccgctg cgtttcaagc actagaagct
     8461 ggcgataaca gaactttcca tcagtgtatt catcgcatcc acggtgcggc taacatcctg
     8521 aatttgcaaa agttgattaa tattagccat cagttagaaa taacacctgt ttcagatgac
     8581 agtaagcctg aaattcttca gttgctgaac tctgtaaaag aacacattgc agagctggac
     8641 caggagattg ctgttttctg tcagaaaaat gactaaatag cggctcccac aatgttcaaa
     8701 tgtgggagct atttaccagc acatcttaca tttatgatga gaactcctgg cgaatttgtt
     8761 ccccatgctg gtcgagcgtt gccgctcccg gcataacatg cgggtccgcg cagccgctga
     8821 tttttatcgg attacccggc atcattattc ccccggcttc aatcaacata tttctcgcct
     8881 gagtttgtgg caatttaatg gcctcagcca cacttaataa cggcgcgacg ggtacaccaa
     8941 cttcatgtat tctggctaac caaacttcag ctgcctgcgt ttttaacgtc cgctcaatat
     9001 attgtttaag aatagcctgg ttttgtacgc gtaaaatatt gctgctaaat cggggatcat
     9061 taaccagttc cgtaagctcc agtgcctggc ataacgcaga aaaaagcttg tcattaccac
     9121 aacaaatcgt aatcggctta tcctgagtat tgaaaacatc aaaaggtgcc atgtagggat
     9181 ggcgatttcc cagacgttgt ggtgacttcc ctgtcgcgat atatgccatc agaccatgct
     9241 ccagaaaact cagcgtggca tcaaacatcg ctatatcgac atgcgcccct ctctggctct
     9301 tttcgcggcc ataaagtgca ctcactattc cgctgaataa atagacaccg ccgcatagat
     9361 ccgcaagaga tgtaccaacg cgcactggcg gagcatcagg atatcctgtt tccatcatta
     9421 tcccgctcat tgcctgaatg atggtatcgt aggcaggagc atcttttagc ggaccggtat
     9481 gtccgaaacc tgacgatgaa gcatatatga ggctcgggtt gatttcttga agcgtttccc
     9541 atgaaaaccc cagtttttcc attgtacctg ggcgaaaatt ctcagctaat acatcagctt
     9601 gtttgagcat atttataaat atacttttat cgtaatcatt ctttaaatca agaaccacac
     9661 tctctttgcc atgattaata aaactgtaat agagtgactg tccatccaca tagggaccaa
     9721 atgtgcgggt atcatcacca tgacccggcg gctcaacttt aattaccctt gcgcccatat
     9781 tacaaagaag ttgagttccg aaaggtccat taaggacatg tgtcatatcg ataactaata
     9841 agccttcaaa cggccctttg ctttcattat ttgtcatttg cttatgcctt gaaaaaagcc
     9901 gaaggtgaaa agacacttcg gcatttatgt aaaatcaata acatgattaa ttatgaaacc
     9961 agtcgactga cataaatcca caagggagcc gtgacgacaa agcccagtac gctcacagcc
    10021 aatgacgctg taccagtacg ggtgtagaca ttaaaccggc tggcaataat aattccggag
    10081 aatgccggcg gtaatgcgcc tgccagtacc atcatctgca gatgttcgct gttcaaatga
    10141 catgccatac caacgagaag cagtgccagt ggcatcagaa tcagcttcag gaaggtgtta
    10201 taagcaattt cggcactgaa ctcgaattta tgtgcagcca gagtcaaccc cgcagcgaat
    10261 accgctaccc ctgagttagc cttcgcaatc agattaaagg ttgggtccca tgctgccgga
    10321 atttttaccc caaccaacac caggatcgtt gccagaacag gtgcccatac tactggctcc
    10381 tttgccgcag aaattaatgc actcagatta ctattcttct taccatccgc tcctgaagaa
    10441 ggattcagca aatacagacc aataggaata gtaattgcgt taacaataat agaaataatt
    10501 gctaccacta aacctgttga tacggaatca ccataaatag gatcgagaac tgcaaaccct
    10561 aggaatccaa tggtaggtga acctgcaatt aatgcacata cagctgcttc tgcatgggta
    10621 cgtttaaaaa atttgtagca accgaaccag gagaaaaaga aacatccgac aataaccaca
    10681 agtgatacaa gggtcagacg agtgtccgca aaaatcattt ccctgtttgc ccgagtaata
    10741 gatacaaata gagccgcagg aagcgcgtag tttaatacca gtttattaaa tgcgcgggct
    10801 tgatcttctg aaaaagtttc tcgtctgccg ctaaaataac ccaacagcat gattacgata
    10861 ataggcaata aatcgccaat aaaaaatgtt agcataatag tatttccgat aagggtcccc
    10921 tcaccatcgc ataatgagtt ggcaagagga gacgatgtca gtatttaatt accagcgact
    10981 tgttttgggt taagtttggt aatatggcca ctttcagttc ctgctgcagg gtcgatgacc
    11041 acattaataa tggtcggttt gcgcgactga ataccggtgg ttaaagcatg acgaagttca
    11101 tctttcgtgg tgacgttata gccaacgcca cgaaacgcat ccattaattt gtcatacctt
    11161 gcatggtgca acagatccgt tggtgatggt gcaccagcgc cactgagatc aacaccgtct
    11221 cctctgtaga tgccgccatt attaaaaata acgatcgtca ccggcaggtt atatcgacaa
    11281 atcgtttcaa tttccatccc actgaaacca aaagcactat caccttcaat ggcgacaacc
    11341 ggagaaccag aagtcacgct agcaccgatg gcatagccca taccgatgcc catgacaccc
    11401 caggtaccac aatccagacg acgacgtggt ttatacatat caataatatt tcgtgcatta
    11461 tccagggtat ttgcaccttc attaactaaa taaatatcct ggttctcgcg caatacgtcg
    11521 cgcacagcac ttaatgcatt aaagtaattt aatggttgag tatctgtact taatttttca
    11581 tgcatttttt gtgcattttg ctgcttgtgg atatttaaaa tatcgcgcca taccagtgga
    11641 gtcgtaaatg tgttttgttt cagttctgcc agcatacctt gcatactgga tgcaatatca
    11701 ccaatgactg gcacagcaat ggggcggttg ctgtcaattt cctgcggttc aatatccagt
    11761 tgaataaact gtgtatctgc cgcccatcct tttttaccgt gtgccaataa ccaattcagt
    11821 cgtgcaccaa caagcatgac aacgtcagca tttgccaggg caaacgaacg cgcagctgcc
    11881 gcagaaagtg gatgcgtatc ttcaaggatc cctttcgcca tagacattgg caggaatgga
    11941 atctgagcac tttcaataaa ttcacgaagc tgttcatcag cttgtgaata cgccgcgcct
    12001 ttgccaagga taattaatgg ccgttcagct tttgctaaaa gcgaaattgc gctagtgact
    12061 gacttcgggc atggcaataa tgctggcgac ggattttcaa ctttaacaat cgtggttaac
    12121 gcttcgtctt tttccatcgt cgcggccagg acatttgctg gcaaatcaag ataaactccg
    12181 ccagggcgac ccgatacaga gacccggata gcgcgtgcca atgcaatgcc aagatcctgc
    12241 ggctgattaa cgcgaaatgc tgctttggca tacggttttg ccgcattcat ttggtccagc
    12301 tcttcataat caccttgctg taggtcgacg atcgcgcggt cgctggagcc gctaatcatg
    12361 atcatcggaa aaccatttac cgttgcgttg gccaatgccg tcaaaccatt gaggaatcct
    12421 ggcgcagaaa ctgtcaggca gatccccggt ttttgggtaa gaaaaccgct tgccgcagcg
    12481 gcatagcctg ccgactgctc atgacgaaaa ccaatataac gaatgccctc cgcctgggca
    12541 tggcgtgcca tatccgtcac aggaatacct acaacaccat aaatagtgtc aatattattc
    12601 tgttttaatg cttcaacgat gatatgcata ccatctgtca tttgaagttg atctgacatg
    12661 attaataacc tcgaaatttt tataaattgg gagccagaag cccccgttaa tatcagatgg
    12721 cgtggttttg cttcattgca gcaatttcat cgtcgctata acctagctcc tgcaatacaa
    12781 cagcggtatg ttcacctaat agcggcgcag ctttaatatc cggcgtaaaa gcagagaatt
    12841 tcattggaca accaacggtc agatattttc cacgcaacgg ttgttccact tcaacaacac
    12901 tgccactttg gcgcaaagag ggatcaagtg aaatttcttt catacttaaa accggtgcac
    12961 aaggaatatc aaactgagtc aaataggcca ccgcttcatg tttatcaata gtgacagtgt
    13021 atttttcgat ttcagcaaaa atatcgaaaa tatgtggctg tcgggcatgg gctgtactgt
    13081 atgccggatc ggtaatccat tctggtttgc cgatggcttt acaggtgttt tcccagtttt
    13141 gctcctgaat agtgaaataa atataggcgt taggatcggt ttcccagcct ttacatttca
    13201 ggatccagcc aggctgaccg ccaccacctg cattaccacc gcggggaact gcatcaccaa
    13261 atgtaccatt cggatactgc gggtattctt ccagataacc caatttatcg agacgctgct
    13321 ggtcacgtaa tttcacgcgg caaaggttca atacggcatc ctgcattgac atggtgactc
    13381 gttgcccacg ccccgttttt tcgcgatgca gcaaagcagc aagtaaaccg atcagcaaat
    13441 gcattccggt gttgctgtca cccaacgctg cagcgcttac cagcggcgga ccatcccaaa
    13501 aacccgtagt ggatgccgcg ccacccgctg cctgagcaac gttttcatag gcttttacat
    13561 tcacataagg cgaacactca tcaaaccctt tgatcgaacc aaaaatcaga cgtggattga
    13621 tttcttgaat atgctcccag gtgaagccca tgtgatcaat ggcccctgga tgaaagttct
    13681 cgactaagat atcagcttcg cggatcagct tttccattac ctctttgcct tccgctgttt
    13741 tggtatttaa ctcaatagaa cgtttgttac tgttaagcat ggtgaagtaa agcgcatcga
    13801 tatcaggaat atctcgcagc tggtgacgcg ttacgtcacc aacgccggga cgttcaattt
    13861 taataacgtc agcgccaaac caggccagca tttgagtaca agatgggcca gattgcacac
    13921 cggtgaaatc gagaacttta attccttgaa gtggagttga catagcaata cctattagtt
    13981 aattaaatat gtgttaattt agcgtttatt taaggcgtaa tatcttctat aaatagcccg
    14041 caaaatatcg tcgtagctgc actcgatatt tttaaaatcc tgtatcaagt gctgaaaatc
    14101 atttcatcgc cacttccaat tcctttctgc atggtaagta gtgaggacga aaagaagaat
    14161 atgataaata ttaattcgtg gtaatcagag agagtcgcga catttgtgat gttattctta
    14221 caactgtaag aagcgccggt gatttacaag taagggtatg attacgcttt ttaaagcgta
    14281 ccataaaaca taacataata aatgatttgt gatgacacgg gattattggg gtttactttg
    14341 aggaagataa aatgcgtgtt tatagaaccg cgagcgccaa ataattttat gaccacaacc
    14401 tgtcgtattg tggtcataaa aaattgtcgg ctggagggag ttaaatcctt tacctcaata
    14461 tactgcctgt cagcattagt tcacaaacag tgcttcgctg tcgacgatga ttccatcttc
    14521 cgcaccttta agcgccaggt ttgcctcgta gtattgcttt ttatcaagca gtttctgcgc
    14581 atcagcaagt gcattacgag tctgtttaag cggcatcaga tattggtttt ccattacgcc
    14641 aacaccggcc aggcgaagtt cttccattgc gcccttttta tcccctttcg ccattttttc
    14701 attggcaatt tttatcgcgg cttctttttc gggagttgct acataactct cagaaattcc
    14761 gacagatgca ttaatgacaa tatattggtc atcattgaga ttggtctttt tacctggctt
    14821 agcgaacttt gcccattcgg tactgtcatc tgacagcaaa gcggaagctt cattggtcag
    14881 ttcttttgcc ttttctggat cgccatgaaa cagagccagg cgcgctacct gcacgtcacg
    14941 catcgcatat aaaccttgtt cagagatacg ctctgctgct gccgttttct gggtttgctg
    15001 aacttgctga gtttgctgtt gtgccgctac cggtgcatta tcagcagccc atacagttga
    15061 agatgccaga attgctgtga ccatcgtagc cataattaaa cgtttcatac ttacctcatt
    15121 ctttaacagt tttagaaaac gccgccatca tattgggtga gcatgaaatg agaaatcaga
    15181 gagcaacggt cattttgaaa gggttatctt acagttgtag ttattatcgc aagaagtatt
    15241 ttagtcttac aattgtagga atctgcttcc tgtcgcagag aactattctt atgtaccaca
    15301 aagagatgtc atttattata tcgatgtaaa tattgattaa ttatatgtaa atacagccat
    15361 aacatcgtag gttctcagtg aaccattttc aggataactt tctatgaaag taaacttaat
    15421 acttttcagc ttatttttat tggtctctat tatggcatgc aatgtttttg cattttccat
    15481 ttctggtggt gtaagtgaga ggagctataa agagactgaa aaaacatcag cgatgacgac
    15541 cacacactct acaaaacttc agccatcaca ggcgattttg tttaagatga gagaagatgc
    15601 gccaccatta aacctcacag aagaaatcac gcctacttat ccgacaaagg cgaattatct
    15661 tattcatcct gtgcgatagc gtctgtcaca tggcaggtga acaatcatgt ctgatgctga
    15721 tgtgaacacc tgcccaaatg agccatcctg acccactatc gcctgccata ccccaccata
    15781 aagcgaatca tcaagccaca agccggggca agaaacataa atatccccgt cactagttca
    15841 ttaccgccag ttaaccacat ggtgaagtaa taaatgagtg cagcgaggat caccatgccg
    15901 aagaaagaag agaccgccga taccacgttc agtacctgac cgatgtagcc gcttacgcag
    15961 acaatacaca gggcgagaaa catccataaa taaatcatag ctcaacctcc tgccgcgcta
    16021 aaaaacctgt aacttcagtc actttaatag taagacaatc cttaacctct ggcaattttt
    16081 gctaagcatc aatgaaaaca gcatgttaaa tgcaagactg ttgtgtacgg aaaaatattt
    16141 actttgcacg attaataatc agtagctgaa agcagtcagc gagtgataaa gtacagatac
    16201 cgcattcatg ctcctcgtgg ttatgtcctg actagtcttt acactcttta caggaaccat
    16261 tgtcgtacat gatggcccaa ccaattgagt gtaccgctgt cgacatggaa tcttctgcga
    16321 tacaacaatt cgtatctaca gaaggtaact atgtttccac aatgcaaatt ttcccgcgag
    16381 tttctacatc ctcgctactg gctcacatgg tttgggcttg gtgtactctg gctttgggta
    16441 cagcttcctt atcctgttct ctgctttctc ggcacgcgta ttggcgcaat ggcgcgacca
    16501 ttcctgaaac gtcgtgaatc tatcgcccgt aaaaacctgg aactttgttt cccgcagcat
    16561 tctgcggaag aacgcgagaa gatgattgcc gaaaactttc gttcactcgg catggcgctg
    16621 gtagaaaccg gcatggcatg gttctggccc gacagtcgcg tacgtaaatg gtttgatgtt
    16681 gaagggttgg ataaccttaa acgcgcacaa atgcaaaatc gcggcgtaat ggttgtcggc
    16741 gtccatttta tgtcgctgga actgggcggc cgcgtgatgg gactgtgcca accaatgatg
    16801 gctacctatc gtccacataa taatcagctg atggaatggg tgcaaacccg tgggcgcatg
    16861 cgctctaaca aagcaatgat cggcagaaat aatctgcgcg gcattgtcgg tgcactgaag
    16921 aaaggtgaag cggtatggtt tgctcccgat caggattatg gtcgtaaagg cagctccttc
    16981 gcgccgttct ttgcggtgga aaatgtcgcc acaaccaatg gcacctatgt tctctcccgt
    17041 ctctctggcg cagccatgtt gaccgtaacg atggtaagaa aagcggatta cagcggatat
    17101 cgtttgttca tcaccccaga gatggaaggc tacccgacag atgaaaatca agccgctgcc
    17161 tatatgaaca agattatcga gaaagagatc atgcgcgcac cggagcagta cctctggatc
    17221 cactgtcgct ttaaaacgcg cccggtggga gaatcgtcgt tgtacattta acaaactgct
    17281 cttactcttt ccctcctcaa atcggccata ataaccccat gatttttatg gcttttttct
    17341 taaggttttt tccttcgctg aatatctaat tattaccgtc agaaattaaa ctgtcgccga
    17401 tatgagacac ttgtaagtta ctaaaagtaa ataagaaaat gcctcttgtc tcgtttcagt
    17461 tttaggcgta cattagcgcc gtctcgagca gtttagctca gaattctggg gtgatgccca
    17521 cggtaaaata cagggctttt aaggtcgctt tgcccggtgt caactcactg tatcaggtgt
    17581 aatgaagtca ttcaggcgta acagcaatta cgcggagaga tgtaaagtga aatatttctt
    17641 tatgggcatt tcttttatgg tcatcgtttg ggccggtact tttgccctga tgatctaaaa
    17701 gcaaactgtg caatgaaaaa caggagccat caggctcctg tttgcatttc tgacgacggt
    17761 gtttattccg cgttttcgtg aatatgtttg ctgctggcgg gtagtaaacc gtcggcacgg
    17821 aacatcgctt taatccctct gatggcctga cgaatacggt cgcggttttc aatcagtgca
    17881 aagcgaacat gcgtatcacc atagtcgcca aagccaatcc ccggcgagac acagaccttc
    17941 gcttcgttaa gcaatttctt ggcaaatacc agcgagccca tggcagcata cggttccggt
    18001 attttcgccc agacatacat cgaagccttc ggcatttcaa ctatccagcc cgcttcatgc
    18061 agccctttaa ccaatacatc acggcggcgt ttgtactgtt cggcaatgtc gcgcacgcac
    18121 tgttgatcgc cctccagcgc cgcaatcgcc gccacctgca acggcgtaaa ggtgccgtaa
    18181 tcgtgatagc ttttaatacg agccagggcg ctgaccagcg ttttgttgcc aaccataaag
    18241 ccgatacgcc agcccgccat gttgtagctt ttcgacagcg taaagaactc gactgccaca
    18301 tcgcgtgcac ccggtacctg catgattgac ggcgctttcc agccatcgta gacgatatcg
    18361 gcataggcca ggtcgtggac caccagcaca tcgtagcgtt tcgccagcgc cacaaccttt
    18421 tcgaagaact ccagctccac gcattgcgcg gttggattcg acgggaagcc gaggatcatc
    18481 atcttcggtt tcggataact ttcacgaatg gcgcgctcca gttcgttgaa gaaatcgaca
    18541 ccttccacca gcggcactga gcgtacctgc gccccggcaa tcaccgcgcc ataaatatgg
    18601 atcgggtaac ttggattcgg caccagcacc atgtcaccat gatccagcgt cgccagcatc
    18661 agatgcgcca ggccctcttt cgaaccaata gtgacgatgg cttctgattc cgggtcgatt
    18721 tcaacgtcgt agcgatcctg ataccagcgg gaaatggcgc gacgtaaccg cggaatgccg
    18781 cgtgaagtgg agtaaccatg cgtgtccggg cgctgggcca cagtacataa tttttcgacg
    18841 atatgcggcg gagtcgcacc gtccgggtta cccatgctga aatcgataat atcttcgccg
    18901 cgccgacgcg cagccatttt cagttcagcg gtgatgttaa aaacgtaggg cgggagacga
    18961 tcaatgcgcg taaagcgacg ttcagggcga gtgtcagcca taatttcctc agattaacgt
    19021 tagcgcccgg accgtccgag cgacgctgcc acaatggtgg ctgttttgaa aatagcctga
    19081 ttaatttctg tctgtccagc gttttagaac atttttatca atggctttaa atgaggaact
    19141 ccacttcaaa aacaggaaat ttttctacgc taacaagaaa attaccacca attttattaa
    19201 cattataatt tcaataaatt taccagtcag aagtgcatta tcaagagata cattgctaat
    19261 acaccattta tctttcaatc cccttttaaa tttatggttt ttcctcaaaa acggcctgct
    19321 ggtcatcagc cttcaggtta cctatcatag aggtttaatc cttattcaga gtcacccgtg
    19381 cacgaaatat tcaacatgct gctggcggtc ttcgatcggg cagcgttaat gcttatctgc
    19441 ctgttctttc tcatccgtat ccgcctgttt cgcgagctgt tgcacaagtc ggcacactcc
    19501 ccaaaagagt tgcttgctgt taccgccatt ttctcgctgt tcgccctgtt cagcacctgg
    19561 tccggcgttc ccgtagaagg ctcgctggtg aacgtacgta ttatcgcggt gatgtccggc
    19621 gggattctgt ttggcccgtg ggtaggcatc attaccggcg tgattgcggg tattcaccgg
    19681 tatttaattg atatcggcgg cgtgacggcg atcccctgct ttatcaccag cattctggcg
    19741 ggttgtatat caggctggat aaacctgaaa atccccaaag cacagcgctg gcgcgtcggt
    19801 attctcggcg gcatgttgtg tgagacgttg accatgattc tggtaattgt ctgggcacca
    19861 actaccgcgt tggggatcga tatcgtctct aaaatcggca ttccaatgat cctcggtagc
    19921 gtctgtatcg gctttattgt gcttctggtg caaagcgttg agggcgaaaa agaggccagc
    19981 gccgcgcggc aggccaagct ggcgctggat atcgccaaca aaacgctacc gctgtttcgc
    20041 catgtcaata gcgagtcatt acgcaaggtc tgcgaaatta tccgcgatga cattcacgcc
    20101 gatgcggtgg cgattactaa taccgatcat gtgctggcct atgttggcgt gggtgaacat
    20161 aactatcaga atggcgatga cttcattagc ccgactaccc gtcaggcgat gaattacgga
    20221 aaaatcatca ttaaaaacaa tgatgaagcc caccgcacac cagagattca ttccatgctg
    20281 gtgatcccat tgtgggagaa aggcgttgtg accggaacgc tgaaaattta ctactgccac
    20341 gcgcatcaga taacctcgtc attacaggaa atggcggttg gtctgtcgca aatcatctcc
    20401 acgcaactgg aggtttcacg cgccgagcag ctacgtgaaa tggcaaataa ggcagagctt
    20461 cgcaccctgc aaagcaaaat taatccccat tttctgttta acgctctgaa cgctatttca
    20521 tcgtcaatcc gtctgaatcc ggataccgct cgccagttga tctttaatct gtcgcgttat
    20581 ctgcgctata acattgaatt aaaagacgat gagcaaatcg atatcaaaaa agagctgtat
    20641 caaattaaag actatattgc cattgagcag gcccgctttg gtgacaagct gacggttatc
    20701 tatgatattg atgaagaggt gaattgctgc attcccagcc tgctgatcca gccgttggtg
    20761 gagaacgcca ttgtccacgg tattcagcct tgcaaaggta aaggcgttgt caccatcagt
    20821 gttgcagagt gcggaaatcg ggtacgcatt gcggtgcgag ataccgggca cggcatcgat
    20881 ccaaaggtga ttgagcgggt cgaagcgaat gaaatgccgg gcaataaaat tggcctgctg
    20941 aatgtccatc atcgcgtgaa gttattgtat ggcgaggggc tgcatatccg ccgcctggag
    21001 ccggggacgg aaattgcgtt ttacattcct aaccaacgca ccccagtcgc ctcacaggct
    21061 acgttattgc tttgagccgg agtgatattg tgaaagtcat cattgttgaa gacgaattcc
    21121 tggcacaaca ggaactgagc tggctaatta aagagcacag ccagatggag attgtcggca
    21181 cctttgacga cggtctggac gtgttgaagt ttttgcagca taaccgcgtc gacgccattt
    21241 ttctggatat caatattccg tcgctggatg gcgtgttgct ggcgcaaaac atcagccagt
    21301 tcgcccataa accgtttatt gtgttcatca ccgcgtggaa agaacatgcg gtagaagcgt
    21361 ttgaactgga ggcgtttgac tacattctca aaccgtatca ggagtcacgt attaccggga
    21421 tgctgcaaaa actggaagcg gcctggcaac aacagcagac cagcagtacg cctgccgcga
    21481 cggtaacgcg tgagaatgac accattaatc tggtgaaaga tgagcgaata atcgtcacgc
    21541 caattaacga tatctattac gccgaagcgc acgagaaaat gacctttgtc tatacgcggc
    21601 gtgaatccta cgtaatgccg atgaacatta ccgaattttg cagcaaactg ccgccgtcgc
    21661 attttttccg ctgccatcgc tcattttgtg tcaatctgaa caaaatacgc gaaatcgaac
    21721 cgtggtttaa taacacctac attctgcgac tgaaagatct ggattttgaa gtgccggtca
    21781 gccgcagcaa agtgaaagaa tttcgccagt taatgcatct ttaatcggga actttcatga
    21841 aagcaccagg cttgcccgcc gatcaacaat ttttcgccga tctgttcagc ggcctagtgc
    21901 ttaacccgca actactgggg cgcgtctggt ttgccagcca gcctgcctcg ttaccggtgg
    21961 gcagtttatg tattgatttt ccccgtctgg atatcgtgct gcgcggcgaa tacggcaacc
    22021 tgctggaagc aaagcagcag cgaatggtgg aaggagaaat gctgtttatt ccggcacgcg
    22081 cggctaattt accgatcaac aacaaaccgg tgatgctgtt aagcctggtg ttcgcaccga
    22141 cctggcttgg gttatcgttt tacgatagcc gcaccacgtc gttgttgcat cctgctcgcc
    22201 agatccagct tcccagcctg caacgcggtg aaggtgaagc gatgcttacc gccctcactc
    22261 atcttagccg ttcgccgctg gagcagaata tcattcagcc actggtgtta agtttgctgc
    22321 atctttgccg caacgtggtg aatatgccgc cgggtaattc gcaaccgcgc ggcgattttc
    22381 tctatcacag catttgtaac tgggttcagg ataattatac ccagccgctc acccgcgaga
    22441 gcgtggcgca gttttttaat atcacgccca atcatctgtc aaaactgttt gctcagcatg
    22501 gaacgatgcg ttttatcgag tatgtgcgtt gggtgcgaat ggcgaaggcg aggatgattt
    22561 tgcagaaata tcatctgtca attcatgaag tggcacagcg ttgcggtttt ccggatagcg
    22621 actatttttg tcgcgttttc cggcgtcagt ttggtctgac gccgggagag tacagcgccc
    22681 gttttcaggg ctaacgtcag aaggttaatt ctgtttccag cagcgtcagg atactttgtg
    22741 catcttgcgc ggcaaacaac gactggcgga agtttttatt caccagttta cgcgccagct
    22801 gcgagaagac tttcacatga ttcatccctt cgttagcacc cagcgtcagc atgatcacca
    22861 gttcgacttc gcccatttct gactgccagt caatcggttt cgccagccgg gcaatgctga
    22921 tactggaatg acggatccac tgagatttgg tgtgcgggat cgctacgcca aaaccaacgc
    22981 cggtggtaac aatctcttcc cgctgccaga catcttcttc cagctcaaac ggatgttcag
    23041 tgcgcccgtt aacgccgagg ttgccgcaca ggaactggat cgcctgctct ttattgctaa
    23101 aatcctgatc aacaaagata ttctccagcg ccagcagtgg gcgaacgtct tcttccggcg
    23161 taaaggcggt gagtaacgct tcaatttcct gcgcactgcg gcattcacat gcctgacgcg
    23221 ccagttcccg acacgcctcg ctatccagtt gacgaagctg gcttttcacc gccggaatac
    23281 gcgggctact catactcagc tcatccaggc ccagcccaag cagtagcggc agataacggc
    23341 tttcaccgcc cagttcaccg caaatgccta cccatttgcc ccgctgatgc gcagtggtaa
    23401 ctatttgctg caacatgcgc aggaacgatg gcgtaatcgg gttatatagc ggcgatacgc
    23461 gcgggttatt acgatcgacc gcatacagat actgggtcat atcgttggag ccgatactga
    23521 agaaatcgac ctcatcgcag aagtggtcga tgatgtagca caccgacggc acttccacca
    23581 tgatcccaag cgtaatcgtc tctgcatgac gcaggccatc gcgcttaagc tcaacgatcg
    23641 ctttttggat ctcgcccttc acccataaga tctgatcgag actgtggacc atcgggatca
    23701 tcaactgggc gttgccaaaa ctggcggcgc gcaaaatcgc ccgtagttga gtgcggaaca
    23761 ggccagcaaa ttccgggtaa atacgtaccg cgcgatagcc gaggaacggg ttctcttcct
    23821 ggggaatatt cagataagga atgcttttat cgccaccgat gtccattgtg cggaagataa
    23881 tcggcttgtc gcccgctgcc agtagcacct gctggtaggc ttcaaattgc tcctgctcgt
    23941 ccggcgcgct gtcgcgatcc atatagagca tttcagtacg gaacagtcca acgccttccg
    24001 cgccgttggc aaacgcgcct ggcgcttcca gagcggtgcc gatattcgcc gcaatatcaa
    24061 tacgcttgtt atcacgggaa taggccagct gcgcggcggc ctgcgcctgt tgtttttggc
    24121 gtttatccgc cagcgtctgt gcgacctgat aataaccgct caccgcgtca ttcgggttaa
    24181 tcgccagcac gccgcactgg gcgtcaagcc cgccggttgc ccggcataac gggcaatcgc
    24241 atccagcggc aggccgctca gtaccgggat cgccgaggcg cgggccagaa tcagggtatg
    24301 cgaggtgcgc ccagttttct ccagaatcat gcctgcaaga ttttttaaat cgaggctcaa
    24361 aaactggctt ggggttaaat cctcggctac cagaatagtc ggtttttcca gcaccagatt
    24421 gttgcgcggc ttcagttccg gccaggtgat atgcagcaac tgttcgctaa tatcgcgaat
    24481 gtcgctaaca cgttcgcgca gataatcact ggcagaagca gaaagtttgg cgcaaacctg
    24541 ctccatattg ctgatgatcg ccgcccccag cccttgatgc tgttctgtca tcagacgacg
    24601 gatattgccc gcgaattcat catcctgaat cagcgacaaa tgggcgctaa ggatagtttt
    24661 gctttcgccg tcacgctcac gcaattgctg gttcagttgc tcggcaagcg ttgcaaggct
    24721 gtgctccagc cgggtggaat cttgcgcact ggcggggatt gcccgataac tgtcgaggct
    24781 gtcgctttgt aacagggtca gcgtacccac gccgacgctg cttgccagca cattgccgta
    24841 cagtaaatcc gggttcaggc ggcttaatga acgcggcagc ggatgcgccg tcagttctgc
    24901 ctgcgttggc tggatgctgt cgctgtcgat aaagcgcacc tggatgtact cttccaacac
    24961 gcgcttcgcc tgctcttcat cgctgccgct aatgttcagg ctgcaactgt cattaaataa
    25021 agtaccggtg ccaatcagcg ccagcgagct tttcgcatcg gcctttgcgt tctggcgatg
    25081 gttgataaag gtgatttcgc tttgccactg gctgcactgt tctttaagtt cccacgccgg
    25141 acgagcatga agaccgtttg gcaaaggaca gagaaattga atcgttaaca taaccgctcc
    25201 gggttaatca ggagatcatc tgaaatccgt cagttgaaca accgtctcac gcgtaagacg
    25261 tttaataagg gcagataaaa gctgctgcat ctgcaaaatg tcacggcaat cggcaatcgg
    25321 caatcgatgc ggcgcaatgt ccgtggcggg ttgctggccc catcaccact gtaggcacgc
    25381 cggtgccggt taagtgcacc gctccgccgt ccgtgccgcc gttgctgaac atatctgcct
    25441 gtaacggcac gccaatttct gccgccacgg tttcgatcca cgcggtaagt tttggcggcg
    25501 caatcagcga cttgtcgctt aacaccagca tcggcccgtt acaaatctga cgatggttag
    25561 ccgcgccata atcaaagttt ttcgcccagc aggcggtatc aagcacaatg gcgacatccg
    25621 gcgacaccgc gcgggtggca gtttgcccgc cgcgtacccc cacctcttcg ctggaactgg
    25681 ccaccagcca cacttccgca ggcagttcag cgctgtgtag ttcgcgcagt aacgtcacca
    25741 gcaggtagca accgaggcgg tcatcaaagg ctttccccat cacccgctgg tgagggagaa
    25801 cctgaaaagt tgtatcaaag gtgacgcgat cgcctggacg aattcccgcc tgcatcactt
    25861 cgtcatacga gcgcgtacca atatccacgc gcatggcgct gacgtcattc ccctgccggt
    25921 cgccgtcaag caggcctgga attttgcact cttcacgggt ggtgatgcgc accggctgca
    25981 gctggcgggc agccatgcgc acgttgccaa ccggcagcac atcaattgcc ccttcgcggg
    26041 agatgctgcg caccataaat cccacttcgt ccatatgggc gcagatcatc accttcggcc
    26101 ctgtcgattc attgaggcgg atccgcaccg atcccagacc atcaaatcgc acttcttttt
    26161 gcaggcgatc cgcttcttcc agcaggatct gccgcacttc ctgttccgag gaggcgatcg
    26221 catctgcctc gctcaacgct tttaatagcg ataaatccat tatgcctctc ccgtgagcaa
    26281 cactgttttc ggcatggcgt agagcacttc tgcgccttgc ggggtaacca gcacaacatc
    26341 ttcgatgcgc acgccccctt gccctggcaa ataaatcccc ggctccacgg tcagcaacat
    26401 gcctggctgt agcgtcttgg tcccccgcgg tgaaaaacgc ggatcttcat ggacttcaat
    26461 gccgatagcg tgaccagtgt tatgaccgaa atagtcgcca aatccagcct cggtaatgac
    26521 ccggcgcgcg gcgtcgtcaa tctgctggca gcgcacgccg gggcgaattg cagagattgc
    26581 cgcgagctgt gcctgcagga caatctgata gacgtcaaac agcgggtgag attcggcgct
    26641 caccccttcg ccattcacca gcaaggtgcg cgtcatatca gagcagtagc cctgatacag
    26701 cgcaccaaaa tcgagagtga caaactcgcc cgctgcaaca atcttgtcgc tggctttgcc
    26761 gtgcggcagc accccgcgcc agccgctggc gacaatggtg tcaaaagagg ctttttctgc
    26821 gccctgctgg cgcataaacc actccagttc agcggctatc tcgcgctcgc tcatccccgc
    26881 ctgaataaag cggcgaatat gctccgctcc gcgatcggca atcccacagg cgaggcggat
    26941 tatctccacc tcctctggcg ttttgatttg ccgcagcaca tccggcgtgg cgctaaccag
    27001 tttcgcattg agttcagact tccagcggtg cgctgtttcc caactcacct gctggccttc
    27061 aaaaccgagc gtttgcaact gctcatcggc aatgatttga ttgacgatag tggtaagcgt
    27121 gttcgtcgcg tcaagcaaat gcagctggta gccttgcgca cgggcttcca cctcaacgaa
    27181 atagcgcgaa tctaccagaa tgtgcgcact ttcacggcta ataaccacat agcctgatcc
    27241 ggtggagatc cccagatgcg gctgtttgtt ctgccgtgag gagagaagca ctgcatccag
    27301 ttgttgcgcc ttaagccagt cgcgcagcga agcgagtaat gtcatctgga ttttccttct
    27361 tacaggctat cgattaacaa tttgccttta cggaacatca tcagacgcag gaacaccacc
    27421 atcagcgcag ttatgactgc ccccagcgcg atccccgcca tatagacgcc aaggttagtg
    27481 accagcggcc atgcccagat agcggattcc gggaaccatt gcactgcgcc cagccagaca
    27541 gcggcggttg agccgacaat cgcgccgacc atatacgacg gaatggcggt gatggggctt
    27601 tccagcgcaa acggaatcgc accctcacta atccccataa aggcaaggaa catcgcggtc
    27661 ttaccctgcg gataaagttg agcgttgaac aggcgtttgc cggttaaacg acggtcaata
    27721 atggtcgcca gccccagacc aatcggagga ataacgatag cgatagaacg agcggtgacc
    27781 ggtaatacgt ggtcagtggt aaagctgaag gcaacgaaac ctgcggcttt gttgatcggg
    27841 ccaccaaggt cgattgctgt cgccgcggcg atccccattg cgtacatcag cgcgcccttc
    27901 tcacctgcgg cagtcagcac ggtacggata ccgccgttga tccagccgcc aaagggggta
    27961 atgacgtagt acatcgccag catgacaaaa atggcggaaa gaatcggtag caaaaatgtg
    28021 gttttgaacg ctaacaggaa atccggtaac tggattttct ggttcatcca cttcacaagg
    28081 taacccgcga cgatagaaat aatcagcgca ccaatgaagg tggacggcac cggcgaagag
    28141 gtcgcccatt gcatagtgct gggatcgaag ttcagcagtt gcgtcggctg ggtagacatc
    28201 aagccgccga taaaaccagc cgggaacgcc agtttgccac cgatagagtt cgccacaaaa
    28261 gcagcaaaca tcggaatggc aaaaccaaac aacacgccgc cgaaggactg cgacagccag
    28321 gcaaatttca gtaaggagag gtcgaaaccg gagaatttcc cgctattaag agcatccatg
    28381 atgccgatct cagcaggaat tttaagccag ctataagcaa tcagctggct gaaagcgagg
    28441 atcacaccgc ccataattaa ggtcggcacc atgcgtgaaa tccctgacat cacatgctgc
    28501 gggagttcac cccagaagct gcttttagag gcctgcggat tcttaactgc cgctgccgca
    28561 ccggatgcgc caggcacaac ggttgcactg cgttttttaa tggccataac aattatccct
    28621 gtcgaatatt actgttgttc agaggcaatc atctcttcga tttctttgat gatgcccgca
    28681 gcgtttttaa ttgcgtcctg caaagtgatt tcataaacgt cgcgtgattc gaaacgctca
    28741 ttatcttccg gggtaactgc cacggagtgg atgatgatgg ttgcttcggc gatatcctgc
    28801 gccgtcaggc gattctggat accgtccgcg ccctgggttt caattttcac ttcataaccg
    28861 gcttctaccg ccgcttcttc caacgcctga gcggccataa aggtgtgagc taggcccatt
    28921 gggcaggcac ataaggcaat cagtttctta ctcatcgtta attcctcatt cagtgatagt
    28981 tgacgagtga aattatgaac gtgcaaaaca aatcgccgtt accagacaaa taatgcattt
    29041 actggagaat taatcccgct gtacggaagt gtgacgcagg tcggccttgt gaggggacac
    29101 aaagaaaaat tgaattaact gtatgattta aaagattatc gggagagtta cctcccgata
    29161 taacaggaag gatttacaga atgtgcccta aggtctggcg taaatgtgca ccggaaccga
    29221 gaagacccgg attgtcatgg acgatgagat acaccggaat atcatggaca tattctttaa
    29281 agcgcccttt atcttcaaat gcagcacgga aaccagaggc tttgaagaac tcaaggaagc
    29341 gcggcacgat accgcccgca ataaacacgc cgccaaatgt cccgagattg agcgccagat
    29401 tgccgccaaa acggcccata atgacgcaaa acagcgacaa cgcgcggcgg caatcggtac
    29461 agctgtcagc cagcgcgcgt tcggtaatat cttttggctt gagattttct ggcaggcggt
    29521 tgtcagcttt cacaattgcg cgatacaaat tcaccagccc agggccagaa agcacgcgct
    29581 ccgccgaaac atgaccaatt tccgcacgca atatttcgag gataatggcc tcttcttcac
    29641 tattcggcgc aaaatcaacg tgaccgcctt cgcccggcaa gcttacccaa cgcttatcga
    29701 catggaccag atgcgcaacc ccaagccctg ttccggcacc gtaaaccgca ataggtttac
    29761 cttctaccgg ttctgcgcca ccaaactgaa tcagatgctc ttttttcagc atcgggatcg
    29821 ccatcgatac agcggtaaaa tcgttaataa tttccagatg gctaaaaccg agattctttt
    29881 tcatttcggc aattgagaac gcccaggtat ggttggtcat tgccacccag tcaccggtaa
    29941 ttgggcaagc gatggcaata cagccgtctt tcacctcgac cttatgttct tcaagataaa
    30001 cgcgaatgac cgcttcgagg ctggggtaat caagccctga ataggtctta gcctgcgaga
    30061 tttcaccact ggcaatatca cacagagcaa gacgtgcgtt ggtgccgccc acatcaccga
    30121 ctaatgcata ctttatcatt cttcaactgc tccgctaaag tcaaaataat tctttctcac
    30181 actgtaaata cctgggggca taacaacaac gccggaaagg caggctccct gtaaatatcg
    30241 atctgggtca cacatttact ttatcgtttc agcaccaatt gcagcgatgc ctttttgcaa
    30301 gctgggcaaa ctaagtatct gaccccgcat aaggaataga acatgctcca tccgcgagcc
    30361 agaaccatgt tgttattatc gctccccgcc gtggcaattg ggattgcgtc cagtcttatt
    30421 ctgattgtgg tgatgaaaat cgcctcggta ttacagaatt tgctctggca acgactgccg
    30481 ggaactctgg ggatagccca ggattcacct ctctggatca tcggtgtatt aacgctaacg
    30541 ggtattgcgg tggggttggt tatccgtttc agccagggtc atgccggacc agaccccgcc
    30601 tgtgaaccgc tgatcggcgc accagttccg ccctctgcgc taccaggact tatcgtagca
    30661 ttaattctcg gtcttgctgg cggcgtcagc ctggggccgg aacatccgat catgaccgtc
    30721 aatatcgccc ttgccgtcgc cattggcgct cgtctgttac cgcgcgtcaa ccgaatggag
    30781 tggactattt tagcctctgc cggaaccatc ggcgcgctgt ttggcacacc tgttgcagcg
    30841 gcgttgatat tttcgcaaac cttaaatggc agtagtgaag ttccgctatg ggatcgtctc
    30901 tttgcgccgt taatggcggc agcagctggt gcactaacta ccggattatt tttccatccc
    30961 catttttcac tgcccattgc gcattacgga cagatggaaa tgaccgatat tctcagcggt
    31021 gcaattgtcg cggcgattgc catcgcagca gggatggtcg ccgtatggtg cttaccacgg
    31081 ttgcacgcga tgatgaatca aatgaaaaat ccggtgctcg tgctgggtat tggcggattt
    31141 attctcggta ttctgggggt tattggtgga ccagtttcgc tgtttaaagg gctggatgag
    31201 atgcagcaga tggtggcaaa tcaggctttc agcaccagcg attacttttt gctagcggta
    31261 attaaacttg ccgccctggt cgttgctgcc gccagtggct ttcgcggtgg gcgaatcttc
    31321 ccggcagtgt ttgtcggcgt ggcattaggg ttgatgctgc atgagcacgt acccgccgta
    31381 ccagcggcaa taaccgtttc ttgcgctatt ctcggcatcg tgctggtggt aacacgcgat
    31441 ggctggttaa gtctttttat ggcggcggtc gttgtaccca ataccacatt gctaccgctg
    31501 ctctgtatcg tcatgcttcc ggcatggctg ttattagcag gtaagccgat gatgatggtc
    31561 aatcgtccga agcaacagcc accccacgat aacgtttagc aaaaaatgct ctcctttatg
    31621 atttaagagt tatggcgatg atacggggct ttacctcccc gtaatattgc gttaacaggc
    31681 cgctgacggc ttcgatcgtg aaggagaata acaatgttca ggtcactgtt tctggcggcc
    31741 gccctgatgg catttacccc gcttgcagca aacgcaggtg aaatcaccct actgccatca
    31801 atcaaattac aaattggcga tcgcgatcat tacggtaatt actgggacgg tggtcactgg
    31861 cgcgaccgtg actactggca tcgcaattat gagtggcgca aaaaccgttg gtggcgtcat
    31921 gataatggct atcatcgtgg ctgggataag cgtaaagcgt atgagcgtgg ctatcgtgaa
    31981 ggctggcgcg atcgtgacga tcatcgcgga aaaggccgcg gacatggaca ccgccattaa
    32041 acacattcgc caatggagca caatgcctga tgcgacgcta gcgcgtctta tcaggcctac
    32101 aaaccggatc tttaacgcgt agggcggata aggcgtttac gccgcatccg ccaatagtgc
    32161 cagatgcgac gctcattcaa ctacaatccc agcgccgtcc ccaccaacaa ccagatattc
    32221 agcgccacga ccagcactac aatcacccag cctgtctgtt ttacgcgttt gctgttcacc
    32281 agatcgccca tcaacttgct gtcactggtg aaaatcagca gtggaaccag cgccagggcg
    32341 ataccaaaac ttaacagcac ctgactcata accagaatcc gtgtcggatc taatcccatc
    32401 agaatgacaa taaatgacgg cagcatggtg actgtacgac gcacccacag cgggatatgg
    32461 aagcgaatga acccctgcat caccacctgc cctgccagtg tccccactac cgttgaggac
    32521 agtccggcag caaccagact taacccaaag accgttgccg cagcatggct taacagcggt
    32581 tgcagcgtca gataagcctc atcaagatcg gcaacaccag tatgaccaga aaagtggaac
    32641 gccgccgcag ctgtagccat catcgccaga ttgacaaaac cggcaatagt catggcgata
    32701 gccacatccc atttggtagc ggaataacgt tgttgacgcg aaccgccatg taaatgctga
    32761 gtgagcgagg agtgcaaata aatcacatgc ggcataatcg tcgcccctaa cacgcctgct
    32821 gccaggaaga ccgcttccga agtaggtaaa ctcgggatca ccattccttt acccagctgc
    32881 gccaggttag gctgggagaa aatcaactcg acaatgtaag ccgcggcaac aaacaacagt
    32941 aacccgccaa tcactttctc cagcggtttt tgcccgcgac gttgcagcat taaaatcagg
    33001 aaagtcgcga tccccgtcag caccgcgccc tgcaacaacg aaacaccaag aatgagttta
    33061 aaaccgatcg ccgcaccaat aaattccgcc aggtcggttg ccatcgcaat aatttctgcc
    33121 tgaacccaat agaaccacac tacgggacgc ggatagtgat cgcgaatctg ctccgccaga
    33181 tttttaccgg tggcaatccc tagtttggca gagaggatct gaatcagcat cgccatcagg
    33241 ttggcccaaa cgacaaccca cagtagctga tagccgaagc tggcacccgc ctgaatattg
    33301 gtcgcaaagt taccgggatc gatataacca atcgccgcaa tgaacgcagg tcccattaat
    33361 gcgagcctca tcttgcgcgc cgcccgtccg ctgctactct caacgcgata gttcgtcatc
    33421 ttgtgcctct aaaacatagc ctttgctatg tttcatgcta tgataaacga gaatgattat
    33481 caaattcatt taaatggatt gtggtgattt ctgtgataga ccaggattat gactacgaaa
    33541 agattgatga cttgaatgtt atggttatgt ttaatgttag cacatttaca taactttcag
    33601 cttccataca caacatagca gaaatgtatg acagatcact atttttgaag cctgtcacag
    33661 gacgtcatta tagtgtgtgt cagatctcgt tttccttaac catgttacat agaatgtgca
    33721 cggaaattta acctgcctca tatttggagc aaatatggac cgcgtccttc attttgtact
    33781 ggcacttgcc gttgttgcga ttctcgcact gctggtaagc agcgaccgca aaaaaattcg
    33841 tatccgttat gttattcaac tgcttgttat cgaagtgtta ctggcgtggt tcttcctgaa
    33901 ctccgacgtt ggtttaggct tcgtgaaagg cttctccgaa atgttcgaaa aactgctcgg
    33961 atttgccaac gaagggacta acttcgtctt tggtagcatg aatgatcaag gcctggcatt
    34021 cttcttcctg aaagtgctgt gcccaatcgt ctttatctct gcactgatcg gtattctcca
    34081 gcacattcgc gtgttgccgg tgatcatccg cgcaattggt ttcctgctct ccaaagtcaa
    34141 cggcatgggc aaactggaat cctttaacgc cgtcagctcc ctgattctgg gtcagtctga
    34201 aaactttatt gcctataaag atatcctcgg caaaatctcc cgtaatcgta tgtacaccat
    34261 ggctgccacg gcaatgtcca ccgtgtcgat gtccatcgtt ggtgcataca tgaccatgct
    34321 ggaaccgaaa tacgtcgttg ctgcgctggt attgaacatg ttcagcacct ttatcgtgct
    34381 gtcgctgatc aacccttacc gtgttgatgc cagtgaagaa aacattcaga tgtccaacct
    34441 gcacgaaggt cagagcttct tcgaaatgct gggtgaatac attctggcag gtttcaaagt
    34501 tgccattatc gttgccgcga tgctgatcgg ctttatcgcc ctgatcgctg cgctgaacgc
    34561 actgtttgcc accgtgactg gctggtttgg ctacagcatc tccttccagg gcattctggg
    34621 ctacatcttc tatccgattg catgggtgat gggtgttcct tccagtgaag cactgcaagt
    34681 gggcagtatc atggcgacca aactggtttc caacgagttc gttgcgatga tggatctgca
    34741 gaaaattgct tccacgctct ctccgcgtgc tgaaggcatc atctctgtgt tcctggtttc
    34801 cttcgctaac ttctcttcaa tcgggattat cgcaggtgca gttaaaggcc tgaatgaaga
    34861 gcaaggtaac gtggtttctc gcttcggtct gaaactggtt tacggctcta ccctggtgag
    34921 tgtgctgtct gcgtcaatcg cagcactggt gctgtaagac catacataaa aaagccgggg
    34981 ataattccc
//
LOCUS       DADMHM010000020        34872 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.021, whole genome shotgun sequence.
ACCESSION   DADMHM010000020 DADMHM010000000
VERSION     DADMHM010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 34872)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34872)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34872
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.021"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..407
                     /gene="speG"
                     /locus_tag="JN125_000837"
     CDS             <1..407
                     /gene="speG"
                     /locus_tag="JN125_000837"
                     /EC_number="2.3.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="spermidine N1-acetyltransferase"
                     /protein_id="HAY8870704.1"
                     /translation="HDQSERRFVVECDGEKAGLVELVEINHVHRRAEFQIIISPEYQG
                     KGLATRAAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFTVEGELMHEFFING
                     QYRNAIRMCIFQHQYLAEHKTPGQTLLKPTAQ"
     gene            complement(410..1120)
                     /locus_tag="JN125_000838"
     CDS             complement(410..1120)
                     /locus_tag="JN125_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416102.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnfC family lipoprotein"
                     /protein_id="HAY8870705.1"
                     /translation="MKYKLLPCLLAIFLTGCDRTEVTLSFTPEMASFSNEFDFDPLRG
                     PVKDFTQTLMDEQGEVTKRVSGTLSEEGCFDSLELLDLENNTVVALVLDANYYRDAET
                     LEKRVRLQGKCQLAELPSAGVSWETDDNGFVIKASSKQMQMEYRYDDQGYPLGKTTKS
                     NDKTLSVSATPSTDPIKKLDYTAVTLLNNQRVGNVKQSCEYDSHANPVDCQLIIVDEG
                     VKPAVERVYTIKNTIDYY"
     gene            1228..1533
                     /locus_tag="JN125_000839"
     CDS             1228..1533
                     /locus_tag="JN125_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707474.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1161 domain-containing protein"
                     /protein_id="HAY8870706.1"
                     /translation="MKLSTCCAALLLALASPAVLAAPGSCERIQSDISQRIINNGVPE
                     SSFTLSIVPNDQVDQPDSQVVGHCANDTHKILYTRTTSANVSAPAQSTQDGAPAEPQ"
     gene            1732..4158
                     /locus_tag="JN125_000840"
     CDS             1732..4158
                     /locus_tag="JN125_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase subunit A"
                     /protein_id="HAY8870707.1"
                     /translation="MSKNDRMVGISRRTLVKSTAIGSLALAAGGFSLPFTLRSAAATV
                     QQASEKVIWGACSVNCGSRCALRLHVKDNEVTWVETDNTGSDEYGNHQVRACLRGRSI
                     RRRINHPDRLNYPMKRVGKRGEGKFERISWDEALDTIASSLKKTVEQYGNEAVYIQYS
                     SGIVGGNMTRSSPSVSAVKRLMNCYGCSLNQYGSYSTEQISCAMPYTYGSNDGNSTTD
                     IENSKLVVMFGNNPAETRMSGGGITYLLEKAREKSNAKMIVIDPRYTDTAAGREDEWL
                     PIRPGTDAALVAGIAWVLINENLVDQPFLDKYCVGYDEKTLPADAPKNGHYKAYILGE
                     GDDNTAKTPQWASQITGIPVDRIIKLAREIGTAKPAYICQGWGPQRQANGELTARAIA
                     MLPILTGNVGISGGNSGARESTYTITIERLPVLDNPVKTSISCFSWTDAIDHGPQMTA
                     IRDGVRGKDKLDVPIKFIWNYAGNTLVNQHSDINKTHEILQDESKCEMIVVIENFMTS
                     SAKYADILLPDLMTVEQEDIIPNDYAGNMGYLIFLQPVTSEKFERKPIYWILSEVAKR
                     LGPDVYQKFTEGRTQEQWLQHLYAKMLAKDPALPSYDELKKMGIYKRKDPNGHFVAYK
                     AFRDDPEANPLKTPSGKIEIYSSRLAEIARTWELEKDEVISPLPVYASTFEGWNSPER
                     RTFPLQLFGFHYKSRTHSTYGNIDLLKAACRQEVWINPIDAQKRGIANGDMVRVFNHR
                     GEVRLPAKVTPRILPGVSAMGQGAWHEANMSGDKIDHGGCVNTLTTLRPSPLAKGNPQ
                     HTNLVEIEKI"
     gene            4219..6468
                     /locus_tag="JN125_000841"
                     /pseudo
     CDS             4219..6468
                     /locus_tag="JN125_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416105.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
     gene            6464..7012
                     /gene="dmsB"
                     /locus_tag="JN125_000842"
                     /pseudo
     CDS             6464..7012
                     /gene="dmsB"
                     /locus_tag="JN125_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213046.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfoxide reductase subunit B"
     gene            7014..7868
                     /locus_tag="JN125_000843"
     CDS             7014..7868
                     /locus_tag="JN125_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase anchor subunit"
                     /protein_id="HAY8870708.1"
                     /translation="MGNGWHEWPLVIFTVLGQCVVGALIVSGIGWFAVKNDADRQRIV
                     RGMFFLWLLMGIGFIASVMHLGSPLRAFNSLNRIGASGLSNEIAAGSIFFAVGGLWWL
                     VAVIGKMPQALGKLWLLVSMALGVIFVWMMTCVYQIDTVPTWHNGYTTLAFFLTVLLS
                     DPILAAAILRAARVTFNTTPFAIISVLALIACAGVIVLQGLSLASIHSSVQQASALVP
                     DYASLQVWRVVLLCASLGCWLCPLIRRREPHVAGLILGLILILGGEMIGRVLFYGLHM
                     TVGMAIAG"
     gene            7911..8525
                     /gene="dmsD"
                     /locus_tag="JN125_000844"
     CDS             7911..8525
                     /gene="dmsD"
                     /locus_tag="JN125_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707489.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tat proofreading chaperone DmsD"
                     /protein_id="HAY8870709.1"
                     /translation="MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWET
                     QWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDS
                     TLALRQWMREKGIQFEMKQYEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWST
                     RFLDVFIEKAEHPFYRALGELSRLTLAQWQSQLLIPVAVKPLFR"
     gene            8684..9976
                     /gene="clcB"
                     /locus_tag="JN125_000845"
     CDS             8684..9976
                     /gene="clcB"
                     /locus_tag="JN125_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001315626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="voltage-gated ClC-type chloride channel ClcB"
                     /protein_id="HAY8870710.1"
                     /translation="MHHLHIYPDLRTMFRRLLIATVVGILAAFAVAGFRHAMLLLEWL
                     FLNNDSGSLVNAATNLSPWRRLLTPALGGLAAGLLLMGWQKFTQQRPHAPTDYMEALQ
                     TDGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFTPRQEWKLWI
                     ACGAAAGMAAAYRAPLAGSLFIAEVLFGTMMLASLGPVIISAVVALLVSNLINHSDAL
                     LYNVQLSVTVQARDYALIISTGVLAGLCGPLLLTLMNACHRGFVSLKLAPPWQLALGG
                     VIVGLLSLFTPAVWGNGYSTVQSFLTAPPLLMIIAGIFLCKLCAVLASSGSGAPGGVF
                     TPTLFIGLAIGMLYGRSLGLWFPDGEEITLLLGLTEMATLLAATTHAPIMSTLMICEM
                     TGEYQLLPGLLIACVIASVISRTLHRDSIYRQHTAQHS"
     gene            complement(9929..10624)
                     /gene="bioD"
                     /locus_tag="JN125_000846"
     CDS             complement(9929..10624)
                     /gene="bioD"
                     /locus_tag="JN125_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310326.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent dethiobiotin synthetase BioD"
                     /protein_id="HAY8870711.1"
                     /translation="MLKRFFITGTDTSVGKTVVSRALLQALASQGKTVAGYKPVAKGS
                     KETPEGLRNKDALVLQSVSTIELPYEAVNPIALSEEESSVAHSCPINYTLISNGLANL
                     TDKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAIA
                     NDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPLIGELPYLPRAEQRELGQYIRLA
                     MLRSVLAVDRVTV"
     gene            complement(10749..11969)
                     /gene="mlc"
                     /locus_tag="JN125_000847"
                     /gene_synonym="dgsA"
     CDS             complement(10749..11969)
                     /gene="mlc"
                     /locus_tag="JN125_000847"
                     /gene_synonym="dgsA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor Mlc"
                     /protein_id="HAY8870712.1"
                     /translation="MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAP
                     ASITKIVREMLEAHLVQELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALR
                     DLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTE
                     NGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQV
                     VIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILE
                     LAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIITGVGAHVGRILAIMVNLFN
                     PQKILIGSPLSKAADILFPVISDSIRQQALPTYSQHISVESTQFSNQGTMAGAALVKD
                     AMYNGSLLIRLLQG"
     gene            complement(12104..12997)
                     /locus_tag="JN125_000848"
     CDS             complement(12104..12997)
                     /locus_tag="JN125_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY8870713.1"
                     /translation="MNIELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQALEQQ
                     IGARLLARTNRSVLLTAAGKQFLADSRQILSMVDDAAARAERLHQGEAGELRIGFTSS
                     APFIRAVSDTLSLFRRDYPGVHLQTREMNTREQIAPLIEGTLDMGLLRNTALPETLEH
                     AVIVHEPLMAMIPHDHPLANNPNVTLAELAKEPFVFFDPHVGTGLYDDILGLMRRYHL
                     TPVITQEVGEAMTIIGLVSAGLGVSILPASFKRVQLNEMRWVPIAEEDAVSEMWLVWP
                     KHHEQSPASRNFRIHLLNALR"
     gene            13104..14356
                     /locus_tag="JN125_000849"
                     /pseudo
     CDS             13104..14356
                     /locus_tag="JN125_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416113.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            14753..15067
                     /locus_tag="JN125_000850"
     CDS             14753..15067
                     /locus_tag="JN125_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416114.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid shock protein"
                     /protein_id="HAY8870714.1"
                     /translation="MKKQIEGMTMKKVLALVVAAAMGLSSAAFAAETATTTKAAPAKT
                     THHKKQHKAAPAQKAQAAKKHHKNTKAEQKAPEQKAQAAKKHAGKHSHQQPAKPAAQP
                     AA"
     gene            15160..15243
                     /locus_tag="JN125_000851"
     CDS             15160..15243
                     /locus_tag="JN125_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870715.1"
                     /translation="MVGRYRFEFILIILILCALIAARFYLS"
     gene            15343..16164
                     /locus_tag="JN125_000852"
     CDS             15343..16164
                     /locus_tag="JN125_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HAY8870716.1"
                     /translation="MRTTIAVVLGAISLTSAFVFADKPDVAKSANDEVSTLFFGHDDR
                     VPVNDTAQSPWDAVGQLETASGNLCTATLIAPNLALTAGHCLLTPPKGKADKAVALRF
                     VSNKGLWRYEIHDIEGRVDPTLGKRLKADGDGWIVPPAAAPWDFGLIVLRNPPSGITP
                     LPLFEGDKAALTAALKSAGRKVTQAGYPEDHLDTLYSHQNCEVTGWAQTSVMSHQCDT
                     LPGDSGSPLMLHTNDGWQLIGVQSSAPAAKDRWRADNRAISVTGFRDKLDQLSQK"
     gene            complement(16203..16532)
                     /gene="mdtI"
                     /locus_tag="JN125_000853"
     CDS             complement(16203..16532)
                     /gene="mdtI"
                     /locus_tag="JN125_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug/spermidine efflux SMR transporter
                     subunit MdtI"
                     /protein_id="HAY8870717.1"
                     /translation="MAQFEWVHAAWLALAIVLEIVANVFLKFSDGFRRKIFGLLSLAA
                     VLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAG
                     MIMVKLA"
     gene            complement(16519..16884)
                     /gene="mdtJ"
                     /locus_tag="JN125_000854"
     CDS             complement(16519..16884)
                     /gene="mdtJ"
                     /locus_tag="JN125_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug/spermidine efflux SMR transporter
                     subunit MdtJ"
                     /protein_id="HAY8870718.1"
                     /translation="MYIYWILLGLAIATEITGTLSMKWASVSEGNGGFILMLVMISLS
                     YIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLI
                     KSGTRKARKPELEVNHGAV"
     gene            17296..18330
                     /gene="tqsA"
                     /locus_tag="JN125_000855"
     CDS             17296..18330
                     /gene="tqsA"
                     /locus_tag="JN125_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2 transporter TqsA"
                     /protein_id="HAY8870719.1"
                     /translation="MAKPIITLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIA
                     VILNPLVQHMVRWRVPRVLAVSILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIM
                     TPLQALEPLLQRVGIDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLF
                     MLLEVPQLPGKFQQMMARPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAAL
                     DVRFAFVWGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFG
                     NILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQTAGGQSI
                     AVLLSDLNKE"
     gene            complement(18355..19743)
                     /gene="pntB"
                     /locus_tag="JN125_000856"
     CDS             complement(18355..19743)
                     /gene="pntB"
                     /locus_tag="JN125_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000014033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit beta"
                     /protein_id="HAY8870720.1"
                     /translation="MSGGLVTAAYIVAAILFIFSLAGLSKHETSRQGNNFGIAGMAIA
                     LIATIFGPDTGNVGWILLAMVIGGAIGIRLAKKVEMTEMPELVAILHSFVGLAAVLVG
                     FNSYLHHDAGMAPILVNIHLTEVFLGIFIGAVTFTGSVVAFGKLCGKISSKPLMLPNR
                     HKMNLAALVVSFLLLIVFVRTDSVGLQVLALLIMTAIALVFGWHLVASIGGADMPVVV
                     SMLNSYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYIMCKAMNRSFISVIAGGFG
                     TDGSSTGDDQEVGEHREITAEETAELLKNSHSVIITPGYGMAVAQAQYPVAEITEKLR
                     ARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGAND
                     TVNPAAQDDPKSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTHMLFGD
                     AKASVDAILKAL"
     gene            complement(19754..21286)
                     /gene="pntA"
                     /locus_tag="JN125_000857"
     CDS             complement(19754..21286)
                     /gene="pntA"
                     /locus_tag="JN125_000857"
                     /EC_number="1.6.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Re/Si-specific NAD(P)(+) transhydrogenase
                     subunit alpha"
                     /protein_id="HAY8870721.1"
                     /translation="MRIGIPRERLTNETRVAATPKTVEQLLKLGFTVAVESGAGQLAS
                     FDDKAFVQAGAEIVEGNSVWQSEIILKVNAPLDDEIALLNPGTTLVSFIWPAQNPELM
                     QKLAERNVTVMAMDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAA
                     GKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE
                     EAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMK
                     TGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYTDLPGRLPTQSSQLYGTNLVNL
                     LKLLCKEKDGNITVDFDDVVIRRVTVIRAGEITWPAPPIQVSAQPQAAQKAAPEVKTE
                     EKCACSPWRKYALMALAIILFGWLASVAPKEFLGHFTVFALACVVGYYVVWNVSHALH
                     TPLMSVTNAISGIIVVGALLQIGQGGWVSFLSFIAVLIASINIFGGFTVTQRMLKMFR
                     KN"
     gene            21810..22754
                     /locus_tag="JN125_000858"
     CDS             21810..22754
                     /locus_tag="JN125_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HAY8870722.1"
                     /translation="MKLKNTLLASALLSATAFSVNAATELTPEQAAAVKPFDRVVVTG
                     RFNAIGEAVKAVSRRADKEGAASFYVVDTSDFGNSGNWRVVADLYKADAEKAEETSNR
                     VINGVVELPKDQAVLIEPFDTVTVQGFYRSQPEVNDAITKAAKAKGAYSFYIVRQIDA
                     NQGGNQRITAFIYKKDAKKRIVQSPDVIPADSEAGRAALAAGGEAAKKVEIPGVATTA
                     SPSSEVGRFFETQSSKGGRYTVTLPDGTKVEELNKATAAMMVPFDSIKFSGNYGNMTE
                     VSYQVAKRAAKKGAKYYHITRQWQERGNNLTVSADLYK"
     gene            22940..24322
                     /locus_tag="JN125_000859"
     CDS             22940..24322
                     /locus_tag="JN125_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HAY8870723.1"
                     /translation="MEKKLGLSALTALVLSSMLGAGVFSLPQNMAAVASPAALLIGWG
                     ITGAGILLLAFAMLILTRIRPELDGGIFTYAREGFGELIGFCSAWGYWLCAVIANVSY
                     LVIVFSALSFFTDTPELRLFGDGNTWQSIVGASALLWIVHFLILRGVQTAASINLVAT
                     LAKLLPLGLFVVLAMMMFKLDTFKLDFTGLVLGVPVWEQVKNTMLITLWVFIGVEGAV
                     VVSARARNKRDVGKATLLAVLSALGVYLLVTLLSLGVVARPELAEIRNPSMAGLMVEM
                     MGPWGEIIIAASLIVSVCGAYLSWTIMAAEVPFLAATHKAFPRIFARQNAQAAPSASL
                     WLTNICVQICLVLIWLTGSDYNTLLTIASEMILVPYFLVGAFLLKIATRPLHKAVGVG
                     ACIYGLWLLYASGPMHLLLSVVLYAPGLLVFLYARKTHTHDNVLNRQEMVLIGMLLIA
                     SVPATWMLVG"
     gene            24359..25081
                     /gene="folM"
                     /locus_tag="JN125_000860"
     CDS             24359..25081
                     /gene="folM"
                     /locus_tag="JN125_000860"
                     /EC_number="1.5.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydromonapterin reductase"
                     /protein_id="HAY8870724.1"
                     /translation="MGKAQPLPILITGGGRRIGLALAWHFINQKQPVIVSYRTHYPAI
                     DGLIKAGAQCIQADFSTNDGVMAFADEVLKSTYGLRAILHNASAWMAEKPGAPLADVL
                     ACMMQIHVNTPYLLNHALERLLRGHGHAASDIIHFTDYVVERGSDKHIAYAASKAALD
                     NMTRSFARKLAPEVKVNSIAPSLILFNEHDDAEYRQQALNKSLMKTAPGEKEVIDLVD
                     YLLTSCFVTGRSFPLDGGRHLR"
     gene            complement(25078..25413)
                     /locus_tag="JN125_000861"
     CDS             complement(25078..25413)
                     /locus_tag="JN125_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlpM family protein"
                     /protein_id="HAY8870725.1"
                     /translation="MGLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHY
                     IVASERGIEALRATIIFSMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWV
                     LIICWIKLH"
     gene            25541..26269
                     /gene="rstA"
                     /locus_tag="JN125_000862"
     CDS             25541..26269
                     /gene="rstA"
                     /locus_tag="JN125_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416125.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator RstA"
                     /protein_id="HAY8870726.1"
                     /translation="MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRE
                     NPDLVLLDIMLPGKDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKT
                     MPPAVLLARLRLHLRQNEQATLTKGLQETSLTSLTPYKALHFGTLTIDPINRVVTLAN
                     TEISLSTADFELLWELATHAGQIMDRDALLKNLRGVSYDGLDRNVDVAISRLRKKLLD
                     NAAEPYRIKTVRNKGYLFAPHAWE"
     gene            26273..27574
                     /gene="rstB"
                     /locus_tag="JN125_000863"
     CDS             26273..27574
                     /gene="rstB"
                     /locus_tag="JN125_000863"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     RstB"
                     /protein_id="HAY8870727.1"
                     /translation="MKKLFIQFYLLLFVCFLVMSLLVGLVYKFTAERAGKQSLDDLMN
                     SLLYLMRSELREIPPHDWGKTLKEMDLNLSFDLRVEPLSKYHLDDISMHRLRGGEIVA
                     LDDQYTFLQRIPRSHYVLAVGPVPYLYYLHQMRLLDIALIAFIAISLAFPVFIWMRPH
                     WQDMLKLEAAAQRFGDGHLYERIHFDEGSSFERLGIAFNQMADNINALIASKKQLIDG
                     IAHELRTPLVRLCYRLEMSDNLSAAESQALNRDISQLEALIEELLTYARLDRPQNELH
                     LSEPDLPLWLSTHLADIQAVTPDKTVRIKTLVQGHYAALDMRLMERVLDNLLNNALRY
                     CHSTVETSLLLSGNRATLIVEDDGPGIAPENREHIFEPFVRLDPSRDRSTGGCGLGLA
                     IVHSIALAMGGTVNCDTSELGGARFSFSWPLWHNIPQFTSA"
     gene            27650..28579
                     /gene="tus"
                     /locus_tag="JN125_000864"
     CDS             27650..28579
                     /gene="tus"
                     /locus_tag="JN125_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication terminus site-binding protein"
                     /protein_id="HAY8870728.1"
                     /translation="MARYDLVDRLNTTFRQMEQELAAFAAHLEQHKLLVARVFSLPEV
                     KKEDEHNPLNRIEVKQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQV
                     NNLSQAALVSHIQHINKLKTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRSLT
                     VLHDPATLRFGWANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQD
                     IAALPQNAKLKIKRPVKVQPIARVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGE
                     LLNYDADNVQHRYKPQAQPLRLIIPRLHLYVAD"
     gene            complement(28576..29979)
                     /gene="fumC"
                     /locus_tag="JN125_000865"
     CDS             complement(28576..29979)
                     /gene="fumC"
                     /locus_tag="JN125_000865"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HAY8870729.1"
                     /translation="MNTVRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTSL
                     IHALALTKRAAAKVNEDLGLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQS
                     NMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQL
                     IPQLKTLTQTLSEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYS
                     LPHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQ
                     AHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALT
                     MLCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIE
                     PNRERINQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEF
                     DSWVRPEQMVGSMKAGR"
     gene            complement(30122..31768)
                     /locus_tag="JN125_000866"
     CDS             complement(30122..31768)
                     /locus_tag="JN125_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000066594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate hydratase"
                     /protein_id="HAY8870730.1"
                     /translation="MSNKPFHYQAPFPLKKDDTEYYLLTSEHVSVSEFEGQEILKVAP
                     EALTLLARQAFHDASFMLRPAHQQQVADILRDPEASENDKYVALQFLRNSDIAAKGVL
                     PTCQDTGTAIIVGKKGQRVWTGGCDEAALARGVYNTYIEDNLRYSQNAPLDMYKEVNT
                     GTNLPAQIDLYAVDGDEYKFLCIAKGGGSANKTYLYQETKALLTPGKLKNYLVEKMRT
                     LGTAACPPYHIAFVIGGTSAETNLKTVKLASAKYYDELPTEGNEHGQAFRDVELEKEL
                     LIEAQNLGLGAQFGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADRNIKAKINRQGIW
                     IEKLEHNPGKYIPEELRKAGEGEAVRVDLNRPMKEILAQLSQYPVSTRLSLNGTIIVG
                     RDIAHAKLKERMDNGEGLPQYIKDHPIYYAGPAKTPEGYASGSLGPTTAGRMDSYVDQ
                     LQAQGGSMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIKSLECVEYPEL
                     GMEAIWKIEVEDFPAFILVDDKGNDFFQQIQLTQCTRCVK"
     gene            31967..33142
                     /gene="manA"
                     /locus_tag="JN125_000867"
     CDS             31967..33142
                     /gene="manA"
                     /locus_tag="JN125_000867"
                     /EC_number="5.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416130.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase"
                     /protein_id="HAY8870731.1"
                     /translation="MQKLINSVQNYAWGSKTALTELYGMENPSSQPMAELWMGAHPKS
                     SSRVQNAAGDIVSLRDVIESDKSTLLGEAVAKRFGELPFLFKVLCAAQPLSIQVHPNK
                     RNSEIGFAKENAAGIPMDAAERNYKDPNHKPELVFALTPFLAMNAFREFSEIVSLLQP
                     VAGAHPAIAHFLQQPNAERLSELFASLLNMQGEEKSRALAILKSALDSQQGEPWQTIR
                     LISEFYPEDSGLFSPLLLNVVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLRAG
                     LTPKYIDIPELVANVKFEAKPANQLLTQPVKQGAELDFPIPVDDFAFSLHDLSDKETT
                     ISQQSAAILFCVEGDATLWKGSQQLQLKPGESAFIAANESPVTVKGHGRLARVYNKL"
     gene            33243..34751
                     /locus_tag="JN125_000868"
     CDS             33243..34751
                     /locus_tag="JN125_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgA family protein"
                     /protein_id="HAY8870732.1"
                     /translation="MNKSLVAVGVIVALGVVWTGGAWYTGKKIETHLEDMVAQANAQL
                     KLTAPESNLEVSYQNYHRGVFSSQLQLLVKPIAGKENPWIKSGQSVIFNESVDHGPFP
                     LAQLKKLNLIPSMASIQTTLVNNEVSKPLFDMAKGETPFEINSRIGYSGDSSSDISLK
                     PLNYEQKDEKVAFSGGEFQLNADRDGKAISLSGEAQSGRIDAVNEYNQKVQLTFNNLK
                     TDGSSTLASFGERVGNQKLSLEKMTISVEGKELALLEGMEISGKSDLVNDGKTINSQL
                     DYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYNAQTQALLAQPEIANNPELY
                     QEKVTEAFFSALPLMLKGDPVITVAPLSWKNSQGESALNLSLFLKDPATTKEAPQTLA
                     QEVDRSVKSLDAKLTIPVDMATEFMTQVAKLEGYQEDQAKKLAKQQVEGASAMGQMFR
                     LTTLQDNTITTSLQYTNGQITLNGQKMSLEDFVGMFAMPALNVPAVPAIPQQ"
BASE COUNT         8592 a         8910 c         8585 g         8785 t
ORIGIN      
        1 ttcacgatca gagcgaacga cgctttgtgg tggaatgtga cggcgaaaaa gccggtctgg
       61 tggagctggt ggaaattaac catgtacatc gccgggcaga atttcagata attatctccc
      121 cggagtatca ggggaaaggt ctggcaaccc gtgccgccaa attagcaatg gactatggct
      181 tcaccgttct caatctctat aagctgtatc tgatcgtcga taaagagaat gaaaaagcga
      241 ttcacattta ccgcaagctt ggctttacgg ttgaaggtga attgatgcat gagtttttta
      301 ttaatggtca atatcgtaat gccattcgca tgtgtatatt ccagcatcag tatctggcag
      361 agcacaaaac accaggtcag actctcctga agccgaccgc acaatagcat taataataat
      421 cgatcgtatt tttgatggtg taaacccgtt cgacggcggg ttttactcct tcatcaacaa
      481 tgatcagctg acagtccacc ggattggcgt gactgtcata ttcacagctc tgttttacat
      541 taccaactcg ttgattattc agtaaagtaa ccgctgtgta atctaatttt ttgatcgggt
      601 ccgttgatgg cgtggcgctg acagataatg ttttgtcgtt acttttcgtg gttttaccca
      661 gtggataacc ctgatcatca tagcgatatt ccatctgcat ttgtttgctg ctggctttaa
      721 tcacgaagcc attatcatcg gtttcccaac tcaccccggc agaaggtaat tctgctagct
      781 ggcattttcc ctgtaaacgt actctcttct ccagcgtctc ggcatcacgg taataattgg
      841 cgtccagtac cagagcgacc acggtattat tttccagatc cagtaattcg agtgaatcaa
      901 aacagccttc ttccgacaaa gtcccagaaa cacgtttcgt cacttcacct tgctcatcca
      961 ttaatgtctg agtgaaatct tttaccggac cacgcagcgg atcaaaatcg aattcattag
     1021 agaaactggc catctcaggg gtaaatgaaa gtgttacctc tgtgcggtca catcctgtga
     1081 ggaatatcgc gagtaagcat ggtagtaatt tgtatttcac aacagtcacc agagagtaga
     1141 gatgattctc aatcatagta gcaaatacag tactttacac gttaaatgct atgcttaaag
     1201 aagttatctt cgcgtaagga gcttatgatg aaactctcaa cctgctgtgc cgcgcttctg
     1261 ctcgccctcg cctcacccgc ggtactcgcc gcgccgggat cctgtgagcg catacagagc
     1321 gatatatcac agcgcattat caataatggc gtacccgaaa gcagcttcac attaagtatt
     1381 gtacccaatg accaggttga tcagcctgat tcccaggtcg tcgggcattg tgctaatgat
     1441 acgcataaaa ttctctacac ccgtaccacc agcgctaacg tctctgctcc cgcgcagtct
     1501 acccaggatg gcgcgcctgc cgaaccgcag taatacatta tcgactgaac gccggatatg
     1561 acacatccgg cgatttgaac atacaacata atcccacctt attactcata cccttctatt
     1621 gatgtggatt aataattctt aacccaaaat gggtagaccc cctctattgt tagcgcgcta
     1681 aatattcaat acataaacat ttatataacg ataaagaaca gggagtgagt tatgtccaaa
     1741 aatgaccgaa tggtgggcat cagccgcaga acactcgtta aatcaaccgc gataggttct
     1801 ctggcgctgg ctgcaggcgg tttttcttta ccgttcaccc tgcgcagtgc agcggcaacg
     1861 gtacaacagg ccagcgaaaa agtgatctgg ggtgcctgtt ccgtcaactg tggtagccgc
     1921 tgtgcacttc gtctacatgt taaagataat gaagtgacct gggtggaaac tgacaatacc
     1981 ggcagcgatg agtacggcaa ccatcaggta cgcgcctgtt tgcgcggtcg ctccatccgc
     2041 cggcgtatta atcatcccga tcgcttgaat tacccaatga aacgcgtggg taaacgcggt
     2101 gaaggcaaat tcgaacggat tagctgggat gaagccctgg atactatcgc cagtagcctg
     2161 aaaaaaaccg tcgaacaata tggcaatgag gctgtatata ttcagtactc ttcggggatt
     2221 gttggcggca atatgacccg ctcttcgcca tcagtctcgg cggtcaaacg cctgatgaac
     2281 tgctacggct gttcactcaa tcagtatggc tcctacagca ccgagcaaat ttcctgtgcc
     2341 atgccctaca cctacggcag taatgatggc aacagcacca cggatattga aaacagcaag
     2401 ctggtcgtga tgtttggtaa caacccggca gaaacccgca tgagcggcgg tggcatcact
     2461 tatcttcttg aaaaagcgcg cgagaaatcg aacgccaaaa tgattgttat cgatccgcga
     2521 tataccgata cggctgctgg tcgtgaagat gaatggcttc ctattcgccc gggcaccgat
     2581 gccgcgctgg ttgcgggtat tgcctgggta ttgattaacg aaaatctcgt tgatcaacct
     2641 tttctcgata aatactgcgt cggctatgac gaaaaaacct tacccgcaga tgcaccaaaa
     2701 aatggtcact ataaagccta tattcttggt gaaggtgatg ataatacagc gaaaacgccg
     2761 cagtgggctt cgcaaattac cggtatcccg gtggaccgta tcatcaaact ggcgcgtgaa
     2821 attggcacag caaaacccgc ttatatctgc cagggctggg ggccgcaacg ccaggcaaac
     2881 ggcgaactga ctgcacgcgc tattgctatg ttgcctattt tgacgggcaa tgtcggcatc
     2941 agcggcggaa atagtggcgc gcgtgaatcg acctatacca ttaccataga acgcctgccg
     3001 gtgctggata atccggtcaa aacgtcaatc tcctgcttca gctggacaga tgctatcgat
     3061 catggtccgc aaatgacggc aatccgcgac ggcgtccgcg gcaaagataa actggatgtg
     3121 cccattaagt tcatctggaa ctacgcggga aataccctcg ttaatcagca ttctgacatc
     3181 aacaaaacgc atgaaattct gcaggacgaa tcgaaatgcg aaatgattgt ggtcatcgaa
     3241 aactttatga cctcatcggc aaaatatgcc gacattctgc tgccagacct gatgaccgtt
     3301 gagcaggaag atattattcc taacgactac gccggtaaca tgggatatct cattttcctc
     3361 cagcctgtca ccagcgaaaa attcgaacgc aaaccgattt actggatcct gagtgaagtc
     3421 gcgaaacgtc ttggacctga cgtctatcaa aagttcacag aaggtcgcac gcaggaacaa
     3481 tggttacaac atctgtacgc caaaatgctt gccaaagatc cggcgttacc gtcttacgac
     3541 gaactgaaaa aaatgggtat ctataagcgt aaagatccca atggccattt tgtcgcctac
     3601 aaagcatttc gtgacgaccc cgaggcaaat ccacttaaaa cgccttccgg taagattgaa
     3661 atttattcca gcaggctggc ggaaattgcc cgtacctggg aactggaaaa agatgaagtg
     3721 ataagcccat tgccagttta tgcctcaacc tttgaaggct ggaactcccc tgaacgtaga
     3781 accttcccac tgcaactgtt tggtttccat tacaaatccc gtactcactc gacctacggc
     3841 aatattgatc tcctgaaggc tgcctgccgt caggaggtgt ggatcaaccc tatagatgcg
     3901 cagaaacgtg ggattgccaa cggcgatatg gtgcgggtgt ttaaccatcg tggcgaagtt
     3961 cggctaccag ccaaagtaac accacgtatt ctccctggag ttagcgctat gggccaggga
     4021 gcctggcacg aggccaatat gtctggcgat aaaatcgacc atggcggctg tgtgaatacg
     4081 ctaaccactc tgcgcccttc accactggcg aagggaaacc cgcagcacac taatctggtc
     4141 gagatcgaaa aaatataacc cacgacaacc ataaattctg gcatgacatt ttgtttgaaa
     4201 agcaataagt gagtaatgat gaaaatccat accacagagg cgctcatgaa ggctgaaatc
     4261 agccgtagaa gtctggcact tggcagtctt gcgctggcaa gcagtgcttt cattctgcca
     4321 ttttcccaaa tggtccgggc ggcagaggct ccggtagaag agaaagcggt ctggagttcc
     4381 tgcaccgtta actgcgggag ccgctgtctg ttacgtttgc atgtgaaaga tgacaccgtg
     4441 tactgggtgg agtctgatac gacaggtgac gacgtctacg gtaatcatca ggttcgagcg
     4501 tgtttacgcg ggcgctctat ccgccgacgg atgaatcatc ctgataggtt gaaatatccc
     4561 atgaagcgcg tcggcaagtg cggtgaaggt aaatttgaac ggataagttg ggacgaagcc
     4621 ctggatacca tcagtgataa tcttcggcgg atcctgaaag attacggcaa tgaggctgta
     4681 catgtcctgt acggaacagg cgtagatggc ggaaacatca ccaactcaaa cgtcccgtac
     4741 cgtctgatga actcttgcgg tggttttctc agtcgctatg gcagctacag tactgcacag
     4801 atcagtgccg caatgagtta tatgttcggt gccaatgatg gcaacagccc ggatgatatc
     4861 gccaatacga aactggtcgt tatgttcgga aataacccgg cagaaacgcg gatgagcggc
     4921 ggtggtgtca cttactacgt cgagcaagcc cgcgaacgtt caaacgcacg catgatcgtc
     4981 atcgatccac gttataacga cactgctgcc gggcgtgaag atgaatggct gcccattcgc
     5041 cctggcaccg atggcgcact ggcctgtgcg attgcctggg tactgattac tgaaaacatg
     5101 gtcgatcagc catttctcga caaatattgt gttggttacg atgaaaaaac gctgcccgcc
     5161 aacgcaccac gtaacgcgca ttataaagcc tatattctgg gcgaagggcc tgacggcata
     5221 gctaaaacgc cggaatgggc agcaaaaatc accagcatcc cggcagaaaa aattatccag
     5281 ttggcgcgag agatcggttc agcaaaacct gcttatattt gtcagggttg ggggccacaa
     5341 cgacattcca acggcgagca aacgtcccgc gctattgcca tgctttccgt tctcaccggt
     5401 aacgttggca taaacggcgg caactcaggt gtacgcgaag gtagctggga tctgggggta
     5461 gaatggttcc cgatgcttga gaatcctgtt aaaacgcaga tttccgtctt tacatggaca
     5521 gatgccatcg accatggtac ggaaatgacc gcgacccgtg atggtgttcg tggaaaagaa
     5581 aaactggatg tccccatcaa gtttttatgg tgctacgcca gtaacacatt gatcaatcaa
     5641 catggcgaca tcaatcacac ccatgaggtg cttcaggatg acagcaagtg cgagatgatt
     5701 gttggcattg accacttcat gacggcctcg gctaagtatt acgatatcct gttgcccgac
     5761 ctgatgccaa cagagcaaga agaccttatc tctcatgaat ctgcagggaa tatgggctat
     5821 gtgatcctcg cccaacccgc aacctcagca aaatttgaac gcaaacccat ctactggatg
     5881 ctgagtgaag tcgccaaacg cttaggacca gacgtttatc aaacctttac tgaaggtcgc
     5941 agtcagcatg aatggatcaa atatctccat gcgaaaacga aggaacgtaa ccctgagatg
     6001 cccgactacg aggagatgaa aacgaccggg atctttaaga aaaaatgccc ggaagaacac
     6061 tacgtcgctt tccgcgcatt ccgtgaagat ccacaggcaa acccgttgaa aacaccttcg
     6121 gggaaaatcg aaatttattc tgaacgactg gcgaagattg cagatacctg ggaattgaaa
     6181 aaagatgaaa ttattcatcc ccttcctgcg tataccccag gttttgatgg ctgggacgat
     6241 cccctgcgga aaacctatcc actgcagtta acgggcttcc actacaaagc gcgtacccac
     6301 tccagctacg gcaatattga tgtgttacag caggcctgcc cacaagaggt gtggatcaac
     6361 cccattgatg ctcaggcacg cggtatccgt catggcgata ccgtgcgggt atttaacaat
     6421 aatggagaaa tgctgattgc cgcaaaagtg actccgcgta ttctgccaag attttaaaga
     6481 tcttggcccg gaagtcagtt tccgccgtat ttatgaatat gctggcggcg actggcagga
     6541 agataatggc atctggcacc agaacgtgtt cgcttattat ctctccatct cctgtaacca
     6601 ttgcgatgac cccgcatgta caaaagtctg ccccagcggc gcaatgcata agcgtgaaga
     6661 tggctttgtg gtggttgatg aagatgtttg tatcggctgc cgctactgcc acatggcttg
     6721 tccgtacggc gcaccacagt acaatgctga aaaagggcac atgacgaatt gcgatggttg
     6781 ttattcgcgc gtcgccgagg ggaaacaacc catatgcatc gaatcctgcc cgctgcgtgc
     6841 acttgagttc ggtccaattg aagagctgcg ccagaagcac ggcactctgg ctgccgtcgc
     6901 gccactgccg cgcgcgcatt tcacaaaacc caatatcgtt atcaaaccta acgccaacag
     6961 ccgcccgacc ggcgatacca ctggttatct ggctaatccg gaggaagtgt aaaatgggaa
     7021 atggatggca tgaatggcca ctggttatct ttaccgtatt gggtcaatgc gtagtaggcg
     7081 cgctgattgt tagcggaatt ggctggttcg ccgtcaaaaa tgacgcagac cgtcagcgta
     7141 ttgtccgtgg catgtttttc ctctggctgt tgatgggcat cgggtttatt gcctctgtca
     7201 tgcacctggg atcgccactg cgagcgttta actcgctgaa tcgaatcgga gcttctggtc
     7261 tgagtaacga gattgctgcc ggttccatat tttttgccgt tggtggacta tggtggctgg
     7321 tggcggtcat cggtaaaatg ccgcaagcgt tggggaaact ctggttactt gtcagcatgg
     7381 cgctcggcgt cattttcgtc tggatgatga cctgcgtgta tcaaatcgac accgtgccaa
     7441 cctggcataa cggttacact acgctggctt tcttcctgac ggtattgttg agcgatccaa
     7501 tacttgctgc cgcaattctg cgggcagctc gcgttacatt taataccaca ccatttgcca
     7561 tcattagcgt tctggcgctg atcgcttgtg ccggggtgat tgtgctgcaa ggtttgtctc
     7621 tggcgtctat tcactcatcc gtgcaacaag ccagcgcact ggtaccagat tacgcctcct
     7681 tacaggtctg gcgtgtggta ttgttatgcg caagtcttgg atgctggctt tgcccgctca
     7741 ttcgtcgccg tgaacctcac gttgccggac ttattctggg gctaatcctc atacttggcg
     7801 gtgagatgat cgggcgtgtg ctcttttatg gcctgcacat gacagtagga atggctattg
     7861 caggttaaca aattggtgcg gggcaacccg cacatttcag gatgttagga atgacccatt
     7921 tttcacagca agataatttt tctgtcgcgg cgcgcgtgtt gggcgcgctg ttttattacg
     7981 ctccagagag tgcggaagcc gcacctctgg ttgcggtact caccagtgac ggctgggaaa
     8041 ctcagtggcc tctaccagaa gcgtcattag cgccgctggt gacggctttt cagacacagt
     8101 gtgaagagac tcacgcccag gcctggcagc gtttgtttgt cggcccgtgg gcactgccgt
     8161 ctccgccgtg ggggtcggtc tggctggatc gcgaatctgt gctgtttggc gattcaacat
     8221 tggcacttcg tcagtggatg cgcgagaaag gcattcagtt tgaaatgaag caatacgaac
     8281 cggaagatca ttttggttca ctgctgttga tggctgcgtg gttggcggag aatggtcgcc
     8341 agacagaatg cgaagaattg ctggcatggc acctttttcc gtggtcaaca cgttttcttg
     8401 atgtttttat cgaaaaagca gaacaccctt tctaccgtgc actgggtgaa ctgtctcgct
     8461 taacgctggc gcaatggcaa tcacaactgt taattcctgt cgcggttaaa ccgctgtttc
     8521 gataggatca ccgtaatatt gccggatggt gacgattacg cgcaatccgg caataatagg
     8581 ttacagtgtc acgttttttt atctcttaaa gcacgcactg cttttgcggc tggcctcttt
     8641 tgccgcaaaa tagtcgcccg tgtttcattg cccatttctg ctcatgcatc atctacacat
     8701 ctatccggat ctgcgcacta tgttccgccg tctgcttatc gcaacagtcg tcggtattct
     8761 cgcggccttt gccgttgccg ggtttcgtca tgcgatgctg ctactggagt ggttgttcct
     8821 caataatgac tccggcagtc tggtcaatgc agcgacaaac ctttccccct ggcgacggtt
     8881 gctaactccg gcgctcggcg gactggcggc gggtttgttg ctgatgggct ggcagaaatt
     8941 tacccaacaa cgccctcatg cgccgaccga ttacatggaa gcgttgcaaa ccgatggaca
     9001 gttcgattac gcagcaagcc tggttaaatc gcttgcctcg ctgctggtag taaccagcgg
     9061 cagtgcaatt ggtcgcgaag gtgcgatgat tcttttagct gcccttgccg cctcctgttt
     9121 tgcccaacgt tttacgccac gccaggagtg gaaattatgg atcgcctgtg gggccgcggc
     9181 gggaatggct gcggcctatc gtgccccgct tgctggcagt ttatttatag ccgaagtgct
     9241 gtttggcact atgatgttgg cctctctcgg cccggtgatt atttccgccg tcgtggcatt
     9301 gctggttagc aatctgatta atcatagcga cgcgttactc tacaacgtac aactctcagt
     9361 gacggttcag gctcgtgact atgcgctgat tatcagtaca ggtgtgctgg caggtctgtg
     9421 cggaccactg ttgttaacgt taatgaacgc ctgtcatcgt ggatttgtga gtctcaaact
     9481 tgcgccgccc tggcaactgg cactaggcgg ggtgatcgtg ggtctgcttt ccctgttcac
     9541 acctgcagtg tggggcaacg gctatagcac cgtacaatcc tttttaaccg ccccaccact
     9601 gttaatgatc attgccggga tcttcctttg taaactgtgt gccgtgctgg cgagtagcgg
     9661 ttccggcgca cccggtggtg tctttacacc gacgctattt atcggtcttg ccattggcat
     9721 gttgtatggt cgtagcctgg gattatggtt ccctgatggc gaagaaatta cgcttttact
     9781 cggattgacc gagatggcga cactgttggc ggcaaccacg cacgcgccga ttatgtcgac
     9841 gttgatgata tgtgaaatga ccggggagta tcagctactc cccggtttat tgattgcctg
     9901 cgtcattgcg tcggtaattt cgcggacgtt acaccgtgac tctatctacc gccagcacac
     9961 tgcgcagcat agctaagcgg atgtattgcc ccagttctcg ctgttcggcg cgcggcagat
    10021 aaggcagttc accaatgagc ggtgccggaa gttttttacc cagcacatca atgatttccg
    10081 cataatgcgc cagtcctggg ttgattcggt tagccaccca gccaatgagc ggcagcccgt
    10141 cgttggcaat cgcctgagct gttagcagtg catggttaat gcaaccttcc tgaataccga
    10201 caaccatcaa caccggcaac tgttcctgca ccacccattc agagagtgga cgcaaatcat
    10261 tcatcagact gcgccagccg ccagtccctt ctaccacgac atgatcgact ttatcggtca
    10321 ggtttgccag gccgtttgaa atgagggtgt aattgattgg gcaactgtgc gccacgctac
    10381 tttcttcttc gcttaacgcg ataggattaa ctgcttcata aggcagttcg atggttgaaa
    10441 cactctgcaa caccagggca tctttattac gcagcccttc gggtgtctct ttgctcccct
    10501 tcgctacggg tttatatccc gcaactgttt ttccctggga ggctaacgct tgtagcaatg
    10561 cgcgggaaac caccgttttc cctacagaag tgtctgtacc ggtaataaag aaacgcttca
    10621 gcatcactaa ctccaccgtt atgcttcaca aatataaacc aggaaaataa ttaaccttga
    10681 aagtctaagt tatgctttcc tggcccaaat tgagatagcg caaattttgg tagaacagtt
    10741 aaaaaatgtt aaccctgcaa cagacgaatc aacaaagaac cgttatacat cgcgtctttt
    10801 accagcgcag cgcctgccat cgtgccctgg ttagaaaact gagtactctc aacgctaatg
    10861 tgctgactat acgtaggaag ggcctgctga cgtatgctgt ccgagatgac agggaagagg
    10921 atatctgccg ctttacttaa cggtgagcca atcagtattt tttgtgggtt aaataaattc
    10981 accatgatgg caagaatgcg cccgacatgc gcgcccaccc cggtaatgat gtcttttgcc
    11041 agtagatcgc cgcgcaatgc cgcctgacac aatgagtcca cggttaacgg ttgcccatgt
    11101 aacatcgagc tcatggattg attgagacgc agctgtgcca gctcaagaat actgtccaca
    11161 ctggcgatgg tttcgaggca gccgtggttc ccgcaataac agcgtttacc atatgggtcg
    11221 acctgtgtgt ggcctatttc cacgagacta ctgctgcctg cgtgtagcag atgaccatcg
    11281 gtaatgacgc ccgcccccac gttgtgatcg ataaccacct gaatcacatc gcgcgccccg
    11341 cgtgaggcac caaacaaggc ctctgccatc gtccatgcgc tgatatcatg ctgaatataa
    11401 accggtacgc cggtatgctg ctccagcgcc tcgccgagcg gcatctcttt tacatcctcg
    11461 tagaacggca tgcgatgtac aataccattt tccgtatcaa taattcccgg cagggttatg
    11521 gcaatcgaag ttagacgctc aagttttttc tggtggcgga taaaaaactg atcgatatgg
    11581 gaaatgatac gatccagcaa tggcaagtca tcttttaacg ccagttcctg cgactcttcc
    11641 accaccagtt tgctgctcag atcgcgcaga gcaaggaaaa tctccccgcg actaatgcgc
    11701 agagaaagat agtgccaggc ttcagtttca accaccagcc ccaccgccgg acggccacgg
    11761 ttccccgctt ctttgatttc cagctcttgc accaagtgtg cttcgagcat ctcacggaca
    11821 attttagtga tactggcagg agccagctgc gccagacggg aaagatcgat acgcgagact
    11881 ggaccaagct gatcaatcag gcgataaacc gcgcccgcgt tggtctgctt tatttgatca
    11941 atgtgcccag gctggttttc agcaaccacc gcatactccc tatattttcg cgctccgaaa
    12001 taatctgtag gctatggtga agcacttcaa tacgtgtcgt caaattttta cttagacatg
    12061 tgattaatag cacatttttc gggctttttc gctgaaattt ccctcacctg agagcattca
    12121 gcagatgaat acgaaagtta cgcgaagctg gactttgttc atgatgtttc ggccagacca
    12181 accacatttc agaaaccgca tcctcttcag caatcggcac ccagcgcatt tcgttgagct
    12241 gaacacgttt aaatgaagca ggcaaaattg aaacacccag accggcggaa accagaccga
    12301 tgatggtcat tgcctcgccc acctcctgag tgatgacggg cgtcaaatgg taacgtcgca
    12361 tcagcccgag aatatcgtca tacagccctg tcccgacgtg cggatcaaaa aagacgaagg
    12421 gttctttcgc cagttcagcc aacgttacat tcgggttatt tgccagggga tgatcgtgcg
    12481 ggatcatcgc cataagcggt tcatggacga tgactgcgtg ttcaagcgtc tccggtaacg
    12541 ctgtgttacg cagcaatccc atatccagcg ttccttcaat gagcggagcg atttgctcac
    12601 gagtgttcat ttcgcgggtt tgtaaatgga caccgggata atcacggcga aacagcgata
    12661 acgtatcgga caccgcccga ataaaaggag cggacgaagt aaaaccaatg cgcaactccc
    12721 ccgcttcacc ctgatgcagt ctttcagcgc gagcggcagc gtcatctacc atagacagga
    12781 tttgccgact atctgcaaga aactgttttc ctgctgccgt cagcaataca ctgcgattag
    12841 ttcgtgccag cagtcgggca ccaatttgtt gctccagtgc ctgaatctgc tgacttagcg
    12901 gtggttgcga aatattcagg cgggcagcgg cgcgcccgaa atgcagctct tccgcaacag
    12961 caacaaagta acgcagatga cgaagttcaa tattcatatt taaaacatct tatttgagat
    13021 tattaatata ttagacagag caattcgatt ttcctaacct atgtataagc ctgatccaca
    13081 ggcatattta gcaaggattt caagtgagcc gtactacaac tgttgatggc gctccggcaa
    13141 gcgacactga caagcaaagc atttctcagc caaatcaatt tattaaacgc ggtacgccgc
    13201 aatttatgcg cgtcaccctg gcgctgttct ctgccggact ggcaaccttt gcactcctct
    13261 attgtgtgca gcctatcctt ccggtgcttt cgcaggagtt tggcttaacc cccgcgaaca
    13321 gtagtatttc actgtccatt tccacggcga tgttggctat tggtttgctg tttactggcc
    13381 ccctatccga tgccattggt cgcaaaccag tgatggtcac ggcgctactg ttggcctcca
    13441 tttgtacgtt atttcgacaa tgatgaccag ctggcacggc attttgatta tgcgcgcctt
    13501 gattgggctt tcgttaagtg gcgtggcagc tgttggcatg acttatctta gcgaggaaat
    13561 ccaccccagt ttcgtggcct tttcgatggg gttgtatatc agcggcaact caattggcgg
    13621 catgagcgga cgcttaatta gtggtgtctt cacggacttt ttcaactggc gaattgctct
    13681 ggcggcaatc ggttgtttcg cgctagcctc ggcgttgatg ttctggaaaa tccttccgga
    13741 atcacgccat tttcgcccga cttcgctgcg acctaagacg ttgtttatca actttcgtct
    13801 gcactggcgt gaccggggat taccgttatt gttcgcagaa ggctttttgc tgatggggtc
    13861 gttcgtcacg ctgtttaatt acatcggcta tcggttgatg ctttccccct ggcatgtcag
    13921 tcaggccgtg gttggcttat tatcgctggc ttatttgacc ggtacacgga gctcacccaa
    13981 agccggaacc atgaccaccc gctacgggcg cggtccggtg atgttgtttt cgacgggggt
    14041 tatgctgttt ggtttactga tgaccttatt cagctcgctg tggctgatct ttgccggaat
    14101 gttactcttc tcagcaggat tcttcgcagc ccactcagtt gccagcagct ggatcggccc
    14161 ccgcgcaaaa cgcgctaaag gccaggcctc ctcgctgtat ctgttcagtt actatctggg
    14221 gtcgagtatt gccgggacgc tgggtggtgt tttctggcat aactatggct ggaacggcgt
    14281 cggcgcattt attgctctga tgctggtcat tgctctgctg gtcaggacgc gtttgcatcg
    14341 tcgtctgcac gcctgaaaaa taagcccgga ctgcggtaac tacacgtccg gacttattgc
    14401 ttgctcaaac caacgttaat agccatccta aaatagacga agcgccagcc aattcccgca
    14461 gtgcgtctag cgtcatcagg attataagta cccaaataaa cggattcatt ttgctgtgtg
    14521 tcatttatta ctgatgcgca gttattctac cgctttgtaa gtagtaaaat agttaacccg
    14581 atcaagacta ctattattgg tagctaaatt tcccttaagt cacaatacgt tattatcaat
    14641 gctgtaattt attcagcgtt tgtacatatc gttacacgct gaaaccaacc actcacggaa
    14701 gtctgccatt cccagggata tagttatttc aacggccccg cagtggggtt aaatgaaaaa
    14761 acaaattgag ggtatgacaa tgaaaaaagt attagctctg gttgttgccg ctgctatggg
    14821 tctgtcttct gccgcctttg ctgcagagac tgcgacgacc accaaagcag cgccggcgaa
    14881 aacgacacat cataaaaaac agcataaagc agcacctgcc cagaaagcgc aggcagctaa
    14941 aaagcatcat aaaaatacga aagctgaaca gaaagcccct gaacaaaaag cgcaggcagc
    15001 gaagaaacac gccgggaaac acagtcatca gcaaccggca aaacctgctg cacaacccgc
    15061 agcgtaagtt ttcaacagta atgctggcgc gccccctcgc gcctgaaaat tacggtgcta
    15121 agcgggtaac gtttagcacc gcctttagcg gagggtagta tggtgggccg ttatcgcttt
    15181 gagttcattc ttatcatcct tattttatgc gcactgattg ccgcccgttt ttatctttcc
    15241 tgactgtagt tatctgattt tactcccact ttcatcccgt cccgtctata gtatttatga
    15301 gggtttgctt ttaataatca taattaccca ccagagtgtg atatgcgtac aaccattgct
    15361 gtagtgttgg gtgcaattag tttgacgtct gcttttgtgt ttgcagataa accagacgtt
    15421 gccaaatcgg caaacgatga ggtcagcacc ctgttttttg gtcatgatga tcgtgtgcca
    15481 gtgaatgaca cggcccaatc accgtgggat gcggttgggc aactggaaac ggccagcggc
    15541 aatttatgta cggcgacgct gattgcaccc aatctggcat taacggcagg acactgttta
    15601 ttgacacctc caaagggtaa agccgataaa gcagtggcgc tgcgttttgt gtcaaataaa
    15661 ggtctttggc gctatgagat ccacgacata gaaggccgcg ttgatccgac actgggaaag
    15721 cggttaaaag cagatgggga tggttggatt gtacctcccg cagccgcgcc gtgggacttc
    15781 ggattgattg tgctacgtaa tcccccttct ggcattacac cgttgccgtt atttgaggga
    15841 gataaagccg cgcttactgc cgcattaaaa tcggctggcc gtaaagtaac tcaggcggga
    15901 taccctgaag atcatctcga tacgttgtac agtcatcaaa actgtgaagt gactggctgg
    15961 gcgcaaacgt cggtgatgtc acatcagtgc gataccttgc cgggtgacag cggttcgcct
    16021 ctgatgttgc ataccaatga cggctggcaa ttaattgggg tgcaaagttc ggctcctgcc
    16081 gcgaaagatc gctggcgcgc cgataaccgg gccatttctg ttaccggttt tcgcgacaag
    16141 ctggatcaac tgtcgcaaaa ataatgttca aacgctgccc gactgtgcgg gcagcgtgtt
    16201 catcaggcaa gtttcaccat gatcattcca gccaacagca agaccaggcc aatccagcct
    16261 ttacgattta accgttgacc aaacaagatc caacctgcgg ctaacgtggc ggcaatacca
    16321 aacccgcccc acaatgcata agcgacagac aagtcgatcc ctttaacggc ctgagaaagc
    16381 gcactaaagg cagccagcac cgccgccagg gagagcaagc caaatatttt gcgacgaaag
    16441 ccgtcagaaa atttcaaaaa gacgttagca acgatttcca gcacgattgc caatgccagc
    16501 caggcggcgt gaacccattc aaactgcgcc atggttcacc tccagttcag gtttacgcgc
    16561 tttacgggta cctgatttta tcaacacaat cccggcgacc agggtggtta acccggcaat
    16621 tttcatcagc gataaacttt cgtcgaataa caaaacgcta aacaaggtaa taaataaaat
    16681 accgatacct tcccacagcg cataagctac gcctaaggcg atctttttaa cggcgaaaga
    16741 gagaaatata tacgacagag aaatcatcac cagcattaaa ataaagccgc catttccctc
    16801 actgacgctc gcccatttca ttgacagcgt accggtaatt tctgtagcaa tagccaggcc
    16861 taataaaatc caataaatat acattgtcct tctcctgcaa gagaattatt ttaattttcg
    16921 cttaattcag cgaaatcaaa gtaaagtggt caagccccgc gcatagggca agcttaggca
    16981 gaagaaagga ctaaagcgcg ttgcgccagt gctgctcacc tacgagcaag atagtggatg
    17041 aggtacgaag atgggtaaat gttgaaaata aggtcctgaa caaattgtcc ataatattac
    17101 aattatccgc agtgttgctt ctcgtcatcg cggatgataa ttgtcctcgg tagttgaaca
    17161 cgcctgattt gtatcatagc ttaagaatta actcaaaata ttttcacttc tttacctgag
    17221 cggtttgatt ttcgttatga tgacggagcg aaaaagacat tattattagc aaaggaagaa
    17281 aaaacgggga caagcatggc aaagccgatc atcacgctca atggcctaaa aatcgtcatt
    17341 atgttgggaa tgctggtcat tattctctgc ggtatccgtt ttgccgccga gatcatcgtg
    17401 ccgtttattc tcgcattatt tattgctgtt attcttaacc cgctggtgca acacatggtc
    17461 cgctggcgag tgccgcgtgt actggcggtg tcgattttga tgaccatcat cgtgatggcg
    17521 atggtgttgc tattagctta tctgggttcc gcgctcaacg agttgacgcg gacgttaccg
    17581 caatatcgca actctattat gacgccgctg caagctcttg agccgttgtt gcaacgcgta
    17641 gggattgacg tctcagttga ccagctggcg cattacattg atccgaacgc agcgatgacg
    17701 ttgctcacca acttattgac gcagttatct aatgccatgt catcaatatt tttattgctg
    17761 ctgacggtgc tgtttatgct gctcgaagtg ccacaattgc ccggaaaatt tcagcaaatg
    17821 atggcgcgtc cggttgaagg gatggcggcg attcaacgtg caattgacag tgtttctcat
    17881 tatctggtgc tgaaaacagc catcagcatc atcaccggcc tggtcgcctg ggcgatgctc
    17941 gccgcactcg atgttcgctt cgcttttgtc tggggattgc tggcctttgc gcttaattac
    18001 atccctaata ttggttcagt tctcgcggca atccccccta tcgctcaggt actggtgttt
    18061 aatggcttct acgaagcgtt gctggtgctg gcgggatatc tgctgattaa tctggtcttc
    18121 ggcaatattc tggagccgcg catcatggga cgtgggctgg ggctttccac attggtggta
    18181 tttttgtcgt tgattttttg gggatggttg ttaggaccgg tgggtatgct gctttccgtg
    18241 ccgttaacaa ttattgtcaa aattgcgctt gaacaaacag cgggaggtca aagcatcgcc
    18301 gttctgttaa gcgatctcaa taaagagtga cggcctccgc agaggccgtc agggttacag
    18361 agctttcagg attgcatcca cgctggcttt ggcgtcacca aacagcatgt gggtgttttc
    18421 cttgaagaac agcgggtttt gcacaccagc atagccagtg ttcatcgaac gtttaaagac
    18481 aatcacgttc tgcgctttcc acacttccag cacaggcata ccagcaatag gacttttcgg
    18541 atcatcctgc gccgccgggt taaccgtatc gttagcacca atcaccagta cggtatcggt
    18601 atcagcaaag tcatcgttga tctcgtccat ttccagcacg atgtcatacg gtacttttgc
    18661 ttcagccagc aatacgttca tatgtccagg caaacgcccc gcaaccgggt ggataccgaa
    18721 acgcacgttg ataccacgag cgcgcagttt ctcggtaatt tcagcgacag gatattgcgc
    18781 ctgcgcgact gccatgccgt accccggagt aatgatcact gaatgggagt ttttcagcag
    18841 ttccgctgtc tcttctgcgg tgatttcgcg gtgctcgccc acttcctgat catcgccagt
    18901 agaagagccg tcggtgccga aaccacccgc aataacgctg ataaaggaac ggttcatcgc
    18961 cttacacata atgtaagaaa ggatagcccc cgaagaaccg accagcgcac cggtcacaat
    19021 cagcaggtcg ttgctgagca taaagcccgc agccgcagcc gcccagccgg agtacgagtt
    19081 cagcatcgac accaccactg gcatatctgc accaccgatg gaggcgacta aatgccagcc
    19141 gaataccagc gcaatggcgg tcattattag caatgccagc acttgcaggc cgacgctgtc
    19201 cgtgcgaaca aatacaatca gcagcaggaa ggaaacgacc agagccgcca ggttcatttt
    19261 gtgacggttt ggcagcatca acggtttaga cgaaatcttg ccacacagtt tgccgaacgc
    19321 caccaccgaa cccgtgaacg ttaccgcccc gatgaagata ccgaggaaca cttccgtcag
    19381 gtgaatattg accagaatcg gtgccattcc cgcgtcatga tgcagatagc tgttaaagcc
    19441 aaccagcact gccgccagac ccacgaagct gtgcaggatc gccaccagtt ctggcatttc
    19501 ggtcatttca actttcttcg ccagacggat accaattgcc cctccaatga ccatcgccag
    19561 caagatccag ccaacattac ccgtatccgg tccaaaaatg gttgcgatta acgcaatcgc
    19621 catccctgcg ataccgaagt tgttaccctg gcgagacgtt tcatgtttcg aaagaccggc
    19681 cagactgaag ataaacagga tcgcggcaac aatgtatgca gctgtaacta atcctccaga
    19741 catatgttac cccttaattt ttgcggaaca ttttcagcat gcgctgagtc acggtgaagc
    19801 caccgaaaat attaatgctg gctataagca ccgcgataaa actaaggaag ctaacccagc
    19861 cgccctggcc aatctgcaac agtgctccga caacaataat ccctgaaatc gcgttggtga
    19921 ccgacatcaa cggtgtatgc agcgcgtgcg atacattcca caccacgtaa taaccgacaa
    19981 cgcaggccag cgcgaaaacg gtaaagtgcc caagaaactc tttcggcgca acgcttgcca
    20041 gccaaccgaa aaggatgatt gccagcgcca tcaacgcgta tttacgccac ggtgagcagg
    20101 cacatttttc ctcagttttc acttccggtg ccgctttttg tgccgcctgc ggctgagctg
    20161 atacctgaat cggcggtgcc ggccaggtaa tttcgcccgc acggatcacg gtcacgcggc
    20221 gaatcaccac atcatcaaaa tcaacagtga tattgccgtc tttctctttg cacaacagtt
    20281 tcagcagatt aacgaggtta gtaccgtaaa gctgcgagga ttgcgtcggc agacggcccg
    20341 gaagatcggt ataaccaatc actttgacac cattttccgt agtgaagatt tcacccggca
    20401 cggtgtattc acagttgcca ccgttttggg ctgccaggtc gacaatcaca ctgcccgtct
    20461 tcatggagtc aaccatttca cgggtaatta gcttcggcgc tggtttgcct ggaataagcg
    20521 cggtggtgac aatgatatcg acctcttttg cctgggcggc aaagagttcc atttccgctt
    20581 taatgaacgc gtccgacatc actttggcat agccatcgcc gctgcccgct tcctctttaa
    20641 aatccagctc gaggaattcc gcgcccatac tttgaacttg ttctttcact tccggacggg
    20701 tgtcgaatgc acgcacaatc gcgccgagac tgtttgctgc gccaatggcg gccagacctg
    20761 caacacccgc accaatcacc atcacttttg ccggtggcac tttcccggcc gcagtaattt
    20821 gcccggtaaa gaagcgccca aattcatgtg ccgcttcaac aatggcgcga taaccggcga
    20881 tgttcgccat cgagcttagt gcgtccagcg attgtgcgcg tgagatacgc ggcacagaat
    20941 ccatcgccat cacggtcacg ttacgttccg caagtttttg cattaattcc ggattctgcg
    21001 caggccagat aaaactcacc agcgttgtcc caggattcag taacgcaatt tcatcatcta
    21061 acggcgcatt gaccttcaga atgatctctg actgccagac gctattccct tctacaattt
    21121 cagcgcccgc ttgcacaaac gctttatcgt caaaacttgc cagttgaccc gcgccgctct
    21181 ctaccgcgac ggtaaaaccc agtttcagca gctgttccac tgtttttggc gttgctgcaa
    21241 cacgggtttc attggttaac cgttctcttg gtatgccaat tcgcatgata ttcccttcca
    21301 tcggttttat tgatgatggt ttgcctgtgt caggagccac acaagccgct catgtacgag
    21361 ctaaatgtta ctccgttaaa ataaattagt aacaaacgcc ctataacgta ctgaaaatta
    21421 tgcctgtgat ctagcgccaa aaatcagtat ttcggtgtga actcgcaaaa tattaacgat
    21481 tcagccgtga tagtgggata aacaccttag aacgccggat aaagactgat aattgtcttc
    21541 gacggtcggg taaaacgaga catcgccccg gcacgattca ctacttaaca ttaaattaac
    21601 ttatacaatt cagttgcttc agtagtaatg atgctgatac ggctgttttt taagcataga
    21661 cggtcatttg agcaggatta aaattggctt aaggaatgtg atatgaaaaa tgacgcagac
    21721 agttacaccg tttaaatgca ataatcagcc acgtttctcg ttaataacaa taccagtacc
    21781 tggtttgcgc aaggcgaagg attattttta tgaagcttaa gaacaccctc ctggcgtcgg
    21841 cactgctttc tgctacggca ttctccgtta acgcagcaac agaactgaca ccggagcaag
    21901 cggcagcggt taaacctttt gaccgtgtag tggttaccgg tcgttttaat gctattggcg
    21961 aagcggtgaa agccgtttct cgtcgcgcag ataaagaagg tgccgcctct ttttatgttg
    22021 tcgacacttc tgattttggt aacagcggta actggcgtgt ggtcgctgac ctctataaag
    22081 ccgatgctga aaaagcagaa gaaacaagta atcgcgtaat taacggtgtt gtcgaactgc
    22141 cgaaagatca ggctgttctg attgaaccgt ttgacacggt caccgtccag ggcttctatc
    22201 gtagccagcc agaagtcaat gatgccatca ccaaagcggc aaaagcgaaa ggtgcctact
    22261 ctttctacat cgttcgtcaa atcgatgcca accagggcgg caaccagcgt attactgcat
    22321 tcatctataa aaaagatgct aagaaacgta tcgtccagag cccggatgtg atcccggcag
    22381 attccgaagc aggacgtgca gctctggctg ccggtggcga agccgcgaag aaagttgaga
    22441 tcccaggtgt tgcgactacc gcatcaccaa gttctgaagt cggtcgtttc tttgaaaccc
    22501 agtcatcaaa aggcgggcgt tacaccgtca cgctcccgga tggcactaaa gtcgaagaac
    22561 tgaacaaagc gaccgcagcg atgatggtcc cgttcgatag catcaaattc tctggcaact
    22621 acggcaacat gaccgaagtc tcctatcagg ttgcgaaacg tgccgcgaag aaaggtgcta
    22681 agtattacca catcacccgc cagtggcagg aacgtggtaa taacctgacc gtcagcgcag
    22741 atctgtataa ataactattc agttactcct ataaggcggc ttgatgccgc ctttcgcatt
    22801 tttagtcaca aatttccccg cgaccattgc atgcagacac atctcttcgt aaaatcccgc
    22861 gcttcagtgg caaactccat ttttatgcgt tttgccctaa tatttattct tcttatcacg
    22921 ttttaatcac tggatatcga tggaaaagaa actgggactg agcgcactca ccgcgctggt
    22981 attaagctca atgctgggcg cgggtgtttt cagtctgccg caaaatatgg cggcagttgc
    23041 cagcccggca gcactgctca tcggctgggg tattactggc gctggcattt tattgctggc
    23101 ctttgccatg ctgatcctca cgcgcattcg tcccgaactt gacggcggta tctttaccta
    23161 tgcccgcgaa gggtttggcg agctaatcgg cttttgttcc gcatggggat actggctgtg
    23221 cgcagtcatc gccaacgtct cctatctggt gatcgttttt tccgcgttaa gcttttttac
    23281 ggacacgccg gaattgcgcc tgttcggcga tggtaatacc tggcaatcga tcgtcggtgc
    23341 atcggcttta ttgtggattg ttcacttttt gatcctgcgc ggggtgcaaa ccgctgccag
    23401 cattaacctg gtggcgacac tggcaaaatt gttgccgctg ggtctgtttg ttgtgctggc
    23461 gatgatgatg ttcaaactgg ataccttcaa gctcgacttc accggacttg tacttggcgt
    23521 acccgtttgg gaacaggtga aaaacaccat gctgatcacc ctgtgggttt tcattggtgt
    23581 ggaaggtgcc gtggttgttt ctgcgcgtgc gcgtaataaa cgtgatgttg gcaaagcgac
    23641 actgctggcg gttctctccg ctctgggcgt ttacttgctg gtaacgctgc tttcgctggg
    23701 tgtggtggca cgtcctgaac tggctgaaat tcgtaacccg tcaatggccg gtctgatggt
    23761 ggaaatgatg ggaccatggg gcgaaatcat catcgctgcc agtttgatcg tttccgtttg
    23821 cggcgcgtac ttaagctgga ccatcatggc ggcagaagtt ccgttcctgg ctgccactca
    23881 taaagcattc ccacgcattt ttgcgcgcca gaacgcacaa gctgcgccat ccgcctcact
    23941 gtggttgacc aacatctgcg tgcaaatttg tctggtactc atctggctga ccggttccga
    24001 ttacaacacg ttgctgacca tcgcctcaga aatgattctg gtgccctatt tcctggtcgg
    24061 cgcgttcttg ctgaaaatcg caacccgtcc actgcataaa gcggtaggtg tcggtgcctg
    24121 catttatggc ttatggttat tgtacgcctc tggtccaatg cacttgctgt tatccgttgt
    24181 tctgtatgcg ccggggctgc tggttttcct gtatgcgcgc aaaacgcata cacatgataa
    24241 tgtactgaac cgtcaggaaa tggtgctgat tggcatgctg ttaattgcct cagttccggc
    24301 gacctggatg ctggtgggat aacgttcatc ccatcgttgg atagcaaagg agataacgat
    24361 gggtaaagcc cagcccttgc caatattaat tactggcgga ggtcgtcgca tcggcctcgc
    24421 cctcgcctgg catttcatta atcaaaagca accggtgatt gtcagctatc ggacgcacta
    24481 tccagccatt gatggactga ttaaggcagg tgcgcagtgt attcaggctg atttttcgac
    24541 caacgacggt gtgatggcgt ttgccgatga agtactaaaa agcacctatg gtctgcgtgc
    24601 tattttgcat aacgccagtg cgtggatggc ggaaaaaccg ggtgcgccac tggccgacgt
    24661 actggcttgc atgatgcaga tccacgttaa taccccatac ctgctcaacc atgcgctgga
    24721 aagattactg cgtgggcacg gacacgccgc cagcgatatc attcacttta ccgattatgt
    24781 ggtggagcgc ggtagcgaca agcatattgc gtatgctgca agcaaagcgg cactggataa
    24841 tatgacccgc tcgtttgccc gcaagctggc accggaagtg aaagtgaatt ctattgctcc
    24901 atcgctgatc ctgtttaatg aacatgatga tgccgaatat cgacaacagg cgctgaataa
    24961 atcactgatg aaaaccgcgc ctggcgagaa agaagtgatc gacctggtcg attacttact
    25021 taccagttgc tttgtcaccg gacgcagttt cccacttgat ggcggtcgtc atctgcgtta
    25081 atgcagcttt atccagcata taatcaacac ccatgcgctt atcccccaac acgcaacaga
    25141 accaacaaaa gcggcgggca agcgcatcat tccggtgaaa taccacagcg acaccaggta
    25201 aacaaaatag ggaataatcg accacatact aaaaatgatg gttgcgcgta aggcttcaat
    25261 gccgcgttcg ctggcaacaa tataatgcgc gataagcgca aaggtcggga aaagtggaat
    25321 cagcccggcg atataataat ttttcgtttt tgctaaaaca ccaatcaaca gcactaccag
    25381 cgcaccgagc gcggctttga ttaccagccc cattttttac cttaacactt ccataacaag
    25441 tcatcagtag aatacctgat gaaaacttgt ttagaaacga ttgatagtaa gtaaaaacag
    25501 cgcggtgtat tgtgacgttt ttatatctac cgtgaatgtt atgaacacta tcgtatttgt
    25561 ggaagatgat gcggaagtcg gttcactgat tgccgcgtac ctggcaaaac atgatatgca
    25621 ggttaccgta gagccgcgcg gcgaccaggc cgaagaaacc attttgcgag aaaatccgga
    25681 tttggtgtta ctcgacatca tgctaccagg caaggacggc atgaccattt gtcgtgattt
    25741 acgcgcaaag tggtctggac cgattgttct tctaacctct ctcgatagcg atatgaacca
    25801 catcctggca ctggaaatgg gtgcctgcga ctatattctc aaaacgatgc cccctgctgt
    25861 tttgctagcg cgtttacgtt tgcatttgcg tcagaatgag caagccacac tgaccaaagg
    25921 tcttcaggaa acgtctctga cgtctctgac tccctacaaa gccctgcatt tcggcacgtt
    25981 gaccatcgat cccatcaacc gcgtagtcac cctggctaac actgaaatct cgctctcgac
    26041 agctgatttc gaattattgt gggaattagc tacccatgcc gggcaaatca tggaccgcga
    26101 tgcattgctg aaaaatttac gcggcgtcag ttatgacgga ctggatcgta acgtggacgt
    26161 ggctatttcg cggttaagaa aaaaactgct cgataacgcc gcagaacctt atcgcattaa
    26221 aactgtgcgt aacaaaggct atctttttgc gcctcatgca tgggaataag cgatgaaaaa
    26281 actgtttatc cagttttacc tgttattgtt tgtctgcttc cttgtgatgt ctctgctggt
    26341 tgggttggtg tacaaattta ccgccgaacg cgcgggcaaa cagtcgctgg atgatttgat
    26401 gaacagtttg ctgtatctga tgcgcagcga attgcgtgag atccccccac acgactgggg
    26461 taagacgctg aaagagatgg atttaaatct ctctttcgat ctgcgtgtcg agccactgag
    26521 taaataccat cttgatgata tttccatgca ccgactgcgt ggcggcgaaa ttgtcgccct
    26581 ggacgatcag tacacgtttt tgcagcgtat cccgcgcagc cactacgtgc tggcagttgg
    26641 tcctgttcct tatctttatt atctccatca gatgcgattg ctggatatcg ccctgatcgc
    26701 ttttattgct atttccctcg cctttccggt gtttatctgg atgcgtccgc actggcagga
    26761 tatgttaaaa ctggaagcag cggcgcaacg atttggcgat gggcatctct atgagcgtat
    26821 ccactttgat gagggttcga gctttgaacg acttggtatc gcatttaacc agatggcgga
    26881 caatatcaac gccttgattg ccagcaaaaa acagcttatt gacggtatcg ctcacgaact
    26941 gcgaacaccg ttagtgcgcc tgtgttatcg actggagatg agcgataacc tgagcgccgc
    27001 cgagtcccag gcgttgaatc gtgatatcag tcaacttgaa gctttaattg aagagctgct
    27061 gacttatgcc cgactcgatc gcccacaaaa cgagcttcat cttagcgaac cagacctgcc
    27121 gttgtggctg tcaacgcatc tggcagatat tcaggcagta acgcccgata aaacggtacg
    27181 gataaaaacg ctcgtgcaag gccattatgc ggcgttggat atgcgcttaa tggagcgcgt
    27241 gctggataat ttgctcaata acgccctgcg gtactgccat tcaacggttg aaaccagcct
    27301 gctactgtcg gggaatagag cgacattaat tgttgaggat gatggcccag ggattgcccc
    27361 agaaaaccgc gaacatatct ttgaaccttt tgttcgcctc gatcccagcc gggatcgctc
    27421 aaccggcggc tgcgggctgg ggctggcaat tgtccactct atagcactgg caatgggcgg
    27481 tacggttaat tgtgacacca gcgaactggg tggtgctcgc ttctcgttta gctggccgtt
    27541 atggcataac atcccgcaat ttacctctgc ctgacactac gcgcacgatg gtgaagtcac
    27601 caccattgtg ctataaatta aggatgttgt aactaaagtg gttaatatta tggcgcgtta
    27661 cgatctcgta gaccgactca acactacctt tcgccagatg gaacaagagc tggctgcatt
    27721 tgccgctcat cttgagcaac acaagctatt ggttgcccgc gtgttctctt tgccggaggt
    27781 aaaaaaagag gatgagcata atccgcttaa tcgtattgag gtgaaacaac atctcggcaa
    27841 cgacgcgcag tcgctggcgt tgcgtcattt ccgccattta tttattcaac aacagtccga
    27901 aaatcgcagc agcaaagccg ctgtccgtct gcctggcgtg ttgtgttacc aggtcaataa
    27961 cctttcgcaa gcagcgttgg tcagtcatat tcagcacatc aataaactca agaccacgtt
    28021 cgagcatatc gtcacggttg agtcagaact ccccaccgcg gcacgttttg aatgggtgca
    28081 tcgtcatttg ccggggctga tcacccttaa tgcttaccgc tcgctcaccg ttctgcacga
    28141 ccccgccact ttacgttttg gctgggctaa taaacatatc attaaaaatt tgcatcgtga
    28201 tgaagtcctg gcacagctgg aaaaaagcct gaaatcacca cgcagtgtcg caccgtggac
    28261 gcgcgaggag tggcaaagaa aactggagcg agagtatcag gatatcgctg ccctgccaca
    28321 gaacgcgaag ttaaaaatca aacgtccggt gaaggtgcag ccgattgccc gcgtctggta
    28381 caaaggagat caaaaacaag tgcaacacgc ctgccctaca ccgctgattg cactgattaa
    28441 tcgggataat ggtgcgggcg tgccggacgt tggtgagttg ttaaattacg atgcagacaa
    28501 tgtgcagcac cgttataaac ctcaggcgca gccgcttcgt ttgatcattc cacggctgca
    28561 cctgtatgtt gcagattaac gcccggcttt catactgccg accatctgtt ctggccgtac
    28621 ccagctgtca aactcggctt cgctaagata ccccagcgca agggccgcag cttttaaggt
    28681 cagcccttct ttatgcgctt ttttggcgat ctccgcggct ttgtcataac caatgtgggt
    28741 gttaagcgca gtcaccagca tcagcgattc attgagtaat tgattgattc gctcacgatt
    28801 cggttcaata cccactgcgc agtgtttgtt aaaactttcc atgccatctg ccagcaagcg
    28861 caccgattgc aggaaattat ggatcaccat cggacggaag acgttcagtt caaagttacc
    28921 agaagcgcca cccatgttga tcgccacgtc gttccccatt acctgacagc agagcatggt
    28981 taatgcttca cactgggttg ggttcacttt ccccggcatg attgagctgc ccggctcatt
    29041 ttccgggatt gagatttcac caattccgca gcgcgggcca gaggccagcc agcggacatc
    29101 attggcgatt ttcatcagtg acgcagccaa ccctttcaac gcgccgtgcg cctgaaccag
    29161 ggcatcacag gtcgcaagcg cttcaaattt gttcggcgcg gtaacaaacg gtgcacaggt
    29221 aatgactgcc agttcatctg ctacgcgacg cgcatactcc ggatgggtat ttagtccagt
    29281 acccaccgct gtaccgccaa gagccagttc cgctacgtga ggcaggctgt attcgatatg
    29341 tttgagatta tgctcgagca tcgctaccca gccggaaatc tcctgcccta gtgttagcgg
    29401 cgtggcgtcc tgcaagtggg ttcgaccgat tttgacgata tcggcaaatg cacgcgattt
    29461 ttcactcagt gtctgtgtca gggttttaag ctgcggaatg agttgcttgc gcagcgccag
    29521 cagcgccgca acgtgcatcg ccgtcggaaa gacatcgttg gaactttggc ttttgttcac
    29581 gtcgtcgtta gggtgaactt tacgttccat cccgcgcacg ccgccgagta attcactggc
    29641 ccggttagcc agcacttcgt tcatgttcat gttactttgc gtgccggagc cggtctgcca
    29701 gatagccagc gggaattcgt cgtcatgctg tcctgccagt acttcatccg ccgcctgccg
    29761 aatggcgctc gctttctctt cagacaacaa gcctaaatct tcattaactt ttgccgctgc
    29821 gcgcttggtt agcgccagcg catgaatcag tgaggtgggc attttctccg tcgaaatgcg
    29881 gaaatgctcc agcgagcgtt gagtttgtgc gccccacagc ttatctgccg ggacatcaat
    29941 cgcccccatc gaatcttttt cgctgcgtac tgtattcatg gcctgctcct cacctgttta
    30001 attttttctt tctgttttgc tttcgttaag caacttttag ctcacttatt atttactatt
    30061 tgataacaaa tgtttggtct ttcgtgccat gtaaaaaaac cgccccgaag ggcggctctg
    30121 tttatttcac acagcgagtg cactgtgtga gttgtatctg ctggaagaag tcatttcctt
    30181 tatcatccac aaggataaac gccgggaaat cttccacttc aattttccag atggcttcca
    30241 ttcccagttc cggatattca acacattcca ggctcttaat acttccctgc gccaatacag
    30301 cggccggacc accgatactg ccaaggtaga agccgccgtg ttttttacag gcatccgtca
    30361 cctgctggct gcggttgcct ttcgccagca tgatcatact tccgccctgc gcttgcagtt
    30421 gatcgacata agaatccatc cgtccggcgg tcgttgggcc aagagaaccg gaggcataac
    30481 cttccggcgt tttggccgga cccgcgtagt aaatcggatg atctttaatg tactgcggca
    30541 gcccttcacc gttatccatc cgctctttca gtttggcgtg agcaatatca cgaccgacga
    30601 taatcgtgcc gttaagcgat aagcgtgtag aaacgggata ctgcgacaac tgtgcgagga
    30661 tctctttcat cggacggtta aggtcaacgc gcaccgcttc gccttctccc gctttacgca
    30721 gctcttcagg gatatattta cctggattat gttccagttt ttcgatccag atcccctgac
    30781 ggttgatctt cgctttgata ttacggtcag cagagcagga aacacccata ccaaccggac
    30841 aggatgcgcc gtgacgtggc aggcgaatca cgcgtatgtc gtgagcgaag tatttaccac
    30901 caaactgcgc acccagaccg agattttgcg cttcgatcag caattctttt tccagttcca
    30961 catcgcggaa tgcctgaccg tgctcattcc cttccgttgg cagttcgtca tagtatttag
    31021 cggaagccag tttcactgtt ttaaggttag tttctgcaga agttccacca attacgaacg
    31081 caatatgata cggaggacag gccgccgtac ccagcgtgcg catcttctca accaggtaat
    31141 ttttcagttt ccccggcgtt agtaacgctt tggtttcctg atagagatac gtcttgtttg
    31201 ccgaaccacc acctttggcg atacagagga atttgtactc gtcgccatca acggcataaa
    31261 gatcgatctg cgctggcaga ttggtgccgg tattcacctc tttatacata tccagcggcg
    31321 cgttttgcga gtagcgcaaa ttatcttcga tataagtgtt atagacaccg cgcgccagcg
    31381 ccgcttcatc acagccaccg gtccatacac gctgcccttt tttaccaaca ataatcgcag
    31441 tgccggtatc ctgacaggtt ggcagaacac ctttcgccgc gatgtcggag ttgcgcagga
    31501 attgcagcgc cacatattta tcattttcgc tggcttccgg gtcacgcaga atgtcggcca
    31561 cctgttgttg gtgagccgga cgcagcataa atgacgcatc atgaaacgcc tgacgcgcca
    31621 acagagttaa cgcttcgggt gcgactttca aaatctcctg cccttcaaat tcagatacgc
    31681 taacgtgttc gctggttagc aggtaatact cagtatcatc ttttttgagt ggaaaaggag
    31741 cctgataatg aaagggtttg tttgacattg ttctctcact tactgcctgg tttggttatg
    31801 ctctgggcgg gtgttccgtt gccctgttaa aagcgagtaa caatatccta cacgcttttt
    31861 taacaaaaac tgagactagt acgacttttt gcggctccag gttacttccc gtaggattct
    31921 tgctttaata gtgggattaa tttccacatt aaaacaggga ttgatcatgc aaaaactcat
    31981 taactcagtg caaaactatg cctggggcag caaaacggcg ttgactgaac tttatggtat
    32041 ggaaaatccg tccagccagc cgatggccga gctgtggatg ggcgcacatc cgaaaagcag
    32101 ttcacgagtg cagaatgccg ccggagatat cgtttcactg cgtgatgtga ttgagagtga
    32161 taaatcgact ctgctcggag aggccgttgc caaacgcttt ggcgaactgc ctttcctgtt
    32221 caaagtatta tgcgcagcac agccgctctc cattcaggtt catccaaaca aacgcaattc
    32281 tgaaatcggt tttgccaaag aaaatgccgc aggtatcccg atggatgccg ccgagcgtaa
    32341 ctataaagat cctaaccaca agccggagct ggtttttgcg ctgacgcctt tccttgcgat
    32401 gaacgcgttt cgtgagtttt ccgagattgt ctccctactc cagccagtcg caggtgcaca
    32461 tccggcaatt gctcactttt tacaacagcc taatgccgaa cgtttaagcg aactgttcgc
    32521 cagcctgttg aatatgcagg gtgaagaaaa atcccgcgcg ctggcgattt taaaatcggc
    32581 gctcgacagt cagcagggtg aaccgtggca aacgattcgt ttaatttctg aattttaccc
    32641 ggaagacagc ggcctgttct ccccgctgtt actgaatgtg gtgaaattga atcctggcga
    32701 agcgatgttc ctgttcgctg aaacaccgca cgcttacctg caaggcgtgg cgctggaagt
    32761 gatggcgaac tccgataacg tgctgcgtgc gggtctgacg cctaagtaca ttgatattcc
    32821 ggaactggtt gccaatgtaa aattcgaagc caaaccggct aaccagttgt tgacccagcc
    32881 ggtgaaacaa ggtgcagaac tggacttccc gattccagtg gatgattttg ccttctcgct
    32941 gcatgacctt agtgataaag aaaccaccat tagccagcag agtgccgcca ttttgttctg
    33001 cgtcgaaggc gatgcaacgt tgtggaaagg ttctcagcag ttacagctta aaccgggtga
    33061 atcagcgttt attgccgcca acgaatcacc ggtgactgtc aaaggccacg gccgtttagc
    33121 gcgtgtttac aacaagctgt aagagcttac tgaaaaaatt aacatctctt gctaagctta
    33181 ttaaaggctt ataacacctt caggcggcca gtccgcctga tttcatttta tggataatca
    33241 ttatgaataa atcgctggta gcggtaggcg tcattgttgc gctaggcgta gtctggacag
    33301 gcggcgcatg gtatacaggc aagaagattg aaacccatct cgaagacatg gtcgcgcagg
    33361 cgaacgcgca actcaaactg acagctcctg aatccaacct ggaagtgagt tatcaaaact
    33421 atcatcgcgg cgtattcagc agccagttgc aactgttggt gaaacccatt gccgggaaag
    33481 aaaatccgtg gattaaaagc ggtcagagcg tcatcttcaa cgaatcggtt gatcatggtc
    33541 ccttcccgct tgcccagctt aaaaaactga acctgatccc gtcgatggca tcaattcaaa
    33601 ccacgctggt taataacgaa gtaagcaaac cactgtttga tatggcaaaa ggtgaaacgc
    33661 cttttgagat taactcgcgc attggttaca gcggtgattc cagttccgat atttcgctca
    33721 agccactgaa ttacgagcaa aaggatgaaa aagtcgcctt tagcggcggc gagttccagt
    33781 taaatgctga cagagacggc aaagccatct ccctttccgg ggaggcgcaa agtggtcgga
    33841 tagacgcagt taacgaatac aaccagaaag tgcagttgac ctttaataat ctgaaaaccg
    33901 acggttccag cacgctggca agttttggtg agcgcgtagg aaaccaaaaa ctgtcactgg
    33961 aaaaaatgac catttcagtg gaaggcaaag aactggcact gctggaaggc atggagatca
    34021 gcggtaaatc ggatctggtc aatgacggta aaacgatcaa tagccaactg gattactcgc
    34081 taaacagcct gaaggtacag aatcaggatc tgggcagcgg caagctgact ttaaaagtcg
    34141 gccagattga tggtgaagcc tggcatcagt tcagccagca atataacgcg caaactcagg
    34201 cgctgctggc acagccagaa attgccaaca atcccgaact ttatcaggag aaagtgacgg
    34261 aagccttctt tagcgccctg ccgctgatgt tgaaaggcga tccggtgatt actgtcgcgc
    34321 cgctaagctg gaaaaacagt cagggtgaaa gtgcgctgaa tctgtcgctg ttcctgaaag
    34381 atccggcaac gactaaagaa gcgccgcaaa cgctggcgca ggaagtagat cgttcggtta
    34441 aatctctgga tgcgaaactg accattccgg tggatatggc aactgagttt atgactcagg
    34501 tagcgaagct ggaaggttat caggaagatc aagcgaaaaa actggcgaaa cagcaagttg
    34561 aaggtgcatc agcaatgggg cagatgttcc gtctgaccac cttgcaggac aataccatca
    34621 ccaccagcct gcaatatact aacggtcaga taacgttaaa tgggcagaaa atgtcgttag
    34681 aagattttgt tggcatgttt gcgatgccag ctcttaacgt tccggctgta ccggcaattc
    34741 cgcagcagta attcacggcc aaaacgccgg agaattttca cttcggcgtt ttcatctgaa
    34801 aacaaaccag agattgcctg atgcgctacg cttatcaggc ctaccttttc ctgcaacact
    34861 ttgaatttat ga
//
LOCUS       DADMHM010000021        34685 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.022, whole genome shotgun sequence.
ACCESSION   DADMHM010000021 DADMHM010000000
VERSION     DADMHM010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 34685)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34685)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34685
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.022"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            191..2038
                     /gene="ldtD"
                     /locus_tag="JN125_000869"
     CDS             191..2038
                     /gene="ldtD"
                     /locus_tag="JN125_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HAY8870733.1"
                     /translation="MLLNMMCGRRLSAISLCLAVTFAPLFNAQADEPEVIPGDSPVAV
                     SEQGEALPQAQATAIMAGIQPLPEGAAEKARTQIESQLPAGYKPVYLNQLQLLYAARD
                     MQPMWENRDAVKAFQQQLAEVAIAGFQPQFNKWVELLTDPGVNGMARDVVLSDAMMGY
                     LHFIANIPVKGTRWLYSSKPYALATPPLSVINQWQLALDKGQLPTFVAGLAPQHPQYA
                     AMHESLLALLSDTKPWPQLTGKATLRLGQWSNDVPALREILQRTGMLDGGPKITLPGD
                     DTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGL
                     GADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTELSTGIMVNIPAYSLVYYQNG
                     NQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESH
                     GYTVMRGWNSREAIDPWQVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYL
                     HDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDAGWNDKRISDALKQGDTRYVNI
                     RQSIPVNLYYLTAFVGADGRTQYRTDIYNYDLPARSSSQIVSKAEQLIR"
     gene            2219..2767
                     /locus_tag="JN125_000870"
     CDS             2219..2767
                     /locus_tag="JN125_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcbK family protein"
                     /protein_id="HAY8870734.1"
                     /translation="MDKFDANRRKLLALGGVALGAAILPTPAFATLSTPRPRILTLNN
                     LHTGESIKAEFFDGRGYIQEELAKLNHFFRDYRANKIKSIDPGLFDQLYRLQGLLGTR
                     KPVQLISGYRSIDTNNELRARSRGVAKKSYHTKGQAMDFHIEGIALSNIRKAALSMRA
                     GGVGYYPRSNFVHIDTGPARHW"
     gene            2794..3441
                     /gene="gloC"
                     /locus_tag="JN125_000871"
     CDS             2794..3441
                     /gene="gloC"
                     /locus_tag="JN125_000871"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003035823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase GloC"
                     /protein_id="HAY8870735.1"
                     /translation="MNYRIIPVTAFSQNCSLIWCEQTRLAALVDPGGDAEKIKQEVDD
                     SGLTLMQILLTHGHLDHVGAAAELAQHYGVPVFGPEKEDEFWLQGLPVQSRMFGLEEC
                     QPLTPDRWLNEGDTISIGNVTLQVLHCPGHTPGHVVFFDDRAKLLISGDVIFKGGVGR
                     SDFPRGDHNQLISSIKDKLLPLGDDVTFIPGHGPLSTLGYERLHNPFLQDEMPVW"
     gene            complement(3663..4853)
                     /locus_tag="JN125_000872"
     CDS             complement(3663..4853)
                     /locus_tag="JN125_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009653304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/tyrosine/aromatic aminotransferase"
                     /protein_id="HAY8870736.1"
                     /translation="MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTP
                     VLTSVKKAEQYLLENETTKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPG
                     GTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFD
                     ALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFA
                     RGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMK
                     AAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGA
                     NRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAI
                     VAVL"
     gene            complement(5038..6126)
                     /gene="ompF"
                     /locus_tag="JN125_000873"
     CDS             complement(5038..6126)
                     /gene="ompF"
                     /locus_tag="JN125_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpF"
                     /protein_id="HAY8870737.1"
                     /translation="MMKRNILAVIVPALLVAGTANAAEIYNKDGNKVDLYGKAVGLHY
                     FSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNK
                     TRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVAT
                     YRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADR
                     TNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKT
                     QDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVD
                     YIINQIDSDNKLGVGSDDTVAVGIVYQF"
     gene            complement(6727..8127)
                     /gene="asnS"
                     /locus_tag="JN125_000874"
     CDS             complement(6727..8127)
                     /gene="asnS"
                     /locus_tag="JN125_000874"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HAY8870738.1"
                     /translation="MSVVPVADVLQGRVAVDSEVTVRGWVRTRRDSKAGISFLAVYDG
                     SCFDPVQAVINNSLPNYNEDVLRLTTGCSVIVTGKVVASPGQGQQFEIQASKVEVAGW
                     VEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWV
                     STPLITASDTEGAGEMFRVSTLDLENLPRNDQGKVDFDKDFFGKESFLTVSGQLNGET
                     YACALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFANLNDIAGLAEAMLKYVFKA
                     VLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENCGRKFENPVYWG
                     VDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIG
                     GSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQN
                     VRDVIPFPRTPRNASF"
     gene            complement(8296..9498)
                     /gene="pncB"
                     /locus_tag="JN125_000875"
     CDS             complement(8296..9498)
                     /gene="pncB"
                     /locus_tag="JN125_000875"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706850.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HAY8870739.1"
                     /translation="MTQFASPVLHSLLDTDAYKLHMQQAVFHHYYDVHVAAEFRCRGD
                     DLLGIYADAIREQIQAMQHLRLQDDEYQWLSALPFFKADYLNWLREFRFNPEQVTVSN
                     DNGKLDIRLSGPWREVILWEVPLLAVISEMVHRYRSPQADVAQALDTLESKLVDFSAL
                     TAGLDMSRFHLMDFGTRRRFSREVQETIVKRLQQESWFVGTSNYDLARRLSLTPMGTQ
                     AHEWFQAHQQISPDLANSQRAALAAWLEEYPDQLGIALTDCITMDAFLRDFGVEFASR
                     YQGLRHDSGDPVEWGEKAIAHYKKLGIDPQSKTLVFSDNLDLRKAVELYRHFSSRVQL
                     SFGIGTRLTCDIPQVKPLNIVIKLVECNGKPVAKLSDSPGKTICHDKAFVRALRKAFD
                     LPHIKKAS"
     gene            9764..12376
                     /gene="pepN"
                     /locus_tag="JN125_000876"
     CDS             9764..12376
                     /gene="pepN"
                     /locus_tag="JN125_000876"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000193787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase N"
                     /protein_id="HAY8870740.1"
                     /translation="MTQQPQAKYRHDYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVR
                     HGASDAPLRLNGEDLKLVSVHINDEPWTAWKEEEGALVISNLPEHFTLKIVNEISPAA
                     NTALEGLYQSGDALCTQCEAEGFRHITYYLDRPDVLARFTTKIIADKTKYPFLLSNGN
                     RVAQGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRG
                     NLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYV
                     LARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDL
                     GSRAVNRINNVRTMRGLQFAEDASPMAHPIRPDMVIEMNNFYTLTVYEKGAEVIRMIH
                     TLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDASNVDLSHFRRWYSQSGTPIVTV
                     KDDYNPETEQYTLTISQRTPATPDQAEKQPLHIPFAIELYDNEGKVISLQKGGHPVNS
                     VLNVTQAEQTFVFDNVYFQPVPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWD
                     AAQSLLATYIKLNVARHQQGQPLSLPVHVADAFRAVLLDEKIDPALAAEILTLPSVNE
                     MAELFDIIDPIAIAEVREALTRTLATELADELLAIYNANYQSEYRVEHEDIAKRTLRN
                     ACLRFLAFGETHLADVLVSKQFHEANNMTDALAALSAAVAAQLPCRDALMQEYDDKWH
                     QDGLVMDKWFILQATSPAANVLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAFH
                     AEDGSGYQFLVEMLTDLNSRNPQVASRLIEPLIRLKRYDAKRQEKMRAALEQLKGLEN
                     LSGDLYEKITKALA"
     gene            complement(12419..13170)
                     /gene="ssuB"
                     /locus_tag="JN125_000877"
                     /pseudo
     CDS             complement(12419..13170)
                     /gene="ssuB"
                     /locus_tag="JN125_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309043.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic sulfonates ABC transporter ATP-binding
                     protein"
     gene            complement(13167..13958)
                     /gene="ssuC"
                     /locus_tag="JN125_000878"
                     /pseudo
     CDS             complement(13167..13958)
                     /gene="ssuC"
                     /locus_tag="JN125_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415454.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aliphatic sulfonate ABC transporter permease
                     SsuC"
     gene            complement(13969..15114)
                     /gene="ssuD"
                     /locus_tag="JN125_000879"
                     /pseudo
     CDS             complement(13969..15114)
                     /gene="ssuD"
                     /locus_tag="JN125_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706856.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FMNH2-dependent alkanesulfonate monooxygenase"
     gene            complement(15111..16070)
                     /locus_tag="JN125_000880"
     CDS             complement(15111..16070)
                     /locus_tag="JN125_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfonate ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY8870741.1"
                     /translation="MRNIIKLALVGLLSVSTIAVAAESSPEALCIGYQKGSIGMVLAK
                     SHQLLEKRYPQSKISWVEFPAGPQMLEALNVGSIDLGSTGDIPPIFAQAAGADLVYVS
                     VEPPKPKAEVILVAENSPIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQP
                     TYLTPADARAAFQQGNVDAWAIWDPYYSAALLQGGVRVLKDGTDLNQTGSFYLAARPY
                     AEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMGLPAPVIASYLDHRPPTTIKP
                     VNAEVAALQQQTADLFYENRLVPKKVDIRQRIWQPTQLEGKQL"
     gene            complement(16063..16638)
                     /gene="ssuE"
                     /locus_tag="JN125_000881"
     CDS             complement(16063..16638)
                     /gene="ssuE"
                     /locus_tag="JN125_000881"
                     /EC_number="1.5.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent FMN reductase"
                     /protein_id="HAY8870742.1"
                     /translation="MRVITLAGSPRFPSRSSSLLEYAREKLNGLDVEVYHWNLQNFAP
                     EDLLYARFDSPALKTFTEQLQQADGLIVATPVYKAAYSGALKTLLDLLPERALQGKVV
                     LPLATGGTVAHLLAVDYALKPVLSALKAQEILHGVFADDSQVIDYHHRPQFTPNLQTR
                     LDTALETFWQALHRRDVQVPDLLSLRGNAHA"
     gene            16994..17536
                     /locus_tag="JN125_000882"
     CDS             16994..17536
                     /locus_tag="JN125_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415458.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HAY8870743.1"
                     /translation="MKKSVLTAFITVVCATSSVMAADDNAITDGKVTFNGKVIAPACT
                     LVAATKDSVVTLPNVSATKLQTNGAVSGVKTDVPIALEGCDVTVTKNATFTFSGTADG
                     VQPTAFANQATTDAATNVALQMYLPDGSTSVTPGTETSNIQLADSAEQTVTFKVDYIA
                     TGKATSGNVNAVTNFHINYY"
     gene            17619..18327
                     /locus_tag="JN125_000883"
                     /pseudo
     CDS             17619..18327
                     /locus_tag="JN125_000883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415459.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
     gene            18352..20951
                     /locus_tag="JN125_000884"
                     /pseudo
     CDS             18352..20951
                     /locus_tag="JN125_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706863.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial biogenesis usher protein"
     gene            20942..22012
                     /locus_tag="JN125_000885"
     CDS             20942..22012
                     /locus_tag="JN125_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HAY8870744.1"
                     /translation="MQIIFGEKCVLLLRLFFAAVLMLWCAQTAAYSGQCHTTQGNPYI
                     GVNFGVKTLEEEENTAGVVKDKFYQWNESNDYYVSCDCDKDNVRSGRWAFAADSPLVY
                     LGDNWYKINDYLAAKVLLQVKGSSPTAVPFENVGTGADTRWHICDPGGQRLGGQGASG
                     NSGSFSLKILQPFVGSVVIPPMALARLFECYNIPAGDSCTTTGTPVLVYYLSGTINSL
                     GSCSVNAGETIEVDLGDVFAANFRVVGHKPLGARTAELAIPVRCNTGNAGLVNVNLSL
                     TATTDPSYPQAIKTSRPGVGVVVTDSQNNIISPAGGTLPLSIPDDADSIARMNVYPVS
                     TTGVPPETGRFEATATVRINFD"
     gene            22024..22566
                     /locus_tag="JN125_000886"
     CDS             22024..22566
                     /locus_tag="JN125_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HAY8870745.1"
                     /translation="MKKKTIFQCVILFFSILNIHVGMAGPEQVSMHIYGNVVDQGCDV
                     ATKSALQNIHIGDFNISDFQAANTVSTAADLNIDITGCAAGITGADVLFSGEADTLAP
                     TLLKLTDTGGSGGMATGIAVQILDAQSQQEIPLNQVQPLTPLKAGDNTLKYQLRYKST
                     KAGATGGNATAVLYFDLVYQ"
     gene            22574..23089
                     /locus_tag="JN125_000887"
     CDS             22574..23089
                     /locus_tag="JN125_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415463.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HAY8870746.1"
                     /translation="MLKRIIWILFLLGLTGGCELFAHDGTVNISGSFRRNTCVLAQDS
                     KQINVQLGDVSLTRFFHGNYGPEKSFIINLQDCGTDVSTVDVTFSGTPDGVQSEMLSI
                     ESGTDAASGLAIAILDDAKILIPLNQASKDYSLHSGKVPLTFYAQLRPVNSDVQSGKV
                     NASATFVLHYD"
     gene            23055..23792
                     /locus_tag="JN125_000888"
     CDS             23055..23792
                     /locus_tag="JN125_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial chaperone"
                     /protein_id="HAY8870747.1"
                     /translation="MPARHLYFIMTNTWNRLALLIFAVLSLLVAGELRAGVVVGGTRF
                     IFPADRESISILLTNTSQESWLINSKINRPTRWAGGDASTVPAPLLAAPPLILLKPGT
                     TGTLRLLRTESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPG
                     DPLEAYQQLRWTRNSQGVQLTNPTPYYINLIQVSVNGKALSNAGVVPPKSQRQTSWCQ
                     AIAPCHVAWRAINDYDGLSAKKEQNLP"
     gene            23903..24913
                     /gene="pyrD"
                     /locus_tag="JN125_000889"
     CDS             23903..24913
                     /gene="pyrD"
                     /locus_tag="JN125_000889"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HAY8870748.1"
                     /translation="MYYPFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPA
                     KPVNCMGLTFKNPLGLAAGLDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFR
                     LVDAEGLINRMGFNNLGVDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICME
                     KIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKI
                     APDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKST
                     EIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVT
                     HI"
     gene            25087..25629
                     /gene="zapC"
                     /locus_tag="JN125_000890"
     CDS             25087..25629
                     /gene="zapC"
                     /locus_tag="JN125_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415466.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapC"
                     /protein_id="HAY8870749.1"
                     /translation="MRIKPDDNWRWYYDEEHDRMMLDLANGMLFRSRFARKMLTPDAF
                     SPAGFCVDDAALYFSFEEKCRDFNLSKEQKAELVLNALVAIRYLKPQMPKSWHFVSHG
                     EMWVPMPGDAACVWLSDTHEQVNLLVVESGENAALCLLAQPCVVIAGRAMQLGDAIKI
                     MNDRLKPQVNVDSFSLEQAV"
     gene            complement(25626..26735)
                     /gene="ycbX"
                     /locus_tag="JN125_000891"
     CDS             complement(25626..26735)
                     /gene="ycbX"
                     /locus_tag="JN125_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-N-hydroxylaminopurine resistance protein YcbX"
                     /protein_id="HAY8870750.1"
                     /translation="MATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGT
                     FITARQFPQMVRFTPSPVHDGLHLTAPDGSSAYVRFADFATQDAPTEVWGTHFTARIA
                     PDAINKWLSGFFSREVQLRWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQ
                     RCPASVKMEQFRPNLVVSGTSAWEEDRWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQ
                     KHPAGEPLKTLQSFRTAQDNGDVDFGQNLIARNSGVIRVGDEVEILATAPAKIYGAAA
                     ADDTANITQQPDANVDIDWQGQAFRGNNQQVLLEQLENQGIRIPYSCRAGICGSCRVQ
                     ILEGEVSPLKKSAMGDDGTILCCSCVPKTALKLAR"
     gene            26979..29087
                     /gene="rlmKL"
                     /locus_tag="JN125_000892"
     CDS             26979..29087
                     /gene="rlmKL"
                     /locus_tag="JN125_000892"
                     /EC_number="2.1.1.173"
                     /EC_number="2.1.1.264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 23S rRNA
                     (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA
                     (guanine(2445)-N(2))-methyltransferase RlmL"
                     /protein_id="HAY8870751.1"
                     /translation="MNSLFASTARGLEELLKTELENLGAVECQVVQGGVHFKGDTRLV
                     YQSLMWSRLASRIMLPLGECKVYSDLDLYLGVQAINWTEMFNPGATFAVHFSGLNDTI
                     RNSQYGAMKVKDAIVDAFTRKNLPRPNVDRDAPDIRVNVWLHKETASIALDLSGDGLH
                     LRGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGL
                     HRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNAR
                     LAGIAELITFEVKDVAQLTNPLLKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMK
                     NQFGGWNLSLFSASPDLLSCLQLRADKQYKAKNGPLDCVQKNYHVAESTPDSKPAMVA
                     EDYANRLRKNLKKFEKWARQEGIECYRLYDADLPEYNVAVDRYSDWVVVQEYAPPKTI
                     DAHKARQRLFDIIAATISVLGIAPNKLVLKTRERQKGKNQYQKLGEKGEFLEVTEYNA
                     HLWVNLTDYLDTGLFLDHRIARRMLGQMSKGKDFLNLFSYTGSATVHAGLGGARSTTT
                     VDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPTFSNSKR
                     MEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKAQEITQKT
                     LSQDFARNRQIHNCWLITAA"
     gene            29099..31006
                     /locus_tag="JN125_000893"
     CDS             29099..31006
                     /locus_tag="JN125_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAY8870752.1"
                     /translation="MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKST
                     LMKILNREQGLDDGRIIYEQDLIVARLQQDPPRNVEGSVYDFVAEGIEEQAEYLKRYH
                     DISRLVMNDPSEKNLNELAKVQEQLDHHNLWQLENRINEVLAQLGLDPNVALSSLSGG
                     WLRKAALGRALVSNPRVLLLDEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRN
                     MATRIVDLDRGKLVTYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKA
                     RRTRNEGRVRALKAMRRERGERREVMGTAKMQVEEASRSGKIVFEMEDVCYQVDGKQL
                     VKDFSAQVLRGDKIVLIGPNGCGKTTLLKLMLGQLQADSGRIHVGTKLEVAYFDQHRA
                     ELDPDKTVMDNIAEGKQEVMVNGKPRHVLGYLQDFLFHPKRAMTPVRALSGGERNRLL
                     LARLFLKPSNLLILDEPTNDLDVETLELLEELIDSYQGTVLLVSHDRQFVDNTVTECW
                     IFEGGGKIGRYVGGYHDARGQQEQYVALKQPAVKKTEEAAAAKAETVKRSSSKLSYKL
                     QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFER
                     WEYLEALKNGG"
     gene            31136..32389
                     /gene="pqiA"
                     /locus_tag="JN125_000894"
     CDS             31136..32389
                     /gene="pqiA"
                     /locus_tag="JN125_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiA"
                     /protein_id="HAY8870753.1"
                     /translation="MCEHHHAAKHILCSQCDMLVALPRLEHGQKAACPRCGTTLTVAW
                     DAPRQRPTAYALAALFMLLLSNLFPFVNMNVAGVTSEITLLEIPGVLFSEDYASLGTF
                     FLLFVQLVPSFCLITILLLVNRAELPVRLKEQLARVLFQLKTWGMAEIFLAGVLVSFV
                     KLMAYGSIGVGSSFLPWCLFCVLQLRAFQCVDRRWLWDDIAPMPELRQPLKPGVTGIR
                     QGLRSCSCCTAILPADEPVCPRCSTKGYVRRRNSLQWTLALLVTSIMLYLPANILPIM
                     VTDLLGSKMPSTILAGVILLWSEGSYPVAAVIFLASIMVPTLKMIAIAWLCWDAKGHG
                     KRDSERMHLIYEVVEFVGRWSMIDVFVIAVLSALVRMGGLMSIYPAMGALMFALVVIM
                     TMFSAMTFDPRLSWDRQPESEHEES"
     gene            32394..34034
                     /gene="pqiB"
                     /locus_tag="JN125_000895"
     CDS             32394..34034
                     /gene="pqiB"
                     /locus_tag="JN125_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706874.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intermembrane transport protein PqiB"
                     /protein_id="HAY8870754.1"
                     /translation="MESNNGEAKIQKVKNWSPVWIFPIVTALIGAWVLFYHYSHQGPE
                     VTLITANAEGIEGGKTTIKSRSVDVGVVESATLADDLTHVEIKARLNSGMEKLLHKDT
                     VFWVVKPQIGREGISGLGTLLSGVYIELQPGAKGSKMDKYDLLDSPPLAPPDAKGIRV
                     ILDSKKAGQLSPGDPVLFRGYRVGSVETSTFDTQKRNISYQLFINAPYDRLVTSNVRF
                     WKDSGIAVDLTSAGMRVEMGSLTTLLSGGVSFDVPEGLDLGQPVAPKTAFVLYDDQKS
                     IQDSLYTDHIDYLMFFKDSVRGLQPGAPVEFRGIRLGTVSKVPFFAPNMRQTFNDDYR
                     IPVLIRIEPERLKMQLGENTDVVEHLGELLKRGLRGSLKTGNLVTGALYVDLDFYPNT
                     PAITGIREFNGYQIIPTVSGGLAQIQQRLMEALDKINKLPLNPMIEQATSTFSESQRT
                     MKNLQTTLDSMNKILASQSMQQLPTDMQSTLRELNRSMQGFQPGSAAYNKMVADMQRL
                     DQVLRELQPVLKTLNEKSNALVFEAKDKKDPEPKRAKQ"
     gene            34031..34594
                     /gene="pqiC"
                     /locus_tag="JN125_000896"
     CDS             34031..34594
                     /gene="pqiC"
                     /locus_tag="JN125_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiC"
                     /protein_id="HAY8870755.1"
                     /translation="MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNR
                     LLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGW
                     VVASQPLGSVQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDG
                     YDEMVKVLAGVWSQEAASIAQEIKRLP"
BASE COUNT         8773 a         8428 c         9024 g         8460 t
ORIGIN      
        1 taacggcgcg cttttcttta aacttcttta cattaggtta tgtaaaaacg tatcggcgtt
       61 tatatactga agataagcct gatgagtaac aggcttgctc gtcatacttt cgtgagtatt
      121 ggcgttgtac aggcaagtcg taaaataaca gcctggctat tcagagtatg ataaaaacag
      181 ggggcaaggg atgttgctta atatgatgtg tggtcgtcgg ctgtcggcaa tcagtttgtg
      241 cctggccgta acattcgctc cactgttcaa tgcgcaggcc gatgagcctg aagtaatccc
      301 tggcgacagc ccggtggctg tcagtgaaca gggcgaggca ctgccgcagg cgcaagccac
      361 ggcaataatg gcggggatcc agccattgcc tgaaggtgcg gcagaaaaag cccgcacgca
      421 aatcgaatct caattacccg caggttacaa gccggtttat cttaaccagc ttcaactgtt
      481 gtatgccgca cgcgatatgc aacccatgtg ggaaaaccgt gatgctgtta aagccttcca
      541 gcaacagctg gcagaggtgg cgattgccgg tttccagccg cagtttaata aatgggtaga
      601 gttactgacc gatcctggtg ttaacgggat ggcacgcgac gtagtgctct ctgatgcgat
      661 gatgggctat ctccatttca ttgcaaatat tccggtcaaa ggcactcgct ggctatatag
      721 cagtaaacct tatgcacttg caacgccgcc gctctcggtg attaaccaat ggcagctggc
      781 gctggataaa ggtcaattgc ctacgtttgt tgcaggactg gcaccgcagc atccgcaata
      841 tgcggcgatg catgaatcgt tactggcctt actcagtgac accaaaccgt ggccccaact
      901 gaccggcaaa gcaacgttgc gcctagggca gtggagtaac gacgtaccgg cgttgcgcga
      961 aatattgcaa cgcacaggca tgttggacgg ggggccgaaa attactctac ctggcgatga
     1021 cacgccaact gacgcggtag tcagcccatc cgctgttact gttgaaacag cagaaactaa
     1081 gccgatggac aagcaaacga cgtctcgtag taaacctgcg cctgccgttc gcgccgccta
     1141 cgataatgaa ctggtggaag ccgttaaacg ttttcaggca tggcaaggat tgggggcaga
     1201 tggtgctatt ggcccggcaa cacgtgactg gttaaacgta acgcccgccc agcgtgctgg
     1261 cgtgttggct ctcaacatcc agcgattgcg cttgctgcca acagagcttt ctaccgggat
     1321 catggttaac attccggcct attcgctggt ctactatcag aacggcaatc aggtgctgga
     1381 ttcgcgagtc attgtcggtc gccccgatcg caaaacgccg atgatgagca gtgcccttaa
     1441 caacgtagtg gtaaacccgc cgtggaacgt acctccaact ctggcacgca aagatattct
     1501 gccaaaagtg cgcaacgatc cgggatatct cgaaagccat ggctatacgg tgatgcgtgg
     1561 ctggaacagc agagaagcga ttgacccatg gcaggttgac tggtctacaa tcacggcctc
     1621 gaatttaccg ttccgcttcc agcaggctcc aggcccacgg aactcgctgg ggcgctataa
     1681 attcaatatg ccgagttcag aggccattta tttgcatgac acgccgaacc acaatctgtt
     1741 caagcgtgat acacgcgcat tgagctcagg ctgtgtacga gtgaataaag cttccgatct
     1801 ggcgaatatg ctgttgcagg atgcaggctg gaatgacaaa cgtatttctg atgcgctgaa
     1861 gcagggtgat acacgttacg tcaatattcg gcagtcgatt ccggtgaatc tctactacct
     1921 gacggccttt gttggtgcag atggtcgtac ccagtatcgt acagatattt acaattatga
     1981 tctgcctgcg cgatccagct cgcaaatcgt atcgaaagcg gaacaattaa tcaggtaaat
     2041 gaagtagttc ggggaaatca gttgtcgtaa taattagcat gattgggggc gattctctgc
     2101 agcccccgtc actgctgggg ttgagtcatc ttgacgtctg ctttacgggc ggttaaggtg
     2161 cctcttgtgc gccagaagtg catataaacg ataacattga cctgtagact tgattatcat
     2221 ggacaaattc gacgctaatc gccgcaaatt gctggcgctt ggtggcgttg cactcggtgc
     2281 cgccatcctg ccaacccctg cgtttgcaac actctctacc ccacgcccgc gcattttgac
     2341 actcaataat cttcataccg gagagtcaat caaagcggag tttttcgatg gcagaggcta
     2401 tattcaggaa gaattggcaa aacttaacca ttttttccgc gattaccgcg cgaacaaaat
     2461 aaagtccatc gacccaggat tattcgacca gttgtatcgc ctgcaagggt tgttaggcac
     2521 gcgcaaaccg gtgcaactca tttccggtta tcgttccatt gataccaaca atgaactacg
     2581 cgcccgcagc cgtggagtag cgaagaaaag ctatcacact aaaggccagg cgatggattt
     2641 ccatattgaa ggtatcgcgt taagcaatat tcgcaaagcc gcgttatcta tgcgcgcagg
     2701 tggtgtagga tattacccac gtagtaactt tgtgcatatt gataccgggc cagcacggca
     2761 ctggtagcaa tcgcttaacg aaacaggggc agtatgaact atcgtattat tccggtcacc
     2821 gcattctccc agaactgttc attaatctgg tgtgaacaaa cccgtctggc cgcactggtc
     2881 gatcctggcg gcgatgcgga aaaaatcaaa caggaagttg atgacagcgg cctgacactg
     2941 atgcagatcc tgctgacgca tggtcatctg gaccacgttg gcgcagcggc ggaactggcg
     3001 caacattacg gcgtgccggt ttttggcccg gaaaaagaag atgagttctg gctgcaaggc
     3061 ttgcctgtgc aaagtcgtat gtttggtctg gaagagtgcc agccgctgac gccagatcgt
     3121 tggctgaacg aaggcgatac catcagcata ggaaatgtga ctttacaggt gttacattgc
     3181 cctgggcata cgccgggtca tgtcgtgttt tttgatgatc gggcaaagct gctgatttct
     3241 ggcgatgtta ttttcaaagg cggagtaggg cgcagtgact tcccgcgtgg cgatcataat
     3301 caactgattt cttcaatcaa agataaattg ctgccactgg gggatgacgt gacatttatt
     3361 ccgggtcacg gaccattatc cacacttggt tatgaacgcc tgcataatcc cttcctgcaa
     3421 gacgaaatgc ccgtctggta aggcacataa aaaagcccgc ttttaatgcg ggcctggatt
     3481 tctggcaaag tgcgctttgt ttatgccgga tgcggcacga gcgccttatc cggcctacaa
     3541 aatcgtgcaa attcaaaata ttgcagggga cgcgtaggcc tgataagcgt agcgcatcag
     3601 gcaatgttgc gtttgtcatc agtctcagcc cgcttttcag cgggcttcat tgtttttaat
     3661 gcttacagca ctgccacaat cgcttcgcac agcggagcca tgttatctgg tgtcatcccg
     3721 gccacattta cgcgaccaga agcaaccgca tatacgccaa actcttcgcg cagacgcagc
     3781 acttgttctt ttgtcaggcc actgaaggag aacatgccgt tctgtttgat gataaagctg
     3841 aagtcgcggt ttgcgccttt ttcctgcagc gtattgacga acaactgacg catacgctga
     3901 atacgctggc gcatatcagt cagctcttgt tcccaaatcg cacgtaacgc atcgttgctc
     3961 aggatggtgg caacaacaga agcgccgtgt gctggtgggt tagagtagtt agcgcgaatc
     4021 gccgctttca tttggctgaa tgcgcgatca acggtttcac tgtcggcagc aaccagagta
     4081 caagcgccaa cacgctcgtt gtacaggcca aagtttttag agtaggaact ggcaacaatc
     4141 agctctttat gcatagccgc gaaagcgcgc agtccttcag catcttcttc cagaccacgg
     4201 gcaaaaccct ggtaagcgaa gtcaaacagc ggtaaccagc ctttctcaac ggagagttgt
     4261 gccagtgtct gccattgttc cagtgtaggg tcgataccgg ttgggttatg gcagcagcca
     4321 tggaacagca ctacgtcgcc agcctgagct tcattcaggc tgttaatcag tgcatcgaag
     4381 tcaagagtgt gattttccgc atcataataa gcgtattcac gaacttccag acctgcagag
     4441 ttaaagacgc tcttatggtt cggccagctt gggttgctca cccacactcg cttaacgctg
     4501 gtattttttg ccaggaaatc ggcagctacg cgtagtgcgc cagtgccccc cggagtctgt
     4561 gccgtgcgag cacgtttgtc attgatcagg gcgctacctt taccaaacag cagttcctga
     4621 gtgcagcgac caaattcagg gatgccgtca atgccgaggt aatttttggt ggtttcattt
     4681 tcgagcagat actgttcagc ctttttcacg ctggtcagta ccggggtttt gcccgtctca
     4741 tctttataga caccaatccc gaggttaatt ttgccgggac gttcatcggc acgaaacaga
     4801 tcggccaggc ccagaatcgg gtcggcagga gcggcggtaa tgttctcaaa catgacgagg
     4861 ttccattatg gttacagaag ggaagtccgc tatcagggta acgggagatt tacaaaattc
     4921 caactattac tgatgaaaac gcaggctgtt tttgcaagac gtgagattgc tctggaaggt
     4981 ataaaaaaaa caggaccaaa gtcctgtttt ttcggcattt aacaaagagg tgtgctatta
     5041 gaactggtaa acgataccca cagcaacggt gtcgtctgaa cctacgccca gtttgttgtc
     5101 agaatcgatc tggttgatga tgtagtcaac ataggtggac atgtttttgt tgaagtagta
     5161 ggttgcgccc acttcaaagt agttcaccag atcaacatca ccgatacctt ctacgtcttt
     5221 cgctttagat ttggtgtaag cgatggacgg acgcagaccg aaatcgaact ggtattgtgc
     5281 aactaacaga acgtcttgcg ttttgttggc gaagccgctg gtgtttgtaa atttattagt
     5341 gatcggcgta gcgttacggg tttcaccgta gttcgctgcc aggtagatgt tgttcgcgtc
     5401 gtacttcaga ccagtagccc actgttcagc ttttttaccg ttgccaagag gttgagcttc
     5461 ttgcaggttg gtacggtcag ctgcaccata agcaccaacg ataccaaagc cttcgtattc
     5521 gtagctgata gaaccgccaa caccgtcgcc gttagaacgg cgtgcagtgt cacgctcgtt
     5581 tttacccagg tactgaacag cgaagttcag gccatcaacc agaccaaaga agttggagtt
     5641 acgataggta gcaacgccgc caacacgacc aacgaagaag tcatcgctgt atgcagtatc
     5701 accaccaaat tctggcagca tatcggtgta acccagtgca tcataaacca caccgtagtt
     5761 acggccgtaa tcgaaagaac caacgtcagc gtatttaaga cccgcgaatg ccagacgcgt
     5821 tttgttacca gtttgagcgt cagcgccttc agagttgtta ccttggaagt tatattccca
     5881 ctgaccataa ccggtcagat cggaattgat ttgagtttcc cctttaaaac caagacgggc
     5941 ataggtcatg tcgccattgc caccgtaact gttttcaccg ttacccttgg aaaaataatg
     6001 cagaccaaca gctttaccgt acagatctac tttgttgcca tctttgttat agatttctgc
     6061 agcgtttgca gtacctgcta ctaacagagc agggacgatc actgccagaa tattgcgctt
     6121 catcattatt tattaccctc atggtttttt ttatgacacc tgccactgcc gtcaataagt
     6181 tctgtcaata aaaatttacg gaactattga tgagagtttg gtgtctttat gtgtctgcag
     6241 gcatctttcc attcaaacta acgtttcgct accgtgaaag tgctgcaaag ataaagattt
     6301 agtttcaaaa agaaaaatat gtaatcaaaa gtaaaaatta aggaactttg tgaacaccgt
     6361 catatttcca tagaaacgtg atgatattta cagcaatttt tatctattta tatgatttac
     6421 ttatatttaa attaactaag cggaaatttt gtttctgatg gaaactttat cgacctggca
     6481 caaaatcctc tttcagacat ccagaatgcc aaaaaatagt atgaaaattg tgctatcagc
     6541 taagaaaaaa ctaatccgca ataagaatgc gggttatttt ttgtgcgtaa atgttgcaat
     6601 gtaatattcc gtaacaggat gatcgttatg gcggggttgc aaatagattg cttgacttaa
     6661 caaacagata acttgacaga aaggataaaa aagagccagc aggcgctggc tctttgagga
     6721 agaaaatcag aagctggcgt tgcgcggagt acgtgggaac ggaatcacat cacgcacgtt
     6781 ttgcacgcca gttacgtaag caatcaggcg ttcaaaacca agaccgaaac ctgaatgcgg
     6841 aacagtaccg tagcgacgca gatcgcgata ccaccagtaa tcttctttat tcaggcccat
     6901 ttccagcata cgctcgtcca gaacgtccag acgttcttca cgctgggagc caccaatgat
     6961 ctcaccgatg cccggagcca gaacgtccat agccgcaacg gttttaccgt cttcgttgag
     7021 gcgcatatag aacgctttaa tatctttcgg atagttttta accactaccg gtgctttaaa
     7081 gtgttcttcc gccagataac gctcatgctc agaagagaga tcgacgcccc agtaaaccgg
     7141 gttttcaaac ttcctgccgc agttttcgag aatggtcact gcgtcggtgt aatccacctg
     7201 cgcgaaatcg gcctcaatga agcgttccag acgtgaaacg gcatctttat ctacgcgttc
     7261 agcgaagaat ttcatgtcgt ctgcgcgttc ttcgagaacc gctttgaaga catatttcag
     7321 catggcttca gccagacccg cgatatcgtt caggttagca aacgccactt ccggctccag
     7381 catccagaat tccgccaggt gacggctggt gttggagttt tcagcacgga aagtcgggcc
     7441 gaaggtataa attttggata atgcgcaagc gtaggtttcg ccgttcaact ggccagatac
     7501 ggtcaggaaa gactctttac caaagaagtc tttgtcgaaa tccactttgc cctgatcgtt
     7561 acgcggcagg ttttccagat ccagcgtaga aacgcggaac atttcgcctg caccttcggt
     7621 atcagatgcg gtaatcagtg gcgttgaaac ccagaagaat ccctgctcgt taaagaagcg
     7681 atgcagcgcc tgcgccagcg tatggcgaac gcgcgcgacg gcaccaatca ggtttgtgcg
     7741 cggacgcagg tgagcgactt cacgcagata ctcaatgctg tggcgttttg ccgccatcgg
     7801 gtaagtgtct ggatcttcaa cccaaccagc aacttcaact ttgctggcct gaatttcaaa
     7861 ttgttgcccc tggcccggcg acgccacgac tttacccgtc acaatgaccg agcagccggt
     7921 ggtcagacgc aggacgtctt cattgtaatt gggcagagaa ttattgatga cagcctgtac
     7981 aggatcaaag caggaaccgt cataaacggc gaggaaggag atgccagctt ttgaatctcg
     8041 gcgggtacgt acccatccgc gtacggtgac ttcgctgtca acggctacgc ggccctggag
     8101 tacgtcggct acaggcacaa cgctcataat attctctctg ttaatagtcg gaaaaaataa
     8161 acacttgtcc acccgtaaat ggggggatac ctatgttacc tggcatctgc aatcagacaa
     8221 gcagaattcg caaatgcagc gcaagatttc ggaattaaag gtaaaaaaag ggagccgatt
     8281 agctccctga tgatattaac tggctttttt aatatgcgga aggtcgaacg ctttgcgcag
     8341 cgcccgaaca aacgctttat catggcagat agttttgcca gggctgtcag aaagtttcgc
     8401 caccggttta ccgttacact ctaccaactt aatcacaata ttcaggggtt ttacctgggg
     8461 gatatcgcag gtcaggcgag tcccaatacc aaaacttaat tgcacgcggg aagagaagtg
     8521 gcggtatagc tcaaccgctt tgcgtaaatc cagattgtca gagaaaacca gcgttttact
     8581 ctgtggatca attcccagct ttttataatg tgcaatggct ttttcacccc attcaaccgg
     8641 gtcgccagag tcatgacgca ggccctgata ccgactggcg aactcgacac cgaaatcacg
     8701 caggaaagca tccatagtga tgcagtcggt taatgcaatg ccaagttggt cgggatattc
     8761 ttccagccag gcagcaagtg cagctcgctg gctgttggct aggtccgggc tgatttgctg
     8821 atgtgcctgg aaccattcgt gcgcctgtgt tcccatcggc gtgagggaaa gccgacgcgc
     8881 cagatcgtag ttgctggtgc ccacgaacca ggattcctgt tgcagacgct taacgatggt
     8941 ttcttgtact tcgcgagaaa aacggcgacg ggtgccaaaa tccatcagat ggaagcgcga
     9001 catatcaaga ccggcggtta acgccgagaa gtcgactaat ttgctttcca gcgtgtcgag
     9061 ggcttgcgca acgtcggcct gcggtgagcg atagcgatgt accatttcac tgataaccgc
     9121 cagcaaagga acttcccaga ggatgacttc acgccacgga ccgcttaagc gaatatccag
     9181 cttgccatta tcgttggaca cggtgacttg ttccgggtta aagcggaatt cgcgtaacca
     9241 gttaagatag tcggccttaa agaaaggcag ggcagagagc cactgatatt catcatcctg
     9301 caggcgcagg tgctgcatcg cctgaatctg ttcacgaata gcatcggcat aaatacccag
     9361 cagatcgtca cctcggcaac gaaactccgc cgcgacatgc acatcgtaat agtgatgaaa
     9421 cacggcttgc tgcatatgca acttataagc atctgtatcc agcaacgagt gcagaacagg
     9481 agaagcgaat tgtgtcatag gtgcgcagta gcatcctcgt acaggagcgt ttagtacaat
     9541 aaacatcttc aggaactgct ggagtatacc ttgtttcgca atttattgaa ccccgatcac
     9601 accatatgcc acctttctgg tcgatggcat tacgcggtgt atgttataaa aatgtagcaa
     9661 taaaggcgtt tgtacctgaa aagatgaaga ttctgcatag cgcgatttac gcaacaggaa
     9721 tagactgaac accagactct ataaaagatg ctaaaggtta tttatgactc aacagccaca
     9781 agccaaatac cgtcacgatt atcgtgcgcc ggattaccag attactgata ttgacttgac
     9841 ctttgacctc gacgcgcaaa agacggtcgt taccgcggtc agccaggctg tccgtcatgg
     9901 tgcatcagat gctccgcttc gtctcaacgg cgaagacctc aaactggttt ctgttcatat
     9961 taatgatgag ccgtggaccg cctggaaaga agaagagggc gcactggtca tcagtaattt
    10021 gccggagcat tttacgctta agatcgttaa tgaaataagc ccggcggcga ataccgcgct
    10081 ggaagggctt tatcagtcag gcgatgcgct ttgcacccag tgtgaagccg aaggtttccg
    10141 ccatattacg tattatctcg accgcccgga cgtgctggcg cgttttacca ccaaaattat
    10201 tgccgataaa accaaatatc ccttcctgct ttccaacggt aaccgcgttg cgcaaggtga
    10261 actggaaaac ggacgccatt gggtacagtg gcaggacccg ttcccgaaac cgtgctacct
    10321 gtttgcgctg gtggcaggcg actttgatgt actgcgcgac acctttacca cgcgttctgg
    10381 tcgcgaagtg gcgctggagc tgtacgtcga tcgcggcaac cttgatcgcg cgccgtgggc
    10441 gatgacctcg ctgaaaaact caatgaaatg ggatgaagaa cgcttcggcc tggagtatga
    10501 cctcgacatc tatatgatcg tcgcggtgga tttcttcaat atgggcgcaa tggagaataa
    10561 gggtttgaat atctttaact ccaaatatgt gctggcccgc accgacaccg ccactgacaa
    10621 agattacctc gatattgaac gcgttatcgg ccatgaatat ttccataact ggaccggtaa
    10681 ccgagtcacc tgccgcgact ggttccagct cagcctgaaa gaaggtttaa ccgtcttccg
    10741 cgatcaggaa ttcagctctg accttggttc ccgtgcagtt aaccgcatca ataatgtgcg
    10801 caccatgcgc ggattgcagt ttgcggaaga cgccagcccg atggcgcacc cgatccgccc
    10861 ggacatggtc attgagatga acaacttcta taccctgacc gtttacgaga agggcgcgga
    10921 agtgatccgt atgatccaca ccctgctggg cgaagaaaac ttccagaaag ggatgcaact
    10981 ctatttcgag cgccatgatg gcagcgcggc aacctgcgac gactttgtgc aggcgatgga
    11041 agatgcgtcg aatgtcgatc tctcccattt ccgccgttgg tacagccagt ccggcacgcc
    11101 gattgtgacc gtcaaagacg actacaatcc ggaaaccgag cagtacaccc tgaccatcag
    11161 ccagcgcacg ccagccacgc cggatcaggc agaaaaacag ccgctgcata ttccgtttgc
    11221 catcgaattg tatgacaacg aaggcaaagt gatctcgttg cagaaaggcg gtcatccggt
    11281 gaattccgtg ctgaacgtca cccaggcgga acagaccttt gtttttgata atgtctactt
    11341 ccagccggtg cctgcgctgc tgtgcgaatt ctctgcgcca gtgaaactgg aatataagtg
    11401 gagcgatcag caactgacct tcctgatgcg tcatgcgcgt aatgatttct cccgctggga
    11461 tgcggcacaa agcctgctgg caacctacat caagctgaac gtcgcccgac atcagcaagg
    11521 gcagccgctg tctctgccgg tacatgtggc tgacgctttc cgcgcagtgc tgctcgatga
    11581 gaagattgat ccggcgctgg cggcagaaat cctgacgctg ccttctgtca atgaaatggc
    11641 tgaactgttc gatatcatcg acccgattgc tattgccgaa gtacgcgaag cactcactcg
    11701 tactctggcg actgaactgg cggatgagct gctggctatt tacaacgcga attaccagag
    11761 cgagtaccgt gttgagcatg aagatattgc gaaacgcact ctgcgtaatg cctgcctgcg
    11821 cttccttgct tttggtgaaa cgcatctggc tgacgtgctg gtgagcaagc agttccacga
    11881 agcgaacaat atgaccgatg cgctggcggc gctttctgcg gcggttgccg cacagctgcc
    11941 atgccgtgat gcgctgatgc aggaatacga cgataagtgg catcaggacg gtctggtgat
    12001 ggataaatgg tttatcctgc aagccaccag cccggcggcg aatgtgctgg agacggtgcg
    12061 cggtctgttg cagcatcgct catttaccat gagcaacccg aaccgtattc gttcgttgat
    12121 tggcgcgttt gcgggcagca atccggcagc gttccatgcc gaagatggga gcggttacca
    12181 gttcctggtg gaaatgctta ccgacctcaa cagccgtaac ccgcaggtgg cttcacgtct
    12241 gattgaaccg ctgattcgcc tgaaacgtta tgatgccaaa cgtcaggaga aaatgcgcgc
    12301 ggcgctggaa cagttgaaag ggctggaaaa tctctctggc gatctgtacg agaagatcac
    12361 caaagcactg gcttgataaa taaccgaatg gcggcaatag cgccgccatt cggggaattt
    12421 acccctgttt tctcaggcga atttcagatt caccacgctg catcaccctt tgcaacactt
    12481 ccgattccag ctccgctaat cgcaccgacc ctaatcgacg cggacggggg atatccactg
    12541 tcaaatccag accaattttt ccctcttcaa ttaataacac ccggtcagcc attgctaccg
    12601 cttcgctcac atcatgcgtc accaacagta cggtaaagcc gtgctcctgc caaagtgaca
    12661 caatcaaatc ctgcatctcg agtcgcgtta aggcgtccag tgccccgagc ggttcatcaa
    12721 gcaacaataa acccggtcga tgaatcaacg ctcttgccag cgccactcgc tgtttctgcc
    12781 cgcctgaaag tgcggcaggc cattccccgg cgcgattctc cagtcctacc gcagccaacg
    12841 cccgacgcgc ggcatcgcgc cactggcctt taaggcctaa cccaacgtta tcaatcaccg
    12901 atttccacgg tagcagacgc gcatcctgaa acatcattcg cgtgtcttcc tgaatttcag
    12961 ccagcggtgt ggtgcctgcc aacacatcgc ctgcggttgg cgtttccagc ccggccagca
    13021 ggcgcagcag ggtacttttg ccaccaccgc cacaaactga cctgccggaa tatgtaaatc
    13081 cagttggttc aggacgatat tttccgcgta atgtttgctt actgcattga gcaacaatgg
    13141 tgtgccctgg ttcagacgag cagtattcat accgtggcct ccttcaaatg ataagccggg
    13201 ttccagcgca accagaggcg ctctaacagc tgcgcgctga cgtcagcaag tttgccgagc
    13261 agggcgtaaa gaataatagc gactaccacc acgtccgttt gcaaaaactc tcgcgcattc
    13321 atcgccagat aaccaatgcc ggaattggca gaaatggttt cggcaacaat cagcgtcagc
    13381 cacatcaggc ccaacgcaaa acgcacgccg accataattg agggcagggc accaggcagg
    13441 atcacatgga taaacagcgg tatgccggat aacccatagc tacgcgtcat ctccaccagc
    13501 ccgcgatcga tattacggat gccatgccag gtgttgatat aaatgggaaa cagcgtaccg
    13561 agcgccacca gaaagatttt tgcggattca tcaatgccaa accacaaaat caccagcggg
    13621 atcagcgcca gatgcggcac gttgcgcaac atctgaattg aggtatccag cagccgttct
    13681 ccccagcgag atagcccgct aatcagtccc aaaatcaacc ccagcgatcc gccaattgaa
    13741 aagccaatca gcgcccgcta ggaactgatc gccagatgct gccacagttc gccgctggcg
    13801 gagagcgtcc agaacgccgt caccacccct tccggtgagg gcaaaatacg cgtcgacagc
    13861 cagccaactg aggaggccag ttgccacacc gccacgatgc ccaccggtaa aaaccagggg
    13921 gcaacgcgca ataaccactt cttcactggc gttgccatta tttcttcctt agctttgcgc
    13981 gactttacgg gggataaaat cattcgccac cgcttcgcct tgcggattca gcggctgcgg
    14041 ctggggaatt tccggaatgg cgacatccag atgtgggaac agcaactcgc cgacccgata
    14101 cgcttcttcc agatgcggat agcccgaaag cacaaagctg tcgatgccaa gcgcggcgta
    14161 ttcgttgatt cgcgcagcga ccgtaggacc atcgcccacc agcgccgttc cggcaccgcc
    14221 gcgcactaag ccaacgcccg cccataaatt ggggctgatc tccagattgt cgcgcttgcc
    14281 gttatgtaac gccgccattc gctgttgtcc tacggaatcc gtccgggcga atgcggcctg
    14341 tgctttggcg atagtttcat catcaagatg cgagattaac cgctcggcgg cctgccacgc
    14401 ttcgtcgtta gtttcacgaa caatcacatg cagacgaata ccgaaacgaa ttttgcgtcc
    14461 atgcgcggca gctttcgccc gcacttgttc gatcttctct tttactagtt ctggcggttc
    14521 gccccaggtg aggtagagat caacttgttc tgccgccagc tcctgggcga cgtctgacga
    14581 tccgccaaag taaagcggag gataaggctg ttgaatcggc gggaagagca gttttgctcc
    14641 gcgcacatga atatgtttac cgttgaaatt gacggtttcc cccagcaata agcgccgcca
    14701 gacctaggta aattccgccg aggcttcgta gcgctcgcta tgatcaagga acacgccgtc
    14761 gcctgccagc tcttgtggat cgctgcctgt gaccagatta aacaacgcac gaccatttga
    14821 gagacggtca agcgtggcgg cctggcgagc ggcaacggta ggtgaggtta cgctggggcg
    14881 cagggcgaca agaaacttca gccgctgcgt caccgggatc atcgacgccg ccaccagcca
    14941 cgcatcttca cacgatcgcc ccgttgggat cagcacaccg gtatagccca gacgatccgc
    15001 cgcttgcgca atttgttgca gataaccgtg atcaaccggg cgtgaacctt cttccgttcc
    15061 cagatagtgc ccgtcaccgt gggtcggtaa aaaccagaac atattcagac tcataattgt
    15121 tttccttcca gttgagtggg ctgccagatg cgctggcgaa tatcgacttt tttcggcacc
    15181 agacgatttt cataaaacag atctgccgtt tgctgctgta aggcggcaac ctcggcgtta
    15241 accggtttga tggtggtagg agggcgatga tctaagtaag aggcaatcac cggtgccggt
    15301 aagcccatcg tttttgccag taaagcgatg ctttgctcgc gctggctgcg ggttaacgca
    15361 tcggcctcac taaaggttgc cagtacgccc tgaataaaag cgccgttttt ttctgcatag
    15421 ggacgagctg ccagataaaa cgatccagtt tgattgagat cggtgccgtc tttcagcacc
    15481 cgcacgccgc cctgtaataa tgcagcagag tagtagggat cccagatagc ccaggcgtca
    15541 acgttacctt gctggaacgc ggcgcgggca tcagcgggcg ttaggtaagt gggttggata
    15601 tcggtaaact taagtccggc ctgacgcagt gcacgcagta aaaggttgtg tgaactggaa
    15661 cctttctgaa aggcaacttt gtgaccttta agatcggcta cggttttgat cgggctgttt
    15721 tctgccacca gaatcacttc ggctttgggc ttcggtggct cgacgctcac atataccaaa
    15781 tcagccccgg cagcctgggc aaagattggc ggaatatccc cggtactgcc gagatcaata
    15841 ctgccaacgt ttaaggcttc caacatttgc ggacccgcgg ggaactccac ccaggagatt
    15901 tttgattgcg gatagcgttt ttccagtaac tggtggcttt ttgccagtac cataccaata
    15961 ctgcctttct gatagcctat acataacgct tcaggcgagg attctgcagc aaccgcaatc
    16021 gtagagacgc taagcaatcc caccagcgcc agtttaatga tgttacgcat gggcattacc
    16081 tcgcagagac agaaggtcag gaacctgaac atcgcggcgg tgcaatgcct gccagaaagt
    16141 ttctagcgcg gtatcaagac gggtttgcag atttggcgtg aactggggtc tgtgatggta
    16201 atcaattact tgtgagtcat cggcaaacac gccgtgcagg atctcctgag ctttcagtgc
    16261 gcttaaaact ggtttaaggg cataatcgac cgccagcaga tgggccacgg taccgcccgt
    16321 cgccagcggt agcaccactt tgccttgcaa agcgcgctct ggcagcaggt cgagcagggt
    16381 tttcagcgcg ccggaatagg cggctttata cacaggtgta gcgactatca gtccatcagc
    16441 ctgttgcagc tgttcggtga aggtcttgag tgccggacta tcgaaacgag cataaagcag
    16501 atcttccggg gcgaagtttt gcagattcca gtgataaacc tctacatcca gtccatttag
    16561 tttttcccgc gcatattcca gcaaggagct ggagcgagaa ggaaagcgag gactacccgc
    16621 cagggtgatg acacgcatac tctctcctta taaccaattg ttcttttttt gttaacattg
    16681 ataacaattc ggtcagtctg tcggagagac aagaaaatgc caaatataaa ttttgtgtat
    16741 ctttttctga aaataaacta aagaaagggc tttatatatc acgcatattt atttgttgga
    16801 tagtcattag atgttgaatc aatgaattac tcgttcagtt aatatttaaa tattcatgaa
    16861 atctataaat taaagatttg tcacttattg gatttagtat gcttgattta aatggcggtc
    16921 aattattgtt attattaagt ctaatgtcat ttaaaggcat tatcatattt acgaagagat
    16981 caggatgatg acgatgaaaa aaagtgtatt gacggcgttt ataactgtgg tatgtgcaac
    17041 gtccagcgtt atggcagctg atgataatgc tatcacggat ggcaaagtaa catttaatgg
    17101 taaagttatt gctccagctt gtaccctggt agctgcgacg aaagattcag tagtcacatt
    17161 gccaaatgtc agcgccacca agttgcaaac taatggagca gtctctggcg ttaaaactga
    17221 tgtaccaatt gccttagaag gctgtgatgt tactgtaact aaaaatgcga cgtttacctt
    17281 tagtggtacg gctgacggcg tgcaacctac agcatttgcc aaccaggcta ccaccgatgc
    17341 agcgacgaat gttgctctac aaatgtatct gccagatggt tctacatcgg taactcccgg
    17401 taccgaaacg tcgaatattc agttagcgga ttctgctgag caaacagtga cctttaaagt
    17461 tgattatatc gctacgggga aagcgacttc tggtaatgtg aatgcggtaa caaatttcca
    17521 tattaactat tattaataga actcattaat tgttttatta attagtaccc ctctagtctt
    17581 ctggagggga tattcatatt ttttaagagt gactatttat gaaaacttgc ataacaaagg
    17641 gaattgtgac cgtaagttta acggcaatat tactcagctg ctcatccgca tgggcggcag
    17701 gtaaaggcgg gattggactt gcagcaacac gtcttgttta ttcagaaggt gaagagcaaa
    17761 tttcactggg tgtacgtaac accagtccgg atgttcctta tcttattcag tcatgggtga
    17821 tgaccccaga taataaaaaa tcagcagatt ttattattac accaccgcta tttgtgctga
    17881 atccggctaa tgagaatctg ttacgcatta tgtacattgg tgcgccgttg gcgaaagaca
    17941 gagaaaccct tttcttcact agcgtacggg cagtcccttc aacaacgaag cgggaagcgg
    18001 gaagagggaa ataccctgaa gattgccaca caaagcgtca tcaaactttt ctggcgacca
    18061 aaaggtttag cgtatccctt aggcgaggct ccggcgaaac tgcgttgcac ttcgtcagct
    18121 gacatggtta cggtcagtaa cccaacacct tatttcatta ccctgacaga cctgaaaata
    18181 ggtggaaaag tagttaaaaa taaaatgatt tccccctttg ataaatacca attttctctg
    18241 ccaaaggggg ccaaaaatag cagcgtaacg tgtcgaacca tcaatgacta cggggcggaa
    18301 acgccgcaac tcaactgtaa atcgtaagcc gtcttcagtt aagagagcga gatgtataga
    18361 actcatcgac aacacagcct gttaagctct ggtggagtgc catcgtttat tggggggctg
    18421 gtggtgtttg tgtcggcagc gttcaatgca caagctgaaa cctggttcga tcctgctttt
    18481 ttcaaagatg atccctcaat ggtggccgat ttgtctcgtt tcgaaaaagg acaaaaaata
    18541 acgccagggg tttatcgtgt cgatattgtt ctgaatcaga caattgtaga tacgcgcaac
    18601 gtcaattttg ttgagataac gccagagaag gggattgccg cctgtttgac gactgaaagc
    18661 ctggatgcaa tgggtgttaa tactgatgcg tttccggctt ttaaacaact ggacaaacaa
    18721 gcgtgtgtgc cattggcgga gattattccg gatgccagcg taacgtttaa tgtgaataaa
    18781 ctccgtctgg aaatttcagt accgcaaatc gccatcaaaa gtaatgcccg tggttatgtc
    18841 ccccctgaac gttgggatga agggatcaac gcgctattac tgggatattc gtttagcggg
    18901 gctaacagta ttcatagcag cgcagacagt gattctggcg acagctattt tctgaattta
    18961 aacagtggcg ttaatttagg cccatggaga ttgcgcaaca attcaacatg gagtcgcagt
    19021 agtggccaaa ccgcagaatg gaagaatctc agcagctatt tgcagcgggc ggttattcca
    19081 ctaaaaggcg aactgaccgt aggtgatgat tatactgcag gcgatttttt cgatagtgtc
    19141 agctttcgtg gtgtgcagct ggcgtcagat gacaacatgc tgccagacag cctgaaaggg
    19201 tttgcgcctg tggtgcgtgg tatcgccaaa agcaatgccc agataacgat taagcaaaat
    19261 ggttacacca tttaccaaac ttatgtatcg cctggtgctt ttgaaattag tgatctctat
    19321 tccacgtcgt cgagcggtga tttgttagtt gaaatcaaag aagcggacgg cagcgtcaat
    19381 agctacagcg taccgttttc cagcgtgcca ttactccagc gtcaggggcg aatcaaatac
    19441 gcggtgacac tggcgaaata cagaaccaat agtaatgaac agcaggagag caaatttgcc
    19501 caggccacgt tgcagtgggg cggaccgtgg ggaacgacat ggtatggtgg tggacaatat
    19561 gctgaatatt accgtgccgc catgtttggt ctgggattta accttggcga tttcggagca
    19621 atttcgttcg atgcgaccca ggcgaagagt acgctggcag accaaagcga acataaaggt
    19681 cagtcatatc gttttctgta tgccaaaacg ctcaaccaat tgggcactaa ttttcaactg
    19741 atgggctatc gctattcgac gtcgggtttc tacacccttt ccgacaccat gtataaacat
    19801 atggatggct acgaatttaa tgacggtgat gatgaagata cgccgatgtg gtcgcgttat
    19861 tacaatttgt tttacaccaa acgtggcaaa ctgcaggtca atatctccca gcaattaggc
    19921 gattacggtt cgttttattt aagtggtagc cagcaaactt actggcatac cgatcaacag
    19981 gatcggctat tacagtttgg ctacaacacg caaattaaag atctctcgct gggggtttcc
    20041 tggaactaca gtaagtcccg tggtcaacct gatgctgatc aggtgtttgc actaaatttt
    20101 tccctgccgc tcaatctgtt gctccccaga agtaatgata gctataccag gaaaaaaatt
    20161 acgcctggat gacctctaac accagtatcg ataacgaagg gcacattaca caaaacctgg
    20221 gtttaacgga gacactactc gatgacggta acctgagcta cagcgtgcaa cagggatata
    20281 acagcgaggg gaaaacggct aatggtagcg ccagcatgga ctacaaaggg gcgtttgcag
    20341 atgcccgagt gggctacaac tacagcgata acggcagtca acaacaactg aactacgctc
    20401 tttcaggcag tttagttgcc cattcacagg gcattaccct ggggcaatcg ctgggggaaa
    20461 ctaacgtgct gattgcagca ccaagcgcag agaatactcg tgtggcgaac agcaccgggc
    20521 tgaaaactga ctggcgcgga tataccgttg tcccctatgc cacttcttat cgggaaaatc
    20581 gaatcgcact tgatgcggca tcgttaaaac gtaacgtgga tcttgaaaat gcagtagtca
    20641 acgtggttcc caccaaaggg gcgttggttc tggcggagtt caatgcccat gcgggagcaa
    20701 gggtattaat gaaaacatca aagcagggta taccgctgcg ttttggcgcg atagcgacgc
    20761 tggacggcat acagactaat agcggcatta ttgatgatga tggctcgctc tatatgtccg
    20821 gtttgcccgc tcagggagcg ataactgtac gctggggcga agctcccgat caaatttgtc
    20881 atatcagtta ccagcttacc gaacaacaaa ttaactctgc gattacgcga atggatgcca
    20941 tatgcagata atctttggag aaaaatgcgt gttattacta cgactatttt ttgccgccgt
    21001 cttaatgcta tggtgcgctc aaactgctgc ttatagcggg cagtgtcata ccactcaggg
    21061 gaatccgtat attggcgtca attttggcgt taaaaccctg gaggaagaag aaaatacggc
    21121 tggagtagtt aaagacaaat tttatcagtg gaacgaatcg aatgattatt atgtttcctg
    21181 tgattgcgat aaagacaatg tcagaagtgg ccgatgggca ttcgccgcgg attcaccgtt
    21241 agtctattta ggcgacaact ggtacaaaat taatgactat cttgccgcca aagttttatt
    21301 gcaggttaaa ggcagttctc ctactgcggt tcctttcgaa aacgtgggca caggggcaga
    21361 tacacgatgg catatttgcg atcccggcgg tcaacgttta ggtggccagg gggctagcgg
    21421 taatagcggt agcttttccc tgaaaatatt gcagccgttc gttggttcgg tcgtcattcc
    21481 tcctatggcg ctggcgcgat tatttgaatg ctacaacata cccgcaggtg attcctgcac
    21541 gactacaggt acaccggttt tagtgtatta cctgtctggt actatcaatt cacttggctc
    21601 atgttccgtc aatgccggag aaacaatcga ggtcgatctg ggcgacgtat ttgcggctaa
    21661 ctttcgtgtt gtagggcata agcctcttgg ggccagaacg gcagaacttg caattccagt
    21721 caggtgtaac acgggaaacg cggggttagt taacgtcaac ctgagtctga cggcaactac
    21781 agaccccagc tatccccagg cgattaagac gtcacgtcct ggcgtgggcg tggtggtgac
    21841 cgatagccag aacaacatta tttcccctgc tggtggaaca ttaccgctct ctattcctga
    21901 tgatgcagac agtatcgcgc gaatgaatgt ctatccagtc agcacgacag gtgtaccacc
    21961 agaaaccggg cgatttgaag ccacggcaac ggtgagaata aattttgatt aacgcgtgaa
    22021 cgtatgaaga aaaaaacgat atttcagtgc gttatcttgt tctttagcat tcttaacatc
    22081 catgtcggga tggctgggcc tgaacaagtt agtatgcata tttatgggaa tgtggtcgat
    22141 cagggctgtg atgtcgccac caaaagtgca ttacaaaata ttcatattgg tgattttaat
    22201 atcagtgatt ttcaggctgc gaataccgta agcactgctg ctgatttgaa tatcgatatc
    22261 accggttgtg ccgctggtat tactggcgcg gacgtccttt ttagcggcga ggctgacacc
    22321 cttgcgccga cactgctcaa actaactgac acaggcggaa gcggtggtat ggcaacgggg
    22381 attgccgtgc aaattcttga tgcgcaaagt cagcaagaaa tcccgctcaa tcaggtccag
    22441 cctcttacgc ccttaaaagc cggggataac acactcaaat atcaacttcg ttataagtcc
    22501 acaaaggcgg gagcaacggg cggtaatgcg acggcggttc tctattttga tctggtttac
    22561 cagtgaagga gtgatgttga aacggataat ctggattctg ttcttactgg gattaacggg
    22621 gggctgtgag ctatttgccc atgatggcac ggtcaacatt agcggatcgt ttcgccgtaa
    22681 tacatgcgtg ctggcacagg atagcaagca aatcaatgtg cagttaggcg atgtctcgct
    22741 gacacgtttt tttcatggga attatggccc ggagaaatct ttcatcatta atttgcagga
    22801 ttgcggaaca gatgtcagca cggttgacgt caccttttca ggaacccccg acggagtgca
    22861 gagcgaaatg ctgtccattg aaagtggtac ggatgcagcc agtgggctgg caattgcgat
    22921 tctggatgat gcgaagatat tgattccgct taaccaggcg agtaaagact acagcctaca
    22981 tagcggtaag gtgccattaa ctttttatgc gcaattgcga cctgtcaata gcgatgtgca
    23041 gtcgggtaaa gtgaatgcca gcgcgacatt tgtacttcat tatgactaat acgtggaaca
    23101 gattggcgct cttgattttc gccgttttat cgctgctggt ggcgggtgaa ttgcgggcag
    23161 gagtggtggt cggcggaacg cgatttatct ttccggcaga cagagaatcg atatctattt
    23221 tactgactaa taccagtcag gaatcctggc tgattaacag taaaatcaac cgcccaacgc
    23281 gttgggccgg gggggacgcg tcgacagtgc cagcaccatt actggccgct ccgccactta
    23341 ttctcctgaa gcccggtact acaggcacgt tgcgcttgct gagaacggaa agcgacatct
    23401 tgcctgtgga tcgcgaaacg ctatttgagt taagcattgc cagcgtgcca tccggcaaag
    23461 ttgaaaatca gagcgtaaaa gtggcgatgc gctcggtatt taaactgttc tggcgacccg
    23521 aaggtttgcc gggcgacccg ctggaagctt atcaacaatt acgctggaca cggaattcgc
    23581 agggtgtaca actcactaac ccaacgcctt actacattaa cctgattcag gtgagcgtaa
    23641 atggtaaagc gttaagtaat gcgggagttg tgccgcctaa aagccagcgt cagacaagct
    23701 ggtgtcaggc aatcgcaccg tgtcatgtcg cctggcgggc gataaatgat tacgacgggt
    23761 tgagtgcaaa gaaggagcaa aatctgccct gaaacaggtt cggaaaacgt ttgcgttttt
    23821 tttgccgcag gtcaattccc ttttggtccg aactcgcaca taatacgccc ccggtttgca
    23881 caccgggaat ccaggagagt tcatgtacta ccccttcgtt cgtaaagccc ttttccagct
    23941 cgatccagag cgcgctcatg agtttacttt tcagcaatta cgccgtatta caggaacgcc
    24001 gtttgaagca ctggtgcggc agaaagtgcc tgcgaaacct gttaactgca tgggcctgac
    24061 gtttaaaaat ccgcttggtc tggcagccgg tcttgataaa gacggggagt gcattgacgc
    24121 gttaggcgcg atgggatttg gatcgatcga gatcggtacc gtcacgccac gtccacagcc
    24181 aggtaatgac aagccgcgtc tctttcgtct ggtagatgcc gaaggtttga tcaaccgtat
    24241 gggctttaat aatcttggcg ttgataacct cgtagagaac gtaaaaaagg cccattatga
    24301 cggcgtcctg ggtattaaca tcggcaaaaa taaagatacg ccagtggagc agggcaaaga
    24361 tgactatctg atttgtatgg aaaaaatcta tgcctatgcg ggatatatcg ccatcaatat
    24421 ttcatcgccg aataccccag gattacgcac gctgcaatat ggtgaagcgc tggatgatct
    24481 cttaaccgcg attaaaaata agcaaaatga tttgcaagcg atgcaccata aatatgtgcc
    24541 gatcgcagtg aagatcgcgc cggatctttc tgaagaagaa ttgatccagg ttgccgatag
    24601 tttagttcgc cataatattg atggcgttat tgcaaccaat accacactcg atcgttctct
    24661 tgttcaggga atgaaaaatt gcgatcaaac cggtggctta agtggtcgtc cgcttcagtt
    24721 aaaaagcacc gaaattattc gccgcttgtc actggaatta aacggtcgct taccgatcat
    24781 cggtgttggc ggcatcgact cggttatcgc tgcgcgtgaa aagattgctg cgggtgcctc
    24841 actggtgcaa atttattctg gttttatttt taaaggtccg ccgctgatta aagaaatcgt
    24901 tacccatatc taattatttc ttcgaattcc tctttataag ataatcaggg ctttattttc
    24961 agccctggtt gttttatatt catcgctgtt gcttatttag acattttgta cttttattgt
    25021 tgaggttatt aagcgaagcg acaatggatt gtgttgctgc ggttttatag ggtaggggag
    25081 aggcagatgc gaattaaacc agacgataac tggcgttggt attacgatga agagcacgat
    25141 cgaatgatgc tcgatttagc caatggtatg ctgtttcgct cacgttttgc gcgcaagatg
    25201 ttgactccag atgccttttc tcccgcaggc ttttgcgttg acgacgccgc gctctatttc
    25261 tcttttgaag aaaagtgccg cgattttaat ttatctaaag aacaaaaagc cgaactggtg
    25321 ctgaatgcac tggtagcaat tcgctatctc aaaccgcaaa tgccgaaaag ctggcatttt
    25381 gtttcccatg gtgaaatgtg ggtgcccatg ccgggcgatg cggcctgcgt ttggttgagc
    25441 gatactcacg agcaggtcaa tttgctggtc gttgaatctg gcgaaaatgc cgcactatgc
    25501 ctgctggcac aaccctgcgt tgttattgcg ggtcgcgcga tgcagttggg cgacgccatt
    25561 aaaatcatga acgacaggct gaaaccgcag gttaatgttg acagcttcag cctcgaacag
    25621 gcagtctaac gcgccaactt aagtgcagtc ttcggtacac agctacagca aagaatggtg
    25681 ccatcatcgc ccattgctga ttttttcagc ggcgagactt cgccttctaa aatctgaaca
    25741 cggcaacttc cacaaatgcc cgcgcggcaa gaataaggga tacgaattcc ctgattttct
    25801 aattgctcca gcaacacctg ttggttattt ccacgaaatg cctgtccctg ccagtcaata
    25861 tctacatttg cgtccggttg ttgcgtgatg ttggcggtat catcagcggc agctgcgccg
    25921 taaatttttg ccggagccgt tgccagaatt tccacctcat cgccaacgcg aatcacgccg
    25981 ctattacggg caattaaatt ctgaccaaaa tcgacatcgc cgttatcctg ggcagtgcgg
    26041 aaagattgca atgtttttaa tggttcgcct gccggatgtt tttgcccttt ttctgggctg
    26101 acggtggtga aaatacagcg gctacaaggt ttaaccacat caaacaccac atcaccaatg
    26161 cgaatcactt tccagcgatc ttcttcccag gctgacgtgc cggaaaccac cagattgggg
    26221 cggaattgct ccatttttac actggccgga caacgttgtt ggagatcacg taacgaggct
    26281 tcgttagcaa gaaggtaagg atagccatca gcaaatgaca gaggtacagt gttgtggcgt
    26341 ttcacgcgcc gggtcatttg tggccccacc cagcgtaatt gcacttcgcg ggagaaaaat
    26401 ccacttagcc atttgttgat cgcgtctggc gcaattcgcg cggtaaaatg tgtgccccaa
    26461 acttcggttg gtgcgtcttg tgtggcgaaa tcagcaaaac gaacatatgc gctactgcca
    26521 tctggtgcgg tgagatgcaa gccatcatgc acaggtgaag gagtaaaccg taccatctgg
    26581 ggaaactggc gagcggtaat aaacgtaccg tcaggttccg tgatcataaa gatgcgatcg
    26641 aaggccagac cactgacatc agccagagca tgtgtaagac caatgccgcg catcgattta
    26701 acaggatgaa taaaaagccg ggttaatgtc gccacggtgc ggtcctcaaa tgaaaataag
    26761 ccctcaactt tatgacatga cgtgcttatt agctataatg cgcaacaatt ttcttagcgc
    26821 ctgtcccatt aggctatttt atttgtcagt ttggccctgg gttgtgctcg aaatcctcac
    26881 gtacttgtgt acgctccggt ttctccgcgc tgtccatgtc cagactgact gcaacaatta
    26941 cgcctactgc ggtaggctct tagagtaaaa gtgacgatat gaattctctg tttgccagta
    27001 cggcccgtgg gctggaagag ctgttaaaaa ctgaactgga aaacctgggg gccgttgaat
    27061 gccaggtggt tcagggtggg gtccatttca agggcgacac acggcttgtt taccagagcc
    27121 tgatgtggag ccgcctggcc tcgcgtatta tgttgccgct gggcgagtgt aaggtttaca
    27181 gcgatttaga cctctatctc ggtgttcagg cgatcaactg gacagagatg tttaatcctg
    27241 gcgcgacctt cgctgtccac ttcagtggtt tgaatgacac catccgcaac agtcagtacg
    27301 gcgcgatgaa agtgaaagac gcgatcgtcg atgctttcac gcggaaaaat ctgccgcgtc
    27361 caaatgttga tcgcgatgcg ccggatatcc gcgttaacgt ctggctgcat aaagaaaccg
    27421 ccagtatcgc tcttgatctg agtggtgatg gtttacatct gcgtggctat cgcgatcgtg
    27481 ctggtattgc gccgatcaaa gaaaccctgg cagccgctat tgtgatgcga tccggctggc
    27541 agcctggaac accgctgctc gatccgatgt gtggttccgg tacgttgctg attgaagcgg
    27601 cgatgctggc gaccgatcgc gcacccggct tgcaccgtgg gcgttggggc tttagcggct
    27661 gggcgcagca tgatgaagct atctggcagg aagtgaaagc ggaagcgcaa actcgcgccc
    27721 gtaaaggcct ggctgagtat agctctcatt tttacggttc ggacagcgac gcacgggtga
    27781 ttcaacgtgc acgcactaac gcccgtcttg cggggattgc tgaactgatc acctttgagg
    27841 tgaaagatgt cgcgcaactg accaatccgc tgctgaaagg gccgtacggc acagtgttga
    27901 gcaacccgcc atacggggaa cgtctggaca gcgaaccggc gctgattgcg ctgcatagcc
    27961 tgctgggtcg gatcatgaaa aaccagtttg gtggctggaa tctctctttg tttagtgcct
    28021 cgccggatct gctaagctgc ttgcagctgc gtgcagacaa acagtacaag gcgaaaaacg
    28081 gcccgctgga ctgcgtacag aaaaattacc acgttgccga aagcactcct gacagcaaac
    28141 cggcgatggt agcggaagac tacgccaacc gcctgcgtaa gaacctcaaa aaattcgaga
    28201 agtgggctcg ccaggaagga attgaatgtt accgcctgta tgacgccgat ctgccggaat
    28261 ataacgttgc cgttgaccgt tattccgact gggtggtggt gcaggagtat gcaccgccaa
    28321 aaactattga tgctcacaaa gcgcgtcagc gtctgttcga tattatcgct gcaaccattt
    28381 cggtactggg gattgcgcca aacaaactgg tgctgaaaac ccgtgaacgc cagaagggca
    28441 aaaaccagta ccagaaactg ggcgagaagg gcgagtttct tgaagttacc gaatataacg
    28501 ctcacttgtg ggtgaacctg acggattatc tcgatactgg tctgttcctc gatcaccgta
    28561 tcgcccgccg tatgctcggt cagatgagca aaggcaaaga tttcctcaac ctgttctctt
    28621 ataccggtag cgccaccgtg catgcgggat taggcggcgc gcgcagcacc accaccgtgg
    28681 atatgtcgcg tacttatctg gagtgggcag aacgcaacct gcgtctgaat ggcctaaccg
    28741 ggcgtgcgca tcgcctgatt caggccgatt gcctggcgtg gctgcgtgag gcaaatgaac
    28801 agtttgatct gatctttatc gatccgccaa ccttctctaa ctcaaaacga atggaagatg
    28861 cgtttgatgt tcagcgcgat catctggcgc tgatgaaaga tttgaaacgt ctgctgcgtg
    28921 caggtgggac gatcatgttc tcgaacaaca aacgtggctt ccgtatggat ctcgacggcc
    28981 tggcaaaact gggactgaaa gcacaagaaa ttacgcaaaa aacgctctcc caggatttcg
    29041 cccgtaaccg ccagatccac aactgctggc tgattaccgc agcctgaaag gaatagtaat
    29101 gtcattaatc agtatgcatg gcgcatggct gtcgttcagc gacgcgccgc ttctcgataa
    29161 cgcagaactg catatcgaag ataacgaacg tgtttgtctg gtgggccgca acggcgcggg
    29221 caaatcgacg ttaatgaaaa tcctcaaccg tgaacaaggg ctggatgacg gtcgcattat
    29281 ttacgagcaa gatttgattg tagctcgtct gcaacaggat ccgccgcgta acgttgaggg
    29341 tagcgtttat gatttcgttg ccgaaggcat tgaagaacaa gcggaatatc tgaaacgcta
    29401 tcacgatatt tcgcgcctgg tgatgaacga cccgagcgag aaaaatctca acgaactggc
    29461 gaaggttcag gaacagttgg atcaccacaa cctgtggcag ctggaaaacc gcatcaacga
    29521 agtgctggcg caactggggt tagatcctaa tgttgcgctg tcgtcgcttt ccggcggctg
    29581 gttgcgtaaa gcggcattag gacgcgcgct ggtgagtaat ccgcgcgtgc tgttgcttga
    29641 tgaaccgaca aaccacctgg atattgaaac catcgactgg ctggaagggt tccttaaaac
    29701 cttcaatggg acgattattt tcatctccca cgaccgttcg tttatccgca atatggcgac
    29761 gcgcattgtt gatctcgatc gcggcaagct ggtgacctat ccagggaatt acgaccagta
    29821 cctgcttgaa aaagaagaag ccctgcgcgt ggaagaacta caaaatgccg agttcgatcg
    29881 caaactggcg caggaagagg tgtggatccg ccaggggatc aaagcacgcc gtacccgtaa
    29941 tgaaggccgc gtacgcgccc tgaaagcaat gcgtcgcgag cgtggtgaac gtcgcgaagt
    30001 gatgggtacc gcaaagatgc aggtggaaga ggccagccgc tccggtaaga tcgttttcga
    30061 aatggaagac gtttgctacc aggttgacgg taagcaactg gtgaaagatt tttcggccca
    30121 ggttctacgt ggcgacaaaa ttgtcctgat tggtccgaat gggtgcggca aaaccacgct
    30181 gctgaaactg atgctcggtc agcttcaagc ggacagcggg cgtattcacg ttggcaccaa
    30241 actggaagtg gcttatttcg atcagcaccg cgcggaactg gatcccgata aaacggtgat
    30301 ggataacatt gccgaaggta agcaagaggt gatggttaac ggcaagccac gccacgtatt
    30361 gggctatttg caggactttc tgttccatcc gaaacgggcg atgacgccgg tacgtgcgct
    30421 ttctggcggt gagcggaacc gcttgctgct ggcgcgtttg ttcctcaaac caagcaactt
    30481 attgattctt gacgaaccga ccaacgatct tgatgtcgaa acgctggaac tgctggaaga
    30541 actgatcgac agctatcagg gcacggtatt gctggttagc cacgatcgtc agtttgtcga
    30601 taacaccgtt acagaatgtt ggatcttcga aggcggcggt aaaattggtc gttatgtcgg
    30661 cggttatcat gatgcccgtg gtcagcaaga gcagtatgtg gcgctcaaac agcctgcggt
    30721 gaaaaaaacc gaagaagccg ccgcggcaaa agcagaaact gtaaaacgca gcagtagcaa
    30781 actaagctat aaattgcagc gcgaactgga gcagctaccg caattgctcg aagatctgga
    30841 ggcgaagctg gaagccctac agacgcaggt ggcggatgct tccttcttca gtcagccaca
    30901 tgagcagaca caaaaagtgc tcgccgatat ggctgctgca gagcaggagc tggagcaagc
    30961 ctttgaacgc tgggagtatc ttgaagcgtt aaaaaatggt ggctgatcgc aaaatagtcg
    31021 atttaaacag agacagctga caacggtaaa attgcctgat gaactgggtt tatcaggcat
    31081 gaaaaccaac tctttgttag tcatctgtaa aatagcgcat cattaaggag taccaatgtg
    31141 cgaacatcat catgccgcga agcacatcct gtgctcgcag tgtgacatgc tggtggcgtt
    31201 accgcgcctt gagcatggtc agaaagcggc atgtccccgg tgtggcacaa cgttaaccgt
    31261 ggcgtgggat gcccctcggc agcgtccgac cgcctatgcg ttggctgcac tgttcatgct
    31321 gttgctgtcc aacttgtttc cttttgtgaa tatgaacgtt gcaggagtta ccagtgaaat
    31381 tacattactg gaaattcccg gcgtgctttt ttctgaggac tacgccagcc tcggcacctt
    31441 tttcctgttg tttgtgcaac tggttccctc gttttgtctg ataaccattc tgttactggt
    31501 gaatcgcgcg gaattaccgg tccgtttaaa agagcaactg gcacgggtgc tttttcaact
    31561 caaaacctgg ggaatggcgg agattttcct cgcgggtgtg ctggtcagtt tcgttaaact
    31621 gatggcttac ggcagcattg gggtaggcag cagctttctc ccctggtgtt tattttgtgt
    31681 cctgcaactg cgcgcttttc agtgcgttga tcgtcgctgg ttatgggacg acatcgcccc
    31741 gatgccagaa ctgcgccagc cgctaaaacc aggcgtcacg gggatacgtc aggggctgcg
    31801 ttcgtgctcc tgttgtacgg caatccttcc tgctgatgaa cccgtgtgcc cgcgttgtag
    31861 taccaaaggg tacgttcggc gtagaaacag cctgcagtgg acactcgcgc tgcttgtaac
    31921 gtccatcatg ctgtatcttc cggctaatat tttgcccatc atggtgacgg atttattagg
    31981 ctcgaagatg ccgtcgacga ttctcgctgg ggtcattctg ttatggagcg aaggctctta
    32041 tcccgtcgct gcggtgatct ttctggccag tattatggtg ccaacgttaa agatgatcgc
    32101 catcgcgtgg ctgtgttggg atgccaaagg gcatggcaag cgcgacagtg aaagaatgca
    32161 tttgatttat gaagttgttg agtttgtagg ccgctggtcg atgattgacg ttttcgttat
    32221 cgcggtgctc tcggcgctgg tgcgtatggg aggtttaatg agtatttatc cggcaatggg
    32281 tgcattaatg tttgctttag tcgtcataat gacaatgttt tctgctatga cgtttgaccc
    32341 gcgtttgtcg tgggatcgtc aacctgaatc agagcatgag gagtcctgac agtatggaat
    32401 ctaataatgg ggaagccaaa atccagaaag tgaagaactg gtctcccgtg tggatatttc
    32461 ctatcgtcac ggcgctcatt ggggcctggg ttctatttta tcattacagc catcagggac
    32521 cggaagtgac cctgatcacc gcgaatgcgg aaggaattga aggtggcaaa accaccatta
    32581 aaagccgtag cgttgacgtc ggcgtggttg aaagcgccac actggctgat gatttgacgc
    32641 acgttgaaat caaagcgcgg ctgaattccg gtatggaaaa attgctgcat aaagacaccg
    32701 tcttttgggt ggtgaaaccg cagattggtc gcgaagggat tagcggcctg ggaacgctgc
    32761 tgtctggagt ttatatcgaa ctgcagccag gcgcgaaagg cagcaaaatg gataaatacg
    32821 atttgctgga ctcgccaccg ttggccccgc ctgatgcgaa aggtatccgt gtgattctcg
    32881 atagcaaaaa agccgggcag ctctcgccag gagatccggt gctgttccgt ggctatcggg
    32941 taggttcggt tgaaaccagc accttcgata cgcaaaaacg caatatcagt tatcaactgt
    33001 tcatcaatgc accttatgac cgactggtga ccagcaatgt tcgcttctgg aaagatagtg
    33061 gcattgcggt tgatctgacg tcagcgggga tgcgtgtgga gatgggctca ttgacaacgc
    33121 tgcttagtgg cggtgttagc tttgatgtgc cggaaggtct ggatttaggg cagccagtgg
    33181 caccgaaaac agctttcgtt ttgtatgatg atcagaagag cattcaggat tcgttgtaca
    33241 ccgatcacat tgattatctg atgttcttta aagattcggt acgcggtctg caaccgggag
    33301 ctccggtaga attccggggt attcgcctgg gtaccgtaag caaagtgcca ttctttgcgc
    33361 cgaatatgcg tcagacattt aacgatgatt accgtattcc ggtactgatt cgtatcgagc
    33421 cagagcggct gaaaatgcag cttggcgaaa atacggatgt tgttgagcac cttggcgaat
    33481 tgttgaaacg tggtttacgc ggatcgctga aaaccggaaa cctggtcact ggtgcactgt
    33541 atgttgatct cgatttctat ccaaatacgc ctgcaataac cggtattcgt gaatttaatg
    33601 gttatcagat tatccctact gttagcggcg gcctggcgca aatccagcaa cgactgatgg
    33661 aagcgttgga taagatcaac aaactgccat tgaatccgat gattgaacag gcaaccagta
    33721 cgttttctga aagtcagcgc acaatgaaaa acctgcaaac gacgctggat agcatgaaca
    33781 agatcctcgc tagccagtcg atgcagcagt tgccgacgga tatgcagtca acgttgcgtg
    33841 aattgaatcg cagcatgcag ggcttccagc ctggctccgc agcctacaac aagatggtgg
    33901 cggatatgca gcgccttgat caggtgttgc gagaactgca accggtgctg aaaacgctca
    33961 atgagaagag taacgcgctg gtatttgaag cgaaggacaa aaaagatcca gagccgaaga
    34021 gggcgaaaca atgaaaaagt ggctagtgac gattgcagca ctgtggctgg ccggatgcag
    34081 ctccggcgaa attaataaaa actattacca gttacctgtg gtgcagagcg gtacacaaag
    34141 taccgccagc cagggcaatc gtctgttatg ggtagagcag gtcactgttc ctgactatct
    34201 ggcggggaat ggtgtggttt atcaaaccag tgatgtgaag tatgtgattg ccaacaacaa
    34261 cttgtgggcc agcccgttgg atcaacagtt gcgcaacacc ctggttgcca acctgagtac
    34321 gcaactgccc ggctgggtgg ttgcctccca gcctctggga agcgtccagg acacgctcaa
    34381 tgttaccgta acggagttta acggtcgcta tgatggcaag gtcattgtca gtggtgagtg
    34441 gctgttgaac caccagggac aactgatcaa acgtccgttc cgtctggaag gagtgcaaac
    34501 tcaggatggt tacgatgaga tggttaaagt gctggccggt gtctggagtc aggaagccgc
    34561 ttctattgca caagagataa agcgtctacc ttaattataa agatttgtaa gtataaccgt
    34621 ctccggtatg ttgcctgagg cggttttttt gtttctaacg tgcggaaaaa tttgttcctc
    34681 ttcac
//
LOCUS       DADMHM010000022        34052 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.023, whole genome shotgun sequence.
ACCESSION   DADMHM010000022 DADMHM010000000
VERSION     DADMHM010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 34052)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34052)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34052
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.023"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            11..190
                     /locus_tag="JN125_000897"
     CDS             11..190
                     /locus_tag="JN125_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M28 family peptidase"
                     /protein_id="HAY8870756.1"
                     /translation="MNAPWFIPGIDFSDHLNYWQHDIPAVMITDTAFYRNKQYHLPGD
                     TADRLNYQKMAQMVL"
     gene            316..819
                     /locus_tag="JN125_000898"
     CDS             316..819
                     /locus_tag="JN125_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfbM family protein"
                     /protein_id="HAY8870757.1"
                     /translation="MGMIGYFAEIDSEKINQLLESTEKPLMDNIHDTLSGLRRLDIDK
                     RWDFLHFGLTGTPGFDPAKNDPLSRAVLGEHSLEDGIDGFLGLTWNQELAATIDRLES
                     LDRSKLRKQFSIKRLNEMEIYPGVTFSEELEGQLFASIMLDMEKLISAYRRMLRQGNH
                     ALTVIVR"
     gene            complement(886..2343)
                     /gene="nuoN"
                     /locus_tag="JN125_000899"
     CDS             complement(886..2343)
                     /gene="nuoN"
                     /locus_tag="JN125_000899"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416779.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoN"
                     /protein_id="HAY8870758.1"
                     /translation="MTITPQNLIALLPLLIVGLTVVVVMLSIAWRRNHFLNATLSVIG
                     LNAALVSLWFVGQAGAMDVTPLMRVDGFAMLYTGLVLLASLATCTFAYPWLEGYNDNK
                     DEFYLLVLIAALGGILLANANHLASLFLGIELISLPLFGLVGYAFRQKRSLEASIKYT
                     ILSAAASSFLLFGMALVYAQSGDLSFVALGKNLGDGMLNEPLLLAGFGMMIVGLGFKL
                     SLVPFHLWTPDVYQGAPAPVSTFLATASKIAIFGVVMRLFLYAPVGDSEAIRVVLAII
                     AFASIIFGNLMALSQTNIKRLLGYSSISHLGYLLVALIALQTGEMSMEAVGGYLAGYL
                     FSSLGAFGVVSLMSSPYRGPDADSLFSYRGLFWHRPILAAVMTVMMLSLAGIPMTLGF
                     IGKFYVLAVGVQAHLWWLVGAVVVGSAIGLYYYLRVAVSLYLHAPEQPGRDAPSNWQY
                     SAGGIVVLISALLVLVLGVWPQPLISIVRLAMPLM"
     gene            complement(2350..3879)
                     /gene="nuoM"
                     /locus_tag="JN125_000900"
     CDS             complement(2350..3879)
                     /gene="nuoM"
                     /locus_tag="JN125_000900"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HAY8870759.1"
                     /translation="MLLPWLILIPFIGGFLCWQTERFDVKVPRWIALITMGLTLALSL
                     QLWLQGGYSLTQSAGIPQWQSEFDMPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAV
                     LCSWKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHK
                     ASDGKTRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSG
                     VEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSL
                     PLFPNASAEFAPIAMWLGVIGIFYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGS
                     QLAYQGAVIQMIAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFA
                     VATLGMPGTGNFVGEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKS
                     QIASQELPGMSLRELFMILLLVVLLVLLGFYPQPILDTSHSAIGNIQQWFVNSVTTTR
                     P"
     gene            complement(4043..5884)
                     /gene="nuoL"
                     /locus_tag="JN125_000901"
     CDS             complement(4043..5884)
                     /gene="nuoL"
                     /locus_tag="JN125_000901"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HAY8870760.1"
                     /translation="MNMLALTIILPLIGFVLLAFSRGRWSENVSAIVGVGSVGLAALV
                     TAFIGVDFFANGEQAYSQPLWTWMSVGDFNIGFNLVLDGLSLTMLSVVTGVGFLIHMY
                     ASWYMRGEEGYSRFFAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYYTD
                     PKNGAAAMKAFVVTRVGDVFLAFALFILYNELGTLNFREMVELAPAHFADGNNMLMWA
                     TLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMT
                     PEILHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFH
                     LMTHAFFKALLFLASGSVILACHHEQNIFKMGGLRKSIPLVYFCFLVGGAALSALPLV
                     TAGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFHGKEQIHAHAVKG
                     VTHSLPLIVLLILSTFVGALIVPPLQSVLPQTTELAHGSMLTLEITSGVVAVVGILLA
                     AWLWQGKRTLVTSIANSAPGRLLGTWWYNAWGFDWLYDKVFVKPFLGIAWLLKRDPLN
                     SMMNIPAVLSRFAGKGLLLSENGYLRWYVASMSIGAVVVLALLMVLR"
     gene            complement(5881..6183)
                     /gene="nuoK"
                     /locus_tag="JN125_000902"
     CDS             complement(5881..6183)
                     /gene="nuoK"
                     /locus_tag="JN125_000902"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015833671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HAY8870761.1"
                     /translation="MIPLQHGLILSAILFVLGLTGLVIRRNLLFMLIGLEIMINASAL
                     AFVVAGSYWGQTDGQVMYILAISLAAAEASIGLALLLQLHRRRQNLNIDSVSEMRG"
     gene            complement(6180..6734)
                     /gene="nuoJ"
                     /locus_tag="JN125_000903"
     CDS             complement(6180..6734)
                     /gene="nuoJ"
                     /locus_tag="JN125_000903"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001774950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HAY8870762.1"
                     /translation="MEFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFF
                     SLGAYFAGALEIIVYAGAIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAI
                     MLVVIVYAILGVNDQGIDGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGR
                     EERAGEVLSNRKDDSAKRKTEEHA"
     gene            complement(6746..7288)
                     /gene="nuoI"
                     /locus_tag="JN125_000904"
     CDS             complement(6746..7288)
                     /gene="nuoI"
                     /locus_tag="JN125_000904"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015959823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HAY8870763.1"
                     /translation="MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRY
                     RGRIVLTRDPDGEERCVACNLCAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFC
                     GLCEEACPTTAIQLTPDFEMGEYKRQDLVYEKEDLLISGPGKYPEYNFYRMAGMAIDG
                     KDKGEAENEAKPIDVKSLLP"
     gene            complement(7303..8280)
                     /gene="nuoH"
                     /locus_tag="JN125_000905"
     CDS             complement(7303..8280)
                     /gene="nuoH"
                     /locus_tag="JN125_000905"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015875065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HAY8870764.1"
                     /translation="MSWISPELIEILLTILKAVVILLVVVTCGAFMSFGERRLLGLFQ
                     NRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVP
                     VSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFL
                     GLSLMGVVAQAGSFNMTDIVNSQAHVWNVIPQFFGFITFAIAGVAVCHRHPFDQPEAE
                     QELADGYHIEYSGMKFGLFFVGEYIGIVTISALMVTLFFGGWQGPLLPPFIWFALKTA
                     FFMMMFILIRASLPRPRYDQVMSFGWKICLPLTLINLLVTAAVILWQAQ"
     gene            complement(8277..11003)
                     /gene="nuoG"
                     /locus_tag="JN125_000906"
     CDS             complement(8277..11003)
                     /gene="nuoG"
                     /locus_tag="JN125_000906"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311194.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoG"
                     /protein_id="HAY8870765.1"
                     /translation="MATIHVDGKEYEVNGADNLLEACLSLGLDIPYFCWHPALGSVGA
                     CRQCAVKQYQNAEDTRGRLVMSCMTPASDGTFISIDDEEAKQFRESVVEWLMTNHPHD
                     CPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRY
                     YKDYADGTDLGVYGAHDNVYFGRPEDGTLESEFSGNLVEICPTGVFTDKTHSERYNRK
                     WDMQFAPSICQQCSIGCNISPGERYGELRRIENRYNGTVNHYFLCDRGRFGYGYVNLK
                     DRPRQPVQRRGDDFITLNAEQAMQGAADILRQSKKVIGIGSPRASVESNFALRELVGE
                     ENFYTGIAHGEQERLQLALKVLREGGIYTPALREIESYDAVLVLGEDVTQTGARVALA
                     VRQAVKGKAREMAAAQKVADWQIAAILNIGQRAKHPLFVTNVDDTRLDDIAAWTYRAP
                     VEDQARLGFAIAHALDNSAPAVDGIEPELQSKIDVIVQALAGAKKPLIISGTNAGSLE
                     VIQAAANVAKALKGRGADVGITMIARSVNSMGLGIMGGGSLEEALTELETGRADAVVV
                     LENDLHRHASATRVNAALAKAPLVMVVDHQRTAIMENAHLVLSAASFAESDGTVINNE
                     GRAQRFFQVYDPAYYDSKTVMLESWRWLHSLHSTLLSREVDWTQLDHVIDAVVAKIPE
                     LAGIKDAAPDATFRIRGQKLAREPHRYSGRTAMRANISVHEPRQPQDIDTMFTFSMEG
                     NNQPTAHRSQVPFAWAPGWNSPQAWNKFQDEVGGKLRFGDPGVRLFETSENGLDYFTS
                     VPVRFQPQDGKWRIAPYYHLFGSDELSQRAPVFQSRMPQPYIKLNPADAAKLGVNAGT
                     RVSFSYDGNTVTLPVEIAEGLTAGQVGLPMGMSGIAPVLAGAHLEDLKEAQQ"
     gene            complement(11056..12393)
                     /gene="nuoF"
                     /locus_tag="JN125_000907"
     CDS             complement(11056..12393)
                     /gene="nuoF"
                     /locus_tag="JN125_000907"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoF"
                     /protein_id="HAY8870766.1"
                     /translation="MKNIIRTPETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTG
                     LSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDR
                     LLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNI
                     MGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNN
                     VETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILED
                     YAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKAGSRLGTALAMAVDHEIN
                     MVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLG
                     PGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQPFSNTHLINGIQPNLLKERW"
     gene            complement(12390..12890)
                     /gene="nuoE"
                     /locus_tag="JN125_000908"
     CDS             complement(12390..12890)
                     /gene="nuoE"
                     /locus_tag="JN125_000908"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012124159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoE"
                     /protein_id="HAY8870767.1"
                     /translation="MHENQQPQTEAFELSAAEREAIEHEMHHYEDPRAASIEALKIVQ
                     KQRGWVPDGAIHAIADVLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHINGY
                     QGIQAALEKKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPE
                     LLERYK"
     gene            complement(12893..14695)
                     /gene="nuoC"
                     /locus_tag="JN125_000909"
     CDS             complement(12893..14695)
                     /gene="nuoC"
                     /locus_tag="JN125_000909"
                     /EC_number="1.6.5.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C/D"
                     /protein_id="HAY8870768.1"
                     /translation="MVNNMTDLTAQEPAWQTRDHLDDPVIGELRNRFGPDAFTVQATR
                     TGVPVVWIKREQLLEVGDFLKKLPKPYVMLFDLHGMDERLRTHREGLPAADFSVFYHL
                     ISIDRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMM
                     PQTWKGHPLRKDYPARATEFSPFELTKAKQDLEMEALTFKPEEWGMKRGTENEDFMFL
                     NLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIE
                     YLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMT
                     PVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLA
                     SYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENF
                     DFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERT
                     LQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTISYRTRIRTPSY
                     AHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR"
     gene            complement(14789..15451)
                     /locus_tag="JN125_000910"
     CDS             complement(14789..15451)
                     /locus_tag="JN125_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017490251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B"
                     /protein_id="HAY8870769.1"
                     /translation="MDYTLTRIDPNGENDRYPLQKQEIVTDPLEQEVNKNVFMGKLND
                     MVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTC
                     FTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDIYSVVQGVDKFIPVDVYIPGCPP
                     RPEAYMQALMLLQESIGKERRPLSWVVGDQGVYRANMQSERERKRGERIAVTNLRTPD
                     EI"
     gene            complement(15467..15910)
                     /gene="nuoA"
                     /locus_tag="JN125_000911"
     CDS             complement(15467..15910)
                     /gene="nuoA"
                     /locus_tag="JN125_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoA"
                     /protein_id="HAY8870770.1"
                     /translation="MSMSTSTEVIAHHWAFAIFLIVAIGLCCLMLVGGWFLGGRARAR
                     SKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSIRESGWVGFVE
                     AAIFIFVLLAGLVYLVRIGALDWTPARSRRERMNPETNSIANRQR"
     gene            complement(16541..17479)
                     /gene="lrhA"
                     /locus_tag="JN125_000912"
     CDS             complement(16541..17479)
                     /gene="lrhA"
                     /locus_tag="JN125_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator LrhA"
                     /protein_id="HAY8870771.1"
                     /translation="MISANRPIINLDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQ
                     QMQRLEQLVGKELFARHGRNKLLTEHGIQLLGYARKILRFNDEACSSLMFSNLQGVLT
                     IGASDESADTILPFLLNRVSSVYPKLALDVRVKRNAYMAEMLESQEVDLMVTTHRPSA
                     FKALNLRTSPTHWYCAAEYVLQKGEPIPLVLLDDPSPFRDMVLATLNKADIPWRLAYV
                     ASTLPAVRAAVKAGLGVTARPVEMMSPDLRVLSGVDGLPPLPDTEYLLCYDPSSNNEL
                     AQVIYQAMESYHNPWQYSPMSAPEGDDSLLIERDIE"
     gene            18399..19616
                     /locus_tag="JN125_000913"
     CDS             18399..19616
                     /locus_tag="JN125_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HAY8870772.1"
                     /translation="MSPIEKSSKLENVCYDIRGPVLKEAKRLEEEGNKVLKLNIGNPA
                     PFGFDAPDEILVDVIRNLPTAQGYCDSKGLYSARKAIMQHYQARGMRDVTVEDIYIGN
                     GVSELIVQAMQALLNSGDEMLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDD
                     IRAKITPRTRGIVIINPNNPTGAVYSKELLMEIVEIARQHNLIIFADEIYDKILYDDA
                     EHHSIAPLAPDLLTITFNGLSKTYRVAGFRQGWMVLNGPKKHAKGYIEGLEMLASMRL
                     CANVPAQHAIQTALGGYQSISEFITPGGRLYEQRNRAWELINDIPGVSCVKPRGALYM
                     FPKIDAKRFNIHDDQKMVLDFLLQEKVLLVQGTAFNWPWPDHFRIVTLPRVDDIELSL
                     SKFARFLSGYHQL"
     gene            19700..20299
                     /gene="yfbR"
                     /locus_tag="JN125_000914"
     CDS             19700..20299
                     /gene="yfbR"
                     /locus_tag="JN125_000914"
                     /EC_number="3.1.3.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-deoxynucleotidase"
                     /protein_id="HAY8870773.1"
                     /translation="MKQSHFFAHLSRLKLINRWPLMRNVLTENVSEHSLQVAMVAHAL
                     AAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQ
                     KLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYLKCLEELAAGNNEFLLAK
                     TRLEATLEARRSQEMDYFMEVFVPSFHLSLDEISQDSPL"
     gene            complement(20358..22190)
                     /locus_tag="JN125_000915"
     CDS             complement(20358..22190)
                     /locus_tag="JN125_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HAY8870774.1"
                     /translation="MNGELIWVLSLLAVAIVLFATGRVRMDAVALFVIVAFALSGTLT
                     VPEVFSGFSDPNVVLIAALFIIGDGLVRTGVATVMGTWLVKVAGNSEIKMLVLLMLTV
                     AGLGAFMSSTGVVAIFIPVVLSVAMRMQTSPSRLMMPLSFAGLISGMMTLVATPPNLV
                     VNSELLREGYHGFSFFSVTPVGLVVLVLGILYMLVMRFMLKGDTQTPQREGWTRRTFR
                     DLIREYRLTGRARRLAIRPGSAMIGQRLDDLKLRERYGANVIGVERWRRFRRVIVNVN
                     GVSEFRARDVLLIDMSAADVDLRQFCSEQLLEPMVLRGEYFSDQALDVGMAEISLIPE
                     SELIGKSVREIGFRTRYGLNVVGLKRNGVALEGSLADEPLLLGDIILVVGNWKLIGML
                     AKQGRDFVALNLPEEVSEASPAHSQAPHAIFCLVLMVALMLTDEIPNPVAAIIACLLM
                     GKFRCIDAESAYKSIHWPSIILIVGMMPFAVALQKTGGVALAVKGLMDIGGGYGPHMM
                     LGCLFVLSAVIGLFISNTATAVLMAPIALAAAKTMGVSPYPFAMVVAMAASAAFMTPV
                     SSPVNTLVLGPGNYSFSDFVKLGVPFTIIVMAVCVVMIPMLFPF"
     gene            complement(22277..22927)
                     /gene="hxpA"
                     /locus_tag="JN125_000916"
     CDS             complement(22277..22927)
                     /gene="hxpA"
                     /locus_tag="JN125_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexitol phosphatase HpxA"
                     /protein_id="HAY8870775.1"
                     /translation="MRCKGFLFDLDGTLVDSLPAVERAWSNWARRHGLAPEEVLAFIH
                     GKQAITSLRHFMAGKSEADIAAEFTRLEHIEATENEGITALPGAIALLNHLNKAGIPW
                     AIVTSGSMPVARARHKIAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVV
                     AEDAPAGVLSGLAAGCHVIAVNAPADTPRLNEVDLVLHSLEQITVTKQLNGDVIIQ"
     gene            complement(22938..23432)
                     /locus_tag="JN125_000917"
     CDS             complement(22938..23432)
                     /locus_tag="JN125_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007371080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfbU family protein"
                     /protein_id="HAY8870776.1"
                     /translation="MEMTNAQRLILSNQYKMMTMLDPANAERYRRLQTIIERGYGLQM
                     RELDREFGELKEETCRTIIDIMEMYHALHVSWSNLQDQQSIDERRVTFLGFDAATEAR
                     YLGYVRFMVNVEGRYTHFDAGTHGFNAQTPMWEKYQRMLNVWHACPRQYHLSANEINQ
                     IINA"
     gene            complement(23515..23970)
                     /locus_tag="JN125_000918"
     CDS             complement(23515..23970)
                     /locus_tag="JN125_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF412 domain-containing protein"
                     /protein_id="HAY8870777.1"
                     /translation="MSTPDNRSVNFFSLFRRGQHYSKTWPLEKRLAPVFVENRVIKMT
                     RYAIRFMPPIAVFTLCWQIALGGQLGPAVATALFALSLPMQGLWWLGKRSVTPLPPAI
                     LNWFYEVRGKLQESGQVLAPVEGKPDYQALADTLKRAFKQLDKTFLDDL"
     gene            24308..25510
                     /gene="ackA"
                     /locus_tag="JN125_000919"
     CDS             24308..25510
                     /gene="ackA"
                     /locus_tag="JN125_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HAY8870778.1"
                     /translation="MSSKLVLVLNCGSSSLKFAIIDAVNGEEYLSGLAECFHLPEARI
                     KWKMDGNKQEAALGAGAAHSEALNFIVNTILAQKPELSAQLTAIGHRIVHGGEKYTSS
                     VVIDESVIQGIKDAASFAPLHNPAHLIGIEEALKSFPQLKDKNVAVFDTAFHQTMPEE
                     SYLYALPYNLYKEHGIRRYGAHGTSHFYVTQEAAKMLNKPVEELNIITCHLGNGGSVS
                     AIRNGKCVDTSMGLTPLEGLVMGTRSGDIDPAIIFHLHDTLGMSVDAINKLLTKESGL
                     LGLTEVTSDCRYVEDNYATKEDAKRAMDVYCHRLAKYIGAYTALMDGRLDAVVFTGGI
                     GENAAMVRELSLGKLGVLGFEVDHERNLAARFGKSGFINKEGTRPAVVIPTNEELVIA
                     QDASRLTA"
     gene            25585..27729
                     /gene="pta"
                     /locus_tag="JN125_000920"
     CDS             25585..27729
                     /gene="pta"
                     /locus_tag="JN125_000920"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HAY8870779.1"
                     /translation="MSRIIMLIPTGTSVGLTSVSLGVIRAMERKGVRLSVFKPIAQPR
                     TGGDAPDQTTTIVRANSSTTTAAEPLKMSYVEGLLSSNQKDVLMEEIVANYHANTKDA
                     EVVLVEGLVPTRKHQFAQSLNYEIAKTLNAEIVFVMSQGTDTPEQLKERIELTRNSFG
                     GAKNTNITGVIVNKLNAPVDEQGRTRPDLSEIFDDSSKAKVNNVDPAKLQESSPLPVL
                     GAVPWSFDLIATRAIDMARHLNATIINEGDINTRRVKSVTFCARSIPHMLEHFRAGSL
                     LVTSADRPDVLVAACLAAMNGVEIGALLLTGGYEMDARISKLCERAFATGLPVFMVNT
                     NTWQTSLSLQSFNLEVPVDDHERIEKVQEYVANYINADWIESLTATSERSRRLSPPAF
                     RYQLTELARKAGKRIVLPEGDEPRTVKAAAICAERGIATCVLLGNPAEINRVAASQGV
                     ELGAGIEIVDPEVVRESYVGRLVELRKNKGMTETVAREQLEDNVVLGTLMLEQDEVDG
                     LVSGAVHTTANTIRPPLQLIKTAPGSSLVSSVFFMLLPEQVYVYGDCAINPDPTAEQL
                     AEIAIQSADSAAAFGIEPRVAMLSYSTGTSGAGSDVEKVREATRLAQEKRPDLMIDGP
                     LQYDAAVMADVAKSKAPNSPVAGRATVFIFPDLNTGNTTYKAVQRSADLISIGPMLQG
                     MRKPVNDLSRGALVDDIVYTIALTAIQSAQQQ"
     gene            27919..29439
                     /gene="yfcC"
                     /locus_tag="JN125_000921"
     CDS             27919..29439
                     /gene="yfcC"
                     /locus_tag="JN125_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416801.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative basic amino acid antiporter YfcC"
                     /protein_id="HAY8870780.1"
                     /translation="MSAITESKPTRRWAMPDTLVIIFFVAILTSLATWVVPVGMFDSQ
                     EVQYQVDGQTKTRKVVDPHSFRILTNEAGEPEYHRIQLFTTGDERPGLMNFPFEGLTS
                     GSKYGTAVGIIMFMQVIGGAFGIVMRTGTIDNGILALIRHTRGNEILFIPALFILFSL
                     GGAVFGMGEEAVAFAIIIAPLMVRLGYDSITTVLVTYIATQIGFASSWMNPFCVVVAQ
                     GIAGVPVLSGSGLRIVVWVIATMIGLIFTMVYASRVKKNPLLSRVHESDRFFREKQAD
                     VEQRPFTFGDWLVLIVLTAVMVWVIWGVIVNAWFIPEIASQFFTMGLVIGIIGVVFRL
                     NGMTVNTMASSFTEGARMMIAPALLVGFAKGILLLVGNGEAGDASVLNTILNSIANAI
                     SGLDNAVAAWFMLLFQAVFNFFVTSGSGQAALTMPLLAPLGDLVGVNRQVTVLAFQFG
                     DGFSHIIYPTSASLMATLGVCRVDFRNWLKVGAPLLGLLFIMSSVVVIGAQLMGYH"
     gene            complement(29472..30014)
                     /gene="yfcD"
                     /locus_tag="JN125_000922"
     CDS             complement(29472..30014)
                     /gene="yfcD"
                     /locus_tag="JN125_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase YfcD"
                     /protein_id="HAY8870781.1"
                     /translation="MEQRRLASTEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVV
                     HDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAE
                     HGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLKA
                     LALWMKRNAKNEAVETETAE"
     gene            complement(30072..30623)
                     /gene="yfcE"
                     /locus_tag="JN125_000923"
     CDS             complement(30072..30623)
                     /gene="yfcE"
                     /locus_tag="JN125_000923"
                     /EC_number="3.1.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311211.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiesterase"
                     /protein_id="HAY8870782.1"
                     /translation="MKLMFASDIHGSLPATERVLELFAQSGAQWLVILGDVLNHGPRN
                     ALPEGYAPAKVAERLNEVAHKVIAVRGNCDSEVDQMLLHFPITAPWQQVLLEKQRLFL
                     THGHLFGPENLPALNQNDVLVYGHTHLPVAEQRGEIFHFNPGSVSIPKGGNPASYGML
                     DNDVLSVIALNDQSIIAQVAINP"
     gene            complement(30679..31323)
                     /gene="yfcF"
                     /locus_tag="JN125_000924"
     CDS             complement(30679..31323)
                     /gene="yfcF"
                     /locus_tag="JN125_000924"
                     /EC_number="2.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione transferase"
                     /protein_id="HAY8870783.1"
                     /translation="MSKPAITLWSDAHFFSPYVLSAWVALQEKGLSFHIKTIDLDSGE
                     HLQPTWQGYGQTRRVPLLQIDDFELSESSAIAEYLEDRFAPPTWERIYPLDLENRARA
                     RQIQAWLRSDLMPIREERPTDVVFAGAKKAPLTAEGKASAEKLFAMAEHLLALGQPNL
                     FGEWCIADTDLALMINRLVLHGDEVPERLVDYATFQWQRASVQRFIALSAKQSG"
     gene            31459..32106
                     /gene="yfcG"
                     /locus_tag="JN125_000925"
                     /pseudo
     CDS             31459..32106
                     /gene="yfcG"
                     /locus_tag="JN125_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416805.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GSH-dependent disulfide bond oxidoreductase"
     gene            32163..32525
                     /gene="folX"
                     /locus_tag="JN125_000926"
     CDS             32163..32525
                     /gene="folX"
                     /locus_tag="JN125_000926"
                     /EC_number="5.1.99.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate 2'-epimerase"
                     /protein_id="HAY8870784.1"
                     /translation="MAQPAAIIRIKNLRLRTFIGIKEEEINNRQDIVINVTIHYPADK
                     ARTSEDINDALNYRTVTKNIIQHVENNRFSLLEKLTQDVLDIAREHHWVTYAEVEIDK
                     LHALRYADSVSMTLSWQR"
     gene            32546..33439
                     /locus_tag="JN125_000927"
     CDS             32546..33439
                     /locus_tag="JN125_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family protein"
                     /protein_id="HAY8870785.1"
                     /translation="MNIVITGGTGLIGRHLIPRLLELGHQITVVTRNPQKASSVLGPR
                     VTLWQGLADQSNLNGVDAVINLAGEPIADKRWTHEQKERLCQSRWNITQKLVDLINAS
                     DTPPSVLISGSATGYYGDLGEVVVTEEEPPHNEFTHKLCARWEEIACRAQSDKTRVCL
                     LRTGVLLAPDGGILGKMLPPFRLGLGGPIDSGRQYLAWIHIDDMVNGILWLLDNELRG
                     PFNMVSPSPVRNEQFAHALGHALHRPAILRVPATAIRLLMGESSVLVLGGQRAMPKRL
                     EEAGFAFRWYDLEEALADVVR"
     gene            complement(33487..>34052)
                     /locus_tag="JN125_000928"
     CDS             complement(33487..>34052)
                     /locus_tag="JN125_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Rpn family recombination-promoting
                     nuclease/putative transposase"
                     /protein_id="HAY8870786.1"
                     /translation="GYKELPLVIPMLFYHGCRSPYPYSLCWLDEFAEPAIARKIYSSA
                     FPLVDITVVPDDEIMQHRKMALLELIQKHIRQRDLLGLVDQIVSLLVTGNTNDRQLKA
                     LFNYVLQTGDAQRFRAFIGEIAERAPQEKEKLMTIADRLREEGAMQGKHEEALRIAQE
                     MLDRGLDRELVMMVTRLSPDDLIAQSH"
BASE COUNT         8512 a         9289 c         8555 g         7696 t
ORIGIN      
        1 tgtttattct atgaatgccc catggtttat tcccggtatt gatttctctg accacctgaa
       61 ttattggcaa cacgatattc ccgccgtaat gattactgac accgcttttt atcgtaataa
      121 acaataccac ttgcccggtg atacagcaga cagattgaat tatcagaaaa tggctcagat
      181 ggtgttataa ccttgttaca caacagtaaa taataaaaat ttctcgaggc gggtccagaa
      241 acagcgacat gtacatttta ttttccctcg tctgttttaa gatgcgaaac ataaaattca
      301 atggaggaaa aataaatggg aatgattggt tattttgcag aaattgactc agaaaagatt
      361 aaccaactgc ttgagtctac tgaaaaacct ttgatggata atatacatga cacgctttca
      421 ggattacgcc gactggatat tgataaacgc tgggattttt tacactttgg gctgacaggc
      481 acccctggtt ttgatcccgc gaagaatgat ccgctgagtc gtgccgtgct tggtgaacac
      541 agcctcgaag atggcataga tggcttcctg ggattgacct ggaatcagga attagccgcg
      601 acaatcgacc gactggaatc actggatcga agtaagctgc gtaaacagtt ttccattaag
      661 cgactcaatg aaatggagat ttatccggga gtgacctttt cagaagagtt agaggggcaa
      721 ctctttgcct cgatcatgct tgatatggaa aagctgatta gcgcgtatcg acgtatgctg
      781 cgacaaggga atcatgcgct gacggttatt gttcggtgat ggtgtcagag cgccaaaaaa
      841 aaccgccgaa catgtcggcg gctttctgac ttacaaacta acagattaca tcagcggcat
      901 tgctaaccgc acaatactaa tcagcggttg tggccataca cccagcacca gtaccaacag
      961 tgcagaaatc agcaccacga taccgcccgc gctgtactgc cagtttgacg gtgcatcgcg
     1021 acccggttgt tccggtgcgt gcaggtacag gctcaccgcc acgcgcaggt agtagtagag
     1081 gccgattgcc gaaccgacaa ccacggcacc caccagccac cacaagtgtg cctggacacc
     1141 gaccgccagc acgtagaact taccgataaa gcccagcgtc atcgggatac cggccagaga
     1201 cagcatcatc accgtcatca ctgccgcgag gatcggacga tgccagaaca gaccgcggta
     1261 agagaacagg gaatcagcat ccgggccacg atacgggctg gacatcaggc tgaccacgcc
     1321 gaacgcgccg aggctgctga acagataacc ggccaggtaa ccccctaccg cttccatcga
     1381 catctcgccg gtttgcagcg caatcagcgc caccagcaga tagccgaggt gagagataga
     1441 tgagtaaccg agcagacgtt tgatgttggt ctggctcaac gccatcaggt taccgaagat
     1501 gatggaggca aaggcgataa tcgccagtac tacgcgaatc gcttcgctgt cacccaccgg
     1561 tgcatagagg aacagacgca tcaccacacc gaagatagcg attttgctcg ccgtcgccag
     1621 gaaagtggaa accggcgcag gcgcgccttg gtatacgtct ggcgtccaca ggtggaacgg
     1681 caccagagag agtttgaagc cgaggccaac aatcatcatg ccgaaacctg ccagcaacag
     1741 cggctcgttg agcataccgt cgccgaggtt tttacccagc gcgacaaacg acaggtcgcc
     1801 agactgcgca tacaccagcg ccataccgaa cagcaggaaa gaagacgctg cggcagaaag
     1861 gatggtgtat ttgatactgg cttccagcga acgtttctgg cggaaagcgt aaccgaccag
     1921 gccaaacagc ggcaaagaga tcagttcaat accgaggaac agagacgcca gatggtttgc
     1981 attcgccagc aggatcccgc ccagcgcggc aattaacacc aacaggtaga actcatcctt
     2041 gttgtcgtta tagccttcaa gccacgggta ggcgaaagta caggtggcga ggctcgccaa
     2101 caataccagc ccggtgtaaa gcatggcgaa accatcaacg cgcatcagcg gcgtaacgtc
     2161 catagcgccc gcctggccaa caaaccagag cgaaaccagc gccgcgttaa gcccaataac
     2221 cgagagcgta gcgttgagga aatgattgcg tcgccacgca atggagagca tcacaaccac
     2281 caccgttaag ccgacgatca gcaacggtag cagtgcgatc aggttttgtg gagttattgt
     2341 catggcgatt tacggccttg tagtagtaac ggaattaaca aaccactgct ggatattgcc
     2401 aatcgcggag tgcgaggtat ccagaatcgg ctgcggatag aagcccagca gtaccagcag
     2461 caccaccagc aacaggatca taaacagctc acgcagcgac atccctggca gttcctggct
     2521 ggcaatctgg cttttcgctt taccgaagta agcgcgatgc aacatcgcca gcgaataaac
     2581 agatgcaaag accagcccaa aggtagagat aacggtaatc accgggacaa cctggaagct
     2641 gccgaacaga atcataaatt cgccgacgaa gttaccggtg ccaggcatcc caagcgttgc
     2701 caccgcaaag aacagcgaca atgctggcag ccatttcatc ttgctccaca gaccgcccat
     2761 catgcgcatg tcgcgggtat ggatacgttc ataaagctga ccacaaagaa taaacagacc
     2821 cgccgccgac aaaccgtgcg caatcatctg gattaccgcg ccctggtagg ccaactggct
     2881 gccggtgtag atagcaatca gcacgaagcc catgtgggaa accgaggtgt aggcgatcag
     2941 acgtttgata tcggtctggg cgaaggccat ccacgcaccg tagaagatgc cgataacacc
     3001 cagccacata gcaattggcg cgaactctgc cgacgcgttc gggaacagcg gcagggagaa
     3061 acgcagcaaa ccgtaagcgg cagttttcag caagatcccc gcgaggtcaa cggaaccggc
     3121 ggtcggagcc tgggagtgcg catccggcag ccagccatgc agcggaacca ccggcatttt
     3181 gactgcgaag gcgatgaaga agcccagcat taacaggtat tccacaccac tggacattgg
     3241 cgtattcagc agctcttcat agttgaaggt ccagacgccg gtcgcattgt agtgaacaaa
     3301 aaccagcgcc aggatggcaa tcaacatcac caggccactc gcctgggtgt aaatgaagaa
     3361 cttggttgcc gccgtgatac gcgttttacc gtcagaggct ttatgccccc acagtgcgat
     3421 caggaagtac atcggcacca gcatcatttc ccagaagaag aagaacagga acatgtcgat
     3481 ggcaaggaac acgccgataa cgccgcccag gatccacatc aggttgaggt ggaagaagcc
     3541 ctgatatttt tcgatctctt tccacgaaca gagtaccgcc agcacaccga gcagaccggt
     3601 cagcacgacc atcagcagcg acagaccgtc aatggcgaga tgaatagaga taccaaaacg
     3661 cgggatccac ggcatgtcga attcagactg ccactgcgga attccggcgg attgcgtcag
     3721 tgaataaccg ccctgcaacc acagttgcag cgacagcgcc agcgtcaatc ccatggtgat
     3781 cagcgcgatc cagcgtggca ccttgacgtc aaagcgttcg gtctgccagc acaggaagcc
     3841 gccaataaag ggaattaata ttagccaggg tagtaacatg gcgatcttta ttccttgtaa
     3901 aagtcccgtc aggaccggat tttcaacgaa ttctcacgac agaaaattct cttcggactg
     3961 ggggtagtgt cggatgcgcc gcgaaggcag cttatccgac ctacgttctt atatgcccag
     4021 gggcaatccc acaatcctta actcaacgca gtaccatcaa cagtgccagc accacgaccg
     4081 caccgatgct catggatgcc acataccagc gcagataacc gttctcgctt aacagcaggc
     4141 ctttacctgc aaagcgggaa agaaccgccg gaatgttcat cattgagttc agcggatcgc
     4201 gtttcagcaa ccaggcaata cccaggaacg gcttgacgaa cactttgtcg tacagccagt
     4261 caaagcccca ggcgttgtac caccaggtgc ccagcagacg gcccggcgca ctgttggcaa
     4321 tggaggtcac cagagtacgt ttaccctgcc acagccaggc tgccagcaga ataccgacca
     4381 ccgcgaccac gccagaggta atttccaggg tcaacatgct gccgtgcgcc agttccgtcg
     4441 tttgcggaag cacgctctgc agcggcggta caatcagtgc gccaacgaag gtggaaagga
     4501 tcagcagcac aatcagcggc aggctgtgag ttaccccttt cacggcgtga gcgtgaattt
     4561 gttcttttcc gtggaagacg atgaaaatca tacggaaggt gtagagcgag gtcataaacg
     4621 caccgaccag acctgccacc atcagattga tatgaccatt cgccatcgca cccgcgagga
     4681 tctcatcctt actgaagaag cccgcagtga ccagcggtag tgccgacagt gctgcgccgc
     4741 ccaccaggaa gcagaaataa accagcggaa tagatttacg cagaccgccc atcttgaaga
     4801 tgttctgttc gtgatggcag gccagaatga cggaaccgga tgccaggaac agcagcgctt
     4861 taaagaacgc gtgagtcatc aagtggaaaa tcgccgcatc ccatgcctgc acgccaagcg
     4921 cgaggaacat gtagccaatc tggctcatgg tagagtaagc gagaacacgt ttgatgtcgg
     4981 tctgtaccag cgcggcaaaa ccggccagca gcagcgtaac cgccccgaca atgcccacca
     5041 gatgcagaat ttccggcgtc atcaggaaca ggccgtgggt acgggcgatc aggtagacac
     5101 ccgcggttac catggttgcg gcgtggatca gcgcggagac aggcgtcggg cccgccatcg
     5161 cgtcggcaag ccatgtctgc aacggcaact gcgcagattt accgaccgca ccgcccagca
     5221 gcatcagcgt cgcccacatc agcatgttat tgccgtcagc aaagtgcgct ggtgccagtt
     5281 ccaccatttc gcggaagttc agggtgccca gttcgttgta aagaatgaac agcgcgaaag
     5341 cgaggaacac gtcacccaca cgggtcacga cgaacgcttt cattgccgct gcgccattct
     5401 tcggatcggt gtaatagaac ccgatcagca gataggagca caggcccacg ccttcccagc
     5461 cgaggtacat cagcagcagg ttatcggcga gaaccagaac taccatgctg gcgatgaaca
     5521 ggttggtgta ggcgaagaag cgagagtagc cctcttcacc gcgcatgtac caggaggcgt
     5581 acatgtgaat aaggaaaccc acaccagtga ccaccgagag catggtcagc gacaggccgt
     5641 ccagcaccag gttaaaaccg atgttaaagt cgcctaccga catccacgtc cacagcggct
     5701 ggctgtatgc ctgctcgccg ttagcgaaga aatcaacgcc gataaaggcg gttaccagcg
     5761 ccgccaggcc cacagagcca acgccgacga tcgccgaaac gttttcagac cagcgcccac
     5821 gggagaacgc cagcaggacg aagccaatca atggcaaaat aatggttaag gcaagcatgt
     5881 tcatccgcgc atctcactta ctgaatcgat gttcaggttc tggcgacgac ggtgaagttg
     5941 cagcagcagc gcaaggccga tactcgcttc tgccgccgcg aggctgatgg cgagaatgta
     6001 catcacctga ccgtcggtct gaccccagta gcttccggcg accacaaagg ccagcgcgga
     6061 ggcgttaatc atgatttcca gaccaatcag cataaacagc agattgcgac ggataaccag
     6121 accggttaag ccaagaacga ataagattgc cgagaggatc aatccatgtt gtaaggggat
     6181 catgcgtgct cctccgtttt tcttttcgcg ctgtcgtctt tacgattgct cagcacttca
     6241 cccgcacgct cttcacgacc gacgtggaag gccacaacca gacccgcgag cagcagcata
     6301 gaagccagtt ccaccgccag tacgtaaggc ccgaacagcg taatacccac tgctttagca
     6361 ctgattggcg taccgtcgat accctgatca ttaacaccaa ggatggcgta aacaatcacc
     6421 accagcatga tggccgacaa aattgccgga ccaatccaca cctgcggttt cagccactgg
     6481 cgttcctgtt cgatttctga accgcccagg ttgagcatca tcaccacgaa cacgaacagc
     6541 accataatgg cacccgcgta gacgataatt tccagcgcac cggcgaagta agcgcccagt
     6601 gagaagaaca ccccggaaat cgccagcagc gaaataatca ggtacagcag tgcgtgtacc
     6661 ggattggtat gggtgatcac tcgcaaggtc gcaagtatgg ctatcaggcc acagatataa
     6721 aaagcgaact ccattgcccc tctccttacg gtaacaggct cttgacgtcg ataggcttgg
     6781 cttcgttctc tgcttcgccc ttatctttgc cgtcgattgc catacctgcc atccggtaga
     6841 agttatattc cgggtatttg cccggaccgg agatcagcag atcctctttt tcgtaaacca
     6901 gatcctggcg cttgtattcc cccatttcga aatccggggt taactgaatc gccgtggtcg
     6961 gacaggcttc ttcgcacaga ccacagaaaa tgcagcgtga gaagttgatg cggaaaaatt
     7021 ccgggtacca gcgaccgtct ttggtttctg ctttttgcag cgagatacag ccgaccgggc
     7081 aggctaccgc gcagaggtta caggctacgc aacgctcttc gccgtccggg tcgcgggtca
     7141 gaacgatacg accacgataa cggggcggca gatagaccgg ctcttccggg tacattcgcg
     7201 tttcgcgttt ggcgaacgcg tgcaggccga tcatccagat actacgaacc tgggtgccga
     7261 aacctactaa caattctttt aaggtcatgg tcttattgcc ccttattgcg cctgccagag
     7321 aatgacagcc gccgttacca gcaagttgat cagcgtcagc ggcaggcaga ttttccagcc
     7381 gaaggacatt acctggtcat aacgcggacg cggtaacgac gcacgaatca aaatgaacat
     7441 catcataaag aacgcggttt tcagcgcgaa ccagatgaat ggcggtaaca acgggccttg
     7501 ccagccaccg aagaacagcg tcaccatcaa tgcagagatg gtcacaatcc cgatgtactc
     7561 acccacgaag aacagaccga acttcatacc ggaatattca atgtggtaac catccgccag
     7621 ttcctgctcg gcttccggct ggtcaaacgg gtgacggtga cataccgcca cgcccgcgat
     7681 ggcaaaggta ataaaaccaa agaattgcgg gataacgttc cacacatgcg cctggctgtt
     7741 gacgatgtcg gtcatgttga atgaaccggc ctgcgccacc acgcccatca gggaaagccc
     7801 gaggaacact tcgtagctca gggtctgcgc agaagcacgc atcgcaccca gcaacgagta
     7861 tttgttgtta cttgaccagc ccgcaaacag caccgcgtaa accgccagac ctgccatcat
     7921 caggaagaac aaaatcccga tgttcaggtc ggcaaccacc caacccggac tgactggcac
     7981 aatcgcaaag gccagcagca gcgaggtaaa ggcaatcatc ggtgccaggg taaagatgac
     8041 gcgatccgag aatttcggga tccagtcttc tttaaagaac attttgatca tgtccgcaac
     8101 cagctggagc gaaccgcccc agccaacacg gttaggtcca taacggttct ggaacagacc
     8161 cagcaggcga cgttcgccaa agctcatgaa tgccccacag gtgacaacca ccagcaggat
     8221 caccaccgct ttgaggatgg tcagcaggat ctcaatcagt tccggtgata tccaactcat
     8281 tgttgtgcct ccttgagatc ctcaagatgc gcgccagcca gcaccggagc aatgccggac
     8341 atacccatcg gcaagcccac ctgccctgcc gtcagtcctt cggcgatttc aaccggcagc
     8401 gtgaccgtgt tgccatcgta actaaaggag acgcgtgtac ctgcgttcac acccaacttc
     8461 gcggcatccg ctgggttgag tttgatgtac ggctgcggca tacggctctg gaagaccgga
     8521 gcacgctgtg acaattcatc gctgccaaac aggtggtaat acggcgcaat acgccatttc
     8581 ccgtcctgcg gctggaagcg taccggtacg ctggtgaagt aatccagacc attctcgctg
     8641 gtttcaaaca gacgcacgcc cggatcgcca aagcgcagtt tgccgcccac ttcgtcctgg
     8701 aatttgttcc acgcctgcgg ggagttccag cccggtgccc aggcaaacgg cacttgcgaa
     8761 cggtgcgcgg tcggctggtt gttaccttcc atcgagaagg tgaacatggt gtcaatatcc
     8821 tgcggctgac gcggctcatg aacgctgata ttggcgcgca tggcggtacg accgctgtaa
     8881 cggtgcggtt cacgggccag tttctgccca cgaatacgga atgtcgcatc cggcgcagca
     8941 tctttgatac ctgccagttc cgggattttc gccacaacag cgtcaatcac atggtcgagc
     9001 tgcgtccagt ccacttcacg gctcagcagg gtgctgtgca gcgagtgcag ccagcgccag
     9061 ctttccagca tgacagtttt gctgtcgtaa taagccggat cgtaaacctg gaagaaacgt
     9121 tgggcgcgac cttcattatt aattaccgta ccgtcgcttt cagcaaagct ggcggcggaa
     9181 agtaccagat gggcgttttc catgatcgct gtacgctgat ggtcaaccac catcaccagc
     9241 ggtgctttag ccagcgcagc attcacgcgg gtagcagaag cgtgacgatg cagatcgttt
     9301 tccaacacca ccaccgcgtc ggcgcgtccg gtttccagtt cggttaacgc ttcttcaagc
     9361 gaaccgccac ccataatgcc cagccccatg ctgttgacgg aacgggcaat catggtgata
     9421 ccgacgtcag cgccgcgacc tttcagggct ttcgcgacgt tagccgccgc ctgaatcacc
     9481 tctaagctac cggcgttcgt cccggagata atcaacggtt tcttcgcacc tgccagtgcc
     9541 tgcacgatga cgtcgatttt gctttgcagc tcaggttcga taccgtcaac cgctggtgca
     9601 gagttatcca gcgcatgggc gatggcaaaa cctaaacgcg cctgatcttc aaccggtgcg
     9661 cggtaagtcc acgccgcgat atcatccaga cgggtgtcat caacgttggt aacaaacagc
     9721 ggatgcttcg cacgttgacc gatgttaagg attgccgcaa tctgccagtc agccactttc
     9781 tgtgctgccg ccatttcgcg cgctttacct ttcaccgcct gacgcactgc cagcgcgacg
     9841 cgcgcgccgg tctgggtaac gtcttcgccc agcaccagta ccgcatcgta agattcgatt
     9901 tcgcgcagag ccggagtata aatgccgcct tcacgcagca ctttcagcgc cagttgcaga
     9961 cgttcctgct caccgtgagc gataccggtg tagaagtttt cttcgcccac cagttcacgc
    10021 agtgcaaagt tgctttccac gctggcacgc ggagaaccaa taccgatcac tttcttcgac
    10081 tgacgcagaa tatctgccgc gccctgcatt gcctgttcgg cgttgagggt aatgaaatca
    10141 tcgccacgac gctgtactgg ctgacgcgga cgatccttca ggttgacgta accgtaaccg
    10201 aaacgaccac ggtcgcagag gaagtagtgg tttaccgtac cgttgtaacg gttttcgata
    10261 cgacgcagtt cgccgtaacg ttcaccgggg ctgatgttac agccgatgga acattgctgg
    10321 cagatgctcg gcgcaaactg catatcccat ttacggttgt aacgctcgga gtgcgttttg
    10381 tcggtaaata cgccggtcgg gcaaatttcg accaggttac cggaaaattc gctttccagc
    10441 gtgccgtctt ccgggcgacc gaagtagacg ttgtcgtgcg cgccataaac gcccagatct
    10501 gtaccgtcag cgtaatcttt gtagtaacgc acacagcgat agcaggcgat gcagcggttc
    10561 atttcgtgag agatgaatgg ccccaaatcc tgattacggt gggtacgttt ggtgaaacgg
    10621 tagcgacgga agctgtgtcc ggtcatcacg gtcatatcct gaagatggca gttaccgcct
    10681 tcttcacata ccggacagtc gtgcgggtgg ttggtcatta accactcgac cacactttca
    10741 cggaactgtt tcgcttcttc gtcgtcaatg gaaataaagg tgccatcgga agccggtgtc
    10801 atacaggaca tcaccaggcg accacgcgtg tcttccgcgt tttggtattg cttcaccgca
    10861 cactggcggc aagcaccgac gcttcccagc gccggatgcc agcaaaagta aggaatatca
    10921 aggcccagag acagacaagc ttccagcagg ttgtccgctc cgttgacctc gtattctttg
    10981 ccgtctacat gaattgtagc cattagcatg cttccagttt tctcggtcag ggaccgagcg
    11041 ttaatcgaaa ttcggttacc agcgctcttt cagcaggttc ggctgaatcc cattaatcaa
    11101 atgggtattg ctgaacggct gtttgattcc cgcctcaaat tcttcgcgga aatatttgat
    11161 ggcgctctgt aacggctcca ctgcaccagg tgcgtgggca cagaaagttt tacccgggcc
    11221 taagaatcga cacagttgct caagtgtttc gatatcgccc ggctggcctt cgccacgctc
    11281 cagcgcacgc agaattttca cgctccacgg cagaccgtcg cggcacggcg tacaccagcc
    11341 gcaggactca cgggcgaaaa actcttccag gttacgcacc agcgacacca tgttgatctc
    11401 atggtcaacc gccatcgcca gcgccgtacc cagacggctg cccgctttac cgatactttc
    11461 gaattccatc ggcagatcaa ggtgcgcttc ggtcaggaag tcagtccccg cgccgcctgg
    11521 ctgccaggct ttaaatttca gaccatcacg cataccaccg gcgtaatctt cgaggatctc
    11581 gcgtgcggtg gtgccgaacg gcagttccca cagtcccgga tttttcaccc gaccggagaa
    11641 gcccatcagc ttggtgccag catctttact tttcgagatg ttctgatacc actccacgcc
    11701 gttagcgagg atcgccggaa cgttacacag ggtttcgacg ttgttgacac aggtcggttt
    11761 gccccatacg ccggaggttg ccgggaaggg gggtttcgag cgtgggttag cacgacgccc
    11821 ttccagggag ttgattaacg ctgtttcttc cccgcagatg tagcgccctg ccccggtatg
    11881 gacgaacagt tcgaagtcga aacctgttcc cataatgttt ttgccaagca agcccgcttc
    11941 agtggcttcg gcaatggcgc ggcgcagatt tactgccgct tcgatatatt cgccacgcag
    12001 gaagatgtag ccacggtaag ctttcagcgc aaacgcggag atgagcatac cttccaccag
    12061 caggtgcggc agttgctcca tcaacaggcg gtctttatag gtgcccggct ccatttcatc
    12121 ggcgttacac agcaggtaac ggatgttcat ggattcgtct ttcggcatca ggctccactt
    12181 caggccagtc gaaaagcccg ctccgccgcg ccctttcaga ccagcgtctt ttacctgatt
    12241 aacgatttcg tccggagaca gcccggtcag cgccttacgc gccccttcgt aaccgttttt
    12301 gctgcggtat tcgtccagcc acactggctg tttgtcatcg cgcagacgcc aggtcagcgg
    12361 atgcgtttcg ggagtacgga taatgttttt catttatacc gctccagcag ttcagggatc
    12421 gcttccgggg tcagatgcgc gtgagtgtcc tcatcgatca tcatgtttgg ccctttatca
    12481 cagttcccca ggcagcaagt tggcagcagc gtaaagcggc catcaaatgt cgtttgccct
    12541 ggtttgatgt tcagcttttt ctcgagcgcc gcctgaatac cctgataccc gttgatatga
    12601 cagaccacgc tgtcgcaata acggatcaca tggcgaccaa ccggctggcg gaagatctga
    12661 ctgtagaacg ttgccacacc ttcgacgtcg cttgccggaa tacccagcac atcggcgatc
    12721 gcgtggatcg caccatccgg cacccagcct cgctgcttct gaacgatttt cagcgcttca
    12781 atggacgccg cacgcgggtc ttcgtagtgg tgcatctcgt gctcaatcgc ttcacgctct
    12841 gccgcactca gctcaaaagc ctcggtttgt ggttgttgat tctcgtgcat aattagcggt
    12901 ccacatctga cataacaaaa tcgatactgc ccagataaac aatcaggtca gacaccaggc
    12961 tgccgcggat cgccgccgga atttgctgca aatgcgcata actcggcgtg cggatacgag
    13021 tgcgataact gatggtgcta ccgtcgctgg tcaggtagta actgttgatc cccttggtcg
    13081 cctcaatcat ctggaaagat tcattggcag gcatcaccgg cccccacgac acttgcagga
    13141 agtgggtgat cagggtttcg atatgttgca gcgtgcgctc tttcggcggc ggcgtggtca
    13201 gcgggtgatc cgctttgaac gggccttccg gcatgttgtt gaggcactgc tcaagaatgc
    13261 gcagactctg gcgcagctct tccactttca gcattacgcg ggtgtagcag tcagaaacac
    13321 caccaccaac cgggatttca aagtcgaagt tttcatagcc agaataagga cgcgccttac
    13381 gcacgtcgaa gtcgatcccg gtagcacgca ggcccgcgcc agtggtgccc cactccagcg
    13441 cctctttcgc gccataggcg gcaacgccct gggaacgacc tttcagaatg gtattttgca
    13501 gcgccgcttt ctcgtaagac gccagacgtt tcggcatcca gtcgaggaac tcacgcagca
    13561 ggcgatccca gccgcgcggc aggtcgtgcg ctacgccgcc aatacggaac cacgccgggt
    13621 gcatacggaa acccgtgatc gcttccacca gatcgtaaat tttctgacga tcggtaaagg
    13681 cgaagaacac gggcgtcatt gcgccgacgt cctgaataaa ggtcgagatg tacagcaggt
    13741 ggctgttgat acggaacagt tcggagagca taacgcgaat gacgttaacg cgatccggca
    13801 cggtgatccc ggccagtttc tctaccgcca gcacgtaagg catttcgtta acgcagccgc
    13861 cgaggtattc aatacggtcg gtatacggaa tgtagctgtg ccaggactgg cgctcgccca
    13921 ttttctccgc accacggtgg tggtagccga tgtctggtac gcagtcgaca atctcttcgc
    13981 cgtcgagttg taaaacgata cggaaagccc cgtgcgccga cgggtggttc ggaccgaggt
    14041 tgaggaacat gaagtcctcg ttttcggtgc cgcgcttcat cccccactct tccggtttga
    14101 aggtcagggc ttccatctcc agatcctgtt tggctttggt cagctcaaac ggcgagaatt
    14161 cggtagcgcg cgccgggtaa tctttacgca gcgggtgacc tttccaggtt tgcggcatca
    14221 tgatgcggcg caggttcggg tgaccgtcga aagtaatgcc aaacagatcc caggtttcac
    14281 gctcatacca gttagcgttc gggaacagtt tggtgaaggt cggtacgtgc aggtcgtttt
    14341 ctgccagcgc caccttcagc atgatgtcgc ggttacgatc gatagaaatc agatggtaga
    14401 aaacggaaaa atccgcggca ggtaaccctt cgcggtgtgt gcgcagacgt tcgtccatgc
    14461 cgtgtaagtc aaacagcatg acgtaaggtt tcggcagttt ctttaagaaa tcgccaactt
    14521 ccagtaattg ttcacgcttg atccacacaa cgggaacccc ggtgcgagtc gcctgaacag
    14581 taaaggcatc cggcccaaaa cggttgcgca gttcgccaat taccggatca tcaagatgat
    14641 cgcgggtctg ccaggcgggt tcttgcgcgg ttaagtcggt catattgttc accattgcaa
    14701 atggtccgtg gtgactgtcg gcgcagtaag cttcgcgaaa tagatttagg aataagcgaa
    14761 gaaaaatccc tttgccgaca ggcgcaaatt aaatctcgtc aggtgtacgc aggttggtta
    14821 cggcaatgcg ttcaccgcgc ttgcgttcgc gctctgattg catattggcg cgataaacgc
    14881 cctgatcgcc aaccacccag gagagcggac gacgttcttt gccgatagat tcctgcaaca
    14941 gcatcagtgc ctgcatgtac gcttcaggac gcggcgggca gcccgggata tacacatcaa
    15001 ccgggatgaa tttatcgacg ccctgcacaa cggaataaat atcgtacata ccaccagagt
    15061 tggcacaggc acccattgag ataacccatt ttggttccag catctggtca tacagacgct
    15121 gaataaccgg tgccattttg gtaaagcagg ttcctgcaac caccatcagg tcagcctgac
    15181 gcggcgaagc acgcaatact tctgcgccaa aacgcgccac gtcatgcacc gcggtaaacg
    15241 aagtcaccat ctcaacgtaa cagcaggaaa gaccgaagtt atacggccaa attgagtttt
    15301 tacgacccca gttaaccatg tcattgagct tgcccataaa cacgtttttg ttaacttctt
    15361 gctccagagg gtcggttacg atctcctgct tttgcagggg gtaacggtcg ttctcaccgt
    15421 tgggatctat gcgggtgagc gtataatcca tcttaatgcc tcgcggttag cgttgacgat
    15481 tagcgatact gttcgtttcc gggttcatac gctcgcggcg tgaacgcgcg ggcgtccagt
    15541 ccagcgcgcc aatacgcacc agataaacca gacctgccag taacacaaaa ataaaaattg
    15601 cagcttccac aaagcctacc cagccgcttt cgcggataga ggttgaccat gcgaacagat
    15661 acagcgcttc aacgtcgaag ataacgaaga acatggccac cagataaaac ttggcggaca
    15721 ggcgtaagcg ggcggagccg accgagtcga taccggattc aaacggcacg tttttcgacc
    15781 tcgcgcgtgc gcgaccgcct aaaaaccaac cgcctaccag cattaggcaa cacaggccaa
    15841 tggcaacgat aagaaagata gcgaatgccc agtgatgagc gatgacttca gtggatgttg
    15901 acatactcat tgcttactca tcaaaagtag cgccagattc actgctcttc acagcagatg
    15961 gacgccacat cgattcatgg ggaggaataa aaaaaacctt acaatcactg tagaaattct
    16021 tttatacagc taattgatgt ggtcttttac tcctttctat aaccttttgt caactttaac
    16081 aaaagtttct tcatattagt ttacataata tcaacaccat tagcatttaa tgccctttca
    16141 ccccagatcc ttgacgactc caggataatt agatgttgtt gaatcgtgtc cgttgtgaag
    16201 caatggaaaa aatacgggtc tattttgaca ggaatttgtg tcgattcctc cccccaaaag
    16261 agagtatttt cttgatctgt gacacgcttt tgtcattcca taacaaaaac gcagcaacaa
    16321 atttacgtat tttttaacat cattgtagca ggtgattttt ttcaggcgat tatttgtgcg
    16381 ttcgggacgt gaatctctgg agattgaaaa atgaacagtt ttgtacgttc tgcactatgc
    16441 gaggaaggat ttttactaaa aaaaagccgc tggggtttaa aacaccccca gcggctcgtt
    16501 ttttacacta ttgtctcagg aattatctat cgtccgtcga ttactcgata tccctttcaa
    16561 tcaacaatga atcatcccct tccggagcag acattgggct gtattgccac ggattatggt
    16621 agctctccat cgcctgatag atcacctggg ccagctcatt attactggac gggtcatagc
    16681 acagcaaata ttcggtatca ggtagcggcg gtaagccatc tactccactc agcacacgca
    16741 ggtccgggct catcatctca accggccttg ccgtcacgcc aagaccggct ttcactgccg
    16801 cacgaacggc cggaagcgtc gaggcgacat aagccagtcg ccatggaata tctgctttat
    16861 taagcgttgc cagcaccata tcgcgaaacg gacttggatc atccagcaat acaagaggga
    16921 tcggctcgcc tttttgcaat acgtattccg ctgcgcagta ccagtgtgtt ggcgaggtac
    16981 gcaggttcaa tgccttaaac gctgaaggac gatgggtggt taccatcaaa tccacttcct
    17041 gggattccag catttctgcc atataggcat tacgtttaac gcggacatcc agcgctaatt
    17101 tcggataaac cgaactcacg cgatttaaca ggaaaggtaa gatcgtatcg gcagattcat
    17161 ctgaagcacc gatagttaac acgccctgaa gattactgaa cattaatgat gagcaggcct
    17221 catcattaaa acgcaggatt ttcctggcgt aaccaagaag ttgaatgcca tgttcagtta
    17281 acagtttgtt gcgaccgtga cgagcgaaca gttctttccc aacgagttgt tccagacgct
    17341 gcatttgctg acttacggcg gactgagtac gacacacagc ggcagctgcg gcagcaaaag
    17401 tgttcagatc ggcaacagca acaaatgttc tcagcagatc gaggtcgagg ttaattatcg
    17461 gacgatttgc acttatcata tattatcact tactggcggc tcatactgag ctggttaatg
    17521 ctgtgcacac acaaacaagc aattccattt gtaatgtgcc tccctggcag tttcatccgg
    17581 aacccggacg aaagtaaaaa tgcatatgag ttgcactaaa aaagcgactc acattgttcc
    17641 gttataatgc ctgaagtaga tcacagaata tatcttcagg gatcgcatat ctattaagtt
    17701 actcactctt ttctatttat gacatgcgcg tgtttgtata aatgtaaatg tgagtccttg
    17761 ttccactctc gtgcagcatc gctggtcata cgcgaacacg tacaaacagc aatggtgagg
    17821 cggcatcaag agcagggatc cgtcatttat gcgagcattt taccccaaaa accttttatt
    17881 tataagggcc attgcgaatc atctgatgca aagttatgtt atgttaggca aagtaatctt
    17941 ctattattaa taagcacatc aaaacctttt tgaatattaa ataataatta attagcataa
    18001 tcctcattca ttaattccgc ttaacaatag tttcacacct tgcccccatt acgacacctc
    18061 ggaaatcatc acgctgttaa actctccgta atgcggaaat atcatcatcg cgtttcatta
    18121 gtgaattctt aaatgaggca ttttcacaca attatcttac agataaaaaa accagactta
    18181 caattaagaa tcagaataat tcactatata acattgcatg tgaagcatat acacctcgtt
    18241 attttgtcat tatcaagtta ttaacagcac aatcgagcct tcccctctgg caaaatctta
    18301 ttctgcagac cttcaaaaca ccgtcctggg ggagtacatt gttctaagct gacttccacg
    18361 gcagggagtg gcgataacag caaaaaaggt caagattcat gtcccccatt gaaaaatcca
    18421 gcaaattaga gaatgtctgt tatgacatcc gtggtccggt gctgaaagaa gcaaaacgcc
    18481 tggaagaaga aggtaacaag gtactgaaac tgaacatcgg caacccagcc ccgttcggtt
    18541 ttgacgcgcc agatgaaatc ctcgttgacg tgatacgcaa cctgcctacc gctcaagggt
    18601 attgcgattc caaaggtctt tactccgcgc gtaaagccat catgcagcac taccaggctc
    18661 gtggcatgcg tgatgttacc gtggaagata tttacatcgg caatggtgta tcggagctta
    18721 tcgttcaggc aatgcaggca ttgctgaaca gcggggacga aatgttggtt cctgcaccag
    18781 attacccact atggaccgcg gcggtttcgc tttccagcgg taaagcggtg cattatcttt
    18841 gcgatgaatc ctctgactgg ttcccggacc tcgatgatat tcgcgctaaa attacgcctc
    18901 gtacgcgtgg gatcgttatt atcaacccaa ataacccaac cggcgcggta tattccaaag
    18961 agcttttaat ggagattgtg gagattgcac gtcagcataa tctcattatc ttcgccgatg
    19021 aaatttatga caaaattctt tacgacgacg ctgagcatca ctcaattgcg ccgctggcac
    19081 ctgacctgct gaccattacc tttaacggac tgtcgaaaac gtaccgcgtt gcaggcttcc
    19141 gtcaggggtg gatggtgttg aacgggccga aaaaacacgc caaaggctac atcgaaggtc
    19201 tggaaatgct ggcttcaatg cgcctgtgtg ctaacgttcc tgcgcaacac gccattcaga
    19261 ccgcgctggg tggttatcag agcatcagtg aatttattac ccctggaggt cgtctttatg
    19321 agcagcgtaa ccgcgcgtgg gaactgatca acgatattcc gggcgtttcc tgcgtgaaac
    19381 ctcgtggtgc gctgtatatg ttcccgaaaa tcgacgccaa acgctttaac attcacgacg
    19441 atcagaaaat ggtgctggat ttcctgttgc aggaaaaagt tctgttggtg caagggacgg
    19501 cattcaactg gccgtggccg gatcacttcc gcattgtcac gctaccgcgt gtcgatgata
    19561 tcgagctgtc tttgagcaag ttcgcgcgtt tcctttctgg ttatcatcag ctgtaatctt
    19621 aatttcactg ccggagattg catccggcag cgttatcccg ccacaatgac ctgatgatgt
    19681 catcatacgt aaggtcacta tgaaacagag ccattttttt gcccatctct cccgcctgaa
    19741 actcattaac cgctggccgc taatgcgcaa cgtgctgacg gaaaatgtgt ccgaacacag
    19801 tttgcaggta gcgatggtcg cccatgcgct ggcagctatc aaaaatcgaa aatttggcgg
    19861 taatgtcaac gccgaacgta tcgctttact ggcgatgtac cacgatgcct cagaagtgct
    19921 caccggcgat ctccctactc cggtgaaata cttcaattcg caaatcgctc aggagtacaa
    19981 ggctattgaa aaaatcgctc agcaaaaact ggtcgatatg gttccggaag agctgcggga
    20041 tatctttgcg ccgttaattg acgagcatgc atatagcgat gaagaaaaat cgctggtgaa
    20101 acaggcagat gcactgtgtg catatctgaa atgtctggaa gaactcgcgg ccggaaataa
    20161 tgaattcttg ctggcaaaaa cgcgactgga agcgacgctt gaagcgcgtc gcagccagga
    20221 gatggactac ttcatggaag tatttgttcc cagcttccat ctttcgctcg atgagattag
    20281 ccaggattca ccgctgtaag cagccggagt ctgcgtcgca tcaggcaata agcgccggat
    20341 gcgacatcag gctcttgtca aaacggaaac agcatcggga tcatcaccac acaaaccgcc
    20401 atcacgataa tggtgaacgg tacccccaac ttcacaaagt cactgaagct gtaatttccc
    20461 ggacctaaaa ccagtgtgtt aacaggtgaa gaaaccggtg tcataaaggc ggcggatgct
    20521 gccatcgcca cgaccatcgc gaatggataa ggcgacaccc ccatcgtttt ggcagcagcc
    20581 agcgcaatcg gagccatcaa caccgccgtc gcggtattag agataaatag cccaataacc
    20641 gccgacaaga caaacaaaca ccccagcatc atatgtggcc cgtaaccacc gccaatgtcc
    20701 atcagccctt tcaccgccag cgcgacacct cccgttttct gtaatgccac agcaaacggc
    20761 atcatcccaa cgatcaaaat aatgctcggc cagtgaatgg atttataggc gctttcagca
    20821 tctatacagc ggaatttccc catcagcagg caggcgatga tagcggcaac aggattagga
    20881 atttcatctg tcagcattaa cgccaccatt agcaccagac agaaaatggc atggggtgcc
    20941 tggctgtgcg cgggcgatgc ttcactcacc tcttccggta agttcagcgc tacgaagtcg
    21001 cggccctgtt tggccagcat accgatcagt ttccagttac ccacaaccag gatgatatcg
    21061 cccagcagca gaggctcatc cgccagcgaa ccttccagcg ccacgccatt gcgctttagc
    21121 cccaccacat tcagtccgta gcgggtacga aaaccaattt cgcgcaccga tttaccaatc
    21181 agttctgact caggaattaa tgaaatctct gccatgccca catcaagggc ctggtcagaa
    21241 aaatactcgc cgcgcagtac catcggctcc agcaattgct cactacaaaa ttgccggaga
    21301 tcgacatcag ccgcagacat atcaataagc aaaacgtcac gcgcgcgaaa ctcagaaacc
    21361 ccattaacgt tcacgataac gcgacgaaaa cgccgccagc gttcaacacc gatgacgtta
    21421 gcgccataac gctcacgtaa tttgagatca tccagccgtt gaccaatcat tgccgatccg
    21481 gggcgaatag ccagacgtcg cgcacgcccg gtcagtcgat attcacggat aagatcgcga
    21541 aaggttcgac gcgtccagcc ttcgcgctgc ggggtctggg tatccccttt cagcatgaaa
    21601 cgcatcacta acatatacaa aatacccagc accagcacga ccaggccaac aggtgttacg
    21661 ctaaagaaac tgaagccgtg atagccttca cgcagcaatt cactgttgac taccaggttc
    21721 ggcggcgtcg ccaccagcgt catcatgccg ctaatcagcc cggcaaaact taacggcatc
    21781 atcagacgtg acggcgaagt ttgcatacgc atggcaacgc ttaacaccac gggaataaag
    21841 atagcgacaa cgccggttga actcataaac gcgccaagcc ccgcgacggt cagcatcaac
    21901 aaaaccaaca ttttgatttc actgttgccc gccactttga ccagccatgt tcccattacg
    21961 gtggcaacac cggtacggac caaaccatcg ccaataataa acaaggcggc aatcaggaca
    22021 acgttaggat cagaaaagcc ggaaaatact tcggggaccg tcagcgttcc gcttaatgca
    22081 aacgcgacaa taacaaacaa agcgaccgca tccatacgca ctctgcccgt cgcaaacaag
    22141 acgatggcaa cggccagtaa tgaaagaacc caaatcaatt caccgttcac aacttatcct
    22201 tgttaattga gagggatgac ttgattctgc cataaaaaag ccccgacgag acggggctaa
    22261 atcatgatca ggtgtttcac tgaataataa catcgccatt tagctgtttg gtcacagtaa
    22321 tttgctccag actgtggagg accaaatcga cctcattcag gcgcggggta tctgccggag
    22381 cgttaaccgc aatgacatgg caacccgccg ccaggccaga aagcacgcca gcgggagcat
    22441 cttccgccac cacacactcc tgcggcgcaa gccccagcag ctgcgcacct aacagatacg
    22501 catcaggttc tggttttccg cgcttcactc gctcagcggt tacaaacacc tctggtgcgg
    22561 gaagcccagc tattttatgg cgcgctcgcg ctaccggcat ggagccagaa gtcacaatgg
    22621 cccacggaat acctgcttta ttcaaatgat tgagtaaggc gattgccccc ggaagcgcgg
    22681 taataccttc gttttccgtg gcctcgatgt gctccagacg cgtaaactcg gcggcaatat
    22741 cagcctcgga tttgcccgcc ataaaatggc gcaaagaggt gatcgcctgt ttaccgtgaa
    22801 tgaaagccag cacctcttcc ggcgctaacc catgacgtct ggcccagttg ctccacgccc
    22861 gttctaccgc aggcagggaa tccaccagcg ttccatcaag atcaaacaga aaacctttgc
    22921 accgcacgcg ggcctcctca ggcgttgata atttgattaa tttcgttggc gctcaaatgg
    22981 tactgacgcg ggcaggcatg ccacacatta agcatgcgct gatatttttc ccacattggc
    23041 gtctgggcgt taaaaccatg agtcccagcg tcaaaatggg tatagcgccc ttccacatta
    23101 accataaagc ggacataacc gaggtaacgt gcttcagtgg cggcgtcaaa gccgaggaag
    23161 gtgacacgac gttcatcgat ggattgctgg tcctgcaaat tagaccagga aacatgcaac
    23221 gcatgataca tctccataat gtcgatgata gtgcggcagg tttcttcttt cagctcgcca
    23281 aactcgcgat ccaattcacg catctgtaat ccgtaaccac gctcaataat tgtttgcagg
    23341 cgacggtaac gttcagcatt tgccggatcg agcatagtca tcatcttgta ctgattagac
    23401 aaaataagac gttgcgcgtt ggtcatttcc attgttgact cctgtatcac tctactacgg
    23461 tgaaaaaaaa gaaggctgag tatgccttct tttatatgcg taatcagggg tcaattacaa
    23521 atcatcaagg aaagttttat ccagttgttt gaaggcgcgc ttaagcgtgt cagctaatgc
    23581 ctggtaatca ggcttgcctt caacgggtgc caacacctgt ccagactcct gcaatttacc
    23641 gcgaacttca taaaaccagt tgaggatagc agggggtaat ggcgttacag aacgcttgcc
    23701 cagccaccat aatccctgca tgggtaaact taaggcgaac agcgcagtgg caactgccgg
    23761 cccaagctga ccgcccaggg caatctgcca gcagagagta aatacggcga tcggcggcat
    23821 aaaacggatc gcataacgcg tcatcttgat aacgcgattt tcgacaaaga ccggggcaag
    23881 gcgtttttcc agcggccacg tctttgagta atgctgtccc cggcgaaaca agctaaaaaa
    23941 attaacagaa cgattatccg gcgttgacat gcttcacctc aacttcacat ataaagattc
    24001 aaaaatttgt gcaaattcac aactcagcgg gacaacattc aaaacatttt gtcttccata
    24061 cccactatca ggtatccttt agcagcctga aggcctaagt agtacatatt cattgagtcg
    24121 tcaaattcat atacattatg ccattggctg aaaattacgc aaaatggcat agactcaaga
    24181 tatttcttcc atcatgcaaa aaaaatttgc agtgcatgat gttaatcata aatgtcggtg
    24241 tcatcatgcg ctacgctcta tggctccctg acgttttttt agccacgtat caattatagg
    24301 tacttccatg tcgagtaagt tagtactggt tctgaactgc ggtagttctt cactgaaatt
    24361 tgccatcatc gatgcagtaa atggtgaaga gtacctttct ggtttagccg aatgtttcca
    24421 cctgcccgaa gcacgtatca aatggaaaat ggacggcaat aaacaggaag cggctttagg
    24481 tgcaggcgcc gctcacagcg aagcgctcaa ctttatcgtt aatactattc tggcacaaaa
    24541 accagaactg tctgcgcagc tgactgctat cggtcaccgt atcgtacacg gcggcgaaaa
    24601 gtataccagc tccgtagtga tcgatgagtc tgttattcag ggtatcaaag atgcagcttc
    24661 ttttgcaccg ctacacaacc cggctcacct gatcggtatc gaagaagctc tgaaatcttt
    24721 cccacagctg aaagacaaaa acgttgctgt atttgacacc gcgttccacc agactatgcc
    24781 ggaagagtct tacctctacg ccctgcctta caacctgtac aaagagcacg gcatccgtcg
    24841 ttacggcgcg cacggcacca gccacttcta tgtaacccag gaagcggcaa aaatgctgaa
    24901 caaaccggta gaagaactga acatcatcac ctgccacctg ggcaacggtg gttccgtttc
    24961 tgctatccgc aacggtaaat gcgttgacac ctctatgggc ctgaccccgc tggaaggtct
    25021 ggtcatgggt acccgttctg gtgatatcga tccggcgatc atcttccacc tgcacgacac
    25081 cctaggcatg agcgttgacg caatcaacaa actgctgacc aaagagtctg gcctgctggg
    25141 tctgaccgaa gtgaccagcg actgccgcta tgttgaagac aactacgcga cgaaagaaga
    25201 cgcgaagcgc gcaatggacg tttactgcca ccgcctggcg aaatacatcg gtgcctacac
    25261 tgcgctgatg gatggtcgtc tggacgctgt tgtattcact ggtggtatcg gtgaaaatgc
    25321 cgcgatggtt cgtgaactgt ctctgggcaa actgggcgtg ctgggctttg aagttgatca
    25381 tgaacgcaac ctggctgcac gtttcggcaa atctggtttc atcaacaaag aaggtacccg
    25441 tcctgcggtg gttatcccaa ccaacgaaga actggttatc gcgcaagacg cgagccgcct
    25501 gactgcctga tttcacaccg ccagctcagc tggcggtgct gttttgtaac ccgccaaatc
    25561 ggcggtaacg aaagaggata aaccgtgtcc cgtattatta tgctgatccc taccggaacc
    25621 agcgtcggtc tgaccagcgt cagccttggc gtgatccgtg caatggaacg caaaggcgtt
    25681 cgtctgagcg ttttcaaacc tatcgctcag ccgcgtaccg gtggcgatgc gcccgatcag
    25741 actacgacta tcgtgcgtgc gaactcttcc accacgacgg ccgctgaacc gctgaaaatg
    25801 agctacgttg aaggtctgct ttccagcaat cagaaagatg tgctgatgga agagatcgtc
    25861 gcaaactacc acgctaacac caaagacgct gaagtcgttc tggttgaagg tctggtcccg
    25921 acacgtaagc accagtttgc ccagtctctg aactacgaaa tcgctaaaac gctgaatgcg
    25981 gaaatcgtct tcgttatgtc tcagggcact gacaccccgg aacagctgaa agagcgtatc
    26041 gaactgaccc gcaacagctt cggcggtgcc aaaaacacca acatcaccgg cgttatcgtt
    26101 aacaaactga acgcaccggt tgatgaacag ggtcgtactc gcccggatct gtccgagatt
    26161 ttcgacgact cttccaaagc taaagtaaac aatgttgatc cggcgaagct gcaagaatcc
    26221 agcccgctgc cggttctcgg cgctgtgccg tggagctttg acctgatcgc gactcgtgcg
    26281 atcgatatgg ctcgccacct gaatgcgacc atcatcaacg aaggcgacat caatactcgc
    26341 cgcgttaaat ccgtcacttt ctgcgcacgc agcattccgc acatgctgga gcacttccgt
    26401 gccggttctc tgctggtgac ttccgcagac cgtcctgacg tgctggtcgc cgcttgcctg
    26461 gcagccatga acggcgtaga aatcggtgcc ctgctgctga ctggcggcta cgaaatggac
    26521 gcgcgcattt ctaaactgtg cgaacgtgct ttcgctaccg gcctgccggt atttatggtg
    26581 aacaccaaca cctggcagac ctctctgagc ctgcagagct tcaacctgga agttccggtt
    26641 gacgatcacg aacgtatcga gaaagttcag gaatacgttg ctaactacat caacgctgac
    26701 tggatcgaat ctctgactgc cacttctgag cgcagccgtc gtctgtctcc gcctgcgttc
    26761 cgttatcagc tgactgaact tgcgcgcaaa gcgggcaaac gtatcgtact gccggaaggt
    26821 gacgaaccgc gtaccgttaa agcagccgct atctgtgctg aacgtggtat cgcaacttgc
    26881 gtactgctgg gtaatccggc agagatcaac cgtgttgcag cgtctcaggg tgtagaactg
    26941 ggtgcaggga ttgaaatcgt tgatccagaa gtggttcgcg aaagctatgt tggtcgtctg
    27001 gtcgaactgc gtaagaacaa aggcatgacc gaaaccgttg cccgcgaaca gctggaagac
    27061 aacgtggtgc tcggtacgct gatgctggaa caggatgaag ttgatggtct ggtttccggt
    27121 gctgttcaca ctaccgcaaa caccatccgt ccgccgctgc agctgatcaa aactgcaccg
    27181 ggcagctccc tggtatcttc cgtgttcttc atgctgctgc cggaacaggt ttacgtttac
    27241 ggtgactgtg cgatcaaccc ggatccgacc gctgaacagc tggcagaaat cgcgattcag
    27301 tccgctgatt ccgctgcggc cttcggtatc gaaccgcgcg ttgctatgct ctcctactcc
    27361 accggtactt ctggtgcagg tagcgacgta gaaaaagttc gcgaagcaac tcgtctggcg
    27421 caggaaaaac gtcctgacct gatgatcgac ggtccgctgc agtacgacgc tgcggtaatg
    27481 gctgacgttg cgaaatccaa agcgccgaac tctccggttg caggtcgcgc taccgtgttt
    27541 atcttcccgg atctgaacac cggtaacacc acctacaaag cggtacagcg ttctgccgac
    27601 ctgatctcca tcgggccgat gctgcagggt atgcgcaagc cggttaacga cctgtcccgt
    27661 ggcgcactgg ttgacgatat cgtctacacc atcgcgctga ctgcgattca gtctgcacag
    27721 cagcagtaat ctcgtcatca tccgcagctt tgcgctgcgg atatctgaac cggaaataat
    27781 cactatttcc ggttttttat tctcttaatc tgcattaatc ctttctgatt atcttgctta
    27841 actgcgctgc atcaatgaat tgcgccattt cactttgcat acttaccact ttgttttgtg
    27901 caagggaata tttgcgctat gtccgcaatc actgaatcca aaccaacaag aagatgggca
    27961 atgcccgata cgttggtgat tatctttttt gttgctattt taaccagcct tgccacctgg
    28021 gtagttccgg tggggatgtt tgacagtcag gaagtgcagt atcaggttga tggtcaaaca
    28081 aaaacacgca aagtcgtaga tccacactca tttcgcattc tgactaacga agcaggcgaa
    28141 cctgagtatc accgcataca gctgttcacg acgggcgatg aacgcccggg cctgatgaac
    28201 ttcccgtttg aaggattaac ctcaggatcg aaatacggga cagctgttgg catcatcatg
    28261 tttatgcagg tgattggcgg cgcgtttggc attgtgatgc gtacaggaac cattgataac
    28321 ggtatcctgg cgcttattcg ccatacccgc gggaatgaaa ttctctttat tcctgcgctg
    28381 tttattctgt tttcacttgg cggcgcggta tttggtatgg gagaagaggc cgtcgccttt
    28441 gccattatca tcgcaccgct aatggtccgg ctgggctatg acagtattac caccgtcctg
    28501 gtgacctata ttgccacgca aatcggtttt gccagttcgt ggatgaaccc gttttgtgtg
    28561 gtcgttgctc aggggattgc cggcgttccg gtgctttctg gctccgggtt gcgcatcgtg
    28621 gtgtgggtta tcgccactat gattggcctg atctttacca tggtgtacgc ctcacgagtg
    28681 aaaaagaatc ctcttctgtc acgcgtgcat gagtccgacc gcttctttcg tgaaaagcag
    28741 gcggatgttg aacaacgtcc gtttaccttt ggtgactggc tggtattgat tgtcctgacc
    28801 gccgtaatgg tctgggtgat ttggggcgtg atcgttaatg cctggtttat tccagaaatt
    28861 gccagccagt tcttcaccat gggtctggtg attggcatca tcggcgttgt tttccgcctt
    28921 aacggcatga cggttaatac catggcttca tcctttaccg aaggggcgcg aatgatgatc
    28981 gcccctgccc tgctggtggg tttcgccaaa gggattttgc tgctggtcgg taatggtgaa
    29041 gcgggtgatg ccagcgtgtt aaataccatc ctcaacagca ttgccaatgc cattagcggt
    29101 ctggacaacg cggtcgcggc ctggtttatg ttgctcttcc aggcggtatt taatttcttc
    29161 gtgacgtccg gttctggtca ggcggcgtta accatgccgt tactggcacc gcttggcgat
    29221 ctggtcggtg ttaaccgtca ggttaccgtg ctggcattcc agtttggtga tggcttcagt
    29281 cacatcattt acccaacctc agcttcgtta atggcaactc tcggtgtgtg cagggtggac
    29341 ttccgtaact ggctgaaggt gggcgcgccc ctacttggac tgctgtttat tatgtccagc
    29401 gtcgtagtga tcggcgctca gttgatgggc taccactaaa aatgttaaga gccgcaattg
    29461 cggctctttt ttcattctgc cgtttcagtc tctacggctt catttttggc attgcgcttc
    29521 atccacaacg ccagcgcttt cagcgagtct ggagtgaact catcgcagcg tgcggtgatt
    29581 tcttccggcg tcagccagca aacttcactg acttcatctt cctgtagggc gaagggaccg
    29641 tgagagacgc agctgaacaa cgcgccccag acacggcaat ttttatcttc gaaatagaac
    29701 tgcccgtgct cggcaaaggg gacaccggca atgcccaact cttcttccgc ttcgcgacgc
    29761 gcggattcca gcagttgctc atcggcctga accacaccgc ctgcggtcgc atctaacatg
    29821 ccgggtaaaa agtcttttgt ctcggtacga cgctggacca gaattttgcc catgccatca
    29881 tgcacgacga tgtaagttgc acgatgacgc agacactgtg cccgcatttg ttcccggctg
    29941 gcttgtgcaa tgacttcgtt ctcttcattg acaatatcca cccattcagt acttgccaaa
    30001 cgacgctgtt ccattatcag gaaaccttct ttttctggcg ctcttacggc gcattttgag
    30061 ttgtgggtaa attacggatt aatcgcgacc tgcgcaatga tactttgatc attgagtgcg
    30121 attacactaa gtacgtcatt atccagcatg ccataactcg ccggattacc gcctttcgga
    30181 atactcaccg agccggggtt gaagtggaaa atctcccccc gctgttctgc cactggcaga
    30241 tgggtatgac cgtacaccag cacatcgttc tggtttaaag caggtagatt ttccgggcca
    30301 aaaagatgac catgcgtcaa aaacagacgt tgtttttcca gtaatacctg ttgccacggc
    30361 gcggttatcg ggaaatgcag cagcatttga tccacttcgc tgtcgcagtt gccgcgcaca
    30421 gcgataacct tatgtgccac ttcattaagc cgttcagcga ctttggctgg cgcgtaaccc
    30481 tccggtaaag cattacgcgg gccgtgattc aacacgtcgc caaggatcac cagccactgg
    30541 gcaccgcttt gggcaaacaa ctccagaaca cgttccgtcg ccggtaacga cccatgaatg
    30601 tccgatgcaa acatcagttt catcactcac tcctcgtcga aaaaacgtaa gttatgatac
    30661 tggattctgt cgttgctatc agccagattg cttcgccgaa agtgcaataa aacgctggac
    30721 agacgctcgc tgccactgga atgtcgcata atccaccagg cgttctggca cctcatcgcc
    30781 atgtagtacc aggcggttaa tcattagcgc cagatcagta tcagcaatgc accattcacc
    30841 aaataaattc ggctgaccca gtgctaacaa atgttctgcc atcgcgaaca gtttctctgc
    30901 actggctttt ccctcggccg ttagtggcgc ttttttcgcc cccgcaaaga caacatccgt
    30961 cggacgctct tcgcggatgg gcatcagatc gctgcgcagc caggcctgaa tctgtcgtgc
    31021 acgcgcacga ttttctaaat caagcggata aatacgttcc caggtcggtg gcgcaaatcg
    31081 atcttccaga tactccgcaa tggcagaaga ttcactcaac tcaaaatcat cgatttgtaa
    31141 taacggcaca cggcgtgtct gaccgtaacc ttgccacgtc ggctgcaaat gttcaccgct
    31201 gtcgaggtcg atggtcttga tatgaaacga caggcctttt tcctgcaacg ccacccaagc
    31261 ggataacaca taaggggaga aaaagtgggc atctgaccaa agcgtgatag cgggtttact
    31321 cattatgtcc tcggcaataa agggggctgg ctatcaaact atagagcctt tttgtcactg
    31381 tcacgtgacg aatactcacg taagtcgccg cgctttctat actggtggtg ttcagatgat
    31441 taaacaaccg gagctgcaat gatcgatctc tatttcgccc cgacacccaa tggtcacaaa
    31501 attacgctgt ttctcgaaga agcagagctt gattatcgct tgattaaggt agacctgggg
    31561 aaaggcggtc agtttcgtcc ggaatttttg cgcatttcgc ccaacaacaa aattccggca
    31621 attgttgatc attctcctgc cgatggcggc gaaccgctaa gcctctttga atctggtgcc
    31681 attttgttgt atctggctga gaaaacgggg ctctttttga gtcatgaaac gcgtgaacgc
    31741 gccgccacat tacagtggtt attctggcag gtaggcggac tggggccgat gcttgggcaa
    31801 aatcatcatt ttaatcacgc agccccccaa accattcctt acgctattga acgttatcag
    31861 gttgaaactc agcgtcttta ccatgtacta aacaagcggc tggaaaactc gccctagctg
    31921 ggaggcgaga actacagcat tgcggatatt gcctgctggc cgtgggttaa tgcctggact
    31981 cgccagcgaa ttgacctcgc aatgtatccg gcagtcaaga actggcatga gcggatccgt
    32041 tcgcgccctg ccaccgggca ggcactgcta aaagcacaac tcggtgatga gcgttcggat
    32101 agttaacaga aacaggttct cgtgtattat ttcatcctaa gtaaaacaac ggagaacctg
    32161 caatggcaca acctgccgct attattcgta taaagaacct tcgtttacgt acgtttatcg
    32221 gaattaagga agaagaaatt aacaaccgtc aggatattgt tatcaatgtg acgatccact
    32281 accccgccga taaagcgcgc actagcgaag atatcaacga tgcgctgaat tatcgcaccg
    32341 taacgaaaaa cattattcag catgtagaga ataaccgttt ctctttgttg gaaaaattaa
    32401 ctcaggatgt gctcgatatc gcacgtgaac atcactgggt gacgtatgct gaagtggaga
    32461 tcgataaact gcacgcgctg cgctacgccg attcggtatc catgacctta agctggcagc
    32521 gttaaccgcc atatcgggag gctgcatgaa catagtgatc accggaggga cgggattaat
    32581 tggtcgccat ttgattccgc gtttgctgga gctgggccat caaatcacgg tagtgacgcg
    32641 taacccacag aaagccagtt ccgttctcgg ccctcgggtg acgctatggc aagggctagc
    32701 cgatcaaagc aacctcaacg gcgttgatgc ggtaatcaac ctggccggag aaccgattgc
    32761 tgataaacgc tggactcacg agcaaaaaga gcgtctctgc caaagccgct ggaatatcac
    32821 gcaaaaactg gtcgatttga ttaatgccag cgacacgccg ccgtcggtac tcatttccgg
    32881 ctcggcaacg ggctattatg gcgacttagg tgaagtggtg gttaccgaag aggaaccgcc
    32941 gcataacgaa tttactcata aactctgcgc ccgctgggaa gagattgcct gccgggcgca
    33001 aagtgacaaa acgcgagtgt gcctgctgcg aaccggcgtg ctactggcac cggacggcgg
    33061 tattctcggt aaaatgctgc caccgtttcg tcttggcctg ggcgggccga ttgactctgg
    33121 tcggcagtat ctggcctgga ttcatattga tgatatggtc aacggtattc tctggctgct
    33181 ggataacgag ctgcgcgggc catttaatat ggtttcgccc tccccggtac gcaatgaaca
    33241 atttgcccat gcgctcggtc acgcgctgca tcgcccggcc attttgcgcg tccccgcgac
    33301 cgccattcga ctgttaatgg gcgaatcttc agtactggta ttaggtggac aacgcgcgat
    33361 gcctaaacgg ctggaagaag cgggttttgc gtttcgctgg tacgatttag aagaggcgct
    33421 ggcagatgtc gttcgctgat gtggtttaca gcaaacatcc gccagttaac tcccggtgtt
    33481 acaggattag tggctttgcg cgataagatc gtctggtgaa agtcgggtca ccatcataac
    33541 taactctctg tctaaacctc tatccagcat ctcctgagca atacgcaggg cttcttcgtg
    33601 tttgccctgc attgcgcctt cttcacgtaa tctgtcagca atggtcatca gtttctcctt
    33661 ttcttgtggt gcgcgttccg ctatctcacc aataaatgca cgaaaacgct gggcatcccc
    33721 tgtttgtaat acgtaattaa acagggcttt tagctgtctg tcattagtgt tccctgtaac
    33781 tagcagcgaa acaatttggt cgactaatcc caacagatcg cgctgacgaa tatgtttctg
    33841 aattaactcc aacagcgcca ttttgcggtg ttgcataatc tcgtcatccg gcaccacggt
    33901 aatatccacc aacggaaacg ctgatgaata tattttgcgg gctatagcag gctcggcaaa
    33961 ttcatcaagc cagcagagtg aataaggata aggacttctg caaccatgat aaaacagcat
    34021 cgggatcacc aatggaagct ctttatagcc cg
//
LOCUS       DADMHM010000023        33544 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.024, whole genome shotgun sequence.
ACCESSION   DADMHM010000023 DADMHM010000000
VERSION     DADMHM010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 33544)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 33544)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..33544
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.024"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            1266..2045
                     /gene="ipaJ"
                     /locus_tag="JN125_000929"
     CDS             1266..2045
                     /gene="ipaJ"
                     /locus_tag="JN125_000929"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858255.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector cysteine
                     protease IpaJ"
                     /protein_id="HAY8870787.1"
                     /translation="MSEQRKPCKRGCIHTGVMLYGVLLQGAIPREYMISHQTDVRVNE
                     NRVNEQGCFLARKQMYDNSCGAASLLCAAKELGVDKIPQYKGSMSEMTRKSSLDLDNR
                     CERDLYLITSGNYNPRIHKDNIADAGYSMPDKIVMATRLLGLNAYVVEESNIFSQVIS
                     FIYPDARDLLIGMGCNIVHQRDVLSSNQRVLEAVAVSFIGVPVGLHWVLCRPDGSYMD
                     PAVGENYSCFSTMELGARRSNSNFIGYTKIGISIVITNEAL"
     gene            complement(2991..3920)
                     /locus_tag="JN125_000930"
     CDS             complement(2991..3920)
                     /locus_tag="JN125_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Virulence regulon transcriptional activator
                     VirB"
                     /protein_id="HAY8870788.1"
                     /translation="MVDLCNDLLSIKEGQKKEFTLHSGNKVSFIKAKIPHKRIQDLTF
                     VNQKTNVRDQESLTEESLADIIKTIKLQQFFPVIGREIDGRIEILDGTRRRASAIYAG
                     ADLEVLYSKEYISTLDARKLANDIQTAKEHSIRELGIGLNFLKVSGMSYKDIAKKENL
                     SRAKVTRAFQAASVPQEIISLFPIASELNFNDYKILFNYYKGLEKANESLSSTLPILK
                     EEIKDLDTNLPPDIYKKEILNIIKKSKNRKQNPSLKVDSLFISKDKRTYIKRKENKTN
                     RTLIFTLSKINKTVQREIDEAIRDIISRHLSSS"
     gene            complement(4137..4373)
                     /locus_tag="JN125_000931"
     CDS             complement(4137..4373)
                     /locus_tag="JN125_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HAY8870789.1"
                     /translation="MIKEKILSIVAFCYGIAYSKLSEETKFIEDLSADSLSLIEMLDM
                     ISFEFNLRIDESALEHIITIGDLISVVKNSTKSI"
     gene            complement(4377..6278)
                     /gene="ipaA"
                     /locus_tag="JN125_000932"
     CDS             complement(4377..6278)
                     /gene="ipaA"
                     /locus_tag="JN125_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector invasin IpaA"
                     /protein_id="HAY8870790.1"
                     /translation="MHNVNNTQAPTFLYKATSPSSTEYSELKSKISDIHSSQTSLKTP
                     ASVSEKENFATSFNQKCLDFLFSSSGKEDVLRSIYSNSMNAYAKSEILEFSNVLYSLV
                     HQNGLNFENEKGLQKIVAQYSELIIKDKLSQDSAFGPWSAKNKKLHQLRQNIEHRLAL
                     LAQQHTSGEALSLGQKLLNTEVSSFIKNNILAELKLSNETVSSLKLDDLVDAQAKLAF
                     DSLRNQRKNTIDSKGFGIGKLSRDLNTVAVFPELLRKVLNDILEDIKDSHPIQDGLPT
                     PPEDMPDGGPTPGANEKTSQPVIHYHINNDNRTYDNRVFDNRVYDNSYHENPENDAQS
                     PTSQTNDLLSRNGNSLLNPQRALVQKVTSVLPHSISDTVQTFANNSALEKVFNHTPDN
                     SDGIGSDLLTTSSQERSTNNSLSRGHRPLNIQNSSTTPPLHPEGVTSSNDNSSDTTKS
                     SASLSHRVASQINKFNSNTDSKVLQTDFLSRNGDTYLTRETIFEASKKVTNSLSNLIS
                     LIGTKSGTQERELQEKSKDITKSTTEHRINNKLKVTDANTINYVTETNADTIDKNHAI
                     YEKAKEVSSALSKVLSKIDDTSAELLTDDISDLKNNNDITAENNNIYKAAKDVTTSLS
                     KVLKNINKD"
     gene            complement(6287..7285)
                     /gene="ipaD"
                     /locus_tag="JN125_000933"
     CDS             complement(6287..7285)
                     /gene="ipaD"
                     /locus_tag="JN125_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system needle tip complex
                     protein IpaD"
                     /protein_id="HAY8870791.1"
                     /translation="MNITTLTNSISTSSFSPNNTNGSSTETVNSDIKTTTSSHPVSSL
                     TMLNDTLHNIRTTNQALKKDLSQKTLTKTSLEEIALHSSQISMDVNKSAQLLDILSKK
                     EYPINKDARELLHSAPKEAELDGYEMISHRELWDKIAKSINNINEQYLKVYEHAVSSY
                     TQMYQDFSAVLSSLAGWISPGGNDGNSVKLQVKSLKDELTKLKEKYKDKPLYPANNTV
                     SKEQANKWLTELGGTIGEVSEKNGGYVVNINMTPIDNMLKSLDNLGGNGEVVLDNAKY
                     QAWNAGFSAEDETMKNNLQTLVQKYSNANSIFDNLVKVLSSTISSCTDTDKLFLHF"
     gene            complement(7336..8427)
                     /gene="ipaC"
                     /locus_tag="JN125_000934"
     CDS             complement(7336..8427)
                     /gene="ipaC"
                     /locus_tag="JN125_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858260.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS translocon subunit IpaC"
                     /protein_id="HAY8870792.1"
                     /translation="MEIQNTKSASILYTDISTKQTQSSSETQKSQNYQQLAAHIPLNV
                     GKNPVLTTTLNDDQLLKLSEQVQHDSEIIARLTDKKMKDLSEMSHTITPENTLDISSL
                     SSNAVSLIISVAVLLSALRTAETRLGSQLSLIAFDATKSAAENIVRQGLAALSSSITG
                     AVTQVGITGIGAKKTHSGISEQKGALRKNLATAQSLEKELAGSKLGLNKQIDTNITSP
                     QTNSSTKILGKNKLAPDNISLSTEHKTSLSSPDISLQDKIDTQRRAYELNTLSAQQKQ
                     NIGRATMETSAVAGNISTSGGRYTSALEEEEQLISQASSKQAEEASQVSKEASQATNQ
                     LIQKLLNIIDNINQSRNSTASQIAGNIRA"
     gene            complement(8447..10189)
                     /gene="ipaB"
                     /locus_tag="JN125_000935"
     CDS             complement(8447..10189)
                     /gene="ipaB"
                     /locus_tag="JN125_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system translocon subunit
                     IpaB"
                     /protein_id="HAY8870793.1"
                     /translation="MHNVSTTTTGLPLAKILASTELGDNTIQAANDAANKLFSLTIAD
                     LTANKNINTTNAHSTSNILIPELKAPKSLNASSQLTLLIGNLIQILGEKSLTALTNKI
                     TAWKSQQQARQQKNLEFSDKINTLLSETEGLTRDYEKQINKLKNADSKIKDLENKINQ
                     IQTRLSELDPDSPENKKLRREEIQLTIKKDAAVKDRTLIEQKTLSIHSKLTDKSMQLE
                     KEIDSFSAFSNTASAEQLSTQQKSLTGLASVTQLMATFIQLVGKNNEESLKNDLALFQ
                     SLQESRKTEMERKSDEYAAEVRKAEELNRVMGCVGKILGALLTIVSVVAAAFSGGASL
                     ALAAVGLALMVTDAIVQAATGNSFMEQALNPIMKAVIEPLIKLLSDAFTKMLEGLGVD
                     SKKAKMIGSILGAIAGALVLVAAVVLVATVGKQAAAKLAENIGKIIGKTLTDLIPKFL
                     KNFSSQLDDLITNAVARLNKFLGAAGDEVISKQIISTHLNQAVLLGESVNSATQAGGN
                     VASAVFQNNASKNLADLTLSKYQVEQLSKYIGDAIEKFGQLQEVIAELLASMSNSQAN
                     RTDVAKAILQQTTA"
     gene            complement(10195..10662)
                     /gene="ipgC"
                     /locus_tag="JN125_000936"
     CDS             complement(10195..10662)
                     /gene="ipgC"
                     /locus_tag="JN125_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system translocator chaperone
                     IpgC"
                     /protein_id="HAY8870794.1"
                     /translation="MSLNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAY
                     DFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN
                     DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEKLKIKAQSYLDAIQDIKE"
     gene            complement(10720..11346)
                     /gene="ipgB"
                     /locus_tag="JN125_000937"
     CDS             complement(10720..11346)
                     /gene="ipgB"
                     /locus_tag="JN125_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein IpgB"
                     /protein_id="HAY8870795.1"
                     /translation="MQILNKILPQVEFAIPRPSFDSLSHNKLVKKILSVFNLKQRFPQ
                     KNFGCPVNINKIRDSVIDKIKDSNSGNQLFCWMSQERTSYVSSMINRSIDEMAIHNGV
                     VLTSDNKKNIFAAIEKKFPDIKLDEKSAQTSISHTALNEIASSGLRAKILKRYSSDMD
                     LFNTQMKDLTNLVSSSVYDKIFNESTKVLQIEISAEVLKAVYRQSNTN"
     gene            complement(11362..11751)
                     /gene="ipgA"
                     /locus_tag="JN125_000938"
     CDS             complement(11362..11751)
                     /gene="ipgA"
                     /locus_tag="JN125_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system chaperone IpgA"
                     /protein_id="HAY8870796.1"
                     /translation="MCRKLYDKLYEITGAKLDFNDKNQAFILLEEQIPVCITDNDEYI
                     FLTGLLNEHELFTENIINPEHILILNYSLSRDYGSSICLLPDTHQCVLTKKHYKKYLS
                     PDELIESLYEFLFCIKLTIANITSEVN"
     gene            complement(11764..13248)
                     /gene="icsB"
                     /locus_tag="JN125_000939"
     CDS             complement(11764..13248)
                     /gene="icsB"
                     /locus_tag="JN125_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector IcsB"
                     /protein_id="HAY8870797.1"
                     /translation="MILKISNFIDASNTKGPIRVEDTEHGPILVAQKFNLKDLFFRTL
                     STINAKINSQILNEQLKNYRLANQKSLLLFLKTLASEKSAESAFAAYEAVKNSIQHSF
                     TGKDIKLMLNTAESFHGIGTAKNLERHLVFRCWGNRGITHLGHTSISIKNNLLQEPTH
                     TYLSWYPGGNVTKDTEINYLFEKRSGYSVDTYKQDKLNMISDQTAERLDAGQEVRNLL
                     NSKQDQNNNKKIFFPRANQKKDPYGYWGVSADKVYIPLSGDNKTKDGKISYNLFGLDE
                     TNMSKFICQKKADAFRQLANYKLISKSENCAGMALNVLKAGNSEIYFPLPDVKLVATP
                     NNVYAYANKVRQRIESLNQSYNEIMKYIESDFDLSRLTQLRRSYLKSFNKINLIHTPK
                     TFKPLSISLYKHPTENVSSEDFDAVINACHSYLVKSAPSNMSRVLNELKIGATDKKEE
                     IIEKSIKTIDYYNSLKSPDLGTKLYIHDLLQVNKLLLNNSHSNI"
     gene            13562..15178
                     /locus_tag="JN125_000940"
     CDS             13562..15178
                     /locus_tag="JN125_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector inositol
                     phosphate phosphatase"
                     /protein_id="HAY8870798.1"
                     /translation="MHITNLGLHQVSFQSGDSYKGAEETGNQKGVSVISYQRVKNGER
                     NKGVEALNRLYLQNQTSLTGKGLLFARDRAAVFYEAIKLAGGDTSKIKAMMEQLDTYK
                     LGEVDKRNINELNKVISEEIGAQLGIKNKKELQSEIKQIFTNYLNNKNWEPINKNINY
                     HGKNYGFQLTPASHMKIGNKNIFVKEYNGKGICCASTRESEHIANMWLSKVVDDEGKE
                     IFSGIRHGVISAYGLKKNSSERAVAARNKAEELASAALYSRQELLSQALSGKTVDLKI
                     VSTSLLTPTSLTGGEESMLKDQVKALKGLNSKRGEPTKLLIRNSDGLLQEVKVNLKVV
                     TFNFGVNELALKMGLGWRNVDKLNGESICSLLGDNFLKNGVIGGWAAEAIEKNPPCKN
                     DVIYLANQIKEIVNKKLQKNDNGEPYKLSQRMALLAYTIGAVPCWNCKSGKDRTGMQD
                     AEIKREIIRKHETGQFSQLNSKLSSEEKRLFSTILMNSGNMEIQEMNTGVPGNKVMKK
                     LPLSSLELSYAERIGDPKIWNMVKGYSSFV"
     gene            15188..15550
                     /gene="ipgE"
                     /locus_tag="JN125_000941"
     CDS             15188..15550
                     /gene="ipgE"
                     /locus_tag="JN125_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system chaperone IpgE"
                     /protein_id="HAY8870799.1"
                     /translation="MEDLADVICRALGIPSIDTDDQAIMLDDDVLIYIEKEGDSINLL
                     CPFCALPENINDLIYALSLNYSEKICLATDDEGGSLIARLDLTGINEFEDIYVNTEYY
                     ISRVRWLKDEFARRMKGY"
     gene            15550..16008
                     /gene="ipgF"
                     /locus_tag="JN125_000942"
     CDS             15550..16008
                     /gene="ipgF"
                     /locus_tag="JN125_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein IpgF"
                     /protein_id="HAY8870800.1"
                     /translation="MSRFVFIFLCFIPYLGRADCWDKAGERYNIPSSLLKAIAEKESG
                     FNKFAVNVNNNGSKDYGIMQINDFHSKRLREMGYTEEMLISHPCLSVHYAAKLLNEFM
                     LMYGRGWEAVGAYNAGTSPKKKKERLKYAEDIYKRYLRIAAESKQNNRRI"
     gene            16017..17132
                     /gene="mxiG"
                     /locus_tag="JN125_000943"
     CDS             16017..17132
                     /gene="mxiG"
                     /locus_tag="JN125_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system protein MxiG"
                     /protein_id="HAY8870801.1"
                     /translation="MSEAKNSNLAPFRLLVKLTNGVGDEFPLYYGNNLIVLGRTIETL
                     EFGNDNFPENIIPVTDSKSDGIIYLAISKDNICQFSDEKGEQIDINSQFNSFEYDGVS
                     FQLKNMMEDKSRVHILNGMYNKPSVFFFFAVIVVLIIIFSLSLKKDEVKEIAEIIDDK
                     RYGIVNTEQCNYILAETQNDAVWASVALNKTGFTKCRYILVSNKEINRIQQYINQRFP
                     YINLYVLNLVSDKAELLVFLSKERNSSKDTELEKLKNALIVEFPYIKNIKFNYLSDHN
                     AREDAKGIFTKVNVQYKEICETNKVTYSVREELTDEKLELINRLISDYKNVYGDQYIE
                     FSVLLIDDDFKGKSYLNSKDSYVMLNDKHWFFLDKNK"
     gene            17140..17391
                     /locus_tag="JN125_000944"
     CDS             17140..17391
                     /locus_tag="JN125_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EscF/YscF/HrpA family type III secretion system
                     needle major subunit"
                     /protein_id="HAY8870802.1"
                     /translation="MSVTVPNKDWTLSSLSETFDDGTQTLQRQLTSALNALAQNPSNP
                     QLLAEYQSKLSEYTLYRNAQSNTVKVIKDVDAAIIQNFR"
     gene            17404..17697
                     /gene="mxiI"
                     /locus_tag="JN125_000945"
     CDS             17404..17697
                     /gene="mxiI"
                     /locus_tag="JN125_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system inner rod protein
                     MxiI"
                     /protein_id="HAY8870803.1"
                     /translation="MNYIYPVNQVDIIKASDFQSQEISSLEDVVSAKYSDIKMDTDIQ
                     VSQIMEMVSNPESLNPESLAKLQTTLSNYSIGVSLAGTLARKTVSAVETLLKS"
     gene            17703..18428
                     /locus_tag="JN125_000946"
     CDS             17703..18428
                     /locus_tag="JN125_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EscJ/YscJ/HrcJ family type III secretion inner
                     membrane ring protein"
                     /protein_id="HAY8870804.1"
                     /translation="MIRYKGFILFLLLMLIGCEQREELISNLSQRQANEIISVLERHN
                     ITARKVDGGKQGISVQVEKGTFASAVDLMRMYDLPNPERVDISQMFPTDSLVSSPRAE
                     KARLYSAIEQRLEQSLVSIGGVISAKIHVSYDLEEKNISSKPMHISVIAIYDSPKESE
                     LLVSNIKRFLKNTFSDVKYENISVILTPKEEYVYTNVQPVKEIKSEFLTNEVIYVFLG
                     MAVLVVILLVWAFKTGWFKRNKI"
     gene            18425..18952
                     /locus_tag="JN125_000947"
     CDS             18425..18952
                     /locus_tag="JN125_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion apparatus protein OrgA/MxiK"
                     /protein_id="HAY8870805.1"
                     /translation="MIRMDGIYKKYLSIIFDPAFYINRNRLNLPSELLENGVIRSEIN
                     NLIINKYDLNCDIEPLSGVTAMFVANWNLLPAVAYFIGSQESRLINHSEMVISYYGGK
                     ISKQGEAAIRSGFWHLIAWKENISVGIYERINLLFNPIALEGNYTPVERNLSRLNEGM
                     QYAKRHFTGIQTSCL"
     gene            18894..19589
                     /locus_tag="JN125_000948"
     CDS             18894..19589
                     /locus_tag="JN125_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858274.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MxiN"
                     /protein_id="HAY8870806.1"
                     /translation="MKVCNMQKGTLPVSRHHAYDGVVIKRIEKELCKTIKDRDTESKK
                     KAICIIKDATKKAESLRIDAVCDGYQIGIQTAFEHIIDYICEWKLKQNENRRNIEDYI
                     TSLLSENLHDERIISTLLEQWLSSLRNTVTELKVVLPKCNLALRKKLELDLHKYRSDV
                     KIILKYSEGNNYIFCSGNQVVEFSPQDVISGVKIELAEKLTKNDKKYFKELAHEKLRQ
                     IAEDLLKENPVND"
     gene            19582..19989
                     /locus_tag="JN125_000949"
     CDS             19582..19989
                     /locus_tag="JN125_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mxi-Spa secretion machinery protein MxiL"
                     /protein_id="HAY8870807.1"
                     /translation="MINQINASNALQQRLNSEEFVNLNERLSSSQSFDEDIIYEIMQY
                     FSQSELNSIDNDELHNKIEQLFNSRFPYLTAAQKSSLLNKLIDANQYVDLHEGFYASL
                     SIYNNIDFYIKTTTFDSLISVFEAGREADDSTW"
     gene            19973..20401
                     /gene="mxiM"
                     /locus_tag="JN125_000950"
     CDS             19973..20401
                     /gene="mxiM"
                     /locus_tag="JN125_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858276.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system pilotin MxiM"
                     /protein_id="HAY8870808.1"
                     /translation="MIRHGSNKLKIFILSILLLTLSGCALKSSSNSEKEWHIVPVSKD
                     YFSIPNDLLWSFNTTNKSINVYSKCISGKAVYSFNAGKFMGNFNVKEVDGCFMDAQKI
                     AIDKLFSMLKDGVVLKGNKINDTILIEKDGEVKLKLIRGI"
     gene            20531..21163
                     /gene="mxiE"
                     /locus_tag="JN125_000951"
     CDS             20531..21163
                     /gene="mxiE"
                     /locus_tag="JN125_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional activator MxiE"
                     /protein_id="HAY8870809.1"
                     /translation="MEGFFFVRNQNIKFSDNVNYHYRFNINSCAKFLAFWDYFSGALV
                     EHSHAEKCIHFYHENDLRDSCNTESMLDKLMLRFIFSSDQNVSNALAMIRMTESYHLV
                     LYLLRTIEKEKEVRIKSLTEHYGVSEAYFRSLCRKALGAKVKEQLNTWRLVNGLLDVF
                     LHNQTITSAAMNNGYASTSHFSNEIKTRLGFSARELSNITFLVKKINEKI"
     gene            21150..22850
                     /gene="mxiD"
                     /locus_tag="JN125_000952"
     CDS             21150..22850
                     /gene="mxiD"
                     /locus_tag="JN125_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system secretin MxiD"
                     /protein_id="HAY8870810.1"
                     /translation="MKKFNIKSLTLLIVLLPLIVNANNIDSHLLEQNDIAKYVAQSDT
                     VGSFFERFSALLNYPIVVSKQAAKKRISGEFDLSNPEEMLEKMTLLVGLIWYKDGNAL
                     YIYDSGELISKVILLENISLNYLIQYLKDANLYDHRYPIRGNISDKTFYISGPPALVE
                     LVANTATLLDKQVSSIGTDKVNFGVIKLKNTFVSDRTYNMRGEDIVIPGVATVVERLL
                     NNGKALSNRQAKNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIAYPETNSIL
                     VKGNDQQIQIIRDIITQLDVAKRHIELSLWIIDIDKSELNNLGVNWQGTASFGDSFGA
                     SFNMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVS
                     LVGERNSSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLP
                     EVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTSNISN
                     IVRVFLIQPREIKESSYYNTAEYKSLISEREIQKTTQIIPSETTLLEDEKSLVSYLNY
                     "
     gene            22869..23936
                     /gene="mxiC"
                     /locus_tag="JN125_000953"
     CDS             22869..23936
                     /gene="mxiC"
                     /locus_tag="JN125_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system gatekeeper subunit
                     MxiC"
                     /protein_id="HAY8870811.1"
                     /translation="MLDVKNTGVFSSAFIDKLNAMTNSDDGDETADAELDSGLANSKY
                     IDSSDEMASALSSFINRRDLEKLKGTNSDSQERILDGEEDEINHKIFDLKRTLKDNLP
                     LDQDFIDRLKRYFKDPSDQVLALRELLNEKDLTAEQVESLTKIINEIISGSEKSVNAG
                     INSAIQAKLFGNKMKLEPQLLRACYRGFIMGNISTTDQYIEWLGNFGFNHRHTIVNFV
                     EQSLIVDMDSEKPSCNAYEFGFVLSKLIAIKMIRTSDVIFMKKLESSSLLKDGSLSAE
                     QLLLTLLYIFQYPSESEQILTSVIDVSRASHEDSVVYQTYLSSVNESPHDIFKSESER
                     EIAINILRELVTSAYKKELSR"
     gene            23949..26009
                     /gene="mxiA"
                     /locus_tag="JN125_000954"
                     /gene_synonym="virH"
     CDS             23949..26009
                     /gene="mxiA"
                     /locus_tag="JN125_000954"
                     /gene_synonym="virH"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system protein MxiA"
                     /protein_id="HAY8870812.1"
                     /translation="MIQSFLKQVSTKPELIILVLMVMIIAMLIIPLPTYLVDFLIGLN
                     IVLAILVFMGSFYIERILSFSTFPSVLLITTLFRLALSISTSRLILVDADAGKIITTF
                     GQFVIGDSLAVGFVIFSIVTVVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLK
                     AGIIDAAGAKERRSILERESQLYGSFDGAMKFIKGDAIAGIIIIFVNLIGGISVGMSQ
                     HGMSLSGALSTYTILTIGDGLVSQIPALLISISAGFIVTRVNGDSDNMGRNIMSQIFG
                     NPFVLIVTSALALAIGMLPGFPFFVFFLIAVTLTALFYYKKVVEKEKSLSESDSSGYT
                     GTFDIDNSNDSSLAMIENLDAISSETVPLILLFAENKISANDMEGLIERIRSQFFIDY
                     GVRLPTILYRTSNELKVDDIVLLINEVRADSFNIYFDKVCITDENGDIDALGIPVVST
                     SYNERVISWVDVSYTENLTNIDAKIKSAQDEFYHQLSQALLNNINEIFGIQETKNMLD
                     QFENRYPDLLKEVFRHVTIQRISEVLQRLLGENISVRNLKLIMESLALWAPREKDVIT
                     LVEHVRASLSRYICSKIAVSGEIKVVMLSGYIEDAIRKGIRQTSGGSFLNMDIEVSDE
                     VMETLAHALRELRNAKKNFVLLVSVDIRRFVKRLIDNRFKSILVISYAEIDEAYTINV
                     LKTI"
     gene            26022..26423
                     /gene="spaK"
                     /locus_tag="JN125_000955"
     CDS             26022..26423
                     /gene="spaK"
                     /locus_tag="JN125_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system chaperone SpaK"
                     /protein_id="HAY8870813.1"
                     /translation="MSNINLVQLVRDSLFTIGCPPSIITDLDSHSAITISLDSMPAIN
                     IALVNEQVMLWANFDAPSDVKLQSSAYNILNLMLMNFSYSINELVELHRSDEYLQLRV
                     VIKDDYVHDGIVFAEILHEFYQRMEILNEVL"
     gene            26427..27719
                     /locus_tag="JN125_000956"
     CDS             26427..27719
                     /locus_tag="JN125_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FliI/YscN family ATPase"
                     /protein_id="HAY8870814.1"
                     /translation="MSYIKLLTQLSFPNRISGPILETSLSDVSIGEICNIQAGIESNE
                     IIARAQVVGFHDEKTILSLIGNSRGLSRQTLIKPTAQFLHTQVGRGLLGAVVNPLGEV
                     TDKFAVTDNSEILYRPVDNAPPLYSERAAIEKPFLTGVKVIDSLLTCGEGQRMGIFAS
                     AGCGKTFLMNMLIEHSSADIYVIGLIGERGREVTETVDYLKNSEKKSRCVLVYATSDY
                     SSVDRCNAAYIATAIAEFFRTEGHKVALFIDSLTRYARALRDVALAAGESPARRGYPV
                     SVFDSLPRLLERPGKLKAGGSITAFYTVLLEDDDFADPLAEEVRSILDGHIYLSRNLA
                     QKGQFPAIDSLKSISRVFTQVVDEKHRIMAAAFRELLSEIEELRTIIDFGEYKPGENA
                     SQDKIYNKISVVESFLKQDYRLGFTYEQTMELIGETIR"
     gene            27812..28150
                     /gene="spaM"
                     /locus_tag="JN125_000957"
     CDS             27812..28150
                     /gene="spaM"
                     /locus_tag="JN125_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="surface presentation of antigens protein SpaM"
                     /protein_id="HAY8870815.1"
                     /translation="MEALDKRIIYFLQLENDLEPIGAQSVSQLFNTRRKIAIVKKHII
                     QYQSERILLKGRIEEIQKDIDEANASKRKLLHKESKICKRIGLIKRNNFAKQLILDEL
                     SQEDMKYGIR"
     gene            28137..29015
                     /gene="spa32"
                     /locus_tag="JN125_000958"
     CDS             28137..29015
                     /gene="spa32"
                     /locus_tag="JN125_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system needle length
                     regulator Spa32"
                     /protein_id="HAY8870816.1"
                     /translation="MALDNINLNFSSDKQIEKCEKLSSIDNIDSLVLKKKRKVEIPEY
                     SLIASNYFTIDKHFEHKHDKGEIYSGIKNAFELRNERATYSDIPESMAIKENILIPDQ
                     DIKAREKINIGDMRGIFSYNKSGNADKNFERSHTSSVNPDNLLESDNRNGQIGLKNHS
                     LSIDKNIADIISLLNGSVAKSFELPVMNKNTADITPSMSLQEKSIVENDKNVFQKNSE
                     MTYHFKQWGAGHSVSISVESGSFVLKPSDQFVGNKLDLILKQDAEGNYRFDSSQHNKG
                     NKNNSTGYNEQSEEEC"
     gene            29009..29890
                     /gene="spaO"
                     /locus_tag="JN125_000959"
     CDS             29009..29890
                     /gene="spaO"
                     /locus_tag="JN125_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000944309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system protein SpaO"
                     /protein_id="HAY8870817.1"
                     /translation="MLRIKHFDANEKLQILYAKQLCERFSIQTFKNKFTGSESLVTLI
                     SLCGDWVIRIDTLSFLKKKYEVFSGFSTQESLLHLSKCVFIESSSVFSIPELSDKITF
                     RITNEIQYATTGSHLCCFSSSLGIIYFDKMPVLRNQVSLDLLHHLLEFCLGSSNVRLA
                     TLKRIRTGDIIIVQKLYNLLLCNQVIIGDYIVNDNNEAKINLSESNGESDHTEVSLAL
                     FNYDDINVKVDFILLEKKMTINELKMYVENELFKFPDDIVKHVNIKVNGSLVGHGELV
                     SIEDGYGIEISSWMVKE"
     gene            29895..30545
                     /gene="spaP"
                     /locus_tag="JN125_000960"
     CDS             29895..30545
                     /gene="spaP"
                     /locus_tag="JN125_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     protein SpaP"
                     /protein_id="HAY8870818.1"
                     /translation="MLSDMSLIATLSFFTLLPFLVAAGTCYIKFSIVFVMVRNALGLQ
                     QVPSNMTLNGIALIMALFVMKPIIEAGYENYLNGPQKFDTISDIVRFSDSGLIEYKQY
                     LKKHTDLELARFFQRSEEENADLKSAENNDYSLFSLLPAYALSEIKDAFKIGFYLYLP
                     FIVVDLVISSILLALGMMMMSPITISVPIKLVLFVALDGWGILSKALIEQYINVPA"
     gene            30560..30820
                     /gene="spaQ"
                     /locus_tag="JN125_000961"
     CDS             30560..30820
                     /gene="spaQ"
                     /locus_tag="JN125_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     protein SpaQ"
                     /protein_id="HAY8870819.1"
                     /translation="MSDIVYMGNKALYLILIFSLWPVGIATVIGLTIGLLQTVTQLQE
                     QTLPFGIKLIGVSISLLLLSGWYGEVLLSFCHEIMFLIKSGV"
     gene            30820..31590
                     /gene="spaR"
                     /locus_tag="JN125_000962"
     CDS             30820..31590
                     /gene="spaR"
                     /locus_tag="JN125_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858288.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     protein SpaR"
                     /protein_id="HAY8870820.1"
                     /translation="MDISSWFESIHVFLILLNGVFFRLAPLFFFLPFLNNGIISPSIR
                     IPVIFLVASGLITSGKVDIGSSVFEHVYFLMFKEIIVGLLLSFCLSLPFWIFHAVGSI
                     IDNQRGATLSSSIDPANGVDTSELAKFFNLFSAVVFLYSGGMVFILESIQLSYNICPL
                     FSQCSFRVSNILTFLTLLASQAVILASPVMIVLLLSEVLLGVLSRFAPQMNAFSVSLT
                     IKSLLAIFIIFICSSTIYFSKVQFFLGEHKFFTNLFVR"
     gene            31597..32625
                     /gene="spaS"
                     /locus_tag="JN125_000963"
     CDS             31597..32625
                     /gene="spaS"
                     /locus_tag="JN125_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system export apparatus
                     switch protein SpaS"
                     /protein_id="HAY8870821.1"
                     /translation="MANKTEKPTPKKLKDAAKKGQSFKFKDLTTVVIILVGTFTIISF
                     FSLSDVMLLYRYVIINDFEINEGKYFFAVVIVFFKIIGFPLFFCVLSAVLPTLVQTKF
                     VLATKAIKIDFSVLNPVKGLKKIFSIKTIKEFFKSILLLIILALTTYFFWINDRKIIF
                     SQVFSSVDGLYLIWGGLFKDIILFFLAFSIFVIILDFVIEFILYMKDMMMDKQEIKRE
                     YIEQEGHFETKSRRRELHIEILSEQTKSDIRNSKLVVMNPTHIAIGIYFNPEIAPAPF
                     ISLIETNQCALAVRKYANEVGIPTVRDVKLARKLYKTHTKYSFVDFEHLDEVLRLIVW
                     LEQVENTH"
     gene            32638..32880
                     /locus_tag="JN125_000964"
     CDS             32638..32880
                     /locus_tag="JN125_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870822.1"
                     /translation="MCYMGVNFCNKIGIDQSEFEIESSIINSIANEVLNPISFLSNKD
                     IINVLLRKISSECDLVRKDIYRCALELVVEKTPDDL"
BASE COUNT        10489 a         4868 c         6695 g        11492 t
ORIGIN      
        1 ttgttgactg cctgtgcggc atctggtatc aaggtggcgt gaagccggtt caggttctca
       61 tgcggaacgt tggaacctat atccccccga taccaaaggc gaaatgtaag tgacaaaatg
      121 caatgaacac gttctccgtt aactgaggag catggtgata aataaaggta aatgcagaag
      181 gtgtagagtc tcgcagattt ctgacatcat agagcctaac attagatgca taacgctaca
      241 gattgtagaa tctctacagg tgaaatatac actggttggc gtttatgtcg caaaacatgt
      301 cattcaggtt catctcacca ataaggatat gagtgaagtg gaggataagt gagtctgctg
      361 tcagagtttt ctggtgtatg tcagtaactg cgaaccatgt ctgcttgata tgggagctta
      421 tggaggccct ctgtacaagg ttagggagct aacaaagcag ggataaaaag tccgcctgat
      481 gcaggcacgg ttcgttaaat cttttgccat tggtaacaaa atggtgcgat gaatgttcag
      541 gctatcttta tcttgatggt ggttcagctg tttggtaaag aaatcgctgt aacaatagaa
      601 gaactgcagg tagtactggt cccacatcgt ttgctcagtc aactggtgaa gttccgtagc
      661 gcgtaaatta atgctttgca tgaaacgtta ctggagtgga tgaaagaata cctgcatata
      721 tcattactgc gttggattac cagtacaaca gattgaatga actggacatg ttgatagacg
      781 gcattgaaaa gcagcttata agcatagtgc ggcagagtta attggagagc acttcgcctt
      841 ctgagtatta agtaagcatg gtggtacctg cggatactat ctattcactg tgctcggtcg
      901 gcagccttac tgaccaagga gttgggggag ttgataacaa agttgaaaaa acagctctca
      961 accaaggtgg ttattgtaac aatagcaaat aagctggtgt gacctgtatc acaataaccg
     1021 attatggacg taaatacgac aaaaatatgt cagtatcagg cggtattaat tgctgatgct
     1081 gatggacatt aactcttaat aaaagggtgg atgctgaaag gttgttatgg tgacggacgt
     1141 gatgacgacg gaaaagagta tgaggttttg gatttaaagt tcgttcgggg aataaggacc
     1201 cggtcagcta attctcatag tagttcgcat tgctggatgc aatactgtgc tgcaattact
     1261 cgtcgatgtc ggaacaacgg aagccttgca aacggggatg tattcataca ggtgttatgt
     1321 tatatggggt tttattgcag ggggctatac caagagaata tatgatatct catcagactg
     1381 atgtgagggt aaatgagaat agagtaaacg aacaaggttg ttttttggcg aggaagcaga
     1441 tgtatgacaa ttcttgtgga gctgccagtt tactctgtgc cgcaaaggaa ttaggggttg
     1501 ataaaatacc acaatacaaa gggtctatgt ccgaaatgac aaggaagagt tctcttgatt
     1561 tggataatcg ttgtgagcgg gatttatact taataactag tggtaattat aatccgagaa
     1621 tacacaaaga taatatcgcg gatgccggtt attctatgcc tgataagata gtcatggcta
     1681 cgaggcttct tggattgaat gcttatgtcg ttgaagaaag taacattttt tcgcaagtaa
     1741 ttagttttat ttatcccgat gcaagggact tattaattgg catgggatgt aatatagtac
     1801 atcaacgaga tgtgttatct tctaaccaaa gagttttgga agctgttgct gtatccttta
     1861 ttggagttcc tgtcggcctc cactgggtgt tgtgtagacc tgatggaagc tatatggatc
     1921 cagctgtagg agaaaattat tcttgttttt caactatgga attaggtgca agaagaagta
     1981 attctaactt tataggatat actaaaatag gtatttccat agttataact aatgaggctt
     2041 tgtaaattgt cgttttttat ctgtgaagga gcttgaatat tttggggcgg ggggcataac
     2101 aaatgatatt actgagtaca aatttagcta tattgggcgg attagttgtg tgggaagacg
     2161 aaatgtttct cttgaaataa gtgaactccc tcaaggaatg attgagtgct taaatattta
     2221 agtgctggta agtttgagaa ggctggcata ttttgcagag caaacagtga ttgacttgga
     2281 tgatattttt attttagtca ctcgttgtaa ttggagtatg ctttatttta tttgaaaata
     2341 gatgtatttt atacccgcaa tttaaactgt aagccctatg aggggtatgg atattataag
     2401 ttactctttg actaagcata acttttgggg gtagaaaaat aaatctcttg ttaataatta
     2461 acatgatttt aaaatcaaac ttgtttataa ttataaaata atgtaagtcg gtcattttat
     2521 gggaagatta ggagaataaa acagtaatta tatttgagaa atctgctaat atattcttaa
     2581 agcttttttg atactgtgaa cgaagtctgt taatggtgaa ttttttgttt atcaccatgt
     2641 aaaaaaattg agtagtaaaa gcgttgactg ctaatcctcg ctgtttttat tgaaacgatt
     2701 aaaaatacgc tgaatatttt cggccagtca ctcatcttca cataaaattt tgaccatcat
     2761 gccgcatccc ttagttgcac aattcatttt caatgatatg aatattacta atttcaccag
     2821 ataatgttct cgtggtcagc agggtatgag ttttcaccgt aattttaagg aaacacagtg
     2881 cgtggggatt gaataacaga tagccgacgg aattacccca ccggctgaaa gtcaagttca
     2941 acgaagattt ttattatctg aattgggcag tttacatcag tgttcgatgt ttatgaagac
     3001 gatagatggc gagaaattat atcccgaata gcttcatcta tttctctctg aactgttttg
     3061 tttattttag ataatgtaaa tattagagtt ctgtttgttt tattctcttt tctttttatg
     3121 taagtccgtt tgtctttaga aataaataac gagtcaactt ttagcgaagg gttttgcttt
     3181 ctgtttttgc ttttctttat gatgtttaaa atttcttttt tatatatgtc cgggggcaaa
     3241 tttgtatcaa ggtcttttat ttcttccttt aatattggta gtgtagaact aagagattca
     3301 ttagcctttt caagtccttt ataataattg aataatatct tgtagtcatt aaagttaagt
     3361 tctgacgcga ttggaaatag agatattatt tcctgaggaa cgcttgctgc ctgaaaggca
     3421 cgagtgactt tcgcgcgaga cagattctct tttttggcta tgtctttata ggacatccct
     3481 gatactttca gaaaattaag accaatacca agttctcgga tgctatgctc ttttgctgtt
     3541 tgtatatcgt ttgctagttt tctggcatca agagtagata tatattcttt tgaatataga
     3601 acttcaagat ctgctcctgc atatattgca gatgctcttc tacgagtgcc atccagaatt
     3661 tcaattctac catcaatctc ccttcctatt acagggaaga attgttgtag ctttatagtt
     3721 tttatgatat cggctaatga ttcttctgtt agggattctt gatcgcgtac attcgttttt
     3781 tggttgacga aggttaaatc ttggatcctt ttatgaggaa tcttagcttt gataaaggaa
     3841 actttattac cagaatggag tgtaaactct ttcttttggc cttcctttat acttaacaag
     3901 tcgttgcaca aatccaccat atcacaccct gtttattcat attgatttat attgacaaaa
     3961 gttaaatgca gtgtgagcaa gattgtatgt aactgttgat gatagtcaac ggtagtctta
     4021 aaaattacta ttttaatagc tggattgatg caatttatct ttattggata aaagaataat
     4081 attcttgtgg agctctgatg tgagagctcc atagatgaaa aaatgcttat caattactat
     4141 attgattttg tactattttt gactacagaa ataagatctc caatagtaat aatgtgttct
     4201 aatgcagatt catctatacg tagattgaac tcaaaactaa tcatatccag catttcaatc
     4261 agagaaagag aatcggcaga aagatcttca ataaatttag tttcttcaga tagtttgctg
     4321 tacgctatac catagcaaaa ggccactatt gataatattt tttcttttat catattttaa
     4381 tccttattga tattctttaa tacttttgat agggaagtgg ttacatcttt tgctgcttta
     4441 tatatattat tgttttcagc tgtaatatca ttgttatttt ttaaatcaga tatatcatct
     4501 gtaagtaatt ctgcagaggt atcgtcaatt tttgacaata ccttgctgag ggcgctagat
     4561 acttcttttg ccttttcata gatcgcatga tttttatcaa ttgtatctgc gttggtttct
     4621 gttacgtagt ttattgtatt tgcatctgta acttttaatt tgttgtttat tctgtgttct
     4681 gttgtggatt ttgtaatgtc ctttgatttt tcctgtaact ctcgttcttg tgttcctgat
     4741 ttagttccaa tgagagatat aagattactt agggagtttg ttactttttt tgaagcttca
     4801 aatatcgttt cccgtgttaa atatgtgtct ccatttcttg ataaaaaatc agtctgaagt
     4861 acttttgaat cagtgtttga gttgaattta ttgatttgcg aagctactct atgagaaaga
     4921 gaagcgctac ttttagttgt atctgatgag ttatcattac tgcttgtcac tccttccggg
     4981 tggagagggg gggtggttga agagttctgt atgttcagag gcctgtgtcc ccgagaaaga
     5041 gagttatttg tagatctttc ttgactactc gtagttaaca ggtctgaacc tattccatcc
     5101 gaattatctg gagtatggtt gaaaaccttt tctaaagctg aattatttgc aaatgtctgg
     5161 acagtatctg atatagagtg tggtagaacg gaagttactt tttgaactag tgctctttgt
     5221 ggatttagta atgagtttcc gttacgggat aatagatcgt ttgtctgaga agtaggagac
     5281 tgtgcatcat tttctgggtt ctcgtgatag ctattgtcat atactctgtt gtcaaaaact
     5341 ctattatcgt aagttctatt atcattattt atatgatagt gaattacagg ttgggatgtt
     5401 ttctcattgg ctccgggggt tggtccgcca tctggcatat cttcgggagg tgtagggagg
     5461 ccatcttgga taggatgcga atcttttata tcttctaaaa tatcattaag gacttttctc
     5521 aacagctcag gaaacacggc tactgtattt aagtctcttg acagtttacc tataccaaat
     5581 cctttactat caatagtatt tttacgttga ttgcgcaaac tatcaaaggc aagttttgcc
     5641 tgtgcgtcaa ctaaatcatc tagtttgaga gatgaaacag tttcattact taactttaat
     5701 tcagcaagaa tattattctt gataaatgat gatacttcag tattgaggag tttttgtccc
     5761 aatgataaag cttcaccaga tgtgtgttgt tgtgctaata gtgcaagtct gtgctcaatg
     5821 ttttgtcgta attgatggag tttcttattc tttgccgacc atggtccaaa ggcagaatct
     5881 tgggataatt tatcttttat aattagttcc gaatactgtg cgacaatttt ttgaagtccc
     5941 ttttcgtttt caaaattaag accattttga tgtactaagg agtacaaaac atttgaaaat
     6001 tcgagaatct cgcttttggc atacgcattc attgagttgg aataaatgct tcttaacaca
     6061 tcttctttcc ctgaggaaga aaataaaaaa tcaagacatt tctgattaaa agacgttgca
     6121 aagttttctt tttcagacac tgatgctggt gtttttagag aagtttgcga actatggata
     6181 tcggatattt tgctttttaa ctcgctgtat tctgttgatg atggtgaagt tgccttatat
     6241 aagaatgttg gcgcttgagt attatttaca ttatgcatgg cgcacctcag aaatggagaa
     6301 aaagtttatc tgtatctgta catgagctta ttgtactact caaaaccttt actaaattat
     6361 caaaaatact attggcatta ctgtattttt gaactaaagt ttgaagatta tttttcattg
     6421 tttcatcttc ggcagagaat ccggcattcc atgcctgata ttttgcatta tctagcacaa
     6481 cctcgccatt tccacctaga ttatctaagc tttttaacat attgtctatt ggggtcatgt
     6541 ttatattgac aacatatccc ccgttttttt cagatacctc gccgattgtt ccacctaatt
     6601 ctgtaagcca tttatttgct tgttccttac taacagtatt atttgctgga tatagcggtt
     6661 tatctttata tttttccttg agctttgtca attcgtcttt aagcgatttg acttgtaatt
     6721 tcacggagtt tccgtcgtta cctccgggag agatccagcc ggcaagactg gaaagaacag
     6781 cgctaaaatc ttgatacatt tgagtatatg aactaacggc atgttcatat actttcagat
     6841 actgttcatt aatattattg attgactttg caattttatc ccacagttct ctgtgagata
     6901 tcatttcata tccatcaagc tcggcttctt tcggggctga atgtaataat tctcttgcgt
     6961 ctttattaat tggatattct ttcttggaaa gaatatccaa tagttgagcg gatttgttta
     7021 catccatgct aatctgagat gaatgtaatg ctatttcttc tagcgatgtt ttagtcaacg
     7081 ttttttgtga gagatctttc tttaatgcct gatttgttgt tctgatatta tgaagggtgt
     7141 cgttgagcat agtaagggaa cttacaggat gagaactggt cgttgttttt atatcagaat
     7201 taactgtttc ggttgatgaa ccgttggtat tgtttgggct gaatgatgag gtggaaatac
     7261 tattagtcag agttgttata ttcatggtta tttccttata ggaagagcca tatattatta
     7321 tggctcttgg atatattaag ctcgaatgtt accagcaatc tgactggctg tagaattcct
     7381 tgattggttg atgttgtcaa ttatattcaa taatttttgt attaattgat ttgtcgcttg
     7441 ggatgcttct ttagatactt gggatgcttc ctctgcttgt ttactgctgg cctgactgat
     7501 tagttgttct tcttcttcaa gagcagatgt ataacgccct cctgatgtgg atatattacc
     7561 agcaacggct gatgtctcca ttgttgcacg gccaatgttt tgtttttgct gagcagaaag
     7621 ggtattgagc tcgtaagctc ttctctgggt gtcaatttta tcctgcaaag aaatatcggg
     7681 agaactaaga gaagttttat gttcagttga cagggatata ttatctggtg ccagtttatt
     7741 tttacctaaa atttttgtgc tagagttagt ttgtggtgag gtgatatttg tatctatttg
     7801 tttatttaac cctaatttag aacctgcaag ctctttttca agagattgag cagtggcaag
     7861 gttctttctt aaggctcctt tttgttcgct tatccctgaa tgcgtttttt tggcaccgat
     7921 acccgttata cctacttgtg tgaccgctcc agtaatgctt gatgataggg ctgctaggcc
     7981 ttgccgaaca atgttctctg cagctgattt tgtagcatcg aacgcaatca atgacaattg
     8041 agagcccaat ctagtttctg cagtgcggag agcagaaagt agaacggcta cactaataat
     8101 taaagaaaca gcattagaag aaagactgga aatatccagg gtgttctctg gagtaattgt
     8161 gtgactcatt tctgaaagat ctttcatctt tttgtcagta aggcgagcaa tgatttctga
     8221 atcatgctga acctgctctg ataacttcaa aagttgatca tcatttaatg tagttgttaa
     8281 tacgggattt ttaccgacat taagtggaat atgtgctgct aactgctgat aattttgtga
     8341 tttttgtgtt tcggaagaac tttgagtttg ttttgtggat atatctgtat ataaaatcga
     8401 ggctgatttt gtgttttgaa tttccataac attctcctta tttgtatcaa gcagtagttt
     8461 gttgcaaaat tgcttttgca acatcagttc tattagcctg agagttggac attgaggcta
     8521 acagctctgc aattacttcc tgcaattggc cgaatttttc tattgcgtca ccgatgtatt
     8581 ttgacagttg ttcaacttga tatttcgata atgtcaggtc tgctagattt ttcgacgcgt
     8641 tgttttggaa aacagcagaa gcgacatttc ctcccgcttg tgtggcagag ttaacacttt
     8701 ctcctaataa aactgcttgg tttaaatggg tggaaataat ttgtttggat attacttcat
     8761 cacccgctgc accaagaaat ttatttaatc tggcaacagc attagtgatt aaatcgtcca
     8821 gttgagaaga aaaattcttg agaaactttg gtataaggtc tgtgagggtt ttacctatta
     8881 ttttgccaat attctctgca agttttgctg ctgcctgttt accaacagtg gctacgagaa
     8941 cgactgctgc aaccaagaca agagcgcctg cgattgcccc cagaatagag ccaatcattt
     9001 tggctttttt cgagtcgacg cccaagcctt cgagcatttt tgtaaatgca tctgaaagga
     9061 gtttgattaa gggttcaatg actgctttca tgatcggatt cagggcttgt tccatgaagg
     9121 aattgccggt cgctgcttgt actatagcat ccgtaaccat aagagctaaa ccaacagctg
     9181 ccagtgctag agatgctcct ccagaaaaag ctgctgcaac aacactaacg atagttaaaa
     9241 gtgccccaag tattttccca acacaaccca ttactctgtt gagttcttct gctttacgta
     9301 cttcagcagc atactcatca gattttctct ccatttcagt ttttcttgat tcttggagag
     9361 actggaatag agccagatca ttttttaaag attcttcatt attttttcca actagttgaa
     9421 taaaggttgc catcaattga gtaacactgg caagtccggt taatgatttc tgctgggttg
     9481 atagctgttc agcagatgct gtgtttgaaa atgcagaaaa agagtctatt tctttttcga
     9541 gttgcattga tttatctgta agtttgctat gaattgacag ggttttctgc tcaatcaatg
     9601 tcctgtcttt aactgctgcg tcttttttga tagtgagttg tatttcttcc cgtcttaatt
     9661 ttttattttc tggtgaatct gggtcgagtt cggataatct tgtttgaatt tggttaattt
     9721 tattttctag gtcttttatt ttagaatctg cgttttttag tttattaatt tgtttttcat
     9781 agtctctggt tagtccttca gtttcagata gaagagtatt aattttatcg gagaattcta
     9841 ggtttttttg ctgtcttgcc tgttgctggg acttccaggc agtaatttta tttgttaatg
     9901 cagttaaaga tttttcaccg agtatttgaa taaggtttcc aattaaaagc gttagttggg
     9961 aacttgcatt taatgacttt ggtgctttaa gttcagggat taatatattc gaagttgagt
    10021 gtgcattagt tgtattaata tttttgttag cagtaagatc agcaattgta agagaaaata
    10081 atttgttagc tgcatcattt gcagcctgga tagtattgtc tccaagctca gtggaagcca
    10141 atattttggc aagaggcaaa ccagtggttg tggtgcttac attatgcata ataattactc
    10201 cttgatatcc tgaattgcgt ctaagtatga ttgtgctttt atttttaatt tttcatcatt
    10261 gctgtgttga attacgagtt cgaagcactc tttggctttc aagggggctt tcaaccgaag
    10321 ctggcattgt ccagtatgga ataccggtgt atagtcattt tttcctaatg caaaagcgac
    10381 agcataaagg tctgctgctt gttggaactg ttcttttatc tgataaatag ctgcgagtcc
    10441 cataatgtag tctacattgt aaaagtcgta tatacataaa aatctgaaga aaacttcagc
    10501 ttcctctatt cttcctttgt tgtaaaagtc ataagcatat gaataaatgt catccatcat
    10561 atcatcagga attgcattaa tatctttcag tgtagcgcca gagttaattg catcaattac
    10621 tgcagtagag atgctttcat tttcagtgat atttaaagac ataaggtctc ctttttgtct
    10681 gcattacttt aataagtata aaatttaata taaacagatt taatttgtat tgctttgacg
    10741 gtatacagcc tttagaacct ctgcgcttat ttctatttgt aaaacttttg ttgattcatt
    10801 aaatatttta tcgtagacgg aactggatac tagatttgta agatccttca tttgtgtgtt
    10861 aaacaaatcc atgtcactgc tataacgttt taaaatcttt gctctgaggc cagatgaggc
    10921 aatctcgttt agtgctgtat gactgataga tgtttgtgct gatttttcat caagttttat
    10981 atccgggaat tttttttcaa tagctgcaaa tatgtttttt ttgttatctg aggtcaaaac
    11041 aactccattg tgtatggcca tttcatctat acttctgttt atcattgaag agacataaga
    11101 ggttcgctct tggctcatcc aacaaaatag ttgattcccc gaattactat cttttatttt
    11161 gtctatgacg ctgtccctga ttttatttat attcaccggg catccaaaat tcttctgagg
    11221 aaagcgttgt tttaagttaa aaacagataa tattttcttt acaagcttat tgtgacttaa
    11281 cgaatcaaat gatgggcgag gaatcgcgaa ttcaacctgt ggaagtattt tgtttagaat
    11341 ttgcatgata ccccctatat gttagttcac ttctgaagtg atgtttgcaa tggttagttt
    11401 aatacaaaat aaaaattcgt acaaagattc aatgagttca tcaggtgaaa gatatttttt
    11461 gtagtgtttc ttggtcaaaa cacattgatg agtatcaggg agaagacaga tagaagaacc
    11521 ataatctcta ctcaaagagt agttaaggat gagtatgtgt tctggattaa taatattttc
    11581 tgtaaaaagt tcatgttcat taagaagtcc ggtcaaaaag atgtattcat cattatctgt
    11641 tatacaaaca ggtatttgtt cttcgagcaa tataaaggct tgatttttat cgttaaaatc
    11701 aagctttgca cctgttattt cataaagttt atcatatagt ttgcgacaca tttctatggc
    11761 cttctatata ttagaatgag agttattcaa taaaagctta ttgacctgta ataagtcgtg
    11821 aatgtaaagt ttggttccaa gatctggcga tttaagagaa ttgtaataat caatagtttt
    11881 tattgacttt tcgataattt cttctttttt atctgttgct ccgattttta attcgtttaa
    11941 tacacgagac atattgctgg gtgctgattt tactaagtat gagtggcaag cgttgatgac
    12001 cgcatcaaag tcttctgaag atacattttc agtaggatgt ttgtaaagtg aaattgataa
    12061 aggcttgaat gtttttgggg tgtggataag gttaatttta ttgaaacttt taagatagct
    12121 acgtcgtaat tgagtcaatc tggaaagatc aaaatcagat tcaatatact tcattatctc
    12181 gttataagac tgattgagac tttcaatgcg ttgcctaact ttatttgcat acgcgtatac
    12241 attgttaggt gtagcaacca atttaacgtc agggagtgga aagtatattt cagaatttcc
    12301 tgctttaaga acattaagtg ccataccagc acagttttca gatttactga ttaatttata
    12361 atttgccaat tgtctgaaag catctgcttt cttttggcat ataaattttg acatgtttgt
    12421 ttcatcaagg ccaaaaaggt tatagctgat tttaccatcc tttgttttat tatcacctga
    12481 taatggaatg tatactttat cagcactgac cccccaataa ccataggggt cttttttttg
    12541 attagctctg ggaaaaaata tttttttgtt gttattttga tcttgttttg aatttaataa
    12601 gtttctaacc tcttggcctg catcaagtct ttcggctgtt tggtctgaaa tcatatttag
    12661 tttgtcttgt ttataggtat cgacactgta acctgagcgt ttttcaaaaa ggtagtttat
    12721 ttctgtatct tttgtaacat tcccgccggg ataccagctg agataggtat gagttggttc
    12781 ctgtagtaaa ttgtttttta tactgatact ggtatgccct aaatgggtta tgcctctatt
    12841 tccccagcaa cgaaacacta aatgtctttc aagatttttg gctgtaccga tgccatgaaa
    12901 actctctgcg gtattcaaca ttaatttgat gtctttacct gtaaaagaat gttgaattga
    12961 atttttgact gcttcatagg cggcaaacgc actttctgca gatttttcgc tagctaatgt
    13021 cttgaggaaa agcaataagg atttttgatt cgctagtcga taatttttta gttgttcatt
    13081 taatatctgt gaatttatct ttgcattaat agtgcttaat gttctgaaaa agagatcctt
    13141 taggttgaat ttctgtgcta ccaatatagg tccatgctct gtatcttcaa cgcgtatagg
    13201 cccttttgta ttgcttgcgt caatgaaatt gctaattttg agaatcatac tttattaact
    13261 ctccattacg tggtgattgt ggggatgtaa aatgtatttg atatataata tattcaatta
    13321 ataaatttag aaacttgagc ctgttaacat aatcaaattt tcttttgctg tatataatat
    13381 gtacctcgtg agcatatgta gtgctggttt catcatgaaa tcccacaagt taaagtgtct
    13441 gatatatcag gctcggagtg ttatagaaaa agagagaacc ctgttgaata agtatctttt
    13501 ttgttgtaaa acgaggtaca aaactgcaat caatgcccca tttatgactg aggataatta
    13561 aatgcacata actaatttgg gattgcatca ggtttcattt caaagcggag attcctataa
    13621 aggcgcagaa gaaaccggaa accaaaaagg tgtaagcgtg atttcatatc aaagagttaa
    13681 aaatggagag agaaataagg gggtcgaagc gcttaatcga ttatatttac agaaccaaac
    13741 aagcttaaca gggaaaggcc ttttgtttgc gcgtgacaga gctgcagttt tttacgaggc
    13801 aataaagttg gcaggtggtg atacgtcaaa aattaaagcc atgatggaac aattagatac
    13861 ctataaactt ggtgaagttg ataaaagaaa tattaatgag cttaataaag taataagtga
    13921 agagatagga gcacagctag gcattaaaaa taaaaaggaa ttgcaatcgg aaataaaaca
    13981 aatatttact aattatttaa ataataagaa ttgggaaccg atcaacaaaa atattaatta
    14041 tcatgggaaa aattatggtt ttcaattaac acccgcctct catatgaaga tagggaataa
    14101 aaatatattt gtcaaagagt ataatggaaa aggaatttgt tgtgcttcta cgagagagag
    14161 tgagcatatt gcgaatatgt ggctttcaaa agtggtggat gacgagggga aggaaatttt
    14221 ttcgggtatc agacatggag ttatatcagc ctatggattg aaaaaaaact catctgaaag
    14281 agctgttgca gctcgtaata aagctgagga gttagcaagc gcagcattat atagcagaca
    14341 agaattatta tcacaggctt tgtctggtaa aacagtagat ttaaagattg tttcgacttc
    14401 tcttctgacg ccgaccagtt taactggggg agaggagagt atgttaaaag atcaggtaaa
    14461 ggcattaaaa gggttaaact ctaaaagggg ggaaccaacg aaattattaa ttcggaatag
    14521 tgatggtctt ctgcaagaag taaaggttaa tctaaaagtg gtgacattta actttggtgt
    14581 aaatgaatta gcgctaaaaa tgggcttagg ctggaggaat gttgacaagc ttaatggtga
    14641 atcaatatgt tctttgttgg gggataattt cctcaaaaat ggtgtgattg gaggttgggc
    14701 tgcagaagct atagaaaaaa atccaccatg taagaatgat gtgatatatc tggctaacca
    14761 gataaaagag attgtaaaca agaagttaca aaaaaatgat aatggagagc cgtataaatt
    14821 gtcacaaaga atggctctat tggcttatac tataggtgct gtaccttgct ggaattgtaa
    14881 gagtgggaag gacagaacag gtatgcagga tgctgaaatt aaaagagaaa taataagaaa
    14941 acatgaaaca gggcagtttt ctcaattaaa tagtaaatta tcctcagaag agaaaagatt
    15001 attttctact attctaatga atagtggtaa tatggaaatc caagagatga atactggtgt
    15061 gcctggaaat aaagttatga aaaaattacc gctatcttcg ttagagctgt cttatgctga
    15121 aagaataggg gaccccaaaa tatggaatat ggtgaaaggg tattcgtcat ttgtataaga
    15181 ggaatatatg gaagatttag cagatgttat ttgccgagcc ttgggtatcc cttcaattga
    15241 taccgatgat caagcaatca tgcttgatga tgatgtgtta atatatattg aaaaagaagg
    15301 agattcaata aatttattat gccctttttg tgcattgcct gaaaatataa atgatcttat
    15361 atatgcgttg agcctaaatt actcagaaaa gatatgttta gctactgatg atgaaggtgg
    15421 aagtctaatt gcgcgattag atcttaccgg gataaatgaa ttcgaggata tatatgttaa
    15481 tacagaatat tatatttcgc gtgtgcgttg gctgaaggat gaatttgcgc gaagaatgaa
    15541 ggggtattaa tgtcccgttt cgtatttatt tttctgtgtt ttatcccata tttagggaga
    15601 gctgattgtt gggataaggc tggtgaaagg tacaacattc catcgagttt gttaaaagcg
    15661 attgcggaaa aagaatccgg atttaataaa tttgcagtca atgttaataa caatggaagt
    15721 aaagattatg gtataatgca aataaatgac tttcattcta aaagacttag agaaatggga
    15781 tatactgagg aaatgctaat tagtcatcca tgtctttctg tacattatgc agcaaagtta
    15841 ttaaatgagt ttatgctgat gtatggaaga gggtgggagg ctgttggtgc ctataatgca
    15901 ggaacatctc cgaaaaagaa aaaagaaaga ttaaagtacg cagaggatat ctataaacgc
    15961 tatttgcgga tagcagcaga gagcaagcag aataatcgaa ggatataaga ggatttatgt
    16021 ctgaggcaaa gaactcaaat cttgcaccat tcaggttatt agtgaaactc acaaacggtg
    16081 tcggggatga gtttccgtta tattatggga ataacttaat tgttctcgga cggacgatag
    16141 aaacacttga gtttggaaac gataatttcc cagaaaatat tattccagta acagatagta
    16201 aatcggatgg tataatttat ttggccataa gtaaagataa tatctgtcaa tttagtgatg
    16261 aaaaaggtga acaaattgat atcaattcac aatttaactc atttgaatat gacggagttt
    16321 cttttcaact taaaaatatg atggaggata aatcgagagt tcatatacta aacggaatgt
    16381 ataataaacc ctcggtgttt tttttctttg ctgttattgt tgtgttaatt ataatttttt
    16441 ccctctcttt aaagaaagat gaagtaaaag aaattgctga aattatagat gataagagat
    16501 atggaatagt caacacagaa cagtgcaatt atattcttgc cgaaacacaa aatgatgcgg
    16561 tatgggcatc tgtagcctta aataaaaccg gatttaccaa atgcagatat attctggtgt
    16621 ccaacaaaga aataaataga attcaacaat atatcaatca acgattccca tatatcaatt
    16681 tgtatgtgtt gaatttagtg agtgataaag cggaattact ggtattttta agtaaagaaa
    16741 gaaatagttc aaaagatacc gaacttgaga aattgaaaaa tgctctgata gttgaatttc
    16801 cgtatatcaa aaatattaaa ttcaactatc ttagcgatca taatgcaagg gaggatgcta
    16861 aaggtatttt cacaaaggta aatgtccagt ataaagagat ttgtgaaact aataaagtta
    16921 catattctgt cagagaagaa ctgacagatg aaaagcttga gctcattaat agactgattt
    16981 ctgattataa aaatgtatat ggagatcagt atattgagtt ttctgtactt ttgatagatg
    17041 atgattttaa aggtaaatca tatcttaaca gcaaagacag ttatgtaatg ttgaatgata
    17101 aacactggtt ttttttagat aaaaataagt gaggataaaa tgagtgttac agtaccgaat
    17161 aaagattgga ctctgagttc attatctgaa acttttgatg atggaactca aacattacaa
    17221 aggcaactaa catcggcact aaatgcatta gctcaaaatc cttcgaatcc acagttgctg
    17281 gctgaatacc aaagtaaatt atctgaatat acattatata ggaacgcgca atctaatact
    17341 gtgaaagtga ttaaggatgt tgatgctgca attattcaaa acttcagata atagggagca
    17401 ttcatgaatt acatttatcc agtcaatcag gttgatatta tcaaagccag tgattttcaa
    17461 tctcaagaga tatcaagcct ggaagacgtc gtgtcggcta aatatagtga tattaagatg
    17521 gatacagata ttcaagtatc acaaataatg gagatggtaa gcaatccaga atcattaaac
    17581 ccagaatctt tggccaagtt acagacgacg ctctcaaatt attcaatagg agtatcatta
    17641 gctggcacgt tagcaagaaa aacagtttcg gctgttgaaa ctttattaaa gtcttaattt
    17701 atatgattag gtataaaggt tttattttat tcttgttgct gatgttgatt ggatgtgagc
    17761 aacgtgaaga gttaatttct aatttatctc aaagacaggc aaatgaaata atatctgtgc
    17821 tagaacgcca taatattact gctagaaaag ttgatggagg taaacagggg atctcggtac
    17881 aagtcgaaaa ggggacattt gcatcggcag ttgatttgat gcgcatgtac gatttgccaa
    17941 atccggagag agttgatatc tcacaaatgt ttcctacaga ttcattagtg tcttctccaa
    18001 gagctgaaaa ggcccgttta tatagtgcta ttgagcaacg gctggaacag tctttagttt
    18061 ctattggtgg tgttatttcg gcaaaaatac atgttagcta tgatcttgaa gaaaaaaata
    18121 tatcttcaaa accgatgcat atatcagtaa tcgctatata tgactcaccg aaagagtctg
    18181 aactattagt tagtaatatt aagcgatttt tgaaaaacac cttttctgat gttaagtatg
    18241 aaaatatatc tgtcatatta actccgaaag aagaatatgt ttatacaaat gtacaacctg
    18301 ttaaggaaat taaatcggaa tttttaacaa atgaagtaat atatgtattt ctcgggatgg
    18361 ctgtactagt tgtcattctt ttggtatggg cattcaaaac agggtggttc aagagaaaca
    18421 aaatatgata agaatggatg gaatttataa aaaatatctt tcaataattt ttgatccagc
    18481 gttctatata aatagaaatc ggttgaattt gccttctgaa ctgttagaaa atggcgtaat
    18541 cagaagtgag attaataatc tcataattaa taaatatgat ctaaattgcg atattgaacc
    18601 tttaagcggg gtaaccgcta tgtttgttgc caactggaat ttacttccag ctgttgctta
    18661 ttttatcggt agtcaagagt ctcggttaat taatcatagt gagatggtta ttagttatta
    18721 tgggggcaaa atcagtaagc aaggggaggc cgctattcga agtggttttt ggcatcttat
    18781 tgcgtggaag gaaaatatat ctgttggtat atatgaaaga ataaacttat tatttaatcc
    18841 aattgctttg gagggaaatt atacgcctgt agaaagaaat ttgtcccgat taaatgaagg
    18901 tatgcaatat gcaaaaaggc actttaccgg tatccagaca tcatgcctat gatggtgttg
    18961 ttataaagag aattgaaaag gaattatgta aaaccataaa agatagagac actgagagta
    19021 agaagaaagc aatttgtatt ataaaggatg ctacgaaaaa agctgaatca ctgcgtatag
    19081 atgctgtatg cgatggttat caaattggta tacagactgc ttttgagcat attattgact
    19141 atatttgtga atggaagtta aagcaaaatg aaaacagaag aaatattgag gactatataa
    19201 ctagtttgct ttcagaaaat ttacatgatg agaggatcat tagcacttta ttggagcagt
    19261 ggcttagttc gttgcgtaat acagtaacag aattaaaagt ggttttgccc aagtgtaatt
    19321 tagcactgag gaaaaagtta gaacttgatc tccataaata tcgctcagat gtcaagatta
    19381 ttttaaaata ttctgaaggg aataattata tattctgtag tggtaatcaa gtagtggagt
    19441 ttagtcctca ggatgtaata tcaggtgtta aaatagaact tgcggaaaaa ttaacaaaaa
    19501 atgataaaaa atatttcaaa gagttagcac atgagaaact gagacaaatt gcagaagact
    19561 tgttaaaaga gaatcctgtt aatgattaat caaataaatg caagcaatgc tctgcagcaa
    19621 agattaaata gtgaagaatt tgttaattta aatgagagat tatcatcttc gcaatcattt
    19681 gatgaggata taatctatga aataatgcaa tatttctcac agagtgaatt aaattccata
    19741 gataatgatg aactgcacaa taagattgaa caattattca attcacgttt tccttatctt
    19801 acagctgcac aaaaaagttc acttcttaat aaactcatag atgcaaatca atatgtcgat
    19861 ttgcatgagg gattttatgc atcattgtcc atatataaca atattgattt ctatattaag
    19921 actacaacct tcgattcatt aattagtgtc tttgaagcag ggagagaggc agatgattcg
    19981 acatggtagt aataagttga aaatatttat tttaagtata ttgctattaa cactgagtgg
    20041 gtgtgcttta aagtcatcat ctaattctga aaaagaatgg catattgttc ctgtaagtaa
    20101 ggattatttt tctattccaa atgatttatt atggtcgttt aatacaacca ataaaagtat
    20161 aaatgtttac tctaaatgta ttagtggtaa ggcggtttat agttttaatg caggtaaatt
    20221 catgggcaac tttaatgtta aggaagtaga tggatgcttc atggatgcac aaaagatagc
    20281 tatagataaa ctattttcta tgctgaaaga cggggttgtt ttaaaaggta ataagataaa
    20341 tgataccatc cttatagaga aggatgggga agttaaatta aaattaattc gagggatata
    20401 attgtattgt gagtaaatat aaaggtctaa atacaagtaa tatgttttac atttactcta
    20461 gtggacatga accagttaac gttgagcttg taaaagataa agaacgtaac ataattgagc
    20521 tggctccagc atggaagggt ttttttttgt ccgaaatcaa aatataaaat tcagtgataa
    20581 tgtgaactat cattatcgct ttaacattaa tagttgtgca aaatttcttg ctttttggga
    20641 ctatttcagt ggtgctctag tagagcatag ccatgctgaa aaatgtattc atttctatca
    20701 tgagaatgat cttcgggata gttgtaatac cgaatcgatg cttgataagt taatgttaag
    20761 attcatcttt tcatctgacc agaatgtaag taatgcactg gctatgatac gaatgactga
    20821 gtcatatcat ttggttcttt atcttctgag aactattgag aaagaaaagg aggtaagaat
    20881 aaagagtctg acagagcatt atggtgtgtc ggaggcttat tttagatctt tatgtagaaa
    20941 agctttaggg gcaaaagtca aagaacaact gaacacttgg cggttagtaa atggtttatt
    21001 agatgtattt ttgcacaatc aaacaatcac ttctgctgcc atgaataatg ggtatgcatc
    21061 aacatcccat ttttcaaatg agataaaaac acgactaggc ttttctgcaa gagaattatc
    21121 gaatattact tttttagtga aaaaaataaa tgaaaaaatt taatattaaa tctttgactc
    21181 tcttgattgt attgttacca ttgatagtta atgctaataa tattgactct catttattag
    21241 aacaaaatga catagcgaaa tatgttgctc aaagtgatac ggtaggatct ttttttgaac
    21301 gtttttctgc gttattaaat tatcctattg ttgttagcaa acaagctgca aaaaagagaa
    21361 tatctgggga gtttgattta tctaatccag aagaaatgct tgaaaaaatg acattacttg
    21421 tgggactcat atggtataaa gatggaaatg cattatacat atatgactct ggagaattaa
    21481 taagcaaagt tattttgctg gagaatatat cacttaatta tcttattcag tatctgaagg
    21541 atgctaacct ttatgatcac agatatccta taagaggaaa cattagtgat aaaacattct
    21601 atatatctgg tcctccggca ttggttgaac tggtagctaa tacagcaact ttgcttgata
    21661 agcaggtttc ttctattggg acagataaag ttaattttgg ggttataaaa ttaaaaaata
    21721 catttgttag tgacagaact tataatatga gaggggagga tattgtcatc ccaggggtgg
    21781 ctactgttgt agaacgttta ttaaataatg gtaaggctct gagtaacaga caagccaaaa
    21841 atgatccgat gccacccttt aatattacac agaaagtatc tgaggatagt aatgactttt
    21901 catttagttc agttaccaat agttctatat tagaggatgt atcacttatt gcatatccag
    21961 aaaccaattc tatattagtc aaaggtaatg atcagcaaat acagattatt cgcgatatta
    22021 tcactcagtt agatgtagcc aaacgacata tagaattatc attatggata atcgatattg
    22081 ataaatctga attaaataac cttggcgtta attggcaagg aacggcttca tttggtgatt
    22141 cgtttggtgc atcatttaat atgagctcat cagcatcgat aagcactttg gacggcaata
    22201 agtttattgc ttcagttatg gcattaaatc agaaaaagaa agcaaatgta gtttcaaggc
    22261 cggtgatttt gacacaagag aatattccgg ctatatttga taataacagg actttttatg
    22321 tgtcattagt tggtgagcgc aattcttcgt tggagcatgt tacgtatgga acattgataa
    22381 atgttatacc tcgcttttca tctcggggac aaattgagat gtctttaacg atagaggatg
    22441 gaacaggaaa tagtcagtca aattacaatt ataataatga aaatacatct gtccttccag
    22501 aagttggaag gaccaaaatc agtacaatag cgagagttcc acaaggcaaa agtttgttga
    22561 taggtggtta tacgcatgaa acgaactcta acgaaatagt atctattcct tttctctcct
    22621 ctattcctgt aatcggtaat gtgttcaagt ataaaacaag taatatcagt aatattgtaa
    22681 gggtttttct gattcaaccc cgtgagataa aggagtcaag ttattataat actgcagaat
    22741 ataagagcct catatctgaa agagaaatac aaaagactac acaaataatc ccatctgaaa
    22801 ctactttgct ggaagacgaa aaatcattgg tttcatactt aaattactaa ctataaagta
    22861 ggtgatgtat gcttgatgtt aaaaatacag gagtttttag ctctgcattc attgataagt
    22921 tgaatgcaat gacaaattca gatgatggag atgagactgc tgatgcagag cttgattctg
    22981 gcttggctaa tagcaagtat attgactcat ctgatgagat ggcttccgct ctttcgtcat
    23041 ttataaacag aagagacctt gagaaactga aaggaacaaa tagtgatagt caggaacgta
    23101 ttttagatgg ggaagaagat gaaattaatc acaagatttt tgatttaaag agaactttaa
    23161 aagataacct tcctctagat caggatttta tagacagact aaagagatat tttaaagatc
    23221 caagtgatca agtcttagca ttaagggaac ttttgaatga aaaagatctt actgctgaac
    23281 aagtcgaatc attaactaaa attattaatg agataatatc aggtagtgaa aaaagtgtta
    23341 atgctggaat aaattcagct atacaggcta aattatttgg caacaaaatg aaacttgaac
    23401 cacagctttt gcgtgcatgt tatcgtggtt ttatcatggg gaacatatca acaacagatc
    23461 agtatataga atggcttggt aattttggtt ttaatcacag acatacaatt gtgaattttg
    23521 tagagcagtc actgattgta gacatggatt ctgagaaacc gagctgtaat gcttatgagt
    23581 ttggttttgt gttatctaaa ttaattgcaa ttaagatgat tagaacttca gatgtaattt
    23641 ttatgaagaa actggaatcc tcaagcttgc taaaagatgg cagtttaagt gcagagcagc
    23701 tattgctaac tttattatat atttttcaat atccaagtga aagtgagcaa attcttactt
    23761 ctgttataga cgtatcacga gccagtcatg aggattctgt agtgtatcaa acatatctat
    23821 cttctgttaa tgaaagtcct catgatatat ttaaaagtga aagtgaaaga gaaattgcga
    23881 tcaatattct acgagagctt gtcacaagtg catacaagaa agagctttct agataacagg
    23941 agatgaaagt gatccagtct tttcttaagc aagtaagtac taagcctgaa ttaattatat
    24001 tagtgcttat ggttatgatc attgctatgt tgatcatacc attacctaca taccttgttg
    24061 attttttaat agggcttaat attgtacttg ctattctcgt ttttatggga tcattttata
    24121 ttgaaagaat attgagtttt tctacattcc cttcggtttt gttgataacg acattatttc
    24181 gtctcgcttt atcaataagt actagtcgac taattttagt tgatgcggat gcgggtaaaa
    24241 ttattactac atttggccag tttgtcattg gtgatagtct ggctgtaggt tttgttattt
    24301 tttcaatagt aactgttgtg cagttcattg ttataacaaa aggatctgaa agggttgcgg
    24361 aggtagctgc tcgcttttct cttgacggta tgccggggaa acaaatgagc attgatgcgg
    24421 atttaaaggc tggaattatt gatgccgcag gagctaaaga aagacgcagt attctggaac
    24481 gtgagagtca attgtatggt tcatttgatg gagcaatgaa gttcattaaa ggtgatgcaa
    24541 ttgctggcat cattattatt tttgtcaatt taataggagg tatttctgtt ggtatgagtc
    24601 aacatggaat gtctctatct ggtgcattat ctacttatac catactaact attggtgacg
    24661 gattggtctc tcagattcct gctctgttaa tttctataag tgcaggattt atcgttacaa
    24721 gagttaatgg tgatagcgat aatatgggac gtaacataat gtcccagata tttgggaatc
    24781 cttttgttct cattgttaca tcagctcttg ccttggcgat agggatgttg ccaggttttc
    24841 cgttttttgt ttttttcctg atagcagtta ctttgacggc tttattctat tataaaaagg
    24901 tcgtagaaaa agaaaaaagt ctgtctgagt ctgattctag tggctatact ggtacatttg
    24961 atattgataa tagcaatgac tcatctttgg caatgataga aaatctggat gctattagtt
    25021 cagaaaccgt tcctttaatt ttattatttg ccgaaaataa gataagtgca aatgatatgg
    25081 aaggtcttat tgaaaggata agaagtcagt tctttattga ttatggtgtc aggcttccaa
    25141 ctattttata tagaacaagc aatgagctta aggtcgatga tattgttttg ttaataaatg
    25201 aggtgcgtgc cgatagtttt aatatatact ttgataaagt gtgtattaca gatgaaaatg
    25261 gagatataga tgctctaggt attcctgttg tttcaacttc atataatgaa cgtgttattt
    25321 cttgggtaga cgtttcatat acagaaaatc taactaatat tgatgctaaa attaaaagtg
    25381 ctcaagatga attttatcac cagttgtcac aagctttatt aaacaacata aatgagattt
    25441 ttggtataca agaaacaaaa aatatgttag atcagtttga aaatcggtat cctgatctat
    25501 taaaggaagt cttccgacat gtgactatac agagaatttc tgaggtatta caaagattgc
    25561 ttggagaaaa tatttctgtt cgcaatttaa aacttattat ggagtctttg gcgctttggg
    25621 ctcccagaga aaaagatgtc ataacattag ttgaacatgt ccgtgcatca ctttctaggt
    25681 atatttgtag taaaatagct gtttctggtg agattaaagt tgtgatgctt tccggatata
    25741 ttgaggatgc aataagaaaa gggataaggc aaacctctgg tggctctttc ttgaatatgg
    25801 atatagaggt ttcggatgag gtaatggaaa ctttagcaca tgctttgaga gaattgagaa
    25861 atgcaaaaaa aaatttcgtt cttttggtat cagtagatat acgtaggttt gttaaaagac
    25921 ttatagataa cagatttaag agtatactcg ttatatcgta tgctgagatt gatgaagcat
    25981 ataccattaa tgtattaaag actatttagt gaggtttaaa tatgagtaac attaatttag
    26041 ttcaattagt tagagatagt cttttcacga ttggttgtcc tccatcaatt attacagatt
    26101 tagacagcca ttcagcgatt accatttctt tggatagtat gcctgctatt aatatagctc
    26161 ttgtcaatga gcaggttatg ttatgggcta atttcgatgc accaagtgat gtaaaacttc
    26221 agtcatctgc ttataacata ttaaatttaa tgttaatgaa ctttagttat agcattaatg
    26281 agctggtaga gcttcatcgt tctgatgagt acttacagtt aagagttgtt attaaagatg
    26341 actacgttca cgatgggatt gtttttgcag agattctgca tgagttttat cagaggatgg
    26401 aaatcttaaa tgaggtctta taatcaatga gctatataaa attgctcact caattatctt
    26461 ttcctaatag aatctcgggg ccaatcttgg aaacaagtct tagtgatgtt tcgattggtg
    26521 agatttgtaa cattcaggct ggaattgaaa gtaatgaaat tattgcaaga gctcaggttg
    26581 taggatttca tgatgaaaaa acaatattaa gcttgattgg aaattctcgt ggactttcac
    26641 ggcaaacgtt gattaagccc actgcccagt ttcttcatac gcaagtcggc cgtggattat
    26701 tgggagcagt agtcaatcct ttaggggagg ttactgataa gtttgctgtt acggataaca
    26761 gtgaaattct ttatcgacct gtagataatg ctcctccgct atatagtgaa agggctgcaa
    26821 ttgagaagcc ttttttaaca ggtgttaagg ttattgattc tttactcacg tgtggtgaag
    26881 gacagcgaat ggggattttt gcgtcagctg gttgtggcaa aacttttctc atgaatatgc
    26941 tcattgaaca tagtagtgct gatatatatg ttattgggtt aattggtgag cgaggtcgag
    27001 aggttacaga aacggttgat tatttgaaaa actctgagaa aaaaagcagg tgtgttttag
    27061 tatatgcaac ttcggattac tcttcggttg atcgttgtaa tgctgcatat atagccactg
    27121 ctatagccga attttttagg actgaaggac ataaagtagc gctttttatt gattcattaa
    27181 caaggtatgc cagagcatta cgtgatgtgg ccttagccgc tggagaatca cctgccagaa
    27241 gaggctatcc ggtttcggtt tttgatagct tacccagact tcttgaaagg ccaggaaagt
    27301 taaaggcagg tggctctatt actgcatttt acactgttct tttggaggat gatgattttg
    27361 ctgatccatt agctgaagag gtaagatcca ttttagatgg acatatatat ttgagcagaa
    27421 atctagccca aaaaggacaa tttcctgcaa ttgattcctt aaaaagtata agcagggtat
    27481 ttacacaggt tgttgatgaa aaacatcgta ttatggccgc tgcatttcgg gagctacttt
    27541 ctgaaataga agagctaagg acaattattg actttggtga atacaaaccg ggggagaatg
    27601 cctctcagga taaaatctac aacaaaatat ctgttgttga gagttttctg aagcaagatt
    27661 atcgactcgg ttttacttat gagcagacaa tggagcttat tggtgaaaca attagataag
    27721 gttttaaaaa tcaaagataa atatcaacgg tctgttaaat taattgaagc acacatatta
    27781 acactaaaaa aaaaactctt tgtatcgaga tgtggaggca ttagataaaa ggattatata
    27841 cttcctgcaa ctggagaatg acttggaacc tataggcgct cagagtgtta gtcagctttt
    27901 caatacaaga cgtaagatcg ctatagtaaa aaagcatatt atccaatatc agtctgaacg
    27961 aattcttcta aagggaagaa ttgaagaaat tcaaaaagat attgatgagg caaatgcttc
    28021 taaaagaaaa ctgcttcata aagagagtaa aatatgtaaa cggattggct tgattaaaag
    28081 aaataacttt gccaaacagt tgatacttga tgagttatca caagaggata tgaagtatgg
    28141 cattagataa tataaaccta aattttagta gtgacaaaca gatagaaaaa tgtgagaaac
    28201 tatcttcaat agataatatt gatagtctcg ttttgaagaa gaagaggaag gttgaaattc
    28261 ctgagtactc tttaattgca tctaactatt ttactattga taagcacttt gaacataagc
    28321 atgataaagg agaaatttat agtggcatta aaaatgcgtt cgaacttaga aacgaacgag
    28381 cgacatattc tgatattcca gaatcaatgg ccattaaaga aaatattttg ataccagatc
    28441 aagatatcaa agcaagggaa aaaataaata tcggcgatat gagggggatc ttttcatata
    28501 ataagagtgg aaatgcagac aagaacttcg aaagaagtca tacttcttct gtaaaccctg
    28561 ataatctgct agaatctgat aatagaaatg gtcaaattgg tttaaaaaat catagcttgt
    28621 ctattgataa gaatattgct gacatcattt ctttactaaa tggaagtgtt gctaaatcat
    28681 ttgagctgcc tgtaatgaat aaaaatactg cagacataac cccatccatg tcattgcaag
    28741 aaaaatcaat agttgaaaat gataaaaatg tttttcaaaa aaatagtgaa atgacttacc
    28801 actttaaaca gtggggggct ggacattctg ttagtatttc agtggagtct ggttcttttg
    28861 ttctaaaacc gtcagatcaa tttgtaggaa ataaacttga cttaattttg aaacaagatg
    28921 ctgagggtaa ttacagattt gatagcagtc aacataataa ggggaataaa aataatagta
    28981 caggatataa tgaacagagt gaagaagaat gctaagaatt aaacattttg acgctaacga
    29041 aaaactacag attttatatg caaagcaact ctgcgagcgt ttttcgattc agacattcaa
    29101 aaataaattt acaggcagtg aaagtttagt cactcttatt tccttgtgtg gggattgggt
    29161 aattcgtatt gatacattat cttttttgaa aaaaaaatac gaggtatttt caggattttc
    29221 tacacaagaa tctttactgc atttatcaaa atgtgtcttt atagagtcat catctgtatt
    29281 ttcgattcca gaactgtctg ataagattac tttccggatc acgaatgaaa tccagtatgc
    29341 aactactggg agtcatttat gctgtttttc ctcttcttta ggtattattt attttgacaa
    29401 gatgccggta ttacgtaatc aagtttctct tgacttattg catcatcttt tagagttttg
    29461 cttaggttca tctaatgtaa ggctggctac tttaaaaaga attcgtactg gtgatataat
    29521 catagttcag aaactttata atttattatt gtgtaatcaa gttattattg gggattatat
    29581 tgtgaatgat aataatgagg caaaaattaa tctgtcagaa agtaatggtg agtcagatca
    29641 cacagaagtt tctttggcat tattcaatta tgatgatatc aatgtaaaag tggactttat
    29701 ccttttagaa aaaaagatga caatcaatga actaaaaatg tatgtagaaa acgaattatt
    29761 caagtttccc gatgacatag ttaaacatgt aaatattaaa gtaaatggtt ctttggttgg
    29821 gcatggggaa cttgtttcta ttgaggatgg ttatggtatc gagattagtt cttggatggt
    29881 aaaggagtaa tctcatgctg agtgatatgt ccctcatcgc tacactttct ttttttacgc
    29941 tattaccatt tttagttgct gctggtactt gttatataaa gttttctatt gtttttgtaa
    30001 tggtacgaaa tgcacttggt ttgcagcagg ttccatcaaa tatgactctc aatggtattg
    30061 cattgattat ggctttgttc gtgatgaaac ccattattga agctggttat gaaaattatc
    30121 taaatggccc gcaaaaattt gatacaatat cagatattgt ccgtttttct gattctggct
    30181 tgattgaata caagcaatac ttgaaaaagc atacagatct tgagttggca cgttttttcc
    30241 aaaggtctga agaagaaaat gctgatttaa agagtgcaga gaataatgat tattcattgt
    30301 tttccctctt gcctgcatat gcgctaagtg aaattaaaga tgcgttcaaa ataggttttt
    30361 atttatattt gccatttatt gttgttgatc ttgttatttc aagcatttta cttgcacttg
    30421 gtatgatgat gatgagtcca atcacaatat cagtaccaat aaaacttgta ttatttgttg
    30481 cgcttgatgg gtgggggatc ctgtctaagg ccttgattga acaatatatc aatgttcctg
    30541 cttagatgat ggaggtaatg tgtctgatat agtttatatg ggtaataagg ctctttattt
    30601 aatccttatc ttttccttat ggccagtagg tatagctacg gttattggat taactattgg
    30661 tttattacag acagtgactc aacttcaaga gcagacactt ccttttggta taaagcttat
    30721 aggtgtctca atatctttgc tacttctttc tggatggtat ggtgaggttt tattgtcttt
    30781 ttgtcatgaa ataatgtttt taattaagag tggggtttga tggacatttc aagctggttc
    30841 gaaagtattc atgtgttttt aatactcctg aacggcgttt tttttagatt ggctccatta
    30901 tttttctttc ttccattttt aaataacggt ataatttctc catctattag aatacctgtg
    30961 atttttcttg ttgcatcagg attaattact tctggtaagg tagacatagg ttcttctgtt
    31021 tttgaacatg tttatttcct tatgttcaag gaaataattg ttggcctcct tctctctttt
    31081 tgcttgtctc ttcccttttg gatatttcat gctgttggta gcattattga caaccagcgt
    31141 ggggcaacgc ttagtagttc aattgatcct gccaatggtg ttgatacgtc tgagttggca
    31201 aaatttttca atcttttttc tgcagttgta tttctataca gtggtggaat ggtctttatt
    31261 ttagaatcca tacaattgtc ttataatata tgcccgttat tttctcaatg ttctttccgt
    31321 gtctcaaata tcttaacatt tctgacttta ttggcaagtc aggctgttat tttagccagt
    31381 cctgttatga tagtattgtt actatcagaa gtattacttg gtgtattatc gagatttgct
    31441 ccgcagatga atgctttttc cgtatcatta actattaaaa gtttacttgc aatatttatt
    31501 attttcatct gttcttctac tatttacttt tctaaagttc aatttttcct cggtgaacat
    31561 aaatttttca caaatctatt tgttagataa aatattatgg caaataaaac agaaaagccg
    31621 acacctaaaa aactaaagga tgccgcaaaa aaaggacagt catttaaatt taaggattta
    31681 acgacagttg ttattattct ggtagggaca tttactataa tatcattctt ttccttaagt
    31741 gatgtaatgc tcttatacag atatgtaata attaatgact tcgaaattaa tgagggtaaa
    31801 tacttttttg cagtggttat tgtctttttt aagataattg gcttcccact ttttttctgt
    31861 gttctttcgg ctgtgttgcc aacattggtt caaacaaagt ttgttcttgc gactaaagct
    31921 atcaagattg atttttcagt attaaaccct gttaaagggt taaaaaaaat atttagtata
    31981 aagacaataa aagaattttt caaaagcatt ctgcttctta ttattctagc attaacaacc
    32041 tatttctttt ggattaatga ccgaaaaata attttttctc aggtgttttc tagtgttgat
    32101 ggcttatatc ttatttgggg ggggctgttt aaggatataa tattattttt cttagcattt
    32161 tctatttttg ttattattct tgactttgtg attgagttca ttttatacat gaaagatatg
    32221 atgatggata aacaggagat aaaaagagaa tatatagagc aagagggaca ctttgagaca
    32281 aagtcgagaa ggcgtgagtt gcatatcgag attctttcag agcagactaa atctgatata
    32341 cgtaattcaa aattagtggt aatgaacccg actcatattg caattggtat ttattttaat
    32401 ccagaaatag cgcctgcacc ttttatttct ctcattgaaa ctaaccagtg tgccttggct
    32461 gtcagaaaat atgcaaatga agttggtata ccaactgtgc gtgatgtgaa attagctaga
    32521 aaactatata aaacacatac aaaatatagt tttgttgatt ttgaacactt ggatgaagtc
    32581 ctacgtctta ttgtttggct tgagcaggtt gaaaacactc attaataagt aaaggagatg
    32641 tgttatatgg gagttaattt ctgtaataaa ataggtattg atcagtctga atttgaaata
    32701 gaatcttcca tcattaactc cattgctaat gaggtattga acccaatatc tttccttagc
    32761 aacaaggata taataaatgt tttactcaga aagatttcat ctgaatgtga cctggttaga
    32821 aaagacattt atcgttgtgc tcttgagttg gtcgttgaaa aaacacctga tgatttataa
    32881 tcattcataa taactctttt gctgatataa atatttttgt tgaagatatt tatgtagtca
    32941 caggatcaat tgtagaaaat tgttatgttt ttgttaggaa ctgaactaaa taatatatga
    33001 taagacagca aaaacgactg accataatcc ttcttttatt aggagttgat aagagagact
    33061 attcatcctg taatgttaaa actctgttat atagtattcg cgattatgca aagtctgtaa
    33121 atgatcatga gatactaacc gagagtaatc gtttattatc tcattgcatt tcagatagta
    33181 acggagcttt ctttaaaagt agtaaatacg ttccccttaa gtacttacgt aaaaggagaa
    33241 tagcacgaaa gataccaaat gattagcact ttgctagtaa gcttgctggt aaactatatt
    33301 gaccgttggg tttgttttga gactgtaatt taaattgtgt aattgcctgt ttttgatatg
    33361 tttactccaa caacggagac aggtaaatta tggacgaaaa gaagcttaaa gcccttgcgg
    33421 ctgaactggc taaaggcctc aaaactgagg ccgacctcaa tcagttttcc cgtatgctga
    33481 cgaaatatcc cggctcttaa aacgatagtg gctcaggctt tcatttttca gcgttcccca
    33541 gaag
//
LOCUS       DADMHM010000024        32835 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.025, whole genome shotgun sequence.
ACCESSION   DADMHM010000024 DADMHM010000000
VERSION     DADMHM010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 32835)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32835)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32835
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.025"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(187..2508)
                     /locus_tag="JN125_000965"
     CDS             complement(187..2508)
                     /locus_tag="JN125_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HAY8870823.1"
                     /translation="MMNDSFCRIIAGEIQARPEQVDAAVRLLDEGNTVPFIARYRKEI
                     TGGLDDTQLRNLETRLSYLRELEERRQAILKSISEQGKLTDDLAKAINATLSKTELED
                     LYLPYKPKRRTRGQIAIEAGLEPLADLLWSDPSHTPEVAAAQYVDADKGVADTKAALD
                     GARYILMERFAEDAALLAKVRDYLWKNAHLVSTVVSGKEEEGAKFRDYFDHHEPLSTV
                     PSHRALAMFRGRNEGVLQLSLNADPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRK
                     GVVSWTWRIKVLMHLETELMGTVRERAEDEAINVFARNLHDLLMAAPAGLRATMGLDP
                     GLRTGVKVAVVDATGKLVATDTIYPHTGQAAKAAMTVAALCEKHNVELVAIGNGTASR
                     ETERFYLDVQKQFPKVTAQKVIVSEAGASVYSASELAAQEFPDLDVSLRGAVSIARRL
                     QDPLAELVKIDPKSIGVGQYQHDVSQTQLARKLDAVVEDCVNAVGVDLNTASVPLLTR
                     VAGLTRMMAQNIVAWRDENGQFQNRQQLLKVSRLGPKAFEQCAGFLRINHGDNPLDAS
                     TVHPEAYPVVERILAATQQALKDLMGNSSELRNLKASDFTDEKFGVPTVTDIIKELEK
                     PGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISS
                     LSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTMRLDEQPGETNARRGGGNERPQ
                     NNRPAAKPRGREAQPAGNSAMMDALAAAMGKKR"
     gene            complement(2605..3117)
                     /gene="greB"
                     /locus_tag="JN125_000966"
     CDS             complement(2605..3117)
                     /gene="greB"
                     /locus_tag="JN125_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709179.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreB"
                     /protein_id="HAY8870824.1"
                     /translation="MRIIKQTKGINEMKTPLVTREGYEKLKQELNYLWREERPEVTKK
                     VTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAW
                     VEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEASW
                     YVNAIEYVKP"
     gene            3309..4028
                     /gene="ompR"
                     /locus_tag="JN125_000967"
     CDS             3309..4028
                     /gene="ompR"
                     /locus_tag="JN125_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018150685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator OmpR"
                     /protein_id="HAY8870825.1"
                     /translation="MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLL
                     TRESFHLMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDY
                     IPKPFNPRELLARIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMP
                     LTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAH
                     PRYIQTVWGLGYVFVPDGSKA"
     gene            4025..5377
                     /gene="envZ"
                     /locus_tag="JN125_000968"
     CDS             4025..5377
                     /gene="envZ"
                     /locus_tag="JN125_000968"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     EnvZ"
                     /protein_id="HAY8870826.1"
                     /translation="MRRLRFSPRSSFARTLLLIVTLLFASLVTTYLVVLNFAILPSLQ
                     QFNKVLAYEVRMLMTDKLQLEDGTQLVVPPAFRREIYRELGISLYSNEAAEEAGLRWA
                     QHYEFLSHQMAQQLGGPTEVRVEVNKSSPVVWLKTWLSPNIWVRVPLTEIHQGDFSPL
                     FRYTLAIMLLAIGGAWLFIRIQNRPLVDLEHAALQVGKGIIPPPLREYGASEVRSVTR
                     AFNHMAAGVKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEE
                     CNAIIEQFIDYLRTGQEMPMEMADLNAVLGEVIAAESGYEREIETALYPGSIEVKMHP
                     LSIKRAVANMVVNAARYGNGWIKLSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVR
                     GDSARTISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPVPVTRAQGTTKEG
                     "
     gene            complement(5453..7075)
                     /gene="pckA"
                     /locus_tag="JN125_000969"
     CDS             complement(5453..7075)
                     /gene="pckA"
                     /locus_tag="JN125_000969"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HAY8870827.1"
                     /translation="MRVNNGLTPQELEAYGISDVHDIVYNPSYDLLYQEELDPSLTGY
                     ERGVLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFWWADKGKGKNDNKPLSPETW
                     QHLKGLVTRQLSGKRLFVVDAFCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEEL
                     AGFKPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSM
                     MNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDD
                     GVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVREDGTIDFDDGSKTENTRV
                     SYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTADQTQYHFLSGFTAKLA
                     GTERGITEPTPTFSACFGAAFLSLHPTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRI
                     SIKDTRAIIDAILNGSLDNAETFTLPMFNLAIPTELPGVDTKILDPRNTYASPEQWQE
                     KAETLAKLFIDNFDKYTDTPAGAALVAAGPKL"
     gene            7453..9177
                     /locus_tag="JN125_000970"
     CDS             7453..9177
                     /locus_tag="JN125_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4153 domain-containing protein"
                     /protein_id="HAY8870828.1"
                     /translation="MDNVELSPATRWGMIATGLLQGLVCYLLIAWLAGKNHSWIVYGV
                     PATVAFSSVLLFSVISFKQKRLWGWLALVFIATTGMSGWLKWQTDGMNPWRAEKAIWD
                     FGCYLLLMAMLLLPWIQQSLRIRNGSSRYSYFYQSVWHNVLILLVIFLANGLTWLVLL
                     LWGELFKLVGIKFFNTLFFATDWFMYLTLGLVTALAVILARTQSRLIDSIQKLFTLIA
                     TGLLPLVSLLTLMFIITLPFTGLSAISRHISAAGLLLTLAFLQLILMAIVRDPQKASL
                     PWTGPLRCLIKTALLVAPLYVFVAAWALWLRVAQYGWTVDRLQGALAVLVLLVWSLGY
                     FVSIVWRNGQNPLVLQGKVNLAVSLLVLVILVLLNSPVLDSMRISVNSHMARYQSGKN
                     TPDQVTIYMLEQSGRYGRAALESLKSDAGFMKDPKRSRDLLMALDGEQHLQEQVSEKV
                     LAENVLIAPGSVKPDATFWSALIQDRYNVMTCIEKDACVLVEQDLNSDGQAERILFAF
                     NDDRVIVYGFDSDRKEWDALDMSLLPNEITKEKLLTAAKDGKLGTRPKAWRDLTVDGE
                     TLEINLSK"
     gene            complement(9312..10190)
                     /gene="hslO"
                     /locus_tag="JN125_000971"
     CDS             complement(9312..10190)
                     /gene="hslO"
                     /locus_tag="JN125_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417860.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HAY8870829.1"
                     /translation="MPQHDQLHRYLFENFAVRGELVTVSETLQQILENHDYPQPVKNV
                     LAELLVATSLLTATLKFDGDITVQLQGDGPMNLAVINGNNNQQMRGVARVQGEIPENA
                     DLKTLVGNGYVVITITPSEGERYQGVVGLEGDTLAACLEDYFMRSEQLPTRLFIRTGD
                     VDGKPATGGMLLQVMPAQNAQQDDFDHLATLTETIKTEELLTLPANEVLWRLYHEEEV
                     TVYDPQDVEFKCTCSREHCADALKTLPDEEVDSILAEDGEIDMHCDYCGNHYLFNAMD
                     IAEIRNNASPADPQVH"
     gene            complement(10215..10616)
                     /gene="hslR"
                     /locus_tag="JN125_000972"
     CDS             complement(10215..10616)
                     /gene="hslR"
                     /locus_tag="JN125_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated heat shock protein Hsp15"
                     /protein_id="HAY8870830.1"
                     /translation="MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK
                     PSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMAMAR
                     KLNALTMPHPDRRPDKKERRDLLRFKHGDSE"
     gene            complement(10627..11295)
                     /gene="yrfG"
                     /locus_tag="JN125_000973"
     CDS             complement(10627..11295)
                     /gene="yrfG"
                     /locus_tag="JN125_000973"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312268.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMP/IMP nucleotidase"
                     /protein_id="HAY8870831.1"
                     /translation="MHINIAWQDVDTVLLDMDGTLLDLAFDNYFWQKLVPETWGAKNG
                     VTPQEAMEYMRQQYHDVQHTLNWYCLDYWSEQLGLDICAMTTEMGPRAVLREDTIPFL
                     EALKASGKQRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWHAVAE
                     ATGLKAERTLFIDDSEAILDAAAQFGIRYCLGVTNPDSGIAEKQYQRHPSLNDYRRLI
                     PSLM"
     gene            complement(11360..13495)
                     /gene="igaA"
                     /locus_tag="JN125_000974"
     CDS             complement(11360..13495)
                     /gene="igaA"
                     /locus_tag="JN125_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular growth attenuator protein IgaA"
                     /protein_id="HAY8870832.1"
                     /translation="MSTIVIFLAALLACSLLAGWLIKVRSRRRQLPWTNAFADAQTRK
                     LTPEERSAVENYLESLTQVLQVPGPTGASAAPISLALNAESNNVMMLTHAITRYGIST
                     DDPNKWRYYLDSVEVHLPPFWEQYINDENTVELIHTDSLPLVISLNGHTLQEYMQETR
                     GYALQPVPSTQASIRGEESEQIELLNIRKETHEEYALSRPRGLREALLIVASFLMFFF
                     CLITPDVFVPWLAGGALLLLGAGLWGLFAPPAKSSLREIHCLRGTPRRWGLFGENDQE
                     QINNISLGIIDLVYPAHWQPYIAQDLDQQTDIDIYLDRHVVRQGRYLSLHDEVKNFPL
                     QHWLRSTIIAAGSLLVLFMLLFWIPLDMPLKFTLSWMKGAQTIEATSVKQLADAGVRV
                     GDTLRISGTGMCNIRTSGTWSAKTNSPFLPFDCSQIIWNDARSLPLPESELVNKATAL
                     TEAVNRQLHPKPEDESRVSASLRSAIQKSGMVLLDDFGDIVLKTADLCSAKDDCVRLK
                     NALVNLGNSKDWDALVKRANAGKLDGVNVLLRPVSAESLDNLVATSTAPFITHETARA
                     AQSLNSPAPGGFLIVSDEGSDFVDQPWPSASLYDYPLQEQWNAFQKLAQMLMHTPFNA
                     EGIVTKIFTDANGTQHIGLHPIPDRSGLWRYLSTTLLLLTMLGSAIYNGVQAWRRYQR
                     HRTRMMEIQAYYESCLNPQLITPSESLIE"
     gene            13820..14380
                     /gene="nudE"
                     /locus_tag="JN125_000975"
     CDS             13820..14380
                     /gene="nudE"
                     /locus_tag="JN125_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP compounds hydrolase NudE"
                     /protein_id="HAY8870833.1"
                     /translation="MSKSLQKPTILNVETVARSRLFTVESVDLEFSNGVRRVYERMRP
                     TNREAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGF
                     GANDLTFLKKLSMAPSYFSSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLE
                     DPDFNEARNVSALFLVREWLKGQGRV"
     gene            complement(14545..17097)
                     /gene="mrcA"
                     /locus_tag="JN125_000976"
     CDS             complement(14545..17097)
                     /gene="mrcA"
                     /locus_tag="JN125_000976"
                     /EC_number="2.4.1.129"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312265.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase/peptidoglycan
                     DD-transpeptidase MrcA"
                     /protein_id="HAY8870834.1"
                     /translation="MKFVKYFLILAVCCILLGAGSIYGLYRYIEPQLPDVATLKDVRL
                     QIPMQIYSADGELIAQYGEKRRIPVTLDQIPPEMVKAFIATEDSRFYKHHGVDPVGIF
                     RAASVALFSGHASQGASTITQQLARNFFLSPERTLMRKIKEVFLAIRIEQLLTKDEIL
                     ELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLTLNEMAVIAGLPKAPSTFNPLYSMDRA
                     VARRNVVLSRMLDEGYITQQQFDQTRTEAINANYHAPEIAFSAPYLSEMVRQEMYNRY
                     GESAYEDGYRIYTTITRKVQQAAQQAVRNNVLDYDMRHGYRGPANVLWKVGESAWDNN
                     KITDTLKALPTYGPLLPAAVTSANPQGATAMLADGSTVALSMEGVRWARPYRSDTQQG
                     PTPRKVTDVLQTGQQIWVRQVGDAWWLAQVPEVNSALVSINPQNGAVMALVGGFDFNQ
                     SKFNRATQALRQVGSNIKPFLYTAAMDKGLTLASMLNDVPISRWDAGAGSDWQPKNSP
                     PQYAGPIRLRQGLGQSKNVVMVRAMRAMGVDYAAEYLQRFGFPAQNIVHTESLALGSA
                     SFTPMQVARGYAVMANGGFLVDPWFISKIENDQGGVIFEAKPKVACPECDIPVIYGDT
                     QKSNVLENNDVEDVAISREQQNVSVPMPQLEQANQALVAKTGAQEYAPHVINTPLAFL
                     IKSALNTNIFGEPGWQGTGWRAGRDLQRRDIGGKTGTTNSSKDAWFSGYGPGVVTSVW
                     IGFDDHRRNLGHTTASGAIKDQISGYEGGAKSAQPAWDAYMKAVLEGVPEQPLTPPPG
                     IVTVNIDRSTGQLANGGNSREEYFIEGTQPTQQAVHEVGTTIIDNGEAQELF"
     gene            17217..17996
                     /gene="hofM"
                     /locus_tag="JN125_000977"
     CDS             17217..17996
                     /gene="hofM"
                     /locus_tag="JN125_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417854.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein HofM"
                     /protein_id="HAY8870835.1"
                     /translation="MAFKIWQIGLHLQQQEAVAVAIVRGAKECFLQRWWRLPLENDII
                     KDGRIVDAQQLAKTLLPWSRELPQRHHIMLAFPASRTLQRSFPRPSMSLGEREQTAWL
                     SGTMARELDMDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLRVHVSAITPD
                     ASALQRFLPFLPSHQQCLAWRDNEQWLWATRYSWGRKLAVGMTSAKELAAALFVDPDS
                     VAICGEGGFDPWEAVSVRQPLLPPPGGDFAIALGLALGKAY"
     gene            17996..18535
                     /locus_tag="JN125_000978"
     CDS             17996..18535
                     /locus_tag="JN125_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PilN domain-containing protein"
                     /protein_id="HAY8870836.1"
                     /translation="MNPPINFLPWRPQRRTAFLRFWLLMFVAPLLLAVGITLILRLTG
                     SAEARIDAVLLQAEQQLARSLQITKPRLLEQQQLREQRSQRQRQRQFTRDWQSALEAL
                     AALLPEHAWLTTISWQQGTLEIKGLTTSITALNALETSLRQDASFHLNQRGATQQDAQ
                     GRWQFEYQLTRKVSDEHVL"
     gene            18519..18959
                     /gene="hofO"
                     /locus_tag="JN125_000979"
     CDS             18519..18959
                     /gene="hofO"
                     /locus_tag="JN125_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein HofO"
                     /protein_id="HAY8870837.1"
                     /translation="MNMFFDWWFATSPRLRQFCWAFWLLMLVTLIFLSSTHHEERDAL
                     IRLRASHHQQWATLYRLVDTTPFSEEKTLPFSPLDFQLPGAQLVSWHPSAQGGELALK
                     TLWEAVPSAFTRLAERNVSVSRFSLSVEGDDLLFTLQLETPHEG"
     gene            18949..19353
                     /gene="hofP"
                     /locus_tag="JN125_000980"
     CDS             18949..19353
                     /gene="hofP"
                     /locus_tag="JN125_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417851.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein HofP"
                     /protein_id="HAY8870838.1"
                     /translation="MRVKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMV
                     GRGERIIGVIKDGQKKWRRVQQNDVLENGWTILQLTPDVLTLGTGTNCEPPQWLWQRQ
                     GDTNEAMDSRTTVDADTRRTGGKAAKSDADGG"
     gene            19265..20503
                     /gene="hofQ"
                     /locus_tag="JN125_000981"
     CDS             19265..20503
                     /gene="hofQ"
                     /locus_tag="JN125_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA uptake porin HofQ"
                     /protein_id="HAY8870839.1"
                     /translation="MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQE
                     KLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLITRQEGNILSVHSIAWQNNNIA
                     RQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMIVDKRTNRLLLRDN
                     KTALSALEQWVAQMDLPVGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT
                     LGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIK
                     QGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQA
                     DGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDG
                     KEYERRELVVFITPRLVSSE"
     gene            20904..21425
                     /gene="aroK"
                     /locus_tag="JN125_000982"
     CDS             20904..21425
                     /gene="aroK"
                     /locus_tag="JN125_000982"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004709337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase AroK"
                     /protein_id="HAY8870840.1"
                     /translation="MAEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG
                     ADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVY
                     LETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVTIRTDDQSAK
                     VVANQIIHMLESN"
     gene            21482..22570
                     /gene="aroB"
                     /locus_tag="JN125_000983"
     CDS             21482..22570
                     /gene="aroB"
                     /locus_tag="JN125_000983"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HAY8870841.1"
                     /translation="MERIVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTNET
                     LAPLYLDKVRGVLEQAGVNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVAL
                     GGGVVGDLTGFAAASYQRGVRFIQVPTTLLSQVDSSVGGKTAANHPLGKNMIGAFYQP
                     ASVVVDLDCLKTLPPRELVSGLAEVIKYGIILDGAFFNWLEENLDALLRLDGPAMAYC
                     IRRCCELKAEVVAADERETGLRALLNLGHTFGHAIEAEMGYGNWLHGEAVAAGMVMAA
                     RTSERLGQFSSAETQRIITLLKRAGLPVNGPREMSAQAYLPHMLRDKKVLAGEIRLIL
                     PLAIGKSEVRSGVSHELVLNAIADCQSA"
     gene            22662..23948
                     /gene="damX"
                     /locus_tag="JN125_000984"
     CDS             22662..23948
                     /gene="damX"
                     /locus_tag="JN125_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein DamX"
                     /protein_id="HAY8870842.1"
                     /translation="MDEFKPEDELKPDPSDRRTGRSRQSSERSERTERGEPQINFDDI
                     ELDDTDDRRPTRAQKERNEEPEIEEEIDESEDETVDEERVERRPRKCKKAASKPASRQ
                     YMMMGVGILVLLLLIIGIGSALKAPSTSSSDQTASGEKSIDLAGNATDQANGVQPAPG
                     TTSAENTQQDVSLPPISSTPTQGQTPAATDGQQRVEVQGDLNNALTQPQNQQQLNNVA
                     VNSTLPTEPATVAPVRNGNASRDTAKTQTAERPSTTRLARQQAVIEPKKPQATVKTEP
                     KPVAQTPKRTEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGKTA
                     GNVGSLKSAPSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGV
                     YASKEEAKKAVSTLPADVQAKNPWAKPLRQVQADLK"
     gene            24055..24891
                     /gene="dam"
                     /locus_tag="JN125_000985"
     CDS             24055..24891
                     /gene="dam"
                     /locus_tag="JN125_000985"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine-specific DNA-methyltransferase"
                     /protein_id="HAY8870843.1"
                     /translation="MKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLN
                     TDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQ
                     DPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFF
                     YCESYADSMARADDASVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVE
                     RHIPVLISNHDTMLTREWYQRAKLHVVKVRRSISSNGGTRKKVDELLALYKPGVVSPA
                     KK"
     gene            24909..25586
                     /gene="rpe"
                     /locus_tag="JN125_000986"
     CDS             24909..25586
                     /gene="rpe"
                     /locus_tag="JN125_000986"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HAY8870844.1"
                     /translation="MKQYLIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVP
                     NLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASEHVDRT
                     LQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLRE
                     VRRRIDESGFDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRSE
                     LAKVSHE"
     gene            25579..26337
                     /gene="gph"
                     /locus_tag="JN125_000987"
     CDS             25579..26337
                     /gene="gph"
                     /locus_tag="JN125_000987"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HAY8870845.1"
                     /translation="MNKFEDIRGVAFDLDGTLVDSAPGLAAAVDMALYALELPVAGEE
                     RVITWIGNGADVLMERALAWARQERATLRKTMGKPPVDDDIPAEEQVRILRKLFDRYY
                     SEVAEEGTFLFPHVADTLGALQAKGLPLGLVTNKPTPFVAPLLEALDIAKYFSVVIGG
                     DDVQNKKPHPDPLLLVAERMGIAPQQMLFVGDSRNDIQAAKAAGCPSVGLTYGYNYGE
                     AIDLSQPDVIYQSINDLLPALGLPHSENQESKND"
     gene            26330..27334
                     /gene="trpS"
                     /locus_tag="JN125_000988"
     CDS             26330..27334
                     /gene="trpS"
                     /locus_tag="JN125_000988"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HAY8870846.1"
                     /translation="MTKPIVFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQ
                     HAITVRQDAQKLRKATLDTLALYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFG
                     ELSRMTQFKDKSARYAENINAGLFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDI
                     AQRFNALYGEIFKVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVVK
                     KIKRAVTDSDEPPVVHYDVQNKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGE
                     VADAVSGMLTELQERYHRFRNDEAFLQQVMKDGAEKASVHASRTLKAVYEAIGFVAKP
                     "
     gene            27603..28508
                     /locus_tag="JN125_000989"
     CDS             27603..28508
                     /locus_tag="JN125_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709156.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870847.1"
                     /translation="MRRTFIKKEGVVITTLARYLLGEKCGNRLKTIDELATECRSSVG
                     LTQAVLKTLESSGAIRIERRGRNGSYLVEMDNKALLSHVDINNVVCAMPLPYTRLYEG
                     LASGLKAQFDGIPFYYAHMRGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALE
                     LGPHTYVGEHQLICRKGESGNVKRVGLDSRSADQKIMTDVFFGDSDVERVDLSYHESL
                     QRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLL
                     RAVVDKHALLAHQQRVVSGEQEPSY"
     gene            28525..28887
                     /locus_tag="JN125_000990"
     CDS             28525..28887
                     /locus_tag="JN125_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417841.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
                     /protein_id="HAY8870848.1"
                     /translation="METRLNLLCEAGVIDKDICKGMMQVVNVLETECHLPVRSEQGTM
                     AMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVVQLHQVLLKEFALEVNPCEE
                     GYLLANLYGLWMAANEEV"
     gene            28971..30134
                     /locus_tag="JN125_000991"
     CDS             28971..30134
                     /locus_tag="JN125_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhfX family PLP-dependent enzyme"
                     /protein_id="HAY8870849.1"
                     /translation="MFVEALKRQNPALISAALSLWQQGKIAPDSWVIDVDQVLENGKR
                     LIETARLYGIELYLMTKQFGRNPWLAEKLLALGYSGIVAVDYKEARVMRRAGLSVAHQ
                     GHLVQIPCHQVADAVEQGTDVITVFTLDKAREVSAAAVKAGRVQFVLLKVYSDDDFLY
                     PGQESGFVQHSLHEVVAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLIQAR
                     DQLAKSGIALEQLNAPSATSCTSLPLLAQYGVTHAEPGHALTGTIPANQQGDQSERIA
                     MLWLSEISHHFRGDSYCYGGGYYRRGHAQHALVFTPENQKITETNLKTVDDSSIDYTL
                     SLAGEFPVSSAVVLCFRTQIFVTRSDVVLVSGIHRGEPKIVGRYDSLGNSLGA"
     gene            30134..31360
                     /locus_tag="JN125_000992"
     CDS             30134..31360
                     /locus_tag="JN125_000992"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HAY8870850.1"
                     /translation="MARFVVLVIDSFGVGAMKDVTLVRPQDAGANTCGHILSQLPHLQ
                     LPTLEKLGLINALGYAPGDMQPSDSATWGVAELQHEGGDTFMGHQEILGTRPLPPLRM
                     PFCDVIDRVEQALVSAGWQVERRGDELQFLWVNQAVAIGDNLEADLGQVYNITANLSV
                     ISFDDAIKIGRIVREQVQVGRVITFGGLLTDSQRILDAAESKEERFIGINAPRSGAYD
                     NGFQVVHMGYGVDKKVQVPQKLYEAGVPTVLVGKVADIVSNPYGVSWQNLVDSQRIMD
                     ITLDEFNTHPTAFICTNIQETDLAGHAEDVARYAERLQVVDRNLARLVDAMQPDDCLV
                     VMADHGNDPTIGHSHHTREVVPLLVYQQGLAATQLGVRTTLSDVGATVCEFFRAPPPQ
                     NGRSFLSSLRFAGDTL"
     gene            31357..32235
                     /locus_tag="JN125_000993"
     CDS             31357..32235
                     /locus_tag="JN125_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotriesterase-related protein"
                     /protein_id="HAY8870851.1"
                     /translation="MSFDPTGYTLAHEHLHIDLSGFKNNVDCRLDQYAFICQEMNDLM
                     TRGVRNVIEMTNRYMGRNAQFMLGVMRETGINVVACTGYYQDAFFPEHVVTRSVQELA
                     QEMVDEIEQGIDGTELKAGLIAEIGSSEGKITPLEEKIFIAAALAHNQTGRPISTHTS
                     FSTMGLEQLALLQAHGVDLSRVTVGHCDLKDNLDNILKMIDLGAYVQFDTIGKNSYYP
                     DEKRIAMLHALRDRGLLNRVMLSMDITRRSHLKANGGYGYDYLLTTFIPQLRQSGFSQ
                     ADVDVMLRETPYQFFQ"
     gene            32246..32599
                     /locus_tag="JN125_000994"
     CDS             32246..32599
                     /locus_tag="JN125_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417837.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2620 domain-containing protein"
                     /protein_id="HAY8870852.1"
                     /translation="MKKIGVAGLQREQIKKTIEATAPGSFEVFIHNDMEAAMKVKSGQ
                     LDYYIGACNTGAGAALSIAIAVIGYNKSCTIAKPGIKAKDEHIAKMIAEGKVAFGLSV
                     EHVEHAIPMLINHLK"
     gene            32611..>32835
                     /locus_tag="JN125_000995"
     CDS             32611..>32835
                     /locus_tag="JN125_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870853.1"
                     /translation="MDLYIQIIVVACLTGMTSLLAHRSAAVFHDGIRPILPQLIEGYM
                     NRREAGSIAFGLSIGFVASVGISFTLKTGLL"
BASE COUNT         7634 a         8252 c         8999 g         7950 t
ORIGIN      
        1 ggctaatgtt taattaaggt ttcagttgtt aatgaagtga taaatattgc cggaatatat
       61 tatgagtttg gttgtggaat aaaaaggccg gagatattct ccggcacttt tatgtcaggc
      121 aaggcgttcg ttgccagatg cggcgtgaac gccttatcgc gcaggtttag gggccagtcc
      181 gggcgtttaa cgttttttgc ccattgccgc cgccagcgca tccatcatcg cgctattacc
      241 ggcaggctgc gcttcacgac cgcgtggttt ggctgccggg cggttgtttt gcgggcgttc
      301 attaccgccg ccgcgacggg cgttggtttc gccaggctgc tcgtccagac gcatagtcag
      361 ggcgatacgt ttacgctgaa gatccacttc cagcactttc accttcacaa tgtcgcccgc
      421 tttcaccacg gtatgcggat cttccacaaa cttgttcgac aatgaagaga tgtgaaccag
      481 gccgtcctga tgcacgccga tatcgacaaa cgcgccaaag ttggtgacgt tggtcaccgc
      541 accttcgagg atcatacccg gttgcaggtc gttcattgtc tcgacgccat cggcaaactg
      601 agcggtttta aattccggac gcggatcgcg acccggtttt tccagctctt tgatgatgtc
      661 agttactgtc ggcacaccga atttttcatc agtaaagtca gacgctttca ggttacgcag
      721 ttcgctgctg ttacccatca gatctttcag tgcctgctgt gttgctgcca gaatgcgttc
      781 caccaccgga taggcttccg ggtggacggt agaagcatcc agcgggttat caccgtggtt
      841 aatgcgcaag aagcccgcgc actgctcgaa ggctttcggc cccagacggc tgactttcag
      901 cagttgctga cggttctgga actggccgtt ctcatcgcgc caggccacga tgttttgcgc
      961 catcatgcgc gtcaggcccg ccacgcgggt taacagcgga acagaagcag tgttgagatc
     1021 gacgccaacg gcgtttacgc agtcttctac tactgcgtcc agtttgcggg ccagttgcgt
     1081 ctggctgacg tcatgctgat actgacctac gccgatagat ttcggatcga ttttcaccag
     1141 ctccgccagc ggatcctgca aacggcgggc gatagacacc gcgccacgca gcgaaacgtc
     1201 gagatccggg aactcctgcg ctgccagctc ggaagctgag taaaccgacg cgccagcttc
     1261 gctgacgatc actttctgtg cggtcacttt cgggaactgc ttctgcacgt cgagatagaa
     1321 acgttcagtt tcgcgggaag ctgtaccgtt gccgatcgcc accagttcaa cgttatgttt
     1381 ttcacacaag gcagcaacgg tcatcgctgc ttttgcggct tgtccggtgt gcgggtaaat
     1441 ggtatcggtc gctaccagtt tgccagtggc atcgaccacc gccactttta ccccagtacg
     1501 cagacccgga tcgaggccca tcgttgcacg cagtccggca ggggccgcca tcagcagatc
     1561 gtgcaggtta cgggcaaaga cgttgattgc ttcatcttcc gcgcgttcgc gcacggtacc
     1621 catcagttcg gtttccagat gcatcagcac cttgatgcgc caggtccagc tcactacgcc
     1681 tttgcgccag ctatccgccg gggcattgtt caggcgcagg ccaaggtgat ccatgatgat
     1741 ttgctcgcaa tagctctctt tgggcggctc atcgaactgc ggatcggcat tcagcgaaag
     1801 ctggagtacg ccttcgttac gcccacggaa catcgccagc gcgcggtgag aaggcaccgt
     1861 ggacaacggt tcgtgatgat cgaaatagtc gcggaatttc gccccttcct cttctttacc
     1921 gctcaccacc gtagaaacca aatgcgcgtt cttccacaga taatcacgca ctttcgccag
     1981 cagcgcggca tcttcggcaa accgttccat caggatatag cgcgcgccat ccagcgcggc
     2041 tttggtatct gccacgcctt tatcggcatc aacatattgt gcagcggcga cttctggcgt
     2101 gtgtgacgga tcgctccaca gcaggtcagc caacggctca agccctgctt caatggcgat
     2161 ttgcccgcgg gtgcggcgtt taggtttgta gggcaggtag aggtcttcga gttcggtttt
     2221 gcttagggtg gcgttgatgg ccttcgccag atcatcggtg agtttgcctt gctcggaaat
     2281 ggacttgagg atcgcctgac gtctctcttc cagctcgcgc agatagctca gacgcgtttc
     2341 cagattacgc agctgcgtgt catccagacc gccggtgatt tccttacgat aacgtgcgat
     2401 aaacggcacg gtattccctt cgtcaagcag gcgaacggca gcgtcaacct gttccgggcg
     2461 cgcctgaatt tcacccgcaa taatgcggca gaacgaatca ttcatcatgg tttgagttca
     2521 tcttttcgga tcaaaaatca ggggatagtt atacggactg gctggcaaaa atgccagcca
     2581 tcggcaggag gttaagactc ttccttacgg tttcacgtac tcgatagcat taacatacca
     2641 gctcgcttcc ccggcagggg tattcaccac cgccagatcg ccgacttctt ttttcagcaa
     2701 tgcgcgggcc atcggggaat cgatagagat gtaatcttta cggccaaaaa tttcatcgta
     2761 gccgacaata cggaaacggt gagtcacgcc atcgtcgttt tcaatctcca cccacgcgcc
     2821 aaaaaagact ttgccttcct gctgagggga gtaatcgacg attttgagat tttccatgca
     2881 tttagtgaga tagcgcacgc gacggtcgat ttcacgcaga cgctttttat tatactgata
     2941 gtcagcattt tcgctgcggt cgcccagact tgcggcccag gtcacctttt ttgtgacctc
     3001 cgggcgttct tcacgccaga gataattaag ctcttgtttg agtttttcat acccttcccg
     3061 ggtaaccagg ggcgttttca tctcgttgat tccctttgtc tgtttgataa tgcgcacatt
     3121 gggtataacg tgatcatatc aacagaatca ataatgtttc gccgaataaa ttgtatactt
     3181 aagctgctgt ttaatatgct ttgtaacaat ttaggctgaa attcatacca gatttagctg
     3241 gtgacgaacg tgagcttttt taagaataca cgcttacaaa ttgttgcgaa cctttgggag
     3301 tacaaacaat gcaagagaac tacaagattc tggtggtcga tgacgacatg cgcctgcgtg
     3361 cgctgctgga acgttatctc accgaacaag gcttccaggt tcgaagcgtc gctaatgcag
     3421 aacagatgga tcgcctgctg actcgtgaat ctttccatct tatggtactg gatttaatgt
     3481 tacctggtga agatggcttg tcgatttgcc gacgtcttcg tagtcagagc aacccgatgc
     3541 cgatcattat ggtgacggca aaaggggaag aagtggaccg tatcgtaggc ctggagattg
     3601 gcgctgacga ctacattcca aaaccgttta acccgcgtga actgctggcc cgtattcgtg
     3661 cggtgctgcg tcgtcaggcg aacgaactgc caggcgcacc gtcacaggaa gaggcggtaa
     3721 ttgctttcgg taagttcaaa cttaacctcg gtacgcgcga aatgttccgc gaagatgagc
     3781 cgatgccgct caccagcggt gagtttgcgg tactgaaggc actggtcagc catccgcgtg
     3841 agccgctctc ccgcgataag ctgatgaacc ttgcccgtgg tcgtgaatat tccgcaatgg
     3901 aacgctccat cgacgtgcag atttcgcgtc tgcgccgcat ggtagaagaa gatccagcgc
     3961 atccgcgtta cattcagacc gtttggggcc tgggctacgt ctttgtaccg gacggctcta
     4021 aagcatgagg cgattgcgct tctcgccacg aagttcattt gcccgtacgt tattgctcat
     4081 cgtcaccttg ctgttcgcca gcctggtgac gacttatctg gtggtgctga acttcgcgat
     4141 tttgccgagc ctccagcagt ttaataaagt cctcgcgtac gaagtgcgta tgttgatgac
     4201 cgacaaactg caactggagg acggcacgca gttggttgtg cctcccgctt tccgtcggga
     4261 gatctaccgt gagctgggga tctctctcta ctccaacgag gctgccgaag aggcaggtct
     4321 gcgttgggcg caacactatg aattcttaag ccatcagatg gcacagcaac tgggcggccc
     4381 gacggaagtg cgcgttgagg tcaacaaaag ttcgcctgtc gtctggctga aaacctggct
     4441 gtcgcccaat atctgggtac gcgtgccgct gaccgaaatt catcagggcg atttctctcc
     4501 gctgttccgc tatacgctgg cgattatgct attggcgata ggcggggcgt ggctgtttat
     4561 tcgtatccag aaccgaccgt tggtcgatct cgaacatgct gctttgcagg tcggtaaagg
     4621 gattattcca ccgccgctgc gtgaatatgg cgcgtccgag gtacgttcgg ttacccgcgc
     4681 ctttaaccat atggcggctg gtgttaagca actggcggat gaccgcacgt tgctgatggc
     4741 gggggtaagt catgacttac gcacgccgct gacgcgtatt cgcctggcga ccgagatgat
     4801 gagcgaacag gatggctacc tggccgaatc gatcaataaa gatatcgaag agtgcaacgc
     4861 catcattgag cagtttatcg actacctgcg caccgggcag gagatgccga tggaaatggc
     4921 ggatctcaac gcagtactcg gtgaggttat tgctgccgaa agtggctatg agcgggaaat
     4981 tgaaaccgcg ctttaccccg gcagcattga agtgaaaatg cacccgctgt cgatcaaacg
     5041 cgcggtggcg aatatggtgg tcaacgccgc ccgttacggc aatggctgga tcaaactcag
     5101 cagcgggacg gagccgaatc gcgcctggtt ccaggtggaa gatgacggtc cgggaattgc
     5161 gccggaacaa cgtaagcacc tgttccagcc gtttgtccgc ggcgacagtg cacgcaccat
     5221 tagcggcacg ggattagggc tggcaattgt gcagcgtatc gtggataacc ataacgggat
     5281 gctggagctt ggcaccagcg agcggggcgg gctttccatt cgcgcctggc tgccagtgcc
     5341 ggtaacgcgg gcgcagggca cgacaaaaga agggtaaata aacgggaggc gaaggtgcct
     5401 cccgttttgc tttctataag atactggata gatattctcc agcttcaaat cattacagtt
     5461 tcggaccagc cgctaccagc gcggcacccg caggggtgtc ggtgtattta tcgaagttgt
     5521 cgataaacag tttcgccagg gtttcggctt tttcctgcca ctgttccgga gaagcgtagg
     5581 tgttacgcgg atcgagaatc ttcgtgtcta cgcccggcag ttcggttggg atcgccaggt
     5641 taaacatcgg cagagtgaag gtttctgcat tatccagcga accgttgagg atggcgtcga
     5701 taatggcgcg ggtatcttta atcgagatac gtttgcctgt gccgttccag ccagtgttaa
     5761 ccagataagc ctgcgcgccc gccgcctgca tacgtttcac cagcacttct gcgtactgag
     5821 tcgggtgcag cgacaggaat gccgcgccga agcaagcgga gaaggttggc gtcggttcgg
     5881 tgatgccacg ctcagtaccg gccagtttgg cggtgaagcc agagaggaag tgatactggg
     5941 tttgatcggc agtcaggcga gaaaccggcg gcaacacgcc gaaagcatca gcagtcagga
     6001 agataacctt agtcgcgtgg cccgctttgg aaaccggctt aacgatgtta tcgatgtgat
     6061 agattggata agaaacgcgg gtgttctcgg tttttgaacc atcatcaaag tcgatagtgc
     6121 catcttcacg cacggtgacg ttttccagca gcgcatcacg acggatagcg ttgtagattt
     6181 caggttccgc ttctttcgac agtttgatag tttttgcgta gcagccgcct tcgaaattaa
     6241 acacgccgtc atcgtcccag ccgtgttcgt catcgccaat caggcggcgt ttcgggtcgg
     6301 tggaaagggt ggttttaccg gtgccggaaa ggccgaagaa caccgcaaca tcgcctttct
     6361 cgccaacgtt ggcggagcag tgcatagaag cgataccttt cagcggcagc aggtagttca
     6421 tcatcgagaa catccctttc ttcatttcgc cgccgtacca ggtgccgcca atcagctgca
     6481 tgcgctcggt caggttaaac gccacgaagt tttcggagtt cagaccctgt tctttccact
     6541 gcgggttagt gcacttcgcg ccgttcataa cgataaagtc tggtttgaaa cctgccagct
     6601 cttcatcgct cgggcgaata aacatgtttt tgacaaaatg cgcctgccag gccacttcgg
     6661 tgatgaaacg gacggaaaga cgagtatccg ggttcgcacc acagaaagcg tcgacaacga
     6721 acagacgttt gccggaaagc tgcctggtca ccaggccttt cagatgctgc caggtttccg
     6781 gagagagagg tttgttgtcg ttcttacctt tgcctttgtc tgcccaccag aaagtatcgc
     6841 gagtggtatc gtcacggacg atatacttat cttttggtga acgaccggtg aagatcccgg
     6901 tatcgacggc aacggcaccc agattagtta acaccccgcg ctcataacct gtcaggctcg
     6961 gatcgagctc ttcctgatac agcaggtcgt agcttgggtt gtaaacgata tcatgtacgt
     7021 cactgatacc ataagcctcg agttcttgcg gggtcaaacc attgttaacg cgcatttcac
     7081 tgctccttag ccaatatgta ttgcctgaat agtaaagtct ttttggggtg ttaaccgcga
     7141 caaggctcat agatttacgt atctggagaa attcatattt gacaaaaaac tccgtgattc
     7201 ctgtcacgaa acggttgcta ttatcgcaga aatagcattt taggtgtgga aaatgttctc
     7261 aaaaggttaa atcttggttt atatggcggg aatattgtga gtggaatcgc attccttaat
     7321 gaaattgatg caaattcaat cggtaaagta tcgattcacc acgctaactt tttttgatta
     7381 ttttctgaaa aaagcaaaat actactgccc ggatgcgata attaacccac cttttgattc
     7441 tggataacca acatggataa cgttgaactt tcaccggcaa cacgctgggg gatgattgct
     7501 accggattac ttcaggggct ggtttgctac ctgttgatcg cctggcttgc cggaaaaaat
     7561 cacagttgga ttgtttatgg cgtgcctgcg accgttgcgt tttcatccgt tttactcttc
     7621 tccgtgatct cttttaaaca gaagcgcctt tggggatggc tggcgctggt gtttattgcc
     7681 acgacaggga tgagcggttg gctgaagtgg caaactgatg gcatgaaccc ctggagagct
     7741 gaaaaggcga tttgggattt tggctgctat ctgctgttga tggcaatgtt gttgctaccg
     7801 tggatacaac aaagccttcg tatccgcaat ggcagtagcc gctatagcta cttttaccag
     7861 tcagtatggc ataacgtact tatattactg gtgatttttc tcgccaatgg cctgacgtgg
     7921 ctggtgcttt tactgtgggg tgagttgttt aaacttgttg gcatcaagtt tttcaatacg
     7981 ctcttttttg caaccgactg gtttatgtat cttacattag gtctggttac cgcactggcg
     8041 gtgattctcg cgcgcacaca gtcacgttta atcgactcta ttcaaaagtt gttcacgtta
     8101 atcgccacgg ggttgctgcc gttagtatca ttgctaaccc tgatgtttat catcactctg
     8161 ccgtttacgg gcctgagcgc gatttctcgc cacatctccg ccgccgggtt gctgttaacg
     8221 ctggcctttt tgcaattgat cttaatggct attgtccgcg atccgcaaaa agcgtcactt
     8281 ccctggacgg ggccgttgcg ttgcctgatt aaaaccgctt tgctggttgc tccgctgtat
     8341 gtgttcgttg ccgcctgggc gttatggctg cgggtcgctc agtacggctg gactgtcgac
     8401 cgcttgcagg gcgcgctggc ggtgctggtg ttactggtgt ggtcgctggg gtattttgtc
     8461 agtatcgtct ggcgtaatgg gcaaaatccc cttgttcttc agggcaaagt gaaccttgcg
     8521 gtttcgttat tggtgttggt gatactggtg cttcttaatt cgccggtgct ggacagtatg
     8581 cgtattagcg tgaacagtca tatggcgcgt tatcagagcg gcaaaaacac gccagaccag
     8641 gtaactatct acatgctcga acagagcggt cgctatggac gtgcggcgct tgagtcgctg
     8701 aaaagcgatg ccgggtttat gaaagacccg aaacgctcgc gggatctgct gatggcgtta
     8761 gatggagagc aacatcttca ggaacaggta tcggaaaaag tattagccga aaatgtgtta
     8821 attgcccctg gttctgttaa accggatgcg acattctggt cggccttaat ccaggatcgc
     8881 tataacgtga tgacctgtat tgaaaaagac gcctgcgtcc tggtcgagca agatctgaat
     8941 agtgatggtc aggcggagcg gatcctgttt gcttttaatg atgacagagt cattgtctat
     9001 ggctttgact cagacagaaa agaatgggac gcgcttgata tgagtttact tccgaacgaa
     9061 ataacgaaag aaaaattact cacagctgcg aaggatggaa aactggggac gaggccgaaa
     9121 gcgtggcgcg atctgacggt agatggtgaa acgctggaaa taaacttaag taagtgacaa
     9181 cgcttttatc ggatacgacg ctgtatctga ccaaaataat ttgcgattta tttcataggc
     9241 gctggtaagc gcagcacatc aggccattaa gttgtaaaat ccggcagagc cctctctgcc
     9301 ggacatactc attaatgaac ttgcggatct gccggagacg cgttgttgcg gatttcagca
     9361 atatccatcg cattgaacag atagtggtta ccgcagtaat cacaatgcat gtcaatttcg
     9421 ccatcttccg ccaggatgct atcaacttct tcatcaggca gcgttttcag cgcatcggcg
     9481 caatgttcac gcgagcaggt gcatttgaac tccacatcct gcggatcgta aaccgtcacc
     9541 tcttcttcgt gatacaaacg ccacaacact tcgtttgccg gtaaggtcag cagttcttcg
     9601 gttttgatgg tttcggttag cgtcgccagg tggtcaaagt cgtcctgctg ggcattttgc
     9661 gcaggcatta cctgcaacaa cataccgcct gtagccggtt tgccgtctac gtcgccggtg
     9721 cgaataaaca ggcgcgtcgg cagctgttca gaacgcataa agtaatcttc caggcaggcc
     9781 gccagggtat caccttccag accaactacg ccctgatagc gttcgccttc gctcggggta
     9841 atggtgatca ccacgtaacc attgccgacc agcgttttca ggtcggcatt ttctggaatt
     9901 tcgccctgca cgcgcgccac accgcgcatt tgctggttat tgttaccgtt aataaccgcc
     9961 agattcatcg gaccgtcgcc ctgcagctgt acggtgatat caccatcaaa cttcagcgta
    10021 gcggttaaca ggctggtcgc aaccagcagt tctgccagca cgtttttaac gggctgcgga
    10081 taatcgtggt tctcaaggat ctgttgcagg gtttccgaaa cggttaccag ttcgccgcga
    10141 acggcaaaat tttcaaacag atagcgatgt aattggtcat gttgcggcat aatcatctct
    10201 cttgcaggtg acagttattc actgtcgccg tgtttaaatc gtaacaggtc gcggcgctct
    10261 tttttgtccg ggcgtcggtc cgggtgcggc atggttaagg cattaagttt acgtgccatc
    10321 gccatttttt cgcgtttctc tacactttcc gcagtctctt catacagcaa ggctgcctcg
    10381 ctggcggggc gacgctgttc agtaatcgcc tttacaatca ccgtgcgttc gtcatttccc
    10441 tggcgcagag tgagcgtggc attcagctcg acgattttgc tcggcttgct gcgctgcccg
    10501 ttgtaatgca ccttaccgcc ttcaatcatt tcacgggcca gcgcgcgggt tttataaaaa
    10561 cgggcagccc atagccattt atccagtcga acctcaacag caggtttctc tttcatggcg
    10621 tctccttcac attagcgagg ggatcaggcg gcggtagtca ttcagtgacg gatggcgttg
    10681 atactgtttc tcggcaatcc cggaatcagg attagtcacg ccgaggcagt aacgaatacc
    10741 aaattgcgcg gcagcatcga gaatcgcttc gctgtcatca ataaacagcg ttctttcagc
    10801 tttcagaccc gtagcttcgg ccaccgcatg ccataaccgc tgatcctctt tcggataacc
    10861 aaatgtgtgg gtggaaagta ataaatcaag gtgtgcgtcc agacccgtat gctcaagttt
    10921 taccgccagg ttgtgcggat gagcattggt gagcaaaatt cgctgcttac cgctggcttt
    10981 cagtgcctca agaaacggaa tggtatcttc acgcagtacg gcgcgcggtc ccatctcggt
    11041 ggtcattgca cagatatcca gacccagttg ctcactccag taatcaagac agtaccagtt
    11101 tagcgtatgc tgtacgtcgt gatattgctg gcgcatatat tccatcgctt cctgtggcgt
    11161 aaccccgttt ttcgcgcccc atgtttcagg caccagcttt tgccagaaat agttatcgaa
    11221 ggcgaggtcg agcaacgtgc cgtccatatc cagcagaacg gtatctacgt cctgccaggc
    11281 aatgttgata tgcatgaggg aaatctccag agtgaagcaa tttgcgcgac agggtagcat
    11341 aacctgccgc gcaaacgtgt tattcgataa ggctttctga aggggtgatc agttgcgggt
    11401 tcaggcagct ttcataatag gcctgaatct ccatcatgcg agtgcgatga cgctggtaac
    11461 gacgccaggc ctgtacgcca ttgtaaatgg cgctacccag catcgtcagt agcagcaatg
    11521 tggtgctgag atagcgccac aggccggaac gatccgggat cggatgaagg ccaatatgct
    11581 gcgtaccatt ggcgtcagtg aagatttttg tgacgatacc ttcggcgtta aacggcgtat
    11641 gcatcagcat ttgtgccagt ttctggaaag cgttccactg ttcttgcagc gggtagtcgt
    11701 aaagtgatgc cgaaggccag ggctgatcaa caaaatcgct gccttcgtcg ctgacaatca
    11761 ggaatccgcc gggggccgga ctgtttagtg attgtgccgc tcgcgccgtt tcatgcgtga
    11821 taaacggcgc ggtggaggtt gccaccaggt tatccagcga ttccgcactc accgggcgta
    11881 ataacacatt cacgccatcg agcttcccgg cgttggcgcg ttttaccagc gcgtcccagt
    11941 ctttactgtt gccgagattg accagcgcat ttttcagtcg cacacagtca tctttggcag
    12001 aacataaatc cgctgtcttc agtacaatgt cgccaaaatc atcaagcaat accatgccgg
    12061 atttttgaat cgctgaacgt aatgaggcac tgacgcgaga ttcatcttcc ggtttagggt
    12121 gcagctggcg attaactgct tcagtcaatg ccgtcgcttt gttgaccagt tcagattctg
    12181 gtaatggtaa tgagcgggcg tcattccaga tgatctgcga gcagtcaaac ggtaaaaaag
    12241 gtgaattggt tttcgcgctc caggttccgg aagtgcgaat attacacatt cccgtaccgc
    12301 taatacgcaa tgtatcgcct acccgcacgc cagcgtcagc cagttgtttt acgctggtgg
    12361 cttcaatggt ctgcgcgcct ttcatccatg agagagtgaa tttcagcggc atatccagcg
    12421 ggatccagaa taacagcata aacagcacca gcagcgagcc cgcagcgata atcgtactgc
    12481 gcagccagtg ctgtaacgga aagtttttta cttcatcatg cagcgaaaga tatcgcccct
    12541 gacgcactac gtggcggtcg agatagatat caatatcggt ttgttgatcg agatcctgag
    12601 caatgtatgg ctgccagtgt gcgggataga ccaggtcgat aataccgagt gaaatattgt
    12661 tgatctgttc ctgatcgttt tcgccaaaca atccccaacg acggggtgta ccgcgcagac
    12721 aatgaatttc ccgcagggag gattttgccg ggggcgcgaa tagcccccac agacctgcgc
    12781 ccagcagcag taatgcgccg cctgccagcc acggaacaaa tacatccggg gtaatcaggc
    12841 agaaaaagaa catcaggaag gaggcgacga tcagcaacgc ttcacgcagc ccgcgcggac
    12901 gactcagcgc atattcttca tgcgtttctt tgcgaatatt gagtagctcg atttgctcac
    12961 tctcttcccc gcgaatcgac gcctgcgtgg acggaacagg ttgcaaggca tagccgcgcg
    13021 tttcctgcat gtactcctgc agcgtatgac cgttgagtga aataaccaac ggcagcgaat
    13081 cggtatgaat cagttcaacg gtattctcat cgttgatgta ctgttcccag aaggggggca
    13141 ggtggacttc taccgaatcg aggtagtaac gccatttatt cggatcgtcg gtagagatgc
    13201 cgtaacgtgt gatagcgtgt gtcagcatca tgacgttgtt gctttcggca ttcagcgcca
    13261 gagagatcgg tgccgcgcta gctcccgttg ggccaggcac ctgtaatacc tgcgtcaggc
    13321 tctcaagata attttcaacg gcgctacgtt cttcaggtgt gagtttacgc gtttgcgcat
    13381 ccgcgaaggc gttggtccag ggcagctgac gccgtctgga tcgcactttt atcagccatc
    13441 ccgcaagtag tgagcaggcc agcaaagcag ctaaaaaaat cacaatggtg ctcatgcttt
    13501 ccccatctta cttagtctgt caggcgtggt cagtcgcacc agacacaata catgattctg
    13561 cggttggcta tcggcaagcg tggagtttaa cttgagcatc attaagcaca tcacagtaac
    13621 cgctgatcat agcaaaccct ctgaaggcgg aatatcagca aattcttgga gttatttcaa
    13681 cctattgact tttaatttaa tttgatttga ggacgattat ttattaagtt acataaatgt
    13741 aaataacatg caattcacat tgccgaaagc gtgtctgata tcgcacaata accgctgatt
    13801 tcacagcata gatcccacga tgagcaaatc attacaaaaa cccaccattc tgaatgttga
    13861 aactgtagcc cgttcccgac tgtttaccgt cgagagcgtg gatctggagt tcagcaatgg
    13921 cgtgcggcgt gtttatgaac gaatgcgtcc aaccaaccgg gaagcagtga tgattgtgcc
    13981 gattgtggac gatcacctga tcctgatccg cgaatacgca gtgggaactg aatcctacga
    14041 attaggtttt tcgaaaggat taattgatcc gggtgaaagc gtctacgaag ccgctaaccg
    14101 cgagctaaaa gaagaggttg gatttggtgc gaacgatctg acttttttga agaagctcag
    14161 catggcaccg tcttactttt ccagcaaaat gaatatcgtg gtcgcgcaag atctctaccc
    14221 ggaatcgctg gaaggcgatg agccagagcc gctaccacag gtgcgctggc cgctggcgca
    14281 tatgatggat ttgctggaag accctgactt caacgaagcg cgtaatgtca gcgcgctgtt
    14341 cctcgtgcgc gaatggttga aagggcaggg gcgagtgtaa atgcgtgaag tttgcctgat
    14401 gcacaacgct tatcaggctt atggggtttc tgcaatatat tgatttttca cgattttgtt
    14461 agccggataa cgcgttcacc cgcatccggc ataaacaaat gcactttgtc agccaactga
    14521 aaaggcgccg aagcgccttt ttaatcagaa caattcctgt gcctcaccat tatcgataat
    14581 ggtcgttccc acctcgtgca ccgcctgttg tgtcggctgc gtaccttcga tgaaatactc
    14641 ttcgcggctg ttgccaccat tagctaactg cccggtgctg cgatcgatat tcaccgtcac
    14701 aatacccggt ggcggcgtca gcggctgctc cggcacacct tcaagaacgg ctttcatata
    14761 agcgtcccat gcaggctggg cactcttggc tccgccttcg taacctgaga tctgatcttt
    14821 aatcgctccg gaagccgttg tatgaccgag attacgacgg tgatcatcaa agccaatcca
    14881 gaccgaggtc acaacgcccg gaccgtaacc cgagaaccac gcatctttcg aactgttagt
    14941 ggtaccggtt ttcccgccga tatcgcgacg ctgcaaatca cgacctgcac gccagccagt
    15001 accctgccag cctggctcac caaagatatt ggtgttcaaa gcactcttaa tcaggaatgc
    15061 cagcggagtg ttgatgacgt gcggtgcgta ctcctgcgcg ccagtcttcg ccactaacgc
    15121 ctgatttgcc tgctccagct gcggcattgg tacagaaaca ttctgctgct cgcgggagat
    15181 agcgacatct tcaacatcgt tattttccag cacgttcgat ttctgcgtat caccgtaaat
    15241 caccggaata tcgcattccg ggcaggctac tttcggtttc gcttcgaaaa tcacgccgcc
    15301 ctgatcgttt tcaattttgc tgataaacca cgggtccacc aggaagccgc cgttcgccat
    15361 gaccgcgtag ccgcgcgcca cctgcattgg ggtgaaggac gctgaaccca gcgccagcga
    15421 ttcggtgtgg acaatgtttt gcgccgggaa gccgaagcgt tgcagatatt ctgcagcgta
    15481 gtcgacgccc atagcccgca ttgcacgtac catcaccacg tttttcgact gacccagccc
    15541 ctgacgtaag cgaattggac cagcatattg tggcggcgag tttttcggct gccagtcaga
    15601 accggcacct gcgtcccagc gagaaattgg cacatcgttc aacatacttg ccagcgtcag
    15661 acctttatcc atcgccgcgg tgtagaggaa cggtttgatg ttggaaccca cctgacgcag
    15721 tgcctgggtg gcgcggttaa acttgctctg attgaaatca aagccaccga ccagcgccat
    15781 aacggcaccg ttttgcggat tgatcgacac cagcgccgag ttcacttccg gcacttgtgc
    15841 cagccaccat gcatcgccaa cctgacgaac ccagatttgc tgacccgttt gcagaacatc
    15901 ggtcacttta cgcggcgtcg gtccttgctg agtatccgaa cggtaaggac gcgcccagcg
    15961 aacgccttcc atactcaatg cgacggtcga cccgtccgcc agcatcgccg tcgctccctg
    16021 aggattggcg ctggtgactg cggcaggcag cagcggacca taggtcggca gcgccttcag
    16081 cgtatcggta atcttgttgt tatcccacgc cgactcgccc actttccaca gcacatttgc
    16141 cgggccgcga tagccgtggc gcatgtcgta gtccagcacg ttattacgta ccgcctgctg
    16201 tgcggcctgc tgcactttgc gggtgatggt ggtgtaaatg cgataaccgt cttcataggc
    16261 actttcgcca taacggttat acatctcctg gcgcaccatt tcgctcaggt acggcgcaga
    16321 gaaagcaatc tccggcgcgt gatagttagc gttaatcgcc tcagtgcgtg tctgatcgaa
    16381 ctgttgttgg gtgatatacc cttcatccag catccgcgac agtacgacgt tacgccgcgc
    16441 gacggcacga tccattgagt agagcggatt aaaggtggaa ggcgctttcg gcagcccggc
    16501 tatcacagcc atttcgttca gcgtcagttg gtcgaccgtt ttaccgaaat agacttgtgc
    16561 cgcagcaccg acaccatagg cgcggtaacc gaggtaaatc ttgttcagat aaagctcgag
    16621 gatctcgtct ttcgtcagca actgttcaat gcgaatcgcg aggaagactt ccttaatctt
    16681 acgcatcagc gtgcgttctg gactgaggaa gaagtttctc gccagctgct gggtaatggt
    16741 actcgcccct tgtgacgcgt ggccggagaa cagcgccaca cttgccgcac ggaagatccc
    16801 caccgggtca acgccgtgat gcttgtagaa gcgactgtct tccgtcgcga taaaggcttt
    16861 caccatctcc ggcgggattt gatccaacgt aaccggaata cgacgtttct caccgtattg
    16921 agcaatcagc tcgccatcgg cgctgtaaat ctgcatcgga atttgcaggc gaacatcttt
    16981 taatgtcgcc acatccggca gttgtggctc gatgtagcgg tataggccat aaatcgagcc
    17041 tgctcccagc agaatgcaac agactgcaag gatcaaaaaa tactttacga acttcactgg
    17101 aaatttccca tttagtttca tttgggcagt ttataaacaa acgcgcggta gtataaaggc
    17161 aagccagacg cattgatata cccgtcagag tgacgggtga taaggagatc atcacaatgg
    17221 catttaagat ctggcaaatt ggtttgcatt tacaacagca agaagcggta gcggttgcga
    17281 tcgtgcgggg cgcaaaagaa tgctttttgc aacgctggtg gcggttgccg ctggagaacg
    17341 acattatcaa agatgggcgg attgttgatg cgcagcagct ggctaaaacg ttgttacctt
    17401 ggagtcgcga actgccgcag cgtcatcaca ttatgttggc gtttcccgcc agtcgcacat
    17461 tacagcggtc atttccgcgc ccgtcgatgt cccttggtga gcgggagcaa acggcctggc
    17521 tgtcagggac gatggcccgc gagctggata tggatccgga ctccctgcgc ttcgattaca
    17581 gcgaagactc actcagtccc gcctataacg tgactgccgc gcaaagcaaa gagctggcaa
    17641 cgctgcttac tctggcagaa aggttgcgtg ttcatgttag tgcgatcacc ccggatgcca
    17701 gtgcattaca gcgattcctg ccttttttac cttctcatca gcaatgtctg gcctggcgtg
    17761 ataacgaaca gtggctgtgg gcgacgcgct atagctgggg gcgcaaactg gcggtgggga
    17821 tgactagcgc gaaggagctg gcggcagcgt tattcgttga tcccgacagc gtcgcgatat
    17881 gtggcgaagg cggatttgac ccctgggagg ccgtttctgt tcgtcagccg ctgctaccgc
    17941 cgcctggtgg agactttgcc atcgcgctgg ggctggcgct tgggaaggcg tactgatgaa
    18001 cccgccaatt aattttttgc cctggcgacc gcaacgccgg accgcttttc tgcgtttctg
    18061 gttgctgatg ttcgttgcgc ctctgctgct ggccgtcggg ataacgctaa tactgcgtct
    18121 gacaggcagc gccgaagcgc gcatagacgc agttttgctt caggcggaac aacaactcgc
    18181 ccgcagctta cagataacga agccacgttt gctggagcaa cagcagttac gcgaacagcg
    18241 ttcgcaacgg cagcgccagc gacaatttac ccgcgactgg caatctgcgc tggaagcact
    18301 ggcggcgctt ttacccgagc acgcctggct gacaacgata agctggcagc agggaacgct
    18361 ggagatcaag gggctgacaa caagcattac cgcgttaaac gcactagaaa cgtcactccg
    18421 ccaggatgcg tcttttcatc tcaatcagcg gggagccacg cagcaggatg cgcagggacg
    18481 ctggcaattt gagtatcagt taacaaggaa ggttagcgat gaacatgttc tttgactggt
    18541 ggttcgccac atcaccccgc ctccgccagt tttgctgggc attctggttg ctgatgttag
    18601 ttacgctcat ttttctgtca tcgacacacc atgaagagcg cgacgcatta attcgattac
    18661 gggcaagtca tcaccagcag tgggccacac tgtatcgcct ggttgacacc actcccttca
    18721 gcgaagaaaa aacgctgccc ttttcgccac tggattttca gttgcccggc gcgcaactgg
    18781 tttcctggca tccatccgcg cagggaggtg agttggcgtt gaaaacgctg tgggaagcag
    18841 tgccgtcggc attcacacgg ctggcagagc gcaacgtcag cgtgagccgt ttttcgttaa
    18901 gcgtggaagg tgatgatctt ttgttcacgc tacaactgga gacgccgcat gagggttaaa
    18961 cgctggttgt tggcaggtat tgcattgtgc cttttaaccg gtatgcgtga cccttttaaa
    19021 ccgccggaag atctatgccg gattagcgaa cttagccagt ggcgctatca ggggatggta
    19081 gggcgaggcg agcgcatcat cggtgtaata aaagacgggc aaaagaaatg gcgacgggtg
    19141 cagcaaaacg atgtgctgga aaacggctgg acaattttac agctgacgcc agacgtacta
    19201 acgctgggta ccgggacaaa ctgcgaaccg ccacaatggt tgtggcaacg gcaaggagat
    19261 acaaatgaag caatggatag ccgcactact gttgatgctg atacccggcg tacaggcggc
    19321 aaagccgcaa aaagtgacgc tgatggtgga tgacgttccg gtagctcagg tgttgcaggc
    19381 gctggctgaa caggagaagt tgaacctggt cgtgtcgcca gacgtcagcg gtacggtgtc
    19441 gttacatcta acagatgttc cctggaagca ggcactacaa actgtagtga aaagcgccgg
    19501 actgataacg cggcaggaag gcaacattct ctcagtgcat tccattgcct ggcagaataa
    19561 caatatcgcc cgccaggagg cggagcaggc gcgggcgcag gcaaatctgc cgctggaaaa
    19621 tcgcagtata accctgcaat acgccgacgc gggagaactg gcgaaagcgg gggagaagct
    19681 actgagtgcc aaagggagta tgatcgtcga taaacgcacc aatcgccttt tgctacgaga
    19741 taacaaaacg gcgttaagcg cgcttgaaca gtgggtagcg caaatggatc tgccggtcgg
    19801 gcaggttgag ctgtcggcgc atattgtcac cattaatgaa aaaagtttgc gtgagttagg
    19861 cgtgaaatgg acgctggccg atgcgcaaca cgctggtggc gttgggcaag tcaccacgct
    19921 tggtagcgac ctctccgtag cgacggcgac aacgcatgtc ggttttaaca ttgggcgcat
    19981 caacggacgc ttgctggatc ttgagctttc cgcgctcgaa caaaaacagc agctggatat
    20041 tatcgccagt ccgcgtctgc tggcctcaca tcttcagcct gccagcatta aacaggggag
    20101 cgaaattcca tatcaggttt ccagcgggga aagtggcgcg acgtcggtgg aatttaaaga
    20161 ggccgtcctg gggatggagg tcacgcccac ggtgttacaa aaaggtcgca tccggctgaa
    20221 attacacatc agccagaacg ttccggggca ggtgctacag caggccgatg gcgaagtgct
    20281 ggcgattgat aagcaggaga tcgaaacgca ggttgaggtc aaaagcggag aaacgttggc
    20341 gctgggcggc atttttaccc gtaaaaataa atcgggtcag gatagcgtac cgttgcttgg
    20401 cgacattccc tggttcgggc aattatttcg tcatgacgga aaagaatatg aacgacgcga
    20461 gttagtggtg tttatcacgc cacgactggt ttccagtgag taaacagccg taaaagcggt
    20521 aatgttttta tgctgaacgt gtttcatcta tttgacgcgc gcaggtattt agcatacaag
    20581 gagtaccgat ttgagagttg gtgctcttcg ctgcctgcgt tccatgatga tgatttatca
    20641 ttcaggcggc attttgctgt cttttttacg ctaatcttac ccggtgattt atcgccagag
    20701 cggtggtagc aaggcagcgc gcttgcagcg accagatatg cagagggatg ggtgatttat
    20761 tcagttgcca aacccgctgg agtattgaga taattttcag tctgactctc gcaatatctt
    20821 atgaggtttc agttcatgtc ctgcggcgct ctctgagcga agcgggttta tcattaacga
    20881 atagtcttag tagtaccgaa aaaatggcag agaaacgcaa tatctttctg gttgggccta
    20941 tgggtgccgg aaaaagcact attgggcgcc agttagctca acaactcaat atggaatttt
    21001 acgattccga tcaagagatt gagaaacgaa ccggagctga tgtgggctgg gttttcgatt
    21061 tagaaggtga agaaggcttc cgcgatcgcg aagaaaaggt catcaatgag ttgaccgaga
    21121 aacagggtat tgtgctggct actggcggcg gctctgtgaa atcccgtgaa acgcgtaacc
    21181 gtctttccgc tcgtggcgtt gtcgtttatc ttgaaacgac catcgaaaag caacttgcac
    21241 gcacgcagcg tgataaaaaa cgcccgttgc tgcacgttga aacaccgccg cgtgaagttc
    21301 tggaagcgtt ggccaatgaa cgcaatccgc tgtatgaaga gattgccgac gtgaccattc
    21361 gtactgatga tcaaagcgct aaagtggttg caaaccagat tattcacatg ctggaaagca
    21421 actaattctg gctttatata cactcgtctg cgggtacagt aattaaggtg gatgtcgcgt
    21481 tatggagagg attgtcgtta ctctcgggga acgtagttac ccaattacca tcgcatctgg
    21541 tttgtttaat gaaccagctt cattcttacc gctgaaatcg ggcgagcagg tcatgttggt
    21601 caccaacgaa accctggctc ctctgtatct cgataaggtt cgcggcgtac ttgaacaggc
    21661 gggtgttaac gtcgatagcg ttatcctccc tgacggcgag cagtataaaa gcctggctgt
    21721 actcgatacc gtctttacgg cgttgttaca aaagccgcat ggtcgcgata ctacgctggt
    21781 ggcgcttggc ggcggcgtag tgggcgatct gaccggcttc gcggcggcga gttatcagcg
    21841 cggtgttcgt ttcattcaag tcccgacgac gttactgtcg caggtcgatt cctccgttgg
    21901 cggcaaaact gcggccaacc atcccctcgg taaaaacatg attggcgcgt tctaccagcc
    21961 tgcttcagtg gtggtggatc tcgactgtct gaaaacgctt cccccgcgtg agttagtgtc
    22021 ggggctggca gaagtcatca aatacggcat tattcttgac ggtgcgtttt ttaactggct
    22081 ggaagagaat ctggatgcgt tgttgcgtct ggacggtccg gcaatggcgt actgtattcg
    22141 ccgttgttgt gaactgaagg cagaagttgt cgccgccgac gagcgcgaaa ccgggttacg
    22201 tgctttactg aatctgggac acacctttgg tcatgccatt gaagctgaaa tggggtatgg
    22261 caattggtta catggtgaag cggtcgctgc gggtatggtg atggcggcgc ggacgtcgga
    22321 acgtctcggg cagtttagtt ctgccgaaac gcagcgtatt ataaccctgc tcaagcgggc
    22381 tgggttaccg gtcaatgggc cgcgcgaaat gtccgcgcag gcgtatttac cgcatatgct
    22441 gcgtgacaag aaagtccttg cgggagagat acgcttaatt cttccgttgg caattggtaa
    22501 gagtgaagtt cgcagcggcg tttcgcacga gcttgttctt aacgccattg ccgattgtca
    22561 atcagcgtaa caacaagaaa ggtcaggccg cttatcaagc ggtctattag cttcaggtta
    22621 attgcaacgt ggtaagcatt aaccttttag tggggtgtta aatggatgaa ttcaaaccag
    22681 aagacgagct gaaacccgat cccagcgatc gtcgtactgg tcgttctcgt caatcttctg
    22741 aacgttctga gcgtactgaa cgtggcgaac cgcagatcaa ttttgatgat attgaacttg
    22801 atgacactga cgatcgccgt ccgactcgtg cgcaaaaaga gcgcaatgag gaaccggaaa
    22861 tcgaagaaga aattgacgaa tccgaagatg aaaccgtgga tgaagagcgc gtagagcgtc
    22921 gtccgcgtaa gtgcaaaaaa gcagccagta aacccgcttc tcgtcagtat atgatgatgg
    22981 gcgtcggcat tctggttcta ctgctgttga tcatcggtat cggttctgcg ctaaaagccc
    23041 cctcgacctc ttccagcgat caaaccgcgt ctggcgagaa gagtattgat cttgcaggca
    23101 atgcgaccga tcaggcgaat ggggtgcagc cagcgccggg aaccacgtct gcggaaaata
    23161 ctcagcagga tgtttctctg ccaccgatct cttctacgcc gactcaaggg caaaccccgg
    23221 cggcaacgga tggtcaacaa cgtgttgaag tgcagggtga cctgaacaat gcgctgactc
    23281 agccacaaaa tcagcaacag ttgaacaatg tggcggtcaa ttccacattg ccgaccgaac
    23341 cagcgactgt cgcgcctgtt cgcaatggca atgcatcgcg tgacacggcg aaaacgcaaa
    23401 ccgctgaacg tccgtccact acgcgcctag ctcgtcagca ggcggtgatt gaaccgaaaa
    23461 aaccgcaagc aaccgtgaaa acggagccga agccggtagc acagacgccg aagcgtactg
    23521 aaccagctgc ccctgtggcg agcacgaagg caccggctgc gacttctacg ccagcaccaa
    23581 aagagacggc gactacggct ccagtacaga cggcatcccc ggcgcaaacc acggcaacac
    23641 cagccgctgg agggaagacc gcaggtaatg ttggttcgtt gaaatcggca ccgtccagcc
    23701 attacactct gcagctgagc agttcctcta actacgacaa cctgaacggt tgggcgaaga
    23761 aagagaatct gaaaaactac gttgtctatg aaacgacgcg taatggtcag ccgtggtatg
    23821 tcctggtttc tggcgtgtac gcttcgaaag aagaggcgaa aaaagcggta tctacattgc
    23881 cagcagatgt tcaggccaaa aacccgtggg cgaaaccgct gcgtcaggta caggccgatc
    23941 tgaagtaatc aaggttatct cccgcaatgg tttatcgttg cgggagctgc ctgaagcgct
    24001 ggatgctgtc ggagctttct ccacagccgg agaaggtgta attagttagt cagcatgaag
    24061 aaaaatcgcg cttttttgaa gtgggcaggg ggcaagtatc ccctgcttga tgatattaaa
    24121 cggcatttgc ccaagggcga atgtctggtt gagccttttg taggtgccgg gtcggtgttt
    24181 ctcaacaccg acttttctcg ttatatcctt gccgatatca atagcgacct gatcagtctc
    24241 tataacattg tgaagatgcg tactgatgag tacgtacagg ccgcacgcga gctgtttgtt
    24301 cccgaaacaa attgcgccga ggtttactat cagttccgcg aagagttcaa caaaagccag
    24361 gatccgttcc gtcgggcggt actgttttta tatttgaacc gctacggtta caacggcctg
    24421 tgtcgttaca atctgcgcgg tgagtttaac gtgccgtttg gccgctacaa aaaaccctat
    24481 ttcccggaag cagagttgta tcacttcgct gaaaaagcgc agaatgcctt tttctattgt
    24541 gagtcttacg ccgatagcat ggcgcgcgca gatgatgcat ccgtcgtcta ttgcgatccg
    24601 ccttatgcac cgctgtctgc gaccgccaac tttacggcgt atcacacaaa cagttttacg
    24661 cttgaacaac aagcgcatct ggcggagatc gccgaaggtc tggttgagcg ccatattcca
    24721 gtgctgatct ccaatcacga tacgatgtta acgcgtgagt ggtatcagcg cgcaaaattg
    24781 catgtcgtca aagttcgacg cagtataagc agcaacggcg gcacacgtaa aaaggtggac
    24841 gaactgctgg ctttgtacaa accaggagtc gtttcacccg cgaaaaaata attctcaagg
    24901 agaagcggat gaaacagtat ttgattgccc cctcaattct gtcggctgat tttgcccggc
    24961 tgggtgaaga taccgcaaaa gccctggcag ctggcgctga tgtcgtgcat tttgacgtca
    25021 tggataacca ctatgttccc aatctgacga ttgggccaat ggtgctgaaa tccttgcgta
    25081 actatggcat taccgcccct atcgatgtac atctgatggt gaaacccgtc gatcgcattg
    25141 tgcctgattt cgctgccgct ggtgccagca tcattacctt tcatccagaa gcctccgagc
    25201 atgttgaccg cacgctgcaa ctgattaaag aaaatggctg taaagcgggt ctggtattta
    25261 acccggcgac acctctgagc tatctggatt acgtgatgga taagctggat gtgatcctgc
    25321 tgatgtctgt taacccaggt tttggcggtc agtcgttcat tccacaaaca ctggataaac
    25381 tgcgcgaagt acgtcgtcgt atcgacgagt ctggttttga cattcgactg gaagtggacg
    25441 gtggcgtgaa ggtgaacaac attggcgaaa tcgctgcggc gggcgcggat atgttcgtcg
    25501 ccggttcggc aatcttcgac cagccagact acaaaaaagt cattgatgaa atgcgcagtg
    25561 aactggcaaa ggtaagtcat gaataagttt gaagatattc gcggcgtcgc ttttgatctc
    25621 gacggtacgc tggttgacag tgctcccggt cttgctgctg cggtagatat ggcgctgtat
    25681 gcgctggagt tacccgtcgc aggtgaagaa cgcgttatta cctggattgg taacggcgca
    25741 gatgttctga tggagcgtgc attggcctgg gcgcgtcagg aacgtgcgac tctgcgtaaa
    25801 acaatgggta aaccgcccgt tgatgacgac attccggcag aagaacaggt acgtattctg
    25861 cgtaaactgt tcgatcgcta ctatagcgag gttgccgaag aggggacgtt tttgttcccg
    25921 cacgttgccg atacgttggg cgcgttgcag gctaaaggcc tgccgctagg cctggtcacc
    25981 aacaaaccga cgccgttcgt cgcgccactg ctcgaagcct tagatattgc caaatacttt
    26041 agcgtggtta tcggcggcga tgatgtgcaa aacaaaaaac cgcatccgga cccgctgtta
    26101 ctggtggctg agcggatggg aattgcccca caacagatgc tgtttgtcgg cgactcacgc
    26161 aatgatattc aggcggcaaa agcggcaggt tgcccatcag ttggcttaac ctacggatat
    26221 aactacggcg aggctatcga tctcagccag cctgatgtaa tttatcagtc tataaatgac
    26281 cttctgcccg cattagggct tccgcatagc gaaaatcagg aatcgaaaaa tgactaagcc
    26341 catcgttttt agtggcgcac agccctcagg tgaattgacc attggtaact acatgggtgc
    26401 gctgcgtcag tgggtaaaca tgcaggatga ctaccattgc atttactgta tcgttgacca
    26461 acacgcgatc accgtgcgcc aggatgcaca gaagctgcgt aaagcgacgc tggatacgct
    26521 ggccttgtat ctggcttgtg gtatcgatcc tgagaaaagc accatttttg ttcagtccca
    26581 cgtaccagaa catgcgcagt taggctgggc actgaactgc tatacctact tcggcgaact
    26641 gagccgcatg acccagttta aagataaatc tgcgcgttat gccgagaaca tcaacgctgg
    26701 tctgtttgac tatccggtgc tgatggctgc ggacatcctg ctgtatcaaa ctaatctggt
    26761 accggtgggt gaagaccaga aacagcacct ggaactgagt cgcgatatcg cccagcgttt
    26821 caacgcgctg tatggcgaga tctttaaggt gccggagccg tttattccga aatctggcgc
    26881 gcgcgtaatg tcgctgctgg agccgaccaa gaagatgtcc aagtctgacg ataaccgcaa
    26941 taacgttatc ggcctgctgg aagatccgaa atcggtagtg aagaaaatca aacgcgcggt
    27001 cactgactcc gacgagccgc cggtagttca ctacgatgtg cagaacaaag cgggcgtttc
    27061 caacctgctg gatatccttt ctgcggtaac gggccagagc atcccagaac tggaaaaaca
    27121 gttcgaaggc aagatgtatg gtcatctgaa aggtgaagtg gctgatgccg tttccggtat
    27181 gctgactgaa ttgcaggaac gctatcaccg tttccgcaac gatgaagcct tcctgcaaca
    27241 ggtgatgaaa gacggcgcag aaaaagccag tgtacacgct tcccgtacgc tgaaagcggt
    27301 gtacgaagcg attggttttg tggcgaagcc gtaatatcaa aacgctcgga cggtcccctc
    27361 gcccctttgg ggagagggtt agggtgaggg gagcaggcaa gcgccagtgg gaattaccct
    27421 ttgctcgcat tgtcgaataa atcacttcgt catcactctg aaaccgggga aacccggttt
    27481 ttttatcctc atttgcaata atccgaaaaa atgtgaagcg cctcgccgtt tccacatctc
    27541 acagttgcca cttatcttca ttttaatgaa gatataaaca ttcattttat tgaaaatata
    27601 ttatgcgtcg aacgtttatc aaaaaagaag gcgtcgtcat cacgacgctg gcccgttatt
    27661 tgttggggga aaaatgcggt aatcgactga aaaccataga tgagctggca actgaatgcc
    27721 gttcatcggt tggcctgacg caggccgtgt tgaaaacgtt ggaatcaagt ggagcgatac
    27781 ggattgaacg ccgtgggcgc aatggcagtt atctggtcga aatggataat aaagcgctgc
    27841 tgagtcatgt ggatatcaat aacgttgtgt gtgccatgcc tttgccctat acccgcttgt
    27901 acgaaggttt agcaagcggg ctgaaagccc agtttgatgg cattcctttt tattatgcgc
    27961 atatgcgtgg cgcggatatt cgtgtggagt gtttgcttaa cggtgtctat gacatggcag
    28021 tagtttcccg cctggcggcg gaaagttatc tcagccaaaa caatttgtgc atcgccctcg
    28081 agcttggccc gcatacgtat gttggtgaac atcaactgat atgccgcaaa ggtgagtctg
    28141 gaaatgttaa gcgagtaggt ctcgatagtc gttcggcgga tcagaaaatc atgaccgatg
    28201 tcttttttgg cgatagtgat gtggaacgtg tcgatctctc ttatcacgag agtttacaac
    28261 gcattgttaa aggcgatgtc gatgcggtta tctggaacgt ggtggcggaa aacgaactga
    28321 ccatgctggg attagaggcg acgccgctca cagacgatcc gcgattttta caggccaccg
    28381 aagccgtggt cctgacgcga gtcgatgatt acccaatgca acaactgctg cgtgccgttg
    28441 tagataaaca cgccctgctc gcccatcaac aacgggtagt gagtggggaa caggaaccga
    28501 gttattaaac gaaaggcatc tgatatggaa accagactca acctgctttg cgaggcaggc
    28561 gttattgata aggacatctg caaaggcatg atgcaggtcg tcaacgtact ggaaacagag
    28621 tgccatctgc cggtgcgcag tgagcaagga acgatggcga tgacacatat ggcgagtgca
    28681 ctgatgcgca gtcgccgtgg tgaagaaata gagccgctgg ataacgaatt gctggcagag
    28741 ctggcgcaat ccagccactg gcaagccgtt gtgcaattgc atcaggtgtt gttgaaggaa
    28801 ttcgcactgg aagttaatcc gtgtgaagaa ggctatttgc tggccaacct ttatggatta
    28861 tggatggctg ctaacgaaga ggtttgaagc tcccgacaaa tccacgtcgc acaacctaaa
    28921 tattcaaaaa aatgaatatt taattcaagg aacagaaacg aggcaacaag atgtttgtag
    28981 aagcattgaa acgccagaac ccggcgctga tttccgccgc actaagtttg tggcagcagg
    29041 gcaagatcgc cccggacagc tgggtgatcg acgtggatca ggtactggaa aacggtaagc
    29101 gactgattga gacggcgcgg ctttacggca ttgaactgta tctgatgacc aagcagtttg
    29161 gccgtaaccc atggctggcg gaaaaattgc tggcattagg ttacagcggc attgtggcgg
    29221 tggattacaa agaggcgcga gtcatgcgcc gcgctggttt gtcggtggcg catcaggggc
    29281 atctggtaca aatcccttgt catcaggttg ctgacgccgt tgaacagggc accgacgtca
    29341 tcaccgtgtt tactctcgac aaagcgcggg aagtttctgc ggcagcggtg aaggccggac
    29401 gtgtgcagtt tgtgctgctc aaagtttata gcgacgatga ttttctttat ccggggcagg
    29461 agagcggttt tgtacagcat tcgctgcacg aggtggttgc tgaaattaag aaactgccgg
    29521 gtctgcattt agccggactt acccatttcc cttgcctgct ttgggatgag gctgccggaa
    29581 aagttttgcc gacaccgaat cttcacacgc tgatacaggc acgggatcaa ctggcgaaat
    29641 ctggtattgc acttgagcaa ctgaacgcgc cttcagcgac cagctgcact tcgctgccat
    29701 tactggcgca atacggtgtg actcatgccg aacccggtca tgcgctgacg ggcactattc
    29761 cggcaaacca gcagggcgat cagtctgaac gtatcgcgat gctctggttg agtgaaatct
    29821 cccatcattt ccgtggcgac agctactgct acggcggcgg ttactaccgt cgtggtcatg
    29881 cgcaacatgc gttggtgttt acgccagaaa atcaaaagat tactgaaacc aatctcaaaa
    29941 ctgtggatga cagcagtatc gactacaccc tgtcgctggc aggcgagttt ccggtaagca
    30001 gtgcagtggt gctctgtttc cgcacgcaga tttttgtcac ccgtagcgat gtggtgctgg
    30061 tgtccggtat tcaccgtggc gaaccgaaaa tcgttggtcg ttatgacagt cttggaaact
    30121 ctctgggggc gtaatggcgc gatttgtggt gttagtgatt gatagctttg gcgtaggggc
    30181 aatgaaagat gtcacgctgg tgcgtccgca agatgcggga gcgaatacat gtggtcacat
    30241 cctgagccag ttgccgcatt tgcagctacc aacgctggag aagctggggc taatcaacgc
    30301 attgggttat gcgccaggcg atatgcagcc gtcagattcc gcaacctggg gcgtggcaga
    30361 gctgcaacat gaaggtggcg atacctttat ggggcatcag gaaattttag gcacgcgccc
    30421 gttaccgccg ctgcggatgc ctttttgcga tgtgattgac cgtgttgagc aggcattagt
    30481 atccgccggt tggcaggtgg agcgccgtgg cgatgaactg caatttctgt gggtcaatca
    30541 ggcggttgcg attggcgata atctcgaggc ggatttaggc caagtctata acattaccgc
    30601 caatctctct gtgatctctt ttgacgacgc aatcaaaatt ggtcgtatcg tgcgtgagca
    30661 ggtacaggtc ggtcgggtca ttacatttgg tggcctgtta accgacagtc aacgcattct
    30721 cgatgccgca gaaagcaaag aagagcgctt tattggtatc aatgcgccgc gttctggcgc
    30781 ttatgacaac ggcttccagg tcgtgcatat gggctacggt gtcgataaaa aagtgcaggt
    30841 gccgcaaaaa ctgtatgagg cgggcgtgcc aaccgtgctg gtgggtaagg tggcagatat
    30901 cgtcagcaat ccttatggcg tgagctggca aaacctggtg gatagccagc ggattatgga
    30961 tatcaccctc gacgaattta acacccatcc gacggcgttt atttgcacca atatccagga
    31021 aaccgacctc gctggtcatg cagaagacgt cgcacgttat gccgaacgtt tgcaggtcgt
    31081 tgaccgtaac cttgcccggc ttgttgatgc gatgcagcca gatgattgcc tggtcgtgat
    31141 ggcggatcac ggcaacgatc cgaccattgg tcacagccac catacccgcg aagtggtgcc
    31201 gctgctggtt tatcagcaag gcctggctgc tacgcagctc ggtgtgcgca ccacgctttc
    31261 tgatgtggga gctaccgtgt gtgaattttt ccgtgcgcca ccgccacaaa atggtcgctc
    31321 ttttctttcc tccctccggt ttgcaggaga caccctatga gttttgatcc gacgggttac
    31381 accctggccc atgagcatct gcatattgat ctctccggct ttaaaaacaa cgtggactgc
    31441 cgccttgatc agtatgcgtt catttgccag gagatgaacg acctgatgac ccggggtgta
    31501 cgtaatgtga ttgagatgac caaccgttac atggggcgca atgcgcaatt tatgctcggt
    31561 gtaatgcgcg aaaccgggat caacgtggtg gcctgtactg gttattacca ggatgcgttt
    31621 ttcccggaac atgtggtgac ccgcagcgtg caggaactgg cgcaggagat ggtcgatgaa
    31681 attgaacagg gtatcgatgg cacggagctg aaagccgggc tcatcgcgga gatcggctcc
    31741 agcgaaggaa agattacgcc gctggaagag aagatattta ttgccgctgc gctggcgcat
    31801 aaccagaccg gacgcccgat ctccacgcat acgtcgttca gcaccatggg gctggaacaa
    31861 ctggctctgt tgcaagccca cggagttgat ctttcgcgcg tcaccgttgg tcactgcgat
    31921 ctgaaagaca acctcgacaa cattttgaag atgatcgatc tcggcgcgta cgtgcagttc
    31981 gacaccattg gtaagaacag ttactacccg gacgaaaagc gcattgcgat gctccacgcg
    32041 ctacgtgacc gtgggttgct gaaccgcgtc atgctgtcga tggatattac gcgccgctcc
    32101 catttaaaag ccaatggtgg ttatggctat gactatttat tgaccacctt tattccgcaa
    32161 ttgcgccagt caggattcag tcaggccgat gtggatgtga tgttacgtga aactccctat
    32221 caatttttcc aataaggaca gactcatgaa aaagattggc gttgcaggct tacagcgtga
    32281 gcagattaaa aaaaccattg aagcgacggc tcctggcagt tttgaagttt tcattcacaa
    32341 cgacatggaa gcggcaatga aagtgaaatc cgggcaactg gattactaca tcggtgcgtg
    32401 taataccggt gcgggcgcgg cattgtcgat tgccatcgcg gtgattggct ataacaaaag
    32461 ttgcaccatt gccaaaccag gcattaaagc gaaagacgag catatcgcca aaatgatcgc
    32521 tgaaggtaaa gtggcgtttg gcctttccgt tgagcacgtc gaacacgcga ttccgatgct
    32581 gattaaccat ctgaaataaa aggcacgact atggatctgt atattcagat tatcgtggtg
    32641 gcgtgcctga cgggtatgac atcgcttctg gcgcatcgct cggcggctgt ttttcatgac
    32701 ggcatccgcc cgatcctgcc gcaactgatt gaaggctata tgaaccgtcg cgaggcgggg
    32761 agtatcgctt ttggtctgag cattggtttt gtggcctcgg tggggatttc ttttaccctg
    32821 aaaaccgggc tgctc
//
LOCUS       DADMHM010000025        32624 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.026, whole genome shotgun sequence.
ACCESSION   DADMHM010000025 DADMHM010000000
VERSION     DADMHM010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 32624)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32624)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32624
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.026"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..267)
                     /locus_tag="JN125_000996"
     CDS             complement(<1..267)
                     /locus_tag="JN125_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870854.1"
                     /translation="METQWTRMTADEAAEIIQHNDMVAFSGFTPAGSPKALPTAIARR
                     ANEQHEAKKPYQIRLLTGASISAAADDVLSDADAVSWRAPYQTSS"
     gene            complement(291..1076)
                     /gene="scpB"
                     /locus_tag="JN125_000997"
     CDS             complement(291..1076)
                     /gene="scpB"
                     /locus_tag="JN125_000997"
                     /EC_number="7.2.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311816.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA decarboxylase"
                     /protein_id="HAY8870855.1"
                     /translation="MSYQYVNVATINKVAVIEFNYGRKLNALSKVFIDDLMQALSDLN
                     RPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQITRMIQKFPKPIISM
                     VEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIHNLTRDAGFHIVKEL
                     IFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPLAIAVIKEELRVLGE
                     AHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFVGH"
     gene            complement(1087..2082)
                     /gene="meaB"
                     /locus_tag="JN125_000998"
     CDS             complement(1087..2082)
                     /gene="meaB"
                     /locus_tag="JN125_000998"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl Co-A mutase-associated GTPase
                     MeaB"
                     /protein_id="HAY8870856.1"
                     /translation="MINEATLAESIRRLRQGERATLAQAMTLVESRHPRHQALSTQLL
                     DAIMPYCGNTLRLGVTGTPSAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSIL
                     GDKIRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQS
                     ETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYE
                     SALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIEFKTALTASGRLQQVRQQQSVE
                     WLRKQTEEEVLNHLFANEDFDRYYRQTLLAVKNNTLSPRTGLRQLSEFIQTQYFD"
     gene            complement(2075..4218)
                     /gene="scpA"
                     /locus_tag="JN125_000999"
                     /pseudo
     CDS             complement(2075..4218)
                     /gene="scpA"
                     /locus_tag="JN125_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417392.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase"
     gene            complement(4422..5315)
                     /locus_tag="JN125_001000"
     CDS             complement(4422..5315)
                     /locus_tag="JN125_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator ArgP"
                     /protein_id="HAY8870857.1"
                     /translation="MKRPDYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLEN
                     MFGQPLLVRTVPPRPTEQGQKLLALLRQVELLEEEWLGDEQTGSTPLLLSLAVNADSL
                     ATWLLPALAPVLADSPIRLNLQVEDETRTQERLRRGEVVGAVSIQHQALPSCLVDKLG
                     ALDYLFVSSKPFAEKYFPNGVTRSALLKAPVVAFDHLDDMHQAFLQQNFDLPPGSVPC
                     HIVNSSEAFVQLARQGTTCCMIPHLQIEKELASGELIDLTPGLFQRRMLYWHRFAPES
                     RMMRKVTDALLDYGHKVLRQD"
     gene            5698..6357
                     /gene="rpiA"
                     /locus_tag="JN125_001001"
     CDS             5698..6357
                     /gene="rpiA"
                     /locus_tag="JN125_001001"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HAY8870858.1"
                     /translation="MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMKG
                     QIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGAALTR
                     EKIIASVAEKFICIADASKQVDILGKFPLPVEVIPMARSAVARQLVKLGGRPEYRQGV
                     VTDNGNVILDVHGMEILDPIAMENAINAIPGVVTVGLFANRGADVALIGTPDGVKTIV
                     K"
     gene            6612..7844
                     /locus_tag="JN125_001002"
     CDS             6612..7844
                     /locus_tag="JN125_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-3-phosphoglycerate dehydrogenase"
                     /protein_id="HAY8870859.1"
                     /translation="MAKVSLEKDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDD
                     EQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVF
                     NAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYG
                     HIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTK
                     NMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDP
                     FTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPL
                     HGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEK
                     ALQAMKAIPGTIRARLLY"
     gene            8073..8132
                     /gene="ibsC"
                     /locus_tag="JN125_001003"
     CDS             8073..8132
                     /gene="ibsC"
                     /locus_tag="JN125_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin IbsC"
                     /protein_id="HAY8870860.1"
                     /translation="MMRLVIILIVLLLISFGAY"
     gene            8465..8524
                     /locus_tag="JN125_001004"
     CDS             8465..8524
                     /locus_tag="JN125_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HAY8870861.1"
                     /translation="MMRLAIILIVLLLISFPAY"
     gene            complement(8625..9227)
                     /locus_tag="JN125_001005"
     CDS             complement(8625..9227)
                     /locus_tag="JN125_001005"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311809.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HAY8870862.1"
                     /translation="MTQLPELPLTLSRQEIRKMIRQRRRALTPEQQLEMGQQAATRMM
                     TYPPVVMAHTVAVFLSFDGELDTQPLIEQLWRAGKRVCLPVLHPFSAGNLLFLNYHPQ
                     SELVMNRLKIHEPKLDVRDVLPLSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQ
                     HYKTQPVGYAHDCQLVEKLPVEEWDIPLPAVVTPSKVWEW"
     gene            complement(9248..9431)
                     /gene="ssrS"
                     /locus_tag="JN125_001006"
     ncRNA           complement(9248..9431)
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="JN125_001006"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(9473..9802)
                     /gene="zapA"
                     /locus_tag="JN125_001007"
     CDS             complement(9473..9802)
                     /gene="zapA"
                     /locus_tag="JN125_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HAY8870863.1"
                     /translation="MSAQPVDIQIFGRSLRVNCPPDQRDALNQAADDLNQRLQDLKER
                     TRVTNTEQLVFIAALNISYELAQEKAKTRDYAASMEQRIRMLQQTIEQALLEQGRITE
                     KTNQNFE"
     gene            9970..10548
                     /gene="ygfB"
                     /locus_tag="JN125_001008"
     CDS             9970..10548
                     /gene="ygfB"
                     /locus_tag="JN125_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708672.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein YgfB"
                     /protein_id="HAY8870864.1"
                     /translation="MSIQNEMPGYNEMNQYLNQQGTGLTPAEMHGLISGMICGGNDDS
                     SWLPLLHDLTNEGMAFGHELAQALRKMHSATSDALQDDGFLFQLYLPDGDDVSVFDRA
                     DALAGWVNHFLLGLGVTQPKLDKVTGETGEAIDDLRNIAQLGYDEDEDQEELEMSLEE
                     IIEYVRVAALLCHDTFTHPQPTAPEVQKPTLH"
     gene            10574..11899
                     /gene="pepP"
                     /locus_tag="JN125_001009"
     CDS             10574..11899
                     /gene="pepP"
                     /locus_tag="JN125_001009"
                     /EC_number="3.4.11.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro aminopeptidase"
                     /protein_id="HAY8870865.1"
                     /translation="MSEISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPY
                     RQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEK
                     LGVDRALAFSEINQQLYQLLNGLDVVYHAQGEYAYADEIMNSALEKLRKGSRQNLTAP
                     ATMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH
                     EFNRHGARYPSYNTIVGSGENGCILHYTENESELRDGDLVLIDAGCEYKGYAGDITRT
                     FPVNGKFTQAQREIYDIVLESLETSLRLYRPGTSILEVTGEVVRIMVSGLVKLGILKG
                     DVDELIAQNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPD
                     AEVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEIEALMAAARKQ"
     gene            11896..13074
                     /gene="ubiH"
                     /locus_tag="JN125_001010"
                     /gene_synonym="visB"
     CDS             11896..13074
                     /gene="ubiH"
                     /locus_tag="JN125_001010"
                     /gene_synonym="visB"
                     /EC_number="1.14.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-octaprenyl-6-methoxyphenyl hydroxylase"
                     /protein_id="HAY8870866.1"
                     /translation="MSVIIVGGGMAGATLALAISRLSHGALPVHLIEATAPESHAHPG
                     FDGRAIALAAGTCQQLARIGVWQSLADCATAITTVHVSDRGHAGFVTLAAEDYQLAAL
                     GQVVELHNVGQRLFALLRKAPGVTLHCPDRVANVARTQSHVEVTLESGETLTGRVLVA
                     ADGTHSALATACGVDWQQEPYEQLAVIANVATSVAHEGRAFERFTQHGPLAMLPMSDG
                     RCSLVWCHPLERREEVLSWSDEKFCRELQSAFGWRLGKITHAGKRSAYPLALTRAARA
                     ITHRTVLVGNAAQTLHPIAGQGFNLGMRDVMSLAETLTQAHERGEDIGDYGILCRYQQ
                     RRQSDREATIGVTDSLVHLFANRWAPLVVGRNIGLMTMELFTPARDVLAQRTLGWVAR
                     "
     gene            13097..14299
                     /gene="ubiI"
                     /locus_tag="JN125_001011"
                     /gene_synonym="visC"
     CDS             13097..14299
                     /gene="ubiI"
                     /locus_tag="JN125_001011"
                     /gene_synonym="visC"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent 2-octaprenylphenol hydroxylase"
                     /protein_id="HAY8870867.1"
                     /translation="MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADA
                     PPQLRVSAINAASEKLLTRLGVWQDILSRRASCYHGMEVWDKDSFGHISFDDQSMGYS
                     HLGHIVENSVIHYALWNKAQQSSDITLLAPAELQQVAWGENETFLTLKDGSMLTARLV
                     IGADGANSWLRNKADISLTFWDYQHHALVATIRTEEPHDAVARQVFHGEGILAFLPLS
                     DPHLCSIVWSLSPEEAQRMQQASEDEFNRALNIAFDNRLGLCKVESARQVFPLTGRYA
                     RQFAAHRLVLVGDAAHTIHPLAGQGVNLGFMDAAELIAELKRLHRQGKDIGQYIYLRR
                     YERSRKHSAALMLAGMQGFRDLFSGTNPAKKLLRDIGLKLADTLPGVKPQLIRQAMGL
                     NDLPEWLR"
     gene            complement(14373..14456)
                     /locus_tag="JN125_001012"
     CDS             complement(14373..14456)
                     /locus_tag="JN125_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870868.1"
                     /translation="MSKNTKSKNNDIRKYNAKTEVKLVYFK"
     gene            14746..15840
                     /gene="gcvT"
                     /locus_tag="JN125_001013"
     CDS             14746..15840
                     /gene="gcvT"
                     /locus_tag="JN125_001013"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HAY8870869.1"
                     /translation="MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRTDA
                     GMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVY
                     YFTEDLFRLVVNSATREKDLSWITQHAEPFGIEITVRDDLSMIAVQGPNAQAKAATLF
                     NDAQRQAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAGVKP
                     CGLGARDTLRLEAGMNLYGQEMDETISPLAANMGWTIAWEPADRDFIGREALEVQREH
                     GTEKLVGLVMTEKGVLRNELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI
                     GETAIVQIRNREMPVKVTKPVFVRNGKAVA"
     gene            15864..16253
                     /gene="gcvH"
                     /locus_tag="JN125_001014"
     CDS             15864..16253
                     /gene="gcvH"
                     /locus_tag="JN125_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HAY8870870.1"
                     /translation="MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVD
                     LPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWI
                     FKIKASDESELESLLDATAYEALLEDE"
     gene            16372..19245
                     /gene="gcvP"
                     /locus_tag="JN125_001015"
     CDS             16372..19245
                     /gene="gcvP"
                     /locus_tag="JN125_001015"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase"
                     /protein_id="HAY8870871.1"
                     /translation="MTQTLSQLENSGAFIERHIGPDAAQQQEMLNAVGAQSLNALTGQ
                     IVPKDIQLATPPQVGAPATEYAALAELKAIASRNKRFTSYIGMGYTAVQLPPVILRNM
                     LENPGWYTAYTPYQPEVSQGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAM
                     AKRVSKLKNSNRFFVASDVHPQTLDVVRTRAETFGFEVIVDDAQKVLDHQDVFGVLLQ
                     QVGTTGEIHDYTALISELKSRKIVVSVAADIMALVLLTAPGKQGADIVFGSAQRFGVP
                     MGYGGPHAAFFAAKDEYKRSMPGRIIGVSKDAAGNTALRMAMQTREQHIRREKANSNI
                     CTSQVLLANIASLYAVYHGPVGLKRIANRIHRLTDILAAGLQQKGLKLRHAHYFDTLC
                     VEVADKAGVLARAEAAEINLRSDILNAVGITLDETTTRENVMQLFSVLLGDNHGLEID
                     TLDKDVAHDSRSIQPAMLRDDEILTHPVFNRYHSETEMMRYMHSLERKDLALNQAMIP
                     LGSCTMKLNSAAEMIPITWPEFAELHPFCPPEQAEGYQQMIAQLADWLVKLTGYDAVC
                     MQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLIPASAHGTNPASAHMAGMQVVVVAC
                     DKNGNIDLTDLRAKAEQAGDNLSCIMVTYPSTHGVYEETIREVCEVVHQFGGQVYLDG
                     ANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVV
                     QIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQD
                     AFPVLYTGRDGRVAHECILDIRPLKEETSISELDIAKRLIDYGFHAPTMSFPVAGTLM
                     VEPTESESKVELDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAEWAHP
                     YSREVAVFPAGVADKYWPTVKRLDDVYGDRNLFCSCVPISEYQ"
     gene            19511..20254
                     /locus_tag="JN125_001016"
     CDS             19511..20254
                     /locus_tag="JN125_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAY8870872.1"
                     /translation="MAIALVTGGSRGIGRATALLLAKEEYTVAVNYQQNLHAAQEVVN
                     LITQAGGKAFVLQADISDENQVIAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAE
                     RINRVLSTNVTGYFLCCREAVKRMALKNGGSGGAIVNVSSVASRLGSPGEYVDYAASK
                     GAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGELGRVDRVKSNIPMQRGGQA
                     EEVAQAIVWLLSDKASYVTGSFIDLAGGK"
     gene            complement(20311..21744)
                     /locus_tag="JN125_001017"
     CDS             complement(20311..21744)
                     /locus_tag="JN125_001017"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708664.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HAY8870873.1"
                     /translation="MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTGGAHG
                     VPREITKEVLPGKYYPNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEA
                     QPNEEGLKFYDSLFDELLKYNIEPVITLSHFEIPLHLVQQYGSWTNRKVVDFFVRFAE
                     VVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHDNPEETMYQVLHHQFV
                     ASALAVKAARRINPEMKVSCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLRGY
                     YPSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMINAVKAEGGTGDAISGFE
                     GSVPNPYVKASDWGWQIDPVGLRYALCELYERYQRPLFIVENGFGAYDKVEEDGCIND
                     DYRIDYLRAHIEEMKKAVTYDGVDLMGYTLWGCIDCVSFTTGQYSKRYGFIYVNKHDD
                     GTGDMSRSRKKSFNWYKEVIASNGEKL"
     gene            21789..22100
                     /locus_tag="JN125_001018"
     CDS             21789..22100
                     /locus_tag="JN125_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASCH domain-containing protein"
                     /protein_id="HAY8870874.1"
                     /translation="MQPNDITFFQRFQDDIMAGRKTITIRDESESHFKTGDVLRVGRF
                     EDDGYFCTIEVTATSTVTLDTLTEKHAEQENMTLTELIKVIADIYPGQTQFYVIEFKC
                     L"
     gene            22264..22923
                     /locus_tag="JN125_001019"
     CDS             22264..22923
                     /locus_tag="JN125_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HAY8870875.1"
                     /translation="MVQKPLIKQGYSLAEEIANSVSHGIGLVFGIVGLVLLLVQAVDL
                     NASATAITSYSLYGGSMILLFLASTLYHAIPHQRAKMWLKKFDHCAIYLLIAGTYTPF
                     LLVGLDSPLARGLMIVIWSLALLGILFKLTIAHRFKILSLVTYLAMGWLSLVVIYEMA
                     VKLAAGSVTLLAVGGVVYSLGVIFYVCKRIPYNHAIWHGFVLGGSVCHFLAIYLYIGQ
                     A"
     gene            complement(23119..24099)
                     /gene="ygfZ"
                     /locus_tag="JN125_001020"
     CDS             complement(23119..24099)
                     /gene="ygfZ"
                     /locus_tag="JN125_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-modifying protein YgfZ"
                     /protein_id="HAY8870876.1"
                     /translation="MAFTPFPPRQPTASARLPLTLMTLDDWALATITGADSEKYMQGQ
                     VTADVSQMTENQHLLAAHCDAKGKMWSNLRLFRDGDGFAWIERRSVREPQLTELKKYA
                     VFSKVTIAPDDERVLLGVAGFQARAALANLFSELPSREKQVVKEGATTLLWFEHPAER
                     FLIVTDEATANMLTDKLRGEAELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQA
                     LGGISFKKGCYTGQEMVARAKFRGANKRALWLLAGSASRLPEAGEDLELKMGENWRRT
                     GTVLAAVKLEDGQVVVQVVMNNDMEPDSIFRVRDDANTLHIEPLPYSLEE"
     gene            24342..24608
                     /gene="sdhE"
                     /locus_tag="JN125_001021"
     CDS             24342..24608
                     /gene="sdhE"
                     /locus_tag="JN125_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000354044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD assembly factor SdhE"
                     /protein_id="HAY8870877.1"
                     /translation="MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRIFI
                     RLLECDDPDLFNWLMNHGKPADAELEMMVRLIQTRNWERGPVAI"
     gene            24589..24996
                     /locus_tag="JN125_001022"
     CDS             24589..24996
                     /locus_tag="JN125_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin CptA"
                     /protein_id="HAY8870878.1"
                     /translation="MVLWQSDLRVSWRAQWLSLLIHGLVAAVILLMPWPLSYTPLWMV
                     LLSLVVFDCVRSQRRINARQGEIRLLMDGRLRWQGQEWSIVKAPWMIKSGMMLRLRSD
                     GGKRQHLWLAADSMDEAEWRDLRRILLQQETQR"
     gene            complement(25036..25557)
                     /gene="fldB"
                     /locus_tag="JN125_001023"
     CDS             complement(25036..25557)
                     /gene="fldB"
                     /locus_tag="JN125_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldB"
                     /protein_id="HAY8870879.1"
                     /translation="MNMGLFYGSSTCYTEMAAEKIRDIIGPELVTLHNLKDDSPKLME
                     QYDVLILGIPTWDFGEIQEDWEAVWDQLDDLNLEGKIVALYGLGDQLGYGEWFLDALG
                     MLHDKLSTKGVKFVGYWPTEGYEFTSPKPVIADGQLFVGLALDETNQYDLSDERIQSW
                     CEQILNEMAEHYA"
     gene            25669..26565
                     /gene="xerD"
                     /locus_tag="JN125_001024"
     CDS             25669..26565
                     /gene="xerD"
                     /locus_tag="JN125_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HAY8870880.1"
                     /translation="MKQDLARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG
                     LTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLAS
                     PKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDI
                     SLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQM
                     TRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTT
                     QIYTHVATERLRQLHQQHHPRA"
     gene            26590..27300
                     /gene="dsbC"
                     /locus_tag="JN125_001025"
     CDS             26590..27300
                     /gene="dsbC"
                     /locus_tag="JN125_001025"
                     /EC_number="5.3.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000715205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional protein-disulfide
                     isomerase/oxidoreductase DsbC"
                     /protein_id="HAY8870881.1"
                     /translation="MKKGFMLFTLLAAFSGFAQADDAAIQQTLAKMGIKSSDIQPAPV
                     AGMKTVLTNSGVLYITDDGKHIIQGPMYDVSGAAPVNVTNKMLLKQLNALEKEMIVYK
                     APQEKHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLESQAEQQMKAIW
                     CAKDKNKAFDDVMAGKAATPASCDIDIADHYALGVQLGVSGTPAIVLSNGTLVPGYQP
                     PKEMKEFLDEHQKMTSGN"
     gene            27306..29039
                     /gene="recJ"
                     /locus_tag="JN125_001026"
     CDS             27306..29039
                     /gene="recJ"
                     /locus_tag="JN125_001026"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HAY8870882.1"
                     /translation="MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERS
                     VKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRPLGCSN
                     IDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTD
                     HHLPGETLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERGIA
                     IPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQ
                     KLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQ
                     GMQIEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG
                     DGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFELFQQRFG
                     ELVTEWLDPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ
                     QRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRS
                     LQIIIDNIWPI"
     gene            29130..30228
                     /gene="prfB"
                     /locus_tag="JN125_001027"
     CDS             join(29130..29204,29206..30228)
                     /gene="prfB"
                     /locus_tag="JN125_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311790.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HAY8870883.1"
                     /translation="MFEINPVNNRIQDLTERSDVLRGYLDYDAKKERLEEVNAELEQP
                     DVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDEETFNEAVAE
                     LDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRG
                     FKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFS
                     SAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQN
                     DRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIK
                     DLRTGVETRNTQAVLDGSLDQFIEASLKAGL"
     gene            30238..31755
                     /gene="lysS"
                     /locus_tag="JN125_001028"
     CDS             30238..31755
                     /gene="lysS"
                     /locus_tag="JN125_001028"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001740376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HAY8870884.1"
                     /translation="MSEQHAQGADAVVDLNNELKTRREKLANLREQGIAFPNDFRRDH
                     TSDQLHAEFDGKENEELEALNIEVAVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARD
                     DLPEGVYNEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGL
                     QDQEARYRQRYLDLISNDESRNTFKVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGA
                     AARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFT
                     MMELYMAYADYKDLIELTESLFRTLAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIK
                     KYRPETDMADLDNFDSAKAIAESIGIHVEKSWGLGRIVTEIFEEVAEAHLIQPTFITE
                     YPAEVSPLARRNDINPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAG
                     DDEAMFYDEDYVTALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFPAMRPVK"
     gene            complement(31798..32346)
                     /gene="idi"
                     /locus_tag="JN125_001029"
     CDS             complement(31798..32346)
                     /gene="idi"
                     /locus_tag="JN125_001029"
                     /EC_number="5.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopentenyl-diphosphate Delta-isomerase"
                     /protein_id="HAY8870885.1"
                     /translation="MQTEHVILLNAQGVPTGTLEKYAAHTADTLLHLAFSSWLFNAKG
                     QLLVTRRALSKKAWPGVWTNSVCGHPQLGERNEDAVIRRCRYELGVEITPPESIYPDF
                     RYRATDPNGIVENEVCPVFAARTNSALQINDDEVMDYQWCDLADVLHGIDATPWAFSP
                     WMVMQAANSEARKLLSAFAQHN"
     gene            32401..32472
                     /locus_tag="JN125_001030"
     CDS             32401..32472
                     /locus_tag="JN125_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870886.1"
                     /translation="MINQVSVYRQPPVLSGCRQVKTI"
     gene            complement(32469..32594)
                     /locus_tag="JN125_001031"
     CDS             complement(32469..32594)
                     /locus_tag="JN125_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870887.1"
                     /translation="MNLLMRAIFSLLLLFTLSIPVISDCVAMAIESRFKYMMLLF"
BASE COUNT         7709 a         8238 c         8838 g         7839 t
ORIGIN      
        1 ggatgatgtt tgatatggcg cacgccagga aacagcatcg gcgtcagaaa gtacatcgtc
       61 agcggcggcg ctgattgacg cccccgtcag caggcgaatt tgatacggct ttttggcctc
      121 atgctgttcg ttagctctgc gggcaatcgc ggtgggtagg gctttcggcg aacccgccgg
      181 ggtaaagccg ctaaatgcca ccatgtcgtt atgctggata atttctgccg cttcatcggc
      241 ggtcatcctt gtccactgag tttccatttt tactccttcg ttcgcaggga ttaatgacca
      301 acgaaattag gtttacgttt ttcgaggaaa gcgttcattc cttcctggta atcttcgctg
      361 tcataaaccg cgcgtcgcat cccctgaata cgttcaaatt catcggagtt catggtgtgc
      421 gcttcgccca gtacacgcag ctcttctttg ataacagcaa tggctaacgg cgctttctca
      481 gagatgtggt gcgccatttg taaggtgaaa tcttccagtt cttccacttc cacaacatgg
      541 ttgaggatgc cgacagccag cgcgcgctgg gcggtgattg gcgaagcggt aaaaatcagc
      601 tctttgacaa tgtggaagcc cgcgtcgcgg gtcaggttgt gaatgccgac caggttatac
      661 gggacgccga ggtttacagg cgtcattgag aaggttgagg tactggcggc gatgatcaga
      721 tcggaactca tgatcatttc aaatgcgcca ccccaaacac taccttccac catcgaaatg
      781 atcggtttcg ggaatttttg gatcatgcgg gtgatttgac gcaatggatc atcataggag
      841 agcggatcgc gaccgccaga cggcagttcg tgaatatcgt gacctgcgga gaagactttg
      901 gatccactcg gcgcgcgcaa aatgatacag cgaatttccg gccggttgag atcgcttaac
      961 gcctgcataa gatcatcaat aaagacttta cttaaggcat taagttttcg gccatagtta
     1021 aactcaatga ccgccacttt gttgatagtg gcaacgttca catactgata agacataaaa
     1081 attcctttaa tcaaaatatt gcgtctggat aaattcactg agctgccgca ggccggtgcg
     1141 cggtgagagc gtattgtttt tgaccgctaa aagcgtctgg cggtaatagc gatcgaaatc
     1201 ttcattcgcg aacaggtgat tcagtacttc ttcttcggtc tgcttacgca gccattccac
     1261 cgattgttgt tgccgcactt gttgtaaacg accactggca gttagcgcgg ttttgaactc
     1321 gatgatggcg tgccagatct catcgattcc acgtttttcc agtgcgctac aagtcagaac
     1381 ccgtggctgc cattcgtcgt atttacgtcg cagaatatgc agggcactct cgtacatatg
     1441 ccgggcaatg gcgacattgg tatggttatc gccatcgtct ttgttgataa cgatcagatc
     1501 agccacttcc atcagccctt ttttaatgcc ctgcagatca tcgccgccac cggcaatttg
     1561 caacgagata aaacagtcca ccatgcgggc gacttctgtt tccgactgcc cgacgccaac
     1621 cgtttcgaca atcactacgt cataacccgc cgcttcgcat aacagcatta attcccgcgc
     1681 tcgctgactg gcaccgccca gatgaccgga ggatggtacc gggcgaataa acgccgcttc
     1741 ggcacgcgcc aggtcattca tgcggatttt atccccgaga atgctaccgc cagtgaccgg
     1801 gctgctggga tcgaccgcaa taaccgcgac ctttaatccc tctcgaatca acaacatgcc
     1861 aaaggcctca agaaaggtac ttttccccgc gctgggggtg ccggtaacgc ccagtcgcag
     1921 ggtgttaccg cagtacggca taatggcatc aagcagctgc gtacttagtg cctgatgacg
     1981 cgggtgacgg ctttccacca gcgtcatggc ctgggcgagt gtggcacgct caccctgacg
     2041 taagcggcga atactttctg ccagcgtggc ttcattaatc atgatgctgg cttatcagat
     2101 tcagtacgtc gcgcacactg tcgagcatag gtgtacctgg accataaatc gcgccacgcc
     2161 gcgctcttgc aggaaggcgt aatcctgcgg tggaatgacg ccaccggcga ctacgcagat
     2221 atcttcgcgt ccccattttt tcagcgcctc gaccagttcc gggatcagcg ttttatgacc
     2281 ggcagccagt gaggatgcgc ccactacgtg aacgtcattt tctactgcca ggcgggcgat
     2341 ctcttcaggt gtagagaaca tcgggcttaa atctacgtcg aaaccgagat cggaataggc
     2401 gctggcgatc actttcgagc cgcgatcgtg cccatcctgg cccattttgg cgatcagaat
     2461 gcgcgggcga cgaccattgt cggcaaggaa ctgctccgtt tgcgcaacaa tggcatcgaa
     2521 ctcggaggcc gatttctcag attgatgata gctttgcgca atcacgccgg taacacactg
     2581 gcttggcacc agataacggt cgaaagcggc ttccagcgca tcggaaattt cacccagggt
     2641 ggcgcgaacg cgagcggcat taacagcggc agccagcagg ttttcgttat gctgtgcggc
     2701 gtgagtcagg gcgttcaacg cggcggttac ggcggcatca tcacgggtgg cgcgaatgcg
     2761 ttccagcaaa gcaatttgct cgttacgcac catcacgttg tcgatctcaa gtacatcggt
     2821 ttcgtcttcg tgatccagtt tgtacttgtt gacaccaacg atgacacgtt tgccctggtc
     2881 gataagcgac tgttcgcgcg ctgaggccta ttcgatcatt cgttttggca gacctgcttc
     2941 gatcgctttc gccataccac cggcttcgtc gatctgttgg ataatagctc tggcttgttt
     3001 gacgatttga tcggtcagcg actcaatgta ataggatccg gccagaggat cgacggtgcg
     3061 gcagagttct gattcttcct ggatgatgat ctgggtgttg cgggcaatgc gtgctgagaa
     3121 atcggtaggc aaaccaagcg cttcgtcaaa ggcgttggta tgcagtgact gagtaccgcc
     3181 cagcgtcgca gccagtgctt caatggtggt gcggataacg ttgttatacg gatcctgttc
     3241 agtcaggctc cagcctgagg tctggcagtg ggtacgcagc gccagtgatt tcgggtcctg
     3301 tgcgccaaat ccactgaccg cttcgctcca taaataacgt gccgcacgca acatggcgac
     3361 gttcataaac agatccatgc cgatgccgaa gaagaacgac aggcgaggag cgaagtcatc
     3421 aattttcagt ccggcagaga ttgctgcttt gatgtactca atcccatcag cgagcgtaaa
     3481 tgctacctgc tgcacgcagt tggcacccgc ttcacccatg tggtaaccgc tgatactgat
     3541 ggtattaaat cgcggcatgt tgccggaaca ccaggcgatg atgtcggcga taatgcgcat
     3601 tgacggtttt ggcgggtaaa tataggtgtt gcggcagagg tactctttga ggatatcgtt
     3661 ctgaatggtg ccggtcagtt tatcaggtgt aacaccttgc tcttccgcgg cgacgatata
     3721 aaacgccagt actggtagca ctgcgccatt catggtcatc gaaaccgaca ttttatccag
     3781 cgggatctgg tcgaacagga ctttcatatc ttccacggtg tcgatagcga cgcccgcttt
     3841 gccgacgtcg cccgccacgc gcgggttatc ggagtcgtag cctcggtggg tggcaaggtc
     3901 aaacgcaacg gaaagacctt tttacccggc ggccaggtta cggcgataaa aagcgttgga
     3961 ctcttttgct gttgaaaaac cagcatactg acggatggtc cacggttggg cggtatacat
     4021 agtggcacgc gggccacgaa cgtagggcgg caaaccagga agggtacctg tcacctccag
     4081 attatcgaga tcggcttcgg tatacagcgg cttgatggtg atcccttccg cggtttgctg
     4141 aaccagcgag tcgacagttt tctcccgacg gctcaattcc ttgttggcaa gctgttgcca
     4201 ctcctgcacg ttagacatta tttgctccgt aaaacgcaat caaaatgagg gtatttgcgc
     4261 ctacggtgag ctttttacgt gggtttgtcg ccagcaaaaa aaatgcattc agacgtcgtt
     4321 ttttgccgcc tgagatttgt ctattttgtg atgtgattca aggaatacaa aaagaagtga
     4381 ggacaacgcc tgatatgtgc tatcaggcat tatttgatgg attaatcctg acgaaggact
     4441 ttgtgaccat aatcgagcaa cgcatcagtg actttacgca tcatgcggct ttcaggagca
     4501 aagcggtgcc agtagagcat ccggcgttga aatagccctg gcgttaagtc aatcagttca
     4561 ccgctggcta gttctttctc gatttgcagg tgcgggatca tacagcaggt ggtgccctgg
     4621 cgagcaagtt gcacgaacgc ttctgaagaa ttaacgatat ggcagggcac gctgcctgga
     4681 ggcagatcga agttttgctg caaaaaggcc tggtgcatat cgtcaagatg gtcaaaggcg
     4741 accacaggtg ctttcaataa tgccgaacgc gttacgccgt tagggaaata tttttcggca
     4801 aacggttttg agctgacgaa cagatagtca agcgcaccga gcttatcgac aaggcaactc
     4861 ggcagcgcct gatgttgaat actcaccgcg ccgaccactt cgccgcggcg cagacgttcc
     4921 tgagtacggg tttcatcttc tacctgcaag ttgaggcgga taggcgaatc agccaataca
     4981 ggagccagtg ccggaagcaa ccacgtcgcc agactgtcgg cgttgaccgc cagtgaaagc
     5041 agcagcggag tcgaaccggt ttgttcatcg cccagccact cttcttccag caactccacc
     5101 tggcgcagca gtgccagcag tttttgccct tgttccgtcg ggcgcggcgg tacggtacgc
     5161 accaacagcg gctgcccgaa catattttcc agttgcttaa tgcgctgtga gacggctgat
     5221 tgtgtaatgc acagcttttg tgccgcgcgc tcaaatcctc gttcacgtat caccgcatcc
     5281 agtgcctgta atgttctgta gtccgggcgt ttcattgctg ttgtctgctc ctggtaaatg
     5341 ctttttcctg cactatgaca caattttgtg tcaggttgca tataccgcag ccgtcggcgg
     5401 gtaacatttg tatcaatggt taaacgcgca gcttaaaaga tcagggattt gcgctattgc
     5461 atttcgctta gcgacttcgc gccctggtta tgttgaatgg cgtggcgtta ttgcctctgt
     5521 ttgcaccgtg gagcggcata cccagaccgt tgtatgcttt atttgcgggg cgaaagggga
     5581 tgcccgccat tgcgcgatat tttatggatg agttaaccac ccggcttgcc aacggggtct
     5641 gaatcgcttt ttttgtatat aatgcgtgtg aaatttcata ccacaggcga aacgatcatg
     5701 acgcaggatg aattgaaaaa agcagtagga tgggcggcac ttcagtatgt tcagcccggc
     5761 accattgttg gtgtaggtac aggttccacc gccgcacact ttattgacgc gctcggcacg
     5821 atgaaaggcc agattgaagg ggccgtttcc agttcagatg cttccactga aaaactgaaa
     5881 agcctcggca ttcacgtttt tgatctcaac gaagtcgaca gccttggcat ctacgttgat
     5941 ggcgcagatg aaatcaacgg ccacatgcaa atgatcaaag gcggcggcgc ggcgctgacc
     6001 cgtgaaaaaa tcattgcttc ggttgcggaa aaatttatct gtattgccga cgcctccaag
     6061 caggttgata ttctgggtaa attcccgctg ccagtagaag ttatcccgat ggcacgtagt
     6121 gcagtggcgc gccagctggt gaaactgggc ggtcgtccgg aataccgtca gggcgtggtg
     6181 accgataatg gcaacgtgat cctcgacgtc cacggcatgg aaatccttga cccgatagcg
     6241 atggaaaacg ccataaatgc gattcctggc gtggtgactg ttggcttgtt tgctaaccgt
     6301 ggcgcggacg ttgcgctgat tggcacacct gacggtgtca aaaccattgt gaaatgatct
     6361 gacgggggaa cctcccccgt taaaaaaatt ctcttcatta aatttggtga catgtgtcac
     6421 gtttttacct ggctattgtc gattgctcta aataaatcct ctaaaccagc atattcaacc
     6481 aagaaatacc tttgcgtgat atttcctcaa catcgcgacg caaacgttca tattgccgca
     6541 atattatttt ttgatatgtt gaaaggcgga tgcaaatccg cacacaacat ttcaaagaca
     6601 ggattgggta aatggcaaag gtatcgctgg agaaagacaa gattaagttt ctgctggtag
     6661 aaggcgtgca ccaaaaggcg ctggaaagcc ttcgtgcagc tggttacacc aacatcgaat
     6721 ttcacaaagg cgcgctggat gatgaacaat taaaagaatc catccgcgat gcccacttca
     6781 tcggcctgcg atcccgtacc catctgactg aagacgtgat caacgccgca gaaaagctgg
     6841 tcgctattgg ctgtttctgt ataggaacaa accaggttga tctggatgcg gcggcaaagc
     6901 gcgggatccc ggtatttaac gcaccgttct caaatacgcg ctctgttgcg gagctggtga
     6961 ttggcgaact gctgctgcta ttgcgcggcg tgccggaagc caatgctaaa gcgcaccgtg
     7021 gcgtgtggaa caaactggcg gcgggttctt ttgaagcgcg cggcaaaaag ctgggtatca
     7081 tcggctacgg tcatattggt acgcaattgg gcattctggc tgaatcgctg ggaatgtatg
     7141 tttactttta tgatattgaa aataaactgc cgctgggcaa cgccactcag gtacagcatc
     7201 tttctgacct gctgaatatg agcgatgtgg tgagtctgca tgtaccagag aatccgtcca
     7261 ccaaaaatat gatgggcgcg aaagaaattt cactaatgaa gcccggctcg ctgctgatta
     7321 atgcttcgcg cggtactgtg gtggatattc cggcgctgtg tgatgcgctg gcgagcaaac
     7381 atctggcggg ggcggcaatc gacgtattcc cgacggaacc ggcgaccaat agcgatccat
     7441 ttacctctcc actgtgtgaa ttcgacaacg tacttctgac gccacacatt ggcggttcga
     7501 ctcaggaagc gcaggagaat atcggcctgg aagttgcggg taaattgatc aagtattctg
     7561 acaatggctc aacgctctct gcggtgaact tcccggaagt ctcgctgcca ctgcatggtg
     7621 gtcgtcgtct gatgcacatc cacgaaaacc gtccgggcgt gctaactgcg ctgaacaaaa
     7681 tcttcgccga gcagggcgtc aacatcgccg cgcaatatct acaaacttcc gcccagatgg
     7741 gttatgtagt tattgatatt gaagctgacg aagacgttgc cgaaaaagcg ctgcaggcaa
     7801 tgaaagctat tccgggtacc attcgcgccc gtctgctgta ctaattcccc ttctctgaaa
     7861 attaacgggc aggtcactga cttgcccgtt tttttatccc ttctccacac cgttgccgcg
     7921 ttgcgcattc tactttgcga gtctgctcca gaaaataaat caaagtcaga tcaatgcgtt
     7981 gtgtttattt aatggggatt tacgatggcg ggacagcatg gggctgtaac ggtaaagccc
     8041 tcaccgaagc gagggcttaa aggagaaggg ttatgatgcg acttgtcatc atactgattg
     8101 tactgttact gataagtttc ggagcttatt aacagtcagt ctctggggag gagtcatcct
     8161 cccttaccct tactcactaa attaggtcaa agaatcaacg atgtcaatca gggcgatgcg
     8221 gggtgcatcg ccctgaaccg aactttttga tagccacttc atcgcccacg tttactgccg
     8281 taatagatcc tttttcccaa aaattatctc tgttttgcat ggggtttttc gaacacgctc
     8341 gaagaaaaga tttaaaggta gatcaatgcg ttgtggttat ttaaagagag cttacgatag
     8401 ctgggcagca tggggctgta acggtaaagc cctcaccgaa gcgagggctt gaaggagaag
     8461 ggttatgatg cgacttgcca tcatactgat tgtactgtta ctcataagtt tcccagctta
     8521 ttaacagtca gtcacagggg aggagcaatc ctcccttacc cttactcact aaattaggtt
     8581 aaagaatcaa cgatgtcaat cagggcgatg caggtgtatc gcccttacca ctcccagact
     8641 ttcgacggtg taaccaccgc aggaagaggg atatcccact cttcaacggg gagtttttcc
     8701 accaactgac aatcatgcgc ataacccacc ggttgcgttt tatagtgctg ccagttttgt
     8761 aaggtccgat cataaaaacc accgcccatt cccaggcgct gaccgtactc atcaaaggcg
     8821 accagcggtg tgatcagcac gtctaatcgg gaaaggggta gcacgtcacg cacatccagt
     8881 tttggctcat ggattttcaa cctgttcatc accagttcgc tttgcggatg gtaattcagg
     8941 aacagcaaat taccagcact aaagggatgc aaaactggaa gacatacgcg cttaccggcg
     9001 cgccagagtt gttctattag cggctgggtg tcgagttcac catcaaaaga gaggaataca
     9061 gcgaccgtat gcgccatcac caccggggga taagtcatca tccgggtagc ggcttgttga
     9121 cccatttcca gctgttgttc cggcgttaac gcacgacgac gttgccgaat cattttgcgg
     9181 atttcttgtc gggataatgt cagtgggagt tctggtagtt gcgtcatggc tggtgccaga
     9241 taagaaggga atctccgaga tgccgccgca ggctgtaacc cttgaaccct tggttcaagg
     9301 tgaatgtgtc gtcgcagttt taaggcttct cggacggacc gagcatgctc accaaccgcg
     9361 gagcgccaca ttcttgtggt atgaaatatc ggctcagggg actggcccgc ttgcgaacat
     9421 ctcagagaaa ttttgtcttc acggttactc taccacagta aaccgaaaag tgtcattcaa
     9481 agttttggtt agttttttcg gtgatgcgac cttgttcaag taacgcttgt tctatggtct
     9541 gctgcagcat ccgaatacgc tgttccatac ttgccgcgta gtcacgagtc ttcgcttttt
     9601 cttgcgctaa ctcatagctg atattcaatg cggcaatgaa gaccaactgt tcagtatttg
     9661 tgactctagt gcgttctttc agatcttgca accgttggtt cagatcgtcc gctgcctgat
     9721 tcaacgcatc cctttggtca ggcgggcagt tcacacgcag tgaacggcca aaaatttgga
     9781 tatcgacggg ttgtgcagac atgccacctt cctgctgatt gactgcgctg ccttcgtctt
     9841 tagacccatg gtctgcgaag gggcgacact atagctaccc tgatgagaag agacaagccc
     9901 ttttctggtc caccagggcc caaagtggta gcatatcatg aatattcctc cctttgacga
     9961 cgaatgctta tgtctataca gaacgaaatg cctggttaca acgaaatgaa ccagtatctg
    10021 aaccaacaag ggacgggtct gacccctgcc gagatgcatg gtttaatcag tgggatgata
    10081 tgtggcggta acgatgacag ctcatggctg ccgctacttc acgacctgac gaacgaaggc
    10141 atggctttcg gtcatgagct ggcacaggca ctgcgtaaaa tgcactctgc caccagcgat
    10201 gccctgcagg atgacggctt cctttttcag ctttatctgc ctgatggcga tgatgtcagc
    10261 gttttcgatc gggctgatgc attggcaggt tgggtcaatc acttcctgct tggtcttggc
    10321 gttacgcaac cgaagctgga taaagtgacc ggcgaaaccg gtgaagctat cgacgatctg
    10381 cgtaacattg cgcaactggg ttacgacgaa gacgaagatc aggaagagct tgaaatgtcg
    10441 cttgaagaga tcatcgaata cgttcgtgtt gccgcgctgt tatgccacga cacctttact
    10501 catccgcaac cgaccgcgcc agaagtacaa aaaccgactc tacactaaaa acaaaaaacg
    10561 taaggagagt gttatgagtg agatatcccg gcaagagttt cagcgtcgcc gtcaggccct
    10621 ggtggagcaa atgcaacccg gcagcgccgc gctgattttt gctgcaccag aagtaacacg
    10681 tagcgccgac agcgaatacc cctatcgtca gaacagtgac ttctggtact tcaccggctt
    10741 taacgaaccg gaagcggtgc tggtgctgat taaaagcgat gacactcata accacagcgt
    10801 tctgtttaac cgcgttcgcg acctgacggc ggagatctgg tttggccgtc gcttaggcca
    10861 ggatgccgcg ccagagaaac tgggcgttga ccgcgcactg gcattcagcg aaatcaatca
    10921 gcaactttat caactactta acggcctgga tgtggtttac catgcccagg gcgaatatgc
    10981 atatgctgat gaaatcatga acagtgcgct ggaaaaactg cgtaaaggtt cgcggcaaaa
    11041 tctcaccgca ccggcaacga tgatcgactg gcgtcctgtt gttcatgaaa tgcgcctgtt
    11101 caaatcgcca gaagagattg ccgtactccg ccgcgcggga gaaatcaccg ccatggcaca
    11161 tacacgggcg atggaaaaat gccgtccggg aatgttcgag taccatctgg aaggcgaaat
    11221 tcaccacgaa tttaaccgcc acggtgcgcg ctatccgtcc tataacacca ttgtcggcag
    11281 cggtgaaaac ggctgcattc tgcactacac cgaaaacgag agtgaactgc gcgacggtga
    11341 cctggtgttg attgacgcgg gttgtgaata caaaggttac gcgggcgata ttacccgcac
    11401 cttcccggtc aacggcaaat tcacccaggc ccagcgtgaa atctacgaca ttgtgctgga
    11461 gtctctcgaa accagcctgc gcctgtatcg tccgggaact tccattctgg aagtcactgg
    11521 tgaagtggtg cgcatcatgg ttagcggcct ggtaaaactc ggcattctga aaggtgatgt
    11581 tgatgaactg atcgctcaga atgcccatcg tcctttcttt atgcatggcc ttagccactg
    11641 gttagggcta gatgtccatg acgttggcgt ttatggtcag gatcgctcgc gcattctgga
    11701 accgggcatg gtactgaccg tagagccagg gctgtatatt gcgccggatg cagaagtgcc
    11761 agaacaatat cgcggtatcg gcattcgtat tgaagacgac attgtgatta ccgaaaccgg
    11821 taacgaaaac ctcaccgcca gcgtggtgaa aaagccggaa gaaatcgaag cgttgatggc
    11881 tgctgcgaga aagcaatgag cgtaatcatc gtcggtggcg gcatggcggg cgcgacgctg
    11941 gcgctggcta tttcccggtt aagtcacggg gcgctgccgg tacatttgat tgaagcgact
    12001 gcgccagagt cacatgctca tccgggcttt gatggacgag cgatagcgct ggcggcgggt
    12061 acctgtcagc aactggcgcg catcggcgtc tggcaatctc tggcggattg cgcaactgcc
    12121 atcaccaccg tgcatgtcag cgatcgtggt cacgctggat ttgtcaccct cgccgcagaa
    12181 gattaccaac tggcggcgct gggacaggtt gtcgaattgc acaatgtcgg gcaacggctg
    12241 tttgcattgc tgcgtaaagc acctggcgta acgctgcatt gccctgatcg cgtggctaac
    12301 gttgcccgta ctcagagtca cgttgaagtg acgctggaga gtggcgagac gctgacgggc
    12361 cgcgtgctgg tagcagctga tggcacccat tcagcgttag ccaccgcgtg cggcgttgac
    12421 tggcagcagg agccttacga acaactggcc gtgattgcca acgttgcgac ttccgttgcg
    12481 cacgaaggcc gcgcttttga acgcttcacg caacatggcc cgctggcgat gttgccgatg
    12541 tctgacggac gctgttcgct ggtctggtgt catccactgg aacggcgcga agaggtgctg
    12601 tcgtggagcg acgagaagtt ttgccgtgaa ctccagtcgg cctttggctg gcgacttgga
    12661 aaaattaccc acgccggtaa acgcagtgct tatccgctgg cgttaacccg cgccgccaga
    12721 gctattaccc atcgtaccgt gctggtgggc aatgcggcgc aaactctgca cccgattgcc
    12781 gggcaagggt ttaacctcgg tatgcgagat gtcatgagcc ttgcggaaac cctgactcag
    12841 gcgcatgagc gcggagaaga catcggtgat tacggcatat tgtgccgcta tcagcagcgt
    12901 cgacagagcg atcgcgaagc aaccatcggc gtcacggaca gcctggtaca tctttttgcc
    12961 aaccgttggg caccgctggt tgtcgggcgc aacatcggac tgatgacgat ggaattattc
    13021 accccggcac gcgatgtgct ggcgcagcgc accctcggtt gggtggcgcg ttgaaggcgg
    13081 ttttaaggaa taaacaatgc aaagtgttga tgtagccatt gttggtggcg gcatggtggg
    13141 gctggcggtt gcctgcggct tacaggggag cggcttacgc gttgccgtac tggagcagcg
    13201 cgtaccggaa cctctggcgg cggatgcacc accacaactg cgcgtttcgg ctatcaatgc
    13261 cgccagcgaa aaattactca cccgtcttgg cgtctggcag gacattctct ctcgtagggc
    13321 cagttgttat cacggtatgg aagtgtggga caaagacagt tttggtcaca tttcgtttga
    13381 cgatcaaagc atgggctata gccatcttgg gcatatcgtt gaaaactcag tgattcacta
    13441 cgcgctgtgg aacaaagcgc agcagtcgtc agatatcact ctgttggccc ccgcagaatt
    13501 acagcaggtc gcctggggag aaaatgaaac tttcctgacg ctgaaagatg gcagcatgtt
    13561 aacggcgcgt ctggtgattg gcgcggacgg tgctaattcc tggttgcgca acaaagcaga
    13621 tatttcgctg actttctggg attatcagca tcacgcgctg gtagcgacca ttcgcacgga
    13681 agaaccgcat gatgcggtgg cgcggcaggt tttccatggc gaaggcattc tggccttttt
    13741 accgcttagc gatccgcatc tttgctcaat tgtctggtca ctgtcgccag aggaagcgca
    13801 gcggatgcag caggcaagtg aagatgaatt taatcgcgcg ttaaatatcg cttttgataa
    13861 tcgcctgggc ttatgcaagg ttgagagcgc gcgtcaggtg ttcccactga cggggcgtta
    13921 tgcgcgccag tttgccgcgc accgtctggt gctagtgggc gacgccgcgc ataccattca
    13981 cccgctggcg gggcagggag taaatctcgg ctttatggat gctgcagagc tgattgctga
    14041 actgaaacgg ttgcatcgtc aggggaaaga catcgggcag tacatttacc tgcgccggta
    14101 tgagcgtagc cgcaagcaca gtgcggcgct gatgctggct ggtatgcagg gattccgcga
    14161 tctgttttcc ggtaccaatc cggcgaaaaa actgctgcgt gatattggtt tgaaactggc
    14221 cgacacgctt cctggcgtta aaccacaact tatccgccag gcaatgggat taaacgattt
    14281 gcctgaatgg ctgcgttaaa aatttctctt ctgctgttta tttgataccc atcacacttt
    14341 catctcccgg ttttttcgcc gggagatttt cctcatttga aataaactaa tttcacctcc
    14401 gttttcgcat tatattttct aatgtcatta ttttttgatt tagtgttttt tgacattttt
    14461 ttagctctta atattgcctt attcaaatta gctttctaat ggcatcatct ttatatagaa
    14521 actggtgtgt tttttggttt tttattctgt cgcgattttg gcgtttttta accataagct
    14581 aatgtgatga tcaattttac cttatggtta acagtctgtt tcggtggtaa gttcaggcaa
    14641 aagagaacga ttgcgttggg gaccgggagt ggctccgatg ctgggtttcg tggtgataat
    14701 ttcaccatga aaagttgtca gccccgctta ttcaatgagg acaagatggc acaacagact
    14761 cctttgtacg aacaacacac gctttgcggc gctcgcatgg tggatttcca cggctggatg
    14821 atgccgctgc attacggttc gcaaatcgac gaacatcatg cggtacgtac cgatgccgga
    14881 atgtttgatg tgtcacatat gaccatcgtc gatctccgcg gcagccgcac ccgggagttt
    14941 ctgcgttatc tgctggcgaa cgatgtggcg aagctcacca aaagcggcaa agccctttac
    15001 tcggggatgt tgaatgcctc tggcggtgtg atagatgacc tcatcgtcta ctactttact
    15061 gaagatttat tccgcctcgt tgttaactcc gccacccgcg aaaaagacct ctcctggatt
    15121 acccaacacg ctgaaccttt cggcatcgaa attaccgttc gtgatgacct ttccatgatt
    15181 gccgtgcaag ggccgaatgc gcaggcaaaa gctgccacac tgtttaatga cgcccagcgt
    15241 caggcggtgg aagggatgaa accgttcttt ggcgtgcagg cgggcgatct gtttattgcc
    15301 accactggtt ataccggtga agcgggctat gaaattgcgc tgcccaatga aaaagcggcc
    15361 gatttctggc gtgcgctggt ggaagcgggt gttaagccat gtggcttggg cgcgcgtgac
    15421 acgctgcgtc tggaagcggg catgaatctt tatggtcagg agatggacga aactatttct
    15481 cctttagccg ccaacatggg ctggactatc gcctgggaac cggcagatcg tgactttatc
    15541 ggtcgtgaag ccctggaagt gcagcgtgag catggtacag aaaaactggt tggtctggtg
    15601 atgaccgaaa aaggcgtgct gcgtaatgaa ctgccggtac gctttaccga tgcgcagggc
    15661 aaccagcatg aaggcattat caccagcggt actttctccc cgacgctggg ttacagcatt
    15721 gcgctggcgc gcgtgccgga aggtattggc gaaacggcga ttgtgcaaat tcgcaaccgt
    15781 gaaatgccgg ttaaagtgac aaaacctgtt tttgtgcgta acggcaaagc cgtcgcgtga
    15841 tttacttttt tggagattga ttgatgagca acgtaccagc agaactgaaa tacagcaaag
    15901 aacacgaatg gctgcgtaaa gaagccgacg gcacttacac cgttggtatt accgaacatg
    15961 ctcaggagct gttaggcgat atggtgtttg ttgacctgcc ggaagtgggc gcaacggtta
    16021 gcgcgggcga tgactgcgcg gttgccgaat cagtaaaagc ggcgtcagac atttatgcgc
    16081 cagtaagcgg tgaaatcgtg gcggtaaacg acgcactgag cgattccccg gaactggtga
    16141 acagcgaacc gtatgcaggt ggctggatct ttaaaatcaa agccagcgat gaaagcgaac
    16201 tggaatcact gctggatgcg accgcatacg aagcattgtt agaagacgag taacggcttt
    16261 attcctcttc tgcgggagag gatcagggtg aggaaaattt atgcctcacc ctcactctct
    16321 tcgtaaggag agaggttcac aattcactgc acgtttcagg aaccatcgct catgacacag
    16381 acgttaagcc agcttgaaaa cagcggcgct tttattgaac gccatatcgg accggacgcc
    16441 gcgcaacagc aagaaatgct gaatgccgtt ggcgcacaat cgttaaacgc gctgaccggc
    16501 cagattgtac cgaaagatat tcagcttgcg accccgccgc aggttggcgc accggcgacc
    16561 gaatacgccg cactggcaga actcaaggct attgccagtc gcaataaacg cttcacgtct
    16621 tacatcggca tgggttacac cgccgtgcag ctaccgccgg ttatcctgcg taacatgctg
    16681 gaaaatccgg gctggtatac cgcgtacact ccgtatcaac ctgaagtctc ccagggccgc
    16741 cttgaagcac tgctcaactt ccagcaggta acgctggatt tgactggact ggatatggcc
    16801 tctgcttctc ttctggacga ggccaccgct gccgccgaag caatggcgat ggcgaaacgc
    16861 gtcagcaaac tgaaaaattc caaccgcttc ttcgtggctt ccgatgtgca tccgcaaacg
    16921 ctggatgtgg tccgtactcg tgccgaaacc tttggttttg aagtgattgt cgatgacgcg
    16981 caaaaagtgc tcgaccatca ggacgtcttc ggcgtgctgt tacagcaggt aggcactacc
    17041 ggtgaaattc acgactacac tgcgcttatt agcgaactga aatcacgcaa aattgtggtc
    17101 agcgttgccg ccgatattat ggcgctggtg ctgttaactg cgccgggtaa acagggcgcg
    17161 gatattgttt ttggttcggc gcaacgcttc ggcgtgccga tgggctacgg tggcccacac
    17221 gcggcattct ttgcggcgaa agatgaatac aaacgctcaa tgccgggccg tattatcggt
    17281 gtatcgaaag atgcagctgg caataccgcg ctgcgcatgg cgatgcagac tcgcgagcaa
    17341 catatccgcc gtgagaaagc gaactccaac atttgtactt cccaggtact gctggcaaac
    17401 atcgccagcc tgtatgccgt ttatcacggc ccggttggcc tgaaacgtat cgctaaccgc
    17461 attcaccgtt tgaccgatat cctggcggca ggcctgcaac aaaaaggtct gaagctgcgc
    17521 catgcgcact atttcgacac tctgtgtgtg gaagtggccg acaaggcggg cgtactggcg
    17581 cgtgccgaag cggctgaaat caacctgcgt agcgatatcc tgaacgcggt tgggatcacc
    17641 cttgatgaaa ccaccacgcg tgaaaacgta atgcagcttt tcagcgtgct gctgggcgat
    17701 aaccacgggc tggagatcga cacgctggac aaagacgtgg ctcacgacag ccgctctatt
    17761 cagcctgcga tgctgcgcga cgacgaaatc ctcactcatc cggtgtttaa tcgctaccac
    17821 agcgaaaccg aaatgatgcg ctatatgcac tcgctggagc gtaaagatct ggcgctgaat
    17881 caggcgatga tcccgctggg ttcctgcacc atgaaactga actccgccgc cgagatgatc
    17941 ccaatcacct ggccggaatt tgccgaactg cacccgtttt gcccgccgga acaggctgaa
    18001 ggttatcagc agatgattgc gcagctggct gactggctgg tgaaactgac cggttacgac
    18061 gccgtttgta tgcagccgaa ctccggcgca cagggcgaat acgcgggcct gctggcgatt
    18121 cgtcattatc atgaaagccg caacgaaggg catcgcgata tctgcctgat cccggcttct
    18181 gcgcacggaa ctaaccccgc ttctgcacat atggcaggaa tgcaggtggt ggttgtggcg
    18241 tgtgataaaa acggcaacat cgatctgact gatctgcgcg cgaaagcgga acaggcgggc
    18301 gataacctct cctgtatcat ggtgacttat ccctctaccc acggcgtgta tgaagaaacg
    18361 atccgtgaag tgtgtgaagt cgtgcatcag ttcggcggtc aggtttacct tgatggcgcg
    18421 aacatgaacg cccaggttgg catcacctcg ccgggcttta ttggcgcgga cgtttcgcac
    18481 ctcaacctgc ataaaacttt ctgcattccg cacggcggtg gtggtccggg tatgggaccg
    18541 atcggtgtga aagcgcatct ggcaccgttt gtaccgggtc atagcgtggt gcaaatcgaa
    18601 ggcatgttaa cccgtcaggg cgcagtttct gcggcaccgt tcggtagcgc ctctatcctg
    18661 ccaatcagct ggatgtacat ccgcatgatg ggcgcagaag ggctgaaaaa agcaagccag
    18721 gtggcaatcc tcaacgccaa ctatattgcc agccgcctgc aggatgcctt cccggtgctg
    18781 tataccggtc gcgacggtcg cgtggcgcac gaatgtattc tcgatattcg cccgctgaaa
    18841 gaagaaacca gcatcagcga gctggatatt gccaagcgcc tgatcgacta cggtttccac
    18901 gcgccgacga tgtcgttccc ggtggcgggt acgctgatgg ttgaaccgac tgaatctgaa
    18961 agcaaagtgg aactggatcg ctttatcgac gcgatgctgg ctatccgcgc agaaattgac
    19021 caggtgaaag ccggtgtctg gccgctggaa gataacccgc tggtgaacgc gccgcacatt
    19081 cagagcgaac tggtcgccga gtgggcgcat ccgtacagcc gtgaagttgc ggtattcccg
    19141 gcaggcgtgg cagacaaata ctggccgacg gtgaaacgtc tggatgatgt ttacggcgac
    19201 cgtaacctgt tctgctcctg cgtaccgatt agcgaatacc agtaattcac tgattcgact
    19261 attttctaaa ggagcttcgg cgccttttta gtcagatgac aaagtacaaa agtgctcaga
    19321 cagtcccctc gcccctttgg ggagagggtt agggtgaggg gaacaggccg gcactggcgc
    19381 gaatatttac cctcaccccg gccctctccc tgaaagggcg aggggaaaag cgtgccaaca
    19441 ttgaagattg agccagtttg ttagcaatct caaagatacg tcaacgaatt aatttttctc
    19501 ggaaaaacaa atggctatag cacttgtgac cggtggcagt cgcggcatcg ggcgggcaac
    19561 tgcattactg ttggcgaaag aagagtatac ggtggcggtt aattatcaac aaaacctcca
    19621 tgcggcgcag gaagtggtga acttaatcac gcaagccggt ggcaaggcat tcgtgctcca
    19681 ggcggatatc agcgacgaaa atcaggtcat agcaatgttt acagcaatcg atcagcacga
    19741 tgaaccgcta gcagcgctgg tcaataacgc cgggatcttg tttacccagt gcaccgttga
    19801 aaaccttacc gcagagcgaa tcaaccgagt actttccacc aacgtgacgg gatattttct
    19861 ctgctgccgc gaggcggtaa aacgcatggc gcttaaaaat ggtggcagtg gcggcgctat
    19921 cgtcaatgtc tcttcggtgg cctcacggtt gggttcgcca ggggaatatg ttgattacgc
    19981 ggcatcgaaa ggggcgattg atacgttaac caccggacta tcgctggaag tcgccgcgca
    20041 ggggatccgc gttaactgcg tgcggccagg gtttatttat accgaaatgc acgccagcgg
    20101 cggcgagctt ggacgcgtcg atcgcgttaa gtcgaacatc cccatgcagc gtggtggaca
    20161 ggcagaagag gtcgcgcagg ccattgtctg gctactaagt gataaagcct cttacgtcac
    20221 gggaagtttt atcgatttgg cgggcgggaa ataaaacagg gaagttgtct gaccggatgc
    20281 aacaagtatt gcatccggta cttcatcgac ttaaagcttc tcgccgttgc tggcaatcac
    20341 ctctttgtac cagttaaagc tcttcttacg tgaacgcgac atatcgccag taccgtcgtc
    20401 atgtttattc acatagataa agccgtagcg tttgctgtac tgcccggtag tgaatgacac
    20461 gcagtcgatg cagccccaca gtgtgtagcc catcagatcc acaccatcgt aagtcactgc
    20521 ttttttcatc tcttcaatat gggcgcgcag gtagtcaatg cggtagtcgt cgttgatgca
    20581 gccatcttct tccactttgt cgtaagcgcc aaaaccgttt tcgacaataa acagcggcct
    20641 ctgataacgc tcatacagtt cgcaaagggc atagcgcaga cctactggat caatctgcca
    20701 gccccagtca gacgctttaa catacgggtt cggtacgctg ccttcaaaac cagagatcgc
    20761 atcgccggtg ccgccttcgg ccttcactgc gttgatcatg taatagctga aaccaagata
    20821 atcgcaggtg ccttcacgca gtacatccag atcgccatct tccattttga tgttaaatcc
    20881 gcgacgctcc cactcgttca acacatagga cgggtaatag ccgcgtagct gcacatcggt
    20941 aaagacgtag cgttcgcgca tcgactcctg agcgaacatc acatcgtccg ggttacagga
    21001 gtaaggatag agcggcacca tcgccagcat acagctgact ttcatctccg ggttaatgcg
    21061 acgcgcggct ttcactgcca gggcgctggc gacaaactgg tgatgcagca cctggtacat
    21121 cgtctcttcc gggttgtcat gctcggtata caccacgccg gagcagcagt aaccaaacag
    21181 cggcgcacgc cagttacgct ggttgtttat ttcgttgaag gtcatccagt atttgacttt
    21241 atgcttgtag cgttcgaata ccacttccgc gaaacggaca aagaaatcaa cgactttacg
    21301 gttggtccag ctaccgtatt gctgcaccag atgcagcggt atttcaaagt gggagagggt
    21361 tatcaccggt tcgatgttgt atttcagcag ttcatcgaac agagagtcgt aaaacttcag
    21421 cccttcttcg tttggctgag cttcatcacc ttttggaaaa atacgcgtcc aggcgatgga
    21481 agtccgaaaa catttgaagc ccatttcggc aaatagcttg atgtcttcct tgtagtgacc
    21541 ataaaaatca acggcttcat ggtttggata gtattttcct ggcaagactt ctttggtgat
    21601 ttcgcgcggc acgccgtgtg cgccaccggt cagaacgtca caaatgctcg gtcctttgcc
    21661 gcctttgttc cagccgcctt cgacctgatg agcggcaacg gcgccacccc ataagaaatc
    21721 tttcggtaag gtgagttttt tcactatcat aggctccaga tgagtcaatt cttacaggaa
    21781 atagtaccat gcagccaaac gacatcactt tttttcaacg tttccaggat gacattatgg
    21841 ctgggcgtaa aaccatcacc atccgcgacg agtctgaatc gcacttcaaa acgggtgatg
    21901 tgcttcgtgt cggacgtttt gaagatgacg gttatttttg cacgattgaa gtcaccgcaa
    21961 cctcaaccgt aacgctggat acgctgacgg aaaaacatgc agagcaggaa aatatgaccc
    22021 tgactgaact gataaaggtc attgccgaca tctatcccgg tcagacacag ttttatgtga
    22081 ttgaatttaa atgtctttaa attgaactca cgcctgttag ttgaaatttc tcatttaatt
    22141 tcatgatttt taggagatta gtctcaaatc agaatttatt ttagctaaca ggtgttcact
    22201 ggaactattc tcagttacgc tggagaggta tacatgtgcg tgtacgtttc tccggagtaa
    22261 gttatggttc agaagcccct cattaagcag ggatattcgc tggcagagga aattgccaac
    22321 agcgtcagtc acggcattgg gttggtgttt ggtatcgttg ggctggtgtt gctactggtt
    22381 caggcggtgg atctcaatgc cagcgccaca gcgataacca gctacagcct ctatggcggc
    22441 agtatgatcc tgctgttcct cgcttcgacg ctctatcacg ccattcctca tcaacgggca
    22501 aaaatgtggc tgaagaaatt tgaccattgc gctatttacc tgttgattgc cggaacctac
    22561 acgccgtttt tgctggtggg gctggattct ccgttagcgc gcgggttgat gattgttatc
    22621 tggagcctgg cattgctggg gattctgttt aaactgacca tcgcgcaccg attcaaaatt
    22681 ttatctctgg tgacctatct ggcgatgggc tggctgtcgc tggtggtaat ttatgaaatg
    22741 gcagttaagc tcgcggcggg cagcgttacc ttactggcgg taggcggcgt ggtttattcg
    22801 ctcggagtga ttttctatgt ctgcaaacgc attccctaca atcatgccat ctggcacggc
    22861 ttcgtgctcg gcggcagtgt gtgccacttt ctggcgatct atttgtatat tgggcaggcg
    22921 taataggtat gcctttgtag gcctgataag acgcgccagc gtcgcatcag gcatcggagc
    22981 gcaaccgccg gatgcggcgt gaacgcctta tccgatctac gggcctcgtc cctgttgtga
    23041 taaaggcatc aaatcccaga catgataaga cgcgtcagcg tcgcatcagg cgataaatgc
    23101 ctgatgcgat acagagattt actcttcgag tgaatacggc agcggctcga tatgcagtgt
    23161 attcgcatcg tcgcgtacgc ggaagatgct gtccggttcc atatcgttat tcatgacgac
    23221 ctgtaccacg acctgaccat cttccagttt taccgcagcc agcaccgtac cggtacgacg
    23281 ccagttctcg cccattttca gctctaagtc ttcaccagct tccggcagtc ggctggcgct
    23341 acctgccagc aaccagagcg cacgtttatt ggcaccacgg aattttgctc gcgccaccat
    23401 ctcttgtccg gtataacagc ctttcttaaa actgataccg cccagcgcct ggagattggt
    23461 cgcctgtggg ataaactgcc cgctgttcgc ggcatcaatc accgggaaac ccgcttcaat
    23521 gtttaatgcc agccactgtt ggctattgtt cagttccgct tcaccgcgca gtttatcggt
    23581 cagcatattg gcagtagctt catcggttac gatcaggaaa cgttctgccg ggtgttcaaa
    23641 ccatagcaaa gtggtcgcgc cttctttaac tacctgtttt tctctcgaag gtagttcact
    23701 aaagagattg gcgagcgcgg cgcgcgcctg aaaaccggca acaccaagca gcacacgctc
    23761 gtcgtctggc gcgatggtca ctttagagaa caccgcatat tttttcagtt cagtcagctg
    23821 cggttcacgc acgctgcgcc gttcaatcca cgcaaagcca tcgccgtcgc ggaacagacg
    23881 taaattgctc cacattttac ctttggcgtc gcaatgggcg gcgagcaggt gctgattttc
    23941 tgtcatctgg ctgacatctg ctgtcacctg accctgcata tatttttcgc tgtccgcgcc
    24001 agtaatggtg gcaagcgccc agtcatcaag cgtcatcagc gtcagcggta aacgggcaga
    24061 agccgtaggc tgacggggag gaaaaggtgt aaaagccata atagagtcct gagttgctta
    24121 acggcgtatt aataactaat ggtaaaagag ctatgaggca atgcaagtgc tttcactacg
    24181 cgatctgtgc cttctgcgag gcgacttcca aaaaaatgaa gctcttgaat tgttgtgaat
    24241 taatttcgcg atcgcgatgg tgtttactga tattcccgta aaagaagtcg aaaaacacgt
    24301 tacaatagcc gggtactgga ttttcgtgag acaggaagaa gatggacatt aacaacaaag
    24361 cccgcattca ttgggcatgc cgccgtggta tgcgcgaact cgatatttca atcatgccgt
    24421 ttttcgaaca tgagtacgac agcttaagcg atgacgaaaa acgcatcttt attcgtctgc
    24481 tggaatgtga cgatccggac ctgtttaact ggctgatgaa tcacggtaaa ccggccgatg
    24541 cagaactgga aatgatggtc cgactcatcc agacacggaa ctgggaacgt ggtcctgtgg
    24601 caatctgatt tgcgcgtctc ctggcgcgca cagtggcttt ccttgctgat tcatgggctg
    24661 gttgccgctg ttattttact catgccctgg ccgctcagtt acaccccgtt atggatggtg
    24721 ttactttcgc tggtggtatt tgattgcgtt cgcagccagc ggcgtattaa tgctcgccag
    24781 ggggaaattc gattgttgat ggacgggcgt ttgcgttggc aagggcagga gtggagcatc
    24841 gtcaaagcac cgtggatgat taagagcggc atgatgctgc gtttacgttc tgatggcggt
    24901 aaacggcaac atttatggct ggcagccgac agcatggacg aagctgaatg gcgggattta
    24961 cggcggattt tgttgcaaca agagacgcaa agataaatat gacggcaaag catatgcgct
    25021 aagccgtcag tgagatcagg cgtaatgctc tgccatttcg ttgaggattt gctcgcacca
    25081 gctctgaata cgctcgtcgc taaggtcata ctggttagtt tcatccagcg ccagacccac
    25141 gaacagttgc ccgtcagcaa tcaccggttt cgggctggta aattcatatc cttccgttgg
    25201 ccagtagccg acgaacttca cgcctttggt cgagagtttg tcatgcagca taccgagcgc
    25261 atcgaggaac cactcgccgt atcccagttg atcgccaagc ccatacagtg caacaatttt
    25321 accttcaagg ttcaggtcgt cgagctgatc ccagacggct tcccagtctt cctggatttc
    25381 gccaaaatcc caggtcggga tacccagaat gagcacatcg tactgctcca ttaatttcgg
    25441 ggagtcgtcc ttgaggttat gtaaggtcac cagttctggg ccgataatat cgcggatttt
    25501 ttctgccgcc atttcggtgt aacaggtgct ggaaccgtaa aaaagaccca tattcataac
    25561 gtaagcttct cgattctgct gtggcttttg cggctagtgt atcagaatcg ctttagtcac
    25621 ggcacaataa ggcataatgg atcaaatgag tgaccataag gggcgcaagt gaaacaggat
    25681 ctggcacgca tcgagcagtt tcttgatgct ctgtggctgg aaaaaaatct ggctgaaaat
    25741 acgttgaacg cttaccgtcg cgatctgtca atgatggtgg agtggttgca tcaccgcggg
    25801 ttgacgctgg cgacggcgca aagtgacgat ttgcaggcat tactggcaga acggctagag
    25861 ggcgggtata aagccaccag ctcagcgcgt ttgctgagtg cagtgcgccg attgttccag
    25921 tatctttatc gcgaaaagtt tcgtgaagac gatcccagtg cgcatctcgc ttcaccgaaa
    25981 ttgccacagc gtttgccaaa agatttaagc gaagcgcagg tcgaacgttt attacaggca
    26041 ccattaattg atcagccact ggagctacgc gataaagcca tgcttgaagt gttgtatgct
    26101 accgggctgc gtgtctctga actggtcggg ctgacaatga gtgatatcag cctacgtcag
    26161 ggcgtagtgc gggtcattgg taaaggcaac aaagagcgcc tggtgccgtt aggtgaagag
    26221 gccgtttact ggctggaaac ctatctggaa catgggcgtc cgtggctgtt gaatggtgtg
    26281 tcaattgacg tgttgtttcc cagccagcgt gcgcagcaga tgacgcgaca gaccttctgg
    26341 caccgcatta aacattatgc cgtgctggcg ggtatcgaca gcgaaaagct gtcaccgcat
    26401 gtgttgcgtc acgcttttgc cactcattta ttaaatcatg gtgcggattt acgcgtggtg
    26461 cagatgctac tgggccacag cgatctctcc accacgcaaa tttatacgca tgtcgctacc
    26521 gagcgtctgc ggcaacttca tcaacagcat cacccgcggg cgtgatgtct gaaaagaacg
    26581 ggaagattta tgaagaaagg ttttatgttg tttactttgt tagcggcgtt ttcaggcttt
    26641 gctcaggctg atgacgcggc aattcaacaa acgttagcca aaatgggcat taaaagcagc
    26701 gatattcagc cagcacccgt ggctggcatg aagactgtgc tgactaacag cggtgtgttg
    26761 tacatcaccg atgacggtaa acatatcatt caggggccaa tgtatgacgt tagtggcgcg
    26821 gctccggtca atgtcaccaa taaaatgctg ctaaagcagt tgaatgcgct tgaaaaagag
    26881 atgatcgttt ataaagcgcc gcaggaaaaa cacgtcatca ccgtgtttac tgatattacc
    26941 tgtgggtact gccacaaact gcatgagcaa atggcagact acaacgcgct ggggatcacc
    27001 gtgcgttatc ttgctttccc gcgccagggg ctggagagcc aggctgagca acaaatgaaa
    27061 gccatctggt gtgcgaaaga taaaaacaaa gcgtttgatg atgtgatggc tggtaaagct
    27121 gccactccgg caagttgcga tatcgatatt gccgatcatt acgcacttgg cgtccagctt
    27181 ggcgttagcg gcactccggc aattgtgctg agcaatggca cacttgttcc gggttaccag
    27241 ccgccgaaag agatgaaaga attcctcgac gaacaccaaa aaatgaccag cggtaattaa
    27301 ttcgcgtgaa acaacagata caacttcgtc gccgtgaagt cgatgaaacg gcagacttgc
    27361 ccgctgaatt gcctcccttg ctgcgccgtt tatacgccag ccggggagta cgcagtgcgc
    27421 aagaactgga acgcagtgtt aaaggtatgt tgccctggca gcaactaagc ggtgtcgaaa
    27481 aggccgttga gatcctttac aacgcttttc gcgaaggaac gcggattatt gtggtcggtg
    27541 atttcgacgc cgacggcgcg accagcacgg ctctaagcgt gctggcgatg cgcccgcttg
    27601 gttgcagcaa tatcgactac ctggtaccaa accgtttcga agacggttac ggcttaagcc
    27661 cggaagtggt cgatcaggcc catgcccgtg gcgcgcagtt aattgtcacg gtggataacg
    27721 gtatttcctc ccatgcgggg gttgaacacg ctcgctcgtt gggcattccg gttattgtta
    27781 ccgatcacca tttgccaggc gaaacattac ccgcggcgga agcgatcatt aaccctaact
    27841 tgcgcgactg taatttcccg tcgaaatcac tggcaggcgt gggtgtggcg ttttatctga
    27901 tgctggcgct gcgcaccttt ttgcgcgatc agggctggtt tgatgagcgc ggcatcgcaa
    27961 ttcctaacct ggcagaactg ctggatctgg tcgcgctggg gacagtggcg gacgtcgtgc
    28021 cgctggacgc taataatcgc attctgacct ggcaggggat gagtcgcatc cgtgccggaa
    28081 agtgccgtcc agggattaaa gctctgctgg aagtggcaaa ccgtgatgca caaaaactcg
    28141 ccgccagcga tttaggtttt gcgctggggc cacgtctcaa tgctgccggg cgactggacg
    28201 atatgtccgt cggtgtggcg ctgttgctgt gcgacaacat cggcgaagcg cgcgtgctgg
    28261 caaatgaact cgatgcgcta aatcagacgc gaaaagagat cgaacaagga atgcagattg
    28321 aagccttgac cctgtgcgag aaactggagc gaagtcgcga cacgctaccc ggcgggctgg
    28381 caatgtatca ccccgaatgg catcagggcg ttgtcggtat tctggcttcg cgcatcaaag
    28441 agcgttttca ccgtccggtt atcgcctttg cgccagcagg tgatggtacg ctgaaaggtt
    28501 ccggtcgctc cattcagggg ctgcatatgc gtgatgcgct ggagcgatta gacacactct
    28561 accccggtat gatgctgaag tttggcggtc atgcgatggc ggcgggtttg tcgctggaag
    28621 aggataaatt cgaactcttt caacaacggt ttggcgagct ggttaccgag tggctggacc
    28681 cttcgctatt gcaaggcgaa gtggtgtcag acggcccgtt aagcccggcc gaaatgacca
    28741 tggaagtggc gcagctgctg cgcgatgctg gcccgtgggg gcagatgttc ccggagccgc
    28801 tgtttgatgg tcatttccgt ctgctgcaac agcggctggt gggcgaacgt catttgaaag
    28861 tcatggtcga accggtcggc ggcggtccgc tgctggatgg tattgctttt aatgtcgata
    28921 ccgccctctg gccggataac ggcgtgcgcg aagtgcaact ggcttacaag ctcgatatca
    28981 acgagtttcg cggcaaccgc agcctgcaaa ttatcatcga caatatctgg ccaatttagc
    29041 gtcatcttct ctataaaaaa gagcgtggat tgggtacaat cccgctctta tcaccgcatt
    29101 ttgactagct caataaaaga aatcagacca tgtttgaaat taatccggta aataatcgca
    29161 ttcaggacct cacggaacgc tccgacgttc ttagggggta tctttgacta cgacgccaag
    29221 aaagagcgtc tggaagaagt aaacgccgag ctggaacagc cggatgtctg gaacgaaccc
    29281 gaacgcgcac aggcgctggg taaagagcgt tcctccctcg aagccgttgt cgacaccctc
    29341 gaccaaatga aacaggggct ggaagatgtt tctggtctgc tggaactggc tgtagaagct
    29401 gacgacgaag aaacctttaa cgaagccgtt gctgaactcg acgccctgga agaaaaactg
    29461 gcgcagcttg agttccgccg tatgttctct ggcgaatatg acagcgccga ctgctacctc
    29521 gatattcagg cggggtctgg cggtacggaa gcacaggact gggcgagcat gcttgagcgt
    29581 atgtatttgc gctgggcaga atcgcgtggt ttcaaaactg aaatcatcga agagtcggaa
    29641 ggtgaagtgg cgggtattaa atccgtgacg atcaaaatct ccggcgatta cgcttacggc
    29701 tggctgcgta cagaaactgg cgttcaccgc ctggtgcgta agagcccgtt tgactccggt
    29761 ggtcgtcgcc acacgtcgtt cagctccgcg tttgtttatc cggaagttga tgatgatatt
    29821 gatatcgaaa tcaacccggc ggatctgcgc attgacgttt atcgcgcgtc cggcgcgggc
    29881 ggtcagcacg ttaaccgtac cgaatctgcg gtgcgtatta cccacatccc gaccgggatc
    29941 gtgacccagt gccagaacga ccgttcccag cacaagaata aagaccaggc catgaagcag
    30001 atgaaagcga agctttatga actggagatg cagaagaaaa atgctgagaa acaggcgatg
    30061 gaagataaca aatccgacat cggctggggc agccagattc gttcttatgt ccttgatgac
    30121 tcccgcatta aagatctgcg caccggggtt gaaacccgca atacgcaggc cgtgctggac
    30181 ggcagcctgg atcaatttat cgaagcaagt ttgaaagcag ggttatgagg aaccaacatg
    30241 tctgaacaac acgcacaggg cgctgacgcg gtagtcgatc ttaacaatga actgaaaacg
    30301 cgtcgtgaga agctggcgaa cctgcgtgag cagggaattg ccttcccgaa cgatttccgt
    30361 cgcgatcata cctctgacca attgcacgca gaattcgacg gtaaagagaa cgaagaactg
    30421 gaagcgctga acatcgaagt cgccgttgct ggccgcatga tgacccgccg tattatgggt
    30481 aaagcctctt ttgttaccct gcaggacgtt ggcggtcgta ttcagctgta cgttgcccgt
    30541 gacgatcttc cggaaggcgt ttacaacgag cagttcaaaa aatgggatct cggcgacatc
    30601 ctcggcgcga aaggtaaact gttcaaaacc aaaaccggcg aactgtctat ccactgcacc
    30661 gagctgcgtc tgctgaccaa agcactgcgt ccgctgccgg acaaattcca cggcttgcag
    30721 gatcaggaag cgcgctatcg tcagcgttat ctggatctca tctctaacga tgaatcccgc
    30781 aacaccttta aagtgcgttc gcagatcctc tctggcattc gccagttcat ggtaaatcgc
    30841 ggctttatgg aagttgaaac gccgatgatg caggtgatcc caggcggtgc cgctgcgcgt
    30901 ccgtttatca cccatcataa cgcgctggat cttgacatgt acctgcgtat cgcgccggaa
    30961 ctgtacctca agcgtctggt ggtcggtggc ttcgagcgtg tattcgaaat caaccgtaac
    31021 ttccgtaacg aaggtatttc cgtacgtcat aacccagagt tcaccatgat ggaactctat
    31081 atggcttacg cagattacaa agatctgatc gagctgaccg aatcgctgtt ccgtactctg
    31141 gcacaggata ttctcggtaa gacggaagtc acctacggcg acgtgacgct ggacttcggt
    31201 aaaccgttcg aaaaactgac catgcgtgaa gcgatcaaga aatatcgccc ggaaaccgac
    31261 atggcggatc tggacaactt cgactctgca aaagcgattg ctgaatctat cggcatccac
    31321 gttgagaaga gctggggtct gggccgtatc gttaccgaga tcttcgaaga agtggcagaa
    31381 gcacatctga ttcagccgac cttcattact gaatatccgg cagaagtttc tccgctggcg
    31441 cgtcgtaacg acattaaccc ggaaatcaca gaccgctttg agttcttcat cggtggtcgt
    31501 gaaatcggta acggctttag cgagctgaat gacgcggaag atcaggcgca gcgcttcctg
    31561 gatcaggttg ccgcgaaaga cgcaggtgac gacgaagcga tgttctacga cgaagattac
    31621 gtcaccgcac tggaacacgg cttaccgccg acagcaggtc tgggaattgg tatcgaccgt
    31681 atggtaatgc tgttcaccaa cagccatacc atccgcgacg ttattctgtt cccggcgatg
    31741 cgtccagtaa aataagcatt acgttatgct aataaccccg gcaaatgtcg gggtttttta
    31801 attgtgctgc gcgaaagcag acaacaattt tcttgcttca ctattggctg cctgcattac
    31861 catccacgga ctgaacgccc acggcgtggc atcaataccg tgtaatacat ctgctaaatc
    31921 acaccattga taatccatca cttcatcatc gttgatctgt aacgcactgt tggtgcgtgc
    31981 ggcaaatacc ggacacactt cattttccac aatgccattc ggatcggtgg cgcgatagcg
    32041 aaagtcagga tagatagatt caggaggcgt aatttccacg ccaagctcat aacggcaacg
    32101 gcggatcact gcgtcttcgt tgcgttctcc cagttgtggg tgcccacaaa ccgagttagt
    32161 ccacacgcca ggccatgctt ttttgctcag tgcgcggcgg gtaactaata attgcccctt
    32221 ggcattaaac agccaactgg agaacgcgag atgtaagagg gtgtctgccg tgtgtgcggc
    32281 atacttttcc agcgtacccg tgggaactcc ctgtgcattc aataaaatga cgtgttccgt
    32341 ttgcataatt tctcacatgt aattctgatc actcatcatt atagataatt gaagagtgaa
    32401 atgattaacc aagtgagcgt ttatcgacaa ccgcccgttt tgagcggatg ccgacaggta
    32461 aaaaccattt aaaaaagtag catcatatat ttgaagcgac tttcaatggc cattgcaaca
    32521 cagtcagaaa tgacaggaat agagagagta aaaagcaaca gcagactgaa tatagcgcgc
    32581 attaaaagat ttatattatt ctccatgctc atttttcttc agct
//
LOCUS       DADMHM010000026        32432 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.027, whole genome shotgun sequence.
ACCESSION   DADMHM010000026 DADMHM010000000
VERSION     DADMHM010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 32432)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32432)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32432
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.027"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            197..991
                     /gene="panB"
                     /locus_tag="JN125_001032"
     CDS             197..991
                     /gene="panB"
                     /locus_tag="JN125_001032"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HAY8870888.1"
                     /translation="MKPTTIASLQKCKQDKKRFATITAYDYSFAKLFADEGLNVMLVG
                     DSLGMTVQGHDSTLPVTVADIAYHTASVRRGAPNCLLLADLPFMAYATPEQAFENAAT
                     VMRAGANMVKIEGGEWLVETVKMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDEAG
                     DQLLSDALALEAAGAQLLVLECVPVELAKRITEALAIPVIGIGAGNVTDGQILVMHDA
                     FGITGGHIPKFAKNFLAETGDIRAAVRQYMAEVESGVYPGEEHSFH"
     gene            1003..1854
                     /gene="panC"
                     /locus_tag="JN125_001033"
     CDS             1003..1854
                     /gene="panC"
                     /locus_tag="JN125_001033"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HAY8870889.1"
                     /translation="MLIIETLPLLRQQIRRLRMEGKRVALVPTMGNLHDGHMKLVDEA
                     KARADVVVVSIFVNPMQFDRPEDLARYPRTLQEDCEKLNKRKVDLVFAPSVKEIYPNG
                     TETHTYVDVPGLSTMLEGASRPGHFRGVSTIVSKLFNLVQPDIACFGEKDFQQLALIR
                     KMVADMGFDIEIVGVPIMRAKDGLALSSRNGYLTAEQRKIAPGLYKVLSSIADKLQAG
                     ERDLDEIIAIAGQELNEKGFRADDIQIRDADTLLEVSETSKRAVILVAAWLGDARLID
                     NKIVELA"
     gene            complement(2146..3042)
                     /locus_tag="JN125_001034"
     CDS             complement(2146..3042)
                     /locus_tag="JN125_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rpn family recombination-promoting
                     nuclease/putative transposase"
                     /protein_id="HAY8870890.1"
                     /translation="MDAPSTTPHDAVFKQFLMHAETARDFLEIHLPVELRELCDLNTL
                     HLESGSFIEESLKGHSTDVLYSVQMQGNPGYLHVVIEHQSKPDKKMAFRMMRYSIAAM
                     HRHLEADHDKLPLVVPILFYQGEATPYPLSMCWFDIFYSPELARRVYNSPFPLVDITI
                     TPDDEIMQHRRIAILELLQKHIRQRDLMLLLEQLVTLIDEGYTSGSQLVAMQNYMLQR
                     GHTEQADLFYGVLRDRETGGESMMTLAQWFEEKGIEKGIQQGRQEERQEFAQRFLSKG
                     MSREDVAEMTNLSLAEIDRLIN"
     gene            3316..3696
                     /gene="panD"
                     /locus_tag="JN125_001035"
     CDS             3316..3696
                     /gene="panD"
                     /locus_tag="JN125_001035"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HAY8870891.1"
                     /translation="MIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAI
                     DIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWR
                     PNVAYFEGDNEMKRTAKAIPVQVA"
     gene            complement(3700..4539)
                     /locus_tag="JN125_001036"
     CDS             complement(3700..4539)
                     /locus_tag="JN125_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HAY8870892.1"
                     /translation="MRYPILHKLKDRLNQTWYQIRIGDRLAYISALDAQPDNGLPVLT
                     YHHILRDEENTRFRHTSTTTSVRAFNNQMAWLRDRGYATLSMVQLEGYVKNKINLPAR
                     AVVITFDDGLKSVSRYAYPVLKQYGMKATAFIVTSRIKRHPQKWDPKSLQFMSVSELN
                     EIRDVFDFQLHTHFLHRVDGYRRPILLSRSEHNILFDFARSRRALAQFNPHVWYLSYP
                     FGGFNDKAVKAANDAGFHLAVTTMKGKVKPGDNPLLLKRLYILRTDSLETMSRLVSNQ
                     PQG"
     gene            complement(4517..4886)
                     /locus_tag="JN125_001037"
                     /pseudo
     CDS             complement(4517..4886)
                     /locus_tag="JN125_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004980383.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase"
     gene            complement(4981..5421)
                     /locus_tag="JN125_001038"
     CDS             complement(4981..5421)
                     /locus_tag="JN125_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HAY8870893.1"
                     /translation="MLGWVITCHDDRAQEILDALEKKHGALLQCRAVNFWRGLSSNML
                     SRMMCDALHEADSGEGVIFLTDIAGAPPYRVASLLSHKHSRCEVISGVTLPLIEQMMA
                     CRETMTSSEFRERIVELGAPEVSSLWHQQQKNPPFVLKHNLYEY"
     gene            complement(5526..6296)
                     /locus_tag="JN125_001039"
     CDS             complement(5526..6296)
                     /locus_tag="JN125_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAY8870894.1"
                     /translation="MMHLYWVALKSIWAKEIHRFMRIWVQTLVPPVITMTLYFIIFGN
                     LIGSRIGDMHGFSYMQFIVPGLIMMSVITNAYANVASSFFGAKFQRNIEELLVAPVPT
                     HVIIAGYVGGGVARGLFVGILVTAISLFFVPFQVHSWVFVALTLVLTAVLFSLAGLLN
                     GVFAKTFDDISLVPTFVLTPLTYLGGVFYSLTLLPPFWQGLSHLNPIVYMISGFRYGF
                     LGINDVPLATTFGVLVVFIVVFYLICWSLIQRGRGLRS"
     gene            complement(6293..7219)
                     /locus_tag="JN125_001040"
     CDS             complement(6293..7219)
                     /locus_tag="JN125_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAY8870895.1"
                     /translation="MTIALELQQLKKTYLGGVQALRGIDLQVEAGDFYALLGPNGAGK
                     STTIGIISSLVNKTSGRVSVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQ
                     AGYYGVERKEAYIRSEKYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLIL
                     DEPTAGVDIELRRSMWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENT
                     SMKALLAKLKSETFILDLAPKSPLPKLDGYQYRLVDTATLEVEVLREQGINSVFTQLS
                     EQGIQVLSMRNKANRLEELFVSLVNEKQGDRA"
     gene            7328..7990
                     /gene="can"
                     /locus_tag="JN125_001041"
     CDS             7328..7990
                     /gene="can"
                     /locus_tag="JN125_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonate dehydratase"
                     /protein_id="HAY8870896.1"
                     /translation="MKDIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPHFLWIGCSD
                     SRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLSVVQYAVDVLEVEHIIICGHYGCG
                     GVQAAVENPELGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVMEQVYNLGH
                     STIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNRETLEQRYRHGISNLKLKHAN
                     HK"
     gene            complement(8031..8567)
                     /gene="hpt"
                     /locus_tag="JN125_001042"
     CDS             complement(8031..8567)
                     /gene="hpt"
                     /locus_tag="JN125_001042"
                     /EC_number="2.4.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308156.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypoxanthine phosphoribosyltransferase"
                     /protein_id="HAY8870897.1"
                     /translation="MKHTVEVMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRG
                     SFMFMADLCREVQVSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDII
                     DSGNTLSKVREILSLREPKSLAICTLLDKPSRREVNVPVEFIGFSIPDEFVVGYGIDY
                     AQRYRHLPYIGKVILLDE"
     gene            8773..11061
                     /locus_tag="JN125_001043"
     CDS             8773..11061
                     /locus_tag="JN125_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroloquinoline quinone-dependent
                     dehydrogenase"
                     /protein_id="HAY8870898.1"
                     /translation="MAINNTGSRRLLVTLTVLFAALCGLYLLIGGGWLVAIGGSWYYP
                     IAGLVMLGVAWMLWRSKRAALWLYAALLLGTMIWGVWEVGFDFWALTPRSDILVFFGI
                     WLILPFVWRRLVIPASGAVAALVVALLISGSILTWAGFNDPQEINGTLSADATPAEAI
                     SPVADQDWPAYGRNQEGQRFSPLKQINADNVHNLKEAWVFRTGDVKQPNDPGEITNEV
                     TPIKVGDTLYLCTAHQRLFALDAASGKEKWHYDPKLKTNESFQHVTCRGVSYHEAKAE
                     TASPEVMADCPRRIILPVNDGRLIAINAENGKLCETFANKGVLNLQSNMPDTKPGLYE
                     PTSPPIITDKTIVMAGSVTDNFSTRETSGVIRGFDVNTGELLWAFDPGAKDPNAIPSD
                     EHTFTFNSPNSWAPAAYDATLDLVYLPMGVTTPDIWGGNRTPEQERYASSILALNATT
                     GKLAWSYQTVHHDLWDMDLPAQPTLADITVNGQKVPVIYAPAKTGNIFVLDRRNGELV
                     VPAPEKPVPQGAAKGDYVTPTQPFSELSFRPKKDLSGADMWGATMFDQLVCRVMFHQM
                     RYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPNREVAIANPMALPFVSKLIPRGPGN
                     PMEQPKDAKGTGTESGIQPQYGVPYGVTLNPFLSPFGLPCKQPAWGYISALDLKTNEV
                     VWKKRIGTPQDSMPMLGGPISTAGNVLFIAATADNYLRAYNMSNGEKLWQGRLPAGGQ
                     ATPMTYEVNGKQYVVISAGGHG"
     gene            complement(11168..12718)
                     /gene="cueO"
                     /locus_tag="JN125_001044"
     CDS             complement(11168..12718)
                     /gene="cueO"
                     /locus_tag="JN125_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HAY8870899.1"
                     /translation="MQRRDFLKYSVALGVASALPLWSRAVFAAERPTLPIPDLLTTDA
                     RNRIQLTIGAGQSTFGEKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHW
                     HGLEVPGEVDGGPQGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLV
                     VIEDDEILKLMLPKQWGIDDVPVIVQDKKFNADGQIDYQLDVMTAAVGWFGDTLLTNG
                     AIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELPVL
                     MGERFEVLVEVNDNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAISASGALPDTL
                     SSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGN
                     MNHMNHGGKFDFHHANKINGQAFDMNKPMFAAAKGQYERWVISGVGDMMLHPFHIHGT
                     QFRILSENGKPPAAHRAGWKDTVKVEGNVSEVLVKFNHDAPKEHAYMAHCHLLEHEDT
                     GMMLGFTV"
     gene            12884..13231
                     /locus_tag="JN125_001045"
     CDS             12884..13231
                     /locus_tag="JN125_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414664.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YacC family pilotin-like protein"
                     /protein_id="HAY8870900.1"
                     /translation="MKTFFRTVLFGSLMAVCANSYALSESEAEDMADLTAVFVFLKND
                     CGYQNLPNGQIRRALVFFAQQNQWDLSNYDTFDMKALGEDSYRDLSGIGIPVAKKCKA
                     LARDSLSLLAYVK"
     gene            13337..14203
                     /gene="speE"
                     /locus_tag="JN125_001046"
     CDS             13337..14203
                     /gene="speE"
                     /locus_tag="JN125_001046"
                     /EC_number="2.5.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyamine aminopropyltransferase"
                     /protein_id="HAY8870901.1"
                     /translation="MAEKKQWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFG
                     RVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVE
                     SITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIISDCT
                     DPIGPGESLFTSAFYEGCKRCLNPSGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGF
                     YQTAIPTYYGGIMTFAWATDNDALRHLSTEIIQARFLASGLKCRYYNPAIHTAAFALP
                     QYLQDALASQPS"
     gene            14219..15013
                     /gene="speD"
                     /locus_tag="JN125_001047"
     CDS             14219..15013
                     /gene="speD"
                     /locus_tag="JN125_001047"
                     /EC_number="4.1.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine decarboxylase"
                     /protein_id="HAY8870902.1"
                     /translation="MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYN
                     ANRLTEILSETCSIIGANILNIARQDYEPQGASVTILVSEEPVDPKLIDKTEHPGPLP
                     ETVVAHLDKSHICVHTYPESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDI
                     VTIDYRVRGFTRDINGMKHFIDHEINSIQNFMSDDMKALYDMVDVNVYQENIFHTKML
                     LKEFDLKHYMFHTKPEDLTDSERQEITAALWKEMREIYYGRNMPAV"
     gene            complement(15050..15412)
                     /locus_tag="JN125_001048"
     CDS             complement(15050..15412)
                     /locus_tag="JN125_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414661.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YacL family protein"
                     /protein_id="HAY8870903.1"
                     /translation="MDYEFLRDITGVVKVRMSMGHEVVGHWFNEEVKENLALLDEVEQ
                     AAHALKGSERSWQRAGHEYTLWMDGEEVMVRANQLEFAGDEMEEGMNYYDEESLSLCG
                     VEDFLQVVAAYRNFVQQK"
     gene            complement(15587..18184)
                     /gene="acnB"
                     /locus_tag="JN125_001049"
     CDS             complement(15587..18184)
                     /gene="acnB"
                     /locus_tag="JN125_001049"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HAY8870904.1"
                     /translation="MLEEYRKHVAERAAEGIAPKPLDANQMAALVELLKNPPAGEEEF
                     LLDLLTNRVPPGVDEAAYVKAGFLAAIAKGEAKSPLLTPEKAIELLGTMQGGYNIHPL
                     IDALDDAKLAPIAAKALSHTLLIFDNFYDVEEKAKAGNEYAKQVMQSWADAEWFLNRP
                     ALAEKLTVTVFKVTGETNTDDLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGVVG
                     PIKQIEALQQKGFPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGGGLCLGG
                     KIAPIFFNTMEDAGALPIEVDVSNLNMGDVIDVYPYKGEVRNHETGELLATFELKTDV
                     LIDEVRAGGRIPLIIGRGLTTKAREALGLPHSDVFRQAKDVAESDRGFSLAQKMVGRA
                     CGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPK
                     PVDVNTHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISF
                     PAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVE
                     KKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLNSNI
                     VLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEADADAEYAAVIDIDLADIKEPIL
                     CAPNDPDDARPLSAVQGEKIDEVFIGSCMTNIGHFRAAGKLLDAHKGQLPTRLWVAPP
                     TRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVADGATVVSTSTRNFPNRLG
                     TGANVFLASAELAAVAALIGKLPTPEEYQTYVAQVDKTAVDTYRYLNFNQLSQYTEKA
                     DGVIFQTAV"
     gene            18539..20392
                     /locus_tag="JN125_001050"
     CDS             18539..20392
                     /locus_tag="JN125_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3300 domain-containing protein"
                     /protein_id="HAY8870905.1"
                     /translation="MKMTLPFKPHVLALICSAGLCAASAGLYIKSRTVEAAVETQSTQ
                     LAVSDAAAVTLPATVSAPPVTPAVVKSAFSTAQIDQWVAPVALYPDALLSQVLMASTY
                     PANVAQAVQWSHDNPLKQGDAAIQAVSDQPWDASVKSLVAFPQLMALMGENPQWVQNL
                     GDAFLAQPQDVMDSVQRLRQLAQQTGSLKSSNEQKVITTTKKAVPVKQTVTAPVIPSN
                     TVLTASPVITEPATTVISIEPANPDVVYIPNYNPTVVYGNWANTAYPPVYLPPPAGEP
                     FIDSFVRGFGYSMGVATTYALFSSIDWDDDDHDHHHHDDDDYHHHDGGHRDGNGWQHN
                     GDNINIDVNNFNRITGEHLTDKNMAWRHNPNYRNGVPYHDQDMAKRFHQTDVNGGMSA
                     TQLPAPTRDSQRQAAASQFQQRTHAAPVITRDTQRQAAAQRFNEAEHYGSYDDFRDFS
                     RRQPLTQQQKDAARQRYQSASPEQRQAVRERMQTNPQIQQRREAARERIQPASPEQRQ
                     AVREKMQTNPQIQQRRDAARERIQSASPEQRQVFKEKVQQRPLNQQQRDNARQRVQSA
                     SPEQRQVFRERVQESRPQRLNDSNRTARLNNDQRSAVRERLSERGARRLER"
     gene            complement(20463..21887)
                     /gene="lpdA"
                     /locus_tag="JN125_001051"
     CDS             complement(20463..21887)
                     /gene="lpdA"
                     /locus_tag="JN125_001051"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HAY8870906.1"
                     /translation="MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGV
                     CLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLA
                     GMAKGRKVKVVNGLGKFTGANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDP
                     RIWDSTDALELKEVPERLLVMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDI
                     VKVFTKRISKKFNLMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPN
                     GKNLDAGKAGVEVDDRGFIRVDKQLRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEV
                     IAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPWAASGRAIASDC
                     ADGMTKLIFDKESHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE
                     SVGLAAEVFEGSITDLPNPKAKKK"
     gene            complement(22212..24104)
                     /gene="aceF"
                     /locus_tag="JN125_001052"
     CDS             complement(22212..24104)
                     /gene="aceF"
                     /locus_tag="JN125_001052"
                     /EC_number="2.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex
                     dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HAY8870907.1"
                     /translation="MAIEIKVPDIGADEVEITEILVKVGDKVEAEQSLITVEGDKASM
                     EVPSPQAGIVKEIKVSVGDKTQTGALIMIFDSADGAADAAPAQAEEKKEAAPAAAPAA
                     AAAKDVNVPDIGSDEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEI
                     KVNVGDKVSTGSLIMVFEVAGEAGAAAPAAKQEAAPAAAPAPAAGVKEVNVPDIGGDE
                     VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIM
                     IFEVEGAAPAAAPAKQEAAAPAPAAKAEAPAAAPAAKAEGKSEFAENDAYVHATPLIR
                     RLAREFGVNLAKVKGTGRKGRILREDVQAYVKEAIKRAEAAPAATGGGIPGMLPWPKV
                     DFSKFGEIEEVELGRIQKISGANLSRNWVMIPHVTHFDKTDITELEAFRKQQNEEAAK
                     RKLDVKITPVVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYINIGVAVDTPNGLVV
                     PVFKDVNKKGIIELSRELMTISKKARDGKLTAGEMQGGCFTISSIGGLGTTHFAPIVN
                     APEVAILGVSKSAMEPVWNGKEFVPRLMLPISLSFDHRVIDGADGARFITIINNTLSD
                     IRRLVM"
     gene            complement(24119..26782)
                     /gene="aceE"
                     /locus_tag="JN125_001053"
     CDS             complement(24119..26782)
                     /gene="aceE"
                     /locus_tag="JN125_001053"
                     /EC_number="1.2.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring),
                     homodimeric type"
                     /protein_id="HAY8870908.1"
                     /translation="MSERFPNDVDPIETRDWLQAIESVIREEGVERAQYLIDQLLAEA
                     RKGGVNVAAGTGISNYINTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDL
                     ELGGHMASFQSSATIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQ
                     EQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLK
                     DTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKII
                     NELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYV
                     REHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQETKGKATVILAHSI
                     KGYGMGDAAEGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSEEHT
                     YLHAQRQKLHGYLPSRQLNFTEKLELPSLQDFGALLEEQSKEISTTIAFVRALNVMLK
                     NKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQIL
                     QEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFL
                     IGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEK
                     QENVYYYITTLNENYHMPAMPEGAEEGIRKGIYKLETIEGSKGKVQLLGSGSILRHVR
                     EAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMNDAPA
                     VASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRHHFEVDASYVVVAALGE
                     LAKRGEIDKKVVADAIAKFNIDADKVNPRLA"
     gene            complement(26943..27707)
                     /gene="pdhR"
                     /locus_tag="JN125_001054"
     CDS             complement(26943..27707)
                     /gene="pdhR"
                     /locus_tag="JN125_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase complex transcriptional
                     repressor PdhR"
                     /protein_id="HAY8870909.1"
                     /translation="MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQF
                     DVSRPSLREAIQRLEAKGLLLRRQGGGTFVQSSLWQSFSDPLVELLSDHPESQYDLLE
                     TRHALEGIAAYYAALRSTDEDKERIRELHHAIELAQQSGDLDAESNAVLQYQIAVTEA
                     AHNVVLLHLLRCMEPMLAQNVRQNFELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAR
                     EASHRHLAFIEEILLDRSREESRRERSLRRLEQRKN"
     gene            28248..29621
                     /gene="aroP"
                     /locus_tag="JN125_001055"
     CDS             28248..29621
                     /gene="aroP"
                     /locus_tag="JN125_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid transporter AroP"
                     /protein_id="HAY8870910.1"
                     /translation="MMEGQQHGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSA
                     GPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVL
                     YVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIK
                     VIAVVAMIIFGGWLLFSGNSGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLE
                     LVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIF
                     HELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKRGVPV
                     NTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQG
                     VVTRFPALLYPLGNWICLLFMAAVLVIMLMTPGMAISVYLIPVWLIVLGIGYLFKEKT
                     AKAVKAH"
     gene            complement(29664..30518)
                     /gene="ampE"
                     /locus_tag="JN125_001056"
     CDS             complement(29664..30518)
                     /gene="ampE"
                     /locus_tag="JN125_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactamase regulator AmpE"
                     /protein_id="HAY8870911.1"
                     /translation="MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTL
                     GMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRND
                     SHARVTMAGELTMINGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGIWGPV
                     TLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKAL
                     PAWFASLGDFHTSQYQVLTRLAQFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIAL
                     LTIYGALV"
     gene            complement(30515..31066)
                     /gene="ampD"
                     /locus_tag="JN125_001057"
     CDS             complement(30515..31066)
                     /gene="ampD"
                     /locus_tag="JN125_001057"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,6-anhydro-N-acetylmuramyl-L-alanine amidase
                     AmpD"
                     /protein_id="HAY8870912.1"
                     /translation="MLLEQGWLVGARRVPSPHYDCRPDDETPTLLVVHNISLPPGEFG
                     GPWIDALFTGTIDPQAHPFFAEIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSQY
                     QGRERCNDFSIGIELEGTDTLAYTDAQYQQLAAVTRALIDRYPDIANNMTGHCDIAPD
                     RKTDPGPAFDWARFRALVSKETT"
     gene            31154..32047
                     /gene="nadC"
                     /locus_tag="JN125_001058"
     CDS             31154..32047
                     /gene="nadC"
                     /locus_tag="JN125_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HAY8870913.1"
                     /translation="MPPRRYNPDTRRDELLERINLDIPGAVAQALREDLGGTVDANND
                     ITAKLLPENSRSHATVITRENGVFCGKRWVEEVFIQLAGDDVTIIWHVDDGDVINANQ
                     PLFELEGPSRVLLTGERTALNFVQTLSGAASKVRHYVELLEGTNTQLLDTRKTLPGLR
                     SALKYAVLCGGGANHRLGLSDAFLIKENHIIASGSVRQAVEKASWLHPDAPVEVEVEN
                     LEELDEALKAGADIIMLDNFETEQMREAVKRTNGKALLEVSGNVTDKTLREFAETGVD
                     FISVGALTKHVQALDLSMRFR"
     gene            32250..>32432
                     /locus_tag="JN125_001059"
     CDS             32250..>32432
                     /locus_tag="JN125_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HAY8870914.1"
                     /translation="MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQ
                     TFVPYRTAVELCALEHG"
BASE COUNT         7829 a         8811 c         7986 g         7806 t
ORIGIN      
        1 gccacgctac aacaggatgg aactatacca atagaagctg gtgagtttaa agccaccagt
       61 actttccagg taacctaccc ttaataagtc caccgcaccg ccatcatctg gcggtgcggt
      121 aattgataaa tcattgcccc caccaatgtg actgataaaa tgccaggcaa cacgacatca
      181 tttatcagga cacgttatga aaccgaccac cattgcttca cttcagaaat gtaagcagga
      241 taaaaagcgt ttcgcgacca tcaccgctta cgactacagc ttcgcgaaac tatttgctga
      301 tgaaggactt aacgtcatgc tggtaggcga ctcgctgggc atgacggttc agggtcacga
      361 ctccaccctg ccggtgaccg ttgccgatat cgcctaccac actgcctccg tacgtcgtgg
      421 tgcgccaaac tgcctgctgt tggctgacct gccgtttatg gcgtatgcca cgccggaaca
      481 agcctttgaa aacgccgcaa cggttatgcg tgccggtgcc aatatggtca aaattgaggg
      541 cggtgagtgg ctggtcgaaa ccgtaaaaat gctgaccgaa cgtgccgttc ctgtatgtgg
      601 tcacttaggt ttaaccccac agtcagtgaa tattttcggt ggctacaaag ttcaggggcg
      661 cggcgatgaa gcgggcgatc aactgctcag cgatgcatta gccttagaag ccgctggggc
      721 acagctgctg gtgctggaat gcgtgccggt tgaactggca aaacgtatta ccgaagcact
      781 ggcgatcccg gttattggca ttggcgcagg caacgtcact gacgggcaga tcctcgtgat
      841 gcacgacgcc ttcggcatta ccggcggtca cattcctaaa ttcgctaaaa atttcctcgc
      901 cgaaacgggc gacatccgcg cggctgtgcg gcagtatatg gctgaagtgg agtccggcgt
      961 ttatccgggc gaagaacaca gtttccatta aggagtcacg ttgtgttaat tatcgaaacc
     1021 ctgccgctgc tgcgtcagca aattcgccgc ctgcgtatgg aaggcaagcg cgtggcgctg
     1081 gtgcctacta tgggtaatct gcacgatggc catatgaagc tggtcgacga agccaaagcc
     1141 cgcgccgatg tggtcgtcgt cagtattttc gttaacccga tgcagttcga ccgcccggaa
     1201 gatctggcac gttatccacg gaccttgcag gaggactgcg agaagctaaa caaacgtaaa
     1261 gtggatttag ttttcgcccc ttcggtaaaa gagatctacc cgaacggtac tgaaacccat
     1321 acttacgttg acgttcccgg gctttcgacc atgctggaag gcgcgagccg tccggggcat
     1381 tttcgcggcg tttcgactat cgtcagcaag ctgtttaacc tggtccagcc ggacatcgcc
     1441 tgcttcggtg aaaaggactt tcagcaactg gcgctaatcc gcaaaatggt tgccgatatg
     1501 ggcttcgata ttgaaattgt cggcgtcccg attatgcgcg ccaaagatgg ccttgcgctc
     1561 agttcccgta atggttatct gacggcggaa caacgcaaaa ttgcgcccgg tctgtacaaa
     1621 gttttaagtt caattgccga caaattgcag gctggcgagc gggatcttga tgaaattatt
     1681 gccattgcag ggcaagaact gaatgaaaaa ggcttccgcg ccgatgatat tcagattcgc
     1741 gatgccgaca cgttgctgga agtctctgaa accagcaaac gagctgtaat tctggtagcc
     1801 gcctggcttg gcgatgcccg cctgatcgac aacaaaatcg tcgaactggc gtaatgcttt
     1861 tactctaaat aattcaagtt gcaggaaggt ggcaagcgag tgacaaattc gtcaggaacg
     1921 aatttgccca gccgcaggct ggccttcggt gagagacatg gatgtctctc attaatcccc
     1981 aggagcttac ataagtaagt gactggggtt agcgaacgca gacacagcac atgcaattta
     2041 aagtatgacg agtataactg gcgctacggc tgatggcgcc aattattaat ttgccccacg
     2101 tcatggcgat ggcgtctgta agcaattatt cataacgcag acaacttagt taatcagcct
     2161 atcaatctca gcaagagata aatttgtcat ctctgcaacg tcttcccgag acatcccttt
     2221 actcagaaaa cgctgggcga attcttgcct ttcctcctgt cttccctgct gaatcccctt
     2281 ctcaatccct ttctcttcaa accactgcgc cagcgtcatc atagactccc ctcccgtttc
     2341 cctgtctctc agcacaccat aaaacaaatc cgcttgttca gtatgaccgc gttgcagcat
     2401 atagttttgc atggcaacta actgacttcc gctagtgtac ccttcgtcaa tcagcgtgac
     2461 cagttgctcc agcaataaca ttaagtcgcg ctggcgaata tgtttttgca gtagttcgag
     2521 aatcgcaatc cgccgatgtt gcatgatttc gtcatccggt gtgatggtga tatccaccag
     2581 cgggaaagga ctgttataga cgcgtcgtgc cagctccggc gagtaaaata tatcaaacca
     2641 gcacattgag agcggataag gtgtggcctc gccctgataa aacagtatcg gcaccaccag
     2701 cggcagctta tcgtgatccg cctccagatg ccggtgcatg gcagcaatag aataacgcat
     2761 catgcgaaag gccattttct tatccggctt gctttggtgt tcaatcacaa catgcagata
     2821 accgggattg ccctgcattt gcacggaata gagcacgtcc gtgctgtgtc ctttcaggct
     2881 ctcttcaatg aaactccccg actctaaatg aagcgtgttg aggtcacaaa gttctcgtaa
     2941 ttccactggc aaatgtatct ccagaaagtc gcgagccgtc tccgcgtgca ttaaaaattg
     3001 tttaaacact gcatcatgcg gtgtggtact cggtgcatcc atcttccctg ccttccgtgt
     3061 tgtcttgcgt gaaggcagta tccagtcaag gcgtgccatc gtcagccacc tctttagtat
     3121 ttaccgagca gcgttcagag aaatttcaat tggttacagc cgttacatgg cacgcttcgg
     3181 cacggtacgc aaactgctga tgtaaatgcc gtcagatgag tagacactaa acaaaaatcg
     3241 ggcaatactg cgtgagaatt tcctcaaagc aggcatcgcc tgcttcgtta acgacagggt
     3301 agaaaggtag aagttatgat tcgcacgatg ctgcagggca aactccaccg cgtgaaagtg
     3361 actcatgcgg acctgcacta tgaaggttct tgcgccattg accaggattt tcttgacgca
     3421 gccggtattc tcgaaaacga agccattgat atctggaatg tcaccaacgg caagcgtttc
     3481 tccacttatg ccatcgcggc agaacgcggt tcgagaatta tttctgttaa cggtgcggcg
     3541 gcccactgcg ccagtgtcgg cgatattgtc atcatcgcca gcttcgttac catgccagat
     3601 gaagaagctc gcacctggcg acccaacgtc gcctattttg aaggcgacaa tgaaatgaaa
     3661 cgtaccgcga aagcgattcc ggtacaggtt gcttgattgt tatccctgcg gctggttact
     3721 caccagccgc gacatcgtct ccagcgaatc cgttcttaag atataaagtc gttttagtaa
     3781 caacggatta tcccccggtt ttactttgcc tttcatggtt gtcaccgcca ggtgaaatcc
     3841 ggcatcgttt gctgccttca cggctttgtc attaaatccg ccaaacggat acgaaagata
     3901 ccagacatgc ggattaaatt gcgccagagc gcggcgtgaa cgtgcaaaat caaacagaat
     3961 attgtgttca ctacggctca gtaatatggg gcggcgataa ccatccaccc gatgcaaaaa
     4021 atgggtatgt aactggaaat caaaaacatc gcgaatttcg ttaagttcag aaacgctcat
     4081 aaattgcagc gattttgggt cccacttctg cgggtgacgt ttgatgcgcg aggtaacaat
     4141 aaacgccgtc gccttcatgc catattgttt caacacggga tacgcatagc ggctcaccga
     4201 tttgaggcca tcatcaaagg taatcaccac cgctcgcgca gggagattga tcttattctt
     4261 cacgtaacct tccagctgca ccatgctcag tgtcgcgtat cccctgtcgc gcagccaggc
     4321 catctggtta ttgaaagcgc gtactgaggt ggtcgtcgaa gtatggcgaa aacgggtgtt
     4381 ttcttcatcg cgcagaatat ggtgataggt tagcaccggc aggccattat cgggttgggc
     4441 atccagcgcg ctgatatagg ccagtcgatc gccaatacgg atctgatacc aggtttgatt
     4501 taacctgtct ttcagtttat gcaaaatcgg gtagcgcaaa ttgtccgcca gtaccccaaa
     4561 gcactcggcg cgttatagac cggcgtatct ttccaggtaa ttaagttctg attactcagc
     4621 ggcttgttga ggtcacccaa accgtcttca actttttgtc gcccctgaac tggctcgaga
     4681 tgccctttat cgataaaccc tttaccaaag ccaaaattaa atgcgtaata acttgcggca
     4741 gtgggctcca cggcaatgat ttgcccggcc cgaatattcc ccacggtcac catcttgtcg
     4801 ccaatttgcg cccagatcgc agcattttcg atggtttgca tataacgggc aggtaacgcg
     4861 gcactaacgc ttgcggtaaa cagcatcagc aggatgaata acagcttgtt tatacatgaa
     4921 aaaataaccg agggtgaaac aacgcttgta ttgtagcaaa agcgccatca gaatcgcggg
     4981 ttaatactca tacaaattat gtttgaggac aaaaggcgga tttttttgtt gttggtgcca
     5041 aagactactc acctccggcg cacccagttc gacaatacgc tcgcgaaact ctgaactggt
     5101 catggtttca cggcaagcca tcatctgttc aattaacggt aacgtgacac cagaaatcac
     5161 ttcacaacgg gagtgtttat ggcttaataa tgaagccacg cggtacggtg gcgctccggc
     5221 tatatcggtt aagaagatga caccctcacc agagtccgct tcatgcagag catcgcacat
     5281 catgcggctg agcatattag agcttaatcc gcgccagaaa ttcacggccc ggcactgaag
     5341 aagtgcccca tgttttttct ccagcgcatc cagtatctct tgcgcccggt catcgtgaca
     5401 ggtaattacc caacctaaca tcgccttcct ccttagccga aaatcagtct atcctgacca
     5461 ttgttgataa agggtgatag ccgtcaaaac tcctctcccc cgaatccaga ggagaggaaa
     5521 tagccttagc tacgcaaacc acgtccacgt tggatcagcg accaacagat caaataaaac
     5581 accacaataa agaccaccag tacgccaaag gtagtggcca gcggcacatc atttataccg
     5641 aggaagccgt agcggaaacc actgatcata taaacgattg ggttcaggtg cgacagccct
     5701 tgccagaacg gcggcaacaa agtcagggag taaaacaccc cgcccaaata cgtgagtggc
     5761 gttaacacaa aggttggcac caggctgatg tcatcgaacg ttttggcaaa cacgccgttc
     5821 agcaaacccg caagggagaa tagcaccgcc gtgagcacca gggttaaggc aacgaatacc
     5881 cacgaatgca cctgaaacgg cacaaaaaac agtgaaattg ccgtcaccag aatgccaaca
     5941 aacagaccac gcgccacgcc accgccgaca tatccggcaa taatgacgtg agtcggaacc
     6001 ggcgctacca gcagctcttc aatattacgc tggaacttgg caccaaaaaa tgatgacgcg
     6061 acgttagcgt aggcattggt gatcaccgac atcatgatca gccccggtac gatgaactgc
     6121 atatagctga agccatgcat atcgccaata cgcgaaccta tcaggttacc gaagataata
     6181 aagtaaaggg tcatggtgat gactggcggc accagcgtct gcacccagat acgcataaag
     6241 cgatggatct ctttcgccca gatgcttttt agcgccaccc agtaaagatg catcatgcgc
     6301 gatctccttg tttttcatta accagtgaaa caaacagctc ttccagacgg ttagctttgt
     6361 tacgcatact taatacctga atgccctgct cacttaactg cgtaaatacg ctgttgatcc
     6421 cctgctcacg cagcacttca acttccagcg tcgcggtatc gaccagtcga tactgatagc
     6481 catcgagctt cggtaacggg cttttcggtg cgagatcgag aataaaggtt tccgatttca
     6541 gcttcgccag cagcgccttc atcgaggtat tttccaccag ctcaccgtgt tgaataatgc
     6601 cgatattgcg gcacagcatt tctgcttctt ccaggtagtg tgtagtgaga atgatggtgg
     6661 tgcctttgtc gtttaaatcc ttcaaaaagc cccacattga gcggcgaagt tcaatatcca
     6721 cgcctgcggt cggttcgtcg agaatcagta gtttaggttc atgcattaac gcacgggcaa
     6781 tcattaaacg gcgcttcatc ccgccagata acatacgcgc acgttcgttg cgttttcccc
     6841 ataaatcgag ttgtttgaga tatttttcgc tgcggatgta cgcttctttg cgctccacgc
     6901 cgtagtaccc tgcctgattc accacaattt gctgcacggt ttcaaacggg ttgaagttaa
     6961 attcctgcgg caccagtccc aactgacgtt tagcgttcac gacatccttc tcgagatcgt
     7021 aaccaaatac gctgacccgc ccggaggttt tatttaccag agagctgata ataccgatag
     7081 tggtcgattt cccggccccg ttcggcccga gaagcgcata aaaatcaccc gcttcgacct
     7141 gcaaatctat tccacgaagc gcctgaacgc cgcctagata ggttttttta agctgttgaa
     7201 gttccagtgc aatggtcata aatttttact taccttacgt tcttacactt tatctgtggt
     7261 ttaaatcgtc ccggagttgc cctatattag ccaaacgtaa ttatttggtt acaggtcgtt
     7321 aacctccatg aaagacatag atacactcat cagcaacaat gcactatggt caaaaatgct
     7381 ggtggaagag gatcccgggt tttttgagaa actggcacaa gcgcaaaaac cgcactttct
     7441 atggattgga tgttccgaca gtcgcgttcc tgcagaacgt ttaaccggtc ttgagccggg
     7501 cgaactcttt gttcaccgta atgttgctaa cctggtcatt cacaccgacc tgaactgcct
     7561 ttccgtggtt cagtatgcag tggatgtact agaagttgaa cacattatta tctgtggcca
     7621 ctacggttgc ggcggcgtac aagccgcagt tgaaaacccg gaactggggc ttatcaacaa
     7681 ctggctgctg catatccgcg atatctggtt caaacatagc tcattgctcg gcgaaatgcc
     7741 gcaagagcgc cgtctggata ccttgtgtga actgaacgtc atggaacagg tgtataacct
     7801 aggccactcc accattatgc aatcagcgtg gaaacgcggg cagaaagtta ccattcacgg
     7861 ctgggcctat ggcattcacg acggcttgct gcgtgatctg gatgttactg ccaccaaccg
     7921 cgaaaccctt gagcaacgtt accgtcacgg gatttccaac ctcaagctga aacacgccaa
     7981 ccacaaataa aaatgccatg ccggatgcaa cacatccggc aacttcacac ttactcgtcc
     8041 agcagaatca ctttgccgat atacggcaga tgacggtaac gctgtgcgta atcaatgccg
     8101 taacccacca caaactcatc cgggatcgag aaaccgataa attctaccgg gacgttcact
     8161 tcacgacggg acggtttatc cagcagcgta caaatcgcca gcgacttcgg ttcgcgcagg
     8221 cttaagatct cacgcacttt cgacagtgta ttccccgagt cgatgatatc ttcaacaatc
     8281 agcacgtcct tgccacggat atcttcatcc agatctttga ggattttcac atcacgggtg
     8341 gtggacatgc cgctaccgta gctggaggcg gtcataaagt cgacttcatg agatacctga
     8401 acttcacggc acaggtccgc cataaacata aatgagccac gcagcagacc caccagcacc
     8461 atatcgctgc cgctgtcttt gtaacgctca gtaatctgac gacccagttc ggcgatacgc
     8521 gctttaatct ccgcttcggg gatcattact tctacagtat gtttcatatc tctaaccata
     8581 tgatttaaaa acaaatcact tcgcacgggc aggttttggc accgcaacaa agcgcaagac
     8641 acgcagtata ccagtaaaac tattcattcg cggaatctgt taataaagct cgaattgtga
     8701 tgacgatcac acatgttaaa acctataatt aattgctact aaaatattaa tgaattgaaa
     8761 tggtgtctct ttatggcaat taacaataca ggctcgcgac gattactcgt cacgctaaca
     8821 gtcctttttg cagcgctttg cgggctgtat ctactcattg gcggaggctg gctggtcgcg
     8881 attggcggct cctggtacta ccctatcgct ggccttgtga tgctcggcgt cgcctggatg
     8941 ctgtggcgca gtaaacgtgc cgcgctttgg ctatacgccg ccctgctgct cggcaccatg
     9001 atttggggcg tctgggaagt tggtttcgac ttctgggcgc tgactccgcg cagcgatatt
     9061 ctggtcttct tcggcatctg gctgatcctg ccgtttgtct ggcgtcgcct ggtcattcct
     9121 gccagcggcg cagttgccgc actggtggtg gcactgctga ttagcggtag tatcctgacc
     9181 tgggccggat ttaacgatcc gcaggaaatc aacggcacct taagcgccga tgccacacct
     9241 gcggaagcta tctcacccgt tgccgatcag gactggcctg cctatggtcg caatcaggaa
     9301 ggtcaacgct tttcacctct gaaacaaatt aacgccgata acgtccataa tctgaaagaa
     9361 gcctgggtgt tccgtactgg cgatgtgaag cagcctaacg atccgggcga aatcaccaat
     9421 gaagtgacgc cgattaaagt gggcgacacc ctttacctgt gtaccgctca ccagcgcctg
     9481 tttgcgctcg atgccgccag cggcaaagag aaatggcatt acgatcctaa gctgaaaact
     9541 aacgagtctt tccagcacgt aacctgccgt ggcgtctctt atcatgaagc caaagcagaa
     9601 acggcttcgc cggaagtgat ggcggattgc ccgcgtcgta tcattcttcc ggtcaatgat
     9661 ggtcgactga ttgcgattaa cgctgaaaac ggcaaactgt gcgaaacctt cgccaataaa
     9721 ggcgtgctca atctgcaaag caatatgcca gacaccaaac cgggtctgta tgaaccgact
     9781 tcgccaccga ttatcaccga taaaaccatc gtgatggcag gttcagttac cgataacttc
     9841 tcaacccgcg aaacgtctgg cgtgatccgt ggttttgatg tcaacaccgg ggagctgctg
     9901 tgggcttttg atcccggcgc gaaagatccg aacgcaatcc cgtctgacga acacaccttt
     9961 acctttaact cgccaaactc ctgggcacca gcggcctatg acgcgacgct ggatctggtc
    10021 tatctgccga tgggcgtgac cacgccggat atctggggcg gtaaccgcac accggaacag
    10081 gaacgttatg ccagctcgat tctggcgctg aatgccacta ccgggaaact ggcgtggagc
    10141 taccagaccg ttcaccacga cctgtgggac atggatcttc cggcacagcc gacgctggcg
    10201 gacatcaccg ttaatggtca gaaagtgccg gttatttacg ctccggcgaa aaccggcaac
    10261 atttttgtgc tcgatcgtcg caatggcgaa ctggtggttc cggccccgga aaaaccggtg
    10321 ccgcaaggtg ctgcgaaagg cgattacgtt actccgaccc agccgttctc tgaactgagc
    10381 ttccgtccga agaaagattt gagcggtgcg gatatgtggg gagccaccat gtttgaccaa
    10441 ctggtgtgcc gcgtgatgtt ccaccagatg cgctatgaag gcattttcac gccgccatct
    10501 gaacagggca cgctggtctt cccgggtaac ctgggaatgt ttgaatgggg cgggatttcc
    10561 gttgatccaa atcgtgaagt ggcaattgcc aacccaatgg cactgccgtt tgtttcgaaa
    10621 ctgatcccac gcggtccggg taacccgatg gagcagccga aagatgccaa aggcacgggt
    10681 acggaatccg gcattcagcc acagtacggt gtaccgtatg gtgtcacgct caacccgttc
    10741 ctctcaccgt ttggtctgcc gtgtaaacag ccagcatggg gttatatctc ggcgctggat
    10801 ctgaaaacca atgaagtggt gtggaagaaa cgtattggta cgccgcagga cagtatgccg
    10861 atgctgggcg ggccaatctc cacggcgggt aacgtgctgt ttatcgccgc tacggcagat
    10921 aactacctgc gcgcttacaa catgagcaac ggtgaaaaac tgtggcaggg tcgtttacca
    10981 gcgggtggtc aggcgacgcc aatgacctat gaagtgaatg gtaagcagta tgtggtgatc
    11041 tccgcaggcg gtcacggtta atttggtacg aagatgggcg actatattgt ggcttatgcc
    11101 ctgccggatg atgtgaaata accataatgc ccggagagat ccgggcatat ttccgaatac
    11161 ggtcttttta taccgtaaac cctaacatca tccccgtatc ttcatgctcc agcagatggc
    11221 agtgcgccat ataagcatgt tctttcggtg cgtcgtgatt aaacttcacc agcacttcac
    11281 tgacattgcc ttctacctta acggtatctt tccagcccgc gcgatgagcc gctggcggtt
    11341 tgccattttc tgacaagata cggaactgcg tgccgtgaat atggaacgga tgcagcatca
    11401 tgtcgcccac gccagagata acccaacgtt cgtactgccc tttcgccgcc gcaaacatcg
    11461 gcttattcat atcaaacgcc tgaccgttga ttttattggc atggtggaaa tcgaacttcc
    11521 cgccgtggtt catatgattc atattaccgt gccccatatg gcccatcatc tggctgtgat
    11581 ccattccggc catcgcctga tcgccatatt tctccattag catctgcata cccatcatat
    11641 cgagcatcgg gtccatagaa agttgcagct tgcgtaccgt cagcccttcc agcgaaggta
    11701 acgcaggcag gctacttaat gtgtctggca aagcaccgga ggcactaata gcaatcggct
    11761 gaatccgcat taccggatgc ggcttgtcaa acggcgcaat cgccatcccc atctggctga
    11821 ccggtagcgt caccaggtca aagggtttgt tgtcgttaac ctccaccagc acttcaaaac
    11881 gctcgcccat cagcaccggc agctcgctca ccttcaccgg ttcaggtagc agaccaccgt
    11941 cgctggcaat cacatacagc gggcgattgt cgctggtggc gaaattgagc gagcgggcat
    12001 tacagccatt gagcaaacgc aggcgcagcc aaccacgcgg ggcagcgtgt tgtgggtaga
    12061 ttgcaccgtt ggtcagcagc gtatcgccaa accagcccac ggcggcggtc atcacatcca
    12121 gttgataatc aatctgccca tcagcgttaa attttttatc ctgaacaatc accggaacat
    12181 catcgatacc ccactgtttt ggcagcatta atttcaggat ctcgtcatct tcaattacca
    12241 ccagcccagc caaccccatc gccacctgtc gcccagtctt gccatgttga tgtggatgga
    12301 accagcaagt agcggcaggt tgatcaacgt tcaacgtcac cgagcgcttg ccacctggcg
    12361 gaataattcc ctgcgggccg ccgtcgactt cacccggtac ttccagcccg tgccagtgca
    12421 acgtcgtctc ttccgtcagt tggttataga tatcaaccgt taccgctttg ccgcgctgta
    12481 atttcaccgc cggccccagc agattgccgt tatagcccca ggtagttgca gttttctcgc
    12541 caaaggtaga ctgacctgcg ccaatagtta actgaatgcg attacgggca tcggtcgtga
    12601 gcaaatcagg gatcggtaac gttgggcgtt ccgccgcaaa gactgcgcgg ctccacagcg
    12661 gcaaggctga agccacaccc agcgcgacgg aatattttaa gaaatcacga cgttgcatag
    12721 ttatttcctt attcttaagc aggcgaaaca aaatcaaacg ttgagcatag tccttcccct
    12781 tacgggaagg tcaagccgca gacacaattt aatcgacaat aatggtcgtc gcctcgctcg
    12841 cagtgtgcta acgtttatct tctttaagcc cctggtagaa gcaatgaaga cgtttttcag
    12901 aacagtgtta ttcggcagcc tgatggccgt ttgcgcaaac agttacgcgc tcagcgagtc
    12961 tgaagccgaa gatatggccg atttaacggc agtttttgtc tttctgaaga acgattgtgg
    13021 ttaccagaac ttacctaacg ggcaaattcg tcgcgcactg gtctttttcg cccagcaaaa
    13081 ccagtgggat ctcagtaatt acgacacctt cgacatgaaa gccctcggtg aagacagcta
    13141 ccgcgatctc agcggcattg gcattcccgt cgctaaaaag tgcaaagccc tggcccgcga
    13201 ttccttaagc ctgcttgcct acgtcaaata atccctgata cctttttgta gaaatattga
    13261 ccgtgcatcc gcggtcaatg ttagctatta tgttgcgccc tttttttacg ggtgttaaca
    13321 aaggaggtat caacccatgg ccgaaaaaaa acagtggcat gaaacgctac acgaccagtt
    13381 tgggcagtac tttgcggtag ataacgttct gtatcatgaa aagaccgatc accaagatct
    13441 gatcattttt gagaacgctg catttggtcg cgtaatggcg ctggatggcg tagtacaaac
    13501 caccgagcgc gacgagttta tctatcatga gatgatgacc catgttccgc tactggccca
    13561 cggtcacgcg aaacatgtgc tgattatcgg cggcggcgac ggtgccatgc tgcgtgaagt
    13621 aacccgacat aaaaacgttg agtcaatcac gatggtggaa atcgatgcgg gtgtcgtgtc
    13681 gttctgccgt cagtatctgc ccaaccataa cgccggtagc tacgacgatc cgcgctttaa
    13741 gctggtgatc gacgatggcg tcaatttcgt taatcaaacc agccagacct ttgatgtcat
    13801 tatctccgac tgcaccgatc ctatcggtcc cggcgaaagt ctgttcacct cagcatttta
    13861 tgaaggctgc aaacgttgcc tgaatcctag cggtatcttc gtcgcacaaa acggcgtctg
    13921 ctttttacag caggaagaag ccatcgacag ccatcgcaaa ctcagccatt acttcagcga
    13981 cgttggcttt tatcagacgg cgatcccgac ctattacggc ggtatcatga cttttgcatg
    14041 ggcgacagat aacgacgcct tacgccatct ctcaaccgaa attattcagg cgcgttttct
    14101 cgcttctggc ctgaaatgcc gttattacaa tccggcaatc catacggcag cttttgcctt
    14161 acctcagtat ctgcaagatg cactggcttc acagccgtcc taaggagaag ataagaaatt
    14221 gaaaaaactg aaactgcatg gctttaataa tctgaccaaa agtctgagtt tttgtattta
    14281 cgatatctgc tacgccaaaa ctgccgaaga gcgcgacggt tatattgctt atatcgatga
    14341 actctataat gccaaccgtc tgaccgaaat cctgtcagaa acctgttcca ttatcggggc
    14401 caatattctt aacatcgccc gccaggatta cgaaccacag ggtgccagcg tcactattct
    14461 ggtgagtgaa gaaccggttg acccgaaact catcgacaaa acagaacacc ccggcccact
    14521 gccagaaacg gtcgttgccc atctcgataa aagtcatatt tgcgtacata cctacccgga
    14581 aagccatcct gaaggtggtt tatgtacctt ccgcgccgat attgaagtct ctacctgcgg
    14641 cgtgatttct ccgctgaagg cgctgaatta cctgatccac cagcttgagt ccgatatcgt
    14701 aaccattgat tatcgcgtgc gcggttttac ccgcgacatt aacggtatga agcactttat
    14761 cgaccatgag attaattcga ttcagaactt tatgtctgac gatatgaagg cgctgtatga
    14821 catggtggat gtaaacgtct atcaggaaaa tatcttccat accaagatgt tgcttaaaga
    14881 gttcgacctt aagcactaca tgttccacac caaaccggaa gatttaaccg acagcgagcg
    14941 ccaggaaatt accgctgcgc tgtggaaaga aatgcgcgag atttattacg ggcgcaatat
    15001 gccagctgtt taacggctct ggcggagctc caggctccgc cagatttatt tacttctgct
    15061 gcacgaaatt gcggtaagcc gccacgacct gcagaaaatc ctcaacgccg catagcgaca
    15121 ggctttcttc gtcgtagtag ttcatcccct cttccatttc atcgccagcg aattccagtt
    15181 gattggcgcg aaccatcacc tcttcaccgt ccatccacag ggtgtattca tgccctgccc
    15241 gttgccagga ccgttcgcta cctttcagtg cgtgcgctgc ttgttccact tcatcaagca
    15301 aggccaggtt ttctttcacc tcttcattaa accagtgccc gaccacttca tgccccatgg
    15361 acatacgcac ctttaccact ccggtaatat cgcgcagaaa ttcgtaatcc atagtgtgtt
    15421 cctctgctcc cggcaatgcg ccgaaatcgc attgcgccat tgatgtaatt atcgcagcct
    15481 taccggagaa aaacagcgga acggcgatgg tttagaaata aaaaatgccc gggaatctca
    15541 ttcaccgggc attgtgtcgt ttatgcgcag cgcgtgcgct tacttattac accgcagtct
    15601 ggaaaatcac cccatcggct ttttcggtgt actgagaaag ttggttgaag ttcagataac
    15661 gataagtatc aacggcagtt ttatctactt gcgcaacgta ggtctggtac tcttccggcg
    15721 tcggcagttt gccaatcagc gccgcaacag ccgccagttc tgcagaagcc aggaagacat
    15781 tcgcgccagt ccccagacgg ttcgggaagt tacgggtaga ggtggaaacc accgtcgcac
    15841 cgtctgctac acgcgcctgg ttacccatac acagagaaca gcccgggatc tcgatacgag
    15901 ccccgctctt accgaagacg ctgtagtagc cttcttcagt caactgtgcg gcgtccatac
    15961 gggttggcgg tgccacccac aggcgggtcg gcaactggcc tttatgcgca tccagcagtt
    16021 tacccgcagc acggaagtga ccgatgttag tcatgcaaga accgataaat acttcgtcga
    16081 tcttctcgcc ctgtaccgca gacagcggac gcgcgtcatc cgggtcgttc ggagcacaca
    16141 ggattggctc tttaatatcc gccagatcga tgtcaatcac tgccgcgtat tccgcatctg
    16201 catcggcttc cagcagctca ggattcgcca gccatttttc catgccctga atacgacgtt
    16261 ccagggtacg acgatcgccg taaccttccg cgatcatcca cttcagcagg acgatattag
    16321 agttaaggta ttcgatgatt ggttctttgt tcagcttgat agtacaacca gcggcagaac
    16381 gctcagcgga cgcatcggta agctcaaagg cctgctcaac tttcagatcc ggcagacctt
    16441 caatttccag aatgcggcca gagaagatgt ttttcttgcc tttcttctca acggtcagca
    16501 gaccttgttt gatggcatac agcggaatgg cgtgtaccag atcgcgcagg gtgatgcccg
    16561 gctgcatttt gcctttgaag cgcaccagaa cggattccgg catatccagc ggcattacgc
    16621 ctgttgcggc tgcaaatgcc accagaccag aacccgccgg gaaagagata ccgatcggga
    16681 aacgggtatg ggagtcacct ccggtaccga cggtatccgg cagcagcata cggttcagcc
    16741 aggagtggat tacgccgtca cccggacgca gcgacacacc gccacggttc ataatgaagt
    16801 ccggcagcgt gtggtgcgtg ttcacgtcaa ctggcttcgg atacgccgcg gtgtggcaga
    16861 aagactgcat caccaggtca gccgagaagc ccaggcacgc caggtctttc agttcatcac
    16921 gggtcatcgg gccggtagtg tcctgtgaac ctacagaagt cattttcggt tcgcagtacg
    16981 cgcccggacg aatgcctttc acgccacagg cacggcctac cattttctgc gccagcgaga
    17041 agccgcgatc gctctcagcg acatctttcg cctgacggaa cacatcactg tgcggcagac
    17101 caagtgcttc acgcgctttg gtggtcaggc cacgcccgat aatcagcggg atacggccgc
    17161 cagcacgcac ttcatcaatc agcacgtcgg ttttcagttc gaaggtcgcc agcagttcgc
    17221 ctgtttcgtg gttacgcact tcacctttgt acgggtaaac gtcaatcacg tcgcccatgt
    17281 tcaggttaga gacgtcgact tcgattggca gtgcacccgc gtcttccatc gtgttaaaga
    17341 agatgggtgc aattttaccg ccgaggcaca aaccaccgcc gcgtttgttc ggcacatgtg
    17401 gaatatcatc gcccataaac cacagaacgg agttcgtggc ggatttacgc gatgaacccg
    17461 tacccacaac gtcaccgacg tacgccagcg ggaaaccttt ctgttgcaga gcttcaatct
    17521 gtttgatcgg gccaacaaca cctggctggt ctggctcaat accttcacgg gcgtttttca
    17581 gcatcgccag cgcgtgcagt gggatatccg ggcgcgacca cgcatccggt gccggagaaa
    17641 ggtcatcggt gttggtttcg ccagtgactt tgaagacggt aacggtcagt ttttcagcca
    17701 gcgccgggcg attcagaaac cattcggcat ccgcccagga ctgcattacc tgcttcgcat
    17761 attcgttgcc tgctttcgct ttctcttcta cgtcatagaa gttatcgaat atcagcagtg
    17821 tgtgagaaag tgctttggca gcgatcggtg ccagtttggc atcatccagc gcgtcgatca
    17881 gcggatgaat gttgtaacca ccctgcatgg tgcccagcag ttcgatggct ttttccggag
    17941 tcagcagagg ggatttggct tcgcctttcg cgatagcagc caggaagcct gctttgacat
    18001 aggcggcttc atcgacgcca gggggaacac ggttggttaa cagatctaac aggaattctt
    18061 cttcgcccgc gggcgggttt ttcagcagct ctacaagtgc ggccatttgg tttgcatcca
    18121 ggggtttggg cgcaatcccc tcagcggcac gctcagctac gtgcttacgg tattcttcta
    18181 gcacgacggt tctcctcgct ctcattgtca tagtgcggca ggcgattctc ttcacgctcc
    18241 tgtgagacag cagtttgtag ggtaaatgcc cagtaccgca acgggcagaa tagcaggatt
    18301 ttgacgacgt gttaatctgt ttacaaaaaa gcaacataaa aaagtggctg aatcgttaag
    18361 gatggtctag agattgtttc cctacgtaaa aacttcgtta attcgcatgg tgataatcac
    18421 ctttctcaac gaatcccaag attagtcaaa atttaaacta ccgcctcttt atactcggat
    18481 taacagcacc tgcgggtggc agttcgccga ccattgcgat ttccttgaga tccgaattat
    18541 gaaaatgact ttgccgttta aaccccatgt gctggcacta atttgcagtg ccgggctttg
    18601 tgccgcctct gccgggctat atataaaaag ccgcacagtg gaagcggctg tggaaacgca
    18661 atcgacacaa ctggctgtgt ctgacgctgc cgcggttacg cttcctgcaa cggtttccgc
    18721 gcctcccgta acacccgccg tcgttaaatc cgcattcagc actgcacaaa tagatcaatg
    18781 ggtcgcgccc gtcgcgctgt atcccgacgc cctactttcg caggtgctga tggcatcaac
    18841 ctatccggca aacgttgctc aagcagtgca atggtcgcac gataatccac ttaaacaagg
    18901 cgatgctgct attcaggcgg tatctgacca gccgtgggac gccagcgtta aatcactggt
    18961 ggcctttcca caattgatgg cattgatggg cgaaaacccg caatgggtgc aaaacctggg
    19021 cgatgctttt ctggcgcagc cgcaggacgt gatggactcg gtacagcgat tgcggcaact
    19081 ggcgcaacaa accggttcgc tgaagtcatc aaacgaacaa aaagttatta ccacaacgaa
    19141 gaaagctgta ccggtaaaac agacagtcac ggcacccgtc ataccatcca ataccgtttt
    19201 aactgccagc cccgtcatta cagagcctgc aacaaccgtc atttccattg agcccgccaa
    19261 tcctgatgtg gtctatattc ccaactacaa cccaaccgtg gtttacggga actgggccaa
    19321 tactgcgtat ccgccggttt atctgccacc accagccgga gaaccgttta ttgacagctt
    19381 tgtgcgcgga ttcggctata gcatgggtgt tgctaccacg tacgcactat tcagcagcat
    19441 cgactgggat gacgacgatc atgaccatca tcatcatgac gatgatgatt atcatcacca
    19501 cgatggcggt catcgtgacg gtaatggctg gcaacacaac ggcgacaaca tcaatatcga
    19561 cgtcaacaat ttcaaccgta tcaccggtga gcatcttact gataagaata tggcatggcg
    19621 gcacaatcca aactaccgta atggtgtgcc ctatcatgat caggatatgg caaagcggtt
    19681 tcatcaaacc gatgtcaacg gcggaatgag tgccacgcag ctacctgctc caacacgcga
    19741 cagccagcgt caggcggcag caagtcagtt tcagcaacga acacacgccg cccccgtcat
    19801 tacacgagat acccaacgtc aggcagcggc acagcggttt aatgaagctg aacactatgg
    19861 gagctatgac gacttccgcg acttcagccg tcgccaaccc ctgacccagc aacaaaagga
    19921 cgccgctcgt cagcgttatc agtcagcttc tcctgagcag cgccaggcag ttcgcgagag
    19981 aatgcagact aacccgcaga tccagcagcg aagagaggca gcgcgtgagc gcattcagcc
    20041 cgcctcgcct gagcagcgcc aggcagtccg cgagaaaatg cagactaacc cacagatcca
    20101 gcagcgaaga gacgcagcgc gtgagcgtat tcagtcagcc tcgcctgagc agcgccaggt
    20161 gtttaaggaa aaagtacagc agcgcccact gaaccaacag caacgtgata acgcccgcca
    20221 gcgtgttcaa tcagcatcac ctgaacaacg tcaggttttt cgggagagag ttcaggagag
    20281 ccgcccacaa cgtctaaacg acagtaaccg tactgccaga ttgaataacg atcaacggtc
    20341 agcagtacgc gaacgtctct ctgagcgcgg agcaaggcga ctggaaaggt aaattacaga
    20401 cgtaaaaaaa gcggcgtggt tagccgcttt tttaattgcc ggatgttccg gcaaacgaaa
    20461 aattacttct tcttcgcttt cgggttcggc aggtcggtaa tgctaccttc gaacacttct
    20521 gccgccaggc ccacagactc gtgcagagtc gggtgcgcat ggatggtcag cgcgatgtct
    20581 tcagcgtcac aacccatttc gattgccaag ccgatttcac ccagcagctc gccgccgttg
    20641 gtaccgacaa tcgcaccacc gatcacacgg tgagattctt tgtcgaaaat cagcttggtc
    20701 ataccgtctg cgcagtcgga agcgatagca cgaccagaag cagcccacgg gaaggtggcg
    20761 gtttcatagc tgatgccttt ctctttcgct tctttctcag tcagacctac ccatgcaact
    20821 tctggttcgg tataggcgat agacgggata actttcggat cgaagtagtg ttttttaccg
    20881 gcgataactt cagcggcaac gtgaccttcg tgaacacctt tgtgtgccag catcggctga
    20941 ccaacgatat cgccgatagc aaagatgtgc ggtacgttgg tacgcagctg tttgtcaacg
    21001 cggatgaaac cacggtcgtc cacttccacg ccagctttgc ctgcgtcgag gtttttaccg
    21061 ttcggcacac gaccaattgc taccagcacg gcgtcgtaac gctgcggttc agcgggtgct
    21121 tttttgcctt ccatcgtcac ataaataccg tcttctttcg cttcaacggc ggtaactttg
    21181 gtttccaaca tcaggttgaa tttcttgctg atacgcttgg tgaagacttt aacgatgtct
    21241 ttgtcagctg ccgggataac ctggtcgaac atttcaacca cgtcaatctg tgaacccagc
    21301 gcgtggtata cggtgcccat ttccagaccg atgataccgc cacccattac cagcaggcgt
    21361 tctggtactt ctttcagttc cagcgcgtca gtggagtccc agatacgcgg atcttcatgc
    21421 ggaataaacg gcagttggat cgggcgagaa cccgctgcaa tgatcgcgtt gtcgaagttg
    21481 atcacggttt taccgttctc accttcaact tccagggtgt tagccccggt aaatttaccc
    21541 agaccgttga ccactttgac tttgcggcct ttcgccatac cagccagacc accggtcagc
    21601 tgattgatca ctttctcttt ccaggtacga atcttgtcaa tatcggtttt cggttcgccg
    21661 aagacgatac cgtgttcagc cagcgctttg gcttcttcga taacttttgc tacgtgcagc
    21721 agtgctttag aagggataca gccgacgttc aggcaaacac cgccaagggt gttgtaacgt
    21781 tctacgatta cggtttccag acctaaatca gcgcaacgga aggcagcgga gtaacctgcg
    21841 gggcctgccc caagtaccac gacctgagtt ttgatttcag tactcatcat gacctctata
    21901 tatttatctc cggcggtcat acccgtcgtc tttcaggccg cagcggcgtt agcttcacgc
    21961 cctcacccca gtcacttact tatgtaagcc cctggggatt ctggcgcttg ctaccttgct
    22021 gcacccagaa atccataggg tatgtgaagt aataccctaa ccaccaccgg gtcgttctat
    22081 ccgtcggtat tttataaaat tgttaacaat ttttaaacaa caaacggcaa ccgatttgtc
    22141 tattcgctaa taacctcaat acattcatga gattaccaga aaaaagccgg ccgttgggcc
    22201 ggctctttta cttacatcac cagacggcga atgtcagaca gcgtgttgtt aatgatggta
    22261 atgaaacggg caccatcagc accgtcgatc acgcggtggt cgaaggagag agaaatcggc
    22321 agcatcagac gcggcacgaa ctctttacca ttccacaccg gctccatcgc ggacttggaa
    22381 acgccgagga tagccacttc cggcgcgttc acaatcggcg cgaagtgggt agtacccagg
    22441 ccgccgatgc tggagatggt gaagcaaccg ccctgcattt cgcccgcagt cagcttaccg
    22501 tcacgcgctt tcttagaaat agtcatcagc tcgcgagaca gctcgatgat gcctttcttg
    22561 ttgacgtctt tgaataccgg aacaaccaga ccgttcgggg tatccaccgc cacaccgatg
    22621 ttgatgtatt tcttcagggt cagacgctga ccgtcttccg acagcgaact attgaagcga
    22681 ggcatctgct caagagctgc agcaacggct ttcatgatga agacaaccgg ggtgatcttc
    22741 acatccagct tacgtttcgc cgcttcttcg ttctgctgtt tacggaacgc ttccagctcg
    22801 gtgatatcgg ttttgtcgaa gtgggtaaca tgcgggatca tcacccagtt acggctcagg
    22861 ttagcaccag aaattttctg gatacggccc agttccactt cttcgatttc accaaacttg
    22921 ctgaagtcca ccttcggcca cggcagcatg cctgggatac cgccgccagt cgccgccgga
    22981 gctgcttctg cacgtttgat agcttctttc acgtaagcct gaacgtcttc gcgcaggata
    23041 cgacctttac ggccagtgcc cttcactttc gctaggttaa caccaaactc gcgtgccaga
    23101 cggcggatca gcggagtcgc gtgaacataa gcgtcgtttt cagcaaattc agatttgcct
    23161 tccgctttcg cagctggtgc tgctgccggg gcttcagctt ttgctgccgg tgccggcgct
    23221 gccgcttcct gtttcgcagg agctgccgca ggcgctgcgc cttcaacttc gaagatcata
    23281 atcagcgagc cagttttcac tttatcgcca acgttgactt tcagttcctt cacgacgcct
    23341 gcaaacggcg ccggaacttc catagaagct ttgtcgcctt ctacggtgat cagtgactgt
    23401 tcagcggcaa ctttgtcgcc cactttcacc atcacttcag tcacttcaac ttcgtcaccg
    23461 ccgatatccg gaacgttaac ttctttcacg ccagctgctg gtgcaggggc cgctgccgga
    23521 gccgcttcct gtttagccgc cggagctgcc gcgcctgctt cacccgcgac ttcgaagacc
    23581 ataatcagcg agccggtaga cactttgtca cccacgttca ctttgatctc tttcacggtg
    23641 ccagcaaacg gagccggaac ttccatagaa gctttatcgc cttctacggt gatcagcgac
    23701 tgttcagctt caactttatc gccaactttc accaggattt cggtcacttc aacttcgtcg
    23761 ctgccgatat ccggaacgtt aacgtctttt gccgccgcag ccgcgggtgc tgctgccgga
    23821 gctgcttctt tcttctcttc tgcctgagca ggtgcagcgt ctgctgcacc gtcggcggaa
    23881 tcgaaaatca taatcagtgc gccggtctgg gttttatcgc caacagagac tttgatctct
    23941 ttaacgatac ccgcctgcgg agacggaact tccatagagg ctttgtcgcc ttctacggtg
    24001 atcagcgact gttcggcttc aactttgtcg cccactttga ccaggatctc ggtgatttca
    24061 acttcatcag ccccgatgtc cggtactttg atttcgatag ccattattct tttacctctt
    24121 acgccagacg cgggttaact ttatctgcat cgatgttgaa tttggcgatt gcgtcagcaa
    24181 ccactttctt atcgatttcg ccacgtttag ccagttcgcc cagcgccgca accacgacat
    24241 aagaagcatc aacttcgaag tggtgacgca ggttctcacg gctgtcggaa cgaccgaagc
    24301 catcagtacc cagtacgcgg tagtcgtcag ccggtacgta agtacggacc tgctcagcga
    24361 acagtttcat atagtcggta gatgccactg ccggagcgtc gttcatcacc tgagcgatat
    24421 acggaacgcg cggagtttcc agcggatgaa gcatgttcca gcgttcacaa tcctgaccat
    24481 cacgcgccag ctcggtgaag gaggtcacgc tataaacgtc agaacctacg ccgtaatctt
    24541 tcgccaggat ctctgccgct tcacggacgt gacgcaggat agaaccggag cccagcagct
    24601 gaactttacc tttgctacct tcaatggttt cgagtttgta gataccttta cggatacctt
    24661 cctcagcacc ttccggcatt gccggcatgt ggtagttttc gttcagcgtg gtgatgtagt
    24721 agtaaacgtt ctcttgtttt tcaccgtaca tacgctccag accgtcatgc ataatgacag
    24781 caacttcgta agcgtaagcc gggtcgtaag agatacagtt cggaatagtc agcgactgaa
    24841 tgtggctgtg accatcttca tgctgcagac cttctccgtt cagggtggta cgaccggaag
    24901 taccgccgat caggaagcca cgcgcttgct ggtcgccagc cgcccagcac agatcgccaa
    24961 tacgctggaa gccgaacatc gagtaataga tgtagaacgg gatcatcggc agattgttgg
    25021 tgctgtaaga ggtcgccgct gccagccagg aacaacctgc gcccagctcg ttgatccctt
    25081 cctgcagaat ctgacctttc tcgtcttctt tatagtaagc aacctgctcg cggtcctgcg
    25141 gggtgtactg ctgaccgttc gggctgtaaa taccaatctg acggaacaga ccttccatac
    25201 cgaaagtacg cgcttcgtcg gcgatgatcg gtaccagacg atctttgatc gacttgttct
    25261 tcagcattac gttcagggca cgaacgaaag cgatagtggt agagatctct ttgctctgct
    25321 cttccagcag cgcgccgaag tcttgcaggc tcggcagctc aagcttctcg gtgaagttca
    25381 gctgacggct tggcagataa ccgtgcagtt tctgacgctg tgcgtgcaga taggtatgct
    25441 cttcagaacc ttccgggaag gtgatgtacg gcagtttttc gatatctgca tcagacaccg
    25501 gcacattgaa acggtcgcgg atgtgacgca cgccgtccat gttcattttc ttaacctggt
    25561 gcgcgatgtt tttaccttca gccgcgtcgc ccatgccgta acctttaatg gaatgagcaa
    25621 ggattactgt cgctttgcct ttggtttcct gcgctttctt gaatgcagcg tagattttct
    25681 tcggatcgtg accaccacgg ttcagtgccc agatctgctc gtcagtccag tctgcaacca
    25741 gtgctgcggt ttcaggatat ttaccgaaga agtgttcacg aacgtacgca ccatctttcg
    25801 atttgaaggt ctggtagtcg ccgtcaacgg tttcgttcat cagctggatc agtttaccgc
    25861 tggtatcttt acgcagcagt tcatcccaac ggctacccca catcactttg atcacgttcc
    25921 agccagcacc ttcgaagatg ccttccagtt cgttgatgat cttgccgtta ccggtgaccg
    25981 ggccgtcaag acgctgcagg ttacagttga taacgaagac caggttatcc agtttttcac
    26041 gggtagcgat ggtgatcgca cctttggatt ccggttcgtc catttcaccg tcgccgagga
    26101 acgcgtaaac ggtctgttta gaggtatctt tcaggccacg gtgttccaga tatttcagga
    26161 atttagcctg gtaaatagca ccaatcggcc ccagccccat agatacggtc gggaactgcc
    26221 agaattccgg catcagtttc gggtgcggat aggaagagag gccattgccg tgaacttcct
    26281 gacggaagtt atccagctgc tcctgagtca gacgaccttc caggaaagca cgagcgtaca
    26341 cgcccgggga gatgtggccc tggaagtaaa ccaggtcgcc gccatcctgc tcgttgcgtg
    26401 cacggaagaa gtggttaaag cacacatcat aaatggttgc ggaagactgg aaggacgcca
    26461 tatggccgcc cagttcgagg tcttttttcg acgcacgcag caccgtcatg atggcgttcc
    26521 agcggatagc tgaacgaata cggcgttcca gttccagatt acccggatac tccggttgtt
    26581 cttcaacggg gatggtgttg atgtagttgc tgatacctgt gcctgcggct acgtttacac
    26641 cgcctttgcg ggcttcagca agcagttggt cgatcagata ctgagcacgc tcaacacctt
    26701 cttcacggat gaccgattcg atcgcctgga gccagtcgcg agtttcgatc ggatccacgt
    26761 catttgggaa acgttctgac atgggttatt ccttatctat ctaataacgt tgagttttct
    26821 ggaacctgtc ccattgaact ctcgccggaa agctcaataa gacaggttct acgtttagtt
    26881 gccgcgcttt tatatgcgct tgatttacaa catcttctgg ataattttta ccagaaaaat
    26941 cactaattct ttcgttgctc cagacgacgc agagaacgct cacggcggct ctcttcacga
    27001 cttctgtcga gcaaaatttc ttcgataaag gccagatggc gatgcgatgc ttcgcgcgct
    27061 tcttccggct taccggccat aatcgcttca aatatgcggg tgcggtgact actcaccagc
    27121 ggcagcatct cgcgacgcga atagagcaat tcgaagttct ggcggacatt ctgggccaac
    27181 atcggctcca tacaccttag cagatgaagc agaaccacat tgtgggccgc ttcagtgaca
    27241 gcaatctgat actggagtac ggcgtttgat tccgcgtcca gatcgccaga ctgctgcgcc
    27301 agttctatgg cgtgatggag ttcacggatg cgttccttgt cttcatcggt actacgcagc
    27361 gcggcgtaat aagcggcgat accttccagg gcgtgtcgtg tttcgagcaa gtcatactgt
    27421 gactcaggat ggtcggagag cagctccacc agcggatcgc tgaagctttg ccataggctg
    27481 ctctggacaa aagtgccgcc accctggcga cgaagcaaca agcccttcgc ttcgagacgt
    27541 tgaatcgcct cacgcaagga gggacgggag acgtcaaact gttttgccag ttcgcgttcc
    27601 ggtgggagtt tttcgcccgg gcggagagtg ccttcgagga tcaaaaactc cagttgctgc
    27661 tcaatcacat cggagagttt tggttggcgg attttgctgt aggccatgag ttcctgtctt
    27721 aagccacttg ccgaagtcaa ttggtcttac caatttcatg tctgtgacgc taaagtaaca
    27781 aagtattcac cttatgtcca tacaggtttt gattgaaatc atgaaactgt gcacatttta
    27841 acaacttgac atatataacg tttcaaagtt gtaaccatgc acaaatgtag actttacgta
    27901 ggaaagggat tttttaacga ttattaaact ataaaaatcc gaattgaacc gattcactta
    27961 ccaattttgt gatttttaat tcaattaaaa cgaatttaaa ttcattctac atattgagag
    28021 gggttgaggc tgagctttac aaacggtttc tttttaagca actcatcttc aaccatgcat
    28081 aaagcgggtg cattcgctgc cgcataccat tattcttgat ctgacggaag tctttttgta
    28141 acaattcaaa cttctttaat gtaaacaaat taatacaaca aacggaattg caaacttaca
    28201 cacgcatcac tgcgtagatc aaaaaaacaa ccaccgcacg aggtttcatg atggaaggtc
    28261 aacagcacgg cgagcagcta aagcgcggcc ttaaaaaccg ccatattcag cttatcgcgc
    28321 tgggtggcgc gatagggacc gggttattcc tgggtagcgc ctccgtaata cagtccgcag
    28381 ggccagggat tatcctgggt tacgccattg ctggttttat cgcctttctg atcatgcgtc
    28441 agctgggtga aatggtggtc gaagaacctg tcgcaggctc ctttagccac tttgcttata
    28501 aatactgggg cagttttgcc ggtttcgcct ctggctggaa ctactgggta ctgtacgttt
    28561 tagttgccat ggctgagctg actgccgtgg gtaaatacat tcagttctgg tatccggaaa
    28621 tccccacctg ggtttctgcc gccgtattct ttgtggtgat taacgccatc aacctgacca
    28681 acgttaaagt gtttggcgag atggagttct ggtttgccat tatcaaagtt atcgcggtgg
    28741 tagcgatgat catcttcggc ggctggctgc tattcagtgg caacagcggc ccgcaggcga
    28801 ccgttagcaa cctgtgggat cagggtggtt tcctgccgca cggcttcacc gggctggtga
    28861 tgatgatggc gattatcatg ttctcgttcg gtggtctgga actggtgggg atcaccgcag
    28921 cagaagctga taacccggag caaagtatac cgaaagcaac taaccaggtt atctaccgca
    28981 tcctgatttt ctatattggt tcgttagccg ttctgctctc actgatgccg tggacccgcg
    29041 ttaccgccga taccagtccg tttgtgctga tcttccacga gttaggcgat acctttgtgg
    29101 cgaatgcgct gaacatcgtg gtactgactg cggcgctctc cgtgtacaac agctgcgtat
    29161 attgcaacag ccgtatgctg tttggtctgg cacaacaggg taatgcgcca aaagcgctgg
    29221 cgtctgtcga taaacgtggt gtaccagtaa ataccattct ggtgtctgca ctggtaacgg
    29281 cgttgtgcgt actgattaac taccttgccc cagagtccgc tttcggactg ttaatggcgc
    29341 tggtggtatc tgcactggta atcaactggg cgatgattag cctggcgcat atgaaattcc
    29401 gtcgcgccaa gcaggaacaa ggcgtggtaa ctcgcttccc tgctctgctt tatccgctgg
    29461 gtaactggat ctgcctgctg tttatggcgg cggtactggt gattatgctg atgaccccag
    29521 gaatggcgat ttcggtatac ctgatcccgg tatggctgat cgtgttaggt atcggctatc
    29581 tgtttaaaga gaaaaccgcc aaagccgtaa aagcgcatta atctctctac gccctcaccc
    29641 gtacagggtg agggcaataa tctttacacc aacgccccgt aaatcgtcag tagtgcaatc
    29701 accaccacga ccacgaacga ggttttcttc gccattgaaa ccgctgcctt cggcgtctcc
    29761 accttatcga catgcggttc acgcgccaga gagaactgcg ccagacgcgt taacacctga
    29821 tactgcgaag tatggaagtc acccagcgaa gcaaaccagg ccggtaacgc tttctcccca
    29881 tgaccgatca aggcatatac cacacccgca agacgaaccg gcacccaatc cagtacatga
    29941 agcacggcat caatgccgga ctgtaaacga tgatgcggcg tctggtatcg cgccagccag
    30001 tattgccatg cacgcaaaaa cgcatacccc atcagcgtaa cgggtcccca gattcccccc
    30061 acaatcaacc agaacagcgg agcaagataa aaacgaaagt taatccacag caatgcattt
    30121 tgcagctcac gcaaatactc acgttcatcg cagcctgccg ggacgccgtt aatcatggtg
    30181 agttcgccag ccatcgtgac acgggcatgg ctatcattac gtgaagcagc tgtcagataa
    30241 gcatgataat gaagacgaac tttacctgcg ccaatacaca gcaaaccaat cagcagccac
    30301 accagcagcg tgggaacgtt gaacaatact ccctgcaatg cgcgtaacag taaaaaagtc
    30361 acgcccatcg caataatggt catgcctaac gtgcgcccga gagaaaaatg tttcacccgc
    30421 cgaaagaacg cttcaagacg atgatcaagc tgccagtgct cgcccaactt aaacaggcgc
    30481 tcgaaaatta acaccagtaa ggttgtaaat agcgtcatgt tgtctccttg ctgaccagcg
    30541 cacgaaaccg cgcccaatca aatgcagggc cgggatcggt tttccgatcc ggcgcaatat
    30601 cacaatggcc cgtcatgtta ttagcgatat ctggatagcg atcaatcagt gcccgcgtaa
    30661 ccgccgcaag ctgttgatac tgcgcatcgg tatacgccag cgtatcggtg ccttcaagct
    30721 caatcccaat agaaaaatca ttgcagcgtt cgcgcccctg atactgagag actcccgcat
    30781 gccatgcacg tttatcgaaa ggaacatact ggactatttc accatcacgg cgaatcaaac
    30841 agtgagcgga gacgcgcaaa tgggcgatct cagcaaagaa aggatgtgcc tgcggatcaa
    30901 tagttccagt gaataatgcg tcgatccacg gaccgccaaa ctcgcctggc ggcaggctaa
    30961 tattgtgcac caccagcagg gtgggtgttt cgtcatccgg gcggcaatcg taatgtggtg
    31021 agggaacgcg gcgcgcgcca accagccacc cctgttctaa caacatgcag gatctcctta
    31081 tatgtggtgc taatacccgg ttcagagtag catgtttcta ctttatgatt cgttagctat
    31141 ctggagtttt aacatgccgc ctcgccgcta taaccctgac acccgacgtg acgagctgct
    31201 ggaacgcatt aatctcgata tccccggcgc ggtggcccag gcgctgcggg aagatttagg
    31261 cggaacagtc gatgccaaca atgacattac ggcaaaactt ttaccggaaa actctcgctc
    31321 tcatgccacg gtgatcaccc gcgagaatgg cgtattttgc ggcaaacgct gggttgaaga
    31381 ggtgtttatt caactggcag gcgacgatgt caccataatc tggcatgtgg atgacggcga
    31441 tgtcatcaac gccaatcaac ccttgttcga acttgaaggc ccatcccgcg tgctgttaac
    31501 gggcgaacgc actgcgctta attttgtgca aaccctttca ggagctgcca gtaaggtacg
    31561 ccactatgtc gaattactgg aaggcaccaa cacgcagttg ttggatacgc gcaaaacctt
    31621 acctggcctg cgttcagctc tgaaatacgc ggtactttgc ggcggcggag cgaatcaccg
    31681 tctggggctt tctgatgcct tcctgatcaa agaaaatcat attattgcct ccggctcagt
    31741 gcgccaggcc gtcgaaaaag cgtcctggct gcacccggat gcgccagtag aagtcgaagt
    31801 agagaatctg gaagaacttg atgaagccct gaaagcagga gccgatatca tcatgctgga
    31861 taacttcgaa acagaacaga tgcgcgaagc cgtcaaacgc accaacggca aggcgctact
    31921 ggaagtgtct ggcaacgtca ctgacaaaac actgcgcgaa tttgccgaaa cgggcgtgga
    31981 ctttatctcc gtcggtgcgc taactaaaca cgtacaagca ctcgaccttt caatgcgttt
    32041 tcgctaattg ctgacagatt tatccgctcc atcgcgggcg gataatctcc ccttccccaa
    32101 ctttcttcgt aacgcctcgc aaatttcttg tctttcgctg caacgaaata aaaaacctcg
    32161 gaagctgctt tcccgtttcg ttttttgccc ctcgcttgtg ctgatggcgt ttgccaaagt
    32221 agcgccaacc aaatcaagga gcgaaacaga tggacaagca acgcggtttt acacttatcg
    32281 aactgatggt ggttattggc atcattgcca ttttaagcgc cattggtatt cccgcttatc
    32341 aaaactacct gcgcaaagct gcactcaccg acatgctaca aacctttgtg ccttaccgta
    32401 ccgccgtaga gttgtgcgcg ctggaacatg gt
//
LOCUS       DADMHM010000027        30079 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.028, whole genome shotgun sequence.
ACCESSION   DADMHM010000027 DADMHM010000000
VERSION     DADMHM010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 30079)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30079)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30079
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.028"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..255
                     /locus_tag="JN125_001060"
     CDS             <1..255
                     /locus_tag="JN125_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708736.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine decarboxylase"
                     /protein_id="HAY8870915.1"
                     /translation="IRGEVELVRIRDAEGRIAAEGALPYPPGVLCVVPGEVWGGAVQR
                     YFLALEEGVNLLPGFSPELQGVYSETDADGMKRLYGYVLK"
     gene            complement(305..1561)
                     /locus_tag="JN125_001061"
     CDS             complement(305..1561)
                     /locus_tag="JN125_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311867.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside permease"
                     /protein_id="HAY8870916.1"
                     /translation="MNLKLQLKILSFLQFCLWGSWLTTLGSYMFVTLKFDGASIGAVY
                     SSLGIAAVFMPALLGIVADKWLSAKWVYAICHTIGAITLFMAAQVTTPEAMFLVILIN
                     SFAYMPTLGLINTISYYRLQNAGMDIVTDFPPIRIWGTIGFIMAMWVVSLSGFELSHM
                     QLYIGAALSAILVLFTLTLPHIPVAKQQANQSWTTLLGLDAFALFKNKRMAIFFIFSM
                     LLGAELQITNMFGNTFLHSFDKDPMFASSFIVQHASIIMSISQISETLFILTIPFFLS
                     RYGIKNVMMISIVAWILRFALFAYGDPTPFGTVLLVLSMIVYGCAFDFFNISGSVFVE
                     KEVSPAIRASAQGMFLMMTNGFGCILGGLVSGKVVEMYTQNGITDWQTVWLIFAGYSV
                     VLAFAFMAMFKYKHVRVPTGTQTVSH"
     gene            complement(1763..2842)
                     /gene="mltC"
                     /locus_tag="JN125_001062"
     CDS             complement(1763..2842)
                     /gene="mltC"
                     /locus_tag="JN125_001062"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417438.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltC"
                     /protein_id="HAY8870917.1"
                     /translation="MKKYLALALIAPLLISCSTTKKGDTYNEAWVKDTNGFDILMGQF
                     AHNIENIWGFKEVVIAGPKDYVKYTDQYQTRSHINFDDGTITIETIAGTEPAAHLRRA
                     IIKTLLMGDDPSSVDLYSDVDDITISKEPFLYGQVVDNTGQPIRWEGRASNFADYLLK
                     NRLQSRSNGLRIIYSVTINMVPNHLDKRAHKYLGMVRQASRKYGVDESLILAIMQTES
                     SFNPYAVSRSDALGLMQVVQHTAGKDVFRSQGKSGTPSRSFLFDPASNIDTGTAYLAM
                     LNNVYLGGIDNPTSRRYAVITAYNGGAGSVLRVFSNDKIQAANIINTMTPGDVYQTLT
                     TRHPSAESRRYLYKVNTAQKSYRRR"
     gene            complement(2907..3182)
                     /locus_tag="JN125_001063"
     CDS             complement(2907..3182)
                     /locus_tag="JN125_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative damage protection protein"
                     /protein_id="HAY8870918.1"
                     /translation="MSRTIFCTFLQREAEGQDFQLYPGELGKRIYNEISKEAWAQWQH
                     KQTMLINEKKLNMMNAEHRKLLEQEMVNFLFEGKEVHIEGYTPEDKK"
     gene            complement(3210..4262)
                     /gene="mutY"
                     /locus_tag="JN125_001064"
     CDS             complement(3210..4262)
                     /gene="mutY"
                     /locus_tag="JN125_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HAY8870919.1"
                     /translation="MQASQFSAQILDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQ
                     VATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNMHKAAQQVATLHGG
                     KFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEV
                     ENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWSL
                     YPGKKPKQTLPERTGYFLLLQHEDEVLLAQRPPSGLWGGLYCFPQFADEESLRQWLAQ
                     RQIAADNLTQLTAFRHTFSHFHLDIVPMWLPVSSFTGCMDEGNALWYNLAQPPSVGLA
                     APVERLLQQLRTGAPV"
     gene            4423..5142
                     /gene="trmB"
                     /locus_tag="JN125_001065"
     CDS             4423..5142
                     /gene="trmB"
                     /locus_tag="JN125_001065"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HAY8870920.1"
                     /translation="MKNDVISPEFDENGRPLRRIRSFVRRQGRLTKGQEHALENYWPV
                     MGVEFSEDMLDFPALFGREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGA
                     CLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVP
                     FAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKNLSESNDYVPRPASRPVTK
                     FEQRGHRLGHGVWDLMFERVK"
     gene            5142..5468
                     /locus_tag="JN125_001066"
     CDS             5142..5468
                     /locus_tag="JN125_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF469 domain-containing protein"
                     /protein_id="HAY8870921.1"
                     /translation="MAKNRSRRLRKKMHIDEFQELGFSVAWRFPEGTSEEQIDKTVDD
                     FINEVIEPNKLAFDGSGYLAWEGLICMQEIGKCTEEHQAIVRKWLEERKLDEVRTSEL
                     FDVWWD"
     gene            5652..6371
                     /locus_tag="JN125_001067"
     CDS             5652..6371
                     /locus_tag="JN125_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2884 domain-containing protein"
                     /protein_id="HAY8870922.1"
                     /translation="MMRKMLLAAALSVTAMTAHADYQCSVTPRDDVIVSPQTVQVKGE
                     NGNLVITPDGNVMYNGKQYSLNAAQREQAKDYQAELRSTLPWIDEGAKSRVEKARIAL
                     DKIIVQEMGESSKMRSRLTKLDAQLKEQMNRIIETRSDGLTFHYKAIDQVRAEGQQLV
                     NQAMGGILQDSINEMGAKAVLKSGGNPLQNVLGSLGGLQSSIQTEWKKQEKDFQQFGK
                     DVCSRVVTLEDSRKALVGNLK"
     gene            6547..7593
                     /gene="ansB"
                     /locus_tag="JN125_001068"
     CDS             6547..7593
                     /gene="ansB"
                     /locus_tag="JN125_001068"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-asparaginase 2"
                     /protein_id="HAY8870923.1"
                     /translation="MEFFKKTALAALVMGFSGAALALPNITILATGGTIAGGGDSATK
                     SNYTAGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINTDCDKT
                     DGFVITHGTDTIEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAAD
                     KASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARK
                     HTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVF
                     DTLATAAKNGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQ
                     TKDPQQIQQIFNQY"
     gene            7710..8717
                     /locus_tag="JN125_001069"
     CDS             7710..8717
                     /locus_tag="JN125_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1202 family protein"
                     /protein_id="HAY8870924.1"
                     /translation="MKKQWIVGTALLMLMTGNAWADGEPPTENILKDQFKKQYHGILK
                     LDAITLKNLDAKGNQATWSAEGDVSSSDDLYTWVGQLADYELLEQTWTKDKPVKFSAM
                     LTSKGTPASGWSVNFYSFQAAASDRGRVVDDIKTNNKYLIVNSEDFNYRFSQLESALN
                     TQKNSIPALEKEVKALDKQMVAAQKAADAYWGKDANGKQMTREEAFKKIHQQRDEFNK
                     QNDSEAFAVKYDKEVYQPAIAACHKQSEECYEVPIQQKRDFDINEQRRQTFLQSQKLS
                     RKLQDDWVTLEKGQYPLTMKVSEINSKKVAILMKIDDINQANERWKKDTEQLRRNGVI
                     K"
     gene            complement(8781..9917)
                     /gene="hemW"
                     /locus_tag="JN125_001070"
     CDS             complement(8781..9917)
                     /gene="hemW"
                     /locus_tag="JN125_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HAY8870925.1"
                     /translation="MVKLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLL
                     CDLDNDVAYAQGREVKTIFIGGGTPSLLSGPAMQTLLDGVRARLPLAADAEITMEANP
                     GTVEADRFVDYQRAGVNRISIGVQSFSEEKLKRLGRIHGPQEAKRAAKLASGLGLRSF
                     NLDLMHGLPDQSLEEALGDLRQAIELNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALW
                     DIFEQGHQLLTAAGYQQYETSAYAKPGYQCQHNLNYWRFGDYIGIGCGAHGKVTFPDG
                     RILRTTKTRHPRGFMQGRYLESQRDVEAADKPFEFFMNRFRLLEAAPRAEFSAYTGLC
                     EDVIRPQLDEAIAQGYLTECADYWQITEHGKLFLNSLLELFLAE"
     gene            complement(9910..10503)
                     /locus_tag="JN125_001071"
     CDS             complement(9910..10503)
                     /locus_tag="JN125_001071"
                     /EC_number="3.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XTP/dITP diphosphatase"
                     /protein_id="HAY8870926.1"
                     /translation="MQKVVLATGNAGKVRELASLLSDFGLDIVAQTDLGVDSAEETGL
                     TFIENAILKARHAAKVTGLPAIADDSGLAVDALGGAPGIYSARYSGEDATDQKNLQKL
                     LETLKDVPDDQRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIF
                     FVPSEGKTAAELTREEKSAISHRGQALKLLLDALRNG"
     gene            complement(10511..10801)
                     /locus_tag="JN125_001072"
     CDS             complement(10511..10801)
                     /locus_tag="JN125_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417428.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggU family protein"
                     /protein_id="HAY8870927.1"
                     /translation="MNAVTVNDDGLVLRLYIQPKASRDSIVGLHGDEVKVAITAPPVD
                     GQANSHLVKFLGKQFRVAKSQVVIEKGELGRHKQIKIINPQQIPPEIAALIN"
     gene            complement(10798..11364)
                     /gene="yggT"
                     /locus_tag="JN125_001073"
     CDS             complement(10798..11364)
                     /gene="yggT"
                     /locus_tag="JN125_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmotic shock tolerance protein YggT"
                     /protein_id="HAY8870928.1"
                     /translation="MNTLTFLLSTVIELYTMVLLLRIWMQWAHCDFYNPFSQFVVKVT
                     QPIIGPLRRVIPAMGPIDSASLLVAYILSFIKAIVLFKVVTFLPIIWIAGLLILLKTI
                     GLLIFWVLLVMAIMSWVSQGRSPIEYVLIQLADPLLRPIRRLLPAMGGIDFSPMILVL
                     LLYVINMGVAEVLQATGNILLPGLWMAL"
     gene            complement(11382..12086)
                     /gene="yggS"
                     /locus_tag="JN125_001074"
     CDS             complement(11382..12086)
                     /gene="yggS"
                     /locus_tag="JN125_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate homeostasis protein"
                     /protein_id="HAY8870929.1"
                     /translation="MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIA
                     EAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHT
                     IDRLRIATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRL
                     RGLMAIPAPESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTM
                     VRIGTAIFGARDYSKK"
     gene            12104..13084
                     /locus_tag="JN125_001075"
     CDS             12104..13084
                     /locus_tag="JN125_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417425.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV pilus twitching motility protein PilT"
                     /protein_id="HAY8870930.1"
                     /translation="MNMEEIVALSVKHNVSDLHLCSAWPARWRIRGLMEAAPFDAPDV
                     EELLREWLDDDQRAILLENGQLDFAVSLAENQRLRGSAFAQRHGISLALRLLPSHCPQ
                     LEQLGAPTVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLNQHADAHILTLEDPVE
                     YIYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELRDSEPIRLALTAAETG
                     HLVLATLHTRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVLLQKLEVDKQEGRVAL
                     FELLINTPAVGNLIREGKTHQLPHVIQTGQQVGMITFQQSYQQRVGEGRL"
     gene            complement(13260..13676)
                     /gene="ruvX"
                     /locus_tag="JN125_001076"
     CDS             complement(13260..13676)
                     /gene="ruvX"
                     /locus_tag="JN125_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HAY8870931.1"
                     /translation="MSGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNL
                     IERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLSTVE
                     ARSGLFEQGGYRALNKGKVDSASAVIILESYFEQGY"
     gene            complement(13676..14311)
                     /locus_tag="JN125_001077"
     CDS             complement(13676..14311)
                     /locus_tag="JN125_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708713.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgE/AlgH family protein"
                     /protein_id="HAY8870932.1"
                     /translation="MTAPFFPRILGAVAFLNQETEPLTMNLQHHFLIAMPALQDPIFR
                     RSVVYICEHNTNGAMGIIVNKPLENLKIEGILEKLKITPEPRDESIRLDKPVMLGGPL
                     AEDRGFILHTPPSNFASSIRISDNTVMTTSRDVLETLGTDKQPSDVLVALGYASWEKG
                     QLEQEILDNAWLTAPADLNILFKTPIADRWREAAKLIGVDILTMPGVAGHA"
     gene            complement(14348..15298)
                     /gene="gshB"
                     /locus_tag="JN125_001078"
     CDS             complement(14348..15298)
                     /gene="gshB"
                     /locus_tag="JN125_001078"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione synthase"
                     /protein_id="HAY8870933.1"
                     /translation="MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLY
                     LINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADLDVLLMRKDPPFDTEFIYATYIL
                     ERAEEKGTLIVNKPQSLRDCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILK
                     PLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEP
                     VPYCLARIPQGGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIG
                     DRLTEINVTSPTCIREIEAEFPVSITGMLMDAIEARLQQQ"
     gene            complement(15311..16042)
                     /gene="rsmE"
                     /locus_tag="JN125_001079"
     CDS             complement(15311..16042)
                     /gene="rsmE"
                     /locus_tag="JN125_001079"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311849.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HAY8870934.1"
                     /translation="MRIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFD
                     GSNQVFDAEITSASKKSVEVKVLEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIEL
                     GVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWC
                     AEQDEGLKLNLHPRASNSINTLPLPVERVRLLIGPEGGLSADEIAMTARYQFTDILLG
                     PRVLRTETTALTAITALQVRFGDLG"
     gene            complement(16122..16829)
                     /gene="endA"
                     /locus_tag="JN125_001080"
     CDS             complement(16122..16829)
                     /gene="endA"
                     /locus_tag="JN125_001080"
                     /EC_number="3.1.21.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease I"
                     /protein_id="HAY8870935.1"
                     /translation="MYRYLSIAAVVLSAAFSGPALAEGINSFSQAKAAAVKVHADAPG
                     TFYCGCKINWQGKKGVVDLQSCGYQVRKNENRASRVEWEHVVPAWQFGHQRQCWQDGG
                     RKNCAKDPVYRKMESDMHNLQPSVGEVNGDRGNFMYSQWNGGEGQYGQCAMKVDFKEK
                     AAEPPARARGAIARTYFYMRDQYNLTLSRQQTQLFNAWNKMYPVTDWECERDERIAKV
                     QGNHNPYVQRACQARKS"
     gene            complement(16924..17421)
                     /locus_tag="JN125_001081"
     CDS             complement(16924..17421)
                     /locus_tag="JN125_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family zinc-dependent metalloprotease"
                     /protein_id="HAY8870936.1"
                     /translation="MKTSRLPIAIQQAVMRRLREKLAQANLKLGRNYPEPKLSYTQRG
                     TSAGTAWLESYKIRLNPVLLLENSEAFIEEVVPHELAHLLVWKHFGRVAPHGKEWKWM
                     MENVLGVPARRTHQFELQSVRRNTFPYRCKCQEHQLTVRRHNRVVRGEAVYRCVHCGE
                     QLVAK"
     gene            complement(17498..18892)
                     /locus_tag="JN125_001082"
     CDS             complement(17498..18892)
                     /locus_tag="JN125_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar porter family MFS transporter"
                     /protein_id="HAY8870937.1"
                     /translation="MPDAKKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFIA
                     DEFQITSHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAA
                     PNVEVLILSRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLS
                     DTAFSYTGAWRWMLGVIIIPAILLLIGVFFLPDSPRWFAAKRRFVDAERVLLRLRDTS
                     AEAKRELDEIRESLQVKQSGWALFKENSNFRRAVFLGVLLQVMQQFTGMNVIMYYAPK
                     IFELAGYTNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAAGMGVL
                     GTMMHIGIHSPSAQYFAIAMLLMFIVGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTA
                     TNWIANMIVGATFLTMLNTLGNANTFWVYAALNVLFILLTLWLVPETKHVSLEHIERN
                     LMKGRKLREIGAHD"
     gene            complement(19328..20482)
                     /gene="metK"
                     /locus_tag="JN125_001083"
     CDS             complement(19328..20482)
                     /gene="metK"
                     /locus_tag="JN125_001083"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HAY8870938.1"
                     /translation="MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACET
                     YVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPD
                     INQGVDRADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPW
                     LRPDAKSQVTFQYDDGKIVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLT
                     SATTFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAA
                     YAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFF
                     DLRPYGLIQMLDLLHPIYKETAAYGHFGREHFPWEKTDKAQLLRDAAGLK"
     gene            complement(20786..21001)
                     /locus_tag="JN125_001084"
     CDS             complement(20786..21001)
                     /locus_tag="JN125_001084"
                     /inference="COORDINATES: protein motif:HMM:NF037550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870939.1"
                     /translation="MGITSAGMQSRDAECGERIFTRTVRQVKQQTTVHYFVSPPRPPV
                     KTNPQAKTLISTRLEVATRKKRRVLFI"
     gene            21137..21268
                     /gene="yqgB"
                     /locus_tag="JN125_001085"
     CDS             21137..21268
                     /gene="yqgB"
                     /locus_tag="JN125_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417414.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid stress response protein YqgB"
                     /protein_id="HAY8870940.1"
                     /translation="MKKKPVAQLERQHSLLENPCAYGLLSQFQAAIVVNCFTLNKII"
     gene            21277..23253
                     /gene="speA"
                     /locus_tag="JN125_001086"
     CDS             21277..23253
                     /gene="speA"
                     /locus_tag="JN125_001086"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HAY8870941.1"
                     /translation="MSDDMSMGLPSSAGEHGVLRSMQEVAMSSQEASKMLRTYNIAWW
                     GNNYYDVNELGHISVCPDPDVPEARVDLAQLVKTREAQGQRLPALFCFPQILQHRLRS
                     INAAFKRARESYGYNGDYFLVYPIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLA
                     HAGMTRSVIVCNGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLNVVPR
                     LGVRARLASQGSGKWQSSGGEKSKFGLAATQVLQLVETLREAGRLDSLQLLHFHLGSQ
                     MANIRDIATGVRESARFYVELHKLGVNIQCFDVGGGLGVDYEGTRSQSDCSVNYGLNE
                     YANNIIWAIGDACEENGLPHPTVITESGRAVTAHHTVLVSNIIGVERNEYTVPTAPAE
                     DAPRALQSMWETWQEMHEPGTRRSLREWLHDSQMDLHDIHIGYSSGTFSLQERAWAEQ
                     LYLSMCHEVQKQLDPQNRAHRPIIDELQERMADKMYVNFSLFQSMPDAWGIDQLFPVL
                     PLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEYDPENPPMLGFFMVG
                     AYQEILGNMHNLFGDTEAVDVFVFPDGSVEVELSDEGDTVADMLQYVQLDPKTLLTQF
                     RDQVKKTDLDAELQQQFLEEFEAGLYGYTYLEDE"
     gene            23390..24310
                     /gene="speB"
                     /locus_tag="JN125_001087"
     CDS             23390..24310
                     /gene="speB"
                     /locus_tag="JN125_001087"
                     /EC_number="3.5.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatinase"
                     /protein_id="HAY8870942.1"
                     /translation="MSTLGNQYDNSLVSNAFGFLRLPMNFQPYDSDADWVITGVPFDM
                     ATSGRAGGRHGPAAIRQVSTNLAWEHNRFPWNFDMRERLNVVDCGDLVYAFGDAREMS
                     EKLQAHAEKLLAAGKRMLSFGGDHFVTLPLLRAHAKHFGKMALVHFDAHTDTYANGCE
                     FDHGTMFYTAPKEGLIDPNHSVQIGIRTEFDKDNGFTVLDACQVNDRSVDDVIAQVKQ
                     IVGDMPVYLTFDIDCLDPAFAPGTGTPVIGGLTSDRAIKLVRGLKDLNIVGMDVVEVA
                     PAYDQSEITALAAATLALEMLYIQAAKKGE"
     gene            complement(24516..25274)
                     /locus_tag="JN125_001088"
     CDS             complement(24516..25274)
                     /locus_tag="JN125_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311838.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HAY8870943.1"
                     /translation="MKIRALLVAMSVATVLTGCQNMDSNGLLSSGAEAFQAYSLSDAQ
                     VKTLSDQACQEMDSKATIAPANSEYAKRLTTIANALGNNINGQPVNYKVYMAKDVNAF
                     AMANGCIRVYSGLMDMMTDNEVEAVIGHEMGHVALGHVKKGMQVALGTNAVRVAAASA
                     GGIVGSLSQSQLGDLGEKLVNSQFSQRQEAEADDYSYDLLRQRGISPAGLATSFEKLA
                     KLEEGRQSSMFDDHPASAERAQHIRDRMSADGIK"
     gene            25552..27543
                     /gene="tkt"
                     /locus_tag="JN125_001089"
     CDS             25552..27543
                     /gene="tkt"
                     /locus_tag="JN125_001089"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HAY8870944.1"
                     /translation="MSSRKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDF
                     LKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPE
                     VGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMME
                     GISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRDIDG
                     HDAASIKRAVEEARAVTDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQ
                     LGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMP
                     SDFDAKAKEFIAKLQANPAKIASRKASQNAIETFGPLLPEFLGGSADLAPSNLTLWSG
                     SKAINEDAAGNYIHYGVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAAL
                     MKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVE
                     RQDGPTALILSRQNLAQQERTEEQLANIARGGYVLKDCAGQPELIFIATGSEVELAVA
                     AYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYKYVG
                     LNGAIIGMTTFGESAPAELLFKEFGFTVDNVVAKAKELL"
     gene            27857..28300
                     /gene="cmtB"
                     /locus_tag="JN125_001090"
     CDS             27857..28300
                     /gene="cmtB"
                     /locus_tag="JN125_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IIA"
                     /protein_id="HAY8870945.1"
                     /translation="MRLSDYFPESSISVIHSAKDWQEAIDFSMVSLLDKNYISENYIQ
                     AIKDSTINNGPYYILAPGVAMPHARPECGALKTGMSLTLLEQGVYFPGNDEPIKLLIG
                     LSAADADSHIGAIQALSELLCEEEILEQLLTASPEKQLADIISRG"
     gene            28328..29716
                     /locus_tag="JN125_001091"
     CDS             28328..29716
                     /locus_tag="JN125_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICB"
                     /protein_id="HAY8870946.1"
                     /translation="MENKSARAKVQAFGGFLTAMVIPNIGAFIAWGFITALFIPTGWL
                     PNEHFAKIVGPMITYLLPVMIGSTGGHLVGGKRGAVMGGIGTIGVIVGAEIPMFLGSM
                     IMGPLGGLVIKYVDKALEKRIPAGFEMVINNFSLGIAGMLLCLLGFEVIGPAVLIANT
                     FVKECIEALVHAGYLPLLSVINEPAKVLFLNNAIDQGVYYPLGMQQASVNGKSIFFMV
                     ASNPGPGLGLLLAFTLFGKGMSKRSAPGAMIIHFLGGIHELYFPYVLMKPLTIIAMIA
                     GGMSGTWMFNLLDGGLVAGPSPGSIFAYLALTPKGSFLATIAGVTVGTLVSFAITSLI
                     LKMEKTVETESEDEFAQSANAVKAMKQEGAFSLSRVKRIAFVCDAGMGSSAMGATTFR
                     KRLEKAGLAIEVKHYAIENVPADADIVVTHASLEGRVKRVTDKPLILINNYIGDPKLD
                     TLFNQLTAEHKH"
     gene            29731..>30079
                     /locus_tag="JN125_001092"
     CDS             29731..>30079
                     /locus_tag="JN125_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HAY8870947.1"
                     /translation="MKTKVAAIYGKRDVRLREFELPEITDNELLVSVISDSVCLSTWK
                     AALLGSEHKRVPDDLENHPVITGHECAGVIVEVGKNLTGKYKKGQRFVLQPAMGLPSG
                     YSAGYSYEYFGGNA"
BASE COUNT         7372 a         7534 c         7937 g         7236 t
ORIGIN      
        1 attcgcggtg aagtggagtt ggtgcggatt cgtgatgccg aagggcgaat tgcggcagaa
       61 ggggcgttgc cttatccacc tggcgtgctt tgcgtggtac ccggggaagt ctggggtggg
      121 gcggttcaac gttatttcct tgcactggaa gaaggggtaa atttgttgcc gggattttcg
      181 ccggagctgc aaggtgttta tagcgaaacc gatgcggatg gcatgaaacg gttgtacggt
      241 tatgtgttga agtaagaata aaaaaaacgg gtcaccttct ggcgacccgt ttttctttgc
      301 gtaattagtg gctaaccgtc tgtgtgcctg tcgggacacg aacgtgttta tatttgaaca
      361 tcgccatgaa cgcgaaggcc agaaccacgg agtaaccagc gaaaatcaac catacggtct
      421 gccagtcggt aatgccgttt tgggtgtaca tctcaacaac tttaccgctc acgaggccgc
      481 cgaggataca gccgaagccg ttagtcatca tcaggaacat cccttgtgca ctggcgcgaa
      541 ttgccgggct aacttctttt tcgacaaaca ccgaaccaga gatgttgaag aagtcgaatg
      601 cgcaaccgta aacgatcatc gacagtacca gcagtacagt accgaacgga gtcgggtcgc
      661 cgtaagcaaa cagcgcaaaa cgcaggatcc acgccacaat actgatcatc attacgttct
      721 taataccgta gcggcttaag aagaacggga tggtcagaat gaacagggtt tcagagatct
      781 gcgaaatcga catgatgatt gacgcatgct gcacaataaa gctgctggca aacatcggat
      841 ctttgtcgaa gctgtgcagg aaggtattac cgaacatgtt ggtaatctgc agttccgcgc
      901 ccagcagcat tgagaagata aagaagattg ccatacgctt gtttttaaac agcgcgaatg
      961 catcgaggcc cagcagggtt gtccagctct gattcgcttg ctgtttagca accggaatat
     1021 gcggcagagt cagggtaaac agaaccagaa tggcggaaag tgctgcgcca atatacagct
     1081 gcatgtggct taattcgaag ccagacaggc tcaccaccca cattgccatg ataaagccga
     1141 tggtgcccca gatacggatt ggcgggaagt cagtaacgat atccatcccg gcattttgca
     1201 ggcgatagta agagatggtg ttgattaacc caagcgttgg catataagca aacgagttaa
     1261 tcaatatcac aaggaacatc gcctccggtg tcgtgacctg tgccgccatg aacagcgtga
     1321 tagcgccaat ggtgtggcaa atggcatata cccatttcgc acttaaccat ttgtcggcca
     1381 caatccccag cagcgcaggc ataaagaccg ctgcgatacc cagtgagcta taaactgcgc
     1441 caatagaagc accgtcaaac ttcagggtaa caaacatata ggagccgagg gtcgtcagcc
     1501 aacttcccca cagacagaac tgcagaaaag agaggatttt cagctgcagc ttaagattca
     1561 tgttaatttc ctcacatcgt gatgcggatg agtgtttgaa aaagcacatt tgaccgtgcg
     1621 agatgatggg attctatcaa cttcgcggac tggttttttg ttacctgtgg caaataattg
     1681 caaacattcc caatttgcaa aacgaaattg tgatgtggat aacatttttg cccctgagca
     1741 tcgtcagggg cggttaatgg aattatcggc ggcggtagga tttttgcgcg gtattcactt
     1801 tataaagata acggcgagat tccgcagagg gatggcgggt cgtcagcgtc tgataaacat
     1861 cgcccggcgt catggtgtta ataatattgg cagcctgaat cttatcattc gaaaagactc
     1921 gcagcacgct gcctgcgccg ccgttatagg cggtgatgac ggcataacgc cgcgatgttg
     1981 ggttatcaat tccgccgaga taaacattgt tcagcatcgc cagatacgcg gtgccggtat
     2041 caatattgct ggcaggatca aacaagaaac tgcggctcgg cgtgccggat ttcccctgcg
     2101 agcggaacac atctttcccg gcagtatgtt gtaccacctg cattaatccc agcgcatcgg
     2161 aacggctgac cgcatacggg ttaaaggaag attcggtctg cataattgcc agaatcagcg
     2221 actcatcaac gccatatttc cgtgacgcct ggcggaccat gccgagatat ttgtgcgcac
     2281 gtttatcaag gtggttcggt accatgttaa tggtgacgct gtagatgata cgcagcccgt
     2341 tactgcggct ttgcagacgg tttttcagca gataatccgc gaagttgctt gcgcgacctt
     2401 cccagcgaat cggctgcccg gtgttgtcca ccacctgacc gtaaaggaaa ggttctttcg
     2461 aaatcgtaat atcatcaacg tcggaataga gatcgaccga actcggatcg tcacccatca
     2521 gcaacgtttt gataattgcc cggcgcaaat gcgcggcagg ttctgtcccg gcgatagttt
     2581 cgatagtaat cgtaccgtca tcgaagttga tgtggctgcg ggtctgatat tgatcggtgt
     2641 atttcacgta gtccttagga ccggcgatca ccacctcttt gaatccccag atgttctcaa
     2701 tattgtgggc aaattgcccc atcagaatat caaaaccgtt ggtatctttg acccaggctt
     2761 cgttataggt atcgcctttt ttggtcgtcg aacaggagat gagcaacggc gcaatcaaag
     2821 ccagcgcgag atattttttc atcattcagg gtgcgtgttg tgtttgtttt tatgcaagtt
     2881 gccggaggcg tgctccggca ctgtttttat tttttatctt ccggcgtata gccctcgata
     2941 tgcacctctt taccctcgaa caggaagttg accatctcct gctcaagcag cttgcggtgc
     3001 tcggcattca tcatgttgag tttcttttca ttaatcagca tggtttgctt gtgctgccac
     3061 tgcgcccagg cttctttgga gatctcgtta tagatgcgtt ttcccagctc gccggggtac
     3121 agctgaaaat cctgaccttc tgcttctcgt tgcaggaaag tacaaaaaat cgttctgctc
     3181 ataaatcatc ctctttatcg actcacgcgc taaaccggcg cgccagtgcg taactgctgt
     3241 aacaaacgct ccacgggagc cgccaggcca actgacggcg gttgcgctaa gttataccag
     3301 agcgcattgc cttcatccat gcagccggtg aatgacgaca cgggaagcca cataggcaca
     3361 atatctaagt ggaaatggct gaaggtatgc cgaaacgcgg tcagttgcgt caggttatcg
     3421 gcagcaatct gccgttgcgc cagccactgc cgcaaacttt cttcgtcggc aaactgcggg
     3481 aaacagtata aaccgcccca caatccgctc ggcggacgct gcgccagcaa tacttcatct
     3541 tcgtgctgta acagcaaaaa gtagccggtg cgctccggca gcgtctgttt cggttttttg
     3601 cccggataaa gcgaccagct attattggcg gcggcaatac atccgttttg tagcggacag
     3661 agcgaacatt tcggcttcga gcgcgtacaa atcatcgcgc ccaaatccat catcgcctga
     3721 ttaaaccgtt ccacgccgac cgcgggcgtc acctgctcgc tcaaactcca taatttattc
     3781 tcgacctctt ttttcccagg ccagccgctt acagcatagc agcgcgccag cacgcgtttg
     3841 acgttaccgt cgagaatcgg aaagtgctta cccagagaaa gcgagagaat cgcgcctgcg
     3901 gtggaacgcc cgacgcccgg taacgccgcg acttcttcaa aggtttccgg gaatttaccg
     3961 ccgtgtaagg tcgccacttg ttgtgccgct ttatgcatat tgcgcgcgcg ggcgtaatag
     4021 ccaagcccgg tccacaagtg gagaacttcg tcgagcggcg cattggcgag atcggtcacc
     4081 gtcgggaagc gcgccataaa gcgttcaaaa taggggataa cggtcgcaac ctgagtttgt
     4141 tgcaacatca cttctgagag ccatactttg tagggcgtct tgtcaatttg ccagggcagc
     4201 gtttttcgcc cgtatttatc gtaccagtcc agaatctggg ctgaaaattg cgacgcttgc
     4261 atggtcaccg aattcactgt tgttgggggc aagattgcag cacagcgacg gcagggtgta
     4321 aaccggaact ttccgcagcc acggccttat catgcttgca tccggcaact aactttggat
     4381 aatgcccgtt ttcagaacac tttcacaagc gactaaatct ttatgaaaaa cgacgtcatt
     4441 tcaccggaat ttgatgaaaa cggccgccca ctgcgccgta tccgtagttt tgtgcgccgc
     4501 caggggcgac tgaccaaagg ccaggaacat gcgctggaaa actactggcc ggtgatgggc
     4561 gttgagttca gcgaagatat gctggatttc cccgcgcttt ttggccgtga agcgccggtg
     4621 acgcttgaga ttggttttgg catgggggcg tcgctggtgg caatggctaa agatcgccct
     4681 gagcaggact tcctcggcat tgaagtgcat tcaccgggcg ttggtgcgtg cctggcttct
     4741 gcgcatgaag aaggtttaag caacctgcga gtgatgtgtc acgatgcggt tgaagtgctg
     4801 cataaaatga ttcctgacaa ttcattgcgc atggtgcagc tctttttccc tgacccgtgg
     4861 cacaaagcgc gccataataa acgccgtatc gtacaggtgc cgtttgccga actggtaaaa
     4921 agcaaactgc agctgggggg cgtattccat atggcgaccg actgggaacc ttatgcggaa
     4981 catatgcttg aagtgatgtc ttctattgac ggttataaaa acctgtcaga gagcaatgat
     5041 tacgtaccgc gtccggcatc acgtccggtg acgaaatttg aacaacgtgg tcatcgtctt
     5101 ggtcacggag tatgggactt aatgttcgag agggtgaaat aatggcaaag aaccgtagcc
     5161 gtcgtctgcg taaaaaaatg cacatcgacg aattccagga attaggattt tcggtggcat
     5221 ggcgattccc ggaaggtaca tcggaagaac agattgataa aaccgttgat gattttatta
     5281 acgaggttat cgaaccgaac aaactggcct ttgacggcag cggttatctg gcctgggaag
     5341 gtctgatctg catgcaggaa atcggcaaat gcaccgaaga acatcaggcg attgtgcgta
     5401 agtggctgga agagcgcaaa ctggatgagg tacgcaccag cgaacttttc gacgtttggt
     5461 gggactaaga aagcatacgg gcgatgacaa atgcaaaact gcctgatgcg ctacgcttat
     5521 caggcctgga aagatgcacg atcgagtagg cgggataagg tgtttacgcc gcatccggca
     5581 tggaaaacgc gtactttgtt atcaatctgg ggccagcaaa tgctggcctg attttttctt
     5641 gagggaagac tatgatgcgc aaaatgctgc tggcggcagc actttcagtg acggcaatga
     5701 ccgctcacgc cgactaccag tgcagcgtca cgccgcgtga cgatgtgatt gtcagcccgc
     5761 aaaccgtgca ggtgaagggc gaaaacggca atctggtgat cacgccagac ggcaacgtga
     5821 tgtataacgg taagcaatat tccctgaatg ccgcccagcg cgagcaggcg aaggattatc
     5881 aggctgaact acgcagcacg ctgccgtgga ttgatgaagg cgcgaaaagc cgcgtcgaaa
     5941 aagcccgtat tgcgctggat aaaattatcg ttcaggagat gggcgaaagc agcaaaatgc
     6001 gcagccgtct gaccaaactt gatgcgcagc tgaaagagca gatgaaccgc attatcgaaa
     6061 cgcgcagcga tggcctgacg tttcactata aagccattga tcaggttcgc gccgaaggcc
     6121 agcaattagt gaatcaggca atgggtggaa ttttacagga cagcattaat gaaatgggcg
     6181 cgaaagcggt gctgaaaagc ggcggtaacc cattacagaa tgtgctggga agcctggggg
     6241 ggctgcaatc ctcaatccaa accgagtgga aaaagcagga aaaagatttc cagcagtttg
     6301 gcaaagatgt ttgtagccgc gttgtgactc tggaagatag ccgcaaagcc ctggtcggga
     6361 atttaaaata atcctctatt ttaagacggc ataatacttt tttatgccgt ttaattcttc
     6421 gttttgttac ctgcctctaa ctttgtagat ctccaaaata tattcacgtt gtaaattgtt
     6481 taacgtcaaa tttcccatac agagctaagg gataatgcgt agcgttcacg taactggagg
     6541 aatgaaatgg agtttttcaa aaagacggca cttgccgcac tggttatggg ttttagtggt
     6601 gcagcattgg cattacccaa tatcaccatt ttagcaaccg gcgggaccat tgccggtggt
     6661 ggtgactccg caaccaaatc taactacaca gcgggtaaag ttggcgtaga aaatctggtt
     6721 aatgcggtgc cgcaactaaa agacattgcg aacgttaaag gcgagcaggt agtgaatatc
     6781 ggctcccagg acatgaacga taatgtctgg ctgacactgg cgaaaaaaat taacaccgac
     6841 tgcgataaaa ccgacggctt cgtcattacc cacggtaccg acacgataga agaaaccgct
     6901 tacttcctcg acctgacggt gaaatgcgac aaaccggtgg tgatggtcgg cgcaatgcgc
     6961 ccgtccacgt ccatgagcgc agacggtcca ttcaacctgt ataacgcggt agtgaccgca
     7021 gctgataaag catccgctaa tcgtggcgtg ctggtggtga tgaacgacac tgtactggac
     7081 ggtcgcgatg taaccaaaac caacaccacc gacgtagcga ccttcaagtc tgttaactac
     7141 ggtcctctgg gatacattca caacggtaag attgactacc aacgtacccc ggcacgtaag
     7201 cacaccagcg atacgccatt cgatgtctct aagctgaatg agctgccgaa agtcggcatc
     7261 gtttataact acgctaacgc atccgatctt ccggctaaag cactggtaga tgcgggctat
     7321 gatggcatcg ttagcgctgg tgtgggtaat ggtaacctgt ataaatccgt gttcgacacc
     7381 ctggcaaccg ccgcgaaaaa cggcactgca gtagtgcgtt cttcccgcgt accgacgggt
     7441 gctaccactc aggatgctga agtggatgat gcgaaatacg gcttcgtcgc ctctggcacg
     7501 ctgaacccgc aaaaagcgcg cgtcctgctg cagctggctc tgacgcaaac caaagatccg
     7561 cagcagatcc agcagatctt caatcagtac taatcacctc gccccggtat cgtgccgggg
     7621 ctttttcact tcagacttac gtccattgcc aattttcatt accctaatga taatcaccgg
     7681 aataaattat tccgcgtgag gtttttcggg tgaaaaagca atggattgtt ggcacggcac
     7741 tgcttatgtt gatgactggt aatgcctggg cagatggcga accgccaact gaaaatatct
     7801 taaaagatca attcaaaaag cagtatcacg gcattctcaa gcttgatgct atcaccttaa
     7861 aaaatcttga tgctaagggt aatcaggcca cctggtcagc ggaaggcgat gtctcttcca
     7921 gtgacgatct ctatacctgg gtcggtcagt tggcagatta cgaactgctc gaacagacct
     7981 ggacgaaaga taaaccggta aaattctcgg cgatgttaac cagtaaagga acgcccgcgt
     8041 ctggctggtc ggtgaacttt tactcttttc aggcggcagc cagcgatcgt gggcgggtgg
     8101 tcgacgatat caaaacgaat aataaatatc tgatcgtgaa tagcgaagat ttcaattatc
     8161 gctttagtca gcttgaatct gcgttgaata cccagaagaa ctcgattcct gcgctggaaa
     8221 aggaagtgaa agcgcttgat aagcaaatgg tggcggcgca gaaagcagcg gatgcatatt
     8281 ggggaaaaga tgcaaacggt aagcaaatga cccgcgaaga agcctttaaa aaaattcacc
     8341 aacagcgtga tgagtttaat aaacagaacg atagcgaggc gttcgcggtt aaatatgaca
     8401 aagaggttta tcaaccggcg attgcggcat gtcataaaca gagtgaagag tgttatgaag
     8461 tgccgattca gcagaaacga gatttcgata tcaacgaaca acggcgacag acttttctgc
     8521 aatcacaaaa actcagccgt aaattgcagg atgactgggt aacgctcgaa aaagggcaat
     8581 atccgttaac gatgaaagtt tcagaaataa acagtaaaaa agtcgcgatt ttgatgaaaa
     8641 ttgacgatat caaccaagct aatgaacgct ggaaaaaaga taccgaacaa ctgcggcgca
     8701 atggggtgat taagtaagtt tgatatagtg cacgatttgt agcaggatgc ggcgttgacc
     8761 ccgcatccgg caatacaagt ttactcagcc agaaaaagct ccagcagcga atttaaaaac
     8821 agcttcccat gttccgttat ctgccagtaa tccgcacatt ctgtgagata accctgggca
     8881 atcgcctcgt ctaactgtgg gcgaatcaca tcttcgcaaa gcccggtata cgcactaaac
     8941 tctgcgcgtg gcgcggcctc cagcaagcga aagcggttca taaagaactc aaacggctta
     9001 tctgcggctt cgacatcacg ctggctttcc agataccttc cttgcataaa accacgagga
     9061 tgacgcgttt tagtggtacg cagaatgcgc ccatccggga aggtgacttt gccgtgcgcg
     9121 ccgcagccaa taccgatgta gtcaccaaat cgccagtagt tgagattgtg ctggcactga
     9181 taaccgggtt tggcgtaagc ggaagtttca tattgctgat aacccgctgc ggttaataac
     9241 tgatgcccct gttcgaaaat atcccacagc gcgtcatcgt ccggcagcac cggtggtcgc
     9301 gaaccaaaca gcgtattggg ttcgatggtc agttgatacc aggaaagatg cggcggattc
     9361 agttcaatgg cctggcgtag atcgccaagc gcctcttcca gtgattgatc cggtagtcca
     9421 tgcatcaaat caaggttaaa gctacgtaac cctaaaccgc tcgccagctt tgccgctcgt
     9481 ttcgcttctt gcgggccatg aatgcgccca agtcgtttca gcttttcttc gctaaaactc
     9541 tgcacaccaa tagagatgcg gttcacacca gcacgctgat aatcgacaaa gcgatcggct
     9601 tctaccgtac cagggttcgc ttccatagta atttctgcat ccgctgccag cggcaaacgc
     9661 gcacgcacgc cgtccagcag cgtttgcatc gccgggccgg aaagcaggct cggcgtacca
     9721 ccgccaataa agattgtctt tacttcacgg ccctgagcgt aagccacatc attgtccaga
     9781 tcgcaaagca gatgctgaac ataatcgtcg tgcggcactt ctcctttcaa cgcgtgagag
     9841 ttgaaatcgc agtacgggca tttctgcacg caccacggga tgtgaatgta gagactcagc
     9901 ggcggtaatt taaccattac gtaaagcgtc cagcagcagt ttcaacgcct gaccacggtg
     9961 ggaaatggcg ctcttttctt cgcgggtcag ttcggcggcg gttttccctt cggaaggtac
    10021 gaagaagatt ggatcataac caaagccacc agtgcccgct ggttcgcgag taatcacgcc
    10081 cggccagctg ccgtggcata ccagcggagt cggatcttcc gcgtgacgca gatataccag
    10141 cacgcagtgg aaacgtgcct gacgttggtc gtccggtacg tctttcagtg tttccaacag
    10201 tttttgcaga ttcttttgat cggtcgcgtc ttcaccggaa taacgcgcgg agtaaatacc
    10261 cggcgcgcca cccagcgcat ctaccgccag accagagtcg tcggcaattg ccggtaaacc
    10321 ggtcactttt gccgcatggc gcgctttcag aatcgcgttt tcgataaagg ttaggccggt
    10381 ttcttcagcg gaatcaacgc cgaggtctgt ttgtgccacg atatcaagac caaagtcgct
    10441 aagcagcgac gccagctcac gcactttacc ggcattgccg gttgcgagga caactttttg
    10501 cataggatac ctaattaatt aacgccgcga tttctggcgg gatttgttgc ggattaatga
    10561 ttttaatttg tttgtggcgg ccaagttcgc ctttttcaat caccacctgg cttttggcaa
    10621 cccggaattg cttaccgaga aacttcacca gatgactgtt ggcctggccg tcaactggcg
    10681 gcgcggtaat ggcgacttta acttcgtcgc catgtaaacc gacaatagaa tcacggctgg
    10741 ctttcggctg aatatagagc cgtaaaacca gaccgtcatc attaactgtt acggcattca
    10801 taacgccatc cacagccccg gcagcaggat gtttccggtt gcctgtaata cttctgcgac
    10861 acccatattg atgacataca gcagcagaac gaggatcatc ggcgagaaat caatcccacc
    10921 cattgccggt agcaagcggc gaatcgggcg cagcagcgga tcggccagct gaatcagcac
    10981 gtattcaatc gggctacgac cctggcttac ccagctcata atcgccatca ccagcaggac
    11041 ccagaaaatc agcaagccga tggttttcag cagaatcagt aaaccggcaa tccagatgat
    11101 tggcaggaag gtcaccactt taaacagcac aatggctttg ataaaactga gaatataggc
    11161 aaccagcagc gaggcgctgt caatgggacc cattgccgga ataacgcggc gcagtggccc
    11221 gataattggc tgcgttacct tcactacaaa ctgtgagaag gggttgtaaa aatcacaatg
    11281 agcccactgc atccagatgc gtaataacag caccatggta tacagctcaa tgaccgttga
    11341 aagcaggaaa gtcaacgtat tcatggcgtt cctttaattc cttatttttt agagtaatca
    11401 cgcgcaccaa aaattgcagt gccgatacga accatcgtgc tacctgccgc aatggcggct
    11461 tccatatcgt ccgacattcc cagagagagc gtgtcgatat gcgggtagcg cgttttcagt
    11521 ccggcaaatg ctacagccat ttggcgtgca acttcaaact gccttacata ttctgactca
    11581 ggcgcaggga ttgccatcag cccgcgcaga cgtaaacgcg gtagttcagc gaccgccgct
    11641 gccagctcgt ccagttctgc cagttgaatc ccagacttac tgttttcatc actaatatta
    11701 atttgaatca gtacgttaag agggggaagt tctgccgggc gctgatcgtt gaggcgggta
    11761 gcaatgcgca aacggtcgat ggtatgacac cagtcgaaat gctctgccac caggcggctt
    11821 ttattagact gcaacgggcc aataaaatgc cattctaatc ctgttacgcc cagttcctga
    11881 aagtggcgaa ttttatctac cccttcctga acgtagtttt caccaaattg acgctgcccg
    11941 gcatcaatgg cttctgcgat ggcgctcgca ggttttgttt tactgactgc aagcagcgta
    12001 atttcttctg gagaacggcc gcaacgcgtt gcagccgctg agattttgtc ccggacctgt
    12061 gccaggttat gcgcaatatc gttcattttc cgaggatctt agtatgaata tggaagaaat
    12121 tgtggccctt agtgtaaagc ataacgtctc ggatctacat ctgtgcagcg cctggcccgc
    12181 acgatggcgc attcgcgggc taatggaagc tgcgccgttt gatgcgccgg acgtcgaaga
    12241 gctactgcgg gagtggctgg atgacgatca gcgggcaata ttgctggaaa atggccagct
    12301 ggattttgcc gtgtcgctgg cggaaaacca gcgattgcgt ggcagcgcat tcgcgcaacg
    12361 gcatggcatt tcgctggcgt tacggctgtt accttcgcac tgcccgcagc tcgaacagct
    12421 tggcgcacca acggtattgc cggaattact caagagcgag aatggcctga ttctggtgac
    12481 gggggcgacg gggagcggca aatctaccac gctggcggcg atggttggct atctcaatca
    12541 acatgccgat gcgcatattc tgacgctgga agatcctgtt gaatatatct atgccagcca
    12601 gcgatgtttg atccagcagc gggaaattgg tttgcactgt atgacgttcg catcgggatt
    12661 gcgggccgca ttgcgggaag atcctgatgt gattttgctc ggagagctgc gtgacagcga
    12721 gccaatccgt ctggcactga cggcggcaga aaccgggcat ttggtgctgg caacattaca
    12781 tacgcgtggt gccgcgcagg cagttgagcg actggtggat tcatttccgg cgcaggaaaa
    12841 agatcccgta cgtaatcaac tggcaggtag tttacgggcc gtgttgttac aaaagctgga
    12901 agtggataaa caggaaggac gcgtggcgct gtttgaatta ttgattaaca ctcccgcggt
    12961 ggggaatttg attcgcgaag ggaaaaccca ccagttaccg catgttattc aaaccgggca
    13021 gcaggtgggg atgataacgt ttcagcagag ttatcagcag cgggtggggg aagggcgttt
    13081 gtgacgttgc catgcccgat gcgcaagttt atagggccta taaaggcaat aaatgtctga
    13141 tgcgacgcta acgcgtctta tcagacctac agccgctgcc agatgtgtgc tggataaggc
    13201 gttcacgccg catccggcaa gatggcggta acgactatcc gccaggcttt tagatcgcct
    13261 taatatccct gctcgaaata gctttcgaga ataataaccg cagaggctga gtcgactttg
    13321 cctttgttga gcgcccgata gccgccctgt tcaaacagac cggaacgggc ttccacggtg
    13381 ctaagacgtt cgtcatggag ctttacttca acaccgaaac gaccatgaat acggttggca
    13441 aatttacgcg ctctggcagt caatggttgc tcggtgccgt ccatattcag cggcaaaccg
    13501 acgatgattt cgtccggctg ccactctttc agtaaacgtt cgatgaggtt ccagtccggc
    13561 gtaccgtcct gtgctttaat tgcaggcaaa gggcgagcag tgccggtaat gcgttggccg
    13621 accgctacgc caatgctttt ggtgccgaag tcgaaggcga gtaaggttcc actcatcagg
    13681 cgtgccctgc cacaccaggc atggtgagaa tatccacacc aatcagtttt gccgcctcgc
    13741 gccagcggtc ggcaatcggc gttttgaaca gaatattcag atccgccggg gccgttagcc
    13801 acgcgttatc gagaatttct tgttccagtt gacctttttc ccaggaggca tagcccagag
    13861 ccaccaatac gtcagacggt tgtttatcgg tgccgagcgt ttccagcaca tcgcgggaag
    13921 tggtcatcac cgtgttgtct gaaatgcgaa tgctggaagc aaaattggag ggcggagtat
    13981 gcaaaataaa cccgcgatct tcagccagtg ggccgccgag cataaccggt ttatccagac
    14041 ggattgattc atcacgcggc tccggcgtga tcttcagctt ttccagaatc ccttcaattt
    14101 tgagattttc cagcggcttg ttgacgatga tccccattgc accattggta ttatgttcgc
    14161 aaatgtagac cacggaacga cggaaaatcg gatcctggag agcaggcatg gcaataagaa
    14221 agtgatgctg taaattcatt gtcagaggtt ctgtttcctg gttcaaaaaa gcaacagcgc
    14281 ccagtatgcg tggaaagaag ggcgctgtca ctcagagtct caacgagatc cttctcgcta
    14341 aggtgggtta ctgctgctgt aaacgtgctt cgatggcatc cattaacatt ccggtgatcg
    14401 acaccggaaa ctctgcttca atctcacgaa tacaggttgg gctggtgacg ttaatttcag
    14461 tcagacggtc gccgatgata tccagaccaa caaaaatcag ccctttttct ttcagcgtcg
    14521 gcccgatctg acgggcgatt ttccagtcac tttccgtcag cggccgaggt tcaccgcgac
    14581 caccggcagc cagattgcca cgggtttcgc ccccctgcgg aatacgcgcc aggcagtacg
    14641 gtaccggctc gccatccacc accagcacgc gtttgtcgcc atctttaatg gctggcaggt
    14701 aattttgcgc catgcagtag cgagtgccat gctcagtcag ggtttcggca atcacgccga
    14761 ggtttggatc gccttctttc acgcggaaaa tcgacgcgcc gcccataccg tccagcggct
    14821 taagaatgat gtcgctgtgt ttctcccaga acgcttttag ctgcgcttta ttgcgcgtaa
    14881 ccagcgtttc tggcgttaag tcagagaacc aggcggtaaa cagtttctcg ttacagtcgc
    14941 gcaggctctg cggcttgtta acgatcagcg tccctttctc ttcggcacgt tccagaatat
    15001 aggtcgcgta gataaactcg gtatcaaacg gcgggtcttt acgcatcagg agcacatcga
    15061 gatcggccag cggcagatcc tgttcaccga cgaacgaaaa ccactcttcg tagttctgct
    15121 tcacgttcag cgtgcgggta tgggcgcggg cttcgccatt gatcagatac agatcgccca
    15181 tctccatata gtgaagttcg taaccacgac gctgtgcttc cagcaacata gcgaaactgg
    15241 aatctttctt gatgttgatg tttgcgatgg ggtccatcac gatgccgagc ttgatcatta
    15301 ttcttctccg ttagcccaaa tcgccaaatc gtacttgtag cgcggtaatg gcggtgagcg
    15361 cagttgtctc tgtacgcaaa acgcgaggtc ccaacaggat atcagtaaat tgatagcggg
    15421 cagtcatggc aatttcatct gccgataaac cgccttccgg gccaatcagc aggcggacgc
    15481 gttcaaccgg taacggcaac gtattgatgc tgttactggc gcgcgggtga agattcagtt
    15541 tcagtccttc atcctgctct gcacaccagg cttccagatc catcgctgga cggatttccg
    15601 gcacccggtt acgaccacac tgctcacagg cagcaattgc aatcttctgc cactgctgga
    15661 gcttcttgtt cagacgttca ctatccagtt taacgccgca gcgctcagaa aaaagtggcg
    15721 taatgaggct tacaccgagt tcgatcgatt tctggatcgt aaattccatt ttttcaccac
    15781 gcgacatcac ctgaccgagg tgaatatgca gcggagattc gcgatcgtcg atcttgcctt
    15841 ccagcacctt cacttccacg ctttttttgc tggcgctggt aatttcggcg tcaaagacct
    15901 ggttgctacc gtcaaacaat tgcaacgcct gccccggccc catgcgcagt acgcgcccga
    15961 tatggttggc ggcatcttcg caaagcgcga tgtgagaatg gctggtcagt ggttcaggat
    16021 gataaatgcg ggggatacgc atagttaaaa atccgcgtcg tctccccacg cggttgtacg
    16081 cgtggggtag gggttaacaa aaagagtccc gctagtgtag gttagctctt tcgcgcctgg
    16141 caagcgcgtt gcacatacgg gttatgattg ccttgcacct tcgcgatgcg ttcatcgcgc
    16201 tcgcactccc agtcggtaac cggatacatc ttgttccatg cgttgaacag ctgcgtttgc
    16261 tggcgagaga gtgtcaggtt gtattggtcg cgcatataga agtaggtgcg cgcaatggca
    16321 ccgcgtgcac gcgctggtgg ttcggcagct ttttctttga aatcgacctt catggcgcat
    16381 tgaccgtact ggccttcgcc gccattccac tggctgtaca taaagttgcc gcgatcgcca
    16441 ttcacctcac cgactgacgg ctgcaggtta tgcatatcgc tttccatctt gcgatagacc
    16501 ggatctttag cgcagttttt acgtccaccg tcctgccagc actggcgctg gtgaccgaac
    16561 tgccaggcgg gaacgacgtg ttcccactct acgcggctgg ctcggttttc atttttgcgc
    16621 acctgatagc cgcacgattg cagatcaaca acgccttttt tgccctgcca gttaatttta
    16681 catccgcaat aaaacgtacc gggcgcgtca gcgtggactt ttaccgccgc ggctttcgcc
    16741 tgagaaaaac tattgatacc ttcggccaac gccgggccgg aaaatgctgc gctcagtacc
    16801 accgcagcaa tagacaaata acggtacatc acttactccg tgttaaaacg agccagcaac
    16861 gtagcgaaag ttgttttggt atgcaatcag ccagatcagg aaagttcctg atagttcaga
    16921 tggttatttt gcgaccagtt gttcgccgca gtgaacacag cgatagacgg cttcgccacg
    16981 aactacgcga ttatggcggc gtacggtaag ctgatgctcc tggcacttgc agcggtaggg
    17041 gaaggtgttg cgacgcacgg attgcagttc gaactgatgc gtacgacggg cgggaacacc
    17101 cagcacgttt tccatcatcc acttccactc tttgccatgt ggtgctacgc gcccgaaatg
    17161 tttccatacc agcaaatgtg ccagttcgtg cggcaccact tcttcaataa aggcttcact
    17221 gttttccaac agcaaaacgg gattgaggcg gattttatag ctttccagcc aggctgttcc
    17281 ggcggaggtg ccgcgctggg tataagagag ttttggctcc gggtagttac gccccaattt
    17341 caggttagcc tgggcgagtt tttcccgcag gcgacgcata acggcctgtt ggatggcgat
    17401 agggagacgg gatgttttca tagcggcaga ggatagagcg aagaaaagat gactgcaaga
    17461 ggtggcttcc tccgcgatgg gaggaagctt ggggagatta atcgtgagcg cctatttcgc
    17521 gcagtttacg acctttcatc agattacgtt caatatgttc cagcgaaacg tgtttggttt
    17581 ccggtaccag ccacaatgtc agcaggataa acagtacgtt cagagccgca tacacccaga
    17641 aggtgttggc gttacccagt gtgttgagca tggtcaggaa cgttgcgcca acgatcatgt
    17701 tggcaatcca gttggtggcg gtggagcagg tgatgccaaa atcgcggcct ttcagcggct
    17761 gaatttcgga gcacagtacc caaatcagcg gaccggcact catggcaaaa ccgacaataa
    17821 acatcagcag catggcgatg gcgaaatact gcgctgacgg agagtgaata ccgatatgca
    17881 tcattgtacc gagtacgccc atgccagcag ccatcaccag gaagcccagc gttagcgttg
    17941 gtttacgtcc ccagcggtca acaaggccga ttgcgataaa ggtggcaagt acgttggtca
    18001 ggccgacaat cactgtcccc cacatttgct cggtagtgtt ggtataaccc gccagttcga
    18061 agattttcgg cgcgtaatac atgatgacgt tcatcccggt gaattgctgc attacctgta
    18121 acagtacgcc aaggaacacc gcgcggcgga agttgctatt ctctttaaac agcgcccagc
    18181 cactctgttt aacctgcaaa ctttcacgga tttcatccag ttcgcgtttc gcttccgcgc
    18241 tggtgtcacg caggcgtagc agcacgcgtt cggcatcaac aaaacggcgt ttggcggcaa
    18301 accaacgtgg gctgtctggc aggaagaaga caccaatcag cagcaaaatt gccgggatga
    18361 taatcacacc cagcatccag cgccatgcac cggtgtagct gaaggcggta tcagaaagat
    18421 aagcaccgag gatcccgata gtgatcatca actgatacat cgagatcata ctgccacgaa
    18481 ttttttccgg cgcaatttca gagaggtaca gcggtgcggt ataagaggcc acacccaccg
    18541 ccagccccag tagaacgcgg gaaagaatca gtacttcaac gtttggcgca gccgcagaga
    18601 acagcgaacc ggcaacaaac aaaattgcgc cgatcatcag gctctttttg cgcccgagtt
    18661 taaaggagag ccagccgctg cccaccgcac cgactgccgc accgaacatc atggagctta
    18721 cgacccattc ttgcgtgtgc gaagtaatct ggaattcatc tgcaataaac ggcagtgcgc
    18781 cagcaattac accgatatcc aggccaaaga gtaatcccgc cagagcggca aggaagcaga
    18841 cgaaaaacgt cattgccttg tttgaccgcc cctgtttttt agcgtcaggc atgatgccct
    18901 ccaatatggt tattttttat tgtgaattaa gataggtgag tatgacgtaa aaagatgtga
    18961 agcaaatcac attagtgtaa tcgcttacac taacatttat cttagttatg gtttaagtgc
    19021 atgaaaataa ttgagttata tcatcataga ttaaacgctg ttatctgcaa ttaagacttt
    19081 actgaaaaga aatgtaacaa ctgtgaaaac tgaataataa tatgaaaata ttacaaatat
    19141 ttggctggtg ttattggtgt aatcggtttc agtagtgatg ataatttgcg ataaaacgtg
    19201 ttgaggaaga atgatgttat tgtgcgggca gctttttgcc ggatgcggcg tgaatgccta
    19261 tccaccgcgg tgaggtaaaa gaaaaaggcc agcgcgaggc tggcctttga aagcaggtga
    19321 agaaagatta cttcagaccg gcagcatcgc gcagcagctg cgctttgtcg gttttttccc
    19381 acgggaaatg ttcacgacca aagtgaccgt atgctgcggt ttctttgtag atcgggtgca
    19441 gcagatccag catctgaatc agaccgtatg ggcgcaggtc gaagaactca cgtaccagca
    19501 gagtcagttg ttcagaaggc actttctcag taccgaaagt ttctaccatg atggaggtcg
    19561 gttcagccac gccgattgcg taggaaacct gaatttcaca acgatcggcc aggccagcag
    19621 caacgatgtt tttcgcgaca taacgtgctg cgtaggctgc ggaacggtcc acttttgatg
    19681 gatctttacc agagaatgct ccgccaccgt gacgtgccat gccgccgtag gtatcaacga
    19741 taattttacg accagtcaga ccgcagtcac ccatcgggcc accgataaca aaacgaccgg
    19801 tcgggttgat gaagaatgtg gtggcagaag tcagccattc agcgggcaga attggcttga
    19861 tgatctcttc cattaccgct tcttgcagcg atttctggtc gatctcttca gagtgctgag
    19921 tggaaagcac gacagcatca ataccaacga ttttgccgtc gtcatactgg aaagtcacct
    19981 ggcttttcgc gtccgggcgc agccacggca gagtgccgtt tttacgcact tcagcctgac
    20041 gctgtaccag acggtgtgca taggtgatag gtgctggcat cagcacgtcg gtttcattag
    20101 ttgcgtagcc aaacatcaga ccttggtcac ccgcgccctg ttccagcgga tcggcacggt
    20161 caacgccctg gttgatgtca ggagactgtt tgccgatagc gctcagaacc gcacaggagt
    20221 tagcgtcaaa gcccatgtcg gaatgcacat agccaatttc gcgaacggtg ttacgggtga
    20281 tctcttcgat gtctacccag gcgctggtgg tgatttcgcc gccaactaaa accatgccgg
    20341 tttttacgta ggtttcgcaa gcaacgcgtg ctttcggatc ctgttcgagg atcgcgtcta
    20401 aaacggcatc agagatttgg tcagcaattt tgtcaggatg cccttcagag acggactcgg
    20461 acgtaaaaag gtgttttgcc atatttaata tcacctaaag agaatttggt tagctcaaac
    20521 tgttgtgtgg attttctgtg gtagcggatc ctaccacgac tctgcaggtt aaaaacactg
    20581 gcagtctgag tgttaatcgg tatggatgga ttaacatctg gatggctatt ttaggtcaat
    20641 tcttcacccg atttccactt ttttttgaat cgtgtctcat tctgttaaaa acgtggctgg
    20701 aaatttttcc tgacaatgcc ggcattctgc gtatttatat tttgcaattt tctgccattg
    20761 tggggtataa aacgcagcgc gcggcttaaa taaaaagcac acgacgtttc tttcgtgttg
    20821 ccacttccag ccgggttgaa atcagagttt tggcttgtgg gttcgtctta acaggcggcc
    20881 gtggaggtga tacgaaataa tgaaccgtag tctgctgctt aacctgtctc accgttctgg
    20941 tgaagattcg ttccccgcac tctgcatctc tgctttgcat acctgccgat gttataccca
    21001 tctcggcgct tctcaggatt caagagctgg ttacagttac tgaggactga acaagggcgc
    21061 tcttgtaaaa acaagagttt tctcgtggtt tcgccgaact gtcacactta cgttcggtta
    21121 tgtgcttaat aatgttatga aaaagaaacc ggttgcgcag ttggagcgtc agcattcact
    21181 gctggaaaat ccatgtgctt atgggttgtt atcgcagttc caggctgcga tagtcgttaa
    21241 ctgttttaca cttaataaaa taatttgagg ttcgctatgt ctgacgacat gtctatgggt
    21301 ttgccttcgt cagcgggcga acacggtgta ctacgctcca tgcaggaggt tgcaatgagc
    21361 tcccaggaag ccagcaagat gctgcgtact tacaatattg cctggtgggg caataactac
    21421 tatgacgtta acgagctggg ccacatcagc gtgtgcccgg acccggacgt cccggaagct
    21481 cgcgtcgatc tcgcgcagtt agtgaaaact cgtgaagcac agggtcagcg tctgcctgca
    21541 ctgttctgtt tcccacagat cctgcagcac cgtttgcgtt ccattaacgc cgcgttcaaa
    21601 cgtgcgaggg aatcctacgg ctataacggc gattacttcc ttgtttatcc gatcaaagtt
    21661 aaccagcacc gccgcgtgat tgagtccctg attcattcgg gcgaaccgct gggtctggaa
    21721 gccggttcca aagccgagtt gatggcagtg ctggcacatg ctggcatgac ccgtagcgtc
    21781 atcgtctgca acggttataa agaccgcgaa tatatccgcc tggcattaat tggcgagaag
    21841 atggggcaca aggtctatct ggtcattgag aagatgtcag aaatcgccat tgtgctggat
    21901 gaagcagaac gtctgaatgt cgttcctcgt ctgggcgtgc gtgcacgtct ggcttcgcag
    21961 ggctcgggta aatggcagtc ttccggcggg gaaaaatcga agttcggcct ggctgcgact
    22021 caggtactgc aactggttga aacgctgcgt gaagctgggc gtctcgacag cctgcaacta
    22081 ctgcacttcc acctcggttc gcagatggcg aatattcgcg atatcgccac gggcgttcgt
    22141 gaatccgcgc gtttctatgt ggaactgcac aagctgggcg tcaatattca gtgcttcgac
    22201 gtcggcggcg gtctgggcgt ggactatgaa ggcacccgtt cgcagtctga ctgctccgta
    22261 aactacggcc tcaatgaata tgccaacaac atcatctggg cgattggtga tgcgtgtgaa
    22321 gaaaacggtc tgccgcatcc gacggtaatc accgaatcgg gtcgtgcggt gactgcgcat
    22381 cacaccgtgc tggtgtctaa tatcatcggc gtggaacgta acgaatacac ggtgccgacc
    22441 gcgcctgcag aagatgcgcc gcgcgcgctg caaagcatgt gggaaacctg gcaggagatg
    22501 cacgaaccgg gaactcgccg ttctctgcgt gaatggttac acgacagtca gatggatctg
    22561 cacgacattc atatcggcta ctcttccggc acctttagcc tgcaagaacg tgcatgggca
    22621 gaacaactct atctgagcat gtgccatgaa gtgcagaagc aactggatcc gcaaaaccgt
    22681 gcgcatcgtc cgataatcga cgaactgcag gaacgtatgg cggacaaaat gtacgtcaat
    22741 ttctcgctgt tccagtcaat gccggacgca tgggggatcg accagttgtt cccggttctg
    22801 ccgctggaag ggctggatca agtgccggaa cgtcgcgctg tgctgctgga tattacctgt
    22861 gactctgacg gtgctatcga ccactatatt gatggtgatg gtattgccac gacaatgcca
    22921 atgccggagt acgatccaga gaatccgccg atgctcggtt tctttatggt cggcgcatat
    22981 caggagatcc tcggcaacat gcacaacctg ttcggtgata ccgaagcggt tgacgtgttc
    23041 gtcttccctg acggtagtgt agaagtggaa ctgtctgacg aaggcgatac cgttgcggat
    23101 atgctgcaat atgtgcagct cgatccgaaa acgctgttaa ctcagttccg cgatcaagtg
    23161 aagaaaaccg atcttgatgc tgaactgcaa caacagttcc ttgaagagtt cgaggcaggt
    23221 ttgtacggtt atacttatct ggaagatgag taagtccgta ttacttgaat ccgcttaatt
    23281 tagcggtgat aatccgccac aatttattgt gacaaatcca acccttcctc gtcgggccta
    23341 acgacgcgga agggtttttt tatatcgact ttgtaatagg agtccatcca tgagcacctt
    23401 aggtaatcaa tacgataact cactggtttc caacgccttt ggttttttac gcctgccgat
    23461 gaacttccag ccgtatgaca gcgatgctga ctgggtgatt actggtgtgc cgttcgatat
    23521 ggccacttct ggtcgtgcgg ggggacgcca cggtccggca gcgatccgtc aggtttcgac
    23581 gaatcttgcc tgggaacaca atcgcttccc gtggaatttc gacatgcgtg agcgcctgaa
    23641 cgtcgtggac tgcggcgatc tggtatatgc ctttggcgat gcccgtgaga tgagcgaaaa
    23701 actgcaggca cacgccgaga agctgctggc tgccggtaag cgtatgctct ctttcggtgg
    23761 tgaccacttt gttacgctgc cgctgctgcg tgctcatgcg aagcatttcg gcaaaatggc
    23821 gctggtacac tttgacgccc acaccgatac ctacgcgaac ggttgtgaat ttgaccacgg
    23881 caccatgttc tataccgcgc cgaaagaagg tctgatcgac ccgaatcatt ccgtgcagat
    23941 tggtattcgt accgagtttg ataaagacaa cggttttacc gtgctggacg cctgccaggt
    24001 gaacgatcgc agcgtggatg acgttatcgc ccaagtgaaa cagattgtgg gtgatatgcc
    24061 ggtttacctg acctttgata tcgactgcct ggatcctgct ttcgcgccgg gaaccggtac
    24121 gccagtgatt ggcggcctga cctccgatcg cgccattaaa ctggtacgcg gcctgaaaga
    24181 tctcaacatt gttgggatgg acgtagtgga agtggctccg gcatacgatc agtcggaaat
    24241 caccgctctg gctgcggcga cgctggcgct ggagatgctg tatattcagg cggcgaaaaa
    24301 gggcgagtaa gcaccagatg cgatgcgcac gggtaaaacg tgccattaat gtcggatgcg
    24361 gcgtgaacgc cttatccgac ctacgttcgg cacccgtagg ccggataaga tgcgccagca
    24421 tcgcatccgg caatgcgcac aaggtaacaa atgtgccatt aatgtcagat gcggcgtgaa
    24481 cgccttatct gacctacgtt cgacaccacc aggctttact taatcccatc cgcgctcatg
    24541 cgatcgcgaa tatgctgggc gcgttcggcg gatgccggat ggtcgtcaaa cattgagctt
    24601 tggcggcctt cttccagttt cgccagtttt tcaaagctgg tggcaagacc tgccgggctg
    24661 atgccgcgtt ggcgcagaag atcgtaagaa taatcatcgg cttctgcttc ctggcgctgg
    24721 gagaattgcg aattgactaa tttctcgccc agatcaccaa gttgtgattg agataaactg
    24781 ccgacaatcc cgcccgcaga ggccgcagct actcgcacgg catttgtacc aagcgccacc
    24841 tgcatccctt tcttcacatg gcctaacgcc acgtgcccca tctcgtgacc gatcaccgct
    24901 tcgacttcgt tatccgtcat catatccatc agcccgctat agacgcggat acagccgtta
    24961 gccattgcaa aggcgttcac atccttcgcc atatacactt tgtaattcac cggctgaccg
    25021 ttgatattgt tgcctagcgc attggcaata gttgtcagac gtttagcgta ttcgctattg
    25081 gctggcgcaa tcgtcgcctt gctgtccatc tcctgacatg cctgatcgct cagggttttc
    25141 acctgcgcat cactcaaact gtaagcctga aaagcttccg ctcctgatga gagcagtccg
    25201 ttggagtcca tattctggca accagtcagt accgttgcca cgctcattgc taccaataag
    25261 gcgcgaattt tcatgttttc tcttccgcac aaggtcagga ttattctaaa aatgcgccgt
    25321 ttgcaggtga atcgacgctc agtctcagta taaggaaaag cgcagcggac gggcgagtag
    25381 attgcgcaac atgcgagcat gatccagaga tttctgaagc ggcaaaagga tgttccatgt
    25441 acatgacgcg cggcttgcgg taaattgttg gcaaattttc cggcgtagcc caaaacgcgc
    25501 tgtcgtcaag tcgttaaggg cgtgcccttc atcatccgat ctggagtcaa aatgtcctca
    25561 cgtaaagagc ttgccaatgc tattcgtgcg ctgagcatgg acgcagtaca gaaagccaaa
    25621 tccggtcacc cgggtgcccc tatgggtatg gctgacattg ccgaagtcct gtggcgtgat
    25681 ttcctgaaac acaacccgca gaatccgtcc tgggctgacc gtgaccgctt cgtgctgtcc
    25741 aacggccacg gctccatgct gatctacagc ctgctgcacc tcaccggtta cgatctgccg
    25801 atggaagaac tgaaaaactt ccgtcagctg cactctaaaa ctccgggcca cccggaagtg
    25861 ggttacaccg ctggtgtgga aaccaccacc ggtccgctgg gtcagggtat tgccaacgca
    25921 gtcggtatgg cgattgcaga aaaaacgctg gcggcgcagt ttaaccgtcc gggccacgac
    25981 attgtcgacc actacaccta cgccttcatg ggcgacggct gcatgatgga aggcatctcc
    26041 cacgaagttt gctctctggc gggtacgctg aagctgggta aactgattgc gttctacgat
    26101 gacaacggta tctctattga tggtcacgtt gaaggctggt tcaccgacga caccgcaatg
    26161 cgtttcgaag cttacggctg gcacgttatt cgcgacatcg acggtcatga cgcggcatcc
    26221 atcaaacgcg cagtagaaga agcgcgcgca gtgactgaca aaccgtccct gctgatgtgc
    26281 aaaaccatca tcggtttcgg ttccccgaac aaagccggta ctcacgactc ccacggtgcg
    26341 ccgctgggcg acgctgaaat tgccctgacc cgcgaacagc tgggctggaa atatgcaccg
    26401 ttcgaaatcc cgtctgaaat ctatgctcag tgggatgcga aagaagcagg ccaggcgaaa
    26461 gaatccgcat ggaacgagaa attcgctgct tacgcgaaag cttatccgca ggaagccgct
    26521 gaatttaccc gccgtatgaa aggcgaaatg ccgtctgact tcgacgcgaa agcaaaagag
    26581 ttcattgcta aactgcaggc taacccggcg aaaatcgcca gccgtaaagc gtctcagaat
    26641 gctatcgaaa ctttcggtcc gctgttgccg gaattcctcg gcggttctgc tgacctggca
    26701 ccgtctaacc tgaccctgtg gtctggttct aaagcaatca acgaagatgc tgcgggtaac
    26761 tacatccact acggtgttcg cgagttcggt atgaccgcga ttgctaacgg tatctccctg
    26821 cacggtggtt tcctgccgta cacctccacc ttcctgatgt tcgtggaata cgcacgtaac
    26881 gccgtacgta tggctgcgct gatgaaacag cgtcaggtga tggtttacac ccacgactcc
    26941 atcggtctgg gcgaagatgg cccgactcac cagccggtag agcaggtcgc ttctctgcgc
    27001 gtaaccccga acatgtctac atggcgtccg tgtgaccagg ttgaatccgc ggtcgcgtgg
    27061 aaatacggtg ttgagcgtca ggacggcccg accgcactga tcctctcccg tcagaacctg
    27121 gcgcagcagg aacgaactga agagcaactg gcaaacatcg cgcgcggtgg ttatgtgctg
    27181 aaagactgcg ccggtcagcc ggaactgatt ttcatcgcta ccggttcaga agttgaactg
    27241 gctgttgctg cctacgaaaa actgactgcc gaaggcgtga aagcgcgcgt ggtgtccatg
    27301 ccgtctaccg acgcatttga caagcaggat gctgcttacc gtgaatccgt actgccgaaa
    27361 gcggttactg cacgcgttgc ggtagaagcg ggtattgctg actactggta caagtatgtt
    27421 ggcctgaatg gcgctatcat cggtatgacc accttcggtg agtcagctcc ggcagagttg
    27481 ctgttcaaag agttcggctt caccgtcgac aacgtcgttg cgaaagcaaa agaactgctg
    27541 taattagcat ttcgggtaaa aaggtcgctt cggcgacctt ttttattacc ttgatatgtc
    27601 cgtttgcgga caagcaatag ataaagcgtg ttgcagatca caaatattta tatgcaataa
    27661 atatcaatta tgtaatatgc atcacgatat gcgtattgac atttgttgtt atatctataa
    27721 ctcaatgtta tataagaaat taataattca ctgttttcaa aacaccggtt tccctgctca
    27781 attgctttca ttaaaccgca cgagtatttt atttttaccg ccggacggta ccctaaaaat
    27841 aaaataagga taatttatgc ggcttagtga ctattttcca gaatcatcaa tctcagttat
    27901 acattcagca aaagattggc aggaagctat cgatttctcg atggtatcat tgctggataa
    27961 aaactatatc agcgagaatt acattcaggc aattaaagat tccaccatta acaatggccc
    28021 ttattatatt ctcgcaccag gcgtggcaat gcctcatgcg cgaccggaat gtggggcgct
    28081 taaaaccggg atgtctttga cattacttga acaaggtgtt tattttccgg ggaatgacga
    28141 accaattaaa ttactcatcg gactctctgc tgccgatgcc gattcgcaca ttggcgctat
    28201 tcaggcgtta agtgaattac tgtgcgaaga agaaatactc gaacaactct taacagcatc
    28261 accagaaaaa caattagcgg acattatcag ccgcggataa ttactctctc ctctacagga
    28321 taatattatg gaaaacaagt ctgctcgtgc aaaggtccag gcttttgggg gctttttgac
    28381 tgcaatggtc atccccaata ttggtgcttt tattgcctgg ggttttatta ctgcgttatt
    28441 tattcccacc ggttggctgc ctaacgaaca tttcgccaaa attgtcggcc cgatgattac
    28501 ctatttattg cccgtgatga ttggttctac aggtggtcat ctggtcggcg gtaaacgcgg
    28561 ggcggtcatg ggcggaatag gtactattgg tgtgatcgtt ggcgcagaga tcccgatgtt
    28621 ccttggctca atgatcatgg ggccgctcgg tgggttggtc ataaaatatg tcgataaggc
    28681 actggaaaaa cgcatacctg ccggttttga gatggttatc aataacttct cattaggtat
    28741 cgcggggatg ctcctttgtc tgctgggttt tgaagtgatc ggcccggcgg tgttaattgc
    28801 caatactttc gtcaaagagt gtatcgaggc gctggtacat gcgggttatc tgcctctgct
    28861 gtcagtcatc aatgaaccgg cgaaagtgct tttccttaat aatgcgatcg atcagggcgt
    28921 ctattatccg ctgggaatgc aacaggcttc ggttaacggt aaatccatct tctttatggt
    28981 ggcctctaac ccaggtccgg gcctggggct gctgctggcg tttaccttgt ttggtaaagg
    29041 gatgagtaaa cgttctgcgc ccggggcgat gattattcac ttcctcggtg ggatccacga
    29101 actgtatttc ccatatgtgc tgatgaagcc gctgactatt attgccatga ttgcgggcgg
    29161 tatgtctggt acctggatgt ttaacttact ggacggtggt ctggtggctg gcccaagtcc
    29221 ggggtctatc tttgcttacc tggcactgac gccgaaaggc tcgttcctgg cgacaattgc
    29281 cggtgttacg gtaggtaccc tggtgtcctt tgctattact tcgctgatac tgaagatgga
    29341 aaaaacggtg gaaacggaga gcgaagatga gtttgctcag tcagccaatg cggttaaggc
    29401 gatgaaacaa gagggtgcat tctcgttaag cagggttaag cgtatcgcct ttgtttgcga
    29461 tgcggggatg ggctccagtg cgatgggcgc gaccaccttc cgtaaacgcc tggaaaaagc
    29521 ggggctggca atagaagtaa aacattacgc gatagaaaac gtgcctgcgg atgccgatat
    29581 cgtcgtcact cacgccagtc tggaagggcg cgtgaaacgt gtgacggata aaccgctgat
    29641 attgattaat aactatattg gcgatccaaa actcgacact ttatttaatc aattaaccgc
    29701 cgaacataaa cactgattac agaggtaaaa atgaaaacca aagttgctgc tatttatggc
    29761 aagcgggatg tccgtctgcg cgaatttgaa ctgccagaaa ttaccgataa tgaactgtta
    29821 gtgagtgtaa tttctgacag cgtctgttta tcgacctgga aagcggcgtt actcggtagt
    29881 gaacataaac gcgtacccga cgatttagaa aatcatccgg tcattaccgg gcatgaatgt
    29941 gccggggtta ttgtcgaagt gggtaaaaat ctcactggca aatataaaaa aggccagcgt
    30001 tttgtattgc aaccggcgat ggggttacca agcggatatt cagcaggcta cagctacgaa
    30061 tattttggcg gtaacgcca
//
LOCUS       DADMHM010000028        30052 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.029, whole genome shotgun sequence.
ACCESSION   DADMHM010000028 DADMHM010000000
VERSION     DADMHM010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 30052)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30052)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30052
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.029"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..634)
                     /locus_tag="JN125_001093"
     CDS             complement(<1..634)
                     /locus_tag="JN125_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-trehalose-phosphate synthase"
                     /protein_id="HAY8870948.1"
                     /translation="MSRLVVVSNRIAPPDEHAASAGGLAVGILGALKAAGGLWFGWSG
                     ETGNEDQPLKKVKKGNITWASFNLSEQDLDEYYNQFSNAVLWPAFHYRLDLMQFQRPA
                     WDGYLRVNALLADKLLPLLQDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPT
                     PEIFNALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKS"
     gene            complement(609..1406)
                     /gene="otsB"
                     /locus_tag="JN125_001094"
     CDS             complement(609..1406)
                     /gene="otsB"
                     /locus_tag="JN125_001094"
                     /EC_number="3.1.3.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose-phosphatase"
                     /protein_id="HAY8870949.1"
                     /translation="MTEPLTETPELSAKYAWFFDLDGTLEIKPHPDQVVVPDNILQGL
                     QLLATASDGALALISGRSMVELDALAKPYRFPLAGVHGAERRDINGKTHIVHLPDAIA
                     RDISVQLHTVIAQYPGAELEAKGMAFALHYRQAPQHEDALMTLAQRITQIWPQMALQQ
                     GKCVVEIKPRGTSKGEAIAAFMQEAPFIGRTPVFLGDDLTDESGFAVVNRLGGMSVKI
                     GTGATQASWRLAGVPDVWSRLEMITTALQQKRENNRSDDYESFSRSI"
     gene            complement(1573..2562)
                     /locus_tag="JN125_001095"
     CDS             complement(1573..2562)
                     /locus_tag="JN125_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose ABC transporter permease AraH"
                     /protein_id="HAY8870950.1"
                     /translation="MMSSVSTSGSGAPKSSFSFGRIWDQYGMLVVFAVLFIACAIFVP
                     NFATFINMKGLGLAISMSGMVACGMLFCLASGDFDLSVASVIACAGVTTAVVINLTES
                     LWIGVAAGLLLGILCGLVNGFVIAKLKINALITTLATMQIVRGLAYIISDGKAVGIED
                     ESFFALGYANWFGLPAPIWLTVACLIIFGLLLNKTTFGRNTLAIGGNEEAARLAGVPV
                     VRTKIIIFVLSGLVSAIAGIILASRMTSGQPMTSIGYELIVISACVLGGVSLKGGIGK
                     ISYVVAGILILGTVENAMNLLNISPFAQYVVRGLILLAAVIFDRYKQKAKRTV"
     gene            complement(2574..4088)
                     /locus_tag="JN125_001096"
     CDS             complement(2574..4088)
                     /locus_tag="JN125_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose ABC transporter ATP-binding protein
                     AraG"
                     /protein_id="HAY8870951.1"
                     /translation="MQQSTPYLSFRGIGKTFPGVKALTDISFDCYAGQVHALMGENGA
                     GKSTLLKILSGNYAPTTGSVVINGQEMSFSDTTAALNAGVAIIYQELHLVPEMTVAEN
                     IYLGQLPHKGGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLSIGQWQMVEIAKALAR
                     NAKIIAFDEPTSSLSAREIDNLFRVIRELRKEGRVILYVSHRMEEIFALSDAITVFKD
                     GRYVKTFTDMQQVDHDALVQAMVGRDIGDIYGWQPRSYGEERLRLDAVKALGVRTPIS
                     LAVRSGEIVGLFGLVGAGRSELMKGLFGGTQITAGQVYIDQQPIDIRKPSHAIAAGMM
                     LCPEDRKAEGIIPVHSVRDNINISARRKHVLGGCVINNGWEENNADQHIRSLNIKTPG
                     AEQLIMNLSGGNQQKAILGRWLSEEMKVILLDEPTRGIDVGAKHEIYNVIYALAAQGV
                     AVLFASSDLPEVLGVADRIVVMREGEIAGELLHEQADERQALSLAMPKVSQAVA"
     gene            complement(4158..5147)
                     /locus_tag="JN125_001097"
     CDS             complement(4158..5147)
                     /locus_tag="JN125_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001397210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arabinose ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY8870952.1"
                     /translation="MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEW
                     KFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKAR
                     GYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAV
                     MVITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPE
                     VKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKVQATGFYGSLL
                     PSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKKGLGGK"
     gene            5861..6364
                     /locus_tag="JN125_001098"
     CDS             5861..6364
                     /locus_tag="JN125_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin-like protein"
                     /protein_id="HAY8870953.1"
                     /translation="MATAGMLLKLNSQMNREFYASNLYLHLSNWCSEQSLNGTATFLR
                     AQAQSNVTQMMRMFNFMKSVGATPIVKAIDVPGEKLNSLEELFQKTMEEYEQRSSTLA
                     QLADEAKELNDDSTVNFLRDLEKEQQHDGLLLQTILDEVRSAKLAGMCPVQTDQHVLN
                     VVSHQLH"
     gene            complement(6443..6694)
                     /locus_tag="JN125_001099"
     CDS             complement(6443..6694)
                     /locus_tag="JN125_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416416.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2766 domain-containing protein"
                     /protein_id="HAY8870954.1"
                     /translation="MSQPLNADQELVSDVVACQLVIKQILDVLDVIAPVEVREKMSSQ
                     LKNIDFSNHPAAADPVTMRAIQKAIALIELKFTPQGESH"
     gene            complement(6809..6895)
                     /gene="azuC"
                     /locus_tag="JN125_001100"
     CDS             complement(6809..6895)
                     /gene="azuC"
                     /locus_tag="JN125_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein AzuC"
                     /protein_id="HAY8870955.1"
                     /translation="MKLRKILKSMFNNYCKTFKDVPPGNMFR"
     gene            7158..7481
                     /locus_tag="JN125_001101"
     CDS             7158..7481
                     /locus_tag="JN125_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870956.1"
                     /translation="MRLLILTLSLITLAGCTVTRQAHVSEVDAATGIVRLVYDQAFLQ
                     HAHTDRYVSRGIADRACQQEGYTHAIPFGQPVGNCSLFAGSLCLNTEFTLSYQCHHSA
                     FPVFL"
     gene            7652..8149
                     /gene="ftnA"
                     /locus_tag="JN125_001102"
     CDS             7652..8149
                     /gene="ftnA"
                     /locus_tag="JN125_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin"
                     /protein_id="HAY8870957.1"
                     /translation="MLKPEMIEKLNEQMNLELYSSLLYQQMSAWCSYHTFEGAAAFLR
                     RHAQEEMTHMQHLFDYLTDTGNLPRINTVESPFAEYSSLDELFQETYKHEQLITQKIN
                     ELAHAAMTNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKLSLAGKSGEGLYFIDKELST
                     LDTQN"
     gene            complement(8187..8426)
                     /locus_tag="JN125_001103"
     CDS             complement(8187..8426)
                     /locus_tag="JN125_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YecH family protein"
                     /protein_id="HAY8870958.1"
                     /translation="MDSIHGHEVLNMMIESGEQYTHASLEAAIKARFGEQARFHTCSA
                     EGMTAGELVAFLAAKGKFIPSKDGFSTDQSKICRH"
     gene            8617..9828
                     /gene="tyrP"
                     /locus_tag="JN125_001104"
     CDS             8617..9828
                     /gene="tyrP"
                     /locus_tag="JN125_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine transporter TyrP"
                     /protein_id="HAY8870959.1"
                     /translation="MKNRTLGSVFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLW
                     ALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGA
                     GELLASSISDWTGISMSATAGVLLFTFVAGGVVCVGTSLVDLFNRFLFSAKIIFLVVM
                     LVLLLPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMDGNVRKLRRVF
                     ITGSAIPLVAYIFWQVATLGSIDSTTFMGLLANHAGLNGLLQALREMVASPHVELAVH
                     LFADLALATSFLGVALGLFDYLADLFQRSNTVGGRLQTGAITFLPPLAFALFYPRGFV
                     MALGYAGVALAVLALIIPSLLTWQSRKHNPQAGYRVKGGRPALVVVFLCGIAVIGVQF
                     LIAAGLLPEVG"
     gene            complement(9890..10555)
                     /gene="yecA"
                     /locus_tag="JN125_001105"
     CDS             complement(9890..10555)
                     /gene="yecA"
                     /locus_tag="JN125_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0149 family protein YecA"
                     /protein_id="HAY8870960.1"
                     /translation="MKTGPLNESELEWLDDILTKYNTNHAILDVAELDDLLTAVLSSP
                     QEIEPEQWLVAVWGGADYVPRWASEKEMTRFMNLAFQHMADTAARLNEFPEQFEPLFG
                     LREVDGSELTIVEEWCFGYMRGVALSDWSTLPDSLKPALEAIALHGTEENFERVEKMS
                     PEAFEERVDAIRLAALDLHAYWMAHPQEKAVQQPIKAEEKPGRNDPCPCGSGKKFKQC
                     CLH"
     gene            complement(10751..10837)
                     /locus_tag="JN125_001106"
     tRNA            complement(10751..10837)
                     /locus_tag="JN125_001106"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(10801..10803),aa:Leu,seq:taa)
     gene            complement(10850..10923)
                     /locus_tag="JN125_001107"
     tRNA            complement(10850..10923)
                     /locus_tag="JN125_001107"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(10889..10891),aa:Cys,seq:gca)
     gene            complement(10978..11053)
                     /locus_tag="JN125_001108"
     tRNA            complement(10978..11053)
                     /locus_tag="JN125_001108"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(11018..11020),aa:Gly,seq:gcc)
     gene            complement(11205..11753)
                     /gene="pgsA"
                     /locus_tag="JN125_001109"
     CDS             complement(11205..11753)
                     /gene="pgsA"
                     /locus_tag="JN125_001109"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HAY8870961.1"
                     /translation="MQFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAV
                     TDWFDGFLARRWNQSTRFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIARE
                     IIISALREWMAELGKRSSVAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVA
                     AVLTLWSMLQYLSAARADLLDQ"
     gene            complement(11810..13642)
                     /gene="uvrC"
                     /locus_tag="JN125_001110"
     CDS             complement(11810..13642)
                     /gene="uvrC"
                     /locus_tag="JN125_001110"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310678.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HAY8870962.1"
                     /translation="MSDQFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLS
                     SYFRSNLASRKTEALVAQIQQIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSY
                     PFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR
                     NRSRPCLQYQIGRCLGPCVEGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETAS
                     QNLEFEEAARIRDQIQAVRRVTEKQFVSNTGNDLDVIGVAFDAGMACVHVLFIRQGKV
                     LGSRSYFPKVPGGTELSEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLS
                     ELAGRKINVQTKPRGDRARYLKLARTNAATALISKLSQQSTVHQRLTALASVLKLPEV
                     KRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRY
                     GKAIDDSKIPDVILIDGGKGQLAQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLET
                     LFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGP
                     KRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH"
     gene            complement(13639..14295)
                     /gene="uvrY"
                     /locus_tag="JN125_001111"
     CDS             complement(13639..14295)
                     /gene="uvrY"
                     /locus_tag="JN125_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrY/SirA/GacA family response regulator
                     transcription factor"
                     /protein_id="HAY8870963.1"
                     /translation="MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCR
                     TNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAGYL
                     SKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
                     ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ
                     "
     gene            14590..14766
                     /locus_tag="JN125_001112"
     CDS             14590..14766
                     /locus_tag="JN125_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8870964.1"
                     /translation="MIKIFIGHYINVFYSTADITLKKQPLLFLAKLMVYSAALTFFTA
                     NFHCNMTRKINEYA"
     gene            14753..14977
                     /locus_tag="JN125_001113"
     CDS             14753..14977
                     /locus_tag="JN125_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2594 family protein"
                     /protein_id="HAY8870965.1"
                     /translation="MSTPDFSTAENNQELANEVSCLKAMLTLMLQAMGQADAGRVMLK
                     MEKQLALIEDETQAAVFSKTVKQIKQAYRQ"
     gene            complement(15044..15766)
                     /gene="sdiA"
                     /locus_tag="JN125_001114"
     CDS             complement(15044..15766)
                     /gene="sdiA"
                     /locus_tag="JN125_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator SdiA"
                     /protein_id="HAY8870966.1"
                     /translation="MQDTDFFSWRRTMLLRFQRMEAAEEVYHEIELQAQQLEYDYYSL
                     CVRHPVPFTRPKVAFYTNYPESWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSE
                     AQPLWEAAHAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILSDELQLKMQLLVRE
                     SLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSISENTVNFHQKNM
                     QKKINAPNKTQVACYAAATGLI"
     gene            complement(15996..16748)
                     /gene="yecC"
                     /locus_tag="JN125_001115"
     CDS             complement(15996..16748)
                     /gene="yecC"
                     /locus_tag="JN125_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-cystine ABC transporter ATP-binding protein
                     YecC"
                     /protein_id="HAY8870967.1"
                     /translation="MSAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTT
                     LLRSINLLEQPEAGTITVGDITIDTARSLSQQKSLIRQLRQHVGFVFQNFNLFPHRTV
                     LENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALA
                     MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMD
                     LGRIVEQGAAKALFADPQQPRTRQFLEKFLLQ"
     gene            complement(16745..17413)
                     /gene="tcyL"
                     /locus_tag="JN125_001116"
     CDS             complement(16745..17413)
                     /gene="tcyL"
                     /locus_tag="JN125_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine ABC transporter permease"
                     /protein_id="HAY8870968.1"
                     /translation="MQESIQLVIDSLPFLLKGAGYTLQLSIGGMFFGLLLGFILALMR
                     LSPIWPVRWLARFYISIFRGTPLIAQLFMIYYGLPQFGIELDPIPSAMIGLSLNTAAY
                     AAETLRAAISSIDKGQWEAAVSIGMTPWQTMRRAILPQAARVVLPPLSNSFISLVKDT
                     SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSTLQNHFENQLNRQE
                     REPK"
     gene            complement(17428..18414)
                     /gene="dcyD"
                     /locus_tag="JN125_001117"
     CDS             complement(17428..18414)
                     /gene="dcyD"
                     /locus_tag="JN125_001117"
                     /EC_number="4.4.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-cysteine desulfhydrase"
                     /protein_id="HAY8870969.1"
                     /translation="MPLHNLTRFPRLEFIGAPTPLEYLPRFSDYLGREIFIKRDDVTP
                     MAMGGNKLRKLEFLAADALREGADTLISAGAIQSNHVRQTAAVAAKLGLHCVALLENP
                     IGTTAENYLTNGNRLLLNLFNTQIEMCDALTDPNAQLEELATRVEAQGFRPYVIPVGG
                     SNALGALGYVESALEIAQQCEGAVNISSVVVASGSAGTHAGLAVGLEHLMPESELIGV
                     TVSRSVADQLPKVVNLQQAIAKELELTASAEILLWDDYFAPGYGVPNDEGMEAVKLLA
                     RLEGILLDPVYTGKAMAGLIDGISQKRFKDEGPILFIHTGGAPALFAYHPHV"
     gene            complement(18519..19319)
                     /gene="tcyJ"
                     /locus_tag="JN125_001118"
     CDS             complement(18519..19319)
                     /gene="tcyJ"
                     /locus_tag="JN125_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystine ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY8870970.1"
                     /translation="MKLAHLGRQALMGVMAVALVAGMSVKSFADEGLLNKVKERGTLL
                     VGLEGTYPPFSFQGDDGKLTGFEVEFAQQLAKHLGVEASLKPTKWDGMLASLDSKRID
                     VVINQVTISDERKKKYDFSTPYTISGIPALVKKGNEGTIKTAADLKGKKVGVGLGTNY
                     EEWLRQNVQGVDVRTYDDDPTKYQDLRVGRIDAILVDRLAALDLVKKTNDTLAVTGEA
                     FSRQESGVALRKGNEDLLKAVNDAIAEMQKDGTLQALSEKWFGADVTK"
     gene            complement(19407..19958)
                     /gene="fliZ"
                     /locus_tag="JN125_001119"
     CDS             complement(19407..19958)
                     /gene="fliZ"
                     /locus_tag="JN125_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310687.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis regulatory protein FliZ"
                     /protein_id="HAY8870971.1"
                     /translation="MMVQHLKRRPLSRYLKDFKHSQAHCAHCRKLLDRITLVRDGKIV
                     NKIEISRLDTLLDENGWQVEQQSWAALCRFCGDLHCKTQSDFFDIIGFKQFLFEQTEM
                     SPGTVREYVVRLRRLGNHLHEQNISLDQLQDGFLDEILAPWLPTTSTNNYRIALRKYQ
                     HYQRQTCTGLVQKSSSLPASDIY"
     gene            complement(20004..20723)
                     /locus_tag="JN125_001120"
                     /pseudo
     CDS             complement(20004..20723)
                     /locus_tag="JN125_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310688.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
     gene            complement(21043..22749)
                     /locus_tag="JN125_001121"
     CDS             complement(21043..22749)
                     /locus_tag="JN125_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000079739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin FliC"
                     /protein_id="HAY8870972.1"
                     /translation="MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDD
                     AAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEGALSEINNNLQRIRELTVQASTG
                     TNSDSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNALAKDGSMKIQVGANDGQTITIDL
                     KKIDSDTLGLNGFNVNGKGTIANKAATVSDLTAAGATGTGPYAVTTNNTVLSASDALS
                     RLKTGDTVTTTGSSAAIYTYDAAKGNFTTQATVADGDVVNFANTLKPAAGTTASGVYT
                     RSTGDVKFDVDANGDVTIGGKAAYLDATGNLSTNNAGIASSAKLSDLFASGSTLATTG
                     SIQLSGTTYNFGAAATSGVTYTKTVSADTVLSTVQSAATANTAVTGATIKYNTGIQSA
                     TASFGGANTNGAGNSNDTYTDADKELTTTASYTINYNVDKDTGTVTVASNGAGATGKF
                     AATVGAQAYVNSTGKLTTETTSAGTATKDPLAALDEAISSIDKFRSSLGAIQNRLDSA
                     VTNLNNTTTNLSEAQSRIQDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLL
                     QG"
     gene            23015..24421
                     /gene="fliD"
                     /locus_tag="JN125_001122"
     CDS             23015..24421
                     /gene="fliD"
                     /locus_tag="JN125_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HAY8870973.1"
                     /translation="MASISSLGVGSGLDLSSILDSLTAAQKATLTPISNQQSSFTAKL
                     SAYGTLKSALTTFQTANTALSKADLFSATSTTSSTTAFSATTAGNAIAGKYTISVTHL
                     AQAQTLTTRTTRDDTKTAIATSDSKLTIQQGGDKDPITIDISAANSSLSGIRDAINNA
                     KAGVSASIINVGNGEYRLSVTSNDTGLDNAMTLSVSGDDALQSFMGYDASASSNGMEV
                     SVAAQNAQLTVNNVAIENSSNTISDALENITLNLHDVTTGNQTLTITQDTSKAQTAIK
                     DWVNAYNSLIDTFSSLTKYTAVDAEADSQSSSNGALLGDSTLRTIQTQLKSMLSNTVS
                     SSSYKTLAQIGITTDPSDGKLELDADKLTAALKKDASGVGALIVGDGKKTGITTTIGS
                     NLTSWLSTTGIIKAATDGVSKTLNKLTKDYNAASDRIDAQVARYKKQFTQLDVLMTSL
                     NSTSSYLTQQFENNSNSK"
     gene            24446..24856
                     /gene="fliS"
                     /locus_tag="JN125_001123"
     CDS             24446..24856
                     /gene="fliS"
                     /locus_tag="JN125_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HAY8870974.1"
                     /translation="MYAAKGTQAYAQIGVESAVMSASQQQLVTMLFDGVLSALVRARL
                     FMQDNNQQGKGVSLSKAINIIENGLRVSLDEESKDELTQNLIALYSYMVRRLLQANLR
                     NDVSAVEEVEALMRNIADAWKESLLSPSLIQDPV"
     gene            24856..25222
                     /gene="fliT"
                     /locus_tag="JN125_001124"
                     /pseudo
     CDS             24856..25222
                     /gene="fliT"
                     /locus_tag="JN125_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001015018.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis regulatory protein FliT"
     gene            25300..26787
                     /gene="amyA"
                     /locus_tag="JN125_001125"
     CDS             25300..26787
                     /gene="amyA"
                     /locus_tag="JN125_001125"
                     /EC_number="3.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HAY8870975.1"
                     /translation="MRNPTLLQCFHWYYPEGGKLWPELAERADGFNDIGINMVWLPPA
                     YKGASGGYSVGYDSYDLFDLGEFDQKGSIPTKYGDKVQLLAAIDALKRNDIAVLLDVV
                     VNHKMGADEKEAIRVQRVNADDRTQIDEEIIECEGWTRYTFPARAGQYSQFIWDFKCF
                     SGIDHIENPDEDGIFKIVNDYTGEGWNDQVDDELGNFDYLMGENIDFRNHAVTEEIKY
                     WARWVMEQTQCDGFRLDAVKHIPAWFYKEWIEHVQEVAPKPLFIVAEYWSHEVDKLQT
                     YIDQVEGKTMLFDAPLQMKFHEASRMGRDYDMTQIFTGTLVEADPFHAVTLVANHDTQ
                     PLQALEAPVEPWFKPLAYALILLRENGVPSVFYPDLYGAHYEDVGGDGQTYPIDMPII
                     EQLDELILARQRFAHGVQTLFFDHPNCIAFSRSGTDEYPGCVVVMSNGDDGEKTIHLG
                     ENYGNKTWRDFLGNRQESVITDEHGEATFFCNGGSVSVWVIEEVI"
     gene            complement(26821..27234)
                     /locus_tag="JN125_001126"
     CDS             complement(26821..27234)
                     /locus_tag="JN125_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310694.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HAY8870976.1"
                     /translation="MKKLAIAGALMLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQ
                     RALVSPEAIGSLIVTKEGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERD
                     GNTIEYDGMTMERVDRPTAECAAALDKAPLPTPLP"
     gene            27421..28626
                     /gene="yedE"
                     /locus_tag="JN125_001127"
     CDS             27421..28626
                     /gene="yedE"
                     /locus_tag="JN125_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HAY8870977.1"
                     /translation="MSWQQFKHAWLIKFWAPIPAVIAAGILSTYYFGITGTFWAVTGE
                     FTRWGGQLLQLFGVHAEEWGYFKIIHLEGSPLTRIDGMMILGMFGGCFAAALWANNVK
                     LRMPRSRIRIMQAIIGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWFFAIATAIGSW
                     FGARFTLLPIFRIPVKMQKVSAASPLTQKPDQARRRFRLGMLVFFGMLGWALLTAMNQ
                     PKLGLAMLFGVGFGLLIERAQICFTSAFRDMWITGRTHMAKAIIIGMAVSAIGIFSYV
                     QLGVEPKIMWAGPNAVIGGLLFGFGIVLAGGCETGWMYRAVEGQVHYWWVGLGNVIGS
                     TILAYYWDDFAPGLATDWDKINLLKTFGPMGGLLVTYLLLFTALMLIIGWEKRFFRRA
                     APQTAKEIA"
     gene            28623..28856
                     /gene="yedF"
                     /locus_tag="JN125_001128"
     CDS             28623..28856
                     /gene="yedF"
                     /locus_tag="JN125_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HAY8870978.1"
                     /translation="MKNIVPDYRLDMVGEPCPYPAVATLEAMPQLKKGEILEVVSDCP
                     QSINNIPLDARNHGYTVRDIQQDGPTIRYLIQK"
     gene            28963..29634
                     /locus_tag="JN125_001129"
     CDS             28963..29634
                     /locus_tag="JN125_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016245363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SOS response-associated peptidase"
                     /protein_id="HAY8870979.1"
                     /translation="MCGRFAQSQTREDYLALLAEDIERDIPYDPEPIGRYNVAPGTKV
                     LLLSERDEHLHLDPVFWGYAPGWWDKPPLINARVETAATSRMFKPLWQHGRAICFADG
                     WFEWKKEGDKKQPFFIYRADGQPIFMAAIGSTPFEHGDEAEGFLIVTAAADQGLVDIH
                     DRRPLVLSPEAAQEWMRQEIGGKEASEIATNGCVPANQFTWHPVSRAVGNVKNQGAEL
                     IQPVC"
     gene            complement(29674..>30052)
                     /locus_tag="JN125_001130"
     CDS             complement(29674..>30052)
                     /locus_tag="JN125_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001458895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY8870980.1"
                     /translation="AAGTISQPGRNVRAKSGLNRSILDQGWYEMRRQLEYKQLWRGGQ
                     VLAVPPAYTSQRCACCGHTAKENRLSQSKFRCQVCGYTANADVNGARNILAAGHAVLA
                     CGEMVQSGRPLKQEPTEMIQATA"
BASE COUNT         7456 a         7748 c         7202 g         7646 t
ORIGIN      
        1 ggctttttgc gctacgtgtc gtgacgcggg tcaggttaga aagacaatcc aggaacgcca
       61 gacgatcgtt ttctgtctgg aaacccagca aatcataatc acaaagctgt tcaagcaagg
      121 tgtcatatgt cggcagcgcg ttgaagattt ccggtgtcgg gaaaggaata tgcagaaaga
      181 aaccaatgcg attattcacc ccacgtttgc gtaattcatg cgcaaagggc aacaggtgat
      241 aatcgtggat ccagataatg tcatcgtctt gcaacagcgg cagtaattta tctgccagta
      301 acgcatttac gcgtagatag ccgtcccagg caggacgctg aaattgcatc agatcgagcc
      361 gataatgaaa agcgggccag agaacggcat tggagaattg gttgtagtat tcgtcaaggt
      421 cctgttcgct gaggttaaaa gaggcccacg taatgttacc ttttttcacc ttttttagcg
      481 gctgatcctc attccctgtt tcaccactcc agccaaacca cagtccgcct gcggctttca
      541 gtgcccccag tatgccaacg gcaaggccac cggcactggc ggcgtgctcg tctggtggtg
      601 caatccggtt agatactacg actaaacgac tcatagtcat cactcctgtt attttctctt
      661 ttttgttgta atgcggtggt tatcatttca agcctgctcc agacatccgg cacacccgcc
      721 agtcgccatg atgcctgagt tgcacctgtg ccaattttta ctgacattcc gcccagtcgg
      781 ttaacgactg cgaagccaga ttcatcggtt aaatcatcgc ccagaaatac gggcgttcgc
      841 ccgataaagg gagcttcctg cataaaagct gcaattgcct cacctttact ggtacctctc
      901 ggtttgatct cgacaacaca ctttccctgc tgtaacgcca tttgtggcca gatctgagta
      961 atacgttgcg ctaatgtcat taatgcgtct tcatgctgcg gagcctgacg ataatgcagc
     1021 gcaaaagcca tccctttcgc ctccagctcc gcgccgggat actgagcgat aactgtatgc
     1081 agttgcacgc taatatcacg cgcaatcgca tccggcagat gaacgatatg cgttttacca
     1141 ttgatgtcac ggcgctccgc cccatgcacg cccgctaacg ggaagcgata aggttttgcc
     1201 agtgcgtcaa gctccaccat tgagcgccct gatatcaatg ccaatgcacc atcacttgcg
     1261 gttgccagta gctgtagtcc ttgcagaata ttgtcaggca cgacgacctg atcgggatgc
     1321 ggtttgattt ccagcgttcc atcgagatca aaaaaccagg catatttcgc ggatagttca
     1381 ggggtttcgg ttaacggttc tgtcacccgg ttctcctact tctcttttct tattgttttg
     1441 cgcagaacgc gctttacaga catgtaagta tagacagtgt gacgggggtc gccatttgca
     1501 acgaagaaca gccaaccgtt atggcggttg gctgtggtgg gaaaaaacgc taaattgttg
     1561 cagaaaaaag catcagacag tgcgtttcgc tttttgcttg taacggtcga agatcaccgc
     1621 tgccagcagg attaagccgc gaaccacgta ctgcgcgaaa ggagaaatat taagcaggtt
     1681 catggcgttt tccacggtgc ctaaaattaa gatacccgcc accacatatg agatttttcc
     1741 gatgcctcct ttcagagaaa cgccacctaa aacgcaggcg gagataacaa tcagctcgta
     1801 accaatcgac gtcattggct gcccactggt catacgtgaa gccagaataa ttccggctat
     1861 cgcagatacc aggccagaga gaacaaagat aataattttg gtgcgaacaa ccggtacacc
     1921 cgccagacgc gcagcctctt cgttcccgcc aatcgccagg gtgttacgac caaaggtggt
     1981 tttattcagc aacaaaccaa agataatcag acacgcgacg gtgagccaga ttggcgcagg
     2041 cagaccgaac cagttagcgt aaccaagggc aaagaagctt tcatcttcga taccgaccgc
     2101 tttaccgtct gaaatgatgt acgccagacc tcgaacaatc tgcatcgttg ccagtgttgt
     2161 gatcagagca tttattttca gtttggcgat aacaaagcca ttgaccaggc cacagagaat
     2221 gccaagcagc aaccccgctg ccacgccaat ccacaggctt tcagtcaggt tgataaccac
     2281 cgccgtggtg acacccgcac aggcaattac ggaggcgaca gaaaggtcaa agtcaccgga
     2341 agcaaggcag aacaacatgc cacacgccac catccccgac atggaaattg ccaggcccaa
     2401 ccctttcata ttaatgaagg tggcaaaatt tgggacaaaa atggcacagg cgataaagag
     2461 caccgcaaac accaccagca tgccgtactg atcccagata cgcccgaagc tgaatgacga
     2521 cttaggtgcg ccagaacccg atgtagaaac agaagacatc atactctcct tactcaggca
     2581 actgcctggc tgactttagg catcgcaagg ctcagtgcct gacgctcatc tgcctgctcg
     2641 tgtaacaatt caccggcgat ttcaccttcc cgcatcacca caatccggtc ggcaacgccg
     2701 aggacttcag gtaagtcgct ggaggcaaac agcaccgcca caccctgcgc cgccagcgca
     2761 taaattacgt tatatatttc gtgcttagca ccaacatcaa tgccgcgcgt aggttcatcc
     2821 agcaaaatga ccttcatctc ttccgataac cagcggccca gaatggcttt ttgctgattt
     2881 ccgcctgaga gattcatgat cagttgctca gcgcccggcg ttttgatgtt gagcgaacga
     2941 atgtgctgat cggcattgtt ttcttcccaa ccgttgttga ttacacaacc gccgagcaca
     3001 tgtttgcgtc tggcactgat gttgatattg tcgcgaacgg agtgcacggg aataatgcct
     3061 tccgctttgc gatcttccgg gcagagcatc atgcctgcgg caatggcgtg gctcggttta
     3121 cgaatatcga tcggctgttg gtcgatataa acctgaccgg cggtgatttg cgtcccgcca
     3181 aacaagcctt tcattaattc gctacgcccc gcccctacca gaccaaacag cccaacaatt
     3241 tcaccactgc gaaccgccag acttattggc gtacgcacgc ctagtgcttt cacagcatca
     3301 agacgcaggc gctcctcgcc ataactacga ggttgccagc cgtagatatc gccaatgtcg
     3361 cgcccgacca tcgcctgcac cagcgcgtcg tggtcaacct gctgcatatc ggtaaaggtt
     3421 ttgacataac gtccatcttt aaagacagtg atggcatcgc tgagggcaaa tatttcttcc
     3481 atacggtgag aaacgtataa gatcacccgc ccctcttttc gcagttcacg aataacgcgg
     3541 aaaagattgt cgatttcgcg ggcagaaagg gagctggttg gctcatcaaa ggcgataatt
     3601 ttagcgttac gcgccagcgc cttggcgatt tcaaccatct gccactgacc aatggagaga
     3661 tatttcagcg gcgtgtccgg gtcaatatcc ataccaagat gtttaagttg taaacccgcc
     3721 tcataattca gcaatgagcg attcacaatg ccgcctttat gcggcagctg gccgagatag
     3781 atgttttccg cgacggtcat ttccggcacg agatgcagtt cctggtaaat aatcgccaca
     3841 cccgcgttaa gtgctgcggt cgtgtcggaa aaggacattt cctgcccatt aatcactaca
     3901 gaacccgtgg ttggcgcata gttgccgctg aggattttta agagagttga ttttcctgcg
     3961 ccattttcac ccatcaacgc atgaacctga ccggcatagc agtcaaaact aatatccgtc
     4021 agcgccttaa cgccgggaaa cgttttaccg atgccgcgaa atgagagata cggggtagac
     4081 tgttgcataa cgtctccgtg aatcactggt cgttcacacc ccctctgcat catgcagagg
     4141 ggaatttttc cggcaaatta cttaccgcct aaaccttttt tctccagttc ttctttaaag
     4201 ttgtcacgcg tgatcagcac cacgtcggta acttcggtaa attttggcgg ttcaacgtct
     4261 tttgctaccc agttgtaaag catttcgctg gatttatagc catgtacgtc cgggcttggc
     4321 agcagggaac cgtagaagcc ggttgcctgt actttagaca gttcgctcac cgcatccaca
     4381 ccgttaatgc caatgccgat aatatcagca gctttaaagc cctgaccttc cgtcgcgcgt
     4441 acgccgccca gcacggtgct gtcgttcata ccgacgatca gccaatgttt aacttcagga
     4501 tgttgaacca gcattgagtt ggcagcgtca aatgcccccg ggatgtcgtt agatttggta
     4561 ggtacctgat aaatttgttt ttccgggaat ccggccgctt tcagcgcatc catagatccc
     4621 gtagtacggc ggcgggcggt atccagttcg ttggcggtaa tcaccatcac cgcgctttct
     4681 ttgacatccc agccacgttt ctgcatctct ttatacagtt cctgaccctg acgttcgcca
     4741 attttagtcg ccgccatcat caccagcgga acggtatcca ttggcttacc tttggcgtta
     4801 acaaactgat catccacggc aatgactttc atatcgtagc cacgcgcttt cgcgacgatg
     4861 gcagagccga gtttggggtc cggagtacaa ataacgaaac cttttgcgcc actggcagcc
     4921 aggctgtcga tcgcgttcaa tgttttttcg ccatccggca cggcaatctt aataacctca
     4981 aaccctaaat ccttcccggc tttatcggca aacttccatt cggtctggaa ccacggctct
     5041 tccggttgct tcaccagaaa accgagcttc aggttctccg ccatagcgga ttgtgacata
     5101 acggctgcca gaccaatggc tgccagggct ttagtaaatt tgtgcatggt tctctccagc
     5161 tttagtgtcg ttttgtgtag ggcaaaaacg aatgacattc gttaaattaa tcggaaaaca
     5221 aagcattacc ttttaactaa aagataagtg accgtgttga catagtttta gcgagaaatt
     5281 aattctccat aggagagcaa tatcacatcg cagaattaca gtgagaacgt gcataaattt
     5341 agcgggaaaa gacataaggg aaagccaatt tgtcagacaa attgtcgaat gcacagcaga
     5401 ttaatccata agattagctt ggaaatcctt gttgtctttg gtacccatgc gggatgtctt
     5461 ctttttaacc agtcaatagg ccacattacc tggcgttgag tttttgaaat ggtgtaataa
     5521 ccgcaactca aagatgtgga aaatgcacgt cattcatttc gccattaatt atcactgtgc
     5581 tcattaatta acagaacacg tataatgaga gccatctcgc aaaaatgaaa aaacgtttta
     5641 taaaatcatc atttcatcaa tgaaatgtaa aaatatataa acttgatgat ttaagcattt
     5701 tcttataccc gttcagacgt tattcttatt tcagatcatc gtcagaattg actccacgat
     5761 cacatttcgg accggcagaa aggaattatt ctgcaaacag taattatggt gttttgattt
     5821 atcttgcacc tctccacttc tggatataag gatattaggt atggcaaccg ctggaatgct
     5881 tctcaaactc aactctcaaa tgaaccgcga gttttacgca tccaatctct accttcacct
     5941 gagtaactgg tgttctgaac agagtctgaa cggcaccgcc actttccttc gcgcccaggc
     6001 acagagtaat gtgacccaaa tgatgcgcat gtttaacttt atgaagagtg tcggcgctac
     6061 ccccatcgtt aaagccattg atgttcccgg tgaaaaactg aactctctgg aagaactgtt
     6121 ccaaaaaacg atggaagaat acgagcaacg ttctagtacg ttggcacagt tagccgatga
     6181 agcgaaagaa ctgaatgatg attcaaccgt caatttcctg cgcgatctgg aaaaagaaca
     6241 gcagcatgat ggtctgttgc tgcaaaccat tcttgatgaa gtgcgcagtg cgaaacttgc
     6301 tggtatgtgc ccagtgcaga ccgaccaaca tgttctgaat gtcgtgtcgc atcagctgca
     6361 ttgatcatac atcggcgcta atgcattgcg ccgatgaagt ttttgagaaa ccgctgcctc
     6421 atctttttga agcagcggtt ttttaatggg attcgccttg tggggtaaac ttgagttcaa
     6481 tcagcgcgat ggctttttgg attgcccgca tggtgaccgg gtctgcggcg gcgggatggt
     6541 tactaaagtc gatattcttc agctgactgg acattttttc acgaacttca acgggcgcga
     6601 ttacatcgag aacatccaga atttgtttga taaccaactg gcaagcaacc acatcagaaa
     6661 ccagttcctg atcggcattc agcggctggg acatcgtaaa ctcctgatag cattttgaaa
     6721 gccgttatag tagcggcttc acatcttcag cgatagtcac atccaccgtc atcaggacac
     6781 aaaaaaacct gccggagcag gttttttgtt atcggaacat attgcctggc ggtacgtctt
     6841 tgaacgtctt gcaatagtta ttgaacatac ttttcaggat tttgcgcagt ttcatcgcgg
     6901 cactccgacc atttgttata catgtgttat tttctttgcg cttataatat gacagccatc
     6961 acaaaaatca atctttatgt gatgcaaatc acacaaatac ccccttaatg ttataaaaat
     7021 gataatcaaa aaacagcccc cccatttctg acacctacag atggcaagaa atagcgcctg
     7081 ccaggcgtct tttccggtca ttgtcgcagc gctgtaacgc gtaaaatagt gctttctttt
     7141 actcttctgg ctggaccatg agacttctga ttctgactct ttcattaata acgctggcgg
     7201 ggtgtacggt tactcgccaa gcccatgtga gcgaagttga cgcggcaaca ggtattgtac
     7261 ggttggttta tgaccaggct tttttgcagc atgcccatac cgatcgttat gtcagtcgcg
     7321 ggatcgccga tcgcgcatgc cagcaggaag gctataccca cgcgatcccc tttggtcagc
     7381 cagtaggcaa ctgtagcctt tttgcgggtt ccttatgttt gaatacggaa ttcactttgt
     7441 catatcagtg ccatcattcc gccttccctg tctttctcta aatattttaa tcagcgaggg
     7501 gatcttcgct gattaaagaa atagcggtaa tgcgttttat tcccattcgt atttttaata
     7561 attgaagttt atattttacc ttttgcaaat aataaaataa caaattatag tgacgccaca
     7621 gcaacaaata taacctttgt ggagcactat catgctgaaa ccagaaatga ttgaaaaact
     7681 taatgagcag atgaacctgg aactgtactc ttcactgctt tatcagcaaa tgagcgcctg
     7741 gtgcagctat cataccttcg aaggtgctgc cgcgttcctg cgccgtcacg cccaggaaga
     7801 gatgacgcat atgcagcatc tgtttgatta cctgactgat accggcaatt taccgcgtat
     7861 taataccgtt gaatctccgt ttgctgaata ttcctcactt gatgaattat tccaggaaac
     7921 ctataaacac gaacaattaa tcacccagaa aattaacgaa ctggctcatg ctgcaatgac
     7981 caatcaggac tacccaacat ttaatttcct gcaatggtat gtttctgagc agcatgaaga
     8041 agagaaactg ttcaaatcga ttattgataa attaagcctg gcaggcaaaa gcggcgaagg
     8101 tctgtatttt atcgacaaag aactctctac cctcgacaca caaaactaat gctctccggc
     8161 ggcaggttta ctgccgccgt ttcaaatcag tgacggcaaa tcttactctg atcggtcgaa
     8221 aaaccgtctt tcgaaggtat aaatttgcct tttgctgcca gaaacgctac cagctctccc
     8281 gctgtcatcc cttctgccga gcaggtgtga aaacgtgcct gttcaccaaa acgcgcttta
     8341 attgctgctt ccagactggc atgcgtatat tgctcgcctg attcaatcat catatttaac
     8401 acttcatgac cgtgaataga gtccatcgtt cctcctcaaa aaaagcctag cgtagcgatt
     8461 gccgcttatg aagactttgc gccagagcag aactgaatgc tttttattgt acatttatat
     8521 ttacaccata tgtaacgtcg gtttgacgaa gcagccgtta tgccttaacc tgcgccgcag
     8581 atatcactca taaagatcgt caggacagaa gaaagcgtga aaaacagaac tctgggaagt
     8641 gtttttatcg tggcgggaac cacaattggc gcaggcatgc tggcaatgcc gctggctgcg
     8701 gcaggtgttg gttttagcgt cacgttaatc ttgttgattg ggctttgggc gttgatgtgc
     8761 tacacggcgc tattactgct ggaggtgtac cagcatgttc cggcagatac cggtctgggc
     8821 acgctggcaa aacgctatct gggacgctac ggtcaatggc tgacgggctt cagtatgatg
     8881 ttcttaatgt atgctctgac tgcggcatac atcagcggtg ccggtgaatt gttggcctcc
     8941 agcatcagcg actggacagg tatttcaatg tcggcaaccg ctggcgtgct gttgttcact
     9001 tttgttgccg gtggcgtggt ttgtgttgga acatcgctgg tcgatttatt taaccgtttt
     9061 ctgttcagcg ccaaaattat ttttctggtg gtgatgctgg tattgctgct accgcatatt
     9121 cacaaagtga atcttttaac cctgccgttg caacaggggc tggctctgtc agcaatcccg
     9181 gtgattttta cctcatttgg ttttcacggt agcgtgccga gtattgtcag ctatatggat
     9241 ggcaacgttc gtaagctacg cagggtgttt ataaccggta gtgcgatccc cctggtggca
     9301 tatattttct ggcaggtggc aacgcttggc agcattgatt caacaacctt tatgggattg
     9361 ctggctaatc atgctggatt aaacgggctg ttacaggcgt tacgcgaaat ggtggcctct
     9421 ccgcatgttg agctggcagt gcatttattt gctgatttag ccctcgccac gtcatttctc
     9481 ggcgttgcgt taggcttatt tgattatctg gctgatttat ttcagcgttc aaataccgtt
     9541 ggtggacggt tgcaaactgg tgcaattacc tttctgccgc cgttggcgtt tgcactgttt
     9601 tatccacgag gatttgtgat ggcgctgggt tacgccggtg tggcgctggc ggtactggca
     9661 ttgattatcc cttcgctgtt gacctggcaa agcagaaagc acaatcctca ggcgggttac
     9721 cgggtcaaag gtggtcgtcc ggcgctggtg gtggtgtttc tctgtggtat tgctgtgatt
     9781 ggcgtgcaat ttttgattgc ggcagggttg ttaccagaag tggggtgatc agatagcctc
     9841 aaattcctta ttgggtgcca gaattaacgc tgacacccaa tttggcctct taatgcaggc
     9901 agcactgctt aaatttctta ccactaccgc acgggcaagg atcgttacgc cccggtttct
     9961 cttctgcttt gatcggttgc tgaacagctt tttcctgcgg atgcgccatc cagtacgcat
    10021 gtagatcaag cgccgccagt cgaatggcat ctacgcgctc ttcaaacgct tctggcgaca
    10081 tcttttctac ccgctcgaag ttttcctcag taccgtgcag cgcaatcgcc tccagcgctg
    10141 gttttaacga atcgggcaac gttgaccagt cagaaagtgc cacgccccgc atatagccaa
    10201 agcaccactc ctcaacaatc gtcagctcgc tgccatcaac ttctcgcaag ccgaataacg
    10261 gctcaaactg ctccgggaat tcgttcagac gcgctgcggt atcggccata tgttgaaaag
    10321 ccaggttcat aaagcgcgtc atctctttct ctgacgccca gcgcggcaca tagtcagccc
    10381 caccccacac ggcaaccagc cactgttccg gttcaatctc ttgcggagaa ctcaacaccg
    10441 ccgtcaataa atcgtccagc tccgccacat caaggatggc gtggttagtg ttgtatttgg
    10501 tcagaatatc gtccagccat tccaactcac tttcgtttaa cggtcccgtt ttcatacgct
    10561 tttccttgtg gatctcaact cgccagcacc tatcttacat gccggtccgt atcagagata
    10621 ctttttgagt ggctttgccg gtgattaaaa attaaggagg gtgtaacgac aagttgcagg
    10681 cacaaaaaaa ccacccgaag gtggtttcac gacactgctt attgctttga ttttattctt
    10741 atctttccca tggtacccgg agcgggactt gaacccgcac agcgcgaacg ccgagggatt
    10801 ttaaatccct tgtgtctacc gattccacca tccgggctcg ggaagaaagt ggaggcgcgt
    10861 tccggagtcg aaccggacta gacggatttg caatccgcta cataaccgct ttgttaacgc
    10921 gccaaattct tcaggccttt cagccagaca tccgcttgac gccgatgtct tttaaactgg
    10981 agcgggaaac gagactcgaa ctcgcgaccc cgaccttggc aaggtcgtgc tctaccaact
    11041 gagctattcc cgcattcatt aagcaatcag ttaatcactt gattttatta tcgcctggca
    11101 atcagtgccg ccgttcgatg cgttgcattc tacttacctg gcgcgatgag tcaacgatat
    11161 ttttcaccac ttttgatcgt ttgctgaaaa ttacgccgaa acgatcactg atcaagcaaa
    11221 tctgcacgcg cagcgctcaa atattgcaac attgaccaca gagtcagtac cgcagccaca
    11281 aagaaaagtg caataccggc gtactcaacc caaatgttcg gacgccacag cagccaggcc
    11341 aacgccacca tctgggcagt ggttttcact ttcccaatcc aggagacagc cacgctactg
    11401 cgtttaccca actccgccat ccattcgcgt agcgcagaaa taataatttc acgggcgatc
    11461 atcgttgccg ccggtagggt cacccaccag ctgtgataat gctcggttac cagcaccatg
    11521 gcgatagcca cgagaacttt atctgctaca gggtcaagga aagcaccaaa ccgggtactc
    11581 tggttccagc ggcgtgccag aaaaccatcg aaccagtcag tcaccgccgc gacgcagaaa
    11641 atgagcgcgg cggcaaacgg cgaccaggtg acaggcagat aaaagaccaa tacaaagaat
    11701 gggataagga tgacacggaa cagtgtaagc aacgtaggga tattaaattg cataatgacg
    11761 ggtaactatc tgttgtcagt aagattaccc ctatgttgct acagagacat caatgtttca
    11821 acgaccagaa gatcttttct gccagacctt gcgaaatacc cggcactttt gcaatttcct
    11881 cgacgctggc gttacgtaaa ccttgcaaac cgcccatata tttcaacaac atttgccgac
    11941 gttttggccc gacgccttca atggtttcca gggaactggt atttttgacc ttcgcccgtt
    12001 ttttacggtg cccgccaatc gcgtgatcat gtgattcatc gcgaatatgc tggataacat
    12061 gcagcgcggg tgaatctggc ggcaaactaa atccctcacc ttccggctca aagaacagcg
    12121 tttccagtcc agccttacga tctgctcctt tggcaacgcc aagtagcagc ggatgatttt
    12181 tatcccatga gacatccagt tcggcgaaga catttttcgc ctgcgcaagc tggcctttgc
    12241 cgccgtcgat aaggatcaca tccgggatct tactgtcgtc aatggcttta ccataacgcc
    12301 gacgcagcac ctgattcatc gccgcataat catcgcccgg cgtgatgcct gtaatgttat
    12361 agcgccgata ctccgcacgc agcgggccgt tagcatcaaa caccacacag gaagcgacgg
    12421 tttgttcgcc catggtatgg ctgatgtcaa agcactccat ccgcttcact tccggcaatt
    12481 tcaacacgct ggcaagcgcg gtcagtcgct ggtgaacggt agattgctgc gaaagtttgc
    12541 tgattaaggc cgtcgccgca ttggtgcgcg cgagtttcag ataacgcgcc ctatcgccgc
    12601 gaggtttggt ttgaacatta atcttgcgtc ccgccagttc tgaaagggaa tcggcgagca
    12661 gcgttttatc gctaagatta aaatcgagca ggatctcacc cggtaaggtg cgcatctggc
    12721 tgccttgtaa atagaactga cctacgaagg tttctaccac ctcgctcagt tccgtaccgc
    12781 caggcacttt cgggaaatag ctgcggctgc cgagcacttt gccctgacga atgaacaata
    12841 cgtggacaca agccatgccc gcatcgaacg ccacaccaat aacgtcaagg tcgttgccgg
    12901 tattggaaac aaactgtttt tcggtgacgc gtcgcaccgc ctgaatttgg tcgcgaatac
    12961 gtgccgcttc ttcaaactcc agattctgac tggcagtttc catacggcta atgagttgcg
    13021 taagcacctg atcatctttg ccagacaaaa acaggcgcac atactcgacc tgctgagcgt
    13081 attcttcttc actcaccagt ccttcaacgc acggtcccag acagcgccct atctgatatt
    13141 gcagacacgg acgcgagcga ttgcgataaa cactattttc gcactggcga atggggaaaa
    13201 tcttttgcag tagcgccaga gtttcacgta cggcatagcc attcgggaac gggccgaaat
    13261 attcaccttt ggcatgcttc gcaccacgat gcatcgccag acgcgggtgg gtatcgccac
    13321 tcaggaagat aaaaggataa gatttatcat cgcgtagcaa aacgttgtaa cgcggctgat
    13381 agagtttgat gtagttgtgt tccagcaaca gcgcttcggt ttctgtatga gtaaccgtta
    13441 catcaatttg ctgaatctgg gcgaccagcg cttcggtttt gcgcgaagcg aggttgctac
    13501 ggaaatagct ggaaagccgt tttttcaggt ctttcgcttt gcctacatag ataaccgtac
    13561 caccagcatc gtacatgcga taaacgcctg gctggctggt tacggttttt aaaaacgctt
    13621 ttgcgtcaaa ctgatcactc actgacttga taatgtctcc gcattacaca gaccatggcg
    13681 aattgccagg tgagtcagct caacatcgcc atgaatgttt agtttactga acatacgata
    13741 gcggtagctg ttcaccgttt tcggactgag attgagctgt tctgagatct cattgacctt
    13801 ctggcccttg gtgatcatca gcataatctg caattcacgt tcagacaaac tggcaaatgg
    13861 gctttctgtt ttttctggtt cgatctggct taacgccatt tgttgagcga tgtcagaagc
    13921 aatgtaacgc tgccctgaat agacagaacg aatcgcactc acgacttcct gcggagccgc
    13981 gcctttgctg aggtagcccg cagcaccggc ctgcatgact ttcgctggta aagggttttc
    14041 tgtatgaacg gtaagcatga tgattttgac atcagctgtg gaacgcgcga ttttacgcgt
    14101 cgcctcaaga ccgccaatgc ccggcatact catgtccatt agcaccacgt caacggcatt
    14161 tgtccggcac cacttaacgg cgtcttcacc gcacgatgcc tcaccgacga cttttatacc
    14221 ctttatatct tccagaatgc gtcgtatccc tgcgcgcacc agttcgtggt catcaacaag
    14281 tagaacgttg atcaaagaaa tatctccaga aatagggata acgctactga tagttagtca
    14341 ttcgtatatt agcggttttt attgcaactt tgaaacgtta aaaatggtgg gtattcgatt
    14401 tttctctcgt ttttgtcaat tcgattgtcc acagttatgg tcacgcccgt caccaacggc
    14461 ttaccagatc gtttcacagt aagccctacg atgaaatgtg acaaaaattg actttattca
    14521 gcaaaaatga aaatcagccc gctgaatatg taacattaat taacccgaac aatacgggca
    14581 aaaacattca tgataaaaat atttattggt cattatatta acgtatttta tagcactgcc
    14641 gatatcacgc tcaaaaaaca accactgcta tttttagcaa agcttatggt atactccgcc
    14701 gccttaacat ttttcaccgc aaattttcat tgcaacatga cgaggaaaat aaatgagtac
    14761 gcctgatttt tctactgccg agaataatca agaactggca aatgaagtct cctgcctgaa
    14821 agcgatgctg acgctgatgc tgcaggcgat gggacaagct gacgcgggcc gcgtgatgtt
    14881 aaagatggaa aaacagcttg cgctgatcga agacgaaacc caggctgcag tattttccaa
    14941 aacggttaag caaattaaac aagcctaccg tcagtaatat aaaaccggct gagagcgtgc
    15001 ctttcagccg gtttttgcat ctggcacgca gaaagaaaag cgatcaaatt aagccagtag
    15061 cggccgcgta acaggccacc tgggtcttat ttggtgcatt gatttttttc tgcatgtttt
    15121 tctgatggaa attgaccgta ttctcagaga ttgacaaaat catcgctatc tctgctgatg
    15181 tcttcccttc cgccgtccat ttcagaattt ctttttcgcg cttgctgaaa ttcatctctg
    15241 gcgtcatcac tatttcatca tttaaacgca tcagagccat cagactttcg cgcaccagta
    15301 actgcatttt taattgcagt tcatcactaa gaatgggtat ttcgcgcgtg ctgcaacggg
    15361 aaaaggacaa aaagcccagc gcccgatttg gcagcattaa atactgagtg acaccgcggc
    15421 gtaaaccatg tgcgtgcgcg gcttcccata atggctgtgc ttcgctgaat aagtcatcat
    15481 tccacattaa atggccctga ctaaagtttt cagggttcag cacaggatca attgcgagaa
    15541 aattttttgc ctgataataa ctaacccacg actcagggta attggtgtag aaagccactt
    15601 taggtcgcgt gaatggtacc gggtggcgaa cacataacga atagtaatcg tactccagct
    15661 gctgagcctg aagctctatt tcatggtaga cctcttctgc ggcctccatc ctctgaaaac
    15721 gcaacagcat cgtgcgacgc cagctgaaaa aatccgtatc ctgcatagta aaccgcaacg
    15781 cccctgagag tgagtatcat ttataatgat aattcaaact atcacataaa taagatttat
    15841 atataattta tattattcag gcaatgaatt acttttgcaa gccatcgcat tctcttatgt
    15901 tattaatgag ttatgctgat ttgttaagca gttttatcac gcttgaaatg gcgtcccgcc
    15961 ccgacaggtg aatcgtcggg gctgattttt tcttattatt gcagcagaaa cttctcgagg
    16021 aactgtcggg tgcgaggctg ctggggatcg gcaaataacg cttttgctgc cccctgctcg
    16081 actatccgcc ccaggtccat aaaaatcgcc cggtccgcaa catcccgggc aaagctcatt
    16141 tcgtgcgtca caatcaccat cgtgcgcttt tcctgcgcca gctggcggat tgtgttcagg
    16201 acttcgccca ccagctctgg atccagcgct gacgttggct cgtcaaacaa aatcacctca
    16261 ggacgcattg ccagcgcacg cgcaatcgct acacgctgct gttgaccgcc agacaaacga
    16321 cgtggatagc tggtttcttt accggccagc ccaactttcg ccagcagctc gcgagcgcgc
    16381 gccgtggcct cttctttcgg ttcgcctttg acgatcaccg gcccttcaat aatgttttcc
    16441 agcaccgtac gatgcggaaa caaattaaag ttctggaaga caaacccgac gtgctgacgc
    16501 aactggcgaa tcagcgattt ttgctgactt aatgaacgtg cagtatcaat agtgatatcg
    16561 ccaacggtga tcgttcccgc ttccggttgt tccagcagat ttatgctgcg tagcaacgtg
    16621 gttttgccgg aaccactcgg accgataatt gccaccactt cgccaggctt tacctcgagg
    16681 tcgataccgt gtagcaccgt ctgaccgtgg aattttttca ccaggttctt aacttcaatg
    16741 gcactcattt gggttctctc tcctggcgat taagttgatt ctcaaaatgg ttctgcaacg
    16801 tcgataacac agtcgccatg atccagtaga tgagcgaagc cgccaggtac atggtgaaca
    16861 cctccagcgt gcgcgaggta atcaactgcg cctgacggaa cagctccggc acctggattg
    16921 tcgcggccag cgacgtatct tttaccagac tgataaagct gttcgacagc ggcggcaaca
    16981 ccacccgcgc cgcctgtggc aaaatcgcgc gacgcatggt ctgccacggc gtcataccaa
    17041 tactgacagc ggcttcccac tgacctttat caatagaaga aatggcggcg cgcagcgttt
    17101 cggcggcata ggcggcagtg ttcagcgaca gaccaatcat tgctgacgga atgggatcta
    17161 attcgatacc aaactgcggc aggccgtaat agatcataaa cagttgtgcg atgagcggcg
    17221 taccacgaaa aatagagata taaaaacgcg ccagccagcg cacgggccag attggcgaca
    17281 ggcgcatcag cgcgagaata aacccgagta gtaagccaaa aaacatgccg ccgatactga
    17341 gttgcagggt atacccagcc cctttcaaca ggaacggcaa ggaatcaata accagttgta
    17401 tactttcttg catgagcgtt cctggagcta aacgtgggga tgataggcga acagcgcagg
    17461 cgcgccgccg gtatgaataa acagaatcgg cccttcatct ttgaagcgtt tctgactgat
    17521 accgtcaatc agccccgcca tcgcttttcc ggtatacaca ggatcaagca gaatgccttc
    17581 cagacgcgcc agcaatttca ctgcttccat gccttcgtcg ttcggcacgc cgtagccagg
    17641 tgcaaaatag tcatcccaga gtaaaatttc cgctgatgcg gtcagctcca gttctttcgc
    17701 aatcgcctgt tgtaggttaa ccactttcgg caattgatcg gcaacggaac gcgacacggt
    17761 cacgccaatc agttcgcttt caggcatcag gtgttccagc ccaacagcca atccggcgtg
    17821 agttccggca ctgcccgatg cgaccaccac cgacgaaata ttaaccgccc cttcacactg
    17881 ttgcgcgatt tccagcgcac tctccacata acccagcgcg cccagagcat tagaaccgcc
    17941 aaccggaatg acatacgggc gaaagccttg tgcttcgact cgcgtcgcca gctcttccag
    18001 ttgggcattg ggatcggtca gtgcgtcgca catttcaatc tgggtattga acagattcag
    18061 caacaaacga ttgccgttgg ttaaatagtt ttctgcggtt gtgccaatag gattttccag
    18121 cagcgccacg cagtgcaggc cgagtttcgc cgcaactgcg gcagtctgcc gcacatggtt
    18181 agactggatc gcgccggcac taatcagcgt atcggcacct tcgcgcaggg catctgccgc
    18241 gagaaattcc agcttacgta atttattgcc gcccattgcc atgggtgtga cgtcatcccg
    18301 tttgatgaaa atttcccgtc caagataatc agaaaagcgc ggcagatatt cgagcggcgt
    18361 tggcgcgccg ataaactcca gccgtggaaa acgggttaaa ttatgcagtg gcataatagc
    18421 ctccgatgtg tgttgttgtg attttcttat tatgcacgct gaaaacgcgt aaataaaaaa
    18481 ggcgctagtg aaagcgccct tttttgtcat tatgctgatt atttggtcac atcagcacca
    18541 aaccattttt cggaaagggc ttgcagagtg ccatcttttt gcatttccgc aattgcatcg
    18601 ttcactgctt tcagcaggtc ttcatttcct ttacgcagcg ccacgccaga ctcctgacgg
    18661 gagaatgctt caccggttac tgccagcgta tcgttggttt tcttcaccag atccagcgcc
    18721 gccagacggt caacgaggat cgcatcgata cggcctacgc gcagatcctg atatttggtc
    18781 gggtcatcat cataggtacg cacatcgacg ccctgaacat tctgccgcag ccactcttca
    18841 tagttggtgc ccagaccgac acccactttt ttgcctttca gatcagcagc cgttttaatg
    18901 gtgccttcgt tacctttttt caccagcgcc ggaataccag aaatggtgta cggggtagag
    18961 aaatcgtatt ttttcttgcg ctcatcagaa atggtgacct gattaatcac cacatcaata
    19021 cgtttagagt ccagcgacgc tagcataccg tcccatttgg tcggttttag tgacgcctca
    19081 acgccaagat gttttgccag ctgttgggca aattccactt caaaaccggt taatttgccg
    19141 tcatccccct gaaaactgaa cggcggataa gttccttcca gccctaccag tagcgtaccg
    19201 cgctctttga ctttattaag cagaccttca tctgcaaaac ttttaacgct catgcccgca
    19261 accagcgcca cggccatcac acccatcaat gcctgacgtc ccagatgtgc taatttcata
    19321 ttcaccccga atgttgttat gtctgtttgc agtgtagagc cattgtttgt aaacacaaaa
    19381 acaactccgc tacatcttat tcttatttaa tatatatcag aagcaggcag gctggaggat
    19441 ttctgcacaa gtccggtaca cgtttgacgc tgatagtgtt gatacttccg taatgcgatg
    19501 cggtaattgt tggtgctggt ggtgggcagc cacggggcga ggatttcatc aaggaaaccg
    19561 tcctgcagct gatcgaggga aatattttgc tcatgtagat gattccccaa acggcgcaaa
    19621 cgaacgacat attcacgcac cgtacctggg ctcatttcag tttgctcaaa aagaaattgc
    19681 ttaaagccga taatatcgaa aaaatcactc tgcgttttgc aatgtaaatc accgcaaaat
    19741 cggcacaatg ccgcccatga ctgttgttcc acttgccagc cattttcatc aagcagcgtg
    19801 tccaggcggg aaatctcgat tttattcact attttgccgt cgcgaactaa ggtaatgcga
    19861 tcgagtaatt tacggcaatg cgcgcaatgg gcctggctgt gtttaaagtc tttaagatag
    19921 cggcttaatg gccgtctttt caggtgctgc accatcatta agaactcctg gtagtcaaag
    19981 ttaaagtgcg gcatttactg acgttataac ttacccagtt tagtgcttaa ccgtttaatg
    20041 gcctggctgt gtaactgact gacccgcgat tccccgacct ccagcaccgc gccaatctct
    20101 ttgagattca gctcttccta gtaatagagg gttaatacca gtttttcgcg ctccggcaac
    20161 gtttcgatag cttccatcac ccgctggcgc agattactgt ccagcagttg ttgtagcggg
    20221 ttttctcgct gatgatcatc agtaaccagt tcgatgctat cgccgtgctc ttcgcgccac
    20281 tcatcgtagg agaaaagctg gctgttattg gtgtcgagca acatttggcg ataatcggca
    20341 atatcgatcc ctaaacgttc cgctacctca gtttccgtgg cgttgcggcc aagttcctgc
    20401 tccagttacc ctattgcctg tgccacttca cgcgcgttgc gtcgcacgct gcgcggcacc
    20461 cagtcacggc tgcgaagttc atccagcata gcgccacgga tacgctgcac tgcgtaagtt
    20521 gtaaatgccg ttccttgtag ggcgtcatag cgttcgacgg cattaagtaa cccaatgccg
    20581 cccgcctgta gcagatcgtc aagttccacg ctcgcgggca gtcgaacctg caggcgcaat
    20641 gcttcgtgac gcaccagcgg gacataacgc tgccacagcg agtgtttatc cattacacct
    20701 tcagcggtat agagtgaatt cacgataaac agccctgcgt tatatgagtt atcggcatga
    20761 ttatccgttt ctgcagggtt tttaatcgga cgattagtgg gtgaaatgag gggttatttg
    20821 ggggttaccg gtaaattcca tgcagaaaaa accccgccgg tggcggggaa gcacgttgct
    20881 gacaaattgc gctttatgtt gccggatgcg gcgtaaacgc cttatccggc ctacaaaaat
    20941 gtgcaaattc aataaattgc aattcacctt gtagacctga taagtgcagc gcatcaggca
    21001 atttggcgtt gccgtcagtc tcagttaatc aggttacgac gattaaccct gcagcagaga
    21061 cagaacctgc tgcggtacct ggttggcttt tgccagcacg gagttaccgg cctgctggat
    21121 gatctgcgct ttcgacatgt tggacacttc ggtcgcatag tcggcgtcct gaatacggga
    21181 ctgcgcttca gacaggttgg tagtggtgtt gttcaggttg gtgactgcag aatccagacg
    21241 gttctgaata gcacccaggg atgaacggaa tttgtcgatg gagctgatag cttcatccag
    21301 ggcagccaga ggatctttgg ttgcagtgcc tgcactggtg gtttcagtgg tcagtttgcc
    21361 tgtagagtta acataagcct gtgccccaac agtagctgca aatttaccag ttgcacctgc
    21421 gccatttgaa gctacagtta ctgtaccggt atccttatcg acgttgtagt tgatagtgta
    21481 agatgcggtt gtggtgagct ctttgtctgc atcagtatag gtgtcattcg aattaccagc
    21541 accattagta ttcgcaccac cgaaggacgc cgttgcagac tgaatacctg tattatactt
    21601 aattgtcgca ccagtaactg ctgtgttagc cgttgcagca ctctgcactg tgctcagtac
    21661 agtatcagcg cttacagttt tggtgtaggt tacgccagaa gttgccgctg caccaaagtt
    21721 ataagttgtg ccagacaact ggatagaacc agttgtcgct aaggtactac cgctagcaaa
    21781 cagatcggac aatttcgctg aagatgcaat gccggcgttg tttgtagata ggttaccagt
    21841 agcgtctagg tacgcggctt taccaccgat ggtcacatcg ccattagcat ctacatcaaa
    21901 cttcacatca ccagtactac gagtataaac acctgatgca gtagtgccag ccgctggttt
    21961 cagagtattc gcaaagttaa caacatcgcc atctgcaact gttgcttgag tggtgaagtt
    22021 ccctttagcc gcatcataag tatagatcgc agcactcgag ccagtagtag taactgtatc
    22081 tccggttttc aggcgagaca gtgcatcgct agcgctgagt actgtattgt ttgtggtcac
    22141 agcataagga cctgttcccg ttgcaccagc agcggtcaga tcgctgactg tagcagcttt
    22201 gttcgcaata gtgcctttgc cattcacgtt aaaaccattc agccccagcg tatctgagtc
    22261 aattttcttc agatcaatcg tgatagtctg gccgtcattc gcaccaacct gaattttcat
    22321 tgaaccgtct ttcgccagtg cgttcacgcc gttgaactgg gtctggccag atacgcggtc
    22381 aatttcgtcc agacgggatt tgatttcgtc ctgaatggag tccagatccg aatcggagtt
    22441 agtcccggta gaagcctgaa ccgtcagttc acgaatacgc tgtaagttgt tgttgatttc
    22501 ggacagcgcg ccttcagtgg tctgcgcaac ggagataccg tcgttggcgt tacgggccgc
    22561 ctgagtcagg cctttaatat tagaagtaaa acggttagca atcgcctgac ctgcggcgtc
    22621 atccttcgcg ctgttaatac gcaagccaga agacagacgc tcgatagaac tcgacagcgc
    22681 agactggttc ttgttgatat tattttgagt gatcagcgag aggctgttgg tattaatgac
    22741 ttgtgccatg attcgttatc ctatattgca agtcattgat tacgtattgg gtttccaccc
    22801 gtcggctcaa tcgccgtcaa ccctgttatc gtctgtcgta aaacaacctt tagaattttt
    22861 ttcacaaaca gccatttttt gttagtcgcc gaaatactct tttctctgcc ccttattccc
    22921 gctattaaaa aaaacaatta aacgtaaact ttgcgcaatt caggccgata accccggtat
    22981 tcgttttacg tgtcgaaaga taaaaggaaa tcgcatggca agtatttcat cgctgggagt
    23041 cgggtcaggt ctggatttaa gttcaatcct tgatagcctc accgccgcgc aaaaagcgac
    23101 gctaacccct atttcaaatc agcaatcgtc gtttaccgct aaacttagcg cctacggtac
    23161 gctgaaaagc gcgctgacga ctttccagac cgccaatact gcattgtcta aagccgatct
    23221 tttttccgcc accagcacta ccagcagcac caccgcgttc agtgccacca ctgcgggtaa
    23281 cgccatcgcc gggaaataca ccatcagcgt cacccatctg gcgcaggcgc aaaccctgac
    23341 cacgcgcacc accagagatg atacgaaaac ggcgatcgcc accagcgaca gcaaactcac
    23401 cattcaacaa ggcggcgaca aagatccgat taccattgat atcagcgcgg ctaactcatc
    23461 gttaagcggg atccgtgatg ctatcaacaa cgcaaaagcg ggcgtaagtg cgagcatcat
    23521 taacgtgggt aacggtgaat atcgtctgtc agtcacatca aatgacaccg gccttgataa
    23581 tgcgatgaca ctctcggtca gcggtgatga tgcgctacaa agttttatgg gctatgacgc
    23641 cagtgccagc agcaacggta tggaggtctc ggtcgccgcc cagaatgcgc agctgacggt
    23701 caacaacgtc gccattgaga acagcagcaa caccatcagc gacgcgctgg aaaacatcac
    23761 cctgaacctg cacgatgtca ccacgggcaa ccagacgcta accatcactc aggacacctc
    23821 caaagcgcaa acggcgatta aagactgggt gaatgcctat aactcgttaa tagatacctt
    23881 cagtagcctg accaaataca ccgccgtaga tgcggaagct gatagccaga gttctagcaa
    23941 tggcgcactg ctcggcgact ccacgctgcg gacgattcag acgcagttga agtcgatgct
    24001 gagtaatacc gtcagttctt ccagctataa aacgctggcg cagattggta tcacgaccga
    24061 tcccagcgat ggcaaactgg aactggatgc cgacaaactc accgctgcac tgaaaaaaga
    24121 tgccagcggc gtaggtgcat tgattgttgg cgatggtaaa aaaaccggca tcacgaccac
    24181 catcggcagc aacctgacca gttggctttc gacaacgggc attattaaag ccgctaccga
    24241 tggcgttagt aagaccctga ataagttaac taaagactac aacgccgcca gcgatcgcat
    24301 tgatgcgcag gtcgcgcgct acaaaaaaca atttacccaa ctggacgttt taatgacctc
    24361 gttaaacagc accagcagct acttaacgca gcagttcgaa aacaacagta attccaagta
    24421 atcattattc atcgggagat aggtcatgta cgcggcaaaa ggcacccagg cctatgcaca
    24481 aattggcgtc gaaagcgccg taatgagcgc cagccagcag cagctggtca ccatgctatt
    24541 tgatggagtg ctgagcgcac tggttagagc gcgcctgttt atgcaggaca acaatcagca
    24601 aggcaaaggc gtctctttgt caaaagcgat caacatcatt gagaacggac tgcgggtgag
    24661 tcttgatgaa gagagcaaag acgaactaac ccaaaacttg attgctcttt atagctatat
    24721 ggtcaggcgc ttgctgcaag ccaatttacg caacgatgtc tccgcagtcg aagaagtgga
    24781 agcattaatg cgcaatattg ccgatgcctg gaaagagtcg ttactctccc cttctttgat
    24841 tcaggaccca gtctgatgaa ccatgcaccg catttgtatt tcgcctggca acaactcgtc
    24901 gaaaaaagcc agctcatgtt acgcctggca acggaagaac aatgggacga actcatcgcc
    24961 agcgaaatgg cgtatgtgaa tgcggtgcag gagtatagca cacctgactg aagaggttgc
    25021 cccgtccacc acgatgcagg agcagctccg cccgatgctg cgcctgattc ccgacaacga
    25081 aagcaaggta aagcagttat tacagattcg tatggatgaa ctggcgaaac tggtcggtca
    25141 gtcatcggtg caaaaatcgg tgttaagtgc ctatggcgat cagggcggct ttgtgctggc
    25201 tccgcaagat aacttctcgt gaatcttaac gagctaatgg ttcgcgaata atccgattac
    25261 ggctacgctt ctaatgttcc ccttgaatgg agtcgaagaa tgcgtaatcc cacgctgtta
    25321 caatgttttc actggtatta cccggaaggc ggtaagctct ggcctgaact ggccgagcgc
    25381 gccgacggtt ttaatgatat tggtatcaat atggtctggt tgccgcccgc ctataaaggc
    25441 gcatcgggcg ggtattcggt cggctacgac tcctatgatt tatttgattt aggcgagttt
    25501 gatcagaaag gcagcatccc tactaaatat ggcgataaag tacaattgct ggccgccatt
    25561 gacgccctga aacgtaatga cattgcggtg ctgttggacg tggtagtcaa ccacaaaatg
    25621 ggcgcggatg aaaaagaagc tattcgcgtg cagcgtgtaa atgctgacga ccgtacgcaa
    25681 attgatgaag aaatcattga gtgcgaaggc tggacgcgtt acaccttccc cgcccgtgcc
    25741 gggcaatact cacagtttat ctgggatttc aaatgtttta gcggtatcga ccatatcgaa
    25801 aaccctgatg aagatggcat atttaaaatt gttaacgact acaccggcga aggctggaac
    25861 gatcaggttg atgatgaatt aggtaatttc gattatctga tgggcgagaa tatcgatttt
    25921 cgcaatcatg ccgtgacgga agagattaaa tactgggcgc gctgggtgat ggaacaaacg
    25981 caatgcgacg gttttcgtct tgatgcggtc aaacatattc cggcgtggtt ttataaagag
    26041 tggatcgaac acgtacagga agttgcgcca aagccgctgt ttattgtggc ggagtactgg
    26101 tcgcatgaag tcgataaact gcaaacgtat attgatcagg tggaaggcaa aaccatgctg
    26161 ttcgatgcgc cgctgcagat gaaattccat gaagcatcgc gcatggggcg cgactacgac
    26221 atgacgcaga ttttcacggg tacattagtg gaagccgatc ctttccacgc cgtgacgctc
    26281 gttgccaatc acgacaccca accgttgcaa gccctcgaag cgccggtcga accgtggttt
    26341 aaaccgctgg cgtatgcctt aattttgttg cgggaaaatg gcgttccttc ggtattctat
    26401 ccggacctct acggtgcgca ttacgaagat gtcggtggtg acgggcaaac ctatccgata
    26461 gatatgccaa taatcgaaca gcttgatgag ttaattctcg cccgtcagcg tttcgcccac
    26521 ggtgtacaga cgttattttt cgaccatccg aactgcattg cctttagccg cagtggcacc
    26581 gacgaatatc ccggctgcgt ggtggtcatg tcgaacgggg atgatggcga aaaaaccatt
    26641 catctgggag agaattacgg caataaaacc tggcgtgatt ttctggggaa ccggcaagag
    26701 agcgtaataa ccgacgaaca cggcgaagca accttctttt gcaacggcgg cagcgtcagc
    26761 gtgtgggtta tcgaagaggt gatttaaatt catccccggc ggcaagccgg ggagatttca
    26821 ttacggcagt ggcgtcggta acggcgcttt atccagcgcg gcggcacact ctgccgtcgg
    26881 gcgatccaca cgctccatcg tcataccatc gtactcaatg gtgttaccgt cacgctcaac
    26941 ctcgtacagc tcacgtttta cggtaacgtt agtgagatca tcagacatca atgtcaactt
    27001 acccggcaca gcaatcaccc gctgccactg acggcaatcc agagtatcac cctctttagt
    27061 gacaatcagg ctgcctatcg cttccggact gaccagcgca cgttgcggcc ctttggtctg
    27121 ccagtagccc gccagccagt ccggcgcggg ggttttcacg acattgttat agttttcgac
    27181 ttcggcacag cccgccagca acatgagcgc gcctgcaatt gcgagttttt tcatcattcg
    27241 tcctgcatga gaagaaaaga ggattgtggc attaaagccc tgatgtcgcc agcctttcca
    27301 ggttcagaga gaaatttgat ctaactatta tttttgtgaa ttattacccc gaaaataaat
    27361 ttgcatgatg tatgattcgc gactcttgtt tcaaaccttc tgagttcaga ggctacattc
    27421 atgtcatggc agcaattcaa acacgcctgg ttgattaaat tctgggcccc catccctgcg
    27481 gtcatcgcgg cgggtattct ctccacttac tattttggca ttactggcac cttttgggct
    27541 gtcacgggtg aatttacccg ttggggcggc cagctcctgc agctgtttgg cgtccatgct
    27601 gaagagtggg gttattttaa aattatccat ctggaaggat cgccattaac ccgcatcgac
    27661 gggatgatga tcctcggcat gtttggcggc tgctttgccg cagcgctgtg ggccaacaat
    27721 gtcaaactgc gcatgccacg cagccgtatc cgcattatgc aggccattat tggcggtatt
    27781 atcgctggtt ttggcgcgcg tctggcaatg ggctgtaacc tggcggcgtt ctttaccggt
    27841 attcctcagt tctcgctgca tgcctggttc tttgccatcg ccactgccat tggttcatgg
    27901 tttggcgcac gctttaccct gctgcccatc ttccgtattc ccgtgaaaat gcagaaagtt
    27961 tctgccgcct caccgctgac gcaaaaaccg gatcaggcgc ggcgtcgttt tcgtctcggg
    28021 atgctggtct ttttcggtat gctgggctgg gcgctgctca cggcgatgaa ccaaccaaaa
    28081 ctggggctgg caatgctgtt tggcgtcggc tttggtttac tgattgaacg tgcgcaaatc
    28141 tgctttactt cggcgttccg cgatatgtgg atcaccggac gtacccatat ggcgaaagca
    28201 atcattatcg gtatggcggt gagtgccatc gggatcttca gttacgtaca gttaggcgtt
    28261 gaacccaaaa tcatgtgggc gggaccaaac gcggtaattg gtggtttact gtttggtttt
    28321 ggcatcgtgc tggcaggcgg ctgcgaaacc ggctggatgt accgcgcggt agaaggccag
    28381 gtgcactact ggtgggtcgg tctgggcaat gtgatcggct cgacgattct ggcgtattac
    28441 tgggatgatt tcgctccggg gctggccacc gactgggaca aaatcaacct gctgaaaacc
    28501 tttggcccga tgggtggcct gctggtgaca tatttgctgt tgtttactgc gctgatgttg
    28561 attatcggct gggaaaaacg cttcttccgc cgtgcggcac cgcagactgc taaggagatc
    28621 gcatgaaaaa tatcgttcct gattaccgcc ttgatatggt gggtgaaccc tgcccttatc
    28681 cggcagtcgc aacccttgag gcgatgccgc agttaaaaaa aggggaaatc ctggaagtgg
    28741 tgagcgactg tccacagtcg atcaataata ttccactgga tgcgcgtaat cacggctata
    28801 cggtgcggga tattcagcaa gacgggccga ccattcgtta tttaattcag aagtaatccc
    28861 tcattcccgc tgtggcccac agcgggaaca tcgttgcctc tgacacatag attttacccg
    28921 ccccctctcc tattcttttc agtatgatct caggaggttt ctatgtgtgg acgctttgcc
    28981 caatcccaaa cgcgtgaaga ttaccttgcg cttctcgcgg aagatattga acgcgatatt
    29041 ccctacgatc ccgaacccat tggcagatac aacgtcgcgc cgggaaccaa agttcttctg
    29101 ctcagtgaac gtgatgaaca ccttcatctg gatccggttt tctggggata tgctcccgga
    29161 tggtgggata aaccgccgct gattaacgcc cgcgtagaaa ctgccgcaac cagtcgcatg
    29221 tttaaaccgc tctggcaaca tggtcgggca atctgttttg ccgatggctg gtttgagtgg
    29281 aaaaaagaag gcgacaaaaa acagcctttt tttatctatc gtgctgatgg acaacctatt
    29341 tttatggccg cgataggtag cacaccattt gagcatggtg acgaagccga aggattttta
    29401 attgtcactg ctgcagcaga ccagggtctg gtagacattc atgaccgccg cccgctggtt
    29461 ctgtcgccag aagctgcaca ggaatggatg cggcaagaga ttggcggtaa agaagcatca
    29521 gaaattgcta ccaacggctg tgtgccagca aaccagttca cctggcaccc ggtatcgcgc
    29581 gcggtaggta atgtcaaaaa ccagggcgcg gagttaattc aacctgtttg ttgacatcct
    29641 ccacgccctg aaggacgagg ctccctgcta cgttcaggct gtcgcctgaa tcatttcggt
    29701 gggttcctgc ttcaacgggc ggcctgactg caccatctct ccacaggcaa gaacggcgtg
    29761 ccccgccgct aaaatgttac gagcgccatt tacatcggcg ttcgctgtat atccacatac
    29821 ctggcatctg aatttacttt gtgacaggcg gttttctttc gctgtatgac cacagcacgc
    29881 gcaacgctgg cttgtgtacg ctggcggaac agcaagcacc tgaccgccac gccagagctg
    29941 cttgtactca agctggcggc gcatttcata ccagccctga tccagtatcg aacggtttaa
    30001 acctgatttt gcccggacat tgcgccccgg ctggctgatc gtacccgctg ct
//
LOCUS       DADMHM010000029        29705 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.030, whole genome shotgun sequence.
ACCESSION   DADMHM010000029 DADMHM010000000
VERSION     DADMHM010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 29705)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29705)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29705
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.030"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..362
                     /gene="sxy"
                     /locus_tag="JN125_001131"
     CDS             <1..362
                     /gene="sxy"
                     /locus_tag="JN125_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CRP-S regulon transcriptional coactivator Sxy"
                     /protein_id="HAY8870981.1"
                     /translation="NQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILG
                     EVGIKDVRALRILGAKMCWLRLRQQNSLVTEKILFMLEGAIIGIHEAALPVARRQELA
                     EWADSLTPKQEFPAELE"
     gene            complement(325..2487)
                     /gene="yccS"
                     /locus_tag="JN125_001132"
     CDS             complement(325..2487)
                     /gene="yccS"
                     /locus_tag="JN125_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309071.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01666 family membrane protein"
                     /protein_id="HAY8870982.1"
                     /translation="MAFMLSPLLKRYTWNSAWLYYARIFIALCGTTAFPWWLGDVKLT
                     IPLTLGMVAAALTDLDDRLAGRLRNLIITLFCFFIASASVELLFPWPWLFAIGLTLST
                     SGFILLGGLGQRYATIAFGALLIAIYTMLGTSLYEHWYQQPMYLLAGAVWYNVLTLIG
                     HLLFPVRPLQDNLARCYEQLARYLELKSRMFDPDIEDESQAPLYDLALANGLLMATLN
                     QTKLSLLTRLRGDRGQRGTRRTLHYYFVAQDIHERASSSHIQYQTLREHFRHSDVLFR
                     FQRLMSMQGQACQQLSRCILLRQPYQHDPHFERAFTHIDDALERMRDNGAPADLLKTL
                     GFLLNNLRAIDAQLATIESEQAQALPHNNDENELADDSPHGLSDIWLRLSRHFTPESA
                     LFRHAVRMSLVLCFGYAIIQITGMHHGFWILLTSLFVCQPNYNATRHRLKLRIIGTLV
                     GIAIGIPVLWFVPSLEGQLVLLVITGVLFFAFRNVQYAHATMFITLLVLLCFNLLGEG
                     FEVALPRVIDTLIGCAIAWAAVSYIWPDWQFRNLPRMLERATEANCRYLDAILEQYHQ
                     GRDNRLAYRIARRDAHNRDAELASVVSNMSSEPNVTPQIREAAFRLLCLNHTFTSYIS
                     ALGAHREQLTNPEILAFLDDAVCYVDDALHHQPADEERVNEALASLKQRMQQLEPRAD
                     SKEPLVVQQVGLLIALLPEIGRLQRQITQVPQETPVSA"
     gene            complement(2497..2943)
                     /locus_tag="JN125_001133"
     CDS             complement(2497..2943)
                     /locus_tag="JN125_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YccF domain-containing protein"
                     /protein_id="HAY8870983.1"
                     /translation="MRTVLNILNFVLGGFATTLGWLLATLVSIVLIFTLPLTRSCWEI
                     TKLSLVPYGNEAIHVDELNPAGKNVLLNTGGTVLNIFWLIFFGWWLCLMHIATGIAQC
                     ISIIGIPVGIANFKIAAIALWPVGRRVVSVETAQAAREANARRRFE"
     gene            3066..5120
                     /gene="helD"
                     /locus_tag="JN125_001134"
     CDS             3066..5120
                     /gene="helD"
                     /locus_tag="JN125_001134"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase IV"
                     /protein_id="HAY8870984.1"
                     /translation="MELKATTLGKRLVQHPYDRAVILNAGIKVSGDRHEYLIPFNQLL
                     AIHCKRGLVWGELEFVLPDEKVVRLHGTEWGETQRFYHHLDAHWRRWSGEMSEIASGV
                     LRQQLDLIATRTGENKWLTREQTSGVQQQIRQALSALPLPVNRLEEFDNCREAWRKCQ
                     AWLKDIESARLQHNQAYTEAMLTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGA
                     GSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRERLHTEDITARTFH
                     ALALHIIQQGSKKVPIVSKLENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQ
                     WSVPEGNFWDDEKLQRRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLM
                     APLLKAWKGALKAENAVDFSGLIHQAIVILEKGRFISPWKHILVDEFQDISPQRAALL
                     AALRKQNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENFGEGERCDLDTTYRFNSRI
                     GKVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDESQLDALLDKLSGYAKPEERILIL
                     ARYHHMRPASLEKAATRWPKLQIDFMTIHASKGQQADYVIIVGLQEGSDGFPAAARES
                     IMEEALLPPVEDFPDAEERRLMYVALTRARHRVWALFNKENPSPFVEILKNLDVPVAR
                     KP"
     gene            complement(5152..5610)
                     /gene="mgsA"
                     /locus_tag="JN125_001135"
     CDS             complement(5152..5610)
                     /gene="mgsA"
                     /locus_tag="JN125_001135"
                     /EC_number="4.2.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415483.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal synthase"
                     /protein_id="HAY8870985.1"
                     /translation="MELTTRTLPARKHIALVAHDHCKQMLMSWVERHQPLLEQHVLYA
                     TGTTGNLISRATGMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDV
                     KALLRLATVWNIPVATNVATADFIIQSPHFNDAVDILIPDYQRYLADRLK"
     gene            complement(5706..6368)
                     /locus_tag="JN125_001136"
     CDS             complement(5706..6368)
                     /locus_tag="JN125_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2057 family protein"
                     /protein_id="HAY8870986.1"
                     /translation="MKTGIVTTLIALCLPVSVFATTLRLSTDVDLLVLDGKKVSSSLL
                     RGADSIELDNGPHQLVFRVEKTIHLSNSEERLYISPPLVVSFNTQLINQVNFRLPRLE
                     NEREANHFDAAPRLELLDGDATPIPVKLDILAITSTAKTIDYEVEVERYNKSAKRASL
                     PQFATMMADDSTLLSGVSELDAIPPQSQVLTEQRLKYWFKLADPQTRNTFLQWAEKQP
                     SS"
     gene            6541..6954
                     /locus_tag="JN125_001137"
     CDS             6541..6954
                     /locus_tag="JN125_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HAY8870987.1"
                     /translation="MKETDIAGILTSTHTIALVGASDKPDRPSYRVMKYLLDQGYHVI
                     PVSPKVAGKTLLGQQGYGTLADVPEKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWMQL
                     GVINEQAAVLARDAGLNVVMDRCPAIEIPRLGLAK"
     gene            complement(6999..7316)
                     /gene="hspQ"
                     /locus_tag="JN125_001138"
     CDS             complement(6999..7316)
                     /gene="hspQ"
                     /locus_tag="JN125_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock protein HspQ"
                     /protein_id="HAY8870988.1"
                     /translation="MIASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVND
                     ELRAAPWYHVVMEDDNGLPVHTYLAEAQLSSELQDEHPEQPSMDELAQTIRKQLQAPR
                     LRN"
     gene            complement(7374..8564)
                     /gene="rlmI"
                     /locus_tag="JN125_001139"
     CDS             complement(7374..8564)
                     /gene="rlmI"
                     /locus_tag="JN125_001139"
                     /EC_number="2.1.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415487.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (cytosine(1962)-C(5))-methyltransferase
                     RlmI"
                     /protein_id="HAY8870989.1"
                     /translation="MSVRLVLAKGREKSLLRRHPWVFSGTVARMEGKASLGETIDIVD
                     HQGKWLARGAYSPASQIRARVWTFDPSESIDIAFFSRRLQQAQKWRDWLAQKDGLDSY
                     RLIAGESDGLPGITIDRFGNFLVLQLLSAGAEYQRAALVSALQTLYPECAIYDRSDVA
                     VRKKEGMELTLGLVTGELPPALLPIEEHGMKLLVDIQHGHKTGYYLDQRDSRLATRRY
                     VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFV
                     RDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGI
                     LLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQAADHPVIATYPEGLYLKGFA
                     CRVM"
     gene            8659..8937
                     /gene="yccX"
                     /locus_tag="JN125_001140"
     CDS             8659..8937
                     /gene="yccX"
                     /locus_tag="JN125_001140"
                     /EC_number="3.6.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HAY8870990.1"
                     /translation="MSKVCIIAWVYGRVQGVGFRYTTQYEAKRLGLTGYAKNLDDGSV
                     EVVACGEEGQVEKLMQWLKSGSPRSARVERVLSEPHHPSGELTDFRIR"
     gene            complement(8934..9263)
                     /gene="tusE"
                     /locus_tag="JN125_001141"
     CDS             complement(8934..9263)
                     /gene="tusE"
                     /locus_tag="JN125_001141"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309080.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusE"
                     /protein_id="HAY8870991.1"
                     /translation="MLIFEGKEIETDTEGYLKESSQWSEPLAVVIAENEGISLSPEHW
                     EVVRFVRDFYLEFNTSPAIRMLVKAMANKFGEEKGNSRYLYRLFPKGPAKQATKIAGL
                     PKPVKCI"
     gene            complement(9354..10013)
                     /gene="yccA"
                     /locus_tag="JN125_001142"
     CDS             complement(9354..10013)
                     /gene="yccA"
                     /locus_tag="JN125_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000375124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease modulator YccA"
                     /protein_id="HAY8870992.1"
                     /translation="MDRIVSSSHDRTSLLSTHKVLRNTYFLLSLTLAFSAITATASTV
                     LMLPSPGLILTLVGMYGLMFLTYKTANKPTGIISAFAFTGFLGYILGPILNTYLSAGM
                     GDVIAMALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPAL
                     HLAISAVFILISSGAILFETSNIVHGGETNYIRATVSLYVSLYNIFVSLLSILGFASR
                     D"
     gene            complement(10220..10307)
                     /locus_tag="JN125_001143"
     tRNA            complement(10220..10307)
                     /locus_tag="JN125_001143"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(10271..10273),aa:Ser,seq:tga)
     gene            10734..11852
                     /gene="hyaA"
                     /locus_tag="JN125_001144"
     CDS             10734..11852
                     /gene="hyaA"
                     /locus_tag="JN125_001144"
                     /EC_number="1.12.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 1 small subunit"
                     /protein_id="HAY8870993.1"
                     /translation="MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAW
                     ALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAE
                     EVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTC
                     ASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVD
                     RMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACS
                     STRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGV
                     VAAAVGVHAVASAVDQRRRHNQQPTETEHQPGNEDKQA"
     gene            11849..13642
                     /gene="hyaB"
                     /locus_tag="JN125_001145"
     CDS             11849..13642
                     /gene="hyaB"
                     /locus_tag="JN125_001145"
                     /EC_number="1.12.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase large subunit"
                     /protein_id="HAY8870994.1"
                     /translation="MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVIT
                     NAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDN
                     ANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSP
                     GYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVK
                     IHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMI
                     PDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMLGGAVINGDFNNV
                     LPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQ
                     ERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLG
                     RILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAP
                     RGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEI
                     LRTLHSFDPCLACSTHVLGDDGSELISVQVR"
     gene            13661..14368
                     /gene="hyaC"
                     /locus_tag="JN125_001146"
     CDS             13661..14368
                     /gene="hyaC"
                     /locus_tag="JN125_001146"
                     /EC_number="1.12.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase b-type cytochrome subunit"
                     /protein_id="HAY8870995.1"
                     /translation="MQQKSDNVVSHYVFEAPVRIWHWLTVLCMAVLMVTGYFIGKPLP
                     SVSGEATYLFYMGYIRLIHFSAGMVFTVVLLMRIYWAFVGNRYSRELFIVPVWRKSWW
                     QGVWYEIRWYLFLAKRPSANIGHNPIAQAAMFGYFLMSVFMIITGFALYSEHSQYAIF
                     APFRYVVEFFYWTGGNSMDIHSWHRLGMWLIGAFVIGHVYMALREDIMSDDTVISTMV
                     NGYRSHKFGKISNKECS"
     gene            14365..14952
                     /locus_tag="JN125_001147"
     CDS             14365..14952
                     /locus_tag="JN125_001147"
                     /EC_number="3.4.23.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 1 maturation protease"
                     /protein_id="HAY8870996.1"
                     /translation="MSEQRVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDG
                     GTQGLNLLGYVESASHLLILDAIDYGLEPGTLRTYAGERIPAYLSAKKMSLHQNSFSE
                     VLALADIRGHLPAHIALVGLQPAMLDDYGGSLSELAREQLLAAEQSALAQLAAWGSVP
                     QPANESRCLNYDCLSMENYEGVRLRQYRMTQEEQG"
     gene            14949..15347
                     /gene="hyaE"
                     /locus_tag="JN125_001148"
     CDS             14949..15347
                     /gene="hyaE"
                     /locus_tag="JN125_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase-1 operon protein HyaE"
                     /protein_id="HAY8870997.1"
                     /translation="MSNDTPFDALWQRMLARGWTPVSESRLDDWLTQAPDGVVLLSSD
                     PKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGVFRFPTTLVFTGGN
                     YRGVLNGIHPWAELINLMRGLVEPQQERAS"
     gene            15344..16201
                     /locus_tag="JN125_001149"
     CDS             15344..16201
                     /locus_tag="JN125_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein"
                     /protein_id="HAY8870998.1"
                     /translation="MSETFFHLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCA
                     HSPQVIALLNELQHQLSERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQA
                     DDSKSEIQEAIFCGLWRVRRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPP
                     IDGLMNGLPLAHELLAHVRNPDAQPHSINLTQLPISEADRLFLSRLCGPGNIQIRTIG
                     YGESYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDSAQRLSEVC
                     QWLAEAAPT"
     gene            16335..17879
                     /gene="appC"
                     /locus_tag="JN125_001150"
     CDS             16335..17879
                     /gene="appC"
                     /locus_tag="JN125_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706901.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bd-II oxidase subunit 1"
                     /protein_id="HAY8870999.1"
                     /translation="MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAIMETIYVVTG
                     KTIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTNWAFYSNYVGDIFGAPLAMEALM
                     AFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNLSALWILNANGWMQYPTGAHFD
                     IDTLRMEMTSFSELVFNPVSQVKFVHTVMAGYVTGAMFIMAISAWYLLRGRERDVALR
                     SFAIGSVFGTLAIIGTLQLGDSSAYEVAQVQPVKLAAMEGEWQTEPAPAPFHVVAWPE
                     QDQERNAFAIKIPALLGILATHSLDKPVPGLKNLMAETYPRLQRGRMAWLLMQEISQG
                     NREPHVLQAFRELEGDLGYGMLLSRYAPDMNHVTAAQYQAAMRGAIPQVAPVFWSFRI
                     MVGCGSLLLLVMLIALVQTLRGKIDQHRWVLKMALWSLPLPWIAIEAGWFMTEFGRQP
                     WAIQDILPTYSAHSALTTGQLAFSLIMIVGLYTLFLIAEVYLMQKYARLGPSAMQSEQ
                     PTQQQG"
     gene            17891..19027
                     /gene="appB"
                     /locus_tag="JN125_001151"
     CDS             17891..19027
                     /gene="appB"
                     /locus_tag="JN125_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HAY8871000.1"
                     /translation="MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDD
                     ERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPL
                     AFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGS
                     FWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLA
                     GYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPL
                     LTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSSSSQL
                     TLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLRRNENELY"
     gene            19040..19132
                     /gene="cbdX"
                     /locus_tag="JN125_001152"
     CDS             19040..19132
                     /gene="cbdX"
                     /locus_tag="JN125_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bd-II oxidase subunit CbdX"
                     /protein_id="HAY8871001.1"
                     /translation="MWYLLWFVGILLMCSLSTLVLVWLDPRLKS"
     gene            19212..20510
                     /locus_tag="JN125_001153"
     CDS             19212..20510
                     /locus_tag="JN125_001153"
                     /EC_number="3.1.3.2"
                     /EC_number="3.1.3.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AppA family phytase/histidine-type acid
                     phosphatase"
                     /protein_id="HAY8871002.1"
                     /translation="MKAILIPFLSLLIPLTSQSAFAQSEPELKLESVVIVSRHGVRAP
                     TKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYFGHYQRQRLVADGLLAKKGCPQP
                     GQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDPLFNPLKTGVCQLDNA
                     NVTDAILSKAGGSIADFTGHRQTAFRELERVLNFPQSNLCLKREKQDESCSLTQALPS
                     ELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSHQWNTLLSLHNAQF
                     YLLQRTPEVARSRATPLLDLIMAALTPHPPQKQAYGVTLPTSVLFIAGHDTNLANLGG
                     ALELNWTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQMRDKTPLSLNT
                     PPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEARIPACSL"
     gene            complement(20625..22805)
                     /gene="etk"
                     /locus_tag="JN125_001154"
     CDS             complement(20625..22805)
                     /gene="etk"
                     /locus_tag="JN125_001154"
                     /EC_number="2.7.10.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein kinase"
                     /protein_id="HAY8871003.1"
                     /translation="MTTKNMNTPPGSTQENEIDLLRLVGELWDHRKFIISVTALFTLI
                     AVAYSLLSTPIYQADTLVQVEQKQGNAILSGLSDMIPNSSPESAPEIQLLQSRMILGK
                     TIAELNLRDIVEQKYFPIVGRGWARLTKEKPGELAISWMHIPQLNGQDQQLTLTVGEN
                     GHYTLEGEEFTVNGMVGQRLEKDGVALTIADIKAKPGTQFVLSQPTELEAINALQETF
                     TVSERSKESGMLELTMTGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQL
                     PEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLY
                     KKDHPTYRALLEKRQTLEQERKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNR
                     QQELSISKSSAIGNVRIIDPAVTQPQPVKPKKALNVVLGFILGLFISVGAVLARAMLR
                     RGVEAPEQLEEHGISVYATIPMSEWLDKRTRLRKKNLFSNQQRHRTKNIPFLAVDNPA
                     DSAVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI
                     DADLRRGYSHNLFTVSNEHGLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSEL
                     LMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSVGTSLLVARFGLNTAKEVS
                     LSMQRLEQAGVNIKGAILNGVIKRASTAYSYGYNYYGYSYSEKE"
     gene            complement(22825..23271)
                     /gene="etp"
                     /locus_tag="JN125_001155"
                     /gene_synonym="yccY"
     CDS             complement(22825..23271)
                     /gene="etp"
                     /locus_tag="JN125_001155"
                     /gene_synonym="yccY"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309165.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-tyrosine-phosphatase Etp"
                     /protein_id="HAY8871004.1"
                     /translation="MAQLKFNSILVVCTGNICRSPIGERLLRKRLPGVKVKSAGVHGL
                     VKHPADATAADVAANHGVSLEGHAGRKLTAEMARNYDLILAMESEHIAQVTAIAPEVR
                     GKTMLFGQWLEQKEIPDPYRKSQDAFEHVYGMLERASQEWAKRLSR"
     gene            complement(23259..24398)
                     /locus_tag="JN125_001156"
     CDS             complement(23259..24398)
                     /locus_tag="JN125_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide export protein"
                     /protein_id="HAY8871005.1"
                     /translation="MKKNIFKFSILTLAVLSLTACTLVPGQNLSTSNKDVIELPDNQY
                     DLDKMVNIYPVTPGLIDQLRAKPIMSQANPELEQQIANYEYRIGIGDVLMVTVWDHPE
                     LTTPAGQYRSASDTGNWVNADGAIFYPYIGRLKVAGKTLTQVRNEITARLDSVIESPQ
                     VDVSVAAFRSQKAYVTGEVSKSGQQPITNIPLTIMDAINAAGGLTADADWRNVVLTQN
                     GVKTKVNLYALMQRGDLRQNKLLHPGDILFIPRNDDLKVFVMGEVGKQSTLKMDRSGM
                     TLAEALGNAEGMNQDVADATGIFVIRATQNKQNGKIANIYQLNAKDASAMILGTEFQL
                     EPYDIVYVTTAPLARWNRVISLLVPTISGVHDLTETSRWIQTWPN"
     gene            complement(24444..26540)
                     /locus_tag="JN125_001157"
     CDS             complement(24444..26540)
                     /locus_tag="JN125_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbH domain-containing protein"
                     /protein_id="HAY8871006.1"
                     /translation="MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQ
                     MPNARIAPEGEFSVNYRDNDQYRFYSTSVALFPWLEGTIRYTDVRTRKYSQWEDFSGD
                     QSYKDKSFDFKLRLWEEGYWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMA
                     WGYAGNAGNITNPFCRVSDKYCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPL
                     RLKLEYDGNNYQNDFAGKLPQASHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTN
                     FNDLRPALRDTPKPAYQPAPESEGLQYTTVANQLTALKYNAGFEAPEIQLRDKTLYMS
                     GQQYKYRDSREAVDRANRILVNNLPQGVEKISVTQKREHMAMVTTETDVASLRKQLAG
                     TAPGQSEQLQQQRVEAEDLSAFGRGYRIREDRFSYSFNPTLSQSLGGPEDFYMFQLGL
                     MPSARYWFTDHLLLDGGIFTNIYNNYDKFKSSLLPADSTLPRVRTHIRDYVRNDVYLN
                     NLQANYFADLGNGFYGQVYGGYLETMYAGVGSELLYRPLDASWALGVDVNYVKQRDWD
                     NMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVGQYLAKDKGATIDVAKRFDSGVAVG
                     VWAAISNVSKDDYGEGGFSKGFYISIPFDLMTIGPNRNRAVVSWTPLTRDGGQMLSRK
                     YQLYPMTAEREVPVGQ"
     gene            complement(26540..27286)
                     /locus_tag="JN125_001158"
     CDS             complement(26540..27286)
                     /locus_tag="JN125_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis GfcC family protein"
                     /protein_id="HAY8871007.1"
                     /translation="MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPGEQQTLSVGPMEN
                     VVQLVTQPQLRDRLWWPGALLTDSAAKAKALKDYQHVMAQLASWEAEANDDVAATIKS
                     VRQQLLNLNITGRLPVKLDPDFVRVDENSNPPLVGDYTLYTVQRPVTITLLGAVSGAG
                     QLPWQAGRSVTDYLQDHPRLAGADKNNVMVITPEGETVVAPVALWNKRHVEPPPGSQL
                     WLGFSAHVLPEKYADLNDQIVSVLTQRVPD"
     gene            complement(27283..27927)
                     /locus_tag="JN125_001159"
     CDS             complement(27283..27927)
                     /locus_tag="JN125_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbF family lipoprotein"
                     /protein_id="HAY8871008.1"
                     /translation="MRPLILSIFALFLAGCTHSQQSMVDTFRASLFDNQDITVADQQI
                     QALPYSTMYLRLNEGQRIFVVLGYIEQEQSKWLSQDNAMLVTHNGRLLKTVKLNNNLL
                     EVTNSGQDPLRNALAIKDGSRWTRDILWSEDNHFRSATLSSTFSFAGLETLNIAGRNV
                     LCNVWQEEVTSTRPEKQWQNTFWADSATGQVRQSRQMLGAGVIPVEMTFLKPAP"
     gene            complement(28034..28339)
                     /locus_tag="JN125_001160"
     CDS             complement(28034..28339)
                     /locus_tag="JN125_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415507.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine-rich inner membrane protein GfcA"
                     /protein_id="HAY8871009.1"
                     /translation="MKHKLSAILMAFMLTTPAAFAAPEATNGTEATTGTTGTTTTTTG
                     ATTTATTTGGVAAGAVGTATVVGVATAVGVATLAVVAANDSGDGGSHNTSTTTSTTR"
     gene            complement(28781..28993)
                     /gene="cspH"
                     /locus_tag="JN125_001161"
     CDS             complement(28781..28993)
                     /gene="cspH"
                     /locus_tag="JN125_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock-like protein CspH"
                     /protein_id="HAY8871010.1"
                     /translation="MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEV
                     LIPGLRVEFCRVNGLRGPTAANVYLS"
     gene            29279..29491
                     /gene="cspG"
                     /locus_tag="JN125_001162"
     CDS             29279..29491
                     /gene="cspG"
                     /locus_tag="JN125_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock protein CspG"
                     /protein_id="HAY8871011.1"
                     /translation="MSNKMTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRT
                     LNENQKVEFSIEQGQRGPAAANVVTL"
     gene            29502..29690
                     /locus_tag="JN125_001163"
     CDS             29502..29690
                     /locus_tag="JN125_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HAY8871012.1"
                     /translation="MTQHLHFRCPCCHGSQYRTSAFDVTERNPLGAKCIFCKSTMITF
                     DNVALQIRTDHAPLDFTK"
BASE COUNT         7226 a         7532 c         7791 g         7156 t
ORIGIN      
        1 gaaatcaact gaagctggtg cgtctgtcga aatattctct cgatgcagcg ctgaaagaga
       61 aaagcacgcg caatacccgg gaaagactga aagatttgcc caatatgtct tttcatctgg
      121 aagcgattct cggggaggtg gggattaagg atgtacgggc gttacgtata cttggggcaa
      181 aaatgtgttg gttgcgactg cggcagcaaa acagtctggt gacagaaaag attctgttta
      241 tgcttgaagg tgccattatc ggcattcatg aagctgcgct cccggtggca cgccgccagg
      301 agcttgcaga atgggctgac tcacttacgc cgaaacagga gtttcctgcg gaacttgagt
      361 aatctggcgt tgcagacgac caatctcagg cagtaatgca atcaataatc caacttgttg
      421 tacgaccaga ggttctttgc tgtctgcccg tggttcaagt tgctgcatcc gctgtttcag
      481 gctagctaat gcctcattga cgcgttcttc atcagcaggt tgatgatgta acgcgtcatc
      541 aacatagcaa actgcgtcat caagaaacgc cagaatttca ggattagtta actgctcccg
      601 gtgagcaccg agggctgaga tatagctggt aaacgtatgg ttaaggcaca gcaaccgaaa
      661 cgcggcttcg cgaatttgcg gggtaacgtt cggctcgctg gacatatttg ataccaccga
      721 cgccagctca gcatcacggt tgtgtgcatc gcggcgggca atacgatacg ccagacggtt
      781 atcacgcccc tgatggtatt gctccagtat ggcatcgaga taccgacagt tggcctctgt
      841 ggcgcgttcg agcatgcgcg gcagattgcg aaactgccag tcaggccaga tgtagctcac
      901 tgccgcccac gcaatggcac aaccaatcag cgtatcgatt acgcgaggta acgctacttc
      961 aaaaccttca cccagtaagt taaaacacag tagcaccaaa agtgtgatga acatcgttgc
     1021 atgagcgtat tgcacgttac ggaaggcaaa aaagagcacg ccggtaataa ccagcagcac
     1081 cagctgccct tccagtgatg gcacaaacca cagcacagga atgccaatgg cgatacctac
     1141 cagcgtacca ataatcctta acttcaggcg gtggcgcgtg gcgttatagt ttggctggca
     1201 gacaaacaaa cttgtcagca agatccaaaa cccgtgatgc attccggtta tttgaatgat
     1261 ggcgtagccg aagcacaaca ccagcgacat tcttaccgca tgacggaaga gggcggattc
     1321 cggcgtgaag tgacggctaa gacgcagcca gatatcactc aacccgtgcg ggctgtcatc
     1381 agcgagctca ttttcgtcat tattatgggg tagtgcctgg gcctgttctg attcaattgt
     1441 tgccagttgg gcatcaatgg cgcgtaaatt gttcagcaaa aatcccagtg ttttgagtaa
     1501 atcggcgggt gcgccgttat cgcgcatccg ctccagcgca tcatcaatat gcgtaaaagc
     1561 gcgctcaaaa tgcggatcat gttgataagg ctgacgcaac aaaatacagc gtgacagttg
     1621 ctggcacgcc tggccctgca tcgacatcag ccgctgaaaa cggaacagca cgtcgctgtg
     1681 gcgaaaatgt tcacgcaatg tttgatactg aatatgagaa gagctggcac gctcgtgaat
     1741 atcctgtgcg acaaagtaat aatgcagcgt gcgacgcgtt ccccgttgac cacgatcgcc
     1801 acgtaagcgg gtcagcagcg agagtttcgt ctgattcaat gtcgccatca gcagaccgtt
     1861 ggcgagagcc aaatcgtaca gcggtgcctg gctttcatct tcaatatcag gatcaaacat
     1921 gcgcgacttg agctcaagat aacgcgccag ttgttcatag caacgcgcca ggttgtcctg
     1981 cagcgggcgg accgggaaca gcagatgacc aataagtgtc aggacgttgt accagacggc
     2041 accggccagc agatacatcg gctgctgata ccagtgctca tacagtgatg ttcccaacat
     2101 agtgtaaatg gcgatcagca atgcaccgaa ggcaattgtt gcatagcgtt gacccagacc
     2161 gccgagcaaa atgaagccgc tggtagagag cgttaagcca atcgcaaata gccagggcca
     2221 gggaaacagc aattctactg aggccgaggc gataaaaaag cagaacagcg taatgatgag
     2281 gttacgcaaa cgtcccgcca gtcggtcatc gagatcggtc agcgccgctg ccaccatccc
     2341 cagcgttagc ggaatcgtca gttttacatc acccagccac cacggaaacg ctgtggttcc
     2401 acaaagcgca ataaaaatac gcgcgtaata cagccaggcg ctgttccagg tatagcgttt
     2461 gagcaaagga cttagcataa aggccatatt agtggattat tcaaaacgac gacgtgcatt
     2521 ggcttcacgc gcagcttgcg ctgtttctac cgataccacg cgacgaccaa ccggccatag
     2581 tgcaatagcg gcaattttaa agttcgcaat gccgacagga atgccaatga ttgaaataca
     2641 ttgtgcgatg cccgttgcaa tgtgcatcag gcataaccac cagccaaaga aaatcagcca
     2701 gaaaatattc aataccgtac cgccagtatt cagcagcaca tttttgccag ccgggttcag
     2761 ttcatcgaca tgaatagctt cattgccata aggcaccaga gacagtttag tgatctccca
     2821 gcaggatcgt gtcagcggta aggtaaaaat cagcacaata ctgaccagag tcgccaacag
     2881 ccagcccaga gtggtggcaa atccgccaag cacaaagttc agaatgttca aaacggtacg
     2941 cataaaacct cgctttactg tggttttcag taatgggcgg caattgtaac gttttttggg
     3001 gctggagcac gttttctctg acggttacac tgataagaaa taatttcgtg tggatctaca
     3061 gagtcatgga actgaaagcg acaacgcttg gaaaacgtct ggtacagcac ccttacgatc
     3121 gggcggtgat cctcaatgcc gggattaaag tctccggcga tcgccacgaa taccttattc
     3181 ctttcaatca attactggcg attcactgta agcgtggtct ggtatggggc gagctggaat
     3241 ttgtactgcc ggacgaaaaa gtggtgcgtc tgcacggcac cgaatggggc gagacgcagc
     3301 gtttttacca tcatcttgat gctcactggc ggcggtggag tggcgagatg agcgaaattg
     3361 cgtctggtgt tttacgccag caactggatt tgattgccac gcgcactgga gaaaataaat
     3421 ggctgacgcg tgagcaaacc tctggcgttc agcaacaaat ccgccaggct ttgtcggcgt
     3481 tgccgttgcc ggttaaccga ctggaagaat tcgataactg ccgtgaggcg tggcgtaaat
     3541 gtcaggcctg gttgaaagat attgaaagcg ctcggttgca gcataaccag gcgtataccg
     3601 aagccatgct taccgagtat gcggattttt tccgccaggt cgagtcttca ccgctgaatc
     3661 cggcgcaggc ccgggcagtc gttaatggcg agcattctct gttagtgctg gcaggtgcag
     3721 gaagcggaaa aacgtcggtg ctggtggccc gtgcaggctg gttgctggca cgtggtgaag
     3781 cgtcccctga gcaaatttta ttgctggcgt ttggtcgcaa agccgctgaa gagatggacg
     3841 agcggattcg cgaacggcta cataccgaag acattaccgc acgcacgttt catgcgctgg
     3901 cgctgcatat tattcagcag ggcagcaaaa aagttccgat agtcagcaaa ctggaaaatg
     3961 ataccgctgc ccgtcatgaa ctctttattg ctgagtggcg caagcaatgc agcgaaaaga
     4021 aagcgcaggc gaagggctgg cggcaatggc tgacggaaga aatgcagtgg tcagtgccag
     4081 aaggtaactt ctgggatgat gaaaaattac agcgtcgcct tgcctctcgc ctcgatcgct
     4141 gggtaagtct gatgcggatg cacggtggtg cacaggcaga aatgattgcc agtgcacccg
     4201 aagagattcg cgatctgttc agtaaacgta tcaagttgat ggccccgtta ttaaaagcct
     4261 ggaaaggtgc gctgaaggca gaaaacgctg tcgatttttc gggccttatt catcaggcga
     4321 ttgtgattct ggagaaaggt cgctttatca gcccgtggaa gcatattctg gttgatgaat
     4381 ttcaggatat ctcgccgcag cgggcagcgt tgttagcggc attacgcaag caaaacagtc
     4441 agacgacgtt gttcgctgtt ggtgatgact ggcaggcgat ttaccgattc agcggtgcgc
     4501 aaatgtcgct caccaccgct ttccatgaaa actttggtga aggcgaacgt tgtgatttag
     4561 acacgactta ccgttttaac agtcgtatcg gtaaggtggc aaaccgtttt attcagcaga
     4621 acccaggcca gctgaaaaag ccgctaaaca gcttaaccaa tggagacaaa aaagccgtca
     4681 cgttattgga tgagagtcaa cttgacgctt tgctggataa gctctctggt tatgccaaac
     4741 cggaagagcg cattctgatc ctggcgcgtt accatcacat gaggcctgcc agcctggaaa
     4801 aagcggcaac acgctggccg aagttgcaaa tcgactttat gaccattcat gccagcaaag
     4861 ggcaacaggc tgattacgtc atcatcgttg gcttgcagga gggaagtgat ggttttccgg
     4921 ctgcggcgcg ggagtcgatt atggaagagg cgctactgcc accggttgag gatttcccgg
     4981 acgctgaaga acggcggtta atgtacgtgg cgctgacccg ggcacgccat cgggtatggg
     5041 cactgtttaa caaagagaat ccctctccct ttgttgaaat actgaaaaat ctggatgtgc
     5101 cggtggcgag aaaaccgtaa gaaacaggtg gcgtttgcca cctgtgcaat attacttcag
     5161 acggtccgcg agataacgct gataatcggg gatcagaata tcgaccgcgt cgttgaaatg
     5221 cggcgactgg attatgaagt ctgccgttgc cacgttggtg gcgaccggaa tgttccatac
     5281 cgtcgccaga cgcagcaagg ctttcacgtc aggatcgtgc ggcacggcat ttagtggatc
     5341 ccagaagaaa atcaatacat caattttccc ttctgagatc aatgcgccaa cctgctggtc
     5401 accccccatt gggccactca acatcgcgtt gacgttcatg ccggtcgcgc gggaaattaa
     5461 gttaccggta gtgcctgttg catacagtac gtgttgttcc agtaacggtt gatgccgttc
     5521 cacccagctc atcagcattt gtttgcagtg atcgtgtgcc accagcgcaa tatgtttccg
     5581 cgcaggtaaa gtgcgagtcg tcagttccat aatgtacatc cgtagtcaac tttcctacag
     5641 attactgtaa gcacttatcg ctgcaagata aagaccgaaa aagcctgcgc acaggcacaa
     5701 aaatctcagg aagatggttg tttttccgcc cactgcagga aagtatttcg cgtttgtggg
     5761 tcagccagtt taaaccaata cttcagccgt tgttctgtga gcacctgaga ctgcggtgga
     5821 atagcatcca gctcggaaac acccgaaagc agcgtactgt catctgccat catcgtggca
     5881 aattgcggta gtgaagcgcg tttcgcggat ttgttatagc gttcaacctc gacctcataa
     5941 tcaatcgttt ttgccgttga ggtaatggcg agaatatcca gctttaccgg aatcggcgtc
     6001 gcatcgccat ccaacaattc aaggcgcggc gcggcatcaa aatggttagc ttcccgctca
     6061 ttctccaggc gaggcaggcg aaaattgacc tggttgatga gctgggtatt aaaactgacc
     6121 accagcggtg gggagatata cagccgttct tcactattgg aaagatgaat cgtcttctca
     6181 acgcgaaaca ctaactgatg cggtccatta tccagttcaa tgctgtccgc accgcgtagc
     6241 agagagctgg aaaccttctt gccgtcgagt accagaagat cgacatcggt tgaaagccgc
     6301 agcgtggtgg caaaaacgga taccggcaaa cataatgcaa tcaaggtggt cacgatgccg
     6361 gttttcatag gtagctcctg tcaaaagacc gcccgaataa taatgtgtca aaatttttct
     6421 ttaatcatac ttactaacat atagacatat ttcccgcttt tgctctcatt cattcgtatt
     6481 agctgcatgg ttggcatgtc ggctttgtcg tacactttgt taaacagtct ggaggaaata
     6541 atgaaagaaa ccgatattgc aggcatttta acgtccactc acaccattgc gctggtgggg
     6601 gcaagcgaca aacccgatcg tcccagctat cgcgtgatga aatatctact cgaccagggg
     6661 tatcatgtca ttccggtttc gccaaaagtt gccggcaaaa cgctgctggg ccagcagggg
     6721 tatggcacgc tggcagacgt tccggaaaag gtcgatatgg tcgatgtttt ccgtaattca
     6781 gaagcggcgt ggggcgtggc acaggaagct attgccattg gcgcgaaaac cctctggatg
     6841 caactggggg tgattaatga gcaagcggca gtactggcac gggatgccgg gttgaatgtg
     6901 gtgatggatc gctgcccggc tattgagatc cctcgcctgg gcctggccaa ataaaaaatc
     6961 cccggaaggc aaaaaccttc cggggattcg ttcagggatc agttacgcag acgcggggcc
     7021 tggagttgtt tgcggatggt ctgcgccagc tcatccatgg atggctgttc aggatgttca
     7081 tcctgcaatt cgctacttag ctgggcttca gctaggtagg tatgaaccgg taggccgtta
     7141 tcgtcctcca tcactacgtg ataccacgga gcggcgcgaa gctcgtcatt taccgccagc
     7201 tcatcaggcg acggttcaga gagcgaataa accgggtcga tatccacgac cactccgaga
     7261 taacctaaca gggaatggcg gacctgctgg ccgataccga atttgctggc aatcatagtc
     7321 acctcccggg aaatctttac ctttgatata agggtaaaat tccacatttc aagttacatg
     7381 acgcgacagg caaacccttt cagatatagc ccttccggat aggtagcgat caccggatga
     7441 tcggctgcct gacggaactg ctctataaat tgtacatcac ggccggcatc aattgcggca
     7501 tccgcgatga ttttctgaaa taaatcgctg gtcatcagac cggaacagga gaaagtcagg
     7561 agaataccgc cttcattcag caactgaatc gccagcatgt tgatatcttt atagccacga
     7621 cacgcgccca tcaactggct tttattctca acaaacttcg gcgggtccat cacgataacg
     7681 tcaaattttt caccgcgatc gcgataagta cgcagcaatt taaagacatc atcacggaca
     7741 aactcagcct tgctcagatc cagtttgttc agctcaacgt tctgccgtgc aatatccagc
     7801 gcttcctggg aggtatcaac gctgacaacc tggctgcaac cgcccatcag tgccgatacg
     7861 gcgaaaccac cggtatagga gaaacagttc agcacacgtt tattttcaac gtagcggcgg
     7921 gtagccaggc ggctgtctcg ctggtccagg tagtagcccg ttttgtgccc gtgctgaata
     7981 tccaccagca gcttcatgcc gtgttcttca atcggcagca gggcaggcgg caactcgccg
     8041 gtgacgaggc ccagggtcag ctccatccct tcttttttac gtaccgcaac atcgctgcga
     8101 tcgtaaatcg cacattccgg gtacagcgtt tgcagggcac taactaatgc cgcgcgctga
     8161 tattctgccc cagcactcag cagttgcagc accagaaaat taccgaaacg atcgatagta
     8221 atacccggca ggccatcaga ttctccggcg attaaacgat agctgtcgag gccatctttt
     8281 tgcgccagcc agtcacgcca tttttgtgct tgttgcaaac ggcgggaaaa aaaagcaatg
     8341 tcgatagact cagacgggtc aaacgtccag acgcgcgccc ggatttgcga agctggcgaa
     8401 taagcgccgc gtgctaacca ttttccctga tgatcaacaa tatcgatggt ttcaccgagg
     8461 ctggctttac cttccatgcg ggcaacggtc ccggaaaaga cccacggatg gcgacgaagt
     8521 aatgattttt cgcgcccttt ggctaacact aaacgtacac tcataattta cttttctgtc
     8581 gatgcaaaga aatgggcgtc attgtccgga gttttccatg gatttgcaac gcgtccatta
     8641 aggataagga gagcagcaat gtcgaaagtc tgcataattg cctgggttta cgggcgagtt
     8701 cagggcgtag gatttcgcta caccacacag tacgaagcga aaagactggg tttaaccggg
     8761 tacgccaaaa atcttgacga tggcagcgtg gaagtggttg cctgcggtga agaagggcag
     8821 gtggaaaaat taatgcagtg gttaaagagt ggcagcccgc gttctgcgcg tgtagaacgg
     8881 gtgctcagcg agccgcatca tccctcgggg gaattaaccg attttcgtat ccgttaaata
     8941 cattttaccg gttttggcag gccagcaatt ttggtggctt gcttagccgg acctttcgga
     9001 aacagtcggt ataaatagcg gctgttacct ttttcttcgc caaatttatt cgccatcgct
     9061 tttaccagca tacgaatcgc cggagaagta ttgaattcca gatagaaatc acgcacaaaa
     9121 cgcaccactt cccagtgttc cggtgacagc gaaatccctt cgttctctgc aatcaccact
     9181 gccagcggct cactccactg gctgctttct ttgagatagc cttcggtatc cgtttctatc
     9241 tctttacctt cgaagatcag cataattatt actaccttaa tcagactggc ggcagtgtaa
     9301 caaaaaacaa ggccccgcat aaagcgaggc tatgaaagtg ttagcgggtg agattaatcg
     9361 cggctggcga agcccagaat gctcagcagg ctgacgaaga tgttgtacag cgaaacatac
     9421 aggctaaccg tggcacgaat atagttcgtt tcaccgccat gaacgatgtt gctggtttca
     9481 aacaaaatag cgccagagga gatcaaaatg aagaccgcgc tgatcgccag atgcagagca
     9541 ggcagctgca ggaagatatt agcaaccata ccaatcagca ccaccacaat acccgccatc
     9601 agcataccgc cgaggaacga catatctttg cgggtggtca gcacatatgc agagcagcag
     9661 aagaacacta acgccgttcc gcccagtgcc atagcgatta cgtcacccat tccggcagac
     9721 agataggtgt tcagaatagg tccgaggata taacccagaa aaccggtaaa ggcgaatgcg
     9781 gagataatcc cggtcggctt attcgccgtt ttataggtca ggaacatcaa accatacata
     9841 cccaccagcg tcagaatcag acccggagat ggcagcatca gcaccgtact ggcagttgcg
     9901 gtaatcgccg aaaaggccag cgtcaggctc agcagaaaat aggtattacg cagcacctta
     9961 tgggtgctaa gcagtgatgt acggtcatgt gaagaactaa caatacgatc cattgagtca
    10021 ctctctatga cagatgtaat taattaagca gcataatgat aatgcgtaag ggcacccaga
    10081 agttttaccc atctttacgc atttgatctg gaacaggttt aacagcggat tatcaggtca
    10141 ttaagcaaat ataacgccct gagaatttcg acaggcaaaa gaaaaagggg ttagcattta
    10201 gctaacccct tatcttattt ggcggaagcg cagagattcg aactctggaa ccctttcggg
    10261 tcgccggttt tcaagaccgg tgccttcaac cgctcggcca cacttccgga ataacgcgca
    10321 ctataaacat cccgatgcgg cgtgtaaacc cctaatttgt ttgtttgcct gaaaaacagc
    10381 caaaagtgca ttgatagcgt gaaataacag cagattgatc atttcatcac catgaattcc
    10441 ttctctttta ctcgtttagc aaccggctaa acatccccac cgcccggcaa aaagaaaaat
    10501 aggtccattt ttatcgctaa aagataaatc cacacagttt gtattgtttt gtgcaaaagt
    10561 ttcactacgc tttattaaca atactttctg gcgacgtgcg ccagtgcaga aggatgagct
    10621 ttcgttttca gcatctcacg tgaagcgatg gtttgccttg ctacagggac gtcgcttgcc
    10681 gaccataagc gcccggtgtc ctgccggtgt cgcaaggaga agagacgtgc gatatgaata
    10741 acgaggaaac attttaccag gccatgcggc gtcagggcgt tacccggcgc agctttctca
    10801 aatattgtag tctggctgcc acgtcgctgg gattaggcgc gggaatggca ccaaagattg
    10861 cctgggcgct ggagaacaaa ccccgcattc cggtggtatg gatccacggt ctggaatgca
    10921 cctgctgtac cgaatctttt atccgctccg ctcacccact ggcgaaggac gtcatccttt
    10981 ccctgatttc cctcgattat gacgatactt tgatggctgc cgccggaacc caggcggaag
    11041 aagtcttcga agacatcatc acgcaataca atggcaaata tatcctcgca gtagaaggta
    11101 atccgccgct gggcgagcag gggatgttct gtatcagcag cggtcgaccg tttattgaga
    11161 aactcaaacg tgccgctgcc ggagccagcg cgattatcgc ctggggaacc tgcgcgtcct
    11221 ggggctgcgt gcaggccgcg cggcccaatc cgacgcaggc aacgcctatc gacaaagtca
    11281 tcaccgacaa acccattatc aaagtacctg gctgcccgcc gatcccggat gtgatgagcg
    11341 ccatcattac ttacatggtg acctttgatc gcttgccaga tgtcgacaga atgggccgtc
    11401 cgctgatgtt ctatggtcag cgaatccacg ataaatgcta tcgccgcgcc cacttcgacg
    11461 ccggagagtt cgtccagagt tgggatgatg acgctgcccg caaaggttac tgcctgtaca
    11521 aaatgggctg caaagggcct accacctata acgcctgttc ctccacacgc tggaatgatg
    11581 gcgtttcttt cccaatccag tctggtcacg gctgcctggg ctgtgcggaa aatggtttct
    11641 gggatcgcgg ttcgttctac agccgcgtgg tcgatattcc gcaaatgggt actcattcca
    11701 ccgccgatac cgtcggttta accgcgcttg gcgtggtggc agcggctgtt ggtgtgcacg
    11761 cagtcgccag cgccgttgac cagcgcagac gtcataacca gcaacctaca gaaaccgaac
    11821 atcagccagg caatgaggat aaacaggcat gagcactcag tacgaaactc agggatacac
    11881 catcaataat gccggacgcc gcctggtggt cgacccgatt acgcgcatcg aaggccacat
    11941 gcgctgcgaa gtgaatatta acgatcagaa tgtgatcacc aatgccgtct cctgcggcac
    12001 catgtttcgc gggctggaga tcatcctaca agggcgcgac ccgcgcgatg cgtgggcgtt
    12061 cgttgaacgt atctgcggcg tctgtactgg cgtacacgcc ctggcttcgg tttacgccat
    12121 cgaagatgct atcggtatta aagtgccgga caacgccaat atcatccgca acattatgct
    12181 ggcaacgctc tggtgccacg atcatctggt gcacttctat cagcttgccg ggatggactg
    12241 gatcgatgtg ttagatgcgc tgaaagccga cccgcggaaa acctccgaac tggcgcaaag
    12301 tctctcctct tggccgaaat catcccctgg ctatttcttc gacgtacaaa accgcctgaa
    12361 aaaatttgtt gaaggcgggc agttggggat cttccgcaat ggctactggg ggcacccgca
    12421 gtacaaactg ccgccagaag ctaacctgat gggctttgcc cactatctcg aagctctcga
    12481 tttccagcgt gaaattgtca aaatccacgc ggtctttggc ggtaaaaacc cgcatccaaa
    12541 ctggattgtc ggcgggatgc cttgcgccat caacattgac gaaagcggcg cggtcggggc
    12601 agtcaatatg gaacgcctga acctggtgca gtcaattatc acccgcacgg cggacttcat
    12661 taacaacgtg atgatccccg acgccttagc catcggtcag ttcaacaaac cgtggagcga
    12721 aatcggcact ggtctttctg ataaatgcgt tctcagctac ggcgcattcc cggatattgc
    12781 caacgacttt ggcgagaaaa gtctgctgat gcttggcggc gcggtgatta acggcgactt
    12841 caacaatgtg ctgccagtgg atttggttga tccgcagcag gtgcaggagt ttgtcgacca
    12901 cgcctggtat cgatatccca acgatcaggt cgggcgtcat ccgttcgatg gcatcaccga
    12961 cccgtggtac aaccccggcg atgtcaaagg cagcgatacc aacattcagc agctgaatga
    13021 acaggaacgc tactcgtgga tcaaagcgcc acgctggcgc ggtaacgcga tggaagtggg
    13081 gccgctggcg cgcacgttaa tcgcttatca caaaggcgat gctgcgaccg ttgagtcggt
    13141 cgatcgcatg atgtcggcgt tgaacctgcc gctttccggt atccagtcaa cgttaggccg
    13201 cattttgtgc cgcgcgcacg aagcgcagtg ggccgcaggt aagttgcagt atttcttcga
    13261 caagctgatg accaacctga aaaacggcaa tctcgccact gcttccacgg aaaaatggga
    13321 acctgcaacc tggccgacag agtgccgtgg tgtcggtttt accgaagcgc cgcgcggggc
    13381 gttaggccac tgggccgcca ttcgcgatgg caagattgat ctctaccagt gcgtggtgcc
    13441 gaccacctgg aacgccagcc cgcgcgatcc caaagggcag attggcgctt atgaagcggc
    13501 gctgatgaac accaaaatgg cgatccccga gcaaccgctg gagatcctgc gtactctgca
    13561 cagctttgac ccgtgcctcg cctgttcaac acacgtgctg ggcgacgacg gtagcgagct
    13621 gatctccgtg caggtgcgtt aacagcgaag gagaatcatc atgcaacaga aaagcgacaa
    13681 cgttgtcagc cactatgtct ttgaagcgcc agtccgcatc tggcactggt tgacggtgtt
    13741 atgcatggcg gtgttgatgg tcaccggata ctttatcggc aagccgctac cttccgtcag
    13801 cggcgaggcg acgtatctgt tctatatggg ctacatcagg ttaattcact tcagcgccgg
    13861 gatggttttt accgtggttt tgctgatgcg gatctactgg gcttttgttg gcaatcgata
    13921 ctcccgcgag ctgtttatcg tgccggtatg gcgtaaaagc tggtggcagg gcgtgtggta
    13981 tgaaatccgc tggtatctgt ttctggcaaa acgtccgagt gccaatatag gccataatcc
    14041 catcgcccag gcggcgatgt tcggctattt cctgatgtcg gtctttatga tcatcactgg
    14101 ttttgcgctg tacagcgaac acagccagta cgctattttt gcgccgttcc gttatgtggt
    14161 ggaatttttc tactggacgg gtggcaactc aatggacatt cacagctggc atcggctggg
    14221 gatgtggctg attggcgcgt ttgtgatcgg tcatgtctac atggcgctgc gtgaagacat
    14281 catgtccgac gacacggtga tctccaccat ggtcaacggc taccgtagcc acaaatttgg
    14341 caaaataagt aacaaggagt gttcatgagc gagcaacgcg tggtggtcat ggggctgggc
    14401 aacctgctgt gggccgatga aggcttcggc gtgcgggtgg cggaacggct gtatgcccat
    14461 taccactggc ccgagtatgt ggagattgtc gatggcggta ctcagggact gaacttgctg
    14521 gggtatgtcg aaagcgccag ccatctgttg attctcgatg ccattgacta cgggctggaa
    14581 cctggaacgc tgcgaaccta tgccggagaa cgcattccgg cttatctcag cgcgaagaaa
    14641 atgagcctgc atcagaacag tttctccgaa gtgctggcgc tggcagatat ccgcggacat
    14701 ctgccagcac atattgccct cgtcgggctg caacccgcga tgctcgacga ctacggcggc
    14761 agtctgagcg aactggcacg ggagcaactg ctcgctgcgg aacaatcggc tctggcgcag
    14821 ttggctgcgt ggggaagtgt gccgcaaccg gctaatgaat cgcgttgtct caattatgac
    14881 tgtctgtcga tggaaaatta cgaaggcgtt cgcttgcgcc agtaccggat gacacaggag
    14941 gagcagggat gagcaacgac acgccatttg atgcgttgtg gcaacgaatg ctggcgcgcg
    15001 gctggacgcc ggtcagtgaa tcccgtcttg acgactggct tacgcaagcg ccagacggcg
    15061 tggtgttatt aagcagtgac ccgaaacgca cgccagaggt cagcgataat ccggtaatga
    15121 ttggcgaatt actgcacgag tttcccgact atacatggca ggtggcgatt gctgaccttg
    15181 agcagagcga agccatcggc gatcgctttg gcgtctttcg ctttcctacc actttagtgt
    15241 ttaccggcgg aaactatcgc ggcgtgctga atggtattca cccgtgggcg gaactgataa
    15301 acctgatgcg cgggcttgtc gaaccgcagc aggagcgtgc ctcatgagcg aaactttttt
    15361 ccatctgctg gggccaggaa cgcaaccgaa cgatgacagt ttcagcatga atccactgcc
    15421 gatcacctgt caggtgaatg atgaaccgag tatggcggcc ctggagcaat gtgctcacag
    15481 cccgcaggtg attgcgctgt taaacgagtt acaacatcaa ctaagcgaac gccagccgcc
    15541 gttgggcgag gtgctggcag tcgatctgtt aaatctcaac gccgacgatc gtcactttat
    15601 caatacgctt ctcggggaag gggaagtgtc agtgcgcatt cagcaggctg acgacagtaa
    15661 aagtgaaata caggaggcga tcttctgcgg attatggcgg gtgcgcagac gtcgcggcga
    15721 aaagttgctg gaggacaaac tggaggctgg ctgcgcgccg ctggcgttgt ggcaggcggc
    15781 aacgcaaaat ctcttgccga cagattcgct gttaccgccg cccattgatg gcctgatgaa
    15841 tggcctaccg ttggcgcatg agttactggc acatgtacgt aaccccgacg cgcagccgca
    15901 cagcattaat ctgacgcaat tacccatcag cgaggctgat cggctttttc tctcacgtct
    15961 ctgtgggccg ggaaatattc agattcgtac cattggctat ggcgagagct atatcaacgc
    16021 cacggggtta cgccatgtct ggcatttacg ctgtacggac accttaaaag gcccgttact
    16081 ggaaagttat gaaatctgcc caataccgga agtggtgctg gcagcgccag aagatttggt
    16141 cgactctgcg cagcggctta gcgaggtatg tcagtggctg gcggaagctg caccgacgta
    16201 aaaagacggt aagtatcgct ttcagtctta tgaatatcgc aatcggcgaa tacctctggt
    16261 cgtagagttt caggataaag agggagatct aacattatcg ggttattttt ctctcttcgc
    16321 ctacaggagt gcgcatgtgg gatgtcattg atttatcgcg ctggcagttt gctctgaccg
    16381 cgctgtatca ctttttattt gtacccctta ccctggggct gatttttttg ctggctatca
    16441 tggaaaccat ttacgtggtc accggcaaaa caatctaccg cgatatgacg cgcttctggg
    16501 gtaagctctt cggtatcaat tttgctcttg gcgtggctac cggcctgacc atggagtttc
    16561 agtttggtac taactgggca ttctattcca actatgtggg cgatattttt ggcgcaccgc
    16621 tggcgatgga agcattaatg gccttcttcc tcgaatccac ctttgtcggg cttttcttct
    16681 tcggctggca gcggctgaat aaataccagc acctgctggt gacgtggctg gtggcgttcg
    16741 gttcaaatct ctctgcattg tggatattga atgccaacgg ttggatgcaa tacccgaccg
    16801 gtgcgcattt tgatatcgac accctacgta tggagatgac cagcttcagc gagctggtct
    16861 ttaacccggt cagccaggtg aaatttgtgc acaccgtaat ggcgggctac gtgaccgggg
    16921 ccatgtttat tatggcgatc agcgcctggt atttactgcg cggacgggag cgcgatgttg
    16981 cattacgctc gtttgccatc ggttccgtct tcggtactct ggcgattatc ggcacgctac
    17041 aactcggaga cagttctgcg tatgaagtcg cgcaagtaca accggtaaaa ctggcggcga
    17101 tggaagggga gtggcaaacg gaacctgctc ctgcaccgtt ccatgtggtt gcctggccgg
    17161 aacaggatca agagcgtaac gcctttgcca tcaaaattcc cgcgctgtta gggatcctcg
    17221 ccactcactc attagataaa cccgtgccgg gtctgaagaa tttgatggct gaaacctacc
    17281 cacgtttgca acgcggacgt atggcctggc tgttaatgca ggaaatatcg caaggcaatc
    17341 gtgagccgca tgtgttgcag gcattccggg aactggaagg tgacctgggc tacggcatgt
    17401 tgctctcccg ctatgcgccg gatatgaatc atgtcacagc cgcacagtac caggcggcga
    17461 tgcgtggcgc gatacctcag gttgcgccgg tattctggag tttccgcatc atggtgggct
    17521 gtggttccct gctgctactg gtgatgctga ttgcgcttgt ccagacgctg cgtggcaaaa
    17581 tcgaccagca tcgctgggtg ctgaaaatgg cgctctggag tttgccgttg ccgtggattg
    17641 cgattgaagc cgggtggttt atgaccgagt ttggtcgtca gccgtgggcg atacaggaca
    17701 tcttaccgac atactccgcg cactccgctt taaccacagg acaactggct ttctcactga
    17761 tcatgatcgt agggctttac accctgttct taatcgccga agtctacctg atgcagaaat
    17821 atgcccgtct ggggccgagc gcgatgcaga gtgaacaacc gacgcagcaa caggggtaaa
    17881 ggagaaaatc atgtttgatt atgaaacatt gcgcttcatc tggtggctgc tgattggcgt
    17941 gatcctggtg gtctttatga tctccgacgg atttgacatg gggatcggct gtctgctgcc
    18001 gctggtggcg cgtaatgatg atgaacgccg gatagtgata aacagcgttg gtgcacactg
    18061 ggaaggcaac caggtctggt tgatcctcgc tggtggggca ttatttgccg cctggcccag
    18121 agtgtatgca gcggcgtttt ccggctttta tgtggcgatg atcctggtgc tgtgctcact
    18181 gttcttccgc ccgctggcct ttgattatcg cggaaaaatc gccgatgcac gctggcgtaa
    18241 aatgtgggac gccggtctgg tcatcggcag tctggtgccg ccggtagtct tcggtatcgc
    18301 cttcggcaac ttgttgctcg gcgtgccgtt tgccttcaca ccgcaattac gcgtggagta
    18361 tctcggcagc ttctggcaac tgctgacgcc attcccttta ttgtgcggat tgctcagcct
    18421 tgggatggtg attttgcaag gtggcgtctg gttacaactg aaaactgttg gtgtgattca
    18481 tctgcgttca cagctggcca ccaaacgcgc tgcactgttg gtgatgctgt gctttttgct
    18541 ggcgggttac tggctgtggg tcggtattga tggctttgta ctgctcgccc aggatgctaa
    18601 cggtccttcc aatccgttaa tgaaactggt ggcagtgcta cctggtgcct ggatgaataa
    18661 tttcgtcgaa tcgcccgttt tgtggatctt cccgctgctg gggttcttct gcccattgct
    18721 gacggtgatg gcgatttatc gtggtcgccc aggttgggga tttttaatgg cgtcattgat
    18781 gcaatttggc gtgattttca cggcaggcat cacgctgttc cccttcgtca tgccgtcaag
    18841 cgtgagtccg atctccagcc tgacgttgtg ggacagctct tccagccagc tgacgctgag
    18901 cattatgttg gtaatcgtgc tgatattttt gcccattgtg ttgctctaca ctctctggag
    18961 ctactacaaa atgtgggggc gcatgacaac agaaactctc cgccgtaacg aaaacgagtt
    19021 gtactaagga gcaggaacaa tgtggtattt actttggttc gtcggcattt tgttgatgtg
    19081 ttcgctctcc acccttgtgt tggtatggct ggacccgcgt ctgaaaagtt aacgaacgta
    19141 ggcctgatgc ggcgcattag catcgcatca ggcaatcaat aatgtcagat atgaaaagcg
    19201 gaaacatatc gatgaaagcg atcttaatcc catttttatc tcttctgatt ccgttaacct
    19261 cgcaatctgc attcgctcag agtgagccgg agctgaagct ggaaagtgtg gtgattgtca
    19321 gtcgtcatgg tgtgcgtgct ccaaccaagg ccacgcaact gatgcaggat gtcaccccag
    19381 acgcatggcc aacctggccg gtaaaactgg gttggctgac accgcgcggt ggtgagctaa
    19441 tcgcctattt cggacattac caacgccagc gtctggtggc cgacggattg ctggcaaaaa
    19501 agggctgtcc gcagcctggt caggtcgcga ttattgctga tgtcgacgag cgtacccgta
    19561 aaacaggcga agccttcgcc gccgggctgg cacctgactg tgcaataacc gtacataccc
    19621 aggcagatac gtccagtccc gatccgttat ttaatcctct aaaaactggc gtttgccaac
    19681 tggataatgc gaacgtgact gacgcgatcc tcagcaaggc aggagggtca attgctgact
    19741 ttaccgggca tcggcaaacg gcgtttcgcg aactggaacg ggtgcttaat tttccgcaat
    19801 caaacttgtg ccttaaacgt gagaaacagg acgaaagctg ttcattaacg caggcattac
    19861 catcggaact caaggtgagc gccgacaatg tctcattaac cggtgcggta agcctcgcat
    19921 caatgctgac ggagatattt ctcctgcaac aagcacaggg aatgccagag ccggggtggg
    19981 gaaggatcac cgattcacac cagtggaaca ccttgctaag tttgcataac gcgcaatttt
    20041 atttgctaca acgcacgcca gaggttgccc gcagccgcgc caccccgtta ttggatttga
    20101 tcatggcagc gttgacgccc catccaccgc aaaaacaggc gtatggtgtg acattaccca
    20161 cttcagtact gtttattgcc ggacacgata ctaatctggc aaatctcggc ggcgcactgg
    20221 agctcaactg gacgcttccc ggtcagccgg ataacacgcc gccaggtggt gaactggtgt
    20281 ttgaacgctg gcgtcggcta agcgataaca gccagtggat tcaggtttcg ctggtcttcc
    20341 agactttaca gcagatgcgt gataaaacgc cgctgtcatt aaatacgccg cccggagagg
    20401 tgaaactgac cctggcagga tgtgaagagc gaaatgcgca gggcatgtgt tcgttggcag
    20461 gttttacgca aatcgtgaat gaagcacgca taccggcgtg cagtttgtaa tgcataaaaa
    20521 agagcattca gttacctgaa tgctctgagg ctgatgacaa acgaagaact gtctaatgcg
    20581 tagaccggaa aaggcgttca cgccgcatcc ggccactttc agttttactc tttctcggag
    20641 taactataac cgtaatagtt atagccgtaa ctgtaagcgg tgctggcgcg tttaatcaca
    20701 ccattgagga tagcgccttt aatattgacg cctgcctgtt ccagacgctg cattgacaaa
    20761 ctcacctctt tggcggtgtt caagccaaaa cgcgcaacca gcaggctggt gccaacagaa
    20821 cgccccacga ccgcggcatc actcaccgcc agcatcggcg gcgtatcgac aatcaccaga
    20881 tcgtaatggt cgttcgccca ttccagtaat tgacgcatcc gatcgcgcat cagcagttca
    20941 gacgggttag gtggcacctg accgcgagta atcacatcaa agcctccttt gccaaaatgc
    21001 tggatcactt tgttgagctc atctttacct gccagatatt ccgacaagcc atgttcatta
    21061 ctcacggtaa acaggttatg cgaataacca cggcgtaagt cggcatcaat aaataacact
    21121 ttttgatcgg actgggcgat caccgctgcc agagttgaac tgacaaacgt tttaccactg
    21181 tctggcgtcg caccggtgat catcagaatg ttattctccg tctccatcat agcgaagtgc
    21241 agactggttc gtagcgcacg tacggcttcc acagcagaat ccgccgggtt atccaccgcc
    21301 aggaagggga tatttttagt acgatggcgc tgctgattag aaaataaatt tttcttacgc
    21361 agacgggtac gtttatccag ccactcggac attgggatag tggcataaac gctgatgccg
    21421 tgctcttcca gttgttccgg ggcttctaca ccacgacgca acatcgcacg cgccagcacg
    21481 gcacccaccg aaataaacag gccaagaata aaaccaagca ccacgttcaa cgcttttttc
    21541 ggtttcactg gctgcggctg agtgactgcc gggtcgataa tccgcacgtt accaatggca
    21601 ctggatttcg aaatactcaa ctcctgctgg cggttaagta attgcagata taccgcacgg
    21661 cccgcttcta cgtcacggct taaacgtaac acttcctgtt gagtggaagg cattgccgat
    21721 acccgcttat tcaggcgttt gcgttcttgc tccagcgtct ggcgtttttc cagcagcgca
    21781 cgataagttg ggtgatcttt cttatacagc tgggagatct ctgcctcgcg gaaagtcagc
    21841 tcattgagtt gattatcaac gttcacaatc tgctcaagaa cggctttggc ttctaggtta
    21901 aggtcaaccg aatcgcgctg ctggcgataa acgttgagtt tttcttccgc ctggtccagc
    21961 tcgctgcgca cttcaggcaa ctggcgctgt aagaattcaa ggctttgtga atcctgcgcc
    22021 gcctggcgag cgatattctg ttgcaaatag ttgttagcga tgctgttcag aatacgagta
    22081 atcaactggg gatcatcacc agtcatggta agttccagca tcccgctttc tttactgcgt
    22141 tcgctaacgg taaaggtttc ctgcaatgcg ttaatcgctt ccagttcggt aggctggctc
    22201 aggacaaact gtgttcctgg tttggcctta atgtccgcga tagtcagcgc aacgccatct
    22261 ttttccagac gctggccgac cataccattg acggtgaact cttcaccttc cagtgtatag
    22321 tggccgtttt ccccaaccgt gagtgtcagt tgctgatcct gaccattcag ttgtggaata
    22381 tgcatccagc tgatcgccag ctcacctggt ttttctttgg ttaatctcgc ccagccgcga
    22441 cccacaatcg gaaaatactt ctgctcaact atgtcgcgca gattcagttc agcaatggtt
    22501 ttaccgagaa tcatgcgcga ttgcagcagt tgaatctccg gtgcagactc gggcgatgag
    22561 ttagggatca tatcgctcag gccgctgaga atggcgttgc cctgtttttg ctcaacctgg
    22621 accagagtat ctgcctgata aattggtgtg cttaacagcg agtaagcgac agcgatcagc
    22681 gtgaataacg cggtcacgct gataataaac ttacggtgat cccataactc gccgaccaga
    22741 cgaagcagat cgatctcatt ttcctgagta ctgcctggtg gcgtattcat atttttagtt
    22801 gtcatcgtat tttataaact caaattaccg gctgaggcgc ttcgcccatt cctgactggc
    22861 gcgctccaac ataccgtaga catgttcaaa tgcgtcctga cttttacgat agggatccgg
    22921 gatctctttc tgttccagcc attgcccaaa cagcattgtc ttcccgcgga cctcgggagc
    22981 gattgcggta acctgagcaa tatgctctga ctccattgcc agaatcagat cgtaatttcg
    23041 tgccatctca gcagtgagct tacgtccggc atgtccttca agagatacgc catgattagc
    23101 ggcaacatct gctgctgtcg catctgcagg gtgttttacc agaccatgaa cacctgccga
    23161 tttgactttt acgcctggca gacgtttacg cagcaagcgc tcgccaatgg gcgaacggca
    23221 aatgttgccg gtacaaacca ccaggattga gttaaatttt agttgggcca tgtttgaatc
    23281 caccgtgaag tctctgtcag gtcatgcacc ccggaaatcg tcggtaccag cagagaaatc
    23341 acacggttcc aacgagccag cggcgcggta gtgacataaa caatgtcgta aggttcaagc
    23401 tggaattccg ttccgagtat cattgccgat gcgtccttcg cattcagctg ataaatattg
    23461 gcgattttgc cattctgctt gttttgcgtt gcacgaataa caaaaatccc cgtcgcatca
    23521 gcgacatcct gattcatacc ctcagcgtta cccagcgctt ccgccagggt cataccgctg
    23581 cggtccattt tcagcgtgct ctgtttaccc acttcaccca tcacgaagac tttcagatca
    23641 tcgttgcgcg gaataaataa aatatcgccc gggtgcagca gtttgttctg gcgcaagtcg
    23701 ccacgctgca tcagcgcata gaggttcact ttggtcttta cgccattctg ggtgagcacc
    23761 acgttgcgcc agtctgcatc tgcggtcaga ccgcccgcgg cgttaatcgc atccatgatg
    23821 gtcagaggaa tattggtaat cggctgctga cccgatttgc tgacttcgcc ggtgacgtac
    23881 gctttttgcg atcggaacgc cgcgacgctg acatcgactt gcgggctttc aatgactgaa
    23941 tcgagacgcg ctgtaatctc gttgcgtacc tgggtaagtg ttttcccggc cactttcagg
    24001 cgaccaatat aggggtagaa aatcgcacca tcggcgttaa cccagttgcc ggtatcactg
    24061 gcgctacggt attgccctgc gggggtggtt agttccgggt gatcccagac cgtaaccatc
    24121 aacacatcac caatcccgat acgatattca tagtttgcga tttgctgctc cagctccggg
    24181 ttagcctgcg acataatcgg tttggcgcgc aactgatcaa tcaatcctgg cgtgacggga
    24241 tagatattga ccattttgtc caggtcatac tgattgtcag gtagttcaat gacatccttg
    24301 ttactggtcg ataaattctg accaggaaca agggtacatg ctgtcaaaga cagaacagcc
    24361 aatgtcagta tcgaaaactt aaaaatgttc tttttcattg gtttatattt atcagtcaat
    24421 gtaatgttat gaattacgtc aggttattgt ccaaccggta cttctcgctc tgccgtcatt
    24481 ggatagagct ggtatttgcg tgacagcatt tgtccaccat cacgcgtcaa tggtgtccac
    24541 gaaaccaccg cgcggttgcg gttaggtcca atggtcatca agtcgaatgg aatcgagata
    24601 taaaaacctt tactaaagcc gccttcgccg tagtcatctt tagatacgtt actgattgcc
    24661 gcccataccc ctaccgccac gccgctgtca aagcgtttgg cgacgtcgat cgttgcgcct
    24721 ttatcttttg ccagatattg cccaacgcta agtttcatca gtacgccatt gagcgtcggc
    24781 gggttccagt aagccgtcac gaaaccagtt ggcgtggaat aatcggtgaa gcgcatcatg
    24841 ttgtcccagt cacgttgctt cacgtagtta acgtccacac ccagcgccca gctggcatct
    24901 agcgggcgat aaagcagctc ggaaccgaca ccggcgtaca tcgtttccag ataaccgcca
    24961 tacacctggc catagaaacc attgcctaag tcggcaaagt agttcgcctg caagttgttg
    25021 agataaacgt cattgcgaac gtaatcacgg atatgcgtgc gcacgcgggg cagggtagag
    25081 tccgcgggca acagcgaaga cttaaacttg tcgtagttgt tgtaaatatt ggtgaaaata
    25141 ccgccatcaa gcagcaggtg gtcggtaaac cagtagcggg cactgggcat cagccccagc
    25201 tggaacatat agaaatcttc cgggccgccc agcgactgtg aaagtgttgg gttgaaagag
    25261 tagctaaagc gatcttcacg aatacggtag ccccgaccaa aggcagaaag atcttctgct
    25321 tcaacacgtt gttgttgaag ttgctctgat tgaccaggcg ctgtaccagc cagctgtttg
    25381 cgcaggctgg ctacgtcggt ttcggtagtc accatcgcca tatgctcgcg cttttgcgtc
    25441 acgctaatct tctcaacgcc ttgcggcagg ttattcacca gaatccggtt ggcacgatcg
    25501 accgcttcgc gagaatcacg gtatttgtat tgttgaccag acatatacag cgtcttatcg
    25561 cgcagctgaa tttccggtgc ttcaaaacct gcgttgtact tcagcgcggt aagttggttc
    25621 gctactgtgg tgtactgcaa tccttcagat tcaggcgcag gttgatatgc cggttttggc
    25681 gtatcgcgca gggcagggcg cagatcgttg aaattggtcc gtaacgtgaa gccaaacatc
    25741 aacgtgttac cgcgttcata actcaggttg agatctgccc agctggcagc gcgataaact
    25801 gcgccgacgt tgaaatggct tgcctgaggc agtttgccag cgaaatcatt ctggtaattg
    25861 ttgccatcgt attcgagttt cagacgcagg ggattccacg gcgtttgata ctcaatgccg
    25921 ccaaagatgg aagccgggcc acgaaagata tcgctaaagc tgatatcgcc cgcatcgtga
    25981 gactctgcgc gatgacaata tttatcgctc acccggcaaa acgggttggt aatattgccc
    26041 gcattaccgg cgtagcccca tgccatcccg agggtgaaat caaatggccc cgcttgcttg
    26101 ctggccacca gatactcacc gtcaaacaga cccgtaccag caatatcacg tttaccaaac
    26161 gccacttgcg gtagccagta accttcttcc cacaggcgaa gtttaaaatc gaatgatttg
    26221 tctttgtatg actgatcgcc gctgaaatct tcccactggc tatatttgcg tgtgcgcaca
    26281 tccgtataac gaatggtgcc ttccagccat gggaacagcg ccacggaggt ggagtagaac
    26341 cggtattgat cgttatcccg gtagttgacg ctgaattcac cttccggtgc gatgcgcgca
    26401 tttggcatct gcaacaatcc tgtgccgcca aagtctgatt gcgacgaacc cagcggatcc
    26461 gggtaggtta atacttcagc atgacaggca ctggagacgg caatggccag gcagcttaaa
    26521 agataagaat tcttcttcat cagtcaggaa cacgttgcgt taaaacagac acaatctggt
    26581 catttaaatc agcatatttt tcgggcagta catgcgcaga aaagcccaac caaagctggc
    26641 tgccaggcgg tggttccaca tgtcttttat tccacagggc aacaggggcg acgacagtct
    26701 caccctcagg cgtaatcacc ataacgttat tcttgtccgc gcctgcaagg cgggggtgat
    26761 cttgcagata atcggtaacg ctacggcctg cctgccaggg caattgcccg gccccagaaa
    26821 ccgcacccag cagagtaata gtcaccggac gctgtacggt atagagcgta tagtccccga
    26881 ccaacggggg attgctgttc tcatccactc gaacaaaatc agggtccagt ttgaccggta
    26941 agcgaccagt gatattgaga ttgagtaact gctggcgcac ggatttaatc gttgccgcca
    27001 catcgtcgtt agcttctgct tcccaggaag caagctgtgc catgacatgt tggtagtctt
    27061 taagcgcttt agctttcgcc gcagagtcgg tcagcaaggc accaggccac cagaggcgat
    27121 cgcgcagttg cggttgtgtc accaactgga caacattttc catggggcca acggaaagtg
    27181 tctgttgttc gccaggcaga taaatagtca ccgttccttg cgcaaaggca tggggtgtca
    27241 ttacgtaaag tacgctggca atgaaatacg actgtaattt attcatggtg cgggtttaag
    27301 aaacgtcatt tctacgggaa taacccctgc gcctaacatt tgccgacttt gacgaacctg
    27361 gccagtagcc gaatcggccc agaatgtgtt ttgccactgt ttttctggcc gcgtggaagt
    27421 cacctcttcc tgccagacat tacacagcac attgcgaccc gcaatattca gcgtctctaa
    27481 tccagcaaag gaaaaagtag aactcagggt cgcagagcga aaatggttgt cttcactcca
    27541 gagaatatcg cgcgtccagc ggctgccatc ttttattgcc agcgcgttac gcagagggtc
    27601 ctgcccggaa tttgtcactt ccagcagatt attattaagt ttgacggttt ttaaaagacg
    27661 tccattgtgg gtaaccagca tggcgttatc ctgggataac catttgcttt gttcttgttc
    27721 tatatatccc agtaccacaa agattcgttg cccttcatta aggcgtaaat acatcgtgga
    27781 ataaggcaac gcctggatct gctgatccgc tacggtgata tcctgattat cgaaaaggct
    27841 ggcgcgaaat gtatcgacca tactttgctg gctgtgcgta catcccgcaa gaaatagtgc
    27901 gaaaatcgat aaaataagag ggcgcacctt taatccttga aaggttaatt aaaaaaatgc
    27961 aaatctttaa agcccggtac gaatatcgca accgggtatc atttaacttt aatttcgacg
    28021 cgttaaagca gtattagcgt gtagtggacg tggtggttga ggtgttatga gaaccgccat
    28081 cgccactgtc atttgctgca acaactgcca acgtcgccac accaacagcc gttgccacac
    28141 cgacaactgt cgccgtgccg acagcgccag cagccacgcc accagtggta gtagcagtcg
    28201 tggttgcgcc ggtagtggtc gttgtggtgc cagtagtacc cgtcgttgcc tcggtcccgt
    28261 ttgttgcttc aggggcagca aacgcagctg gcgtcgtcaa catgaaggcc ataaggattg
    28321 cagaaagctt gtgtttcata acttttcctt tattcatcgc atggacaata cgtacgcttg
    28381 agatcaggat tgtctacttt gagtataaca tccttgtgaa atctcccttt cctcataccg
    28441 cttgcactat atactgcggg taggaaaggc gcgcagaggg aaatataaga ttgttaacta
    28501 tcctcctctg gaaatacgac ttgtgagcat aagataaatc ttagcaaaat acaaattaaa
    28561 gataaggaaa ttgttacgaa agctattaat tattgttggt aatatagttt caagtggtac
    28621 tataactggc tgttaaatgg catttataac tattaggtgc agagatattc gcttaaatgg
    28681 attagtttct ttgtggaaaa gtaactgatg ttataatata tgatgttgac tattgcacta
    28741 ttccaataaa accagtcagc tttaaacaag cagcgtcata ttaagagaga taaacatttg
    28801 ccgctgttgg tcctcgcagg ccatttacgc ggcaaaattc cacacgtaat cctggtataa
    28861 gcacttctgc gtcgcgggga gtgaatgcgg aaatatggac ctgaacttct ttacgaccgt
    28921 cggaggggat aatgaatcct ttgccgcttt tgcgatcaaa ggttttgaca attcctgtca
    28981 ttttacggga caaacaaatt ccttactgaa aatactgcgc tgcactatac ggggttaata
    29041 aaataaagcc agcgatattt aagaccgccg gacggctaaa ataaaatttg cttaatctca
    29101 attatcatgc gttaatagct gcgtcggttt gaaagacaga cagcatacaa agtagtttac
    29161 taaagcagtt ctcattatca ggcattatcc ccttcttttg agtctctctc ctgaacacta
    29221 agtagtttct gtattaaagc cctgtttgcc gaaaggccca aaatgaagga agtaaaatat
    29281 gtctaataaa atgactggtt tagtaaaatg gtttaacgca gataaaggtt ttggctttat
    29341 cactcctgat gatggcagca aagacgtttt cgtccatttc actgccatcc agagcaatga
    29401 attccgcacg ctgaacgaaa atcagaaagt tgaattttct attgagcagg ggcaacgtgg
    29461 ccccgcggca gcgaacgttg ttacgctcta aggttgccgt tattactcaa catctccatt
    29521 tccgctgtcc atgttgtcat ggttcacagt accgcacatc ggcattcgat gtgacggagc
    29581 gaaatccttt gggcgctaag tgtatttttt gtaaatcgac gatgatcacc tttgataacg
    29641 ttgcgctgca aatacgcact gaccatgcgc cgctggattt cacaaaataa tatcaggctc
    29701 cctcg
//
LOCUS       DADMHM010000030        29424 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.031, whole genome shotgun sequence.
ACCESSION   DADMHM010000030 DADMHM010000000
VERSION     DADMHM010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 29424)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29424)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29424
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.031"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            1..183
                     /locus_tag="JN125_001164"
                     /pseudo
     CDS             1..183
                     /locus_tag="JN125_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001699175.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
     gene            180..740
                     /locus_tag="JN125_001165"
                     /pseudo
     CDS             180..740
                     /locus_tag="JN125_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000154988.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
     gene            complement(783..1643)
                     /gene="rsmI"
                     /locus_tag="JN125_001166"
     CDS             complement(783..1643)
                     /gene="rsmI"
                     /locus_tag="JN125_001166"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HAY8871013.1"
                     /translation="MKQHQSADNSQGQLYIVPTPIGNLADITQRALEVLQAVDLIAAE
                     DTRHTGLLLQHFGINARLFALHDHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPG
                     YHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKAIE
                     AEPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVK
                     EDENRRKGEMVLIVEGHKAQEEDLPADALRTLALLQAELPLKKAAALVAEIHGVKKNA
                     LYKYALEQQG"
     gene            1707..3743
                     /locus_tag="JN125_001167"
     CDS             1707..3743
                     /locus_tag="JN125_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator"
                     /protein_id="HAY8871014.1"
                     /translation="MVPSTFSRLKAARCLPVVLAALIFAGCGTHTLDQSTAYMQGTAQ
                     ADSAFYLQQMQQSSDDTRINWQLLAIRALVKEGKTRQAVELFNQLPQELNDSQRREKT
                     LLAVEIKLAQKDFAGAQNLLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIA
                     QEPLLGAKEKKQNIDATWQALSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDP
                     DMMKAGIADWQKRYPNNPGAKMLPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTI
                     QQGFEAAKNIGTQPVAAQVAAAPAADVAEQPQPQTADGVASPAQASVSDLTGDQPAAQ
                     PVPVSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLLKNNV
                     EELLKSNTPLNVLALNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIP
                     RSSLGDRVANAFAQEWQKLGGGTVLQQKFGSTSELRAGVNGGSGIALTGTPITPRATT
                     DSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGSQSGAML
                     YASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMG
                     VDAWSLANHFSQMRQVQGFEINGNTGSLTANPDCVINRKLSWLQYQQGQVVPAS"
     gene            3701..4096
                     /locus_tag="JN125_001168"
     CDS             3701..4096
                     /locus_tag="JN125_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HAY8871015.1"
                     /translation="MATVPTRSGSPRQLTTKQTGDAWEVQARRWLEGKGLRFVAANVN
                     ERGGEIDLIMREGWTTVFVEVRYRRSALYGGAAASVTRSKQHKLLQTARLWLARHNGS
                     FDTVDCRFDVVAFTGNEVEWIKDAFNDHS"
     gene            4116..4706
                     /gene="diaA"
                     /locus_tag="JN125_001169"
     CDS             4116..4706
                     /gene="diaA"
                     /locus_tag="JN125_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA initiator-associating protein DiaA"
                     /protein_id="HAY8871016.1"
                     /translation="MQERIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKI
                     LCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQ
                     VRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVE
                     IRIPSHRSARIQEMHMLTVNCLCDLIDNTLFPHQDD"
     gene            4716..5291
                     /gene="yraP"
                     /locus_tag="JN125_001170"
     CDS             4716..5291
                     /gene="yraP"
                     /locus_tag="JN125_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divisome-associated lipoprotein YraP"
                     /protein_id="HAY8871017.1"
                     /translation="MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQ
                     VDDGTLEVRVNSALSKDEQIKKETRINVTAYQGKVLLVGQSPNAELSARAKQIAMGVD
                     GANEVYNEIRQGQPIGLGEASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMG
                     LVTEREAKAAADIASRVSGVKRVTTAFTFIK"
     gene            complement(5405..6445)
                     /locus_tag="JN125_001171"
     CDS             complement(5405..6445)
                     /locus_tag="JN125_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HAY8871018.1"
                     /translation="MTGQSSSQAATPIQWWKPALFFLVVIAGLWYVKWQHYYGKAFTA
                     AETHSIGKSILAQADANPWQAALDYAMIYFLAVWKAAVLGVILGSLIQVLIPRDWLLR
                     TLGQSRFRGTLLGTLFSLPGMMCTCCAAPVAAGMRRQQVSMGGALAFWMGNPVLNPAT
                     LVFMGFVLGWGFAAIRLVAGLVMVLLIATLVQKWVRETPQTQAPVEIDIPEAQSGFFS
                     RWGRALWTLFWSTIPVYILAVLVLGAARVWLFPHADGAVDNSLMWVVAMAVAGCLFVI
                     PTAAEIPIVQTMMLAGMGTAPALALLMTLPAVSLPSLIMLRKAFPAKALWLTGAMVAV
                     SGVIVGGLALLF"
     gene            complement(6518..7153)
                     /locus_tag="JN125_001172"
     CDS             complement(6518..7153)
                     /locus_tag="JN125_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417621.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HAY8871019.1"
                     /translation="MSQVLITGATGLVGGHLLRMLINEPKVNAIAAPTRRPLGDMPGV
                     FNPHDPQLSDALAQITDPIDIVFCCLGTTRREAGSKEAFIHADYTLVVDTALTGRRLG
                     AQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIARPSMLLGDRSKQRMNE
                     TLFAPLFRLLPGNWKSIDARDVARVMLAEAMRPEHEGVTILSSSELRKRAE"
     gene            7281..7799
                     /gene="yhbO"
                     /locus_tag="JN125_001173"
     CDS             7281..7799
                     /gene="yhbO"
                     /locus_tag="JN125_001173"
                     /EC_number="3.5.1.124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417622.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein/nucleic acid deglycase"
                     /protein_id="HAY8871020.1"
                     /translation="MSKKIAVLISDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVK
                     GKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVTFTRDFVNSGKPVFA
                     ICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLP
                     AFNREALRLLGA"
     gene            complement(7779..8222)
                     /locus_tag="JN125_001174"
     CDS             complement(7779..8222)
                     /locus_tag="JN125_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhbP family protein"
                     /protein_id="HAY8871021.1"
                     /translation="METLITISRWLAKQHVVTWCVQQEGELWCANAFYLFDAQKVAFY
                     ILTEEKTRHAQMSGPQAAVAGTVNGQPKTVALIRGVQFKGEIRRLEGEESDLARKAYN
                     RRFPVARMLSAPVWEIRLDEIKFTDNTLGFGKKMIWLRDSGTEQA"
     gene            8273..8575
                     /gene="yhbQ"
                     /locus_tag="JN125_001175"
     CDS             8273..8575
                     /gene="yhbQ"
                     /locus_tag="JN125_001175"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708956.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA damage response exodeoxyribonuclease YhbQ"
                     /protein_id="HAY8871022.1"
                     /translation="MTPWFLYLIRTADNKLYTGITTDVERRYQQHQSGKGAKALRGKG
                     ELTLAFSAPVGDRSLALRAEYRVKQLTKRQKERLVAEGAGFAELLSSLQTPEIKSD"
     gene            complement(8562..9065)
                     /locus_tag="JN125_001176"
     CDS             complement(8562..9065)
                     /locus_tag="JN125_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HAY8871023.1"
                     /translation="MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGL
                     VATDDEGQVIGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARKLVYEGLDSLNE
                     FGYAAVVTLGDPALYSRFGFELAAHHDLRCRWPGTESAFQVHRLADDALNGVTGLVEY
                     HEHFNRF"
     gene            complement(9059..9583)
                     /locus_tag="JN125_001177"
     CDS             complement(9059..9583)
                     /locus_tag="JN125_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCP2 domain-containing protein"
                     /protein_id="HAY8871024.1"
                     /translation="MLNKLRSRIVHLGPSLLSVPVKLTPFALKRQVLEQVLSWQFRQA
                     LDDGELEFLEGRRLSIHVRDIDLQWFTSVVNGKLVVSQNAQADVSFSADASDLLMIAA
                     RKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKALRMMLLQLADFVEAGMK
                     TAPETKQTSVGEPC"
     gene            9792..10772
                     /locus_tag="JN125_001178"
     CDS             9792..10772
                     /locus_tag="JN125_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017457364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HAY8871025.1"
                     /translation="MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTE
                     KKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEY
                     AAERYPNIERHVSVQASATNEEAINFYHRHFDVARVVLPRVLSIHQVKQLARVTPVPL
                     EVFAFGSLCIMSEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNEVLID
                     RYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQR
                     SPAYVSQVAKVWRQAIDRCKADPQSAWMETLGSMSEGTQTTLGAYHRKWQ"
     gene            10781..11659
                     /locus_tag="JN125_001179"
     CDS             10781..11659
                     /locus_tag="JN125_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312067.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HAY8871026.1"
                     /translation="MKYSLGPVLWYWPKETLEDFYQQAATSSADVIYLGEAVCSKRRA
                     TKVGDWLEMAKSLAGSGKQIVLSTLALVQASSELGELKRYVENGEFLIEASDLGVVNM
                     CAERKLPFVAGHALNCYNAVTLKILLKQGMMRWCMPVELSRDWLVNLLNQCDELGIRN
                     QFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRNVLSQENQQVFVLN
                     GIQTMSGYVYNLGNELTSMQGLVDVVRLSPQGTDTFAMLDAFRANENGAAPLLLTANS
                     DCNGYWRRLAGLELQA"
     gene            11865..12872
                     /locus_tag="JN125_001180"
     CDS             11865..12872
                     /locus_tag="JN125_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HAY8871027.1"
                     /translation="MTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRY
                     WLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLY
                     PGRIDLGLGRASGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPG
                     YGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKP
                     YAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYGV
                     QQALSMSLVGDKAKVRHGLQSILRETDADEIMVNGQIFDHQARLHSFELAMDVKEELL
                     G"
     gene            complement(12990..14234)
                     /gene="mtr"
                     /locus_tag="JN125_001181"
     CDS             complement(12990..14234)
                     /gene="mtr"
                     /locus_tag="JN125_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005131807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan permease"
                     /protein_id="HAY8871028.1"
                     /translation="MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWS
                     MAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYIL
                     TYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAK
                     VITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYY
                     GKDPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGV
                     LNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAMGRLKTALLTFAPPV
                     VGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRKRFGSPKFRVWGGKPMITLIL
                     VFGVGNALVHILSSFNLLPVYQ"
     gene            complement(14388..16277)
                     /locus_tag="JN125_001182"
     CDS             complement(14388..16277)
                     /locus_tag="JN125_001182"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417631.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH family ATP-dependent RNA helicase"
                     /protein_id="HAY8871029.1"
                     /translation="MAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR
                     DVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR
                     GVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE
                     MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRP
                     DISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALN
                     GDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIG
                     RTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQ
                     QQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKR
                     EFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAI
                     ANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPH
                     TGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRR
                     FGGDA"
     gene            complement(16270..16350)
                     /gene="yrbN"
                     /locus_tag="JN125_001183"
     CDS             complement(16270..16350)
                     /gene="yrbN"
                     /locus_tag="JN125_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YrbN"
                     /protein_id="HAY8871030.1"
                     /translation="MKIADQFHDELCRLAAINFEAHVLHG"
     gene            complement(16457..17341)
                     /gene="nlpI"
                     /locus_tag="JN125_001184"
     CDS             complement(16457..17341)
                     /gene="nlpI"
                     /locus_tag="JN125_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020802045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein NlpI"
                     /protein_id="HAY8871031.1"
                     /translation="MKPFLRWCFVATALTLAGCSNTSWRKSEVLAVPLQPTLQQEVIL
                     ARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL
                     GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD
                     PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER
                     LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVVNNVHNFVEHRYALL
                     ELSLLGQDQDDLAESDQQ"
     gene            complement(17450..19585)
                     /gene="pnp"
                     /locus_tag="JN125_001185"
     CDS             complement(17450..19585)
                     /gene="pnp"
                     /locus_tag="JN125_001185"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312072.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HAY8871032.1"
                     /translation="MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTV
                     VGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPIRPL
                     FPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ
                     YVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQN
                     INELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSE
                     TIATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVL
                     PRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGM
                     VGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLAL
                     MDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSREGISALQMD
                     IKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIK
                     DVIGKGGSVIRALTDETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRV
                     YTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ
                     GRIRLSIKEATEQSQPAAAPEAPAAEQGE"
     gene            complement(19832..20101)
                     /gene="rpsO"
                     /locus_tag="JN125_001186"
     CDS             complement(19832..20101)
                     /gene="rpsO"
                     /locus_tag="JN125_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004933502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HAY8871033.1"
                     /translation="MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFA
                     EHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQLIERLGLRR"
     gene            complement(20250..21194)
                     /gene="truB"
                     /locus_tag="JN125_001187"
     CDS             complement(20250..21194)
                     /gene="truB"
                     /locus_tag="JN125_001187"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HAY8871034.1"
                     /translation="MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHT
                     GALDPLATGMLPICFGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT
                     FSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLF
                     IRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERMVTLEH
                     LRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP
                     LEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVEYPA"
     gene            complement(21194..21595)
                     /gene="rbfA"
                     /locus_tag="JN125_001188"
     CDS             complement(21194..21595)
                     /gene="rbfA"
                     /locus_tag="JN125_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001712908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HAY8871035.1"
                     /translation="MAKEFGRPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMS
                     RDLAYAKVYVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNS
                     LVEGMRMSNLVTSVVKHDEERRVNPDDSKED"
     gene            complement(21759..24431)
                     /gene="infB"
                     /locus_tag="JN125_001189"
     CDS             complement(21759..24431)
                     /gene="infB"
                     /locus_tag="JN125_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HAY8871036.1"
                     /translation="MTDVTIKTLAAERQTSVERLVQQFADAGIRKSADDSVSAKEKQT
                     LIDHLNQKNSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERL
                     AAEEQAQREAEEQARREAEESAKREAQQKAEREAAEQAKREAAEQAKREAAEKDKVSN
                     QQDDMTKNAQAEKARREQEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTDN
                     AEPTEDSSDYHVTTSQHARQAEDESDREVEGGRGRGRNAKAARPKKGNKHAESKADRE
                     EARAAVRGGKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQVIK
                     AMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAP
                     VVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAA
                     FTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPD
                     RVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMAS
                     GAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSI
                     PVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMT
                     EGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASN
                     AILVGFNVRADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLA
                     EVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVR
                     NGMECGIGVKNYNDVRTGDVIEVFEIIEIQRTIA"
     gene            complement(24456..25943)
                     /gene="nusA"
                     /locus_tag="JN125_001190"
     CDS             complement(24456..25943)
                     /gene="nusA"
                     /locus_tag="JN125_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005131833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HAY8871037.1"
                     /translation="MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEID
                     VRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTF
                     DRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLELGNNAEA
                     VILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGE
                     EVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLW
                     DDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGW
                     ELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKEL
                     LEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGIDRDLAFKLAA
                     RGVCTLEDLAEQGIDDLADIEGVTDEKAGALIMAARNICWFGDEA"
     gene            complement(25971..26423)
                     /gene="rimP"
                     /locus_tag="JN125_001191"
     CDS             complement(25971..26423)
                     /gene="rimP"
                     /locus_tag="JN125_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004125659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HAY8871038.1"
                     /translation="MSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDSED
                     GINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVTLV
                     LRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF"
     gene            complement(26630..26706)
                     /locus_tag="JN125_001192"
     tRNA            complement(26630..26706)
                     /locus_tag="JN125_001192"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(26670..26672),aa:Met,seq:cat)
     gene            27054..28397
                     /gene="argG"
                     /locus_tag="JN125_001193"
     CDS             27054..28397
                     /gene="argG"
                     /locus_tag="JN125_001193"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HAY8871039.1"
                     /translation="MTTILKHLPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTAN
                     LGQPDEEDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNT
                     TPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDT
                     DFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEYLNSSVKIVN
                     PIMGVKFWDESVKIPAEEVTVRFEQGHPVALNGKTFSNDVEMMLEANRIGGRHGLGMS
                     DQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHAHGRQLGRLLYQG
                     RWFDSQALMLRDSLQRWVASQITGEVTLELRRGNDYSILNTVSENLTYKPERLTMEKG
                     DSVFSPDDRIGQLTMRNLDITDTREKLFGYAKTGLLSSSATSGVPQVENMENKGQ"
     gene            complement(28405..>29424)
                     /locus_tag="JN125_001194"
     CDS             complement(28405..>29424)
                     /locus_tag="JN125_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HAY8871040.1"
                     /translation="LLSIANTVPYFQLSVRDTGIDTYVLIVGESVRVDNMSLYGYTRS
                     TTPQVEAQRKQIKLFNQAISGAPYTALSVPLSLTADSVLSHDIHNYPDNIINMANQAG
                     FQTFWLSSQSAFRQNGTAVTSIAMRAMETVYVRGFDELLLPHLSQALQQNTQQKKLIV
                     LHLNGSHEPACSAYPQSSAVFQPQDDQDACYDNSIHYTDSLLGQVFELLKDRRASVMY
                     FADHGLERDPTKKNVYFHGGREASQQAYHVPMFIWYSPVLGDGVDRTTENNIFSTAYN
                     NYLINAWMGVTKPEQPQTLEEVIAHYKGDSRVVDANHDVFDYVMFRKEFTEDKQGNPP
                     PEGQG"
BASE COUNT         7031 a         8060 c         7380 g         6953 t
ORIGIN      
        1 tcacaaccga ccaggttgtc tctgttaaca cccgattcac acagataaaa agcagcaccg
       61 tatattctgc tgcaacccaa acgggtgttt gccagggtga cacgtctcgt tatggacccg
      121 ttaatattgg tgcaaatacc acctttaccc tgtatgtcac caagccattt ctcggctcga
      181 tgaccattcc gaaaacggat attgccgtca ttaaaggcgc gtgggtcgat ggaatgggaa
      241 gcccgtctac aggtgacttc catgatttag tcaagttatc gattcaggga aatctcaccg
      301 ccccacagtc atgcaaaatt aatcagggcg atgttattaa ggttaatttt ggattcatca
      361 atggtcagaa gtttaccacc cgtaatgcca tgccagacgg ttttactcca gtagactttg
      421 atatcactta tgactgtggt gatacttcaa agattaaaaa ctcgttgcaa atgcgcatcg
      481 acggtacaac tggggtagta gaccagtaca acctggtcgc caggcgaaga agttcagaca
      541 atgtgcccga tgtcggtatt cgtattgaaa atctcggcgg cggagttgca aatattcctt
      601 ttcagaacgg tatccttccc gttgatcctt ccgggcatgg caccgtcaat atgcgcgcct
      661 agccagttaa tctggtcggt ggtgagctgg aaacaggaaa atttcagggc acagccacca
      721 ttaccgtcat ggtgcggtaa aagaagacgt tgcgttttga ttaacgcaac gcttcggcac
      781 tgttacccct gctgctccag cgcatactta tacagcgcat ttttcttcac gccatgaatt
      841 tctgcgacca gcgccgccgc ttttttcagc ggcagttctg cctgtagcag cgccagcgtg
      901 cgcagggcat cggcgggtaa gtcttcttcc tgtgctttat gaccttcgac aatcagcacc
      961 atttcgcctt tgcgacggtt ttcatcttcc tttacccacg ccagcagttc gccaacgggc
     1021 gcgccgtgaa tggtttccca ggttttggtc agctcacgcg ccagaaccac gtagcgggat
     1081 tcgcctaata ccgcaacgat atcttccagg ctatctaaca gacggtgggt ggattcataa
     1141 aaaatcagcg tgcgcggctc cgcttcaatg gcttttagcg catcacggcg gccttttgat
     1201 ttggcaggta aaaagccttc gtaacagaaa cggtcagagg gtaaacccgc ggcgcttaac
     1261 gcagtgatag cagcacacgg cccgggtagc ggcaccacgc gaatccccgc ttcacggcag
     1321 gtacgcacca gatggtagcc aggatcgtta attagcggcg ttccggcatc ggaaaccagc
     1381 gcaatgtttt gcccctcttg cagcttcgcc agcagcgttt cggctttttg ttgttcgtta
     1441 tggtcgtgca gcgcaaacaa ccgggcatta atcccaaaat gttgcagcaa taaaccggtg
     1501 tgacgagtat cctcggcggc aatcagatca acggcctgta atacctctaa cgcacgctgg
     1561 gtgatatccg ccagattgcc gattggcgtc ggtacaatgt aaagctggcc ctgagaatta
     1621 tccgccgatt ggtgttgttt cattgtgtcg tccgtattgc cgatttaata ttgagcattg
     1681 cgtaaaaaaa tatcactgga tacattatgg taccctcaac attttctcgt ttgaaagccg
     1741 cgcgttgtct gcctgttgtt ctggcagccc tgattttcgc cggttgtggc acccatactc
     1801 tcgatcagtc cactgcttat atgcagggca cggcgcaggc tgattctgcc ttttatcttc
     1861 agcagatgca gcaaagctct gatgatacca ggatcaactg gcaattactc gccattcgtg
     1921 cactggtgaa agaaggtaaa accaggcagg cggttgagtt gtttaaccaa ctaccgcaag
     1981 aactgaacga ttctcagcgt cgcgagaaaa cactgctggc ggtagagatt aaactggcgc
     2041 agaaagattt tgctggcgcg caaaacttgc tggcgaaaat cacacctgcc gatttagaac
     2101 aaaaccagca agcgcgttac tggcaggcaa aaatcgatgc cagccagggg cgtccttcca
     2161 ttgatttact gcgcgcgtta attgctcagg aaccgctgct cggcgcgaaa gaaaaaaagc
     2221 agaatattga tgccacctgg caggcgctct cctccatgac tcaggaacag gcgaatacgc
     2281 tggtgatcaa cgccgacgaa aatattctgc aaggctggct ggatctgcag cgcgtctggt
     2341 ttgataaccg taacgatccc gatatgatga aagccgggat cgccgactgg cagaaacgtt
     2401 atccgaacaa tccgggcgcg aaaatgctgc caacgcagtt ggttaacgta aaagcgttta
     2461 aaccagcctc gaccaacaaa atcgccctgc tgttgccgct gaatggccag gcagcggtat
     2521 ttggtcgcac tattcagcaa ggctttgaag cggcgaaaaa tatcggcact cagccagtgg
     2581 cggctcaggt agctgccgca cctgccgcag acgtagcaga acaacctcag ccgcaaactg
     2641 cggatggcgt tgccagcccg gcacaagcct cggttagcga tctgaccggt gatcagcctg
     2701 cggcccagcc ggtgcctgta agcgccccgg cgacaagcac cgcagcggta agcgcacccg
     2761 caaatccatc cgcagagctg aaaatctacg atacctcatc acaaccactt agccagatct
     2821 taagccaggt tcagcaggat ggcgcgagta ttgtggttgg tccgttgctg aaaaataacg
     2881 ttgaagagtt gcttaagagc aacaccccgc tgaacgtgct ggcactgaac cagccggaga
     2941 atatcgaaaa ccgcgtcaat atttgttact tcgcgctttc accggaagac gaagcgcgcg
     3001 atgcagcgcg tcatattcgt gaccagggta aacaagcgcc gctggtgctg atcccacgca
     3061 gttcattggg cgatcgcgta gccaatgcgt ttgcgcagga gtggcagaaa ctgggcggcg
     3121 gcaccgttct gcaacaaaaa tttggttcca ccagcgaatt acgcgcgggt gttaacggcg
     3181 gttctggtat cgctttaacg ggtaccccga ttactcccag agcgacaacc gactccggca
     3241 tgacgaccaa caatccaacg ctgcaaacca cgccaaccga tgaccagttc accaataatg
     3301 gcggtcgtgt cgatgcggtg tacattgtgg caacgccggg tgaaatcgct tttatcaaac
     3361 cgatgatcgc catgcgtaac ggtagccaga gcggtgcaat gctgtacgcc agctcccgca
     3421 gcgcacaagg caccgcaggc ccggatttcc gtctggagat ggaaggtttg cagtacagcg
     3481 aaatcccgat gctggcgggc ggtaatctgc cgttaatgca gcaggcactc agcgcggtga
     3541 ataacgatta ttcactggct cgcatgtatg cgatgggcgt cgatgcctgg tcgctggcaa
     3601 atcatttctc acaaatgcgc caggttcagg gttttgaaat caacggtaat accggaagcc
     3661 tgacggcaaa cccggattgc gtgattaaca ggaagttatc atggctacag taccaacaag
     3721 gtcaggtagt ccccgccagt taaccaccaa acagaccggc gatgcgtggg aagtacaagc
     3781 gcgtcgctgg ctggaaggca aaggactgcg atttgtcgcc gctaacgtga acgagcgtgg
     3841 cggtgagatc gatctgataa tgcgtgaagg ctggaccacc gtttttgtcg aggtgcgtta
     3901 ccgccgctct gcgctttatg gcggcgcggc agccagtgtg acccgcagca aacaacacaa
     3961 attattacag actgcccgct tgtggctcgc gcgtcataat gggagttttg atactgtgga
     4021 ttgccggttc gatgtggtag ccttcaccgg gaatgaggtt gagtggatta aggatgcctt
     4081 taatgaccac tcataattaa ggtttaagga ttagcgtgca agaaagaatt aaagcttgct
     4141 tcactgaaag cattcaaact caaattgcgg cggcagaggc gcttccggat gccatctccc
     4201 gtgcagccat gacgctggtt cagtctctgc tcaatggcaa caaaatcctc tgttgtggta
     4261 atggaacttc cgctgccaat gcacagcatt ttgctgccag catgatcaac cgtttcgaaa
     4321 cggagcggcc cagcttacct gccattgcac taaatactga taatgttgtc ttaacggcga
     4381 ttgccaacga tcgcttacat gatgaagtgt atgcaaaaca ggtgcgggcg ctgggtcatg
     4441 cgggagatgt attgttagcc atttccaccc gtggcaacag ccgcgatatt gttaaagcag
     4501 ttgaagccgc cgttacgcgt gatatgacca ttgtggcatt gaccggctat gacggcggcg
     4561 aacttgcagg tttgttaggg ccacaggatg tggagatccg cattccttcg catcgtagtg
     4621 ctcgcattca ggaaatgcat atgctgacgg taaattgcct gtgcgatctg atcgataaca
     4681 cgcttttccc tcaccaggat gattaaggag aatacatgaa ggcattatcg ccaatcgcag
     4741 tccttatttc cgcgctgctg ttgcaaggtt gtgttgccgc tgccgtagtg ggtaccgctg
     4801 ctgtgggtac caaagccgca actgacccac gcagtgtcgg cacccaggtg gacgatggta
     4861 ccctggaagt gcgcgtgaac agcgcattgt cgaaagacga acagattaag aaagaaaccc
     4921 gtattaatgt cacggcgtat cagggcaaag tgctgctggt tgggcagtca ccaaatgctg
     4981 aactttcggc tcgcgccaaa cagattgcta tgggcgtaga cggtgccaac gaagtgtata
     5041 acgagattcg tcagggccag ccgattggtc tgggcgaagc atctaacgat acgtggatca
     5101 ccaccaaagt gcgttcgcag ctcttaacca gcgacctggt gaaatcgtcc aacgtgaaag
     5161 tgaccaccga aaacggtgaa gtgttcctga tggggctggt gactgaacgt gaagcgaaag
     5221 cggcggcaga tattgccagc cgggtgagcg gcgtaaagcg ggtaaccaca gcgtttacgt
     5281 ttattaaata gcagcccctt gtaatgcctg atgcgacgct tgccgcgtct tatcaggcct
     5341 acaacgatgc aaaccgtagg tcggataagg cgtttacgcc gcatccgaca tgttttccct
     5401 caaatcagaa caacagcgcc agcccgccga caatcacacc agacactgcc accatcgccc
     5461 ctgtcagcca taaggctttc gccgggaacg ctttgcgcag cataatcagt gacggcaaac
     5521 tcactgccgg gagcgtcatc aacaatgcca gcgccggagc ggttcccata cctgccagca
     5581 tcatcgtttg tacaatcgga atttctgctg ccgtgggaat gacaaacaag catcctgcta
     5641 ccgccatcgc caccacccac atcaggctgt tatcgacagc accatcggca tgggggaata
     5701 accagacgcg tgcggcaccc aacaccagta ctgcaaggat gtaaaccggg atcgtactcc
     5761 agaaaagtgt ccatagcgcc ctgccccagc ggctaaaaaa accgctctgt gcttccggta
     5821 tgtcaatttc gaccggtgcc tgcgtttgcg gtgtttcacg cacccatttt tgcaccagcg
     5881 tcgcaatcag caacaccatc accagcccgg ccaccagacg aatcgccgca aaaccccagc
     5941 cgaggacaaa ccccataaac accagcgtcg ccgggtttaa caccggattg cccatccaga
     6001 atgccagcgc accgcccatc gatacctgtt ggcgacgcat ccccgccgcg accggagccg
     6061 cacagcaggt acacatcatg cccggcagcg aaaacagcgt tcccagcagc gtgccgcgaa
     6121 agcgcgattg cccaagcgta cgcaacaacc agtcacgcgg gatcagcacc tgaatcaacg
     6181 aaccgaggat cacccccagc accgccgctt tccatactgc gaggaaatag atcatcgcgt
     6241 aatccaacgc cgcttgccac ggattagcat ccgcctgcgc aaggatagat ttaccgatac
     6301 tgtgggtttc ggctgcagta aacgctttgc cgtagtaatg ttgccatttc acataccaga
     6361 gaccggcaat gacaacgaga aagaaaagcg cgggtttcca ccactgaatg ggcgttgccg
     6421 cctgagatga agactgacca gtcatagcat tccctaggaa taagttatga taattgagcg
     6481 cgtgaatatt acgctcacta tcaattcttg ggaataatta ttcagctctt ttgcgtaatt
     6541 ctgaagagct taaaatcgtc acgccttcat gctcaggccg catcgcctct gccagcatga
     6601 cccgcgccac gtctctcgca tcaatggatt tccagttacc tggtaacaaa cggaacagcg
     6661 gcgcaaaaag cgtttcgttc atccgctgtt tgctacgatc gcccagtaac atcgacgggc
     6721 gagcaatggt caatttcggc cagttctggg caattaatgc ttcttccatc tcccctttga
     6781 cgcggttata gaaaaacggc gagtgggcat tggcccccat agcactgacc accagcatat
     6841 gctgcgcgcc cagccgccgc ccggttaatg cggtatccac taccagcgtg taatcggcat
     6901 gaataaacgc ctctttgctc cccgcttctc gccgcgtggt gccgagacaa caaaacacaa
     6961 tgtcgatggg gtcggtgatc tgcgccaacg cgtcactcag ttgcggatca tggggattaa
     7021 acaccccggg catatcgccc aacggacgtc gcgtcggcgc agcaatggcg ttaactttcg
     7081 gttcattaat caacatccgc agcaggtgac cgcccaccag ccccgttgcg cctgtaatca
     7141 gtacctgact catcttcgct cctttacaga attgtctgcc ttgcgctcca cggctcatgc
     7201 accagtctta atagaccatg aggtaattat ccccgattgt gggaaattcg cctcatccaa
     7261 tgcaacaacg cggaggaagc atgagtaaga aaattgccgt tttaatcagt gatgaatttg
     7321 aggattcaga atttacttca cccgcagacg agttccgtaa agccggacac gaagtaatta
     7381 ccattgaaaa gcaagcgggt aaaacggtga aaggcaaaaa aggagaagcc agcgtgacca
     7441 tcgataaatc catcgatgaa gtgacgccag cggagttcga tgccctgctg ctaccgggcg
     7501 gccattcacc ggattatctg cgtggggaca accgttttgt cacctttacc cgtgattttg
     7561 tgaatagcgg caaacctgtt ttcgccatct gtcacggtcc gcagctgctg atcagcgccg
     7621 atgtgattcg ggggcgcaaa ctgaccgcag ttaaaccgat cattattgat gttaaaaatg
     7681 cgggcgcgga attttacgat caggaagtcg tggttgataa agatcagctg gttaccagcc
     7741 ggacaccgga cgatctgcca gcgtttaacc gcgaggcgtt acgcctgctc ggtgcctgag
     7801 tcgcgtagcc aaatcatttt tttaccaaag cccagcgtgt tgtcggtgaa tttgatttca
     7861 tcgagccgga tttcccacac cggggccgac agcattctgg caaccggaaa gcgacgattg
     7921 tacgccttgc gcgcgaggtc gctttcctca ccttccagcc tgcggatctc acctttaaac
     7981 tgcacaccgc gaattaacgc taccgttttc ggctgaccgt ttaccgttcc ggcaaccgca
     8041 gcctgcggcc cactcatctg cgcgtggcgc gttttttctt ccgtcaaaat gtagaaggcg
     8101 actttctgcg catcaaacag ataaaaagca ttagcgcacc acagttcccc ttcctgctgc
     8161 acacaccagg tgacaacatg ttgttttgcc aaccaacggc tgatggtgat gagtgtttcc
     8221 attgctgttc tcttttatac tgtgggcctg accttaacat gcgacgcaga cgatgacacc
     8281 ctggtttctt tacttgatcc gtaccgccga caataagctt tataccggga tcaccacgga
     8341 tgtcgaacgc cgctatcagc agcaccaaag cggcaaaggg gcgaaagcac tgcgcgggaa
     8401 aggagaactg acgctggcgt tttctgcgcc agtgggcgac cgttcgctgg cactacgggc
     8461 ggaatatcgc gttaagcaac tgaccaaacg gcaaaaagag cgtctggtag cggaaggcgc
     8521 agggtttgca gaactgttga gcagcctgca aaccccggag attaaaagcg attgaaatgc
     8581 tcgtgatact caaccagacc ggttacgcca ttcagcgcgt catccgctaa acgatgtacc
     8641 tggaaggcgc tttcagtgcc cggccagcgg caacgcagat cgtgatgcgc cgccagttca
     8701 aagccgaaac gactgtacag cgccggatcg cccagcgtca ccactgcggc atagccgaac
     8761 tcattaagcg aatcgagtcc ttcatagacc agtttgcgtg ccagcccctg tccacggtat
     8821 ttttcatcaa ccgccaacgg tgccatgccg acccattgca ggtcttcgcc ctgcacatca
     8881 accggactaa atgccacata gccaatgacc tgaccttcgt catctgtcgc caccagcccc
     8941 agcgtcagaa agccatcttc acgcagatcg tgaaccagct tcgcttccgc atcactttcg
     9001 aatgagcgac gcagcagggc atcaataccc ggcgcatcaa tgggaatttc tactcgaatt
     9061 agcatggttc acctaccgat gtctgtttgg tttcaggcgc ggttttcatt cccgcctcaa
     9121 caaaatccgc cagttgcagc agcatcatgc gtaaggcttt cggcatttgc tccagttcaa
     9181 tggcgtccat caggtttttc acatacagcc ccagctccgt atcgccttca atcaccagcc
     9241 gacgctggaa gaagagcgta tctggatctt gtttacgcgc cgcaatcatc agcagatcgc
     9301 tggcgtcggc actaaaactc acatcagctt gcgcgttctg gctgaccacc agtttgccat
     9361 tcaccaccga ggtaaaccat tgcaggtcaa tatcacgcac atgaatactt aacctgcggc
     9421 cttcaagaaa ctccagctcg ccatcatcca gcgcctgacg gaattgccag cttaagacct
     9481 gctcaagaac ctggcgtttt agcgcaaatg gcgtcagttt taccggtaca ctcaacagag
     9541 atggccccaa atgcacaata cgggaacgca gtttattcaa cacgagtttt actccctgtt
     9601 tcaacaatca tcctattttg ccatatcaga aaaataacat agcggtataa atcaacaatt
     9661 ccatatgaaa ttgctgctac caccaataca actttaactg ccttaaatca aaaattgtcg
     9721 cagcaaggtt aactaaaatc ccagttcgtt aacatttttg cgttttgata gcgcaacctt
     9781 caggaaaaat tatggagctg ctctgccctg ccggaaatct cccggcgctt aaggcggcca
     9841 tcgaaaacgg cgcagatgct gtttatatcg ggctaaaaga tgataccaat gcccgtcact
     9901 tcgccggcct taactttacc gagaaaaaat tgcaggaagc ggtgagtttt gtccatcaac
     9961 atcgccgcaa acttcacatc gcgattaaca cttttgcgca tccggacggt tacgcccgtt
    10021 ggcagcgcgc cgtggatatg gcggcgcagc tgggtgccga cgcgctgatc ctcgccgacc
    10081 tcgccatgct ggaatacgcc gccgagcgtt atccgaatat tgagcgccac gtatcggtgc
    10141 aggcttcggc gaccaatgaa gaggcgatta acttttatca tcgccatttt gacgttgccc
    10201 gcgtggtgct gccgcgcgtg ttgtcgattc atcaggtgaa acagctggca cgggtcacac
    10261 ctgtaccact ggaagtgttt gctttcggca gcctgtgcat tatgtcggaa ggccgttgct
    10321 atctgtcgtc gtatctgacg ggtgagtcgc ctaacaccgt gggcgcgtgt tctccggccc
    10381 gtttcgtgcg ctggcaacaa acgccgcagg ggctggaatc ccgcctgaac gaagtgctga
    10441 tcgaccgtta tcaggacggc gaaaacgcag gttatccgac gctgtgtaaa gggcgttatc
    10501 tggtggacgg cgagcgctat cacgcgctgg aagaaccaac cagtctcaat accctggaac
    10561 tgctgccgga gttaatggcg gcgaatattg cttcggtgaa aattgaaggc cgccagcgta
    10621 gcccggcgta tgtcagccag gtggcgaaag tctggcgtca ggctatcgac cgttgtaagg
    10681 ccgatccgca aagcgcgtgg atggagacgc tcgggtcgat gtccgaaggc acgcagacca
    10741 cccttggcgc gtatcaccgt aaatggcagt gagaagagca atgaaatatt ccttagggcc
    10801 agtgctgtgg tactggccaa aagagacgct ggaagatttt tatcagcagg ccgccaccag
    10861 cagcgccgac gtgatttatc ttggtgaagc ggtatgcagc aagcgccggg caaccaaagt
    10921 tggcgactgg ctggagatgg caaaatcgct cgccggaagt ggcaagcaga ttgtgctctc
    10981 cacgctggcg ctggtgcagg catcctctga actgggcgaa ctgaaacgct atgttgagaa
    11041 cggtgagttt ctgattgaag ccagcgatct cggcgtggtg aatatgtgcg ctgaacgcaa
    11101 actgccgttc gtcgccgggc acgcgctgaa ctgctacaac gcggtgacgc tgaaaatatt
    11161 gctcaaacag ggcatgatgc gctggtgtat gccggtggag ctttcccgcg actggctggt
    11221 gaatctgctt aatcagtgcg atgagctggg cattcgcaac cagtttgaag tggaagtcct
    11281 gagctacggt catctaccgc tggcctactc cgctcgctgc tttaccgcgc gttcggaaga
    11341 ccgcccgaaa gatgagtgtg aaacctgctg cattaagtat ccgaacgggc gcaacgtgct
    11401 gtcgcaggaa aaccaacaag tgtttgtact caatggcatt cagaccatga gcggctacgt
    11461 ttacaacctc ggtaacgagc tgacatccat gcagggattg gttgatgtgg tccgcctgtc
    11521 accgcagggt actgacactt tcgcgatgct cgacgccttc cgcgctaatg aaaatggcgc
    11581 tgcgccacta ttgttgacgg caaacagcga ctgtaacggc tactggcggc ggctggcagg
    11641 actggagctg caagcctaag taaatatgct cgtcatactt caagttgcat gtgctgcatc
    11701 tgcattcgtt caccccagtc acttacttat gtaagctcct ggagattcac tctcttgtcg
    11761 ccttcctgca actcgaatta tttagagcac agctcacttt gttaacaact ttaactactc
    11821 tttaatgcag tattaaagat taatcggtaa caaagtgagc tgttatgact gataaaacca
    11881 ttgcgttttc gctactcgat ctggccccca ttcccgaagg ttcttcagcg cgagaagcat
    11941 tctcccactc tctcgatctc gcccgtctgg ctgaaaagcg cggctatcat cgctactggc
    12001 tggcagaaca ccacaatatg actggcattg ccagtgctgc cacgtcggta ctgattggct
    12061 atctggcggc gaataccacc acgctgcatc tggggtctgg cggcgtgatg ttgcctaacc
    12121 actcaccgtt ggtcattgcc gaacagttcg gcacgctcaa tacactctat ccggggcgaa
    12181 tcgatttggg gctggggcgt gcgtcaggta gtgaccaacg gacaatgatg gcgctgcgtc
    12241 gccatatgag cggcgatatt gataatttcc cccgcgatgt cgcggagctg gtggactggt
    12301 ttgacgcccg cgatcccaat ccgcatgtgc gcccggtacc aggctatggc gagaaaatcc
    12361 ccgtgtggtt gttaggctcc agcctttaca gcgcgcaact ggcggcgcag cttggtctgc
    12421 cgttcgcgtt tgcctcacac ttcgcgccgg atatgttgtt ccaggcgctg catctttatc
    12481 gcagcaactt caaaccgtcg gcacgactgg aaaaaccata cgcgatggtg tgcatcaata
    12541 ttatcgccgc cgacagcaac cgcgatgccg aattcctgtt tacctcaatg cagcaagcct
    12601 ttgtgaagct gcgccgcggc gaaaccgggc aactgccgcc accgattcaa aatatggatc
    12661 agttctggtc gccgtccgaa cagtatggtg tgcagcaggc gctgagtatg tcgttggtag
    12721 gtgataaagc gaaagtgcgt catggcttgc agtcgatcct gcgcgaaacc gacgctgatg
    12781 agattatggt caacgggcag attttcgacc accaggcgcg gctgcattcg tttgagctgg
    12841 cgatggatgt taaggaagag ttgttgggat agtgtgtctt aacgcgggaa gccttatccg
    12901 agctggcaac gctgtcctac gtagacctga taagcgaagc gcatcaggca ttgtgtaggc
    12961 agcagaaatg ttggataagg caccgctgat tactgataca ccggcagtaa attaaagctc
    13021 gataaaatat gtaccaatgc gttgccgacg ccaaacacca gaatcagcgt aatcatcggc
    13081 ttgccgcccc agacgcggaa tttcgggctg ccaaagcgtt tacgcgatgc gcgggccagc
    13141 agtgccggaa caattgccgc ccagatggta gccgctaaac cagcataacc aatggcgtac
    13201 aggaatccat tcgggaacag cagaccaccc acaacaggcg gtgcaaaggt caacaatgct
    13261 gttttcaagc ggcccatagc cgagtcatcg aaaccaaaca gatctgccag atagtcaaac
    13321 aaacccagcg ttacgccaag gaacgaactc gctaccgcaa agtttgagaa cacgaccagc
    13381 agaaggtcca ggctacggct gttcagcacg ccgcttaatg cctgtaccag cacatcaata
    13441 ttaccgccct tctctgcaat accgataaac tccggacgcg ggatgttacc catcgtcgcc
    13501 agcaaccaga tggtatacag cgccagtgcc atcagcgtac cgtacaccag gcatttcacg
    13561 atggttttcg gatctttgcc gtaatacttc atcaggcttg gcacgttacc gtgataacca
    13621 aacgacgcca ggcagaacgg caatgtcatc agcagatacg gcgcataaga tgcattgctt
    13681 tctgcaacgt tgaacaatgt cgcaggctgc acatgcccca acaggctgcc aaaggtgagg
    13741 aagaaggtaa tgactttcgc ccccagcaca atcgccgtca tgcggctgac ggccttagta
    13801 ctcaaccaca ccacaaacgc taccagcagt gcaaaaccaa aacccgccgc ccgtgccggg
    13861 acgtttagcg acatctctgc gaaggtgtga tgcagaattg aaccactggc agaaatatag
    13921 gcataggtca ggatatagag cacaaaggca atggaaatac cgttgaccac gttccagcct
    13981 ttgcccagca aatctttggt gatggtgtca aaactcgaac cgattcggta attcaggtta
    14041 gcttccagaa tcatcaagcc ggaatgcagc atacagaacc aggtaaagat cagcgccgcc
    14101 attgaccaga aaaaccacgc cccggacatg accactggca gagaaaacat ccctgcgcca
    14161 ataatggtgc cgccgataat caccacgccg ccaagcagcg acggtgacgt ttgggtggtg
    14221 gttagtgttg ccatgagggc ttctctccag tgaaaaatag tgcgactgcg ttgttatgca
    14281 ttgcactgta ccagtacgcg agtacaaaag acagaaaaaa agccccgatg gtaaaaatcg
    14341 gggctgtata tattatttta cagattgtgt tcgctgttca gcgatgatta cgcatcacca
    14401 ccgaaacgac gacgaccggt agagtcatca cgacgcggag cgcggccttc acgacgttcg
    14461 ccgctaaaac gacgaccatc accacggcca ccttcacggc gttcaccgct gaagttacga
    14521 ccgccttcac gacgttcgcc accgaaacca cgaccaccgc cacgacgctc accgccagta
    14581 tgcggctgtg catcgcccag taactgcatg ttcatcggct tgttgagaat gcgagtgcgc
    14641 gtaaagtgtt gcagcacttc acccggcata cctttcggca gttcgatggt ggagtgagaa
    14701 gcaaacagct tgatgttacc aatgtaacgg ctgctgatgt cgccttcgtt agcaatcgca
    14761 ccaacgatat gacgaacttc aacaccatca tcacggccca cttcaatgcg gtacagctgc
    14821 atatcgccaa catcacgacg ttcacgacgc ggacgatctt cacggtcacc acgcgggcca
    14881 cggtcgttac gatcgcgcgg accacggtca tcacggtcac ggaattcacg tttcggacgc
    14941 atcggcgcat ctggcggtac gatcagagta cgttcaccct gtgccatttt cagcagtgcc
    15001 gcagccagag tttcgagatc cagctcttca ccttctgcag tcggctgaat tttgctcagc
    15061 agtgcgcggt attgatccag atcgctgctt tccagctgct gctgtacttt agcggcgaat
    15121 ttttccagac ggcgtttgcc cagcagttct gcgttcggca gttctacttc cggaatagtc
    15181 agcttcatag tacgttcaat gttgcgcagc agacgacgct cgcggttctc aacgaacagc
    15241 agcgcgcggc cagcacgacc cgcacgaccg gtacgaccga tacggtgaac gtaagactca
    15301 gaatccatcg ggatatcgta gttaactacc aggctgatac gctcaacgtc caggccacgg
    15361 gctgcaacgt cggtcgcaat caggatgtcc agacgaccat ctttcaggcg ttccagtgtc
    15421 tgttcacgca gcgcctggtt catgtcaccg ttcagcgcgg cgctgttgta gccgttacgc
    15481 tcaagagctt cagccacttc cagagtcgcg tttttggtac gaacgaagat aatcgccgca
    15541 tcaaaatctt ccgcttccag gaaacgtacc agtgcttcgt ttttgcgcat accccagaca
    15601 gtccagtagc tctggctgat gtcaggacgg gtagtcacgc tggactgaat gcgcacttcc
    15661 tgcggctctt tcataaagcg gcgggtaatg cgacgaatcg cttccggcat ggttgcagag
    15721 aacagagcgg tctgatgacc ttccgggatc tgcgccataa tggtttcaac gtcttcgatg
    15781 aagcccatgc gcagcatttc gtcagcttca tccagaacca gaccgctcag tttagagagg
    15841 tccagagtgc cacgtttcag gtggtccagc agacggcccg gagtaccgac aacgatctgc
    15901 ggcccctgac gcagggcgcg taattgcacg tcataacgct ggccgccgta cagagcaacc
    15961 acatttacgc cgcgcatgtg tttagagaaa tccgtcattg cttcagcaac ctgtaccgcc
    16021 agttcgcggg tcggtgccag caccagaatc tgtggtgctt tcagctcagg atcaagattc
    16081 tgcaacagag gtaaagagaa tgctgcagtt tttccgctcc ccgtctgggc catacccaga
    16141 acgtcgcggc cattcagcag atgtggaata cactctgcct gaattggaga tggtttttcg
    16201 taacccagat cgttaagggc ttcaaggata ggagccttca ggcccagatc tgcaaaagtg
    16261 gtttcgaatt cagccatgta gtacgtgtgc ctcaaaatta atggcggcca gtctacataa
    16321 ctcatcatga aattgatcag caattttcat tgaaaagtgt gaaccggctc aaagtaggtg
    16381 tattaacgaa caacaacgcc ctcacccgtt aaggtgatgg caatcaaaaa agattacggg
    16441 ctgatgtgta cgtcagctat tgctggtccg attctgccag gtcatcttgg tcctggccca
    16501 ggagcgataa ttccaacaat gcgtatcggt gctcaacaaa gttatgaacg ttgttgacaa
    16561 ccgccagttt gaacagggcc gtggcgctgt ccaaatcccc cagacttagg tagtacttac
    16621 ctaaatagaa gttggtttca ctgagatgct cagcgagcga ggtgttatcc gttgcgtccg
    16681 ccttgagcct ttccattaac gtttgttcgc taatgttgcc caggtagaac tcgacaatgt
    16741 tccatcccca ctgttcctta tccgattttt cgaagtgctg tttcaacact tctttagcct
    16801 gcttctcatc gagcttctgc tcggcgagat aaagccacag actacggaaa ggatcattgg
    16861 gatcgtcttg ataaaacgcc agcagatcat cttgcgctaa cttgtcacga ccgccgtaat
    16921 ataatgcgat cccgcgattc aagtgcgcgt agttgtaagt tggatcaagc tcaagtacag
    16981 aatcaaacgc ttcataggca gcatcaaaat tgcctgcctg cgttaaatat atgcctaagt
    17041 aattgaacac ttcaggcata tccggtcgga ttgccagcgc ttgcgaaaaa tcgttacgcg
    17101 ctaatgccct cagaccgaga ctatcataca acactccgcg ctcatataaa agctgtgcgc
    17161 gttcgtcatc ggttaaagcc cgactggcaa ggatttgttc catacgtgcc agaatcactt
    17221 cctgctgtaa agtcggttgc aatggtaccg cgaggacttc acttttacgc caggaagtat
    17281 tactgcatcc tgcaagcgta agtgctgtcg caacgaaaca ccagcgcaaa aaaggcttca
    17341 tttcccactc ccgaagacca cggttgaatg aacgtcctgt tcccggttgc taacaaggcg
    17401 tcctgcccgg ttaaaagccc cccgccgcag cggagggcaa atggcaacct tactcgccct
    17461 gttcagcagc cggagcttcc ggtgctgcag caggttgaga ctgctcagtc gcttctttaa
    17521 tgctcagacg gatacggccc tggcgatcaa cttccagaac tttcaccggt acttcctgac
    17581 ccatctgcag gtaatcggtc actttctcaa cgcgtttgtc agcgatttga gagatgtgga
    17641 ccagaccttc tttaccgccg ccgatggcaa caaatgcgcc aaagtcaacg atacgggtca
    17701 ctttaccagt gtagacgcgg cccacttcga tttctgcagt gatctcttcg atacgacgaa
    17761 tagcatgttt cgctttctcg ccgtcggtcg ctgcgatctt cacagtaccg tcatcttcga
    17821 tttcgatggt agtgccagtt tcgtcggtca gggcacggat aacagagccg cctttaccga
    17881 taacgtcttt gatcttgtcc gggttgatct tgatggtatg gatacgcggt gcgaactcag
    17941 agatatcgcc acgcggcgcg ttgatcgcct gttccattac gcccaggata tgcagacgcg
    18001 cacctttagc ctggttcagc gcaacctgca tgatctcttt ggtgatacct tcaattttga
    18061 tatccatctg caatgcagag ataccctcgc gggaacccgc aactttgaag tccatatcgc
    18121 ccaggtgatc ttcgtcgccc aaaatgtcag acagtacaac gtagttgtcg ccttctttca
    18181 ccagacccat tgcgataccc gcaacggcag ctttgatcgg cacacctgcg tccatcagcg
    18241 ccagagacgc gccgcacacg gaagccatag aagaggaacc gttggattca gtgatttcag
    18301 acacaacacg tacggtgtac gggaatttgt ccatatccgg catgactgcc agcacgccgc
    18361 gcttcgccag acgaccgtga ccaatttcac gacgcttcgg agaaccgacc atgccggttt
    18421 cgcctacgga gtacggaggg aagttgtagt ggaacaggaa ggtatcggta cgttcgccca
    18481 tcagttcatc aagaacctgc gcgtcacgag cagtacccag cgttgcggta accagcgcct
    18541 gcgtttcacc acgggtgaac agcgcagaac cgtgagtacg cggcagcacg ccagtacgca
    18601 catccagacc acggatcata tctttttcac gaccgtcgat acgcggttcg cctgccagta
    18661 cgcggctacg aacaacgttt ttctcgatag cgtgcagaat ttcacccagt tcgttttcgt
    18721 ccagggtttc gtcttcagca agcagcgtcg cgatggtttc agatttgatg acatcaacct
    18781 gcgcataacg ctcttgtttg tcggtgatgc ggtaagcatc gctcaggcga gcttcagcca
    18841 gtgcagcaac gcgcgcgttc agcgcttcgt ttaccggctc cggctgccag tcccaacgtg
    18901 gtttaccggc ttctttcacc agttcattga tgttctgaat aacaacctgc tgttgttcat
    18961 gaccgaacac tactgcgccc agcatctggt cttcgctcag cagttcagct tcagattcaa
    19021 ccatcagaac agcggcttca gtaccggcaa caaccagatc cagtttgctc tctttcagct
    19081 cgtcctgagt cgggttcagt acgtactggt cattgatgta acctacgcga gcagcaccaa
    19141 tcggaccatt gaacggaata ccagacagag acagtgctgc ggaagcacca atcatcgcga
    19201 cgatatccgg gttaacttgc gggttaacag aaaccacggt ggcgataacc tgaacttcgt
    19261 tgacgaagcc ttccgggaac agcgggcgaa tcgggcggtc aatcagacgc gcgatcaggg
    19321 tttcgccttc gcttggacga ccttcacgac ggaagaagct acccgggata cgaccagcag
    19381 cgtaggtacg ctcctgatag ttaacggtca gtgggaagaa gtcctgacct ggtttggctt
    19441 ttttctggcc aacaacggta acaaataccg cggtgtcatc catgctaacc ataacagcgg
    19501 cagtagcctg acgagccatc atgccggttt ccagagtcac ggtgtgttgg ccgtactgga
    19561 atttacgaac gatcggatta agcaatgtaa tatcctttct ctttcttaga cagtacctta
    19621 cggcactggt gttaataccc gatcttctgc gcatcctcgc gactaatgac aaccctaacc
    19681 cagctctatg tgggtaaagc ctctcattag ccgcgcgaac ctctgcaacg gaagatcatt
    19741 catagcaaca atacattagt ttccagtgaa ttgctgccgt cagcttgaaa aaaggggcca
    19801 ctcaggcccc cttttctgaa actcgcagga attagcgacg cagacccagg cgctcgatga
    19861 gctgggtgta acgtgctacg tctttacgtt tcaggtagtc gagcagttta cgacgctgag
    19921 aaaccatgcg cagcagacca cgacggctgt ggtgatcttt tttgtgctct gcaaagtggc
    19981 cctgcaggtg gttgatctgt gcagtcagca gtgctacctg aacttcggta gaaccggtgt
    20041 cgtttgcgtc acgaccaaac tcagaaacga ttttagctgt tgcttcagta cttagagaca
    20101 ttttaaaact ccaaagtata tagaatgaaa ggacgccgat ctctaattca gcgatcccag
    20161 tgtacgttac gcaaagtgtt aaacaattta cgcgacgtta agcggcagta ttctactcgt
    20221 agcgacctgt tatcgcaaga cggttaacat tacgccgggt attcaaccac caggcgacga
    20281 ggcgcgacgc ggccttcatc gtcaatttcg cccataccga taaacttgcc gttctcacct
    20341 tctgtaacgc gaaccagtcc ttccagcggc gcaccggatg tacgaactgg gttaccattt
    20401 ttgaagtaaa cagaagacgt taacggaaga ttcaccaccg ggtagtccga agctggactg
    20461 tccattggca tcagtaatgg atcaagtaac tccgcagccg gaatatcctg ctgttcggct
    20521 tgttcgacca gttcacgcag atgttccagg gtcaccatcc gttcaaccgg atatttactt
    20581 accgccagac gacgcaggta aataacatgc gcgccacaac cgagtttttc acccaggtca
    20641 tcaatgatgg tgcggatata agtgcctttt gagcagtgaa tttccagctc cagctcattg
    20701 ccttcgtggc gaataaacag caattcataa acggtaatcg ggcgcgcttc acgcggtact
    20761 tcaatgccct gacgcgcata ttcgtacagt tttttaccct gatatttcag tgctgaatac
    20821 atcgaaggga tctgttcgat atcgccacgg aaagtatcca gcgccgccgc cagttgctct
    20881 gcgctaaagg ttaccggacg ttcttcaacg atttgtccgt cggcatcaga agtatcggta
    20941 cgctgtccaa gacgcgcaat gacccgatag cgtttgtcgg agtccagcag atactgggaa
    21001 aacttcgtcg cttccccgaa gcaaattggc aacatgccag ttgccagcgg gtccagagca
    21061 ccggtatgcc cggcacggtt ggcgttataa atccgtttca ctttttgcag cgcatcattg
    21121 ctggacatac cctgcggttt atccagcaac aaaacgccgt taatgtcgcg accgcgacga
    21181 cgaggacgac tcattagtcc tccttgctgt cgtccgggtt aacacgacgt tcttcgtcat
    21241 gtttgaccac gctggtcacc aggtttgaca tgcgcatccc ttcaaccaga gagttgtcgt
    21301 agaagaaggt cagttccggc acgatacgca ggcgcatcgc tttccccagc aggctgcgga
    21361 tgaaaccaga agcttcttgc aacgctttga tgcccgcttt aaccgcgtct tcatctttgt
    21421 cgttgaggaa cgtcacatat actttggcat acgccaggtc gcgagacatt tcgacaccgg
    21481 aaacggtggt catcatgccc aggcgaggat ctttaatttc acgctgcagg atgagagcga
    21541 tctctttttg catttcctgc gctacgcgct gcgggcgacc aaattctttc gccataataa
    21601 attctcctga caaaaaaggg gctgttagcc cctttttaaa attaatttca ggtggaaggg
    21661 ctgttcacgt tggcctgata agacgcgcca gcgtcacatc aggcaatcca tgccggatgc
    21721 ggcgtaaacg ccttatcccg catggaaccc taaaaacctt aagcgatggt acgttggatc
    21781 tcgatgattt cgaatacttc gatcacatcg ccagtgcgga cgtcgttgta gttcttaacg
    21841 ccgataccac attccatacc gttacggact tcgttaacgt catctttgaa gcggcgcagg
    21901 gactccagct cgccttcgta gataaccacg ttgtcacgca gaacgcggat cgggttgtga
    21961 cgtttaacca caccttcggt aaccatacag cctgcgatgg caccaaattt cggcgatttg
    22021 aacacgtcac gaacttccgc cagaccgata atctgctgtt tcagttccgg agacagcata
    22081 ccgctcatcg ccgctttcac ttcgtcaatc aggttataga tgacggagta gtaacgcaga
    22141 tccaggcttt ccgcttcaat cactttacgt gcagaggcat cagcacgtac gttgaagcca
    22201 accaggatgg cgttggacgc cgcagccagg gtggcgtcgg tttcggtgat accacctacg
    22261 ccagaaccga tgatcttcac tttaacttcg tcagtagaca gtttcagcaa ggagtcggag
    22321 atcgcttcca cagaaccctg tacgtctgcc ttcaggacga tgttcacttc gtgaacttcg
    22381 ccttcggtca tgttggcgaa catgttctcg agtttagatt tctgctgacg cgccagttta
    22441 acttcgcgga atttaccctg acgatacagt gcaacttcac gcgctttctt ctcgtcacgt
    22501 acaacggtaa cttcatcacc cgcagccggt acgccggaca ggccgaggat ttccaccgga
    22561 atggacggac ccgcttccag cacttcctga cccagttcgt tacgcatcgc acgaacacga
    22621 ccgtattcga agccacacag aacgatatcg cccttgtgca gagtaccttc acgtaccaga
    22681 acggtagcaa ccggaccacg acctttatcg aggaaggatt cgataaccgc accgctcgcc
    22741 atacctttac gtaccgcttt cagctccaga acttccgcct gcagcaggat agcgtccagc
    22801 agttcatcga tgccggtacc cgctttcgca gatacgtgta cgaactggct ttcaccgccc
    22861 cactcttctg gcaggatgcc atactgggag agttcgttct taacacgatc cggatcggct
    22921 tctggtttat caatcttgtt cactgcaacc accaccggta cctgcgccgc tttcgcgtgc
    22981 tggattgctt cgatggtctg cggcatcacg ccgtcgtcgg cagcaacaac caggactacg
    23041 atgtccgttg cctgcgcacc acgagcacgc attgaagtaa acgcggcgtg ccctggggtg
    23101 tccaggaagg tgatcatgcc gttttcagtt tcaacgtggt atgcaccaat gtgctgggta
    23161 atgccgcccg cttcgccaga ggccactttc gttgaacgaa tgtagtccag cagagaggtt
    23221 ttaccgtggt caacgtgacc catgatggtc acaaccggcg cgcgcggttc agccgcagcc
    23281 cccgtgtcac ggtcgctcat taccgcctct tccagctcgt tttcacgacg caggataact
    23341 ttgtggccca tctcttcagc aaccagctgt gcggtttcct gatcgataac ctggttgatg
    23401 gttgccattg cgcccagttt catcatcgct ttgatgacct gagagccttt aaccgccatc
    23461 ttgttcgcca gttcgccaac ggtgatggtt tcgccgatca caacgtcacg gttaacggcc
    23521 tgagctggct tctggaagcc ttgctgcagg gaagaacctt tacgttttcc gcctttacct
    23581 ccacgtactg ctgcgcgagc ttcttcacga tcagcttttg attcagcgtg tttgttgcct
    23641 ttcttcggac gcgctgcttt cgcgttacga ccacggccac ggccgccttc gacttcacga
    23701 tcgctttcgt cttctgcctg gcgagcatgt tgagaagtag tgacgtgata atcgctggaa
    23761 tcttcagtcg gttccgcgtt atcagtccat ttgttttctt ccgccatacg acgtgcttct
    23821 tcagcaacgc gacgtgcttc ttcttcgagt ttacgacgcg cttcttcttc agctttacgc
    23881 ttgagctctg cagcttcctg ctcacggcgg gctttttcag cctgggcgtt tttagtcata
    23941 tcgtcttgtt gattgctcac tttgtctttt tccgcagctt cacgtttcgc ttgttcagca
    24001 gcttcacgct tagcttgttc tgcggcctca cgttcagctt tttgttgcgc ctcgcgttta
    24061 gccgattctt ctgcctcacg acgggcttgc tcttccgctt cacgctgcgc ttgctcttcc
    24121 gctgcaaggc gttcagcctc ttgcggatcg cgtttcacaa aggtgcgttt cttgcggact
    24181 tcgatttgta ccgatttgct ttttccaccg gtaccaggaa tgttaagggt gctgcgtgtt
    24241 ttacgttgca gcgtcaattt gtccgggcct gaatttttct gattcaggtg gtcaatcaaa
    24301 gtctgtttct cttttgcgga cacagagtcg tcagcagact tccggatacc tgcatcagca
    24361 aattgctgta ccaggcgttc cacggaggtc tgtcgctctg cggccagcgt tttaatcgtt
    24421 acatctgtca tgctgttcct tcctgctaca gtttattacg cttcgtcacc gaaccagcaa
    24481 atattacggg cagccataat cagtgctccg gctttttcgt cggtcacccc ttcgatatca
    24541 gccagatcat caatgccctg ttcggcgaga tcttccagcg tacaaacgcc acgggcggcc
    24601 agtttgaatg ccaaatcacg atctatccct tcaaggttca gcagatcgtc agccggtttg
    24661 ttatcaccga ggctttcttc ctgggcctgt gcaatggtgg ccagtgcatt tttagcacgc
    24721 tcgcgcagtg cttcaacggt cggctcatca aggccttcga tttccaacag ctctttcatc
    24781 ggcacatagg ccagttcttc cagcgtcgag aagccttctt ctaccagaac agtcgcgaag
    24841 tcttcgtcga tgtcgagata tttggtgaag gtgtcgatcg ctgcgtgcgc ttccgcctga
    24901 tgcttagcct gcaggtcgtc aacggtcatc acgttgagtt cccaaccgct cagctgcgaa
    24961 gccagacgca cgttctgacc gttacggcca atcgcctgcg ccaggttacc ggcttcaacg
    25021 gcgatatcca tggtgtgttt atcttcatcc accacgatag aagcaacgtc tgccggtgcc
    25081 attgcgttaa tcacaaactg cgccgggtta tcatcccaca ggacgatatc gatacgctcg
    25141 ccgcccagtt cagtagaaac cgcctgaaca cgcgcgccac gcatacctac acaggcacct
    25201 accggatcga tacgtttatc gttggttttc accgcgattt tcgcacgaga acccggatcg
    25261 cgagccgctg ctttaatttc aatcacttct tcgccgattt ctggcacttc aatacggaac
    25321 agttcgatca gcatttccgg cttggaacga gtgacgaaca gttgcgcgcc acgcgcttcc
    25381 gggcgaacgg aatagagcac gccacgaacg cggtcgccag ggcggaagtt ttcacgcggc
    25441 agcatatctt cgcgcaggat cacggcttca gcattgttgc ccagctccag agagatgttg
    25501 tcgcggttta cttttttcac cacgccggtg atgatttcac cttcgtgttc acggaactga
    25561 tcaaccacca tcgcacgttc ggcttcacgc actttctgca cgataacctg ttttgccgtc
    25621 tgggtagtga tacggtcaaa ggtaacagac tcaatctgat cttcaacgta atcgcccagg
    25681 ttcaggcttt catcttcata acgtgcggct tcaagggtga tttccttggt cggctgggtg
    25741 acttcatcaa caactaacca gcgacggaag gtgtcaaaat caccgctttt gcgatcgatc
    25801 tgtacgcgga cgtcgatctc ttgttcatat tttttctttg ttgctgtcgc cagcgcgctt
    25861 tccaatgctt cgaaaatctt ctcgcgaggt agcgcctttt cattggatac ggcttcaact
    25921 acagccaaaa tttctttgtt catcgcgggc ttttcacctc atccagacta ttaaaagtgg
    25981 ggaaccaggt tcgccttctg gatattactc agcgcgaaca cttcatcttt accttcgacg
    26041 gtaactgtga tcatttcacc gtctaccgct ttgataacgc cctgccattt acgacggttt
    26101 tgtaccgcca tacggagaac cagagtcacc tcttctccga caaaacgggc gtagtgttca
    26161 gccgtgaaca gtgggcgatc gagacccggt gaggagactt ccaggttata agcaacggtg
    26221 atgggatctt caacatccag cacagcactt acctggtggc tcacatcagc acaatcatca
    26281 acattgatgc catcttcact atcaatatag atgcgcagtg tggatgtgcg accgcgaata
    26341 aattcgatgc caaccagttc aaaacccagg gcctcaactg gcgcagtaat catctctgtt
    26401 aatttttgct ctaatgtgga caagcccacc cccaagacat aaaaaaaggg cctaaagccc
    26461 agttattctg tagtcagata acaaaaaacc ccgataaatc ggggctttat ataactgaac
    26521 cctataaccg caactgcggt ctggagcact ttccagaagg attttttcaa atcccactac
    26581 gaaggccgaa gtcttcacag tatatttgaa aaaggactct aagggaaagt ggttgcgggg
    26641 gccggatttg aaccgacgac cttcgggtta tgagcccgac gagctaccag gctgctccac
    26701 cccgcgcctg aaacgcggca aattctactc gttttgggta aaagatgcaa atactgctgg
    26761 gatttggtgt accgagacgg gacgtaaaat ctgcaggcat tatagtgatc catgccacat
    26821 tttgtcaacg tttattgcta atcacgtgaa tgaatatcca gttcactttc atttgttgaa
    26881 tacttttgcc ttctcctgct ctcccttaag cgcattattt tacaaaaaac acactaaact
    26941 cttcctgtct ccgataaaag atgattaaat gaaaactcat ttattttgca taaaaattca
    27001 gtgagagcgg aaatccaggc tcatcatcag ttaattaagc agggtgttat tttatgacga
    27061 cgattctcaa gcatctcccg gtaggtcaac gtattggtat cgctttttct ggcggtctgg
    27121 acaccagtgc cgcactgctg tggatgcgac aaaagggagc ggttccttat gcatatactg
    27181 caaacctagg ccagccagac gaagaggatt atgatgcgat ccctcgtcgt gccatggaat
    27241 acggcgcgga gaacgcacgt ctgatcgact gccgcaaaca actggtggcc gaaggtattg
    27301 ccgctattca gtgtggcgca tttcataaca ccaccggcgg cctgacctat ttcaacacga
    27361 cgccgctggg ccgcgccgtg actggtacca tgctggttgc tgcgatgaaa gaagatggcg
    27421 tgaatatctg gggtgacggt agcacctata aaggaaacga tatcgaacgt ttctatcgtt
    27481 atggtctgct gaccaatgct gaactgcaga tttacaaacc gtggcttgat actgacttta
    27541 ttgatgaact gggcggccgt catgagatgt ctgaatttat gattgcctgc ggtttcgact
    27601 acaaaatgtc tgtcgaaaaa gcctactcca cagactccaa catgcttggt gcaacgcatg
    27661 aagcgaagga tctggaatac ctcaactcca gcgtcaaaat cgtcaacccg attatgggcg
    27721 tgaaattctg ggatgagagc gtgaagatcc cggcagaaga agtcacagta cgctttgagc
    27781 aaggtcatcc ggtggcgctg aacggtaaaa cctttagcaa cgacgtagaa atgatgctgg
    27841 aagctaaccg catcggcggt cgtcacggcc tgggcatgag cgaccagatt gagaaccgta
    27901 tcatcgaagc gaaaagccgt ggtatttacg aagctccggg gatggcactg ctgcacattg
    27961 cgtatgaacg tctgttgacc ggtattcaca acgaagacac cattgagcag tatcacgcgc
    28021 atggtcgtca gttgggccgt ctactgtacc aggggcgttg gtttgactcc caggcgctga
    28081 tgctgcgtga ctctctgcaa cgctgggttg ccagccagat cactggtgaa gttaccctgg
    28141 agctgcgccg tgggaacgat tattcaatcc tgaataccgt ctcagagaac ctgacctaca
    28201 agccagagcg tctgacgatg gaaaaaggcg actcggtgtt ctcgccagat gatcgtattg
    28261 gtcaattgac catgcgtaat ctggatatca ctgatacccg agagaaactt tttggttatg
    28321 ccaaaactgg cctgctctcc tcctctgcca cttcaggcgt gccgcaggtg gagaatatgg
    28381 aaaacaaagg ccagtaattc gacatcaacc ctgcccttca gggggggggt taccttgctt
    28441 atcctctgta aactcctttc tgaacatcac ataatcgaaa acatcatggt ttgcatccac
    28501 aacccgtgag tctcctttat agtgtgcaat cacttcctca agcgtttgcg gctgttccgg
    28561 ctttgttacc cccatccacg cattaataag gtaattattg taagctgtcg aaaagatgtt
    28621 gttttccgtt gtgcgatcca cgccatcccc aagaacgggg ctataccaga taaacatcgg
    28681 gacatgatat gcctgctggc tagcctccct gcctccatga aaatagacgt tcttcttcgt
    28741 agggtcacgt tccaggccgt ggtcggcaaa atacatgacc gaggcgcggc gatcttttaa
    28801 taattcaaaa acctgaccta gcaaactatc tgtgtaatga atggagttgt catagcaggc
    28861 atcctgatcg tcctgcggtt gaaacacggc gctggattgc ggataggcgc tacaagccgg
    28921 ttcatggctt ccatttaaat gaagaacaat cagtttcttt tgctgcgtat tttgctgtaa
    28981 tgcttgcgat aaatgcggca acaacaattc atcaaatcct ctgacataaa ctgtttccat
    29041 ggcgcgcatg gcgatactgg taactgctgt accattctgc cgaaaagcgg attgcgagct
    29101 tagccagaaa gtctgaaatc ctgcttgatt agccatatta ataatgttgt cggggtaatt
    29161 atgaatgtca tgactcaaaa cagaatcagc agttaaagaa aggggaaccg acagcgcagt
    29221 gtaaggtgcg ccgcttattg cttgattaaa cagtttgatc tgttttcttt gtgcttcaac
    29281 ttgcggtgtc gtagagcgtg tatatccata caaagacata ttgtcgacac gtacagactc
    29341 ccccacaatc aacacgtagg tatcaatacc tgtatccctg actgataatt gaaaatacgg
    29401 caccgtgttt gcaattgaga gtaa
//
LOCUS       DADMHM010000031        29306 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.032, whole genome shotgun sequence.
ACCESSION   DADMHM010000031 DADMHM010000000
VERSION     DADMHM010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 29306)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29306)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29306
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.032"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            285..1943
                     /locus_tag="JN125_001195"
     CDS             285..1943
                     /locus_tag="JN125_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent endonuclease"
                     /protein_id="HAY8871041.1"
                     /translation="MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTL
                     LLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTP
                     CTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLR
                     DARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEH
                     YFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQA
                     KGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVE
                     HVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWV
                     INELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATV
                     RSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENVPMNLRKIISKAI
                     HRSSKPDLAIEVAIEAGRRGVDSVPTLLKKMFSRVLWLARGRAD"
     gene            complement(1940..2896)
                     /locus_tag="JN125_001196"
     CDS             complement(1940..2896)
                     /locus_tag="JN125_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001322270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF535 domain-containing protein"
                     /protein_id="HAY8871042.1"
                     /translation="MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQ
                     KFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEAL
                     RYHYALLRGCMSAEEFSLYLNTPGMQLAKLEGKNGEQFTLELTMMISMDKEGDSTILF
                     RNSEGIPLAEITFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVM
                     EAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHY
                     RLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG"
     gene            3047..4162
                     /gene="macA"
                     /locus_tag="JN125_001197"
     CDS             3047..4162
                     /gene="macA"
                     /locus_tag="JN125_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308991.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrolide transporter subunit MacA"
                     /protein_id="HAY8871043.1"
                     /translation="MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPG
                     DLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIK
                     EVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDTAATEMAVKQAQI
                     GTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLA
                     DMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYY
                     ARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETR
                     EREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ"
     gene            4159..6105
                     /gene="macB"
                     /locus_tag="JN125_001198"
     CDS             4159..6105
                     /gene="macB"
                     /locus_tag="JN125_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrolide ABC transporter ATP-binding
                     protein/permease MacB"
                     /protein_id="HAY8871044.1"
                     /translation="MTPLLELKDIRRSYPAGDEQVEVLKGITLDIYAGEMVAIVGASG
                     SGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLT
                     AEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALM
                     NGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRD
                     GEIVRNPPAIEKVNVAGGTEPVVNTVSGWRQFVSGFNEALTMAWRALAANKMRTLLTM
                     LGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYD
                     DLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQ
                     EQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVL
                     RVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMD
                     GVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARAS
                     DVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTAT
                     GILFGWLPARNAARLDPVDALARE"
     gene            complement(6178..6402)
                     /gene="cspD"
                     /locus_tag="JN125_001199"
     CDS             complement(6178..6402)
                     /gene="cspD"
                     /locus_tag="JN125_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold shock-like protein CspD"
                     /protein_id="HAY8871045.1"
                     /translation="MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKA
                     GQSVQFDVHQGPKGNHASVIVPVEVEAAVA"
     gene            6725..7045
                     /gene="clpS"
                     /locus_tag="JN125_001200"
     CDS             6725..7045
                     /gene="clpS"
                     /locus_tag="JN125_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adapter ClpS"
                     /protein_id="HAY8871046.1"
                     /translation="MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVI
                     DVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCT
                     LEKA"
     gene            7076..9352
                     /gene="clpA"
                     /locus_tag="JN125_001201"
     CDS             7076..9352
                     /gene="clpA"
                     /locus_tag="JN125_001201"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpA"
                     /protein_id="HAY8871047.1"
                     /translation="MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREAL
                     EACSVDLVALCQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNE
                     VTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSE
                     EQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGV
                     GKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ
                     DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKD
                     RALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDR
                     HLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLK
                     NLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQL
                     SKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEI
                     EKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDN
                     STDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEV
                     SQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVERDKEKN
                     ELTYGFQSAQKHKAEAAH"
     gene            complement(9696..9783)
                     /locus_tag="JN125_001202"
     tRNA            complement(9696..9783)
                     /locus_tag="JN125_001202"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9747..9749),aa:Ser,seq:gga)
     gene            complement(10037..10255)
                     /gene="infA"
                     /locus_tag="JN125_001203"
     CDS             complement(10037..10255)
                     /gene="infA"
                     /locus_tag="JN125_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001040186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HAY8871048.1"
                     /translation="MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNY
                     IRILTGDKVTVELTPYDLSKGRIVFRSR"
     gene            complement(10540..11244)
                     /gene="aat"
                     /locus_tag="JN125_001204"
     CDS             complement(10540..11244)
                     /gene="aat"
                     /locus_tag="JN125_001204"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HAY8871049.1"
                     /translation="MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQR
                     GIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGC
                     ASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFS
                     RMENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGR
                     LPNNFWVPRCLFSPQE"
     gene            complement(11286..13007)
                     /gene="cydC"
                     /locus_tag="JN125_001205"
     CDS             complement(11286..13007)
                     /gene="cydC"
                     /locus_tag="JN125_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter ATP-binding
                     protein/permease CydC"
                     /protein_id="HAY8871050.1"
                     /translation="MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLS
                     ASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSK
                     LLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMMVTIGLSFLDF
                     TLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGA
                     SDRYRTQLENTEIQWLEAQRRQSELTALSQVIMLLIGALAVILMLWMASGGVGGNAQP
                     GALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTQTRVA
                     DRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDP
                     QQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAESL
                     RRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDAT
                     TESQILELLAEMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRY
                     YQFKQGL"
     gene            complement(13008..14774)
                     /gene="cydD"
                     /locus_tag="JN125_001206"
     CDS             complement(13008..14774)
                     /gene="cydD"
                     /locus_tag="JN125_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/glutathione ABC transporter
                     permease/ATP-binding protein CydD"
                     /protein_id="HAY8871051.1"
                     /translation="MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWF
                     MARILQHMIMENIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQV
                     LDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFP
                     SNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIF
                     GRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGEL
                     DFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAH
                     PQRGEVELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSL
                     LNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDA
                     SEHELQAALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARVLLNPCSLLL
                     LDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGRIIEQGR
                     YAELSVAGGPFATLLAHRQEEI"
     gene            complement(14897..15862)
                     /gene="trxB"
                     /locus_tag="JN125_001207"
     CDS             complement(14897..15862)
                     /gene="trxB"
                     /locus_tag="JN125_001207"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HAY8871052.1"
                     /translation="MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQL
                     TTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNG
                     EYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVE
                     EALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRMLEEVTGDQMGV
                     TGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQ
                     TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK"
     gene            16407..16901
                     /gene="lrp"
                     /locus_tag="JN125_001208"
     CDS             16407..16901
                     /gene="lrp"
                     /locus_tag="JN125_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001591745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-responsive transcriptional regulator
                     Lrp"
                     /protein_id="HAY8871053.1"
                     /translation="MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTP
                     CLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEE
                     IQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLV
                     IKTR"
     gene            17036..21007
                     /gene="ftsK"
                     /locus_tag="JN125_001209"
     CDS             17036..21007
                     /gene="ftsK"
                     /locus_tag="JN125_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HAY8871054.1"
                     /translation="MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSF
                     NPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWCHQS
                     SDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHS
                     SGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYE
                     DDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDEE
                     EIIYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWA
                     APVEPVTQTPPVTSVDVPPSQPTVAWQPVPGPQTGEPVIAPAPEGYPQQPQYAQPAVQ
                     YNEPLQQPYYAPAAEQPVQQPYYATAPEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTF
                     APQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEE
                     KRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKAT
                     LATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQ
                     RAAEEKAREARRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNA
                     EDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFT
                     PIVEPVQQPQQLVAPQQQYQQPQLPVAPQQQYQQPQQPVAPQQQYQQPQQQVAPQPQY
                     QQPQQPVAPQQQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALE
                     QMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTV
                     AVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVV
                     ADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIP
                     HLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPD
                     PYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHL
                     VLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPN
                     STLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPL
                     FDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPP
                     PFD"
     gene            21162..21773
                     /gene="lolA"
                     /locus_tag="JN125_001210"
     CDS             21162..21773
                     /gene="lolA"
                     /locus_tag="JN125_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010354356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HAY8871055.1"
                     /translation="MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQK
                     VTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWL
                     KDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQ
                     FSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK"
     gene            21784..23127
                     /locus_tag="JN125_001211"
     CDS             21784..23127
                     /locus_tag="JN125_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HAY8871056.1"
                     /translation="MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRA
                     IEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNR
                     NAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVY
                     LLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMM
                     ADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALY
                     WYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIA
                     QAIVYLACAPKSNAVYTAFKAALADVRERPDYDVPVHLRNAPTKLMKEMGYGQEYRYA
                     HDEANAYAAGEVYFPREIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR"
     gene            23218..24510
                     /gene="serS"
                     /locus_tag="JN125_001212"
     CDS             23218..24510
                     /gene="serS"
                     /locus_tag="JN125_001212"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000887397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HAY8871057.1"
                     /translation="MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKT
                     ENLQAERNSRSKSIGQAKARGEDIESLRLEVNKLGEELDAAKAELDALQAEIRDIALT
                     IPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGS
                     RFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLF
                     HTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGR
                     DTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMG
                     FGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSG
                     LAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG"
     gene            24749..27193
                     /gene="dmsA"
                     /locus_tag="JN125_001213"
                     /pseudo
     CDS             24749..27193
                     /gene="dmsA"
                     /locus_tag="JN125_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415414.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfoxide reductase subunit A"
     gene            27204..27821
                     /gene="dmsB"
                     /locus_tag="JN125_001214"
     CDS             27204..27821
                     /gene="dmsB"
                     /locus_tag="JN125_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethylsulfoxide reductase subunit B"
                     /protein_id="HAY8871058.1"
                     /translation="MTTQYGFFIDSSRCTGCKTCELACKDYKDLTPEVSFRRIYEYAG
                     GDWQEDNGVWHQNVFAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGC
                     RYCHMACPYGAPQYNETKGHMTKCDGCYDRVAEGKKPICVESCPLRALDFGPIDELRK
                     KHGDLAAVAPLPRAHFTKPNIVIKPNANSRPTGDTTGYLANPKEV"
     gene            27823..28686
                     /locus_tag="JN125_001215"
     CDS             27823..28686
                     /locus_tag="JN125_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase anchor subunit"
                     /protein_id="HAY8871059.1"
                     /translation="MGSGWHEWPLMIFTVFGQCVAGGFIVLALALLKGDLRAEAQQRV
                     IACMFGLWVLMGIGFIASMLHLGSPMRAFNSLNRVGASALSNEIASGSIFFAVGGIGW
                     LLAMLKKLSPALRTLWLIVTMVLGVIFVWMMVRVYNSIDTVPTWYSIWTPMGFFLTMF
                     MGGPLLGYLLLSLAGVDGWAMRLLPAISVLALVVSGVVSVMQGAELATIHSSVQQAAA
                     LVPDYGALMSWRIVLLAVALCLWIAPQLKGYQPAVPLLSVSFILLLAGELIGRGVFYG
                     LHMTVGMAVAS"
     gene            complement(28721..29302)
                     /locus_tag="JN125_001216"
                     /pseudo
     CDS             complement(28721..29302)
                     /locus_tag="JN125_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005135793.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
BASE COUNT         7262 a         7211 c         7911 g         6922 t
ORIGIN      
        1 tgatttaggg caacagcggg ttgccccata tagtcatttg tctgattgac agtgtagtgc
       61 acgcaaaaga tttaatcctt taggcgtaat aaaaaataat atatcatgct aattatttga
      121 ttttgttgtt tttgcagact tatcagcaag agggagtata acgcgattat tcgctcattt
      181 ttcagacatt tgccatgctt aaatgtgatg tcatcacgta ttagcaaggc ctttcccgtt
      241 atactgccag cgtaaaggat aagtcacata tttctggagg ggatatgatt cttgagcgcg
      301 ttgaaattgt gggttttcgc ggtatcaacc gtttgtcgtt gatgctggaa caaaacaacg
      361 tcctgattgg ggagaacgcg tggggtaaat ccagcttgct ggacgcctta accctgctgc
      421 tatcgccaga atcagatctc taccattttg agcgcgacga tttctggttc ccgccgggag
      481 atatcaacgg gcgagaacat catctgcata ttattttgac cttccgcgaa tcgctgccag
      541 gccgacatcg ggttcgccgt tatcggccgc tggaagcgtg ctggacgcca tgcaccgatg
      601 gctatcaccg tattttttat cgtctggaag gggagagtgc ggaagacggc agcgtgatga
      661 cactgcgcag ttttctcgat aaagacggac atccgattga tgtcgaggat attaacgatc
      721 aggcacgcca tctggtgcgt ttaatgccgg tgctgcgctt gcgtgatgcc cgttttatgc
      781 gccgtattcg taacggcacg gtgccaaatg tccctaatgt ggaagtcacc gcgcgccagc
      841 tcgatttcct cgcccgtgag ttatcctcac atccgcaaaa tctctctgat gggcagattc
      901 gtcagggact ttccgcaatg gtacagctgc ttgagcatta tttctctgag cagggggccg
      961 gacaggcgcg atatcgttta atgcggcggc gggccagcaa tgagcaacga agctggcgct
     1021 atctggacat catcaaccgg atgattgacc gacctggagg gcgctcgtat cgggttattt
     1081 tgctcggcct gtttgctact ttattgcagg caaaaggcac attgagactg gataaagacg
     1141 cgcgtccatt gttgctgatc gaagatccag aaacccgttt acaccccatt atgctttcag
     1201 ttgcctggca tctgttgaat cttctgccat tgcagcgcat tgccaccacc aactcgggtg
     1261 agttgctttc gttaacgccg gtagagcatg tttgccgact ggtacgtgag tcctcgcgcg
     1321 ttgccgcctg gcgtctgggg ccgagtggct tgagtaccga agatagccga cgcatatcct
     1381 ttcacattcg ttttaaccgt ccgtcatcgc tgtttgcacg ctgctggttg ctggtggaag
     1441 gggaaacgga aacctgggtt atcaatgaac tggcgcgtca gtgcggacat cattttgatg
     1501 ccgaagggat caaggtcatt gagtttgccc agtccgggct aaagccactg gttaaatttg
     1561 cccgccgaat ggggattgaa tggcatgtac tggtcgatgg cgatgaagca gggaagaaat
     1621 atgccgctac ggtacgcagc ctgttgaata acgatcggga agccgaacga gaacatttaa
     1681 cggcgttacc ggcgctggat atggaacatt ttatgtatcg ccagggattt tccgatgtgt
     1741 tccaccgcgt ggcgcaaatc ccggaaaatg taccgatgaa tctacgcaaa attatctcga
     1801 aagcgatcca tcgctcttcc aaacccgatc ttgccattga agtggcaata gaggcaggac
     1861 gtcgtggtgt ggactccgta ccgacgctgc tgaaaaaaat gttctcacgc gtgctgtggc
     1921 tggcgcgcgg tcgcgcggat taaccgcgaa acatcgtggc catttgtggc tgaatagcgt
     1981 cgagcatctc atagcgccga cggtattcag cccgtttttt actggcgatt tcggcaatct
     2041 cttttcgtgc tatctgtgct ggaaggcggt aatggcgttc agcatcacat acgccgccaa
     2101 ccgattccca gaaagcgttg taatcagcgt ggatcttgcc ttctttatcg cgataacgca
     2161 ggctgcggta aatatgcgtt tcattgctga cggcaataat ctgctctacc tgcaaacgtt
     2221 gggcaaacag acaggccgct tccatcacga ggcgtttggg aaatagcccg tggcaggctt
     2281 tcgtcgcatt ctggatttcc tgatgtggaa tttcccattt tgcgccttgc agtccgccaa
     2341 taaacatcgt tcttttcccc tgatattcac acagggtaaa cgtgatctct gccagaggaa
     2401 taccttcgct gttgcgaaac aggattgtgc tgtcaccttc tttatccatt gagatcatca
     2461 tggtcagctc aagcgtgaac tgctcgccgt ttttgccttc cagcttcgcc agttgcatcc
     2521 cgggggtatt caaatataag ctgaattctt ccgccgacat acatccgcgg agtaacgcat
     2581 aatggtaacg taacgcctcc agcaattgct tacggctaag attcgccgca aggtaagggc
     2641 gatgcagacg cacaggcagt cgcggctggc gcgttaacaa cacattgaga ttaggccagt
     2701 gggaaagttc gttcatccac tcaacgctta aacgcggcat aatcaacgag cgcagcaaaa
     2761 atttctggcg aaaactacgg cgatgccaga atttacccgg ccgacactgt ccacgtgcca
     2821 gactaagaaa aagtgacagg ctgctgagag attcagatgg cgtaaaggtc cgttcagtta
     2881 gctgcgacat attcatgaaa tcaatggtta tacatgacgt cgatttcacc attgcgtatc
     2941 ttaaccaaac atcaatagtg tgattactaa cgtaaatttt agggttttgt tgatatttcg
     3001 ttgaagttaa tgacccggat tggcatatgg agtattcaga atatttatga aaaagcggaa
     3061 aaccgtgaag aagcgttacg ttattgcgct ggtgatagtc atcgccggac tgattacgtt
     3121 atggagaatt cttaacgcac ccgtgccgac ttatcagaca ctgattgtgc gccccggtga
     3181 tttacagcaa agcgtgctgg cgaccggaaa gctggacgcg ctgcgtaagg ttgatgtggg
     3241 cgcgcaggtc agcggtcagt tgaaaactct gtcggtggcg attggcgata aagtaaaaaa
     3301 agaccagctt ttaggggtta ttgatcctga acaggctgaa aaccagatta aggaggtcga
     3361 agcaacgctg atggagctac gtgcgcagcg gcagcaggcg gaagcggagc tgaaactggc
     3421 gcgggtgacg tattcccgtc agcaacgtct ggcacaaacg caggcggttt cacagcagga
     3481 tctcgacacc gccgcgacgg agatggctgt gaaacaggcg caaattggca ccattgacgc
     3541 gcaaatcaag cgcaatcagg cttctctcga tacggctaaa accaatctcg attacactcg
     3601 catcgttgcc ccgatggccg gggaagtcac gcaaatcacc actctgcaag gccagacggt
     3661 gattgccgca caacaagcac cgaacattct gacgctggca gatatgagca ccatgctggt
     3721 aaaagcgcag gtttctgaag cggatgtaat ccacctgaag ccggggcaaa aagcttggtt
     3781 tacggtgctt ggcgatccac tgacgcgcta cgaggggcaa atcaaggatg tactaccgac
     3841 gccggaaaag gttaacgacg ctattttcta ttacgcccgt tttgaagtcc ccaaccccaa
     3901 tggtttgctg cggctggata tgactgcgca agtgcatatt cagctcaccg atgtgaaaaa
     3961 tgtgctgacg atccctctgt cggcgttagg cgatccggtt ggcgataatc gttataaagt
     4021 caaattgttg cgtaatggtg aaacacgcga gcgtgaagtg acgattggcg cacgtaacga
     4081 taccgatgtt gagattgtca aagggctgga agcgggcgat gaagtggtga ttggtgaggc
     4141 caaaccagga gctgcacaat gacgcctttg ctcgaattaa aggatattcg tcgcagctat
     4201 cctgccggtg atgagcaggt tgaggtgctg aagggcatca ccctcgatat ttatgccggt
     4261 gagatggtag cgattgttgg cgcttcaggt tccggtaaat cgaccctgat gaatattctc
     4321 ggctgtctgg ataaggccac cagcggcacc tatcgcgtcg ccggtcagga tgttgccaca
     4381 ctggacgccg atgcgctggc gcaactgcgc cgcgagcatt tcggctttat tttccagcgt
     4441 taccatttac tttcgcattt aaccgccgag cagaacgttg aagtacccgc cgtctatgcc
     4501 ggtcttgagc ggaaacagcg gctgcttcgc gcccaggagt tactgcaacg actggggctg
     4561 gaagaccgta cagagtatta tccggcacag ctttcgggtg gtcagcaaca gcgcgtcagc
     4621 atcgcgcggg cattgatgaa cggcggtcag gtaattcttg ccgatgaacc aaccggcgca
     4681 ctggacagcc attctggcga agaggtgatg gcgatcctgc atcagctgcg cgatcgcggg
     4741 catacggtga ttatcgtcac ccacgatccg caggtcgctg ctcaggccga gcgggtgatc
     4801 gaaattcgcg acggcgaaat tgtgcgcaat cctcccgcca ttgaaaaagt gaatgttgct
     4861 ggcgggacgg agcctgttgt caacacggtg tctggctggc ggcagtttgt cagcggtttt
     4921 aacgaggcgc tgacgatggc atggcgggcg ctggcagcga ataaaatgcg tactttactg
     4981 accatgctgg ggattattat cggtattgcg tcggtggttt ccattgtcgt ggtgggtgac
     5041 gccgccaaac aaatggtgct ggcggatatt cgttctattg gtacgaatac tattgatgtc
     5101 tatcccggga aagattttgg cgatgacgat ccgcaatatc agcaggcgct gaagtacgac
     5161 gacttaatcg ccatccaaaa acaaccgtgg gtcgcctcag ccacacctgc cgtctcgcaa
     5221 aacctgcgcc tgcgttataa caatgttgat gttgctgcca gtgccaatgg cgtgagcggc
     5281 gattatttta atgtctatgg catgaccttc agtgaaggaa acacctttaa tcaggagcag
     5341 ctgaacggtc gtgcgcaggt cgtggttctc gacagtaata ctcgccgcca gcttttcccc
     5401 cataaagcag atgtggttgg cgaggtgatt ctggtcggca atatgcccgc cagagtcatt
     5461 ggtgtggcgg aagaaaaaca gtcgatgttt ggtagcagta aagtgctgcg tgtctggcta
     5521 ccttacagca cgatgtccgg gcgagttatg ggccagtcgt ggctgaactc cattactgtc
     5581 agggtaaaag aaggatttga cagcgccgag gcggaacagc aactcacgcg tttactttca
     5641 ctgcgccacg gaaagaagga tttctttacc tggaacatgg acggcgtctt gaaaactgtt
     5701 gaaaagacca cacgtacttt acaactgttt ctgacgctgg tggcggtgat ttcgctggtg
     5761 gtgggcggta ttggtgtaat gaatattatg ctggtgtcag tgaccgagcg gacgcgggaa
     5821 attggcattc gcatggctgt aggtgcgcga gcaagcgatg ttttgcaaca gttcctgatc
     5881 gaagccgtac tggtttgcct ggtcggtggc gcgttgggaa taacgctgtc actgttaatt
     5941 gctttcacct tgcagctttt cttacccggc tgggagattg gtttttcacc gttggcactg
     6001 ctgctggcgt ttctctgctc gacggccacc gggattttat ttggatggtt acccgcacga
     6061 aatgcggcac gactggatcc agtagatgct ctggcacgag agtaattttt gagataaaaa
     6121 tgccagccga tcgggctggc attttgcctt taggatgtac acaatgagac agaagagcta
     6181 tgcgactgcc gcttctactt cgacgggcac aataacactg gcgtgattgc cttttggccc
     6241 ctggtggaca tcaaactgaa cggattgtcc agcttttagc gttctgtaac catccatctg
     6301 aatggtggaa taatgagcga aaatatcttc gccgccgcct tcagggcaga tgaaaccaaa
     6361 ccctttggca ttgttgaacc acttaacagt acccttttcc atgcttcgac atccttcgca
     6421 aatcttatac aagtaagatg gaataaaccg gggtcagaga gggggctgtt caaaacctcg
     6481 ccaactctgg aaatacaatt tagagaatta gggcgagccg tcaagcgttt gacaggggcc
     6541 agggggcagg tatgaatcaa aaatttgaag cagttaacgc tattgacagg aatgtgacag
     6601 atgtcgctga tgccaacgat agatgatagt tatctatcat gtggagtaga ttggtcaggc
     6661 aaataagctc ttgtcagcgg cagggcgttc tgccgataac cgtaaccgaa gatgataact
     6721 gacaatgggt aaaacgaacg actggctgga ctttgatcaa ctggcggaag aaaaagttcg
     6781 cgacgcgcta aaaccgccat ctatgtataa agtgatatta gtcaatgatg attacactcc
     6841 gatggagttt gttattgacg tgttacaaaa attcttttct tatgatgtag aacgtgcaac
     6901 gcaattgatg ctcgctgttc actaccaggg gaaggccatt tgcggagtct ttaccgccga
     6961 ggttgcagaa accaaagtgg cgatggtgaa caagtacgcg agggagaatg agcatccatt
     7021 gctgtgtacg ctagaaaaag cctgaatgca ggcataaaaa ttgggggagg tgcctatgct
     7081 caatcaagaa ctggaactca gtttaaatat ggctttcgcc agagcgcgcg agcaccgtca
     7141 tgagtttatg accgtcgagc acttgttact ggcgctgctc agtaacccat ctgcccggga
     7201 ggcgctggaa gcgtgttctg tggatttggt tgcgctctgt caggaactgg aagcctttat
     7261 tgaacaaacc acacccgttc tgcctgccag tgaagaggag cgcgacacac agccgacgct
     7321 gagttttcag cgtgtactgc aacgtgcggt cttccatgtc cagtcctccg gtcgcaatga
     7381 ggtaaccggt gcaaacgttc tggtcgctat ctttagcgaa caggagtcgc aggcggcata
     7441 tctgttgcgt aaacatgaag tcagccgtct cgatgtggtg aactttatct ctcatggcac
     7501 gcgtaaagac gagccgacac agtcttctga tcctggcagc cagccaaaca gcgaagaaca
     7561 agctggtggg gaggaacgta tggagaattt cacgacgaac ctgaatcagc ttgcgcgcgt
     7621 gggcggaatc gacccactga ttggtcgtga gaaggagctg gagcgtgcta ttcaggttct
     7681 ctgccgtcgc cgtaaaaaca acccgctgct ggtgggggaa tctggtgtcg gtaaaaccgc
     7741 gattgcggaa ggtcttgcct ggcgaattgt tcagggcgat gtgccggaag tgatggctga
     7801 ctgtacgatt tactctctcg atatcggttc tctgttagcg ggcactaaat atcgcggcga
     7861 ctttgaaaaa cgttttaaag cgttgctcaa gcagctggag caggacacta acagcatcct
     7921 gtttattgat gagatccaca ccattatcgg tgcgggtgca gcgtctggtg gccaggtcga
     7981 tgcggctaac ctgatcaaac cgttgctctc cagcggtaaa attcgcgtaa ttggttcgac
     8041 aacctatcag gagttcagca acattttcga gaaagaccgt gctctggcgc gtcgcttcca
     8101 gaaaattgat attactgaac cgtcgatcga agaaactgtt caaatcatca atggcctgaa
     8161 accgaagtat gaagcgcacc acgacgtgcg ttatactgca aaagcggtgc gtgcagcggt
     8221 agagctggcg gtgaaataca ttaacgatcg tcatctgccg gataaagcca ttgacgttat
     8281 cgacgaagcg ggcgctcgcg cacgcctgat gccggtaagc aaacgcaaga aaaccgttaa
     8341 tgtggcggat attgagtccg tggtggcccg tattgcgcgc attccagaga agagtgtttc
     8401 tcagagtgac cgcgataccc tgaaaaacct cggcgatcgc ctgaaaatgc tggtcttcgg
     8461 tcaggataaa gccattgagg cgctgactga agccattaag atggcgcgtg caggtttagg
     8521 tcacgaacat aaaccggttg gttcgttcct gtttgccggc cctaccgggg tcgggaaaac
     8581 agaggtgacg gtacagcttt cgaaagcgtt gggcattgag ctgctgcgct ttgatatgtc
     8641 cgagtatatg gaacgccata ccgtcagccg tctgattggt gcgcctccgg gatacgttgg
     8701 ttttgatcag ggaggtttgc tgactgatgc ggtcatcaag catccacatg cggtgctgtt
     8761 gctggacgaa atcgagaaag cgcatccgga cgtgttcaat attctgttgc aggtgatgga
     8821 caacggtacg ctgaccgata acaacggacg caaagcggac ttccgtaacg tggtgctggt
     8881 gatgaccacc aacgccgggg tacgtgaaac tgagcgtaaa tccattggtc ttatccacca
     8941 ggataacagc accgatgcga tggaagagat caagaagatc tttacaccgg aattccgtaa
     9001 ccgtctcgac aacattatct ggttcgatca tctgtcaact gacgtgatcc atcaggtggt
     9061 ggataaattc atcgtcgagt tgcaggttca gctggatcag aaaggtgttt ctctggaagt
     9121 gagccaggaa gcgcgtaact ggctggccga gaaaggttac gaccgggcaa tgggcgcacg
     9181 tccgatggcg cgtgtcatcc aggacaacct gaaaaaaccg ctcgccaacg aactgctgtt
     9241 tggttcgctg gtggacggcg gtcaggtcac cgtcgagcgg gataaagaga aaaatgagct
     9301 gacttacgga ttccagagtg cacaaaagca caaggcggaa gcagcgcatt aatctgattg
     9361 ttaggtaggt tggtcaagtc cgtaatctcg aaagaggtta cggacttttt gtttatgggg
     9421 tggaggaggt tcagaccctt tttttaatga tgatggtaag ttgttgataa ttagtgctgc
     9481 gggaaggtaa ggataaaaaa gggtgctgca ggagaatggg atggttttgc tttattaaca
     9541 acgggctaaa cgtgtagtat ttgagttcac tgccgtacag gcagcttaga aattcacagg
     9601 taacatactc cacccgccca ccatgttcac tgccgtacag acagataaaa tgcgaaaaaa
     9661 aagctcgcac tttcgtacga gctcttcttt aaatatggcg gtgagggggg gattcgaacc
     9721 cccgatacgt tgccgtatac acactttcca ggcgtgctcc ttcagccact cggacacctc
     9781 accaaattgt tttgctacca aacctcatgg gtggcaacgg ggcgctacta tagggagttg
     9841 gagtaaaacg gtcaagaaga attttaatga taattattgt ttgctcatac tgtaaacaag
     9901 ttgtgcagta tatctacatc gagacaagtt acggacttat acttccaaag tacttcatac
     9961 atatcacaaa ataaaaaggc cggttaaacc gaccttttac tcgttctttc tcttcgccca
    10021 tcaggcggta aaacaatcag cgactacgga agacaatgcg gcctttgctc aggtcgtacg
    10081 gggtcagttc aacagtcact ttgtcgcccg tcaggatgcg gatgtagttt ttgcgcattt
    10141 taccggagat gtgtgcagta accacgtgac cgttttctaa ctctacgcgg aacatggtat
    10201 taggcaacgt ttcaagaacg gtaccttgca tttcaatatt gtcttctttg gccatctaat
    10261 cctctggggt atcactaccg taatttgaac cggcaagata atgccgaagt tctgtaaata
    10321 agtaaagatt tgcgcgctaa atcgcaacaa acaggttcgg cacattactc cgaaaacaca
    10381 cggttaagcc gcaccaaaag cgcaacgtat aagggagcgg tgagataaac gatgggcgtt
    10441 acctgacgcg aaaaattcct tatcggcagc ggggtaatga gcgtaaccaa ctctgcgacc
    10501 gcaattataa cactctgggg agaaatgtgc cgaaaacatt cattcttgtg gtgaaaacaa
    10561 gcatcgtggt acccagaaat tattcggcaa tcgtccgagg cgcatttgat tgagataatt
    10621 aaggtaatcc cggcggggaa tttcgcaggc accaagcgat gctgtgtgat cgttaaggac
    10681 ctggcagtcg ataagcttac cgccatgacc gataaattcc tcacagaata ccagaagcgc
    10741 cgttttagac gcattttcca tccggctgaa catggactcg ccacaaaata gcgttccctg
    10801 ggccacgccg tacataccgc cgacaagctc atcttcacgc cagacttcaa tggagtgggc
    10861 atggccgagt tcgtgaaggc gatggtaggc ttcgaccacg ccacgcgtga tccaggttcc
    10921 ttcttcgcga tcgctggcac agccttcaat gacctgacca aaagcgtaat tcatcgtgac
    10981 acgatagggc gagcgtttat gaaatcgctt catactacgg ctgatatgca gtgattctgg
    11041 ccatagcacc gcgcggggat cgggcgacca ccagaggatg gggtcgcctg gagaaaacca
    11101 cggaaaaata ccacgctggt aagccattaa caggcgcgca gggctaagat cgcccccaag
    11161 tgccagcagg ccgttaggct cacgtaatgc gccttccggg gaagggaagg ctattgaatg
    11221 gcgagaaagc tgaaccaggc gcatgaccgc aaaactccac gcaagtcgga tcgttcaata
    11281 atagcttaca aaccctgctt gaactggtaa taacgcccct gtctggcaag cagctctgcg
    11341 tgagtacctt gctcaataat ttgcccgttg tccatcacta ttatttgttg gaaacgagag
    11401 agtccgcgaa gtcgatgggt gaccattaac accgttttct cacgcatcat ttctgcaagc
    11461 aattcaagga tctggctttc ggttgtggca tctaagcctt cggtaggttc atccagcaac
    11521 accagtggcg catcatgtaa cagcgcacgg gcgatagcca gacggcgcag ttcaccaccg
    11581 gagagctggc gtccgccttc acctaaccaa ctgttgagac ctgcatcctc gagcagcttc
    11641 tccagaccaa cgcgacgcaa gctctccgcc agagcctcat cactactgcc aggcgaggcg
    11701 agtaacagat tatcacgcag cgtggcgcta aacagatgca ctcgctgagg aacaacgctg
    11761 atggtctgtc gtagagccgc ttcattcagg ctggctatgg ggctatcgtt aagcaaaatc
    11821 tcgccctgtt gcgggtccca agcgcgggtc agcagttgta acagtgttga tttgccgcat
    11881 ccggttcgcc cgagaatcgc aatatgttcc ccggcgttta cctgaagaga aatcccttta
    11941 agtgcctgtt gggattgctc cggataagtg aactgaacat cccgtaatgt cagcgaaacg
    12001 cgatcggcaa cacgagtttg ggtatcaggg aaggtgactt ccggtttttg atccgttaaa
    12061 tcagtgatcc gaacggcaga ggcaatgact tgccccagat gctgaaatgc acccgttact
    12121 ggtgccagtg cttcaaacgc ggctaacgcg cagaagacaa acagggcaat taacgcgccg
    12181 ggttgagcat tgccgccaac gccgccagac gccatccaca gcatcaggat caccgctaac
    12241 gcgccaatga gcagcattat cacttgcgac aatgcggtca gttcagattg acggcgttgc
    12301 gcttccagcc attgaatttc tgtattctct agttgcgtgc gataacgatc gctggcacca
    12361 aaaatggtca gctcagcttg cccttgcagc caggccgtca gttgttggcg atactgtccg
    12421 cgaagatgag tcagattttg cccggtgctt tttcccgcac gataaaacag cggtggcatc
    12481 aggaaaagcg tcagtaacat aatgccgccc agcgtaaagg cgagggtgaa atcaaggaaa
    12541 cttaacccga ttgtcaccat cataatcacc acaaaagcgc ccaccagcgg cgagataacg
    12601 cgcaggtaaa gatgatcgag cgtatcaaca tccgccacca cgcgattgag caattcgccc
    12661 tgacgatagc gcgccagtcc ggcaggggag aggggcaaca atttgctgaa ggtgtaaatg
    12721 cgcagatgct gcaacacgcg gaaagtcgcg tcgtgactta ccagacgttc aaaataacgc
    12781 ccggcagtac gggtgattgc ggcaccacgc acgcccgcag cgggtagcat atagttgaag
    12841 ctgtacagtc cggcaacccc cgcaaccgct gaggccgaga ggaaccagcc ggaaagtgtc
    12901 aacagtccga tactggcgag cagcgtcaca attgccagca caataccaag acttaacatc
    12961 catttatgac gtttatacag tgctagatag ggtagcaaag cgcgcattta aatctcctcc
    13021 tgacgatggg ccagtaatgt ggcgaatggg ccaccagcca cacttaattc cgcgtaacgt
    13081 ccttgctcaa taatccggcc atcctgcata acccaaatga catcccagtc agcaagatct
    13141 tctaactggt gggtgaccat taacgttgtc tggcgcagag aggcggcatt cagcgcctcc
    13201 attacgcgct gttcactgtg agcatcaagg ctggcagcgg gttcatccaa cagtaatagc
    13261 gaacagggat ttagtaacac acgggccacc gccacgcgct gcgcctgccc cacggaaagg
    13321 cgggcagcct ggtcgccaac aggcgtatca acgccttgtg gcaggagcgg tagaaactcg
    13381 ctgacccaag cgttatccag cgctgcttgt aattcatgtt cgctggcatc aggtcgcgcc
    13441 agtagtacgt tatcccgtaa tgttgctgcc ggtaattgtg gattttgccc aacccaggag
    13501 agatgtttac gccatgattc tggtgataaa tcgcgtaatt ctatcccgtt gattcgtagc
    13561 gatccctgat atgagagaaa accagaaagc gcgttcaaca gtgaactttt acctgaaccg
    13621 ctgcgaccaa ccaacacggc acgttggcct gctggcaaag taaagttcag cggtccggcc
    13681 agcgttttac cttccggcga cgtgataaac agatcctcgg cctcaatggt caccggatcg
    13741 gtcgatgcta attccacctc gccacgctgc ggatgggcga gcggggtttc cataaatgtt
    13801 ttcagactgt cagctgcacc aacagcctgg gctttagcat gataaaacgt accgagatcg
    13861 cgtaatggct ggaaaaactc tggcgcaagg atcagggcca gaaaacccgc agccagcgtc
    13921 acgccagtat cgtagtgacc aaaatccagc tcgccgagat aggaaaaacc aaagtagacc
    13981 gccaccagag caattgacag cgaggtaaaa aattcgagaa tgccggagga taaaaatgcc
    14041 agccgtagca cttccattgt ccgttggcgg aaatcttccg aagcagaacg aatactttca
    14101 atttcagctt caccacgacc aaaaatacgc aatgtttcca tgccgcgcag gcgatcgagg
    14161 aaatgcccac ttaagcgagc aagagcgaga aagttacgtc ggttagcatc ggcagccccc
    14221 attccaacca gcgccataaa caacggaatt aacggtgcag tgcccagcag aatgagcgcc
    14281 gcagcccagt ttgaggggaa gattgccacc acaatcagca acggcaccga cactgccagc
    14341 gccatttgcg gcaggtagcg tgcatagtaa tcatgcatat cgtcaatttg ctcgagtacc
    14401 agcgtcgccc agctccccgc aggtttaccc tgaatccacg ctggccctgc ttgttgcaga
    14461 cggtcgagaa cctgccggcg gatggcaaag cggatatgct gcccggcgtg ataacccacc
    14521 cgttcgcgta accagaccac ccatgcgcgc agtacaaagg tcagaaccag taacgtaaag
    14581 ggaagcagca gggcttcacg gggaatattc tccataatca tatgttgcag aattcgcgcc
    14641 atgaaccagg cctgggcaat gatcaatatg ccactcacaa agcccagcag acgagaaata
    14701 ttcagccaac gttgggagat gacgctttgc tgttttaacc agcgggttaa ctctttttga
    14761 cgagatttat tcattgcacg cttagcaggt gagttatcag aattatttgc agagcaatgt
    14821 tacaacgggg aaaaaataaa ggcgacccat agtcgcaagg tgtcgccttc tttacttttg
    14881 ttactgattt gtaaaattat tttgcgtcag ctaaaccatc gaggtagcgt tccgcatcaa
    14941 gtgctgccat gcagcctgta ccggccgaag taatggcctg acgataaata tgatccatca
    15001 cgtcacccgc ggcaaagacg ccaggaatgc tggtctgggt ggcattacca tgaatacccg
    15061 actgtacttt gatgtagccg ttttccagtt ccagctgccc ttcgaaaatg gcagtattcg
    15121 ggctgtgacc gatagcaaca aacagaccgg caacgtcgag tgattcgatg ttatcgctgt
    15181 tttgcgtatc gcgcagacga acgccagtga cacccatttg atcgccggtc acttcttcca
    15241 gcatccggtt ggtgtgcaga atgatgttgc cgttctccac tttatccatc agacgcttaa
    15301 tgaggatttt ttccgcgcgg aaaccgtcac ggcggtgaat cagatgtact tccgaagcga
    15361 tgttagacag atacaacgcc tcttcaaccg cggtattgcc gccgccgatg accgcaactt
    15421 tctggttgcg atagaagaaa ccgtcgcagg ttgcacaagc agaaacccca cggcctttaa
    15481 aggcttcttc agagggcagg ccgagatagc gtgcagaagc tccggtggca ataatcagcg
    15541 cgtcgcaagt gtattcgccg ttatcgccat tcagacggaa cggacggttt tgcagatcca
    15601 ccttgttgat atgatcaaaa atgatttcag tttcaaattt ggtggcatgt tcgtgcatgc
    15661 gctccattaa taacggaccg gtcagatcgt ttggatcgcc aggccagttt tccacttctg
    15721 tggtggtggt cagttggccg cctttttcca tgccggtaat cagcacaggt tgcaggttgg
    15781 cgcgcgccgc atagacagca gcggtgtatc ccgccgggcc tgaacccagg ataagcagtt
    15841 tactgtgttt ggtcgtgccc atgagatccc catagttgtt ggcagacaat gggcaggatt
    15901 gtagggaatt tactgacgta aaaaaagagt atgacgattt tgttaacaat ttgtgcaatc
    15961 ggcagcatcg ataagcaggt caaattctcc cgtcattatc acctctgcta cttaaatttc
    16021 ccgctttata agctgattaa atgatgaata aacgcccctg ttaatgaata tctggcatgt
    16081 tgtactaaaa atcgatgttt tgctttgaca atcccctggt gttttgcgaa aacattcgag
    16141 gaagaaaaaa aacagtattc ttatatgcgc ataaccatgc atgtaaatac catgtttacc
    16201 gtgctagtga aatctacgta tggcgtggac agacgccatt cgtgatgtcg atagctgcca
    16261 caaggcaacg gtcttctcac cgtagaccca ggcattgcgc gccgtgaatc ttcatgattt
    16321 cggtctatcg tgacgggtag cgactctgaa cagtgatgtt tcagggtcag acaggagtag
    16381 ggaaggaata cagagagaca ataataatgg tagatagcaa gaagcgccct ggcaaagatc
    16441 tcgaccgtat cgatcgtaac attcttaatg agttgcaaaa ggatgggcgt atttctaacg
    16501 tcgagctttc taaacgtgtg ggactttccc caacgccgtg ccttgagcgt gtgcgtcggc
    16561 tggaaagaca agggtttatt cagggctata cggcgctgct taacccccat tatctggatg
    16621 catcacttct ggtattcgtt gagattactc tgaatcgtgg cgcaccggat gtgtttgaac
    16681 aattcaatac cgctgtacaa aaacttgaag aaattcagga gtgtcattta gtatctggtg
    16741 atttcgacta cctgttgaaa acacgcgtgc cggatatgtc agcttaccgt aagttgctgg
    16801 gggaaaccct gctgcgtctg cctggcgtca atgacacacg gacatacgtt gttatggaag
    16861 aagtcaagca gagtaatcgt ctggttatta agacgcgcta acacggaaca ggtgcaaaat
    16921 cggcgtattt tgattacact cctgttaatc catacagcaa cagtactggg gtaacctggt
    16981 actgttgtcc gttttagcat cgggcaggaa aagcctgtaa cctggagagc ctttcttgag
    17041 ccaggaatac actgaagaca aagaagtcac attgacaaag ttaagtagcg gccgtcgcct
    17101 tctggaagcg ttgctgatcc ttattgtcct gtttgccgtc tggttgatgg ctgccttact
    17161 aagctttaac ccttcggacc ccagctggtc gcaaacggcc tggcatgaac ctatccataa
    17221 tttaggtggg atgcccggtg cgtggctggc agatacgctg ttctttattt ttggcgtgat
    17281 ggcttacacc attcccgtca ttattgtcgg cggttgttgg tttgcctggt gtcatcagtc
    17341 cagtgacgaa tacattgatt attttgccgt ttcgttacgc atcattggcg ttttggcgct
    17401 catccttacc tcctgtggtc tggcggcaat caacgctgac gatatctggt attttgcctc
    17461 cggtggcgtc attggcagct tactaagcac tacgttacaa ccactgctac acagtagcgg
    17521 gggaactatt gcgctgctct gcgtttgggc tgcgggcctg acgctgttca ccggttggtc
    17581 atgggtgacc attgctgaaa aactcggcgg ctggatttta aacattctca ccttcgccag
    17641 taatcgtacc cgtcgcgatg atacctgggt cgatgaagat gaatatgaag atgacgaaga
    17701 gtatgaagat gaaaaccacg gcaaacagca tgaatcacgc cgtgcccgta ttcttcgcgg
    17761 cgcgctagcg cgtcgtaaac ggttggcgga aaaattcatt aatccgatgg ggcggcaaac
    17821 agacgctgcg ttgttctccg gtaagcggat ggatgatgaa gaagagatta tctacactgc
    17881 acgcggtgtg gctgccgacc cggacgacgt cctattttcg ggcaatcgtg caacgcagcc
    17941 agaatatgac gaatacgatc cattattaaa cggtgcgcca attaccgaac ctgttgctgt
    18001 agcagctgct gctaccacgg cgacacaaag ctgggctgcg ccggttgaac ctgtgaccca
    18061 gacgccgcct gttacttctg ttgatgttcc accttcgcaa cctacagtag cctggcagcc
    18121 tgtaccgggt ccacaaacgg gagagccggt tattgctcct gcaccggaag gttacccaca
    18181 gcagccacaa tatgcgcagc ctgcagtgca atataatgag ccgctgcaac aaccttacta
    18241 cgctcctgcg gcggaacaac ctgttcagca accgtattac gcaactgcgc cggaacagcc
    18301 tgcgcaacag ccgtattatg cccctgcgcc agaacaaccg gtggcaggta acgcctggca
    18361 agccgaagag cagcaatcca cttttgctcc acagtctaca taccagactg agcaaactta
    18421 tcagcagcca gccgctcagg agccgttgta ccaacagccg caacccgttg aacagcagcc
    18481 tgttgtggag cctgaacccg ttgtagaaga gacaaaaccc gcgcgtccgc cgctttacta
    18541 ttttgaagaa gtggaagaga agcgagcccg tgaacgtgaa caacttgcgg cctggtatca
    18601 accgattcca gaaccggtta aagaaccaga accgatcaaa tcttcgttga aagcgccttc
    18661 tgttgcagca gtacctccag tagaagccgc tgccgctgtt tctccgctgg catctggcgt
    18721 gaaaaaagcg acactggcga cgggggctgc cgcaaccgtt gccgcgccag tcttcagtct
    18781 ggcaaatagc ggtggaccgc gtccgcaagt caaagaggga attggcccgc agttgccacg
    18841 accgaaacgt atccgcgtgc caactcgtcg tgaactggcg tcttacggta ttaagctgcc
    18901 ctcacagcgt gcggcggaag agaaagcccg tgaagcccgg cgcaatcagt atgattctgg
    18961 cgatcagtat aacgatgatg aaatcgatgc gatgcagcag gatgaactgg cacgtcagtt
    19021 cgcccagaca cagcagcaac gctatggcga acagtatcaa catgatgtgc ccgtaaacgc
    19081 agaagatgca gatgctgcgg cagaggctga actggctcgt cagtttgcgc aaactcaaca
    19141 acaacgttat tccggcgaac aaccggctgg ggcgaatccg ttctcgctgg atgattttga
    19201 attttcgcca atgaaagcgt tgctggatga tggtccacac gaaccgttgt ttacgccaat
    19261 tgttgaacct gtacagcagc cgcaacaact ggttgcaccg cagcagcagt atcagcagcc
    19321 acaactgccg gttgcgccac agcagcaata tcagcagccg caacagccgg ttgcgccgca
    19381 gcagcagtat cagcagccac aacagcaggt tgcgccgcag ccacaatatc agcagccgca
    19441 acaaccggtt gcaccgcagc agcaggatac cctgcttcat ccgctgttga tgcgtaatgg
    19501 cgacagccgt ccgttgcata aaccgacgac gccgctgcct tctctggatt tgctgacacc
    19561 gccgccgagc gaagtggagc cggtagatac ctttgcgctt gaacaaatgg ctcgcctggt
    19621 ggaagcgcgt ctggctgatt tccgtattaa agccgatgtc gtcaattact ctccggggcc
    19681 ggttatcact cgctttgaac ttaacctggc tcctggcgta aaagcggcgc gcatttctaa
    19741 cttgtcacgg gaccttgccc gttcactttc gacggtggcg gtgcgtgtcg ttgaagttat
    19801 tcctggcaaa ccctatgtag gtctggagtt accaaataaa aaacgacaaa ccgtttatct
    19861 gcgcgaagtt ttggataacg ctaaattccg cgataatccg tcgccattaa ccgtggtgct
    19921 gggtaaagat atcgccggtg agccggtggt tgccgatctg gcgaaaatgc cgcacttgtt
    19981 ggttgcgggg actaccggtt ccggtaaatc tgtcggtgtg aacgcgatga tcctgagcat
    20041 gctttataaa gcacagccag aagatgtgcg tttcatcatg atcgacccga aaatgctgga
    20101 gctttcggtt tatgaaggca ttccgcatct gttaacggaa gtcgttactg atatgaaaga
    20161 tgccgccaac gcgctgcgct ggtgtgttaa cgagatggag cgtcgttata aactgatgtc
    20221 tgcgctgggt gtgcgtaatc tggcgggtta taacgaaaaa attgctgaag ccgatcgcat
    20281 gatgcgtccg attccagacc cgtactggaa gccgggtgac agtatggatg cccagcatcc
    20341 ggtgctgaaa aaagaaccat acattgtggt gttggttgac gaatttgccg acctgatgat
    20401 gacggtaggt aaaaaagtgg aagagctgat agcacgtctg gcgcaaaaag cccgtgccgc
    20461 gggtatccac ctcgtactgg caactcagcg tccatcggtt gatgttatta ctggtctgat
    20521 taaagcgaat attccgaccc gtatcgcctt taccgtatcc agtaagattg actcacgtac
    20581 cattcttgat caggctggcg cggaatcact gctggggatg ggggatatgc tctactctgg
    20641 gccgaactcc acgttgccgg tacgtgtcca tggtgctttt gttcgcgatc aggaagttca
    20701 tgccgtggtg caggactgga aagcgcgtgg tcgcccacag tatgttgatg gcatcacttc
    20761 cgacagtgaa agcgaaggtg gcgcgggcgg tttcgatggc gctgaagaac tggatccgtt
    20821 gttcgatcag gcggtgcagt ttgtcactga aaaacgcaaa gcgtcaattt ctggcgtaca
    20881 gcgtcagttc cgcattggtt ataaccgtgc agcgcgtatt atcgaacaga tggaagcgca
    20941 ggggattgtc agcgaacagg ggcacaacgg taatcgtgaa gtgctggccc caccgccgtt
    21001 tgactaatta atgcattgcc ggataaggcg cggtagcgtc gcatccggca ctctatcaac
    21061 tgaaaattca gtattttctt ttttcctcaa gctgattatt agcctggaat agagagtaga
    21121 gggaactccc gatcgggagt gacgtaattt gaggaataat gatgaaaaaa attgccatca
    21181 cctgtgcatt actctcaagc ttagtagcaa gcagcgtttg ggctgatgcc gcaagcgatc
    21241 tgaaaagccg cctggataaa gtcagcagct tccacgccag cttcacacaa aaagtgactg
    21301 acggtagcgg cgcggcggtg caggaaggtc agggcgatct gtgggtgaaa cgtccaaact
    21361 tattcaactg gcatatgaca caacctgatg aaagcattct ggtttctgac ggtaaaacac
    21421 tgtggttcta taacccgttc gttgagcaag ctacggcaac ttggctgaaa gatgccaccg
    21481 gtaatacgcc gtttatgctg attgcccgca accagtccag cgactggcag cagtacaata
    21541 tcaaacagaa tggcgatgac tttgtcctga cgccgaaagc cagcaatggc aatctgaagc
    21601 agttcaccat taacgtggga cgtgatggca caatccatca gtttagcgcg gtggagcagg
    21661 acgatcagcg cagcagttat caactgaaat cccagcaaaa tggggctgtg gatgcagcga
    21721 aatttacctt caccccgccg caaggcgtca cggtagatga tcaacgtaag tagaggcacc
    21781 tgagtgagca atctgtcgct cgatttttcg gataatactt ttcaacctct ggccgcgcgt
    21841 atgcggccag aaaatttagc acagtatatc ggccagcaac atttgctggc tgcggggaag
    21901 ccgttgccgc gcgctatcga agccgggcat ctgcattcta tgatcctctg ggggccaccg
    21961 ggtaccggca aaacaactct cgctgaagtg attgcccgct atgcgaacgc tgatgtggaa
    22021 cgtatttctg ccgtcacctc tggcgtgaaa gagattcgcg aggcgatcga gcgcgcccgg
    22081 caaaaccgca atgcaggtcg ccgcactatt ctttttgttg acgaagttca ccgtttcaac
    22141 aaaagccagc aggatgcatt tctgccacat attgaagacg gcaccatcac ttttattggc
    22201 gcaaccactg aaaacccgtc gtttgagctt aattcggcac tgctttcccg tgcccgtgtc
    22261 tatctgttga aatccctgag tacagaggat attgagcaag tactaactca ggcgatggaa
    22321 gacaaaaccc gtggctatgg tggtcaggat attgttctgc cagatgaaac acgacgcgcc
    22381 attgctgaac tggtgaatgg cgacgcgcgc cgggcgttaa atacgctgga aatgatggcg
    22441 gatatggccg aagtcgatga tagcggtaag cgggtcctga agcctgaatt actgaccgaa
    22501 atcgcaggtg aacgtagtgc ccgctttgat aacaaaggtg atcgctttta cgatctcatt
    22561 tccgcactgc ataaatcggt acgtggtagc gcacccgatg cggcgctgta ctggtatgcg
    22621 cgaattatta ctgccggtgg cgatccgtta tatgttgcgc gtcgctgtct ggcgattgcg
    22681 tctgaagatg tgggtaatgc tgatccacga gcgatgcagg tggcaattgc agcctgggat
    22741 tgctttactc gcgttggccc ggcggaaggt gaacgcgcca ttgctcaggc gattgtttac
    22801 ctggcctgcg cgccaaaaag caacgctgtc tacactgcgt ttaaagctgc gctggcggat
    22861 gttcgcgaac gtccggatta tgacgtgccg gttcatttgc gtaatgcgcc gacgaaatta
    22921 atgaaggaaa tgggctacgg gcaggaatat cgttacgctc atgatgaagc aaacgcttat
    22981 gctgccggtg aggtttactt cccgcgggaa atagcacaaa cacgctatta tttcccgaca
    23041 aacaggggcc ttgaaggcaa gattggcgaa aagctcgcct ggctggctga acaggatcaa
    23101 aatagcccca taaaacgcta ccgttaatgt tatcgttgcg gtaatgttgt tactgtatcc
    23161 ctgtggtcgc aggctgtggc cacatctccc atttaattcg ataagcacag gataagcatg
    23221 ctcgatccca atctgctgcg taatgagcca gacgcagtcg ctgaaaaact ggcacgccgg
    23281 ggctttaagc tggatgtaga taagctgggc gctctcgaag agcgtcgtaa agtattgcag
    23341 gtcaaaacgg aaaacctgca agcggagcgt aactcccgat cgaaatccat tggccaggcg
    23401 aaagcgcgcg gggaagatat cgagtcttta cgtctggaag tgaacaaact gggcgaagag
    23461 ctggatgcag caaaagccga gctggatgct ttacaggctg aaattcgcga tatcgcgctg
    23521 accatcccta acctgcctgc agatgaagtg ccggtaggta aagacgaaaa tgacaacgtt
    23581 gaagtcagcc gctggggtac cccgcgtgag tttgactttg aagttcgtga ccacgtgacg
    23641 ctgggtgaaa tgcactctgg cctcgacttt gcagctgcag ttaagctgac tggttcccgc
    23701 tttgtggtaa tgaaagggca gattgctcgc atgcaccgcg cactgtcgca gtttatgctg
    23761 gatctgcata ccgaacagca tggctacagt gagaactatg ttccgtacct ggttaaccag
    23821 gacacgctgt acggtacggg tcagctgccg aaatttgctg gcgatctgtt ccatactcgt
    23881 ccgctggaag aagaagcaga caccagtaac tatgcgctga tcccaacggc agaagttccg
    23941 ctgactaacc tggtgcgcgg tgaaatcatc gatgaagatg atctgccaat taagatgacc
    24001 gcccacaccc catgcttccg ttctgaagcc ggttcatatg gtcgtgacac ccgtggtctg
    24061 atccgtatgc accagttcga caaagttgaa atggtgcaga tcgtgcgccc ggaagactca
    24121 atggcggcgc tggaagagat gactggtcat gcagaaaaag tcctgcagct gctgggcctg
    24181 ccgtaccgta aaatcatcct ttgtaccggc gacatgggct ttggcgcttg caaaacctat
    24241 gacctggaag tatggatccc ggcacagaac acctaccgtg agatctcttc ctgctccaac
    24301 gtttgggatt tccaggcacg tcgtatgcag gcacgttgcc gcagcaagtc ggacaagaaa
    24361 acccgtctgg ttcataccct gaacggttct ggtctggctg ttggtcgtac gctggttgca
    24421 gtaatggaaa actatcagca ggctgatggt cgtattgaag taccagaagt tctgcgtccg
    24481 tatatgaacg gactggaata tattggctaa tacccaattt ttctgaatct aaaaagcgcc
    24541 tgcgggcgct ttttttgtct ccctttgata ccgaacaata attactcctc acttacacgt
    24601 aatactactt tcgagtgaaa atctacctat ctctttgatt ttcaaattat tctatgtata
    24661 caagcctata tagcgagctg ctatagaaat aattacacaa tacggtttgt tactggaatc
    24721 aatcgtgagc aagcttgagt gagccattat gaaaacgaaa atccctgatg cggtattggc
    24781 tgctgaggtg agtcgccgtg gtttggtaaa aacgacagcg atcggcggcc tggcaatggc
    24841 cagcagcgca ttaacattac cttttagtcg gattgcgcat gctgtcgata gcgccattcc
    24901 aacaaaatca gacgaaaagg ttatctggag cgcctgtaca gttaactgtg gtagtcgctg
    24961 cccgctacgt atgcacgtcg tggacggtga aatcaaatat gtcgaaacgg acaataccgg
    25021 cgatgacaat tacgacggcc tgcactaggt tcgcgcctgc ctgcgtgggc gttccatgcg
    25081 tcgccgtgtc tacaatccgg accgcctgaa atatccgatg aaacgagtcg gggcgcgcgg
    25141 tgaaggcaaa ttcgagcgca ttagctggga agaagcctac gacatcatcg cgaccaatat
    25201 gcagcgcctg atcaaagagt acggcaacga gtctatctat ctgaactatg gcaccggtac
    25261 gctgggcggc accatgaccc gctcctggcc gccgggaaat accctggtcg cgcggctgat
    25321 gaactgctgc ggcggctatc tgaaccatta cggcgactac tcctccgcgc aaattgcgga
    25381 aggtttgaac tatacctacg gcggctgggc agatggcaac agcccgtcgg atatcgaaaa
    25441 cagtaagctg gtagtgctgt ttggtaataa ccctggcgaa acgcgaatga gtggcagtgg
    25501 ggtgacttac tatcttgaac aggcacgcca gaaatctaat gcccgcatga tcatcatcga
    25561 tccgcgctat accgacaccg gtgccgggcg cgaagatgag tggatcccta ttcgtccggg
    25621 aacagatgcc gcactggtta acggtctggc gtacgtcatg atcactgaaa acctggtgga
    25681 tcaggcattc ctcgataaat attgcgttgg ctacgatgag aaaaccctgc cagccagtgc
    25741 gccgaaaaat ggccactata aagcttatat tctgggtgaa gggccagatg gcgtggctaa
    25801 aacaccggaa tgggcctcac aaatcaccgg tgttccggca gacaaaatca tcaaactggc
    25861 tcgtgaaatc ggcagtacca aaccggcgtt tatcagccag ggatggggcc cgcagcgtca
    25921 cgctaacggt gaaatcgcaa cccgtgctat ctcgatgctg gcgattctga ccggtaacgt
    25981 tggtattaac ggaggcaaca gcggcgcgcg tgaaggttca tacagcttac cgtttgtccg
    26041 tatgccgacc ttggaaaacc cgatccagac cagcatttcg atgtttatgt ggaccgatgc
    26101 cattgaacgt ggcccggaaa tgacggcgct gcgtgatggt gtacgcggga aagataagct
    26161 ggatgtgccg atcaaaatga tctggaacta tgccggtaac tgcctgatta accagcattc
    26221 tgaaatcaac cgtacccatg aaatccttca ggatgataag aagtgcgagc tgattgtggt
    26281 tatcgactgc cacatgacct catcggcgaa atatgctgac atcctgctgc ctgactgcac
    26341 cgcttccgaa cagatggact ttgcgctgga tgcatcctgc gggaatatgt cttacgtgat
    26401 tttcaacgat caggtgatta aaccgcgctt tgaatgtaag accatctatg aaatgaccag
    26461 cgaactggca aaacgtcttg gcgttgagca acagtttact gaaggccgta cacaggaaga
    26521 gtggatgcgg catctgtatg cccagtcgcg ggaagcgatt cctgaactgc caacgtttga
    26581 agagttccgc aagcagggga tctttaaaaa gcgcgaccca caagggcacc acgttgctta
    26641 taaagctttc cgtgaagatc ctcaggcaaa tccactgacc acgccatcgg gcaaaattga
    26701 gatttattcg caggcgctgg ctgacattgc cgctacctgg gaattgccag aaggcgatgt
    26761 gatcgatcca ctgccgatct acacgccggg ctttgaaagt tatcaggatc cgttgaacaa
    26821 acagtatccg ctgcagctta cgggtttcca ctataaatct cgcgttcact caacttacgg
    26881 cgacgttgat gtgctgaaag cagcttgccg tcaggaaatg tggatcaacc cgcttgatgc
    26941 gcaaaaacgc ggtatcaaca acggcgataa agtcaggatc tttaacgatc gtggtgaggt
    27001 tcatattgag gcgaaagtga cgccacgaat gatgccgggt gtggtcgcac tgggtgaagg
    27061 tgcctggtat gacccggata caaaacgtgt cgataagggc ggttgtatca acgtactgac
    27121 cactcaacgt ccgtctcctc tcgctaaggg gaatccgtca catacaaacc ttgttcaggt
    27181 tgaaaaggtg taaggagtaa ccgatgacaa cccagtatgg attttttatt gattccagcc
    27241 gttgcaccgg ttgcaaaacc tgcgagctgg cctgtaaaga ctacaaagat ttgacgccag
    27301 aagtcagctt ccgccgcatt tatgaatatg ctggcggcga ctggcaggaa gataacggtg
    27361 tctggcacca gaacgtgttt gcctactatc tgtcgatttc atgtaaccac tgcgaagatc
    27421 cggcttgtac taaagtctgc ccgagcggtg cgatgcataa acgtgaagat ggttttgttg
    27481 tggtcgatga agatgtgtgc attggctgcc gctactgcca tatggcttgc ccgtatggcg
    27541 caccgcaata taacgaaacg aaaggccata tgaccaaatg cgatggttgt tatgaccgtg
    27601 ttgcggaggg taaaaagccg atctgtgttg aatcttgtcc gctgcgggcg ctggatttcg
    27661 gccctatcga cgagctgcgt aaaaaacatg gcgatctggc ggccgttgcg ccgttgccgc
    27721 gagctcactt taccaaaccg aatattgtga tcaaacccaa tgccaatagc cgcccgaccg
    27781 gggataccac tggctatctg gcaaacccga aggaggtgtg agatgggaag tggatggcat
    27841 gaatggccgc tgatgatctt cacggtcttc gggcaatgtg tagcaggtgg ttttatcgtt
    27901 ctggctttgg cgctgctcaa aggcgacctg cgagcagaag cccagcagcg tgttatcgcc
    27961 tgcatgtttg gtttatgggt gctgatgggc attggcttta tcgcctctat gctccatctt
    28021 ggttcaccaa tgcgcgcttt taactcgctc aaccgggtag gggcttcagc actcagtaac
    28081 gaaatcgcca gcggttcgat cttttttgcc gtaggcggca tcggctggtt gctggcaatg
    28141 ctgaaaaagc tgtcaccggc attgcgtacg ctgtggctga tagtgacgat ggttcttggc
    28201 gtcatctttg tctggatgat ggtgcgtgtg tataacagca ttgataccgt tccgacctgg
    28261 tacagcatct ggacgccgat gggcttcttc ctgacgatgt ttatgggcgg cccgttactg
    28321 ggttacctgt tgttgagtct ggctggcgtc gatggctggg cgatgcgtct gctgccagca
    28381 atttctgtac tggcactggt agtgagtggc gtggtgtcag tgatgcaggg cgcagagctg
    28441 gcgactattc atagttctgt gcagcaggcc gcagcgctgg tgccggacta tggtgcgctg
    28501 atgtcctggc ggatcgtgct tttggccgtt gccctgtgct tgtggattgc accacagcta
    28561 aaaggttatc agcctgcggt tccgctactt tctgtatcat tcattctgct tctggcaggg
    28621 gaattaatcg gtcgcggcgt attctatggt ttgcatatga ccgtggggat ggccgtcgca
    28681 agctaatcat aacaaccggg gtttcggccc cggttttctt ttatttctgc ttcgttaacg
    28741 tgtcataact ggtcatcaaa ttacgataat caggaatgtg gttagagaac aacgtcgcca
    28801 gtccttcaat atcattatgc cagtcgcgat gcagctcgca cgccacgccg aatcatgtca
    28861 tcaattgcgc accagcttgc gacatgcgat cccatgccga atgccgggta atttcattaa
    28921 aggtccctga cgcgtcagtc acgacaaaga cgtcaaaccc ttcttcaatg gctgaaagcg
    28981 ccgggaatgc cacgcaaact tcggttacca caccggcaat aattaactgt tttttacctg
    29041 tcgctttgac agcttttaca aaatcttcgt tatcccaggc gttaatattt cccgggcgag
    29101 caatgtaagg tgcatcgggg aattgtgctt tcagttctgg aactaatggg ccgttaggac
    29161 cggtttcaaa actggtggta agaatagttg gtaagttgaa atacttagcc tggtcaccca
    29221 gcgccagcac gttattttta aacttatcgg gttcgatatc ccgtacaagg gaaagtaaac
    29281 cagcctggtg atcaacaagc aaaacg
//
LOCUS       DADMHM010000032        29218 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.033, whole genome shotgun sequence.
ACCESSION   DADMHM010000032 DADMHM010000000
VERSION     DADMHM010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 29218)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29218)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29218
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.033"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(444..1115)
                     /gene="queE"
                     /locus_tag="JN125_001217"
     CDS             complement(444..1115)
                     /gene="queE"
                     /locus_tag="JN125_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HAY8871060.1"
                     /translation="MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTW
                     EKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLL
                     PLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYDVLSQALERANEIKH
                     PVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHK
                     YLNIA"
     gene            1254..1394
                     /locus_tag="JN125_001218"
     CDS             1254..1394
                     /locus_tag="JN125_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871061.1"
                     /translation="MSEENKENGFNHVKTFTKIIFIFSVLVFNDNESKITDAAVNLFI
                     QI"
     gene            1408..2280
                     /locus_tag="JN125_001219"
                     /pseudo
     CDS             1408..2280
                     /locus_tag="JN125_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417258.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YgcG family protein"
     gene            complement(2340..3638)
                     /gene="eno"
                     /locus_tag="JN125_001220"
     CDS             complement(2340..3638)
                     /gene="eno"
                     /locus_tag="JN125_001220"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HAY8871062.1"
                     /translation="MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTG
                     SREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTEN
                     KSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHA
                     DNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGS
                     NAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHF
                     LEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKG
                     IANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQI
                     KTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA"
     gene            complement(3726..5363)
                     /gene="pyrG"
                     /locus_tag="JN125_001221"
     CDS             complement(3726..5363)
                     /gene="pyrG"
                     /locus_tag="JN125_001221"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase (glutamine hydrolyzing)"
                     /protein_id="HAY8871063.1"
                     /translation="MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPY
                     INVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRK
                     ERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQM
                     AVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPA
                     NERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEW
                     EQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVE
                     TRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARH
                     VANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVD
                     DSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPW
                     FVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK"
     gene            complement(5591..6382)
                     /gene="mazG"
                     /locus_tag="JN125_001222"
     CDS             complement(5591..6382)
                     /gene="mazG"
                     /locus_tag="JN125_001222"
                     /EC_number="3.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase"
                     /protein_id="HAY8871064.1"
                     /translation="MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVL
                     DAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFAD
                     SSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWT
                     TLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQK
                     ANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL"
     gene            complement(6453..6788)
                     /gene="mazF"
                     /locus_tag="JN125_001223"
     CDS             complement(6453..6788)
                     /gene="mazF"
                     /locus_tag="JN125_001223"
                     /EC_number="3.1.27.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endoribonuclease MazF"
                     /protein_id="HAY8871065.1"
                     /translation="MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTG
                     MCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKRIAWRARGATKKGTVAPEELQLI
                     KAKINVLIG"
     gene            complement(6788..7036)
                     /gene="mazE"
                     /locus_tag="JN125_001224"
     CDS             complement(6788..7036)
                     /gene="mazE"
                     /locus_tag="JN125_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system antitoxin MazE"
                     /protein_id="HAY8871066.1"
                     /translation="MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLII
                     EPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW"
     gene            complement(7114..9348)
                     /gene="relA"
                     /locus_tag="JN125_001225"
     CDS             complement(7114..9348)
                     /gene="relA"
                     /locus_tag="JN125_001225"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP diphosphokinase"
                     /protein_id="HAY8871067.1"
                     /translation="MVAVRSAHINKAGGFDPEKWIASLGITSQKSCECLAETWAYCLQ
                     QTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKS
                     VVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHL
                     REVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLL
                     HERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDV
                     RAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTV
                     EIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGE
                     MLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVP
                     FTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAG
                     RQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNK
                     PSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGF
                     ITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRD
                     ITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARR
                     LHGS"
     gene            complement(9396..10697)
                     /gene="rlmD"
                     /locus_tag="JN125_001226"
     CDS             complement(9396..10697)
                     /gene="rlmD"
                     /locus_tag="JN125_001226"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HAY8871068.1"
                     /translation="MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGL
                     LPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQR
                     SKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGLRKAGSSDIVDVK
                     QCPILVPQLEALLPKVRACLGSLQAMRHLGHVELVQATSSTLMILRHTAPLSSADREK
                     LERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVA
                     SALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ
                     NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPA
                     TLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK"
     gene            10754..13510
                     /gene="barA"
                     /locus_tag="JN125_001227"
     CDS             10754..13510
                     /gene="barA"
                     /locus_tag="JN125_001227"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component sensor histidine kinase BarA"
                     /protein_id="HAY8871069.1"
                     /translation="MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDA
                     GASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFH
                     LDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYI
                     ALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRR
                     GQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQN
                     VELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTI
                     ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTL
                     NIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIR
                     DTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNR
                     GSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYS
                     PTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKL
                     KQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKL
                     IGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQ
                     QTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPE
                     VNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGL
                     VDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREAS
                     KILG"
     gene            complement(13742..15082)
                     /gene="gudD"
                     /locus_tag="JN125_001228"
     CDS             complement(13742..15082)
                     /gene="gudD"
                     /locus_tag="JN125_001228"
                     /EC_number="4.2.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucarate dehydratase"
                     /protein_id="HAY8871070.1"
                     /translation="MSSQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIMIIK
                     DNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDAGGRGLQ
                     TFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGDRKAT
                     PLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAE
                     SIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMA
                     EFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGL
                     TWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQV
                     PEKPGLGVEIDMDQVMKAHELYQKHGLCARDDAMGMQYLIPGWTFDNKRPCMVR"
     gene            complement(15103..16443)
                     /locus_tag="JN125_001229"
                     /pseudo
     CDS             complement(15103..16443)
                     /locus_tag="JN125_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708582.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glucarate dehydratase"
     gene            complement(16445..17815)
                     /locus_tag="JN125_001230"
     CDS             complement(16445..17815)
                     /locus_tag="JN125_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8871071.1"
                     /translation="MFRSATTSSLSQAASSVEKRTNARYWIVVMLFIVTSFNYGDRAT
                     LSIAGSEMAKDIGLDPVGMGYVFSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFIWS
                     MFTLLQGFVDIFSGFGIIVALFTLRFLVGLAEAPSFPGNSRIVAAWFPAQERGTAVSI
                     FNSAQYFATVIFAPIMGWLTHEVGWSHVFFFMGGLGIVISFIWLKVIHEPNQHPGVNQ
                     KELEYIAAGGALINMDQQNTKVKVPFSVKWGQIKQLLGSRMMIGVYIGQYCINALTYF
                     FITWFPVYLVQARGMSILKAGFVASVPAVCGFIGGVLGGIISDWLMRRTGSLNIARKT
                     PIVMGMLLSMVMVFCNYVNVEWMIIGFMALAFFGKGIGALGWAVMADTAPKEISGLSG
                     GLFNMFGNISGIVTPIAIGYIVGTTSSFNGALIYVGVHALIAVLSYLVLVGDIKRIEL
                     KPVAGQ"
     gene            complement(18232..18681)
                     /locus_tag="JN125_001231"
     CDS             complement(18232..18681)
                     /locus_tag="JN125_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin"
                     /protein_id="HAY8871072.1"
                     /translation="MAEIGIFVGTMYGNSLLVAEEAEAILTAQGHKATVFEDPELSDW
                     LPYQDKYVLVVTSTTGQGDLPDSIVPLFQGIKDSLGFQPNLRYGVIALGDSSYVNFCN
                     GGKQFDALLQEQSAQRVGEMLLIDASENPEPETESNPWVEQWGTLLS"
     gene            complement(18699..19481)
                     /gene="truC"
                     /locus_tag="JN125_001232"
     CDS             complement(18699..19481)
                     /gene="truC"
                     /locus_tag="JN125_001232"
                     /EC_number="5.4.99.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(65) synthase TruC"
                     /protein_id="HAY8871073.1"
                     /translation="MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG
                     QHVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDY
                     PLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGR
                     KHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLT
                     IHAGLDDTWMQALSQFGWRGLLPENERVEFSAPSGQDGEISS"
     gene            complement(19481..19810)
                     /locus_tag="JN125_001233"
     CDS             complement(19481..19810)
                     /locus_tag="JN125_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqcC family protein"
                     /protein_id="HAY8871074.1"
                     /translation="MTTHDRVRLQLQALEALLREHQHWRNDEPQPHQFNSTQPFFMDT
                     MEPLEWLQWVLIPRMHDLLNNNQPLPGAFAVAPYYEMALATDHPQHALILAELEKLDA
                     LFADDAS"
     gene            complement(20432..20977)
                     /gene="syd"
                     /locus_tag="JN125_001234"
     CDS             complement(20432..20977)
                     /gene="syd"
                     /locus_tag="JN125_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SecY-interacting protein"
                     /protein_id="HAY8871075.1"
                     /translation="MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIIST
                     TEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQ
                     TWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGT
                     RKRTHLASNLAEFLNQLKPLL"
     gene            21045..21893
                     /gene="queF"
                     /locus_tag="JN125_001235"
     CDS             21045..21893
                     /gene="queF"
                     /locus_tag="JN125_001235"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HAY8871076.1"
                     /translation="MSSYANHQALAGLTLGKSTDYRDTYDASLLQGVPRSLNRDPLGL
                     KADNLPFHGTDIWTLYELSWLNAKGLPQVAVGHVELDYTSVNLIESKSFKLYLNSFNQ
                     TRFNNWDEVRQTLERDLSTCAQGKISVALYRLDELEGQPIGHFNGTCIDDQDITIDNY
                     EFTTDYLENATCGEKVVEETLVSHLLKSNCLITHQPDWGSIQIQYRGRQIDREKLLRY
                     LVSFRHHNEFHEQCVERIFNDLLRFCQPEKLSVYARYTRRGGLDINPWRSNSDFVPST
                     TRLVRQ"
     gene            22005..23369
                     /gene="ppnN"
                     /locus_tag="JN125_001236"
     CDS             22005..23369
                     /gene="ppnN"
                     /locus_tag="JN125_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide 5'-monophosphate nucleosidase"
                     /protein_id="HAY8871077.1"
                     /translation="MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNS
                     GSLTDNSKELLSRFENFDINVLRRERGVKLELINPPEEAFVDGRIIRALQANLFAVLR
                     DILFVYGQIHNTVRFPNLNLDNSVHITNLVFSILRNARALHVGEAPNMVVCWGGHSIN
                     ENEYLYARRVGNQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPS
                     IIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPA
                     NKDQVLPLILTGPKESADYFRVLDEFVVHTLGENARRHYRIIIDDAAEVARQMKKSMP
                     LVKENRRDTGDAYSFNWSMRIAPDLQMPFEPSHENMANLKLYPDQPVEVLAADLRRVF
                     SGIVAGNVKEVGIRAIEEFGPYKINGDKEIMRRMDDLLQGFVAQHRMKLPGSAYIPCY
                     EICT"
     gene            23926..25215
                     /locus_tag="JN125_001237"
     CDS             23926..25215
                     /locus_tag="JN125_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease"
                     /protein_id="HAY8871078.1"
                     /translation="METTQTSTIASKDSRSAWRKTDTMWMLGLYGTAIGAGVLFLPIN
                     AGVGGMIPLIIMAILAFPMTFFAHRGLTRFVLSGKNPGEDITEVVEEHFGIGAGKLIT
                     LLYFFAIYPILLVYSVAITNTVESFMSHQLGMTPPPRAILSLILIVGMMTIVRFGEQM
                     IVKAMSILVFPFVGVLMLLALYLIPQWNGAALETLSLDTASATGNGLWMTLWLAIPVM
                     VFSFNHSPIISSFAVAKREEYGDMAEQKCSKILAFAHIMMVLTVMFFVFSCVLSLTPA
                     DLAAAKEQNISILSYLANHFNVPVIAWMAPIIAIIAITKSFLGHYLGAREGFNGMVIK
                     SLRGKGKSIEINKLNRITALFMLVTTWIVATLNPSILGMIETLGGPIIAMILFLMPMY
                     AIQKVPAMRKYSGHISNVFVVVMGLIAISAIFYSLFS"
     gene            25273..26640
                     /gene="sdaB"
                     /locus_tag="JN125_001238"
     CDS             25273..26640
                     /gene="sdaB"
                     /locus_tag="JN125_001238"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase II"
                     /protein_id="HAY8871079.1"
                     /translation="MISVFDIFKIGIGPSSSHTVGPMKAGKQFTDDLIARNLLKDVTR
                     VVVDVYGSLSLTGKGHHTDIAIIMGLAGNLPDTVDIDSIPGFIQDVNTHGRLMLANGQ
                     HEVEFPVDQCMNFHADNLSLHENGMRITALAGDKVVYSQTYYSIGGGFIVDEEHFGQQ
                     DSAPVEVPYPYSSAADLQKHCQETGLSLSGLMMKNELALHSKEELEQHLANVWEVMRG
                     GIERGISTEGVLPGKLRVPRRAAALRRMLVSQDKTTTDPMAVVDWINMFALAVNEENA
                     AGGRVVTAPTNGACGIIPAVLAYYDKFIREVNANSLARYLLVASAIGSLYKMNASISG
                     AEVGCQGEVGVACSMAAAGLAELLGASPAQVCIAAEIAMEHNLGLTCDPVAGQVQVPC
                     IERNAIAAVKAVNAARMALRRTSEPRVCLDKVIETMYETGKDMNAKYRETSRGGLAMK
                     IVACD"
     gene            26662..27507
                     /gene="xni"
                     /locus_tag="JN125_001239"
     CDS             26662..27507
                     /gene="xni"
                     /locus_tag="JN125_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311685.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flap endonuclease Xni"
                     /protein_id="HAY8871080.1"
                     /translation="MRGLFPISHPAVACSGIECYPYRLIFKGVIVAVHLLIVDALNLI
                     RRIHAVQGSPCVETCQHALDQLIMHSQPTHAVAVFDDENRSSGWRHQRLPDYKAGRPP
                     MPEELHDEMPALRAAFEQRGVPCWSTSGNEADDLAATLAVKVTQAGHQATIVSTDKGY
                     CQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPDYWGLAGISSSKVPGVAGIGPK
                     SATQLLVEFQSLEGIYENLDAVAEKWRKKLETHKEMAFLCRDIARLQTDLHIDGNLQQ
                     LRLVR"
     gene            complement(27612..28749)
                     /gene="fucO"
                     /locus_tag="JN125_001240"
                     /pseudo
     CDS             complement(27612..28749)
                     /gene="fucO"
                     /locus_tag="JN125_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417279.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lactaldehyde reductase"
     gene            complement(28777..>29218)
                     /locus_tag="JN125_001241"
     CDS             complement(28777..>29218)
                     /locus_tag="JN125_001241"
                     /EC_number="4.1.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="L-fuculose-phosphate aldolase"
                     /protein_id="HAY8871081.1"
                     /translation="PSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVSILNRPIPAIHY
                     MIAAAGGNSIPCAPYATFGTRELSEHVALALKNRKATLLQHHGLIACEVNLEKALWLA
                     HEVEVLAQLYLTTLAITDPVPVLSDEEIAVVLEKFKTYGLRIEE"
BASE COUNT         7185 a         7706 c         6952 g         7375 t
ORIGIN      
        1 gtgttacgtg gatatgttgc ttattacaag tactgctaat ataaaaactt gagaaagaga
       61 taacgggtta tatggtggtt tatccccgct ggcgcgggga actctgtaaa cataacctat
      121 tattaattaa tgatttttta agccagtcac aatctaccaa ctttacagta tcacacaaac
      181 aacacatcca ttatgttaaa gagtacttaa gtcattgatt aaaaaggtaa atatttaaaa
      241 taactctata caaattaaaa tctaccaaac tttaccgcaa taattttcac tccagcgaaa
      301 aattaatgcc acagaatttg tagagaatgc taatgattag ccctggatgg gtaaaatgga
      361 ggagttttca gaggcgacaa acaatataaa tgagtagaag tctttacagg ttccacccat
      421 ttataacgct tataaatgtt taatcaggca atatttagat atttatgtgt ttgcatcgac
      481 aaacgccaat tacgcgcaat gcaggtttca atgcacaaac gtgtggcatc atccttttgg
      541 ctaatcggct gcagtgcaat gactcgcggt ttatcatcgg tcagcgttgc caatagttca
      601 tccagtgctt caatatcgcg tacgcgcccc actggatgct tgatttcgtt ggctcgctcc
      661 agtgcctgtg acaacacgtc atagccgccg cgcatgttca gctttggcga tacggtaacc
      721 caggtattcg gtgtgcagcg tacttcatga gttccactgg tttcgatctg gcagctaaaa
      781 ccgttctttt cgagcaggtc agtcagtggc agcaaatcat gaatgcaagg ctcaccaccc
      841 gtaatcacca catgccgcgc ggtatatccc tgccgaccaa tgacagccag caaatcttca
      901 ctgctcgccg ccccccactt atcactctct ttggtcttcg ccagaatgct gaaaagggag
      961 acttcccgat cctcaagctt ttcccaggtg tgtttggtgt cgcaccaggc acagccaacc
     1021 gggcatccct gtaaacgaat aaaaatggcg gggacgccgg taaagtaacc ctcaccttgc
     1081 agggtctgga acatctcgtt aatcgggtac tgcatagcat tctctgtgaa gtggataatt
     1141 gttaattatt gcagatcctg ccgcaacaat catgtcttat taacattctg ttacatgcag
     1201 atttaaagaa aaatgcgaaa catatcgtta ataattaaag ggagtaacgt attatgtcag
     1261 aagaaaataa agaaaatgga tttaatcatg tcaaaacatt caccaaaatt atatttattt
     1321 tttctgtatt agtttttaat gataacgagt ctaaaattac cgatgccgcc gtcaatttat
     1381 ttatccagat ttaatgagaa atttataatg cgctatttca tactaatgtt cactttcgta
     1441 tgttcctttg ttgcagccca accaactatt gtcccacaat tacagtaaca agttacggat
     1501 cttacgagta gcttaaactc acaagaaaag aaagaactga cgcacaagtt agaatctatt
     1561 ttcaataata cccaagtgca aattgctgta ttaattgttc ccacaaccaa agacgagaca
     1621 attgaacaat atgctacaag agtttttgac aattggcgtt taggagatgc caaacgtaat
     1681 gatgggatac tgatcattgt tgcctggtca gatcgtactg tccgcatcca ggtaggttat
     1741 gggctggaag aaaaggtaac cgatgctctg gctggagata tcatccgtag caacatgata
     1801 cccgcattta aacaacaaaa atttgctcag ggattagagc tagctataaa cgctttgaat
     1861 aaccaactca cttcacaaca ccaatatccg actaatcctt cagaaagtga atcagcgtct
     1921 tccagtgatc attattactt tgctattttt tgggtatttg cagtgatgtt cttccctttc
     1981 tggttttttc atcaaggcag taatttttgt cgcgcatgta aaagtggagt ctgtatttca
     2041 gcaatctatc ttttagattt attcctgttc tccgataaaa ttttttccat tgctgtattt
     2101 tccttctttt ttactttcac catatttatg gtctttacct gtttatgtgt acttcagaaa
     2161 agagcatcag gtaaaagtta tcattcagac aacagcggtt ccggtggagg ctcaagtggc
     2221 ggcggattta gcggcggtgg cggttcttct ggaggtggcg gcgcatccgg ccgctggtaa
     2281 ctcaaccata aaaaatgcca tcccggaggc tggcattttt aaatcagata aagtcagtct
     2341 tatgcctggc ctttgatctc tttacgaccg ttgtacggtg ctttttcgcc cagagcttct
     2401 tcgatacgaa tcagctggtt gtatttagca acacggtcag aacggctcat agaaccagtt
     2461 ttgatctggc ctgcagcagt accaacagcc aggtcagcga tggtagcgtc ttcagtttcg
     2521 ccagaacggt gagagataac tgcagtgtag ccagcatctt tcgccatctt gattgcagcc
     2581 agagtttcgg tcagagaacc gatctggttg aatttgatca ggatggagtt agcgatacct
     2641 ttttcgatac cttctttcag gatcttggtg ttggttacga acaggtcgtc accaaccagc
     2701 tggattttgt cgcccagaac tttggtctgg tatgcgaaac cgtcccagtc agattcgtcc
     2761 agaccgtctt cgatagaaac gatcgggtac tgtttggtca gttcttccag gaagtgagtg
     2821 aattcttcag aggtgaacgc tttgttgcct tcgccagcca gaacgtattt accatctttg
     2881 tagaattcag aagctgcgca gtccatcgcc agagtgatgt ctttgcccag ttcataacca
     2941 gcagctttaa cagcttcagc gataacagcc agagcttcag cgttggaacc caggttcggc
     3001 gcatagccac cttcgtcacc aacagcagtg ttcatgcctt tcgctttcag aacttttgcc
     3061 aggtgatgga aaacttcaga acccatgcgg atggcttctt tcacagtttt cgcgccaacc
     3121 ggctgaatca tgaattcctg gatatcaacg ttgttgtcag cgtgctcacc accgttgatg
     3181 atgttcatca tcggaaccgg catagagtat ttgcccggag taccgttcag ttcagcgatg
     3241 tgctcgtaca gcggcatacc tttagcagct gcagcagctt tggcgttagc cagagataca
     3301 gccaggattg cgttcgcgcc gaatttggat ttgttttcgg tgccgtccag gtcgatcatg
     3361 atcttgtcaa tgccagcctg atctttagca tctttgccaa tcagcgcctg agcgatcggg
     3421 ccgtttaccg cagcaacagc tttggttacg cctttaccca ggaaacggga tttgtcgcca
     3481 tcgcgcagtt ccagagcttc acgggaacca gtagaagcac ctgacggagc agctgccata
     3541 ccgacgaaac caccctccag atgtacttcg gcttcaacag tcgggttacc acgggagtcg
     3601 atgatttcac gaccgatgat ttttacgatt ttggacatta ggttttcctc aagtcactag
     3661 ttaaactgaa actccagaca aacaacgcgt acccagggta cgcgttgccg ttctaacttt
     3721 tttacttact tcgcctgacg tttctggaac tcgctggcgg ctttcacaaa gcctgcaaac
     3781 agcgggtgac catcacgtgg agtagaagta aactccggat ggaactggca agccacgaac
     3841 cacgggtgat tcggaacttc gatgatctcg accaactgat catccccgga acggcccgca
     3901 acgcgcagac ctgcatcttc aatctgtttc aacagcatgt tgttgacttc gtaacggtga
     3961 cgatgacgct caacaattgt cggcgcattg tacagctggc gaaccaggct atcgtcaacc
     4021 aactggcact gctgtgcgcc gagacgcatg gtaccgccga gatcgctctt ctcgctacga
     4081 acttcaacgt tgccgttttc atcgcgccac tcggtaatca gcgccacaac cgggtactta
     4141 cagtctggca caaattccgt agagttggcg ttctccatgt tggcaacatg gcgagcgtaa
     4201 tcaattaacg ccacctgcat acccaggcaa atgcccagat aaggaatatt gttctcacgc
     4261 gcaaaacgcg cggtcgtaat catgccttct acgccacgat agccgaaacc gccaggtacg
     4321 aggattgcgt ccagaccttt aaggatttca acgccgcgcg tttcaacatc ttgtgaatcg
     4381 atcagtttga tgttgacgct gacacgattc ttcagcccac cgtgtttcag tgcttcgatc
     4441 actgatttat aagcatccgg cagttcaatg tacttgccga ccataccgat ggtgacttca
     4501 cttaccgggt tcgcttcttc gaagataacc tgttcccatt cggacagatt cgcttccggg
     4561 cagtttaagc tgaatcgttt acaaatataa tcgtccagcc cctgagattt caacaggccc
     4621 ggaattttat agatggaatc gacgtctttc agagaaataa ccgctttttc cggaacatta
     4681 cagaacaatg caatcttcgc acgttcgttc gccggaacag cgcgatctga acgacaaatc
     4741 aggatgtcag gctggatacc gatggagagc agctctttta cagagtgctg agtcggtttg
     4801 gttttgactt caccagacgc tgccatgtac ggcaccagcg tcaggtgcat aaacagagtg
     4861 tgctcacggc caatttcaac agccatctgg cgaatcgctt cgaggaacgg caaggattcg
     4921 atatcaccta ctgtaccgcc gatttctacc agtactacgt catgaccttc gccaccttcc
     4981 agcacgcgct ctttgattgc gttagtgatg tgcggaataa cctgcacggt tgcgccgagg
     5041 tagtcaccgc ggcgttcttt acgcagaacg tcagagtaga tacgacccgt ggtgaagttg
     5101 ttgcggcggc tcattttggt acgaatgaaa cgctcgtagt gccccaggtc caggtcggtt
     5161 tcagcgccgt cttcagtaac gaacacttcc ccgtgttgga ttgggctcat agtacctgga
     5221 tcgacgttga tgtacggatc cagtttcatg atggtcacat tgaggccacg ggcttcaaga
     5281 atggctgcga gggaggctgc ggcaatgcct ttacccagag aggatacgac cccgccggtc
     5341 acaaaaatat agttcgttgt catgctgaac ctgagaagtt aggttgaaaa gacgatggaa
     5401 taacctggac gggaaagcag tatacccgaa catgacctgt gccacaaact ttcattatcc
     5461 ctcctcttcg ccagcgcact attgaaatca ggagtgagaa aatagcccct ttggggtaaa
     5521 tgtttttgac gcaaatcaag cgcttgtcat taaaaaaatg acacaaatgg cgcttgaccg
     5581 cgtaattccc ttagagatca atttcctgcc gttttacctg ttgccagact tcttccattg
     5641 tttcgaggtc aacacctgtc atttccagtc cacgcgcggc aacaatacgc tccacttcgc
     5701 gaaaacgacg ctcgaatttt tcgttcgctt tttgcaatgc gatttctgct ttcgtcccta
     5761 aatggcgagc cagattaacc gtggcaaaca gcaggtcccc catttcctcc tccagtttag
     5821 cctggtcgac aacagcctgc cgcgcctcgt acatcacctc gtcgatctct tcgtagactt
     5881 tatcaaccac cgggccaagc gtcgtccagt cgaagccaac gttggcgcaa cgtttctgga
     5941 ttttttgcgc ccgcattaaa gccggtaaac tacgaggaat atcgtccagc gccgaatgct
     6001 gcgctttctg cgcgcgctct tcggttttga tttgctccca acgggcaagc acttcactac
     6061 tgttttcggc agaactatca gcaaaaacat gcggatggcg acgctctaat ttatcgctaa
     6121 tagcagcgca aatatcatta aagtcaaagc gcccttcttc ctgagccatt tgcgcgtaaa
     6181 acaccacctg gaatagcaga tcgcccagtt caccgcgaag atcgtcaaaa tcttcacggg
     6241 cgatggcgtc cagcacttcg taggtttctt caagggtgta aggcgcaatg gtggcaaatg
     6301 tctgctcttt atcccacggg cagccgtttt ccggatcgcg caggcgctgc ataatagtga
     6361 gcaaacgatc gatttgattc attgaattgt cctgaaaatt gcgggtctgt caggtggaaa
     6421 cctgtgacca gaatagaagt gagttagtaa cactacccaa tcagtacgtt aattttggct
     6481 ttaatgagtt gtaattcctc tggggcaact gttcctttct tcgttgctcc tcttgcccgc
     6541 caggcgattc tttttacctg atcagctaac gctacgccat cacgttcctg accggataaa
     6601 acaacttcga acggatatcc ttttgattgc gttgtacaag gaacacacag acacatacct
     6661 gttttgttgt tgtacatgaa aggactcagg acaacagctg gacgatgtcc agcttgctcg
     6721 ctaccttttg tcgggtcaaa atcaacccaa atcagatcgc ccatatcggg tacgtatcgg
     6781 cttaccatta ccagacttcc ttatctttcg gctctcccca gtcgatattc tcgtggaggt
     6841 tttccggcgt gatgtcgttg accagttcag caagcgtaaa tacgggctct ttacgcactg
     6901 gctcaataat taatttgcca tccaccaggt caatcttcac ttcatcatca atattcagat
     6961 tgagcgcctg cattaacgta gccgggatcc gcaccgccgg tgaatttccc caacgcttta
     7021 cgctactgtg gatcataacc cttttctcaa accgctatca tatgtagata cagtatatat
     7081 caatctatat tgtagatacg agcaaatttc tgcctaactc ccgtgcaacc gacgcgcgtc
     7141 gataacatcc ggcacctggt tgagtttacc cagcacgcgg cccagcacct gcaggttgta
     7201 aatctcaatg gtcatgtcga tggtcgccag ttgctgtttg gtgtcgctac ggctggcaac
     7261 gccaagtacg ttcaccttct cgttggcgag aatggtcgtg atatcacgta acaacccact
     7321 acgatcatta gccaccacgc ggaccaccag cgaatatccg gcggagtagc tctcacccca
     7381 taccgcgtca acaatgcgtt ctggcgcatg agagcgcagt tccgccagtt gttcgcaatc
     7441 ggcgcggtgt actgaaatac cgcgcccctg ggtaatgaag ccgacaatct catctccagg
     7501 aatcggctgg cagcagcgcg cgatgtggtg catcaggttg ccaacacctt cgactaccac
     7561 gcgaccgtta tctttactgc ggttttgcgg cgtgtagctt ttttgctgaa gttgcttcag
     7621 cgcggcggcg tcctgctctt cggcactcgg cttattaaat tgcgattgca ggaagttcac
     7681 catctgattg agacggatat ccccgccacc aatcgccgcc agcaactcgt cgacatcatt
     7741 aaagttgtaa cgcggcagca gatgtttttc tgcttctttc aggctgatcc ccagatgttc
     7801 cagctcgtcg tcaaggattt gccgcccagc cagaatgttt ttgtcacggt cctgtttacg
     7861 gaaccaggcg tgaattttcg aacgcccacg gctggttgtg acgtaaccga ggtttgggtt
     7921 taaccagtca cggctggggt tcggctgttt ctgggtgata atttcaatct ggtcgcccat
     7981 ctgcagctgg taggtgaacg gcacaatgcg cccgccaatt tttgccccga tgcagcggtg
     8041 tccgacatca ctgtggatgt ggtaagcgaa gtccagcggc gttgatcccg caggcaaatc
     8101 aacgacatca cctttcggcg taaagacata cacccggtcg tcaaagacct ggctgcgtac
     8161 ttcgtcgagc atttcgccgg aatcagccat ctcttcctgc cacgcaatca gtttacgcag
     8221 ccaggcaatc cggtcttcat gtcccgaacg tgcgccgcca gctgccgcgc cctctttata
     8281 tttccagtgc gcagcaacac ccaactctgc atcttcatgc atctgtttgg tgcggatttg
     8341 gatctcaacg gttttgccac ctggccccag aaccacggta tgaatagact gataaccgtt
     8401 tggtttcggg ttagcgacat aatcgtcaaa ctcatccggc aggtggcgat agtgagtgtg
     8461 cactatcccc agtgcggcat aacaatcctg taaacgctcg gcgacaatac gtaccgcacg
     8521 cacatcaaac agctcatcga aggcgaggtt ctttttctgc attttgcgcc agatgctgta
     8581 gatgtgtttc ggacggccat acacttcagc tttaacgcct tcagctttca tctcagcgcg
     8641 cagatgaccg acaaactctt cgatatagtg ttcgcggtcg agacggcgtt catgcagcag
     8701 ttttgcgatg cgtttgtatt cggtcgggtg cagataacgg aagcagtaat cttccagctc
     8761 ccatttcagt tgcccaatcc caagacggtt cgccaacggc gcgtagatat tggtgcactc
     8821 ttttgccgcc agtacgcgtt catcttccgg cgcatctttt acttcgcgca gatgagcaat
     8881 acgctccgcc agtttgatga ccacgcagcg aaaatcatcg accatcgcca ataacatccg
     8941 gcgaacgtta tcgacctgtt cggaggaaac agaatcagtg tgcgtcgctt tcagctggcg
     9001 gatcgccgcc atatcacgca cgccgtgaat aaggttaacg acagacttac cgacgctctc
     9061 acgcagcaca tcttcgctga ctacgttggc atcggccaga gggaacagca gcgccgcccg
     9121 cagcgtgtca atgtccatac ttaatgtcga gaggatctcc accatctcaa caccacgcca
     9181 caataacaga ctggcatccg gatgcccctg cgtctgctgc agacaatacg cccaggtttc
     9241 ggctaagcac tcacacgact tctggctggt aatacccaga cttgcgatcc atttttccgg
     9301 atcaaatcca ccagccttat tgatatgtgc acttcttacc gcaaccattg tcctctcctt
     9361 tagggaccag acctgccgaa atcggcaaat cgtaactatt taacgcgcga gaaaagtacc
     9421 atcgattcca gatgtcccgt gtgtgggaac atatccagca tcgccagtcg cgcaatggta
     9481 tatcctgctt ttaataacgc ttcgctatcc cgagccagcg ttgcagggtt acaggataca
     9541 taaactatac gaataggttc cagttttata atttgctgca taacacctgc ggcacctgct
     9601 cgcgccgggt ccagcaacac tttatcgaag ccgtttttcg cccacggctg ctttgtgaca
     9661 tcttcttcaa gattttcgtg ataaaacgtc acattctgta agccattaag acgcgcattc
     9721 tgctggcctt tttccaccag cgccggaaca ccttctacac cgaccacact ggcagcttgt
     9781 gtcgccaatg gcagtgtaaa gttgcccata ccgcagaaca gatccagtac gcgatcttca
     9841 ggttgcacat ccagccattc caacgcactc gctaccattt tttggttcac acccgcattg
     9901 acctgaataa aatcgcgcgg gctaaaagtt aagcgcaacc cgttagagtc ataccagggc
     9961 atctcaccag agacggtttc gagtatctca ctatcggggg cgagatacag atccaggcct
    10021 tcagaatgcg aaaagcgttc cagtttttcg cgatctgccg aacttagcgg tgcggtatgg
    10081 cgcaaaatca tcagcgtgct gctggttgcc tgtaccagtt caacatgacc aagatggcgc
    10141 attgcttgta agctgcccag gcatgccctg actttgggca gcaatgcttc aagttggggc
    10201 actaaaatgg gacattgttt aacgtcgaca atgtcactgg agcccgcttt gcgaagcccc
    10261 atctgaagtt gctgtgtttt cggtaagtag ttcagactta aacgcgcgcg acggcgatag
    10321 ccccagggaa catcggcgat cacttcagag acttcgtgtt tcattaatcg ggcgagtgcc
    10381 gcacttttgc ttcgctgctg taaatccacg ctggcgtgtt gttgctgaca gccgccgcat
    10441 actccaaaat gaggacagcg tggcgtttcg cgttccgggc tatcgcttaa ccggcgtacg
    10501 actttagcgc gggcatactg ttttttatct tcagtaacag taacttccgc gttttcctgc
    10561 ggcaataatc cggggataaa tagcgttttg ccgttatgtc gcgccacgcc ctgaccaaaa
    10621 gagtcgaggt cgttgactga aacggttatg atctgacgcg tcgtcgtgcg tcgttttgca
    10681 gagtagaatt gcgccattgg cgagactttc tcaatttaac agtgtgacct taattgtccc
    10741 ataacggaac tccatgacca actacagcct gcgcgcacgc atgatgattc tgatcctggc
    10801 accgaccgtc cttattggtt tattgctgag tatctttttc gtcgtgcatc gctataacga
    10861 cttgcagcgt caactggaag atgccggtgc cagcattatt gagccgcttg cagtttctac
    10921 tgaatatggc atgagcctgc aaaatcgcga atctatcggt cagttaataa gcgtactgca
    10981 tcgtcgccat tccgatattg ttcgcgcgat ttcggtttat gatgaaaata accgactctt
    11041 tgtcacctcc aattttcatc ttgatccctc atcaatgcag ctcggcagca acgtgccgtt
    11101 tcctcgccag ctcactgtca ctcgtgacgg cgatattatg atcctccgca cgccgattat
    11161 ttctgagagt tactcccccg acgaatcgcc cagtagcgat gccaaaaata gtcaaaatat
    11221 gttgggatat attgcgcttg agctggatct taaatcggtt cgcttgcagc aatataaaga
    11281 gatctttatt tccagcgtga tgatgctgtt ttgtatcggt attgcgctta tttttggctg
    11341 gcgcttaatg cgcgatgtaa ccggtccgat tcgcaacatg gtgaataccg tcgaccgcat
    11401 ccgtcgcggg caactcgaca gccgggtgga aggatttatg ctcggcgagc tggatatgct
    11461 gaaaaacggt atcaactcga tggcaatgtc gctggctgct tatcacgaag agatgcagca
    11521 caatatcgac caggcgacgt ccgatctgcg tgaaacgctg gagcagatgg aaattcagaa
    11581 cgttgagttg gatctggcga aaaagcgcgc ccaggaagcg gcgcgtatta aatccgagtt
    11641 tctggcaaat atgtcacacg agctgcgtac accactgaat ggtgttattg gctttacccg
    11701 cctgacgctg aaaacagaat taacaccaac gcagcgcgat cacctgaata cgattgaacg
    11761 ttcggcaaat aatttgctgg caattattaa tgatgttctc gacttctcga aactggaagc
    11821 aggtaagctg attctggaaa gtattccatt cccactacgc agcacgctgg atgaagtcgt
    11881 tactctgctg gcacattctt ctcacgataa agggttggaa ctgacgctca atattaaaag
    11941 cgacgtgcct gataacgtga tcggcgaccc actgcgatta cagcaaatca tcactaacct
    12001 ggtggggaat gcaattaaat tcaccgagaa tggcaacatt gatattctgg tagaaaaacg
    12061 tgcgctgagt aataccaaag tgcagattga agtgcagatt cgggataccg gcattggtat
    12121 tcctgaacgc gatcaatcgc gcttattcca ggccttccga caggctgatg ccagtatttc
    12181 ccgccgtcat ggtggcaccg ggctggggct ggtgattaca caaaaactgg ttaatgaaat
    12241 gggcggcgat atttcgttcc atagccagcc gaatcgcggt tcaactttct ggttccacat
    12301 taatctcgat ctgaacccga acattattat cgaagggcca tccacccagt gcctcgcagg
    12361 taagcgcctg gcctatgtcg aaccaaactc cgcagcagcg caatgcacgc tggatatttt
    12421 aagtgaaacg ccgctggaag tggtttatag cccaacgttc tccgcgctgc ctcccgcgca
    12481 ttacgacatg atgttgttag gcatcgcggt gaccttccgc gagccgctaa caatgcaaca
    12541 tgagcgatta gcgaaagcgg tatcgatgac cgatttcctg atgctggcac ttccttgcca
    12601 tgcacaagtc aatgctgaaa aactcaagca agatggtatc ggcgcgtgtc tgctgaaacc
    12661 attaacacct acacgcctgt tgcctgccct gacggaattt tgtcatcaca aacaaaacac
    12721 gcttttgcct gtaaccgatg aaagtaagct ggcaatgaca gtcatggcgg ttgatgacaa
    12781 ccccgctaac ctgaaactta tcggcgcatt gctggaagat atggtgcaac atgtggaact
    12841 ttgcgatagc gggcatcagg cggttgaacg ggcgaaacag atgccgttcg atttgatctt
    12901 aatggatatt caaatgccgg acatggatgg cattcgggcc tgcgaactca tccaccagct
    12961 cccccatcag caacaaacgc cggttatcgc ggtaacggcg catgcaatgg ccgggcaaaa
    13021 agagaagctg cttggcgcag ggatgagcga ttatctggcg aaaccgattg aagaagagcg
    13081 attgcataat ttgttgttgc gctacaagcc tggcagcggt atttcctctc gcgtcgtgac
    13141 gcccgaagtc aacgaaattg tggtgaaccc gaatgcgacc ctcgactggc aactggcact
    13201 acggcaggca gcaggaaaaa ccgatttagc gcgcgatatg ctgcaaatgt tactcgattt
    13261 cctgcctgaa gttcgcaaca aagttgagga acagctggtt ggagaaaacc cggaaggcct
    13321 ggttgatttg attcataaac tgcatggcag ttgcggctat agcggtgtgc cgcgtatgaa
    13381 gaatctctgc caactgatcg aacaacagct acgtagcggt actaaagaag aagatttgga
    13441 gccggagctg ctggaactgt tggacgagat ggataatgtc gcgcgcgaag ccagcaaaat
    13501 tctcgggtaa cggacgtctt gtcgagtagc aatcggcttt ttatgacgct ggtttcagat
    13561 tggtgacaaa gtgcctgtgt ttatgccgga tgcggcgtta acgccttatc cggcctacaa
    13621 aaccaattaa attcaatgaa ttaaaaaatg atgtagacct gatacatagc acaacaggct
    13681 attttgcgtt tagcatcagt ctcaagccgg ctccagatag agccggtttt gtttttctgt
    13741 cttaacgcac catgcacggg cgcttgttat cgaacgtcca gccaggaatc agatactgca
    13801 ttcccatcgc atcgtcacgc gcgcaaagcc cgtgtttctg atacagctca tgggctttca
    13861 tcacttgatc catatcgatt tctacaccca gccccggttt ttccggcacc tgaaccagac
    13921 cgcctttgat ctcaaacggt tctttggtca agcgctgatt gccttcctgc caaatccagt
    13981 gcgtatcaat cgcggtgatt ttacccggtg cagcggcggc aacatgggta aacatcgcca
    14041 gggaaatatc gaagtggttg tttgagtgtg aaccccaggt caggccaaat tcatggcaca
    14101 tttgcgccac acgtaccgaa ccttgcatcg tccagaaatg cggatccgcc agcgggatat
    14161 caacggattg cagggagagc gtatggccca tctgccgcca gtcggtggcg atcatattgg
    14221 ttgcggtcgg caggccagtt gcgcgacgga actctgccat cacttcacgc ccggagaaac
    14281 cttgctccgc accacacgga tcttctgcat aagccagcga ccctttcagg tatttaccaa
    14341 ttttaatcgc ttcgttcagc gaccaggcac cgttaggatc gagcgtaata cgcgcctgcg
    14401 ggaagcgttg cgccagtgcc acaatagact cggcctcttc ttccccggcc agtacaccgc
    14461 ctttcagttt gaaatcgttg aagccatatt tttcatacgc cgcttccgcc aggcgcacca
    14521 ccgcatccgg cgtcatcgct tcttcatgac gcaggcgata ccagtcgcat gagtcatccg
    14581 gctggctttg atacggcagc ggtgtggctt tgcgatcacc gacgaagaac agataaccga
    14641 gcatttcgac ttcgctacgc tgttgaccat cgcccagcag ggatgccacg tttaccccca
    14701 gatgctgccc cagcagatcc agcattgccg cttctatccc ggtaactaca tgaatagtgg
    14761 tacgcaaatc aaatgtctgc aaaccgcgcc caccagcatc acgatcggca aaagtattac
    14821 gcaccagcgt cagaacgttt ttgtattcac ccagcgtttt acctaccacc agcggaatcg
    14881 catcttccag cgttttacgg attttctcgc cgccgggaat ttcccctacg ccagtgtgac
    14941 cagaattatc tttgataatc ataatattac gcgtaaagaa cggtgcgtgt gcaccactca
    15001 gattcatcag catactgtca tgacccgcca ccgggatgac ctgcatttca gtaacaacag
    15061 gcgtcgtaaa ttgagaactc atatttatgt cctttttcag aatcaatgac ggccgaaaac
    15121 gggacgttta cggtcaaagg tccagccggg gatcaggtac tgcatcggac ctgcgtcgtt
    15181 acgcgcaccg ccaggcagac gtttataggc ctcatgtgcc ttttgtacct gtttccagtc
    15241 cagttccacg cccagaccgg gcgcatcagg aacggcaatt tttccgtttt taatctccag
    15301 cggatttttg gtcaggcgac aatcgccctc ctgccaaatc cagtgggtat cgatagcggt
    15361 aggattaccc ggtgccgccg cgcccacatg ggtaaacatc gccagagaga tatcgaaatg
    15421 gttattagaa tggcagcccc aggtcagccc ccagtcgtcg caaagctgcg ccacacggac
    15481 tgcaccggaa agcgtccaga agtgcggatc ggcaagtgga atatctaccg cattgagcat
    15541 caccgcatga cccatttcgc gccagttggt ggcgatcatg ttagtcgcga cgggcaagcc
    15601 ggtcgcccgc cgaaactccg ccataacttc acgaccggag aaaccctgtt ctgcgccgca
    15661 tggatcttcg gcataggtaa gaacatcatt cagccctttg catagagaaa tggcttcatc
    15721 aagtagccag gcaccgttgg gatcaacggt aatccgcgca tcagggaagc gtttcttcaa
    15781 tgcacgaaca gtgttgattt cttgctcgcc aggtaacacc ccgcccttaa gtttgaaatc
    15841 tttaaagcca tagcgatcct gtgaggcttc cgccagacgc acaacggctt cgctgttcat
    15901 cgctttctga tggcgcaact gataccactc atggttgccc ggcgtatttt ccagataagg
    15961 aagatcggtt ttggtccgat caccgatata aaacagataa ccgaggacgg taatagtctc
    16021 gcgttgcttg cctggcccca acagttcgca gaccggaaca ttcagcgcct tacctagcag
    16081 gtcaagcaag gcggcttcca gcgccgccac ggcattaacg cgcaattcaa aagtctaggc
    16141 acctttgccg aaggtatcaa aatcggctgc ctgattacct ttatgcacct gctgaaccac
    16201 tttattcagg cgcgcaactt cctggcccag aaccatcgga atagcatcga ccagtgtttg
    16261 ataaatcacc tctccgcccg gcgcttcacc aatgccggta tgcccggcgt tatcggtgag
    16321 taccacaata ttgcgggtga aatatgcgtt atgtgcccca ccaatattaa gcaacatgct
    16381 atcgtgcccg gcgaccggaa tgactttcat atcagtaata acaggactgg attgtgtcgt
    16441 catcttattg ccccgcgaca ggtttcagct cgatacgctt gatatcgccc accagcacca
    16501 ggtagctcag taccgcgatt aaggcatgaa caccaacata aatcagcgcc ccattaaagg
    16561 agctagtcgt gccaacgata taaccaattg cgattggcgt gacgatgcca gaaatgttac
    16621 cgaacatgtt gaacaggcca ccggaaagac cgctgatctc ttttggcgcg gtatctgcca
    16681 ttactgccca acccagcgcc ccgatgccct taccgaagaa ggccagcgcc ataaagccga
    16741 tgatcatcca ctcaacgttg acgtagttgc agaacaccat caccatcgac agcaacatgc
    16801 ccattacgat cggtgtttta cgcgcaatgt tcagcgatcc cgtgcggcgc atcagccagt
    16861 cggaaataat cccacccagc acaccgccga taaaaccgca aaccgccgga acggaagcca
    16921 caaagcccgc tttcagaatc gacatcccac gcgcctgcac cagataaacc ggaaaccagg
    16981 taatgaaaaa gtaagtcagg gcgttgatac agtactgacc gatataaacg ccgatcatca
    17041 tccgtgaccc gagcagttgt ttgatctgcc cccacttcac gctgaacggc actttaactt
    17101 tggtgttttg ctgatccata ttgatcagcg cgccacccgc ggcgatgtac tccagctctt
    17161 tctgatttac ccccggatgt tgatttggct cgtggatgac tttcaaccag ataaagctga
    17221 tgacaatccc cagaccgccc ataaagaaga agacgtgtga ccagcccact tcatgcgtca
    17281 gccagcccat aatcggcgcg aagatcaccg ttgcgaagta ttgagcggag ttaaaaatcg
    17341 acaccgccgt tcccctttcc tgcgccggaa accaggccgc aacaatgcga ctgttgccgg
    17401 ggaaagatgg cgcttcagca agcccgacca ggaagcgcag agtaaacagg gcaacgataa
    17461 tgccgaatcc actaaagata tcgacgaagc cttgcagcaa ggtaaacatc gaccagataa
    17521 agatcgacca gaagtagacg cgttttgaac caaaacgatc cagcaaccaa ccaccaggga
    17581 tctgcccgat aacataagcc catgagaagg cagagaacac atagcccatt cccacgggat
    17641 caaggccgat atctttggcc atttccgaac cggcaataga aagcgtagcg cggtcgccgt
    17701 agttgaagga tgtgacgata aacaacatca ccactatcca gtaacgagca ttcgtgcgtt
    17761 tttccacact gctcgcagcc tgacttaaag aactcgttgt tgcactcctg aaaattcgcg
    17821 ttagccacgc tcactctgga ctgcgacata gccaggaaat cagaggtgac gtagggtgtt
    17881 ttttgccgtt tttataggtc gttcgccgaa tacggcgcgt gtttatatct ggcaatagca
    17941 gtataaaaag cgcgccatag cggctcaccg tgcaacaaca caacattaat gcgttcaatg
    18001 aggcccgatt ttggcattag ccctggacgg tggaatccac ttcacggaaa tgaaaacaag
    18061 aacaagaaag gaagggttaa aacaaagaaa taaagaagag tatgaaatgg atcgcttgac
    18121 tccaggcaaa cgccagtaaa aatccgcgct atgaagcagt ttttactggc atttgcctga
    18181 aaagattcga ttcagcaccg ctaaaacgac atttaccgct cgctgaacat atcaggacaa
    18241 cagcgtgccc cactgttcga cccacggatt tgattccgtt tccggttccg ggttctcact
    18301 ggcgtcaatc aacagcattt cgccaacccg ctgagcgctc tgttcctgca acaaggcatc
    18361 gaactgtttg ccgccattgc agaaatttac ataactgctg tcgccgagcg caatcacgcc
    18421 ataacgcaga ttcggctgga agcccagact atctttgatt ccctgaaaga gcggcacaat
    18481 gctatcagga aggtcgccct gcccggtcgt ggacgtaacc accagaacat acttatcctg
    18541 ataaggcagc cagtcgctta attcaggatc ttcaaatacc gttgctttgt ggccctgtgc
    18601 ggtcagaatt gcttctgctt cttccgccac taacagcgaa tttccgtaca tggtgccgac
    18661 aaaaatacca atttccgcca taccgttttc tccctggatt aggaacttat ctctccatcc
    18721 tgacccgatg gcgcactgaa ctcaaccctt tcattttcag gaagcagacc gcgccagcca
    18781 aattgtgata acgcctgcat ccaggtgtcg tccaggcccg cgtgaatagt cagcggctcg
    18841 ccagtaaaag gatgcgtcaa tgacaactga ctggcatgta gcattaaccg ctggaggcca
    18901 aaatgctcag caccgctgcg attctggcgt aaatcgccat gtttgctatc gccaataatc
    18961 ggatgacgca aatgggcaag atgtcggcga agctgatgtt tgcgtccggt tttcggctcc
    19021 agttccacca ggccgtagcg cgtggtcggg taacgtccgg tcgctaccgg catttctacg
    19081 gtcgccagac cgcgataatg cgtcactgct ggctgcgggc ctttatcttc gcgggcaaat
    19141 ttatcagcga ttttgtccag ttcttccacc agtggataat ccagcaccgc ttcttccatc
    19201 aaccatccgc gcacaatcgc atggtaacgt ttctggattt ggtgctgttc aaactgttgt
    19261 gccagcagcc gtccggcctc gctggataat cccatcaaca acacaccaga agtgggtcgg
    19321 tccagacgat gagcagtaaa aacatgctgt cctatctggt cacgcacggt ttgcatgacc
    19381 actactttct cgtcgcgatc cagccagcta cggtgaacca gccagccgga gggtttattt
    19441 accgcaacca gccattcatc ctgatagagt atttccagca ttagctcgca tcatccgcaa
    19501 aaagagcatc cagtttttcc aactcagcca gaataagcgc gtgttgcgga tggtccgtcg
    19561 ccagcgccat ttcataatag ggtgcaacag caaaagcgcc cggtaacggc tggttgttat
    19621 ttaacaaatc gtgcattcgc gggatcagca cccactgcaa ccactccagt ggttccatgg
    19681 tgtccataaa gaacggttgg gtactattaa attgatgcgg ctggggttca tcgtttcgcc
    19741 agtgctgatg ttcacgcagt aacgcttcaa gcgcctgcaa ctggagacga acgcggtcat
    19801 gagtggtcat aaagcaacct caataagaaa aactgccgcg aaggatagca ggaataaaaa
    19861 aagggagcac tgtattcaca gcgctcccgg ttcgtttcgc agcattccag ctacttttgt
    19921 tgctccctgc tcatccttga caacttttcc tctggccttg cggccaatcg ttcatcctga
    19981 actattgctt cctgctcaca ccaccccgat gtgatacttc atcctgaagt gtccttggcc
    20041 ttcctgacca gccgaatcat cctgaccggt tctcattctc catactggag gtgtccttta
    20101 acgcgtcctg cgtcatcctc ttcgcttcat ccagaagcct ttccctgaaa caccatcttg
    20161 gtgtgtcctg cagaagtgtc atcatcctga tgttcacttc gttgtctgac tccctgtcga
    20221 cgaagataga atcgtctttt tcgcgaagtc ttacaaggcg cttacagaca atgccttaag
    20281 gaaaatttca tatgaaagtt aagaattaac aatcaacatt ttgattttaa atgaaaataa
    20341 cgattcttat ctttttaagt attcgcttat ttcctggcga tctcctacag agtctgtaag
    20401 agatctctca caaccagatg gggtatttgg attacagaag aggcttaagt tgattaagga
    20461 attccgcaag atttgaggct aaatgcgtcc gtttacgtgt tcccagcgtc tctttgcaca
    20521 cttcaccgga gagattacac accgagatga cctctaactc ttcttccagc gtcgcgataa
    20581 atagcgtggg cggcagtttt agccttttct gagtcaccag atgaccaatc agattttcct
    20641 gcacccgacg gaagtcgtct tcactccagg tttgcagcaa tgtcagtttg atatcgccaa
    20701 actgcgcgtg catatccccg gcaaactgag tcgtataaaa ggtatgaatt gtgggttgta
    20761 tcacaatatc aaaagcgcgt tcaaccgcgt ttacattttg ttccccggta aacggctggg
    20821 gttgccagta tacggcatct tcggtagttg aaataatgca cggtgaagga acaccgtaca
    20881 gttcctcact taacggccag cttttatgct cttcatgcca cgcatcgcag tagcgtgcag
    20941 taaaatcttt cagggcttgt gcggtcaaat cgtccactaa tttctctctt cacttaaacc
    21001 agatacactt gtcgtttagt ttatctggtt tatgacggtg aaacatgtct tcttatgcaa
    21061 accatcaggc acttgcgggc ctgactcttg gaaaatcaac cgattaccgg gatacctatg
    21121 acgccagcct cctgcaaggc gttccacgca gcctgaatcg cgacccgctg ggtctgaaag
    21181 cggataacct gccttttcac ggtacggata tctggacgct gtatgaactt tcctggctga
    21241 atgcgaaagg tttgccgcag gtcgctgtcg gtcatgttga acttgattac accagcgtaa
    21301 atctgattga gtcgaagagt tttaagctct atctcaacag ttttaaccag acgcgtttta
    21361 ataactggga tgaggtgcgc cagacgctgg agcgcgactt aagcacttgc gctcagggta
    21421 agattagcgt ggcgttatat cgtcttgatg aactggaagg ccagccgata ggtcatttta
    21481 atggcacttg cattgatgac caggatatca ctatcgataa ctatgaattc actactgact
    21541 atctggagaa tgccacctgt ggtgaaaaag tagtggaaga gacgcttgtc agccacctgc
    21601 tgaaatcaaa ctgcctgatc acccatcaac cagattgggg ttcgatccaa attcagtatc
    21661 gtggacgcca aattgacaga gaaaaactgc tgcgttacct ggtctcattc cgtcatcaca
    21721 acgagttcca cgaacagtgc gtggaacgca tctttaatga cctgttacgc ttctgccagc
    21781 cagaaaaatt gagcgtttac gcacgttata cccgtcgtgg cggtctggac attaacccgt
    21841 ggcgcagtaa tagcgatttt gttccatcga ccacaagact ggttcggcaa taaatttttt
    21901 ctcaattttg cgtgctggat tcacgcagaa ggttgtgaaa ggtcatcagg cagggctatt
    21961 gtaatcaaag ggaatgacga tattcgtccc ataaggagtt tttcttgatt acacatatta
    22021 gcccgcttgg ctccatggat atgttgtcgc agctggaagt ggatatgctt aaacgcaccg
    22081 ccagcagcga cctctatcaa ctgtttcgca actgttcact tgccgtactg aactccggta
    22141 gtttgaccga taacagcaaa gaattgctgt ctcgttttga aaatttcgat attaacgtct
    22201 tgcgccgtga acgcggcgta aagctggaac tgattaatcc cccggaagag gcttttgtcg
    22261 atgggcgaat tattcgcgct ttgcaggcca acttgttcgc ggtcctgcgt gacattctct
    22321 tcgtttacgg gcaaatccat aacaccgttc gttttcccaa cctgaatctc gacaactccg
    22381 tccacatcac taacctggtc ttttccatct tgcgtaacgc tcgcgcgctg catgtgggtg
    22441 aagcgccaaa tatggtggtc tgctggggcg gtcactcaat taacgaaaac gagtatttgt
    22501 atgcccgtcg cgtcggaaac cagctgggcc tgcgtgagct gaatatctgc accggctgtg
    22561 gtccgggagc gatggaagcg ccgatgaaag gtgctgcggt cggacacgcg cagcagcgtt
    22621 acaaagacag tcgttttatt ggtatgacag agccgtcgat tatcgccgct gaaccgccta
    22681 acccgctggt caacgaattg atcatcatgc cagatatcga aaaacgtctg gaagcgtttg
    22741 tccgtatcgc tcacggtatc attatcttcc ctggcggtgt gggtacggca gaagagttgc
    22801 tgtatttgct gggaatttta atgaacccgg ccaacaaaga tcaggtttta ccattgatcc
    22861 tcaccggccc gaaagagagc gccgactact tccgcgtact ggacgagttt gtcgtgcata
    22921 cgctgggtga aaacgcgcgc cgccattacc gcatcatcat tgatgacgcc gctgaagtcg
    22981 ctcgtcagat gaaaaaatcg atgccgctgg tgaaagaaaa tcgccgcgac acaggcgatg
    23041 cctacagctt taactggtca atgcgcattg cgccagattt gcaaatgccg tttgagccgt
    23101 ctcacgagaa tatggctaat ctgaagcttt acccggatca acccgttgaa gtgctagctg
    23161 ccgacctgcg ccgtgtgttc tccggtattg tggcgggtaa cgtaaaagaa gtcggtattc
    23221 gcgccattga agagtttggt ccttacaaaa tcaacggcga taaagagatt atgcgtcgta
    23281 tggacgacct gctacagggt tttgttgccc agcatcgtat gaagttgcca ggctcagcct
    23341 acatcccttg ctacgaaatc tgcacgtaat ctcccctccc ccggtgacgt ttgttgccgg
    23401 gttttctcgt ttttggtcac ttactcatca actcatttca tttattatat gaatgtttct
    23461 taccaccctc acgcgacaaa tatcatcaca gttaatatgt catacaattt atgctgcaac
    23521 gcaaacgttt ccctattttc ataaaccgta ttttatcgct atgaaaaaga aattatcgcc
    23581 atgattaact aaaagtattg attttttcag ttcaacctac atatattgcg cgccccggaa
    23641 gaagtcagat gtcgtttaat gggcaaatat tgcccttaaa ttctctttta cttttgattt
    23701 acagagtaaa gcgttgggat aatctatctt ccaagtagat tattgtattt gagatcaaga
    23761 tcactgatag atacataact tgtgtgtatc tttccgccct caaattatta cggcggtaaa
    23821 tgattaagcc atcgccgata gacagatttc atttttacgg tcaggcacct tcccgggctg
    23881 aactggctaa aagctgaatt atttgcattc ctccaggaga aatagatgga aacgactcaa
    23941 accagcacga ttgcgtcgaa agactctcgt agtgcctggc gcaagacaga caccatgtgg
    24001 atgctgggcc tttacggcac ggcaatcggc gcgggcgtgc tgttcctgcc aatcaacgcc
    24061 ggtgttggcg gtatgatccc gctgatcatc atggctatcc ttgcgttccc gatgacgttt
    24121 tttgctcacc gcggcctgac tcgcttcgta ctgtctggta aaaacccggg cgaagacatc
    24181 accgaggttg tagaagaaca ctttggtatt ggcgcaggta aactgattac cctgctctac
    24241 ttcttcgcta tctacccgat cctgctggtt tatagcgtgg caatcaccaa tacagttgaa
    24301 agcttcatgt ctcaccagct gggtatgacg ccaccgccgc gtgcgattct gtcgctgatc
    24361 ctgatcgtgg gtatgatgac catcgttcgc ttcggtgagc agatgatcgt taaagcgatg
    24421 agtattctgg tgttcccgtt tgttggcgta ttgatgctgc tggctctgta cctgatcccg
    24481 cagtggaacg gcgcagcact ggaaacgctg tctctggaca ctgcatctgc aaccggaaac
    24541 ggtctgtgga tgaccctgtg gctggcaatt ccggtaatgg tgttctcgtt caaccactct
    24601 ccgatcatct cttctttcgc cgttgcgaag cgtgaagagt acggcgatat ggcagaacag
    24661 aaatgctcga agatcctggc attcgcacac atcatgatgg tgctgaccgt aatgttcttc
    24721 gtcttcagct gtgtactgag cctgactccg gcagacctgg ctgcggctaa agagcagaac
    24781 atctcgattc tgtcttacct ggctaaccac tttaacgtac cggttatcgc gtggatggct
    24841 ccgattatcg cgattatcgc tatcaccaaa tccttcctcg gccactacct gggcgcacgt
    24901 gaaggcttca acggtatggt gattaaatct ctgcgtggta aaggtaagtc tatcgaaatc
    24961 aacaagctga accgtatcac tgcgctgttc atgctggtaa cgacctggat tgttgccacc
    25021 ctgaacccga gcatcctggg tatgattgaa accctgggcg gtccaatcat cgcgatgatc
    25081 ctgttcctga tgccgatgta cgcaattcag aaagtaccgg caatgcgtaa gtacagcggt
    25141 cacatcagca acgtattcgt tgtcgtgatg ggtctgattg caatctccgc aatcttctac
    25201 tctctgttca gctaagtcct ttcgcgccac tttcgggcgg cgcttcctcc gttttaacgc
    25261 gatgtatttc ctatgattag cgtattcgat attttcaaaa tcggcattgg cccttccagt
    25321 tctcataccg ttggaccaat gaaagcgggt aaacaattta ccgacgatct gattgcccgt
    25381 aacctgctta aagacgtgac ccgcgtggtg gttgacgtgt acggctcgct ctctctgacc
    25441 ggtaaaggcc accacactga tatcgccatt attatgggcc tggcgggtaa cctgccggat
    25501 accgtggata tcgattccat ccctggtttt attcaggatg tgaatactca tggtcgcctg
    25561 atgctggcaa acggtcagca tgaagtggag ttcccggttg atcagtgcat gaacttccac
    25621 gccgacaacc tttctctgca tgaaaacggt atgcgcatta ccgcgctggc aggcgataaa
    25681 gtcgtttaca gccagactta ctactctatt ggcggtggct ttatcgttga tgaagagcat
    25741 tttggccagc aggatagcgc accggttgaa gttccttatc cgtacagttc agcagccgat
    25801 ctgcaaaaac attgtcagga aaccgggctg tcactctctg gcctgatgat gaaaaacgag
    25861 ctagcgctgc acagcaaaga agagctggaa cagcacctgg cgaacgtatg ggaagtcatg
    25921 cgtggcggta ttgagcgcgg tatttccacc gaaggcgtgt tgcctggcaa actgcgcgtt
    25981 ccacgccgtg ctgcggcact acgccggatg ctggtcagcc aggataaaac caccactgac
    26041 ccgatggcgg ttgttgactg gatcaacatg tttgcactgg cagtgaacga agagaacgct
    26101 gctggcggac gcgtggtgac tgcgccgact aacggtgcgt gcgggattat cccggcagtg
    26161 ctggcgtact acgacaagtt tatccgcgaa gtgaacgcta actcactggc tcgttacctg
    26221 ctggtagcca gtgccattgg ttctctttat aagatgaacg cgtcaatttc tggtgctgaa
    26281 gtcggctgcc agggtgaagt tggtgtggcg tgctcaatgg cggcggctgg tctggcagaa
    26341 ctgttaggtg caagcccggc gcaggtgtgc atcgcggcgg aaatcgccat ggagcacaac
    26401 ctcggtctga cgtgtgaccc ggtcgccgga caggtccagg tgccatgcat cgagcgtaac
    26461 gccattgcgg cagtaaaagc ggtgaacgcc gcacgtatgg cgctacgccg taccagcgag
    26521 ccgcgcgtct gcctcgataa agttatcgaa accatgtacg aaacaggtaa agatatgaac
    26581 gccaagtacc gcgaaacctc tcgcggcggc ctggcaatga agatcgttgc ctgcgattaa
    26641 tcgctctcca gaggcctcgt tttgcgaggc ctcttcccga tttctcatcc agccgtagcc
    26701 tgttccggca tcgaatgtta cccttatcgc ctgatcttta agggggttat cgtggctgtt
    26761 catttgctta ttgtcgatgc actgaatctt attcgtcgca ttcatgccgt tcagggatcg
    26821 ccctgtgtcg aaacctgcca gcatgcgctc gatcagctca ttatgcacag ccagccaacc
    26881 cacgcggtcg ccgtttttga tgatgaaaac cgcagtagcg gctggcgtca tcagcgttta
    26941 ccagattaca aagcgggtcg accgccaatg ccggaagagt tgcacgacga gatgcctgca
    27001 ttacgcgccg cctttgagca acgcggcgtc ccgtgctggt caaccagcgg caacgaagcc
    27061 gatgacttag ccgccacgct ggcggtcaaa gtgacacagg ccgggcatca ggcaacgatt
    27121 gtttcgacag ataaaggcta ctgtcagtta ctttcaccga cattacgtat tcgtgattac
    27181 ttccagaaac gttggctgga tgcgccattt atcgataaag aatttggcgt tcaaccgcag
    27241 cagttgcccg attactgggg acttgcgggg atcagcagtt caaaggtacc gggtgttgcg
    27301 ggaatcggac caaaaagcgc cacgcagctg ctggtcgagt ttcagagtct ggaagggata
    27361 tatgagaatc tggatgcggt tgccgaaaag tggcgcaaaa aattagaaac ccataaagag
    27421 atggcgtttc tgtgccgcga tattgcccgc ttacaaaccg atttgcatat cgacggcaat
    27481 ttacagcaat tgcggttggt acggtaacag cgagccggat gcaaacgatt atcaacacat
    27541 tgaatttaat gcacttatat accggataag acgcggctag cgtcgtatcc ggcattatca
    27601 catcagcgca tttaccaggc ggtatggtaa agctctacaa tatcctcaag cgttgcttca
    27661 cgcgggttgc caccggtaca aacatcatcc agtgccgcct gcgccagtgc cggaatgtct
    27721 tccttgcgta caccaacatc acgcaaatgt ggcggaatac cgacatcacg gttgagagca
    27781 aacaccgctt caacagcggc attacgcgcc tcttccagcc actttcacgc ccataacgcg
    27841 cgcgatatcg cggtacttct caccggtaaa gtcagcgtta tagctcatga catgcggtaa
    27901 caggatggcg ttcgcaacac cgtgtggagt gttgtaaaac gcgcccagtg gatgcgccat
    27961 accatgcacc aaccctaacc caacattcga gaagcccata cccgcaacat actgcccgag
    28021 cgccatttct tctccggcat ccttatcacc agcaaccgat cctcgcagcg ccccagcaat
    28081 gatttcaatc gctttaatgt gcagtgcatc ggttagcgcc cacgcgccac gggtaatata
    28141 cccctcaata gcatgagtga gcgcatcgac acccgtcgca gctttcagcg ctggaggcat
    28201 accatccatc atgtcagcgt caataaacgc cacctgcggg atatcatgcg gatcaacgca
    28261 aacaaacttg cgccgtttct cttcgtcagt gatcacgtag ttaatggtca cttctgccgc
    28321 agtacctgct gtggtaggaa ttgccagaat cggtacactg ggtttattgg tcggggaaag
    28381 cccttccagg ctacgcacat cggcaaactc cgggttgttg ctgataatgc caatcgcttt
    28441 acaagtatcc tgtggagaac caccaccaat agcgatcagg taatccgcgc cgctattctg
    28501 gaatacaccg agcccttctt tgacgacagt aattgttggg ttgggcacta cgccgtcgta
    28561 aatcgcccat gccagccctg cagcatccat cttatcggtc actttcgcca ccacgccgca
    28621 ttgcaccagc gttttatcgg tgacgatcag cgccttctga taaccacggc gtttcacctc
    28681 atcggttaaa gccccaacag caccccgacc aaaccatgcc gtttcgttca gaatcattct
    28741 gttagccatc atccttctcc ttgttgcttt acgaaattac tcttcaatcc gtaacccata
    28801 ggttttgaat ttctccagca ctacggcaat ctcttcatcg ctcagcactg gcaccgggtc
    28861 cgtaatcgcc agggtcgtca ggtaaagttg cgccagcact tcaacttcat gcgccagcca
    28921 taacgctttt tccagattca cctcacaagc gataagccca tgatgttgta acaaagttgc
    28981 cttacgattt ttgagagcca gcgcaacatg ttcagaaagt tcgcgtgttc caaaggtcgc
    29041 ataaggcgcg caaggaatag aattaccacc tgccgccgca atcatgtagt gaatagcggg
    29101 gatcggtcgg ttaagaatgg aaactgctgt gcaatgaacg gcatgattgt gaacaaccgc
    29161 gttggcatcc ggtctgcttt gataggccgc catatggaaa cgccattcgc ttgagggg
//
LOCUS       DADMHM010000033        29210 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.034, whole genome shotgun sequence.
ACCESSION   DADMHM010000033 DADMHM010000000
VERSION     DADMHM010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 29210)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29210)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29210
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.034"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            235..678
                     /locus_tag="JN125_001242"
     CDS             235..678
                     /locus_tag="JN125_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004997737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HAY8871082.1"
                     /translation="MDLALVTGQREGDLAAMRWEDIRDGRLYVEQQKTGAKIRISLPT
                     TISRLNLTLTDVLDNLKKINGKNEKLLGGKTARTIAAQFRIARDTSGLKWEGDPPPFH
                     EIRSLSGRLHSAEKGSDFTQALLGHRSSSMTDKYRDGRGREWKDI"
     gene            914..1732
                     /locus_tag="JN125_001243"
     CDS             914..1732
                     /locus_tag="JN125_001243"
                     /EC_number="3.1.3.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphatase"
                     /protein_id="HAY8871083.1"
                     /translation="MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIITG
                     RHHVAIHPFYQALALDTPAICCNGTYLYDYHAKTVLEADPMPVNKALQLIEMLNEHHI
                     HGLMYVDDAMVYEHPTGHVIRTSNWAQTLPPEQRPTFTQVASLAETAQQVNAVWKFAL
                     THDDMPQLQHFGKHVEHELGLECEWSWHDQVDIARGGNSKGKRLTKWVEAQGWSMENV
                     VAFGDNFNDISMLEAAGTGVAMGNADDAVKARANIVIGDNTTDSIAQFIYSHLI"
     gene            complement(1733..2791)
                     /gene="modC"
                     /locus_tag="JN125_001244"
     CDS             complement(1733..2791)
                     /gene="modC"
                     /locus_tag="JN125_001244"
                     /EC_number="7.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum ABC transporter ATP-binding protein
                     ModC"
                     /protein_id="HAY8871084.1"
                     /translation="MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAI
                     SGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMA
                     KSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLD
                     IPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWG
                     SSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLDEPLQAALRIRIQ
                     ASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELA
                     IKPGLWLYAQIKSVSITA"
     gene            complement(2794..3483)
                     /gene="modB"
                     /locus_tag="JN125_001245"
     CDS             complement(2794..3483)
                     /gene="modB"
                     /locus_tag="JN125_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HAY8871085.1"
                     /translation="MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGK
                     ALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVM
                     SFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARS
                     LGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEW
                     LARISRERAGR"
     gene            complement(3483..4256)
                     /gene="modA"
                     /locus_tag="JN125_001246"
     CDS             complement(3483..4256)
                     /gene="modA"
                     /locus_tag="JN125_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY8871086.1"
                     /translation="MARKWLNLFAGAALSFAVAGNTLADEGKITVFAAASLTNAMQDI
                     ATQYKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTASRQ
                     TLLGNSLVVVAPKASEQKDFIIDSTTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKL
                     GAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVVSKGVKVVATFPEDSHKKV
                     EYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTTK"
     gene            complement(4422..4571)
                     /locus_tag="JN125_001247"
     CDS             complement(4422..4571)
                     /locus_tag="JN125_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux pump-associated protein, AcrZ
                     family"
                     /protein_id="HAY8871087.1"
                     /translation="MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGVGKKDQ
                     PGQNH"
     gene            4700..5488
                     /gene="modE"
                     /locus_tag="JN125_001248"
     CDS             4700..5488
                     /gene="modE"
                     /locus_tag="JN125_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-dependent transcriptional regulator"
                     /protein_id="HAY8871088.1"
                     /translation="MQAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGIS
                     YKSAWDAINEMNQLSEHILVERATGGKGGGGAVLTRYGQRLIQLYDLLAQIQQKAFDV
                     LSDDDALPLNSLLAAISRFSLQTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKV
                     AITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNANNQLPGIISHIERGAEQCE
                     VLMALPDGQTLCATVPVNEATSLQQGQNVTAYFNADSVIIATLC"
     gene            5556..7028
                     /gene="modF"
                     /locus_tag="JN125_001249"
     CDS             5556..7028
                     /gene="modF"
                     /locus_tag="JN125_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter ATP-binding protein
                     ModF"
                     /protein_id="HAY8871089.1"
                     /translation="MSSLHILQGTFRLSDTKTLQLPQLTLNAGDSWAFVGSNGSGKSA
                     LARALAGELPLLKGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLGPGEDDTGRTT
                     AEIIQDEVKDAPRCMQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILD
                     EPFDGLDVASRQQLAERLASLHQSGITLVLVLNRFDEIPEFVQFAGVLADCTLAETGA
                     KEELLQQALVAQLAHSEQLEGVQLPEPDEPSARHALPANEPRIVLNNGVVSYNDRPIL
                     NNLSWQVNPGEHWQIVGPNGAGKSTLLSLVTGDHPQGYSNDLTLFGRRRGSGETIWDI
                     KKHIGYVSSSLHLDYRVSTTVRNVILSGYFDSIGIYQAVSDRQQKLVQQWLDILGIDK
                     RTADAPFHSLSWGQQHLALIVRALVKHPTLLILDEPLQGLDPLNRQLIRRFVDVLISE
                     GETQLLFVSHHAEDAPACITHRLEFVPDGGLYRYVLTKIY"
     gene            7289..8305
                     /gene="galE"
                     /locus_tag="JN125_001250"
     CDS             7289..8305
                     /gene="galE"
                     /locus_tag="JN125_001250"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308814.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HAY8871090.1"
                     /translation="MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVI
                     ERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVN
                     GTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL
                     TDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIF
                     GNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGIGSSVLDVVNAF
                     SKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQ
                     GYPD"
     gene            8315..9361
                     /gene="galT"
                     /locus_tag="JN125_001251"
     CDS             8315..9361
                     /gene="galT"
                     /locus_tag="JN125_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-phosphate uridylyltransferase"
                     /protein_id="HAY8871091.1"
                     /translation="MTQFNPVDHPHRRYNPLTGQWILVSPHRAKRPWQGAQETPAKQV
                     LPAHDPDCFLCAGNVRVTGDKNHDYTGTYVFTNDFAALMSDTPDAPESNDPLMRCQSA
                     RGTSRVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGKTYPWVQVFENKGAAMGC
                     SNPHPHGQIWANSFLPNEAEREDRLQKEYFAEQKSPMLVDYVQRELADGSRTVVETEH
                     WLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPY
                     SMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQRDLTAEQAAER
                     LRAVSDIHFRESGV"
     gene            9365..10513
                     /gene="galK"
                     /locus_tag="JN125_001252"
     CDS             9365..10513
                     /gene="galK"
                     /locus_tag="JN125_001252"
                     /EC_number="2.7.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001713229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactokinase"
                     /protein_id="HAY8871092.1"
                     /translation="MSLKEKTQSLFANAFGYPATHTIQAPGRVNLIGEHTDYNDGFVL
                     PCAIDYQTVISCAPRDDRKVRVMAADYENQLDEFSLNAPIVAHENYQWANYVRGVVKH
                     LQLRNNSFGGVDMVISGNVPQGAGLSSSASLEVAVGTVLQQLYHLPLDGAQIALNGQE
                     AENQFVGCNCGIMDQLISALGKKDHSLLIDCRSLGTKAVSMPKGVAVVIINSNFKRTL
                     VGSEYNTRREQCETGARFFQQPALRDVTIEEFNAVAHELDPIVAKRVRHILTENARTV
                     EAASALEQGDLKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGDKGGVRMTGG
                     GFGGCIVALIPEELVPAVQQAVAEQYEAKIGIKETFYVCKPSQGAGQC"
     gene            10507..11547
                     /gene="galM"
                     /locus_tag="JN125_001253"
     CDS             10507..11547
                     /gene="galM"
                     /locus_tag="JN125_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-epimerase"
                     /protein_id="HAY8871093.1"
                     /translation="MLNETPALAPDGQPYRLLTLRNNAGMVVTLMDWGATLLSARIPL
                     SDGSVREALLGCASPECYQDQAAFLGASIGRYANRIANSRYTFDGETVTLSPSQGVNQ
                     LHGGPEGFDKRRWQIVNQNDRQVLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITY
                     RATVDKPCPVNMTNHVYFNLDGEQSDVRNHKLQILADEYLPVDEGGIPHDGLKSVAGT
                     SFDFRSAKIIASEFLADDDQRKVKGYDHAFLLQAKGDGKKVAAHVWSADEKLQLKVYT
                     TAPALQFYSGNFLGGTPSRGTEPYADWQGLALESEFLPDSPNHPEWPQPDCFLRPGEE
                     YSSLTEYQFIAE"
     gene            11749..12501
                     /gene="gpmA"
                     /locus_tag="JN125_001254"
     CDS             11749..12501
                     /gene="gpmA"
                     /locus_tag="JN125_001254"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000301556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HAY8871094.1"
                     /translation="MAVTKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKL
                     LKEEGYSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAE
                     TAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDR
                     VIPYWNETILPRMKSGERVIIAAHGNSLRALVKYLDNMSEEEILELNIPTGVPLVYEF
                     DENFKPLKRYYLGNADEIAAKAAAVANQGKAK"
     gene            complement(12659..13711)
                     /gene="aroG"
                     /locus_tag="JN125_001255"
     CDS             complement(12659..13711)
                     /gene="aroG"
                     /locus_tag="JN125_001255"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001109196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroG"
                     /protein_id="HAY8871095.1"
                     /translation="MNYQNDDLRIKEIKELLPPVALLEKFPATENAANTVAHARKAIH
                     KILKGNDDRLLVVIGPCSIHDPVAAKEYATRLLALREELKDELEIVMRVYFEKPRTTV
                     GWKGLINDPHMDNSFQINDGLRIARKLLLDINDSGLPAAGEFLDMITPQYLADLMSWG
                     AIGARTTESQVHRELASGLSCPVGFKNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHS
                     AIVNTSGNGDCHIILRGGKEPNYSAKHVAEVKEGLNKAGLPAQVMIDFSHANSSKQFK
                     KQMDVCADVCQQIAGGEKAIIGVMVESHLVEGNQSLESGEPLAYGKSITDACIGWEDT
                     DALLRQLANAVKARRG"
     gene            14027..14407
                     /locus_tag="JN125_001256"
     CDS             14027..14407
                     /locus_tag="JN125_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871096.1"
                     /translation="MKMTKLATLFLTATLSLASGAALAADSGAQTNNGQANAATDAGQ
                     VAPDARENVAPNNVDNNGVNTGSGGTMLHSDGSSMNNDGMTKDEEHKNTMCKDGRCPD
                     INKKVQTGDGINNDVDTKTDGTTQ"
     gene            14521..15462
                     /gene="zitB"
                     /locus_tag="JN125_001257"
     CDS             14521..15462
                     /gene="zitB"
                     /locus_tag="JN125_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family zinc transporter ZitB"
                     /protein_id="HAY8871097.1"
                     /translation="MAHSHSHTSSHLPEDNNARRLLYAFGVTAGFMLVEVVGGFLSGS
                     LALLADAGHMLTDTAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIALVVIT
                     ILIVWEAIERFRTPRPVEGGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHV
                     LGDLLGSVGAIIAALIIIWTGWTPADPILSIVVSLLVLRSAWRLLKDSVNELLEGAPV
                     SLDIAELKRRMCREIPEVRNVHHVHVWMVGEKPVMTLHVQVIPPHDHDALLDQIQHYL
                     MAHYQIEHATIQMEYQPCHGPDCHLNEGVSGHSHHHH"
     gene            complement(15459..16178)
                     /locus_tag="JN125_001258"
     CDS             complement(15459..16178)
                     /locus_tag="JN125_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide riboside transporter PnuC"
                     /protein_id="HAY8871098.1"
                     /translation="MDFFSVQNILVHIPIGAGGYDLSWIEAVGTIAGLLCIGLASLEK
                     ISNYFFGLINVTLFGIIFFQIQLYASLLLQVFFFAANIYGWYAWSRQTSQNEAELKIR
                     WLPLPKALSWLAVCVVSIGLMTVFINPVFAFLTRVAVMIMQALGLQVVMPELQPDAFP
                     FWDSCMMVLSIVAMLLMTRKYVENWLLWVIINVISVVIFALQGVYAMSLEYIILTFIA
                     LNGSRMWINSARERGSCALSH"
     gene            complement(16216..17259)
                     /gene="nadA"
                     /locus_tag="JN125_001259"
     CDS             complement(16216..17259)
                     /gene="nadA"
                     /locus_tag="JN125_001259"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HAY8871099.1"
                     /translation="MSVMFDPDTAIYPFPPKPTPLSIDEKAYYREKIKRLLKERNAVM
                     VAHYYTDPEIQQLAEETGGCISDSLEMARFGAKHPASTLLVAGVRFMGETAKILSPEK
                     TILMPTLQAECSLDLGCPVEEFNAFCDAHPDRTVVVYANTSAAVKVRADWVVTSSIAV
                     ELIDHLDSLGEKIIWAPDKHLGRYVQKQTGGDILCWQGACIVHDEFKTQALTCLQEEY
                     PDAAILVHPESPQAIVDMADAVGSTSQLIAAAKTLPHQRLIVATDRGIFYKMQQAVPD
                     KELLEAPTAGEGATCRSCAHCPWMAMNGLQAIAEALEQEGSNHEVHVDERLRERALVP
                     LNRMLDFAATLRG"
     gene            complement(17508..17583)
                     /locus_tag="JN125_001260"
     tRNA            complement(17508..17583)
                     /locus_tag="JN125_001260"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17548..17550),aa:Lys,seq:ttt)
     gene            complement(17730..17805)
                     /locus_tag="JN125_001261"
     tRNA            complement(17730..17805)
                     /locus_tag="JN125_001261"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17770..17772),aa:Lys,seq:ttt)
     gene            complement(17809..17884)
                     /locus_tag="JN125_001262"
     tRNA            complement(17809..17884)
                     /locus_tag="JN125_001262"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(17849..17851),aa:Val,seq:tac)
     gene            complement(18034..18109)
                     /locus_tag="JN125_001263"
     tRNA            complement(18034..18109)
                     /locus_tag="JN125_001263"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18074..18076),aa:Lys,seq:ttt)
     gene            complement(18112..18187)
                     /locus_tag="JN125_001264"
     tRNA            complement(18112..18187)
                     /locus_tag="JN125_001264"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18152..18154),aa:Val,seq:tac)
     gene            complement(18223..18298)
                     /locus_tag="JN125_001265"
     tRNA            complement(18223..18298)
                     /locus_tag="JN125_001265"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(18263..18265),aa:Lys,seq:ttt)
     gene            complement(18463..19254)
                     /gene="cpoB"
                     /locus_tag="JN125_001266"
     CDS             complement(18463..19254)
                     /gene="cpoB"
                     /locus_tag="JN125_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein CpoB"
                     /protein_id="HAY8871100.1"
                     /translation="MSSNFRHQLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQ
                     LERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLS
                     SGGAAAQSTSSDQSGAAASTTPTADAGTANAGAPVKSGDANTDYNAAIALVQDKSRQD
                     DAMVAFQNFIKNYADSTYLPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD
                     AMFKVGVIMQDKGDTAKAKAVYQQVISKYPGTDGAKQAQKRLNAM"
     gene            complement(19264..19785)
                     /gene="pal"
                     /locus_tag="JN125_001267"
     CDS             complement(19264..19785)
                     /gene="pal"
                     /locus_tag="JN125_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HAY8871101.1"
                     /translation="MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGMLGAGTGMD
                     ANGGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYK
                     VTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDE
                     AAYSKNRRAVLVY"
     gene            complement(19820..21112)
                     /gene="tolB"
                     /locus_tag="JN125_001268"
     CDS             complement(19820..21112)
                     /gene="tolB"
                     /locus_tag="JN125_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001646851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HAY8871102.1"
                     /translation="MKQALRVAFGFLILWASVLHAEVRIVIDSGVDSGRPIGVVPFQW
                     AGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEVQPSAWSALGIDAVVVG
                     QVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK
                     GAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT
                     FESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA
                     SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQN
                     QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYS
                     SSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL"
     gene            complement(21245..22408)
                     /gene="tolA"
                     /locus_tag="JN125_001269"
     CDS             complement(21245..22408)
                     /gene="tolA"
                     /locus_tag="JN125_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein TolA"
                     /protein_id="HAY8871103.1"
                     /translation="MSKATEQNDKLKRAIIISAVLHVILFAALIWSSFDENIEASAGG
                     GGGSSIDAVMVDSGAVVEQYKRMQSQESSAKRSDEQRKMKEQQAAEELREKQAAEQER
                     LKQLEKERLAAQEQKKQAEEAAKQAELKQKQAEEAAAKAAADAKAKAEADAKAAEEAA
                     KKAAADAKKKAEAEAAKAAAQKKAEAAAAALKKKAEAAEAAAAEARKKAATEAAEKAK
                     AEAEKKAAAEKAAADKKAAEKAAAEKAAADKKAAAEKAAAEADDIFGELSSGKNAPKT
                     GGGAKGNNASPAGSGNTKNNGASGADINNYAGQIKSAIESKFYDASSYAGKTCTLRIK
                     LAPDGMLLDIKPEGGDPALCQAALAAAKLAKIPKPPSQAVYEVFKNAPLDFKP"
     gene            complement(22473..22901)
                     /gene="tolR"
                     /locus_tag="JN125_001270"
     CDS             complement(22473..22901)
                     /gene="tolR"
                     /locus_tag="JN125_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015965300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin uptake protein TolR"
                     /protein_id="HAY8871104.1"
                     /translation="MARARGRGRRELKSEINIVPLLDVLLVLLLIFMATAPIITQSVE
                     VDLPDATESQAVSSNDNPPVIVEVSGIGQYTVVVEKDRLERLPPEQVVAEVSSRFKAN
                     PKTVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLMTQPI"
     gene            complement(22905..23597)
                     /gene="tolQ"
                     /locus_tag="JN125_001271"
     CDS             complement(22905..23597)
                     /gene="tolQ"
                     /locus_tag="JN125_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolQ"
                     /protein_id="HAY8871105.1"
                     /translation="MTDMNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNA
                     AAREAEAFEDKFWSGIELSRLYQESQGKRDNLTGSEQIFYSGFKEFVRLHRANSHAPE
                     AVVEGASRAMRISMNRELENLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVK
                     QATLQMVAPGIAEALIATAIGLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILH
                     RQAFTVSESNKG"
     gene            complement(23594..23998)
                     /gene="ybgC"
                     /locus_tag="JN125_001272"
     CDS             complement(23594..23998)
                     /gene="ybgC"
                     /locus_tag="JN125_001272"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HAY8871106.1"
                     /translation="MNTTLFRWLVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHH
                     FSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENT
                     LLNEAEVLVVCVDPLKMKPRALPKSIVAEFKQ"
     gene            complement(24148..24441)
                     /gene="ybgE"
                     /locus_tag="JN125_001273"
     CDS             complement(24148..24441)
                     /gene="ybgE"
                     /locus_tag="JN125_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyd operon protein YbgE"
                     /protein_id="HAY8871107.1"
                     /translation="MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTS
                     ELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLLADIVLIIGLIFFFF"
     gene            complement(24441..24554)
                     /gene="cydX"
                     /locus_tag="JN125_001274"
     CDS             complement(24441..24554)
                     /gene="cydX"
                     /locus_tag="JN125_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bd-I oxidase subunit CydX"
                     /protein_id="HAY8871108.1"
                     /translation="MWYFAWILGTLLACSFGVITALALEHVESGKAGQEDI"
     gene            complement(24569..25708)
                     /gene="cydB"
                     /locus_tag="JN125_001275"
     CDS             complement(24569..25708)
                     /gene="cydB"
                     /locus_tag="JN125_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000568269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HAY8871109.1"
                     /translation="MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDT
                     ERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPV
                     GFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGN
                     FFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALA
                     GVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLP
                     LLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQ
                     LTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY"
     gene            complement(25724..27292)
                     /gene="cydA"
                     /locus_tag="JN125_001276"
     CDS             complement(25724..27292)
                     /gene="cydA"
                     /locus_tag="JN125_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HAY8871110.1"
                     /translation="MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSG
                     KQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLM
                     AFFLESTFVGLFFFGWDRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFN
                     FETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKR
                     SFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPD
                     QEEETNKFAIQIPYALGIIATRSVDTPVIGLKELMVQHEERIRNGMKAYSLLEQLRSG
                     STDQAVRDQFNSMKKDLGYGLLLKRYTPNVADATEAQIQQATKDSIPRVAPLYFAFRI
                     MVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQP
                     WAIGEVLPTAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPSSLKTGR
                     YHFEQSSTTTQPAR"
     gene            complement(28140..>29210)
                     /locus_tag="JN125_001277"
     CDS             complement(28140..>29210)
                     /locus_tag="JN125_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HAY8871111.1"
                     /translation="IEESSDDGDEYDYSPAKEEWVITAANAKPQCDIIHEVWQSRAVI
                     RYDMAVPLNLSERSARQSTGRVGVVLVVTLSHNSRRIDVDINLDNQADDHRLRVLVPT
                     PFNTDSVLADTQFGSLTRPVNDSAMNNWQQEGWKEAPVPVWNMLNYVALQEGRNGMAV
                     FSEGLREFEVIGEEKKTFAITLLRGVGLLGKEDLLLRPGRPSGIKMPVPDSQLRGLLS
                     CRLSLLSYTGTPTAAGVAQQARAWLTPVQCYNKIPWDAMKLNKAGFNVPESYSLLKMP
                     PVGCLISALKKAEDRQEVILRLFNPAESATCDATVAFSREVISCSETMMDEHITTEEN
                     QGSNLSGPFLPGQSRTFSYRLA"
BASE COUNT         7379 a         7679 c         7115 g         7037 t
ORIGIN      
        1 ccccaaacga atcggaaaat cgatactgga aaaactctaa ctcggtggcc agtttttgtt
       61 gaccacttca cagacatttt taaaacagct atagcttctg gtcttgccga agaagatcca
      121 gcttctgcaa ccaggccatt cagaactgaa gtgaagcgca gtcgactgtt aattgacgag
      181 tatctgttaa tcaggaaaat agcagacgtc cagaacgaat ggttcggcct ttgcatggat
      241 cttgcactgg taacaggaca gcgcgaagga gatctggcgg ctatgagatg ggaggatata
      301 agagatggca ggctatacgt ggaacaacaa aaaacagggg caaaaattcg catttctctc
      361 cccaccacga tttccagatt gaatttaaca cttaccgatg tactggataa cttgaaaaaa
      421 ataaacggta aaaacgaaaa gttactcgga gggaagacag ccaggacaat cgcagcacag
      481 ttcaggattg cccgagacac atccggattg aaatgggaag gtgacccacc gccatttcat
      541 gaaatccgaa gtttatccgg tcgcctgcac tcagcagaaa aaggcagtga tttcactcag
      601 gcgctccttg gacatcgttc atccagcatg acggataaat accgtgacgg acgagggagg
      661 gaatggaaag acatttagaa ttaatttcga acgatttcga aacaccactt gtaattaatt
      721 gattataaag gattaattcc taagaggcat ttgcttcatg aatgctcctt tgcatttagc
      781 aactgactgt aacagctaaa attagtcgct tttggcggtg aatgctgaat taaaacgcag
      841 aattttgtcc gatagtggta tcggtgtacc attcgcgcag acgaaaattc ttaaccttaa
      901 tctggaatac gccatgacca cacgcgtgat tgctctcgac ttagacggca ccttattgac
      961 cccgaaaaag accctgcttc cttcatcgat agaagccctg gcccgcgctc gcgaagcagg
     1021 ctatcaatta atcatcatca caggtcgcca tcacgtcgct attcatcctt tttatcaggc
     1081 gctggcgctg gatacacctg ctatttgctg taatggcacc tatttgtatg attatcatgc
     1141 aaaaaccgtg ctggaagcgg acccaatgcc cgttaataaa gccctgcaac tcattgagat
     1201 gctgaatgaa caccacattc acggtctgat gtatgtggat gatgcaatgg tctatgagca
     1261 cccgaccggg catgtcattc gcacgtctaa ctgggcgcaa accctgccgc cggaacagcg
     1321 tccgactttc acacaagtcg cttctctggc tgaaacggcg caacaagtta acgccgtatg
     1381 gaagttcgcc ctgacgcacg atgacatgcc gcaattgcag cattttggta agcatgtcga
     1441 acatgaactg ggactggagt gtgaatggtc ctggcacgat caggttgata ttgcacgcgg
     1501 cggcaacagc aaaggtaaac gtttgacgaa atgggttgag gcgcaaggct ggtcgatgga
     1561 aaacgtcgtg gcgttcggcg ataactttaa tgatatcagt atgctggagg ccgctggtac
     1621 aggcgtggcg atgggcaacg ccgatgacgc ggtaaaagcg cgcgccaaca ttgtgattgg
     1681 tgataacacc accgacagca ttgcccagtt catttatagc cacctgattt aatcaggcgg
     1741 ttatcgacac acttttaatt tgcgcgtaca gccacaggcc tggtttgatc gccagttcat
     1801 ccctggccca cgggctgata cgcgcccaca gcgttttacc gccgacttcc agctccactt
     1861 ccacctgacc gttgtcgtca taactattaa caacttttgc ccgcaatacg ttacgaatgc
     1921 tggtttgctg cggcggttgt aaaaccagag aaacatcgga agcctgaatg cggatacgta
     1981 gcgcagcttg cagcggttcg tccagcttat tgacccacaa atgctgatcg cccagcgcca
     2041 gcgcggtcat cgcgtaatgc ggatgatgct caagcaccgt cactttcaga atgctacttt
     2101 gttgctcttt cggcagccac ggattcatca cgctactacc ccagacttct tccagtgcgc
     2161 caaaggcttt cacctgaccg ttttccagta ccatcactct gtctgccaga tggaggatct
     2221 catccagcga atggctgaca tacaacatcg ggatgttgat ttcccgcgtc agacgttgca
     2281 gataaggcaa cagttcgcgt ttacgcggaa tatccagtga cgccagcggt tcatccagca
     2341 acagcaattc tggtgccgtc agcaaagccc gcccaatcgc tacgcgctgt ttttcgcctc
     2401 cggacaggct gcctggtaaa cggtcaagca acggttcaat gcctaaaagc gccaccagct
     2461 tatcgaactg atcgaccatg cttttcgcca tgccgtagcg cagattgcca cgcactttgt
     2521 aatgcggaaa cagccgcgca tcctgaaaaa catagccaac gcgacgcttt tctggcgtca
     2581 ggcagatacc tttttcggca tcatttagta cccgaccatt gaggacaatc ctcccttttt
     2641 gcgggcgcgt cagtccactg atggcgttaa tcagcgaagt ttttccggca ccggagacgc
     2701 caaaaatagc agtgatgcca ttggcgggca gcgtttcatt aatagtcagg caatggttgc
     2761 ccaacgtctg ggaaaaattc agttccagca tgattagcgc cccgcccgtt cacggctgat
     2821 tctggccagc cattctgaaa tcaacaggga gatcatcgcc agcgcaatag aaataatgca
     2881 cagtctcgcc gcgccacttt ccccgccggg ggtctggatc agggtataca tggcagaggg
     2941 aatggttcgc gtttcgccag gaatgttcga cacaaaggtg atggttgcac caaactcacc
     3001 gagagaacga gcaaaagcca gtaccgtacc aacaataatt cccggtaagg tcagcggtaa
     3061 cgtgatagta aagaaaacgc gccagcgccc ggcacctagt gttcttgcgg cctgttcgag
     3121 tttgacatca accccttcca gcgccagacg aattgcccgc accatcagcg gaaacgacat
     3181 gacggcggca gcgagaaccg cgccgcgcca gctaaaggcg aaggtaatac caaaccagtc
     3241 atacagacgt tcaccgataa atccgcgccg tcccatcgaa actaataata agtaaccgac
     3301 gaccacgggc ggtaacacca gcggtagatg cagtacgctg tcgagcagag ctttgcccgg
     3361 aaacgtgcaa cgcactagta accaggcaaa aaagatccca aacggcaggc taaacagcac
     3421 agccagggaa gaaactttca ggcttaataa aactgcctgc cattctggat cggtcagtat
     3481 cattacttgg ttgtaaatcc gtaacgttta aagatttccg ctgcctgcgg tcccttcaga
     3541 taatcataaa atgctttcac tgtcgcattg ttatgccctt ccacaacagc aaccggatat
     3601 tccacttttt tatgtgaatc ttccgggaag gtggcaacca cttttacccc tttgctgaca
     3661 actgcgtcag aaccgtaaac aatgcccaac ggcgcttcat tgcgttcgac caacgccagc
     3721 gcgccacgaa catcttccgc cggagccaat ttcggggaga gcgtatccca tgcgcccagt
     3781 ttttgcagtg cttcttttgc ataaatgcca gcagggacat gttccggatc gccaaccgcg
     3841 aggcgaccgc cattcagcag cgaagtccag ttagttgtgc tgtcgatgat gaaatctttc
     3901 tgctcgctgg ctttcggtgc tacaacgacc aggctattgc cgagcagtgt ctgccgcgaa
     3961 gccgtatcga tcgctttttt atcaaccgca taatccatcc atttctgatc ggcagagata
     4021 aacagatccg caggcgctcc cgcttcaatc tgacgggcca gagtagatga cgaagcgaaa
     4081 gaagaaacca catccacgcc tttttctttt ttatactgcg tagcaatgtc ctgcattgcg
     4141 ttagtcagtg atgcggcggc gaacaccgtg attttccctt catctgccag tgtattgcca
     4201 gcaacagcga aagagagtgc cgccccggca aacaagttca accatttacg agccattggt
     4261 aaccccttaa tgtaacgtta tataggtgac aacataacgg ctagctcaga attttcccag
     4321 cagttattgc taacctttgt gaggtagata agaaaaaata tcggctggaa aagcaggaag
     4381 ttgagaaaaa gaaatgcccg actaagtggg cattcaggga atcaatgatt ttgtccgggc
     4441 tggtcttttt taccaacacc agaaaagatg ttgaatactt caccaagacc gtaaatcaga
     4501 cccaggatga tggccatcac gacaggtacc atgattacgg cgaataccag actttttaat
     4561 aactctaaca tggtcaactc cagatatagt catgagacta ttctaaccgc taagcacaga
     4621 aaagcactcc ccttttgtgc ggtcagcttt gcgtggcgtt cgttttccgt cacaataaga
     4681 cttttgccag gacattgtta tgcaggccga aatccttctc acccttaagc tccaacaaaa
     4741 attattcgcc gacccgcgcc ggatttcgct actaaaacac attgcgcttt ccggttccat
     4801 tagccaggga gcgaaagatg ccggtatcag ctataaaagc gcctgggatg ccattaacga
     4861 gatgaatcag ttaagcgagc atattctggt tgagcgcgca acaggcggta aaggtggcgg
     4921 cggcgcagta ctgacccgct atggtcagcg actgattcag ctctatgact tactggcgca
     4981 aatccagcaa aaagcctttg atgtgttaag tgacgatgac gccctgccgc tgaacagcct
     5041 gctggccgcg atctcacgtt tttcactgca aaccagcgcc cgtaaccagt ggttcggtac
     5101 catcaccgcc cgcgatcatg atgacgttca acagcatgtt gatgtcttac tggctgacgg
     5161 aaaaacacgc ctgaaagtcg caattaccgc acaaagcggc gcacgtctgg ggctggatga
     5221 aggcaaagaa gtgttgatat tgctaaaagc gccgtgggta ggcattactc aggacgaagc
     5281 ggtcgcacaa aacgccaaca accaattacc gggtattatt agtcatattg agcgcggcgc
     5341 agagcagtgc gaagtattaa tggcgctacc cgacgggcaa acactgtgcg ccacagtgcc
     5401 ggtaaatgaa gcgacttctc ttcagcaagg gcagaatgtc acggcctact ttaatgccga
     5461 cagcgtgatt atcgccacgc tgtgctaagc gtgttgacaa tttgttatga aacacgtatc
     5521 cctgtcagta atcgctgcac aaaatgggat ataatatgtc atcgttgcat attttgcaag
     5581 gcacgtttcg tcttagcgac acaaaaacgc tgcaattgcc tcagctaacg ttaaacgcgg
     5641 gtgatagttg ggcgtttgtc ggttcgaatg gaagcgggaa atcggccctg gcccgcgcgc
     5701 tggcggggga acttccgctt ttgaaaggtg aacggcaaag ccagttttcc cacatcactc
     5761 gtctctcctt cgagcaattg caaaaactcg tcagcgacga atggcagcgg aataacaccg
     5821 atatgctcgg ccctggcgaa gatgacaccg gacgcactac ggctgagatc attcaggatg
     5881 aagtaaagga tgcaccgcgt tgcatgcaac tggcgcagca gttcggtatt accgccctcc
     5941 tcgaccgacg ctttaaatac ctttccactg gcgagacgcg aaaaaccctg ctgtgtcagg
     6001 cgctgatgtc ggagcctgac ttgttgattc ttgatgagcc gttcgatggc ctggatgttg
     6061 cctcacgtca gcagctggct gagcgactcg cctcgttaca tcagtccggt attactctgg
     6121 tactggtgct caatcgcttc gatgagatcc cggagtttgt ccagtttgct ggcgtgctgg
     6181 cggattgcac gttagcggaa actggcgcta aagaggaact gctccaacaa gcactcgtcg
     6241 cgcaactggc acatagtgaa cagcttgaag gtgtgcaact gccggagccg gatgaacctt
     6301 cagcacgtca cgccttaccc gccaacgaac cgcgcattgt gctgaacaat ggcgtggttt
     6361 cttataacga tcgccccatt cttaataacc ttagctggca ggtgaatcca ggtgaacact
     6421 ggcaaattgt cgggccaaat ggtgcaggaa aatcgacgtt attaagcctg gttactggcg
     6481 atcatccgca aggttacagc aacgatttga cgcttttcgg acgacgtcgc ggcagcggcg
     6541 aaaccatctg ggatatcaaa aagcatatcg gttacgtcag cagtagtttg catctggatt
     6601 accgggtcag cactaccgtg cgtaatgtga ttctttctgg ctattttgat tcgattggca
     6661 tttatcaggc cgtttcggat cgccagcaaa aactggtgca gcagtggctg gatattctcg
     6721 gcattgataa acgtacggct gacgctccgt tccatagtct ttcctgggga cagcagcatc
     6781 tggcgctgat cgtccgcgca ctggtgaaac atccgacgtt gcttattctc gatgaaccac
     6841 tacaggggct tgatccgctc aatcgccagc ttatccgccg ttttgttgat gtgctgatta
     6901 gcgaaggtga aacgcaattg ttgtttgttt cgcaccacgc tgaagatgcg cctgcctgta
     6961 ttacccatcg ccttgagttc gtgccggacg gtggactcta tcgctatgtg ctgacaaaaa
     7021 tatattgagt cggtagtgct gaccttgccg gaggcggcct aagcgccctc tccggccaac
     7081 ggttcgacgc atgcaggcat gaaaccgctt cttttttcag ataaaaagcg caatcattca
     7141 taaaccctct gttttataat cacttaatcg cgcataaaaa acggctaaat tcttgtgtaa
     7201 acgattccac taatttattc catgtcacac ttttcgcatc tttgttatgc tatggttatt
     7261 tcataccata agcctaatgg agcgaattat gagagttctg gttaccggtg gtagcggtta
     7321 cattggaagt catacctgcg tgcaattact gcaaaacggt catgatgtca tcattcttga
     7381 taacctctgt aacagtaagc gcagcgtact gcctgttatc gagcgtttag gcggcaaaca
     7441 tccaacgttt gttgaaggcg atattcgtaa cgaagcgttg atgaccgaga tcctgcacga
     7501 tcacgctatc gacaccgtga tccacttcgc cgggctgaaa gccgttggcg aatcggtaca
     7561 aaaaccgctg gaatattacg acaacaatgt caacggtact ctgcgcctga ttagcgccat
     7621 gcgcgccgct aacgtcaaaa actttatttt tagctcctcc gccaccgttt atggcgatca
     7681 gcccaaaatt ccatacgttg aaagcttccc gaccggcaca ccgcaaagcc cttacggcaa
     7741 aagcaagctg atggtggaac agatcctcac cgatctgcaa aaagcccagc cggactggag
     7801 cattgccctg ctgcgctact tcaacccggt tggcgcgcat ccgtcgggcg atatgggcga
     7861 agatccgcaa ggcattccga ataacctgat gccatacatc gcccaggttg ctgtaggccg
     7921 tcgcgactcg ctggcgattt ttggtaacga ttatccgacc gaagatggta ctggcgtacg
     7981 cgattacatc cacgtaatgg atctggcgga cggtcacgtc gtggcgatgg aaaaactggc
     8041 gaacaagcca ggcgtacaca tctacaacct cggcgctggc ataggcagca gcgtgctgga
     8101 cgtggttaat gccttcagca aagcctgcgg caaaccggtt aactatcatt ttgcaccgcg
     8161 tcgcgagggc gaccttccgg cctactgggc ggacgccagc aaagccgacc gtgaactgaa
     8221 ctggcgcgta acgcgcacac tcgatgaaat ggcgcaggac acctggcact ggcagtcacg
     8281 ccatccacag ggatatcccg attaaggaac gaccatgacg caatttaatc ccgttgatca
     8341 tccacatcgc cgctacaacc cgctcaccgg gcaatggatt ctggtttcac cgcaccgcgc
     8401 taagcgcccc tggcaggggg cgcaggaaac gccagccaaa caggtgttac ctgcgcacga
     8461 tccagattgc ttcctctgcg caggtaatgt gcgggtgaca ggcgataaaa accacgatta
     8521 caccgggact tacgttttca ctaatgactt tgcggccttg atgtctgaca cgccagatgc
     8581 gccagaaagc aacgatcctt tgatgcgttg ccagagcgcg cgcggtacca gccgggtgat
     8641 ctgcttttca ccggatcaca gtaaaacgtt gccagaactg agcgttgcgg cattgacgga
     8701 aatcgtcaaa acctggcagg agcaaaccgc agagctggga aaaacgtacc cgtgggtgca
     8761 ggtctttgaa aacaaaggtg cggcgatggg ctgctctaac ccgcatccgc acggacagat
     8821 ttgggcaaat agcttcctgc ctaacgaagc tgagcgcgaa gaccgcctgc aaaaagaata
     8881 ttttgccgaa cagaaatcac caatgctggt ggattatgtt cagcgcgagc tggcagacgg
     8941 tagccgtacc gttgtcgaaa ccgaacactg gttagccgtt gtgccttact gggctgcctg
     9001 gccgttcgaa acgctactgc tgcccaaagc ccacgttttg cggatcaccg atttgaccga
     9061 cgcccagcgc agcgatttgg cgctggcgtt gaaaaagctg accagtcgtt atgacaacct
     9121 cttccagtgc tccttcccct actctatggg ctggcacggc gcaccattta atggcgaaga
     9181 gaatcaacac tggcagctgc acgcgcactt ttatccgcct ctgctgcgct ccgccaccgt
     9241 acgtaaattt atggttggtt atgaaatgct ggcagagacc cagcgagacc tgaccgcaga
     9301 acaggcagca gagcgtttgc gcgcagtcag cgatatccat tttcgcgaat ccggagtgta
     9361 agaaatgagt ctgaaagaaa aaacacaatc tctgtttgcc aacgcatttg gctaccctgc
     9421 cactcacacc attcaggcgc ctggccgcgt gaatttgatt ggtgaacaca cggactacaa
     9481 cgacggtttc gttctgccct gcgcgattga ttatcaaacc gtgatcagct gtgcaccacg
     9541 cgatgaccgt aaagttcgcg tgatggcagc cgattatgaa aatcagctcg acgagttttc
     9601 cctcaatgcg cccattgtcg cgcatgaaaa ctatcaatgg gcgaactacg ttcgtggcgt
     9661 ggtgaaacat ctgcaactgc gtaacaacag cttcggcggt gtggacatgg tgatcagcgg
     9721 caatgtgccg cagggtgccg ggttaagttc ttccgcttca ctggaagtcg cggtcggaac
     9781 cgtattgcag cagctttatc atctgccgct ggacggcgca caaatcgcgc ttaacggtca
     9841 ggaagcagaa aaccagtttg ttggctgtaa ctgcgggatc atggatcagc taatttccgc
     9901 actcggcaag aaagatcatt ccttgctgat tgactgtcgt tcactgggga ccaaagcagt
     9961 ttccatgccg aaaggtgtgg ctgtcgtcat catcaacagt aacttcaaac gtaccctggt
    10021 tggcagcgaa tacaacaccc gtcgtgaaca gtgcgaaacc ggtgcgcgtt tcttccagca
    10081 gccagccctg cgcgatgtca ccattgaaga gttcaatgct gttgcacatg agctggaccc
    10141 aatcgtggcg aaacgcgtgc ggcatatcct gactgaaaac gcccgcaccg ttgaagctgc
    10201 cagcgcgctg gagcagggcg acctgaaacg tatgggcgag ttgatggcgg agtctcatgc
    10261 ctctatgcgc gatgatttcg aaatcaccgt gccgcaaatt gacactctgg tagaaatcgt
    10321 caaagctgtg attggcgaca aaggtggcgt acgcatgacc ggcggcggat ttggcggctg
    10381 tatcgtcgcg ttgatcccgg aagagctggt gcctgccgta cagcaagctg tcgctgaaca
    10441 atatgaagca aaaataggta ttaaagagac tttttacgtt tgtaaaccat cacaaggagc
    10501 aggacagtgc tgaacgaaac tcccgcactg gcacccgatg gtcagccgta ccgactgtta
    10561 actttgcgta acaacgcagg gatggtagtc acgctgatgg actggggtgc gactttactt
    10621 tcagcccgta ttccgctttc cgatggcagc gtccgcgagg cgctgctcgg ctgtgccagc
    10681 ccggaatgct atcaggatca ggccgcgttt ctgggggcct ctattggtcg ttatgccaac
    10741 cgcatcgcca atagccgtta tacctttgac ggtgaaaccg tgaccctttc gccaagtcag
    10801 ggcgttaacc agctgcacgg cggcccggaa gggttcgaca aacgtcgctg gcagattgtg
    10861 aaccagaacg atcgtcaggt gctgtttgcc ctgagttcag atgatggcga tcagggcttc
    10921 ccgggtaatc tcggcgcaac ggtgcaatat cgtctgaccg acgataaccg tatctccatt
    10981 acttatcgcg ccacagttga taaaccttgc ccggtgaata tgactaatca cgtctatttc
    11041 aatcttgacg gcgagcagtc tgacgtgcgc aatcacaagt tgcagattct ggcggacgaa
    11101 tatctgccgg ttgatgaagg cggcattccg cacgacggcc tgaaatctgt cgccggaacg
    11161 tcttttgatt tccgcagcgc caaaatcatc gccagtgagt ttcttgccga cgacgatcag
    11221 cgcaaagtga aaggttacga tcacgcattc ttgttacagg ccaaaggcga tggcaagaaa
    11281 gtggcggcgc atgtctggtc agcagatgaa aaattgcagc tgaaggtcta caccaccgct
    11341 ccggctctgc aattctactc cggcaacttc ctcggcggca caccgtcgcg gggaacagaa
    11401 ccttacgccg actggcaagg gctggcgttg gaaagcgagt ttctgccgga cagcccgaac
    11461 caccctgaat ggccgcaacc ggactgcttc ctgcgtcctg gcgaagagta ttccagcctg
    11521 acggaatatc agtttattgc tgagtaatgt taagccctcg tcatgagggc tttatctcat
    11581 attgttcaaa tcaccagcaa acaccgacat atttgcaact caatattcac aacaacctta
    11641 cactgcgcca ctattttcgc tatggttatg cgtaagcatt gctgttgctt cgtcgcggca
    11701 atataatgag aattattatc attaaaagat gatttgagga gtaagtatat ggctgtaact
    11761 aagctggttc tggttcgtca tggcgaaagt cagtggaaca aagaaaaccg tttcaccggt
    11821 tggtacgacg tggatctgtc tgagaaaggc gtaagcgaag caaaagcagc aggtaagctg
    11881 ctgaaagagg aaggttacag ctttgacttt gcttacactt ctgtgctgaa acgcgctatc
    11941 cataccctgt ggaatgtgct ggacgaactg gatcaggcat ggctgcccgt tgagaaatcc
    12001 tggaaactga acgaacgtca ctacggtgcg ttgcagggtc tgaacaaagc ggaaactgct
    12061 gaaaagtatg gcgacgagca ggtgaaacag tggcgtcgtg gttttgcagt gactccgccg
    12121 gaactgacta aagatgatga gcgttatccg ggtcacgatc cgcgttacgc gaaactgagc
    12181 gagaaagaac tgccgctgac ggaaagcctg gcgctgacca ttgaccgcgt gatcccttac
    12241 tggaatgaaa ctattctacc gcgtatgaag agcggtgagc gcgtaatcat cgccgcacac
    12301 ggtaactccc tgcgtgcgct ggtgaaatat cttgataaca tgagcgaaga agagattctt
    12361 gagctgaata tcccgactgg cgtgccgctg gtgtatgagt tcgacgagaa tttcaaaccg
    12421 ctgaaacgct attatctggg taatgctgac gagatcgcag cgaaagcagc ggcggttgca
    12481 aaccagggta aagcgaagta aacgtcattc gtttaaaatg agaaagccga ctgcaagtga
    12541 gtcggctttt ttgttgctaa caatggagca cattgcctga tgcgacgctg cgcgacttat
    12601 caggcctgtg gtgattcatc ggatacgcca ctctgacggc gcatccgaca attaaacctt
    12661 acccgcgacg cgcttttact gcattcgcca gttgacgtaa cagagcatcg gtatcttccc
    12721 agccgatgca ggcatcggtg atgctcttac cgtaggccag cggctccccg ctctcgaggc
    12781 tctgattgcc ttccaccaga tggctttcca ccatcacgcc aataatggcc ttttcgccac
    12841 cggcaatctg ctggcaaacg tcagcacaaa catccatctg ctttttgaat tgtttggacg
    12901 agttagcatg gctgaaatcg atcatcacct gtgctggcag gcctgctttg ttcagccctt
    12961 ctttcacttc agcaacgtgc ttcgcgctgt agttaggctc tttaccgccg cgcagaatga
    13021 tatggcaatc gccgttaccg ctggtattca caatcgccga atgcccccat ttcgttacgg
    13081 acaggaagca gtgcggcgca ccggcggcat taatggcatc gatagccact ttaatcgtac
    13141 cgtcggtgcc atttttgaag ccgactggac aagaaagccc tgatgccagt tcgcggtgca
    13201 cctgcgattc ggtggtacgt gcgccaattg cgccccagct catcaggtca gcgagatatt
    13261 gtggggtgat catatcgaga aactcacccg ccgctggcag accgctgtcg ttaatatcaa
    13321 gcagcaattt acgggctata cgaagaccgt cgttgatctg gaagctgtta tccatatgcg
    13381 gatcgttaat cagccctttc cagcccaccg tggtacgcgg cttttcaaaa tagacgcgca
    13441 ttacgatttc cagctcatct ttcagctctt cacgcagcgc cagcaagcga gtggcatact
    13501 ctttagccgc gacaggatca tgaattgagc acgggccaat caccaccaac aggcgatcat
    13561 cattaccttt caggatctta tggatcgctt ttcgggcatg ggcaaccgta ttcgcggcat
    13621 tttcagtagc ggggaatttt tccagcaatg cgacaggagg aagtaactct ttgatttctt
    13681 tgatgcgtaa atcgtcgttc tgataattca tgtctgttcc agtgttgcca tacttatctt
    13741 agtgaatgca atacttccaa tctatatctt ccgtcagaat gtgtaaacgg agttttacat
    13801 tatgaacgga ttaatcctgg aattagcaag aaaaacgcca gattgtcgcg aaaaacgaga
    13861 tctctcctac aatttctaac tgtaactcct ttgtttgtta attatttcaa gattctctgc
    13921 tgcgtttcat aaactggctg aaatcttaaa ccaatgcctt atattcacct gcaaatgcac
    13981 tgttggaaga ggttatccga cataacgacc ataacaggag catcctatga aaatgacaaa
    14041 actggccaca ttatttctga ctgccactct aagccttgcc agcggtgccg cactggctgc
    14101 cgatagcgga gcgcaaacta ataacggcca ggcaaacgcc gcaactgatg cgggccaggt
    14161 tgcccctgac gcccgtgaaa atgtcgcgcc aaataacgtc gacaataacg gggtaaatac
    14221 cggttctggc ggcacaatgc tgcattcgga tggttcttca atgaacaatg acggaatgac
    14281 caaagatgaa gagcacaaga acaccatgtg caaagatggt cgatgtccgg atatcaataa
    14341 aaaggtacaa accggtgatg gcatcaataa tgatgtcgat accaaaaccg acggtaccac
    14401 gcagtaaccc tgcaaaatag ccaataatgg gagagcggag tctctccctt ttaatttttc
    14461 acttctaaaa gcagtatgat gtcataaagt taagtgagaa taattaaggg atgactcgtc
    14521 atggcgcact cacactcaca cacgtcctca cacctgccag aagataataa tgctcgtcgc
    14581 ttgttgtatg ctttcggcgt gactgccggg tttatgctgg tagaagtcgt tggtggtttt
    14641 ctttctggtt ctctggcatt gctggccgat gcgggtcata tgttgaccga tactgccgcc
    14701 ctgcttttcg ccctactcgc cgtgcaattt tcacgtcgtc ctcccaccat tcgccacact
    14761 ttcggttggc taagactgac cacgctcgcg gcgtttgtga atgccatcgc cctcgtggta
    14821 attaccattt tgattgtctg ggaggcgata gaacgcttcc gcacgccgcg tccggtcgag
    14881 ggcggcatga tgatggcaat tgccgtggct gggttgctgg caaatatact ttctttctgg
    14941 ttacttcatc acggcagcga agagaaaaac ctcaacgtac gagcagcggc attgcatgtg
    15001 ctcggggacc tgttgggttc ggttggggct attattgccg cgttgattat tatctggacc
    15061 ggctggacac ctgctgaccc cattctctcg atagtggtgt cgcttctggt tctgcgtagc
    15121 gcgtggcgac tgttgaaaga tagcgtgaat gaattacttg aaggtgcacc ggtatcgctg
    15181 gatatcgctg aactgaagcg tcgtatgtgc cgggaaatcc cggaagtccg caatgtgcac
    15241 catgtacatg tatggatggt aggtgagaag ccggtgatga cgctgcatgt gcaggtgatc
    15301 ccgccacacg atcacgatgc cttgttggat cagatccaac actacctgat ggctcactat
    15361 cagattgagc acgccaccat tcagatggaa tatcaacctt gtcatgggcc agactgccac
    15421 ctgaatgaag gggtgtctgg ccattcacat catcaccatt aatgggacag cgcgcatgag
    15481 cctctttcac gtgcgctgtt gatccacatc cgactgccgt tgagcgcaat aaaggtcagg
    15541 atgatgtact ccagagacat ggcgtaaacg ccctgaagtg caaaaataac gacgctaatc
    15601 acgttaataa tcacccacaa cagccagttt tccacatact tacgcgtcat cagaagcatt
    15661 gccacgatag ataacaccat catgcatgaa tcccagaacg ggaaagcgtc cggttgcagt
    15721 tcaggcatca caacctgtaa tcctaatgct tgcatgatca tgactgccac gcgggtcaaa
    15781 aatgcaaaca ccggattgat aaataccgtc atcagaccaa tcgaaacaac gcaaaccgcc
    15841 aaccagctga gcgccttcgg caatggtaac cagcgaattt tcaactccgc ctcgttctga
    15901 ctggtttgtc gcgaccacgc ataccaaccg taaatattcg cggcaaagaa aaacacctgt
    15961 aatagcaggc tggcatacag ctgaatctga aagaaaataa tgccaaacaa ggtgacgttg
    16021 atcaggccaa agaagtagtt gctgatcttc tccagactgg caaggccaat acacagcaac
    16081 ccggcgatcg tgcctaccgc ttcgatccat gagagatcat aaccgcctgc tcctattggt
    16141 atatgtacca ggatattctg cacactaaaa aaatccatct ttcccccaaa gcgtaacgtt
    16201 acgccttatt attcgttatc cacgtagtgt agccgcaaaa tccagcatac gattgagcgg
    16261 caccagcgcc ctctctcgca gcctttcatc aacatgaacc tcgtgattgc ttccttcctg
    16321 ttctaatgcc tctgcgatgg cctgaaggcc attcatggcc atccacggac aatgcgcgca
    16381 gctgcggcag gttgcaccct cacctgcggt tggtgcttcc agtaactctt tatctggcac
    16441 cgcctgctgc attttgtaga aaataccccg atcggttgcc acaataagcc tctgatgtgg
    16501 caatgttttc gcagcagcga tcagttgact ggtggaaccg accgcatccg ccatatcgac
    16561 aatagcttgt ggtgattctg gatgcaccag tatggcagca tccgggtatt cttcttgcaa
    16621 gcaggttaac gcctgagtct taaattcatc atgcacaata caggcaccct gccagcatag
    16681 aatgtctcca cccgtctgtt tttgcacgta acgccccaga tgtttgtcgg gtgcccagat
    16741 gattttttca cccaaactat caagatgatc aataagttcg acggcaatgc ttgaagttac
    16801 cacccaatct gcgcgcactt ttaccgcagc agaagtgttg gcgtagacga cgacagtacg
    16861 atcgggatgg gcatcgcaaa atgcgttaaa ttcttcaaca gggcagccga gatccagtga
    16921 acattcagcc tgaagtgtcg gcatcagaat tgttttttcc ggactgagaa ttttggcggt
    16981 ttctcccata aatctcaccc cagcgactaa caaagtagaa gcgggatgct ttgcaccgaa
    17041 gcgcgccatt tccagagaat cagaaataca gccaccggtt tcttctgcca gttgttgaat
    17101 ttcgggatcg gtatagtagt gggcaaccat caccgcatta cgttctttta gcagacgttt
    17161 tatcttctcg cggtaatacg ctttttcatc aatgcttaac ggcgtcggct tcggggggaa
    17221 aggataaatc gccgtgtctg gatcaaacat tacgctcatc ttaccatctc gttttacagg
    17281 cttaacgtta aaaccgacat tagcgtaata ttcgctgtta tcggtgtaat ttgttttata
    17341 tgctaaacaa gatagtcgaa tggtggggaa aagtcactcg aattacgcct aattccaccg
    17401 acgtagagtt gcttgcacag taagctctga cgatgtcatc aggtttacaa agtaaaattg
    17461 aggatgcctg aatagcaaaa aagcgccttt agggcgcttt tttacattgg tgggtcgtgc
    17521 aggattcgaa cctgcgacca attgattaaa agtcaactgc tctaccaact gagctaacga
    17581 cccatacggg tgttacctga aagatttcta ctcggggcca atctttaaga ttggtgtgtc
    17641 gtgcaggatg actcgcttcg cttgccctac gggccgttgc tggcgcaacg ttatccttca
    17701 cgcttaacat ctgagtttga tgttaaaatt ggtgggtcgt gcaggattcg aacctgcgac
    17761 caattgatta aaagtcaact gctctaccaa ctgagctaac gacccgagtg gtgggtgatg
    17821 acgggatcga accgccgacc ccctccttgt aagggaggtg ctctcccagc tgagctaatc
    17881 acccgatact gcgctggata ctacaaacta cttccaccga acccatcgta attagtggtg
    17941 ggtcgggcag gatgactcgc ttcgctcgcc ctacgggccg ttgctgacgc aacgttatcc
    18001 tacacgcttg acatctgtct tcgatgctaa aactggtggg tcgtgcagga ttcgaacctg
    18061 cgaccaattg attaaaagtc aactgctcta ccgactgagc taacgacccg ctggtgggtg
    18121 atgacgggat cgaaccgccg accccctcct tgtaagggag gtgctctccc agctgagcta
    18181 atcacccaat actacgctgg atactacaac taactatgtt agtggtgggt cgtgcaggat
    18241 tcgaacctgc gaccaattga ttaaaagtca actgctctac caactgagct aacgacccac
    18301 tttttcgttg ctttcggttt gtttgatatc ccgtggcaac ggcggcatat attactgatt
    18361 tcagacttga gcgcaacaaa aatttcgatg cagatcactc aactgcttat gattcgcacg
    18421 acacgaccag aaataatgca acttctggtc gtgtgttatg cattacatcg cgttcagacg
    18481 tttttgtgcc tgtttagcgc catcagtacc agggtattta ctgataacct gctggtatac
    18541 ggctttcgct tttgcggtgt cacctttgtc ctgcatgatg acgccgactt taaacatcgc
    18601 atcagcagcc tttggtgact tcggatagtt tttcactacc gaagcaaaat agtacgccgc
    18661 atcatctttt ttacccttgt tgtagtttaa ctgacccagc caataattgg cgtttggcag
    18721 gtaagttgaa tcagcgtaat ttttgatgaa attctgaaat gccaccattg cgtcatcctg
    18781 gcgggattta tcctgcacca gcgcaatagc tgcattgtaa tccgtgtttg catcgccgct
    18841 tttcaccggc gcgccagcat tcgcagtacc agcatcagct gtcggcgttg ttgatgccgc
    18901 cgcaccgctt tgatcgctgc tggttgattg cgccgctgca ccaccgctgc tgaggctgtc
    18961 gatctgcaac aggatctgct tttgccgctc cacgacctga ttcagttgat actgattttc
    19021 ctgaatctga ccacgcaggg aatcaatatc ggattgatta tcagaaagtt gttgctggag
    19081 ttgggttaaa agctggctgt gagcattaga aatacgctca agttgagtga cgcggtcttc
    19141 gaccgagcct gagccgacac tactgattgg tgcctgagca aaagcggccc agggggccgc
    19201 tataccaacc agtaacgaca gactcaatag ttgatgtctg aagttactgc tcatgcaatt
    19261 ctcttagtaa accagtaccg cacgacggtt tttggagtat gccgcttcgt catgacccag
    19321 tactgcaggt ttttctttac cgtaagaaac gatggagatc tggtctgcag aaacgccttt
    19381 accctgcagg tacatcttaa cggcgttcgc acgacgttca cccagggaga tgttgtattc
    19441 cggagtacca cgttcgtccg cgtgaccttc tacggtgact ttgtaagacg ggttgctacg
    19501 caggaagttt gcatgtgcat ccagcatttg agcgaagtca gaacggatat cgtacttgtc
    19561 cagatcgaag taaacgatgt tgttctgctg cagctgttgc atttgcagac gagcctgctc
    19621 ttcggaagac atgttgccgt tgccgccgtt cgcatccata ccagtgccgg cacccagcat
    19681 gccttcgctg ccgtcattgc tggcgttctt gttggaagaa catgccgcaa ttgccataac
    19741 aggcagagca atcatcagcc ctttcagcac tttgttcagt tgcatttcaa tgattccttt
    19801 actattcaat taattattat cacagatacg gcgaccaggc agggaatttg acctgtccat
    19861 cagttgccgg aagacgcgct ttgaaacgcc catctgtaga aaccaaattc agcacggatc
    19921 ccatcccctg agaagagctg tagattacca tagtgccatt aggtgccaga cttggcgttt
    19981 catccaggaa cgtggacgac agaacttgta cgcctcccgt tgccagatct tgtttggcaa
    20041 tgtgctgctg cccaccattg gagctgacca ttaccataaa tttaccgtcg ctgctgacat
    20101 ccgcatcctg gttctgcgaa ccttcccagg taatacgttg tggcgcaccg ccgttgatat
    20161 tcactttata aacctgcgga cgaccggcct ggtcagaagt aaatgccagg ttctggctat
    20221 ccgggaacca ggtcggttcg gtattgttac tgcgaccatc agtcacctgg cggatctgac
    20281 cagaagccaa atccattacg tacaggttca gactaccggt tttcgacaag gcgaatgcca
    20341 gtttgctgcc gtctggcgag aatgcaggtg caccgttgtg acgcgggaat gaagccacct
    20401 gacgtacagc gccatttgcc agcgtctgaa taaccagcgc ggaacgaccg ctttcgaagg
    20461 tcacataagc cagtttagaa ccgtctggtg accacgccgg agacatcagc ggctgcggtg
    20521 aacggtgaac gacaaactgg ttgtaaccgt catagtcaga tacgcgcagt tcatacggga
    20581 actgaccgcc gttggtctga acaacgtagg caatacgggt acggaacgca cctttaatgc
    20641 cggtcagttt ttcaaacact tcatcactgg cggtatgacc agcataacgc agccactgct
    20701 tgttcacttt gtacgagttc tgagcaagta cagtacccgg tgcgccgcca gtgtcaacaa
    20761 gttgataagc aacattgtaa gaaccatccg gattcggagt gacctgaccg acaactacag
    20821 cgtcaatgcc cagtgcggac catgcagatg gttgtacttc ctgcgcacta cccggctgct
    20881 gtggcagacg agcgcgatct aacggattaa atttaccgct gttacgcaag tcagcagcaa
    20941 cgatgccgcc aatatcttca ggtgccgcac caggccccgc ccactggaaa ggaacaacac
    21001 caataggacg accggaatct acaccgctgt cgatcacaat gcggacttca gcatgcagaa
    21061 ctgatgccca cagtatgaga aaaccaaatg ctactcgtaa tgcctgcttc atcatatctc
    21121 ccttatctgg accgatggcc cacgataatt tagcagaatg ttaacaaact aaaatacaca
    21181 aaactaccag aaccccgtgg caaccggtgc ctgatgttga ccgtccgaac agtcaacatc
    21241 gcgattacgg tttgaagtcc aatggcgcgt ttttgaacac ttcatatact gcctggcttg
    21301 gtggtttcgg gatcttcgca agtttagctg ctgccaacgc agcctgacaa agtgcgggat
    21361 cgccaccttc aggtttgata tccagtaaca taccatcggg tgccagtttt atgcgcagcg
    21421 tacaggtttt gcctgcatag gacgatgcgt catagaactt actttcgata gcagatttaa
    21481 tctgcccggc atagttattg atatcggccc ctgatgcgcc attgttttta gtattaccac
    21541 tcccggcagg cgaagcattg ttccctttcg cccctccccc cgttttcggt gcattcttac
    21601 cagagcttag ctcaccgaaa atatcatctg cctctgcggc ggctttttct gccgctgctt
    21661 tcttatcagc tgctgccttt tcagcagccg ctttttctgc tgcttttttg tcggctgcag
    21721 ctttctctgc tgccgctttc ttctcagctt ctgctttggc tttttcagca gcttcagttg
    21781 ccgctttctt tcttgcttca gctgcagctg cttctgccgc ttccgctttc ttcttcagtg
    21841 ccgcagcggc tgcctcggct tttttctgcg ctgcggcttt ggcggcttct gcttctgctt
    21901 ttttctttgc gtctgcagcc gctttcttcg ctgcttcttc cgcagcttta gcatctgctt
    21961 cggccttcgc tttagcatct gccgccgctt tcgctgccgc ctcttcagct tgcttctgct
    22021 ttaactcggc ctgttttgca gcttcttcag cctgcttttt ctgctcctga gccgctaacc
    22081 gctctttctc aagttgcttc aggcgttcct gttcagccgc ttgtttctca cgcagttctt
    22141 cagcagcctg ctgttccttc atcttgcgct gttcatcaga acgcttcgcg cttgattcct
    22201 ggctttgcat gcgtttgtac tgctcaacta ccgcacctga atcaaccatg acagcgtcga
    22261 tggacgaacc accgccgcct ccggctgaag cttctatatt ctcatcgaac gaactccaga
    22321 tcagcgccgc aaataagatg acatgcagca ctgctgaaat aattatcgcc cgcttgagct
    22381 tgtcgttttg ttcggttgcc tttgacactc tcggtttcca aaaactgttc gcctgttacc
    22441 cgctctcttt caagcaaggg aaacgcagat gtttagatag gctgcgtcat taaaccaacc
    22501 gatttcacac ccgcactatg taacaagttc agtgctttaa ttatttcatc gtaaggcaca
    22561 tcttttgcgc caccgatcag aaagaccgtt ttcgggttgg ccttgaaacg gctggacact
    22621 tccgccacca cctgctctgg tggtaaacgc tccaggcgat ctttctcaac caccacggtg
    22681 tactgaccaa taccagacac ttcaacaatc actggcggat tatcgttact gctcaccgcc
    22741 tgtgattcag tagcgtctgg cagatcgacc tccacgctct gggtgatgat gggcgctgtc
    22801 gccatgaaga tcagcaacag caccagcagt acgtccagca acggtacaat gttgatttcg
    22861 gacttaagtt cgcgacgacc tcgtccacgc gctctggcca tgacttaccc cttattgctc
    22921 tcgctaacgg taaacgcctg gcggtgcaga atcgcggtaa actcttccat aaagttgtcg
    22981 taattcagtt ccagtttgtt tacgcgctgg ttgaggcggt tgtaggccat aactgccggg
    23041 atagcggcaa acagaccaat tgcagtcgca atcaacgctt ctgcgatacc gggcgcaacc
    23101 atttgcagtg ttgcttgttt taccgccccg agggcgataa aggcgtgcat gatcccccag
    23161 accgtaccaa acagaccaat atacgggctg atggagccaa ccgtaccgag gaacggaatg
    23221 tgcgtttcca gattttcaag ttcacggttc atggagatac gcatagcacg cgacgcccct
    23281 tccactacgg cttccggcgc atggctattg gcacgatgca ggcgcacaaa ctctttgaac
    23341 ccgctgtaaa atatttgttc cgaaccagtc agattatccc gtttcccctg actctcttga
    23401 tagaggcgag agagttcgat tccagaccag aatttatctt caaacgcttc ggcttcgcgc
    23461 gccgctgcgt taagaatacg ggtccgctgg ataataatgg cccaggatgc gattgaaaaa
    23521 ccaatcaaaa tcaacatgat aagtttaacc agaaggctag ccttcaggaa caaatcaagg
    23581 atattcatgt cagtcactgc ttaaactccg cgacaataga cttgggaagc gcacgaggct
    23641 tcattttgag tgggtcaacg caaacaacca gaacctctgc ttcattcagc aaagtattct
    23701 cggcgttgac aatacgttgc gtgaaaacca aagaggtgcc acgcattgat gttatttcag
    23761 tctgtatttc gagcatatcg tcgagccgcg caggtgcgta atattccacc gtcattttac
    23821 gtaccacaaa ggcaacgcgt tcagccatca gcgcctgctg actgaagtga tgatgacgca
    23881 gcatctctgt gcgtgctctt tcataaaaag cgacgtaact ggcgtggtac accacaccac
    23941 cggcatcggt atcttcatag tagacgcgaa ccagccatcg aaacagcgtt gtattcactt
    24001 tacatcccgg taatgcaaca aaagttagag cttttaaacg ctgctactat acgcgcgcga
    24061 ttgaggtttg ggaatgaggg caagttaagg gagcgtaaaa atttatgggc ctggagcggc
    24121 ccataatttt ttaaagagaa ttctgattta aaagaagaag aaaatcagcc cgataatgag
    24181 aacaatatcg gcaagcaatg ggcaaaaaat cccttgccaa agaaccttct gcggacgaaa
    24241 gcccacgccg tgaatcacac cagcacagac ggcccacatc agcaataaac catgccagat
    24301 ttccagttca ctggtcttcg cggcaaaacg agatgggtcc caaaacatac atcctgctaa
    24361 cagaagcgcc atcacgaagg aaagcgcccg cagggggcgc ttgtccatta ccgcatacaa
    24421 ggtcgcgata atcttactca tcagatgtct tcttgaccgg ctttgcctga ttcgacgtgt
    24481 tcaagcgcca gcgcggtgat taccccaaac gaacaggcaa gaagcgttcc cagaatccat
    24541 gcgaaatacc acatttttag ctccttactt agtacagaga gtgggtgtta cgttcaatat
    24601 cttctttggt gatacgaccg aacattttcc agtaacacca ggcggtgtag agcagaatga
    24661 tcggtaccag aaccaccgca acccaggtca tgacgttaag cgtcagctgg ctggaagttg
    24721 catcccacat tgtcagactt gcgttcatca tggtgctgga cggcatcaca aacgggaaca
    24781 ttgcgatacc ggctgtcagg atgatgcagg ccagcgtcag ggaggagaac acaaacgccc
    24841 acgcggcttt atccatacgt gcagtcagga tggtcagcag cggcagaacc acacccagtg
    24901 ccggaatagc ccacagaatt ggcgtgttgt tgaagttaac cagccatgcg ccagcttcac
    24961 gaaccacttc tttattcagt gggttagagg ctgcgtaatg gtccattgtc gatttcacga
    25021 cataaccatc gataccgtac atcacccata cgccagccag tgcgaaacag accagtgtca
    25081 ccagcgcagc cacctgagcc gttgcacggg tacgcaggtg cagttcaccc acggtacgca
    25141 tttgcagata ggttgcgccc tgagtaatga tcatccctac gctcaccacg cctgccagca
    25201 ggccgaacgg gttaagcaac tggaagaagt taccggtgta gtacagacgc agatattcat
    25261 caacgttgaa cggtacgccc tgcaacaggt taccgaacgc aacaccaatt accagcggcg
    25321 gaacgaagct accaatgaag atgccccagt cccacatgtt acgccagcgg gtttcttcaa
    25381 tcttggagcg gtagtcaaaa ccgaccggac ggaagaacaa agacgccagc acgaggatca
    25441 tcgccacata gaagccggag aacgcagcgg catagaccat cggccaggca gcaaagagtg
    25501 cgccgcccgc ggtgatcagc caaacctggt taccgtccca gtgtggtgca atggagttaa
    25561 tcataattcg acgctcggtg tcgttacgac cgaggaaacg ggtgagcatg cccaccccca
    25621 tgtcgaaacc gtcagtgact gcaaaaccaa tcagcagaac gccaaccagc agccaccaga
    25681 taaaacgcaa tacttcataa tcgatcattt gacgactcct gtcttagcgt gccggctgag
    25741 tagtcgtgga agactgctca aagtgatagc gaccggtttt caggctgctt gggccgaggc
    25801 gtgcaaattt gaacattaag aacaattctg ccaccaggaa cagggtatac aggccgcaaa
    25861 tcagcaccat tgagaagatg agatcgcctg cggtcagtga cgaattcgcc acagctgtcg
    25921 gcagcacttc accgatagcc cacggttggc ggccatattc agccacgaac cagcccgctt
    25981 ctacagcaat ccacggcagc ggaataccgt acagcgcggc gcgcagcagc cattttttct
    26041 cgccaatgcg gttgcggatg acactccaga aagagagcgc gatgattgcc agcagcagga
    26101 agccacacgc caccataata cggaacgcga agtacagcgg cgctacacgc ggaatggagt
    26161 ctttggttgc ctgttgaatc tgcgcttcag tcgcatcagc cacgtttggc gtatagcgtt
    26221 tcagcagcag accgtaaccg aggtctttct tcatgctatt gaactggtca cgaaccgcct
    26281 ggtcggtaga accagaacgc agttgttcga gcagagagta cgccttcatc ccgttacgaa
    26341 tgcgttcttc atgctgcacc atcagctctt tcaggccgat aaccggggta tccacggaac
    26401 gcgttgcaat gatgcccagt gcgtaaggga tctgaatcgc aaatttgttc gtctcctctt
    26461 cctgatcagg aatgccgaac agagtaaagg cagcaggcgc aggttgcgtt tcccactcgg
    26521 cttcaatagc agccagtttg gttttctgca cgtcgcccat ttcgtagccg gattcatcac
    26581 ccagaacaat aacagacaga acagcagcca taccgaagct ggcagcgata gcaaaggagc
    26641 gtttagcgaa ggcgaagtca cgacctttca gcatatacca tgcgctgata ccgaggatga
    26701 acatcgcgcc agtcacataa ccagacgcta cagtgtgaac gaatttcacc tgagcaaccg
    26761 ggttaagcac cagctcggag aagctcacca tctccatacg catagtttca aagttgaaat
    26821 cggacgcgat tgggttttgc atccagccgt tcgcaaccag aatccacagt gcggacaggt
    26881 ttgaaccgag cgccaccagc caggtgacac acatatgctg aactttaccc agacgatccc
    26941 aaccgaagaa gaacagacct acaaaggtgg attcgaggaa gaaggccatc agaccttcga
    27001 ttgccagcgg cgcaccgaag atatccccta catagtggga atagtaagac cagttagtcc
    27061 cgaactggaa ctccatggtc agaccggtag ccacacccag agcgaagttg ataccaaaca
    27121 acttgcccca gaacttggtc atatctttat aaatctgttt gccggagagg acgtagaccg
    27181 tttccataat ggccagcagg aacgccatac cgagcgtcag tggcacaaaa aggaagtggt
    27241 acatcgcggt caaggcaaac tgtaagcgcg acagttcgac tatatctaac atcatgactc
    27301 cttgctcatc gcatgaagac tccgagagtg aaccccgtta gaaagggtca cacgcatgcc
    27361 ccaatagaaa tttgtttgaa cactttcatc ataccatgtg aatgcacaca aaaacggcgt
    27421 aaagaaaggt tgcaaacatg ttaataaaaa ctcaaattga tcccacgtat atattacgcc
    27481 gcaaaatcct tacaataaac aggtttttgt tgaagcaaat ttgcattttt cgacggtgat
    27541 caatttatag ctaaattacc gcctttcagc caatttgatc gagaacaatt tatctctttt
    27601 tgatgcccat ttccaagact tatacattga taaatatcaa ttcctacaaa ttatgttaat
    27661 catgtttcaa taaggtaact ttagtgacat ttatgtttaa aatgtgtgag ttataaggct
    27721 gaaattagtt tcggttggca attaaagata aaaagagacg aagcaaaaac agcacggttg
    27781 accttaattc tttttttggt cactggctaa tacgacgcag agtttcagga ttactaataa
    27841 aggcataaat ccacccccgc cgatgttaac atttaattaa cttataatta tattataatt
    27901 aactcaccca gggttattat tttgttaaaa ataaagccac atatacgtgg cttgagagtg
    27961 aagataaacg caaaattacc tgatgcgcta cgcttgccag tgtctacatc atctctgcaa
    28021 tatattgaat ttgcctgctt ttgtagaccg aataaagcgt tcatgccgta tccggcatga
    28081 acaaagcgcc ctttgtcaac aatctggccg cgcatatgtg gcttcggttt gattgctatt
    28141 caggcaagcc ggtaactgaa cgtccgtgac tggccgggta aaaaaggccc cgatagattt
    28201 gaaccttgat tttcctcggt ggtaatgtgt tcatccatca tcgtttctga gcaagaaatc
    28261 acctcgcgac tgaaagcaac agtcgcatca caggttgctg attcagccgg attaaacagc
    28321 cgtaaaatca cttcttgtcg gtcttcagct ttcttaagtg cgcttatcag gcatcccact
    28381 gggggcattt tcaacaaact ataactttcc ggcacgttga atccggcttt gttgagcttc
    28441 atcgcatccc atgggatttt gttgtaacac tgtactggag tcagccatgc tcgcgcctgc
    28501 tgagctacac cagcggcggt tggcgtaccg gtataactca ataaacttag gcgacaagaa
    28561 agcagaccac gtagttgtga gtccgggact ggcattttaa ttcccgaagg ccgcccaggc
    28621 cttaaaagca gatcttcttt gcccagtaag cccacgccac gcagcaacgt aatggcaaag
    28681 gttttcttct cttcaccgat gacttcaaat tcacgtaacc cttcgctaaa gacagccatg
    28741 ccgttacgcc cttcctgtaa ggcaacatag ttgagcatat tccataccgg aaccggcgct
    28801 tctttccagc cttcttgctg ccagttgttc attgcactgt cgttcacggg gcgcgttagc
    28861 gaaccaaact gcgtatctgc cagaacactg tcggtgttaa aaggtgtagg gaccaggaca
    28921 cgaaggcgat gatcgtcagc ctggttatca aggttgatat ccacatcaat acgcctgctg
    28981 ttatgactaa gagtgacaac caacaccacc cctactctgc cagtggattg ccgggcgctg
    29041 cgttctgaca aattgagcgg cactgccatg tcatagcgga taacagccct gctctgccag
    29101 acttcatgaa taatatcgca ttgcggtttc gcgttcgctg cggtaattac ccactcttct
    29161 tttgcgggtg aatagtcata ttcatcacca tcatcagagc tttcttcaat
//
LOCUS       DADMHM010000034        29191 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.035, whole genome shotgun sequence.
ACCESSION   DADMHM010000034 DADMHM010000000
VERSION     DADMHM010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 29191)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29191)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29191
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.035"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(1..1750)
                     /locus_tag="JN125_001278"
                     /pseudo
     CDS             complement(1..1750)
                     /locus_tag="JN125_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415354.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
     gene            complement(1928..2839)
                     /gene="gsiD"
                     /locus_tag="JN125_001279"
     CDS             complement(1928..2839)
                     /gene="gsiD"
                     /locus_tag="JN125_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001236035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter permease GsiD"
                     /protein_id="HAY8871112.1"
                     /translation="MRLFNWRRQAVLNAMPLVKPDQVRTPWHEFWRRFRRQHMAMTAA
                     LFVILLIVVAIFARWIAPYDAENYFDYDNLNNGPSLQHWFGVDSLGRDIFSRVLVGAQ
                     ISLAAGVFAVFIGAAIGTLLGLLAGYYEGWWDRLIMRICDVLFAFPGILLAIAVVAVL
                     GSGIANVIIAVAIFSIPAFARLVRGNTLVLKQQTFIESARSIGASDMTILLRHILPGT
                     VSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNEARADMVIAPHVAVFPA
                     LAIFLTVLAFNLLGDGLRDALDPKIKG"
     gene            complement(2842..3762)
                     /gene="gsiC"
                     /locus_tag="JN125_001280"
     CDS             complement(2842..3762)
                     /gene="gsiC"
                     /locus_tag="JN125_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter permease GsiC"
                     /protein_id="HAY8871113.1"
                     /translation="MLNYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEAD
                     AQVIELVRQQLGLDQPLYHQFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLT
                     ITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMLLIQVFSVELG
                     WLPTVGADSWQHYILSSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWV
                     VLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQA
                     EILLFSLEFILINLVVDVLYAAINPAIRYK"
     gene            complement(3780..5318)
                     /gene="gsiB"
                     /locus_tag="JN125_001281"
     CDS             complement(3780..5318)
                     /gene="gsiB"
                     /locus_tag="JN125_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter substrate-binding
                     protein GsiB"
                     /protein_id="HAY8871114.1"
                     /translation="MARAVHRSGLVALGIATALMASCAFAAKDVVVAVGSNFTTLDPY
                     DANDTLSQAVAKSFYQGLFGLDKEMKLKNVLAESYTVSDDGITYTVKLREGIKFQDGT
                     DFNAAAVKANLDRASDPANHLKRYNLYKNIAKTEAIDPTTVKITLKQPFSAFINILAH
                     PATAMISPAALEKYGKEIGFHPVGTGPYELDTWNQTDFVKVKKFAGYWQPGLPKLDSI
                     TWRPVADNNTRAAMLQTGEAQFAFPIPYEQAALLEKNKNIELMASPSIMQRYISMNVT
                     QKPFDNPKVREALNYAINRPALVKVAFAGYATPATGVVPPSIAYAQSYKPWPYDPVKA
                     RELLKEAGYPNGFSTTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEV
                     EGKGQKESGVRMFYTGWSASTGEADWALSPLFASQNWPPTLFNTAFYSNKQVDDFLAQ
                     ALKTNDPAEKTRLYKAAQDIIWQESPWIPLVVEKLVSAHSKNLTGFWIMPDTGFSFED
                     ADLQ"
     gene            complement(5338..7209)
                     /gene="gsiA"
                     /locus_tag="JN125_001282"
     CDS             complement(5338..7209)
                     /gene="gsiA"
                     /locus_tag="JN125_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415350.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione ABC transporter ATP-binding protein
                     GsiA"
                     /protein_id="HAY8871115.1"
                     /translation="MPHSDELDAGNVLAVENLNIAFMQDQQKIAAVRNLSFSLQRGET
                     LAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLQRRSREVIELSEQSAAQMRHVR
                     GADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQNASREEAMVEAKRMLDQVRIPEAQT
                     ILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEM
                     SMGVIFITHDMGVVAEIADRVLVMYQGEAVETGTVEQIFHAPQHPYTRALLAAVPQLG
                     AMKGLDYPRRFPLISLEHPAKQDPPIEQKTVVDGEPVLRVRNLVTRFPLRSGLLNRVT
                     REVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS
                     PGKLQALRRDIQFIFQDPYASLDPRQTIGDSIIEPLRVHGLLPGKDAAARVAWLLERV
                     GLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD
                     LQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTRKLLAA
                     VPVAEPSRQRPQRVLLSDDLPSNIHLRGEEVAAVSLQCVGPGHYVAQPQSEYAFMRR"
     gene            complement(7196..8161)
                     /gene="iaaA"
                     /locus_tag="JN125_001283"
     CDS             complement(7196..8161)
                     /gene="iaaA"
                     /locus_tag="JN125_001283"
                     /EC_number="3.4.19.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-aspartyl-peptidase"
                     /protein_id="HAY8871116.1"
                     /translation="MGKAVIAIHGGAGAISRAQMSLQQELRYIEALSAIVETGQKMLE
                     AGESALDVVTEAVRLLEECPLFNAGIGAVFTRDETHELDACMMDGNTLKTGAVAGVSH
                     LRNPVLAARLVMEQSPHVMMIGEGAENFAFARGMERVSPEIFSTPLRYEQLLAARKEG
                     ATVLDHSGAPLDEKQKMGTVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGC
                     YANNASVAVSCTGTGEVFIRALAAYDIAALMDYGGLSLAEACERVVMEKLPALGGSGG
                     LIAIGHEGNVALPFNTEGMYRAWGYAGDTPTTGIYREKGDTVATQ"
     gene            8365..9600
                     /gene="moeA"
                     /locus_tag="JN125_001284"
     CDS             8365..9600
                     /gene="moeA"
                     /locus_tag="JN125_001284"
                     /EC_number="2.10.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HAY8871117.1"
                     /translation="MEFTTGLMSLDTALNEMLSRVTPLTAQETLPLVQCFGRILASDV
                     VSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGA
                     PVPEGCEAVVMQEQTEQTDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAE
                     LPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGC
                     EVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKTILEELGEIAFWKL
                     AIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVR
                     TASRLKKTPGRLDFQRGVLQRNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGN
                     VDVGEWVEVEPFNALFGGL"
     gene            9600..10349
                     /gene="moeB"
                     /locus_tag="JN125_001285"
     CDS             9600..10349
                     /gene="moeB"
                     /locus_tag="JN125_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-synthase adenylyltransferase MoeB"
                     /protein_id="HAY8871118.1"
                     /translation="MAELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGC
                     AASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIA
                     ITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQ
                     ITVFTYQDGEPCYRCLSRLFGENALTCVEAGVMAPLIGVIGSLQAMEAIKLLAGYGKP
                     ASGKIVMYDAMTCQFREMKLMRNPGCEVCGQ"
     gene            complement(10425..11087)
                     /gene="fsa"
                     /locus_tag="JN125_001286"
     CDS             complement(10425..11087)
                     /gene="fsa"
                     /locus_tag="JN125_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415346.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HAY8871119.1"
                     /translation="MELYLDTSDVVAVKALSRIFPLAGVTTNPSIIAAGKKPLDVVLP
                     QLHEAMGGQGRLFAQVMATTAEGMVNDARKLRSIIADIVVKVPVTAEGLAAIKMLKAE
                     GIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRIDAQGGSGIQTVTDLHQLLKMHAPQA
                     KVLAASFKNPRQALDCLLAGCESITLPLDVAQQMISYPAVDAAVAKFEQDWLGAFGRT
                     SI"
     gene            11218..12117
                     /locus_tag="JN125_001287"
     CDS             11218..12117
                     /locus_tag="JN125_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415345.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycyl-radical enzyme activating protein"
                     /protein_id="HAY8871120.1"
                     /translation="MIFNIQRYSTHDGPGIRTVVFLKGCSLGCRWCQNPESRARTQDL
                     LYDARLCLEGCELCAKAAPEVIERALNGLLIHREKLTPEHLTALTDCCPTQALTVCGE
                     VKSVEEIMATVLRDKPFYDRSGGGLTLSGGEPFMQPEIATALLQACHEAGIHTAVETC
                     LHVPWKYIAPSLPYIDLFLADLKHIADAPFKQWTDGNAAKVLDNLKKLAAAGKKIIIR
                     VPLIQGFNADETSVKAITDFAADELHVGEIHFLPYHTLGINKYHLLNLPYDAPEKPLD
                     APDLLDFAQQYACQKGLTATLRG"
     gene            12123..14555
                     /locus_tag="JN125_001288"
     CDS             12123..14555
                     /locus_tag="JN125_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycyl radical protein"
                     /protein_id="HAY8871121.1"
                     /translation="MTTLKLDTLSDRIKAHKNALVHIVKPPVCTERAQHYTEMYQQHL
                     DKPIPVRRALALAHHLANRTIWIKHDELIIGNQASEVRAAPIFPEYTVSWIEKEIDDL
                     ADRPGAGFAVSEENKRVLHEVCPWWRGQTVQDRCYGMFTDEQKGLLATGIIKAEGNMT
                     SGDAHLAVNFPLLLEKGLDGLREKVAERRSRINLTVLEDLHGEQFLKAIDIVLVAVSE
                     HIERFAALAREMAATETRESRRDELLAIAENCDLIAHQPPQTFWQALQLCYFIQLILQ
                     IESNGHSVSFGRMDQYLYPYYRRDVELNQTLDREHAIELLHSCWLKLLEVNKIRSGSH
                     SKASAGSPLYQNVTIGGQTLVDGQPMDAVNPLSYAILESCGRLRSTQPNLSVRYHAGM
                     SNDFLDACVQVIRCGFGMPAFNNDEIVIPEFIKLGIEPQDAYDYAAIGCIETAVGGKW
                     GYRCTGMSFINFARVMLAALEGGRDATSGNVFLPQEKALSAGNFNNFDEVMDAWDTQI
                     RYYTRKSIEIEYVVDTMLEENVHDILCSALVDDCIERAKSIKQGGAKYDWVSGLQVGI
                     ANLGNSLAAVKKLVFEQGTIGQQQLAAALADDFDGLTHEQLRQRLINGAPKYGNDDDT
                     VDTLLARAYQTYIDELKQYHNPRYGRGPVGGNYYAGTSSISANVPFGAQTMATPDGRK
                     AHTPLAEGASPASGTDHLGPTAVIGSVGKLPTAAILGGVLLNQKLNPATLENESDKQK
                     LMILLRTFFEVHKGWHIQYNIVSRETLLEAKKHPDQYRDLVVRVAGYSAFFTALSPDA
                     QDDIIARTEHML"
     gene            14701..15516
                     /gene="ybiV"
                     /locus_tag="JN125_001289"
     CDS             14701..15516
                     /gene="ybiV"
                     /locus_tag="JN125_001289"
                     /EC_number="3.1.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-phosphatase YbiV"
                     /protein_id="HAY8871122.1"
                     /translation="MSVKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIEFVVAS
                     GNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQL
                     NFVACGLQSAYVSENAPEAFVALMAKHYHRLKAVKDYQEIDDVLFKFSLNLPDEQIPL
                     VIDKLHIAFDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGN
                     DAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVIQAVLDNTSPFNS"
     gene            15668..16933
                     /locus_tag="JN125_001290"
     CDS             15668..16933
                     /locus_tag="JN125_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1479 domain-containing protein"
                     /protein_id="HAY8871123.1"
                     /translation="MASTFTSDTLPADHKAAIRQMKHALRAQLGDVQQIFNQLSDDIA
                     TRVAEINALKAQGDAVWPVLSYADIKAGHVTAEQREQIKRRGCAVIKGHFPREQALGW
                     DQSMLDYLDRNRFDEVYKGPGDNFFGTLSASRPEIYPIYWSQTQMQARQSEEMANAQS
                     FLNRLWTFESDGKQWFNPDMSVIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQ
                     RVFANVFNGNLAQYDPWHAAHRTEVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLL
                     HVVPIPEAMAYVLLRTLLDDVPEDELCGVAPGRVLPVSEQWHPLLIEALTSIPKLEAG
                     DSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCKKNLAYAHKVKAALEKGASPGDFP
                     REDYETNWEGRFTLADLNIHGKRALGMDV"
     gene            complement(17174..18766)
                     /locus_tag="JN125_001291"
     CDS             complement(17174..18766)
                     /locus_tag="JN125_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATPase"
                     /protein_id="HAY8871124.1"
                     /translation="MLVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFM
                     KILGGDLEPTLGNVSLDPNERIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRI
                     YALPEMSEEDGYKVADLEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGW
                     KLRVLLAQALFADPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMV
                     CTHMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANA
                     SKSRQATSRARQIDKIKLEEVKASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPL
                     FKNLNLLLEVGEKLAVLGTNGVGKSTLMKTLVGDLQPDSGTVKWSENARIGYYAQDHE
                     YEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFG
                     KLMMQKPNILIMDEPTNHLDMESIESLNMALELYQGTLIFVSHDREFVSSLATRILEI
                     TPERVIDFSGNYEDYLRSKGIE"
     gene            18985..19905
                     /gene="ldtB"
                     /locus_tag="JN125_001292"
     CDS             18985..19905
                     /gene="ldtB"
                     /locus_tag="JN125_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HAY8871125.1"
                     /translation="MNMKLKTLFAAAFAVVGFCSTASAVTYPLPTDGSRLVGQNQVIT
                     IPEGNTQPLEYFAAEYQMGLSNMMEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIV
                     INSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE
                     YRAAGEPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDI
                     KFLFEKVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTTEAQFEGQEIVPITLTKS
                     VQTVTGQPDVDQVVLDEAIKNRSGMPVRLN"
     gene            complement(19964..21082)
                     /locus_tag="JN125_001293"
     CDS             complement(19964..21082)
                     /locus_tag="JN125_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion transporter"
                     /protein_id="HAY8871126.1"
                     /translation="MSLPFLRTLQGDRFFQLLILVGIGLSFFVPFAPKSWPAAIDWHT
                     IITLSGLMLLTKGVELSGYFDVLGRKMVRRFATERRLAMFMVLAAALLSTFLTNDVAL
                     FIVVPLTITLKRLCEIPVNRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFI
                     AQMAPLAGAMMLTLLLLCWCCFPGKVLQYHTGVQTPEWKPRLVWSCLGLYIVFLTALE
                     FKQELWGLVIVAAGFALLARRVVLSVDWTLLLVFMAMFIDVHLLTQLPALQGVLGNVS
                     HLSEPGLWLTAIGLSQVISNVPSTILLLNYVPPSLLLAWAVNVGGFGLLPGSLASLIA
                     LRMANDRRIWWRFHLYSIPMLLWAALVGYVLLVILPAN"
     gene            complement(21079..21546)
                     /locus_tag="JN125_001294"
     CDS             complement(21079..21546)
                     /locus_tag="JN125_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator MntR"
                     /protein_id="HAY8871127.1"
                     /translation="MSRRAGTPTAKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVEL
                     ISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLA
                     QESRERHQIVENFLLVLGVSPEIARRDAEGMEHHVSEETLDAFRLFTQKHGAK"
     gene            21732..21860
                     /gene="mntS"
                     /locus_tag="JN125_001295"
     CDS             21732..21860
                     /gene="mntS"
                     /locus_tag="JN125_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganase accumulation protein MntS"
                     /protein_id="HAY8871128.1"
                     /translation="MNEFKRCMRVFSHSPFKVRLILLSMLCDMVNNKPQQDKPSDK"
     gene            22132..23715
                     /locus_tag="JN125_001296"
     CDS             22132..23715
                     /locus_tag="JN125_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoethanolamine transferase"
                     /protein_id="HAY8871129.1"
                     /translation="MNLTLKESLVTRSRVFSPWTAFYFLQSLLINLGLGYPFSLLYTA
                     AFTAILLLLWRTLPRVQKVLVGVSSLVAACYFPFAQAYGAPNFNTLLALHSTNMEEST
                     EILTIFPWYSYLVGLFIFALGVIAIRRKKENEKARWNTFDSLCLVFSVATFFVAPVQN
                     LAWGGVFKLKDTGYPVFRFAKDVIVNNNEVIEEQERMAKLSGMKDTWTVTAVKPKYQT
                     YVVVIGESARRDALGAFGGHWDNTPFASSVNGLIFADYIAASGSTQKSLGLTLNRVVD
                     GKPQFQDNFVTLANRAGFQTWWFSNQGQIGEYDTAIASIAKRADEVYFLKEGNFEADK
                     NTKDEALLDMTAQVLAQEHSQPQLIVLHLMGSHPQACDRTQGKYETFVQSKETSCYLY
                     TMTQTDDLLRKLYDQLRNSGSSFSLVYFSDHGLAFKERGKDVQYLAHDDKYQQNFQVP
                     FMVISSDDKAHRVIKARRSANDFLGFFSQWTGIKAKEINIKYPFISEKKAGPIYITNF
                     QLQKVDYNHLGTDIFDPKP"
     gene            complement(23764..24279)
                     /gene="ompX"
                     /locus_tag="JN125_001297"
     CDS             complement(23764..24279)
                     /gene="ompX"
                     /locus_tag="JN125_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein OmpX"
                     /protein_id="HAY8871130.1"
                     /translation="MKKIACLSALAAVLAFTAGTSVAATSTVTGGYAQSDAQGQMNKM
                     GGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASI
                     YGVVGVGYGKFQTTEYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDV
                     GTWIAGVGYRF"
     gene            complement(24332..24397)
                     /locus_tag="JN125_001298"
     CDS             complement(24332..24397)
                     /locus_tag="JN125_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871131.1"
                     /translation="METFCYMKWPVRHHKSRRVSH"
     gene            24632..25519
                     /gene="rhtA"
                     /locus_tag="JN125_001299"
     CDS             24632..25519
                     /gene="rhtA"
                     /locus_tag="JN125_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/homoserine exporter RhtA"
                     /protein_id="HAY8871132.1"
                     /translation="MPGSLRKMPVWLPIVILLVAMASIQGGASLAKSLFPLVGAPGVT
                     ALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVA
                     LEFTGPLAVALFSSRRPVDFVWVVLAVLGLWFLLPLGQDVSHVDLTGCALALGAGACW
                     AIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSVIPLGLAVAILS
                     TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTPIQLLALGAIIAAS
                     MGSTLTVRKESKIKELDIN"
     gene            25818..26321
                     /gene="dps"
                     /locus_tag="JN125_001300"
                     /gene_synonym="pexB"
     CDS             25818..26321
                     /gene="dps"
                     /locus_tag="JN125_001300"
                     /gene_synonym="pexB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001730644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein Dps"
                     /protein_id="HAY8871133.1"
                     /translation="MSTAKLVKSKATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLS
                     LITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKT
                     PLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLW
                     FIESNIE"
     gene            26725..27471
                     /gene="glnH"
                     /locus_tag="JN125_001301"
     CDS             26725..27471
                     /gene="glnH"
                     /locus_tag="JN125_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine ABC transporter substrate-binding
                     protein GlnH"
                     /protein_id="HAY8871134.1"
                     /translation="MKSVLKVSLAALTLVFAVSSHAADKKLVVATDTAFVPFEFKQGD
                     KYVGFDVDLWAAIAKELKLDYELKPMDFSGIIPALQTKNVDLALAGITITDERKKAID
                     FSDGYYKSGLLVMVKANNNDVKSVKDLDGKVVAVKSGTGSVDYAKANIKTKDLRQFPN
                     IDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGCDEL
                     RDKVNGALKTLRENGTYNEIYKKWFGTEPK"
     gene            27610..28269
                     /gene="glnP"
                     /locus_tag="JN125_001302"
     CDS             27610..28269
                     /gene="glnP"
                     /locus_tag="JN125_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015367581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine ABC transporter permease GlnP"
                     /protein_id="HAY8871135.1"
                     /translation="MQFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFAR
                     TFGGWIANHVALVFIEVIRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSG
                     AYIAEITRGAVLSIHKGFREAGLALGLSRWETIRYIILPLALRRMLPPLGNQWIISIK
                     DTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVFYLIITLVLSFILRRLERRMKI
                     L"
     gene            28266..28988
                     /gene="glnQ"
                     /locus_tag="JN125_001303"
     CDS             28266..28988
                     /gene="glnQ"
                     /locus_tag="JN125_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017491583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine ABC transporter ATP-binding protein
                     GlnQ"
                     /protein_id="HAY8871136.1"
                     /translation="MIEFKNVSKHFGPTQVLHNIDLNIAQGEVVVIIGPSGSGKSTLL
                     RCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGP
                     LRVRGANKEEAEKLARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKMMLF
                     DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDG
                     NPQVLIKNPPSQRLQEFLQHVS"
BASE COUNT         7259 a         7768 c         7168 g         6996 t
ORIGIN      
        1 tcagcaatgg taatgaactt cagcggtgaa atgatccccc tctccgcaga aacccaacgg
       61 cacaacgcct ccgcgcccag aatggcgcgg gtgttaatat caacgatcgg ttgatagacg
      121 aggaatagtt cgccaatttc cattgcatgg cgaatattac gcgcaatcca gatattctct
      181 tctatttcgt tgagtttcgc gtcatcacag aaaataaact cggagaacat atggtcacgg
      241 atactggaaa tcgccagttt cagtttttct gcgtaactcc aggcgttttc cccctgcaaa
      301 ggttcacaaa tggcagactt atggatgcgc agattgcggt agccaaagct gctgtcaaaa
      361 tcgtttacca tcgctatttt acgggtaaat gtctgtacat tttcccgaca cagaagtaaa
      421 tagagatcgg cattgaatgt cacgatatcg cagcattgcg catatttctc ggcaattcgc
      481 tgacacaatt tcctgacgat tttattgcgt tcatcaacac caaacaccgc ttccacggct
      541 tccagaccac acagtttgat gatccccaca gccagatact gattattgtt ggactcaata
      601 atcgccatat ttttaataaa accgctttcc tgatcgtaag agatcagtga gagcaattta
      661 tttgaccgtt caatttcggc atctttcatt tccgcgatcg aatttttgat gctgataatc
      721 tctttcgcat cgccttcgcg aattttcaga gcctcgatct gatccgttga gtcgggcaaa
      781 aatgccagcg tattaaccag ctcggtcatt tcagaaaatt gccgacggaa cacacgagtg
      841 gtcatgaaat ataccaccag caacacgata ataatgaacg caaacggtag ataaaaaagt
      901 ttatctgatg cgttcaataa attaccgcca ggataataaa aatagatttc gaacaatgca
      961 ttatttggca ctgctgatgt ctttgcaata tactccgtat cgacagaatc aataatatga
     1021 taattacctt cgctattata aataatcagt ttttcacgag cgagttgatt cttggcaatg
     1081 atctcatgac cttgtttcaa aaatagaact tcatcattag cgctgatttg atcaagatac
     1141 tcgttcaaat accgccagtt taaatcgaca tgaattttat ctaccgctaa caaatcgtga
     1201 tctttgccgt tgatacgtag cgtaaaagag atacattttt tacccggacg atcaaagcaa
     1261 ttgtatgccg gattccagct gttgttagag tcatctgaag ccaccgacca cggtcgtttc
     1321 gatgggttaa aatcggcaaa aataacccgc cctgactcgt cgacaagcgg tccatttact
     1381 tgttcctgat gataaacaac gattttatca ttcgccctcc gtgaaaagag ataatattta
     1441 ttatcatcaa gtaccagtcc caccgagtct aaaaatggca tcatttccat tttcagaatc
     1501 acggcgcgtt gaatctcctc tgtatttata aatacagtga gtcctttaat gtcagggccg
     1561 aacgttcaat atctttaaag aaatagccaa cgtttttctg aataagttca aagcggctat
     1621 cggcacgttt taccgcgcgt tccgatacca gttgatagtt aatgatgaaa aaaagaccaa
     1681 taaatgacag tgctgccaat aaaaataaaa ttatcagcct tatctttatc ttttcgtata
     1741 aactcagcat gttaatacat ttaacaaaat aactatctga acgctgtgcc gctgcaaaaa
     1801 tagtcccttg ctgcggcttt ttaaccaaat tacccgattc tacaaaatca gcagaaagtt
     1861 acaacacttg cttagggcaa taatttcctg tgaggtgatt accctttcaa gcaatattca
     1921 aacgtaacta tcctttaatt ttcggatcca gcgcatcgcg taaaccatcg cccaacaaat
     1981 tgaacgccag tacggtcaga aaaatagcca gggccggaaa aacagcgaca tgcggcgcga
     2041 taaccatatc cgctcgtgcc tcattgagca ttgctcccca ctctggtgtc ggcggctgcg
     2101 caccgaggcc gagaaatgac aggctggcgg cagagataat cgaggtgcca atgcgcatgg
     2161 tgaaaaacac cacgatagac gagacggtcc caggcaagat atgacgcaat aaaatggtca
     2221 tatcgctggc accaatactg cgtgctgact caataaaggt ttgctgtttc aacaccagcg
     2281 tgttgccgcg caccagtcgg gcaaacgcgg ggatggaaaa aatggcgact gcgataatca
     2341 cgttagcaat gccgcttccc aacaccgcaa caacagcgat cgccagtaaa atacccggga
     2401 aggcaaacag cacatcgcaa atgcgcatga tcagccgatc ccaccagcct tcataatatc
     2461 cagccaacaa gcccagcaac gtcccgatcg ccgcaccgat aaacacggca aacacgcccg
     2521 ccgccagcga gatttgcgca ccaaccagga cacggctgaa aatgtcgcgc cccagtgaat
     2581 cgacgccaaa ccagtgctgc aaagaaggtc cgttattcag attgtcataa tcaaaataat
     2641 tttcggcgtc atagggagcg atccagcgtg caaaaatggc caccacaatc aataaaataa
     2701 cgaataatgc ggcggtcatc gccatatgct gacggcgaaa tcgtcgccag aattcatgcc
     2761 acggtgtacg cacctggtca ggtttgacca gtggcatggc gtttaacacc gcctgacgtc
     2821 gccagttaaa tagtcgcatc cttacttgta cctgatagcc gggttaatgg cggcgtaaag
     2881 cacatccacc actaagttga taagaataaa ttccagcgag aaaagcagaa tttccgcctg
     2941 aatcaccggg taatcgcgca tttctacgga gtcaacgagt aagcgtccaa gtccgggcca
     3001 gttgaaaact ttctccacca cgatagaacc accgagcaaa aagccaaact gtaagcccat
     3061 catggtcact accgggatca tcgcgttacg tagcccgtgt ttgaggacaa cccaggtttc
     3121 gctcacccct ttcgccctcg cggtacgcat ataatcttcg cttaaaacat cgacaaacga
     3181 cgcgcgggta aagcgcgcca tcacggctgc cactgccgcg ccgagcgtca gggaggataa
     3241 aatgtagtgc tgccaactgt ctgctcccac ggtaggcagc cagcccagtt caacggagaa
     3301 tacctgaatt aaaagcatcc ccagcgcaaa tgccggaaac gagatccccg acaccgcaat
     3361 ggtcatactc aatcgatccg gccaacgatt acgccagacg gcggcgataa ttcccgccgc
     3421 cataccaaat atcaccgccc agaccatact ggttatggtc agccacagcg ttggcataaa
     3481 gcggctggca atctcatcgg caaccggacg acgcgacacc atcgacaggc caaaatcccc
     3541 ctgcacagca ttgctgatat agtgccagaa ctggtgatac agcggctgat ccaaccccag
     3601 ctgctgacgc accagttcta taacctgcgc atcagcttcg ggcccggcaa tcaatcgcgc
     3661 cggatcgccg ggcagcatat gcacaaataa aaacaccagc accgagacga taaacagcgt
     3721 cggaatcaac cccagtaagc gtttgataac gtaattaagc attccactcc ctgcgttgct
     3781 tattgcaaat ccgcgtcttc aaagctgaag ccggtgtctg gcatgatcca aaaaccggtc
     3841 aggtttttac tgtgtgccga caccagtttt tctaccacca gcgggatcca cggcgactct
     3901 tgccagatga tatcctgcgc cgccttatac aagcgggtct tttccgccgg atcattagtt
     3961 ttcagtgcct gagccaggaa gtcgtccacc tgtttattgc tgtaaaatgc ggtattaaac
     4021 agcgtcggtg gccagttttg cgaggcgaac agtggcgata gcgcccagtc cgcttcgccg
     4081 gttgaagccg accagccagt gtagaacatc cgcacgccgc tctctttttg ccctttacct
     4141 tcaacttctg ccgcccgctg tccggcatcc atcgcggtca cctgggcttt aatcccgacc
     4201 tgcgctaact gctgctgggt aaattgcagc actttctgcg cggtgctgtg gttatgtgac
     4261 gaccacagcg tggtactgaa accgttggga tatcccgcct ctttcagtaa ttcgcgcgct
     4321 ttcactggat cgtaaggcca cggtttataa ctttgcgcgt aggcgatact tggcggtacc
     4381 acaccagtag ctggcgttgc atagcccgca aaggcaactt tcaccagcgc cggacggtta
     4441 atggcgtaat tcagcgcctc acggaccttc gggttatcga acggcttttg cgtcacgttc
     4501 atactgatat aacgctgcat aattgacgga ctggccatca actcgatatt tttgtttttc
     4561 tccagcagtg cggcctgctc gtagggaatg gggaaagcaa actgcgcttc accggtttgc
     4621 agcattgccg cgcgggtgtt gttatccgcc accggacgcc aggttatgct gtccagtttg
     4681 ggcaatcctg gctgccagta acccgcgaat tttttcacct tcacaaaatc ggtctgattc
     4741 caggtatcca gttcatacgg tccggttccc accggatgaa aaccaatctc cttgccatat
     4801 ttttccagcg ctgccggtga aatcatcgcg gtcgccggat gggcaagaat attaataaac
     4861 gctgagaacg gctgtttgag ggtaatcttt accgttgtcg gatcgatcgc ctccgttttg
     4921 gcaatattct tatacaggtt atagcgttta agatgattcg ccggatcgct ggcccggtcc
     4981 agattcgctt tcaccgccgc ggcgttgaaa tcggtgccat cctggaattt aattccttcc
     5041 cgcaatttca cggtgtaagt aatgccgtca tcggaaacgg tataactctc cgccagcacg
     5101 tttttcagtt tcatctcttt atccagaccg aacagcccct ggtaaaacga tttcgctacg
     5161 gcctgagata acgtgtcatt cgcgtcatac ggatcgagcg tggtgaaatt cgatcctacc
     5221 gccaccacca catctttggc agcgaatgca caagatgcca tcaacgctgt cgcaatgccc
     5281 agcgccacta acccactacg gtgtacagct cttgccattt tattctccgc ctgaatgtta
     5341 tctacgcatg aatgcgtatt ctgattgtgg ttgtgcgacg taatgccccg gcccgacgca
     5401 ttgcaacgag acggctgcca cctcttcgcc acgcagatga atattgctgg gaagatcgtc
     5461 cgacagcagt acacgctgcg gtcgttgtcg ggacggttca gcgaccggaa ctgccgccag
     5521 taatttacgc gtataaggat gctgcgggtt ttcgaagacc gcgcgccgtg gaccaatttc
     5581 aacaatttgc ccgagataca tcaccgccac acgatgacta atccgctcta ccacggccat
     5641 atcgtgggag ataaacagat acgcaatgcc gaaatcacgc tggagatcga gcaacaagtt
     5701 gataatctgc ccgcgaatag aaacatccag cgccgaaacg gcttcgtcgg caatgatcac
     5761 ttttggattc aatgccaacg cgcgagcaat gcagatgcgc tggcgctgac cgccggaaaa
     5821 ctcatgcggg taacgccagg catgttcagg taacaggccc acgcgctcca gcaaccacgc
     5881 aacgcgtgca gccgcgtctt tacctggcaa taaaccgtgt acacgcagcg gttcgataat
     5941 cgaatcaccg atggtctgac gtgggtccag cgaagcgtaa gggtcctgaa aaataaactg
     6001 aatatcccgg cgcaatgcct gaagtttgcc aggtgacaag gtatcgattc gctgaccgtt
     6061 aaagataatt tcgccgccct gcgattcgac caggcgcagc aacgcccgcc cggtagtgga
     6121 tttaccgctg ccagactcgc ccaccagcga tagcgtttcg ccaggccaga gatcaaaact
     6181 gactttctca acggcatgca cttcccgcgt tacgcgattc aacaaaccgc tgcgcaaagg
     6241 gaaacgggtg acaagattac gcactcgtaa aacaggttcg ccatccacca ccgttttctg
     6301 ctcgatgggg gggtcctgtt tcgctggatg ttcaagcgat atcaatggga aacgtcgggg
     6361 ataatctaac cctttcatcg caccaagttg cggaacagca gctaacagcg cacgggtgta
     6421 aggatgttgc ggtgcatgaa aaatctgttc gacggtaccc gtttccaccg cctcgccctg
     6481 atacatcacc agtacccgat cggctatctc tgccaccacg cccatatcgt gcgtgataaa
     6541 gataacgccc atcgacatct ctttttgcaa tactttgatt aattgcagga tctgcgcctg
     6601 aatagtgaca tccagcgcgg tggttggctc atcggcaatc agcaccgccg ggcggcatga
     6661 cagcgccatc gcaatcatca ctcgctggcg catcccgcca gagagttgat gcggataacg
     6721 tgaaagaatg gtttgtgcct caggaatgcg tacctgatcc agcatccgct tcgcctcgac
     6781 catcgcttct tcacgactgg cgttctgatg cagacgaatt gattcggcaa tctgttcacc
     6841 cacagtaaat accgggttca gcgatgtcat cggctcctga aatatcatcg ccatatccgc
     6901 accgcgaaca tggcgcattt gtgcagcgct ctgctcgcta agttcaatca cttcgcgact
     6961 gcgccgctgc aacagcattt tatcgcactg tactaaaccg cccgcctgtt ccaacaggcg
     7021 catcaatgcc aacgcagtca ctgacttacc ggagccggat tcgccaacaa ttgccagcgt
     7081 ctcaccgcgt tgcagactaa aagagagatt gcggaccgca gctattttct gctggtcctg
     7141 cataaaggca atattcagat tttcaaccgc cagcacatta ccggcatcaa gttcatcact
     7201 gtgtggcaac ggtgtcccct ttttcacggt agataccggt ggttggcgta tcgcctgcgt
     7261 agccccaggc gcgatacatt ccttcggtgt taaacggtag cgcgacattc ccttcatggc
     7321 cgatagcgat taagccaccg ctaccgccaa gcgcagggag tttttccatt actacccgct
     7381 cgcaggcttc cgcgagactt aatccgccgt aatccattaa cgcggcgatg tcatatgccg
     7441 ccagcgcgcg gatgaagact tcgcccgtgc cggtacaaga aaccgccaca ctggcgttat
     7501 tggcgtagca tccggcaccc actaagggac tatcgccaac tcgtccgggt aatttattgg
     7561 tcattccgcc tgtggacgtg gctgccgcca aattgccgtc taaatccaac gccacggccc
     7621 ccacggtgcc cattttctgt ttttcatcca gtggcgcacc gctatggtcg aggacggttg
     7681 ccccttcctt gcgcgctgcc agtagttgtt cataacgcaa aggcgtggag aaaatctccg
     7741 gcgagacgcg ctccatgcca cgagcaaacg caaaattttc tgccccttcg ccaatcatca
     7801 tcacatgcgg gctttgctcc atcaccagcc gggcggcaag aaccggatta cgcagatgac
     7861 taacgcccgc caccgcaccg gttttcaggg tgttaccatc catcatacag gcgtccagtt
     7921 catgggtttc atcacgcgta aagacagcgc caattccggc gttaaacagt ggacactctt
     7981 ccagcagacg caccgcttcc gtcaccacat ccagcgcact ttcgcccgct tccagcattt
     8041 tctgcccggt ttcaacaatg gcagacaacg cctcaatgta gcgtaattcc tgttgcagac
     8101 tcatctgcgc gcggctaatt gcacctgcgc caccatgaat tgcaatgact gctttgccca
     8161 tagtattcgt ccattaaggg tggctcgcca cttttgctat aaatatcaga atttttatga
     8221 attactcatt caatttttga atatagaaag atggatatgg catgtaaagg caggagccaa
     8281 cgctacgccc gaggtggcat acagtctgtg gcgtttttct gacataatag gcaaattcga
     8341 ttttgcctcc gcaggagtgt tttcatggaa tttaccaccg gattgatgtc gctcgacacc
     8401 gcgcttaatg agatgctttc tcgcgtcacc ccactgaccg cccaggaaac gctgccactg
     8461 gtacagtgtt ttggtcgtat tctggcgagc gatgtcgttt cgccgcttga tgttccgggg
     8521 tttgataact ccgcaatgga cggctacgcg gtgcgtttag ccgatattgc ctccgggcaa
     8581 ccgctgcccg ttgccggtaa atcctttgcc ggtcagccgt atcatggtga atggcctgcg
     8641 ggcacctgca ttcgtattat gaccggtgcg ccggtgccgg aaggctgcga agcggtggtg
     8701 atgcaggagc agactgaaca aacggacaat ggcgtgcgtt ttactgctga agtgcgtagc
     8761 gggcaaaata ttcgccgtcg cggtgaagat atctctgcag gtgcggttgt tttcccggcg
     8821 ggaactcgcc tgactaccgc agagctgcca gtaattgctt cactggggat tgccgaagtt
     8881 ccggtgattc gtaaagtgcg tgtagcgctt ttttctaccg gtgatgaact ccagttgccc
     8941 ggtcagccgc tgggcgacgg ccaaatctac gacaccaacc gtctcgccgt acacctgatg
     9001 ttagaacagc tgggttgcga ggtaatcaac ttagggatta tccgcgacga tccccatgcc
     9061 ctgcgcgccg catttattga agccgacagc caggcggatg tagtgatcag ttccggcggt
     9121 gtttcagtgg gtgaagcgga ttacaccaaa acgattcttg aagagctggg ggagatcgcc
     9181 ttctggaagc tggcgattaa accaggtaaa ccgttcgcgt tcggtaaact cagcaatagc
     9241 tggttctgcg gcctgccggg caacccggtt tcagcgacgc tgaccttcta tcaactggta
     9301 cagcctttgc tggcaaaact aagcggcaac accgccagcg gcctgcccgc gcgccagcgc
     9361 gtacgcacag cgtcccgcct gaaaaaaacg ccaggacgtc ttgatttcca gcgcggcgtg
     9421 ctgcaacgca acgccgacgg tgaacttgaa gtgacgacca ccggacatca gggttcacat
     9481 atatttagct cctttagtct cggcaactgc tttatcgtgc tggaacgcga tcgcggcaat
     9541 gtggacgtgg gcgaatgggt ggaagtagaa ccgtttaacg cgttgttcgg aggcctgtaa
     9601 tggcggaact cagcgatcag gagatgctgc gctacaaccg gcaaatcatt ctgcgcggtt
     9661 ttgattttga cggtcaggag gcgctaaaag attctcgtgt gctgatcgtc ggcctcggtg
     9721 gactcggctg cgcagcttcg cagtatctgg caagcgccgg tgtcggcaac ctgacgctgc
     9781 tcgacttcga cacggtttcg ctctcgaatc tgcaacgcca gacactgcac agtgatgcca
     9841 cggtcgggca accgaaggtg gaatccgccc gtgacgccct gacgcggatc aacccacata
     9901 tcgcgattac gccagtcaat gcactgctag atgacgcaga acttgcagca ttgattgctg
     9961 aacacgatct ggtgctcgac tgtacggata acgttgcggt acgtaatcaa ctgaacgcag
    10021 gctgttttgc cgcgaaggtg ccgctggttt ccggcgcggc aattcgtatg gaagggcaaa
    10081 tcacggtctt cacttatcag gacggcgaac cgtgctatcg ctgccttagc cgtttgtttg
    10141 gcgagaacgc gttaacctgc gtagaagcag gcgtgatggc accgttgatc ggagtaattg
    10201 gttcgttgca ggcaatggaa gcgatcaaac tgctggcagg ttatggcaaa ccggccagcg
    10261 ggaaaatcgt catgtacgat gcgatgacct gtcagtttcg cgaaatgaaa ctgatgcgta
    10321 atccggggtg tgaggtgtgc gggcagtaat tgccacctcc aagccagata agacgcggca
    10381 ctccgccacg tcatcagcaa tttatgagga tgcagaacgt ccggttaaat cgacgttctg
    10441 ccaaacgctc ccagccagtc ctgttcaaac ttcgccacag cggcatcaac cgccggatag
    10501 ctaatcatct gttgtgccac atccagtggc agcgtaattg attcacatcc tgccagtaag
    10561 cagtccagcg cctgacgcgg gtttttgaaa ctcgctgcca gcactttcgc ctgcggcgca
    10621 tgcattttca ataactggtg taagtcggtc acagtctgaa tgccgctacc gccctgagca
    10681 tcaatacgat taacgtaagg cgcaacatat tccgcacctg ccagcgccga cagcagccct
    10741 tgtgctgcgc catataccgc ggttcccagc gttggaatcc cttccgcttt taacatctta
    10801 atagctgcca gcccctcggc ggtcaccgga actttcacca cgatatccgc aataatagaa
    10861 cgcaatttac gtgcgtcatt caccatccct tcagcagtgg tagccattac ctgggcaaac
    10921 agacgcccct gaccgcccat cgcttcatga agttgcggaa gcacaacatc cagcggtttt
    10981 ttacccgcgg cgataatgct tgggttagtg gtcacacccg ccagcggaaa aatacgtgac
    11041 agcgccttca ccgcaacaac gtctgaagta tccagataca gttccataac catcctcaaa
    11101 atgtactttt tgtctgaatg tagactatca cgggaaaact ctctgaacag ttgacgcaca
    11161 tcaacccaac tttcattcga aagtatttta atgtttgaac gaaacagaga ggcaactatg
    11221 attttcaata ttcagcgcta ctcgacccat gatggccccg gtatccgcac ggtcgtattt
    11281 ctaaaaggct gttcgctggg ctgccgctgg tgtcagaacc cggaaagccg cgcccgcacg
    11341 caggatctgc tgtatgacgc acgactgtgt ctggaaggct gcgagctgtg cgctaaggca
    11401 gcgccggaag tgattgagcg cgcattgaat ggtttgctta ttcatcggga aaagttaacc
    11461 ccggagcatc tgacggcgct aaccgactgc tgcccgacac aggcgttaac cgtgtgtggg
    11521 gaagtgaaaa gcgttgagga gatcatggcg accgttctgc gcgataaacc gttttacgat
    11581 cgcagcggcg gcggcttaac gctttcgggt ggtgaaccct ttatgcagcc ggaaatagcg
    11641 acggcgctac tgcaagcctg ccacgaggca ggcattcata ctgcggtaga aacctgtctg
    11701 catgtgccgt ggaaatatat cgccccttct ctgccctata tcgatctgtt tcttgccgat
    11761 ttaaaacaca ttgccgacgc gccgtttaaa cagtggaccg acggtaacgc cgccaaggtg
    11821 ctggataacc tgaaaaaact cgccgcagcg ggcaaaaaaa tcattatccg cgtgccgctg
    11881 attcagggct ttaatgccga cgaaacctct gtaaaagcca ttaccgattt tgccgccgac
    11941 gagctgcacg ttggcgaaat tcattttctg ccctaccaca cgctgggcat caacaaatat
    12001 cacttactta atctgcccta tgacgccccg gaaaaaccgc ttgatgcgcc agacctgctc
    12061 gactttgccc agcagtatgc ctgccagaaa gggttaaccg cgaccttacg aggataacaa
    12121 ccatgaccac actgaaactg gacacgctca gcgaccgcat taaagcgcac aaaaatgcgc
    12181 tggtgcatat tgtgaaaccg ccggtctgta ccgagcgcgc gcagcactat accgagatgt
    12241 atcaacaaca tctcgataag ccgatcccgg tacgtcgcgc gctggctctg gcgcatcacc
    12301 tggcgaatcg caccatctgg atcaagcacg atgagttgat catcggcaac caggcaagcg
    12361 aggttcgcgc tgcgccgatc ttcccggaat ataccgtctc gtggatcgaa aaagagattg
    12421 atgatctggc agatcgtccc ggtgctggtt ttgcggtgag cgaagagaac aaacgcgttc
    12481 tgcatgaagt gtgcccgtgg tggcgcggtc agacggtaca ggatcgctgc tacggcatgt
    12541 ttaccgatga gcaaaaaggt ctgctggcga ccggaatcat taaagcggaa ggcaatatga
    12601 cctccggcga tgcgcacctg gcggtgaatt tcccgctgct gctggaaaaa ggtcttgatg
    12661 gtctgcgcga gaaagtagcg gaacgtcgct cgcgcatcaa tctgacggta ctggaagatt
    12721 tgcacggcga acagttcctg aaagcgattg atatcgtgct ggtggcagtc agcgaacaca
    12781 ttgaacgttt tgcagccctg gcgcgtgaaa tggccgcgac cgaaacccgc gaaagccgtc
    12841 gcgatgaact gctggcgata gcagaaaact gcgatcttat cgcccaccag ccgccgcaga
    12901 ctttctggca ggcgctgcaa ctgtgttact tcatccagtt gatattgcag atcgaatcta
    12961 acggtcactc ggtatcgttt ggtcgtatgg accagtatct ctacccgtac tatcgccgcg
    13021 acgttgaact caaccagaca ctggatcgcg aacacgccat cgaattgctg catagctgct
    13081 ggctgaaact gctggaagtg aacaagatcc gctccggctc acactcaaaa gcctctgcgg
    13141 gaagtcctct gtatcagaac gtcaccattg gcggacaaac tctggttgat ggtcaaccaa
    13201 tggacgcggt gaatccactc tcttacgcga tcctcgaatc ctgcggtcgc ctgcgttcca
    13261 ctcagcctaa cctcagcgtg cgttaccatg caggaatgag taatgatttc ctcgacgcct
    13321 gcgtacaggt gatccgttgc ggcttcggga tgccggcgtt caacaacgac gaaatcgtga
    13381 tcccggaatt tattaaactc ggtattgaac cgcaggacgc ttacgactac gcagcgattg
    13441 gttgtatcga aaccgccgtt ggtggcaaat ggggctatcg ctgtaccggc atgagcttta
    13501 tcaacttcgc ccgcgtgatg ctggcggcgc tggaaggcgg gcgtgatgcc accagcggca
    13561 acgtgttcct gccacaagaa aaagcgttgt cggcaggcaa ctttaacaat ttcgatgaag
    13621 taatggacgc gtgggatacg caaatccgtt attacacgcg taaatcaatc gaaatcgaat
    13681 atgtcgtcga caccatgctg gaagagaacg tgcacgatat tctctgctcg gcgctggtgg
    13741 atgactgtat tgagcgagcg aaaagtatca agcaaggcgg cgcgaaatat gactgggttt
    13801 ctggcctgca ggttggcatt gccaacctcg gcaacagcct ggcggcagtg aagaaactgg
    13861 tatttgaaca gggcacgatt ggtcagcaac agctggctgc cgcactggcg gatgacttcg
    13921 atggcctgac tcatgagcaa ctgcgtcagc ggctgattaa cggtgcgccg aagtacggca
    13981 acgacgatga tactgtcgat acgctgctgg ctcgcgctta tcagacctat atcgacgaac
    14041 tgaaacagta ccataatccg cgctatggtc gtggtccggt tggcggcaac tattacgcgg
    14101 gtacgtcatc tatctccgct aacgtaccgt ttggtgcgca aactatggca acgccggacg
    14161 ggcgtaaagc ccacaccccg ctggcagaag gcgctagtcc ggcctctggt actgaccatc
    14221 tcggccctac tgcggtcatt ggctcggtgg gtaaactgcc tacggcagcg attctcggcg
    14281 gcgtgttgct caaccagaaa ctgaatccgg caacgctgga gaacgaatct gacaagcaga
    14341 agctgatgat cctgctgcgc accttcttcg aggtgcataa aggctggcat attcagtaca
    14401 acatcgtttc ccgcgaaacg ctgctggagg cgaaaaaaca tccggatcag taccgcgatc
    14461 tggtagtgcg tgtcgcgggt tattccgcct tcttcaccgc gctctctcca gacgctcagg
    14521 acgatatcat cgctcgtact gaacatatgc tgtaatctct tcggcccggc tgcggcgtcg
    14581 ccgggctaaa tcattcacat catcaatttc atccttactt tcattcgaaa tataatttgt
    14641 gctctgcgtc acattgttat tacactgtta cggtttcatt ttcgagccag gagcacacct
    14701 atgagcgtaa aagttatcgt cacagacatg gacggtactt ttcttaacga cgccaaaacg
    14761 tacaaccaac cacgttttat ggcgcaatat caggaactga aaaagcgcgg cattgagttc
    14821 gttgtcgcca gcggtaatca gtattaccag cttatttcgt tctttcctga gctaaaggat
    14881 gagatctctt ttgtcgcgga aaacggcgca ctggtttacg aacatggcaa gcaactgttc
    14941 cacggcgaac tgacccgaca tgaatcgcgg attgttattg gcgagttgct aaaagataag
    15001 caactcaatt ttgtcgcctg cggtctgcaa agtgcatatg tcagcgaaaa tgcccccgaa
    15061 gcatttgtcg cactgatggc aaaacactac catcgcctga aagctgtaaa agattatcag
    15121 gagattgacg acgtactgtt caagttttcg ctcaacctgc cagatgaaca aatcccgtta
    15181 gtgatcgaca aactgcacat agcgttcgat ggcattatga aacccgtcac cagtggtttt
    15241 ggctttatcg acctgattat tcccggtcta cataaagcaa acggtatttc gcggttactg
    15301 aaacgctggg atctgtcacc gcaaaatgtg gtagcgattg gcgacagcgg taacgatgcg
    15361 gagatgctga aaatggcgcg ttattccttt gcgatgggca atgctgcgga aaacattaaa
    15421 caaatcgccc gttacgctac cgatgataat aatcatgaag gcgcgctgaa tgtgattcag
    15481 gcggtgctgg ataacacatc cccttttaac agctgacctc tctaccggag ccgtgcgctc
    15541 cggttttccc ttctttttac atcctgtaca tcacatcaaa tcattaaact tgcattaact
    15601 tatttataac ttatattgtc acatacaaat cataatggtt tcgaatgaaa gttagtgaga
    15661 ggtggttatg gcttctactt ttaccagcga cacattgcca gccgatcaca aagcagctat
    15721 ccgtcagatg aagcacgcgc tgcgggcgca gcttggcgac gtccagcaga tctttaatca
    15781 gctaagcgat gacattgcca cgcgagtggc tgaaatcaac gcactcaaag cacagggcga
    15841 tgccgtctgg ccggtgctgt cttatgccga tatcaaagca ggtcatgtta ctgcagagca
    15901 gcgcgaacag attaaacgtc gcggttgtgc ggtgataaaa ggccatttcc cccgcgaaca
    15961 agcgctaggc tgggatcagt cgatgctgga ctatctggac cgcaaccgct ttgacgaggt
    16021 ctacaaaggc cccggcgata atttcttcgg gacgctcagc gcttcacgtc ccgagattta
    16081 ccccatctac tggtcgcaga cgcaaatgca ggcccgccag agtgaagaaa tggcgaatgc
    16141 gcagtcgttt ctcaatcgtc tgtggacatt tgaaagtgat ggaaagcaat ggtttaaccc
    16201 ggatatgagc gtcatctacc ctgaccgtat ccgccgccgt ccgcccggaa cgacctccaa
    16261 aggtcttgga gcgcataccg actccggggc gctggaacgc tggctgcttc cagcgtatca
    16321 gcgcgttttc gccaacgtct ttaatggcaa tctggcgcaa tatgatccct ggcatgcggc
    16381 acatcgtacg gaagttgaag agtacacggt ggacaacacc accaaatgtt ccgtgtttcg
    16441 gacattccag ggctggacag cgctctctga tatgctgcct ggtcaggggt tgctgcacgt
    16501 tgtgcccatt cctgaagcca tggcgtacgt actgttacgt acgctgcttg atgatgtgcc
    16561 ggaggatgaa ctgtgcggcg tagcgcccgg aagagtgttg ccggtatcag agcaatggca
    16621 tccactgtta attgaggcgt taaccagcat tccaaaactc gaggccggag actccgtctg
    16681 gtggcactgc gacgtcatcc attccgttgc ccccgttgaa aatcaacagg gttggggcaa
    16741 cgtgatgtac attcctgcgg caccgatgtg caagaaaaat cttgcctacg cgcacaaggt
    16801 gaaggccgca ctggaaaaag gcgcatcgcc gggcgacttc ccgcgcgagg actatgaaac
    16861 aaactgggaa ggacgcttta cgcttgccga cctcaacatt cacggtaagc gagcgttggg
    16921 catggatgtt tgagagttaa tggaagtgaa ttgatgtggg attaagaaaa tcgattcgac
    16981 gttactcaga ttgctgacaa gtgcgctttc ttaatgcctg atgcggcgtt aacgccttat
    17041 ctggcctaca aagtcctgca gattcaatat attacaggta ctgcgtaggc ctgataagcg
    17101 tagcgcatca ggctattttg catttgtcat cagccgccgt caccccgaca gtatcggggt
    17161 gacggataat cacttactcg atccctttac tacgcaggta atcttcgtaa ttaccgctaa
    17221 agtcgatcac gcgttccggg gtgatttcca gaatgcgggt cgccagggag cttacgaact
    17281 cacggtcgtg tgaaacaaag atcagcgtgc cctgatacag ttccagcgcc atgttcagtg
    17341 actcgatgga ttccatatcc aggtggttgg tcggttcgtc catgatcaga atgttcggct
    17401 tctgcatcat taacttacca aacagcatcc gccctttttc cccaccggaa agcactttag
    17461 ctggcttttt gatgtcgtcc tggctgaaca gcaaacgacc gagaatgctg cgtaccgcct
    17521 gctcgtcatc gccttcctgc ttccactgac tcatccattc gaacacggtc agatcatttt
    17581 caaactcata ttcgtggtcc tgggcgtagt aaccaatgcg cgcgttttca gaccatttta
    17641 cggtgccgct gtccggttgc agatcgccca ccagcgtttt catcagcgtt gatttaccga
    17701 cgccgttggt acccagtacc gcaagttttt caccgacctc cagcagcagg ttgagatttt
    17761 taaacagtgg accgttatca aaccctttgg tcagaccttc cacttccagc gcgttacgga
    17821 acagtttctt atcctgttca aaacggatga acgggttctg acggctggag gctttcacct
    17881 cttccagttt gattttatca atctggcgcg cgcgcgaagt tgcctggcga gatttcgagg
    17941 cgttggcgct aaagcggcta acgaaagatt gcaactcagc aatctgcgct ttcttcttgg
    18001 cgttatcggc cagcagacgt tcacgcgcct gggtcgccgc cgtcatgtac tcatcgtagt
    18061 tacccggata aacgcgcagc tcgccgtaat ccagatccgc catgtgggta cagaccatgt
    18121 taaggaagtg acggtcgtgc gagatgatga tcatggtgct gtcacgctcg ttcagcacct
    18181 gttccagcca gcgaatggtg tcgatgtcga ggttgttggt cggttcgtcg agcaggagaa
    18241 tatccggatc agcaaacagc gcctgcgcca gaagcacacg cagcttccag ccaggagcaa
    18301 cttcactcat cgggccgtag tgctgttcca ctggaattcc cacgccaagc aacaattcac
    18361 cggcgcgagc ttccgcagag taaccgtcca tttcgccgta tttaacttcc agatcggcca
    18421 ctttatagcc gtcttcctca ctcatttccg gcaaagcata gatgcggtca cgctcctgct
    18481 tcacttccca caactcttta tgccccatga tcaccgtatc cagcacagtg aactcttcaa
    18541 aggcaaactg atcctgacgc agcttaccaa tgcgctcgtt gggatcgagg gaaacgttac
    18601 ccaaagtcgg ctctaagtcg ccgccgagga tcttcataaa ggtggattta ccactaccgt
    18661 tcgcgccaat caggccgtaa cggttgccgc cgccaaattt gacggaaatg ttttcaaaca
    18721 acggcttact gccgaactgc atggtgacgt tactggaaac taacacaggc gtatcctgaa
    18781 aagagatatg acaaaccgcg cattatgcca taagtctgaa agaagatcct gctcctcgct
    18841 taaggtctac actcaagcca aaggcaaaaa atgtgatttc gtacacatct gatttcactg
    18901 tgagctggaa tgaacttata atgcgcttcc aatactctaa tattctcaac ccaatggcct
    18961 gccaggcaca aaatctcgct taacatgaat atgaaattga aaacattatt cgcagcggcc
    19021 ttcgctgttg tcggcttttg cagtaccgcc tctgcggtaa cttatcctct gccaaccgac
    19081 gggagtcgcc tggttggtca gaatcaggtg atcaccattc ctgaaggtaa cactcagccg
    19141 ctggagtatt ttgccgcgga gtaccagatg gggctttcca atatgatgga agcgaacccg
    19201 ggtgtggata ccttcctgcc gaaaggcggt actgtactga acattccgca gcagctgatc
    19261 ctgccggata ccgttcatga aggcatcgtc attaacagtg cagagatgcg tctgtattac
    19321 tatccgaaag ggaccaacac cgttatcgtg ctgccgatcg gcattggtca gttaggcaaa
    19381 gatacgccta tcaactggac caccaaagtt gagcgtaaga aagcaggccc gacctggacg
    19441 ccgaccgcca aaatgcacgc agagtaccgc gctgcgggcg aaccgcttcc ggctgtcgtt
    19501 ccggcaggtc cggataaccc gatgggtctg tatgcactct acatcggtcg cctgtatgct
    19561 atccatggca ccaacgccaa cttcggtatc ggcctgcgtg taagtcatgg ttgtgtgcgt
    19621 ctgcgtaacg aagacatcaa attcctgttc gagaaagtac cggtcggtac ccgcgtacag
    19681 tttattgatg agccggtaaa agcgaccacc gagccagacg gcagccgtta tattgaagtc
    19741 cataacccgc tgtctaccac cgaagcccag tttgaaggtc aggaaattgt gccaattacc
    19801 ctgacgaaga gcgtgcagac agtgaccggt cagccagatg ttgaccaggt tgttcttgat
    19861 gaagcgatta aaaaccgctc cgggatgccg gttcgtctga attaatcttc aaaacttaaa
    19921 gcaaaaggcg gactcataat ccgccttttt tatttgccag accctagttg gccgggagta
    19981 taactaacaa aacatatccc accaacgccg cccacaacag catcggtatt gaatagagat
    20041 ggaaacgcca ccagatgcgg cgatcgttcg ccatacgtag cgcaatcaaa cttgccagcg
    20101 atccgggtaa taacccaaag ccacctacgt ttaccgccca tgccagtaat aaagacggcg
    20161 gcacatagtt cagcaacaat atggtactcg gcacgttact gatcacctgc gataaaccga
    20221 ttgccgttaa ccataacccg ggttcagata gatgactcac gttacccaac acgccttgca
    20281 acgctggaag ctgggtcagt aaatggacgt cgataaacat cgccataaac accagcagca
    20341 gcgtccagtc cacactgagc accacgcgac gtgccagcag cgcaaagcct gccgccacaa
    20401 tcaccagtcc ccacagctct tgtttgaact ccagcgccgt tagaaagacg atatacagcc
    20461 ccagacaact ccacaccagc cgcggtttcc actccggtgt ttgcaccccc gtatggtatt
    20521 gcagcacctt tccagggaaa caacaccagc acaggagcag gagcgtcagc atcattgcgc
    20581 cagccagcgg tgccatttgg gcaataaatc cggcaaacga aagaccagaa cgtccccaga
    20641 taagaatatt ttgcgggttg ccaattggcg tcagtagcga accagcattg actgccagcg
    20701 cctcaaaaat aatcagccga ttaaccggga tctcacacag tctttttagc gtgatagtca
    20761 gcggaacaac aataaacagc gcgacatcgt tggtcagaaa ggtagaaagc agcgccgccg
    20821 ccagcaccat aaacatcgcc agccgacgct ccgtagcaaa gcggcgcacc attttgcgcc
    20881 ccagcacatc aaaataaccg cttaactcca cacctttggt cagcagcatc aggccgctta
    20941 aggtgatgat ggtgtgccag tcgatagcag caggccagga tttcggtgca aagggcacga
    21001 aaaagcttaa tccgatacca acaagaatta ataactgaaa aaaacgatcg ccttgcagcg
    21061 tgcgtaaaaa aggcaggctc atttggcacc gtgtttctgg gtaaacaaac gaaaagcgtc
    21121 gagcgtctct tcactaacat ggtgctccat gccttccgcg tcgcgacggg cgatttccgg
    21181 actgacgccc aacaccaaca agaaattttc gactatctga tgtcgctcgc ggctttcctg
    21241 cgccagcttc tctccttctg ccgttaaaaa cacgccacgc caggggatca tttcaatcag
    21301 ccccatggtt gccagccgct taagcatttt agccaccgtc ggttgcgaaa ctcccagacg
    21361 agcagccatg tccacctgac gagcttcccc cacttccctg atcaagtcag aaatcagctc
    21421 aacgtaatca tcaataagct cgcgccgatg cgcctctctg acctggcgga acccttcaac
    21481 gtgctcttcc acgttcacta actgcgtcac tttttttgct gttggcgtac ctgcgcgacg
    21541 actcattgtg cttcctcatt atggtgacgc atacatagcg ttctcatttc gtgcgcacat
    21601 tgtaaaccag agttgcgaag gtacaaaaaa ttaacgtttt agcaatagct atataatata
    21661 gcctgtgcta tatctgtatg taatgcaatc atccctcaag gatcgacggg attagcaagt
    21721 caggaggtct tatgaatgag ttcaagaggt gtatgcgcgt gtttagtcat tctcccttta
    21781 aagtacggtt aatactgctc tctatgttgt gcgatatggt caacaacaaa ccgcagcaag
    21841 ataaaccttc cgataaatag cggcgtcgcg gtacgccgct tcactcctgc tttcatgcag
    21901 gcataacgcg ttttggtctg aaaaaaccca ctttttgtcg gatttgcaat ccccttcgca
    21961 aaagatttgt tcgtcagtag ttgacctgaa cggcggctcg ctctatcttc ttgcagccct
    22021 gcgtatattg cggctcgcgg atgcggaccc ctttccactc ttcacgcact cttgcaggta
    22081 ttgacccttg acgccagggt aagcacatgg cgtttgttac gatagtggca tatgaattta
    22141 accctcaaag aatcgcttgt tacccgtagc cgggtattta gcccgtggac tgcgttctac
    22201 tttttacagt cgctattaat taacctcggc ttaggttacc ccttcagttt gctctacacc
    22261 gctgcgttta cggctatttt gcttttgcta tggcgaacat tgcctcgcgt acaaaaagtt
    22321 ctggtcggtg tcagttcgct ggtggcggct tgttatttcc cttttgctca ggcctacggc
    22381 gcgcctaatt tcaatacatt gctggcattg cactccacca atatggaaga gtcgaccgaa
    22441 atcctgacga tttttccgtg gtacagctac ctggtcggct tatttatttt tgcgctcggc
    22501 gtaatagcaa tcaggcgaaa aaaagagaat gaaaaagcgc gctggaatac cttcgacagc
    22561 ctgtgtctgg tattcagtgt ggcgacattt tttgttgctc ccgtgcaaaa cctggcctgg
    22621 ggtggcgtat ttaaactgaa agatactggc tatccggtat ttcgttttgc taaggatgtc
    22681 atcgtcaata ataacgaggt gattgaagag caagaacgga tggcaaaact ttccggaatg
    22741 aaagatacct ggacggtcac tgccgttaag ccgaagtatc agacctatgt ggtggtgatc
    22801 ggtgaaagcg cgcgtcgcga tgccctcggt gcctttggcg gtcactggga caataccccg
    22861 tttgccagca gcgttaacgg tttgatattt gctgactaca ttgccgccag tggctccacg
    22921 cagaaatcgc ttggcttaac gctcaatcgc gtagtcgatg gcaaaccaca gtttcaggat
    22981 aactttgtca ccctggcaaa tcgcgcgggc ttccagacct ggtggttttc caaccagggc
    23041 caaatcggcg aatacgatac tgctatcgcc agcatcgcca aacgtgcaga tgaagtgtac
    23101 ttcctgaaag aaggtaattt tgaagcagat aaaaacacga aagacgaagc gttactggat
    23161 atgaccgctc aagtgctggc gcaagagcac tcgcaaccgc agctgattgt tctgcatctg
    23221 atgggctcgc atccgcaggc ctgcgacagg acacaaggca aatacgaaac ctttgtgcaa
    23281 tcgaaagaaa cgtcgtgcta tctctatacc atgacgcaaa cggacgattt actgcgcaag
    23341 ctgtacgatc agttacgcaa cagcggcagc agcttctctc tggtttactt ttctgaccac
    23401 ggtctggcct ttaaagagcg cggcaaagac gtgcaatacc ttgcccatga tgataaatat
    23461 cagcaaaatt tccaggtgcc ttttatggtc atttccagcg acgataaagc gcatcgggtg
    23521 attaaagccc gccgctcagc caatgacttc ttaggctttt tctcgcagtg gacgggaatt
    23581 aaagcgaagg aaataaatat caaatacccg tttatatctg agaagaaagc cgggccgata
    23641 tacatcacca acttccagtt acagaaggtg gattacaacc atctcggaac cgatattttc
    23701 gacccgaaac cttaaaaaca aaaatccgcc ccgagaggcg gattttttat atcaccaaag
    23761 tgattagaag cggtaaccaa caccggcaat ccaggtgcct acgtcaacgc tacgaatacg
    23821 gctctgctcg taagagaagt ccagagcaac gttttccatc gggttgaact gcagaccagc
    23881 accgtaggag aaaccgtagt cgctggtgtc gtgtttgtag gtcgggtatt cagtggtctg
    23941 gaatttacca taacccacac ccactacacc gtagatgctt gcccagtcgt taatgcggta
    24001 agccggacca gcagtgatgc cgtagtactg gtttttgttg tagtcaccag agcttgcagt
    24061 acgacttttc tcggtgtaag tgaaagaacc gatcacaccc agcgggctgt tgtcttcttc
    24121 atagcggtat ttcaggttga aaccgcccat tttgttcatt tggccctgag cgtcgctctg
    24181 tgcgtaaccg ccagttacgg tagaagtcgc agctacggaa gtacctgcgg tgaaagccag
    24241 aactgcggcc agtgctgaaa gacatgcaat ttttttcata accacctcaa atgtgattca
    24301 aataagtcct aagttttaaa tatatcaaaa attaatggga aactcttcgc gatttgtgat
    24361 gtctaacggg ccatttcatg taacagaacg tttccataca ccgctatcca tctaaattta
    24421 aatcactttt tcagagaact gcgtaagtat tacgcatgtt ttccctgtca ttcatccaga
    24481 ttattcctaa tcaccagact aatgattcca tcaatcctgg cgcattttag tcaaaacggg
    24541 ggaaaatttt ttcaacaaat gctcaaccag cattgggtat atccagtaca ctccacgctt
    24601 tacttaagtc tagatatttg tgggagaaag gatgcctggt tcattacgta aaatgccggt
    24661 ctggttacca atagtcatat tgctcgttgc catggcgtct attcagggtg gagcctcgtt
    24721 agctaagtca ctttttcctc tggtgggcgc accgggtgtc actgcgctgc gtctggcatt
    24781 aggaacgctg atcctcatcg cgttctttaa gccatggcga ctgcgctttg ccaaagagca
    24841 acggttaccg ctgttgtttt acggcgtttc gctgggtggg atgaattatc ttttttatct
    24901 ttctattcag acagtaccgc tgggtattgc ggtggcgctg gagttcaccg gaccactggc
    24961 ggtggcgctg ttctcttctc gtcgcccggt agatttcgtc tgggttgtgc tggcggttct
    25021 tggtctgtgg ttcctgctac cgctggggca agacgtttcc catgtcgatt taaccggctg
    25081 tgcgctggca ctgggggccg gggcttgttg ggctatttac attttaagtg ggcaacgcgc
    25141 aggagcggaa catggccctg cgacggtggc aattggttcg ttgattgcag cattaatttt
    25201 cgtgccaatt ggagcgcttc aggctggtga agcactctgg cactggtcgg ttattccatt
    25261 gggtctggct gtcgctattc tctcgaccgc tctgccttat tcgctggaaa tgattgccct
    25321 cacccgtttg ccaacacgga catttggtac gctgatgagc atggaaccgg cgctggctgc
    25381 cgtttccggg atgattttcc tcggagaaac actgacaccc atacagctgc tggcgctcgg
    25441 cgctatcatc gccgcttcaa tggggtctac gctgacagta cgcaaagaga gcaaaataaa
    25501 agaattagac attaattaaa tttacatttc tgcatggtta tgcataacca tgcagaattt
    25561 atcgctactt ttcctctaca ccgtctttat atatcgaatt atgcaaaagc atatttattc
    25621 cgaaaattcc tggcgagcag ataaataaga attgttctta tcaatatatc taactcattg
    25681 aatctttatt agttttgttt ttcacgcttg ttaccactat tagtgtgata ggaacagcca
    25741 gaatagcgga acacatagcc ggtgctatac ttagtctcgt taattactgg gacataacat
    25801 caagaggata tgaaattatg agtaccgcta aattagttaa atcaaaagcg accaatctgc
    25861 tttatacccg caacgatgtc tccgacagcg agaaaaaagc aacagtagag ttgctgaatc
    25921 gccaggttat ccagtttatt gatctttctt tgattaccaa acaagcgcac tggaacatgc
    25981 gcggcgctaa cttcattgcc gtacatgaaa tgctggatgg cttccgcacc gcactgatcg
    26041 atcatctgga taccatggca gaacgtgcag tgcagctggg cggtgtagct ctggggacca
    26101 ctcaagttat caacagcaaa accccgctga aaagttaccc gctggacatc cacaacgttc
    26161 aggatcacct gaaagaactg gctgaccgtt acgcaatcgt cgctaatgac gtacgcaaag
    26221 cgattggcga agcgaaagat gacgacaccg cagatatcct gaccgccgcg tctcgcgacc
    26281 tggataaatt cctgtggttt atcgagtcta acatcgaata aatccatcgc tgatggtgca
    26341 gaactttagt acccgataaa agcggcttcc tgacaggagg ccgttttgtt ttgcagccca
    26401 cctcaacgca cttatttagt gcatccatct gctatctcca gctgattaag taaatttttt
    26461 gtatccacat catcacacaa tcgttacata aagattgttt tttcatcagg ttttacgcta
    26521 aataatcact gtgttgagtg cacaatttta gcgcaccaga ttggtgcccc agaatggtgc
    26581 atcttcaggg tattgcccta taaatcgtgc atcacgtttt tgccgcatct ctaaaaatca
    26641 atgagttgca aaactggcac gattttttca tatatgtgaa tgtcacgcag gggatcgtcc
    26701 cgtggataga aaaaaggaaa tgctatgaag tctgtattaa aagtttcact ggctgcactg
    26761 accctggttt ttgcggtttc ttctcatgcc gcggataaaa aattagttgt cgcgacggat
    26821 accgccttcg ttccgtttga atttaaacag ggcgataaat atgtgggctt tgacgttgat
    26881 ctgtgggctg ccatcgctaa agagctgaag ctggattacg aactgaagcc gatggatttc
    26941 agtgggatca ttccggcact gcaaaccaaa aacgtcgatc tggcgctggc gggcattacc
    27001 atcaccgacg agcgtaaaaa agcgatcgat ttctctgacg gctactacaa aagcggcctg
    27061 ttagtgatgg tgaaagctaa caataacgat gtgaaaagcg tgaaagatct cgacgggaaa
    27121 gtggttgctg tgaagagcgg tactggctcc gttgattacg cgaaagcaaa catcaaaact
    27181 aaagatctgc gtcagttccc gaacatcgat aacgcctata tggaactggg caccaaccgc
    27241 gcagacgccg ttctgcacga tacgccaaac attctgtact tcatcaaaac cgccggtaac
    27301 ggtcagttca aagcggtagg tgactctctg gaagcgcagc aatacggtat tgcgttcccg
    27361 aaaggttgcg acgagctgcg tgacaaagtc aacggcgcgt tgaaaaccct gcgcgagaac
    27421 ggaacttaca acgaaatcta caaaaaatgg ttcggtactg aaccgaaata ataacgctac
    27481 acctgtaaag cgcactggca gttccctctc ccctctgggg agaggattag ggtgaggggc
    27541 gcaaacccgc tccggggcca ttaattaccc tgaatttgat tatttacacc acggtaacag
    27601 gaacaacata tgcagtttga ctggagtgcc atctggcctg ccattccgct tctgattgaa
    27661 ggtgccaaaa tgaccctgtg gatttcggtc ctcggtctgg ctggcggtct ggtaatcgga
    27721 ttgctggcag gttttgcacg caccttcggt ggttggatag ccaaccacgt cgcgctggtc
    27781 tttattgaag tgatccgcgg cacacctatc gtcgtccagg tgatgtttat ctatttcgcc
    27841 ctgccgatgg cgtttaacga cttacgcatc gacccattta ctgcggcggt ggtcaccatc
    27901 atgatcaact ccggcgcgta cattgcggaa atcacgcgtg gtgcggtgct gtctattcac
    27961 aaaggttttc gtgaagcagg actggcgctc ggtctttcac gttgggaaac cattcgctac
    28021 atcattttac cgctggcact gcgtcgtatg ctgccgccgc tgggtaacca gtggatcatc
    28081 agcattaaag acacctcgct gtttattgtt atcggcgtgg cggaactgac ccgtcagggg
    28141 caagaaatta ttgccggtaa cttccgcgcc cttgagatct ggagcgccgt ggcggtgttc
    28201 tatctgatta ttaccctggt gctgagcttt attctgcgtc gtctggaaag aaggatgaaa
    28261 atcctgtgat tgaatttaaa aacgtctcca agcactttgg cccaacccag gtgctgcaca
    28321 atatcgattt gaacattgcc cagggcgaag tcgtggtgat tatcgggccg tccggttccg
    28381 gtaaatcgac cctgctgcgc tgcatcaaca aactggaaga aatcacctcc ggcgatctga
    28441 ttgtcgatgg cctgaaggtt aacgatccga aagttgacga gcgcctgatt cgccaggaag
    28501 caggtatggt gttccagcag ttttacctct tcccgcatct gacggcgctg gaaaacgtca
    28561 tgtttggtcc gctacgcgtg cgtggcgcga acaaagaaga ggcggaaaaa ctggcgcgtg
    28621 agctgctggc gaaagtcggt ctggcagaac gtgcacatca ctacccttcc gaactttctg
    28681 gtggtcaaca gcagcgtgtg gcgattgccc gcgcgctggc ggtgaagccg aaaatgatgc
    28741 tgtttgatga accgacttcc gctcttgacc cggaactgcg ccatgaagtg ctgaaggtta
    28801 tgcaggatct ggctgaagaa gggatgacga tggtgatcgt gacccacgaa atcggttttg
    28861 ccgagaaagt agcttcgcgg ctgatcttta tcgacaaagg ccggattgcg gaagatggca
    28921 atccgcaggt gttgatcaag aacccgccga gccagcgctt gcaggaattt ttgcagcacg
    28981 tctcttaata agacacattg cctgatgcgc tacgcttatc aggcctacag gatatctggc
    29041 aacttattaa aattgcatga acttgtagga cggataaggc gttcacgccg catccggcaa
    29101 aaaagcccgc acgttgtcag caatctgctt aatatccctt cctccctttc acccgaaagg
    29161 gaggcacacc agattcctct catttaaaat c
//
LOCUS       DADMHM010000035        29145 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.036, whole genome shotgun sequence.
ACCESSION   DADMHM010000035 DADMHM010000000
VERSION     DADMHM010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 29145)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29145)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29145
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.036"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..527)
                     /gene="acpT"
                     /locus_tag="JN125_001304"
     CDS             complement(<1..527)
                     /gene="acpT"
                     /locus_tag="JN125_001304"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4'-phosphopantetheinyl transferase AcpT"
                     /protein_id="HAY8871137.1"
                     /translation="MYRIVLGKVSTLSAAPLPPGLREQAPQGPRRERWLAGRALLSHT
                     LSPLPEIIYGEQGKPAFAPETPLWFNLSHSGDDIALLLSDEGEVGCDIEVIRPRANWR
                     WLANAVFSLGEHAEMDAVHPDQQLEMFWRIWTRKEAIVKQRGGSAWQIVSVDSTYHSS
                     LSVSHCQLENLSLAI"
     gene            complement(582..1631)
                     /locus_tag="JN125_001305"
     CDS             complement(582..1631)
                     /locus_tag="JN125_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HAY8871138.1"
                     /translation="METPQPDKTGMHILLKLASLVVILAGIHAAADIIVQLLLALFFA
                     IVLNPLVTWFIRRGVQRPVAITIVVVVMLIALTALVGVLAASFNEFISMLPKFNKELT
                     RKLFKLQEMLPFLNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVF
                     MLFEVRHVPYKMRFALNNPQIHIAGLHRALKGVSHYLALKTLLSLWTGVIVWLGLALM
                     GVQFALMWAVLAFLLNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIG
                     NILEPRMMGHRLGMSTMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKIWMETTKGGSKL
                     AILLGPGRPKSRLPG"
     gene            1763..2980
                     /locus_tag="JN125_001306"
     CDS             1763..2980
                     /locus_tag="JN125_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417930.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8871139.1"
                     /translation="MPEPVAEPALNGLRLNLRIVSIVMFNFASYLTIGLPLAVLPGYV
                     HDVMGFSAFWAGLVISLQYFATLLSRPHAGRYADLLGPKKIVVFGLCGCFLSGLGYLT
                     AGLTASLPVISLLLLCLGRVILGIGQSFAGTGSTLWGVGVVGSLHIGRVISWNGIVTY
                     GAMAMGAPLGVVFYHWGGLQALALIIMGVALVAILLAIPRPTVKASKGKPLPFRAVLG
                     RVWLYGMALALASAGFGVIATFITLFYDAKSWDGAAFALTLFSCAFVGTRLLFPNGIN
                     RIGGLNVAMICFSVEIIGLLLVGVATMPWMAKIGVLLAGAGFSLVFPALGVVAVKAVP
                     QQNQGAALATYTVFMDLSLGVTGPLAGLVMSWAGVPVIYLAAAGLVAIALLLTWRLKK
                     RPPEHVPEAASSS"
     gene            complement(2984..3541)
                     /gene="dcrB"
                     /locus_tag="JN125_001307"
     CDS             complement(2984..3541)
                     /gene="dcrB"
                     /locus_tag="JN125_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417929.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage sensitivity protein DcrB"
                     /protein_id="HAY8871140.1"
                     /translation="MRNLVKYVGIGLLVMGLAACDDKDTNATAQGSVAESNATGNPVN
                     LLDGKLSFSLPADMTDQSGKLGTQANNMHVWSDATGQKAVIVIMGDDPKEDLAVLAKR
                     LEDQQRSRDPQLQVVTNKAIELKGHKMQQLDSIISAKGQTAYSSVILGNVGNQLLTMQ
                     ITLPADDQQKAQTTAENIINTLVIQ"
     gene            complement(3614..4279)
                     /locus_tag="JN125_001308"
     CDS             complement(3614..4279)
                     /locus_tag="JN125_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine/7-aminomethyl-7-
                     deazaguanine transporter"
                     /protein_id="HAY8871141.1"
                     /translation="MNVFSQTQRYKALFWLSLFHLLVITSSNYLVQLPVSILGFHTTW
                     GAFSFPFIFLATDLTVRIFGAPLARRIIFAVMIPALLISYVISSLFYMGSWQGFGALA
                     HFNLFVARIATASFMAYALGQILDVHVFNRLRQSRRWWLAPTASTLFGNVSDTLAFFF
                     IAFWRSPDAFMAEHWMEIALVDYCFKVLISIVFFLPMYGVLLNMLLKRLADKSEINAL
                     QAS"
     gene            4500..4745
                     /gene="tusA"
                     /locus_tag="JN125_001309"
     CDS             4500..4745
                     /gene="tusA"
                     /locus_tag="JN125_001309"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA"
                     /protein_id="HAY8871142.1"
                     /translation="MTDLFSSPDHTLDALGLRCPEPVMMVRKTVRNMQPGETLLIIAD
                     DPATTRDIPGFCTFMEHELVAKETDGLPYRYLIRKGG"
     gene            complement(4847..7045)
                     /gene="zntA"
                     /locus_tag="JN125_001310"
     CDS             complement(4847..7045)
                     /gene="zntA"
                     /locus_tag="JN125_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase
                     ZntA"
                     /protein_id="HAY8871143.1"
                     /translation="MSTPDNHGKKAPQFAAFKPLTTVQNANDCCCDGACSSSPTLSEN
                     VSGTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVES
                     AVQKAGYSLRDEQAADEPQASRLKENLPLITLIVMMAISWGLEQFNHPFGQLAFIATT
                     LVGLYPIAHQALRLIKSGSYFAIETLMSVAAIGALFIGATAEAAMVLLLFLIGERLEG
                     WAASRARQGVSALMALKPETATRLRNGEREEVAINSLRPGDVIEVAAGGRLPADGKLL
                     SPFASFDESALTGESIPVERATGDKVPAGATSVDRLVTLEVLSEPGASAIDRILKLIE
                     EAEERRAPIERFIDRFSRIYTPAIMAVALLVTLVPPLLFAASWQEWIYKGLTLLLIGC
                     PCALVISTPAAITSGLAAAARRGALIKGGAALEQLGRVTQVAFDKTGTLTVGKPRVTA
                     IHPATGISESELLTLAAAVEQSATHPLAQAIVREAQVAALAIPAAESQRALVGSGIEA
                     QVNGERVLICAAGKHPADAFAGLINELESAGQTVVLVVRNDDVLGIIALQDTLRADAA
                     TAISELNALGVKGVILTGDNPRAAAAIAGELGLEFKAGLLPEDKVKAVTELNQHAPLA
                     MVGDGINDAPAMKAAAIGIAMGSGTDVALETADAALTHNHLRGLVQMIELARATHANI
                     RQNITIALGLKGIFLVTTLLGMTGLWLAVLADTGATVLVTANALRLLRRR"
     gene            complement(7119..7745)
                     /locus_tag="JN125_001311"
     CDS             complement(7119..7745)
                     /locus_tag="JN125_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysoplasmalogenase"
                     /protein_id="HAY8871144.1"
                     /translation="MLWSFIAVCLSAWLSVDASYRGPTWQRWVFKPLTLLLLLLLAWQ
                     APMFDAISYLVLAGLCASLLGDALTLLPRQRLMYAIGAFFLSHLLYTIYFASQMTLSF
                     FWPLPLVLLVLGALLLAIIWTRLEEYRWPICTFIGMTLVMVWLAGELWFFRPTAPALS
                     AFVGASLLFISNFVWLGSHYRRRFRADNAIAAACYFAGHFLIVRSLYL"
     gene            7886..8245
                     /locus_tag="JN125_001312"
     CDS             7886..8245
                     /locus_tag="JN125_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2500 domain-containing protein"
                     /protein_id="HAY8871145.1"
                     /translation="MSKPPLFFIVIIGLIVVAASFRFMQQRREKADNDMAPLQQKLVV
                     VSNKREKPINDRRSRQQEVTPAGASMRYEASFKPQSGGMEQTFRLDAQQYHALTVGDK
                     GTLSYKGTRFVSFVGEQ"
     gene            complement(8248..8517)
                     /locus_tag="JN125_001313"
     CDS             complement(8248..8517)
                     /locus_tag="JN125_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1145 family protein"
                     /protein_id="HAY8871146.1"
                     /translation="MLINIGRLLMLCVWGFLILNLVHPFPRPLNIFVNVALIFTVLMH
                     GMQLALLKSTLPKDGPQMTTAEKVRIFLFGVFELLVWQKKFKVKK"
     gene            complement(8507..9103)
                     /gene="rsmD"
                     /locus_tag="JN125_001314"
     CDS             complement(8507..9103)
                     /gene="rsmD"
                     /locus_tag="JN125_001314"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase"
                     /protein_id="HAY8871147.1"
                     /translation="MKKTNHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLF
                     NWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGN
                     ARVVNSNAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEV
                     ENGLPTVPANWSLHREKVAGQVAYRLYQREAQGESDAD"
     gene            9253..10746
                     /gene="ftsY"
                     /locus_tag="JN125_001315"
     CDS             9253..10746
                     /gene="ftsY"
                     /locus_tag="JN125_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HAY8871148.1"
                     /translation="MAKEKKRGFFSWLGFGQKEQTPEKETEVQNEQPVVEEIVQAQEP
                     AKASEQAVEEQPQAHTEAEAETFAADVVEVTEQVAESEKAQPEAEVVAQPEPVVEETP
                     EPVAIEREELPLPEDVNAEEVSPEEWQAEAETVEIVEAAEEEAAKEEITDEELEAQAL
                     AAEAAEEAVMVVPPVEEQPVEEIAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLF
                     RGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMG
                     EILAKVDEPLNVEGKTPFVILMVGVNGVGKTTTIGKLARQFELQGKSVMLAAGDTFRA
                     AAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKSH
                     LMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDG
                     TAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARED"
     gene            10749..11417
                     /gene="ftsE"
                     /locus_tag="JN125_001316"
     CDS             10749..11417
                     /gene="ftsE"
                     /locus_tag="JN125_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HAY8871149.1"
                     /translation="MIRFEHVSKAYLGGRQALQGVTFHMQPGEMAFLTGHSGAGKSTL
                     LKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAI
                     PLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL
                     ADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDINLISRRSYRMLTLSDGHLHGG
                     VGHE"
     gene            11410..12468
                     /gene="ftsX"
                     /locus_tag="JN125_001317"
     CDS             11410..12468
                     /gene="ftsX"
                     /locus_tag="JN125_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsX"
                     /protein_id="HAY8871150.1"
                     /translation="MNKRDAINHIRQFGGRLDRFRKSVGGSGDGGRNAPKRAKSSPKP
                     VNRKTNVFNEQVRYAFHGALQDLKSKPFATFLTVMVIAISLTLPSVCYMVYKNVNQAA
                     TQYYPSPQITVYLQKTLDDDAAAGVVAQLQAEQGVEKVNYLSREDALGEFRNWSGFGG
                     ALDMLEENPLPAVAVVIPKLDFQGTESLNTLRDRITQINGIDEVRMDDSWFARLAALT
                     GLVGRVSAMIGVLMVAAVFLVIGNSVRLSIFARRDSINVQKLIGATDGFILRPFLYGG
                     ALLGFSGALLSLILSEILVLRLSSAVAEVAQVFGTNFDINGLSFDECLLLLLVCSMIG
                     WVAAWLATVQHLRHFTPE"
     gene            12713..13567
                     /gene="rpoH"
                     /locus_tag="JN125_001318"
     CDS             12713..13567
                     /gene="rpoH"
                     /locus_tag="JN125_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007899894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoH"
                     /protein_id="HAY8871151.1"
                     /translation="MTDKMQSLALAPVGNLDSYIRAANAWPMLSADEERALAEKLHYH
                     GDLEAAKTLILSHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLV
                     SFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARE
                     LGVTSKDVREMESRMAAQDMTFDLSSDDDSDSQPMAPVLYLQDKSSNFADGIEDDNWE
                     EQAANRLTDAMQGLDERSQDIIRARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMK
                     KLRAAIEA"
     gene            13838..14941
                     /locus_tag="JN125_001319"
     CDS             13838..14941
                     /locus_tag="JN125_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HAY8871152.1"
                     /translation="MNIKGKALLAGCIALAFSNMALAEDIKVAVVGAMSGPVAQYGDQ
                     EFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCS
                     SSTQPASDIYEDEGILMITPAATSPELTARGYQLILRTTGLDSDQGPTAAKYILEKVK
                     PQRIAIVHDKQQYGEGLARAVQDGLKKGNANVVFFDGITAGEKDFSTLVARLKKENID
                     FVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLSNIAGESAEGLLVTKPKNYD
                     QVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLNQSDDPAEIAKYLKANSVDT
                     VMGPLTWDEKGDLKGFEFGVFDWHANGTATDAK"
     gene            complement(15140..15523)
                     /gene="panM"
                     /locus_tag="JN125_001320"
     CDS             complement(15140..15523)
                     /gene="panM"
                     /locus_tag="JN125_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase autocleavage activator
                     PanM"
                     /protein_id="HAY8871153.1"
                     /translation="MTLTIIRLENFSDQDRIDLQKIWPEYSPSSLQVDDNHRIYAARF
                     NERLLAAVRVTLSGTEGALDSLRVREVTRRRGVGQYLLEEVLRNNPGVSCWWMADAGV
                     EDRGVMTAFMQALGFTAQQGGWEKR"
     gene            15947..17056
                     /gene="livk"
                     /locus_tag="JN125_001321"
     CDS             15947..17056
                     /gene="livk"
                     /locus_tag="JN125_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter substrate-binding protein LivK"
                     /protein_id="HAY8871154.1"
                     /translation="MKRNAKTIIAGMIALAISHTAMADDIKVAVVGAMSGPIAQWGDM
                     EFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCS
                     SSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVK
                     PQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKENID
                     FVYYGGYYPEMGQMLRQARSVGLKTQFMGPEGVGNASLSNIAGDAAEGMLVTMPKRYD
                     QDPANQGIVDALKADKKDPSGPYVWITYAAVQSLATALERTGSDEPLALVKDLKANGA
                     NTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTAAK"
     gene            17104..18030
                     /gene="livH"
                     /locus_tag="JN125_001322"
     CDS             17104..18030
                     /gene="livH"
                     /locus_tag="JN125_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010436488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter permease LivH"
                     /protein_id="HAY8871155.1"
                     /translation="MSEQFLYFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHG
                     EVYMIGSYVSFMIIAALMMMGIDTGWLLVAAGFVGAIVIASAYGWSIERVAYRPVRNS
                     KRLIALISAIGMSIFLQNYVSLTEGSRDVALPSLFNGQWVVGHSENFSASITTMQAVI
                     WIVTFLAMLALTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAV
                     AGVLLGQFYGVINPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLILGIAEALSSAYLS
                     TEYKDVVSFALLILVLLVMPTGILGRPEVEKV"
     gene            18027..19304
                     /locus_tag="JN125_001323"
     CDS             18027..19304
                     /locus_tag="JN125_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter permease LivM"
                     /protein_id="HAY8871156.1"
                     /translation="MKPMHIAMALLSAAMFFVLAGVFMGVQLELDGTKLVVDTASDIR
                     WQWVFIGTAVVFFFQLLRPAFQKGLKSVSGPKFILPAIDGSTVKQKLFLVALLVLAVA
                     WPFMVSRGTVDIATLTMIYIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYY
                     GLGFWTCLPIAGLMAAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGG
                     PNGISQIPKPTFFGLEFSRTAREGGWDTFSNFFGLKYDPSDRVIFLYLVALLLVVLSL
                     FVINRLLRMPLGRAWEALREDEIACRSLGLSPRRIKLTAFTISAAFAGFAGTLFAARQ
                     GFVSPESFTFAESAFVLAIVVLGGMGSQFAVILAAILLVVSRELMRDFNEYSMLMLGG
                     LMVLMMIWRPQGLLPMTRPQLKLKNGAAKGEQA"
     gene            19301..20068
                     /gene="livG"
                     /locus_tag="JN125_001324"
     CDS             19301..20068
                     /gene="livG"
                     /locus_tag="JN125_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000084170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter ATP-binding protein LivG"
                     /protein_id="HAY8871157.1"
                     /translation="MSQPLLSVNGLMMRFGGLLAVNNVNLELYPQEIVSLIGPNGAGK
                     TTVFNCLTGFYKPTGGTILLRDQHLEGLPGQQIARMGVVRTFQHVRLFREMTVIENLL
                     VAQHQQLKTGLFSGLLKTPSFRRAQSEALDRAATWLERIGLLEHANRQASNLAYGDQR
                     RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNHHNTTILLIEHDMKLVM
                     GISDRIYVVNQGTPLANGTPEQIRNNPDVIRAYLGEA"
     gene            20070..20783
                     /gene="livF"
                     /locus_tag="JN125_001325"
     CDS             20070..20783
                     /gene="livF"
                     /locus_tag="JN125_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312328.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high-affinity branched-chain amino acid ABC
                     transporter ATP-binding protein LivF"
                     /protein_id="HAY8871158.1"
                     /translation="MEKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGK
                     TTLLGTLCGDPRAASGRIVFDDKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLA
                     MGGFFAERDQFQERIKWVYELFPRLHERRVQRAGTMSGGEQQMLAIGRALMSNPRLLL
                     LDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLS
                     DTGDALLANEAVRSAYLGG"
     gene            21180..22496
                     /gene="ugpB"
                     /locus_tag="JN125_001326"
     CDS             21180..22496
                     /gene="ugpB"
                     /locus_tag="JN125_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     substrate-binding protein UgpB"
                     /protein_id="HAY8871159.1"
                     /translation="MKPLHYTASALALGLALMGNAQAVTTIPFWHSMEGELGKEVDSL
                     AQRFNAENPDYKIVPTYKGNYEQNLSAGIAAFRTGNAPAILQVYEVGTATMMASKAIK
                     PVYDVFKEAGIQFDESQFVPTVSGYYSDSKTGHLLSQPFNSSTPVLYYNKDAFKKAGL
                     DPEQPPKTWQDLADYAAKLKASGMKCGYASGWQGWIQLENFSAWNGLPFASKNNGFDG
                     TDAVLEFNKPEQVKHIAMLEEMNKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLAN
                     IREYAKFNYGVGMMPYDGDAKDAPQNAIIGGASLWVMQGKDKETYTGVAKFLDFLAKP
                     ENAAEWHQKTGYLPITKAAYDLTREQGFYEKNPGADTATRQMLNKPPLPFTKGLRLGN
                     MPQIRVIVDEELESVWTGKKTPQQALDTAVERGNQLLRRFEKSTKS"
     gene            22594..23481
                     /gene="ugpA"
                     /locus_tag="JN125_001327"
     CDS             22594..23481
                     /gene="ugpA"
                     /locus_tag="JN125_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000099274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter permease
                     UgpA"
                     /protein_id="HAY8871160.1"
                     /translation="MSSSRPVFRSRWLPYLLVAPQLIITVIFFIWPAGEALWYSLQSV
                     DPFGFSSQFVGLDNFVTLFHDSYYLDSFWTTIKFSTFVTVSGLLVSLFFAALVEYIVR
                     GSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFL
                     VVFASVWKQISYNFLFFYAALHSIPRSLIEAAAIDGAGPIRRFFKIALPLIAPVSFFL
                     LVVNLVYAFFDTFPVIDAATSGGPVQATTTLIYKIYREGFTGLDLASSAAQSVVLMFL
                     VIVLTVVQFRYVESKVRYQ"
     gene            23478..24323
                     /gene="ugpE"
                     /locus_tag="JN125_001328"
     CDS             23478..24323
                     /gene="ugpE"
                     /locus_tag="JN125_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000572177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter permease
                     UgpE"
                     /protein_id="HAY8871161.1"
                     /translation="MIENRPWLTIFSHTMLILGIAVILFPLYVAFVAATLDKQAVYAA
                     PMTLIPGTHLLENIHNIWVNGVGTNSAPFWRMLLNSFVMAFSITLGKITVSMLSAFAI
                     VWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATATF
                     LFRQFFMTLPDELVEAARIDGASPMRFFCDIVFPLSKTNLAALFVITFIYGWNQYLWP
                     LLIITDVDLGTTVAGIKGMIATGEGTTEWNSVMAAMLLTLIPPVVIVLVMQRAFVRGL
                     VDSEK"
     gene            24325..25395
                     /locus_tag="JN125_001329"
     CDS             24325..25395
                     /locus_tag="JN125_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417907.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate import ATP-binding
                     protein UgpC"
                     /protein_id="HAY8871162.1"
                     /translation="MAGLKLQAVTKSWDGKTQVIKPLTLDVADGEFIVMVGPSGCGKS
                     TLLRMVAGLERVTEGDIWINDQRVTEMEPKDRGIAMVFQNYALYPHMSVEENMAWGLK
                     IRGMGKQQIAERVKEAARILVLDGLLKRRPRELSGGQRQRVAMGRAIVRDPAVFLFDE
                     PLSNLDAKLRVQMRLELQQLHRRLKTTSLYVTHDQVEAMTLAQRVMVMNGGVAEQIGT
                     PVEVYEKPASLFVASFIGSPAMNLLTGRVNNEGTHFELDGGIELPLNGGYRQYAGRKM
                     TLGIRPEHIVLSSQAEGGVPLVMDTLEILGADNLAHGRWGEQKLVVRLAHQERPTAGS
                     TLWLHLAENQLHLFDGETGQRV"
     gene            25392..26135
                     /gene="ugpQ"
                     /locus_tag="JN125_001330"
     CDS             25392..26135
                     /gene="ugpQ"
                     /locus_tag="JN125_001330"
                     /EC_number="3.1.4.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HAY8871163.1"
                     /translation="MSNWPYPRIVAHRGGGKLAPENTLAAIDVGAKYGHKMIEFDAKL
                     SKDGEIFLLHDDNLERTSNGWGVAGELNWQDLLRVDAGSWYSKAFKGEPLPLLSQVAE
                     RCREHGMMANIEIKPTTGTGPLTGKMVALAARQLWAGMTPPLLSSFEIDALEAAQLAA
                     PELPRGLLLDEWRDDWRELTARLGCVSIHLNHKLLDKARVMQLKDAGLRILVYTVNKP
                     QRAAELLRWGVDCICTDAIDVIGPNFTAQ"
     gene            complement(26122..26562)
                     /locus_tag="JN125_001331"
     CDS             complement(26122..26562)
                     /locus_tag="JN125_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2756 family protein"
                     /protein_id="HAY8871164.1"
                     /translation="MKRLLILTALLPFVGFAQPINTLNNPNQPGYQIPSQQRMQTQMQ
                     TQQIQQKGMLNQQLKTQTQLQQQHLENQINNNSQRVLQSQPGERNPARQQMLPNTNGG
                     MLNSNRNPDSSLNQQHMLPERRNGDMLNQPSTPQPDIPLKTIGP"
     gene            26682..28415
                     /gene="ggt"
                     /locus_tag="JN125_001332"
     CDS             26682..28415
                     /gene="ggt"
                     /locus_tag="JN125_001332"
                     /EC_number="2.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyltransferase"
                     /protein_id="HAY8871165.1"
                     /translation="MIKPTFLRRVAIAALLSGSCFSAVAAPPVSYGVEEDIFHPVRAK
                     QGMVASVDATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIRSKN
                     GNTTAIDFREMAPAKATRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDKYGT
                     MPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKKGDK
                     LVQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGGLITKEDLAAYKAVERTPIS
                     GDYRGYQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADAMQIMAEAEKYAYADR
                     SEYLGDPDFVKVPWQALTNKAYAKSIADQIDINKAKPSSEIRPGKLAPYESNQTTHYS
                     VVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGVPNVYGLVGGDANA
                     VGPNKRPLSSMSPTIVVKDGKTWLVTGSPGGSRIITTVLQMVVNSIDYGMNVAEATNA
                     PRFHHQWLPDELRVEKGFSPDTLKLLEAKGQKVALKEAMGSTQSIMVGPDGELYGASD
                     PRSVDDLTAGY"
     gene            complement(28453..28737)
                     /locus_tag="JN125_001333"
     CDS             complement(28453..28737)
                     /locus_tag="JN125_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871166.1"
                     /translation="MITYHDAFAKANHYLDDADLPVVITLHGRFSQGWYFCFEAREFL
                     ETGDEAARLAGNAPFIIDKDSGEIHSLGTAKPLEEYLQDYEIKKATFGLP"
     gene            complement(28937..29092)
                     /locus_tag="JN125_001334"
     CDS             complement(28937..29092)
                     /locus_tag="JN125_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871167.1"
                     /translation="MEKLTTELHSLSEMDRRHVVSILAEIANGYDDFNDILIYLEFYP
                     NHKILIS"
BASE COUNT         6810 a         7443 c         8080 g         6812 t
ORIGIN      
        1 cagatcgcaa ggcttaaatt ttctagctga caatggctga ctgacagcga ggagtgatag
       61 gtgctatcta cgctgacgat ttgccaggcg ctgccgccac gctgtttaac gatggcttct
      121 ttgcgcgtcc agatgcgcca gaacatttcc agttgctgat caggatgcac ggcgtccatt
      181 tcagcgtgtt ccccgaggct gaacacggcg ttcgccagcc agcgccagtt ggcgcgcggg
      241 cgaatcactt cgatatcgca gccgacttcg ccttcatcgc tcaacagcag agcgatatcg
      301 tcaccgctat ggcttaagtt gaaccatagc ggcgtttccg gcgcgaatgc aggtttgcct
      361 tgttcgccat agatgatctc cggtagcggg gaaagcgtgt gcgaaagcaa tgcacgcccc
      421 gccagccagc gttcgcgtcg tggaccttgc ggtgcttgct cgcgtaaacc cggtggcagt
      481 ggagctgcgc ttaaggtcga aactttcccc agaactatcc gatacatatc agggccaacg
      541 tttaatggaa aatgaaagtg cgtatcgtat cacttgtcgc ctcatcccgg taaccgactt
      601 ttcggtctgc ctggccccag taaaatcgcc agtttgctac cgcctttggt ggtttccatc
      661 cagattttac acacgctggt taatggcacc gaaagtagca tccctaccgg gccgagcagc
      721 catccccaaa ttaacaatga aagaaatacc accatggtgg acatccccag gcgatggccc
      781 atcatccgtg gttctaaaat attgccgatg accatatgga ccactaaaaa caatgcgccg
      841 accagaatac attcgtaaac accattaaac agcagcacct gaatcattgg cggtacggcg
      901 gaaattaccg cgccgatatt gggcacgtag ttgagcaaaa acgccagtac tgcccacatc
      961 agcgcaaact gtacgcccat tagcgccagc cccagccaga cgatgacacc tgtccataaa
     1021 ctgagtagcg tctttaacgc cagataatgc gaaacgcctt taagtgcgcg gtgtaatcct
     1081 gcgatgtgaa tctgtgggtt attcagcgca aaacgcattt tgtaagggac gtggcgcact
     1141 tcaaacagca taaaaactac ggtcatcacc agcaaaagca cgctcgccat tgccccggaa
     1201 agcccggtca ttagcgctgt ggtgaaggta accacttttt ccgagtccat ccgctgcagc
     1261 attcgctccg gcgacatatg caaattaaga aaaggcaaca tctcctgcaa tttaaaaagt
     1321 ttgcgcgtca gctccttatt aaacttcggc agcatagaga taaattcgtt aaacgatgcc
     1381 gccagtacgc cgaccagcgc ggttagtgcg atcagcatca ccaccactac aatcgtaatg
     1441 gcaacggggc gttgtactcc ccgacgaata aaccaggtaa cgagcgggtt gaggacgatg
     1501 gcaaaaaaca gcgccagtaa cagctgcaca atgatatctg ccgctgcgtg aatgcccgcg
     1561 aggatcacta ccagcgaggc caacttgagc agaatgtgca tgcccgtttt atcgggttga
     1621 ggggtttcca ttggggcttc cttgtgactt tttgtgttaa gtgtagcggg agtcacgcca
     1681 gcaatattct gattcttact gctgattttc acgtcagcac gtggtaaaaa tgaaacactg
     1741 ttgtaaaaat gtggtgatcc tcatgcccga acccgtagcc gaacccgcgc taaacggatt
     1801 gcgcctgaat ttgcgcattg tctccattgt catgtttaac ttcgccagct acctcaccat
     1861 cgggttgccg ctcgctgtat taccgggcta tgtccatgat gtgatgggct ttagcgcttt
     1921 ctgggcagga ttggttatca gcctgcaata tttcgccacc ttgctgagcc gtcctcatgc
     1981 cggacgttac gccgatttgc tgggccccaa aaagattgtc gtcttcggtt tatgcggctg
     2041 ctttttgagc ggtctgggat atctgacggc aggattaacc gccagtctgc ccgtcatcag
     2101 cctgttatta ctttgcctgg gacgcgtgat ccttgggatt gggcaaagtt ttgccggaac
     2161 gggatcgacc ctgtggggcg ttggcgtggt tggctcgctg catatcgggc gagtgatttc
     2221 gtggaacggc attgtcactt acggggcgat ggcgatgggt gcgccgttag gcgtcgtgtt
     2281 ttatcactgg ggcggcttgc aggcgttagc gttaatcatt atgggcgtgg cgctggtggc
     2341 cattttgttg gcgatcccgc gtccgacggt aaaagccagt aaaggcaaac cgctgccgtt
     2401 tcgcgcggtg cttgggcgcg tctggctgta cggtatggca ctggcactgg cttctgccgg
     2461 atttggcgtc atcgccacct ttatcacgct gttttatgac gctaaaagtt gggacggtgc
     2521 ggctttcgcg ctgacgctgt ttagctgtgc gtttgtcggt acgcgtttgt tattccctaa
     2581 cggcattaac cgtatcggcg gcttaaacgt agcgatgatt tgctttagcg ttgagataat
     2641 cggcctgcta ctagttggcg tggcgactat gccgtggatg gcgaaaatcg gcgtcttact
     2701 ggcgggggca gggttttcgc tggtgttccc ggcattaggt gtagtggcgg taaaagcggt
     2761 tccgcagcaa aatcaggggg cggcgctggc aacttacacc gtatttatgg atttatcgct
     2821 tggcgtgacc ggaccactgg ctgggctggt gatgagctgg gcgggcgtac cggtgattta
     2881 tctggcggcg gcgggactgg tcgcaatcgc gttattactg acgtggcgat taaaaaaacg
     2941 gcctccggaa cacgtccctg aggccgcctc atcatcttaa aacttactga ataaccagcg
     3001 tattaatgat gttttctgcg gtggtctgcg ctttttgctg atcgtcagcg ggcagcgtaa
     3061 tttgcatggt cagcagttga ttacccacgt tacccagaat aacggaagag tacgccgtct
     3121 ggcctttcgc ggagataata ctgtctaact gctgcatttt gtgacctttc agctcaatgg
     3181 ctttattggt taccacttgc agctgcggat cgcggctacg ttgctgatct tccagacgct
     3241 tcgccagcac cgccagatct tctttcggat catcgcccat gatgacgatg actgctttct
     3301 gcccggtggc gtcggaccag acatgcatgt tattggcctg cgttcccagc ttaccgctct
     3361 ggtcggtcat atccgctggc agcgagaaac ttaacttgcc atcaagcagg ttgacgggat
     3421 tcccggtagc gttactttcc gcgaccgaac cctgcgccgt agcgttagtg tctttatcat
     3481 cacaggccgc aagccccata accagcaggc caattccgac atatttaacc agattgcgca
     3541 ttgacttctt cctttcgata aacggccata acggctcatt catccatctt atcacaactc
     3601 tgataacgaa cctttaactc gcctgcaaag cgttgatttc ggatttatct gccagtcttt
     3661 tcaacagcat attgagtaat acgccataca ttggcaggaa gaaaacgata ctgattaaca
     3721 ctttgaaaca gtaatcgacc agcgcgattt ccatccagtg ttcagccata aaggcatccg
     3781 ggctacgcca gaaggcaatg aagaaaaagg ccagcgtgtc gctgacgtta ccgaacagtg
     3841 tggacgctgt cggtgccagc caccagcggc gactctgacg caggcggtta aaaacgtgca
     3901 cgtcgaggat ctgtcccagc gcgtaggcca tgaaactggc ggtggcgata cgggcgacaa
     3961 acaggttgaa gtgggcgagt gcgccgaatc cctgccagga acccatatag aatagcgacg
     4021 agatgacgta ggagatcagc aacgccggga tcatcaccgc aaagatgata cgacgggcca
     4081 gcggtgcgcc aaaaatacgc acggtcaggt cggtagcaag gaaaataaac gggaagctaa
     4141 acgcgcccca ggtggtatgg aaacccaaaa tggagacggg aagctgaacc agatagttac
     4201 tggaggtgat caccagcaga tgaaataacg ataaccagaa caacgcctta tagcgttgag
     4261 tttgcgagaa aacgttcata ttgtaccttt ttgattaacc attggggtga gggaacccaa
     4321 tacgtacgac acgtctgtta ccttaacata ataacgtgct tacccttttt tcgagccgcc
     4381 gcatgatact gctttacgtt gacaatgcaa tggttaattt tcacgcaatc gttaacctgg
     4441 tttgcttacg gactcacagg gcgtaaacta gcgccgtttt tttatgtgat gagaagaaaa
     4501 tgaccgatct cttttccagc cctgaccaca cactcgacgc acttggcctg cgctgcccgg
     4561 aacccgtaat gatggtgcgc aaaactgtgc gcaatatgca gcccggcgaa acgttgctga
     4621 ttatcgccga cgatccggcc actacccgcg atattcctgg gttttgtacc tttatggaac
     4681 acgaactggt tgcgaaagag acggatggac tgccttatcg ttatttgatt cgtaaaggcg
     4741 gttgatgggg gctgattggc ttcgatgccg ccttttcccc tcaccctaac cctctcccca
     4801 gaggggcgag gggaccgatc gcgctcaata ttgcgatcgg tttgccttat ctcctgcgca
     4861 acaatcttaa cgcattcgct gtcaccagca ccgtcgcacc cgtatctgcc agcaccgcca
     4921 gccatagtcc ggtcatccct aaaagcgtgg tgacgaggaa gatccctttc agtcccagcg
     4981 caatggtgat gttctggcgg atattggcgt gagtggcgcg tgccagttca atcatttgca
     5041 ccaggccgcg caggtggtta tgggttaatg ctgcatcagc ggtttccagc gccacgtctg
     5101 tgccactgcc cattgcaatc ccaatggcgg cagctttcat cgctggcgcg tcgttaatac
     5161 cgtcaccgac catcgccagc ggcgcatgtt gattcagctc ggtcaccgct ttgactttat
     5221 cttccggcaa caggcccgct ttaaactcca gccccagctc cccggcaatt gccgccgctg
     5281 cgcgtggatt atcgccggtg aggatcaccc ctttgacgcc cagcgcgttc agttcactga
     5341 tggcagttgc agcatcggcg cgcagggtat cctgcaatgc aatgataccc agcacgtcat
     5401 cattacgtac taccagcaca accgtttgcc cggcgctttc cagttcatta atcaaaccag
     5461 caaatgcatc agcgggatgt ttcccggcag cgcatatcaa cacgcgctca ccgttaacct
     5521 gcgcttcaat gccagacccg accagcgccc gctgtgattc ggcggcggga atggcgagtg
     5581 cagcaacctg tgcttcgcgc acgatggcct gcgccagtgg atgcgtcgcg ctttgctcga
     5641 ccgccgccgc cagtgtcagc agttcagatt cactaatacc cgttgccgga tgaatcgcgg
     5701 taacgcgcgg tttaccgacg gtcagcgtac cggttttatc aaacgccacc tgagtaacac
     5761 gacctagttg ttccagcgcc gctccgcctt taatcaacgc cccacgacgc gctgctgccg
     5821 ccagcccgga ggtaatcgcc gcgggcgtgg agataactaa cgcacacggg cagccaatca
     5881 gcagcagcgt caggccttta taaatccact cctgccagct ggcggcaaac agcagcggtg
     5941 gcaccagcgt caccagcagg gcgacggcca taatcgctgg cgtataaata cggctgaaac
     6001 ggtcgataaa ccgctcaatg ggggcgcggc gctcttcggc ttcttcgatc agtttcagaa
     6061 tccggtcaat ggcgctggca cccggttctg acagcacttc cagcgttacc agacggtcta
     6121 cgctggtggc tcctgcagga actttatcgc ccgtcgcgcg ctccaccgga atggattctc
     6181 cggtcagggc gctttcatca aaactggcaa acggtgagag cagtttaccg tcggcaggca
     6241 aacgcccacc tgcggcgact tcaatcacat cgccaggccg caggctgtta atcgccacct
     6301 cttcccgctc accgttacgc aggcgcgtgg cggtttctgg tttcagcgcc attaacgcgc
     6361 taacgccctg acgcgcgcgg ctggcggccc agccttccag tcgttcacca atcaaaaaca
     6421 gcagcaacac catcgcagct tcagccgttg cgccaataaa cagtgcacca atagcggcta
     6481 cgctcattaa ggtttcaatg gcgaagtagc tgccggattt gatcagccgt aatgcctgat
     6541 gagcaatcgg gtacagccca accagcgtgg tcgcgataaa cgccagttgc ccgaacggat
     6601 gattgaactg ctccagaccc cagctgattg ccatcatcac gattagtgta atcagcggca
     6661 gattctcttt caggcgcgat gcttgtggct cgtcggcggc ctgctcatcg cgcagggaat
     6721 agcccgcttt ttgcaccgca gattcaactt gtgcacgaat gtcattgtcg gcatcaacca
     6781 ccagtttttc ggtggcgaac aacacctgca cctgattcac acctgcaagc tggcgcacgg
     6841 cattttctac cttgcgcgca caggcggcgc agtccatgcc actgactttc cagctatagc
     6901 gggtgccgga gacgttttca gagagcgttg gcgagctgga gcatgcgccg tcgcagcaac
     6961 agtcgttggc gttctgtacc gtggttagcg gtttgaacgc agcaaattga ggggctttct
     7021 tgccgtgatt gtcaggtgtc gacatggcat actccggtta agttttttct cattaaccga
     7081 aggatacact ctggagtcga ctccagagtc aagttttatc agagatacag tgagcggacg
     7141 atgaggaagt gaccggcaaa gtagcaggcc gcagcaatcg cgttatccgc acggaagcgt
     7201 cggcgatagt ggctccccag ccagacaaag ttactgataa acagcaacga agcgccaaca
     7261 aacgcagaga gcgccggagc ggtcggacgg aagaaccaca gttcacctgc cagccacacc
     7321 atcaccagcg tcatgccgat aaacgtgcag ataggccaac gatactcttc cagccgcgtc
     7381 cagataatcg ccagtaacag cgcacccaga accagcaaca ccagtggcag aggccagaag
     7441 aaagagagcg tcatctgact ggcgaaatag atggtgtaca gcaggtgcga gaggaaaaac
     7501 gcgccgatgg cgtacatcag acgttgacgt ggcaacaggg ttagcgcatc gcccagcagt
     7561 gaggcgcaca gccctgccag caccagatag ctaatggcgt cgaacatcgg cgcttgccag
     7621 gccagtaaca gcaggagaag aagggttaac ggtttaaaca cccagcgttg ccaggttggc
     7681 ccacgatacg atgcatccac agatagccat gcggaaagac agacagcgat aaacgaccaa
     7741 agcatcttag ttccttgaat tcgttatttt ttcgtaagcg gaatgcctac ggtcttgctt
     7801 ccagtttagt ggcgagggtg gacggatgac aacaccataa ctggcagggt atgcttattt
     7861 ccgcattttc cgatgaggga taaagatgag caaaccacct cttttcttta ttgttatcat
     7921 tggcttaatt gtcgtcgccg catcgtttcg ttttatgcaa cagcgacggg aaaaagctga
     7981 taatgatatg gctccgctcc agcaaaagct ggtggtggtg agcaacaagc gggaaaaacc
     8041 gattaacgat cgccgttcgc gccagcagga agtgactccg gcaggcgcca gtatgcgcta
     8101 tgaggcaagc ttcaaaccgc aaagcggagg aatggagcag acgtttcgcc tcgacgccca
     8161 gcagtaccat gccctgacag tgggcgataa aggtacgctg agctataaag gaacgcgctt
     8221 tgttagcttt gttggcgaac aataaggtta ttttttaact ttaaatttct tctgccagac
     8281 cagcagttca aacacgccga aaaggaaaat ccgcaccttt tcggcggtgg tcatctgcgg
     8341 gccatctttc ggtaaagtgg atttcaatag cgccagctgc ataccatgca tcagcacggt
     8401 aaaaatcagc gccacgttaa cgaaaatatt cagcgggcgc gggaagggat gcaccagatt
     8461 gaggattaaa aatccccaaa cgcagagcat taacaaacga ccaatattaa tcagcatcac
     8521 tttctccttg tgcttcgcgt tgatacagcc gataagccac ctgacccgcc actttttccc
     8581 gatgtaatga ccagtttgcc ggaacagtgg gcagaccgtt ttcgacttcg ctttcgacat
     8641 aaatcagggc ttcgtcagcc agccagccgt tatcttccag taaatttatc gtctcttcta
     8701 acaagccacg gcggaacggt ggatcgacaa acacgatatt atgcggtgta cctttttgcg
     8761 ccaggaatga catcgcgttg ctgttcacca cgcgtgcatt gcctgctttt agtgtcgcca
     8821 gattcttaat taactgctga gaaaccgcgc gatccatctc aatcaacgtg gcccccgcag
     8881 cgtagcgcga taacgcttcc agtcccagcg cgccgctccc ggcgaagcaa tccagacatt
     8941 gggcgtcaac aatgaccgga gccagccagt taaacaacgt ttcgcgtacg cggtcggtgg
     9001 tggggcgcag acctgggcta tcaggaaccg ggagtttacg gcctcgccac tgcccgccaa
     9061 taatgcggat ttggccgctg ccggaatgat tcgttttttt catgataaat tgctcaatcc
     9121 gccagataac acatacttgc aggcggtgat gtgaattaag ttaagtgata gactatttca
     9181 tcattttttt agctgctatg tacatagcgt taacgctgtg ccatgaagca acagcgagga
     9241 gtgtagtcgc aaatggcgaa agaaaaaaaa cgtggctttt tttcctggct gggctttggt
     9301 caaaaagagc agaccccgga aaaagagaca gaagttcaga atgaacaacc ggttgtagaa
     9361 gaaatcgttc aggcgcaaga gcctgcgaag gcttctgaac aagccgtcga agagcaaccg
     9421 caggcgcata ctgaagccga ggcggaaact tttgctgccg acgttgtgga agtcactgaa
     9481 caggttgctg aaagtgaaaa agcgcagcct gaagcggaag tcgttgcaca gccggaaccg
     9541 gtcgtagaag aaacgccgga gccagtggct atcgaacgtg aagagctgcc gttgccggaa
     9601 gacgtcaacg ccgaagaggt ttcgccagaa gagtggcagg ctgaagcgga aaccgtagag
     9661 attgtcgaag cggcggaaga agaagcggct aaagaagaaa tcaccgacga agagctggaa
     9721 gcacaggcgc tggctgccga agcggcagaa gaggcggtga tggtggttcc tccggtagaa
     9781 gagcagccgg tggaagaaat cgctcaggag caggaaaaac cgaccaaaga aggtttcttc
     9841 gcgcgcctga aacgcagcct gttaaaaacc aaagaaaatc tcggttccgg atttatcagc
     9901 ctgttccgcg gtaaaaaaat cgacgatgat ctgtttgagg agctggaaga acagctgttg
     9961 atcgccgatg tgggcgtgga aaccacacgt aaaattatca ccaatctgac ggaaggcgca
    10021 tcccgcaagc agcttcgtga tgccgaggcg ctctatggcc tgctgaaaga agagatgggc
    10081 gagattctgg cgaaagtcga tgagccgctg aatgttgaag gtaaaacgcc gttcgtgatc
    10141 ctgatggtgg gcgtcaacgg tgtgggtaaa actacgacga ttggtaagct ggcacgtcag
    10201 tttgagctgc agggtaaatc ggtgatgctg gcggcgggcg atactttccg tgcagcagcg
    10261 gttgaacagc ttcaggtctg gggtcagcgc aacaatattc cggtgattgc ccagcatacc
    10321 ggtgcggatt ccgcctctgt tatcttcgac gccattcagg cagctaaagc gcgtaatatc
    10381 gacgtcctga ttgccgatac cgccggacgc ctgcagaaca aatcgcacct gatggaagag
    10441 ttgaagaaaa tcgtccgcgt gatgaagaaa ctcgacgttg aagcgccgca tgaagttatg
    10501 ctgactattg atgccagtac cgggcagaat gcggtaagcc aggccaaact gttccacgaa
    10561 gccgttggct taaccggcat cacgctaacg aaactggacg gcacggcgaa aggcggggta
    10621 attttctcgg tggctgacca gtttggtatc cctatccgct acattggtgt cggcgaacgt
    10681 attgaggatt tgcgtccgtt taaggcggac gactttatag aggcactttt tgcccgagag
    10741 gattaacaat gattcgcttt gaacatgtca gcaaggctta tctcggtggg agacaggcgc
    10801 tgcagggcgt tacgttccat atgcagccgg gtgagatggc gtttctgacc ggtcattccg
    10861 gcgcagggaa aagtaccctc ctgaagctga tctgtgggat tgagcggccc agcgccggga
    10921 aaatctggtt tagcggccat gacatcacgc gtctgaaaaa ccgtgaagtt ccgtttctgc
    10981 gccgccagat tggcatgatt ttccaggatc accatctact gatggaccgt actgtctacg
    11041 ataacgtggc gatcccgctg attatcgctg gtgccagcgg tgacgatatt cgtcgccggg
    11101 tgtcggcggc actggataaa gtcgggctac tggacaaagc gaagaacttc cctattcagc
    11161 tttccggcgg tgaacaacag cgtgttggca ttgcccgcgc ggtggtgaat aagcccgcgg
    11221 tactgctggc ggacgaaccg accggtaacc tggacgacgc gttgtcggaa gggattctac
    11281 gtctgtttga agagtttaac cgcgttgggg taaccgtatt gatggcaacg cacgacatca
    11341 acctgatttc acggcgttcc tatcgcatgc tcaccctgag cgatggtcac ttgcatggag
    11401 gcgtgggcca tgaataagcg cgatgcaatc aatcatattc ggcagtttgg tgggcgtctg
    11461 gatcgcttcc gtaaatcggt cggcggctca ggcgacggcg gtcgtaacgc accgaaacgc
    11521 gcgaaatcct cgccaaaacc ggtaaatcgc aaaaccaacg ttttcaacga acaggtgcgc
    11581 tatgccttcc acggcgcatt gcaggatctg aaaagcaaac cgttcgccac gtttttaacg
    11641 gtgatggtta tcgccatctc cctgacgctg cccagcgtct gttatatggt gtacaaaaac
    11701 gttaatcagg cggcgacgca gtattatccg tcaccgcaaa tcactgttta cttgcaaaaa
    11761 acgctggacg atgacgccgc tgcgggcgtg gtggcacagt tgcaggccga gcaaggcgtg
    11821 gagaaagtga actatctttc tcgtgaagac gcactgggcg agttccgtaa ctggtctggt
    11881 tttggtggtg cgctggatat gctggaagaa aacccgcttc cggcagtggc ggtggtgatc
    11941 ccgaaactcg attttcaggg gacggaatca ctcaatacgc tgcgtgatcg tatcacgcag
    12001 attaacggca ttgacgaagt gcggatggat gacagctggt ttgcccgtct ggcggcgttg
    12061 accgggctgg tcgggcgcgt ttcggcgatg atcggcgtgt tgatggtggc ggcagtgttc
    12121 ctcgtcatcg gcaacagcgt acgtctgagc atctttgctc gccgtgactc catcaacgtg
    12181 cagaaactga ttggtgcgac ggatggtttc atccttcgcc cgttcctgta tggtggcgca
    12241 ctgctgggat tttctggcgc attgttgtca ttaattttgt cagaaattct ggtgctgcga
    12301 ttgtcatcgg cggttgcgga agtggcacag gttttcggaa cgaattttga tatcaatggt
    12361 ttatcgttcg atgaatgcct gctattgctg ctggtatgct cgatgattgg ctgggtggca
    12421 gcgtggcttg ccacggtaca acatttacgc cactttacgc ctgaataata aaagcgtgtt
    12481 atactctttc cctgcaatgg gttccgtagc agggaaagag atcccgttgt ctcttcccgg
    12541 tatttcatct ctatgtcaca ttttgtgcgt aatttattca caagcttgca ttgaacttgt
    12601 ggataaaatc acggtctgat aaaacagtga atgataacct cgttgctctt aagctctggc
    12661 acagttgttg ctaccactga agcgccagaa gatatcgatt gagaggattt gaatgactga
    12721 caaaatgcaa agtttagctt tagccccagt tggcaacctg gattcctaca tccgggcagc
    12781 taacgcgtgg ccgatgttgt cggctgacga ggagcgggcg ctggctgaaa agctgcatta
    12841 ccatggcgat ctggaagcag ctaaaacgct gatcctgtct cacctgcggt ttgttgttca
    12901 tattgctcgt aattatgcgg gctatggcct gccacaggcg gatttgattc aggaaggtaa
    12961 catcggcctg atgaaagcag tgcgccgttt caacccggaa gtgggtgtgc gcttggtctc
    13021 cttcgccgtt cactggatca aagcagagat ccacgaatac gttctgcgta actggcgtat
    13081 cgtcaaagtt gcgaccacca aagcgcagcg caaactgttc ttcaacctgc gtaaaactaa
    13141 gcagcgtctg ggctggttta accaggatga agtcgaaatg gtggcccgtg aactgggcgt
    13201 aaccagcaaa gacgttcgtg agatggaatc acgtatggcg gcacaggaca tgacctttga
    13261 cctgtcttcc gacgacgatt ccgacagcca gccgatggca ccggtgctct atctgcagga
    13321 taaatcatct aactttgccg acggcatcga agatgataac tgggaagagc aggcggcaaa
    13381 ccgtctgacc gacgcgatgc aaggtctgga cgaacgcagc caggacatca tccgcgcgcg
    13441 ctggctggac gaagacaaca agtccacgtt gcaggaactg gctgaccgtt acggtgtttc
    13501 cgctgaacgt gtacgccagc tggaaaagaa cgcgatgaaa aaactgcgcg ctgctataga
    13561 agcgtaattt ccgctattaa gcagagaacc ctggatgaga gtccggggtt tttgtttttt
    13621 gggcctctac aataatcaat tccccctccg gcaaaacgtc aatccccacg cagattgtta
    13681 ataaactgtc aaaatagcta ttccaatatc ataaaaatgg ggtatgtttt agcagagtat
    13741 gctgctaaag cacgggtagt tatgcataaa acgaaataaa gtgctgaatc acaacgccac
    13801 aacacacgta ataaccagaa gaatggggat tctcaggatg aatataaagg gtaaagcgtt
    13861 actggcagga tgtatcgcgc tggcattcag caatatggct ctggcagaag atattaaagt
    13921 cgcggtcgtg ggcgcaatgt ccggtccggt tgcgcagtac ggtgaccagg agtttaccgg
    13981 cgcagagcag gcggttgcgg atatcaacgc taaaggcggc attaaaggca acaaactgca
    14041 aatcgtaaaa tatgacgatg cctgtgaccc gaaacaggcg gttgcggtgg cgaacaaagt
    14101 cgttaacgac ggcattaaat atgtgattgg tcacctctgt tcttcatcaa cgcagcctgc
    14161 gtctgatatc tacgaagacg aaggcatttt aatgatcacc ccagcggcaa cctcgccgga
    14221 gctgaccgcc cgtggctatc agctgatcct gcgcaccacc ggcctggact ccgaccaggg
    14281 gccgacggcg gcgaaatata ttcttgagaa agtgaaaccg cagcgtattg ctatcgttca
    14341 cgacaaacag caatacggcg aaggtctggc gcgagcggtg caggacggcc tgaagaaagg
    14401 caatgctaac gtggtgttct ttgatggtat caccgccggg gaaaaagatt tctcaacgct
    14461 ggtggcgcgt ctgaaaaaag agaatatcga cttcgtttac tacggcggtt atcacccgga
    14521 aatggggcaa atcctgcgtc aggcacgcgc ggcagggctg aaaactcagt ttatggggcc
    14581 ggaaggtgtg gctaacgttt cgctgtctaa cattgcgggc gaatcagcgg aagggctgct
    14641 ggtgaccaag ccgaagaact acgatcaggt tccggcgaac aaacccattg ttgacgccat
    14701 caaagcgaaa aaacaggacc caagcggcgc attcgtttgg accacctacg ccgcgctgca
    14761 atctttgcag gcgggcctga atcagtctga cgatccggct gagatcgcca aatacctgaa
    14821 agcgaactcc gtggataccg tgatgggtcc gctgacgtgg gatgagaaag gtgatctgaa
    14881 aggctttgag ttcggcgtat ttgactggca cgccaacggc acggcgaccg atgcgaagta
    14941 atcattaatc ggcaactttg ggttgccgcc aaattgctaa tatcgagtac gttgcttcat
    15001 gccggatgcg gcgtaaacgc cttatccggc ctacaagatc caaagaaatc agtaaattgc
    15061 aacacacatt gtaggcctga taagcgtagc gcatcaggca atttctcgtt ggtcatcact
    15121 tttgaaatca acttgacgat taacgcttct cccagccgcc ctgttgcgcc gtaaatccca
    15181 gtgcctgcat aaacgccgtc atcacaccgc gatcttccac gcctgcatcc gccatccacc
    15241 agcatgaaac gccaggattg ttacgcaaaa cctcttccag cagatattgc cccacaccgc
    15301 gacgtcgggt gacttcccgc acacgcaggg aatccagtgc tccctcggtg ccgcttaagg
    15361 ttacccgtac ggcagcgagc aggcgctcgt taaaacgcgc ggcgtagata cggtggttat
    15421 cgtcaacctg taaagaggaa ggggaatact ccggccagat cttttgcagg tcaatccggt
    15481 cctggtcgct aaagttttct aatcgaatga tagtcagcgt catgggtaac ccgtgtaaat
    15541 cacaaaagtg gaaccagtgt agcgaaataa tttaatcgga ggctttctct tttttatttc
    15601 ttttggcagg tgattaattt tttaacagca ataattacaa agttaaaaca ttagagaatg
    15661 aaaaataccc agcataatcc cctgaatggt agtgaattat tccgcccttt gtgccgttat
    15721 tttatgctga caaaggcact tttttctgtt tatctatcaa taaattcaga atattatctg
    15781 ttcttaatcg actgaaagat agggatttta atcactatta tcacaaaata ctgcgctaaa
    15841 cccttaatca gacaggcaaa aacagtgcag tataaaaaaa gaacagtctg atttgttaac
    15901 acataaaaac aaagcaacac aacatcacga atggggattt ttgactatga aacggaatgc
    15961 gaaaactatc atcgcaggga tgattgcact ggcaatttca cacaccgcta tggctgacga
    16021 tattaaagtc gccgttgtcg gcgcgatgtc cggcccgatt gcccagtggg gcgatatgga
    16081 atttaacggc gcgcgtcagg cgattaaaga cattaatgcc aaagggggaa ttaagggcga
    16141 caagctggtt ggcgtggaat atgacgacgc ctgcgacccg aaacaagccg ttgcggtcgc
    16201 caacaaaatc gttaatgacg gcattaaata cgttattggt catctgtgtt cttcttctac
    16261 ccaacctgca tcagatatct acgaagacga aggtattctg atgatctcac cgggagcgac
    16321 caacccggag ctgacccaac gcggttatca acacattatg cgtactgccg ggctggactc
    16381 ttcccagggg ccaacggcgg caaaatacat tcttgagacg gtgaagcccc agcgcatcgc
    16441 catcattcac gacaaacaac agtatggcga agggctggcg cgttcggtgc aggacgggct
    16501 gaaagcggct aacgccaacg tcgtcttctt cgacggtatt accgccgggg agaaagattt
    16561 ctccgcgctg atcgcccgcc tgaaaaaaga aaacatcgac ttcgtttact acggcggtta
    16621 ctacccggaa atggggcaga tgctgcgcca ggcccgttcc gttggcctga aaactcagtt
    16681 tatggggccg gaaggtgtgg gtaacgcatc attgtcgaat attgccggtg atgctgccga
    16741 aggcatgttg gtcactatgc caaaacgcta tgaccaggat ccggcaaacc agggcatcgt
    16801 tgatgcgctg aaagcagaca agaaagatcc gtccgggcct tatgtctgga tcacctacgc
    16861 ggcggtgcaa tctctggcga ctgcccttga gcgtactggc agcgatgagc cgctggcgct
    16921 ggtgaaagat ttaaaagcta acggtgcaaa caccgtgatt gggccgctga actgggatga
    16981 aaaaggcgat cttaagggat ttgattttgg tgtcttccag tggcacgccg acggttcatc
    17041 cacggcagcc aagtgatcat cccaccgccc gtaaaatgcg ggcgggttta gaaaggttac
    17101 cttatgtctg agcagttttt gtatttcttg cagcagatgt ttaacggcgt cacgctgggc
    17161 agtacctacg cgctgatagc catcggctac accatggttt acggcattat cggcatgatc
    17221 aacttcgccc acggcgaggt ttatatgatt ggcagctacg tctcatttat gatcatcgcc
    17281 gcgctgatga tgatgggcat tgataccggc tggctgctgg tggcggcggg attcgtcggc
    17341 gcaatcgtca ttgccagcgc ctacggctgg agtatcgaac gggtagccta tcgcccggtg
    17401 cgtaactcta agcgcctgat tgcgctcatc tcggcaatcg gcatgtccat cttcctgcaa
    17461 aactacgtta gcctgactga aggttcgcgt gacgtggcgc tgcccagtct gtttaacggt
    17521 cagtgggtgg tggggcatag cgaaaacttc tctgcctcta ttaccaccat gcaggcagtg
    17581 atctggattg ttactttcct cgccatgctg gcgctgacga ttttcattcg ttattcccgt
    17641 atggggcgcg cctgccgtgc ctgcgcggaa gatctgaaaa tggcgagcct gcttggcatc
    17701 aacaccgacc gggtgattgc tttgaccttt gttattggcg cggcgatggc ggcagtggct
    17761 ggcgtactgc tcggtcagtt ctacggcgtc attaacccct atatcggctt tatggccggg
    17821 atgaaagcct ttaccgctgc ggtgctcggt gggattggca gcattccagg ggcgatgatt
    17881 ggtgggctga tcctggggat tgcggaggcg ctctcttctg cctatctgag tacggaatat
    17941 aaggatgtgg tttcatttgc cctgctgatt ctggtgctgc tggtgatgcc gaccggtatt
    18001 ctgggtcgcc cggaggtaga gaaagtatga aaccgatgca tattgcaatg gcgctgctct
    18061 ctgccgcgat gttttttgtt ctggcgggcg tctttatggg cgtgcaactg gagctggatg
    18121 gcaccaaact ggtggtcgac acggcttcag acatccgttg gcagtgggtg tttatcggca
    18181 cggcggtggt ctttttcttc cagcttttgc gaccggcttt ccagaaaggg ctaaaaagcg
    18241 tttccggacc gaagtttatt ctgcccgcga ttgatggctc cacggtgaag cagaaactgt
    18301 tcctcgtggc gctgttggtg cttgcggtgg cgtggccgtt tatggtgtca cgtgggacgg
    18361 tggatatcgc cactctgacc atgatctaca ttatcctcgg tctcgggctg aatgtggttg
    18421 ttggtctttc tggtctgctg gtgctggggt acggcggttt ttacgccatc ggcgcttaca
    18481 cctttgcgct gctcaatcac tattacggct tgggcttctg gacttgtctg ccgattgccg
    18541 ggttaatggc agcggcggcg ggcttcctgc tcggctttcc ggtgctgcgt ctgcgcggtg
    18601 attatctggc gatcgttacc ctcggcttcg gcgaaattgt gcgcatattg ctgctcaata
    18661 acaccgaaat taccggcggc ccgaacggaa tcagtcagat cccgaaaccg actttcttcg
    18721 gccttgagtt cagccgtacc gcccgtgaag gcggttggga cacgttcagt aatttctttg
    18781 gcctgaaata cgatccctcc gatcgcgtca tcttcctgta tctggtggcg ttgctgctgg
    18841 tggtgctaag cctgtttgtc attaaccgcc tgctgcggat gccgctgggg cgtgcgtggg
    18901 aagcgttgcg tgaagatgag atcgcctgcc gttcgctggg cttaagcccg cgtcgtatca
    18961 agctgaccgc ttttaccatc agtgccgcgt ttgccggttt tgccggaacg ctgtttgctg
    19021 cgcgccaggg ctttgtcagc ccggaatcct tcacctttgc tgaatcggcg tttgtactgg
    19081 cgatagtggt gctcggcggt atgggatcgc agtttgcggt gattctggcg gcaattttgc
    19141 tggtagtgtc gcgcgagttg atgcgtgatt tcaacgaata cagcatgtta atgctcggtg
    19201 gtttgatggt gctgatgatg atctggcgtc cgcagggctt gctgcccatg acgcgcccgc
    19261 aactgaagct gaaaaatggc gcagcgaaag gagagcaggc atgagtcagc cattattatc
    19321 tgtgaacggc ctgatgatgc gcttcggcgg cctgctggcg gtgaacaacg tcaatcttga
    19381 actgtacccg caggagatcg tctcgttaat cggtcctaac ggtgccggaa aaaccacggt
    19441 ctttaactgc ctgaccggat tctacaaacc cactggaggc accattttac tgcgcgatca
    19501 gcatctggaa ggtttaccgg ggcagcaaat tgcccgcatg ggcgtggtgc gtaccttcca
    19561 gcatgtgcgt ctgttccgtg aaatgacggt gattgaaaac ctgctggtgg cgcagcatca
    19621 gcaactgaaa accgggctgt tctctggcct gttgaaaacg ccatccttcc gtcgcgccca
    19681 gagcgaagcg ctcgatcgcg ccgcgacctg gcttgagcgc attggtttgc tggaacacgc
    19741 caaccgtcag gcgagtaacc tggcctatgg tgaccagcgc cgtcttgaga ttgcccgctg
    19801 catggtgacg cagccggaga ttttaatgct cgacgaacct gcggcaggtc ttaacccgaa
    19861 agagacgaaa gagctggatg agctgattgc cgaactgcgc aatcatcaca acaccactat
    19921 cttgttgatt gaacacgata tgaagctggt gatgggaatt tcggaccgaa tttacgtggt
    19981 caatcagggg acgccactgg caaacggtac gccggagcaa atccgtaata acccggacgt
    20041 gatccgtgcc tatttaggtg aggcataaga tggaaaaagt catgttgtcc tttgacaaag
    20101 tcagcgccca ctacggcaaa atccaggcgc tgcatgaggt gagcctgcat atcaatcagg
    20161 gcgagattgt cacgctgatt ggcgcgaacg gggcggggaa aaccaccttg ctcggcacgt
    20221 tatgcggcga tccgcgcgcc gccagcgggc gaattgtgtt tgatgataaa gacattaccg
    20281 actggcagac ggcgaaaatc atgcgcgaag cggtagcgat tgtcccggaa gggcgtcgcg
    20341 tcttctcgcg gatgacggtg gaagagaacc tggcgatggg cggctttttt gccgaacgcg
    20401 accagttcca ggagcgcata aagtgggtgt atgaactgtt tccacgtctg catgagcgcc
    20461 gtgttcagcg ggcaggcacc atgtccggcg gtgagcaaca aatgctggcg attggtcgcg
    20521 cgctgatgag caacccgcgt ttgctgctac ttgatgagcc atcgctcggt cttgcgccga
    20581 ttatcatcca gcaaattttc gacaccatcg agcagctgcg cgagcagggg atgactatct
    20641 tcctcgtcga gcagaacgcc aaccaggcgc taaagctggc ggatcgcggc tacgtgctgg
    20701 aaaacggcca tgtggtgctc tccgataccg gcgacgcgct gctggcgaac gaggcagtga
    20761 gaagtgcgta tttaggcggg taataacacg ttgattgata aggagtcaaa agactccttt
    20821 gagacaggtg acaaatgtaa aattgcctga tgcgctgcgc ttatcaggcc tactgggtga
    20881 gttgcaatat attgaatttg cacgatcttg taggccggat aaggcgttta cgccgcatcc
    20941 ggcatgaaac gatgagtaat ctgtagagtt tgattcagac cttctatttt tccgcttatc
    21001 cgtgccccat ctcccatttt ccctcaccca cgccgtcacc gccttgtcat ctttctgaca
    21061 ccttactatc ttacaaatgt aacaaaaaag ttatttttct gtaattcgag catgtcatgt
    21121 taccccgcga gcataaaacg cgtgaattcg cgcattcggt acaacaagag agataaacga
    21181 tgaaaccgtt acattataca gcttcagcac tggcgctcgg actggcgtta atggggaatg
    21241 cacaggcagt gacgaccatt ccgttctggc attctatgga aggggaactg ggtaaagagg
    21301 tggattctct ggcccaacgt tttaacgccg aaaatccgga ttacaaaatt gtaccgacct
    21361 ataaaggcaa ctacgaacag aatttaagcg cggggattgc cgcatttcgt accggcaacg
    21421 ctccggctat tttgcaggtt tatgaagttg gcaccgccac catgatggca tcgaaagcca
    21481 ttaaaccggt atatgacgtg tttaaagagg cggggattca attcgatgag tcgcagtttg
    21541 tgccgacggt ttccggttac tactccgaca gcaaaacggg ccacttactc tcccagccat
    21601 tcaacagctc gactcccgtt ctctattaca acaaagacgc cttcaagaaa gcggggttag
    21661 acccggaaca gccgccgaaa acctggcagg atctggcgga ctatgccgcg aaactgaaag
    21721 cctccggcat gaagtgcggc tacgccagcg gctggcaggg ctggatccaa ctggaaaact
    21781 ttagcgcttg gaacggtctg ccgtttgcca gcaaaaacaa cggctttgac ggcacagatg
    21841 cggtgctgga gttcaacaag ccggagcagg tgaaacacat cgccatgctc gaggagatga
    21901 acaagaaggg cgacttcagc tacgtcggtc gtaaggatga atccaccgag aagttctata
    21961 acggtgattg cgcgatgacc accgcctctt ccggttctct tgccaacatt cgcgagtacg
    22021 ccaaatttaa ctacggcgta ggcatgatgc cttacgacgg cgatgcgaaa gatgcgccac
    22081 aaaacgccat tatcggcgga gccagcctgt gggtgatgca gggtaaagat aaagaaacgt
    22141 ataccggtgt ggcgaagttc ctcgatttcc tcgcgaagcc agaaaacgct gccgagtggc
    22201 atcagaaaac cggttatctg ccaatcacca aagcagcgta tgacctgacc cgtgagcagg
    22261 gcttttatga gaaaaaccca ggggcggata ccgcgacgcg tcagatgctg aataagccgc
    22321 cgttgccgtt caccaaaggg ctgcgtctgg gcaacatgcc gcagatccgc gtgattgtgg
    22381 atgaagagct ggagagcgtg tggaccggta agaagacacc acagcaggca ctggataccg
    22441 ccgttgagcg tgggaaccag ttactgcgcc gctttgagaa atcgacgaag tcttaatcag
    22501 tgtaatgtcg gatgcgtttc gcttatctga cctggcatcg cgtgtaggcc ggataagcga
    22561 agcgcatccg gcacagttca ggaattaacc gtaatgtcat catcccgtcc ggtgttccgc
    22621 tcgcgctggc tgccttatct gctggtcgcg ccgcagctca tcatcaccgt tatctttttt
    22681 atctggcctg cgggcgaagc gttgtggtac tcgctgcaaa gcgtcgatcc gtttggtttc
    22741 tccagccagt ttgtcggtct ggataacttc gtcacgctgt tccatgacag ctactatcta
    22801 gactccttct ggacgacgat aaaattcagc acctttgtca ccgtcagcgg tttgctggta
    22861 tcgctgttct ttgcggcgct ggtggagtac atcgtgcgcg gcagccgttt ctatcaaacc
    22921 ttgatgctgc tgccgtatgc cgtggctccc gccgttgccg ccgtattgtg gatcttcctg
    22981 tttaaccccg gtcgcgggct gatcacccat tttctcgctg agttcggcta cgactggaac
    23041 cacgcgcaaa acagcggtca ggcaatgttt ctggtggtgt ttgcctcggt gtggaagcaa
    23101 atcagctaca actttctgtt cttctatgcc gcgctgcact ccattccccg ttcgttgatc
    23161 gaagccgcag ccatcgacgg tgcagggccg attcgccgct tctttaagat tgcgctgccg
    23221 cttatcgccc cggtgagttt cttcctgctg gtagtgaacc tggtgtatgc cttcttcgac
    23281 accttcccgg tgatcgacgc cgccacgtcc ggcgggccgg ttcaggccac cacgacgctg
    23341 atttataaga tctaccgcga aggttttacc ggactggatc tggcttcgtc tgccgcacag
    23401 tcggtggtgt tgatgttcct cgtcatcgtg ctgacggtgg tgcagttccg ctatgttgaa
    23461 agcaaggtgc gttaccaatg attgagaacc gtccgtggct gacgatattc agccatacca
    23521 tgctgatcct cgggatcgcg gtgatcctct tcccgctgta cgtggcgttt gtcgcggcga
    23581 cgctggataa acaggccgtc tatgccgcgc cgatgacgct catccccggc acacatctgc
    23641 tggaaaatat ccacaacatc tgggttaacg gggtaggtac gaatagcgcg ccgttctggc
    23701 ggatgttgct taacagcttt gtgatggcgt tcagcattac gctcggcaaa attaccgtct
    23761 cgatgctctc ggcatttgcc attgtctggt ttcgttttcc gctacgtaac ctcttcttct
    23821 ggatgatttt tatcaccctg atgctgccgg ttgaagtacg tatcttcccg acggtggaag
    23881 tcatcgccaa cctgaagatg ctcgacagct acgccggttt aacgctgccg ctgatggcct
    23941 cggcgaccgc cacgtttctg tttcgccagt tctttatgac gctgccggat gaactggtgg
    24001 aagcggcgcg gatcgacggc gcatcgccaa tgcgcttctt ttgcgacatc gtttttccgc
    24061 tctccaaaac taatctggcg gcgctgtttg tgatcacctt tatttacggc tggaaccagt
    24121 atttgtggcc gttgttgatt attaccgacg tggatctcgg caccaccgtg gcagggatca
    24181 aagggatgat cgccactggc gaaggcacca cggaatggaa ctcagtgatg gcggcgatgt
    24241 tgttaaccct gatcccacca gtagtgattg ttttagtgat gcagcgtgcc ttcgtgcgcg
    24301 gcctggtcga tagtgagaaa taagatggca ggactgaaat tacaggcagt aaccaaaagc
    24361 tgggatggca aaacccaggt cattaaaccg ctgacccttg atgtggctga tggcgaattt
    24421 atcgtgatgg tcgggccgtc tggctgcggg aaatcgacgc tgctgcgtat ggttgccggg
    24481 ctggagcggg tgaccgaagg cgatatctgg atcaacgacc agcgcgtgac tgaaatggag
    24541 ccgaaagatc gcgggattgc gatggtgttc cagaactacg cgctttatcc gcatatgagc
    24601 gtcgaagaaa acatggcgtg ggggcttaaa attcgcggca tgggcaagca gcaaattgcc
    24661 gagcgcgtta aagaagcggc gcgcattctg gtgctggacg gtctgctcaa acgtcgcccg
    24721 cgtgagctat ccggcggtca gcgtcagcgt gtagcgatgg gccgcgcgat tgtgcgcgat
    24781 ccggcggtgt tcctgtttga tgagccgctc tctaacctcg atgccaagct gcgcgtgcag
    24841 atgcgtcttg aactgcaaca gttgcaccgt cgcctgaaaa cgacttcact ctacgttact
    24901 cacgatcagg ttgaagcgat gacgctcgcc cagcgagtaa tggtgatgaa cggcggcgtt
    24961 gccgaacaga ttggcacacc agttgaagtc tacgaaaagc ccgccagcct gtttgtagcg
    25021 agttttatcg gcagtccggc gatgaacctg ctgacaggcc gcgtgaataa cgaaggcacg
    25081 catttcgaac tggacggcgg tattgagctg ccgctaaacg gtggctaccg tcagtatgcc
    25141 gggcgtaaaa tgactctcgg cattcgcccg gaacatattg tgctaagctc gcaggcagaa
    25201 ggcggcgtac cgctggtgat ggacacgctg gagatcctcg gcgcagataa cctggcgcac
    25261 ggacgctggg gcgagcagaa gctggtggtg cgactggcgc atcaggagcg cccgacggca
    25321 ggcagcacgc tgtggctgca tctggcggaa aatcagctgc atctttttga tggtgaaaca
    25381 ggacaacgag tatgagtaac tggccttatc cccgcatcgt cgctcatcgt ggcggcggta
    25441 agctggcccc ggaaaacacc ctggcggcaa tcgacgtcgg ggcaaaatac ggtcataaga
    25501 tgatcgaatt tgacgcgaag ttatcgaaag atggcgagat cttcctgctc catgacgaca
    25561 atctcgaacg caccagcaac ggctggggcg tcgcgggtga actgaactgg caggatttac
    25621 tgcgcgtgga tgcgggcagt tggtacagca aagcgtttaa aggtgagccg ctgccgttgc
    25681 tttcgcaggt ggcggaacgc tgtcgcgaac acgggatgat ggcgaatatc gaaatcaaac
    25741 ccaccactgg cactggacca ttaacgggca aaatggtggc gctggcggca cgccaactgt
    25801 gggccggtat gacgccgccg ctgctgtcat cgtttgagat tgatgcttta gaagctgcac
    25861 agctggcggc accggaactg ccgcgtggtt tattgcttga tgagtggcgc gacgactggc
    25921 gcgaactgac cgcgcggctg ggctgcgtct ctattcatct caatcataag ttactcgata
    25981 aagcgcgagt gatgcagttg aaagacgccg gattacggat tctggtttat accgtcaata
    26041 aaccccagcg cgcggcagag ttgctgcgct ggggcgtgga ttgcatctgt accgatgcga
    26101 ttgacgtgat tggtccgaac tttacggccc aatagttttc aacggaatgt caggctgcgg
    26161 cgtgctgggc tgattcagca tgtcgccgtt tctcctctcc ggcagcatat gctgctgatt
    26221 caacgaacta tccggattac ggttgctgtt taacatcccg ccgttggtgt tgggcagcat
    26281 ttgctgccgg gcgggatttc gctcccccgg ctgtgactgc aacacccgct gagaattatt
    26341 gtttatctgg ttttctaaat gctgctgttg caactgagtt tgcgttttca gttgctgatt
    26401 cagcatccct ttttgctgga tttgctgagt ttgcatctgg gtttgcatcc gctgctggct
    26461 gggtatctga taccccggct ggttagggtt gttcagagta ttaatgggct gtgcaaagcc
    26521 gacaaacggc aggagtgccg taagaatcag aagtcgtttc atcgcgtatc ctcctctgaa
    26581 gatatccttt aagtttactc gcttcccgac aaaacgatga ttaattcaga gttatatacc
    26641 aggcttagct ggggttgccc cttaatctct ggagaataac gatgataaaa ccgacgtttt
    26701 tacgccgggt agccattgct gctctgctct caggaagttg ttttagcgcc gtcgccgcgc
    26761 ctcctgtttc ttacggcgtg gaggaagata tcttccatcc ggtacgcgcg aaacagggga
    26821 tggtggcgtc tgtcgatgcc actgccaccc aagtgggggt agatattcta aaggagggcg
    26881 ggaatgccgt tgatgccgcc gtggcggtgg gctacgcgct ggcggtaacg catccgcagg
    26941 cagggaatct gggcggtggt ggttttatgc tgatccgctc gaaaaatggc aataccaccg
    27001 ctatcgattt ccgcgagatg gcacccgcta aagcgacccg cgatatgttc cttgatgacc
    27061 agggcaaccc ggacagcaaa aaatcactca cttcgcatct ggcttccggc acgcccggta
    27121 cggtcgctgg tttctcgctg gcgttggata agtacggcac tatgccgttg aacaaagtgg
    27181 tgcagcccgc gttcaaactg gcacgcgatg gttttatcgt taacgatgct ttggcagacg
    27241 atctcaaaac ctacggtagc gaagtgttgc cgaatcacga aaacagcaaa gctatcttct
    27301 ggaaagaggg cgaaccgctg aaaaagggcg acaagctggt gcaggcgaac ctggcaaaga
    27361 gcctggagat gattgccgaa aacggcccgg acgaattcta taaaggcacg atagcggaac
    27421 agattgccca ggagatgcag aaaaacggtg gcttgatcac taaagaagat ttagcggcgt
    27481 ataaagcggt cgaacgcaca ccgataagtg gcgattatcg cgggtatcag gtttactcca
    27541 tgccaccgcc atcctccggc gggatccata tcgtacaaat cctcaatatt ctggaaaact
    27601 tcgatatgaa gaaatacgga tttggcagcg ccgatgcgat gcaaatcatg gcagaagcgg
    27661 agaaatacgc ctacgccgac cgctcggaat atcttggcga cccggatttt gtcaaagtac
    27721 cgtggcaggc gctgaccaat aaagcctatg ccaaatctat tgccgatcaa attgatatca
    27781 ataaagcgaa gccatccagc gaaattcgcc ccggcaagct tgcgccttat gagagtaatc
    27841 aaactaccca ttactcagtg gtggataaag atggtaacgc ggtggcggtg acctatacgc
    27901 tgaacaccac cttcggtacg ggcattgtcg cgggcgagag cggtattctg cttaataatc
    27961 agatggatga tttctccgct aaaccgggcg taccgaacgt ttacgggctg gtgggcggtg
    28021 atgccaacgc cgtcgggccg aataaacgtc cgctgtcgtc aatgtcacca acgattgtgg
    28081 tgaaagacgg taaaacctgg ctggtcaccg gtagccctgg cgggagccgg atcatcacta
    28141 cagtgctgca aatggtggtg aatagcatcg attatggcat gaacgtcgcc gaagcgacca
    28201 atgcgccgcg tttccaccat cagtggttgc cggacgagct gcgtgtcgaa aaagggttta
    28261 gcccggatac gctcaagctg ctggaagcaa aaggtcagaa agtggcgctg aaagaggcga
    28321 tgggcagtac acaaagcatt atggttgggc cggacggtga gttgtacggc gcatccgacc
    28381 cgcgctcggt ggatgattta acggcggggt actaaggtta gcggccctct tcgtgggaag
    28441 agggctattt tgtcagggca agccgaaggt agcctttttt atttcgtaat cctgtagata
    28501 ttcttccagc ggctttgccg ttcccagaga atgaatttca ccactgtctt tatcaataat
    28561 aaaaggtgcg ttaccagcta agcgcgcggc ctcatctcca gtttcgagaa attctcgtgc
    28621 ttcgaaacag aaataccagc cctggctaaa gcgtccatgt agagtaatga cgaccgggag
    28681 atctgcatca tcaaggtaat ggttcgcttt cgcgaatgcg tcgtgataag taatcataat
    28741 tataataaat attattgttg agtgttatat tattattcct gtgtgataca ttgagcaaag
    28801 acgtgttcat cttcgtcaaa gatattatta aatgctggtt ttgaaaaaag ttcatcggat
    28861 aagatatagt cacgaaataa gtatctgcta atattttata atttcttttt cagaacgtcg
    28921 aacgggattt tcttatttaa gatatcagaa tcttatgatt cgggtaaaat tctaaataaa
    28981 tcaatatgtc attaaaatca tcatagccat tagctatttc ggctaaaata gagactacat
    29041 gtcttcggtc catctcactt aaggagtgta gttccgttgt aagtttttcc atagcttgca
    29101 ctgctaaatt tcgaacaagg aattttctgc tggtaatctc taaaa
//
LOCUS       DADMHM010000036        29135 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.037, whole genome shotgun sequence.
ACCESSION   DADMHM010000036 DADMHM010000000
VERSION     DADMHM010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 29135)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29135)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29135
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.037"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..152
                     /locus_tag="JN125_001335"
     CDS             <1..152
                     /locus_tag="JN125_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2135 domain-containing protein"
                     /protein_id="HAY8871168.1"
                     /translation="YYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLV
                     KSFDW"
     gene            427..3276
                     /gene="rcsC"
                     /locus_tag="JN125_001336"
     CDS             427..3276
                     /gene="rcsC"
                     /locus_tag="JN125_001336"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416722.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     RcsC"
                     /protein_id="HAY8871169.1"
                     /translation="MKYLASFRTTLKASRYMFRALALVLWLLIAFSSVFYIVNALHQR
                     ESEIRQEFNLSSDQAQRFIQRTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAF
                     EPLFADSDCSAMSNTWRGSLESLAWFMRYWGDNFSAAYDLNRVFLIGSDNLCMANFGL
                     RDMPVERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGIGYFYALTPVYLANR
                     LQALLGVEQTIRMENFFLPGTLPMGVTILDENGHTLISLTGPESKIKGDPRWMQERSW
                     FGYTEGFRELVLKKNLPPSSLSIVYSVPVDKVRERIRMLILNAILLNVLAGAALFTLA
                     RMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLN
                     MLTHEDRQRLTQIICGQQVNFVDVLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRV
                     KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLV
                     TAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG
                     LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRADGDYLSIRVRDT
                     GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS
                     QFTVRIPLYGAQYPQKKGVEGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQE
                     PTPEDVLITDEVVSKKWQGRAVVTFCRRHIGIPLEKAPGEWVHSVAAPHELPALLARI
                     YLIEMESDDPANALPSTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTAND
                     GVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRC
                     LESGMDSCLSKPVTLDVIKQTLTVYAERVRKSRES"
     gene            complement(3362..4012)
                     /gene="rcsB"
                     /locus_tag="JN125_001337"
     CDS             complement(3362..4012)
                     /gene="rcsB"
                     /locus_tag="JN125_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator RcsB"
                     /protein_id="HAY8871170.1"
                     /translation="MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINN
                     LPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLD
                     IEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVLR
                     LFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDIALLNYLSSVTLSPADKD"
     gene            complement(4029..6689)
                     /gene="rcsD"
                     /locus_tag="JN125_001338"
     CDS             complement(4029..6689)
                     /gene="rcsD"
                     /locus_tag="JN125_001338"
                     /EC_number="2.7.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase RcsD"
                     /protein_id="HAY8871171.1"
                     /translation="MRQKETTATTRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNA
                     WLKDKSYQIVDITHAIQKRVNTWRYVTWQIYDNIAATTSPSSGEGFLKQDVYYLEKPR
                     RKTEALIFGSHDNSTLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLVLISTLPLK
                     DLTSGFKESTVSDIVDSRRAEMLQQANALDERESFSNMRRLAWQNGHYFTLRTTFNQP
                     GHLATVVAFDLPINDLIPPGMPLDSFRLEPDATATGDNDNEKEGTDSVSIHFNSTKIE
                     ISSALNSTDVRLVWQVPYGTLLLDTLQNILLPLLLNIGLLALALFGYTTFRHFSSRST
                     ESLPSTAVNNELRILRAINEEIVSLLPLGLLVHDQESNRTVISNKIADHLLPHLNLQN
                     ITTMAEQHQGIIQATINNELYEIRMFRSQVAPRTQIFIIRDQDREVLVNKKLKQAQRL
                     YEKNQQGRMTFMKNIGDALKEPAQSLAESAAKLNAPESKQLANQADVLVRLVDEIQLA
                     NMLADDSWKSETVLFSVQDLIDEVVPSVLPAIKRKGLQLLINNHLKAHDMRRGDRDAL
                     RRILLLLMQYAVTSTQLGKITLEVDQDESSEDRLTFRILDTGEGVSIHEMDNLHFPFI
                     NQPQNDRYGKADPLAFWLSDQLARKLGGHLNIKTRDGLGTRYSVHIKMLAADPEVEEE
                     EERLLDDVCVMVDVTSAEIRNIVTRQLENWGATCITPDERLISQDYDIFLTDNPSNLT
                     ASGLLLSDDESGVREIGPGQLCVNFNMSNAMQEAVLQLIEVQLAQEEVTESPLGGDEN
                     AQLHASGYYALFVDTVPDDVKRLYTEAATSDFAALAQTAHRLKGVFAMLNLVPGKQLC
                     ETLEHLIREKDVPGIEKYISDIDSYVKSLL"
     gene            7428..8558
                     /gene="ompC"
                     /locus_tag="JN125_001339"
     CDS             7428..8558
                     /gene="ompC"
                     /locus_tag="JN125_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpC"
                     /protein_id="HAY8871172.1"
                     /translation="MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYF
                     SDNKSEDGDQTYVRLGFKGETQVTDQLTGYGQWEYQIQGNTSEDNKENSWTRVAFAGL
                     KFQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRNTDFFG
                     LVDGLNFAVQYQGKNGSVSGEGMTNNGRGALRQNGDGVGGSITYDYEGFGIGAAVSSS
                     KRTDDQNGSYISNGVVRNYIGTGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGSL
                     GWANKAQNFEAVAQYQFDFGLRPSVAYLQSKGKNLGVINGRNYDDEDILKYVDVGATY
                     YFNKNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF"
     gene            8670..9725
                     /gene="apbE"
                     /locus_tag="JN125_001340"
     CDS             8670..9725
                     /gene="apbE"
                     /locus_tag="JN125_001340"
                     /EC_number="2.7.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase ApbE"
                     /protein_id="HAY8871173.1"
                     /translation="MEISFTRVALLAAALFFVGCDQKPQPAKTHATEVTVLEGKTMGT
                     FWRASIPGIDAKRSAELKEKIQTQLDADDQLLSTYKKDSALMRFNDSQSLSPWPVSEA
                     MAEIVTTSLRIGAKTDGAMDITVGPLVNLWGFGPEQQPVQIPSQEQIDEMKAKTGLQH
                     LTVINQSHQQYLQKDLPDLYVDLSTVGEGYAADHLARLMEQEGISRYLVSVGGALNSR
                     GMNGEGLPWRVAIQKPTDKENAVQAVVDINGHGISTSGSYRNYYELDGKRLSHVIDPQ
                     TGRPIEHNLVSVTVIAPTALEADAWDTGLMVLGPEKAKEVVRREGLAVYMITKEGDSF
                     KTWMSPQFKSFLVSEKN"
     gene            9799..10863
                     /gene="ada"
                     /locus_tag="JN125_001341"
     CDS             9799..10863
                     /gene="ada"
                     /locus_tag="JN125_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA-binding transcriptional
                     regulator/O6-methylguanine-DNA methyltransferase Ada"
                     /protein_id="HAY8871174.1"
                     /translation="MKNATCLTDDQRWQSVLARDPNADGEFVFAVRTTGIFCRPSCRA
                     RHALRENVSFYANASEALAAGFRPCKRCQPDKANAQQHRLDKITHACRLLEQETPVTL
                     EALADQVAMSPFHLHRLFKATTGMTPKAWQQAWRARRLRESLAKGESVTTSILNAGFP
                     DSSSYYRKADETLGMTAKQFRHGGENLAVRYALADCALGRCLVAESERGICAILLGDD
                     DATLISELQQMFPAADNAPADLTFQQHVREVIASLNQRDTPLTLPLDIRGTAFQQQVW
                     QALRTIPCGETVSYQQLANAIGKPKAVRAVASACAANKLAIVIPCHRVVRGDGTLSGY
                     RWGVSRKAQLLRREAENEER"
     gene            10863..11513
                     /gene="alkB"
                     /locus_tag="JN125_001342"
     CDS             10863..11513
                     /gene="alkB"
                     /locus_tag="JN125_001342"
                     /EC_number="1.14.11.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA oxidative demethylase AlkB"
                     /protein_id="HAY8871175.1"
                     /translation="MLDLFADAEPWQEPLAAGAVILRRFAFNAAEQLIRDINDVASQS
                     PFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHDLCQR
                     AATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLK
                     RNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTTDCRYNLTFRQAGKKE"
     gene            11589..13232
                     /gene="yojI"
                     /locus_tag="JN125_001343"
     CDS             11589..13232
                     /gene="yojI"
                     /locus_tag="JN125_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="microcin J25 efflux ABC transporter YojI"
                     /protein_id="HAY8871176.1"
                     /translation="MELLVLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIEMA
                     DTSLLVLPEFLGLLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQL
                     GSASLLAGLTSDVRNITIAFVRLPELVQGIILTIGSAAYLWMLSGKMLLVTAIWMAIT
                     IWGGFVLVARVYKHMATLRETEDKLYTDFQTVLEGRKELTLNRERAEYVFNNLYIPDA
                     QEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFWMANSLGWADTNVAATYSLTLLFLR
                     TPLLSAVGALPTLLTAQVAFNKLNKFALAPFKAEFPRPQAFPNWQTLELRNVTFSYQD
                     NAFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSGEQP
                     EDYRKLFSAVFTDVWLFDQLLGPEGKPANPQLVEKWLAQLKMAHKLELSNGRIVNLKL
                     SKGQKKRVALLLALAEERDIILLDEWAADQDPHFRREFYQVLLPLMQEMGKTIFAISH
                     DDHYFIHADRLLEMRNGQLSELTGEERDAASRDAVARTA"
     gene            13450..15096
                     /gene="mqo"
                     /locus_tag="JN125_001344"
     CDS             13450..15096
                     /gene="mqo"
                     /locus_tag="JN125_001344"
                     /EC_number="1.1.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase (quinone)"
                     /protein_id="HAY8871177.1"
                     /translation="MKKVTAMLFSMAVGLNAVSMAAKAKASEEQETDVLLIGGGIMSA
                     TLGTYLRELEPEWSMTMLERLEGVAQESSNGWNNAGTGHSALMELNYTPQNADGSISI
                     EKAVAINEAFQISRQFWAHQVERGVLRTPRSFINTVPHMSFVWGEDNVNFLRARYAAL
                     QQSSLFRGMRYSEDHAQIKEWAPLVMEGRDPQQKVAATRTEIGTDVNYGEITRQLIAS
                     LQKKSNFSLQLSSEVRALKRNDDNTWTVTVADLKNGTAQNIRAKFVFIGAGGAALKLL
                     QESGIPEAKDYAGFPVGGQFLVSENPDVVNHHLAKVYGKASVGAPPMSVPHIDTRVLD
                     GKRVVLFGPFATFSTKFLKNGSLWDLMSSTTTSNVMPMMHVGLDNFDLVKYLVSQVML
                     SEEDRFEALKEYYPQAKKEDWRLWQAGQRVQIIKRDADKGGVLRLGTEVVSDQQGTIA
                     ALLGASPGASTAAPIMLDLLEKVFGDRVSSPQWQATLKAIVPSYGRKLNGDVAATERE
                     LQYTSEVLGLKYDKPQAADSTPKPQLKPQPVQKEVADIAL"
     gene            complement(15246..15734)
                     /gene="eco"
                     /locus_tag="JN125_001345"
     CDS             complement(15246..15734)
                     /gene="eco"
                     /locus_tag="JN125_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease inhibitor ecotin"
                     /protein_id="HAY8871178.1"
                     /translation="MKTILPAVLFAAFATTSAWAAESVQPLEKIAPYPQAEKGMKRQV
                     IQLTPQEDESTLKVELLIGQTLEVDCNLHRLGGKLESKTLEGWGYDYYVFDKVSSPVS
                     TMMACPDGKKEKKFVTAYLGDAGMLRYNSKLPIVVYTPDNVDVKYRVWKAEEKIDNAE
                     VR"
     gene            complement(15869..16033)
                     /locus_tag="JN125_001346"
     CDS             complement(15869..16033)
                     /locus_tag="JN125_001346"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871179.1"
                     /translation="MHTPIGVKPVAGSKEWREAWQKRAFAHISNGYKHIYIAINSPEI
                     FLLVCSLIRI"
     gene            16142..16636
                     /gene="napF"
                     /locus_tag="JN125_001347"
     CDS             16142..16636
                     /gene="napF"
                     /locus_tag="JN125_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapF"
                     /protein_id="HAY8871180.1"
                     /translation="MKIDASRRGILTGRWRKASNGIRPPWSGDESHFLTHCTRCDACI
                     NACENNILQRGAGGYPSVNFKNNECSFCYACAQACPESLFSLRHTRAWDLQFTIGDAC
                     LAYQSVECRRCQDSCEPMAIIFRPTLSGIYQPQLNSQLCNGCGACAASCPVSAITAEY
                     LHAH"
     gene            16626..16889
                     /gene="napD"
                     /locus_tag="JN125_001348"
     CDS             16626..16889
                     /gene="napD"
                     /locus_tag="JN125_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HAY8871181.1"
                     /translation="MHTNWQVCSLVVQAKSERISDISTQLNAFPGCEVAVSDAPSGQL
                     IVVVEAEDSETLIQTIESVRNVEGVLAVSLVYHQQEEQGEETP"
     gene            16886..19372
                     /gene="napA"
                     /locus_tag="JN125_001349"
     CDS             16886..19372
                     /gene="napA"
                     /locus_tag="JN125_001349"
                     /EC_number="1.7.99.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HAY8871182.1"
                     /translation="MKLSRRSFMKANAVAAAAAAAGLSVPGVARAVVGQQEAIKWDKA
                     PCRFCGTGCGVLVGTQQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLL
                     RMKNGKYDKEGEFTLITWDQAFDVMEEKFKTALKEKGPESIGMFGSGQWTIWEGYAAS
                     KLFKAGFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGANMAE
                     MHPILWSRITNRRLSNQNVTVAVLSTYQHRSFELADNGIIFTPQSDLVILNYIANYII
                     QNNAINQDFFSKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVA
                     EYTLEKTAEMTGVPKDQLEQLAQLYADPNKKVISYWTMGFNQHTRGVWANNLVYNLHL
                     LTGKISQPGCGPFSLTGQPSACGTAREVGTFAHRLPADMVVTNEKHRDICEKKWNIPS
                     GTIPAKIGLHAVAQDRALKDGKLNVYWTMCTNNMQAGPNINEERMPGWRDPRNFIIVS
                     DPYPTVSALAADLILPTAMWVEKEGAYGNAERRTQFWRQQVQAPGEAKSDLWQLVQFS
                     RRFKTEEVWPEDLLAKKPELRGKTLYEVLYATPEVSKFPVSELAEDQLNDESRELGFY
                     LQKGLFEEYAWFGRGHGHDLAPFDDYHKARGLRWPVVNGKETQWRYSEGNDPYVKAGE
                     GYKFYGKPDGKAVIFALPFEPAAEAPDEEYDLWLSTGRVLEHWHTGSMTRRVPELHRA
                     FPEAVLFIHPLDAKARDLRRGDKVKVVSRRGEVISIVETRGRNRPPQGLVYMPFFDAA
                     QLVNKLTLDATDPLSKETDFKKCAVKLEKV"
     gene            19379..20074
                     /gene="napG"
                     /locus_tag="JN125_001350"
     CDS             19379..20074
                     /gene="napG"
                     /locus_tag="JN125_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HAY8871183.1"
                     /translation="MSRSAKPQNGRRRFLRDVVRTAGGLAAVGVALGLQQQTARASGV
                     RLRPPGAINENAFASACVRCGQCVQACPYDTLKLATLASGLSAGTPYFVARDIPCEMC
                     EDIPCAKVCPSGALDREIESIDDARMGLAVLVDQENCLNFQGLRCDVCYRECPKIDEA
                     ITLELERNTRTGKHARFLPTVHRDACTGCGKCEKVCVLEQPAIKVLPLSLAKGELGHH
                     YRFGWLEGNNGKS"
     gene            20061..20924
                     /gene="napH"
                     /locus_tag="JN125_001351"
     CDS             20061..20924
                     /gene="napH"
                     /locus_tag="JN125_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HAY8871184.1"
                     /translation="MANRKRDAGREALEKKGWWRSHRWLVLRRLCQFFVLGMFLSGPW
                     FGVWILHGNYSSSLLFDTVPLTDPLMTLQSLASGHLPATVALTGAVIITVLYALAGKR
                     LFCSWVCPLNPITDLANWLRRRFDLNQSATIPRHIRYVLLVVILLGSALTGTLIWEWI
                     NPVSLMGRSLVMGFGSGALLILALFLFDLLVVEHGWCGHICPVGALYGVLGSKGVITV
                     AATDRQKCNRCMDCFHVCPEPRVLRAPVLDEQSPVQVTSRDCMTCGRCVDVCSEDVFT
                     ITTRWSSGAKS"
     gene            20921..21370
                     /gene="napB"
                     /locus_tag="JN125_001352"
     CDS             20921..21370
                     /gene="napB"
                     /locus_tag="JN125_001352"
                     /EC_number="1.9.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311119.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HAY8871185.1"
                     /translation="MKSHDLKKALCQWTAMLALVVSGAVWAANGVDFSQSPEVSGTQE
                     GAIRMPKEQERMPLNYVNQPPMIPHSVEGYQVTTNTNRCLQCHGVESYRTTGAPRISP
                     THFMDSDGKVGAEVAPRRYFCLQCHVPQADTAPIVGNTFTPSKGYGK"
     gene            21380..21982
                     /gene="napC"
                     /locus_tag="JN125_001353"
     CDS             21380..21982
                     /gene="napC"
                     /locus_tag="JN125_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type protein NapC"
                     /protein_id="HAY8871186.1"
                     /translation="MGNSDRKPGLIKRLWKWWRTPSRLALGTLLLIGFVGGIVFWGGF
                     NTGMEKANTEEFCISCHEMRNTVYQEYMDSVHYNNRSGVRATCPDCHVPHEFVPKMIR
                     KLKASKELYGKIFGVIDTPQKFEAHRLTMAQNEWRRMKDNNSQECRNCHNFEYMDTTA
                     QKSVAAKMHDQAVKDGQTCIDCHKGIAHKLPDMREVEPGF"
     gene            22001..22618
                     /gene="ccmA"
                     /locus_tag="JN125_001354"
     CDS             22001..22618
                     /gene="ccmA"
                     /locus_tag="JN125_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001300065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis heme-transporting ATPase
                     CcmA"
                     /protein_id="HAY8871187.1"
                     /translation="MLEARELLCERDERTLFSGLSFTLNAGEWVQITGSNGAGKTTLL
                     RLLTGLSRPDAGEVLWQGQPLHQVRDSYHQNLLWIGHQPGIKTRLTALENLHFYHRDG
                     DTAQCLEALAQAGLAGFEDIPVNQLSAGQQRRVALARLWLTRATLWILDEPFTAIDVN
                     GVDRLTQRMAQHTEQGGIVILTTHQPLNVAESKIRRISLTQTRAA"
     gene            22615..23277
                     /gene="ccmB"
                     /locus_tag="JN125_001355"
     CDS             22615..23277
                     /gene="ccmB"
                     /locus_tag="JN125_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmB"
                     /protein_id="HAY8871188.1"
                     /translation="MMFWRIFRLELRVAFRHSAEIANPLWFFLIVITLFPLSIGPEPQ
                     LLARIAPGIIWVAALLSSLLALERLFRDDLQDGSLEQLMLLPLPLPAVVLAKVMAHWM
                     VTGLPLLILSPLVAMLLGMDVYGWQVMALTLLLGTPTLGFLGAPGVALTVGLKRGGVL
                     LSILVLPLTIPLLIFATAAMDAASMHLPVDGYLAILGALLAGTATLSPFATAAALRIS
                     IQ"
     gene            23319..24056
                     /gene="ccmC"
                     /locus_tag="JN125_001356"
     CDS             23319..24056
                     /gene="ccmC"
                     /locus_tag="JN125_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmC"
                     /protein_id="HAY8871189.1"
                     /translation="MWKTLHQLAIPPRLYQICGWFIPWLAIASVVVLTVGWIWGFGFA
                     PADYQQGNSYRIIYLHVPAAIWSMGIYASMAVAAFIGLVWQMKMANLAVAAMAPIGAV
                     FTFIALVTGSAWGKPMWGTWWVWDARLTSELVLLFLYVGVIALWHAFDDRRLAGRAAG
                     ILVLIGVVNLPIIHYSVEWWNTLHQGSTRMQQSIDPAMRSPLRWSIFGFLLLSATLTL
                     MRMRNLILLMEKRRPWVSELILKRGRK"
     gene            24053..24262
                     /gene="ccmD"
                     /locus_tag="JN125_001357"
     CDS             24053..24262
                     /gene="ccmD"
                     /locus_tag="JN125_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme exporter protein CcmD"
                     /protein_id="HAY8871190.1"
                     /translation="MTPAFASWNEFFAMGGYAFFVWLAVVMTVIPLVVLVVHSVMQHR
                     AILCGVEQQRAREARLRAAQQQEAA"
     gene            24259..24738
                     /gene="ccmE"
                     /locus_tag="JN125_001358"
     CDS             24259..24738
                     /gene="ccmE"
                     /locus_tag="JN125_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c maturation protein CcmE"
                     /protein_id="HAY8871191.1"
                     /translation="MNIRRKNRLWIACAVLAGLALTIGLVLYALRSNIDLFYTPGEIL
                     YGKRETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILPDL
                     FREGQGVVVQGELEKGNHILAKEVLAKHDENYTPPEVEKAMEANHRRPASVYKDPAS"
     gene            24735..26678
                     /locus_tag="JN125_001359"
     CDS             24735..26678
                     /locus_tag="JN125_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HAY8871192.1"
                     /translation="MMPEIGNGLLCLALGIALLLSVYPLWGVARGDARMMASSRLFAW
                     LLFMSVAGAFLVLVNAFVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLL
                     MSGWTFAVAIFSQRIPLDIVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRD
                     LNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIF
                     LTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWT
                     LLLAISAFSLCLLGTFLVRSGVLVSVHAFASDSARGMFILAFMVLVIGGSLLLFAARG
                     HKVRSRVNNALWSRESLLLANNVLLVAAMLVVLLGTLLPLVHKQLGLGSISIGEPFFN
                     TMFTWLMVPFALLLGVGPLVRWGRDRPRKIRNLLIIAFISTLVLSLLLPWLFESKVVA
                     MTVLGLAMACWIAVLAIAEAALRISRGTKTTFSYWGMVAAHLGLAVTIVGIAFSQNYS
                     VERDVRMKSGDSVDIHEYRFTFRDVKEVTGPNWRGGVATIGVTREGKPETVLYAEKRY
                     YNTAGSMMTEAAIDGGITRDLYAALGEELENGAWAVRLYYKPFVRWIWAGGLMMALGG
                     LLCLFDPRYRKRVSPQKTAPEAV"
     gene            26675..27232
                     /gene="dsbE"
                     /locus_tag="JN125_001360"
     CDS             26675..27232
                     /gene="dsbE"
                     /locus_tag="JN125_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbE"
                     /protein_id="HAY8871193.1"
                     /translation="MKRKVLLIPLIIFLAIAAALLWQLARNAEGDDPTNLESALIGKP
                     VPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVG
                     MNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHA
                     GDLNPRVWEEEIKPLWEKYSKEAAQ"
     gene            27229..28281
                     /locus_tag="JN125_001361"
     CDS             27229..28281
                     /locus_tag="JN125_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c-type biogenesis protein CcmH"
                     /protein_id="HAY8871194.1"
                     /translation="MRFLLGVLMLMISGSALATIDVLQFKDEAQEQQFRQLTEELRCP
                     KCQNNSIANSNSMIATDLRQKVYELMQEGKSKKEIVDYMVARYGNFVTYDPPLTPLTV
                     LLWVLPVVAIGIGGWVIYARSRRRVRVVPDAFPEQSVPEGKRAGYIVYLPGIVVALIV
                     AGVSYYQTGNYQQVKIWQQATAQAPALLDRALDPKADPLNEEEMSRLALGMRTQLQKN
                     PGDIEGWIMLGRVGMALGNASIATDAYATAYRLDPKNSDAALGYAEALTRSSDPNDNR
                     LGGELLRQLVRTDHSNIRVLSMYAFNAFEQQRFGEAVAAWEMMLKLLSANDTRRAVIE
                     RSIAQAMQHLSPQESK"
     gene            complement(28316..28963)
                     /gene="narP"
                     /locus_tag="JN125_001362"
     CDS             complement(28316..28963)
                     /gene="narP"
                     /locus_tag="JN125_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite response regulator protein NarP"
                     /protein_id="HAY8871195.1"
                     /translation="MPEATPFQVMIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASA
                     IDLANRLDIDVILLDLNMKGMSGLDTLNALRRDGVTAQIIILTVSDASSDVFALIDAG
                     ADGYLLKDSDPEVLLEAIRAGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTERELD
                     VLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATILFLQQRGAQ"
BASE COUNT         6652 a         7196 c         8076 g         7211 t
ORIGIN      
        1 actactatgg tgggcgcagc gaaacggaat taaccaccgc ccaactgacg ctgatcaccg
       61 atgaaggatc ggtcaatgag aaacaggaaa catttattgt accgatgcgt aatgctggcg
      121 agctgacgct ggtgaaaagt tttgactggt gatccatccc ttcacacaac ctggctctct
      181 cttttttcag ataagactgc tgggcgatct gccgacgcca ggatataacc attaacaagc
      241 gtcggcagat tggtcatttc ttatttttcg tactgagaac tgtccatcta ctccggcttt
      301 cctggttaag gcaatggttt ctaagcgata cgcattattg caataatgac agaacattgc
      361 ggtaacacgc ttttaccgct accttaacca cactccatcg gtcacctgag gcggagcttc
      421 gcccctttga aataccttgc ttcttttcgt acaaccctga aagcctcgcg ctacatgttc
      481 agagcattgg cgttagtgct ctggctgttg attgcttttt catccgtttt ttacatcgtt
      541 aatgcgttac atcagcgaga atcggaaatt cgtcaggaat ttaatctgag ttccgatcag
      601 gctcagcgct ttattcaacg cacctctgat gtgatgaaag agctgaagta catcgccgaa
      661 aatcgcttat cggcagaaaa cggtgtgctt tccccgcgtg gacgagaaac gcaggcggat
      721 gtgcctgcgt ttgaaccgct gtttgccgac tccgattgtt ccgcaatgag taacacctgg
      781 cgaggttctc tggagtcatt ggcgtggttt atgcgctact ggggcgataa tttttctgcg
      841 gcttacgatc taaaccgggt atttttaatc ggcagcgata acctctgcat ggccaatttc
      901 ggtctgcgtg atatgccagt ggaacgcgat accgcgttga aagctttgca tgaacgcatc
      961 aataaatatc gaaatgcacc acaagatgat agcggcagta acctctactg gatcagcgaa
     1021 ggtccgcgcc ctggcatcgg gtatttttac gcgttgacgc cagtttatct ggcgaaccgg
     1081 ttgcaggcgc ttttgggggt cgagcagacc atccggatgg agaacttttt cttaccgggt
     1141 acgttgccga tgggggttac cattcttgat gaaaatggtc ataccctgat ttcgcttacc
     1201 ggaccagaaa gtaaaattaa gggcgatcct cgctggatgc aggaacgctc ctggtttggc
     1261 tatacggaag ggttccggga gctggtgctg aagaaaaatc tgccaccctc atcgctaagc
     1321 atcgtgtatt cggtgccggt tgataaggtg cgggaacgca ttcgcatgtt gatccttaac
     1381 gcaattttgc tgaatgtgct tgccggagct gcattgttta ctctcgcacg gatgtacgag
     1441 cgacgtattt tcattccggc ggaaagcgac gccctgcgac tggaagaaca tgagcagttc
     1501 aatcgcaaga ttgtcgcctc cgcgccagtg ggtatctgca ttttgcgtac cgctgatggc
     1561 gtcaatattt taagtaacga actggcgcat acctatctca atatgcttac gcatgaggac
     1621 cgccaacgac tgacgcaaat tatctgtggg cagcaggtca attttgttga tgtcctgacc
     1681 agcaacaata ccaatctgca aatcagcttc gtccattcgc gctatcgtaa tgaaaacgtg
     1741 gccatttgtg tgctggtgga tgtttcttcg cgcgtgaaga tggaagagtc gttgcaggag
     1801 atggcacaag cagcggaaca ggcgagccag tcaaaatcga tgttccttgc caccgtcagt
     1861 catgagctgc gaacgccgct gtatggcatt atcggtaacc tggatctgtt gcaaaccaaa
     1921 gagttaccga aaggcgtcga tcggctggtg acggcaatga acaactcttc cagcctgttg
     1981 ttgaaaatta tcagcgatat tctcgatttc tcgaagattg aatcggaaca gttgaagatc
     2041 gaaccgcgtg agttttcacc gcgtgaagtg atgaaccaca tcaccgccaa ctatttaccg
     2101 ctggtggtac gcaagcagtt aggcttgtac tgctttattg aaccggatgt gccagtggcc
     2161 ttaaatggcg acccgatgcg tttacagcag gtcatctcca acctgttgag taacgccata
     2221 aaattcaccg ataccggctg tatagttttg catgtccgcg ctgatggcga ttatctctct
     2281 atccgtgttc gcgataccgg cgtggggatt ccggcgaaag aagtggtgcg cttgtttgat
     2341 cccttcttcc aggtcggaac gggcgtacag cgaaacttcc aggggaccgg tctgggtctg
     2401 gcgatttgtg aaaaactgat cagcatgatg gacggcgata tctcggtaga ttcagaaccg
     2461 ggaatgggca gccagtttac cgtgcgtatt ccgttgtacg gcgctcagta cccgcagaaa
     2521 aaaggcgtgg aagggttgag tggtaaacgc tgctggctgg cggtccgcaa tgcgtcgctc
     2581 tgtcagttcc tggaaactag tttgcagcgc agcggcatcg tcgttacaac atacgaaggg
     2641 caggaaccga ctcccgaaga tgtgttaatt actgacgagg tagtgagtaa aaaatggcag
     2701 ggtagagcgg tagtgacctt ctgtcgtcgc catattggta ttccgctgga gaaagcgcca
     2761 ggggagtggg tacacagtgt ggctgccccg catgagctac cggcattgtt ggcgcgtatt
     2821 tatttgatcg agatggagag cgacgatcct gctaacgctc tgccgtcgac ggacaaagcg
     2881 gtcagcgata atgacgatat gatgattctg gtcgtggatg atcatccgat taaccgacgt
     2941 ctgctggcag atcagttggg atcgttgggc tatcaatgta aaaccgcgaa tgatggtgtc
     3001 gatgcgctta atgtacttag caagaatcat attgatatcg tgcttagcga cgtcaacatg
     3061 ccaaatatgg atggttaccg cttgacgcaa cgcattcgtc agttgggact gacgttgccg
     3121 gtaatcggag taactgctaa tgcgttggct gaagagaagc agcggtgtct ggagtccggt
     3181 atggacagct gcctgtcgaa gccggtaacg ctggatgtga taaaacagac gctgacggta
     3241 tatgccgaga gggtcaggaa atcgcgggaa tcgtaggacg gataaggtgt ttatgtcgca
     3301 tctggcattc agtgcaaatg ccagatgcga cgctgacgcg tcttatctgg cctacaggtg
     3361 attagtcttt atctgccgga cttaacgtca ctgaagagag ataattcagc agggcgatat
     3421 cgttctcgac acccagcttc atcatcgcag atttcttctg gctactgatg gttttaatac
     3481 tgcggttcag ctttttagcg atctcggtca ccaagaagcc ttccgcaaac aggcgcagaa
     3541 cttcactctc ttttggcgag agacgcttgt caccgtaacc accagcactg attttttcca
     3601 acaggcgaga aacgctttcc ggggtaaatt tcttcccttt ctgcagcgcg gcgagagctt
     3661 tcggcagatc ggtcggtgca ccttgtttca gcacgatccc ttcgatatcc agatccaata
     3721 ccgcactaag aatcgccggg ttgttgttca tagtcagaac aatgatcgac aggcttggga
     3781 aatggcgctt gatgtacttg attaaggtaa tgccatcgcc gtacttatcg ccaggcatgg
     3841 agagatcggt aatcaacaca tgcgcatcca gtttcggcag gttgttgatc agtgctgtag
     3901 agtcttcaaa ttcgccgaca acattcaccc actcaatttg ctcaagtgat ttgcgaatac
     3961 cgaacaagac tatcggatgg tcatcggcaa taattacgtt catattgttc atgtaatagg
     4021 ctaccttgct acagcaagct cttgacataa ctgtcaatgt cgctgatgta tttttctatt
     4081 cctggaacat ccttctcacg aatcagatgt tccagcgttt cacataactg cttgccgggt
     4141 accagattta gcatggcaaa tacgccttta agacgatgag ccgtttgggc taacgcagca
     4201 aagtcactgg ttgctgcttc agtatacagc ctcttaacat catccggtac tgtgtctaca
     4261 aagagcgcat aatagccgct ggcatggagt tgcgcatttt catctccgcc cagaggcgat
     4321 tctgtcacct cttcctgcgc cagttgcact tcaattaatt gtaagaccgc ttcctgcata
     4381 gcgttgctca tattgaagtt gacgcacaat tgaccaggcc caatttctcg tacgccagac
     4441 tcatcatcgc ttaaaagcaa gccagaggca gtaagattag acggattatc cgttaaaaag
     4501 atatcataat cttgactaat taatctttca tcgggtgtga tacaggttgc accccaattt
     4561 tctaactggc gagtgacaat attccgaatt tctgccgaag taacatccac cattacgcag
     4621 acatcatcca gtaaacgctc ttcttcctct tcaacttccg ggtcagcggc gagcattttg
     4681 atatgcacag agtagcgtgt accaagccca tcccgcgttt tgatgtttaa atgaccgccc
     4741 agtttacgcg ccagttgatc gctcagccag aatgccagcg ggtccgcctt gccatagcga
     4801 tcgttttggg gctggttgat aaacgggaag tgcaaattat ccatttcatg aatacttacg
     4861 ccttctcccg tgtccagaat gcggaatgtc aggcggtctt cagaggactc atcctgatca
     4921 acctcaaggg tgatttttcc caattgcgtt gaggtcacgg catattgcat cagtagcagc
     4981 aaaatacgtc gtaaggcatc gcgatcgccg cggcgcatat cgtgtgcttt cagatgattg
     5041 ttaatcagca gttgcagacc tttacgcttg atggcaggca acactgaagg cacaacttca
     5101 tcaattaaat cctgcacgga gaacagcacc gtctcacttt tccagctatc gtccgcaagc
     5161 atgttcgcta actgtatttc atcgaccagc cgcaccagca catctgcctg attcgccagt
     5221 tgtttgcttt ccggggcgtt gagtttagcc gcgctctccg ccagggactg tgcgggttct
     5281 ttcagcgcat cgccaatgtt tttcataaag gtcatccgcc cctgctggtt tttctcatac
     5341 agacgctgcg cctgcttgag tttcttgttt accagcactt cgcgatcctg atcgcgaata
     5401 atgaaaattt gtgtgcgcgg cgcgacctgg ctgcggaaca tgcggatctc atacagctcg
     5461 ttattgatcg tcgcctgaat aatcccctga tgctgttccg ccatggtggt gatgttttgc
     5521 agattcaaat gcggcagcaa atgatcggca attttgttac ttatgacagt gcggttcgat
     5581 tcctgatcgt gaaccagcag gccgagcggc agcagtgaga ctatctcttc attaattgcc
     5641 cgtaaaatgc gcaattcgtt attgaccgcc gtgctgggta gactttctgt actgcggctg
     5701 gagaaatggc ggaatgtggt atagccaaat aacgccagcg ccagcaaacc gatgttcagc
     5761 agcagtggca gcagaatgtt ttgcaacgta tccagcaata aggtgccata aggaacctgc
     5821 cagaccaggc gcacatcggt agagttgagt gccgaggaga tttcaatctt cgtactgtta
     5881 aagtggatac tgacgctatc cgtcccttct ttctcattat cattgtctcc cgttgccgtc
     5941 gcgtctggct caaggcggaa actgtccagc ggcatacccg gtgggatcaa atcattaatc
     6001 ggtagatcaa aagctacgac cgttgccaga tgtcccggct ggttgaacgt ggtacgcaag
     6061 gtaaagtaat gaccgttctg ccaggccagg cggcgcatgt tagaaaaact ttcgcgttca
     6121 tcgagggcgt tggcctgttg caacatctct gcacgacgtg aatcaacaat gtcgctgacg
     6181 gtcgattctt taaatccgga ggtgagatct ttgaggggca gggttgagat cagcaccaga
     6241 ctgttatcct gaccattcag gtaatacatc gaccacggta cattttctgc gccccacaat
     6301 gtgtccagat aggtggacat ccgctgagtc atctcaagcg ttgagttgtc gtgagagcca
     6361 aagattaacg cttccgtttt gcggcgcggt ttctccagat agtagacatc ctgtttcagg
     6421 aaaccttcgc cggaggaggg ggaggtcgtc gcggcaatgt tgtcgtagat ctgccaggtc
     6481 acgtaacgcc aggtattgac gcgcttttgg atagcgtggg taatgtcgac aatctggtaa
     6541 cttttatctt tcagccatgc gttaacggcg ctttgtacca ttacacccat cgtcaccagt
     6601 aacacaatga tcaacagtaa aaagaagcgg gtaatgctcc ccggtaggag tgaaaagcgg
     6661 gtcgtggccg ttgtctcttt ctgacgcatt cgtgtttatg atctgttaaa acttcgcgaa
     6721 gtgatagggc agtataaagg gtacagtgtg aaattccaga ctcttacctg attgatgatt
     6781 ctctattctc ccgtgatatt tatcatcctg cattggggga aatagatgta caagctccat
     6841 tttgctgtac aaataaccta caaaaagccc aacgaaatta attgcaaata aacgatgatt
     6901 gctggaaatt atgctgatgt taattatttg tgaaatagtt aacaagcgtt atagtttttc
     6961 tgtggtagca cagaataatg aaaagtgtgt aaagaagggt aaaaaaaacc ggatgcgagg
     7021 catccggttg aaataggggt aaacagacat tcagaaatga atgacggtaa taaataaagt
     7081 taatgatgat agcgggagtt attctagttg cgagtgaagg ttttgttttg acattcagtg
     7141 ctgtcaaata cttaagaata agttattgat tttaaccttg aattattatt gcttgatgtt
     7201 aggtgcttat ttcgccattc cacaataatc ttaaaaagtt cccttgcatt tacattttga
     7261 aacatctaca gcgataaatg aaacatctta aaggttttag tatcatattc gtgttggatt
     7321 attctgcatt tttggggaga atggacttgc cgactgatta atgagggtta atcagtatgc
     7381 agtggcataa aaaagcaaat aaaggcatat aacagagggt taataacatg aaagttaaag
     7441 tactgtccct cctggtccca gctctgctgg tagcaggcgc agcaaacgct gctgaagttt
     7501 acaacaaaga cggcaacaaa ttagatctgt acggtaaagt agacggcctg cactatttct
     7561 ctgacaacaa gtcagaagac ggcgaccaga cctatgtacg tcttggtttc aaaggcgaaa
     7621 ctcaggttac tgaccagctg accggttacg gccagtggga atatcagatc cagggcaata
     7681 cctctgaaga caacaaagaa aactcctgga cccgtgtggc attcgcaggt ctgaaattcc
     7741 aggatgtagg ttctttcgac tacggtcgta actacggcgt tgtttacgac gtaacttcct
     7801 ggaccgacgt actgccagaa ttcggtggcg acacctacgg ttctgacaac ttcatgcagc
     7861 agcgtggtaa cggcttcgcg acctaccgta acaccgactt cttcggtctg gttgacggtc
     7921 tgaactttgc tgttcagtac cagggcaaaa acggtagcgt aagcggcgaa ggcatgacca
     7981 acaacggtcg tggcgctctg cgtcagaacg gcgacggtgt cggcggttct atcacttatg
     8041 attacgaagg cttcggtatc ggtgctgcag tttccagctc caaacgtact gatgatcaaa
     8101 atggtagcta catcagcaat ggtgtagttc gtaactacat cggtactggc gaccgtgctg
     8161 aaacctacac tggtggtctg aaatacgacg ctaacaacat ctacttggct gctcagtaca
     8221 cccagaccta caacgcaact cgcgtaggtt ccctgggttg ggcgaacaaa gcacagaact
     8281 tcgaagctgt tgctcagtac cagttcgact tcggtctgcg tccgtctgta gcatacctgc
     8341 agtctaaagg taaaaacctg ggtgtcatca atggtcgtaa ctacgacgac gaagatatcc
     8401 tgaaatatgt tgatgttggc gcgacctact acttcaacaa aaacatgtcc acctatgttg
     8461 actacaaaat caacctgctg gacgacaacc agttcactcg tgacgctggc atcaacactg
     8521 ataacatcgt agctctgggt ctggtttacc agttctaatc tcgattgata tcgaaaaaag
     8581 ggcctgcggg cccttttttc attgttttca gcgtacaaac tcagtttttt ggtgtactct
     8641 tgcgaccgtt cgcatgagga taatcacgta tggaaataag ctttacccgc gtggcactgc
     8701 tggctgccgc gctcttcttt gttggttgcg atcaaaaacc acaacccgcc aaaacccacg
     8761 ctactgaagt taccgttctt gaaggcaaaa ccatgggtac cttctggcgt gccagcatcc
     8821 cgggcattga tgccaaacgc agtgccgaac ttaaagaaaa gattcagacc cagctggacg
     8881 ccgacgatca gctgctttcg acctataaaa aagattccgc gctgatgcgc tttaacgact
     8941 cgcaaagttt gtcgccgtgg ccagtaagtg aagcgatggc cgaaatcgtc actacctcgc
     9001 tgcgcattgg cgcgaagacc gatggtgcga tggatattac cgtcgggccg ctggtaaatc
     9061 tgtggggctt tggcccggaa caacagccgg ttcaaattcc gagccaggaa cagatcgacg
     9121 agatgaaagc caaaactggt ttacagcacc ttacggtcat taatcagtcg catcagcaat
     9181 atctgcaaaa agacctgccg gatttatatg tcgatctctc taccgtcggc gaaggttatg
     9241 cggcggatca cttggcacgc ttgatggagc aggaagggat ttcccgctat ctggtgtcgg
     9301 tgggcggcgc gctgaacagc cgtggtatga acggtgaagg cctgccgtgg cgggtagcga
     9361 ttcaaaaacc aaccgataaa gaaaacgcag ttcaggctgt ggtggatatc aacggtcatg
     9421 ggattagcac ctctggcagc taccgtaact attacgaact ggacggcaaa cgtctttctc
     9481 atgttatcga tccgcaaacc gggcgtccca tcgaacacaa tctggtatcc gtgacggtga
     9541 ttgctccgac ggcgctggaa gccgatgcct gggatactgg cttgatggta ctcgggccgg
     9601 agaaagccaa agaggttgtt cgccgggaag ggctggcggt ttatatgatc accaaagaag
     9661 gcgatagctt taaaacctgg atgtcaccac agtttaaaag cttccttgtc agcgaaaaaa
     9721 attaaagcgc aagattgttg gtttttgcgt gatggtgacc gggcagacta aaggctatcc
     9781 ttaaccaggg agctgattat gaaaaacgcc acatgcttaa ctgacgatca acgctggcaa
     9841 tctgtcttag cccgcgaccc gaatgccgac ggcgaattcg ttttcgccgt gcgcaccaca
     9901 ggcatctttt gccgtccgtc ttgccgcgcc agacatgcct tgcgggaaaa tgtctccttc
     9961 tacgcaaatg ccagcgaggc actcgccgcc ggatttcgcc cctgcaaacg ctgccaacct
    10021 gataaagcca atgcccagca acatcggttg gataaaatca cccacgcgtg tcgactgctg
    10081 gaacaggaaa cgcctgtaac gttggaagcc ttagccgacc aggtggcgat gagtccattt
    10141 catctacatc ggttgtttaa agcgactacc ggaatgacgc ctaaagcctg gcaacaggcc
    10201 tggcgcgctc gccgtttgcg cgaatcgctg gcgaaagggg agagcgtgac gacgtctatt
    10261 cttaacgccg gattccccga cagcagcagt tactaccgca aagccgatga aacgctgggc
    10321 atgacggcta aacaattccg tcacggtggc gaaaatctgg cggtgcgtta cgcgctggct
    10381 gattgtgcgc tgggtcgttg cctggtggca gaaagcgagc gggggatttg cgcgatattg
    10441 ctgggcgatg atgacgcgac attaatcagc gagttgcagc agatgtttcc cgctgccgac
    10501 aacgcgcctg ccgatctgac gtttcagcaa catgtgcgtg aagtgatcgc cagcctcaat
    10561 caacgcgata cgccgctgac gttaccgctg gatattcgcg gcactgcttt tcagcaacaa
    10621 gtctggcagg cactgcgcac gataccttgc ggtgaaaccg tcagttatca gcaactggct
    10681 aacgccatcg gcaaaccgaa agcggtacgg gccgttgcca gcgcctgtgc cgccaacaag
    10741 ctggctatcg taataccctg tcatcgagtg gtccgtggtg atggcacact ttccggttac
    10801 cgctggggcg tgtcgcgtaa agcgcaactg ctgcgccgcg aagctgaaaa tgaggagagg
    10861 taatgttgga tctgtttgcc gatgctgaac cgtggcaaga gccactggcg gctggtgcgg
    10921 taattttacg gcgttttgct tttaacgctg cggagcaact gatccgcgat attaatgacg
    10981 ttgccagcca gtcgccgttt cgccagatgg tcacccccgg gggatatacc atgtcggtgg
    11041 cgatgaccaa ctgtgggcat ctgggctgga cgacccatcg gcaaggttat ctctattcgc
    11101 ccattgatcc gcaaacaaat aaaccgtggc ccgccatgcc acaaagcttt catgatttat
    11161 gtcaacgtgc ggctacggcg gcgggctatc cagatttcca gccagatgct tgtcttatca
    11221 accgctacgc tcctggcgcg aaactgtcgc tgcatcagga taaagacgaa ccggatctgc
    11281 gcgcgccaat tgtttctgtt tctctgggct tacccgcgat ttttcaattt ggtggcctga
    11341 aacgtaatga tccgctcaaa cgtttgttgt tggaacatgg cgatgtggtg gtatggggcg
    11401 gtgaatcgcg gctgttttat cacggtattc aaccgttgaa agcggggttt catccactca
    11461 ccaccgactg ccgctacaac ctgacattcc gtcaggcagg taaaaaagaa taaaaataag
    11521 aattattatt gctgtgcgcg cgaagatgtt taaactgcgg gctgtaattc attgtccggg
    11581 ttttctgcat ggaacttctt gtacttgtct ggcggcagta tcgctggcca tttatcagtg
    11641 tgatggcgct aagcctcgcc agtgcggcat taggcattgg cttaattgct tttatcaatc
    11701 agcgccttat cgaaatggcg gataccagtc tgctggtatt gccggagttt ctgggattat
    11761 tgctgctgtt gatggcagtc actctcggat cgcaactggc gctcaccact ttggggcatc
    11821 acttcgttta ccgactgcgt agtgaattta tcaagcggat tctggatacc cacgtcgagc
    11881 gcattgaaca actcggtagc gcctcgttgc tggcgggatt aaccagcgat gtgcgcaata
    11941 tcaccattgc ttttgtgcgt cttccggaac tggtgcaggg gatcattctc actatcggtt
    12001 ccgcggcgta tctgtggatg ctgtcgggca aaatgttgct ggtaacggct atctggatgg
    12061 cgatcaccat ctggggtggt tttgtactgg tggcgcgggt gtacaaacat atggcgaccc
    12121 tacgtgaaac cgaagacaag ctgtacacgg attttcaaac tgtacttgaa gggcgcaaag
    12181 agctgactct gaaccgggaa cgcgccgagt atgtgtttaa caacctctac atccccgatg
    12241 cgcaagagta tcgccatcat attattcgcg cagacacctt ccatcttagt gccgtgaact
    12301 ggtcaaacat catgatgctg ggcgctatcg gcctggtgtt ctggatggcg aacagtctcg
    12361 gttgggctga taccaacgtt gctgcgacct attcgttgac gcttttattc ctgcgtacgc
    12421 cgctgctttc ggcggttggc gcattgccga cgctgctgac ggcgcaggtg gcgtttaaca
    12481 agctgaacaa attcgcgctc gcgcctttca aagcagagtt tccgcgcccg caggcgtttc
    12541 ccaactggca aacgctggag ctgcgtaatg tgacgtttag ctatcaggat aacgcgtttt
    12601 ccgttggtcc gattaatctc accatcaaac gtggcgagct actgtttctg attggtggta
    12661 acggtagtgg aaaatcgacg ctggcgatgt tgttgacggg cttgtatcag ccacaaagcg
    12721 gcgaaatctt gctggatggc aaacctgtca gcggcgaaca accggaagat tatcgcaaac
    12781 tgttttcggc agtgtttacc gatgtctggc tgtttgatca actgctgggg ccggagggta
    12841 aacccgctaa cccgcaactg gttgagaagt ggctggcgca gctgaaaatg gctcataagc
    12901 ttgagttaag caacgggcgt attgttaacc tgaagttatc aaaagggcag aaaaaacgcg
    12961 tggcgctgtt gctggcgctg gcagaagaac gcgatattat cctgctggat gaatgggcgg
    13021 cggatcagga tccacacttc cgtcgtgagt tttatcaggt gttgctgccg ctgatgcagg
    13081 agatgggtaa aactattttc gctatcagtc atgatgatca ttactttatc cacgccgacc
    13141 gcctgctgga aatgcgcaat gggcaactta gcgagctgac gggcgaagag cgcgatgccg
    13201 cttcgcgtga tgccgttgcc cggacggcat aatattacga cgctgacctg gcggactgct
    13261 gccgtcaggt caatatgcta aaaatccctt catttctaat aaccctataa ttaatcaacg
    13321 aaattataat gtttctaaaa ttagaatata atttataaac attatttaaa tgttgttact
    13381 taagtgttac ctttgatgcc gcgcaaatct cacctgcaat aaagcgacta aaagtaaggc
    13441 attaacaaga tgaaaaaagt gactgccatg ctcttctcga tggccgtggg gcttaatgcc
    13501 gtttcgatgg cggcaaaagc gaaagcgtcc gaggagcagg aaactgatgt actgttgatt
    13561 ggcggcggca ttatgagcgc cacgttgggg acctatttac gcgagctgga gcctgaatgg
    13621 tcgatgacca tgctggagcg cctggagggt gtcgcgcagg agagttcgaa cggctggaat
    13681 aacgccggaa ccgggcattc tgcactgatg gaactgaact acaccccgca aaacgccgat
    13741 ggcagtatca gtattgaaaa agcagtcgcc attaacgaag catttcagat ttcccgccag
    13801 ttctgggcgc accaggtcga gcgcggcgtg ctgcgtactc cgcgttcatt tatcaatacc
    13861 gttccgcata tgagctttgt ctggggcgag gataacgtta atttcctgcg cgcccgttac
    13921 gccgcgttgc aacaaagctc gctgtttcgc ggtatgcgtt actctgaaga tcacgcgcag
    13981 atcaaagagt gggcaccgtt agtgatggaa gggcgcgatc cgcaacagaa agtggcagcc
    14041 acgcgtacgg aaattggtac cgatgtgaac tacggcgaga tcacccgcca gttaattgct
    14101 tccttgcaga agaaatctaa cttctcgctg caactcagca gcgaagtccg cgccctaaag
    14161 cgtaatgacg ataacacctg gaccgttacc gttgccgatc tgaaaaatgg cactgcacag
    14221 aacattcgtg ccaaatttgt ctttatcggc gcgggcggtg cggcgctgaa gctgttacag
    14281 gaatcgggga ttccggaagc gaaagactac gccggtttcc cggtgggcgg acagttcctt
    14341 gtttcggaaa acccggacgt ggttaatcac catctggcga aggtttacgg taaagcatcc
    14401 gttggcgcac caccgatgtc ggttccgcat atcgataccc gcgttctgga cggtaaacgc
    14461 gtagtgctgt ttgggccatt tgccaccttc tcaaccaaat tcctcaaaaa cggttcattg
    14521 tgggatctga tgagttccac caccacctct aacgtgatgc cgatgatgca cgtcgggctg
    14581 gataatttcg atctggtgaa atatctggtg agtcaggtga tgttgagtga agaggatcgt
    14641 tttgaagcgt tgaaagagta ctatccgcag gcgaaaaaag aggactggcg tttgtggcaa
    14701 gcggggcagc gtgtgcagat tatcaagcgt gatgccgata aaggtggtgt actgcgtctg
    14761 ggtactgaag tggtcagtga ccagcaaggg accattgccg cgctcctggg agcatcgcca
    14821 ggggcgtcaa ccgccgcgcc gattatgttg gatctgctgg aaaaagtatt tggcgatcgc
    14881 gtttccagcc cgcaatggca ggctacgttg aaagcgatcg ttccgtctta tggacgcaag
    14941 ctgaacggtg atgtagcggc aacagaacgc gagttgcagt acaccagcga agtgctgggg
    15001 ctgaaatacg acaagccgca ggcagcagat agtacgccaa aaccgcagtt gaaaccgcaa
    15061 cccgttcaaa aagaagtggc ggatattgcg ttgtaatgat gtgccacatc cggcatggta
    15121 tgccggatgt ggcgtatact gataagacgc gccagcgtcg catcaggcaa ccggctcggg
    15181 cgttagatgt tggatgcggc gtaaccgcct tatccaacca acggggtgcc gtacttcaca
    15241 acagtttagc gaacttctgc gttgtcaatt ttctcttccg ccttccagac gcggtatttc
    15301 acatctacat tgtctggcgt atacaccacg atcggcagct tgctgttgta acgcagcatt
    15361 ccagcatcgc ccagatacgc ggtgacaaat ttcttctctt tcttgccatc cgggcaggcc
    15421 atcatcgtgg aaaccggcga gctaacttta tcaaagacat aataatcata gccccagcct
    15481 tccagcgttt tgctttccag cttcccgccg agacgatgca aattgcaatc gacttccagc
    15541 gtctgaccga ttaacagttc tactttcagg gtagattcat cttcttgcgg ggttaactga
    15601 atcacctgac gcttcatccc tttttcagct tgtggataag gcgcgatttt ttccagtggc
    15661 tggacgcttt ctgccgccca ggcggaagtg gtagcgaaag cggcaaacaa tactgcaggt
    15721 agaatggtct tcattttttt gctttccttc ttcatttata ggttttcacc gatgatgtcg
    15781 ctgaaggtta acatattcat aagatttatt aatttgcttt atgaataact taaagaatat
    15841 tcagacaatt ttacctgctc ttttagtgtt aaattctgat gagagaacaa accagcagaa
    15901 atatctctgg tgaattaatc gctatataaa tatgtttata accatttgaa atgtgagcaa
    15961 aagcccgttt ttgccacgct tcccgccact cttttgatcc tgctacaggt tttaccccga
    16021 tcggggtatg catctttgac acatccttta atatcttagc ggttataaaa atggcttatt
    16081 aattatgcgg tttatttggt cgctctcaat tttcagagcg cgttaatgat ggaaggtcaa
    16141 tgtgaagatt gatgcatccc gtcggggcat actcactggt cgctggcgca aagccagtaa
    16201 cggtatccgt ccgccctggt ccggtgatga atctcatttt ctgacccatt gcacccgttg
    16261 cgacgcctgt attaatgctt gtgaaaacaa cattctgcaa cgcggcgcgg gcggctatcc
    16321 gagcgttaat ttcaaaaata acgagtgcag cttctgttac gcttgcgcgc aggcttgccc
    16381 cgaatcgcta ttttctctgc gccacactag ggcctgggat ttgcagttca ccattgggga
    16441 cgcgtgcctg gcgtatcagt cagttgaatg ccgccgctgt caggatagct gtgagccaat
    16501 ggcaattatc tttcgcccga cgctctccgg gatctaccag ccgcaactta atagccaact
    16561 ttgcaacgga tgtggagcat gtgcagccag ctgtccggta tcagccataa ctgcggagta
    16621 tctccatgca cactaactgg caagtttgca gcctggtcgt gcaggccaaa agcgaacgaa
    16681 tttcagacat cagcacccaa ctgaacgcct ttcccggctg tgaagttgct gtcagcgacg
    16741 cgccgagcgg tcagttgatt gtggtggtgg aagcagaaga cagcgaaacg ctgatccaaa
    16801 ccattgagtc agtacgcaac gtagagggcg tgctggcggt gtcgctggtt tatcaccagc
    16861 aggaagagca aggtgaggaa acaccatgaa actcagtcgt cgtagcttta tgaaagctaa
    16921 cgccgttgcg gccgctgcgg cggctgccgg tctcagcgtg ccgggcgttg cccgcgccgt
    16981 tgttggtcag caggaagcca tcaaatggga taaagcgccg tgccgtttct gcggtactgg
    17041 ttgcggcgtt ctggtcggaa cgcagcaggg acgtgtggtg gcctgtcagg gcgacccaga
    17101 cgcaccggtt aaccgtggcc tgaactgcat taagggctat ttcctgccca agatcatgta
    17161 cggtaaagac cgtttgacgc agccgctgct gcgtatgaaa aacggtaaat atgacaaaga
    17221 aggcgaattt accctaatca cctgggatca ggccttcgat gtgatggaag agaaattcaa
    17281 aaccgccctg aaagaaaaag ggccggaatc gatcggtatg ttcggttctg gtcagtggac
    17341 tatctgggaa ggttatgccg cgtccaagct gtttaaagcg ggcttccgtt cgaacaacat
    17401 cgacccgaac gcgcgtcact gtatggcgtc ggcagtagtt ggctttatgc gtacctttgg
    17461 tatggatgag ccgatgggct gctatgacga catcgagcag gctgacgcgt ttgtgctgtg
    17521 gggcgcaaac atggcggaga tgcacccgat cctctggtcg cgcatcacta accgtcgtct
    17581 ctctaatcag aacgtcaccg tggcggtgct ttctacctac cagcatcgta gcttcgagct
    17641 ggcggataac ggcatcatct ttacgccaca gtctgacctg gtgatcctga actacatcgc
    17701 caactatatc attcaaaaca atgcgataaa tcaggacttc ttcagcaaac acgttaacct
    17761 gcgcaaaggg gcgacggaca ttggctacgg tttacgtccg acccatccgc tggaaaaagc
    17821 agcgaagaat ccaggttctg acgcctccga accgatgagc tttgaagatt acaaagcctt
    17881 cgttgccgag tatacgctgg aaaaaactgc cgaaatgacc ggcgtgccga aagaccagtt
    17941 agaacaactg gcgcagctgt atgccgatcc gaacaagaaa gtcatctcct actggacgat
    18001 gggcttcaac cagcatactc gtggcgtgtg ggctaacaac ctggtctaca acctgcacct
    18061 gctgaccggc aaaatttccc agccgggttg cggtccgttc tccctgaccg ggcaaccttc
    18121 tgcgtgtggt actgcgcgtg aagtgggcac ctttgctcac cgtctgcctg cggacatggt
    18181 ggtgaccaac gagaaacacc gtgatatctg cgagaagaag tggaatatcc cgagcggcac
    18241 cattccggcg aaaatcggtc tgcacgcggt ggcacaagac cgtgcgctga aagacggcaa
    18301 actgaatgtt tactggacca tgtgtaccaa caacatgcag gccgggccga acatcaatga
    18361 agagcgtatg ccgggctggc gcgatccgcg caacttcatc atcgtctccg atccgtatcc
    18421 gacagtcagt gcgctggccg ccgacttgat cctgccgacc gcaatgtggg tagagaaaga
    18481 gggcgcttac ggtaacgccg aacgccgtac tcagttctgg cgtcaacagg tacaggcacc
    18541 gggcgaagcg aaatcggatc tctggcagtt agtccagttc tcccgccgct tcaaaactga
    18601 agaagtatgg ccggaagatc tgctggcgaa gaaaccggaa ctgcgtggca aaacgctgta
    18661 cgaagtgctg tatgccacac cggaagtgag caaattcccg gtatccgaac tggcggaaga
    18721 tcagctgaac gatgaatccc gcgagctggg cttctatctg caaaaagggc tgttcgaaga
    18781 gtacgcatgg tttggtcgcg gtcacggtca cgatctggca ccgttcgatg actaccacaa
    18841 agcgcgcggt ctgcgctggc cggtggtgaa cggtaaagaa acgcagtggc gttacagcga
    18901 aggtaacgac ccgtacgtga aagcgggcga aggctataag ttctacggca aaccggatgg
    18961 caaagcggtg atcttcgcac tgccattcga accggcggcg gaagcaccgg atgaagagta
    19021 cgacctgtgg ctctctaccg gacgcgttct ggagcactgg cacaccggca gtatgactcg
    19081 ccgtgtacca gaactgcacc gcgccttccc ggaagcggtc ctgtttattc acccgctgga
    19141 tgcgaaagcg cgcgatctgc gtcgtggcga caaagtgaaa gtggtttctc gccgtggcga
    19201 agtgatctcg attgtcgaaa cgcgcggtcg taaccgtccg ccgcagggcc tggtgtacat
    19261 gccgttcttc gacgccgcac agctggttaa caaactaacg ctggacgcga ccgatccgct
    19321 ctcgaaagag acggacttca agaagtgcgc agtcaaactg gagaaggtgt aagccattat
    19381 gtcccggtca gcgaaacctc aaaatggtcg ccgccgcttt ctgcgcgatg ttgttcgcac
    19441 agcaggcggg ctggctgccg tgggtgtggc gctggggtta caacagcaaa ccgcacgcgc
    19501 atctggcgtg cggttgcgcc cgcccggagc cataaacgag aacgcctttg ccagtgcctg
    19561 tgtgcgttgc ggtcagtgtg ttcaggcttg cccttacgac accttaaaac tggcgacgct
    19621 ggcctctggt ctgtcggcgg gcacgccata ttttgtcgca cgggatattc cttgcgaaat
    19681 gtgtgaggac attccgtgcg ccaaagtgtg cccgagcggt gcgctggatc gtgagatcga
    19741 atcgatcgac gacgcgcgga tggggctggc ggtactggtg gaccaggaaa actgtctcaa
    19801 ctttcagggg ctgcgctgcg atgtttgtta tcgcgaatgc ccgaaaattg atgaggccat
    19861 caccctggag ctggagcgca acacgcgtac cggtaagcac gcccgctttc tgccgacggt
    19921 tcacagagac gcctgtaccg gttgcggtaa gtgcgaaaaa gtgtgcgtgc tggaacaacc
    19981 ggcaatcaag gtgttaccgc tgtcactggc taaaggggag ttaggtcacc attaccgctt
    20041 cggctggctg gaggggaaca atggcaaatc gtaaacgtga cgccgggcgc gaggcgctgg
    20101 agaaaaaagg ctggtggcgc agtcaccgtt ggctggtgtt acgtcgcctt tgtcagttct
    20161 tcgtgctggg gatgtttttg agcggtccgt ggtttggtgt gtggatctta cacggtaact
    20221 acagcagtag cctgttattc gacaccgttc cgctgaccga tccgctgatg acgctgcaaa
    20281 gtcttgccag cggtcatctg cctgccacgg tggcgttgac cggtgcggtg attatcaccg
    20341 tgctctacgc cctggcagga aagcgattat tttgcagctg ggtctgcccg ctgaatccga
    20401 ttaccgactt agcgaactgg ttacgcaggc gctttgacct caatcagtct gcgacgatcc
    20461 ctcgccacat tcgctacgtg ctgttggtgg tcattctgct gggatcggcc ttaactggca
    20521 cgctcatctg ggaatggatc aaccccgtat ctctgatggg gcgcagcctg gtaatgggct
    20581 tcggcagcgg cgcgctgctt attctcgcgc tgtttttatt tgatctactg gtcgttgaac
    20641 acggctggtg cgggcacatt tgtccggttg gcgcgctgta tggcgtgctg ggtagcaaag
    20701 gtgtgattac cgttgcggcc accgatcggc agaaatgtaa ccgctgtatg gattgttttc
    20761 atgtttgccc ggaaccgcgt gtgctacgtg ccccggtgct ggatgaacaa agcccggtgc
    20821 aggtcaccag ccgcgattgc atgacgtgcg gtcgctgcgt ggatgtctgt tctgaggatg
    20881 tatttacaat aactacacga tggagttcgg gagcgaaatc atgaaaagcc atgacctgaa
    20941 gaaagcgctg tgtcaatgga cggcgatgct ggccctggtg gtaagcggcg cggtttgggc
    21001 ggctaatggc gtcgatttta gccagtcgcc ggaagtatcc gggacacagg aaggggccat
    21061 tcgaatgcca aaagagcagg aacggatgcc gctgaactat gtgaatcagc cgccaatgat
    21121 cccgcatagc gttgaaggtt atcaggtaac gaccaatacc aaccgctgct tgcagtgcca
    21181 cggtgtcgaa agttatcgca ccactggcgc gccgcgcatt agtcctactc actttatgga
    21241 cagcgacggc aaagtgggcg cggaagtggc tccgcgtcgt tatttctgtc tgcaatgtca
    21301 cgtaccgcag gccgataccg cgccaatcgt ggggaatacc tttaccccat caaaaggtta
    21361 cgggaaataa gaggttatta tgggaaattc tgaccgtaag cctggtctga ttaagcgcct
    21421 gtggaaatgg tggcgtaccc ccagccgtct ggcgctgggg acgctgctgt tgatcggttt
    21481 tgttggcggc atcgtcttct ggggtggctt taacactggg atggaaaaag ccaataccga
    21541 agagttctgc attagctgcc acgaaatgcg caacacggtg tatcaggaat acatggattc
    21601 cgtgcactac aacaaccgta gcggcgtccg tgcgacctgt ccggattgtc acgttccgca
    21661 cgagtttgtg ccgaagatga tacgcaagct caaagcaagt aaagagctgt atggtaaaat
    21721 ttttggcgtt attgacacgc cgcagaaatt tgaagctcat cgtctgacga tggcacagaa
    21781 tgagtggcgg cgcatgaagg acaataactc gcaggagtgc cgtaactgtc acaacttcga
    21841 gtatatggat acaaccgccc agaaatcggt tgccgcgaag atgcatgacc aggcggtgaa
    21901 agatgggcaa acctgtattg attgccataa agggatagcg cacaagctgc ccgatatgcg
    21961 tgaagtcgag ccaggttttt aacagggtta ttgcgtgggt atgcttgaag ccagagagtt
    22021 actttgtgag cgggatgaac gaaccttatt tagtggcttg tcatttacgc tgaacgcagg
    22081 agagtgggta caaatcaccg gtagcaacgg cgcggggaag acaacgcttc tccgtttgct
    22141 gacggggttg tctcgccctg acgcaggcga ggttctctgg caagggcagc ccttgcatca
    22201 ggtacgcgac agctaccatc aaaacctgtt atggataggc catcagccgg ggatcaaaac
    22261 ccggctgacg gcgttagaaa atctgcactt ttatcatcgc gatggcgata ccgcacaatg
    22321 tctggaagcc ctggcgcagg ccgggcttgc cggattcgaa gatattcctg taaatcagct
    22381 ctcggccggg caacaacgcc gcgtcgcttt agcgcgtctg tggctgaccc gtgccacgtt
    22441 atggatcctc gacgagcctt ttaccgcgat tgacgttaac ggcgtcgatc gtctgaccca
    22501 gcgtatggcg cagcatacgg agcagggggg gattgtgatt ctgactaccc accagccgct
    22561 caacgttgct gaaagtaaaa ttcgccgcat ttcactgacg caaacgaggg ccgcatgatg
    22621 ttctggcgca ttttccgtct tgagctgcgt gtagcgtttc gccatagcgc cgaaatcgcc
    22681 aacccgctgt ggttcttcct gattgtaatt accctttttc cgctcagtat cggtccggag
    22741 ccgcaactgc tggcgcgtat tgcaccgggc attatctggg ttgctgcgct gctttcatcc
    22801 ttgctggcgc tggaacgact gttccgtgac gatttgcagg acggcagtct tgaacaattg
    22861 atgttgttgc cgttaccctt gcccgccgtt gtgctggcga aggtgatggc gcactggatg
    22921 gtaaccggtc tgccgttact catcctttcg ccactggtag caatgctact gggaatggat
    22981 gtttatggct ggcaagtgat ggcgctgacg ctgctgctgg gaacgcctac gcttggcttt
    23041 ctcggtgcac cgggtgtggc gttgacagtg ggacttaagc gcggtggtgt gctgctcagc
    23101 atactggtgt taccgctgac tatcccatta ctcatctttg ccaccgccgc gatggacgcg
    23161 gcttccatgc atttgcccgt tgacgggtat ctggcaattt taggcgcgtt gctggcaggc
    23221 accgcgacat taagtccttt tgcgacggcg gcagcgttac gaatcagcat tcaataacgc
    23281 tggattactg atttttgttc gagtctggta tcgaaactat gtggaaaaca ctgcatcaac
    23341 tggcgatccc accacggctg tatcaaatct gtggctggtt tataccgtgg ctggcaattg
    23401 ccagtgtggt cgtgcttacc gtcggctgga tctggggatt cggctttgct ccggctgatt
    23461 atcagcaggg aaatagctac cgcattatct acctgcatgt gcctgcggcg atctggtcga
    23521 tgggtattta tgcatcaatg gcggtggcgg cgtttattgg ccttgtctgg cagatgaaaa
    23581 tggccaacct ggcggtggcg gcgatggccc ccattggtgc cgtgtttacc tttattgccc
    23641 tggttaccgg ctctgcatgg ggaaaaccga tgtggggcac ctggtgggta tgggatgcac
    23701 gtctgacttc tgaactggtg ctgctgtttt tgtatgtggg tgtgattgcc ctgtggcacg
    23761 ccttcgacga ccgccgtctg gcgggccgtg cggcaggtat cctggtgctg attggcgtgg
    23821 tgaatctgcc gattattcat tactccgtgg agtggtggaa caccctgcat cagggatcaa
    23881 cgcggatgca gcaaagtatc gatccggcga tgcgttcgcc gctgcgctgg tcgatttttg
    23941 gcttcctgct cctgtctgcc acgctgacgc tgatgcggat gcgtaatttg attttgctga
    24001 tggaaaaacg ccgtccgtgg gtgagtgaac tgatactgaa aagaggccgt aaatgacccc
    24061 tgcatttgct tcctggaatg aatttttcgc aatgggcggt tacgcctttt ttgtctggct
    24121 ggcggtggtg atgaccgtta ttccgctggt ggttttggtc gtgcactcgg tgatgcagca
    24181 tcgcgcaatt ctgtgtggtg tggagcaaca gcgggcgcgt gaggcgcgtt tacgtgctgc
    24241 gcaacagcag gaggctgcat gaatattcgc cgtaaaaacc gcttgtggat tgcctgtgct
    24301 gtgttggcag gtttggcgct gaccatcggt ctggtgctgt atgcgctgcg ctcgaatatc
    24361 gatctctttt atacgccggg ggaaattctc tacggcaagc gtgaaactca gcaaatgccg
    24421 gaagtcggtc agcgtctgcg cgttggcggg atggtgatgc cgggtagtgt gcagcgcgat
    24481 cccaattcgc tgaaagtgac cttcaccatt tacgacgctg aaggctcagt ggatgtctct
    24541 tacgaaggca ttttgccgga tctgttccgt gaagggcagg gcgttgtggt gcagggcgag
    24601 ctggaaaaag gcaatcatat cctcgcgaaa gaagtgctgg cgaaacacga cgaaaactac
    24661 acgccgccag aagttgagaa agcgatggaa gctaaccacc gtcgcccggc gagtgtttat
    24721 aaggacccag catcatgatg ccggaaattg gaaacgggct gctgtgcctg gcgctgggaa
    24781 ttgcgctgct gctgtccgtg tatccgctat ggggcgtggc gcgcggagat gcgcgcatga
    24841 tggcgtcttc ccgcttgttt gcctggctgc tgtttatgtc tgtggctggc gcatttctgg
    24901 tgctggtcaa tgctttcgtg gtcaacgact ttaccgtcac ctatgttgcc agcaactcca
    24961 atacccagct tccggtgtgg tatcgcgtgg cggctacctg gggcgcgcat gaaggttcgc
    25021 ttctgctgtg ggtgctgctg atgagcggct ggacctttgc ggtggcgatt tttagtcagc
    25081 gtattccgct ggatattgtg gcccgtgtac tggcgataat ggggatggtc agcgtcggct
    25141 ttttgctgtt cattctcttt acctctaacc cgttctcacg cacgctgccg aacttcccaa
    25201 ttgaagggcg cgatcttaac ccgctgttac aggatccggg gctgatcttc catccgcctc
    25261 tgctttatat ggggtacgtg ggtttctcgg tggcgtttgc ttttgccatt gcttctttgc
    25321 tgagcgggcg tctggacagc acttatgcgc gttttactcg cccgtggacg ctggcggcgt
    25381 ggattttcct gacgctcggc attgtgctcg gttccgcatg ggcctattac gaactcggct
    25441 gggggggctg gtggttctgg gatccggtag aaaacgcctc gtttatgccg tggctggtgg
    25501 ggactgcgct gatgcactca ctggcggtca ctgaacaacg cgccagcttc aaagcgtgga
    25561 cattactgct ggcaatcagt gccttctcgt tgtgtctgct ggggactttc ctggtgcgtt
    25621 ccggcgtgct ggtatcggta cacgcgtttg cctctgattc ggcacgcggt atgtttatcc
    25681 tcgcctttat ggtactggtg attggtggtt cgctgctgct gtttgccgcg cgtggacaca
    25741 aagttcgctc acgcgtaaac aatgcgctgt ggtcgcggga atctctgctg ttagcgaaca
    25801 acgttttgtt ggtcgccgcg atgctggtgg tattactggg gacgctgctg ccgctggtgc
    25861 acaagcaact gggactgggc agtatttcga ttggcgaacc gttcttcaac accatgttta
    25921 cctggctgat ggtgccgttt gcgctgctgc ttggtgtcgg tcctctggtg cgctgggggc
    25981 gcgatcgccc acgtaaaatc cgcaatttat tgattatcgc cttcatctca acgctggtgc
    26041 tgtcgctgct gctgccgtgg ctgttcgaaa gcaaagttgt ggcgatgacg gtgctcggcc
    26101 tggcaatggc ctgctggatt gctgtgctgg caattgcgga agctgcgctg cgtatttcac
    26161 gtggcacgaa aaccaccttc agttattggg gaatggtggc ggctcacctg gggctggcag
    26221 tgacaattgt tggtattgcc tttagccaga actatagcgt tgagcgtgat gtgcgcatga
    26281 agtccggcga tagcgtcgat attcatgaat atcgcttcac cttccgtgat gtcaaagagg
    26341 tgactggccc gaactggcgc ggcggtgtgg cgactattgg cgtaacgcga gagggtaaac
    26401 cggaaacggt gctgtatgcg gaaaaacgtt attacaacac tgccgggtcg atgatgaccg
    26461 aagcggcgat tgacggcggc atcacgcgtg acctgtacgc cgcgctcggt gaagagctgg
    26521 aaaacggcgc gtgggccgtg cgtctttact acaaaccgtt tgttcgctgg atttgggcgg
    26581 gcgggctgat gatggcgttg ggcggactgc tgtgtctgtt tgatcctcgc tatcgtaagc
    26641 gcgtgagtcc gcaaaaaact gcgccggagg ctgtatgaag cgcaaagtat tgttaattcc
    26701 gttgattatc ttcctggcga ttgccgcggc gctgctgtgg cagctggcgc gtaatgccga
    26761 aggggatgat ccgaccaatc tggaatcggc gctcattggc aagccagtgc cgaagtttcg
    26821 cctcgaatca ctggacaatc cggggcagtt ttatcaggcg gatgtgctga ctcagggcaa
    26881 acctgtgctg cttaacgtct gggctacctg gtgtccgacc tgccgtgcgg aacatcaata
    26941 tctgaatcag ctttctgcgc agggcattcg cgtggtcggc atgaactata aagacgatcg
    27001 ccagaaggca ataagctggc tgaaagagct gggcaatcct tacgcgctaa gcctgtttga
    27061 tggcgatggc atgttagggc tggatctcgg tgtctatggc gcgccagaaa cgttcctcat
    27121 cgacggcaac ggcatcattc gctatcgcca tgcgggcgat ctcaatcctc gcgtctggga
    27181 agaagagatc aagccgctgt gggagaaata cagtaaggag gccgcacaat gaggttttta
    27241 ttgggcgtgc tgatgctgat gatctccggc tcagcgctgg cgaccatcga cgtgttgcag
    27301 tttaaggatg aagcgcagga gcagcagttc cgccaactca ctgaagaact acgctgcccg
    27361 aaatgccaga acaacagcat tgccaattcc aactcgatga ttgccaccga cctgcgccag
    27421 aaagtgtatg aactgatgca ggaaggtaaa agtaaaaaag agattgtcga ttatatggtg
    27481 gcgcgttacg gcaacttcgt cacttacgat ccgccgttaa cgccgctgac cgtgctgctg
    27541 tgggtgcttc cggtagtggc tattggcatt ggcggttggg tcatttacgc ccgttcgcgg
    27601 cgtcgggtac gcgtggtgcc ggacgcgttt cctgaacaaa gcgtgccgga aggtaagcgt
    27661 gccggatata ttgtttatct gccgggtatt gtggtggcgt taattgtggc tggcgtcagc
    27721 tactaccaga ctggcaatta tcagcaggtg aaaatctggc agcaggccac ggcacaggct
    27781 ccggcgttgc tggacagggc gctggatccg aaagccgatc cgctcaacga agaagagatg
    27841 tcgcgtcttg cgctggggat gcgtactcaa ctgcaaaaaa atccgggaga tatagaaggc
    27901 tggattatgt tgggccgcgt tggcatggcg ctgggtaacg ccagtatcgc caccgatgca
    27961 tacgctactg cgtatcgcct cgatccgaaa aacagtgatg cagcactggg ttatgctgaa
    28021 gcgttgacac gttcatctga tcccaacgac aaccgcctcg gtggtgaact gctgcgccag
    28081 ttggtgagaa cggaccatag caatatccgt gtgttaagca tgtatgcgtt taatgccttt
    28141 gagcagcagc gatttggcga agccgttgcc gcgtgggaga tgatgttgaa actcttatct
    28201 gccaacgata ctcgccgtgc ggtgattgaa cgtagtatcg cgcaggcgat gcaacatttg
    28261 tcgccgcagg agagtaaata aaaagaggcc cgatggtgat gccatcgggc tatttttatt
    28321 gtgccccgcg ttgttgcagg aacagaatgg tggctgccac gcgtgagcgg acattgagtt
    28381 tgcgcagcag attgcgaata tgtactttta ctgtctgctc tgaaatattc aacaccgagg
    28441 caatctgttt atttgacagc ccctgtgcca gctcgtgcag aacatccagc tcgcgctccg
    28501 tcagcacgct gaagggatct tcttccgcgc caaacatttc acgttcacgt aagtactgat
    28561 tgacgcgttc gctaaagact ttgctgcctt tcgctccagc acgaattgct tccagcaata
    28621 cttccgggtc gctgtctttc aacagataac cgtctgcgcc tgcgtctatc agcgcaaaga
    28681 catcgctgga ggcatctgat acggtcagga taataatttg cgcggtaacg ccatccctgc
    28741 gcaaggcatt gagggtatcc aggccactca tacctttcat attgagatcc agcaagatca
    28801 cgtcgatatc cagtctattc gccagatcga tcgcgctcgc gccgtcgccc gcttcggcga
    28861 ccacttcaaa gccaggatca agctccagta actgacgaac accgcgtcgc ataagtggat
    28921 gatcatccac aatcatcacc tgaaaaggcg ttgcttcagg catagtagtc tcctggggtt
    28981 ttattagaat cattatgttt gagcgtagcg ttggtaacgc taccaggcgc gtgaatgtta
    29041 ccccatttta tgtatggaca tgtagtgaaa actacaacct tgtcgttcgc tttggcatca
    29101 ttttcattat aaagacggaa ttttgcatca gcttc
//
LOCUS       DADMHM010000037        27877 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.038, whole genome shotgun sequence.
ACCESSION   DADMHM010000037 DADMHM010000000
VERSION     DADMHM010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 27877)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27877)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27877
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.038"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..1117
                     /locus_tag="JN125_001363"
     CDS             <1..1117
                     /locus_tag="JN125_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311443.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HAY8871196.1"
                     /translation="RANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHS
                     SGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKC
                     WHRHRKLWPDRTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMV
                     DNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVN
                     PDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVNTQLDPEKLTTAQLIAAWQSGE
                     PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR
                     DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI"
     gene            complement(1181..2434)
                     /locus_tag="JN125_001364"
     CDS             complement(1181..2434)
                     /locus_tag="JN125_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019077397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HAY8871197.1"
                     /translation="MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVM
                     QAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQAN
                     FAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEK
                     QAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVP
                     HAHVVTTTTHKTLAGPRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVAL
                     KEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEAD
                     AALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS
                     INDEAVIERIKGKVLDICARYPVYA"
     gene            2762..3952
                     /gene="hmpA"
                     /locus_tag="JN125_001365"
     CDS             2762..3952
                     /gene="hmpA"
                     /locus_tag="JN125_001365"
                     /EC_number="1.14.12.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NO-inducible flavohemoprotein"
                     /protein_id="HAY8871198.1"
                     /translation="MLDAQTIATVKATIPLLVETGPKLTAHFYDRMFTHNPELKEIFN
                     MSNQRNGDQREALFNAIAAYASNIENLPALLPAVEKIAQKHTSFQIKPEQYNIVGEHL
                     LATLDEMFSPGQEVLDAWGKAYGVLANVFINREAEIYNENASKAGGWEGTRDFRIVAK
                     TPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDGKGYR
                     IAVKREEGGQVSNWLHNHANVGDVVKLVAPAGDFFMAVADDTPVTLISSGVGQTPMLA
                     MLDTLAKAGHTAQVNWFHAAENGDVHAFADEVKELGQSLPRFTAHTWYRQPSEADRAK
                     GQFDSEGLMDLSKLEGAFSDPTMQFYLCGPVGFMQFTAKQLVDLGVKQENIHYECFGP
                     HKVL"
     gene            complement(3997..4335)
                     /gene="glnB"
                     /locus_tag="JN125_001366"
     CDS             complement(3997..4335)
                     /gene="glnB"
                     /locus_tag="JN125_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017373484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulatory protein P-II"
                     /protein_id="HAY8871199.1"
                     /translation="MKKIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTE
                     LYRGAEYMVDFLPKVKIEIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRI
                     RTGEEDDAAI"
     gene            complement(4396..5730)
                     /gene="glrR"
                     /locus_tag="JN125_001367"
     CDS             complement(4396..5730)
                     /gene="glrR"
                     /locus_tag="JN125_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator GlrR"
                     /protein_id="HAY8871200.1"
                     /translation="MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRV
                     LNREKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFS
                     FLTKPVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSV
                     LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVS
                     NREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISAT
                     HRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVR
                     AFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFV
                     EARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE"
     gene            complement(5720..6433)
                     /gene="qseG"
                     /locus_tag="JN125_001368"
     CDS             complement(5720..6433)
                     /gene="qseG"
                     /locus_tag="JN125_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system QseEF-associated
                     lipoprotein QseG"
                     /protein_id="HAY8871201.1"
                     /translation="MRHIFQRLLPRRLWLAGLPCLALLGCVQNHNKPAIDTPAEEKIP
                     VYQLADYLSTECSDIWALQGKSTETNPLYWLRAMDCADRLMPAQSRQQARQYDDGSWQ
                     NTFKQGILLADAKITPYERRQLVARIEALSTEIPAQVRPLYQLWRDGQALQLQLAEER
                     QRYSKLQQSSDSELDTLRQQHHVLQQQLELTTRKLENLTDIERQLSTRKPAGNFSPDT
                     PHESEKPAPSTHEVTPDEP"
     gene            complement(6598..8025)
                     /gene="qseE"
                     /locus_tag="JN125_001369"
     CDS             complement(6598..8025)
                     /gene="qseE"
                     /locus_tag="JN125_001369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417051.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two component system sensor histidine kinase
                     QseE/GlrK"
                     /protein_id="HAY8871202.1"
                     /translation="MKRWPVFPRSLRQLVMLAFLLILLPLLVLAWQAWQSLNALSDQA
                     ALVNRTTLIDARRSEAMTNAALEMERSYRQYCVLDDPTLAKVYQSQRKRYSEMLDAHA
                     GVLPDDKLYQALRQDLNNLAQLQCNNSGPDAAAAARLEAFASANTEMVQATRTVVFSR
                     GQQLQREIAERGQYFGWQSLVLFLVSLVMVLLFTRMIIGPVKNIERMINRLGEGRSLG
                     NSVSFSGPSELRSVGQRILWLSERLSWLESQRHQFLRHLSHELKTPLASMREGTELLA
                     DQVVGPLTPEQKEVVSILDSSSRNLQKLIEQLLDYNRKQADSAVELENVELAPLVETV
                     VSAHSLPARAKMMHTDVDLKATACLAEPMLLMSVLDNLYSNAVHYGAESGNICLRSSS
                     HGARVYIDVINTGTPIPQEERAMIFEPFFQGSHQRKGAVKGSGLGLSIARDCIRRMQG
                     ELYLVDESGQDVCFRIELPSSKNTK"
     gene            complement(8583..12470)
                     /gene="purL"
                     /locus_tag="JN125_001370"
                     /gene_synonym="purI"
     CDS             complement(8583..12470)
                     /gene="purL"
                     /locus_tag="JN125_001370"
                     /gene_synonym="purI"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006683423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase"
                     /protein_id="HAY8871203.1"
                     /translation="MMEILRGSPALSAFRINKLLARFQAARLPVHNIYAEYVHFADLN
                     APLNDDEHAQLERLLKYGPALASHAPQGKLLLVTPRPGTISPWSSKATDIAHNCGLQQ
                     VNRLERGVAYYIEAGTLTNEQWQQVTAELHDRMMETVFFDLDDAEQLFAHHQPTPVTS
                     VDLLGQGRQALIDANLRLGLALAEDEIDYLQDAFTKLGRNPNDIELYMFAQANSEHCR
                     HKIFNADWIIDGEQQPKSLFRMIKNTFETTPDHVLSAYKDNAAVMEGSEVGRYFADHE
                     TGRYDFHQEPAHILMKVETHNHPTAISPWPGAATGSGGEIRDEGATGRGAKPKAGLVG
                     FSVSNLRILGFEQPWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALNGYFRTY
                     EEKVNSHNGEELRGYHKPIMLAGGIGNIRADHVQKGEINVGAKLVVLGGPAMNIGLGG
                     GAASSMASGQSDADLDFASVQRDNPEMERRCQEVIDRCWQLGDANPILFIHDVGAGGL
                     SNAMPELVSDGGRGGKFELRDILSDEPGMSPLEIWCNESQERYVLAVAADQLPLFDEL
                     CKRERAPYAVIGEATEELHLSLHDRHFDNQPIDLPLDVLLGKTPKMTRDVQTLKAKGD
                     ALVREGITIADAVKRILHLPTVAEKTFLVTIGDRSVTGMVARDQMVGPWQVPVANCAV
                     TTASLDSYYGEAMAIGERAPVALLDFAASARLAVGEALTNIAATQIGDIKRIKLSANW
                     MAAAGHPGEDAGLYEAVKAVGEELCPALGLTIPVGKDSMSMKTRWQEGNEEREMTSPL
                     SLVISAFARVEDVRHTITPQLSTEDNALLLIDLGKGNNALGATALAQVYRQLGDKPAD
                     VRDVAQLKGFYDAIQALVAQRKLLAYHDRSDGGLLVTLAEMAFAGHCGINADIASLGD
                     DRLAALFNEELGAVIQVRAADREAVESVLAQHGLADCVHYVGQAVSGDRFVITANGQT
                     VFSESRTTLRVWWAETTWQMQRLRDNPECADQEHQAKSNDADPGLNVKLSFDINEDVA
                     APYIATGARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLTGRTGLEDFHAL
                     VACGGFSYGDVLGAGEGWAKSILFNDRVRDEFATFFHRPQTLALGVCNGCQMMSNLRE
                     LIPGSELWPRFVRNTSDRFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGEGRVEVR
                     DAAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTESGRVTIMMPHPE
                     RVFRTVSNSWHPENWGEDGPWMRIFRNARKQLG"
     gene            12727..14283
                     /gene="mltF"
                     /locus_tag="JN125_001371"
     CDS             12727..14283
                     /gene="mltF"
                     /locus_tag="JN125_001371"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417053.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     MltF"
                     /protein_id="HAY8871204.1"
                     /translation="MKKLKINYLFIGILALLLAVALWPSIPWFGKADNRIAAIQARGE
                     LRVSTIHTPLTYNEINGKPFGLDYELAKQFADYLGVKLKVTVRQNISQLFDDLDNGNA
                     DLLAAGLVYNSERVKNYQPGPTYYSVSQQLVYKVGQYRPRTLCNLTAEQLTVAPGHVV
                     VNDLQTLKETKFPELSWKVDDKKGSAELMEDVIEGKLDYTIADSVAISLFQRVHPELA
                     VALDITDEQPVTWFSPLDGDNTLSAALLDFFNEMNEDGTLARIEEKYLGHGDDFDYVD
                     TRTFLRAVDAVLPQLKPLFEKYAEEIDWRLLAAIAYQESHWDAQATSPTGVRGMMMLT
                     KNTAQSLGITDRTDAEQSISGGVRYLQDMMSKVPESVPENERIWFALAAYNMGYAHML
                     DARALTAKTKGNPDSWADVKQRLPLLSQKPYYSKLTYGYARGHEAYAYVENIRKYQIS
                     LVGYLQEKEKQATEAAMQLAQDYPAVSATELGKEKFPFLSFLSQSSSNYLTHSPSLLF
                     SRKGSEEKQN"
     gene            complement(14280..14816)
                     /gene="tadA"
                     /locus_tag="JN125_001372"
     CDS             complement(14280..14816)
                     /gene="tadA"
                     /locus_tag="JN125_001372"
                     /EC_number="3.5.4.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA adenosine(34) deaminase TadA"
                     /protein_id="HAY8871205.1"
                     /translation="MRRAFITGVFFLSEVEFSHEYWMRHALTLAKRAWDEREVPVGAV
                     LVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCA
                     GAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFF
                     RMRRQEIKAQKKAQSSTD"
     gene            complement(14841..15476)
                     /gene="yfhb"
                     /locus_tag="JN125_001373"
     CDS             complement(14841..15476)
                     /gene="yfhb"
                     /locus_tag="JN125_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417055.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase C"
                     /protein_id="HAY8871206.1"
                     /translation="MATHERRVVFFDLDGTLHQQDMFGSFLRYLLRRQPLNALLVLPL
                     LPIIAIALLIKGRAARWPMSLLLWGCTFGHSEARLQTLQADFVRWFRDNVTAFPLVQE
                     RLTTYLLSSDADIWLITGSPQPLVEAVYFDTPWLPRVNLIASQIQRGYGGWVLTMRCL
                     GHEKVAQLERKIGTPLRLYSGYSDSNQDNPLLYFCQHRWRVTPRGELQQLE"
     gene            15685..16533
                     /locus_tag="JN125_001374"
     CDS             15685..16533
                     /locus_tag="JN125_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417056.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HAY8871207.1"
                     /translation="MNGLLRIRQRYQGLAQSDKKLADYLLLQPDTARHLSSQQLANEA
                     GVSQSSVVKFAQKLGYKGFPALKLALSEALASQPESPSVPIHNQIRGDDPLRLVGEKL
                     IKENTAAMYATLNVNSEEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGFN
                     AAAVRDMHALLATVQASSPDDLLLAISYTGVRRELNLAADEMLRVGGKVLAITGFTPN
                     ALQQRASHCLYTIAEEQATNSASISACHAQGMLTDLLFIALIQQDLELAPERIRHSEA
                     LVKKLV"
     gene            16589..16849
                     /gene="yfhL"
                     /locus_tag="JN125_001375"
     CDS             16589..16849
                     /gene="yfhL"
                     /locus_tag="JN125_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster ferredoxin YfhL"
                     /protein_id="HAY8871208.1"
                     /translation="MALLITKKCINCDMCEPECPNEAISMGDHIYEINSDKCTECVGH
                     YETPTCQKVCPIPNTIVKDPAHVETEEQLWDKFVLMHHADKI"
     gene            complement(17043..17123)
                     /gene="shoB"
                     /locus_tag="JN125_001376"
     CDS             complement(17043..17123)
                     /gene="shoB"
                     /locus_tag="JN125_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin ShoB"
                     /protein_id="HAY8871209.1"
                     /translation="MTDCRYLIKRVIKIIIAVLQLILLFL"
     gene            complement(17543..17923)
                     /locus_tag="JN125_001377"
     CDS             complement(17543..17923)
                     /locus_tag="JN125_001377"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HAY8871210.1"
                     /translation="MAILGLGTDIVEIARIEAVIARSGERLARRVLSDNEWAIWKTHH
                     QPVRFLAKRFAVKEAAAKAFGTGIRNGLAFNQFEVFNDELGKPRLRLWGEALKLAEKL
                     GVVNMHVTLADERHYACATVIIES"
     gene            complement(17923..18654)
                     /gene="pdxJ"
                     /locus_tag="JN125_001378"
     CDS             complement(17923..18654)
                     /gene="pdxJ"
                     /locus_tag="JN125_001378"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708416.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HAY8871211.1"
                     /translation="MAELLLGVNIDHIATLRNARGTAYPDPVQAAFIAEQAGADGITV
                     HLREDRRHITDRDVRILRQTLDTRMNLEMAVTEEMLAIAVETKPHFCCLVPEKRQEVT
                     TEGGLDVAGQREKMRDACKRLTDAGIQVSLFIDADEEQIKAAAEVGAPFIEIHTGCYA
                     DAKTDAEQAQELVRIAKAATFAASLGLKVNAGHGLTYHNVKAIAAIPEMHELNIGHAI
                     IGRAVMTGLKDAVAEMKRLMLEARG"
     gene            complement(18666..19394)
                     /gene="recO"
                     /locus_tag="JN125_001379"
     CDS             complement(18666..19394)
                     /gene="recO"
                     /locus_tag="JN125_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HAY8871212.1"
                     /translation="MEGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRS
                     TLKGALQPFTPLLLRFGGRGEVKTLRSAEAVSLALPLSGITLYSGLYINELLSRVLEY
                     ETRFSELFFDYLHCIQSLAGATGTPEPALRRFELALLGHLGYGVNFTYCAGSGEPVDD
                     TMTYRYREEKGFIASVVIDNKTFTGRQLKALNAREFPDADTLRAAKRFTRMALKPYLG
                     GKPLKSRELFRQFMPKRTVKTHYE"
     gene            complement(19406..20311)
                     /gene="era"
                     /locus_tag="JN125_001380"
     CDS             complement(19406..20311)
                     /gene="era"
                     /locus_tag="JN125_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HAY8871213.1"
                     /translation="MSIDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR
                     HRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT
                     PDDEMVLNKLRDGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL
                     NVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEI
                     ERFVSNERGGYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLE
                     LWVKVKSGWADDERALRSLGYVDDL"
     gene            complement(20308..20988)
                     /gene="rnc"
                     /locus_tag="JN125_001381"
     CDS             complement(20308..20988)
                     /gene="rnc"
                     /locus_tag="JN125_001381"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003848606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HAY8871214.1"
                     /translation="MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLG
                     DSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELK
                     SGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRL
                     QEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQ
                     ALKKLELE"
     gene            complement(21261..22235)
                     /gene="lepB"
                     /locus_tag="JN125_001382"
     CDS             complement(21261..22235)
                     /gene="lepB"
                     /locus_tag="JN125_001382"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HAY8871215.1"
                     /translation="MANMFALILVIATLVTGILWCVDKFFFVPKRRERQAAAQAAAGD
                     SLDKATLKKVAPKPGWLETGASVFPVLAIVLIVRSFIYEPFQIPSGSMMPTLLIGDFI
                     LVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDP
                     VSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETK
                     ENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNR
                     DNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGVRLSRIGGIH"
     gene            complement(22251..24050)
                     /gene="lepA"
                     /locus_tag="JN125_001383"
     CDS             complement(22251..24050)
                     /gene="lepA"
                     /locus_tag="JN125_001383"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010434076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HAY8871216.1"
                     /translation="MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSM
                     DLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVV
                     DAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVR
                     CSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLR
                     KGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTL
                     ARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYEPESSSAL
                     GFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTSREVIYVDSPSKLPA
                     VNNIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVALTYEIPMAEV
                     VLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVDVLINGERVDALALITHRDNSQNRG
                     RELVEKMKDLIPRQQFDIAIQAAIGTHIIARSTVKQLRKNVLAKCYGGDISRKKKLLQ
                     KQKEGKKRMKQIGNVELPQEAFLAILHVGKDNK"
     gene            complement(24248..24727)
                     /gene="rseC"
                     /locus_tag="JN125_001384"
     CDS             complement(24248..24727)
                     /gene="rseC"
                     /locus_tag="JN125_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SoxR-reducing system protein RseC"
                     /protein_id="HAY8871217.1"
                     /translation="MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLG
                     PQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS
                     DVAALCGAVLGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ"
     gene            complement(24724..25680)
                     /gene="rseB"
                     /locus_tag="JN125_001385"
     CDS             complement(24724..25680)
                     /gene="rseB"
                     /locus_tag="JN125_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-E factor regulatory protein RseB"
                     /protein_id="HAY8871218.1"
                     /translation="MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYE
                     LSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGDEISYFEPGLEPFTL
                     NGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWM
                     DTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKA
                     KFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQM
                     LRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFGAAQ"
     gene            complement(25680..26330)
                     /gene="rseA"
                     /locus_tag="JN125_001386"
     CDS             complement(25680..26330)
                     /gene="rseA"
                     /locus_tag="JN125_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma-E factor RseA"
                     /protein_id="HAY8871219.1"
                     /translation="MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMR
                     GDTPEVLHFDISSRVMAAIEEEPVRQPATLIPEAQPAPHQWQKMPFWQKVRPWAAQLT
                     QMGVAACVSLAVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANN
                     GQQQQVQEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ"
     gene            complement(26363..26938)
                     /gene="rpoE"
                     /locus_tag="JN125_001387"
     CDS             complement(26363..26938)
                     /gene="rpoE"
                     /locus_tag="JN125_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005070454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoE"
                     /protein_id="HAY8871220.1"
                     /translation="MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVLSG
                     DVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIE
                     AENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIA
                     AIMDCPVGTVRSRIFRAREAIDNKVQPLIRR"
     gene            complement(26935..27090)
                     /gene="rseD"
                     /locus_tag="JN125_001388"
     CDS             complement(26935..27090)
                     /gene="rseD"
                     /locus_tag="JN125_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rpoE leader peptide RseD"
                     /protein_id="HAY8871221.1"
                     /translation="MIRLQHDKQKQMRYGTLQKRDTLTLCLLKLQLMEWRFDSAWKFG
                     LGRLYLG"
     gene            27346..>27877
                     /locus_tag="JN125_001389"
     CDS             27346..>27877
                     /locus_tag="JN125_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HAY8871222.1"
                     /translation="MNTLPEHSCDVLIIGSGAAGLSLALRLADQHQVIVLSKGPVTEG
                     STFYAQGGIAAVFDETDSIDSHVEDTLIAGAGICDRHAVEFVASNARSCVQWLIDQGV
                     LFDTHVQPNGEESYHLTREGGHSHRRILHAADATGREVQSTLVSKAQNHPNIRVLERS
                     NAVDLIVSDKIGLPGTR"
BASE COUNT         6693 a         7413 c         7035 g         6736 t
ORIGIN      
        1 gcgcgccaat aaatcaacgc tggcccggct ggcgcaaatt tcgattccgg cagtcagtaa
       61 tattttgcag gaactggaaa gcgaaaaacg ggtggtgaat attgacgatg aaagccagac
      121 gcgcgggcat agtagcggta catggctgat tgcgccggaa ggtgactgga cgctgtgcct
      181 gaacgtgacg cccaccagta ttgagtgtca ggttgctaat gcttgtttaa gtccgaaagg
      241 tgaatttgag tatttacaga ttgatgcacc gacgccgcag gcgctgctgt ccgaaatcga
      301 aaaatgctgg catcgccacc gtaaattgtg gccggaccgc accatcaatc tggcgctggc
      361 aatccacggt caggttgatc cggtgaccgg cgtgtcgcaa accatgccgc aagcgccgtg
      421 gacaacgccg gttgaggtga agtatctgct ggaagagaag ctgggcattc gggtgatggt
      481 cgataatgac tgcgtgatgc tggcgctggc ggagaaatgg caaaataatt cgcaggaacg
      541 ggatttctgc gtgatcaacg ttgattacgg cattggctcg tcgttcgtga ttaacgagca
      601 aatttatcgc ggcagtttgt atggtagcgg acaaattggt cacaccatcg ttaatccgga
      661 tggcgtcgtc tgcgactgtg gacgttacgg ctgcctggaa accgtcgcct cgttaagtgc
      721 attaaaaaaa caggcgcggg tatggctaaa atcacaaccg gttaatactc agcttgatcc
      781 tgaaaaactg acaaccgcgc agttaatcgc tgcctggcag agtggagaac cgtggatcac
      841 cagctgggtt gatcgctctg ccaatgccat tggtttgagt ctgtataact tcctcaacat
      901 cctcaatatt aatcagattt ggttgtacgg tcgcagttgt gcctttggtg agaactggct
      961 taatactatt attcgccaga caggatttaa cccgttcgac cgcgacgaag gaccgagcgt
     1021 gaaagcgacg caaattggct tcgggcaatt aagccgcgca caacaggtgc tgggaattgg
     1081 ctatttgtat gttgaggcgc agttacgaca gatttgatgg cgcgataacg tagaaaggct
     1141 tcccgaagga agcctttttt caacagatta accgtttcgc ttatgcgtaa accgggtaac
     1201 gtgcgcagat gtcgagaact ttacctttga tgcgctcgat aacggcttca tcattgatgc
     1261 tgtccagcac gtcacacatc cagccagcca gttctttcgc ttctgcttct ttgaagccgc
     1321 gacgcgtaat tgccggagta cccacgcgaa taccggaggt cacaaacggg ctcttcggat
     1381 cgttcggtac gctgtttttg ttgacggtga tgttagcacg tcccagagcg gcgtctgctt
     1441 ctttaccggt caggttttta tcaaccagat caaccaggaa caggtggtta tcagtgccgc
     1501 cggaaaccac tttgtagccg cgctcgagga acacttctac catcgcttta gcgtttttcg
     1561 cgacctgctg ctggtaagtt ttgaactcag gctccatcgc ttctttcaga gcaaccgctt
     1621 taccggcgat tacgtgcatc aacggaccgc cctgaccacc agggaaaacg gcagagttca
     1681 gttttttgta cagctcttcg ctaccacctt tcgccaggat caggccgccg cgcggacccg
     1741 ccagggtttt gtgagtggtg gtagtaacaa cgtgagcatg aggaaccggg ttcgggtaga
     1801 cgccagcagc aaccaggccc gcaacgtgcg ccatatcaac gaacaggtaa gcaccgatgc
     1861 tgtcagcgat ttcacgcatt ttcgcccagt ccaccacgcc ggaatatgca gagaaaccac
     1921 cgataatcat tttcggcttg tgttctttgg cttgtttttc cagatcggcg tagtcgatat
     1981 gaccggtagc atcgataccg taaggaacga tgttgtacag tttaccggag aagttaaccg
     2041 gagaaccgtg agtcaggtga ccgccatgcg ccaggttcat acccagaacg gtatcacctg
     2101 gttccagcag cgcggtgtag accgcaaagt tagcctggga gccggagtgc ggctggacgt
     2161 tagcgtagtc agcgccgaac agttctttcg cacgatcgat cgccagttgt tcaacgatat
     2221 caacatactc gcaaccgccg tagtagcgtt tgcccggata accttcagca tatttgttgg
     2281 tcagctgaga accctgcgcc tgcattacgc gcgggctggt gtagttttcg gaggcgatca
     2341 gttcgatgtg ctcttcctga cgtacttttt cctgctccat agcctgccac agttcggcat
     2401 cataatcggc aatgttcatt tcacgcttta acatccgcat ctcctgactc agctaacaat
     2461 aaaatttttg gcctttatag gcggtcctgt tggacaacgg cgaacagtat aaccgaatca
     2521 ttgtgcgata acaggtcttg acaaaggaat ttacgcaaac gattaccttc aggctacgca
     2581 aggctttgga gaataaagag cttgcaaccg gaaacggatt tcttttcagg tttgtgatgc
     2641 aaatttttca cttcatcaca ttctttctga aaaacaccaa agaaccattt acattgcagg
     2701 gctatttttt ataagatgca tttgagatac atcaattaag atgcaaaaaa aggaagacca
     2761 tatgcttgac gctcaaacca tcgctacagt aaaagccacc atccctttac tggtggaaac
     2821 ggggccaaag ttaaccgccc atttctacga ccgtatgttt actcataacc cagaactcaa
     2881 agaaattttt aacatgagta accagcgtaa tggcgatcaa cgtgaagccc tgtttaacgc
     2941 tattgccgcc tacgccagta atattgaaaa cctgcctgcg ctgctgccag cggtagaaaa
     3001 aatcgcgcag aagcacacca gcttccagat caaaccggaa cagtacaaca tcgtcggtga
     3061 acacctgttg gcaacgctgg acgaaatgtt cagcccgggg caggaagtgc tggacgcgtg
     3121 gggtaaagcc tatggtgtac tggctaatgt atttatcaat cgcgaggcgg aaatctataa
     3181 cgaaaacgcc agcaaagccg gtggttggga aggtactcgc gatttccgca ttgtggctaa
     3241 aacaccgcgc agcgcgctta tcaccagctt cgaactggag ccggtcgacg gtggcgcagt
     3301 ggcagaatac cgtccggggc aatatctcgg cgtctggctg aagccggaag gtttcccgca
     3361 tcaggaaatt cgtcagtact ctttgactcg caaaccggat ggcaaaggct atcgtattgc
     3421 ggtgaaacgc gaagagggtg ggcaggtatc caactggttg cacaatcacg ccaatgttgg
     3481 cgatgtcgtg aaactggtcg ctccggcagg tgatttcttt atggctgtcg cagatgacac
     3541 accagtgacg ttaatctctt ccggtgttgg tcaaacgcca atgctggcaa tgctcgacac
     3601 gctggcaaaa gcaggccaca cagcacaagt gaactggttc catgcggcag aaaatggcga
     3661 tgttcacgcc tttgccgatg aagttaagga actggggcag tcactgccgc gctttaccgc
     3721 gcacacctgg tatcgtcagc cgagcgaagc cgatcgcgct aaaggtcagt ttgatagcga
     3781 aggtctgatg gatttgagca aactggaagg tgcgttcagc gatccgacaa tgcagttcta
     3841 tctctgcggc ccggttggct tcatgcagtt taccgcgaaa cagttagtgg atctgggcgt
     3901 gaagcaggaa aacattcatt acgaatgctt tggcccgcat aaggtgctgt aatttgatgt
     3961 tgccggatgg aaacatccgg caacccttga cgcggtttaa attgccgcgt cgtcctcttc
     4021 accggtacgg atgcgaatga cccgtgccac gtcaaagacg aagattttac cgtcaccgat
     4081 tttgccggtt tgcgccgtgc gaataatggt atcgacacag gtatcgacaa tgtcgtccgg
     4141 tacgacaatc tcaattttca ctttcggcag aaaatccacc atatactccg cgccgcggta
     4201 cagctcggta tggcctttct ggcgaccaaa gcctttcact tcggtcaccg tcatgccggt
     4261 aataccgact tcggccagtg cttcgcggac atcgtccagc ttgaagggtt ttataatcgc
     4321 atcaatcttt ttcatgctat tccttgaaaa ggtcgcctgt cttttgatct gctaaacgta
     4381 acacataacg ccaattcatt ccttgaaatc gtttgcatcc agctcgtgtc gggaaagcag
     4441 tttataaaat tctgtccggt tgcgccccgc cattctcgcc gcgtgggtga cgttgccttt
     4501 ggtaatttgc agcagcttac gcaaatagtt gagttcaaac tgattacgtg cctcaacaaa
     4561 ggttggcagc gccgtgtttt caccctccag cgcctgctct actaatgcat cgctaataac
     4621 cggagatgag gtcagcgcca cgcactgttc aatcacgttg accaactggc gcacattacc
     4681 cggccagcta gcggtcatca ggcgtttcat cgcatcagtg gagaacgcgc ggacaaacgg
     4741 tttatgtcgc tctgccgcct ggcgcaacag gtgatttgcc agaagcggaa tgtcttctgt
     4801 gcgctctgcc agagccggaa ttttcaggct gacaacgttg aggcggtaat agagatcttc
     4861 gcggaattcc ccgcgcgcca tcgcttttgg cagatcacgg tgagtggcag aaataatccg
     4921 cacattgata tcaatatcgc ggttactgcc cagcgggcgc actttacgct cctgcaacac
     4981 gcgcagcagt ttgacctgta acggcgcagg catatcgcca atttcatcga gaaatagcgt
     5041 tccgccttcc gccgcctgga ataaaccttc gcgattgctg acagcgccag taaacgcgcc
     5101 acgcgcatga ccaaacagct ccgactccag caattgctcg ggcaatgcgc cacagttaat
     5161 agcaataaat ggtttgctgt tgcgcgggct ggcgttgtgg atagcctggg cgaaaatctc
     5221 tttcccggtg ccgctctgac cgttaatcaa aacgctgacg tctgattgcg ccaccagccg
     5281 cgcctgttcc agcaaacgca gcatcagcgg gctgcgggtg acaattgcct cgcgccagcg
     5341 ttcatcggtg gctggcgcgg attgctccag cgcatcgtca attgcctgat atagcgcgtc
     5401 tttgtcgaca ggcttggtga ggaaactaaa aacgccctgc tgtgttgcag caacggcatc
     5461 ggggatagaa ccatgcgcag taagaataat tactggcatt cccggctgca ctttctggat
     5521 ttcagcaaat agctgcatac cgtccatttc atccatccgc aggtcgctga taactaaatc
     5581 tactttttcg cgattcagta cccgtaatcc ttcagcgcca ctttccgccg tgaccacact
     5641 gtagccttcg ctggtcaggc gcaggccaag cagtttcagc aatcccggat cgtcatcgac
     5701 caataataaa tgcgcaggtt tatggctcat caggagtgac ctcatgggtg gatggcgcgg
     5761 gcttttcact ctcgtgcggc gtatccggcg agaaatttcc agccggtttg cgggtcgaga
     5821 gctggcgttc aatatcagtc aggttttcca gcttgcgggt ggtgagttcc agttgctgct
     5881 gtagaacgtg atgttgctgg cgcaatgtat ccagctcgct gtcgctggac tgctggagtt
     5941 tactgtaacg ttggcgctct tccgccagtt gcagttgcag cgcctgaccg tcgcgccaga
     6001 gttgatacag tgggcgaacc tgtgccggga tctcggtact taacgcttca atacgcgcga
     6061 ccagctggcg gcgctcatac ggcgtaattt tggcgtcggc gagcaaaatc ccttgtttaa
     6121 aggtattttg ccagctgccg tcgtcatatt ggcgagcttg ctgacgcgac tgcgcaggca
     6181 ttaaacgatc agcacaatcc atcgcccgca gccagtaaag cggattggtt tcggttgatt
     6241 taccttgcag cgcccagatg tcgctacatt cagtagaaag atagtcagcc agttgataaa
     6301 ccggaatttt ttcttctgct ggcgtatcaa tggctggctt attgtgattc tgcacgcaac
     6361 ccagcaatgc cagacatggc agccctgcca gccacagccg tcggggcaat aatcgttgaa
     6421 aaatgtgtcg catattcacc agacttaaag cctatcccag tgggcgtaat tgttgcagac
     6481 agtctggaca tggacagcgc ggagaaaccg gagcgtacat atcgtacgtg aagatttcga
     6541 gcactgcccg gggccgaact gacaaataaa atagcctgat aggataggct gttagcatta
     6601 tttcgtgttt ttcgacgacg gtaattcaat gcggaaacaa acgtcttgcc cgctctcgtc
     6661 gaccagatac agttcccctt gcatacggcg aatacaatcc ctggcaatgc ttaatcccag
     6721 accgctgccc ttcaccgccc cttttcgctg gtggcttccc tgaaaaaagg gttcgaagat
     6781 catggcgcgt tcctcttgcg gaatgggcgt gcctgtattg atgacatcaa tataaacccg
     6841 cgcaccatgt gaactgctgc gaaggcaaat gttaccggat tcagccccgt agtgcaccgc
     6901 attggagtaa agattatcca gtacgctcat cagcagcatt ggctccgcca ggcaagctgt
     6961 tgctttgaga tcgacgtcgg tatgcatcat tttagcccgt gcgggcaggc tatgagcaga
     7021 aaccactgtc tccaccagcg gtgctaattc aacattctcc agttccaccg cactgtccgc
     7081 ctgtttacgg ttgtaatcaa gcagttgttc gatcagtttt tgcaaattgc ggctgctgct
     7141 atcaagaatg ctcaccacct ctttttgctc tggcgtaagc ggcccgacaa cctggtcagc
     7201 cagtaattca gtgccctcgc gcatactcgc cagtggcgtt tttaattcat gagataaatg
     7261 tcttaaaaat tgatggcgtt gggattccag ccatgacagg cgctcactta accaaagaat
     7321 acgttgccca accgagcgta actcgctcgg tccactgaac gaaacgctat tgcccagaga
     7381 acgcccttcc cccagacggt tgatcatgcg ctcgatattt ttcaccggcc cgataatcat
     7441 ccgcgtgaaa agtagcacca tcaccagact caccagaaat agcaccagcg attgccaacc
     7501 aaaatattgc ccacgttcgg cgatttcacg ctgaagttgc tgcccacgag agaacaccac
     7561 tgtgcgcgtg gcctgcacca tttcggtatt ggcactggca aaggcttcaa gacgcgcggc
     7621 ggcggcagca tcgggaccac tgttgttaca ctgaagttgg gccagattgt tcaaatcctg
     7681 acgcaatgcc tggtaaagtt tatcgtctgg cagtacgcct gcgtgggcat cgagcatttc
     7741 gctgtaacgc ttgcgctggc tttgataaac cttcgcaagc gtagggtcgt ccagcacgca
     7801 atactgacgg tagctacgct ccatctccag cgccgcgttg gtcatcgctt cactacgccg
     7861 ggcatcaata agcgtagtgc ggttaaccag cgccgcctga tcgctaagcg cattcaggct
     7921 ttgccaggct tgccatgcca gcaccaacag gggtagtaga attagcaaaa atgccagcat
     7981 taccagttgt cgtaatgagc ggggaaaaac gggccagcgt ttcaaggtgt tactctcgtc
     8041 agacgcgaat agcctgatgc taaccgaggg gaagttcaga tacaacaaag ccgggaatta
     8101 cccggctttg ttatggaata aggcggtgcc taactcgacg tttcgcccga tggttgatat
     8161 agctacgctg atatcagaag ttggacggca ggcaccttgt tgtgcgtcat tcgaatttta
     8221 tgtagcacgt cccgaagggg ctgacataag tcggtgaatg agccactgct tactattatg
     8281 cagtaactgt gccaataaag aaaatagttt ggtaacgtac tgattatacg ttgctttgag
     8341 ggatttatgg cttcttcgct atttgaatgt aaatcagcca ctgtgtcgct aaaaagagac
     8401 aacttaagat aaacttatta gattgcaata aaatcaatca cttaagtgtc gccagaaggc
     8461 gacacggtaa cccacccatt gtcgtgattt acagacacaa aaaagctccc ggagttggga
     8521 gcttatgata gtggttggtg cttaatgccg catccgggct gcaaaaccaa tgaactgatg
     8581 aattacccca actgcttacg cgcattgcgg aaaatgcgca tccatgggcc atcctcgccc
     8641 cagttttccg gatgccagga gttgctgaca gtacggaaaa cacgttccgg gtgcggcatc
     8701 ataatggtga ctcgaccact ttcagtcgtg actgccgtaa taccgttcgg tgaaccgttc
     8761 gggttagccg ggtaggtttc agtgactttg ccgaagttat cgacatagcg cagtgccacc
     8821 agccctttgc tttccagtgc cgccagatgc gccgcatcac gcacttccac gcgcccttca
     8881 ccatgagaga cagcaatcgg catttgcgag cccaccatcc cctgcaacag cagagacggg
     8941 ctttgggtta cttcgaccag gctgaaacgc gcttcaaagc gatcggaggt attgcgcaca
     9001 aaacgtggcc acaactcact acctgggatc agttcgcgca ggttagacat catctggcaa
     9061 ccgttacata cccccagcgc cagcgtttgc ggacggtgga agaaggttgc aaactcatcg
     9121 cgtacacggt cattgaacag gattgacttc gcccaacctt caccggcacc cagcacatca
     9181 ccgtaggaga aaccaccgca cgcgaccagg gcgtggaaat cttccaggcc cgtgcgtccg
     9241 gtcagcaggt cactcatatg cacgtcgata gcatcaaagc ctgcacggtg gaaagctgcc
     9301 gccatttcaa catgcgagtt cacgccctgc tcacgcagta cggcaacttt cggacgtgcg
     9361 ccagtggcaa tatacggtgc tgccacatct tcgttgatat cgaacgacag ttttacattc
     9421 aggcccggat cggcgtcgtt agatttcgcc tgatgctcct gatcggcaca ctccgggttg
     9481 tcacgcaggc gctgcatctg ccaggtagtt tctgcccacc agacacgcaa cgtggtgcgg
     9541 ctttcgctga atacagtctg cccgttggcg gtaatcacaa aacggtcacc ggaaaccgcc
     9601 tgccctacat aatggacaca atcagcaagc ccatgctgtg ccagtacgga ctcgaccgct
     9661 tcacggtcag cggcacgaac ctgaatcacc gcacccagtt cttcgttaaa caacgccgcc
     9721 aggcgatcgt cgcccagaga ggcaatatcc gcgttaatgc cgcaatgacc agcaaaggcc
     9781 atttccgcca gcgttaccag caggccgcca tcagagcggt cgtggtatgc gagcagctta
     9841 cgctgtgcaa ccagcgcctg aatcgcgtca tagaagcctt tcagttgcgc gacgtcgcgt
     9901 acatctgccg gtttgtcgcc aagctgacga taaacctgcg ccagcgccgt tgcgcccagc
     9961 gcgttattgc ctttgcccaa atcaatcagc aatagtgcgt tatcttcggt agaaagctgt
    10021 ggcgtgatgg tgtgacgcac atcttccacg cgggcaaatg cagaaatcac cagcgacagc
    10081 ggcgacgtca tttcgcgctc ttcgttacct tcctgccagc gggttttcat cgacatagag
    10141 tctttaccca ccgggatcgt caggcccagc gccggacaaa gctcttcgcc cacggcttta
    10201 acggcttcat acaggcccgc atcttcacca gggtggcctg ccgccgccat ccagttggcg
    10261 gaaagtttaa tgcgtttgat atcgccaatc tgtgttgcgg caatattggt taacgcttca
    10321 ccgaccgcca gacgggcaga ggcggcgaaa tccagcagcg caaccggcgc acgctcgcca
    10381 atcgccatcg cttcaccgta gtagctgtcg aggctggcgg tagtgaccgc gcagttagcg
    10441 accggcacct gccacggacc caccatctga tcgcgcgcta ccatgccagt tacgctgcgg
    10501 tcaccgatgg tcaccaggaa agttttctcc gccacggtcg gcagatgcag tatgcgtttc
    10561 accgcgtctg caatggtgat cccttcacgg accagcgcat cgcccttcgc tttcagcgtt
    10621 tgtacatcgc gggtcatctt cggcgtttta ccaagtagga cgtccagcgg cagatcgatc
    10681 ggctgattat caaaatgacg atcgtgtaga gaaagatgca gttcttcggt cgcttcacca
    10741 atcaccgcgt agggtgcgcg ctcacgctta cacagttcgt caaacagcgg taattgatcg
    10801 gcagcaaccg ccagcacgta gcgttcctgg gattcgttac accagatttc cagcgggctc
    10861 atgcctggct cgtcgctcag aatgtcgcgc agttcaaatt taccgccacg cccgccgtcg
    10921 ctcaccagtt ccggcatagc gttagaaaga ccgcctgcgc caacgtcgtg gataaacagt
    10981 attgggttgg catcaccaag ctgccagcaa cggtcaatca cttcctggca gcgacgctcc
    11041 atctccgggt tgtcgcgctg tacggaagca aagtcgaggt cggcatcaga ctgaccagac
    11101 gccatggaag acgccgcgcc gccgccaaga ccgatgttca ttgccgggcc gccgagaacg
    11161 accagcttcg cgccaacgtt gatctcgcct ttttgtacgt gatcggcgcg aatgttgccg
    11221 atcccgcccg ccagcatgat cggtttgtga taaccgcgca gctcttcgcc gttgtggctg
    11281 ttcacttttt cttcataagt acggaagtag ccgttcagtg ccggacgacc aaattcgttg
    11341 ttaaacgccg caccgcccag cgggccttcg gtcatgatgt ccagcgcggt gacaatgcgc
    11401 tcaggcttac cgaaatcttc ttcccacggc tgttcgaagc caagaattcg caggttggaa
    11461 acggagaaac caaccaaacc cgctttcggc ttcgcgccgc gcccggtggc accttcatcg
    11521 cggatttcac cgccggaacc ggtcgccgcg cccggccacg gagaaatcgc cgtcgggtgg
    11581 ttgtgagttt cgactttcat cagaatatgc gccggttcct gatggaaatc atagcggccc
    11641 gtttcgtggt cagcaaagta gcggcccact tcagaacctt ccattacggc ggcgttatct
    11701 ttataagcag agagaacgtg atctggcgtg gtttcgaaag tatttttgat catcctgaac
    11761 agcgatttcg gctgttgttc accgtcgata atccagtcgg cgttaaaaat tttgtggcgg
    11821 cagtgctcag agttcgcctg agcgaacata tacagctcga tgtcgttcgg gttacgacca
    11881 agctttgtga aagcatcctg cagatagtca atttcatctt ccgccagagc caggccaaga
    11941 cgcaggttag cgtcgatcag cgcctgacgg ccctgcccca gcaaatcaac gcttgtgacc
    12001 ggagtcggtt gatggtgggc aaacaactgc tctgcatcat ctaaatcaaa aaagacagtt
    12061 tccatcatgc ggtcgtgcag ttcagcggta acctgctgcc attgttcatt ggtcagcgta
    12121 ccggcttcta tatagtaagc aacgccgcgc tcaaggcggt ttacctgttg tagcccgcag
    12181 ttatgggcaa tatcggtcgc tttcgaagac cagggagaga tggtgccagg acgcggggtc
    12241 accagcagga gtttgccttg cggggcgtgg ctggcgagtg ccggaccata tttcagcagg
    12301 cgttcaagtt gtgcgtgctc atcatcgttt aacggcgcat tgaggtcagc aaaatggaca
    12361 tactcggcgt aaatattgtg aaccgggagc ctggcagcct gaaaacgtgc cagcagtttg
    12421 ttgattcgga atgccgacag tgcaggcgaa ccacgcagaa tttccatcat aagtctctcg
    12481 tcttctaagc tttcggtgta cccaaggggg gaaacgggcg tcattataaa gaatctgatg
    12541 cgctgacgaa accgtttgcg tggaaataaa atcaccatcg tgaattagca acgcgtgccg
    12601 ccaatggctg taataagttg ccatctggcg caggtttacg caaaatgccg ctcatttatg
    12661 agtaaacctt tcactattat tacgtttttt caagctggga cgcgcacgac acagagaatt
    12721 aactaattga aaaaattaaa gattaattat ctgttcatcg gcattctggc actgctgctc
    12781 gcggtcgctc tctggccatc cattccctgg tttggtaaag ccgacaaccg tatcgccgcc
    12841 attcaagcgc ggggagagtt gcgtgtgagc accattcata ctcccctgac ttataacgaa
    12901 atcaacggga aaccttttgg cctggattac gaactggcga aacagtttgc cgattacctc
    12961 ggcgtaaaac tgaaagtgac cgtgcggcag aatatcagcc agctgtttga cgaccttgat
    13021 aatggtaacg ccgacctgct ggcggcagga ctggtctata acagtgagcg ggtaaaaaat
    13081 tatcagcctg gccctaccta ttattccgtg tcacaacaac tggtttataa agtgggtcag
    13141 tatcgcccac gtacgctgtg caacctgacg gcggagcaac tcaccgttgc accgggtcat
    13201 gtggtggtta acgatctcca gaccctgaaa gaaacaaaat tcccggaatt aagctggaag
    13261 gtagacgaca aaaaaggctc tgcggaatta atggaagatg tcatcgaagg aaaactcgat
    13321 tacaccattg ctgattctgt cgccatcagc ctgtttcagc gcgttcaccc ggagctcgcc
    13381 gtagcgctcg atatcaccga tgaacaaccg gtgacttggt ttagcccgtt agatggcgat
    13441 aatacccttt ccgccgccct gctcgacttc ttcaacgaaa tgaatgaaga cggtacgctg
    13501 gcacgcattg aagagaaata cctggggcat ggcgatgatt ttgattacgt cgatacgcgc
    13561 acatttttac gcgccgtcga tgcggtactg ccgcagttaa agcccctgtt tgagaaatac
    13621 gccgaagaaa ttgactggcg tttgctggcc gctattgctt atcaggaatc gcactgggat
    13681 gcacaggcca cttcaccgac gggtgtgcgc ggcatgatga tgttaaccaa aaataccgcg
    13741 caaagcctcg gcattacgga tcgtaccgat gccgaacaga gcatcagcgg tggcgtgcgt
    13801 tatttgcagg atatgatgag taaagtgccg gaaagtgtgc cggagaacga gcggatctgg
    13861 tttgccctcg ctgcgtacaa tatgggctat gcgcatatgc tggatgcccg cgccctgacg
    13921 gcaaaaacca aagggaatcc tgacagttgg gctgacgtaa aacagcgtct gcctttactt
    13981 agccagaaac cctattacag caagctgact tacggctacg ctcgtggaca tgaagcctac
    14041 gcttatgtcg aaaatattcg taagtatcaa attagcctgg tgggttatct gcaagagaaa
    14101 gagaagcagg ctacagaagc ggcgatgcaa ctggcgcagg attatccggc ggtatcggct
    14161 acggagttgg gcaaagagaa atttcctttt ctctcgtttc tttcccagtc gtcatcaaac
    14221 tatttgaccc attctccctc tctgctgttt tccaggaaag ggagtgaaga gaaacaaaat
    14281 taatccgtcg aggattgcgc ttttttctgc gctttaattt cctggcggcg catgcgaaag
    14341 aagtcactga gcaacgccgc gcactcatcc gccagtattc cttccgtaat ttccactcgg
    14401 tgattcatac ccggatgatg cagcacatcc attaaagatc ccgcagcgcc agttttcgcg
    14461 tcacgcgcac caaagaccac gcgaccaatg cgactgtgga tcatcgctcc ggcacacatt
    14521 acacatggtt caagcgtgac atacaacgtg gcgtcgatca gacgataatt ttgcatcacc
    14581 agaccaccct gccgcagggc catgatttct gcatgtgcgg tgggatcatg gcgaccaatc
    14641 gggcggttcc agccttcgcc gattacccga ttgttatgca ctaataccgc gccgaccggc
    14701 acttcccgct catcccaggc acgtttcgcc agcgtcagcg cgtgacgcat ccagtattcg
    14761 tggctaaatt cgacttcaga caaaaagaaa actccggtta taaaagcgcg gcgcattata
    14821 cacggacgct atgctttact ctattccagt tgctggagtt caccgcgcgg ggttactcgc
    14881 caacgatgct gacagaaata aagcagcgga ttgtcctgat tactgtcgct atagccactg
    14941 tacagccgca gcggagtgcc gattttgcgc tccagttgtg cgaccttttc atgtcccaga
    15001 caacgcatcg tcaataccca accaccatag ccacgctgaa tttggctggc gataagatta
    15061 acccgcggca gccagggcgt atcgaaataa accgcttcaa ccagcggctg cggagagccg
    15121 gtaatcaacc agatatcagc atcggaactt aacaggtagg tggttaatcg ctcctgaacc
    15181 agcggaaagg cggtaacatt gtcgcgaaac cagcgcacga aatcggcctg caacgtctgt
    15241 aaacgtgctt cgctgtgacc aaaagtgcac ccccacagaa gcagactcat cggccagcgt
    15301 gccgcacgac cttttatcaa taacgcaatg gctataatcg gtaacaacgg caggacaagt
    15361 aacgcattca gcggttggcg acgtagtaaa tagcgcagaa aactgccgaa catatcctgc
    15421 tgatgcaatg ttccatctaa gtcaaaaaac accacacgac gctcgtgagt tgccaaacca
    15481 tactcctctg gactgaaaca tcctgattaa ttttcgctac tacatagcct aacagataga
    15541 tcatcacttt tccggcaaca atcgaccgca tcatggctaa ctggaatttt taattcatgg
    15601 caattagcgg caatggaata taaaattcac tcgcgtgtgt ctcatattgc ctgttgtcgc
    15661 cactatttca tcgcgaggaa agatatgaac ggcttacttc gtatccgtca gcgttaccag
    15721 gggcttgccc agagtgataa aaaactggcg gattatctgc tgctacaacc tgatacggcg
    15781 cgccatttaa gctctcagca actggccaac gaagccggag tcagtcagtc cagcgtcgtg
    15841 aagttcgcgc aaaaactcgg ctataaaggt tttccggcgc ttaagttggc gttgagtgaa
    15901 gcgctggcaa gccagccgga atcgccctcc gtgcccattc ataaccaaat ccgcggtgat
    15961 gatccgttac ggctggtcgg cgaaaaactg attaaagaaa atactgccgc tatgtacgca
    16021 acgctaaacg ttaatagtga agagaaactg catgaatgcg taacaatgtt gcgctctgcg
    16081 cggcggataa ttctgaccgg tattggcgct tcgggtctgg tggcgcaaaa ctttgcctgg
    16141 aagctgatga agattggctt caatgctgcc gcagtgcgcg atatgcatgc gctactcgca
    16201 acagtacagg cgtcgtcccc tgacgatctg ttattagcca tttcctacac cggtgtacga
    16261 cgcgagttaa acctggcggc agatgagatg ctgcgagtgg gcggaaaagt gctggcgatt
    16321 accggcttta ctccgaatgc cctgcaacag cgtgcttctc attgcctgta taccattgcc
    16381 gaagaacaag cgacaaacag tgcttcaatc tctgcttgtc acgctcaggg aatgttaacg
    16441 gatttgctgt tcattgcgct gattcagcag gatctggaac tggcaccaga acgtattcgt
    16501 catagtgaag cgctggtgaa aaaactggtc tgagtaaaga atgcgcgtat aatgcccgcc
    16561 cggtttgtgt tgttttgaga gtttccttat ggcgttgtta atcactaaaa aatgcatcaa
    16621 ttgtgatatg tgtgaacccg aatgcccgaa tgaggcgatt tcaatgggag atcatatcta
    16681 cgagattaac agcgataagt gtaccgaatg cgtagggcac tacgagacac caacctgcca
    16741 gaaggtgtgc ccgatcccca atactattgt gaaagatccg gcgcatgtcg agacagaaga
    16801 acagttgtgg gataaatttg tgctgatgca ccacgcggat aaaatttaat attctactct
    16861 ggaagtagag tattaattat attactggga agccttaacg ccattatatt tatttaattg
    16921 atgacattag cataatcatt cactaagtta atttatatag tatctgccaa gacacttatt
    16981 tatagttatt aaaggcgcgt ccgattggtt caccggacgc accttaagta cgtttacttg
    17041 tgttataaga acagaaggat cagctgtaaa acagcaatga tgattttgat gacccgttta
    17101 atcaggtatc ggcaatcagt cattcgtttt tccttaaaca aggaatgcag ccgttcagat
    17161 tagcccttac atctccccaa aactgaacgt gcgagttatt gagggtgcat gctgcactcc
    17221 acaccagagc tttgacgaca ccactcgttt caatggggga attctgtggc atggtgtaaa
    17281 gcacagcaaa atcttcaata acgaagccaa ttttaatgta cttacgaatt ggcggtcacg
    17341 ttaatctttc catcaatatt gctttcttcg taaaggctcg agtttttatg ctaaagattg
    17401 caagttgctt gtaaaagata agtacactga tccataatcg ctgttgttga gggtgcatgc
    17461 tgcacaaaat taaagttaaa aagtaaaacc cccgttcctt accagttcgg gggttttact
    17521 ttttaaagag aacggtatta ttttaacttt caataattac cgtggcacaa gcatagtggc
    17581 gttcatctgc cagcgttaca tgcatattta caacgccgag cttttccgcc agttttaatg
    17641 cctcacccca tagccgtagc cgtggtttgc cgagctcatc attgaatact tcaaattgat
    17701 taaacgccag accattgcgg atcccggtgc caaacgcttt tgctgcggct tctttcacag
    17761 caaaacgctt cgccagaaaa cgcaccggct ggtggtgcgt tttccagatt gcccattcgt
    17821 tatcgcttaa tacgcggcgt gccaggcgct caccggatcg ggcgatcact gcttctatgc
    17881 gagcgatctc tacgatatcc gtgcctaaac ctaatattgc cattagccac gcgcttccag
    17941 catcagacgc ttcatttctg ccaccgcatc tttcagtccg gtcatcactg cacggccaat
    18001 aatggcatga ccgatattca gttcatgcat ctcagggatg gcggcaatgg ctttcacgtt
    18061 gtgataggtc agaccgtgtc cggcgttaac tttcagaccg agactagcgg caaaggtcgc
    18121 ggctttggcg atacgcacca gctcttgcgc ctgttcggcg tcagttttgg catcagcata
    18181 gcaaccggtg tggatctcga taaacggtgc gccaacctct gccgcagctt tgatctgctc
    18241 ttcatcggcg tcgataaaga gagaaacctg aatcccggca tctgtcagac gtttgcaggc
    18301 atcgcgcatt ttttcacgct gccctgcaac gtccaggccg ccttcggttg ttacttcctg
    18361 acgcttttcc ggtaccaggc agcaaaaatg tggcttcgtc tcaacggcga tcgccagcat
    18421 ctcttcggtc actgccatct ccagattcat tcgggtatcc agcgtctgcc gcaggatgcg
    18481 cacatcgcgg tcagtaatgt ggcggcgatc ttcacgtaaa tgcacggtaa tgccgtccgc
    18541 tcccgcctgc tcggcaataa acgccgcctg caccggatcc gggtaagcag taccgcgtgc
    18601 gttacgcagc gttgcaatat ggtcaatgtt gacgcctaac agtaattcag ccatgacaat
    18661 cctcatcatt cataatgtgt tttcaccgtt cgcttaggca taaactgccg gaacagttcc
    18721 ctgctcttta atggtttacc gccaagatac ggcttaagcg ccatgcgggt aaagcgtttc
    18781 gcggcgcgta gtgtgtctgc gtcaggaaat tcccgcgcgt ttaacgcttt taactgcctt
    18841 ccggtgaacg ttttattgtc gataacgacg cttgcgataa accctttttc ttcgcgataa
    18901 cgatacgtca tggtgtcatc taccggctcg ccgctacccg cgcaataggt aaaattgacg
    18961 ccatagccca gatgcccgag cagtgccagt tcaaagcggc gcagcgcggg ttctggcgta
    19021 ccagtggcac ctgcaagaga ctgaatgcag tgcaaataat cgaaaaagag ttcagagaag
    19081 cgcgtctcgt attccagtac gcgggagaga agttcgttga tgtacagacc gctgtaaagc
    19141 gtgataccgc ttaatggcag cgccagcgag acggcttcag cactgcgcag cgttttgact
    19201 tcgccacgcc cgccgaaacg tagcaagaga ggggtgaaag gctgtaatgc acctttcaga
    19261 gtagagcgtt tagagcgtgc gcctttggca accagacgca cgcgacccga ttcctccgtg
    19321 aagacgtcca gcatcaggct ggtttcgctc cacgggcgac tatgcaggac aaatgcgcgc
    19381 tgccagcctt ccatcggagt gactcttaaa gatcgtcaac gtaaccgaga ctgcgcagtg
    19441 cgcgttcgtc gtcggcccaa ccggatttca cttttaccca cagttcaagg tggacaggcg
    19501 cttcgaacat ttcctgcatg tctttacgcg cttcaatccc gatggttttg atcttggccc
    19561 ctttgttgcc aataaccatc ttcttctgcc cttcacgctc aacgagaatc aaaccattga
    19621 tgtcataacc accgcgttcg ttagagacga aacgttcgat ctccacggtc acggagtacg
    19681 gcagttcagc gccgaggaaa cgcatcagtt tttcgcggat gatttcagac gccataaaac
    19741 gctgtgagcg atcggtgatg taatcttccg ggaagtgatg ggtcgcttca ggcagatgct
    19801 tacgcacgat tgctgcgata gtgtcgacat tcagcccggt ttcagcagag atcggcacga
    19861 tatcgaggaa gttcatctga cttgccagga actgtaagtg cggcagcaga tcggcttttt
    19921 cctgcacgtt atccactttg ttcaccgcga ggatcaccgg cgctttgcca tcgcgcagtt
    19981 tgttgagcac catttcgtcg tccggcgtcc agcgggtgcc ttcaacgaca aaaatcacca
    20041 gctcaacgtc gccaatagag ctgctcgccg ctttgttcat caggcggtta atagcgcgtt
    20101 tttcttccat atgcaggcca ggggtatcaa cgtagatcgc ctgatacgcg ccttcagtat
    20161 ggatccccac aatgcggtga cgagttgttt gcgctttgcg ggaggtgatg gagatcttct
    20221 gccccagcag tttgttcaac aatgtggatt tgccaacgtt cggacgtccg acgatggcaa
    20281 taaatccgca gtaactttta tcgatgctca ttccagctcc agttttttca acgcctgttc
    20341 ggcggcagcc tgctcagcct tacgacggct tgaacctgtg ccaaccaccg gttcactcag
    20401 gccgctgacc tggcagtgga tagtaaattc ctgatcgtgc gcttcgccac gtacctggac
    20461 taccagataa gtcggcagcg gcagatggcg accctgcaaa tattcttgca agcgcgtttt
    20521 cggatctttt tgtttatcgc ctgggctaat ttcgtccaaa cgagtttgat accagttgag
    20581 gattaatttc tcgacggttt gaatatcact gtcgaggaat acgccaccaa ttaatgcttc
    20641 gacggtatcg gcgagaattg actcacgacg aaatccaccg cttttaagtt cacctggccc
    20701 taaacgtaag cactcgccta actcaaattc gcgcgccagt tccgccagcg tattgccacg
    20761 gaccagcgtg gcgcgcatcc ggctcatatc gccttcatcc acacgaggga aacggtgata
    20821 aagcgcattg gcgataacgt agctcagaat agagtcgcct aaaaattcta aacgctcgtt
    20881 atgtttgctg ctggcactac gatgagttaa tgcctgctgc aacagttcct gatgattaaa
    20941 agtgtagccc agcttccgtt gaagccgatt aattacgatg gggttcatgc gataccaata
    21001 aataaatgcg tcaacaattc agcacacgaa acagacctga tatacatggc tctgctaact
    21061 gcttcgctgc agtttcagtt taccggtata tggggaccaa cgctgtttcg tgtgccgtgg
    21121 caacctggag gtgccaacct taaacttcgg gggaatattc tatacacaac gacgggggat
    21181 gtcgttagcc acgggagatt tatctcataa ataattcacg ttgtcgccat aacggcgaca
    21241 acgtgaacga agatgggcta ttaatggatg ccgccaatgc gacttaagcg cacacctgtc
    21301 ggccattcgc cttcttgctt atcgaaactc atccagatag ccgttgcccg accgaccaga
    21361 ttcgcttcag gcacaaaacc ccagtaacgg ctgtccgcgc tgttgtcgcg gttgtcgccc
    21421 atcatgaagt attgtcccgg cggaacaatc caggttgcca gttgttgccc tggctgctgg
    21481 taatacatcc ccacctggtc ctgcgcaatc ggcactgtca gaattcggtg cgtcacatca
    21541 cccagtgtct ctttacgctc ggaaagacga attccatttt ctttggtttc gtttttcggc
    21601 acttcaaaga atccgctggt cgcttcccca ccattacggc gtgagaaggt ctgaacgaaa
    21661 tcgctcggtt ccacgttgga gtaggtgacc ggtagcgcgt tttcacacgc ctggccggaa
    21721 ctgcatcccg gttgaatcgt cagctctttt gagaccggat cgtaagtgac tttatcgccc
    21781 ggtaaaccca ccgcgcgctt gatgtaatca agctttggat cttccggata tttaaagacc
    21841 acgatatcgc cgcgtttcgg atgaccggtt tcgatcagcg ttttctggta gataggatct
    21901 ttaatgccat aagcaaactt ctctaccaga ataaaatcac cgattaacag agtcggcatc
    21961 atcgaacctg acgggatctg gaacggttca taaataaacg aacgtacaat caatacgata
    22021 gccagcaccg gaaaaacaga agcaccggtt tccagccagc caggcttcgg cgcaaccttt
    22081 ttcagggttg ctttatccag tgagtcaccg gcagccgcct gcgccgctgc ctgacgttcc
    22141 cgacgtttag gtacgaaaaa gaatttatcc acgcaccata aaatgcccgt caccagtgtg
    22201 gcaatcacca gaatcagggc aaacatattc gccatgccaa ctcctaaggg ttatttgttg
    22261 tctttgccga cgtgcagaat ggcgaggaac gcttcctgcg gcagctcgac gttaccgatc
    22321 tgcttcatgc gtttcttacc ttctttctgc ttctgcagca gctttttctt acggctgata
    22381 tcgccgccat aacatttagc cagtacgttt ttacgcagct gtttcacggt ggatcgcgca
    22441 ataatgtgcg taccaatcgc tgcctgaatg gcgatatcaa actgctggcg tgggatcaga
    22501 tctttcatct tctccaccaa ctcgcgaccg cggttttgcg aattatcacg gtgggtgatc
    22561 agcgccaacg catcaacacg ttcaccgttg attaatacgt ctacacgtac catgtcggac
    22621 gcctggaagc gtttgaagtt gtaatccaga gacgcataac cacgcgaggt agatttcagg
    22681 cgatcgaaga agtcgagcac cacttccgcc atcgggatct cgtacgtcag cgccacctga
    22741 ttaccgtggt aaaccatatt ggtctgcacg ccgcgttttt ctacgcacag cgtaataacg
    22801 ttgccgagat atgcctgcgg cagcagcatg tgacactctg caatcggctc gcgcagttcg
    22861 taaatgttat ttaccgcagg cagcttggat gggctgtcga cgtagataac ttcccttgac
    22921 gtggtttcaa cttcatacac tacggtcggc gcagtggtga tcagatccag atcgtattca
    22981 cgttccagac gttcctggat gatctccatg tgcagcaggc caaggaagcc gcagcggaaa
    23041 ccaaagccca gcgcgctgga gctttccggc tcatagaaca gtgaggcatc attcaggctg
    23101 agtttaccca gcgcgtcacg gaaggcttca tagtcgtcgg aacttaccgg gaacagaccg
    23161 gcgtatacct gcggtttgac tttcttaaag ccaggcagcg ccttttctgc cggattacgc
    23221 gccagcgtta aggtatcgcc gactggagcg ccgtggatat ctttaatcgc acataccagc
    23281 cagcctactt cgccacattt cagttcagtg cggtcaacct gtttcggcgt gaagatgccc
    23341 agacggtcgg cgttataggt ctgcccggta ctcatgactt tcactttgtc gcccttacgc
    23401 agggtgccgt ttttaatacg gataagtgaa acaacgccca ggtagttgtc gaaccatgag
    23461 tcgataatta gtgcctgcaa cgggccttcc ggatcgcctt ccggcggcgg aatgtcgcgc
    23521 accagacgtt cgagaacgtc ctgcacgcca acgccggttt tcgctgaaca gcgcaccgcg
    23581 tcagtggcgt cgatgccgac gatatcttca atttcttccg ccacgcgttc aggatcggct
    23641 gccggcaggt caatcttgtt cagtactggc accacttcga gatccatttc catggcggtg
    23701 tagcagtttg ccagggtttg cgcttccacg ccctgcccgg cgtcgaccac cagcaatgca
    23761 ccttcacagg cagccagcga acgggaaact tcataggaga agtctacgtg gcccggggtg
    23821 tcgataaagt taagctgata ggtttcgccg tcagacgctt tgtagtccag cgtcacgctt
    23881 tgcgctttga tggtaatgcc acgctcacgc tcaagatcca tggaatcgag aacctgcgcc
    23941 tccatttcac ggtcagacag gccaccgcag atctggataa tacggtcaga cagcgtcgat
    24001 ttaccgtggt caatgtgagc tatgatcgaa aagttacgta tattcttcat aaagtatgat
    24061 tattgtgcct taatgcccgg ttaaccaggc ttttagaagt cgctgttctg agcttaacgt
    24121 ctgtattaat agaaacgccg cattctacac tacaacattg aggcgaggaa atgttcatac
    24181 cgtatggatt gtggtatctg gaaacgtcct cgcatttgtt atgcaaaatg caacaaagcc
    24241 agtgaaatca ctggctcgcg tcttccgaag atgtttcaaa tcgcacaagg ccaggcggca
    24301 atgccacgct taagatgatc ggttgccatt ctgcccgggc agcaaactta cgcgagtagc
    24361 cgcgcgcaat caggaacccg ccaataccgc cgaggaccgc accacataat gctgcgacgt
    24421 cagaagcaaa gagtagctga aatagcgaag cgatgaggaa taatcccacc agcggcgaca
    24481 tataaaccag taatgcggag ctaagcaggc tgccttcggc gatccccaat tccacttttt
    24541 gccccggcac taacggttca tcacagggta cgacaatggt atgcgtggtt tgcgggccaa
    24601 gtttattcaa cacgcggcta ccgcaaccgg cgcgtgaagc gcagctgctg catgaagctt
    24661 taacatcaca actgaccagc gcctgcccgt tttgccagga gacgacggta gcccactctt
    24721 tgatcattgc gctgccccga acttaatatt ctcggcaatg cgtttcgccg tttgcggcgg
    24781 cagttcaccg acaatggtga tttcggcgtt atcacgtacg cttgtactga cggttctgcg
    24841 tccggtgcgc aacatctgat cggtgctcga tggcgtagcg cggttaacgt ttaccgagaa
    24901 gctgaataat ccgtcagaat agagacgtga ttcgataggc atgttgtcca tcgtcggtag
    24961 cggacgtcga ctactggaaa cttcgctaaa accctgtggc aaccaggttg gcgtccagct
    25021 gaatttagct ttttcaccta caggaacaga aagcaacggc ggcaaatttg ccttcgccag
    25081 cgtctgcata ctgctgctga tatcctgatt gacgttaaaa gcaatcacgc gaaattgttc
    25141 cagcgtttca ccatcgcgat caaggagatc aacccgcatc ggtaatttcg attcggtgtc
    25201 catccacacg atgtagctgt agcgtgtacc atctcgggca accacgcgaa tgacttcgca
    25261 aagacgatca gcaatacgcg tgcgcccgac ggagataaag tcgtagtaag gagaaaggcg
    25321 tttgaaatcg gtatagatga gcgatggcag agaatcaaca atgtaatcgc cattaagcgt
    25381 gaacggttca agtcccggtt caaaatagct gatttcatcg ccgcgctgta ccacttcccg
    25441 gcgcgggcca tccatttgca acaattgtgc aagaggacgg ttatcgaggc gtgcatgtcg
    25501 ataacgcaga gactcaacac cctgtttatt gatgctgatg aatgacagct cgtaattcag
    25561 tgactgactg gccaggttca tctgctgtaa taacgccccg gacgcgggag tggccgaggc
    25621 gttagcagag aataacaggc tacctgtcac taatgacatg gcaaaccaaa gttgcttcat
    25681 tactgcgatt gcgttcctaa agtttgaatt cctggcacct gtacagcggc ttgctgggtt
    25741 tgcgcctgct caaactgaag ctgttcagag tggagtcggc gttgcagttc gtaatcctgc
    25801 aacattgcat taatgcgacg acgctgctcc tgtacctgct gctgttgacc attgtttgcg
    25861 gtcgcttcag aaggtactcc caggcttacc gggctggctt tacccatcat cggcagtgta
    25921 ttaaataccg gcgtttcggg ctgctgggac gtttcagatt gtccattata gtgctggacg
    25981 ccaacgataa ctgcaagcga tacgcatgct gctacgccca tttgggtaag ctgtgccgcc
    26041 cacggacgta ctttctgcca gaatggcatt ttctgccatt gatgcggcgc aggctgggct
    26101 tccgggatca atgtcgccgg ttgacgtact ggctcttctt caatggcggc catcacgcgt
    26161 gaagagatat cgaaatggag cacctcggga gtatcacccc gcattgagtc acggattaag
    26221 tgatagcttt cccaggtttt ctgcatttct gggttatgag ccagttcgtt aagcagctca
    26281 ctatccagcg tttcgccatc cattaaagcg gaaagttgtt ctttctgcat gcctaatacc
    26341 cttatccagt atcccgctat cgtcaacgcc tgataagcgg ttgaactttg ttatcaatag
    26401 cttccctcgc tcggaagata cgtgaacgca ccgtacctac cggacaatcc atgatagcgg
    26461 ctatctcttc atagctcagg ccatccagct cccgcaaggt tattgccatg cgcaaatctt
    26521 ccgggaggga ctcaatagtt cggaaaacta tctgtctcag ttcttctgac aacattaagt
    26581 tctcagggtt cgaaatttct ttcaacgcgc cgccactttc gaagttttca gcttcaatgg
    26641 catccacatc actggaaggt ggacgacgcc cctgagcaac caggtaattt ttcgctgtat
    26701 ttacagcaat ccgatacagc catgtataaa aagcgctatc tccccggaac gaatccagcg
    26761 cacgataggc tttaataaaa gcttcttgta ccacatcggg aacatcaccc gacagcacat
    26821 agcgggaaac cagactcgcc actttatgct gatagcgcac taccagtaag ttaaaggctt
    26881 tctgatctcc cttctggacc cgttcaacca ggacctggtc cgttaactgc tcgctcatcc
    26941 gaggtaaagt ctccccaaac caaatttcca cgcgctatcg aaacgccact ccattagctg
    27001 caatttgagc aagcaaaggg ttagagtgtc tcgtttttgt aaagttccgt aacgcatctg
    27061 tttttgtttg tcatgctgta gacggatcat tatctatcat tataagtcta cagaatctga
    27121 acatcgcatt atctgtgtag aaatgcccat ttaactgcct gaagagtaac ccaacggcct
    27181 ttttatttca ccacctaatc ctccaccagc cagtaacttc tctttttctc gccgccctgc
    27241 atcagcgtgt ttagcaactg taacaaatat taaaatagca ggtgtttatt cgcacaacat
    27301 gatgctatac cgaccaaacc gtgtttagta aattaaacaa agaaaatgaa tactctccct
    27361 gaacattcat gtgacgtgtt gattattggt agcggcgcag ccggactttc actggcgcta
    27421 cgcctggctg accagcatca ggtcatcgtt ctaagtaaag gcccggtaac ggaaggttca
    27481 acattttatg cccagggcgg tattgccgcc gtgtttgatg aaactgacag cattgactcg
    27541 catgtggaag acacattgat tgccggggct ggtatttgcg atcgccatgc agttgaattt
    27601 gtcgccagca atgctcgttc ctgtgtgcaa tggttaattg accagggggt tttgtttgat
    27661 acccacgttc aaccgaatgg cgaagaaagc taccatctga cccgtgaagg tggacatagt
    27721 caccgtcgta ttcttcatgc cgccgacgcc accggtagag aagtacaatc cacgctggtg
    27781 agcaaggcgc agaaccatcc gaatattcgt gtgctggagc gcagcaacgc agttgatctg
    27841 attgtctctg acaaaattgg cctgccgggc acgcgac
//
LOCUS       DADMHM010000038        27554 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.039, whole genome shotgun sequence.
ACCESSION   DADMHM010000038 DADMHM010000000
VERSION     DADMHM010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 27554)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27554)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27554
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.039"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            436..3621
                     /gene="rne"
                     /locus_tag="JN125_001390"
     CDS             436..3621
                     /gene="rne"
                     /locus_tag="JN125_001390"
                     /EC_number="3.1.26.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E"
                     /protein_id="HAY8871223.1"
                     /translation="MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKG
                     KITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIV
                     QIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALANLEL
                     PEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAF
                     RDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIE
                     SAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQL
                     RLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRL
                     SPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASY
                     LLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEE
                     AMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPA
                     QPGLLSRFFGALKALFSGSEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRD
                     TRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTDEQQAPRRERSRR
                     RNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAV
                     VAPVVEETAAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRS
                     RRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQV
                     EEQREQEEVQVQPMVTEVPVAAAVEPVVSAPVVEEMAEVVEAPVPVAEPQPEVVETTH
                     PEVIAAAVTEQPQVITESDVAVAQEVAEHAEPVVEPQEETADIEEVAETAEVVVAEPE
                     VVAQPAAPVVAEVAAEVETVAAVEPEITVEHNHATAPMTRAPAPEYVPEAPHHSDWQR
                     PTFAFEGKGAAGGHTATHHASAAPARPQPVE"
     gene            complement(3818..4771)
                     /gene="flgL"
                     /locus_tag="JN125_001391"
     CDS             complement(3818..4771)
                     /gene="flgL"
                     /locus_tag="JN125_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-filament junction protein FlgL"
                     /protein_id="HAY8871224.1"
                     /translation="MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPI
                     AASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTL
                     SDDDRASLATDIQGIRDQLLNLANTTDGNGRYIFAGYKTETAPFSEEKGKYVGGAESI
                     KQQVDASRSMVIGHTGDKIFDSITSNAVAEPDGSASETNLFAMLDSAIAALKTPVADS
                     EADKEIAAAALDKTNRGLKNSLNNVLTVRAELGTQLNELESLDSLGSDRALGQTQQMS
                     DLVDVDWNATISSYIMQQTALQASYKAFTDMQGLSLFQLNK"
     gene            complement(4783..6426)
                     /gene="flgK"
                     /locus_tag="JN125_001392"
     CDS             complement(4783..6426)
                     /gene="flgK"
                     /locus_tag="JN125_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HAY8871225.1"
                     /translation="MSSLINNAMSGLNAAQAALNTASNNISSYNVAGYTRQTTIMAQA
                     NSTLGAGGWVGNGVYVSGVQREYDAFITNQLRAAQTQSSGLTARYEQMSKIDNMLSTS
                     TSSLATQMQDFFTSLQTLVSNAEDPAARQALIGKSEGLVNQFKTTDQYLRDQDKQVNI
                     AIGASVDQINNYAKQIASLNDQISRLTGVGAGASPNNLLDQRDQLVSELNQIVGVEVS
                     VQDGGTYNITMANGYSLVQGSTARQLAAVPSSADPSRMTVAYVDGTAGNIEIPEKLLN
                     TGSLGGILTFRSQDLDQTRNTLGQLALAFAEAFNTQHKAGFDANGDAGEDFFAIGKPA
                     VLQNTKNKGDVAIGATVTDASAVLATDYKISFDNNQWQVTRLASNTTFTVTPDANGKV
                     AFDGLELTFTGTPAVNDSFTLKPVSDAIVNMDVLITDEAKIAMASEKDAGDSDNRNGQ
                     ALLDLQSNSKTVGGAKSFNDAYASLVSDIGNKTATLKTSSATQGNVVTQLSNQQQSIS
                     GVNLDEEYGNLQRFQQYYLANAQVLQTANAIFDALINIR"
     gene            complement(6492..7445)
                     /gene="flgJ"
                     /locus_tag="JN125_001393"
                     /pseudo
     CDS             complement(6492..7445)
                     /gene="flgJ"
                     /locus_tag="JN125_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415599.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly peptidoglycan hydrolase FlgJ"
     gene            complement(7445..8541)
                     /locus_tag="JN125_001394"
                     /pseudo
     CDS             complement(7445..8541)
                     /locus_tag="JN125_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415598.3"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
     gene            complement(8553..9251)
                     /gene="flgH"
                     /locus_tag="JN125_001395"
     CDS             complement(8553..9251)
                     /gene="flgH"
                     /locus_tag="JN125_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HAY8871226.1"
                     /translation="MQKNAAHTYAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPT
                     PVANGSIFQSAQPINYGYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSVNASRDGKT
                     NFGFDTVPRYLQGLFGNARADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGN
                     LHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNTVSSTQVVDARIEYVGNGYINEAQN
                     MGWLQRFFLNLSPM"
     gene            complement(9304..10086)
                     /gene="flgG"
                     /locus_tag="JN125_001396"
                     /pseudo
     CDS             complement(9304..10086)
                     /gene="flgG"
                     /locus_tag="JN125_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006819466.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
     gene            complement(10224..10979)
                     /locus_tag="JN125_001397"
     CDS             complement(10224..10979)
                     /locus_tag="JN125_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgF"
                     /protein_id="HAY8871227.1"
                     /translation="MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV
                     PVEGLSLPTRTLVTASTPGADMTPGKIDYTSRPLDVALQQDGWLAVQTADGSEGYTRN
                     GSIQVDPTGQLTIQGHQVIGEAGPIAVPEGAEITIAADGTISALNPGDPANTVAPVGR
                     LKLVKATGSEVQRGDDGIFRLSAETQATRGPVLQADPTLRVMSGVLEGSNVNAVAAMS
                     DMIASARRFEMQMKVISSVDDNAGRANQLLSMS"
     gene            complement(10999..12927)
                     /gene="flgD"
                     /locus_tag="JN125_001398"
                     /pseudo
     CDS             complement(10999..12927)
                     /gene="flgD"
                     /locus_tag="JN125_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706995.3"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook assembly protein FlgD"
     gene            complement(12939..13343)
                     /gene="flgC"
                     /locus_tag="JN125_001399"
     CDS             complement(12939..13343)
                     /gene="flgC"
                     /locus_tag="JN125_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001740734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HAY8871228.1"
                     /translation="MALLNIFDIAGSALTAQSQRLNVAASNLANADSVTGPDGQPYRA
                     KQVVFQVNAAPGAATGGVKVADVIESQAPDKLVYEPGNPLADAKGYVKMPNVDVVGEM
                     VNTMSASRSYQANVEVLNTVKSMMLKTLTLGQ"
     gene            complement(13347..13763)
                     /gene="flgB"
                     /locus_tag="JN125_001400"
     CDS             complement(13347..13763)
                     /gene="flgB"
                     /locus_tag="JN125_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HAY8871229.1"
                     /translation="MLDKLDAALRFQQEALNLRAQRQEVLAANIANADTPGYQARDID
                     FASELKKVMQRGRDATSVVALTMTSTQHIPAQALTPPTAELQYRIPDQPSLDGNTVDM
                     DRERTQFADNSLQYQMSLSALSGQIKGMMNVLQSGN"
     gene            13919..14578
                     /gene="flgA"
                     /locus_tag="JN125_001401"
     CDS             13919..14578
                     /gene="flgA"
                     /locus_tag="JN125_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation protein
                     FlgA"
                     /protein_id="HAY8871230.1"
                     /translation="MLAIKRSVAIIAILFSPLSAASNLTSQLHTFFSAQLVGVSDEVR
                     VSIRTAPNLLPPCEQPLLSMSNNSRLWGNVNVLARCGNDKRYLQVNVQATGNYVVAAM
                     PIVRGGKLEAGNVKLKRGRLDTLPPRTVLDINQLVDAISLRDLSPDQPIQLTHFRQAW
                     RVKAGQRVNVIASGDGFSANAEGQALNNAAVAQNARVRMVSGLVVSGVVDADGNILIN
                     L"
     gene            14654..14989
                     /gene="flgM"
                     /locus_tag="JN125_001402"
     CDS             14654..14989
                     /gene="flgM"
                     /locus_tag="JN125_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma-28 factor FlgM"
                     /protein_id="HAY8871231.1"
                     /translation="MSIDRTSPLNPVSTVQPRETTDAPVTNTRAAKTTDSTSTSTSTS
                     TSTSTSTSTSVTLSDAQAKLMQPGSSDINLERVEALKLAIRNGELKMDIGKIADALIN
                     EAQQDLQSN"
     gene            14994..15410
                     /gene="flgN"
                     /locus_tag="JN125_001403"
     CDS             14994..15410
                     /gene="flgN"
                     /locus_tag="JN125_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis chaperone FlgN"
                     /protein_id="HAY8871232.1"
                     /translation="MTRLAEILDQMSAVLNDLKTVMDQEQQHLSMGQINGSQLQWITE
                     QKSSLLATLDYLEQLRKKEPNTANSVDISQRWQEITVKTQQLRQMNQHNGWLLEGQIE
                     RNQQALEMLKPHQEPTLYGANGQTSTTHRGGKKISI"
     gene            complement(15450..16985)
                     /gene="murJ"
                     /locus_tag="JN125_001404"
     CDS             complement(15450..16985)
                     /gene="murJ"
                     /locus_tag="JN125_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706990.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HAY8871233.1"
                     /translation="MNLLKSLAAVSSMTMFSRVLGFARDAIVARIFGAGMATDAFFVA
                     FKLPNLLRRIFAEGAFSQAFVPILAEYKSKQGEDATRVFVSYVSGLLTLALAVVTVAG
                     MLAAPWVIMVTAPGFADTADKFALTSQLLKITFPYILLISLASLVGAILNTWNRFSIP
                     AFAPTLLNISMIGFALFAAPYFNPPVLALAWAVTVGGILQLVYQLPHLKKIGMLVLPR
                     INFHDAGAMRVVKQMGPAILGVSVSQISLIINTIFASFLASGSVSWMYYADRLMEFPS
                     GVLGVALGTILLPSLSKSFASGNHDEYNRLMDWGLRLCFLLALPSAVALGILSGPLTV
                     SLFQYGKFTAFDALMTQRALIAYSVGLIGLIVVKVLAPGFYSRQDIKTPVKIAIVTLI
                     LTQLMNLAFIGPLKHAGLSLSIGLAACLNASLLYWQLRKQKIFTPQPGWMAFLLRLVV
                     AVLVMSGVLLGMLHIMPEWSLGTMPWRLLRLMAVVLAGIAAYFAALAVLGFKVKEFAR
                     RTV"
     gene            complement(17191..18018)
                     /locus_tag="JN125_001405"
     CDS             complement(17191..18018)
                     /locus_tag="JN125_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000736136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HAY8871234.1"
                     /translation="MKKLRIGVVGLGGIAQKAWLPVLAAASDWMLQGAWSPTRAKALP
                     ICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRD
                     AERLVELAARKKQTLMVGFNRRFAPLYGELKTQLATAASLRMDKHRSNSVGPHDLYFT
                     LLDDYLHVVDTALWLSGGKASLDGGTLLTNDAGEMLFAEHHFSAGPLQITTCMHRRAG
                     SQRETVQAVTDGALIDITDMREWREERGQGVVHKPIPGWQSTLEQRGFVGCARHFIE"
     gene            complement(18020..18667)
                     /locus_tag="JN125_001406"
     CDS             complement(18020..18667)
                     /locus_tag="JN125_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF480 domain-containing protein"
                     /protein_id="HAY8871235.1"
                     /translation="MKYQLTALEARVIGCLLEKQVTTPEQYPLSVNGVVTACNQKTNR
                     EPVMNLSESEVQEQLDNLVKRHYLRTVSGFGNRVTKYEQRFCNSEFGDLKLSAAEVAL
                     ITTLLLRGAQTPGELRSRAARMYEFSDMAEVESTLEQLANREDGPFVVRLAREPGKRE
                     SRYMHLFSGEVEDQPAVTDMSNAVDGDLQARVEALEIEVAELKPRLDSLLAHLGD"
     gene            complement(18678..19262)
                     /gene="rimJ"
                     /locus_tag="JN125_001407"
     CDS             complement(18678..19262)
                     /gene="rimJ"
                     /locus_tag="JN125_001407"
                     /EC_number="2.3.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S5-alanine
                     N-acetyltransferase"
                     /protein_id="HAY8871236.1"
                     /translation="MFGYRSNVPKVRLTTDRLVVRLVHDRDAWRLADYYAENRHFLKP
                     WEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFGLFDPDEKEIIGVANFSNVVRGSF
                     HACYLGYSIGQKWQGKGLMFEALTAAIRYMQRTQHIHRIMANYMPHNKRSGDLLARLG
                     FEKEGYAKDYLLIDGQWRDHVLTALTTPDWTPGR"
     gene            19498..20706
                     /gene="mdtH"
                     /locus_tag="JN125_001408"
     CDS             19498..20706
                     /gene="mdtH"
                     /locus_tag="JN125_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415583.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtH"
                     /protein_id="HAY8871237.1"
                     /translation="MSRVSQARNLGKYFLLIDNMLVVLGFFVVFPLISIRFVDQMGWA
                     AVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMGIAHEPWLL
                     WFSCLLSGLGGTLFDPPRSALVVKLIRPQQRGRFFSLLMMQDSAGAVIGALLGSWLLQ
                     YDFRLVCATGAVLFVLCAAFNAWLLPAWKLSTVRTPVREGMTRVMRDKRFVTYVLTLA
                     GYYMLAVQVMLMLPIMVNDVAGAPSAVKWMYAIEACLSLTLLYPIARWSEKHFRLEHR
                     LMAGLLIMSLSMMPVGMVSGLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSY
                     MGFSRLGLAIGGAIGYIGGGWLFDLGKSAHQPELPWMMLGIIGIFTFLALGWQFSQKR
                     AARRLLERDA"
     gene            20770..21417
                     /gene="grxB"
                     /locus_tag="JN125_001409"
     CDS             20770..21417
                     /gene="grxB"
                     /locus_tag="JN125_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 2"
                     /protein_id="HAY8871238.1"
                     /translation="MKLYIYDHCPYCLKARMIFGLKNIPVELHVLLNDDAETPTRMVG
                     QKQVPILQKDDSRYMPESMDIVHYVDKLDGKPLLTGKRSPAIEEWLRKVNGYANKLLL
                     PRFAKSAFDEFSTPAARKYFVDKKEASAGNFADLLAHSDGLIKNISDDLRALDKLIVK
                     PNAVNGELSEDDIQLFPLLRNLTLVAGINWPSRVADYRDNMAKQTQINLLSSMAI"
     gene            21551..22111
                     /locus_tag="JN125_001410"
     CDS             21551..22111
                     /locus_tag="JN125_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HAY8871239.1"
                     /translation="MNKFLFAAALIVSGLLVGCNQLTQYTITEQEINQSLAKHNNFSK
                     DIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLDMNSLFGSQKATMKLKLKALP
                     VFDKEKGAIFLKEMEVVDATVQPEKMQTVMQTLLPYLNQALRNYFNQQPAYVLREDGS
                     QGEAMAKKLAKGIEVKPGEIVIPFTD"
     gene            22217..23263
                     /gene="pyrC"
                     /locus_tag="JN125_001411"
     CDS             22217..23263
                     /gene="pyrC"
                     /locus_tag="JN125_001411"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HAY8871240.1"
                     /translation="MTAPSQVLKIRRPDDWHLHLRDGDMLKTVVPYTSEIYGRAIVMP
                     NLAPPVTTVEAAVAYRQRILDAVPAGHNFTPLMTCYLTDSLDPNELERGFNEGVFTAA
                     KLYPANATTNSSHGVTSIDAIMPVLERMEKIGMPLLVHGEVTHADIDIFDREAHFIES
                     VMEPLRQRLTALKVVFEHITTKDAADYVHDGNERLAATITPQHLMFNRNHMLVGGVRP
                     HLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCAGCFNAPTAL
                     GSYATVFEEMNALQHFEAFCSVNGPQFYGLPVNDTFIELVREEQQVAESIALTDDTLV
                     PFLAGETVRWSVKQ"
     gene            23337..23582
                     /gene="dinI"
                     /locus_tag="JN125_001412"
     CDS             23337..23582
                     /gene="dinI"
                     /locus_tag="JN125_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA damage-inducible protein I"
                     /protein_id="HAY8871241.1"
                     /translation="MRIEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRY
                     AAANNLSVIGVTKEDKQRISEILQETWESADDWFVSE"
     gene            23872..24126
                     /gene="bssS"
                     /locus_tag="JN125_001413"
     CDS             23872..24126
                     /gene="bssS"
                     /locus_tag="JN125_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309465.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm formation regulator BssS"
                     /protein_id="HAY8871242.1"
                     /translation="MEKNNEVIQTHPLVGWDISTVDSYDALMLRLHYQTPNKSEQEGT
                     EVGQTLWLTTDVARQFISILEAGIAKIESGDFPVNEYRRH"
     gene            24241..25359
                     /gene="solA"
                     /locus_tag="JN125_001414"
     CDS             24241..25359
                     /gene="solA"
                     /locus_tag="JN125_001414"
                     /EC_number="1.5.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-methyl-L-tryptophan oxidase"
                     /protein_id="HAY8871243.1"
                     /translation="MKYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHH
                     GDTRLIRHAYGEGEKYVPLVLRAQTLWDELSRHNEDDPIFVRSGVINLGPADSAFLAN
                     VAHSAEQWQLNVEKLDAQGIMARWPEIRVPDNYIGLFETDSGFLRSELAIKTWIQLAK
                     EAGCAQLFNCPVTAIRHDDDGVTIETVDGEYQAKKAIVCAGTWVKDLLPELPVQPVRK
                     VFAWYQADGRYSVKNKFPAFTGELPNGDQYYGFPAENDALKIGKHNGGQVIHSADERV
                     PFAEVVSDGSEAFPFLRNVLPGIGCCLYGAACTYDNSPDEDFIIDTLPGHDNTLLITG
                     LSGHGFKFASVLGEIAADFAQDKKSDFDLTPFRLSRFQ"
     gene            25407..25520
                     /locus_tag="JN125_001415"
     CDS             25407..25520
                     /locus_tag="JN125_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706980.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2770 domain-containing protein"
                     /protein_id="HAY8871244.1"
                     /translation="MRRLLHYLINNIREHLMLYLFLWGLLAIMDLIYVFYF"
     gene            25780..26346
                     /locus_tag="JN125_001416"
     CDS             25780..26346
                     /locus_tag="JN125_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b"
                     /protein_id="HAY8871245.1"
                     /translation="MSFTNTPERYGVISAAFHWLSAIIVYGMFALGLWMVTLSYYDGW
                     YHKAPELHKSIGILLMMGLVIRVLWRVISPPPGPLPSYSPMTRLAAKAGHLALYLLLF
                     AIGISGYLISTADGKPISVFGWFDVPATLADAGAQADFAGALHFWLAWSVVVLSVMHG
                     FMALKHHFIDKDDTLKRMLGKSSSDYGV"
     gene            26350..26925
                     /locus_tag="JN125_001417"
     CDS             26350..26925
                     /locus_tag="JN125_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HAY8871246.1"
                     /translation="MKKSLLGLTFASLMFSAGSAVAADYKIDKEGQHAFVNFRIQHLG
                     YSWLYGTFKDFDGTFTFDEKNPAADKVNVTINTTSVDTNHAERDKHLRSADFLNTAKY
                     PQATFTSTSVKKDGDELDITGDLTLNGVTKPVTLEAKLIGQGDDPWGGKRAGFEAEGK
                     IKLKDFNIKTDLGPASQEVDLIISVEGVQQK"
     gene            complement(26967..>27554)
                     /locus_tag="JN125_001418"
     CDS             complement(26967..>27554)
                     /locus_tag="JN125_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-related sulfurtransferase"
                     /protein_id="HAY8871247.1"
                     /translation="RNHYEYEVGHFENALEIPADTFREQLPKAVEMMQAHKDKKIVMY
                     CTGGIRCEKASAWMKHNGFNKVWHIEGGIIEYARKAREQGLPVRFIGKNFVFDERMGE
                     RISDEIIAHCHQCGAPCDSHTNCKNDGCHLLFIQCPVCAEKYKGCCSEICCEESALPP
                     EEQRRRRAGRENGNKIFNKSRGRLNTTLGIPDPTE"
BASE COUNT         6599 a         7334 c         6953 g         6668 t
ORIGIN      
        1 aactgtgagt aagcgggtga taaatggtaa aagtcatctt gctataacaa ggcttgcagt
       61 ggaataatga agccgtttcc gtgtccatcc ttgttaaaac aagaaatttt acggaataac
      121 ccattttgcc cgaccgatca tccacgcagc aatggcgtaa gacgtattga tctttcaggc
      181 agttagcggg ctgcgggttg cagtccttac cggtagatgg aaatatttct ggagagtaat
      241 acccagtctg tttctttgat aattgcgctg tttttccgca tgaaaaacgg gcaaccgaca
      301 ctctgcgcct ctttgagctg acgataaccg tgaggttggc gacgcgacta gacacgaggc
      361 catcggttca cacccggaaa ggcgttactt tgcccgcagc ttagtcgtca atgtaagaat
      421 aatgagtaag ttacgatgaa aagaatgtta atcaacgcaa ctcagcagga agagttgcgc
      481 gttgcccttg tagatgggca gcgtctgtat gacctggata tcgaaagtcc agggcacgag
      541 cagaaaaagg caaacatcta caaaggtaaa atcacccgca ttgaaccgag tctggaagct
      601 gcttttgttg attacggcgc tgaacgtcac ggtttcctcc cactaaaaga aattgcccgc
      661 gaatatttcc ctgctaacta cagtgctcat ggtcgtccca acattaaaga tgtgttgcgt
      721 gaaggtcagg aagtcattgt tcagatcgat aaagaagagc gcggcaacaa aggcgcggca
      781 ttaaccacct ttatcagtct ggcgggtagc tatctggttc tgatgccgaa caacccgcgc
      841 gcgggtggca tttctcgccg tatcgaaggc gacgaccgta ccgaattaaa agaagcactg
      901 gcaaaccttg aactgccgga aggcatgggg cttatcgtgc gcaccgctgg cgtcggcaaa
      961 tctgctgagg cgctgcaatg ggatttaagc ttccgtctga aacactggga agccatcaaa
     1021 aaagccgctg aaagccgccc ggccccgttc ctgattcatc aggagagcaa cgtaatcgtt
     1081 cgcgctttcc gcgattactt acgccaggac atcggcgaaa tccttatcga taacccgaaa
     1141 gtgctcgaac tggcacgtca gcatatcgct gcattaggtc gcccggattt cagcagcaaa
     1201 atcaaactgt acaccggcga gatcccgctg ttcagccact accagatcga gtcgcagatc
     1261 gagtccgcct tccagcgtga agtccgtctg ccgtccggtg gttcgattgt tatcgacagt
     1321 accgaagcgt taactgccat cgacatcaac tccgcacgcg cgacccgcgg cggcgatatc
     1381 gaagaaaccg catttaacac caacctcgaa gctgccgatg agattgctcg tcagctgcgc
     1441 ctgcgtgacc tcggcggcct gattgttatc gacttcatcg acatgacgcc tgtacgccac
     1501 cagcgtgcgg tagaaaaccg tctgcgtgaa gcggtgcgtc aggaccgtgc gcgtattcaa
     1561 atcagccata tttctcgctt tggcctgctg gaaatgtccc gtcagcgcct gagcccatca
     1621 ctgggtgaat ccagtcatca cgtttgtccg cgttgttctg gtactggcac cgtgcgtgac
     1681 aacgaatcgc tgtcgctctc tattctgcgt ctgatcgaag aagaagcgct gaaagagaac
     1741 acccaggaag ttcacgccat tgttcctgta ccaatcgctt cttacctgct gaatgaaaaa
     1801 cgttctgcgg taaatgccat tgaaactcgt caggacggtg tgcgctgcgt gattgtgcca
     1861 aacgatcaga tggaaacccc gcactaccac gtgctgcgcg tgcgtaaagg ggaagaaacc
     1921 ccaaccttaa gctacatgct gccgaagctg catgaagaag cgatggcgct gccgtctgaa
     1981 gaagagttcg ctgaacgtaa gcgtccggaa caacctgcgc tggcaacctt tgccatgccg
     2041 gatgtgccgc cagcgccaac gccagctgaa cctgccgcgc ctgttgtagc tccagcaccg
     2101 aaagctgcac cggcaacacc agcagctcct gcacaacctg ggctgttgag ccgcttcttc
     2161 ggcgcactga aagcgctgtt cagcggtagt gaagaaacca aaccgaccga gcaaccagca
     2221 ccgaaagcag aagcgaaacc ggaacgtcaa caggatcgtc gcaagcctcg tcagaacaac
     2281 cgccgtgacc gtaatgagcg ccgcgacacc cgtagtgaac gtactgaagg cagcgataat
     2341 cgcgaagaaa accgtcgtaa tcgtcgccag gcacagcagc agactgccga gacgcgtgag
     2401 agccgtcagc aagctgaggt aacggaaaaa gcacgtacca ccgacgagca gcaagcgccg
     2461 cgtcgtgaac gtagccgccg ccgtaacgat gataaacgtc aggcgcaaca agaagcgaag
     2521 gcgctgaatg ttgaagagca atctgttcag gaaaccgaac aggaagaacg tgtacgtccg
     2581 gttcagccgc gtcgtaaaca gcgtcagctc aatcagaaag tgcgttacga gcaaagcgta
     2641 gccgaagaag cggtagtcgc accggtggtt gaagaaactg ccgctgccga accaattgtt
     2701 caggaagctc cagctccacg cacagaactg gtgaaagtcc cgctgccagt cgtagcgcaa
     2761 actgcaccag aacagcaaga agagaacaat gctgataacc gtgacaacgg tggcatgccg
     2821 cgtcgttctc gccgctcgcc tcgtcacctg cgcgtgagtg gtcagcgtcg tcgtcgctat
     2881 cgtgacgagc gttatccaac ccagtcgcca atgccgttga ccgtagcgtg cgcgtctccg
     2941 gaactggcct ctggcaaagt ctggatccgc tatccaattg tacgtccgca agatgtacaa
     3001 gttgaagagc agcgcgaaca ggaagaagta caagtgcagc cgatggtgac tgaggtccct
     3061 gtcgccgccg ctgtcgaacc ggttgttagc gcgccagttg ttgaagaaat ggctgaagtc
     3121 gtagaagccc ccgtaccggt tgccgaaccg caaccggaag tggttgaaac gacgcatcct
     3181 gaagtgattg ccgccgcggt aactgaacag ccgcaggtga ttaccgagtc tgatgttgcc
     3241 gtagcccagg aagttgcaga acacgcagaa ccggtggttg aaccgcagga agagacggca
     3301 gatattgaag aagttgccga aactgctgag gttgtggttg cagaacctga agttgttgct
     3361 caacctgccg cgccagtcgt cgctgaagtc gcagcagaag ttgaaacggt agccgcggtt
     3421 gaaccagaga tcaccgttga gcataaccac gctaccgcgc caatgacgcg cgctccggca
     3481 ccggaatatg ttccggaggc accgcatcac agtgactggc agcgccctac ttttgccttc
     3541 gaaggtaaag gtgccgcagg tggtcatacg gcaacgcatc atgcctctgc cgctcctgcg
     3601 cgtccgcaac ctgttgagta ataattagct caaagtaatc aagccctggt aactgccagg
     3661 gcttttttat ttcatgtttg aatcaacata ttaaaattca tcaaatggca tccttgctaa
     3721 ccaacaatgc aaaataggca aaaaaaatgc ccgccccggc gatccctgag cgggcagaca
     3781 aaacataccc agtttcatga tatgttttaa agcgagctta tttgttgagc tggaagagcg
     3841 acaatccctg catatcggta aatgctttat acgatgcctg caatgccgtt tgctgcatga
     3901 tgtaagatga aatagttgca ttccagtcca catcaaccag atcgctcatc tgctgcgttt
     3961 gccctaaagc gcgatcgcta cctaaggaat ccagcgactc cagttcgttc agctgcgtgc
     4021 ctaattccgc gcgaacggta aggacattat tcagcgagtt tttcagtcca cggttggttt
     4081 tatccaatgc cgcagcggcg atttctttat ccgcttcgct atccgcgacc ggcgttttca
     4141 gggctgcgat ggcgctatcc agcatggcaa aaagattggt ttcagaagcg ctaccgtctg
     4201 gctccgcaac tgcgttgctg gtaatactgt cgaaaatttt gtcacccgtg tgccctatca
     4261 ccatcgaacg cgaagcatcg acctgttgct taatactttc tgctccaccg acgtatttcc
     4321 ctttctcttc gctaaacggc gcagtctctg ttttataacc ggcaaaaatg tagcgcccgt
     4381 taccgtcagt ggtgttcgcc agattcagca actggtcacg aatcccctga atatccgtag
     4441 ccagcgaggc ccggtcatcg tcactcaagg tgccattgct ggcgtagaca attttttcct
     4501 gagcattctg gatagcagtg gtgacctggc taagtacact ctcttccagt gacacttttt
     4561 gagtggcgaa agtacgcgcc agcgtgtact ggctgttttg cgcctgtgcc tgggagagaa
     4621 ctacggcttg tgatgctgca atgggatcgt cagaagggtt aacgactcgc ttacctgtcg
     4681 acatctgctc gccgtacttc atccattccg cctgagaatt ggtgatgcca cgcatgtttt
     4741 gctggtacat catctgggta ctgaaacgca tcttatctcc ccttagcgaa tgttaatcag
     4801 cgcatcaaaa atcgcgtttg ccgtctgcag aacctgcgca ttcgccaggt aatactgctg
     4861 aaaacgttgc agatttccgt actcttcgtc gagattgacg ccagagatag actgctgctg
     4921 attggaaagc tgcgtcacca cattaccttg cgtggcgcta ctggttttca acgtcgcggt
     4981 tttattaccg atatcactca ctaacgaggc ataagcgtcg ttaaaggatt tcgcaccgcc
     5041 caccgtttta ctgttgcttt gcagatccag cagggcctga ccgttgcggt tatcgctatc
     5101 acccgcatct ttttcgctcg ccatcgctat tttcgcttcg tcggtgatta atacatccat
     5161 gttgacgatg gcgtcactta ctggtttcag cgtgaagctg tcgttaacgg caggcgttcc
     5221 tgtaaacgtc aactccagac catcaaatgc cactttaccg ttggcatccg gcgtcaccgt
     5281 aaaagtggta ttgctggcaa ggcgggtgac ctgccactga ttattatcga acgagatttt
     5341 gtaatctgtc gccagtaccg cggaggcatc agttaccgtg gcaccgatcg caacgtcacc
     5401 tttgtttttc gtgttttgca aaaccgcggg cttaccgata gcaaagaaat cttcaccagc
     5461 atcgccgttg gcatcaaatc cggctttgtg ttgggtgttg aaagcctcgg caaatgccag
     5521 cgccagttgt ccaagcgtat tacgcgtctg gtccagatcc tgagaacgga atgtcagaat
     5581 gccgcccagc gacccggtat tcagtaattt ctccgggatc tcaatattgc ctgccgtccc
     5641 atcaacgtaa gcgacagtca tacgagaagg gtcggcgctg gaaggaactg ccgccagttg
     5701 ccgcgccgta cttccctgaa ccagtgagta accattggcc atcgtgatgt tataagtgcc
     5761 gccatcctga acgctgactt ctacaccaac aatctggttt aattcgctca ccagttgatc
     5821 gcgttgatcc agcagattgt taggtgacgc ccctgccccc acgcctgtca ggcgggagat
     5881 ttggtcgttc aggctggcga tttgtttagc gtaattgttg atctgatcaa cgctggcacc
     5941 tatcgcgata ttgacctgtt tgtcctggtc gcgaagatac tgatcggtgg ttttaaactg
     6001 attcaccaac ccttctgatt tcccaatcag cgcctggcgc gctgccgggt cttccgcgtt
     6061 actcaccagc gtttgcaggc tggtgaagaa atcctgcatc tgtgttgcca gcgaagaggt
     6121 actggtggag agcatattgt cgattttcga catctgctca tagcgggcag tcaggccgct
     6181 actttgcgtc tgcgccgcac gtaactggtt ggtgataaac gcatcatact cacgctgcac
     6241 accagaaacg tagacaccat tgccaaccca gccgccagcg cccaacgtgc tattggcctg
     6301 cgccataata gtggtttggc gggtatatcc ggcaacgtta tagctggaga tattattact
     6361 tgccgtattt aacgccgcct gggccgcgtt cagtccgctc atggcgttat taatcaagct
     6421 ggacatggag gttccttata agccttcaat tacagagtat tatcggcagc gacccgccgg
     6481 acttgagtta ttcagaacag attatcaatg ttcatactgt aggttttgct caccttgtcg
     6541 cttatcgatt tcatctgctg aatcatgttg gtgagtttgc gggcatagtg aggatcggtg
     6601 gcatagcccg cgtcctgtag ggcctgcgcc ccctgctccg cactcgtggc ggtggtcacg
     6661 gcggcgtagc gcgggttacg cgttaacagc ccaacgtaat ccgactatgc ttccagatac
     6721 gagctgtaga cccgaaactt cgcttttact ttcttcgctt cgccgttttc atattcagtc
     6781 gtggtgattt cagtaactgg ccctttccag ttgccagagg ctttgacacc aaacaggtta
     6841 tagctcggct cgccgttttc gcggcggatt tgccgttgcc cccaaccaga ttccagcgcc
     6901 gcctgagcga ggatcaaatg atgtggcaca ccgctttgct ggcttgccag ttgggcgggc
     6961 agcgagagtt gcgcgaggaa tgctttactg tcacccggca gcgaatcatc gtagttacgt
     7021 ggcacggcct tttgcaccag ctgcgaaagc gcctgatttt gataacgcac cacagtttcg
     7081 agcgggaatt tcatcggtgc tgctggcgtg gactcctctg gcaatggttg ttctggcgtc
     7141 atctgtttaa ccatcatctc tgcaagcccc agacctttgc ccgccgtcat ctgttgggca
     7201 atctgctggt catacatact ggtatacagg cgagtgtgct cgctgctgaa caggccatct
     7261 tttggtaaag cgtcgcgcat gcttttcaac atcatctgca cgaacatccc ttccacctga
     7321 cgggccaccg gacgggccac cggacggata tttgccgccg gatcttcgcc cgctttcgcc
     7381 tttagttcgt tgagtgattg cgcatcccag gccgcacttg ccagtagttt gctgtcgctg
     7441 atcatcagat gatttccagt tttgcccgca gacatcccgc actttgcatt gattgcagta
     7501 tggacatcag atccatcggc gtagcgccca gcgcattgag cgcgcgcacc acgttattga
     7561 gcctggcgct ggaacgtacg ctttgcagcg aaccgccgct ctggcgtaaa tcgatctgcg
     7621 tttgtggagt aaccacagtc tgtccaccac caaacggtgt atctggctgg ctgacattgg
     7681 cctgacgatt aactgttact gagagattcc cctgcgctac cgcgcagctg tcgagggtca
     7741 cttcgcgatt catcaccacc gaaccggtgc gcgagttaat cactacttta gcgtcctgcg
     7801 gggtgacatt aacctgcata ttctggatat cggcaaggaa gcggacctgg gaactgttgc
     7861 cactcggtac gcgcacctga atagtccgcg catctaacgc ggtggcgctg ccatatccac
     7921 gcacgcggtt gatggtgtca gcgatttgct gcgccatgct gaaatcttcg tcgttaagtt
     7981 gcaaattaag ggtattcccg acgccaaact ggctgggcaa ttcacgttca ataaccgcac
     8041 cattggtgat ccgtccaccg ttcagttggt taacctgaac actgctaccg ccagcggagg
     8101 ctcctgcgcc gccaaccaga atattgccct gcgccagcgc atacacctga ctgtcaacgc
     8161 ccttaagcgg tgtcatcaac aacgtacctc cacgcaagct tttggcatta cccatggaag
     8221 aaaccaccac atcgatggtt tgcccctgac gtccaaacgg aggaagtgac gctgtcacca
     8281 ttaccgcagc gacgtttttt agctgcatat tggtgcccgt cggaacggta attcccagct
     8341 gtgagagcat gttattaagc gtttgtgtgg taaacggcgt ctgggttgtc tggtcaccgg
     8401 tgccatccag cccaccacca gaccatagcc tatcagtgag ttttgcctta ccccctgaac
     8461 actggtgaga tcgcgaatac gctcagcctg agccgccgtc gtgaccagta gaagaattaa
     8521 tgcagagaga aatttaatca ccacagcctc acttacattg gcgacaggtt aaggaagaaa
     8581 cgctgcaacc agcccatatt ttgcgcttcg ttaatgtagc cattgcctac gtattcaatg
     8641 cgcgcatcca ccacctgagt agacgatacg gtattgctgc cgctgatagt gcgtggatta
     8701 accacgccag agaagcgaat aaattcggta ccctgattaa tggcaatctg tttttcaccc
     8761 accacatgca ggttgccgtt gaccagtacc tggtcaaccg tcaccgtcaa cgtgccgcta
     8821 aaggtattgc tggcattggc cccgcccttt ccgttgaacg tgttaccacc ggaggcttcg
     8881 acatcggcac gagcgttacc aaacagcccc tgcaaatagc gcggcacagt atcaaagcca
     8941 aaattagttt taccgtcacg gctggcattc acagaggagc ttttgctggc gctgacgttc
     9001 tcctgcaaca cgatggtcag cgtatcgcca atattgcgtg gtcgacgatc ttcaaacagc
     9061 ggttgatagc catagttaat cggctgagca gactggaaaa tagaaccgtt ggcgacgggc
     9121 gtcggaccgg gaaccggttg tgcactggtc gccccctgca ccagcggcgt ggagggtatc
     9181 caggcgcagc cggttagtga aagcaccaac aagctggaaa tggcataagt atgcgcagcg
     9241 tttttttgca tggctatcat cttcaaaaat cagtaaaccg gtgaacctgc caccggttaa
     9301 gccttagagt tgcgtcagtt tttgcagcat ctgatcggtg gtggacaccg ctttactgtt
     9361 gatttcgtaa gcgcgttgca cctgaatcat attgaccagt tcttccgcca cgttgacgtt
     9421 agacgtttca acataccctt gatacagcaa tcccgcgccg ttcaggcccg gcgtgctttc
     9481 gttcggtgca ccagaggatt gcgtttcggt gtagaggttt tcgccaatgc tctacagccc
     9541 ggtgtcattc ataaaggtgg tgagattgag ctgcccaacc tgaaccggag ctgcctggcc
     9601 ttgttgggtt acgctgacca cgccatcacg accgatggtg atacttaacg cattcgccgg
     9661 aatggtgatc gctggctgca cctgaaaacc accagccgtc accagctgcc cgttctgatc
     9721 cacctggaaa gagccgtcac gggtataggc tgatgaacca tctggcaaca tcacctggaa
     9781 aaagccctgc cctttaatcg cgacatcttt gctgttgttg gtctgcgaca ggtttccctg
     9841 gctgtgtaag cgttcagtgg cgaccgggcg tacccccgtg ccgatttgta atccggaggg
     9901 taaggtggtt tgttcggaag actgtgcccc cggctggcga atggtttgat aaagcagatc
     9961 ttcaaacacc gcgcgctgac gcttaaaacc gttagtactg acgtttgcca ggttgttggc
    10021 aatgacgtcc atattggttt gctgggcgtc aaggcccgtt ttggcgatcc ataatgaact
    10081 gatcataaaa tgtcctgtag tggattagtg acaagcagag cagaagcacg cgacagtgtg
    10141 aatttcccct caccctaacc ctctccccaa aggggcgagg gaatagtccg cgcgctttta
    10201 ttgcaatgtc atcaatcgtt caattaactc atcgacagca gttggttggc acggcctgcg
    10261 ttatcatcga cgctgctgat caccttcatc tgcatttcaa aacgccgcgc gctggcaatc
    10321 atgtcgctca ttgccgcaac ggcattgacg ttactgcctt ccagaacccc cgacatcaca
    10381 cgcaaggttg gatctgcctg cagtaccggc cctcgcgtgg cctgggtttc tgcgcttaaa
    10441 cgaaaaatgc cgtcgtcacc gcgctgcact tcgctgcccg tggctttcac cagtttcaga
    10501 cgccctactg gcgcaactgt atttgccgga tcgcccggat tgagcgccga gattgtgcca
    10561 tcggcagcaa tagtgatttc cgctccttcc ggcacagcaa ttggccccgc ctcgcctatc
    10621 acctgatgcc cctgaattgt cagttgcccg gtgggatcaa cctgaatgct gccattacgc
    10681 gtataccctt cgctgccgtc agcggtctgc acggccagcc agccatcctg ctgcaacgca
    10741 acgtccagcg ggcgcgaggt gtaatctatc ttgccgggcg tcatgtctgc acccggtgtt
    10801 gacgccgtta ccagcgtgcg cgtgggcagt gaaagccctt ccaccggcac tgcgcgcaag
    10861 gcgtttaact gcgcgcgaaa accgggcgta gaggcattgg ccagattact ggcggttacc
    10921 gcctgttgat tcagcgtctg gctggctgct cccatcgcag tataaattgc gtgatccatt
    10981 gagctatccc gtcagcgatt agcgtaagtt aaccagcgtg ttgaggatct ggtcctgggt
    11041 tttgatggtc tgggcgttag actgatagtt acgctgggca acgatcatat tgaccagttc
    11101 tttactgaga tcgacgttgg acgcttccag cgcaccgttg gtcagggtgc caaagtttcc
    11161 cgtcccggct gtccccaaca gcgccacgcc agaagattgc gtcgcagacc agacgttgtc
    11221 gccttcggat gccagacctt cgttgttggc aaagttcgcc agtacaatct gccccagcag
    11281 ttgagtttgt tcgttggaat agttgccgac aaccgtaccg tcatcattga tttgataact
    11341 caccagatca cccggtttgt agccgttctg gggggttgcc acaatattgt tagcgccggt
    11401 attttgctgc atggagttga ggaagctcag actaaacgtg gcggggtctg caccgttaat
    11461 tgcgccggtt gcgatattat tcgccatcgc accatccact aatgtgccat tagcattaaa
    11521 ttccagtgtt gtcgctgtct tcgcaatgct gtttggatca ctgctatcct gggtgtagac
    11581 ctgccagtta ttatccccgg tcttcacaaa gtagacgctc atgtcatgag cattaccctg
    11641 actgtcgaaa acagtcaccg aacctttttt gttatagcta tccgcattgc tggcgctgaa
    11701 tggcgtaaca gtaggaagcg gatcactgga attcaggttg atctgcatcg acgccgtggt
    11761 ggtagttttc gctgccatca gggtattcgg gatcgaaata ttggtcggat tcgccccttg
    11821 ctgaatagtc ggcggcgtac cggttgccgg gtaacccgtc agctgtaaac cttgcatatt
    11881 caccaggtta cggttttcat ccagcttaaa ttgtccgtta cggctgtaga acaccgaacc
    11941 gttgctgtct accagacgga aaaaaccgtt ctggctgata gcaacgtcca gacctcgccc
    12001 ggtgttggtg gtcgtgccat ctgtaaagtc ctgagtgata ccggcaactt ttacccccag
    12061 tcccactttc gaaccggcaa acatatcggc aaaagaggcc gtgcctgatt taaagccgta
    12121 ggtggcggag ttgacgatat tgttgccaat aacatcgagg ttagtggcgg cagcgtttaa
    12181 tccgctaacc gcttgagaaa aggccatgac tgactcctga aatgtgaagg cttaaattat
    12241 ctgccgtact tcgtcgaggg tggtggtgcc gtaagtgccg agatccagcg tattaccgct
    12301 gttgccgcgg atcacaccct gcaccagagc aaactgcagc ggctgggcaa ccagttgtgt
    12361 accaccgtta ctggcggtaa tcgctacatt gtaagaaccg ttcggcgcag tgctgccatc
    12421 agtcaacgta ccgtcccagg tgaaactgtg aactccggcg gtcagttcac caatatcaat
    12481 ggtgcgcaca accgcgccat ttttatcggt gatggtggcc gtaactttgt ctgccgcctg
    12541 ttgcagctca acaccaaacg gcgtggtcgt ggtcacagcc ccttcttcac tgccggttcc
    12601 cgcaagaaca gttgtgccgg ggatcatcac gccgtgaccg atcaggttac tggcctgtaa
    12661 cgactggctg ttatcaatct gtccggaaat agatccgagc gtggtattga gtttttcaat
    12721 cccgctgacc gtgctgattt gtgccaattg cgacgtcagc tcgttgtttt ccattggatt
    12781 ggtcgggtcc tggtttttca gctgcgccac cagcaaagtc agaaaactgc tttgtaaatc
    12841 tgcggcgttg ctgcccgtga gcgaactact gctggtggta ctgacgccgg tatttgtcgg
    12901 atcggtggtg gttaccgcaa tggacatagc tttctccttt attgaccgag cgtaagggtt
    12961 ttcagcatca tgcttttcac cgtgttgagc acttcaacat tggcctgata gctgcgtgac
    13021 gccgacatgg tgttaaccat ctctccgaca acatcaacgt tcggcatttt tacgtagccc
    13081 tttgcatccg ccagcggatt acccggttca taaaccagtt tgtccggggc ctgactttct
    13141 ataacatcgg caacctttac gccgcctgtc gcagcacctg gtgcagcgtt aacctggaat
    13201 accacctgtt ttgcccgata tggctgtcca tcgggaccgg tcacgctatc agcattcgcc
    13261 agattactgg ccgccacgtt caggcgctgg gactgggcag ttaacgccga cccggcgata
    13321 tcaaaaatat tcagcagtgc catccgttaa tttccgctct gtaaaacgtt catcatgcct
    13381 ttgatttgcc cgctcaacgc actaaggctc atctggtatt gcaggctgtt atcggcaaac
    13441 tgggtgcgtt cgcgatccat atcgacggta ttaccgtcaa gcgaaggctg gtccggaatg
    13501 cggtattgca gttctgcggt aggaggcgtc agcgcctgcg ccggaatgtg ttgcgttgag
    13561 gtcatcgtca gagcaaccac actggttgca tcccgtccac gttgcatgac ttttttaagt
    13621 tcactggcaa aatcgatatc gcgcgcctga taaccagggg tatcggcatt ggcgatgttt
    13681 gctgccagca cttcctgacg ctgggcgcgc agattgagcg cctcttgttg aaaacgtaag
    13741 gcggcgtcga gcttatcgag catatctcct ccgcaggtat caaaattctg ccatcagctt
    13801 aaatgccttt acgcgcgcgt tatcggcgga ataaacgcaa aatgggtcgc tatttatgcc
    13861 gttgatgacc attggggacg ggtacaattc acgttgtaga aatagctggg gggcgaaaat
    13921 gctggcaata aaacgtagcg tggcgatcat cgcgatactg ttcagtccgt taagtgcggc
    13981 gagcaatctc acatcgcaat tgcacacctt ttttagcgcc cagctcgtgg gggtaagtga
    14041 tgaggttcgt gtttctattc gtacagcccc caatctacta ccgccgtgcg agcagccatt
    14101 gctttcgatg agcaataatt cccgcctgtg gggcaatgtg aatgtgttgg cacgctgcgg
    14161 taacgacaaa cgatatttac aggttaatgt gcaggccaca ggaaattatg tggttgccgc
    14221 gatgcccatt gtgcggggag gaaagctgga agctggcaat gtcaaactaa aacgcggacg
    14281 actggatacc ctgccaccgc gtacggtgct ggatatcaat caacttgttg atgccattag
    14341 cctacgcgat ctatcacccg atcaaccaat ccaattaacc cattttcgcc aggcatggcg
    14401 ggtaaaagcg ggacaacgcg tcaacgtgat cgccagcggt gacgggttta gcgccaacgc
    14461 agaaggtcag gcgctgaaca atgcagccgt cgcacagaat gcgcgggtgc gcatggtatc
    14521 gggactggtg gtcagcggcg ttgttgatgc agatgggaat attcttataa acctgtaagc
    14581 tgttaaagat tacccgtccc ttgccgataa ataagcaaca catgataaaa gcgccctcaa
    14641 tgaggaataa accatgagta ttgatcgcac ttcgcctctg aatcccgtaa gcaccgttca
    14701 accgcgcgaa accactgacg cgccggtaac gaacacccgg gcggcaaaaa caaccgactc
    14761 caccagcacc agcaccagca ccagcaccag caccagcacc agcaccagca ccagtgtgac
    14821 gttaagcgac gcgcaagcaa aactgatgca acccggcagc agtgatatca atcttgaacg
    14881 tgtcgaagcg ttaaaactgg cgattcgtaa cggtgaacta aaaatggaca tcggcaaaat
    14941 tgccgatgcg ctgatcaacg aagctcagca agacttgcag agtaactgat cgtatgacac
    15001 gtcttgcaga gatccttgac cagatgtccg ctgtgcttaa cgatctcaaa acggtaatgg
    15061 atcaagagca gcaacatctc tctatggggc agatcaacgg cagccagttg caatggatta
    15121 cagaacaaaa aagctcactg ctggcgacgc tggattacct cgaacagtta cgcaagaaag
    15181 aacccaatac agcaaatagc gttgatatta gtcaacgctg gcaggaaatt actgtgaaaa
    15241 cgcagcaact acgccaaatg aatcaacata acggttggtt actggaagga cagattgagc
    15301 gcaatcaaca ggcgctggaa atgttgaaac cgcatcagga accgacgcta tatggggcga
    15361 acggtcagac ctcaacaacc catcgcggcg gtaaaaagat ttcgatctga agattatctc
    15421 cggcctgcac tgcaggccgg aatgcattgt tacaccgtcc ggcgggcaaa ttctttaact
    15481 ttgaagccca gtaccgccag tgcagcgaag tacgcggcaa tccccgccag cacgaccgcc
    15541 attaaacgca gtaagcgcca gggcatggta cccaatgacc actccggcat gatatgtaac
    15601 atacctaaaa gcacgccaga catcaccagt accgccacca ccagacgcaa cagaaacgcc
    15661 atccagccgg gttgcggagt aaagattttc tgcttacgca actgccagta aagcagcgaa
    15721 gcattcagac acgccgccag accaatagaa agtgacagcc cggcatgttt caacggacca
    15781 ataaacgcca ggttcatcaa ttgcgttaaa atcagcgtaa cgatggcaat tttcactggc
    15841 gttttaatgt cctggcggga ataaaagcca ggagccaaca ctttcactac aatcaggcca
    15901 atcaaaccca ccgagtaggc aattaacgcc cgctgggtca tcagcgcatc aaacgcggta
    15961 aatttaccgt actggaacag cgaaacggtt aacggacctg aaagaatgcc caacgcaacc
    16021 gcactcggca gcgccaacag gaaacaaaga cgcaaccccc agtccatcaa acggttgtat
    16081 tcatcatgat tgccactggc aaaacttttc gacagcgacg gcagcaaaat ggtgccaagc
    16141 gccacgccca gcacaccgga cggaaactcc attaagcggt cggcgtaata catccaagac
    16201 accgaaccgg aagcaagaaa cgaggcaaaa atggtgttga tgattaagga gatctggctc
    16261 acagagacgc caaggatcgc cggtcccatc tgtttcacca cgcgcattgc tccggcatcg
    16321 tggaagttaa tgcgcggcag gaccagcatg ccgatcttct tcaggtgcgg tagctgatac
    16381 accagctgca ggatgccgcc gaccgtaaca gcccacgcca gcgccagcac cggtgggtta
    16441 aagtacggtg cggcaaacag cgcgaaacca atcatgctga tgttaagcag tgttggcgca
    16501 aacgccggaa tcgagaagcg gttccacgta ttcagaatcg ctcccaccag cgacgccagg
    16561 gagatcagca agatataggg aaaggtaatc tttagtagct ggctggtcag ggcaaatttg
    16621 tcagctgtgt cagcgaagcc tggcgcggtc accatgatca cccacggtgc ggcgagcatg
    16681 ccagcgaccg tcacaaccgc cagcgcaagt gtcagcaggc cagaaacata agagacaaag
    16741 acccgcgtgg cgtcttcacc ctgcttactt ttatattccg ccagaatcgg tacaaatgcc
    16801 tgggaaaatg ccccttcggc aaagatacgg cgtaacaagt taggaagttt aaaagcgacg
    16861 aaaaaggcgt cggttgccat ccctgcgcca aagattctgg cgacaattgc gtctcgtgcg
    16921 aagccaagca cacgcgaaaa catggtcatc gagctgacgg cggccagcga ttttaataaa
    16981 ttcatcggtg ttctaatcca gaccaacggg caaaacgcct gcaagacagg cgctgaaaga
    17041 ggcgaatagt ctacctggat tatggtgaat tgctaccgcc agatgttaca gggtttattc
    17101 actcatcgca tcgcgccaga tcttgtcaac gatacgttgc gccagcacgg cctattcgcc
    17161 ggcggtttgc ggaactgtct gattttgcac tcattcaatg aagtgccgcg cacagccgac
    17221 aaatccacgt tgttcaagag tgctctgcca accaggaatc ggtttatgca ctacgccctg
    17281 cccgcgctcc tcacgccatt cgcgcatatc cgtaatgtcg atgagcgcac cgtcagtcac
    17341 ggcctgcacg gtttcacgct gacttccggc acggcgatgc atacaggtgg tgatctgcaa
    17401 aggaccggcc gaaaaatggt gctcggcaaa cagcatttcg ccagcgtcgt tagtcagtag
    17461 cgtaccgcca tccagagagg ctttgccgcc cgacaaccac agcgcggtat ccaccacatg
    17521 cagataatca tccagcaacg tgaaataaag atcgtgtggc ccgacactat tgctacgatg
    17581 tttatccatt cttagcgaag ctgcggtagc gagttgcgtt tttaactcac cgtagagtgg
    17641 tgcgaaacga cggttaaaac cgaccatcaa cgtctgtttt ttccgcgccg ccagttccac
    17701 cagccgttca gcatcgcgca gattttctgc cagcggttta tcgacacaga catgtacacc
    17761 cgcattgagt aacgtactga ccacgtcaaa gtggctggcg gtgctggaat gcacaaaaac
    17821 cgcatcgcaa ctggcggcaa ggctggataa cgaatcggca taaggaatgc gccagctttc
    17881 acaaattggc agggctttcg cgcgcgtagg cgaccaggct ccttgtaaca tccagtcaga
    17941 cgctgccgcc agcaccggta accacgcttt ttgcgcaatg ccgcctaatc ccacaacgcc
    18001 gatacgtaat tttttcactt taatctccca gatgggccag caacgaatca agacgcggtt
    18061 tcagttctgc cacttcgatt tccagggctt cgacgcgggc ctgtaaatca ccatcaaccg
    18121 cgttcgacat atccgttacc gccggctgat cctctacctc accactgaaa agatgcatgt
    18181 agcggctttc gcgtttaccc ggttcgcggg ccagacgcac cacaaaagga ccatcttcgc
    18241 gatttgccag ttgttccagc gtcgactcca cttccgccat atcgctgaat tcatacattc
    18301 gcgcggcgcg gctgcgcagt tcacccggcg tctgggcacc acgcaataac aacgtggtga
    18361 ttaacgccac ttccgctgcg ctcagtttca gatcgccaaa ttctgaatta caaaaacgtt
    18421 gttcatattt ggtgacccga ttaccaaagc cactcaccgt gcgcagataa tggcgtttga
    18481 ccagattatc cagttgctcc tgcacttcag attcactcag attcatgacc ggttcacggt
    18541 tcgttttctg attacaggcc gtgactacac cattgactga gagcgggtat tgctccggcg
    18601 tggtcacctg cttttccagc aagcaaccaa tcacgcgagc ttcaagggca gtaagttgat
    18661 atttcatgag attctcctta gcggccgggc gtccagtctg gggtagttaa tgccgtcagt
    18721 acgtgatcgc gccattgtcc atcaatcaac agatagtctt tcgcatagcc ttctttttca
    18781 aaacccagtc gcgccagtaa atcaccgctg cgtttattgt gcggcatata attagccata
    18841 atgcgatgaa tatgttgggt gcgctgcata taacgaatgg ctgcggtcag ggcttcaaac
    18901 atgagtcctt tgccctgcca tttttgccca atcgaataac cgagatagca ggcatgaaaa
    18961 gagccacgaa caacattgga aaaattggca acgccaataa tctctttttc gtccgggtcg
    19021 aataagccaa agtagaaagc tgaaccttgt ttatgaaatt cgttaatcat ccccagcctg
    19081 gcctgccagc ctgatggata acagtggctt tcgtcgcgca ctggctccca gggcttgagg
    19141 aaatggcgat tctctgcgta ataatccgca agacgccagg catcacgatc atgcaccaga
    19201 cgcacgacca gtcggtctgt ggttaagcgc acttttggca cgttactgcg atagccaaac
    19261 attctatacc tactccttcc cgtaacgtct ttaatacgct gtaagtatta ctatacctgc
    19321 gcaaccagac cctgtgaaaa gtccaaaatg ccattttctg cattattcac atatttgata
    19381 aaaactctct atcaaagcga cgttttgata aaaaaatatt gtccccgaag tgatgggaaa
    19441 agtcttagcg gcaatgcaga atagaaagtg ctcatctttt atttcccggg aggggaaatg
    19501 tcccgcgtat cgcaggcgag gaacctgggt aaatatttcc tgctcatcga taatatgctg
    19561 gtcgtgctgg ggttctttgt tgtcttcccg ctgatctcta tccgcttcgt tgatcaaatg
    19621 ggctgggccg ccgtcatggt cggtattgct ctcggtctac gccagtttat tcagcaaggt
    19681 ctgggtattt tcggcggcgc aattgccgac cgctttggtg ccaaaccgat gattgttacc
    19741 ggtatgctga tgcgcgccgc cggattcgca acaatgggta tcgcccacga accgtggcta
    19801 ttgtggtttt catgcctgct ctcgggactc ggcggcacgt tgtttgatcc gccgcgttcg
    19861 gcgctggtgg tgaaactaat ccgtccacaa caacgtggtc gttttttctc gctgttgatg
    19921 atgcaggaca gtgccggtgc ggtcattggc gcattgttgg ggagctggct gttgcaatac
    19981 gactttcgcc tggtctgcgc cacaggggcc gttttgtttg tgctgtgtgc ggcgttcaat
    20041 gcgtggttgt taccggcatg gaaactctcc accgtacgca cgcccgttcg cgaaggcatg
    20101 acccgcgtga tgcgtgacaa gcgttttgtc acctatgtcc tgacgctggc gggttactac
    20161 atgctggctg tacaagtgat gctgatgctg ccaattatgg tcaacgacgt ggctggcgcg
    20221 ccctctgccg ttaaatggat gtatgccatt gaagcgtgtc tgtcgttaac gttgctctac
    20281 cctatcgccc gctggagtga aaagcatttt cgtctggaac accggttgat ggctgggctg
    20341 ttgataatgt cattaagcat gatgccggtg ggcatggtca gcggcctgca acaacttttc
    20401 accctgattt gtctgtttta tatcgggtcg atcattgccg agcctgcgcg tgaaacctta
    20461 agtgcttcgc tggcggacgc aagagctcgc ggcagctata tggggtttag ccgtctgggt
    20521 ctggcgattg gcggcgctat tggttatatc ggtggtggct ggctgtttga cctgggcaaa
    20581 tcggcgcacc agccagagct tccgtggatg atgctgggaa ttattggcat cttcactttc
    20641 cttgcgctgg gttggcagtt tagtcagaaa cgcgccgcgc gtcgtttgct ggaacgcgac
    20701 gcctgatttg atactccccc ctgactcctc catactgaaa gtgaactgac agccaaatgg
    20761 aggagtcacg tgaagctata catttacgat cactgccctt actgcctcaa agcccgcatg
    20821 attttcggcc tgaaaaatat ccccgtcgaa ttacatgttc tgctcaacga cgacgcagaa
    20881 acacccaccc ggatggtcgg tcaaaaacag gttcccattc tgcaaaaaga tgacagccgc
    20941 tatatgccag aaagcatgga tatcgttcac tatgtcgata aactcgacgg caaaccgtta
    21001 ctgaccggca aacgttcccc tgccattgaa gagtggctgc gcaaggtcaa tggctacgcc
    21061 aacaaactgc tgttgccgcg ttttgccaaa tcggcatttg atgagttttc tactcccgcc
    21121 gcgcgcaaat atttcgtcga caagaaagag gccagcgcgg gtaattttgc cgacctgctg
    21181 gcccactctg acggtctgat taagaatatc agcgatgatt tgcgtgcgct ggacaaactg
    21241 atcgtcaaac cgaacgccgt gaatggcgaa ctttcggaag atgatattca gctatttccg
    21301 ctactgcgta atctgacgtt ggtagccgga atcaactggc caagccgcgt tgctgattac
    21361 cgcgataata tggcgaaaca gacacaaatc aatttgttat catcaatggc gatttaatcc
    21421 tgacccgccg cggcagcctg tattcgcggg ttgccgccgt tttcagtttt ttctgctggc
    21481 gagtttatcg ctggtgacac atgctgcgtt gtgtcaggat attgacgcag atttcatgtc
    21541 gaggactacc atgaacaagt ttttatttgc cgctgcattg atcgtcagtg gcctgctcgt
    21601 tggctgtaat caactcaccc aatacaccat caccgaacaa gaaattaacc agtcgcttgc
    21661 gaaacataat aatttctcaa aagatatcgg tttacccggc gtggctgacg cccatattgt
    21721 tctgacaaac ttgaccagcc aaattggtcg cgaagagccg aataaggtta ccctaaccgg
    21781 agacgccaat ctggacatga actccctgtt cggtagtcag aaagcgacca tgaaactgaa
    21841 gctgaaagcg ctgcccgtgt ttgataaaga aaaaggtgcg atcttcctga aagagatgga
    21901 agtggtcgat gcgacggtac aaccggaaaa aatgcaaacg gtgatgcaaa cgttgcttcc
    21961 ctatttgaac caggcattac gcaattactt taaccagcaa cctgcttacg tcctgcgcga
    22021 agatggcagt cagggcgaag caatggcgaa aaaactggcg aaaggcattg aagtgaagcc
    22081 aggcgaaatt gtcattccgt ttacggatta atgacgaggg cgcattcgcg ccctttattt
    22141 ttcgtgcaaa ggaaaacgtt tccgcttatc ctttgtgtcc ggcaaaaaca tcccttcagc
    22201 cggagcatag agattaatga ctgcaccatc ccaggtatta aagatccgcc gcccagacga
    22261 ctggcacctt cacctccgcg atggcgacat gttaaaaact gtcgtgccgt ataccagcga
    22321 aatttatgga cgggctattg taatgcccaa tctggctccg cccgtgacca ctgttgaggc
    22381 tgccgtggcg tatcgccagc gtattcttga tgccgtacct gccgggcaca atttcacccc
    22441 attgatgacc tgttatttaa cagattcgct ggatcctaat gagctggagc gcggatttaa
    22501 cgaaggcgtg ttcaccgctg caaaacttta tccagcaaac gcaaccacta actccagcca
    22561 cggcgtgacg tcaattgacg caatcatgcc ggtacttgag cgcatggaaa aaatcggtat
    22621 gccgctactg gtgcatggtg aagtgacaca tgcagatatc gacatttttg atcgtgaagc
    22681 gcactttata gaaagcgtga tggaacctct gcgccagcgc ctgactgcgc tgaaagtcgt
    22741 ttttgagcac atcaccacca aagatgctgc cgactatgtc catgacggaa atgaacggct
    22801 ggctgccacc atcactccgc agcatctgat gtttaaccgc aaccatatgc tggttggtgg
    22861 cgtgcgtccg cacctgtatt gtttacccat cctcaaacgc aatattcacc aacaggcatt
    22921 gcgtgaactg gtcgccagcg gttttaatcg agtattcctc ggtacggatt ctgcgccaca
    22981 tgcacgtcat cgcaaagaga gcagttgtgg ctgcgcgggc tgcttcaacg ccccaaccgc
    23041 gctgggcagt tacgctaccg tctttgaaga gatgaatgct ctgcagcact ttgaagcatt
    23101 ctgttctgta aacggcccgc agttctatgg cttgccggtc aacgatacat tcatcgaact
    23161 ggtacgtgaa gagcaacagg ttgctgaaag catcgcactg actgatgaca ccctggtgcc
    23221 attcctcgcc ggggaaacgg tacgctggtc cgttaaacaa taaaaatcgt agcttcctgt
    23281 tgtcattagg ttattttaac tgtataaata accagtatat tcaacagggg gctattatgc
    23341 gaattgaagt caccatagcg aaaacttctc cattgccagc tggggctatt gacgccctgg
    23401 ctggcgaact ttcccgccgt attcagtatg cgtttcctga taatgaaggc cacgtatcgg
    23461 tacgttatgc cgcagcgaat aatttatcgg ttattggcgt aacaaaagaa gataaacagc
    23521 gcattagcga aattctccag gaaacgtggg aaagcgccga tgactggttt gtcagcgaat
    23581 aatatgcagt gatttttgtt tttgccgggt cgccccggct tttttatttt acttacaaat
    23641 tttgagtaca aaatttctac acttcctcaa aataattgca caatatgcta aaaaaatatg
    23701 aatgacatgc tgttttattg ttcatataaa tcttaaaagc agaaatttat ctgttccccc
    23761 ctttaaaaat tcggtgaata cccttactta ttggtatact gaagttgctt cagataaaaa
    23821 cgcattgaac ctcgaataac gttgtctagt aacacgaatt agggggccat gatggaaaaa
    23881 aataatgaag tcattcagac tcatccgctc gtagggtggg acatcagcac cgttgatagc
    23941 tatgatgcgc tgatgttgcg tttgcactac cagaccccaa ataagtccga gcaggaaggg
    24001 actgaagttg gtcagacgct ctggttaacc actgatgttg ccagacaatt tatttcgata
    24061 ttagaagcag gaatcgccaa aattgaatcc ggtgatttcc cggtaaacga gtatcggcgt
    24121 cattaacatg acatgaccat ccacccaaaa ggcacctcac cggtgccttt accatttctg
    24181 ggttgtatat ctgcattcag ttaattactc tgcttaaacc atgagagcag agagaaaaaa
    24241 atgaaatacg atctcatcat tattggcagc ggttccgtag gcgctgccgc cgggtattat
    24301 gcaacccgcg ccggtttaaa cgtgctaatg accgacgccc atatgccacc gcatcaacac
    24361 ggcagccacc acggcgatac gcgattaatt cgccatgctt atggtgaagg cgaaaagtat
    24421 gtcccgttgg tcctccgcgc gcaaacgctg tgggatgaac tttcccgcca caacgaagat
    24481 gatcccattt ttgtacgctc tggtgtcatt aacctcggcc cggctgactc cgcatttctc
    24541 gccaacgtcg cccacagcgc cgaacagtgg caactcaacg ttgaaaagct cgatgcgcaa
    24601 gggattatgg cccgctggcc agaaatacgc gtcccggaca actacatcgg cttatttgag
    24661 actgattccg gttttttgcg cagcgaactg gcgattaaaa cctggatcca actggcgaag
    24721 gaagcgggct gtgcgcaact gttcaactgc ccggtcaccg caattcgtca tgacgatgat
    24781 ggcgtaacta ttgaaaccgt tgacggtgag tatcaggcga aaaaagcgat tgtctgcgcg
    24841 ggaacatggg taaaagacct gctcccggag ctgcctgtcc agcctgtacg taaagtattt
    24901 gcctggtatc aggccgatgg ccgctatagc gtgaagaata aattcccggc gtttaccggt
    24961 gaactgccca atggcgatca atattatggt tttccggcag aaaacgacgc gttgaagatt
    25021 ggcaaacata acggaggcca ggttatccat tcagcggatg aacgtgttcc gtttgcggaa
    25081 gtggtcagcg atggttcgga agccttcccg ttcttgcgca atgtattgcc gggtatcggt
    25141 tgctgcctgt acggcgctgc ctgcacctat gataattcgc ctgacgaaga ttttattatc
    25201 gataccctac ccggccacga taatacactg ctcattaccg gcctgagtgg gcacggtttt
    25261 aaatttgcgt cagttttagg ggaaatagct gccgattttg cgcaagacaa aaaaagcgat
    25321 tttgatttga cgccattcag gctttcccgc ttccaataat catcattacg gcctccagaa
    25381 tgaggccgtt tttacaggag tatttaatgc gtcggctgtt gcactatctc atcaataata
    25441 ttcgcgagca tctgatgctt tatctttttc tctggggatt gttggcaatt atggatctga
    25501 tctatgtgtt ttatttttag ttttccgcac tgacataaac tgacaaatat ttaatctccc
    25561 tttcttttag cgtgaaaatt gaatgagatt attcctgctt ctacagcact taccagacat
    25621 ctctgatgct gaacccacta aacttatgaa gattctttca ttattaattc aaaattattg
    25681 aaataaaaat aaatatcatt caatttgtta tttttgtgtt gcaattcatt ctccgacacg
    25741 ccattttctt tctctcgcaa attcgtattg gatgcactta tgtcattcac aaatacccct
    25801 gaacgctatg gtgttatatc tgcggccttc cattggctaa gcgcaattat tgtctacggc
    25861 atgtttgctt taggtctgtg gatggtcacg ctcagttatt acgatggctg gtatcacaaa
    25921 gcacccgaac tgcataaaag catcggtatt ttgttaatga tggggctggt tattcgcgtt
    25981 ctgtggcgtg tcatatctcc accgccgggt ccgctgccga gttattcgcc catgactcgt
    26041 cttgccgcaa aggctggaca tctcgcattg tacctattgc tgttcgccat cggcatcagc
    26101 ggctatctga tctcaactgc cgatggtaaa ccgatcagcg tttttggctg gtttgacgtc
    26161 cccgcgaccc ttgccgacgc tggcgcacag gcagactttg ccggtgccct gcatttttgg
    26221 ctcgcgtgga gcgtcgtagt actgtccgtt atgcacggat ttatggccct gaagcatcat
    26281 ttcatcgata aagacgacac tctgaagcgc atgctgggaa agtcgtcatc tgactatgga
    26341 gtataaaaaa tgaaaaaaag cctgcttggt ttaaccttcg cgtccctgat gttctctgcc
    26401 ggttcagcgg ttgccgccga ttacaaaatt gacaaagaag gtcagcacgc ctttgttaat
    26461 ttccgcatcc agcaccttgg ctatagctgg ttatacggca cctttaaaga tttcgacggt
    26521 acttttacct ttgacgaaaa aaatccggct gccgataaag tgaatgtgac aattaacacc
    26581 accagcgtcg atactaatca cgccgaacgc gataaacatc ttcgcagtgc agatttcctc
    26641 aataccgcaa aatatccaca ggcaacattc acctccacca gcgtgaagaa agacggtgac
    26701 gaactggata ttaccggcga tctgacgctg aatggcgtaa ccaaacccgt cacgctggaa
    26761 gcgaaattaa ttggtcaggg cgacgaccca tggggtggta aacgtgcagg cttcgaggcc
    26821 gaaggcaaaa ttaagctcaa ggacttcaat atcaagacag atttaggtcc agcttctcag
    26881 gaagtggatc tgattatttc agtggaaggc gtacagcaga agtaagcgtg aaatgttgcc
    26941 ggatggcacg catccggcaa tgatatttat tctgttggat caggaatgcc cagtgttgta
    27001 ttcagacgtc cacgagactt attaaagatc ttattgccat tttcacgtcc tgcccgacgg
    27061 cgtcgctgtt cttctggcgg taacgcgctt tcttcgcagc aaatctcact acaacaacct
    27121 ttgtattttt ccgcgcatac tggacactga ataaacagca ggtggcagcc atcattttta
    27181 cagttggtat ggctgtcgca cggcgcgccg cactggtggc aatgcgcgat aatctcatcc
    27241 gatatacgtt cgcccatccg ctcgtcaaaa acaaaatttt tgccaataaa acgcaccggc
    27301 aagccctgct cgcgcgcctt acgggcgtat tcaataattc cgccctcgat atgccagact
    27361 ttgttgaatc cgttatgttt catccaagca ctggcctttt cacaacgaat gccgccggtg
    27421 cagtacatga cgattttttt atctttatgt gcctgcatca tctcgactgc ttttggcagc
    27481 tgctcacgga aggtatctgc cggaatttcg agcgcgtttt caaagtgccc cacttcatac
    27541 tcatagtggt tacg
//
LOCUS       DADMHM010000039        26807 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.040, whole genome shotgun sequence.
ACCESSION   DADMHM010000039 DADMHM010000000
VERSION     DADMHM010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 26807)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26807)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26807
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.040"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..325)
                     /locus_tag="JN125_001419"
     CDS             complement(<1..325)
                     /locus_tag="JN125_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rpn family recombination-promoting
                     nuclease/putative transposase"
                     /protein_id="HAY8871248.1"
                     /translation="MTISTTSTPHDAVFKSFLRHPDTARDFIDIHLPAPLRKLCDLTT
                     LKLEPNSFIDEDLRQYYSDLLWSVKTQEGVGYIYVVIEHQSKPEELMAFRMMRYSIAA
                     MQNHLD"
     gene            complement(522..1295)
                     /gene="hisP"
                     /locus_tag="JN125_001420"
     CDS             complement(522..1295)
                     /gene="hisP"
                     /locus_tag="JN125_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ABC transporter ATP-binding protein
                     HisP"
                     /protein_id="HAY8871249.1"
                     /translation="MSENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGK
                     STFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN
                     LWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR
                     VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV
                     STHVIFLHQGKIEEEGAPEQLFGNPQSPRLQQFLKGSLK"
     gene            complement(1303..2019)
                     /locus_tag="JN125_001421"
     CDS             complement(1303..2019)
                     /locus_tag="JN125_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAY8871250.1"
                     /translation="MIEILHEYWKPLLWTDGYRFTGVAITLWLLILSVVIGGVLALFL
                     AIGRVSSNKYIQFPIWLFTYIFRGTPLYVQLLVFYSGMYTLEIVKGTEFLNAFFRSGL
                     NCTVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSTFKMYRCIILPSALRIAL
                     PAYSNEVILMLHSTALAFTATVPDLLKIARDINAATYQPFTAFGIAAVLYLIISYVLI
                     SLFRRAEKRWLQHVKPSSTH"
     gene            complement(2016..2702)
                     /locus_tag="JN125_001422"
     CDS             complement(2016..2702)
                     /locus_tag="JN125_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311219.1"
                     /note="The N-terminal region of this protein, as described
                     by TIGR01726, is a three transmembrane segment that
                     identifies a subfamily of ABC transporter permease
                     subunits, which specificities that include histidine,
                     arginine, glutamine, glutamate, L-cystine (sic), the
                     opines (in Agrobacterium) octopine and nopaline, etc;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HAY8871251.1"
                     /translation="MLYGFSGVILQGALVTLELAISSVVLAVIIGLIGAGGKLSQNRL
                     SELIFEGYTTLIRGVPDLVLMLLIFFGLQIALNTVTEAMGVGQIDIDPMVAGIITLGF
                     IYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPAMMRYALPGIGNNWQV
                     ILKSTALVSLLGLEDVVKATQLAGKSTWEPFYFAIVCGVIYLVFTTVSNGVLLFLERR
                     YSVGVKRADL"
     gene            complement(2792..3574)
                     /gene="hisJ"
                     /locus_tag="JN125_001423"
     CDS             complement(2792..3574)
                     /gene="hisJ"
                     /locus_tag="JN125_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine ABC transporter substrate-binding
                     protein HisJ"
                     /protein_id="HAY8871252.1"
                     /translation="MKKLVLSLSLVLAFSSATAAFAAIPQNIRIGTDPTYAPFESKNS
                     QGELVGFDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQE
                     IAFTDKLYAADSRLVVAKNSDIQPTVESLKGKRVGVLQGTTQETFGNEHWAPKGIEIV
                     SYQGQDNIYSDLTAGRIDAAFQDEVAASEGFLKQPVGKDYKFGGPSVKDEKLFGVGTG
                     MGLRKEDNELREALNKAFAEMRADGTYEKLAKKYFDFDVYGG"
     gene            complement(3795..4577)
                     /gene="argT"
                     /locus_tag="JN125_001424"
     CDS             complement(3795..4577)
                     /gene="argT"
                     /locus_tag="JN125_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine/arginine/ornithine ABC transporter
                     substrate-binding protein ArgT"
                     /protein_id="HAY8871253.1"
                     /translation="MKKSILALSLLVGLSAAASSYAALPETVRIGTDTTYAPFSSKDA
                     KGDFVGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQE
                     IAFSDKLYAADSRLIAAKGSPIQPTLDSLKGKHVGVLQGSTQEAYANETWRSKGVDVV
                     AYANQDLVYSDLAAGRLDAALQDEVAASEGFLKQPAGKDFAFAGSSVKDKKYFGDGTG
                     VGLRKDDAELTAAFNKALGELRQDGTYDKMAKKYFDFNVYGD"
     gene            complement(4843..5412)
                     /locus_tag="JN125_001425"
     CDS             complement(4843..5412)
                     /locus_tag="JN125_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HAY8871254.1"
                     /translation="MKRLIVGISGASGAIYGVRLLQVLRDVTDIETHLVMSQAARQTL
                     SLETDFSLREVQALADVTHDARDISASISSGSFQTLGMVILPCSIKTLSGIVHSYTDG
                     LLTRAADVVLKERRPLVLCVRETPLHLGHLRLMTQAAEIGAVIMPPVPAFYHRPQSLD
                     DVINQTVNRVLDQFAITLPEDLFARWQGA"
     gene            complement(5507..7024)
                     /gene="purF"
                     /locus_tag="JN125_001426"
     CDS             complement(5507..7024)
                     /gene="purF"
                     /locus_tag="JN125_001426"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006820991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HAY8871255.1"
                     /translation="MCGIVGIAGVMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFR
                     LRKANGLVSDVFEARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHN
                     GNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAAT
                     NRLIRGAYACVAMIIGHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLG
                     FDFLRDVAPGEAIYITEEGQLFTRQCADNPVSNPCLFEYVYFARPDSFIDKISVYSAR
                     VNMGTKLGEKIAREWEDLDIDVVIPIPETSCDIALEIARILGKPYRQGFVKNRYVGRT
                     FIMPGQQLRRKSVRRKLNANRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVY
                     LASAAPEIRFPNVYGIDMPSATELIAHGREVDEIRQIIGADGLIFQDLNDLIDAVRAE
                     NPDIQQFECSVFNGVYVTKDVDQGYLDFLDTLRNDDAKAVQRQNEVENLEMHNEG"
     gene            complement(7061..7549)
                     /gene="cvpA"
                     /locus_tag="JN125_001427"
     CDS             complement(7061..7549)
                     /gene="cvpA"
                     /locus_tag="JN125_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="colicin V production protein"
                     /protein_id="HAY8871256.1"
                     /translation="MVWIDYAIIAVIAFSSLVSLIRGFVREALSLVTWGCAFFVASHY
                     YTYLSVWFTGFEDELVRNGIAIAVLFIATLIVGAIVNFVIGQLVEKTGLSGTDRVLGV
                     CFGALRGVLIVAAILFFLDSFTGVSKSEDWSKSQLIPQFSFIIRCFFDYLQSSSSFLP
                     RA"
     gene            complement(7808..8470)
                     /gene="dedD"
                     /locus_tag="JN125_001428"
     CDS             complement(7808..8470)
                     /gene="dedD"
                     /locus_tag="JN125_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416817.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein DedD"
                     /protein_id="HAY8871257.1"
                     /translation="MASKFQNRLVGTIVLVALGVIVLPGLLDGQKKHYQDEFAAIPLV
                     PKAGDRDEPDMMPAATQALPTQPPEGAAEEVRAGDAAAPSLDPATIAANNTEFEPEPA
                     PVAPPKPKPVEPPKPKVEAPPAPKPEPKPVVEEKAAPTGKAYVVQLGALKNADKVNEI
                     VGKLRGAGYRVYTSPSTPVQGKITRILVGPDASKDKLKGSLGELKQLSGLSGVVMGYT
                     PN"
     gene            complement(8460..9728)
                     /gene="folC"
                     /locus_tag="JN125_001429"
     CDS             complement(8460..9728)
                     /gene="folC"
                     /locus_tag="JN125_001429"
                     /EC_number="6.3.2.12"
                     /EC_number="6.3.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tetrahydrofolate
                     synthase/dihydrofolate synthase"
                     /protein_id="HAY8871258.1"
                     /translation="MIIKRTPQAASPLASWLSYLENLHSKTIDLGLERVSQVAARLGV
                     LKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPE
                     SAHTASFAEIESARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVD
                     ADVAVVTSIALDHTDWLGPDRESIGREKAGIFRSAKPAIVGEPEMPSTIADVAQEKGA
                     LLQRRGVEWNYSVTDHDWAFSDAHGTLENLPLPLVPQPNAATALAALRASGLEVSENA
                     IRDGIASAILPGRFQIVSESPRVIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLH
                     DKDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADA
                     KAEDTVLVCGSFHTVAHVMEVIDARRSGGK"
     gene            complement(9798..10712)
                     /gene="accD"
                     /locus_tag="JN125_001430"
     CDS             complement(9798..10712)
                     /gene="accD"
                     /locus_tag="JN125_001430"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HAY8871259.1"
                     /translation="MSWIERIKSNITPTRKASIPEGVWTKCDSCGQVLYRAELERNLE
                     VCPKCDHHMRMTARNRLHSLLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKET
                     GEKDALVVMKGTLYGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLICFS
                     ASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNI
                     AEPKALIGFAGPRVIEQTVREKLPLGFQRSEFLIEKGAIDMIVRRPEMRLKLASILAK
                     LMNLPAPNPEAPREGVVVPPVPDQEPEA"
     gene            complement(10868..11527)
                     /locus_tag="JN125_001431"
     CDS             complement(10868..11527)
                     /locus_tag="JN125_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HAY8871260.1"
                     /translation="MDLIYFLIDFILHIDVHLAELVAEYGVWVYAILFLILFCETGLV
                     VTPFLPGDSLLFVAGALASLETNDLNVHMMVVLMLIAAIVGDAVNYTIGRLFGDKLFS
                     NPDSKIFRCSYLDKTHQFYERHGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYN
                     VIGALLWVLIFTYAGYFFGTLPFIQSNLKLMIVGIIFVSILPGVFEFIRHKRAAARAA
                     K"
     gene            complement(11610..12422)
                     /gene="truA"
                     /locus_tag="JN125_001432"
     CDS             complement(11610..12422)
                     /gene="truA"
                     /locus_tag="JN125_001432"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HAY8871261.1"
                     /translation="MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALS
                     QVANEPITVFCAGRTDAGVHGTGQVVHFETTAQRKDAAWTLGVNANLPGDIAVRWVKA
                     VPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGEND
                     FTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHN
                     QPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDLPKPPMGPLFLAD"
     gene            complement(12422..13435)
                     /locus_tag="JN125_001433"
     CDS             complement(12422..13435)
                     /locus_tag="JN125_001433"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HAY8871262.1"
                     /translation="MSEGWNIAVLGATGAVGEALLETLAERQFPVGEIYALARNESAG
                     EQLRFGGKTITVQDAAEFDWTQAQLAFFVAGKEATAAWVEEATNSGCLVIDSSGLFAL
                     EPDVPLVVPEVNPFVLTDYRNRNVIAVPDSLTSQLLAALKPLIDQGGLSRISVTSLIS
                     ASAQGKKAVDALAGQSAKLLNGIPIDEEDFFGRQLAFNMLPLLPDSEGSVREERRIVD
                     EVRKILQDEGLMISASVVQAPVFYGHAQMVNFEALRPLAAEEARDAFAQGEDIVLSEE
                     NEFPTQVGDASGTPHLSVGCVRNDYGMPEQVQFWSVADNVRFGGALMAVKIAEKLVQE
                     YLY"
     gene            complement(13501..14637)
                     /gene="pdxB"
                     /locus_tag="JN125_001434"
     CDS             complement(13501..14637)
                     /gene="pdxB"
                     /locus_tag="JN125_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-phosphoerythronate dehydrogenase PdxB"
                     /protein_id="HAY8871263.1"
                     /translation="MKILVDENMPYARDLFSRLGEVTAVPGRPIPVAQLADADALMVR
                     SVTKVNESLLAGKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSS
                     LLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRS
                     LDELVQHADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALL
                     TCLNEGQKLSVVLDVWEGEPELNVELLTKVDIGTPHIAGYTLEGKARGTTQVFEAYSK
                     FIGHEQHVALDTLLPAPEFGRITLHGPLDQPTLKRLVHLVYDVRRDDAPLRKVAGIPG
                     EFDKLRKNYLERREWSSLYVICDDASAASLLCKLGFNAVHHPAR"
     gene            14736..15731
                     /locus_tag="JN125_001435"
     CDS             14736..15731
                     /locus_tag="JN125_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis regulator Flk"
                     /protein_id="HAY8871264.1"
                     /translation="MIQPISGPPPGQPPGQGDNLPSGAGNQPLSSQQRTSLESLMTKV
                     TSLTQQQRAELWAGIRHDIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQ
                     LGEYLRLGNNRQAVTDYIRHNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQPQQREAT
                     DRPLLPAEHNALKQLVTKLTAATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWL
                     QARQTLSQQNTPTLESLQMALKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDIL
                     NQLYQRRVKGIDPRDMQPLLNPFPPMMDTLQNMATRPVLWILLVAIILMLVWLVR"
     gene            complement(15728..16906)
                     /locus_tag="JN125_001436"
     CDS             complement(15728..16906)
                     /locus_tag="JN125_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8871265.1"
                     /translation="MTAVSQTETRSSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHH
                     DLGYGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGGALLLAA
                     ILPVSAPLKFALLVVGRLILGFGESQLLTGALTWGLGIVGAKHSGKVMSWNGMAIYGA
                     LAVGAPLGLLIHSHYGFAALAITTMVLPLLAWACNGTVRKVPALAGERPSLWSVVGLI
                     WKPGLGLALQGVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVVMRVMFGWMPDRF
                     GGVKVAIVSLLVETVGLLLLWQAPGAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQ
                     VRGTALGGYAAFQDIALGVSGPLAGMLATTFGYSSVFLAGAISAVLGIIVTILSFRRG
                     "
     gene            complement(17199..18419)
                     /gene="fabB"
                     /locus_tag="JN125_001437"
     CDS             complement(17199..18419)
                     /gene="fabB"
                     /locus_tag="JN125_001437"
                     /EC_number="2.3.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase I"
                     /protein_id="HAY8871266.1"
                     /translation="MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGM
                     RSHVWGNVKLDTTGLIDRKVVRFMSDASIYAFLSMEQAIADTGLSPEAYQNNPRVGLI
                     AGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSIS
                     SACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKA
                     SRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEG
                     AVRCMKMAMHGVDTPIDYLNSHGTSTPVGDVKELAAIREVFGDKSPAISATKAMTGHS
                     LGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGF
                     GGTNATLVMRKLKD"
     gene            18578..20584
                     /gene="mnmC"
                     /locus_tag="JN125_001438"
     CDS             18578..20584
                     /gene="mnmC"
                     /locus_tag="JN125_001438"
                     /EC_number="1.5.-.-"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HAY8871267.1"
                     /translation="MKHYSIQPANLEFNAEGTPVSRDFDDVYFSNDNGLEETRYVFLG
                     GNQLEVRFPEHPHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK
                     FPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCHRLLLDEGRVTLDLWFGDINEL
                     TSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFTSAGFVRR
                     GLQDAGFTMQKRKGFGRKREMLCGVMEQTLPLPCSAPWFNRTGSSKREAAIIGGGIAC
                     ALLSLALLRRGWQVTLYCADEAPALGASGNRQGALYPLLSKHDEALNRFFSNAFTFAR
                     RFYDQLPVKFDHDWCGVTQLGWDEKSQHKITQMLSMDLPAELAVAVEANAVEQITGVA
                     TNCSGITYPQGGWLCPAELTRNVLELAQQQGLQIYYQYQLQNLSRKDDCWLLNFAGDQ
                     QATHSVVVLANGHQISRFSQTSTLPVYSVAGQVSHIPTTPELAELKQVLCYDGYLTPQ
                     NPANQHHCIGASYHRGSEDTAYSEDDQQQNRQRLIDCFPQAQWAKEVDVSDKEARCGV
                     RCATRDHLPMVGNVPDYEATLVEYASLAEQKDEAVSAPVFDDLFMFAALGSRGLCSAP
                     LCAEILAAQMSDEPIPMDASTLAALNPNRLWVRKLLKGKAVKAG"
     gene            complement(20705..20983)
                     /locus_tag="JN125_001439"
     CDS             complement(20705..20983)
                     /locus_tag="JN125_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfcL family protein"
                     /protein_id="HAY8871268.1"
                     /translation="MIAEFESRILALIDGMIDHASDDELFASGYLRGHLTLAIAELES
                     GDDHSAQAVHTTVSQSLEKAIGAGELSPRDQALVTDMWENLFQQASQQ"
     gene            complement(21017..21565)
                     /locus_tag="JN125_001440"
     CDS             complement(21017..21565)
                     /locus_tag="JN125_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P hydroxylase"
                     /protein_id="HAY8871269.1"
                     /translation="MNSTHHYEQLIEIFNSCFADEFNTRLIKGDDEPIYLPADAEVPY
                     NRIVFAHGFYASAIHEISHWCIAGKARRELVDFGYWYCPDGRDAQTQSQFEGVEVKPQ
                     ALDWLFCVAAGYPFNVSCDNLEGDLEPDRVVFQRRVHAQVMDYLTNGIPERPARFIKA
                     LQNYYHTLELTAEQFPWPEALN"
     gene            complement(21565..22374)
                     /locus_tag="JN125_001441"
     CDS             complement(21565..22374)
                     /locus_tag="JN125_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HAY8871270.1"
                     /translation="METFNSLFMVSPLLLGVLFFVAMLAGFIDSIAGGGGLLTIPALM
                     AAGMSPANALATNKLQACGGSISATIYFIRRKVVSLSDQKLNIAMTFVGSMSGALLVQ
                     YVQADVLRQILPILVICIGLYFLLMPKLGEEDRQRRMYGLPFALIAGGCVGFYDGFFG
                     PAAGSFYALAFVTLCGFNLAKATAHAKLLNATSNIGGLLLFILGGKVIWATGFVMLVG
                     QFLGARMGSRLVLSKGQKLIRPMIVIVSAVMSAKLLYDSHGQEILHWLGMN"
     gene            complement(22374..23198)
                     /gene="mepA"
                     /locus_tag="JN125_001442"
     CDS             complement(22374..23198)
                     /gene="mepA"
                     /locus_tag="JN125_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-insensitive murein endopeptidase"
                     /protein_id="HAY8871271.1"
                     /translation="MNKTAIALLALLASSASLAATPWQKITQPVPGSAQSIGSFSNGC
                     IVGADTLPIQSEHYQVMRTDQRRYFGHPDLVMFIQRLSSQVSNLGMGTVLIGDMGMPA
                     GGRFNGGHASHQTGLDVDIFLQLPKTRWTSAQLLRPQALDLVSRDGKHVVSTLWKPEI
                     FSLIKLAAQDKDVTRIFVNPAIKQQLCLDAGTDRDWLRKVRPWFQHRAHMHVRLRCPA
                     DSLECEDQPLPPPGDGCGAELQSWFAPPKPGTTKPEKKTPPPLPPSCQALLDEHVI"
     gene            complement(23202..24287)
                     /gene="aroC"
                     /locus_tag="JN125_001443"
     CDS             complement(23202..24287)
                     /gene="aroC"
                     /locus_tag="JN125_001443"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HAY8871272.1"
                     /translation="MAGNTIGQLFRVTTFGESHGLALGCIVDGVPPGILLTEADLQHD
                     LDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSIGLLIENTDQRSQDYSAIKDVF
                     RPGHADYTYEQKYGLRDYRGGGRSSARETAMRVAAGAIAKKYLAEKFGIEIRGCLTQM
                     GDIPLEIKDWSLVEQNPFFCPDPDKIDALDELMRALKKEGDSIGAKVTVVASGVPAGL
                     GEPVFDRLDADIAHALMSINAVKGVEIGDGFDVVALRGSQNRDEITKDGFQSNHAGGI
                     LGGISSGQQIIAHMALKPTSSITVPGRTINRFGEEVEMITKGRHDPCVGIRAVPIAEA
                     MLAIVLMDHLLRQRAQNADVKTDIPRW"
     gene            complement(24322..25254)
                     /gene="prmB"
                     /locus_tag="JN125_001444"
     CDS             complement(24322..25254)
                     /gene="prmB"
                     /locus_tag="JN125_001444"
                     /EC_number="2.1.1.298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3 N(5)-glutamine
                     methyltransferase"
                     /protein_id="HAY8871273.1"
                     /translation="MDKIFVDEAVNELQTIQDMLRWSVSRFSAANIWYGHGTDNPWDE
                     AVQLVLPSLYLPLDIPEDMRTARLTSSEKHRIVERVIRRVNERIPVAYLTNKAWFCGH
                     EFYVDERVLVPRSPIGELINNKFAGLISKQPQHILDMCTGSGCIAIACAYAFPDAEVD
                     AVDISPDALAVAEQNIEEHGLIHNVIPIRSDLFRDLPKVQYDLIVTNPPYVDAEDMSD
                     LPNEYRHEPELGLASGTDGLKLTRRILGNAADYLADDGVLICEVGNSMVHLMEQYPDV
                     PFTWLEFDNGGDGVFMLTKEQLLAAREYFAIYKD"
     gene            25420..25971
                     /gene="smrB"
                     /locus_tag="JN125_001445"
     CDS             25420..25971
                     /gene="smrB"
                     /locus_tag="JN125_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease SmrB"
                     /protein_id="HAY8871274.1"
                     /translation="MKKKTTLSEEDQALFRQLMAGTRKIKQDTIVHRPQRKKISEVPV
                     KRLIQEQADASHYFSDEFQPLLNTEGPVKYVRPDVSHFEAKKLRRGDYSPELFLDLHG
                     LTQLQAKQELGALIAACRREHVFCACVMHGHGKHILKQQTPLWLAQHPHVMAFHQAPK
                     EYGGDAALLVLIEVEEWLPPELP"
     gene            complement(26028..26792)
                     /locus_tag="JN125_001446"
     CDS             complement(26028..26792)
                     /locus_tag="JN125_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004985136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2544 domain-containing protein"
                     /protein_id="HAY8871275.1"
                     /translation="MSGDSGGQSTEFEFHLIIATPDSVNYAIFKATFMPNSQPDLVSW
                     TGDSSTQPSMSKISDSRVSMSACPGLEQYDSQTKTGWTCNELKMFVYYDGNLHGCPWI
                     VSSFVKSRDPFAKTYDDDFPDYIGPTKVSSSCPAVPLASYDVSWNENYVVHNKVVRLQ
                     STGGVIEQTLPTFLMENGKLCNGNNFDERGVYCRFIAQQMTFSTSGCDNAKVTVTPEP
                     QPITSRQLHDMKLRVDTTSRQPIDSTCRFTYILNMY"
BASE COUNT         6616 a         7330 c         6753 g         6108 t
ORIGIN      
        1 catcaagatg gttttgcatt gccgcaatgg aataacgcat catgcgaaaa gccattaatt
       61 cttccggctt actttggtgc tctatcacta cataaatata acccactccc tcctgcgttt
      121 tcacagacca caagaggtcg gaataatatt gccgcaggtc ttcatcaata aaactgtttg
      181 gttccagttt aagcgtcgtt aaatcacaca gtttgcgcag cggcgcggga agatgaatat
      241 caataaaatc ccgcgcggtg tctggatggc gtaaaaaaga tttaaatacc gcatcatgcg
      301 gcgtggaagt tgtcgatatt gtcatggcgt tccgtcaccc ctcaaattta agatgacgcg
      361 acaataacca cgattaacac ccaatgcagc aggcagtttt tatctttgga cagcgaattc
      421 agaagtattt ttagcggact gcaactttta catttcagcg gaagctgact cgcaaattcc
      481 ccatgaaaat actccggcag cgttagccac cggagaggaa attatttcag cgatccctta
      541 aggaactgtt gcagacgagg gctttgcggg ttgccaaata actgctccgg cgcgccctct
      601 tcttctattt tcccctgatg gaggaaaatg acatgagtag aaacatggcg agcaaagccc
      661 atttcgtgag tcactaccac catggttttc ccctcttctg ccagttgctg cataatacgc
      721 aacacttcgc ctaccagttc aggatcgagc gccgaggtag gttcatcaaa cagtaaaact
      781 tccggttcca tcgccagcgc ccgcgcgata gaaacacgct gttgctgacc gccggaaaga
      841 tgcaccggat atttcccctg cgcacgttcg tctatcccga cttttgccag atacttgacc
      901 gcccgctcgc gcgcttcctg cttgctcagg cccaacacct gaatcggcgc ttccatgacg
      961 ttttccagca ccgtcatatg gctccagaga ttgaagtgct ggaataccat cgtcaggcgt
     1021 gtgcgcagta agcgcagttg atttttatcg gcgactttga gttgaccgtc tttgtcgcgc
     1081 accagattga tcgtctggcc attgaccacg atcgaccctt cactcggttt ttcgaggaag
     1141 ttaatgcagc gcagaaaggt acttttcccc gatcccgacg atccgatgat gcttattaca
     1201 tctccggcat tcgcttgcag tgagacccct ttcagcactt catgttcgcc gtagcgtttg
     1261 tgcaaatcga taacgtttaa tttattctcg gacatcgtat tctcagtgcg ttgaagaagg
     1321 tttcacatgc tgcaaccagc gtttttccgc tctgcgaaag aggctgatca ggacataaga
     1381 gatgattaaa tagagcaccg cggcaatgcc gaaggcggta aaaggttgat acgtggcggc
     1441 gttaatatcg cgggctattt tcagcagatc cggcacagtg gccgtaaacg ccagcgcagt
     1501 agagtgcagc atcaggatca cttcgttgct gtatgccggt aacgcaatac gcagcgcaga
     1561 aggcaaaata atgcaacgat acattttaaa agtcgagaag ccataggctc tggcggcttc
     1621 aatttcccca tgcggaaccg aacggattgc cccagcaaaa atctcggtag tgtaagcgca
     1681 ggtgttaagc gtcagcgcca gcacggtaca gttcaggcca ctgcggaaga aagcgttaag
     1741 gaattcggtt cccttaacaa tctcaagcgt gtacatgccg gaatagaaca ccagcaactg
     1801 aacatacagc ggcgtaccgc gaaaaatata ggtaaataac cagattggaa actggatgta
     1861 tttattactg gagacacgac caatcgccag aaacagcgcc aggactccgc ctatcactac
     1921 cgacaaaata agcagccaca gagtgatcgc cacaccagta aagcgataac cgtcggtcca
     1981 cagcagcggt ttccagtatt catgtaagat ttcgatcaca ggtcagccct cttcacaccc
     2041 acggagtagc ggcgctcaag gaacagcagc acaccattgg aaacagtggt gaaaaccagg
     2101 taaatcacgc cacagacgat ggcgaaatag aacggttccc aggtactttt gcctgccagt
     2161 tgggtggctt tgaccacatc ttccaggccg agtaacgaaa ccagtgcggt agatttgagg
     2221 atcacctgcc agttgttgcc aatgcctggc agggcgtaac gcatcatcgc cggaaacatg
     2281 atccgccgaa acacttgccc acgagtaaaa ccgaacgccg tcgccgcctc tatatgtcct
     2341 ttcggcactg ccataaaagc accacggaac gtttcggtaa aataagcacc gtagataaaa
     2401 ccgagagtga taataccagc gaccatcgga tcgatatcaa tctgcccgac gcccatcgcc
     2461 tccgtcaccg tgtttagcgc aatctgcaaa ccgaagaaaa tcagcagcat caacactaag
     2521 tccggcacgc cacgaatcag cgtggtgtac ccttcgaaaa tcagctccga aagccgattt
     2581 tgcgagagct taccgccagc gccaattaaa ccgatgatta cagcgagcac tacagagctg
     2641 atagccagct ccagcgtgac gagcgcaccc tgtaaaataa cacctgaaaa cccatacaac
     2701 atgctgcctg tcctgtcgtg tgtggtgaat taccgcctct tgtctccctc cggttacccg
     2761 aagggagcgg gctttctttc accgatggcg attagccacc ataaacatca aaatcgaagt
     2821 actttttcgc taatttctcg taagtaccgt cagcgcgcat ttcggcaaag gctttgttca
     2881 gtgcttcgcg cagttcgtta tcttctttac gcaggcccat gccggtccct acgccaaaca
     2941 gtttttcatc tttaacagac gggccaccga atttgtaatc tttaccgaca ggttgtttga
     3001 ggaaaccttc gctggcagcg acctcatcct ggaacgcggc atcaatacgt ccggcagtca
     3061 ggtcagaata aatgttgtcc tgcccctgat acgagacgat ttcaatgcct tttggtgccc
     3121 aatgttcatt accgaacgtc tcctgggtgg tgccctgcaa tacgcctacc cgtttgcctt
     3181 tcagcgactc gactgtcggc tgaatgtcag aatttttcgc caccaccaaa cgagaatcgg
     3241 cagcgtacag tttgtcggtg aaggctattt cttgctgacg tttttccgta atggaaagcg
     3301 atgacatgat ggcgtcaatc ttcttcgctt ttaaggacgg gattaacgca tccagcggat
     3361 tttcgacaaa cgtacattgc gtattgatgc gtttgcataa ttcctttgcc agatcgatat
     3421 cgaagccaac cagttcgcct tgtgaatttt ttgattcaaa tggcgcatag gtcgggtcgg
     3481 taccgatgcg gatgttttgc ggaatcgcag caaatgccgc agttgcgctg gagaaggcca
     3541 gaaccagaga gagcgatagc accagttttt tcataatgtc ctcaactgac agtcttttta
     3601 tagggaatat ttacaggttt gttacactta tcgtgccata aaattgacca tcaaggcaaa
     3661 atatcccgcc ccgttagacg tattattttt cattaaaaat gcttaagtat gcatttcaat
     3721 gcaccacgat agtgcaacaa acctagcgtg caccatgatg atcattccat caggtacagc
     3781 ttcccagcga cgtatcagtc accgtagaca ttaaagtcga aatacttttt cgccatcttg
     3841 tcgtaggtgc cgtcctgacg cagctcgcca agcgccttat tgaaggcagc cgtcagttca
     3901 gcatcatctt tacgtagccc tacaccggtg ccatcaccga agtatttttt gtcttttact
     3961 gatgagccag caaaggcgaa atctttacca gcaggttgct tgaggaatcc ttcgctggca
     4021 gcaacttcat cttgtaacgc agcatccaga cgtcctgcag ccagatcgga atagaccaaa
     4081 tcctggttgg cataggccac cacatccacg cctttgctac gccaggtctc gttagcgtaa
     4141 gcttcctggg ttgatccctg cagcacacca acatgtttac ctttcagtga atccagcgtt
     4201 ggctgaatcg gtgaaccttt ggcagcaatc aaacgagaat ctgcggcgta cagcttgtcg
     4261 gagaaagcaa tctcctgctg acgtttatcg gtaatggaaa gcgacgaaat aatggcgtcg
     4321 atttttttcg ctttcagtga ggggatcagc gcgtcaaagt cactggcaac ccaggtacat
     4381 ttcacctgca tccgtttgca catctcgtta ccgagatcga tatcaaagcc aacaaaatca
     4441 cctttagcat ctttcgacga gaacggcgca taggtggtat cggttccgat acgtaccgtc
     4501 tccggtagcg ccgcatagct ggaagccgct gcggagagac cgactaacaa agacagagcg
     4561 agaatcgact tcttcataca taaccctcaa gtgaaaatgg cttttttatg ttgtgtattg
     4621 tgttgtgtgt ttgcaggctc tttcatgcag gtcttatgcc atcttgacga caacagtaac
     4681 attcaacgtt aaatatgtta ataagacgtt gcattattgt cctgaagttg aagatagcag
     4741 gtatagcggt tgaatcgcag cgtttcgatt gaatggcaga aacaaaatgt cgaggatttg
     4801 atcgcggttg caaaattgcc ctgaaacagg gcaacagcgg agttatgcgc cctgccagcg
     4861 ggcaaagaga tcttcaggaa gggttattgc aaactggtca agaacacgat taaccgtctg
     4921 atttatcaca tcatcaaggg attgcgggcg atgataaaac gccggaacag gaggcataat
     4981 caccgcaccg atttctgccg cctgagtcat taaacgcaga tggcctaagt gcaatggtgt
     5041 ttcacgcacg cagagcacca acgggcgacg ctctttcagc accacatctg ccgcacgggt
     5101 cagtaagcca tcagtatagc tatggacaat gccggaaagg gttttgattg aacagggtaa
     5161 aatcaccatc cccagcgtct ggaaagaacc ggaagagatg ctggcggaaa tatcgcgcgc
     5221 atcgtgcgtg acatcagcta atgcctgcac ttcgcgcagg gaaaaatccg tttcgaggga
     5281 taaggtctgg cgcgccgcct ggctcatcac cagatgcgtt tcgatatctg tgacatcgcg
     5341 cagaacctgt aataagcgca cgccataaat cgcgccgctg gcaccgctga tgcctacaat
     5401 gagtcgtttc ataaatagtt gccctgtcag acttgcaggc agactttgca gtatttcggc
     5461 gggagttgca agtcagggtg ccagaccggc accctcagcg aaggcatcat ccttcgttat
     5521 gcatttcgag attttccact tcgttctgac gttgcactgc tttggcgtca tcattacgta
     5581 acgtatcgag gaaatcgagg tagccctgat caacatcttt ggtgacgtag acgccgttga
     5641 acaccgagca ttcaaactgc tggatatccg gattttcagc gcgaacggcg tcgatcagat
     5701 cgttcagatc ctggaaaatc aacccgtcag caccgatgat ctggcgaatt tcatcaactt
     5761 cgcgaccgtg agcgatcagt tccgtggcgc tcggcatatc aataccataa acgttcggga
     5821 agcgaatttc cggtgccgca gaagcgaggt acactttctt cgctccggct tcgcgtgcca
     5881 tctcgataat ctgctcagaa gtggtgccac ggacgatgga gtcgtcgacc agcaggacgt
     5941 ttttatcgcg gaactcggcg cggttggcgt tcagtttacg gcgcacggac ttacgacgca
     6001 gctgctggcc cggcatgatg aaggtgcggc caacatagcg gtttttaacg aagccctggc
     6061 ggtacggctt gcccagaata cgagcaattt ccagcgcgat atcacacgag gtttccggga
     6121 tcgggatcac cacgtcgata tccagatctt cccattcgcg ggcaattttc tcacccagtt
     6181 tcgtgcccat attcacacgc gcgctgtaaa cggaaatttt gtcgataaac gagtccgggc
     6241 gggcaaagta tacatactca aacaggcacg gattgctgac cggattgtca gcacattgac
     6301 gggtaaacaa ctgcccttct tcagtgatgt aaatcgcttc gcccggcgcg acgtcacgca
     6361 ggaaatcaaa gcccagcgta tcgagcgcta cgctttcgga agcgaccata tattctgtac
     6421 ggttctcgtc aatatcacgt tttcccagta ccagcggacg aatcccgttt ggatcgcgga
     6481 aagcaaccat accgtggccg ataatcatcg ccacacaggc atatgcgccg cggattaagc
     6541 ggtttgtggc agcaatggca gcgaaaatat tgtcggcttc cagcgggtag tggcggaagt
     6601 tgtccagctc gctagcgaag atattaagca gaatttccga gtcggaagtg gtgttgatgt
     6661 ggcggcgttt ttcttcaaac agttttttac gcaactcgtg agcgttggtc agattgccgt
     6721 tgtgggcaag cgtaatgcca tacggggagt taacgtaaaa cggctgcgct tcagaggcgc
     6781 tggagctgcc agccgtaggg taacgcacat gaccaatgcc catattgccc tgcaaacgct
     6841 gcatatggcg agcttcaaat acatcgctca ccagcccgtt cgctttacgc aaacggaagc
     6901 agttattggc atctatggtg atgatgccgg cggcatcctg accgcgatgc tgaagcaccg
     6961 ttaaggcatc ataaatcgac tggttaaccg gcataacacc ggcgataccg acaataccgc
     7021 acatacgtct ttttcctcgt taagccacat ctcagagcac ttacgctctg ggcaagaaac
     7081 ttgacgagct ttgcagataa tcaaaaaaac atctgatgat aaaactgaac tgcgggatca
     7141 gctgtgattt gctccagtct tcgcttttcg acaccccggt aaaggagtcg agaaagaaga
     7201 gaatggcggc aacaatcaac acaccgcgca acgcaccgaa acagacgccc agcacccgat
     7261 cggtgcctga caaccccgtt ttctccacca actggcctat cacgaagttc acgatagcac
     7321 caacgatcag ggtagcgata aacagtaccg cgatggcaat tccatttcga accagttcgt
     7381 cttcaaagcc cgtaaaccag actgacaggt aagtgtagta atgactggca acaaagaaag
     7441 cacaacccca tgtcaccagc gataacgctt cacgaacaaa gccgcggatc aggctaacca
     7501 gagaggaaaa agcaatcacc gcgattatgg cgtaatcaat ccagaccata tgtgtcccac
     7561 gattttacgc cctgtcatcc tgttcggggc gcattctaac agaaaaagaa aacgtttgcg
     7621 tagggatttc cttcccacgc atcaataaaa atggcgctga aaaaatattc aacgccatcg
     7681 actttttatg cctttgcggc atcgtgcaat gcgtgtcgga tgcggcgtaa acgccttatc
     7741 cgacctacgg ttctaacact gcccaggcct gataagacgc gccagcgtcg catcaggcaa
     7801 gactgtatta attcggcgta tagcccatta ccacgccact taagccagaa agttgcttca
     7861 actcacccag cgaacctttc agcttatctt tcgaggcatc cggcccaacc agaatacggg
     7921 taattttacc ctgcactggc gtggatggcg acgtataaac ccgataaccg gcaccgcgca
     7981 gcttaccgac aatctcattc actttatcgg catttttcag cgcacccagt tgcacaacat
     8041 aggctttacc cgttggcgct gctttttctt ccacgaccgg cttcggttct ggcttcggcg
     8101 caggtggtgc ttcaaccttc ggtttaggcg gctccaccgg tttcggcttc ggtggggcga
     8161 ccggtgcagg ttccggttca aactcggtgt tattggctgc aatagtggcc ggatcgagcg
     8221 acggtgctgc ggcatcacct gcccgcacct cttccgctgc gccttccggc ggctgcgtcg
     8281 gcaacgcctg ggtggcggct ggcatcatat caggctcatc gcgatcgccc gcttttggaa
     8341 ccagcgggat agccgcaaac tcatcctgat aatgtttttt ctgcccgtcc agcagccctg
     8401 gaagtacaat cacccccagc gccaccagca cgatcgtgcc cactaaccga ttctgaaact
     8461 tacttgccac cgcttctcct cgcgtcaatc acttccatga catgtgcgac cgtgtggaaa
     8521 gaaccacaca ccagcacggt gtcttccgct ttagcgtccg ccattgcggc atcccatgcc
     8581 tgcgcaacgc tatcaaatga tttgccgtta cccaaatgct caagcagttg ttctgccgtg
     8641 gcaccgcgcg gcccttccag tggcgcacaa taccagtcat caaccacgct tttcaaccag
     8701 gccagagttc cggcaatatc tttatcatgt agcataccga taaccgccag cacgcgcccg
     8761 tttttcggta gcgctttcat acgcccggtg agatattccg ccgcatgtgg attatgcgcg
     8821 acatcaaaaa taacgcgtgg cgactcgctc acaatctgga aacgtcccgg caaaattgcg
     8881 ctggcaatcc cgtcgcgaat ggcattttca ctgacttcca gcccgctggc acgcagtgcc
     8941 gccagcgctg ttgcggcatt cggttgcggg acaagcggca acggcagatt ttccagcgtg
     9001 ccgtgagcat cgctaaacgc ccagtcatga tcggtgacgg aatagttcca ctcaacgccc
     9061 cgacgttgta acagtgcacc tttttcctgc gccacatcag caatggtaga aggcatttcc
     9121 ggctcaccga caattgccgg ttttgcgctg cgaaagatgc ctgctttctc gcgaccaata
     9181 ctttcgcgat ctggccccag ccagtcggta tgatccagcg caatactggt tactaccgcg
     9241 acatcggcat cgacaatatt ggttgcgtcc agacgaccgc ccagccctac ttccagaatc
     9301 accacgtcaa gttgtgcctg tttgaacagc cacaacgccg acagcgtacc gtactcgaaa
     9361 taggtcaggg aaatatcacc gcgtgccgat tcaatctccg caaaagaggc ggtgtgggcc
     9421 gattccggca attcctgacc ctgcacacgt acgcgctcgg tataacgcac cagatgcggc
     9481 gaactgtaga cgcccacttt gtaccctgcc gccatcagaa tcgactccag cgtacggcag
     9541 gtggtgcctt tgccattcgt acccgcaacg gtaaacacaa atggcgctgg tttcagaacg
     9601 ccaagacgag ccgcgacctg gctcacgcgc tcaaggccga gatcgatagt tttactgtgc
     9661 aggttttcca gataagaaag ccacgaagcc agaggcgacg cggcttgagg agtgcgtttg
     9721 ataatcatgg tatccgctga ttcgttacgg tgagaatagc aaaagggcag agccagtggc
     9781 cctgccctta tcagttatca ggcctcaggt tcctgatccg gtaccggggg taccactacg
     9841 ccttcacgcg gcgcttcagg attcggcgct ggcagattca tcaacttcgc cagaatgctc
     9901 gccagtttca ggcgcatttc cggacgacgg acgatcatgt cgatcgcgcc tttctcgatc
     9961 aggaattcac tgcgctggaa tcctagcggc agtttttcgc gaacggtctg ttcgataaca
    10021 cgcggaccgg caaagccaat taacgctttc ggttcagcga tgttgagatc gcccagcatg
    10081 gcgaaacttg cagaaacacc gcccatcgtc gggtcggtca gcacggagat gtacggcaag
    10141 ccgcgctcct gcatttttgc cagtgccgca gaggttttcg ccatctgcat cagcgacatc
    10201 agtgcttcct gcatacgtgc gccaccagag gcggagaagc agatcagcgg gcagttatct
    10261 tccagcgcct gctcaacggc acgcacgaaa cgtgcaccca caacagaccc cattgaaccg
    10321 cccataaagg cgaactcgaa tgccgcagcg acaaccggca ttccatacag agtgcctttc
    10381 atcaccacca gcgcatcttt ttcgccggtt tctttctgcg cagaagccag acggtcttta
    10441 tacttcttgg agtcacgaaa cttcagcaca tctttcggct caagctcgct acccagctcc
    10501 acaaggcttc cttcatctaa caggctatgc aggcgattac gcgctgtcat acgcatgtga
    10561 tggtcacact tcggacagac ctcaagatta cgttccagct cagcgcggta taaaacctga
    10621 ccgcagctat cacacttagt ccacacccct tcaggaatgc tcgccttgcg ggtgggagta
    10681 atgttgcttt taattcgttc aatccagctc attagggacc tttctgtctg aacctggttc
    10741 gatgccagtt ttatctttgg ggacgcataa tgccattttt gcccccaaca gaccatgaat
    10801 gttgcacatt aaaacataac agcccgaaac tttggataaa aaagtggtcg aaccgcggag
    10861 ttacttttta ttttgcggcg cgtgccgcag cgcgtttgtg acgaataaat tcgaaaaccc
    10921 caggcaatat tgaaacaaaa ataatgccaa caatcatcag cttaaggttg ctctgaatga
    10981 aggggagcgt gccgaagaaa taacccgcgt aggtaaaaat cagtacccac aacagtgcgc
    11041 cgatcacgtt ataagcggcg aaatgacggt acgacatgtg gcccattccc gcaacaaacg
    11101 gcgcgaacgt tctgacgatc ggtacaaaac gggcgagaat aatcgttttg ccgccatgtc
    11161 tctcgtaaaa ctgatgagtc ttatcaagat aactgcaacg aaagattttc gaatccgggt
    11221 tactgaacag tttgtcacca aataaccgtc caatggtata gttcactgca tcaccgacaa
    11281 tagcggcaat caacataagc accaccatca tatggacatt gagatcgtta gtttccagcg
    11341 acgccaatgc accagcaaca aacagcagcg aatcaccagg caggaatggc gttaccacca
    11401 gccccgtttc gcagaacaga atcaaaaaca gaatggcata aacccagacg ccgtactccg
    11461 cgaccagctc tgccagatgc acgtcaatgt gcaggataaa atcgatgagg aaataaatca
    11521 ggtccatatt tgcctatgcc ttgtactcgt catctttcag gctgtaacta cgttggctac
    11581 agcctgaaat gttccgagca ttattctcgt tagtccgcca gaaatagcgg gcccattggc
    11641 ggttttggaa gatcataccg gtcagggtaa tccaccgcga ccagatacag cccttccgct
    11701 tttgccgttg ctgccgccag cgttctgtcc tttgccgcca gcaactctgc tatccagctc
    11761 tccggctggt tgtgggcacc gacttccatc aggctgccga caatattcct gaccatatga
    11821 tgtacaaagg cattcgcttt gatatctacc accacataag gaccgtgacg cgtgacatta
    11881 atatgcataa cgttgcgcca cggggttcgg gactggcact gcaccgcacg gaacgaggtg
    11941 aaatcattct cgcccagcaa gcattgcgca gcccgatgca tccgttcagc gtccagcggt
    12001 tcgtaaaaat gggttacccc tttactcagt accgccgggc gcagccgatg attgtagatg
    12061 atgtagcgat aacggcgagc cgtggcgcta aatcgggcat gaaaatcatc aggtacagct
    12121 ttaacccaac gcacggcgat gtcaccaggt aaattcgcat ttacgcccaa ggtccacgcc
    12181 gcgtctttgc gctgcgcggt tgtttcgaaa tgcaccacct gcccggtacc gtgtacccct
    12241 gcgtcagtac gcccggcgca gaagacggtg atgggttcgt tcgccacctg ggagagcgcc
    12301 ttttccagct tctcctgcac actgcggact tcattctgcc gttgccagcc gtaatactta
    12361 ctgccgtcgt actcaatgcc cagcgcaatt ttataaactg gcagttgttg ctggtcggac
    12421 attagtacag atactcctgc accagtttct cggcgatttt tactgccatc agcgcgccgc
    12481 caaagcgaac gttatcggcc accgaccaga actggacttg ctccggcata ccgtagtcat
    12541 tacgcacgca gccaacagaa agatgcggcg tacccgaagc atcccctacc tgagtcggga
    12601 attcgttctc ttcagagagc acaatatctt cgccctgagc aaacgcatca cgcgcttctt
    12661 ctgccgccag cggacgcagt gcttcaaagt tgaccatctg ggcatgaccg tagaataccg
    12721 gtgcctggac gacgcttgcc gaaatcatca gcccttcgtc ctgcaggatt ttgcgtactt
    12781 cgtcaacgat acgacgttct tcacgcacgc taccttcgct atccggcaac aacggcagca
    12841 tattgaacgc cagttgacga ccgaagaaat cttcttcgtc aatcggaatg ccgttgagca
    12901 atttcgcact ctgccccgct aacgcatcga ccgctttttt gccctgggcg gaggctgaaa
    12961 tcaggctggt aacactgata cgcgacaaac cgccctgatc gattaacggt ttcagtgccg
    13021 ccagcagctg gctggtcaga ctgtctggta cggcgatgac attccggttg cggtaatcgg
    13081 tcagtacaaa cgggtttact tccggcacca ccagcggtac gtcgggttcg agagcaaaca
    13141 gtccgctgct gtcgatcacc aggcaacctg agttggtcgc ttcttcaacc caggcagcgg
    13201 tagcttcttt gcctgcgaca aaaaatgcca gctgcgcctg cgtccagtcg aattcagcgg
    13261 catcctgcac ggtgattgtt ttaccaccaa agcgcagttg ttcgcctgcg ctttcgttac
    13321 gtgccagtgc ataaatttcc ccaaccggga actgacgttc agccagcgtt tcaagcaggg
    13381 cttcgcccac agcgccagtt gcgcccagga cggcaatgtt ccagccttca gacatggtgg
    13441 tttactccag aaatagcaaa gctccctgcc aatgttacag cagagagcat gaagaagaga
    13501 ttaacgtgcc ggatgatgaa cggcgttaaa acccagttta cacagcaatg atgccgcact
    13561 ggcgtcatca caaattacat acagagatga ccattcacgg cgctcaagat agtttttgcg
    13621 cagtttatcg aactcacccg gtatcccggc gactttacgc agcggtgcgt catcgcggcg
    13681 cacatcatac accaaatgca ccagcctttt cagcgtcggt tgatcgagcg ggccatgcag
    13741 cgtaatgcga ccaaactctg gcgcgggcag taatgtatcc agcgcaacgt gctgttcatg
    13801 cccaataaac ttgctatagg cttcaaacac ttgcgtagta ccgcgtgctt taccttccag
    13861 ggtataacct gcgatatgcg gcgtgccgat atccactttt gtcagcaact ccacgttaag
    13921 ttccggttcg ccttcccaga catccagcac tacgcttaac ttctggcctt cattcaggca
    13981 ggtcagcaac gcagtattat cgacgactgc gccacggcaa gcgttaatca gaatcgctcc
    14041 cggcttcagg ctacggatca gtttttcatc cgccagatgc agcgttttgt acggcccatc
    14101 tttgaagagt ggcgtatgga aagtcagaat atccgcatgc tgaactaatt catccagcga
    14161 gcggaaatca ccctcatccc cacggtcagc gcgaggcgga tcgcaaagca atgttttaat
    14221 ccctaacgct tccagtcgcg cctgcaatcg acgtccaacg ttaccaacgc ccacgatccc
    14281 caccgtacgg tcgtgcagtg aaaatccatc gcgttcggca agcatcagta gtgaggagaa
    14341 aacatattcc accaccgcaa tcgcattaca gccaggtgca gcggaaaaac caattcccgc
    14401 ctgcttcaac catgcttcat cgacatggtc ggtcccagca gtggcagtgc caacaaattt
    14461 aatgggtttt cctgccagca aagattcatt cactttcgtg accgaacgca ccatcagcgc
    14521 atccgcgtct gccagttgag cgacggggat tggacgcccg ggaaccgcgg tcacctcacc
    14581 caaacggcta aataagtcgc gggcataagg catattttca tcaacaagga ttttcacgtt
    14641 tgtgttacct gtatgagacg agagttaacc ggacaagtgt gccataatct cgcggccagg
    14701 catacttgcg aagatttcag gtataaggat acgtaatgat acaacctatt tccggccctc
    14761 ctcctgggca accaccaggt cagggagata acctgccgtc tggcgcgggc aatcagcctt
    14821 tatccagtca gcaacgtact tcgctggaaa gcttaatgac gaaagtgacc tcactgacgc
    14881 aacagcaaag agcagaactg tgggcgggta tcaggcacga tattggtctg tcgggagatt
    14941 caccgctgct ttcgcgtcac ttccctgccg ctgagcataa tctggcgcaa cgtctgctgg
    15001 ccgcgcaaaa aagccattct gcccgccagc ttttagcgca attaggggag tatttacgtc
    15061 tggggaataa tcgtcaggcg gtcacggatt atatccgtca taactttggt cagacgccgc
    15121 tgaatcagct ctcaccggag caattaaaaa ccattctcac cctattgcag gaagggaaga
    15181 tggttattcc gcaaccgcag cagcgcgagg cgaccgaccg tcctttatta ccggcggagc
    15241 acaatgcgct aaaacagctg gtgaccaaac ttacggcggc aacgggggaa cccagcaaac
    15301 agatctggca atcgatgctg gaactttccg gggtgaaaga tggcgagtta attccagcga
    15361 aactgtttaa ccatctggtg acctggctac aggcgcgtca gacgctaagc cagcaaaata
    15421 cgccgacgct ggaatcacta cagatggcgc taaaacaacc tttagatgcc agtgaactgg
    15481 cggcgttatc ggcatatatc cagcaaaaat atggcctttc tgcgcaatca tcgctttctt
    15541 ctgcccaggc cgaggatatt cttaatcagc tttatcaacg gcgggttaaa gggattgatc
    15601 cgcgtgatat gcaaccgctg cttaatcctt ttccaccgat gatggacacg ttgcaaaata
    15661 tggcaacgcg tcccgtgctg tggatactgt tagtcgcgat tatcctgatg ctggtctggc
    15721 tggttcgtta accccgacga aatgacagta tcgtgacaat aatacccagc accgcagaga
    15781 tcgccccggc aagaaatacc gaagagtaac caaacgtggt cgccagcatt cccgccagcg
    15841 gcccggagac gccgagggcg atatcctgaa acgcggcgta accgcccagt gcggtgccgc
    15901 gaacttgtga ggggacgcgt ttaaccacct ccacgcccag cgcaggaaag ataagcgaac
    15961 atccggctcc ggttaacgcc gcgcccgcta atgcgaccca tgcacctggg gcttgccaga
    16021 gcagcaacaa gcccaccgtt tctacaagca gagagacaat cgccactttc acgccgccaa
    16081 aacggtccgg catccagcca aacatgacgc gcatcacgac aaatgcgccg ccaaacgcgg
    16141 taagagtaaa gcccgccatc gcccatcctt tgctggcaaa gtagagcgaa acgaaagtcc
    16201 cgataaccgc aaaaccaacg ccttgtagtg ccagccctaa ccctggtttc cagataagcc
    16261 cgacaacgct ccacagcgat ggacgttctc ccgccagggc cggtactttg cgcactgtgc
    16321 cgttacaggc ccacgccagt aagggtaata ccattgtggt gatcgccagt gcggcaaaac
    16381 cgtaatggct atgaatcaac aggccaagcg gcgcaccaac agcgagggca ccgtaaatcg
    16441 ccattccgtt ccatgacatc actttgccag agtgttttgc ccctacgatg cctaatcccc
    16501 aggtcagagc gcctgtcagt aactggcttt caccaaagcc aagaatcaaa cgcccgacga
    16561 ccaacagggc aaatttcaac ggtgcggaga caggcaaaat cgccgccagc agcaacgcgc
    16621 cgccagccag accacaagct aacatcccct gaagcgccga acgttttgca ccatattgat
    16681 cggccagtcg cccggcatag ccacgcgtca gcaccgtagc cagaaactga atcccgacgg
    16741 caatcccgac catggtattg ccatagccca gatcatgatg aacaaacagc gggataaccg
    16801 gcaacggcag ccctacggtc atgtaggtga gaaaaaccgc aaaagcgatg cggaagagcg
    16861 aaaaattggc agaagatcgt gtttcggttt ggcttacagc agtcatgcat tactccagaa
    16921 tgcagcgcaa ggcgaggagt atccccgtct catctctctg gtttcagggt tacagtgcgt
    16981 tggcaggatt taacgcgtac gtcttttcag aaggaaatcg acaaagcggg aagtttgcct
    17041 ggaactggcg gcgattgtca atgatgtgaa aaagggaacc atcaggttcc cttttgcgtt
    17101 agtgccggag gccgcattgg cgcgtaacgt cggatgcgac gctggcgcgt cttatccgac
    17161 ctactccgac tactccgact actccgacct actgcgaatt aatctttcag cttgcgcatt
    17221 accagcgtgg cgttggtgcc gccgaagccg aagctgttag acataacggt ggtcagttcg
    17281 cgatcggtcg tttcggtcac gatgttcaga cctgccgcct gctcgtccag ctcttcaatg
    17341 ttgatgctcg gggcgataaa gccgtgttcc agcatcagca gagagtagat agcttcctgt
    17401 acgccagcag cgcccagaga gtgaccggtc atggctttgg ttgcagaaat cgccgggctc
    17461 ttatcgccga acacttcacg gatagctgcc agttctttca cgtcgccaac cggagtcgaa
    17521 gtaccatgag agttcaggta atcgattggg gtatcaacgc cgtgcatcgc catcttcatg
    17581 cagcgtactg cgccttcgcc agacggagca accatgtctg caccatcaga ggttgcgccg
    17641 tagccaacga tttcagcata gatgtgagca ccacgcgcca gcgcgtgttc cagctcttca
    17701 accactacca taccgccgcc gccagcgata acgaaaccgt cacggtgagc gtcgtaagta
    17761 cgggaggctt tttccggggt gtcgttgtat ttagtagaca gcgcacccat cgcgtcgaat
    17821 tcgcaggcca tttcccagca cagctcttcg ccgccgccag caaacacgat gtcctgtttg
    17881 cccagttgga tctgctctac tgcgttaccg atacagtgtg cggaagtcgc acacgcggag
    17941 ctgatggagt agttaacgcc atgaatttta aacggcgtgg cgaggcaggc agaaacgccg
    18001 gatgccatcg ctttggtgac cacatacggg ccaaccgctt tcaggccgcg cgggccgcgc
    18061 attgcgtcag cgccgaatac ctggaaacgc ggggaaccgc cgccagaacc tgcaatcagg
    18121 ccaacgcgtg ggttattctg gtaagcttcc ggagaaaggc ccgtatctgc gattgcctgc
    18181 tccatagaaa ggaatgcata aatggatgcg tcgctcataa agcgcacaac tttgcggtca
    18241 atgaggccag tggtatccag ttttacgttg ccccagacgt ggctacgcat gccggaatcc
    18301 ttcagctcct gagagaaagt gatccctgaa cgtccttcac gcagagatgc caggacttcc
    18361 tgctggttat taccgatgct ggaaacaatg cccaggccag taatcactgc acgtttcatt
    18421 caatacctct gtaagtcgca catagagtaa gtttcgaatg cacaatagcg tacacttgta
    18481 cgccgaacaa gtccgatcag ccatttaata gagaaatttg cgcagcctta cacacatcgc
    18541 taagatcgag ccaccgcctg taagacgagt aacttacgtg aaacactact ccatacaacc
    18601 tgccaacctc gaatttaatg ctgagggtac acctgtttcc cgagattttg acgatgtcta
    18661 tttttccaac gataacgggc tggaagagac gcgttatgtt tttctgggag gcaaccaatt
    18721 agaggtacgc tttcctgagc atccacatcc tctgtttgtg gtagcagaga gcggcttcgg
    18781 caccggatta aacttcctga cgctatggca ggcatttgat cagtttcgcg aagcgcatcc
    18841 gcaagcgcaa ttacaacgct tacatttcat tagttttgag aaatttcccc tcacccgtgc
    18901 ggatttagcc ttagcgcatc aacactggcc ggaactggct ccgtgggcag aacaacttca
    18961 ggcgcagtgg ccaatgccct tgcccggttg ccatcgttta ttgctcgatg aaggccgcgt
    19021 gacgctggat ttatggtttg gcgatattaa cgaactgacc agccaactgg acgattcgct
    19081 aaatcaaaaa gtagatgcct ggtttctgga cggctttgcg ccagcgaaaa acccggatat
    19141 gtggacgcaa aatctgttta acgccatggc aaggttggcg cgtccgggcg gcacgctggc
    19201 gacatttacg tctgccggtt ttgtccgccg cggtttgcag gacgccggat tcacgatgca
    19261 aaaacgtaag ggctttgggc gcaaacggga aatgctttgc ggggtgatgg aacagacatt
    19321 accgctcccc tgctccgcgc cgtggtttaa ccgcacgggc agcagcaaac gggaagcggc
    19381 gattatcggc ggtggtattg cctgcgcgtt gttgtcgctg gcgctattac ggcgcggctg
    19441 gcaggtaacg ctttattgcg cggatgaggc ccccgcactg ggtgcttccg gcaatcgcca
    19501 gggggcgctg tatccgttat taagcaaaca cgatgaggcg ctaaaccgct ttttctctaa
    19561 tgcgtttact tttgctcgtc ggttttacga ccaattaccc gttaaatttg atcatgactg
    19621 gtgcggcgtc acgcagttag gctgggatga gaaaagccag cataaaatca cacagatgtt
    19681 gtcaatggat ttacccgcag aactggctgt agccgttgag gcaaatgcgg ttgaacaaat
    19741 tacgggcgtt gcgacaaatt gcagcggcat tacttatccg caaggtggtt ggctgtgccc
    19801 agcagaactg acccgtaatg tgctggaact ggcgcaacag cagggtttgc agatttatta
    19861 tcaatatcag ttacagaatt tatcccgtaa ggatgactgt tggttgttga attttgcagg
    19921 agatcagcaa gcaacacaca gcgtagtggt actggcgaac gggcatcaaa tcagccgatt
    19981 cagccaaacg tcgactctcc cggtgtattc ggttgccggg caggtcagcc atattccgac
    20041 aacgccggaa ttggcagagc tgaagcaggt gctgtgctat gacggttatc tcacgccaca
    20101 aaatccggcg aatcaacatc attgtattgg tgccagttat catcgcggca gcgaagatac
    20161 ggcgtacagt gaggacgatc agcagcagaa tcgccagcgg ttgattgatt gtttcccgca
    20221 ggcacagtgg gcaaaagagg ttgatgtcag tgataaagag gcgcgctgcg gtgtgcgttg
    20281 tgccacccgc gatcatctgc caatggtagg caatgttccc gattatgagg caacactcgt
    20341 ggaatatgcg tcgttggcgg agcagaaaga tgaggcggta agcgcgccgg tttttgacga
    20401 tctctttatg tttgcggctt taggttctcg cggtttgtgt tctgccccgc tgtgtgccga
    20461 gattctggcg gcgcagatga gcgacgaacc gattccgatg gatgccagta cgctggcggc
    20521 gttaaacccg aatcggttat gggtgcggaa attgttgaag ggtaaagcgg ttaaggcggg
    20581 gtaatctgct ctcgcagtgt ttgccggatg cggcgtgaac gccttatccg acctacgtgt
    20641 gacgtgtagg cctgataaga cgcgataagc gtcgcatcag gcatggtgct ccagacgccg
    20701 caacttactg ctgtgacgcc tgctgaaaca ggttttccca catatcggtc accagcgcct
    20761 ggtcacgcgg cgacaattca ccggcaccaa tggctttttc cagactctgg ctaacggtcg
    20821 tatgcaccgc ctgagcggag tggtcatcac cactttccag ttctgcgatg gctaatgtca
    20881 ggtggccacg caaataccca ctggcaaaca actcatcatc actggcatgg tcaatcatgc
    20941 cgtcgattaa tgccagaatg cgtgattcaa actccgcgat catcttcttt cctcattgta
    21001 aaacgtggca ccggcttcag ttgagcgctt ccggccacgg gaactgttcc gccgtaagtt
    21061 ccagcgtgtg ataataattt tgtagtgctt taatgaagcg tgccggacgc tcgggaatgc
    21121 catttgtcag ataatccatc acctgcgcat gtacccgccg ttgaaacacc acacgatccg
    21181 gttctaagtc gccttccaga ttgtcgcaac tgacgttaaa cggatatccc gccgccacac
    21241 agaacaacca gtcgagtgcc tgcggcttca cttcaacacc ttcaaactgg ctttgcgttt
    21301 gggcatcacg cccatccggg caataccagt agccgaaatc aaccagctca cggcgcgctt
    21361 ttccggcaat acaccagtgc gaaatctcat gaattgcgct ggcataaaag ccgtgggcaa
    21421 agacaattcg gttatacggt acttccgcat cagcaggaag atagatcggt tcgtcgtcgc
    21481 ctttaatcag acgggtatta aattcatcgg caaagcagct attaaaaatt tcaatcaact
    21541 gctcatagtg gtgtgtactg ttcattagtt catccccaac cagtggagga tctcctgtcc
    21601 gtggctatcg taaagtaatt tggcactcat caccgccgag acgataacga tcatcgggcg
    21661 gatcagtttt tgtcctttgc tcagcaccag tcttgaaccc atgcgcgcgc cgaggaactg
    21721 ccccaccagc atgacaaagc ccgtcgccca aatcactttg ccgccgagaa taaacagcag
    21781 cagaccgcca atgtttgacg ttgcgttgag taatttggcg tgagccgtgg ctttggcgag
    21841 gttgaatccg cacagcgtaa cgaaggccag cgcgtaaaac gatccggcag ccgggccaaa
    21901 gaatccgtca taaaaaccga cgcagccacc ggcaattaac gcgaagggta aaccgtacat
    21961 ccggcgctgg cgatcttctt cacccagctt tggcatcagc aagaaataga ggccgataca
    22021 aattaccaga atgggcaaaa tctgccgtaa gacatcagcc tgaacgtatt gcaccagcag
    22081 tgcgccgctc attgagccga caaaggtcat ggcgatattg agtttctgat cgcttaaact
    22141 aaccactttg cggcgaataa agtagatagt ggcggaaata gagccgccgc aggcttgcag
    22201 tttattggtt gccagcgcgt tagcgggaga cattcccgca gccatcaatg ccggaatggt
    22261 gagtaaccca ccgccaccgg caatcgagtc gataaatccc gccagcatgg cgacaaaaaa
    22321 gagaactccc agcaacagcg gggaaaccat aaacaggcta ttaaacgttt ccattagatc
    22381 acgtgctcat ccagtagcgc ctggcaggaa ggcggcaacg gaggcggtgt cttcttctca
    22441 ggctttgttg ttcctggttt tggaggtgca aaccagcttt gcagttctgc cccgcaacca
    22501 tcgcctggtg gcggtaaagg ttgatcttca cactccagac tatcggcagg gcaacgtaat
    22561 cgtacatgca tatgcgcgcg atgctggaac cagggtcgca ctttgcgcaa ccagtcgcga
    22621 tcggtgcccg catcaaggca aagttgttgt ttaatcgccg gattaacaaa aatgcgcgtg
    22681 acgtctttgt cctgggcggc gagtttgatc aagctgaaaa tttctggctt ccacagcgtg
    22741 gagacaacgt gtttaccgtc gcgggaaact aagtccagtg cttgcgggcg caagagctgc
    22801 gcggaggtcc agcgagtttt cggcagttgc agaaagatat cgacatccag tccggtctgg
    22861 tggctggcat gaccgccgtt gaaacgccca ccagcgggca tccccatatc gccaatcagc
    22921 accgtaccca tgcccagatt gctcacctgg ctactcagac gctggataaa catcaccaga
    22981 tccgggtgac cgaaatagcg acgctgatcg gtacgcatga cctgataatg ttcggactgt
    23041 atcggcaacg tgtcagcgcc gacaatacag ccattagaaa aactgcctat cgattgtgcg
    23101 ctacccggca caggttgggt tattttttgc cacggcgtcg ctgccaagct agcgctactg
    23161 gcaagcagag ccagcagcgc aatcgcggtt ttgttcattt tttaccagcg tggaatatca
    23221 gtcttcacat cggcattttg cgcccgctgc cgtaacaggt gatccattaa aacgatcgcc
    23281 agcatcgctt cagcgatcgg cactgcacgg atcccgacac agggatcgtg acggcctttg
    23341 gtgatcatct caacttcttc gccaaagcgg ttaatagtgc gccccggcac ggtaatgctg
    23401 gaggtcggtt tcagcgccat atgagcaatg atttgctgcc cgctgctgat accgccgaga
    23461 atgccgcccg catggttgct ctggaaaccg tctttggtga tttcgtcgcg gttctggctg
    23521 ccgcgcagcg ccactacgtc aaagccgtcg ccaatttcca cgcctttcac cgcgttgatg
    23581 ctcatcagcg catgggcgat gtcggcatcc aggcggtcaa ataccggctc gccaagtccg
    23641 gcggggacgc cactggcaac aacggtgact ttcgcgccga tggagtcgcc ctcttttttc
    23701 agcgcgcgca tcagttcatc taacgcgtcg attttgtccg gatccgggca gaagaacgga
    23761 ttttgttcaa ccagcgacca gtctttgatt tccagcggaa tgtcgcccat ctgggtcaag
    23821 cagccgcgga tttcaatacc aaatttctcg gcgagatatt ttttggcaat cgcccctgcc
    23881 gccacgcgca tggcagtttc gcgggcggaa gaacgtccac cgccgcgata atcgcgcaga
    23941 ccgtattttt gttcgtaggt gtaatcagca tggcctgggc ggaaaacgtc tttaattgcg
    24001 ctgtaatcct gagagcgctg gtcagtgttt tcgatcaaca agccaatgct ggtgccagta
    24061 gtaacgcctt caaaaacacc ggagagaatt ttgacctgat ccggctcgcg gcgctgggtg
    24121 gtatagcgcg atgtcccagg gcgacgacgg tcgaggtcat gttgcaggtc cgcttccgtc
    24181 agcagaatgc ctggcggaac accatcgacg atgcagccga gcgccagccc atgcgattcg
    24241 ccgaaggtgg ttacgcgaaa gagttgtcca attgtgtttc cagccatcac ggctccgtta
    24301 ttgttgtgtt tgcgtgttta cttaatcttt ataaatcgcg aaatattcac gggccgccag
    24361 cagctgctct ttggtgagca taaacacacc atcgccgccg ttatcaaact ccagccaggt
    24421 gaacggaaca tccggatatt gttccataag atgtaccatg ctgttgccga cttcacaaat
    24481 caacacgcca tcatcagcaa ggtaatctgc cgcgtttcca agaatgcgac gcgtcagttt
    24541 aaggccgtcg gtgccagatg ccaggcccag ttccggctcg tgacggtatt cgtttggcag
    24601 gtcggacata tcttccgcgt cgacatacgg cgggttagtg acaatcagat cgtactgcac
    24661 tttcggcaag tcgcggaaca gatcggaacg aatcggaatg acgttgtgga tcagaccgtg
    24721 ttcttcgatg ttctgttcag caaccgccag cgcgtcggga gagatatcca ccgcgtcgac
    24781 ttctgcatcc gggaaggcat aagcacaggc aatggcgatg cagccgctac cggtacacat
    24841 atctaaaata tgctgcggtt gtttgctgat gagtccggca aatttattgt tgatcagttc
    24901 accaatcggc gagcgcggca ccagcacgcg ttcatcgacg taaaattcat gaccgcagaa
    24961 ccaggctttg ttggtcaggt aagccaccgg aatgcgctcg ttgacgcggc ggatcacgcg
    25021 ttcaacaata cgatgttttt cgctggaggt cagacgcgcg gtgcgcatat cttccgggat
    25081 atccagcggc aggtagagcg atggtaacac cagctgtacg gcttcatccc acgggttatc
    25141 ggtgccgtga ccgtaccaga tatttgccgc gctgaagcgg ctcactgacc agcgcaacat
    25201 gtcctgaatg gtttgcagct catttactgc ttcatcaacg aaaattttat ccacgtattc
    25261 ctccagggca tgatcgcaat aatttcggcg gctagtttgc catgaagatg acgataaatc
    25321 agcattcacg cgcggtgagt gaggaaaaat acgtttaaaa cgatcgattg tgctacgagt
    25381 cgggtaaact gtaggaaaat tagaaataga gacagataaa tgaaaaagaa aacaacactt
    25441 agcgaggagg accaggctct gtttcgccag ttgatggcgg ggactcgcaa gattaagcag
    25501 gacacgattg tccaccgacc gcagcgtaaa aaaatcagcg aagtgccggt gaaacgcttg
    25561 atccaggagc aggctgatgc cagccattat ttctccgatg agtttcagcc gttattaaat
    25621 accgaaggtc cggtgaaata tgttcgcccg gatgtcagcc atttcgaggc gaagaaactg
    25681 cgccgcggcg attattcacc ggaattgttt ttggatttac acggtctgac gcagctgcag
    25741 gccaagcagg aactgggcgc gttgattgcc gcctgtcgcc gcgaacatgt gttttgtgcc
    25801 tgcgtgatgc atgggcacgg gaagcatatt ttgaagcaac aaacaccgct gtggctggca
    25861 caacatccgc atgtgatggc atttcaccag gcaccgaaag agtacggcgg tgatgcggct
    25921 ttgttggtgt tgattgaagt ggaagagtgg ttgccgccgg agttgccctg aggagttgag
    25981 cgtgttgtgg caggagcgaa tgaccctgcc aggtgagaaa aggtgcgcta atacatattc
    26041 agtatgtaag tgaatcggca ggtagaatct atgggctgtc gagatgtcgt gtccacgcgt
    26101 agcttcatat catgcagttg cctggacgta atcggttgcg gctcaggcgt caccgtcact
    26161 ttggcattat cacagccgga agtcgagaag gtcatctgct gtgcgataaa acggcagtag
    26221 acaccacgct catcaaaatt attcccgtta cacagtttgc cattttccat caggaaagtg
    26281 ggcagtgttt gctcaataac accacctgtt gactgcaacc tgacgacttt gttatgtaca
    26341 acataatttt cattccagga aacatcatac gatgccaggg gcaccgccgg acatgaagaa
    26401 ctcaccttcg ttgggccaat atagtcagga aaatcatcat catacgtttt agcgaaggga
    26461 tctctactct taacaaacga cgacacaatc cacggacaac catgtaaatt cccatcgtaa
    26521 taaacaaaca tctttaattc attacatgtc catcccgttt tggtctggct atcatactgc
    26581 tctaatccag gacaggctga catggatacc ctgctgtccg aaattttcga catagatggt
    26641 tgagtagaac tatcgccagt ccacgaaact aaatccggct gtgaattggg catgaatgta
    26701 gccttaaata tagcgtaatt aactgaatct ggcgtcgcta taatcagatg aaactcaaac
    26761 tctgtagact ggccccctga atctccagac aaccagtatc acttaaa
//
LOCUS       DADMHM010000040        25638 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.041, whole genome shotgun sequence.
ACCESSION   DADMHM010000040 DADMHM010000000
VERSION     DADMHM010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25638)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25638)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25638
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.041"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(76..696)
                     /gene="entD"
                     /locus_tag="JN125_001447"
     CDS             complement(76..696)
                     /gene="entD"
                     /locus_tag="JN125_001447"
                     /EC_number="6.3.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415115.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin synthase subunit EntD"
                     /protein_id="HAY8871276.1"
                     /translation="MKTTHTSLPFAGHTLHFVEFDPANFCEQDLLWLPHYAQLQHAGR
                     KRKAEHLAGRIAAIYALREYGYKCVPAIGELRQPVWPAEVYGSISHCGATALAVVSRQ
                     PIGVDIEEIFSAQTATELTDNIITPAEHERLADCGLAFSLALTLAFSAKESAFKASEI
                     QTDAGFLDYQIISWNKQQVIIHRENEMFAVHWQIKEKIAITLCQHD"
     gene            complement(866..3106)
                     /gene="fepA"
                     /locus_tag="JN125_001448"
     CDS             complement(866..3106)
                     /gene="fepA"
                     /locus_tag="JN125_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore enterobactin receptor FepA"
                     /protein_id="HAY8871277.1"
                     /translation="MNKKIHSLALLVNLGIYGVAQAQEPTDTPVSHDDTIVVTAAEQN
                     LQAPGVSTITADEIRKNPVARDVSEIIRTMPGVNLTGNSTSGQRGNNRQIDIRGIGPE
                     NTLILIDGKPVSSRNSVRQGWRGERDTRGDTSWVPPEMIERIEVLRGPAAARYGNGAA
                     GGVVNIITKKGSGEWHGSWDAYFNAPEHKEEGATKRTNFSLTGPLGDEFSFRLYGNLD
                     KTQADAWDINQDHQSARAGTYATTLPAGREGVINKDINGVVRWDFAPLQSLELEAGYS
                     RQGNLYAGDTQNTNSDAYTRSKYGDETNRLYRQNYSLTWNGGWDNGVTTSNWVQYEHT
                     RNSRIPEGLAGGTEGKFNEKATQDFVDIDLDDVMLHSEVNLPIDFLVNQTLTLGTEWN
                     QQRMKDLSSNTQALTGANTGGAIDGVSATDRSPYSKAEIFSLFAENNMELTDSTIVTP
                     GLRFDHHSIVGNNWSPALNISQGLGDDFTLKMGIARAYKAPSLYQTNPNYILYSKGQG
                     CYASAGGCYLQGNDDLKAETSINKEIGLEFKRDGWLAGVTWFRNDYRNKIEAGYVAVG
                     QNAVGTDLYQWDNVPKAVVEGLEGSLNVPVSETVMWTNNITYMLKSENKTTGDRLSII
                     PEYTLNSTLSWQAREDLSMQTTFTWYGKQQPKKYNYKGQPAVGPETKEISPYSIVGLS
                     ATWDVTKNVSLTGGVDNLFDKRLWRAGNAQTTGDLAGANYIAGAGAYTYNEPGRTWYM
                     SVNTHF"
     gene            3349..4551
                     /gene="fes"
                     /locus_tag="JN125_001449"
     CDS             3349..4551
                     /gene="fes"
                     /locus_tag="JN125_001449"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterochelin esterase"
                     /protein_id="HAY8871278.1"
                     /translation="MTALKVGSESWWQSKHGPEWQRLNDEMFEVTFWWRDPQGSEEYS
                     PIKRVWVYITGVTDHHQNSQPQSMQRIAGTDVWQWTTQLNANWRGSYCFIPTERDDIF
                     SAPSPDRLELREGWRKLLPQAIADPLNPQSWKGGRGHAVSALEMPQAPLQPGWDCPQA
                     PEIPAKEIIWKSERLKNSRRVWIFTTGDATAEERPLAVLLDGEFWAQSMPVWPVLTSL
                     THRQQLPPAVYVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKAIAPFSDRADRTV
                     VAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRGGQQEGVLLEKLKAGEVSAEG
                     LRIVLEAGIREPMIMRANQALYAQLHPIKESIFWRQVDGGHDALCWRGGLMQGLIDLW
                     QPLFHDRS"
     gene            4554..4772
                     /locus_tag="JN125_001450"
     CDS             4554..4772
                     /locus_tag="JN125_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbtH family protein"
                     /protein_id="HAY8871279.1"
                     /translation="MAFSNPFDDPQGAFYILRNAQGQFSLWPQQCALPAGWDIVCQPQ
                     SQESCQQWLEAHWRTLTPANFTQLQEAQ"
     gene            4769..8650
                     /gene="entF"
                     /locus_tag="JN125_001451"
     CDS             4769..8650
                     /gene="entF"
                     /locus_tag="JN125_001451"
                     /EC_number="6.3.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin non-ribosomal peptide synthetase
                     EntF"
                     /protein_id="HAY8871280.1"
                     /translation="MSQHLPLVAAQPGIWMAEKLSDLPSAWSVAHYVELTGEVDAPLL
                     ARAVVDGLAQADTLRMRFTEDNGEVWQWVDDALTFELPEIIDLRTNIDPHGTAQALMQ
                     ADLQQDLRVDSGKPLVFHQLIQVADNRWYWYQRYHHLLVDGFSFPAITRQIANIYCTW
                     LRGEPTPASPFTPFADVVEEYQQYRESEAWQRDAAFWAEQRRQLPPPASLSPAPLPGR
                     SASADILRLKMEFTDGEFRQLATQLSGVQRTDLALALTALWLGRLCNRMDYAAGFIFM
                     RRLGSAALTATGPVLNVLPLGIHIAAQETLPELATRLAAQLKKMRRHQRYDAEQIVRD
                     SGRAAGDEPLFGPVLNIKVFDYQLDIPGVQAQTHTLATGPVNDLELALFPDEHGDLSI
                     EILANKQRYDEPTLIQHAERLKMLIAQFAADPALLCGDVDIMLPGEYAQLAQINATQV
                     EIPETTLSALVAEQAAKTPDAPALADARYQFSYREMREQVVALANLLRERGVKPGDSV
                     AVALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTDDQLPRF
                     ADVPDLTNLCYNAPLKPQGSAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRL
                     LWMQNHYLLTGEDVVAQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQQFF
                     AEYGVTTTHFVPSMLAAFVASLTPQTARQSCATLKQVFCSGEALPADLCREWQQLTSV
                     PLHNLYGPTEAAVDVSWYPAFGEELAQVRGSSVPIGYPVWNTDLRILDAMMHPVPPGV
                     AGDLYLTGIQLAQGYLGRPDLTASRFIADPFVPGERMYRTGDVARWLDNGAVEYLGRS
                     DDQLKIRGQRIKLGEIDRVMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQSG
                     LPLDTSALQAQLRETLPPHMVPVVLLQLPLLPLSANGKLDRKALPLPELKAQAPGRAP
                     KAGSETIIAAAFASLLGCEVQDADADFFALGGHSLLAMKLAAQLSRQVARQVTPGQVM
                     VASTVAKLATIIDAEEDSTRRMGFETILPLREGNGPTLFCFHPASGFAWQFSVLSRYI
                     DPQWSIIGIQSPRPNGPMHTAANLDEVCEAHLATLLEQQPHGPYYLLGYSLGGTLAQG
                     IAARLRARGEQVAFLGLLDTWPPETQNWQEKEANGLDPEVLAEINREREAFLAAQQGS
                     TSTELFTTIEGNYADAVRLLTTAHSVPFDGKATLFVAERTLQEGMSPERAWSPWIAEL
                     DIYRQDCAHVDIISPGAFVKIGPIIRATLNR"
     gene            8866..9999
                     /gene="fepE"
                     /locus_tag="JN125_001452"
     CDS             8866..9999
                     /gene="fepE"
                     /locus_tag="JN125_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS O-antigen length regulator"
                     /protein_id="HAY8871281.1"
                     /translation="MSSLNIKQGSDAHFSEYPLASPSSNEIDLLNLIEVLWRAKKTVM
                     AVVFAFACAGLLISFILPQKWTSSAVITPAEAIQWQDLEKTFTKLRVLDLDVNIDRGG
                     AFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHRAIVALSEKMKAVDDNAS
                     KKKDEPSLYTSWTLSFTAPTSKEAQTVLSGYIDYISALVVKESIENIRNKLEIKTQFE
                     KEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKPVYSNGQAVKDDPDFSISLGAD
                     GIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKANVNDVNFTPFKYQLSPSLPVKKD
                     GPGKAIIVILSALIGGMVACGSVLLRYAMASRKQDAMMADHLV"
     gene            complement(9996..10811)
                     /gene="fepC"
                     /locus_tag="JN125_001453"
     CDS             complement(9996..10811)
                     /gene="fepC"
                     /locus_tag="JN125_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-enterobactin ABC transporter ATP-binding
                     protein"
                     /protein_id="HAY8871282.1"
                     /translation="MTESVARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGC
                     GKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELV
                     ARGRYPHQPLFTHWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ
                     ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALR
                     EGKIVAQGAPKEIVTAELIERIYGLRCMIIDDPVAGTPLVVPLERTAPSTANS"
     gene            complement(10808..11800)
                     /gene="fepG"
                     /locus_tag="JN125_001454"
     CDS             complement(10808..11800)
                     /gene="fepG"
                     /locus_tag="JN125_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-enterobactin ABC transporter permease"
                     /protein_id="HAY8871283.1"
                     /translation="MIYVSRRLLITCLLLISACVVAGIWGLRSGAVTLETSQVFAALM
                     GDAPRSMTMVVTEWRLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWS
                     GVLVAMVLFGQDLTAIALAAMVGGIVTSLLVWLLAWRNGIDTFRLIIIGIGVRAMLVA
                     FNTWLLLKASLETALTAGLWNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLE
                     MGDDTACALGVSVERSRLLMMLVAVVLTAAATALAGPISFIALVAPHIARRISGTARW
                     GLTQAALCGALLLLAADLCAQQLFMPYQLPVGVVTVSLGGIYLIVLLIQESRKK"
     gene            complement(11797..12801)
                     /gene="fepD"
                     /locus_tag="JN125_001455"
     CDS             complement(11797..12801)
                     /gene="fepD"
                     /locus_tag="JN125_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+)-siderophore ABC transporter permease"
                     /protein_id="HAY8871284.1"
                     /translation="MSGSVAVTRAIAVPGLLLLLIIATALSLLIGAKSLPASVVLEAF
                     SGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVNAGAS
                     FAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGGQLSPVRLTLAGVALAA
                     VLEGLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALN
                     SLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAVVGPIAFIGLMMPHMARWLVGA
                     DHRWSLPVTLLATPALLLFADIIGRVIVPGELRVSVVSAFIGAPVLIFLVRRKTRGGA
                     "
     gene            12912..14162
                     /gene="entS"
                     /locus_tag="JN125_001456"
     CDS             12912..14162
                     /gene="entS"
                     /locus_tag="JN125_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin transporter EntS"
                     /protein_id="HAY8871285.1"
                     /translation="MNKQSWLLNLSLLKTHPAFRAVFLARFISIVSLGLLGVAVPVQI
                     QMMTHSTWQVGLSVTLTGGAMFVGLMVGGVLADRYERKKVILLARGTCGIGFIGLCLN
                     ALLPEPSLLAIYLLGLWDGFFASLGVTALLAATPALVGRENLMQAGALTMLTVRLGSV
                     ISPMIGGLLLATGGVAWNYGLAAAGTFITLLPLLSLPALPPPPQPREHPLKSLLAGFR
                     FLLASPLVGGIALLGGLLTMASAVRVLYPALADNWQMSAAEIGFLYAAIPLGAAIGAL
                     TSGKLAHSARPGLLMLLSTLGSFLAIGLFGLMPMWILGVVCLALFGWLSAVSSLLQYT
                     MLQTQTPEAMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGV
                     LLLLVLVELRRFRQTPPQVTASDS"
     gene            complement(14166..15122)
                     /gene="fepB"
                     /locus_tag="JN125_001457"
     CDS             complement(14166..15122)
                     /gene="fepB"
                     /locus_tag="JN125_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe2+-enterobactin ABC transporter
                     substrate-binding protein"
                     /protein_id="HAY8871286.1"
                     /translation="MRLAPLYRNALLLTGLLLSGIAAVQAADWPRQITDSRGTHTLES
                     QPQRIVSTSVTLTGSLLAIDAPVIASGATTPNNRVADDQGFLRQWSKVAKERKLQRLY
                     IGEPSAEAVAAQMPDLILISATGGDSALALYDQLSTIAPTLIINYDDKSWQSLLTQLG
                     EITGHEKQAAERIAQFDKQLAAAKEQIKLPPQPVTAIVYTAAAHSANLWTPESAQGQM
                     LEQLGFTLAKLPTGLNASQSQGKRHDIIQLGGENLAAGLNGESLFLFAGDQKDADAIY
                     ANPLLAHLPAVQNKQVYALGTETFRLDYYSAMQVLERLKALF"
     gene            15497..16672
                     /gene="entC"
                     /locus_tag="JN125_001458"
     CDS             15497..16672
                     /gene="entC"
                     /locus_tag="JN125_001458"
                     /EC_number="5.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase EntC"
                     /protein_id="HAY8871287.1"
                     /translation="MDTSLAEEVQQTMATLAPNRFFFMSPYRSFTTSGCFARFDEPAV
                     NGDSPDSPFQQKLAALFADAKVQGIKNPVMVGAIPFDPRQPSSLYIPESWQSFSRQEK
                     QASARRFTRSQSLNVVERQAIPEQTTFEQMVARAAALTATPQVDKVVLSRLIDITTDA
                     AIDSGVLLERLIAQNPVSYNFHVPLADGGVLLGASPELLLRKDGERFSSIPLAGSARR
                     QPDEVLDREAGNRLLASEKDRHEHELVTQAMKEVLRERSSELHVPSSPQLITTPTLWH
                     LATPFEGKANSQENALTLACLLHPTPALSGFPHQAATQVIAELEPFDRELFGGIVGWC
                     DSEGNGEWVVTIRCAKLRENQVRLFAGAGIVPASSPLGEWRETGVKLSTMLNVFGLH"
     gene            16682..18292
                     /gene="entE"
                     /locus_tag="JN125_001459"
     CDS             16682..18292
                     /gene="entE"
                     /locus_tag="JN125_001459"
                     /EC_number="2.7.7.58"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(2,3-dihydroxybenzoyl)adenylate synthase"
                     /protein_id="HAY8871288.1"
                     /translation="MSIPFTRWPEEFARRYREKGYWQDLPLTDILTRHAASDSIAVID
                     GELQLSYRELNQAADNLACTLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVL
                     ALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLHNDSGE
                     HNLQDAINHPADGFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC
                     QFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVT
                     ALVPPAVSLWLQALAEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGM
                     AEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFR
                     GYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENL
                     LLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPLRAVQVRRFLREQGIAEFKLPDRVE
                     CVDSLPLTAVGKVDKKQLSQWLASRASA"
     gene            18306..19163
                     /gene="entB"
                     /locus_tag="JN125_001460"
     CDS             18306..19163
                     /gene="entB"
                     /locus_tag="JN125_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterobactin biosynthesis bifunctional
                     isochorismatase/aryl carrier protein EntB"
                     /protein_id="HAY8871289.1"
                     /translation="MAIPKLQAYALPESHDIPQNKVDWAFELQRAALLIHDMQDYFVS
                     FWGENCPMMEQVIANIAALRDYCKQHNIPVYYTVQPKEQSDEDRALLNDMWGPGLTRS
                     PEQQKVVDRLTPDADDTVLVKWRYSAFHRSPLEQMLKESGRNQLIITGVYAHIGCMTT
                     ATDAFMRDIKPFMVADALADFSRDEHLMSLKYVAGRSGRVVMTEELLPAPVPASKAAL
                     REVILPLLDESDEPFDDDNLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKKPTIDAW
                     WKLLSREVK"
     gene            19163..19909
                     /gene="dhbA"
                     /locus_tag="JN125_001461"
     CDS             19163..19909
                     /gene="dhbA"
                     /locus_tag="JN125_001461"
                     /EC_number="1.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706451.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase"
                     /protein_id="HAY8871290.1"
                     /translation="MDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQY
                     PFATEVMDVADAGQVAQVCQRLLAETERLDVLINAAGILRMGATDQLSKEDWQQTFAV
                     NVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSVGL
                     ELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEI
                     ANTILFLASDLASHITLQDIVVDGGSTLGA"
     gene            19912..20325
                     /gene="entH"
                     /locus_tag="JN125_001462"
     CDS             19912..20325
                     /gene="entH"
                     /locus_tag="JN125_001462"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proofreading thioesterase EntH"
                     /protein_id="HAY8871291.1"
                     /translation="MIWKRHLTLDELNATSDNTMVAHLGIVYTRLGDDVLEAEMPVDT
                     RTHQPFGLLHGGASAALAETLGSMAGFMMTRDGQCVVGTELNATHHRPVSEGKVRGVC
                     QPLHLGRQNQSWEIVVFDEQGRRCCTCRLGTAVLG"
     gene            20506..22611
                     /gene="cstA"
                     /locus_tag="JN125_001463"
     CDS             20506..22611
                     /gene="cstA"
                     /locus_tag="JN125_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein CstA"
                     /protein_id="HAY8871292.1"
                     /translation="MNKSGKYLVWTVLSVMGAFALGYIALNRGEQINALWIVVASVCI
                     YLIAYRFYGLYIAKNVLAVDPKRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPL
                     VGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAG
                     VIALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLALFMGIYLRYLRLGRI
                     GEVSVIGLVFLIFAIISGGRVAESPTWAPYFDFTGVQLTWMLVGYGFVAAVLPVWLLL
                     APRDYLSTFLKIGTIVGLAVGILIMRPTLTMPALTKFVDGTGPVWTGNLFPFLFITIA
                     CGAVSGFHALISSGTTPKMLANEGQACFIGYGGMLMESFVAIMALVSACIIDPGVYFA
                     MNSPMAVLAPAGTADVVASVAQVVSSWGFSITPDTLNQIASEVGEQSIISRAGGAPTL
                     AVGMAYILHGALGGMMDVAFWYHFAILFEALFILTAVDAGTRAARFMLQDLLGVVSPG
                     LKRTDSLPANLLATALCVLAWGYFLHQGVVDPLGGINTLWPLFGIANQMLAGMALMLC
                     AVVLFKMKRQRYAWAALVPTAWLLICTLTAGWQKAFSPDAKVGFLAIANKFQAMIDSG
                     NIPSQYTESQLAQLVFNNRLDAGLTIFFMVVVVVLALFSIKTALAALKDPKPTAKETP
                     YEPMPENVEEIVAQAKGAH"
     gene            22793..22990
                     /locus_tag="JN125_001464"
     CDS             22793..22990
                     /locus_tag="JN125_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbdD/YjiX family protein"
                     /protein_id="HAY8871293.1"
                     /translation="MFDSLAKAGKYLGQAAKLMIGMPDYDNYVEHMRVNHPDQTPMTY
                     EEFFRERQDARYGGKGGARCC"
     gene            complement(23000..24088)
                     /gene="hcxA"
                     /locus_tag="JN125_001465"
     CDS             complement(23000..24088)
                     /gene="hcxA"
                     /locus_tag="JN125_001465"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxycarboxylate dehydrogenase HcxA"
                     /protein_id="HAY8871294.1"
                     /translation="MPHNPIRVVVGPANYFSHPRSFNHLNDFFTDEQLSRAVWIYGKR
                     AIAVAQTKLPPAFGLPGAKHILFRGHCSESDVQQLAAESGDDRSVVIGVGGGALLDTA
                     KALARRLGLPFVAVPTIAATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIIL
                     NAPQQYLLAGIGDTLAKWYEAVVLAPQPETLPLTVRLGINNAQAIHDVLLNSSEQALA
                     DQQNQQLTQSFCDVVDAIIAGGGMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGT
                     KVAYGILVQSALLGQDDVLAQLTGAYQRFHLPTTLAELEVDINNQAEIDKVIAHTLRP
                     VESIHYLPVTLTPDTLRAAFEKVESFKA"
     gene            24197..25346
                     /gene="ybdL"
                     /locus_tag="JN125_001466"
                     /pseudo
     CDS             24197..25346
                     /gene="ybdL"
                     /locus_tag="JN125_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308666.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-oxo-acid transaminase"
     gene            complement(25347..>25638)
                     /locus_tag="JN125_001467"
     CDS             complement(25347..>25638)
                     /locus_tag="JN125_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HAY8871295.1"
                     /translation="SSSLKLRLKGYLPVTCLEGTRNQRIAATIRHNRARGRHQITAMS
                     EIVRELSQLGWDDNKIGKELGMDSDEVLRLKQINGLQELFADRQYSRAWTVK"
BASE COUNT         5619 a         6730 c         7253 g         6036 t
ORIGIN      
        1 gtggtaaggc acctgcttta cactttcgcc cgcggtcagt gatggctgcg ggcgaatcgt
       61 accagatgtt gtcaattaat cgtgttggca cagagttatg gctatttttt cttttatctg
      121 ccagtgcaca gcaaacatct cattctcacg atgaatgatg acctgctgtt tattccagct
      181 aattatctga tagtccagaa aacctgcatc agtttggatc tcacttgcct taaatgcgct
      241 ctctttggcg gaaaatgcca gtgtcagcgc cagagaaaag gctaaaccgc agtctgcgag
      301 tcgctcgtgt tctgctggtg taataatgtt gtctgtcaat tcggtcgctg tttgcgcaga
      361 aaaaatttct tcgatatcaa cgccaatcgg ttgacgggaa accacggcca atgccgtagc
      421 cccgcagtgg ctaatactgc cgtatacctc cgcaggccac accggttggc gtagctcgcc
      481 gattgcgggc acacatttat agccatattc ccgcagcgca taaattgcag cgatccgccc
      541 ggctaaatgt tcggctttgc gcttccgtcc agcgtgttgc agttgcgcgt aatgcggcag
      601 ccagagtaaa tcctgctcac aaaaattcgc cggatcgaac tcaacaaaat gcagcgtatg
      661 tccggcaaag gggagggagg tatgcgtagt tttcatgtcg accatattag agactgatga
      721 caaacgctaa actgcctgat gcgctacgct tatcaggcct acatggtcct gcaatatatt
      781 gaattggcaa gatttttgta ggccggataa gcgtagcgca tccggcatga acgacgcgca
      841 ctttgtcaac aatctgacgt tagcatcaga agtgagtgtt tacgctcatg taccacgtac
      901 gtcccggctc gttataggta tacgccccgg cacccgcgat atagttggcc cctgccagat
      961 cgcccgtggt ctgggcatta cccgcacgcc acaaacgttt gtcgaacagg ttgtccacgc
     1021 cgccggtcag actgacattc ttcgtcacat cccaggtcgc gctcagaccc acaatgctgt
     1081 aaggactgat ttctttggtt tccgggccaa ccgctggctg acctttgtag ttgtattttt
     1141 tcggctgctg cttaccgtac caggtgaagg tcgtttgcat cgacaaatct tcccgcgcct
     1201 gccagctcag cgttgagttc aacgtgtact ccgggatgat cgacaaacgg tcgcccgtgg
     1261 ttttgttttc actcttcagc atataagtga tgttattggt ccacatcacc gtttcgctaa
     1321 ctggtacgtt taacgatcct tccagacctt caaccactgc tttcggcacg ttatcccact
     1381 gatagagatc ggtgccgact gcgttttgcc ctacagccac atagcccgct tcaatcttat
     1441 tgcgataatc gttacggaac caggtgacgc ccgccagcca gccgtcgcgt ttgaactcca
     1501 gaccaatctc tttgttgatg ctggtttctg ctttcaggtc atcgttacct tgcagatagc
     1561 agccgcccgc gctggcatag cagccctgac ctttactgta gagaatgtag ttcgggttag
     1621 tctggtacag gctcggcgct ttataggcgc gggcaatgcc cattttcagc gtgaagtcat
     1681 cgcctaaacc ttgcgatatg ttcagcgccg ggctccagtt attgccgaca atactgtgat
     1741 gatcgaaacg cagccccggc gttacgatgg tgctgtcagt cagctccatg ttgttttcgg
     1801 caaatagcga gaaaatttct gcttttgaat acgggctacg gtcggtggca ctcacaccat
     1861 caatagcgcc gccggtgttc gccccggtca gcgcctgggt attggaactc aagtccttca
     1921 tccgttgctg attccactcc gtacccagcg tcagcgtttg gttaacgagg aaatcaatcg
     1981 gcaggttaac ttcgctgtgc agcatcacgt catcaagatc gatatcgacg aaatcctgtg
     2041 tcgctttttc gttaaatttc ccttcggtac cgcccgccag accttccgga atacgcgagt
     2101 tacgggtgtg ttcatactgc acccagttgc tggtggtcac tccgttatcc cagccaccgt
     2161 tccaggtcag cgagtagttc tggcgataca ggcggttggt ttcatcgcca tatttcgagc
     2221 gagtgtaagc gtcagagttg gtgttctggg tatcgcccgc atacaggtta ccctggcggc
     2281 tgtaacccgc ttccagttcg agtgattgca gaggcgcgaa gtcccagcgc accacgccat
     2341 taatatcttt gttgatcacc ccttcgcgcc cggctggtaa cgtcgtggca tacgttccgg
     2401 cacgcgcgga ctgatggtcc tggttgatat cccacgcgtc agcctgggtt ttgtcgaggt
     2461 tgccatacaa gcggaagctg aattcgtcgc ccagcgggcc ggtcagactg aagttggtgc
     2521 gtttagtggc accttcctct ttatgttctg gcgcattgaa ataagcgtcc caggaaccgt
     2581 gccactcacc gctgcctttt ttggtaatga tgttaactac gccacccgcc gcgccgttgc
     2641 cataacgcgc tgcagccgga ccacgcagaa cttcaatacg ttcaatcatt tcaggcggca
     2701 cccaggaagt atcaccacgg gtatcgcgct cgccacgcca gccctgacgc accgagttac
     2761 ggctgctgac cggtttgccg tcaattaaaa tcagcgtgtt ttccggacct ataccgcgaa
     2821 tatcaatctg tcggttattc ccacgctgac cactggtgga gttaccggtc aggttaacgc
     2881 ctggcatggt acggatgatc tccgacacat cgcgggcaac cgggtttttg cggatttcat
     2941 ctgcggtgat ggtcgaaacg ccaggtgcct gcaagttctg ctcggcggcg gtaacgacaa
     3001 tggtatcgtc atgtgaaaca ggagtatcgg tcggctcttg tgcctgcgct accccataaa
     3061 tccccagatt gaccaacaag gccagggaat gaatcttctt gttcattgtt ttattcctgc
     3121 atttttgcca cgaattgcaa ctgtcgggca tggtcgtcct caacacgacg catcccgcta
     3181 ccgcgaaaac ctttgatcct gaaagacacg cagtgcagtt ggttaattaa tgtccgcgct
     3241 tcccacggcg cgccattacg ctattgcaaa tgcaaatagt tatcaataat attatcaata
     3301 tatttctgca atcaatgaaa aattgcacag taaacatggg gttatggtgt gacggcgtta
     3361 aaagtaggaa gtgagagctg gtggcagtcg aaacatggcc cggaatggca gcgtctgaat
     3421 gacgaaatgt ttgaggtcac tttctggtgg cgtgatcccc aaggttctga agaatactcg
     3481 ccgataaagc gcgtatgggt ctacatcact ggtgtgaccg atcatcatca gaacagccag
     3541 ccccagtcga tgcagcgcat tgcaggtact gatgtctggc agtggacgac acaactcaat
     3601 gccaactggc gcggcagcta ctgctttatt cccaccgaac gcgatgacat tttttctgca
     3661 ccatcccccg atcgcctcga attacgtgaa ggctggcgaa aactattacc ccaggcaata
     3721 gccgatccgc tgaatccaca aagctggaaa ggcgggcgag ggcacgctgt ttctgcactc
     3781 gaaatgccgc aagcgcctct gcaaccggga tgggattgtc cgcaagcgcc agaaatacca
     3841 gccaaagaaa ttatctggaa aagtgaacgg ttgaaaaatt cacgtcgtgt atggattttt
     3901 accaccggcg atgcaacagc agaagaacgc ccgctggcag ttttgctcga tggcgaattt
     3961 tgggcgcaaa gtatgcccgt ctggccagtg ctgacttcgc tgacccatcg tcagcaactt
     4021 cctcccgccg tgtatgtgtt gatcgacgct atcgacacca cgcaccgcgc tcacgaactg
     4081 ccgtgtaatg cggatttctg gctcgcagta cagcaagagt tattacccct ggtgaaagct
     4141 attgcccctt ttagcgatcg cgccgatcgc accgtggttg ccgggcagag ttttggtgga
     4201 ctttccgcgc tgtatgccgg actgcactgg cctgaacgtt ttggttgtgt attaagccag
     4261 tcaggatcgt actggtggcc gcatcggggc gggcagcaag agggcgtgtt acttgaaaag
     4321 cttaaagctg gtgaagttag cgccgaaggt ctgcgcattg tgctggaagc gggtattcgc
     4381 gagccgatga ttatgcgggc caatcaggcg ctgtatgcgc aattacaccc cataaaagaa
     4441 tccattttct ggcgtcaggt tgacggcgga catgatgcgc tttgttggcg cggtggcttg
     4501 atgcaggggc taatcgacct ctggcaacca cttttccatg acaggagttg aatatggcat
     4561 tcagtaatcc cttcgatgat ccacagggag cgttttacat tttgcgcaat gcgcaggggc
     4621 aattcagtct gtggccgcaa caatgcgcct taccggcagg ctgggacatt gtgtgtcagc
     4681 cgcagtcaca agagtcctgc cagcagtggc ttgaagccca ctggcgtact ctgacaccgg
     4741 cgaatttcac ccagttgcag gaggcgcaat gagccagcat ttacctttgg tcgccgcaca
     4801 gcccggcatc tggatggcag aaaaactgtc ggatttaccc tccgcctgga gcgtagcgca
     4861 ttacgttgag ttaaccggag aggttgatgc gccattactg gcccgcgcgg tggttgacgg
     4921 actagcgcaa gcagatacgc tgcggatgcg ttttacggaa gataacggcg aagtctggca
     4981 gtgggtcgat gatgcgctga cgttcgaact gccagaaatt atcgacctgc gaaccaacat
     5041 tgatccgcac ggtactgcgc aggcattaat gcaggcggat ttgcaacaag atctgcgcgt
     5101 cgatagcggt aaaccactgg tctttcatca gctgatacag gtggcggata accgctggta
     5161 ctggtatcag cgttatcacc atttgctggt cgatggcttc agtttcccgg ccattacccg
     5221 ccagatcgcc aatatttact gcacatggct gcgtggcgaa ccaacgcctg cttcgccgtt
     5281 tacgcctttc gctgatgtag tggaagagta ccagcaatac cgcgaaagcg aagcctggca
     5341 gcgtgatgcg gcattctggg cagaacagcg tcgtcaactg ccgccgcccg cgtcactttc
     5401 tccggcacct ttaccggggc gcagcgcttc ggcagatatt ttacgtctga aaatggaatt
     5461 taccgacggg gaattccgcc agttggctac gcaactttca ggtgtgcagc gtaccgattt
     5521 agcccttgcg ctgacggctt tgtggctggg gcgattgtgc aatcgcatgg actacgccgc
     5581 tggatttatc tttatgcgtc gactgggctc ggcggcgctg acggctaccg gacccgtgct
     5641 caacgttttg ccgttgggta ttcacattgc ggcgcaagaa acgctgccgg aactggcaac
     5701 ccgactggca gcacaactga aaaaaatgcg tcgtcatcaa cgttacgatg ccgaacaaat
     5761 tgtccgtgac agcgggcgag cggcaggtga tgaaccgctg tttggtccgg tactcaatat
     5821 caaggtattt gattaccaac tggatattcc tggtgttcag gcgcaaaccc ataccttggc
     5881 aaccggtccg gttaatgacc ttgaactggc cctgttcccg gatgaacacg gtgatttgag
     5941 tattgagatc ctcgccaata aacagcgtta cgatgagcca acgttaatcc agcatgctga
     6001 acgcctgaaa atgctgattg cccagttcgc cgcggatccg gcgctgttgt gcggcgatgt
     6061 cgatattatg ctgccaggtg agtatgcgca gctggcgcag atcaacgcca ctcaggttga
     6121 gattccagaa accacgctga gcgcgctggt ggcagaacaa gcggcaaaaa caccggatgc
     6181 tccggcgctg gcagatgcgc gttaccagtt cagctatcgg gaaatgcgcg agcaggtggt
     6241 ggcgctggcg aatctgctgc gtgagcgtgg cgttaaaccg ggcgacagcg tggcggtggc
     6301 gctaccgcgc tcggtctttt tgaccctggc gctacatgcg atagttgaag ctggcgcggc
     6361 ctggctaccg ctggataccg gctatccgga cgatcgcctg aaaatgatgc tggaagatgc
     6421 gcgtccgtcg ctgttaatca ccaccgacga tcaactgccg cgctttgccg atgttccaga
     6481 tttaaccaac ctttgctata acgccccgct taaaccgcag ggcagtgcgc cgctgcaact
     6541 ttcacaaccg catcacacgg cttatatcat ctttacctct ggctccaccg gcaggccgaa
     6601 aggggtaatg gtcgggcaga cggctatcgt taaccgcctg ttgtggatgc aaaatcatta
     6661 tctgcttaca ggcgaagatg tcgttgccca aaaaacgccg tgcagttttg atgtctcggt
     6721 gtgggagttt ttctggccgt ttattgccgg ggctaaactg gtgatggctg aaccggaagc
     6781 gcaccgcgac ccgctcgcta tgcagcaatt ctttgccgaa tatggcgtaa cgaccacgca
     6841 ctttgtgccg tcgatgctgg cagcatttgt tgcatcgctg acgccgcaaa ccgctcgcca
     6901 gagttgcgcg acgttgaaac aggttttctg tagtggtgag gccttaccgg ctgatttatg
     6961 ccgcgaatgg caacagttaa ccagcgtgcc gttgcataat ctatatggcc cgacggaagc
     7021 ggcggtagat gtcagctggt atccggcttt tggcgaggaa ctggcacagg tgcgcggcag
     7081 cagtgtgccg attggttatc cggtatggaa tacggatctg cgtattcttg atgcgatgat
     7141 gcatccggtg ccgccgggtg tggcgggtga tctctatctc accggcattc aactggcgca
     7201 ggggtatctt ggacgacccg atctgaccgc cagccgcttt attgccgatc cttttgtccc
     7261 tggtgaacgg atgtaccgta ccggagacgt tgcccgctgg ctggataacg gcgcggtgga
     7321 gtacctcggg cgcagtgacg atcagctaaa aattcgcggg cagcgtatta aactgggcga
     7381 aatcgatcgc gtgatgcagg cgctgccgga tgtcgaacaa gccgttaccc acgcctgtgt
     7441 gattaaccag gcggcagcca ccggtggtga tgcgcgtcag ttggtgggct atctggtgtc
     7501 gcaatcaggt ctgccgttgg ataccagcgc attacaggcg cagcttcgcg aaacattgcc
     7561 accacatatg gtgcccgtgg ttctgctgca acttccactg ttacctctta gcgccaacgg
     7621 caagctggat cgcaaagcct taccgttgcc tgaactgaag gcacaagcgc cggggcgtgc
     7681 gccaaaagcg ggcagtgaaa cgattattgc cgcggcattc gcgtcgttgc tgggttgtga
     7741 ggtgcaggat gccgatgctg atttctttgc gcttggcggt cattcgctac tggcaatgaa
     7801 actggcagcg cagttaagtc ggcaggttgc ccgccaggtg acgccggggc aagtgatggt
     7861 cgcgtcaacc gtcgctaaac tggcaacgat tattgatgct gaagaagaca gcacccggcg
     7921 tatgggattc gaaaccattc tgccgttgcg tgaaggtaat ggcccgacgc tgttttgttt
     7981 ccatccggca tccggttttg cctggcagtt tagcgtgctc tcgcgttata tcgatccaca
     8041 atggtcgatt atcggcattc agtcgccgcg ccccaatggc cccatgcata ccgcggcaaa
     8101 tctggatgaa gtctgtgaag cgcatctggc aacgttactt gaacaacaac cgcacggccc
     8161 ttattacctg ctggggtatt cccttggcgg tacgctggcg cagggcattg cggcgcgact
     8221 gcgtgcccgt ggcgaacagg tggcatttct tggtttgctg gatacctggc cgccagaaac
     8281 gcaaaactgg caggaaaaag aggctaatgg tctggacccg gaagtgctgg cggagattaa
     8341 ccgcgaacgc gaggccttcc tggcggcaca gcagggaagt acttcaacgg agttgtttac
     8401 caccattgaa ggcaactacg ctgatgctgt gcgtctgctg acgactgctc atagcgtacc
     8461 gtttgatggt aaagcgacgc tgtttgttgc tgaacgcacg cttcaggaag gtatgagccc
     8521 cgaacgcgct tggtcgccct ggattgccga gctggatatc tatcgtcagg attgtgcgca
     8581 tgtggatatt atctctccag gggcgtttgt aaaaattggg ccgattattc gcgcaacgct
     8641 aaacaggtaa attaatatta tctataaacc cataattaca gaaaataatt atgggttttt
     8701 tatttgtttg atttataggt ttgatgaata tttctcttaa atagagtgag tgttgcattc
     8761 agtggaagga atttacaaac ttcagcttcg gataatttct caccaactgg taaagtgagc
     8821 gccgtggaga tttcccccta ttggactcat tttcaggtta tacccatgtc atcactgaat
     8881 attaaacagg gaagtgacgc tcatttttcc gagtatcctc tggcgtcgcc cagtagtaat
     8941 gaaattgatt tacttaatct aatcgaagtt ttatggcggg ccaaaaaaac ggtcatggcg
     9001 gtcgtttttg catttgcctg cgcaggttta ctgatctctt tcatcctgcc gcaaaaatgg
     9061 accagctcag ccgttattac tcccgccgaa gccattcagt ggcaggacct ggagaaaacc
     9121 tttaccaaac tccgcgttct tgatctcgat gttaatatcg accgtggcgg tgcatttaac
     9181 ctgtttatca agaagtttca gtccgttagc ttgctggaag agtacctgcg ttcatcacct
     9241 tatgtgatgg accaattaaa agaggcgaaa atcgatgaac tggatttgca tcgcgctatt
     9301 gttgcattga gcgaaaaaat gaaagcggtt gatgacaatg ccagtaagaa aaaagatgaa
     9361 ccgtcactgt atacctcctg gacgctaagt tttaccgcgc caaccagtaa agaggcgcag
     9421 accgttttga gcgggtatat cgattatatc tctgcgttgg tggtgaaaga gtcgatagaa
     9481 aacatccgta ataaactgga gatcaaaacc cagtttgaaa aagaaaaact ggctcaggat
     9541 cgcattaaaa cgaaaaatca acttgatgca aacattcagc gcctcaatta ttctctcgac
     9601 attgccaacg cggcaggaat taaaaagccc gtatacagta atggtcaggc cgttaaagat
     9661 gaccccgatt tctctatttc tctcggcgca gacggtattg aacgcaaact ggaaattgaa
     9721 aaagcggtta ctgacgttgc ggaactgaac ggtgaattac gtaatcggca gtatcttgtc
     9781 gagcaattaa caaaagcaaa tgtcaacgat gtgaatttta cgccgtttaa atatcagtta
     9841 agcccgtcat tgccagtgaa aaaagacggt ccgggtaagg cgattattgt gatcctttcc
     9901 gcgctgatcg gcgggatggt ggcttgtggt agcgtgttat tgcgctatgc gatggcatcc
     9961 agaaaacagg atgccatgat ggcagaccac ttagtttaac tatttgcggt tgaaggtgcc
    10021 gttcgttcga gcggcaccac aagcggcgtt ccggctaccg gatcgtcaat gatcatgcat
    10081 cgcagaccat aaatgcgctc aatcagttca gcagtgacaa tctccttcgg cgctccctga
    10141 gcaacaattt tcccttcccg caatgcaatc aaatggctgg cgtaacgaca ggcctgatta
    10201 agatcgtgca gcaccgccgc cagggtatag cctttctcgc ggttcagttc gcttaacagt
    10261 tccagtagat caatctgatg actgatatcc agccaggtcg tgggttcgtc gagcagcata
    10321 attgccgttt cctgggccag caccatcgcg atccacgctc gctggcgttg tccgccagaa
    10381 agggtatcca cgctttgatc tgccagatga gttattcccg tggcctgcat cgctttcgtt
    10441 accgcttctt catcctcttt gcgccagtgg gtaaacagcg gttgatgcgg ataacgtcca
    10501 cgcgccacca gctcctgcac ggtgatatcg cccggcgtgg tagcattttg cgccaacaga
    10561 ccaatccggc gtgcaacttc tttactggcg taatgttgaa tgtgctcgcc atccagccag
    10621 acatgcccgt gagcaggcgt catcaggcgg cttaaggtac gcagtaacgt ggatttacca
    10681 cagccatttg gtccgataat tgccgtgaag tgaccatcag gaatttctac agtcagattt
    10741 tccgcaacgg tatatttgcc atatcccagg gttaactgtt cgccgcgcaa acgggctact
    10801 gattcggtca ttttttgcga gactcctgaa ttaacaagac gataaggtaa ataccgccga
    10861 ggctgacggt aacgacgcca accggaagtt gatacggcat aaacagttgt tgggcgcaga
    10921 gatcggccgc cagcagtaac agcgctccgc acagcgccgc ctgggtcagc ccccagcgag
    10981 cggtgccgct aatgcgtcgg gcaatgtgcg gcgcgactaa agcaataaag gaaatcggcc
    11041 cggcaagcgc cgttgccgca gcggtaagca ccactgcaac cagcatcatt aacagacgcg
    11101 aacgctcgac gctgacgccc agcgcgcagg cggtatcatc gcccatctcc agcaagcgca
    11161 ttcgccgcac cagcaaggcg gcggcaatga gcatcaatat aatgatgggt gcggaaggcg
    11221 aagtttttgc ccacgtcagg ccattgagcg atccggcatt ccacaaaccc gctgttagcg
    11281 ccgtttctaa agacgctttc agcaacagcc aagtattaaa ggccaccagc atggcgcgaa
    11341 cgccgatgcc gataataatc aaccgaaagg tgtcgatacc gttacgccag gcgagcagcc
    11401 agaccaacag agaagtgaca atgccgccca ccattgctgc cagcgcgata gccgtcaggt
    11461 cctgaccaaa cagcaccatc gccaccagca cgccgctcca cgccccggtg ttaaagccca
    11521 ttacgtcagg gctgccgagc gggttacgca tcagcgactg aaaaatcgca ccgctgacgc
    11581 ccagtgccgc gccaatcaac agcgccatca gcacgcgtgg taaacgccat tcggtgacca
    11641 ccatcgtcat actgcgcggc gcatcgccca tcagcgcggc gaatacctgc gaggtttcca
    11701 gcgtgacggc accgctgcgt aatccccaga tacctgcaac cacacaggcg gaaataagca
    11761 gcaaacaggt gatgagtaat cggcgagaga cgtaaatcat gcaccacctc gcgttttacg
    11821 tcgcacgagg aagatcagca ccggtgcacc aataaaggca ctgaccacag aaacgcgcag
    11881 ttcaccgggc acaatcaccc gcccgatgat atcggcaaac agcagcaggg caggggtagc
    11941 aagcagcgtt acgggcagcg accagcgatg atcggcaccc accagccaac gcgccatatg
    12001 cggcatcatc aggccaataa aggcaatcgg gccaactacc gctgtcgcac taccacaaag
    12061 cacggtaatc gccagcagac caattaactg tgtgcgcgcc acgcgactgc ccagcgccgt
    12121 cgcggtgtcg ctgccgaggc ttaaactgtt cagcgcgcgg ctcagtaata gcgcggttgc
    12181 tccggcgatc agcaccggga tcagcaccac ttttaaggta tgtagattgc gaatatccag
    12241 cgaaccggct tgccagaaac gcagttgatc gtagacgtca ggattaagca gggcgatgcc
    12301 gctggtcagc ccttccagca ctgccgccag cgccacgccc gccagggtta aacgcaccgg
    12361 acttaactgc ccgccgccct gactgccggt aaaggcaaca atcaatgagg ccaccagcgc
    12421 cccggcgaag gccatcgcca gttgttcctg cgcggatgag taaccaaaca gcgccgcacc
    12481 cagcacaatg gcaaagctgg ctccggcgtt cacgccaagc aagccggggt cggcaagtgg
    12541 atttcgggtg agggtttgca tcaacgcccc ggcaaggcca agcgcgccgc ctgccagtaa
    12601 accggcaagg gtgcgcggca gtcgcgcgtc gagcacgatg gtgcagtcgg cgctctggca
    12661 ggtgccggag aaggcctcca gcactacgga agcggggagt gattttgctc caatgagcag
    12721 gcttaatgcc gtcgcgataa tcagtaataa cagcaatccg ggcacggcaa tggcgcgtgt
    12781 cacggcaaca gaaccagaca tatgaacttc catgataatg aaattaatta tcgttatcga
    12841 tcttatttgg atatgttagc atgtgcagcc taagaatagg tatttaaaat atttgatggc
    12901 aaggcattgt aatgaataaa caatcctggc tgcttaacct cagcctgttg aaaacgcacc
    12961 cggcgtttcg cgcagtattc ctcgctcgtt ttatctcaat tgtgtctctg ggtttgctcg
    13021 gcgtcgcggt gccggtgcag atccagatga tgacgcattc tacctggcag gtggggcttt
    13081 cggtgacgct gaccggcggc gcgatgtttg ttggcctgat ggttggcggt gtgctggcgg
    13141 atcgctatga gcgcaaaaaa gtgattttgc tggcgcgcgg cacctgtggc attggcttca
    13201 ttggactgtg ccttaatgca ctgctgccgg agccgtcatt gctggcaatc tatttacttg
    13261 gtttatggga tggttttttc gcatcgcttg gcgttacggc gctattggcg gcgacaccag
    13321 cactggtagg gcgtgaaaac ttaatgcagg ccggggcgct caccatgttg accgtgcgtc
    13381 tggggtcggt gatttcgccc atgattggcg gtttattgct ggcgaccggt ggcgtagcct
    13441 ggaactacgg gctggcggcg gcgggcacgt ttattacctt gctaccgttg ttaagccttc
    13501 cggcgttgcc accgccaccg cagccgcgcg agcatccgtt gaaatcatta ctggcaggat
    13561 ttcgttttct gctcgccagc ccgctggtgg gcgggattgc gttgctgggt ggtttattga
    13621 cgatggcgag cgcggtgcgg gtactgtatc cggcgctggc tgacaactgg cagatgtcgg
    13681 cggcagagat tggttttctc tatgcggcga tcccgctcgg tgcggctatt ggcgcattaa
    13741 ccagtgggaa actggcgcat agcgcgcgac caggattgtt gatgttgctc tccacgttgg
    13801 gatcgttcct cgccattggt ttatttggcc tgatgccgat gtggatttta ggcgtggttt
    13861 gtctggcgct gttcggctgg ctgagtgcgg tcagttcgtt gctgcaatat acaatgctgc
    13921 aaacgcaaac gccggaagca atgttagggc gaattaacgg tttgtggacg gcacaaaacg
    13981 tgacgggcga tgccataggc gcggcgctgt taggcggtct gggagcgatg atgacaccgg
    14041 ttgcttccgc aagcgcgagc ggttttggtt tgttgattat cggcgtgttg ttattgctgg
    14101 tgctggtgga gttgcgacgt tttcgccaga cgccgccgca ggtgacagcg tccgacagtt
    14161 aatgcttaaa acagcgcctt aagtcgttcc agcacttgca tggcgctgta gtaatccagg
    14221 cggaacgtct cggttcccag cgcataaacc tgcttgtttt gtactgcggg caggtgcgcg
    14281 agcagtggat tggcataaat cgcatcggcg tctttctgat caccggcgaa caggaatagt
    14341 gactcgccat ttaaccctgc agccagattt tctccaccaa gctgaatgat gtcatggcgt
    14401 ttgccctggc tttggctggc gtttaaccct gtgggcaatt tcgccagcgt aaagccgagt
    14461 tgttccagca tctgcccttg tgctgattcc ggcgtccaga gattggcact gtgtgcagcg
    14521 gcggtataga caatagcagt gaccggctgc ggcggtaatt tgatttgctc tttcgccgct
    14581 gccagttgct tatcaaactg tgcaatccgc tctgccgctt gtttctcatg cccggtaatt
    14641 tcgccaagct gcgttaacag cgactgccag cttttgtcgt cgtaattgat gattaatgtc
    14701 ggggcgatgg tggaaagctg atcatacagc gccagcgccg aatccccgcc ggttgcgcta
    14761 attaaaatca gatccggcat ttgcgcggca acggcttcgg cgctcggttc gccgatatag
    14821 agccgttgta gtttgcgttc tttcgccacc ttgctccact ggcgtaaaaa gccctggtca
    14881 tccgcgacgc ggttatttgg cgtggtcgcg ccgctggcaa tcaccggagc atcaatcgcc
    14941 agcagtgagc cggtcagggt gacgctggtg gaaacaatac gctgcggctg gctttccagg
    15001 gtatgagtgc cccggctgtc agtaatctga cgcggccagt cggcggcctg aactgcggct
    15061 attccggaaa gcaaaagtcc tgttaataga agggcgttgc ggtagagcgg ggcgagtctc
    15121 acaaatcagc ttcctgttat taataaggtt aagggcgtaa tgacaaattc gacaaagcgc
    15181 actatccgta ccctctcccc tttggggaga gggttagggg gatgggaaca gccagcactg
    15241 gtgcgaatat tgaccctcac cccagccctc tccctggaag ggagaggggg aagaacggcg
    15301 caggacatca cattgcgctt atgcgaatcc atcaataatg cttctcattt tcattgtaac
    15361 cacaaccaga tgcaaccccg agttgcagat tgcgttacct caagagttga catagtgcgc
    15421 gtttgctttt aggttagcga ccgaaaatat aaatgataat cattattaaa gcctttatca
    15481 ttttgtggag gatgatatgg atacgtcact ggctgaggaa gtacagcaga ccatggcaac
    15541 acttgcgccc aatcgctttt tctttatgtc gccgtaccgc agttttacga cgtcaggatg
    15601 tttcgcccgc tttgatgaac cggctgtgaa cggggattcg cccgacagtc ccttccagca
    15661 aaaactcgcc gcgctgtttg ccgatgccaa agtgcagggc atcaaaaatc cggtgatggt
    15721 cggggcgatt cccttcgatc cacgtcagcc ttcgtcgctg tatattcctg aatcctggca
    15781 gtcgttctcc cgtcaggaaa aacaagcttc cgcccgccgt ttcacccgca gccagtcgct
    15841 gaatgtggtg gaacgccagg caattccgga acaaaccacg tttgaacaga tggttgcccg
    15901 cgctgccgca cttaccgcca cgccgcaggt cgacaaagtg gtgttgtcac ggttgattga
    15961 tatcaccact gacgccgcca ttgatagtgg cgtattgctg gaacggttga ttgcgcaaaa
    16021 cccggttagt tacaacttcc atgtcccgct ggctgatggt ggcgtcctgc tgggggccag
    16081 cccggaactg ctgctacgta aagacggcga gcgttttagc tccattccgt tagccggttc
    16141 cgcgcgtcgt cagccggatg aagtgctcga tcgcgaagcg ggtaatcgtc tgctggcgtc
    16201 agaaaaagat cgccatgaac atgaactggt gactcaggcg atgaaagagg tactgcgcga
    16261 acgcagtagt gagttacacg ttccctcctc tccacaattg attaccacgc cgacgctgtg
    16321 gcatctcgca actccctttg aaggtaaagc gaattcgcaa gaaaacgcac tgactctggc
    16381 ctgtctgctg catccgaccc ccgcgctgag cggtttcccg catcaggccg cgactcaggt
    16441 tattgctgaa ctggagccgt tcgaccgcga actgtttggc ggcattgtgg gttggtgtga
    16501 cagcgaaggt aacggcgaat gggtggtgac catccgctgc gcgaagctgc gggaaaatca
    16561 ggtgcgtctg tttgccggag cggggattgt gcctgcgtcg tcaccgttgg gtgagtggcg
    16621 cgaaacaggc gtcaaacttt ctaccatgtt gaatgttttt ggattgcatt aaggagcgag
    16681 gatgagcatt ccattcaccc gctggccgga agagtttgcc cgtcgctatc gggaaaaagg
    16741 ctactggcag gatttgccgc tgaccgacat tctgactcgc cacgctgcga gtgacagcat
    16801 cgcggttatc gacggcgagc tacagttgag ttaccgggag ctgaatcagg cggcggataa
    16861 cctcgcgtgt actttacgcc gtcagggcat taaacctggt gaaaccgcgc tggtacaact
    16921 gggtaacgtc gctgaattgt atattacctt tttcgcgctg ctgaaactgg gcgttgcgcc
    16981 ggtgctggcg ttgttcagcc atcagcgtag tgaactgaac gcctatgcca gccagattga
    17041 acccgcattg ctgattgccg atcgccaaca tgcgttgttt agcggggatg atttcctcaa
    17101 tactttcgtc acagaacatt cctccattcg cgtggtgcaa ctgcacaacg acagcggtga
    17161 gcataacttg caggatgcga ttaaccatcc ggcagacggt tttactgcca cgccatcacc
    17221 tgctgatgaa gtggcctatt tccagctttc cggcggcacc accggtacac cgaagctgat
    17281 cccgcgcact cataacgact actactacag cgtgcgtcgt agcgtcgaga tttgtcagtt
    17341 cacacaacag acgcgctacc tgtgcgcgat cccggcggct cataactacg ccatgagttc
    17401 gccaggatcg ctgggcgtct ttcttgccgg aggaacggtt gttctggcgg ccgatcccag
    17461 cgctacgctt tgcttcccat tgattgaaaa acatcaggtg aacgtcaccg cgctggtgcc
    17521 gccggcagtc agcctgtggt tgcaggcgct ggctgaaggc gaaagccggg cgcagcttgc
    17581 ctcgctgaaa ctgttacagg tcggcggcgc acgtctttct gccacccttg cggcgcgtat
    17641 tcccgctgag attggctgcc agttgcagca ggtgtttggc atggcggaag ggctggtgaa
    17701 ctacacccgt cttgatgata gcgcggagaa aattatccat acccagggtt acccaatgtg
    17761 tccggacgat gaagtgtggg ttgccgatgc cgaaggaaat ccactgccgc aaggggaagt
    17821 cggacgcctg atgacgcgcg ggccgtacac cttccgcggt tattacaaaa gtccgcagca
    17881 caatgccagc gcctttgatg ccaacggttt ttactgttcc ggcgatctga tctctattga
    17941 tccagagggt tacatcaccg tgcaggggcg cgagaaagat cagatcaacc gtggcggcga
    18001 gaagatcgct gccgaagaga tcgaaaacct gctgctgcgc catccggcgg tgatctatgc
    18061 cgcactggtg agcatggaag atgagctgat gggcgaaaaa agctgtgctt atctggtggt
    18121 aaaagagccg ctgcgcgcgg tgcaggtgcg tcgtttcctg cgtgaacagg gtattgccga
    18181 atttaaatta ccggatcgcg tggagtgtgt agattcactt ccgctgacgg cggtcgggaa
    18241 agtcgataaa aaacaattaa gtcagtggct ggcgtcacgc gcatcagcct gaaggagaga
    18301 acacgatggc tattccaaaa ttacaggctt acgcactgcc ggagtctcac gatattccgc
    18361 agaataaagt tgactgggcc tttgaactgc aacgtgccgc gttgttaatc catgatatgc
    18421 aggactattt tgtcagcttc tggggcgaga actgcccgat gatggagcag gtgatcgcga
    18481 atattgctgc gctgcgcgac tactgcaaac agcacaatat cccggtttat tacaccgtcc
    18541 agccgaaaga gcagagcgat gaagatcggg cgctgttgaa tgatatgtgg gggccgggcc
    18601 tgacccgttc gccggaacag caaaaggtgg tggatcgcct gacgccagat gccgacgaca
    18661 cggtgctggt gaagtggcgc tacagcgcgt ttcatcgttc tccgctggag caaatgctca
    18721 aagagagtgg acgtaaccag ctgattatta ccggggtata tgcccacatt ggctgtatga
    18781 ccaccgcaac cgacgcattt atgcgcgata ttaaaccgtt tatggtggcg gatgcgctgg
    18841 ccgatttcag ccgtgacgag catttgatgt cgctgaaata tgtggccggg cggtctggcc
    18901 gggtggtgat gactgaagaa ttactgccag cacctgtccc cgccagcaaa gcggcgctgc
    18961 gtgaggttat cctgccgttg ctggacgagt ccgatgaacc gttcgatgac gacaacctga
    19021 tcgactacgg tctggattcg gtgcgcatga tggcgctggc ggcgcgctgg cgcaaagtgc
    19081 atggtgatat cgactttgtc atgctggcga aaaaaccgac catcgacgcc tggtggaagc
    19141 tactctcccg cgaggttaaa taatggattt cagcggtaaa aatgtctggg taaccggcgc
    19201 aggtaaaggt atcggctacg ccacggcgct ggcgtttgtt gaggcgggag cgaaagttac
    19261 aggttttgat caagcgttca ctcaggagca atatcccttt gcgaccgaag taatggatgt
    19321 tgccgacgcc gggcaggtgg cgcaggtatg tcagcgactg ttagctgaaa cggagcgact
    19381 ggacgtgctg atcaatgcgg cgggaatttt gcgcatgggc gcgaccgatc agctcagtaa
    19441 agaggactgg cagcagactt ttgcggttaa cgtcggcggt gcgtttaacc tgttccagca
    19501 aaccatgaac cagtttcgcc gtcagcgggg cggggcgatt gtcactgtgg cgtccgacgc
    19561 cgcacacacg ccgcgtattg gtatgagtgc ttatggcgca tcgaaagcgg cgctgaaaag
    19621 cctggcgttg agcgtcgggc tggaactggc gggtagcggc gtgcgctgta atgtggtttc
    19681 gcctggctcc accgacaccg atatgcaacg cacgctgtgg gtgagcgatg acgccgaaga
    19741 acagcgtatt cgcggctttg gcgagcagtt taaactcggc attccgctgg ggaaaatcgc
    19801 ccgtccacaa gagatcgcca acacgatttt gttcctcgcc tctgacctcg ccagccatat
    19861 caccctacag gatattgtgg tcgatggcgg ctcaacgctg ggggcataag catgatctgg
    19921 aaacgccatt taacgctcga cgaactgaac gccaccagcg ataacacaat ggtggcgcat
    19981 ctgggaattg tgtatacccg tctgggagat gatgtgctgg aagccgaaat gccggttgat
    20041 acccgtactc atcagccgtt tggcctgctg catggcggcg cgtcggcggc gctggctgaa
    20101 acgctgggat cgatggccgg atttatgatg acccgtgacg ggcagtgtgt ggtgggcacg
    20161 gaacttaacg ccacccatca tcgcccggtg tctgaaggca aggtacgcgg cgtctgccag
    20221 ccgctgcatc ttgggcggca aaatcagagc tgggaaatcg tcgttttcga tgaacagggg
    20281 cggcgttgct gcacttgtcg gctgggtacg gcagttttgg gatgagcccg acagaattaa
    20341 atgagattgc aggaaaactc ggttaacgga gtgatcgagt taacattgtt aagttaaata
    20401 ttggtttcaa ctccgattta catagttacc gtgttgttaa atcgtacaaa gatgttatag
    20461 aaacaaaatg taacatctct atggacacgc atacggataa caactatgaa caaatcaggg
    20521 aaatacctcg tctggacagt gctctctgta atgggagcat ttgctctggg atacattgct
    20581 ttaaatcgtg gggaacagat caacgcgctg tggattgtgg tggcgtcggt ctgtatctat
    20641 ctgatcgctt accgttttta tgggttgtat atcgccaaaa atgtgctggc ggttgacccg
    20701 aagcgtatga cgccagcggt gcgccataac gacgggctgg actatgtgcc gacggacaag
    20761 aaagtgctgt tcggtcacca ttttgcggcc atcgccggag caggtccgtt ggttgggccg
    20821 gtgctggcag cgcaaatggg ctacctgccg gggatgatct ggctactcgc cggggtggtt
    20881 ctcgccggtg cggtgcagga tttcatggtg ctgtttgttt ctacgcgccg tgacggtcga
    20941 tcgctgggtg agctggtcaa agaagagatg gggccaaccg ccggggtgat agcgctggtg
    21001 gcctgcttta tgatcatggt cattatcctt gcagtactgg cgatgatcgt ggtgaaagcc
    21061 ctgactcata gcccgtgggg aacgtatacc gttgcgttca ccattccgct ggcgctgttt
    21121 atggggatct acctgcgcta tctgcgtctg gggcgtattg gtgaagtgtc ggtcatcggt
    21181 ctggtattcc tgattttcgc cattatctct ggcggcaggg tggcagaaag tccgacctgg
    21241 gcaccgtact ttgactttac cggcgtgcag ctgacctgga tgctggtggg ttacggtttt
    21301 gtggcggcgg tgctgccggt gtggttgctg ctggccccgc gtgactacct ctctaccttc
    21361 ctgaaaatcg ggacgatcgt cggtctggcg gtaggcattt tgattatgcg cccgacgctg
    21421 accatgcctg cgctgaccaa atttgtcgat ggcactggcc cggtatggac cggtaacctg
    21481 ttcccgttcc tgtttatcac catcgcctgt ggcgcggtgt ctggcttcca tgcgctgatc
    21541 tcttccggca ccacgccgaa gatgctggcg aacgaagggc aggcttgttt tatcggctac
    21601 ggtggaatgt taatggaatc cttcgtggcg attatggcgc tggtttccgc ctgtatcatc
    21661 gatccgggcg tttactttgc catgaacagc ccaatggcgg tgctggctcc ggcagggacg
    21721 gcggatgtgg tcgcttctgt cgcgcaggtg gtgagtagct ggggctttag cattacacca
    21781 gatacgctca accagattgc cagcgaagtg ggtgaacagt cgatcatttc ccgtgcgggc
    21841 ggtgcgccga cgttggcggt ggggatggct tacatcctgc acggtgcgct gggtggtatg
    21901 atggatgtgg cgttctggta tcacttcgcc attctgtttg aagctctgtt tattctgacg
    21961 gcggtagatg cgggtacgcg tgctgcgcgc tttatgttgc aggatctgct gggcgtggtg
    22021 tctcctggcc tgaagcggac cgattcactg cctgctaacc tgctggcaac ggcgctgtgc
    22081 gtactggcgt ggggctactt cctccatcag ggcgtggtcg atccgctggg cggtattaac
    22141 actctgtggc cgctgtttgg tattgccaac cagatgctgg cagggatggc gctgatgctc
    22201 tgtgccgtgg tgttgttcaa gatgaaacgt caacgttacg cctgggcggc gctggtacca
    22261 acggcctggc tgctgatttg taccctgacc gctggctggc agaaagcgtt tagcccggat
    22321 gcgaaagtcg gcttcctagc cattgctaac aagttccagg caatgatcga cagcggcaat
    22381 attccgtcgc agtatactga gtcacagctg gcgcaactgg tgttcaacaa ccgtctggat
    22441 gccgggttaa ccatcttctt tatggtggtc gtggtggttc tggcactgtt ctcgattaag
    22501 acggcacttg cggcattgaa agatccgaag ccaacggcga aagaaacgcc gtatgagccg
    22561 atgccggaaa atgtcgagga gatcgtagcg caggcgaaag gcgcgcacta aagtcagagt
    22621 gaggggggat gttggcgaat gttggcatag tgccgagggt tccccctcac cctaaccctc
    22681 tccccgatgg ggcgagggga ctgaccgagt gcgttgatag catttgtagg ccggataaag
    22741 cgttcacgcc gcatccggca ctctttcagc aacatggtta gcggaggcca agatgtttga
    22801 ttcactggca aaagccggaa aatatttagg tcaggcggcg aagctgatga ttggtatgcc
    22861 tgattacgac aactatgtcg aacatatgcg ggttaaccat cccgatcaaa cgccgatgac
    22921 ctacgaggag tttttccgtg agcggcagga cgcgcgctac ggtggaaaag gcggcgcgcg
    22981 ctgctgctaa atttgcacgt caggctttaa acgattccac tttttcgaac gctgcacgca
    23041 acgtatctgg tgtcagcgtg actggcaggt aatgaatgga ctccaccggg cgcaaggtgt
    23101 gggcaatcac tttgtcgatc tccgcctgat tattgatatc cacttccagc tccgccagcg
    23161 tagtcggcag atgaaaacgc tgatacgccc cggttaattg cgccagcaca tcatcctgac
    23221 ccagcaaggc gctttgcacc agaattccgt aagcgacttt ggtgccgtga agaaacttct
    23281 cggtttgcgg caggacagtc agaccgttat gcacggcatg agccgccgcc acacgcgtaa
    23341 aacgatcgcc cagaccaccg accatcccac caccagcaat aatagcatcc accacatcgc
    23401 aaaatgattg cgttaactgc tgattttgct gatcggcaag tgcctgttcg ctactgttta
    23461 acaagacgtc gtgaatggcc tgcgcattat tgatccccag ccgcacggtt agcggcaacg
    23521 tttctggttg cggagccagc accaccgctt cataccattt cgccagcgtg tcaccgatcc
    23581 ccgccagcag atattgttgc ggtgcattga ggataatctc cggttccacc agcaccataa
    23641 aattggcgtc gtcgaaaatc tcataatgca gcgcctgtcc ggcatcgtta taccagacgg
    23701 agagcggtgt ccaggcggcg caggtagcgg cgatcgtcgg aacggcaaca aatggcagac
    23761 cgagacggcg ggcgagggct ttcgcggtgt cgagcagtgc gccgccgccg acgccaatca
    23821 ccacgctgcg atcgtcaccg gactcagccg ccagttgctg tacatcgctt tcgctgcaat
    23881 gaccacgaaa caaaatatgc tttgcccctg gaagtccaaa cgctggcgga agtttggttt
    23941 gcgccacagc aatggcgcgt ttgccgtaga tccacaccgc gcgagaaagt tgttcatcag
    24001 tgaaaaaatc gttcaggtga ttgaaacttc ttggatgtga aaagtagtta gccgggccga
    24061 cgaccacgcg gataggattg tgaggcatgt tgtgttgtcc ttattgtttt atttagacat
    24121 ctaaacgtct tgattgccaa atactagcat cgtgttatag tgccttcaac acgcaacttc
    24181 gtcaggtaca ataaaaatga caaataaccc tctgattcca caaagcaaac ttccacaact
    24241 tggcaccact attttcaccc agatgagcgc gctggcgcag caacaccagg cgattaacct
    24301 gtcgcaaggc tttcctgatt ttgatggtcc gcgctattta caggagcggc tggcgtacca
    24361 cgttgcccag ggggcaaacc aatacgcgcc catgaccggc gtgcaggcct tgcgcgaggc
    24421 gattgctcag aaaacggaac gtttgtatgg ctatcaacca gatgccgata gcgatatcac
    24481 cgtaacggca ggggcgacgg aagcgttata cgcggcgatt accgcactgg tgcgcaatgg
    24541 cgatgaagtg atttgttttg atcccagcta tgacagttac gcccccgcca tcgcgctttc
    24601 tgggggaata gtgaagcgta tggcactgca accaccttga ctggcaggaa tttgccgcat
    24661 tattaagcga gcgcaccaga ctggtgatcc tcaacactcc gcataacccc agtgcaactg
    24721 tctggcagca ggctgatttc gccgctttgt ggcaggcgat cgccgggcac gagatttttg
    24781 tcattagcga tgaagtctac gagcacatca acttttcaca acagggccat gccagtgtgc
    24841 tggcgcatcc gcagctgcgt gagcgggcag tggcggtttc ttcatttggc aagatctatc
    24901 atatgaccgg ctggaaagtg ggttattgtg ttgcgccagc gcccatcagc gccgaaattc
    24961 gcaaggtaca tcagtatctg accttttcgg tgaatacccc ggcacagctg gcgcttgctg
    25021 atatgctacg tgcagaacct gagcattatc ttgcgttacc ggacttttat cgccagaagc
    25081 gcgatattct ggtgaatgct ttaaatgaaa gccggctgga gattttaccg tgtgaaggta
    25141 catacttttt gctggtggat tacagcgagg tttctaccct ggatgatgtt gagttttgcc
    25201 agtggctgac gcgggagcac ggcgtggcgg cgattccgct gtcggtgttt tgcgccgatc
    25261 ccttcccaca taaactgatt cgtctctgtt ttgccaagaa ggaatcgacg ttgctggcag
    25321 cagctgaacg cctgcgccag ctttagctat ttaaccgtcc aggcgcggga atattgacgg
    25381 tcggcaaaca actcttgcag gccgttaatt tgcttcaggc gcagcacttc gtcgctgtcc
    25441 attcccagct ctttgccaat tttattatcg tcccatccca actggctaag ttcacggacg
    25501 atttccgaca tggcggtgat ttgatggcgt ccacgagcgc gattatgacg aatagtcgcg
    25561 gcgatgcgtt gattacgcgt accttccaga caggtcaccg gcaaataacc ttttaagcgt
    25621 aattttaatg atgatgag
//
LOCUS       DADMHM010000041        25288 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.042, whole genome shotgun sequence.
ACCESSION   DADMHM010000041 DADMHM010000000
VERSION     DADMHM010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25288)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25288)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25288
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.042"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(221..691)
                     /locus_tag="JN125_001468"
     CDS             complement(221..691)
                     /locus_tag="JN125_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308538.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871296.1"
                     /translation="MTEIQRLLTETIESLNTREKRDNKPRFSISFIRKHPGLFIGMYV
                     AFFATLAVMLQSETLSGSVWLLVVLFILLNGFFFFDVYPRYRYEDIDVLDFRVCYNGE
                     WYNTRFVPAALVEAILNSPRVADVHKEQLQKMIVRKGELSFYDIFTLARAESTS"
     gene            complement(807..1358)
                     /gene="maa"
                     /locus_tag="JN125_001469"
     CDS             complement(807..1358)
                     /gene="maa"
                     /locus_tag="JN125_001469"
                     /EC_number="2.3.1.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose O-acetyltransferase"
                     /protein_id="HAY8871297.1"
                     /translation="MSTEKEKMIAGELYRSADETLSRDRLRARQLIHRYNHSLAEEHT
                     LRQQILADLFGQVTEAYIEPTFRCDYGYNIFLGNNFFANFDCVMLDVCPIRIGDNCML
                     APGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGA
                     VVTKGVPDNVVVGGNPARIIKKL"
     gene            complement(1530..1748)
                     /gene="hha"
                     /locus_tag="JN125_001470"
     CDS             complement(1530..1748)
                     /gene="hha"
                     /locus_tag="JN125_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin expression modulator Hha"
                     /protein_id="HAY8871298.1"
                     /translation="MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFY
                     SAADHRLAELTMNKLYDKIPSSVWKFIR"
     gene            complement(1774..2148)
                     /gene="tomB"
                     /locus_tag="JN125_001471"
                     /pseudo
     CDS             complement(1774..2148)
                     /gene="tomB"
                     /locus_tag="JN125_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001741190.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Hha toxicity modulator TomB"
     gene            complement(2694..5843)
                     /locus_tag="JN125_001472"
     CDS             complement(2694..5843)
                     /locus_tag="JN125_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit"
                     /protein_id="HAY8871299.1"
                     /translation="MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVT
                     ISASYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADI
                     AQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAA
                     NMKDAISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQ
                     LGGTPPVKGQQLNASIIAQTRLTSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYD
                     IIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVK
                     ISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINT
                     LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLS
                     AVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEG
                     KKGFFGWFNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPD
                     EDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNT
                     GIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKDAMVFAFNLPAIVELGTATGFDF
                     ELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNGLEDTPQFKIDIDQEKAQALG
                     VSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDIGDWYVRAADGQM
                     VPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASKLPTGVG
                     YDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALL
                     AATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRL
                     RPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVR
                     RRFSRKNEDIEHSHTVDHH"
     gene            complement(5866..7059)
                     /gene="acrA"
                     /locus_tag="JN125_001473"
     CDS             complement(5866..7059)
                     /gene="acrA"
                     /locus_tag="JN125_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit AcrA"
                     /protein_id="HAY8871300.1"
                     /translation="MNKNRGFTPLAVVLMLSGSLALTGCDDKQAQQGGQQMPAVGVVT
                     VKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQ
                     ATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAA
                     KAAVETARINLAYTKVTAPISGRIGKSNVTEGALVQNGQATALATVQQLDPIYVDVTQ
                     SSNDFLRLKQELANGTLKQENGKAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITL
                     RAIFPNPDHTLLPGMFVRARLEEGLNPNAILVPQQGVTRTPRGDATVLVVGADDKVET
                     RPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQVKAQEVTADNNQQAASGAQP
                     EQSKS"
     gene            7201..7848
                     /gene="acrR"
                     /locus_tag="JN125_001474"
     CDS             7201..7848
                     /gene="acrR"
                     /locus_tag="JN125_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter transcriptional
                     repressor AcrR"
                     /protein_id="HAY8871301.1"
                     /translation="MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVT
                     RGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVT
                     EERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMT
                     RRAAIIMRGYISGLMENWLFAPQSFDLKKEARDYVAILLEMYLLCPTLRNPATNE"
     gene            7976..11338
                     /gene="mscK"
                     /locus_tag="JN125_001475"
     CDS             7976..11338
                     /gene="mscK"
                     /locus_tag="JN125_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive channel MscK"
                     /protein_id="HAY8871302.1"
                     /translation="MTMFQYYKRSRHFVFSAFIAFVFVLLCQNTAFARASSNGDLPTK
                     ADLQAQLDSLNKQKDLSAQDKLEQQDLTDTLATLDKIDRIKEETVQLRQKVAEAPEKM
                     RQATAALTALSDVDNDEETRKILSTLSLRQLETRVAQALDDLQNAQNDLASYNSQLVS
                     LQTQPERVQNAMYNASQQLQQIRSRLDGTDVGETALRPSQKVLMQAQQALLNAEIDQQ
                     RKSLEGNTVLQDTLQKQRDYVTANSARLEHQLQLLQEAVNSKRLTLTEKTAQEAVSPD
                     EAARIQANPLVKQELEINQQLSQRLITATENGNQLMQQNIKVKNWLERALQSERNIKE
                     QIAVLKGSLLLSRILYQQQQTLPSADELENMTNRIADLRLEQFEVNQQRDALFQSDAF
                     VNKLEEGHTNEVNSEVHDALLQVVDMRRELLDQLNKQLGNQLMMAINLQINQQQLMSV
                     SKNLKSILTQQIFWVNSNRPMDWDWIKAFPQSLKDEFKSMKITVNWEKAWPAVFIAFL
                     AGLPLLLIAGLIHWRLGWLKAYQQKLASAVGSLRNDSQLNTPKAILIDLIRALPVCLI
                     ILAVGLILLTMQLNISELLWSFSKKLAIFWLVFGLCWKVLEKNGVAVRHFGMPEQQTS
                     HWRRQIVRISLALLPIHFWSVVAELSPLHLMDDVLGQAMIFFNLLLIAFLVWPMCRES
                     WRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSGRWIETVYLVIIWNLLYQ
                     TVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIALEQVNQQTLRITMLLM
                     FALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTMGSLLFAIIASMVA
                     WALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFGSLGVSWDKLQW
                     LAAALSVGLGFGLQEIFGNFVSGLIILFERPVRIGDTVTIGSFSGTVSKIRIRATTIT
                     DFDRKEVIIPNKAFVTERLINWSLTDTTTRLVIRLGVAYGSDLEKVRKVLLKAATEHP
                     RVMHEPMPEVFFTAFGASTLDHELRLYVRELRDRSRTVDELNRTIDQLCRENDINIAF
                     NQLEVHLHNEKGDEVTEVKRDYKGDDPTPAVG"
     gene            complement(11550..11711)
                     /gene="rsmS"
                     /locus_tag="JN125_001476"
     CDS             complement(11550..11711)
                     /gene="rsmS"
                     /locus_tag="JN125_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pleiotropic regulatory protein RsmS"
                     /protein_id="HAY8871303.1"
                     /translation="MSLENAPDDVKLAVDLIVLLEENQIPARTVLRALDIVKRDYEKK
                     LTRDDEAEK"
     gene            complement(11725..12252)
                     /gene="priC"
                     /locus_tag="JN125_001477"
     CDS             complement(11725..12252)
                     /gene="priC"
                     /locus_tag="JN125_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N''"
                     /protein_id="HAY8871304.1"
                     /translation="MKTALLLEKLEGQLATLRQRCAPVAQFATLSARFDRHLFQTRAT
                     TLQACLDEAGDNLAALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAP
                     PKIARWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCR
                     HALEKIENRLARLTR"
     gene            12322..12699
                     /locus_tag="JN125_001478"
                     /pseudo
     CDS             12322..12699
                     /locus_tag="JN125_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308548.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF454 family protein"
     gene            12852..13403
                     /gene="apt"
                     /locus_tag="JN125_001479"
     CDS             12852..13403
                     /gene="apt"
                     /locus_tag="JN125_001479"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HAY8871305.1"
                     /translation="MTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALS
                     IDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISETYDL
                     EYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFD
                     LGGEQRLEKQGITSYSLVPFPGH"
     gene            13532..15463
                     /gene="dnaX"
                     /locus_tag="JN125_001480"
     CDS             13532..15463
                     /gene="dnaX"
                     /locus_tag="JN125_001480"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HAY8871306.1"
                     /translation="MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFS
                     GTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVE
                     DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ
                     KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL
                     SLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGI
                     EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLI
                     GRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVLRQSFAPVAPTAVMTPTQVPPQ
                     PQSAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERL
                     ASVTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPE
                     LAAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNR
                     GAQQKLAEALSTLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNI
                     QTLRRFFDAELDEESIRPI"
     gene            15516..15845
                     /locus_tag="JN125_001481"
     CDS             15516..15845
                     /locus_tag="JN125_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001364632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HAY8871307.1"
                     /translation="MFGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKV
                     TINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLP
                     PGFKMPF"
     gene            15845..16450
                     /gene="recR"
                     /locus_tag="JN125_001482"
     CDS             15845..16450
                     /gene="recR"
                     /locus_tag="JN125_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HAY8871308.1"
                     /translation="MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLA
                     QALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQENGQICVVESPADIYAIEQTGQFS
                     GRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
                     CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF"
     gene            16560..18434
                     /gene="htpG"
                     /locus_tag="JN125_001483"
     CDS             16560..18434
                     /gene="htpG"
                     /locus_tag="JN125_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003903109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HAY8871309.1"
                     /translation="MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAAD
                     KLRFRALSNPDLYEGDGELCVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGT
                     KSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEG
                     EYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKREEKDG
                     ETVISWEKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTS
                     LLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNV
                     SREILQDSTVTRNLRNALTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDFAN
                     QEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELL
                     RKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKAL
                     TPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQKVPEVKY
                     IFELNPDHVLVKRAADTEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLVS
                     "
     gene            18615..19259
                     /gene="adk"
                     /locus_tag="JN125_001484"
     CDS             18615..19259
                     /gene="adk"
                     /locus_tag="JN125_001484"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HAY8871310.1"
                     /translation="MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSE
                     LGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGIN
                     VDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQ
                     EETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKILG"
     gene            19391..20353
                     /gene="hemH"
                     /locus_tag="JN125_001485"
     CDS             19391..20353
                     /gene="hemH"
                     /locus_tag="JN125_001485"
                     /EC_number="4.99.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HAY8871311.1"
                     /translation="MRQTKTGILLANLGTPDAPTPEAVKRYLKQFLSDRRVVDTSRLL
                     WWPLLRGVILPLRSPRVAKLYASVWMEGGSPLMVYSRQQQQALAQRLPETPVALGMSY
                     GSPSLESAVDELLAEHVDHIVVLPLYPQFSCSTVGAVWDELARILARKRSIPGISFIR
                     DYADNHDYINALANSVRASFAKHGEPDLLLLSYHGIPQRYADEGDDYPQRCRTTTREL
                     ASALGMAPEKVMMTFQSRFGREPWLMPYTDETLKMLGEKGVGYIQVMCPGFAADCLET
                     LEEIAEQNREVFLGAGGKKYEYIPALNATPEHIEMMANLVAAYR"
     gene            complement(20350..21309)
                     /gene="aes"
                     /locus_tag="JN125_001486"
     CDS             complement(20350..21309)
                     /gene="aes"
                     /locus_tag="JN125_001486"
                     /EC_number="3.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl esterase"
                     /protein_id="HAY8871312.1"
                     /translation="MKPENKLPVLDLISAEMKTVVNTLQPDLPSWPATGTIAEQRQYY
                     TLERRFWNAGAPEMATRAYMVPTKYGQVETRLFCPQPDSPATLFYLHGGGFILGNLDT
                     HDRIMRLLASYSQCTVIGIDYPLSPEARFPQAIEEIVAACCYFHQQAEDYQINMSRIG
                     FAGDSAGAMLALASALWLRDKQIDCGKIAGVLLWYGLYGLRDSVTRRLLGGVWDGLTQ
                     QDLQMYEEAYLSNDADRESPYYCLFNNDLTREVPPCFIAGAEFDPLLDDSRLLYQTLA
                     AHQQPCEFKLYPGTLHVFLHYSRMMKTADEALRDGAQFFTAQL"
     gene            21461..22765
                     /locus_tag="JN125_001487"
     CDS             21461..22765
                     /locus_tag="JN125_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015965517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inosine/guanosine kinase"
                     /protein_id="HAY8871313.1"
                     /translation="MKFPGKRKSKHYFPVNARDPLLQQFQPENETSAAWVVGIDQTLV
                     DIEAKVDDEFIERYGLSAGHSLVIEDDVAEALYQELKQKNLITHQFAGGTIGNTMHNY
                     SVLADDRSVLLGVMCSNIEIGSYAYRYLCNTSSRTDLNYLQGVDGPIGRCFTLIGESG
                     ERTFAISPGHMNQLRAESIPEDVIAGASALVLTSYLVRCKPGEPMPEATMKAIEYAKK
                     YNVPVVLTLGTKFVIAENPQWWQQFLKDHVSILAMNEDEAEALTGESDPLLASDKALD
                     WVDLVLCTAGPIGLYMAGFTEDEAKRKTQHPLLPGAIAEFNQYEFSRAMRHKDCQNPL
                     RVYSHIAPYMGGPEKIMNTNGAGDGALAALLHDITANSYHRSNVPNSSKHKFTWLTYS
                     SLAQVCKYANRVSYQVLNQHSPRLTRGLPEREDSLEESYWDR"
     gene            complement(22898..24574)
                     /locus_tag="JN125_001488"
     CDS             complement(22898..24574)
                     /locus_tag="JN125_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Kef family K(+) transporter"
                     /protein_id="HAY8871314.1"
                     /translation="MHHATPLITTIVGGLVLAFILGMLANKLRISPLVGYLLAGVLAG
                     PFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKAIAIPGAIAQIAVATLL
                     GMALSAVLGWSLMPGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLV
                     MVLTLVLLPAVAGMMEQGDVGFATLAVDMGITIGKVIAFIAIMMLVGRRLVPWIMARS
                     AATGSRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLP
                     LRDAFAVLFFVSVGMLFDPLILIQQPLAVLATLAIILFGKSLAAFFLVRLFGHSQRTA
                     LTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFALLEKYLA
                     KTKTLEEQTLEEAIEEEKQIPVDICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR
                     TRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGEIVASARAKNPD
                     IEIIARAHYDDEVAYITERGANQVVMGEREIARTMLELLETPPAGEVVTG"
     gene            complement(24812..>25288)
                     /locus_tag="JN125_001489"
     CDS             complement(24812..>25288)
                     /locus_tag="JN125_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8871315.1"
                     /translation="YYTFYLMQKFGLSIQNAQLHLFAFLFAVAAGTVIGGPVGDKIGR
                     KYVIWGSILGVAPFTLILPYASLHWTGVLTVIIGFILASALSAILVYAQELLPGRIGM
                     VSGLFFGFAFGMGGLGAAVLGLIADHTSIELVYKICAFLPLLGMLTIFLPDNRHKD"
BASE COUNT         6333 a         6570 c         6497 g         5888 t
ORIGIN      
        1 caatactgaa agaatcagta ctcccgaaat aaggccgacc agatgtcgtg ttctcaccag
       61 catatcctta ttaacacagt gtagggaaag tatatctgat tgtggaaaaa ggctggcagg
      121 agataaggag gtagagctgg tatttcatga agtgatgggt ggaaacgatc attgtcattt
      181 gaccaagcgc agagctttac gcctggtatg taaccctaac ttaagatgtt gattcggcgc
      241 gagcgagggt aaaaatatcg taaaaagaca gttcaccttt acggacgatc attttttgca
      301 gttgttcctt atgaacatcc gcgacacgcg gagagttcaa gatggcttca accagcgcgg
      361 caggtacaaa gcgcgtgttg taccattcgc cgttatagca aacgcggaaa tccagcacgt
      421 cgatatcttc atagcggtag cgtgggtaga catcgaaaaa gaagaaacca ttaagcagga
      481 taaataatac aaccagtagc cagacagagc ctgacagcgt ttcggactgc aacatcaccg
      541 ccagggtggc aaaaaaagca acgtacatac cgataaacag ccccggatgt ttacggataa
      601 aactgatact aaagcggggt ttgttgtcgc gtttttcgcg ggtattcaga gactcaatcg
      661 tttcggtcag caggcgttgt atttcggtca tcgtttgcct tcgtggtatc tgcaactttc
      721 cagggaacac cctattttaa cgtgggaata gtagagggga agtaacagat ctaccacaat
      781 tttgcataac agttgcgaaa aaccgattac aattttttaa ttattctggc tggattaccg
      841 cccacgacaa cgttgtccgg gacacctttt gtgacaactg cacctgaagc taccacgacg
      901 ttatcaccaa tggtcacacc agggttaatg accgcgcgtc cgccaatcca gacgttatta
      961 ccgatggtga cgggtttccc cagttcagca ccgctattac gtgctacagg gtcgatggga
     1021 tgtgttgccg tgtagatatg aacgcctggt gccaacatac agttatcacc gatgcgaata
     1081 gggcagacat caagcatcac gcaatcgaag ttggcgaaaa aattattgcc gagaaaaatg
     1141 ttatagccat aatcacagcg aaacgttggc tcaatataag cctctgtcac ctgaccgaat
     1201 aaatcagcga gaatttgctg gcgtaatgtg tgctcttccg ccagggaatg attgtatcgg
     1261 tgaataagct gacgagcgcg caggcgatcg cgagataacg tctcatctgc cgagcgatac
     1321 aactcaccag caatcatctt ttctttttct gtgctcatta ctgacctccg gttgctgaaa
     1381 atgcggcaac acagtaagac gaaaagtcag tgaacagaac gttcccatta catctgtgtg
     1441 ataaagatca catagggtat gtcttcatgg tgaaaaagta taaaattctt aataaacagc
     1501 cggttatagc tccgaaagcg aattatttat tagcgaataa atttccatac tgaggaaggg
     1561 atcttgtcgt atagtttatt catggtcaat tcggcgaggc ggtgatctgc ggctgagtaa
     1621 aataccgcca gttcattatc tgataattcg tatttatttt tctcgataac acgctccagc
     1681 gtgtcaattg tctggcaacg acgtaaacgc attaaataat cggttttcgt taaaggtttt
     1741 tcggacatac ttctacccat ggttgtaata attctaacaa gataaactcg caggattctc
     1801 tttcgtcgca ttgacaaaac aacggaatag tcgattacct gacttccgcc atttctgaag
     1861 atcctgcata ttaataccat aactactgaa caacataaag gtgtcatcca gatattcgtc
     1921 gatctgctca atgagcttat tgtcttcatt atacttaatt ttgtaattaa gtgcgaaggt
     1981 cgcaatatgc tcaatcagtt cattcaactg gaggttgatc gcctaggttg ggtcgttaac
     2041 ccagccataa ttgctttctt caaggtttgc aaggcagtca tgatacaggg tttcacagag
     2101 aaacttaagc tgtgcgatat catgtctttt gggtgagtat tcatccataa cgcgtcccct
     2161 tcttagcggt tgaactaacg gacacctttc gggatggaaa aaacttactg acctggactt
     2221 gccctctcgt ttgttagctt aactataagc cactctttgc aggttttcat cgcattatta
     2281 cgaaaaatta caattaggaa ggaatcggga caggacttac tttttcatac tagcactaac
     2341 ccgcagcagg taaaagcagt ttgctcgaac tgttcataac atttcaggat tatcgccaga
     2401 tgaaattggt gacactaata ccaggattgc tctgaatatg acgtaataac cgaggaatga
     2461 ataaagaatt accgcaaata attaagaata gcctctaaat gattatggat tattaaatct
     2521 attagcgcta cttaatataa attaactaac aatcagtatt ttttatgaat tttatccgtg
     2581 gttaatactg gttttcgtat gagatcctga gttggtggtt caattactcc ttaatgttcg
     2641 taggttatgc ataaaaaagg ccgcttgcgc ggccttagtg attacacgtt gtatcaatga
     2701 tgatcgacag tatggctgtg ctcgatatct tcattcttgc ggctaaagcg gcggcgaacc
     2761 accacaaaga ataccggaac gaagaagatt gccagtaccg ttgcggtcac catcccgccc
     2821 attacaccgg tacctactgc gttctgcgcg ccggaaccag caccagtact gataaccagc
     2881 ggcataacgc cgaggataaa cgccagcgag gtcatcagga tcggacgtaa acgcatccgc
     2941 actgcatcaa gcgtcgcttc aatcagacct ttaccttctt tatccatcaa gtctttggcg
     3001 aattcgacga taagtatcgc gttcttcgcc gacaacccaa tggttgtgag caggcctacc
     3061 tggaagtaaa cgtcattggt caggccacgg aaggtggcag ccagcaacgc accgataacc
     3121 cccagcggaa cgaccagcat aacggagaac ggaatcgacc agctctcgta cagcgccgcc
     3181 agacacagga atacgacaat caacgaaatc gcgtacagtg aaggtgcctg gttgccggag
     3241 aggcgttcct gataggacat ccccgtccag tcatagccaa caccggtagg cagtttgctc
     3301 gccagttgtt ccattagctc cattgcttca ccggtacttt tacccggtgc cgcctggcct
     3361 aagatttcca tggatggcag gccattgtaa cgttccagac gcggcgaacc gtactcccaa
     3421 cgagaagagg agaatgccga gaacggcacc atctgaccat cagcagcacg aacataccag
     3481 tcgccgatat catccggcag catacggtat ttcgcttctg acatgacgta aactttcttc
     3541 acacgaccgc ggtcgataaa gtcgttcaca tagctaccgc cccatgcagc gcccagagtg
     3601 gtgttaatgt cgttgataga aacacccagc gcctgcgctt tttcctggtc gatatcaatc
     3661 ttaaactgcg gggtatcttc cagaccgttt ggacgtacgc tggtcaacat atcaggatgc
     3721 tttgctgctt ctgcaagcag ctggttacgc gcctgagtca gtttttcgtg accaaggcca
     3781 gcctggtcaa tcagctcaaa gtcaaagccg gttgcagtac ccagttccac gattgcgggc
     3841 aggttaaagg cgaaaaccat cgcatctttg atttgcgaga aagcgcgtgt tgcacgcatg
     3901 gtaatcgctt caactttgtt ttcttcgccc ggacgatcgg cccagtcctt caaggaaacg
     3961 aacgcaatac cggtattctg accacgtccc gcaaagccga agccgttaac ggcgaacacc
     4021 gactcaacgt tgttcttttc tttggtcaga tagtaatgcg ttacctcatt gagcactttc
     4081 tgcgtacgtt cctgcgttgc acctgctggc agctgaacca tggtcataaa tacgccctgg
     4141 tcctcatctg gcaagaagga gcttggcaga cgcacgaaca gataggccat gccgaccacg
     4201 atgatcagat acagcaccag gtaacgcccc gtactgcgca gaataccgcc tacgctgtcg
     4261 gtgtagtggt gcgtgctctt ctcgaacatg cggttaaacc agccgaagaa gcctttttta
     4321 ccttccccgt gatcgccttt ggcaatcggt ttcagcatgg tggcacaaag agccggagtc
     4381 aggatcaacg ctaccagtac cgacagcgcc attgctgaaa caatggtaat agagaactga
     4441 cgatagatag caccagtaga accgccaaag aaggccatcg gtacgaatac cgctgacagt
     4501 accatcgcga taccgaccag agcgccctga atctgcccca tcgacttacg ggtagcttct
     4561 tttggcggca aaccttcttc cgccataaca cgctccacgt tttctaccac aacgatagcg
     4621 tcatccacca acaagccgat ggcgagcacc atcccgaaca ttgttagcgt gtttatcgag
     4681 aagccaaagg cggcaaggac ggcaaaggtc ccgagcaata ccaccggtac ggcaatggtc
     4741 ggaatcaacg tcgcgcggaa gttctgcagg aacagataca taaccaggaa cacgaggatg
     4801 atcgcttcga ccagcgtttt aaccacttcg tgaatagaga ttttcacgaa cggcgtggtg
     4861 tcgtacgggt aaacaatttt cagacccgac gggaagaacg gttccatctt cgccagttca
     4921 gcacggattg ccgcagcggt atccagcgca tttgcaccgg tcgccagctt gatccccaga
     4981 ccggaagccg gttggccgtt aaactctgcg atgatgtcgt agttctcacc acccagctca
     5041 atcttcgcca catcacgcag caggacgcgg gaaccatcct gattcacttt cagcaggatt
     5101 ttgccgaact cttcagtaga ggtcagacgc gtctgagcaa taatagaggc gttaagctgt
     5161 tggcctttca ccggcggcgt accaccgagc tgacccgccg caacctgggc gttctgcgct
     5221 ttgatggcgg taatgacatc aaccggcgtt agctggaatt tgttcagctc attcgggttc
     5281 atccagatac gcatcgcgta ctgtgaaccg aacaactgaa catcacccac gcccgacgta
     5341 cggctgatgg catctttcat attcgccgct acgtagtcag agatatcctc ctgcgtcatg
     5401 gtgccatcgg tgttgataac gccgacaacc atcaggaagc tgctggatga tttctcaacg
     5461 ctcacccctt gctgctgaac ttcttgcggc agcaacggca tcgccagctg cagtttgttc
     5521 tgcacctgaa cctgcgcgat atccgcatca gtaccagact caaaggtcag ggtgatctgc
     5581 acggtacccg tggagtcact gttagaggac atgtacatca ggttatcgat accgttcata
     5641 ttctgttcga taacctgtgt caccgtgtcc tgcactgttt tcgcatcagc gccggggtag
     5701 gaggcggaga tcgttactgc cggcggtgca atcgtaggat attgcgccac cggcagtttg
     5761 aggatcgcca gcccccctgc caacatgatg ataatggcga tcacccacgc aaaaatcggg
     5821 cgatcgataa agaaattagg catgtcttaa cggctcctgt ttaagttaag acttggactg
     5881 ttcaggctga gcaccgcttg cggcttgctg gttattatca gcggtaactt cttgtgcttt
     5941 tacctggaca ccaggacgca ctttctgcag cccacttatt actacgcgat cgcctgcttt
     6001 cagaccttct gtcaccagcc acttatcgcc aatagcctgg cttgcaacga tcggacgggt
     6061 ttccactttg tcatccgcgc caactaccag tacggtggca tcaccacgcg gcgtacgggt
     6121 tacgccctgt tgcgggacta aaatagcgtt tggattaagc ccttcttcca gacgtgcgcg
     6181 cacgaacata cccggcagca gagtgtgatc cgggttcggg aagatagcgc gtagggtgat
     6241 agacccagtg gtctgatcaa cggtaacgtc agagaattcc agcgtaccgt cctgcgggaa
     6301 cttaatgccg tcactggtga tcagcgacac tttggctttg ccgttctctt gtttcagcgt
     6361 gccattcgcc agttcctgtt tcaggcgcag gaagtcgttg ctggactggg tcacatcaac
     6421 gtagatcgga tcaagttgct gcacggttgc cagcgcagtc gcctgaccgt tctgtaccaa
     6481 tgcgccttcc gtcacgttcg acttaccaat gcgaccgcta atcggagcgg tgactttggt
     6541 gtaagccaga ttgatccgcg cagtttcaac ggcagctttc gccgcagtta ccgcagcatt
     6601 cgcctgttgc gcatcagcca gagcctgatc gtactcttgc ttactgatgt actgagtacc
     6661 gagcagtttc tgataacgat tcaccgtcaa ttgcgcgata ttggctgcag cctgggcttt
     6721 cgccagatca cctttcgcac tgtcgtatgt cgcctgatag gtcgcaggat caatctgata
     6781 gagagagaca ccagcttcga tgtcgctacc ttctttgaaa ttacgcttca ggataatccc
     6841 gctaacttga ggacgaactt ctgcgatccg gtaggcactg gtgcgacccg gaagctcggt
     6901 tgtgatctgc agaggttcag ttttgactgt tactacgcca acggcgggca tctgctggcc
     6961 accttgttgg gcctgtttgt cgtcacatcc tgttagggct aagctgcctg agagcatcag
     7021 aacgaccgcc agaggcgtaa accctctgtt tttgttcata tgtaaacctc gagtgtccga
     7081 tttcaaattg gtcaatggtc aaaagttaat aaacctattg ctgcgtttat attatcgtcg
     7141 tgctatggta catacattca caaatgtatg taaatctaac gcctgtaaat tcacgaacat
     7201 atggcacgaa aaaccaaaca agaagcgcaa gaaacgcgcc aacacatcct cgatgtggct
     7261 ctacgtcttt tctcacagca gggggtatca tccacctcgc tgggtgagat tgcaaaagca
     7321 gctggcgtta cgcgcggtgc aatctactgg cattttaaag acaagtcgga tttgttcagt
     7381 gagatctggg aactgtcaga atccaatatt ggtgaactag agcttgagta tcaggcaaaa
     7441 ttccctggcg atccactctc agtattaaga gagatattaa ttcatgttct tgaatccacg
     7501 gtgacagaag aacgacgtcg attattgatg gagattatat tccacaaatg cgaatttgtc
     7561 ggagaaatgg ctgttgtgca acaggcacaa cgtaatctct gtctggaaag ttatgaccgt
     7621 atagaacaaa cgttaaaaca ttgtattgaa gcgaaaatgt tgcctgcgga tttaatgacg
     7681 cgtcgggcag caattattat gcgcggctat atttccggcc tgatggaaaa ctggctcttt
     7741 gccccgcaat cttttgatct taaaaaagaa gcccgcgatt acgtcgccat cttactggag
     7801 atgtatctcc tgtgccccac gcttcgtaat cctgccacta acgaataacc ctgaatctga
     7861 ctccaggatt tttcctggac attttcgtcg ttgctattct ggttcactgc gtcgtgatat
     7921 tcttgcggtt tgactttttc aggtcgttct tcaggttcag aaaccttcat tcatcatgac
     7981 tatgttccag tattacaaac gatcacggca ttttgttttt tcagcattta ttgcttttgt
     8041 ttttgtcttg ttatgccaga acacggcgtt tgcgcgggcg tcatcgaatg gtgatctgcc
     8101 gacaaaagcg gacctgcagg cgcaacttga ctcactaaat aaacaaaaag atctttctgc
     8161 tcaggacaaa ctggagcagc aggatctgac agatacatta gccaccctcg ataaaatcga
     8221 tcgcataaaa gaagagacag ttcagctacg gcaaaaagtc gctgaagcgc cggaaaaaat
     8281 gcgccaggcg accgcggcgt taacagcact tagcgatgtc gataacgacg aagaaacgcg
     8341 caaaattctg agtacgcttt cgttgcgcca gctggaaact cgcgttgccc aggcgctgga
     8401 cgatttgcaa aacgcacaaa acgatctggc gtcttataac agccagctgg tttcgttaca
     8461 gacgcagccc gaacgcgtgc aaaatgcgat gtataacgct tcgcagcagc tgcaacaaat
     8521 tcgcagtcgt ctggatggga ctgatgtcgg cgagactgcc ttacgtccca gccagaaagt
     8581 gttaatgcag gctcagcagg cgttgctgaa tgcggagatt gaccagcagc gtaaaagcct
     8641 ggaagggaac accgtcttgc aggatacctt gcaaaagcaa cgtgattacg tgacggcgaa
     8701 cagcgcccgt ctggagcacc agttgcagct gttgcaagaa gcggtaaaca gcaagcgcct
     8761 gactttaact gaaaaaacgg cgcaggaagc cgtctccccg gatgaagccg cgcgtattca
     8821 ggctaatccg ctggtgaaac aggaactgga aattaaccag cagttaagtc agcgtctgat
     8881 taccgcgact gaaaacggta atcagttgat gcagcaaaac attaaagtca aaaactggct
     8941 ggagcgggcg ctgcaatcgg aacgcaatat taaagagcag attgccgtcc tgaagggcag
     9001 cctgctgttg tctcgtatcc tttaccagca acaacaaacg ctgccctcgg cggatgaact
     9061 ggaaaacatg accaaccgca tcgcggattt gcgtctcgaa cagtttgaag ttaaccagca
     9121 gcgtgatgca ctcttccaga gcgatgcgtt cgtcaacaaa ctggaagaag gtcacaccaa
     9181 cgaagtcaac agcgaagttc acgatgcgtt attgcaagtg gttgatatgc gtcgcgaatt
     9241 gctggatcaa ctcaacaaac agttgggtaa ccagctgatg atggccatta acctgcaaat
     9301 caaccagcag cagttaatga gcgtatcgaa aaacctgaaa tccatcctga ctcagcaaat
     9361 cttttgggtg aacagtaacc gtccaatgga ctgggactgg atcaaagcgt tcccgcaaag
     9421 cctgaaagat gaatttaagt cgatgaaaat cacggtgaac tgggaaaaag cctggcctgc
     9481 cgtttttatc gctttcctcg ccggtttgcc gctgctgttg attgccgggc tgatccactg
     9541 gcgtctgggc tggctgaaag cgtatcaaca aaaactggct tccgctgtgg gttccctgcg
     9601 taacgatagc cagctcaaca caccaaaagc gatccttatc gacctgatcc gcgcgctgcc
     9661 ggtgtgcctg attattctcg cggttggcct gattctgttg accatgcagc tcaacatcag
     9721 cgaactgcta tggtcgttca gcaaaaaact ggcgattttc tggctggtgt ttggcctgtg
     9781 ctggaaggta ctggagaaga acggcgttgc cgtgcgtcac ttcggcatgc cggaacagca
     9841 gaccagccac tggcgtcggc aaattgtccg catcagtctc gcattgctgc ctatccattt
     9901 ctggtctgtg gtggcagaac tttccccgct gcatctgatg gatgatgtgc tggggcaagc
     9961 gatgattttc ttcaacctgc tgctgattgc cttcctggta tggccaatgt gccgcgaaag
    10021 ctggcgtgat aaagagtcgc acaccatgcg actggtcacc attaccgtgc tgtcgattat
    10081 cccgattgca ttgatggtgc tgactgccac gggttatttc tacaccacgc tgcgcctctc
    10141 cgggcgttgg attgaaaccg tttatctggt gatcatctgg aacttgctct accagacggt
    10201 attgcgcggc ttaagcgtag cggcgcggcg tatcgcctgg cgtcgtgcgc tggcgcgtcg
    10261 gcagaatctg gtgaaagagg gcgcagaagg tgccgaaccg ccggaagaac ccaccattgc
    10321 actggaacag gttaaccagc agacgctgcg tattaccatg ttgctgatgt ttgcgctgtt
    10381 cggtgtcatg ttctgggcaa tttggtccga tttgatcacc gtgttcagct atctcgacag
    10441 cattacgctc tggcattaca acggtactga agctggcgct gcggtggtga aaaacgtcac
    10501 catgggcagt ctgttgtttg cgattatcgc ctcaatggtg gcctgggcgt tgattcgcaa
    10561 cctgcctggt ttgctggaag tgctggtgct ctcgcgactg aatatgcgcc agggcgcgtc
    10621 gtatgccatt actaccatcc ttaactacat cattattgcc gttggtgcga tgacggtgtt
    10681 cggatcgctg ggcgtctctt gggataaact ccagtggctg gcggcagcat tatccgtagg
    10741 tcttggtttt ggtttacaag aaattttcgg taacttcgtc tccggtttga tcattctgtt
    10801 cgaacgtccg gtgcgtattg gcgatacggt aaccattggt agcttctcgg ggacggtaag
    10861 taagatccgt attcgtgcga caacgattac cgatttcgat cgcaaagaag tgatcatccc
    10921 gaacaaagcg tttgttaccg agcgtctgat caactggtcg ttgactgaca ctactacgcg
    10981 tctggtgatc cgtctcggcg tggcctatgg ctccgatctg gaaaaagtgc gtaaagtgtt
    11041 actgaaggcg gcgactgagc acccaagggt gatgcacgaa ccaatgccgg aagtcttctt
    11101 tacggcgttt ggtgccagca cgttggatca tgagctgcgt ctgtatgtgc gtgaactgcg
    11161 tgaccgtagt cgtactgtcg atgagctgaa ccgtactatc gatcagctgt gccgtgaaaa
    11221 cgacatcaac attgccttta accagcttga agtgcatctg cacaacgaga agggcgatga
    11281 ggtgacggaa gtaaaacgcg actacaaagg cgatgacccg acgccagcgg tagggtaata
    11341 accaaagggg gcgacattta gttgccccga gattactgac aaagtgcgcg ttgttcatgc
    11401 cggatgcggc gtgaccgcct tatccggcct acgaaaccgc aagaattcaa tgtattgcag
    11461 gagcggtgta ggcctgataa gcgtagcgca tcaggcagtt ttgcgtttgc ccacaatctt
    11521 aggggacatt tagcggcccc atttatttct cacttttccg cctcatcatc gcgcgttaat
    11581 ttcttttcat aatcgcgttt tacaatatcc agcgcgcgca gcacggtgcg ggctgggatc
    11641 tgattttctt ccagcagcac aatcaaatcg acagccagtt tgacatcgtc aggggcattt
    11701 tccagtgaca tactctctcc attgctagcg ggttaagcgc gctagcctgt tttcgatttt
    11761 ttccagcgca tggcggcagc gtgccaggcg cgcttcatag gcttccactt cacgatgcag
    11821 cgtttgctgt tccacgagat cggtcacccg cgccaggcgg gctctgcgtt cggcaaccat
    11881 ctcacgtagc cgccgctcaa aatcctgatg ctgaatacgt ttacgctgcc agcgggcaat
    11941 tttcggtggc gcactgtccc actcgcgcaa tgaccaggcg gaggcttcac gcgcgatggc
    12001 ttccagttgt gccgccagat gttccgccag ccaggccact tgcggcagct gttgctgctc
    12061 aactgcatga cgaagcgcag ccagattatc gcccgcctca tcgagacaag cctgcagtgt
    12121 tgtcgcacgg gtttgaaaaa ggtgtctgtc aaaacgggca cttagcgtgg caaattgcgc
    12181 taccggggca caacgctgac gcagcgtagc gagctgtcct tccagttttt ccagcagcag
    12241 ggcggttttc acgataagac ctcaatgaaa atgataattg ttatgctaaa gtagccactc
    12301 tgtaagctga caacactcaa tatgcaacga atcattttaa tcatcattgg ctggctggcg
    12361 gtagtgctgg gtacgctggg cgtggtatta ccggtattac cgacgacgcc gtttatcctg
    12421 ctggcggcct ggtgctttgc ccgttcttcc ccgcgctttc acgcctggtt gctgtaccgc
    12481 tgatggtttg gcagctatct acgtttctgg cagaaacatc atgcgatgcc gcgcggcgtc
    12541 aaaccgcggg cgattttgct tattttgctc acgtttgcca tttctctgtg gttcgtccag
    12601 atgccatggg tgcgcatcat gttgctggta attctcgcct gtttgctttt ctatatgtgg
    12661 cgaattccgg tgattgatga aaagcaagaa aagcactgaa gcacaacaat cgcagttgca
    12721 attattgcgt acagccagta cattctggcg ttttcgagca caggcgcagg cggtcaaagg
    12781 ttaaacaact gttacttttg atacgtttaa aacgcgccgt gagtaccacc gtaacaagca
    12841 ggcatacact tatgaccgcg actgcacagc agcttgagta tctcaaaaat agcatcaaaa
    12901 gcattcagga ctacccaaaa cccggcattc ttttccgcga tgtcaccagc ttactggaag
    12961 acccgaaagc ttacgctctc agcatcgact tgctggttga gcgttacaaa aatgcgggca
    13021 ttaccaaagt tgtcggcacc gaagcgcgtg gcttcttgtt tggcgctccg gtagctctgg
    13081 gtctgggcgt tggctttgta ccggtccgta aaccgggcaa actgccgcgt gaaaccatca
    13141 gtgaaactta cgacctggaa tacggcaccg atcagctgga gatccacgtt gatgccatca
    13201 aaccgggcga caaagttctg gtggtggacg atctgctggc aaccggcggc actatcgaag
    13261 cgaccgttaa actgatccgt cgtctgggtg gtgaagtggc tgacgctgcg ttcattatca
    13321 acctgttcga tctcggcggc gaacagcgtc tcgaaaaaca gggcattacc agctacagcc
    13381 ttgtcccgtt cccgggccat taattatcgc cagtcttgtg ctgcccacgc tacggacagc
    13441 acaagatgtg cattcagcct cgccgttctg acggggctgt gttagcatta ccccttcgtg
    13501 aatccacctt ccagcgtttc agagcctgcc aatgagttat caggtcttag cccgaaaatg
    13561 gcgcccacaa acctttgctg acgtcgtcgg ccaggaacat gtgctgaccg cactggcgaa
    13621 cggcttgtcg ttagggcgta ttcatcatgc ttatcttttt tccggtaccc gtggcgtcgg
    13681 aaaaacctct atcgcccgac tgctggcgaa ggggctaaac tgcgaaaccg gcattaccgc
    13741 gacgccgtgc ggcgtgtgcg ataactgtcg tgaaatcgag caggggcgct ttgtcgatct
    13801 gattgaaatc gacgccgcct cgcgcaccaa agttgaagat acccgcgacc tgctggataa
    13861 cgtccagtac gctccggcgc gtggtcgttt caaagtttat ctgatcgacg aagtgcatat
    13921 gctgtcgcgc cacagcttta acgcactgtt aaaaaccctt gaagagccgc cggagcacgt
    13981 taagtttctg ctggcgacga ccgatccaca gaaattgccg gtgacgattt tgtcgcgctg
    14041 tttgcaattt catctcaagg cgctggatgt cgagcaaatt cgccatcaac ttgagcacat
    14101 cctcaacgaa gaacatatcg ctcacgagcc gcgggcgttg caattgctgg cgcgcgccgc
    14161 tgaaggcagc ctgcgagatg ccttaagtct gaccgaccag gcgattgcca gcggtgacgg
    14221 ccaggtttca acccaggcag tcagtgcgat gctgggtacg cttgatgacg atcaggcgct
    14281 gtcgctggtt gaagcgatgg tcgaggccaa cggcgagcgc gtaatggcgc tgattaatga
    14341 agccgctgcc cgtggtatcg agtgggaagc gttgctggtg gaaatgctcg gcctgttgca
    14401 tcgtattgcg atggtacaac tttcgcctgc tgcacttggc aacgacatgg ccgccattga
    14461 gctgcggatg cgtgaactgg cgcgcaccat accgccgacg gatattcagc tttactatca
    14521 gacgctgttg attggtcgca aagaattacc gtatgcgccg gaccgccgca tgggcgttga
    14581 gatgacgctg ctgcgcgcgc tggcgttcca tccacgtatg cctctgcctg agccagaagt
    14641 gctgcgccag tcctttgcac ccgtcgcgcc aacggcagta atgacgccaa cccaggtgcc
    14701 gccgcaaccg caatcagcgc cgcagcaggc accgactgta ccgctcccgg aaaccaccag
    14761 ccaggtgctg gcggcgcgcc agcagttgca gcgcgtgcag ggagcaacca aagcaaaaaa
    14821 gagtgaaccg gcagccgcta cccgcgcgcg gccggtgaat aacgctgcgc tggaaagact
    14881 ggcttcggtc accgatcgcg ttcaggcgcg tccggtgcca tcggcgctgg aaaaagcgcc
    14941 agccaaaaaa gaagcgtatc gctggaaggc gaccactccg gtgatgcagc aaaaagaagt
    15001 ggtcgccacg ccgaaggcgc tgaaaaaagc gctggaacat gaaaaaacgc cggaactggc
    15061 ggcgaagcta gcggcagaag ccattgagcg cgacccgtgg gcggcacagg tgagtcaact
    15121 ttcgctacca aaactggtcg aacaggtggc cttaaatgcc tggaaagagg agagcgacaa
    15181 cgcagtatgt ctgcatttgc gctcctctca gcggcatttg aacaaccgcg gtgcacagca
    15241 aaaactggct gaagcgttga gcacgttaaa aggttcaacg gttgaactga ctatcgttga
    15301 agatgataat cccgcggtgc gtacgccgct ggaatggcgt caggcgatat acgaagaaaa
    15361 acttgcgcag gcgcgcgagt ccattattgc ggataataat attcagaccc tgcgtcggtt
    15421 cttcgatgcg gagctggatg aagaaagtat ccgccccatt tgatcgtaag cacagcttac
    15481 gttcgtcatc cttaacgtga ttgagagaga aacctatgtt tggtaaaggc ggtctgggta
    15541 acctgatgaa gcaagcccag cagatgcaag aaaaaatgca gaaaatgcag gaagagatcg
    15601 cgcagctgga agtcaccggc gaatctggcg caggtctggt aaaagtgacc atcaacggtg
    15661 cacacaactg ccgtcgcgta gagatcgacc cgagcctgct ggaagacgac aaagagatgc
    15721 tggaagacct ggtggctgca gcattcaacg acgcagcacg tcgtattgaa gaaacgcaga
    15781 aagaaaaaat ggcctctgta tcctccggaa tgcagctgcc gcctggcttt aagatgccgt
    15841 tctgatgcaa accagcccgc tgttaacaca gcttatggaa gcactgcgct gtctgccggg
    15901 cgttggcccg aagtcggcgc agcgtatggc gttcacgctg cttcagcgcg atcgtagcgg
    15961 cgggatgcgt ctggcgcagg cgctcacccg ggcgatgtcg gaaatcggcc actgcgccga
    16021 ttgccgcact ttcaccgaac aggaagtctg taacatctgt tcgaatccgc gtcgtcagga
    16081 aaacggtcaa atctgtgtgg tggagagtcc ggcggacatc tacgccattg agcagacggg
    16141 gcagttttct ggtcgttatt ttgtgttgat ggggcatctg tcaccgctgg acggcatcgg
    16201 tccggatgat atcgggcttg accgtctgga acagcgtctg gcagaggaaa aaatcactga
    16261 agtgatcctc gccaccaatc ccacggttga aggtgaagct accgctaact acattgccga
    16321 gctttgcgcg caatatgacg tggaagccag ccgaatcgct catggcgtac cggttggcgg
    16381 cgaactggaa atggtcgatg gcaccacgct gtcacactcc cttgccgggc gtcataagat
    16441 tcgtttttaa gcaaacgaga gcaggatcac ctgctctcgc ttgaaattat tctcccttgt
    16501 ccccatctct ccctcatcct gtttttaacc ttaaaatggc attattgagg tagacctaca
    16561 tgaaaggaca agaaactcgt ggttttcagt cagaagtgaa acagcttctg cacctgatga
    16621 tccattctct ctattccaat aaagaaatct tcctgcgtga gcttatctct aacgcctccg
    16681 atgcggcgga caagctgcgt ttccgtgcgc tatctaaccc ggacctgtac gaaggtgatg
    16741 gcgaactgtg cgttcgtgtc tctttcgata aagacaagcg cacgctgacc atctccgata
    16801 acggcgtggg gatgacccgc gacgaagtga ttgaccatct ggggactatc gctaaatccg
    16861 gtaccaaatc attcctcgaa tccctgggtt ctgaccaggc gaaagacagc cagctgatcg
    16921 gtcagtttgg tgttggtttc tactctgcgt ttatcgtggc cgacaaagtg actgtgcgta
    16981 ctcgcgcggc aggcgaaaaa ccagaaaacg gcgtcttctg ggaatcggct ggcgaaggtg
    17041 aatataccgt tgccgacatc accaaagaag atcgtggtac tgaaatcacc ctgcatctgc
    17101 gtgaaggcga agacgagttc ctcgatgact ggcgcgtgcg ttccatcatc agcaaatact
    17161 ccgaccatat cgcgctgccg gtagagatcg aaaaacgcga agagaaagac ggcgaaaccg
    17221 ttatctcctg ggagaaaatc aacaaagcgc aggcgctgtg gactcgtaac aagtcggaaa
    17281 tcaccgatga agagtacaaa gagttctaca aacacatcgc ccacgacttt aatgatccgc
    17341 tgacctggag ccacaaccgc gttgaaggta agcaggagta caccagcctg ctgtacatcc
    17401 cgtcccaggc tccgtgggat atgtggaacc gtgatcataa acacggcctg aaactgtacg
    17461 tccagcgtgt gttcatcatg gacgacgcag aacagttcat gccgaactat ctgcgcttcg
    17521 tgcgtggtct gattgactcc agcgatctgc cgctgaacgt ttcccgtgaa atcctccagg
    17581 acagcacggt aacgcgtaac ctgcgcaatg cgctgaccaa gcgtgtgctg caaatgctgg
    17641 aaaaactggc gaaagacgac gcggaaaaat accagacctt ctggcaacag tttggcctgg
    17701 tactgaaaga aggtccggcg gaagatttcg ctaaccagga agcgatcgcc aaactgctgc
    17761 gttttgcttc tacccatacc gattcttctg cgcagaccgt atctctggaa gactacgttt
    17821 cccgcatgaa agaagggcag gagaaaatct actacatcac cgcagacagc tatgcggcag
    17881 cgaagagcag cccgcacctg gaactgctgc gtaagaaagg catcgaagtt ctgctgcttt
    17941 ccgaccgcat cgatgagtgg atgatgaact atctgactga gttcgacggt aaaccgttcc
    18001 agtcggtgtc taaagttgac gagtcgctgg aaaaactggc tgacgaagtt gatgagagcg
    18061 cgaaagaagc ggagaaagca ctgactccgt tcatcgaccg tgtgaaagcc ttgctcggcg
    18121 agcgcgtgaa agatgtccgt ctgactcacc gtctgaccga tacgccagcg atcgtttcga
    18181 ccgacgcgga cgaaatgagc actcagatgg cgaaactgtt cgctgcggcg ggccagaaag
    18241 tgccagaagt gaaatacatc ttcgaactga acccggatca cgtactggtg aaacgtgcgg
    18301 cagatactga agatgaagcg aagttcagcg agtgggtaga actgctgctg gatcaggcgc
    18361 tgctggcaga acgcggcacg ctggaagatc cgaacctgtt tattcgtcgt atgaaccagc
    18421 tgctggtttc ctgatgtcat gccggatgac ctttgtgtca tccggcattt ttcttttcat
    18481 catctgcact ttccgcaaat tatctcgcca ttaaccgttt cagcctcagg tgcctttctt
    18541 gaggcaatcg cctgttggtg gtatcgttta tcgctttttc aaaaaattcg acacatttta
    18601 aggggatttt cgcaatgcgt atcattctgc ttggcgctcc gggcgcgggg aaagggactc
    18661 aggctcagtt catcatggag aaatatggta ttccgcaaat ctccactggc gatatgctgc
    18721 gtgctgcggt caaatctggc tccgagctgg gtaaacaagc aaaagacatt atggatgctg
    18781 gcaaactggt caccgacgaa ctggtgatcg cgctggttaa agagcgcatt gctcaggaag
    18841 actgccgtaa tggtttcctg ttggacggct tcccgcgtac cattccgcag gcagacgcga
    18901 tgaaagaagc gggcatcaat gttgattacg ttctggaatt cgacgtaccg gacgaactga
    18961 ttgttgatcg tatcgtaggc cgccgcgttc atgcgccgtc tggtcgtgtt tatcacgtta
    19021 aattcaatcc gccgaaagta gaaggcaaag acgacgttac cggtgaagaa ctgactaccc
    19081 gtaaagacga tcaggaagaa accgtacgta aacgtctggt tgaataccat cagatgactg
    19141 caccgctgat cggctactac tccaaagaag cggaagcggg taacaccaaa tacgcgaaag
    19201 ttgacggcac caagccggtt gctgaagttc gcgctgatct ggaaaaaatc ctcggctaat
    19261 caagccgcag cagatctgct ttcgggcagg tctgctcatc cacctcaggc aatacctctc
    19321 acagcaatta gttcttcttc ctcacttttc cgctacaatt atcaacaagt tgaatcgata
    19381 agaggcggta atgcgtcaga ctaaaaccgg tatcctgctg gcaaacctgg gtacgcccga
    19441 tgcccccaca cctgaagcgg taaaacgcta tctgaaacaa tttttaagcg acagacgcgt
    19501 ggttgatacc tcacggttgt tatggtggcc attgctgcgc ggcgttattt tgccgctgcg
    19561 ctcgccgcgt gtggcgaagc tgtatgcctc tgtctggatg gaaggtggct cgccgctgat
    19621 ggtttacagc cgccagcaac agcaggcgct ggcacaacgt ttaccggaga cgcccgtagc
    19681 gctgggaatg agctacggct cgccatcact ggaaagcgcc gtcgatgaac tcctggcaga
    19741 gcatgtagat catattgtgg tgctgccgct ttatccgcaa ttctcctgtt ctacggtcgg
    19801 tgcggtatgg gatgaactgg cacgcattct ggcgcgcaaa cgtagcattc cggggatatc
    19861 gtttattcgt gattacgccg ataaccacga ttacattaat gcactggcga acagcgtacg
    19921 cgcttctttt gccaaacatg gcgaaccgga tctgctgctg ctctcttatc atggcattcc
    19981 ccagcgttat gcagatgaag gcgatgatta cccgcaacgt tgccgcacaa cgactcgcga
    20041 actggcttcc gcactgggga tggcaccgga aaaagtgatg atgacctttc agtcgcgctt
    20101 tggccgggaa ccctggctga tgccttatac cgacgaaacg ctgaaaatgc tcggagaaaa
    20161 aggcgtaggt tatatacagg tgatgtgccc gggctttgct gcggattgtc tggagacgct
    20221 ggaagagatt gccgagcaaa accgtgaggt cttcctcggt gccggtggga aaaaatatga
    20281 atatattcca gcgcttaatg ccacgccaga acatatcgaa atgatggcta atcttgttgc
    20341 cgcgtatcgc taaagctgag cggtaaagaa ctgagcgccg tcgcgaagag cctcgtcggc
    20401 ggttttcatc attcgtgaat aatgcaaaaa gacatgcagc gtacctgggt agagtttgaa
    20461 ctcacagggc tgctgatgcg ccgctaacgt ctggtaaagc agacggctgt catccagcag
    20521 cggatcgaac tccgccccgg caataaaaca gggcggaact tcgcgagtga gatcattatt
    20581 aaacagacag taatacggtg actcgcggtc cgcgtcgttg cttaaatacg cctcttcata
    20641 catctgcaaa tcctgttgcg ttaagccatc ccagacaccg cccaacagac gacgagtcac
    20701 ggaatcccgt aatccgtaaa gcccatacca cagcaaaaca cccgcaattt taccgcaatc
    20761 gatctgttta tcacgcaacc acaacgcact ggcgagcgcc agcatggcac ctgcggaatc
    20821 accggcaaag ccaatgcggg acatattgat ttgataatcc tccgcctgct ggtggaaata
    20881 acaacaagca gccacaattt cctctatcgc ttgcggaaaa cgcgcttcag gtgaaagggg
    20941 gtaatcaata ccaatcaccg tacattggct gtagcttgcc agcaggcgca tgatgcgatc
    21001 gtgggtatcg agattgccga gaataaaacc gcctccatgc aaataaaata gcgtcgccgg
    21061 gctatctggc tgcggacaaa agagacgtgt ttccacctgc ccatattttg ttggaaccat
    21121 gtaagctctg gttgccattt ctggagcgcc cgcattccag aatcggcgct caagcgtgta
    21181 atactgtcgt tgctcagcaa tcgttcccgt tgcgggccag gacggtaaat ccggctgaag
    21241 agtattcaca acggtcttca tttcagcaga aataaggtcc agaacaggta gtttgttttc
    21301 cggcttcata caaaaactcc tttcaaatta cgtcattgta aggaaccact gccatgaaaa
    21361 tgcgatcccg cctgctgata ttgaaactgg ctgcgtctcg cgcgctcccg tcagattgtg
    21421 ttaacattcg ccgctcagtt aaccacccgt aaaaacaacc atgaaatttc ccggtaaacg
    21481 taaatccaaa cattacttcc ctgtaaatgc acgcgatccg ctgcttcagc aattccagcc
    21541 agaaaacgaa accagcgccg cctgggtcgt aggtattgac cagacgctgg tcgatattga
    21601 agcgaaagtg gatgatgaat tcattgagcg ttatggatta agcgccgggc attcactggt
    21661 gattgaggat gacgtagccg aagcgcttta tcaggagcta aaacagaaaa acctgattac
    21721 ccatcagttt gcgggtggca ccattggtaa caccatgcac aactactcgg tgctcgcgga
    21781 cgaccgttcg gtgctgctgg gcgtcatgtg cagcaatatt gaaattggca gttatgccta
    21841 tcgttacctg tgtaacactt ccagccgtac cgatcttaac tatctacaag gcgtggatgg
    21901 cccgattggt cgttgcttta cgctgattgg cgagtccggg gaacgtacct ttgctatcag
    21961 tccaggccac atgaaccagc tgcgggctga aagcattccg gaagatgtga ttgccggagc
    22021 ctcggcactg gttctcacct cttatctggt gcgttgcaaa ccgggtgaac ccatgccgga
    22081 agcaaccatg aaagccattg agtacgcgaa gaaatataac gtaccggtgg tgctgacgct
    22141 gggcaccaag tttgtcattg ccgagaatcc gcagtggtgg cagcaattcc tcaaagatca
    22201 cgtctctatc cttgcgatga acgaagatga agccgaagcg ttgaccggag aaagcgatcc
    22261 gttgttggca tctgacaagg cgctggactg ggtagatctg gtgctgtgca ccgccgggcc
    22321 aatcggcttg tatatggcgg gctttaccga agacgaagcg aaacgtaaaa cccagcatcc
    22381 gctgctgccg ggcgctatag cggaattcaa ccagtatgag tttagccgcg ccatgcgcca
    22441 caaggattgc cagaatccgc tgcgtgtata ttcgcacatt gcgccgtaca tgggagggcc
    22501 ggaaaaaatc atgaacacta atggagcggg ggatggcgca ttggcagcgt tgctgcatga
    22561 cattaccgcc aacagctacc atcgtagcaa cgtaccaaac tccagcaaac ataaattcac
    22621 ctggttaact tattcatcgt tagcgcaggt gtgtaaatat gctaaccgtg tgagctatca
    22681 ggtactgaac cagcattcac ctcgtttaac gcgcggcttg ccggagcgtg aagacagcct
    22741 ggaagagtct tactgggatc gttaagttat cgtcggttcg taggccagat aaggcgttca
    22801 cgccgcatct ggcatttggc tctcgatgcc tgatgcgacg ctggcgcgtc ttatcatgcc
    22861 tacatatttt tcatatttta catccggcaa ccaccgttta ccccgtcacc acctcacccg
    22921 ccggtggcgt ttccagcagt tccagcatgg tacgggcgat ttcacgctcg cccatcacta
    22981 cctgattcgc accacgttcg gtgatatacg ccacttcatc gtcataatgg gcgcgggcaa
    23041 taatctcaat atccggattt ttcgcgcggg cagatgccac aatctcaccc gcttcataac
    23101 cgttgggaat cgtcaggatc agccattttg cacattccag atgcgccagt tgcataattt
    23161 cttcgttcgc cgcattgccc aatactgcgc ggaccccgcg ctctcgcagc tcatcaacac
    23221 gggttcgtga cgtctcaatc accaccagcg gaatatcaga ggcgagcaat ttctccccca
    23281 gcaggctgcc tacacgaccg taacccacca gtagcgcatg gttgcaaata tccactggga
    23341 tctgcttctc ttcttcgatt gcctcttcca gcgtctgctc ttccagcgtt ttggtcttcg
    23401 ccagatattt ctccagtagt gcgaacagta ccgggttgag cataatcgac aggatcgccc
    23461 ctgccagtac caggttttgt ccggcctgcg gcagtaaatt caatgccatt cccagtcccg
    23521 ccaggataaa cgcgaactca ccaatctgcg ccaggctggc ggcgatggtt aatgccgtac
    23581 gttgggagtg accaaacagt cgcaccagga aaaatgcggc taacgactta ccaaacagaa
    23641 taatcgccag cgtcgccagc actgccagcg gttgctgaat cagaattaac ggatcaaaca
    23701 acatcccgac ggagacaaaa aacagcaccg caaacgcgtc gcgcaatggc agcgtatcgt
    23761 gggcggcacg gtgactcagt tcagactcgt tcagtaccat cccggcaaag aacgcaccga
    23821 gtgcaaagga gacatcaaac agctctaccg caccaaaggc aatccctaac gccagcgcca
    23881 gcaccgacag ggtaaacagc tcgcgagaac cggttgccgc gctgcgtgcc ataatccacg
    23941 gcaccagacg gcgacctacc agcatcataa tggcgataaa tgcgatcact ttgccgatgg
    24001 tgatccccat atcgactgca agagtggcaa agcccacatc gccctgttcc atcattcctg
    24061 ccactgcggg cagcaacacc agcgtcagaa ccattaccag gtcttccaca atcaaccaac
    24121 cgatggcgat ttgcccacgc tgactgtcaa ttaattgccg ttcttcaagt gcgcgcagta
    24181 acaccacggt actggcggtg gaaagacata aaccgaacac gataccgggc attaacgacc
    24241 agcccagcac ggcagagagc gccataccca gcagcgtcgc cacggctatc tgggcgatcg
    24301 caccgggaat ggcgatggcc tttaccgcca tcaaatcctt cagcgaaaag tgcaaaccga
    24361 cgccaaacat caacagaatg acgcccagtt cagccagttc cggcgcaagc ttggtatcgg
    24421 caacaaagcc cggagtgaat ggtcctgcca gcacacccgc taacagatat cccaccagag
    24481 gagaaatacg tagtttattg gccagcatgc cgaggataaa ggcgagcaca aggccgccaa
    24541 caatggtggt gataagcggg gtggcgtgat gcattccgtc tccttttcct ggtggttatt
    24601 gtccattttt ggccgggaaa accaaaatta caggtaatag tttatgacaa tttcattgat
    24661 gatgttcatg aataattatt gaattttgca gaaaaatgga attagctgca aaaaaagcac
    24721 ggttcggaaa acagaaggcg gtttaacaga ggaaaggctt atggcgactg taaaacgatg
    24781 cagccaaagt ttgcctttgg ctgcaatgaa atcagtcttt atgccggtta tcaggcagga
    24841 atatggtcaa catccccaat agtggcagga aagcacagat tttatagact aactcgatgc
    24901 tggtgtgatc ggcgataagc cccagaactg ccgctcccag acctcccatg ccaaaagcaa
    24961 aaccgaaaaa gagtccagaa accataccga tacgtcccgg aagtagctcc tgagcgtaga
    25021 ccagaatggc agataatgcc gaagcgagga taaatccaat aatcaccgtt aaaacccccg
    25081 tccagtgcag gctggcgtag ggtaaaatca gcgtaaacgg cgcaacgccg aggatagagc
    25141 cccaaatcac atatttccgt ccaattttat cccctacagg cccgccgatc actgtacctg
    25201 ccgcaacggc aaacaggaag gcaaacagat gaagctgggc attctggata gataatccga
    25261 atttttgcat cagataaaag gtgtaata
//
LOCUS       DADMHM010000042        25247 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.043, whole genome shotgun sequence.
ACCESSION   DADMHM010000042 DADMHM010000000
VERSION     DADMHM010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25247)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25247)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25247
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.043"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..402)
                     /locus_tag="JN125_001490"
     CDS             complement(<1..402)
                     /locus_tag="JN125_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HAY8871316.1"
                     /translation="MDTTLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFY
                     QVCHPDGLADALWGTIVGYGTFAVIYWGYRILRHKEGLGYGDVKFLAALGAWHSWAFL
                     PRLVFLAASFACGAVVIGLLMRGKESLKNPLP"
     gene            781..1092
                     /gene="rpsJ"
                     /locus_tag="JN125_001491"
     CDS             781..1092
                     /gene="rpsJ"
                     /locus_tag="JN125_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014268624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HAY8871317.1"
                     /translation="MQNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPT
                     RKERFTVLISPHVNKDARDQYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISL
                     G"
     gene            1125..1754
                     /gene="rplC"
                     /locus_tag="JN125_001492"
     CDS             1125..1754
                     /gene="rplC"
                     /locus_tag="JN125_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000579825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HAY8871318.1"
                     /translation="MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDG
                     YRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFA
                     DVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKK
                     MAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAVKA"
     gene            1765..2370
                     /gene="rplD"
                     /locus_tag="JN125_001493"
     CDS             1765..2370
                     /gene="rplD"
                     /locus_tag="JN125_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010304939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HAY8871319.1"
                     /translation="MELVLKDAQSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTR
                     AQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYR
                     GALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITGELDENLFLA
                     ARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEMLA"
     gene            2367..2669
                     /gene="rplW"
                     /locus_tag="JN125_001494"
     CDS             2367..2669
                     /gene="rplW"
                     /locus_tag="JN125_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007891652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HAY8871320.1"
                     /translation="MIREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIK
                     AAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE"
     gene            2687..3508
                     /gene="rplB"
                     /locus_tag="JN125_001495"
     CDS             2687..3508
                     /gene="rplB"
                     /locus_tag="JN125_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001738551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HAY8871321.1"
                     /translation="MAVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRN
                     NNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERR
                     YILAPKGLKAGDQIQSGVDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGT
                     YVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRP
                     TVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTKGKKTRSNKRTDKFIVRRRSK"
     gene            3525..3803
                     /gene="rpsS"
                     /locus_tag="JN125_001496"
     CDS             3525..3803
                     /gene="rpsS"
                     /locus_tag="JN125_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HAY8871322.1"
                     /translation="MPRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNM
                     IGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK"
     gene            3818..4150
                     /gene="rplV"
                     /locus_tag="JN125_001497"
     CDS             3818..4150
                     /gene="rplV"
                     /locus_tag="JN125_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000447526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HAY8871323.1"
                     /translation="METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAA
                     VLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSH
                     ITVVVSDR"
     gene            4168..4869
                     /gene="rpsC"
                     /locus_tag="JN125_001498"
     CDS             4168..4869
                     /gene="rpsC"
                     /locus_tag="JN125_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000529946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HAY8871324.1"
                     /translation="MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLT
                     KELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQIN
                     IAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGA
                     EIARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVKVWIFKGEILGGMAAVEQPE
                     KPAAQPKKQQRKGRK"
     gene            4882..5292
                     /gene="rplP"
                     /locus_tag="JN125_001499"
     CDS             4882..5292
                     /gene="rplP"
                     /locus_tag="JN125_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017805229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HAY8871325.1"
                     /translation="MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTAR
                     QIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVL
                     YEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM"
     gene            5292..5483
                     /gene="rpmC"
                     /locus_tag="JN125_001500"
     CDS             5292..5483
                     /gene="rpmC"
                     /locus_tag="JN125_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000644743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HAY8871326.1"
                     /translation="MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLK
                     QVRRDVARVKTLLNEKAGA"
     gene            5483..5737
                     /gene="rpsQ"
                     /locus_tag="JN125_001501"
     CDS             5483..5737
                     /gene="rpsQ"
                     /locus_tag="JN125_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006817275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HAY8871327.1"
                     /translation="MTDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKL
                     HVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL"
     gene            5902..6273
                     /gene="rplN"
                     /locus_tag="JN125_001502"
     CDS             5902..6273
                     /gene="rplN"
                     /locus_tag="JN125_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013975775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HAY8871328.1"
                     /translation="MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIK
                     EAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGP
                     VTRELRSEKFMKIISLAPEVL"
     gene            6284..6598
                     /gene="rplX"
                     /locus_tag="JN125_001503"
     CDS             6284..6598
                     /gene="rplX"
                     /locus_tag="JN125_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000729185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HAY8871329.1"
                     /translation="MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKK
                     HQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSET
                     IK"
     gene            6613..7152
                     /gene="rplE"
                     /locus_tag="JN125_001504"
     CDS             6613..7152
                     /gene="rplE"
                     /locus_tag="JN125_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001096198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HAY8871330.1"
                     /translation="MAKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAI
                     ADKKLLDNAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFER
                     LITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTA
                     KSDEEGRALLAAFDFPFRK"
     gene            7167..7472
                     /gene="rpsN"
                     /locus_tag="JN125_001505"
     CDS             7167..7472
                     /gene="rpsN"
                     /locus_tag="JN125_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005599304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HAY8871331.1"
                     /translation="MAKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNA
                     VLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW"
     gene            7506..7898
                     /gene="rpsH"
                     /locus_tag="JN125_001506"
     CDS             7506..7898
                     /gene="rpsH"
                     /locus_tag="JN125_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011148781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HAY8871332.1"
                     /translation="MSMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEG
                     FIEDFKVEGDTKPELELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIA
                     VVSTSKGVMTDRAARQAGLGGEIICYVA"
     gene            7911..8444
                     /gene="rplF"
                     /locus_tag="JN125_001507"
     CDS             7911..8444
                     /gene="rplF"
                     /locus_tag="JN125_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003031129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HAY8871333.1"
                     /translation="MSRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVK
                     HADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNV
                     INLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGK
                     GVRYADEVVRTKEAKKK"
     gene            8454..8807
                     /gene="rplR"
                     /locus_tag="JN125_001508"
     CDS             8454..8807
                     /gene="rplR"
                     /locus_tag="JN125_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HAY8871334.1"
                     /translation="MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNG
                     SEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGR
                     VQALADAAREAGLQF"
     gene            8822..9325
                     /gene="rpsE"
                     /locus_tag="JN125_001509"
     CDS             8822..9325
                     /gene="rpsE"
                     /locus_tag="JN125_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004106339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HAY8871335.1"
                     /translation="MAHIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNG
                     RVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEG
                     TGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKS
                     VEEILGK"
     gene            9329..9508
                     /gene="rpmD"
                     /locus_tag="JN125_001510"
     CDS             9329..9508
                     /gene="rpmD"
                     /locus_tag="JN125_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012147215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HAY8871336.1"
                     /translation="MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAI
                     RGMINAVSFMVKVEE"
     gene            9512..9946
                     /gene="rplO"
                     /locus_tag="JN125_001511"
     CDS             9512..9946
                     /gene="rplO"
                     /locus_tag="JN125_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011095501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HAY8871337.1"
                     /translation="MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGG
                     GVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIG
                     IQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE"
     gene            9954..11285
                     /gene="secY"
                     /locus_tag="JN125_001512"
     CDS             9954..11285
                     /gene="secY"
                     /locus_tag="JN125_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004868351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HAY8871338.1"
                     /translation="MAKQPGLDFQSAKGGLGELKRRLLFVIGALIVFRIGSFIPIPGI
                     DAAVLAKLLEQQRGTIIEMFNMFSGGALSRASIFALGIMPYISASIIIQLLTVVHPTL
                     AEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTA
                     VVSLVTGTMFLMWLGEQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFL
                     VLLLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIP
                     AIFASSIILFPATIASWFGGGTGWNWLTTISLYLQPGQPLYVLLYASAIIFFCFFYTA
                     LVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLVGALYITFICLIPEFMR
                     DAMKVPFYFGGTSLLIVVVVIMDFMAQVQTLMMSSQYESALKKANLKGYGR"
     gene            11317..11433
                     /gene="rpmJ"
                     /locus_tag="JN125_001513"
     CDS             11317..11433
                     /gene="rpmJ"
                     /locus_tag="JN125_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020322760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HAY8871339.1"
                     /translation="MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG"
     gene            11580..11936
                     /gene="rpsM"
                     /locus_tag="JN125_001514"
     CDS             11580..11936
                     /gene="rpsM"
                     /locus_tag="JN125_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018356918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HAY8871340.1"
                     /translation="MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVK
                     ISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRT
                     KTNARTRKGPRKPIKK"
     gene            11953..12342
                     /gene="rpsK"
                     /locus_tag="JN125_001515"
     CDS             11953..12342
                     /gene="rpsK"
                     /locus_tag="JN125_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HAY8871341.1"
                     /translation="MAKAPIRARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGW
                     ATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNA
                     AGFRITNITDVTPIPHNGCRPPKKRRV"
     gene            12376..12996
                     /gene="rpsD"
                     /locus_tag="JN125_001516"
     CDS             12376..12996
                     /gene="rpsD"
                     /locus_tag="JN125_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004410410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HAY8871342.1"
                     /translation="MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR
                     KPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVV
                     YRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE
                     LAEQREKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK"
     gene            13022..14011
                     /gene="rpoA"
                     /locus_tag="JN125_001517"
     CDS             13022..14011
                     /gene="rpoA"
                     /locus_tag="JN125_001517"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005970247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HAY8871343.1"
                     /translation="MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALR
                     RILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTL
                     NKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIH
                     SEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIR
                     RAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIH
                     YIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIADE"
     gene            14052..14435
                     /gene="rplQ"
                     /locus_tag="JN125_001518"
     CDS             14052..14435
                     /gene="rplQ"
                     /locus_tag="JN125_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HAY8871344.1"
                     /translation="MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKEL
                     RRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGF
                     RAGDNAPMAYIELVDRSEKAEAAAE"
     gene            14542..14910
                     /locus_tag="JN125_001519"
     CDS             14542..14910
                     /locus_tag="JN125_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1992 domain-containing protein"
                     /protein_id="HAY8871345.1"
                     /translation="MWLLDQWAERHIAEAQAKGEFDNLAGSGEPLILDDDSHVPPELR
                     AGYRLLKNAGCLPPELEQRREAIQLLDILRGIRHDDPQYQEVSRRLSLLELKLRQAGL
                     STDFLRGDYADKLLDKINDN"
     gene            14921..15346
                     /gene="zntR"
                     /locus_tag="JN125_001520"
     CDS             14921..15346
                     /gene="zntR"
                     /locus_tag="JN125_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn(2+)-responsive transcriptional regulator"
                     /protein_id="HAY8871346.1"
                     /translation="MYRIGELAKMAEVTPDTIRYYEKQQMMEHEVRTEGGFRLYTESD
                     LQRLKFIRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQS
                     MQRSLQRLNDACCGTAHSSVYCSILEALEQGASGVKSGC"
     gene            15402..15620
                     /gene="arfA"
                     /locus_tag="JN125_001521"
     CDS             15402..15620
                     /gene="arfA"
                     /locus_tag="JN125_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome alternative rescue factor ArfA"
                     /protein_id="HAY8871347.1"
                     /translation="MSRYQHTKGQIRDNAIEALLHDPLFRQRVEKNKKGKGSYMRKGK
                     HGNRGNWEASGKKVNHFFTTGLLLSGAC"
     gene            complement(15617..16027)
                     /gene="mscL"
                     /locus_tag="JN125_001522"
     CDS             complement(15617..16027)
                     /gene="mscL"
                     /locus_tag="JN125_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large-conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HAY8871348.1"
                     /translation="MSIIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPP
                     LGLLIGGIDFKQFAVTLRDAQGDIPAVVMHYGVFIQNVFDFLIVAFAIFMAIKLINKL
                     NRKKEEPAAAPAPTKEEVLLAEIRDLLKEQNNRS"
     gene            complement(16157..17533)
                     /gene="trkA"
                     /locus_tag="JN125_001523"
     CDS             complement(16157..17533)
                     /gene="trkA"
                     /locus_tag="JN125_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004125888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkA"
                     /protein_id="HAY8871349.1"
                     /translation="MKIIILGAGQVGGTLAENLVGENNDITVVDTNGERLRTLQDKFD
                     LRVVQGHGSHPRVLREAGADDADMLVAVTSSDETNMVACQVAYSLFNTPNRIARIRSP
                     DYVRDADKLFHSDAVPIDHLIAPEQLVIDNIYRLIEYPGALQVVNFAEGKVSLAVVKA
                     YYGGPLIGNALSTMREHMPHIDTRVAAIFRHDRPIRPQGSTIVEAGDEVFFIAASQHI
                     RAVMSELQRLEKPYKRIMLVGGGNIGAGLARRLEKDYSVKLIERNQQRAAELAEKLQN
                     TIVFFGDASDQELLAEEHIDQVDLFIAVTNDDEANIMSAMLAKRMGAKKVMVLIQRRA
                     YVDLVQGSVIDIAISPQQATISALLSHVRKADIVGVSSLRRGVAEAIEAVAHGDESTS
                     RVVGRVIDEIKLPPGTIIGAVVRGNDVMIANDNLRIEQGDHVIMFLTDKKFITDVERL
                     FQPSPFFL"
     gene            complement(17555..18844)
                     /gene="rsmB"
                     /locus_tag="JN125_001524"
     CDS             complement(17555..18844)
                     /gene="rsmB"
                     /locus_tag="JN125_001524"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HAY8871350.1"
                     /translation="MKKQRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALL
                     QELCFGVLRTLSQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAET
                     VEGAIAIKRPQLKGLINGVLRQFQRQQEELLAKFNASDARYLHPSWLLKRLQKAYPEQ
                     WQSIVEANNQRPPMWLRVNRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVH
                     ALPGFEDGWVTVQDASAQGCMTWLAPQNSEHILDLCAAPGGKTTHILEVAPEAQVVAV
                     DIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRHH
                     PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQR
                     TADAELCETGAPEQPGKQNLPGAEEGDGFFYAKLIKK"
     gene            complement(18890..19837)
                     /gene="fmt"
                     /locus_tag="JN125_001525"
     CDS             complement(18890..19837)
                     /gene="fmt"
                     /locus_tag="JN125_001525"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HAY8871351.1"
                     /translation="MSESLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRG
                     KKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVADLQADVMVVVAYGLILPKAVLEM
                     PRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPIT
                     AEDTSGTLYDKLAELGPQGLITTLKQLADGTAKPEVQDKTLVTYAEKLSKEEARIDWS
                     LSAAQLERCIRAFNPWPMSWLEIERQPVKVWKASVIDTATNAAPGTILEANKQGIQVA
                     TGDGILNLLSLQPAGKKAMSAQDLLNSRREWFVPGNRLA"
     gene            complement(19852..20361)
                     /gene="def"
                     /locus_tag="JN125_001526"
     CDS             complement(19852..20361)
                     /gene="def"
                     /locus_tag="JN125_001526"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HAY8871352.1"
                     /translation="MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEG
                     IGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGCLSIPKQRALVP
                     RAEKVKIRALDRDGKPFELEADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVE
                     KLDRLKARA"
     gene            20491..21615
                     /gene="dprA"
                     /locus_tag="JN125_001527"
                     /pseudo
     CDS             20491..21615
                     /gene="dprA"
                     /locus_tag="JN125_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026211.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
     gene            21587..22060
                     /locus_tag="JN125_001528"
     CDS             21587..22060
                     /locus_tag="JN125_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF494 domain-containing protein"
                     /protein_id="HAY8871353.1"
                     /translation="MFDVLMYLFETYIHTEAELRVDQDKLEQDLTDAGFDREDIYNAL
                     LWLEKLADYQEGLTEPMQLASDPLSMRIYTPEECERLDASCRGFLLFLEQIQVLNLEI
                     REMVIERVLALDTAEFDLEDLKWVILMVLFNIPGCENAYQQMEELLFEVNEGMLH"
     gene            22089..22631
                     /locus_tag="JN125_001529"
     CDS             22089..22631
                     /locus_tag="JN125_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871354.1"
                     /translation="MAKSALFTVRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYV
                     RPLKSSADGHIVKVLEGQVCPACGANLVLRQGRFGMFIGCSNYPECEHTELIDKPDET
                     AITCPQCRTGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKT
                     AQGVKHFCASKQCGKPVSAE"
     gene            22636..23208
                     /gene="tsaC"
                     /locus_tag="JN125_001530"
     CDS             22636..23208
                     /gene="tsaC"
                     /locus_tag="JN125_001530"
                     /EC_number="2.7.7.87"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonylcarbamoyladenylate synthase type 1
                     TsaC"
                     /protein_id="HAY8871355.1"
                     /translation="MNNNLQGDAIAAAIDVLNEERVIAYPTEAVFGVGCDPDSETAVM
                     RLLELKQRPVDKGLILIAANYEQLKPYIDDTMLTDAQRETIFSRWPGPVTFVFPAPAT
                     TPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEVRAQFGA
                     AFPVVPGETGGRLNPSEIRDALTGELFRQG"
     gene            23213..24031
                     /gene="aroE"
                     /locus_tag="JN125_001531"
     CDS             23213..24031
                     /gene="aroE"
                     /locus_tag="JN125_001531"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709069.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HAY8871356.1"
                     /translation="METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFI
                     NTLNAFFSAGGKGANVTVPFKEEAFARADELTERAALAGAVNTLKRLEDGRLQGDNTD
                     GIGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAK
                     LFAHTGSIQALGMDELEGHEFDLIINATSSGISGDIPAIPSSLIHLGIYCYDMFYQKG
                     KTPFLAWCEQRGSKRNVDGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEELSA"
     gene            24028..24285
                     /locus_tag="JN125_001532"
     CDS             24028..24285
                     /locus_tag="JN125_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1488 domain-containing protein"
                     /protein_id="HAY8871357.1"
                     /translation="MNQAIQFPDREEWDENKKCVCFPALVNGMQLTCAISGESLAYRF
                     TGDTPEQWLASFRQHRWDLEEEAENLIQEQSEDDQGWVWLP"
     gene            complement(24261..24815)
                     /locus_tag="JN125_001533"
     CDS             complement(24261..24815)
                     /locus_tag="JN125_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417738.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HAY8871358.1"
                     /translation="MSDVLRPYRDLFPQIGQRVMIDDSSVVIGDVRLADDVGIWPLVV
                     IRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVTVGHKVMLHGCTIGN
                     RVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSPVKQIRPLSDEEKAG
                     LLYSANNYVKWKDEYLDQGNQTQP"
BASE COUNT         6457 a         5996 c         6576 g         6218 t
ORIGIN      
        1 aggcagcggg ttttttaatg attcttttcc tctcatgagc agaccaataa ctacggctcc
       61 gcaagcgaat gaggcagcaa ggaaaaccag tcgtggtaag aaggcccatg aatgccaggc
      121 gccaagggcg gcgagaaact tcacatcacc atagcctaat ccttctttat gtcgcagtat
      181 gcgatacccc cagtaaatga cagcgaatgt gccgtaacca acaattgtcc cccataacgc
      241 atcggctaaa ccatcaggat gacaaacttg atagaacaaa agacctgacc agagtaacgg
      301 gcacgtaaat ctgtcaggta acaagccatg ctttgcatcc cagaaaaaaa gtagggctga
      361 taaacaagcg tacaaaatca gaaagggaag ggtagtgtcc ataaaacatc ctctgtaatt
      421 ggagtatcac catcgaataa ctccggatgc tcagcaacag agagagcgct gatttgttaa
      481 cctgattccg gtgaaaaacg ctatcttcac aaccttacaa atttcgtgga atgcagctcg
      541 caatctgcgc gttgcgatta atttctaccc gatgcttgcg tcaggctcag atttgcgtat
      601 aatgcgcggg cttgtcgtag ttgacagcag gttcaatctg aacctcagtt agccgaattt
      661 ggctacctaa caatgctccc aatcggggag ctacgtaaga acggttacac tctcccatca
      721 atcgtaatgg gtctgaggag taatcatttt cgtttataaa ataattggag ctctggtctc
      781 atgcagaacc aaagaatccg tatccgcctg aaagcgtttg atcatcgtct gatcgatcaa
      841 gcaaccgcgg aaatcgtcga gactgccaag cgcactggtg cgcaggtccg tggtccgatc
      901 ccgctgccga cacgcaaaga gcgcttcact gttctgatct ccccgcacgt caacaaagac
      961 gcgcgcgatc agtacgaaat ccgtactcac ttgcgtctgg ttgacatcgt tgagccaacc
     1021 gagaaaaccg ttgatgctct gatgcgtctg gatctggctg ccggtgtaga cgtgcagatc
     1081 agcctgggtt aatcaggtca ttgagcgatt gagaggttga aacaatgatt ggtttagtcg
     1141 gtaaaaaagt gggtatgacc cgtatcttca cagaagacgg cgtttctatc ccagtaaccg
     1201 taatcgaagt tgaagcaaac cgcgttactc aggttaaaga cctggctaac gatggctacc
     1261 gtgctattca ggtgaccacc ggtgctaaaa aagctaaccg tgtgaccaag cctgaagctg
     1321 gccacttcgc taaagctggc gtagaagctg gccgtggtct gtgggaattc cgcctggctg
     1381 aaggcgaaga gttcactgta ggtcagagca ttagcgttga actgtttgct gacgttaaaa
     1441 aagttgacgt aactggcacc tctaaaggta aaggtttcgc aggtaccgtt aagcgctgga
     1501 acttccgtac ccaggacgct actcacggta actccttgtc tcaccgcgtt ccgggttcta
     1561 tcggtcagaa ccagactccg ggcaaagtgt tcaaaggcaa gaaaatggca ggtcagatgg
     1621 gtaacgaacg tgtaaccgtt cagagccttg acgtagtacg cgttgacgct gagcgcaacc
     1681 tgctgctggt taaaggtgct gtcccgggtg caaccggtag cgacctgatc gttaaaccag
     1741 ctgtgaaggc gtaaggagat agcaatggaa ttagtattga aagacgcgca gagcgcgctg
     1801 actgtttccg aaactacctt cggtcgtgat ttcaacgaag cgctggttca ccaggttgtt
     1861 gttgcttatg cagctggtgc tcgtcagggt actcgtgctc agaagactcg tgctgaagta
     1921 actggttccg gtaaaaaacc gtggcgccag aaaggcaccg gccgtgcgcg ttctggttct
     1981 atcaagagcc cgatctggcg ttctggtggc gtgacctttg ctgctcgtcc gcaggaccac
     2041 agtcaaaaag ttaacaagaa gatgtaccgc ggcgcgctga aaagcatcct gtccgaactg
     2101 gtacgtcagg atcgtctgat cgttgtcgag aagttctctg tagaagcgcc gaaaactaag
     2161 ctgctggcac agaaactgaa agacatggct ctggaagatg tgctgatcat caccggtgag
     2221 ctggacgaaa acctgttcct ggctgcgcgc aacctgcaca aggttgacgt acgcgatgca
     2281 actggtatcg acccggttag cctgatcgcc ttcgacaaag tcgtaatgac tgctgatgct
     2341 gttaagcaag ttgaggagat gctggcatga ttcgtgaaga acgtctgctg aaggtgctgc
     2401 gtgcaccgca cgtttctgaa aaagcgtcta ctgcgatgga aaaatccaac accatcgtac
     2461 tcaaagttgc taaagacgcg accaaagcag aaatcaaagc tgctgtgcag aaactgtttg
     2521 aagtcgaagt cgaagtcgtt aacaccctgg tagttaaagg gaaagttaaa cgtcacggac
     2581 agcgtatcgg tcgtcgtagc gactggaaaa aagcttacgt caccctgaaa gaaggccaga
     2641 atctggactt cgttggcggc gctgagtaag tcggaggagt aatacaatgg cagttgttaa
     2701 atgtaaaccg acatctccgg gtcgtcgcca cgtagttaaa gtggttaacc ctgagctgca
     2761 caagggcaaa ccttttgctc cgttgctgga aaaaaacagc aaatccggtg gtcgtaacaa
     2821 caatggccgt atcaccactc gtcatatcgg tggtggccac aagcaggctt accgtattgt
     2881 tgacttcaaa cgcaacaaag acggtatccc ggcagttgtt gaacgtcttg agtacgatcc
     2941 gaaccgttcc gcgaacatcg cgctggttct gtacaaagac ggtgaacgcc gttacatcct
     3001 ggcccctaaa ggcctgaaag ctggcgacca gattcagtct ggcgttgatg ctgcaatcaa
     3061 accaggtaac accctgccga tgcgcaacat cccggttggt tctactgttc ataacgtaga
     3121 aatgaaacca ggtaaaggcg gtcagctggc acgttccgct ggtacttacg ttcagatcgt
     3181 tgctcgtgat ggtgcttatg tcaccctgcg tctgcgttct ggtgaaatgc gtaaagtaga
     3241 agcagactgc cgtgcaactc tgggcgaagt tggcaatgct gagcatatgc tgcgcgttct
     3301 gggtaaagca ggtgctgcac gctggcgtgg tgttcgtccg accgttcgcg gtaccgcgat
     3361 gaacccggta gaccacccac atggtggtgg tgaaggtcgt aactttggta agcacccggt
     3421 aactccgtgg ggcgttcaga ccaaaggtaa gaagacccgc agcaacaagc gtactgataa
     3481 attcatcgta cgtcgccgta gcaaataatt ttagaggata agccatgcca cgttctctca
     3541 agaaaggtcc ttttattgac ctgcacttgc tgaagaaggt agagaaagcg gtggaaagcg
     3601 gagacaagaa gcccctgcgc acttggtccc gtcgttcaac gatctttcct aacatgatcg
     3661 gtttgaccat cgctgtccat aatggtcgtc agcacgttcc ggtatttgta accgacgaaa
     3721 tggtcggtca caaactgggt gaattcgcac cgactcgtac ttatcgcggc cacgctgctg
     3781 ataaaaaagc gaagaagaaa taaggtagga ggaagagatg gaaactatcg ctaaacatcg
     3841 ccatgctcgt tcttctgctc agaaggttcg ccttgttgct gacctgattc gcggtaagaa
     3901 agtgtcgcag gctctggata ttttgaccta caccaacaag aaagcggctg tactggtcaa
     3961 gaaagttctg gaatctgcca ttgctaacgc tgaacacaac gatggcgctg acattgacga
     4021 tctgaaagtt acgaaaattt tcgtagacga aggcccgagc atgaagcgca ttatgccgcg
     4081 tgcaaaaggt cgtgcagatc gcatcctgaa gcgcaccagc cacatcactg tggttgtgtc
     4141 cgatcgctga gactctggag actagcaatg ggtcagaaag tacatcctaa tggtattcgc
     4201 ctgggtattg taaaaccatg gaactctacc tggtttgcga acaccaaaga attcgctgac
     4261 aacctggaca gcgattttaa agtacgtcag tacctgacta aggaactggc taaagcgtcc
     4321 gtatctcgta tcgttatcga gcgtccggct aagagcatcc gtgtaaccat tcacactgct
     4381 cgcccgggta tcgttatcgg taaaaaaggt gaagacgtag aaaaactgcg taaggtcgta
     4441 gcggacatcg ctggcgttcc tgcacagatc aacatcgccg aagttcgtaa gcctgaactg
     4501 gacgcaaaac tggttgctga cagcatcact tctcagctgg aacgtcgcgt tatgttccgt
     4561 cgtgctatga agcgtgctgt acagaacgca atgcgtctgg gcgctaaagg tattaaagtt
     4621 gaagttagcg gccgtctggg cggcgcggaa atcgcacgta ccgaatggta ccgcgaaggt
     4681 cgcgtaccgc tgcacactct gcgtgctgac atcgactaca acacctctga agcgcacacc
     4741 acttacggtg taatcggcgt taaagtgtgg atcttcaaag gcgagatcct gggtggtatg
     4801 gctgctgttg aacaaccgga aaaaccggct gctcagccta aaaagcagca gcgtaaaggc
     4861 cgtaaataag gagcgtcgct gatgttacaa ccaaagcgta caaaattccg taaaatgcac
     4921 aaaggccgta accgcggtct ggcgcagggt acggatgtta gcttcggcag cttcggtctg
     4981 aaagctgttg gccgtggtcg tctgactgcc cgtcagatcg aagcagcacg tcgtgctatg
     5041 acccgtgcag ttaagcgtca aggtaagatc tggatccgtg tgttcccgga caaaccgatc
     5101 actgaaaagc cgctggcagt gcgtatgggt aaaggtaaag gtaacgtgga gtattgggtt
     5161 gccttgattc agccgggtaa agtcctgtat gaaatggacg gtgttccgga agagctggcc
     5221 cgtgaagcat tcaagctggc agcagcgaaa ctgccgatta aaaccacctt tgtaactaag
     5281 acggtgatgt aatgaaagca aaagagctgc gtgagaagag cgttgaagag ctgaacaccg
     5341 agctgctgaa cctgctgcgt gagcagttca acctgcgtat gcaggctgca agtggccagc
     5401 tgcaacagtc tcacctgttg aagcaagtgc gtcgcgatgt cgcacgcgtt aagactttac
     5461 tgaacgagaa ggcgggtgcg taatgaccga taaaatccgt actctgcaag gtcgcgttgt
     5521 tagcgacaaa atggagaaat ccattgttgt tgctatcgaa cgttttgtga aacacccgat
     5581 ctacggtaaa ttcatcaagc gtacgaccaa actgcacgta catgacgaga acaacgaatg
     5641 cggtatcggt gacgtggttg aaatccgcga atgccgtccg ctgtccaaga ctaaatcctg
     5701 gacgctggtt cgcgttgtag agaaagcggt tctgtaatac agtacactct ctcgatacga
     5761 ataaacggct cagaaatgag ccgtttattt tttctatcca tatccttgaa gcggtgttat
     5821 aatgccgcgc cctcgatatg gggattttta acgacctgat tttcgggtct cagtagtagt
     5881 tgacattagc ggagcactaa aatgatccaa gaacagacta tgctgaacgt cgccgacaac
     5941 tccggtgcac gtcgcgtaat gtgtatcaag gttctgggtg gctcgcaccg tcgctacgca
     6001 ggcgtaggcg acatcatcaa gatcaccatc aaagaagcaa ttccgcgtgg taaggtcaaa
     6061 aaaggtgatg tgctgaaggc ggtagtggtg cgcaccaaga agggtgttcg tcgcccggac
     6121 ggttctgtca ttcgcttcga tggtaatgct tgtgttcttc tgaacaacaa cagcgagcag
     6181 cctatcggta cgcgtatttt tgggccggta actcgtgagc ttcgtagtga gaagttcatg
     6241 aaaattatct ctctggcacc agaagtactc taaggagcga atcatggcag cgaaaatccg
     6301 tcgtgatgac gaagttatcg tgttgaccgg taaagataaa ggtaaacgcg gtaaagttaa
     6361 gaatgtcctg tcttccggca aggtcattgt tgaaggtatc aacctggtta agaaacatca
     6421 gaagccggtt ccggccctga accaaccggg tggcatcgtt gaaaaagaag ccgctattca
     6481 ggtttccaac gtagcaatct tcaatgcggc aaccggcaag gctgaccgtg taggctttag
     6541 attcgaagac ggcaaaaaag tccgtttctt caagtctaac agcgaaacta tcaagtaatt
     6601 tggagtagta cgatggcgaa actgcatgat tactacaaag acgaagtagt taaaaaactc
     6661 atgactgagt ttaactacaa ttctgtcatg caagtccctc gggtcgagaa gatcaccctg
     6721 aacatgggtg ttggtgaagc gatcgctgac aaaaaactgc tggataacgc agcagcagac
     6781 ctggcagcaa tctccggtca aaaaccgctg atcaccaaag cacgcaaatc tgttgcaggc
     6841 ttcaaaatcc gtcagggcta tccgatcggc tgtaaagtaa ctctgcgtgg cgaacgcatg
     6901 tgggagttct ttgagcgcct gatcactatt gctgtacctc gtatccgtga cttccgtggc
     6961 ctgtccgcta agtctttcga cggtcgtggt aactacagca tgggtgtccg tgagcagatc
     7021 atcttcccag aaatcgacta cgataaagtc gaccgcgttc gtggtttgga tattaccatt
     7081 accactactg cgaaatctga cgaagaaggc cgcgctctgc tggctgcctt tgacttcccg
     7141 ttccgcaagt aaggtagggt tactaaatgg ctaagcaatc aatgaaagca cgcgaagtaa
     7201 aacgcgtagc tttagctgat aaatacttcg cgaaacgcgc tgaactgaaa gcgatcatct
     7261 ctgatgtgaa cgcttccgac gaagatcgtt ggaacgctgt tctcaagctg cagactctgc
     7321 cgcgtgattc cagcccgtct cgtcagcgta accgctgccg tcaaacaggt cgtccgcatg
     7381 gtttcctgcg gaagttcggg ttgagccgta ttaaggtccg tgaagccgct atgcgcggtg
     7441 aaatcccggg tctgaaaaag gctagctggt aattgtcacc aattgaatca cgggagtaaa
     7501 gacagatgag catgcaagat ccgatcgcgg atatgctgac ccgtatccgt aacggtcagg
     7561 ccgcgaacaa agctgcggtc accatgcctt cctccaagct gaaagtggca atcgccaacg
     7621 tgctgaagga agaaggtttt attgaagatt ttaaagttga aggcgacacc aagcctgaac
     7681 tggaacttac tctgaagtat ttccagggca aagctgttgt agaaagcatt cagcgtgtca
     7741 gccgcccagg tctgcgcatc tataaacgta aagatgagct gccgaaagtt atggcgggtc
     7801 tgggtatcgc ggttgtttct acctctaaag gtgttatgac tgatcgtgca gcgcgccagg
     7861 ctggtcttgg tggcgaaatt atctgctacg tagcctaatc ggaggaaaaa atgtctcgtg
     7921 ttgctaaagc accggtcgtt gttcctgccg gcgttgacgt aaaaatcaac ggtcaggtta
     7981 ttacgatcaa aggtaaaaac ggcgagctga ctcgtactct caacgatgct gttgaagtta
     8041 aacatgcaga taataccctg accttcggtc cgcgtgatgg ttacgcagac ggttgggcac
     8101 aggctggtac cgcgcgtgcc ctgctgaact caatggttat cggtgttacc gaaggcttca
     8161 ctaagaagct gcagctggtt ggtgtaggtt accgtgcagc ggttaaaggt aatgtgatta
     8221 acctgtctct gggtttctct catcctgttg accatcagct gcctgcgggt atcactgctg
     8281 aatgtccgac tcagactgaa atcgtgctga aaggcgctga taagcaggtg atcggccagg
     8341 ttgcagcgga tctgcgcgcc taccgtcgtc ctgagcctta taaaggcaag ggtgttcgtt
     8401 acgccgacga agtcgtgcgt accaaagagg ctaagaagaa gtaaggtaac actatggata
     8461 agaaatctgc tcgtatccgt cgtgcgaccc gcgcacgccg caagctccag gagctgggcg
     8521 caactcgcct ggtggtacat cgtaccccgc gtcacattta cgcacaggta attgcaccga
     8581 acggttctga agttctggta gctgcttcta ctgtagaaaa agctatcgct gaacaactga
     8641 agtacaccgg taacaaagac gcggctgcag ctgtgggtaa agctgtcgct gaacgcgctc
     8701 tggaaaaagg catcaaagat gtatcctttg accgttccgg gttccaatat catggtcgtg
     8761 tccaggcact ggcagatgct gcccgtgaag ctggccttca gttctaaggt agaggtgtaa
     8821 gatggctcac atcgaaaaac aagctggcga actgcaggaa aagctgatcg cggtaaaccg
     8881 cgtatctaaa accgttaaag gtggtcgtat tttctccttc acagctctga ctgtagttgg
     8941 cgatggtaac ggtcgcgttg gttttggtta cggtaaagcg cgtgaagttc cagcagcgat
     9001 ccagaaagcg atggaaaaag cccgtcgcaa tatgattaac gtcgcgctga ataacggcac
     9061 tctgcaacac cctgttaaag gtgttcacac gggttctcgc gtattcatgc agccggcttc
     9121 cgaaggtacc ggtatcatcg ccggtggtgc aatgcgcgcc gttctggaag tcgctggggt
     9181 tcataacgtt ctggctaaag catatggttc caccaacccg atcaacgtgg ttcgtgcaac
     9241 tattgatggc ctggaaaata tgaattctcc agaaatggtc gctgccaagc gtggtaaatc
     9301 cgttgaagaa attctgggga aataaaccat ggcaaagact attaaaatta ctcaaacccg
     9361 cagtgcaatc ggtcgtctgc cgaaacacaa ggcaacgctg cttggcctgg gtctgcgtcg
     9421 tattggtcac accgtagagc gcgaggatac tcctgctatt cgcggtatga tcaacgcggt
     9481 ttccttcatg gttaaagttg aggagtaaga gatgcgttta aatactctgt ctccggccga
     9541 aggctccaaa aaggcgggta aacgcttggg tcgtggtatc ggttctggcc tcggtaaaac
     9601 cggtggtcgt ggtcacaaag gtcagaagtc tcgttctggc ggtggcgtac gtcgcggttt
     9661 cgagggtggt cagatgcctc tgtaccgtcg tctgccgaaa ttcggcttca cttctcgtaa
     9721 agcagcgatt acagccgaag ttcgtctgtc tgacctggct aaagtagaag gcggtgttgt
     9781 agacctgaac acgctgaaag cggctaacat tatcggtatc cagatcgagt tcgcgaaagt
     9841 gatcctggct ggcgaagtaa cgactccggt aactgttcgt ggcctgcgtg ttactaaagg
     9901 cgctcgtgct gctatcgaag ctgctggcgg taaaatcgag gaataagtag cagatggcta
     9961 aacaaccggg attagatttt caaagtgcca aaggtggctt aggcgagctg aaacgcagac
    10021 tgctgtttgt tatcggtgcg ctgattgtgt tccgtattgg ctcttttatt ccgatccctg
    10081 gtattgatgc cgctgtactt gccaaactgc ttgagcaaca gcgaggcacc atcattgaga
    10141 tgtttaacat gttctctggt ggtgctctca gccgtgcttc tatctttgct ctggggatca
    10201 tgccgtatat ttcggcgtcg atcattatcc agctgctgac ggtggttcac ccaacgttgg
    10261 cggaaattaa gaaagaaggg gagtctggtc gtcgtaagat cagccagtac acccgctacg
    10321 gtactctggt gctggcaata ttccagtcga tcggtattgc taccggtctg ccgaatatgc
    10381 ctggtatgca aggcctggtg attaacccgg gctttgcatt ctacttcacc gctgttgtaa
    10441 gtctggtcac aggaacgatg ttcctgatgt ggttgggcga acagatcact gaacgaggta
    10501 tcggcaacgg tatttcaatc attatcttcg ccggtattgt cgcgggactc ccgccagcca
    10561 ttgcccatac tatcgagcaa gcgcgtcaag gcgacctgca cttcctcgtg ttgctgttgg
    10621 ttgcagtatt agtatttgca gtgacgttct ttgtcgtatt tgttgagcgt ggtcaacgcc
    10681 gcattgtggt aaactacgcg aaacgtcagc aaggtcgtcg tgtctatgct gcacagagca
    10741 cacatttacc gctgaaagtg aatatggcgg gggtaatccc ggcaatcttc gcttccagta
    10801 ttattctgtt cccggcgacc atcgcgtcat ggttcggggg cggtactggt tggaactggc
    10861 tgacaacaat ttcgctgtat ttgcagcctg ggcaaccgct ttatgtgtta ctctatgcgt
    10921 ctgcaatcat cttcttctgt ttcttctaca cggcgttggt tttcaacccg cgtgaaacag
    10981 cagataacct gaagaagtcc ggtgcatttg taccaggaat tcgtccggga gagcaaacgg
    11041 cgaagtatat cgataaagta atgacccgcc tgaccctggt tggtgcgctg tatattacct
    11101 ttatctgcct gatcccggag ttcatgcgtg atgcaatgaa agtaccgttc tacttcggtg
    11161 ggacctcact gcttatcgtt gttgtcgtga ttatggactt tatggctcaa gtgcaaactc
    11221 tgatgatgtc cagtcagtat gagtctgcat tgaagaaggc gaacctgaaa ggctacggcc
    11281 gataattggt cgcccgagaa gttacggaga gtaaaaatga aagttcgtgc ttccgtcaag
    11341 aaattatgcc gtaactgcaa aatcgttaag cgtgatggtg tcatccgtgt gatttgcagt
    11401 gccgagccga agcataaaca gcgccaaggc tgattttttc gcatattttt cttgcaaagt
    11461 tgggttgagc tggctagatt agccagccaa tcttttgtat gtctgtgcgt ttccatttga
    11521 gtatcctgaa aacgggcttt tcagcatgga acgtacatat taaatagtag gagtgcatag
    11581 tggcccgtat agcaggcatt aacattcctg atcataagca tgccgtaatc gcattaactt
    11641 cgatttatgg cgtcggcaag acccgttcta aagccatctt ggctgcagcg ggtatcgctg
    11701 aagatgttaa gatcagtgag ctgtctgaag gacaaatcga cacgctgcgt gacgaagttg
    11761 ccaaatttgt cgttgaaggt gatctgcgcc gtgaaatcag catgagcatc aagcgcctga
    11821 tggatcttgg ttgctatcgc ggtttgcgtc atcgtcgtgg tctcccggtt cgcggtcagc
    11881 gtaccaagac caacgcacgt acccgtaagg gtccgcgcaa accgatcaag aaataatcgg
    11941 ggtgattgaa taatggcaaa ggcaccaatt cgtgcacgta aacgtgtaag aaaacaagtc
    12001 tctgacggcg tggctcatat ccatgcttct ttcaacaaca ccatcgtgac tatcactgat
    12061 cgtcagggta acgcgttggg ttgggcaaca gccggtggtt ccggtttccg tggttctcgc
    12121 aaatccactc cgtttgcagc tcaggttgca gcagagcgtt gcgctgacgc cgtgaaagaa
    12181 tacggcatca agaatctgga agttatggtt aaaggtccgg gtccaggccg cgaatctact
    12241 attcgtgctc tgaacgccgc aggtttccgc atcactaaca ttactgatgt gactccgatc
    12301 cctcataacg gttgtcgtcc gccgaaaaaa cgtcgcgtat aacgcctcgt tttccaggtt
    12361 tgttggagaa agaaaatggc aagatatttg ggtcctaagc tcaagctgag ccgtcgtgag
    12421 ggcaccgact tattccttaa gtctggcgtt cgcgcgatcg ataccaagtg taaaattgaa
    12481 caagctcctg gccagcacgg tgcgcgtaaa ccgcgtctgt ctgactatgg tgtgcagttg
    12541 cgtgaaaagc aaaaagttcg ccgtatctat ggtgtgctgg agcgtcagtt ccgtaactac
    12601 tacaaagaag cagcacgtct gaaaggcaac accggtgaaa acctgttggc tctgctggaa
    12661 ggtcgtctgg acaacgttgt ataccgtatg ggcttcggtg ccactcgtgc agaagcacgt
    12721 cagctggtta gccataaagc aattatggta aacggtcgtg ttgttaacat cgcttcttat
    12781 caggttagtc cgaatgacgt tgtaagcatt cgtgagaaag cgaagaagca gtctcgcgtg
    12841 aaagccgctc tggagctggc tgagcagcgt gaaaagccaa cttggctgga agttgatgct
    12901 ggcaagatgg aaggtacgtt taagcgtaag ccggagcgtt ctgatctgtc tgcggacatt
    12961 aacgaacacc tgatcgtcga gctttactcc aagtaaagct tagtaccaaa gagaggacac
    13021 aatgcagggt tctgtgacag agtttctaaa accgcgcctg gttgatatcg agcaagtgag
    13081 ttcgacgcac gccaaggtga cccttgagcc tttagagcgt ggctttggcc atactctggg
    13141 taacgcactg cgccgtattc tgctctcatc gatgccgggt tgcgcggtga ccgaggttga
    13201 gattgatggt gtactacatg agtacagcac caaagaaggc gttcaggaag atatcctgga
    13261 aatcctgctc aacctgaaag ggctggcggt gagagttcag ggcaaagatg aagttattct
    13321 taccttgaat aaatctggca ttggccctgt gactgcagcc gatatcaccc acgacggtga
    13381 tgtcgaaatc gtcaagccgc agcacgtgat ctgccacctg accgatgaga acgcgtctat
    13441 tagcatgcgt atcaaagttc agcgcggtcg tggttatgtg ccggcttcta cccgaattca
    13501 ttcggaagaa gatgagcgcc caatcggccg tctgctggtc gacgcatgct acagccctgt
    13561 ggagcgtatt gcctacaatg ttgaagcagc gcgtgtagaa cagcgtaccg acctggacaa
    13621 gctggtcatc gaaatggaaa ccaacggcac aatcgatcct gaagaggcga ttcgtcgtgc
    13681 ggcaaccatt ctggctgaac aactggaagc tttcgttgac ttacgtgatg tacgtcagcc
    13741 tgaagtgaaa gaagagaaac cagagttcga tccgatcctg ctgcgccctg ttgacgatct
    13801 ggaattgact gtccgctctg ctaactgcct taaagcagaa gctatccact atatcggtga
    13861 tctggtacaa cgtacagagg ttgagctcct taaaacgcct aaccttggta aaaaatctct
    13921 tactgagatt aaagacgtgc tggcttcccg tggactgtct ctgggcatgc gcctggaaaa
    13981 ctggccaccg gcaagcatcg ctgacgagta accggatcac aggttaaggt tttactgaga
    14041 aggataaggt catgcgccat cgtaagagtg gtcgtcaact gaaccgcaac agcagccatc
    14101 gccaggctat gttccgcaat atggcaggtt cactggttcg tcatgaaatc atcaagacga
    14161 ctctgcctaa agcgaaagag ctgcgccgcg tagttgagcc gctgattact cttgccaaga
    14221 ctgatagcgt tgctaatcgt cgtctggcat tcgcccgtac tcgtgataac gagatcgtgg
    14281 caaaactgtt taacgaactg ggcccgcgtt tcgcgagccg tgccggtggt tacactcgta
    14341 ttctgaagtg tggcttccgt gcaggcgaca acgcgccgat ggcttacatc gagctggttg
    14401 atcgttcaga gaaagcagaa gctgctgcag agtaatctga agcaacgtaa aaaaacccgc
    14461 cccggcgggt ttttttatac ccgtagcatc cccacttatc tacaatagct gtactctttt
    14521 tgttcatccc ctggagtatt tatgtggtta cttgaccagt gggcagagcg tcatatagca
    14581 gaagcgcaag cgaaaggtga gtttgataac ctggcaggta gcggcgaacc attgatactg
    14641 gatgatgatt ctcatgtgcc accggaatta cgtgcggggt atcgcttgct gaagaatgcc
    14701 ggttgcttac cgccagaact tgagcagcgg agggaagcaa ttcagcttct ggatatcctg
    14761 agaggtatcc gtcacgatga tccgcaatat caagaggtta gccgtcgatt gtcattactg
    14821 gaattgaagc tgcgacaagc tggattgagt accgattttt tacgcggcga ttatgctgac
    14881 aagttgttgg acaaaatcaa cgataactag tggagtatgt atgtatcgca ttggtgagct
    14941 ggcaaaaatg gcggaagtaa cacctgacac gattcgttat tacgaaaaac agcagatgat
    15001 ggagcatgaa gtgcgtactg aaggcgggtt tcgcctgtat accgaaagcg atctccagcg
    15061 attgaaattt atccgccatg ccagacaact aggtttcagt ctggagtcga tccgcgagtt
    15121 gctgtcgatc cgcatcgatc ctgaacacca tacctgtcag gagtcaaaag gcattgtgca
    15181 ggaaagattg caggaagtcg aagcacggat agccgagttg cagagtatgc agcgttcctt
    15241 gcaacgcctt aacgatgcct gttgtgggac cgcccatagc agtgtttatt gttcgattct
    15301 tgaagctctt gaacaagggg cgagtggcgt taagagtggc tgttgatttt ttgcactggc
    15361 aggattacac tcgcgccgta aaataaccaa ttggagtttt tatgagccga tatcagcata
    15421 ctaaagggca gataagggat aatgcgatag aagcattact acatgatccc ttattccgac
    15481 agcgcgtaga gaaaaataag aaggggaaag gcagttacat gcgaaaagga aaacatggca
    15541 atcgggggaa ctgggaggcc agtggcaaga aagtaaatca cttttttacc actggtcttc
    15601 tgctttcagg cgcttgttaa gagcggttat tctgctcttt cagcaaatca cgaatttctg
    15661 ccagtaatac ttcttcttta gttggtgcag gtgcggcagc tggttcttct tttttccgat
    15721 tcagtttgtt gattagctta atcgccataa agatggcaaa ggccacaatc agaaaatcaa
    15781 agacgttttg aatgaagaca ccgtaatgca tcacaacagc agggatatcc ccctgcgcat
    15841 cgcgtagcgt gacagcaaac tgtttaaagt cgatcccgcc aattaataag cccagaggtg
    15901 gcatgatgat atcggcaacc agtgaagata caatcttccc gaatgccgca ccgataatga
    15961 cacccaccgc caaatccacc acgttcccgc gcatcgcaaa ttcgcgaaat tctttaataa
    16021 tgctcatgtt attctcccta tgaagccgac aaccataagt ctaacaaatg ttaagccatt
    16081 ttcctgccag gaatgaattt aattaatcct tgataatcaa agggaaataa taaggcgtca
    16141 ttagacgcct tattaattac aagaagaaag ggcttggctg gaagagtctt tcgacgtcgg
    16201 taataaactt tttatctgtg aggaacataa ttacgtgatc gccttgctca atgcgcagat
    16261 tgtcattggc aatcatcacg tcgtttccac gtaccaccgc tccaataatc gttcctggcg
    16321 gtagcttgat ttcgtcaatg actctgccga caacgcgtga ggtgctttca tcaccgtgag
    16381 caacggcttc aatagcttct gctacgccgc ggcgcaatga ggaaacacca acaatatctg
    16441 cttttcgcac atggctaagc aacgcagaaa tagttgcttg ttgtggtgaa attgcaatat
    16501 cgatcacgct cccctgaacc agatccacat aagcgcgacg ctggatcaat accatcacct
    16561 ttttcgcacc catacgtttg gcaagcatgg cggacatgat attggcctcg tcatcgttgg
    16621 tgacggcaat aaacagatca acttgatcga tatgttcttc ggccagcagt tcttgatccg
    16681 acgcatcacc aaaaaagacg atcgtattct gcaacttttc cgccagttcg gcagcgcgct
    16741 gctgattacg ttcgatgagt ttaacgctgt aatctttttc cagacgacgc gccagccctg
    16801 caccgatatt accgccacca accagcatga tccgcttata cggtttttcc agtcgctgta
    16861 attcactcat caccgcgcgg atatgctgtg aagcggcaat aaagaacact tcatcaccag
    16921 cttcaacaat ggtcgaacct tgtggacgaa tggggcgatc gtggcggaaa attgctgcca
    16981 cacgagtatc gatatgtggc atatgttcgc gcatggtcga aagtgcatta ccaatcagcg
    17041 ggccgccata ataggcttta actacagcga ggctgacttt accctcagcg aagttcacca
    17101 cctgcaatgc gcctggatac tcaatcagtc ggtaaatatt atcgataacc aactgctctg
    17161 gtgcgatcag atgatcaatc ggtacagcat ctgaatgaaa tagcttatcg gcatcgcgta
    17221 cgtagtctgg tgagcggatg cgagcgatgc gattaggggt gttgaaaagt gagtaggcta
    17281 cctggcaggc aaccatattg gtttcatctg aactggttac agcaaccagc atatcggcgt
    17341 cgtcggcacc tgcctcccgc aatacgcgtg gatgagagcc atgcccctgc acgactcgca
    17401 ggtcaaattt atcctgcaag gtccgcagac gctcaccgtt ggtatcgaca acagtaatat
    17461 cgttgttctc gccaaccagg ttttccgcca gtgtgccgcc aacctggccg gcacccagaa
    17521 tgataatttt catcagtctc gacccgttat ctcatcactt tttgattagc ttagcgtaaa
    17581 agaagccgtc gccctcttcg gcaccaggca gattttgttt acccggttgc tctggtgctc
    17641 ctgtttcgca aagttcggca tcagcggtac gttgcaaaaa agctttaatc tgcaggctat
    17701 tctcttccgg taacaccgaa caggtggcat agaccagggt tccaccggat tttaaatgcg
    17761 gccaaatggc gtcgagaatt tcagactgca attgcgcgag ttccgggata tcgcgatcgc
    17821 gacgtaacca tttaatatcc ggatggtgac gaatcacccc cgttgctgaa caaggcgcat
    17881 ctaataaaat gcgatcaaac tgttgctcgc cacaccattg ggaagggtaa cggccatcac
    17941 cttgtttcac ggttgccttc ataccaaggc gttttaaatt gtcgtaaacg cgagagaggc
    18001 gctgttcgtc aatatcaacc gcaacaacct gcgcttctgg tgccacctca aggatatgcg
    18061 ttgttttacc gccgggggcg gcacaaagat ccagaatgtg ttcactgttt tgtggcgcaa
    18121 gccaggtcat gcaaccttgt gctgatgcat cctgaacggt aacccatccg tcttcaaaac
    18181 caggtagcgc atgaacaggt gcaggtgttt ccagacgtac agcatcaggg taatccgcat
    18241 gcgggaaacc tttcattcct gcttcatcca gcaatgcaag ccagctgtcg cgggaatgat
    18301 gcgtacgatt aacgcgcagc cacattggcg gacgctggtt attggcttcg acgatggatt
    18361 gccactgctc tggatacgct ttttgcagac gcttcagcaa ccaggaagga tgcagataac
    18421 gtgcatcact ggcattaaac ttggctaata actcttcttg ctgacgctgg aactggcgta
    18481 atacaccgtt aatcaaccct ttaagttgcg gacgcttaat tgcgatagcg ccttcaaccg
    18541 tttcagccag cgcagcatga ggtggaatgc gggtataaag cagttgatac aaaccaacca
    18601 taatcaggta atgcacagtg cgctgtttgc cggtcatcgg acgggccatt aacttattaa
    18661 tcagccagtc taactgcgaa agcgtacgca gtacgccaaa gcacaactct tgaagaagtg
    18721 ctttgtcttt atcagaaact ttttgctgga gcggtggcag aatgttgctt aatgattgcc
    18781 cttgctcgac gacttgttca acggcctggg ccgccatgct acgtaaatta cgttgttttt
    18841 tcataagtat aaaaatgccc ggtaagaccg ggcttagaag agtggactat caggccagac
    18901 ggttgcccgg aacaaaccat tcccgacgag aattcaggag gtcttgcgcg ctcatcgctt
    18961 tcttacccgc aggttgtaac gagagcagat tcaggattcc atcaccagtt gcaacctgaa
    19021 tgccttgttt gttggcttca aggatcgttc ctggtgcagc gttggttgcc gtatcaatga
    19081 ccgacgcttt ccagacttta accggctgtc tttcaatttc cagccagctc attggccatg
    19141 gattgaaagc gcgaatgcag cgttcaagct gtgctgccga aagtgaccag tcaatacgcg
    19201 cttcttcttt actcaacttt tcggcgtaag tgacaagagt tttgtcctga acttctggtt
    19261 tcgccgtgcc gtctgccagt tgtttcaacg tggtgataag cccttgtggg ccaagctctg
    19321 ccagcttgtc gtacagcgta ccactggtat cttctgcagt aatcgggcag gagagcttat
    19381 agagcatgtc accggtgtct aaaccgacat ccatttgcat aatggtcaca ccagtttctg
    19441 catcacccgc ccatagtgag cgttggattg gtgcagcacc gcgccagcgt ggcagcagtg
    19501 aaccatgaac gttgatacag ccaagacgcg gcatctccag cactgcttta ggcagaatta
    19561 agccataggc gacgacgacc ataacatcag cctgcagatc ggcgaccagt tgctggtttt
    19621 cttgtggacg cagggaaaca ggttgaaaaa cgggcagacc tttttcctca gccagaactt
    19681 taaccgggct gggcatcagt tttttaccgc gtcctgccgg tcggtctggc tgggtgaaca
    19741 cgccaacgac gttatgacca gaagacaaca gcgcgtcgag atgacgcgct gcaaagtcag
    19801 gtgtacccgc aaaaataata cgtagtgatt ctgacacgtt agttcttatc cttaagcccg
    19861 ggctttcaga cgatccagtt tttcaacttt ctgacgaata cgttgttgtt tcaacggtga
    19921 cagataatcc ataaacagtt tgccgaccag gtgatccatc tcatgctgaa tacagatggc
    19981 taacagaccg tctgcttcca attcaaatgg tttaccgtcg cggtccaggg cgcgaatttt
    20041 aactttctct gcgcgtggca ctaaagcacg ttgtttaggg atcgacaggc aaccttcttc
    20101 aatgcctgtt tcgccgcttt tttctaaaag ctccggattg attaacacca gccgttcgtc
    20161 acggttttcc gaaacatcaa taacaatgat acgttgatgg atatcaacct gggttgccgc
    20221 caggccaata ccttcttctg cgtacatcgt ctcgaacata tcatcgacga tacgctgaat
    20281 ttctgcattc acttcttcta ccggtttagc aactttgcga agccgctcgt ccggaatatg
    20341 taacacttgc aaaactgaca taaatctcca gagatgtgtt caggagttag aaagattatt
    20401 tcttctattc tagacaaatc cccctctgat tgacagcatc actgaccaat cgcaaagatt
    20461 gctaaggctg cttatggcag ggagataagg atggtcgata cagatatttg gctgcgttta
    20521 atgagcatca gcagcttgta cggcgatgat atggtccgta tagctcactg gctggcaaaa
    20581 cagtcgcata ttgatgcggt tgtattgcag caaacagggc ttacattgcg gcaggcacaa
    20641 cgctttcttt catttccgcg aaagagtatc gaaagctcac tttgttggtt ggagcaaccc
    20701 aatcatcatt taatccctgc ggacagcgaa ttttatcctc ctcaacttct ggcgacgaca
    20761 gattaccccg gcgcactgtt tgttgaagga gaactgcacg cgctgcattc atttcagctt
    20821 gccgtagtgg ggagtcgggc gcattcatgg tatggcgagt gatggggacg attattttgc
    20881 gaaactctgg ccacgcgtgg agtgacaatt acgagtggac tggcgcgtgg aatcgatggt
    20941 gtggcgcata aagcggcctt acaggtaaat ggcgtcagca ttgctgtatt ggggaacgga
    21001 cttaatacca ttcatccgcg ccgccatgcc cgactggcta ccagtttgct tgaacatggt
    21061 ggggcacttg tctcggaatt tcccctcgat gttccacccc ttgcttacaa tttcccacga
    21121 agaaatcgca ttatcagtgg tctaagtaaa ggtgtactgg tggtggaagc ggctttgcgc
    21181 agtggttcgt tggtgacagc acgttgtgcg cttgagcagg ggcgtgaagt ttttgccttg
    21241 ccaggaccaa tagggaatcc gggaagcgaa gggcctcact ggttaataaa acaaggtgcg
    21301 attcttgtga cggaaccgga agaaattctg gaaaacttgc aatttggatt gcactggttg
    21361 ccagacgccc ctgaaaattc attttattca ccagatcagc aagacgtggc attgccattt
    21421 cctgagctcc tggctaacgt aggagatgag gtaacacctg ttgacgtcgt cgctgaacgt
    21481 gccggccaac ctgtgccaga ggtagttact caactactcg aactggagtt agcaggatgg
    21541 atcgcagctg tacccggcgg ctatgtccga ttgaggaggg catgccatgt tcgacgtact
    21601 aatgtatttg tttgaaacct atattcacac agaagctgag ttgcgtgtgg atcaagacaa
    21661 acttgaacag gatcttaccg acgcaggatt tgatcgagaa gatatctaca atgccctgct
    21721 ttggctggaa aagcttgcgg attatcagga aggactgaca gaaccgatgc aactggcctc
    21781 tgatccactc tccatgcgta tttatacccc tgaggagtgt gaaagactgg atgccagctg
    21841 tcgtggtttt ctgcttttcc ttgagcaaat tcaggtgctt aaccttgaaa tccgtgaaat
    21901 ggtgatagag cgagtgctcg cgctggatac cgcagagttc gacctggaag acctgaaatg
    21961 ggtaatcctg atggtgttgt tcaatattcc gggctgcgaa aatgcgtacc agcaaatgga
    22021 agaattactc tttgaagtga atgaaggtat gctgcattaa tcattccttt aattcagcat
    22081 aagttgttat ggcgaaatca gcactgttca cggtgcgtaa taatgagtcc tgcccaaagt
    22141 gcggggctga actggttatt cgatccggga aacacggtcc gtttcttgga tgctcacagt
    22201 atccggcgtg tgactacgtc cgtcctctga aatcttcagc ggatggacat attgtcaaag
    22261 ttctggaggg gcaggtttgc cctgcatgtg gcgcaaatct ggtattacgc cagggacgct
    22321 ttggtatgtt tattggttgc agtaactacc ctgaatgcga acataccgaa cttatcgata
    22381 aaccggacga aacagcaatt acatgccccc aatgtcggac gggccatctg gtccagcgcc
    22441 gctcccgtta tggcaaaaca tttcactcct gtgatcgcta cccggagtgt caatttgcca
    22501 ttaacttcaa acccatagct ggagaatgcc ctgagtgtca ttatccacta ctcatcgaaa
    22561 agaaaaccgc gcagggtgta aaacactttt gtgccagtaa acaatgtgga aagccggttt
    22621 cggcggaata ataacgtgaa taataacctg caaggagacg ctatcgcagc tgcgatagat
    22681 gtcctcaatg aagaacgtgt catcgcctat ccaacggaag ccgttttcgg tgttgggtgc
    22741 gatcctgata gcgaaacagc agtgatgaga ctgttggagt taaaacagcg tccggttgat
    22801 aaggggctga ttttaatcgc ggcaaattac gagcagctta aaccctatat tgatgacacc
    22861 atgctgactg atgcgcagcg tgaaaccatt ttttcccgct ggccaggtcc tgtcaccttt
    22921 gtctttcccg cgcctgcgac aacaccgcgc tggttgacgg gccgctttga ttcgcttgct
    22981 gtacgagtca ccgaccatcc gttggtggtt gctttgtgcc aggcttatgg taaaccgctg
    23041 gtttctacca gtgccaactt gagtggattg ccaccttgtc gaacagtaga cgaagttcgc
    23101 gcacaatttg gcgcggcgtt cccggttgtg cctggtgaaa cgggggggcg tttaaatcct
    23161 tcagaaatcc gcgatgccct gacgggtgaa ctgtttcgac aggggtaaca taatggaaac
    23221 ctatgctgtt tttggtaatc cgatagccca cagcaaatcg ccattcattc atcagcaatt
    23281 tgctcagcaa ctgaatattg aacatcccta tgggcgcgtg ttggcaccca tcaatgattt
    23341 catcaacaca ctgaacgctt tctttagtgc tggtggtaaa ggtgcgaatg tgacggtacc
    23401 ttttaaagaa gaggcttttg ccagagcgga tgagcttact gaacgggcag cgttggctgg
    23461 tgctgttaat accctcaagc ggttagaaga tggacgcttg cagggtgaca ataccgatgg
    23521 tataggtttg ttaagcgatc tggaacgtct gtcttttatc cgtccgggtt tacgtattct
    23581 gcttatcggc gctggtggag catctcgcgg cgtactacta ccactccttt ccctggactg
    23641 tgcggtgaca atcactaatc ggacggtatc ccgtgcggaa gagttggcta aattgtttgc
    23701 gcacactggc agtattcagg cgttgggtat ggacgaactg gaaggtcatg agtttgatct
    23761 cattattaat gcaacatcca gtggcatcag tggtgatatt ccggcgatcc cgtcatcgct
    23821 cattcatcta ggcatttatt gctatgacat gttctatcag aaaggaaaaa ctccttttct
    23881 ggcatggtgt gagcagcgag gctcaaagcg taatgttgat ggtttaggaa tgctggtggc
    23941 acaggcggct catgcctttc ttctctggca cggtgttctg cctgacgtag aaccagttat
    24001 aaagcaattg caggaggaat tgtccgcgtg aatcaggcca tccagtttcc ggacagggaa
    24061 gagtgggacg agaataaaaa atgtgtatgt tttcccgctc tcgtgaatgg tatgcaactg
    24121 acatgcgcga tctctggcga gagtctggcg tatcgcttta ctggagatac gccagaacag
    24181 tggttagcga gttttcgtca gcatcgctgg gacctggaag aagaagcgga aaacttaatt
    24241 caggaacaaa gtgaagatga tcaaggctgg gtctggttac cctgatccag atattcgtcc
    24301 ttccatttca cgtaattatt cgcggaatag agtaacccag ccttctcttc atcacttaac
    24361 gggcggatct gtttgacggg gctaccgaga tacagatatc cgctctccag ccgtttattt
    24421 tgtgggacca gactacccgc accaatcatc acatcatctt ctactattgc gccatcaagt
    24481 aaaattgagc ccatcccaac caaaactcga ttgccaatgg tgcagccgtg gagcatcacc
    24541 ttgtgaccaa cagtgacatc ttcgccaatg gttaatgggt tgccatctgg gttgtacgag
    24601 gatttatgag tgacatgcaa catactgcca tcctggatat tggtgcgtgc tccgatctgt
    24661 acataatgta catctccacg aatcacaacg agcggccaga tccccacatc atcagccaga
    24721 cgaacgtcac caatcacgac actgctatcg tcgatcatta cgcgctgacc gatttgtgga
    24781 aaaagatcgc ggtatgggcg taaaacatca gacatactta cctcagcaat aaatgattta
    24841 ctaatgactt tgggggcatt attggccttg tgcaagtctt ttagtatgca aaaaagcacc
    24901 gttttgtgtg cgattgcagc aaaaagggtg aaaaaacaac aaacagaaaa aaagatcaaa
    24961 aaaatacttg tgcaaaatat tgggatccct ataatgcgcc tccgttgaga cgacaacgtg
    25021 aaacacttca caggatggtc ggaacaacga agagaaaaaa tcctgaaatt caggggtgac
    25081 tctgaaagag gaaagcgtaa tatacgccac ctcgcgacag tgagctgaaa gccgcgtcgc
    25141 aactgctctt taacaattta tcagacaatc tgtgtgggca ctcgaagata cggattctta
    25201 acgtcgcaag acgaaaaatg aataccaagt ctcaagagtg aacacgt
//
LOCUS       DADMHM010000043        25110 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.044, whole genome shotgun sequence.
ACCESSION   DADMHM010000043 DADMHM010000000
VERSION     DADMHM010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 25110)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25110)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25110
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.044"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..602)
                     /locus_tag="JN125_001534"
     CDS             complement(<1..602)
                     /locus_tag="JN125_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HAY8871359.1"
                     /translation="MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLES
                     YPEALVMLDGDQDGEFCYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVP
                     RDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNK
                     EIGRALNISTGTVKAHLESLYRRLEVKNRTQAAMMLNISS"
     gene            1050..2021
                     /locus_tag="JN125_001535"
     CDS             1050..2021
                     /locus_tag="JN125_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY8871360.1"
                     /translation="MLEKTINNAICALLFRCEQQSVKEMDKIHAMQLFIKVAELESFS
                     RAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYYQRAKDVLSNLNE
                     LDGLFQQDATSISGKLRIDIPPGIAKNLLLPRLSEFLYLHPGIELELSSHDRPVDILH
                     DGFDCVIRTGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTP
                     HLGVHPLGFEVASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRIAVREALRA
                     GRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEHLD"
     gene            2070..3083
                     /gene="yhjD"
                     /locus_tag="JN125_001536"
     CDS             2070..3083
                     /gene="yhjD"
                     /locus_tag="JN125_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein YhjD"
                     /protein_id="HAY8871361.1"
                     /translation="MTQENEIKRPTQDLEHEPIKQLDNSEKGGKVSQALETVTTTAEK
                     VQRQPVIAHLIRATERFNDRLGNQFGAAITYFSFLSMIPILMVSFAAGGFVLASHPML
                     LQDIFDKILQNISDPTLAATLKNTINTAVQQRTTVGLVGLAVALYSGINWMGNLREAI
                     RAQSRDVWERSPQDQEKFWVKYLRDFISLIGLLIALIVTLSITSVAGSAQQMIISALH
                     LNSIEWLKPTWRLIGLAISIFANYLLFFWIFWRLPRHRPRKKALIRGTFLAAIGFEVI
                     KIVMTYTLPSLMKSPSGAAFGSVLGLMAFFYFFARLTLFCAAWIATAEYKDDPRMPGK
                     TQP"
     gene            3494..4816
                     /locus_tag="JN125_001537"
     CDS             3494..4816
                     /locus_tag="JN125_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
                     /protein_id="HAY8871362.1"
                     /translation="MQATATTLDHEQEYTPINSRNKVLVASLIGTAIEFFDFYIYATA
                     AVIVFPHIFFPQGDPTAATLQSLATFAIAFVARPIGSAVFGHFGDRVGRKATLVASLL
                     TMGISTVVIGLLPGYATIGIFAPLLLALARFGQGLGLGGEWGGAALLATENAPPRKRA
                     LYGSFPQLGAPIGFFFANGTFLLLSWLLTDEQFMSWGWRVPFIFSAVLVIIGLYVRVS
                     LHESPVFEKVAKAKKQVKIPLGTLLTKHVRVTVLGTFIMLATYTLFYIMTVYSMTFST
                     AAAPVGLGLPRNEVLWMLMMAVIGFGVMVPVAGLLADAFGRRKSMVIITTLIILFALF
                     AFNPLLGSGNPILVFAFLLLGLSLMGLTFGPMGALLPELFPTEVRYTGASFSYNVSSI
                     LGASVAPYIAAWLQTNYGLGAVGLYLAAMAGLTLIALLLTHETRHQSL"
     gene            complement(5050..7110)
                     /locus_tag="JN125_001538"
     CDS             complement(5050..7110)
                     /locus_tag="JN125_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417981.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HAY8871363.1"
                     /translation="MSKAGKITAAISGAFLLLIVVAIILIATFDWNRLKPTINQKVSA
                     ELNRPFAIRGDLGVVWERQKQETGWRSWVPWPHVHAEDIILGNPPDIPEVTMVHLPRV
                     EATLAPLALLTKTVWLPWIKLEKPDARLIRLSEKNNNWTFNLANDDNKDANAKPSAWS
                     FRLDNILFDQGRIAIDDKVSKADLEIFVDPLGKPLPFSEVTGSKGKADKEKVGDYVFG
                     LKAQGRYNGEPLTGTGKIGGMLALRGEGTPFPVQADFRSGNTRVAFDGVVNDPMKMGG
                     VDLRLKFSGDSLGDLYELTGVLLPDTPPFETDGRLVAKIDTEKSSVFDYRGFNGRIGD
                     SDIHGSLVYTTGKPRPKLEGDVESRQLRLADLGPLIGVDSGKGAEKSKRSEQKKGEKS
                     VQPAGKVLPYDRFETDKWDVMDADVRFKGRRIEHGSSLPISDLSTHIILKNADLRLQP
                     LKFGMAGGSIAANIHLEGDKKPMQGRADIQARRLKLKELMPDVELMQKTLGEMNGDAE
                     LRGSGNSVAALLGNSNGNLKLLMNDGLVSRNLMEIVGLNVGNYIVGAIFGDDEVRVNC
                     AAANLNIANGVARPQIFAFDTENALINVTGTASFASEQLDLTIDPESKGIRIITLRSP
                     LYVRGTFKNPQAGVKAGPLIARGAVAAALATLVTPAAALLALISPSEGEANQCRTILS
                     QMKK"
     gene            complement(7180..7947)
                     /gene="pdeH"
                     /locus_tag="JN125_001539"
     CDS             complement(7180..7947)
                     /gene="pdeH"
                     /locus_tag="JN125_001539"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417982.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-guanylate-specific phosphodiesterase"
                     /protein_id="HAY8871364.1"
                     /translation="MIRQVIQRISNPEASIESLQERRFWLQCERAYTWQPIYQTCGRL
                     MAVELLTVVTHPLNPSQRLPPDRYFTEITVSHRMEVVKEQIDLLAQKADFFIEHGLLA
                     SVNIDGPTLIALRQQPKILRQIERLPWLRFELVEHIRLPKDSTFASMCEFGPLWLGDF
                     GTGMANFSALSEVRYDYIKIARELFVMLRQSPEGRTLFSQLLHLMNRYCRGVIVEGVE
                     TPEEWRDVQNSPAFAAQGWFLSRPAPIETLNTAVLAL"
     gene            7960..9108
                     /locus_tag="JN125_001540"
     CDS             7960..9108
                     /locus_tag="JN125_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709304.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HAY8871365.1"
                     /translation="MFKSDAARTRQRLSARKGRTLPPGRGKFPHSTTESFRNTFWLKK
                     IMEHCFNIVDQQTTTAQTNANFLQIRFTTMSKKIAVIGECMIELSEKGADVKRGFGGD
                     TLNTSVYIARQVDPAALTVHYVTALGTDSFSQQMLDAWHGENVDISLTQRMENRLPGL
                     YYIETDSTGERTFYYWRNEAAAKFWLESEPSAAICEELANFDYLYLSGISLAILSPTS
                     REKLLSLLRECRANGGKVIFDNNYRPRLWASKEETQQVYQQMLECTDIAFLTLDDEDA
                     LWGQQPVEDVIARTHNAGVKEVVVKRGADSCLVSIAGEGLVDVPAVKLPKEKVIDTTA
                     AGDSFSAGYLAVRLTGGSAENAAKRGHLTASTVIQYRGAIIPREAMPA"
     gene            complement(9204..10700)
                     /locus_tag="JN125_001541"
     CDS             complement(9204..10700)
                     /locus_tag="JN125_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HAY8871366.1"
                     /translation="MQGTKIRLLAGGLLMMATAGYVQADALQPDPAWQQGTLSNGLQW
                     QVLTTPQRPSDRVEIRLLVNTGSLAESTQQSGYSHAIPRIALTQSGGLDAAQARSLWQ
                     QGIDPKRPMPPVIVSYDTTLFNLSLPNNRNDLLKEALSYLANATGKLTITPETINHAL
                     QSQDMVATWPADTKEGWWRYRLKGSTLLGHDPADPLKQPVEAEKIKDFYQKWYTPDAM
                     TLLVVGNVDARSVVDQINKTFGELKGKRETPAPVPTLSPLRAEAVSIMTDAVRQDRLS
                     IMWDTPWQPIREAAALLRYWRADLAREALFWHVQQALSASNSKDIGLGFDCRVLYLRA
                     QCAINIESPNDKLNSNLNLVARELAKVRDKGLPEEEFNALVAQKKLELQKLFAAYARA
                     DTDILMGQRMRSLQNQVVDIAPEQYQKLRQDFLNSLTVEMLNQDLRQQLSNDMALILL
                     QPKGEPEFNMKALQAAWDQIMAPSTAAAATSVATDDVHPEVTDIPPAQ"
     gene            complement(10921..12207)
                     /locus_tag="JN125_001542"
     CDS             complement(10921..12207)
                     /locus_tag="JN125_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dicarboxylate/amino acid:cation symporter"
                     /protein_id="HAY8871367.1"
                     /translation="MKTSLFKSLYFQVLTAIAIGILLGHFYPEIGEQMKPLGDGFVKL
                     IKMIIAPVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLIIVNVVQPG
                     AGMNVDPATLDAKAVAVYADQAKDQGIVAFIMDVIPASVIGAFASGNILQVLLFAVLF
                     GFALHRLGSKGQLIFNVIESFSQVIFGIINMIMRLAPIGAFGAMAFTIGKYGVGTLVQ
                     LGQLIICFYITCILFVVLVLGSIAKATGFSIFKFIRYIREELLIVLGTSSSESALPRM
                     LDKMEKLGCRKSVVGLVIPTGYSFNLDGTSIYLTMAAVFIAQATNSQMDIVHQITLLI
                     VLLLSSKGAAGVTGSGFIVLAATLSAVGHLPVAGLALILGIDRFMSEARALTNLVGNG
                     VATIVVAKWVKELDHKKLDDVLNNRAPDGKTHELSS"
     gene            complement(12390..14378)
                     /gene="hmsP"
                     /locus_tag="JN125_001543"
     CDS             complement(12390..14378)
                     /gene="hmsP"
                     /locus_tag="JN125_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm formation regulator HmsP"
                     /protein_id="HAY8871368.1"
                     /translation="MRVSRSLTIKQMAMVAAVVLVFVFIFCTVLLFHLVQQNRYNTAT
                     QLESIARSVREPLSSAILKGDIPEAEAILASIKPAGVVSRADVVLPNQFQALRKSFIP
                     ERPVPVMVTRLFELPVQISLGVYSLERPANPQPIAYLVLQADSFRMYKFVMSTLSTLV
                     TIYLLLSLILTVAISWCINRLILHPLRNIARELNAIPAQELVGHQLALPRLHQDDEIG
                     MLVRSYNLNQQLLQRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTTALMIIT
                     CETLRDTAGVLKEAQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHA
                     ITLGQQVLTIMSERLPIERIQLRPHCSIGVAMFYGDLTAEQLYSRAISAAFTARHKGK
                     NQIQFFDPQQMEAAQKRLTEESDILNALENHQFAIWLQPQVEMTSGKLVSAEVLLRIQ
                     QPDGSWDLPDGLIDRIECCGLMVTVGHWVLEESCRLLAAWQERGIMLPLSVNLSALQL
                     MHPNMVADMLELLTRYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDF
                     GMGYAGLRQLQHMKSLPIDVLKIDKMFVEGLPEDSSMIAAIIMLAQSLNLQMIAEGVE
                     TEAQRDWLAKAGVGIAQGFLFARPLPIEIFEESYLEEK"
     gene            complement(14460..17920)
                     /gene="bcsC"
                     /locus_tag="JN125_001544"
                     /pseudo
     CDS             complement(14460..17920)
                     /gene="bcsC"
                     /locus_tag="JN125_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026226.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsC"
     gene            complement(17902..19008)
                     /gene="bcsZ"
                     /locus_tag="JN125_001545"
     CDS             complement(17902..19008)
                     /gene="bcsZ"
                     /locus_tag="JN125_001545"
                     /EC_number="3.2.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase"
                     /protein_id="HAY8871369.1"
                     /translation="MNVLRSGIVTMLLLAAFSVQAACTWPAWEQFKKDYISQEGRVID
                     PSDARKITTSEGQSYGMFFALAANDRAAFDNILDWTQNNLAQGSLKERLPAWLWGKKE
                     NSKWEVLDSNSASDGDVWMAWSLLEAGRLWKEQRYTDIGSALLKRIAREEVVTVPGLG
                     SMLLPGKVGFAEDNSWRFNPSYLPPTLAQYFTRFGAPWTTLRETNQRLLLETAPKGFS
                     PDWVRYEKDKGWQLKAEKTLISSYDAIRVYMWVGMMPDSDPQKARMLNRFKPMATFTE
                     KNGYPPEKVDVATGKAQGKGPVGFSAAMLPFLQNRDAQAVQRQRVADNFPGSDAYYNY
                     VLTLFGQGWDQHRFRFSTKGELLPDWGQECANSH"
     gene            complement(19015..21345)
                     /gene="bcsB"
                     /locus_tag="JN125_001546"
     CDS             complement(19015..21345)
                     /gene="bcsB"
                     /locus_tag="JN125_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis cyclic di-GMP-binding
                     regulatory protein BcsB"
                     /protein_id="HAY8871370.1"
                     /translation="MKRKLFWICAVAMGMSAFPSFMTQATPATQPLINAEPAVAAQTE
                     QNPQVGQVMPGVQGADAPVVAQNGPSRDVKLTFAQIAPPPGSMVLRGINPNGSIEFGM
                     RSDEVVTKAMLNLEYMPSPSLLPVQSQLKVYLNDELMGVLPVTKEQLGKKTLAQMPIN
                     PLFITDFNRVRLEFVGHYQDVCENPASTTLWLDVGRSSGLDLTYQTLNVKNDLSHFPV
                     PFFDPRDNRTNTLPMVFAGAPDVGLQQASAIVASWFGSRSGWRGQNFPVLYNQLPDRN
                     AIVFATNDKRPDFLRDHPAVKAPVIEMINHPQNPYVKLLVVFGRDDKDLLQAAKGIAQ
                     GNILFRGESVVVNEVKPLLPRKPYDAPNWVRTDRPVTFGELKTYEEQLQSSGLEPAAI
                     NVSLNLPPDLYLMRSTGIDMDINYRYTMPPVKDSSRMDISLNNQFLQSFNLSSKQEAN
                     RLLLRIPVLQGLLDGKTDVSIPALKLGATNQLRFDFEYMNPMPGGSVDNCITFQPVQN
                     HVVIGDDSTIDFSKYYHFIPMPDLRAFANAGFPFSRMADLSQTITVMPKAPNEAQMET
                     LLNTVGFIGAQTGFPAINLTVTDDGSTIQGKDADIMIIGGIPDKLKDDKQIDLLVQAT
                     ESWVKTPMRQTPFPGIVPDESDRAAETRSTLTSSGAMAAVIGFQSPYNDQRSVIALLA
                     DSPRGYEMLNDAVNDSGKRATMFGSVAVIRESGINSLRVGDVYYVGHLPWFERVWYAL
                     ANHPILLAAISVILLAWILWRLLRIISRRRLNPDNE"
     gene            complement(21356..23974)
                     /gene="bcsA"
                     /locus_tag="JN125_001547"
     CDS             complement(21356..23974)
                     /gene="bcsA"
                     /locus_tag="JN125_001547"
                     /EC_number="2.4.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417990.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-forming cellulose synthase catalytic
                     subunit"
                     /protein_id="HAY8871371.1"
                     /translation="MSILTRWLLIPPVNARLIGRYRDYRRHGASAFSATLGCFWMILA
                     WIFIPLEHPRWQRIRAEHKNLYPHINASRPRPLDPVRYLIQTCWLLIGTSRKETPKPR
                     RRAFSGLQNIRGRYHQWMNELPERVSHKTQHLDEKKELGHLSAGARRLILGIIVTFSL
                     ILALICVTQPFNPLAQFIFLMLLWGVALIVRRMPGRFSALMLIVLSLTVSCRYIWWRY
                     TSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPVPLPKDMSLWPSVD
                     IFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQNVGVKYIART
                     THEHAKAGNINNALKYAKGEFVSIFDCDHVPTRSFLQMTMGWFLKEKQLAMMQTPHHI
                     FSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIA
                     VETVTEDAHTSLRLHCRGYTSAYMRIPQAAGLATESLSAHIGQRIRWARGMVQIFRLD
                     NPLTGKGLKFAQRLCYVNAMFHFLSGIPRLIFLTAPLAFLLLHAYIIYAPALMIALFV
                     LSHMIHASLTNSKIQGKYRHSFWSEIYETVLAWYIAPPTLVALINPHKGKFNVTAKGG
                     LVEEEYVDWVISRPYIFLVLLNLVGVAVGIWRYFYGPPTEMLTVVVSMVWVFYNLIVL
                     GGAVAVSVESKQVRRSHRVEMTMPAAIAREDGHLFSCTVQDFSDGGLGIKINGQAQIL
                     EGQKVNLLLKRGQQEYVFPTQVARVMGNEVGLKLMPLTTQQHIDFVQCTFARADTWAL
                     WQDSYPEDKPLESLLDILKLGFRGYRHLAEFAPSSVKGIFRVLTSLVSWVVSFILRRP
                     ERSETAQPSDQALAQQ"
     gene            complement(23971..24723)
                     /gene="bcsQ"
                     /locus_tag="JN125_001548"
     CDS             complement(23971..24723)
                     /gene="bcsQ"
                     /locus_tag="JN125_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsQ"
                     /protein_id="HAY8871372.1"
                     /translation="MAVLGLQGVRGGVGTTTITAALAWSLQMLGENVLVVDACPDNLL
                     RLSFNVDFTHRQGWARAMLDGQDWRDAGLRYTSQLDLLPFGQLSIEEQENPQHWQTRL
                     SDICSGLQQLKASGRYQWILIDLPRDASQITHQLLSLCDHSLAIVNVDANCHIRLHQQ
                     ALPDGAHILINDFRIGSQVQDDIYQLWLQSQRRLLPMLIHRDEAMAECLAAKQPVGEY
                     RSDALAAEEILTLANWCLLNYSGLKTPVGSAS"
     gene            complement(24735..24923)
                     /locus_tag="JN125_001549"
     CDS             complement(24735..24923)
                     /locus_tag="JN125_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871373.1"
                     /translation="MNNNEPDTLPDPAIGYIFQNDIVTLKQVFSLPDIDYADISQREQ
                     LAAALKRWPLLAEFAQQK"
BASE COUNT         5848 a         7011 c         6363 g         5888 t
ORIGIN      
        1 caggaggaga tatttaacat cattgccgcc tgggtgcgat ttttcacttc cagacggcga
       61 tacagggatt ccagatgcgc ttttaccgtt ccggtactga tattcagcgc tctgccgatc
      121 tccttatttg actcgcccgc cgctaacatg gttaaaatct cccgctggcg ggcgcttaac
      181 gatttgagat ctttaatgtc cttttccggc gtcgtccgcc agtctccagg cagaaacatc
      241 atccccatcg ccgcactatt taccgccaac gcaaatgtct cgacggttga atcacgaggc
      301 acaatggcca gcacattaaa atggataact tcctgtaacc accgtttatt gcaatccgtc
      361 gccgtgatta acaccttaac ctcaggaaac tgcaccacgg ttttttgcag caaccagtag
      421 caaaactcac catcctgatc gccatcgagc ataactaagg cttcagggta actttccagc
      481 ttttgccata actcgtctgc ctgactggcc ccctgaatac tcacccctgg aatacgctgc
      541 tgtaaactga ttttcattcc atgaataaat attgactgcc tgtcaaacat gactatttgc
      601 ataactgaat ctccacctga atatgttaaa aagacttaag tagtggaagg gtattacccg
      661 cgagaaaaaa taagaattcg ccatttggcg gtggccattc tacagagatg acgcgtagaa
      721 aatagttacc gatataaata gttacagcta aacgcctgaa attacatgtc gagggcacta
      781 tttaaaacaa ttttgaggat ttccttatat tggtggttag tacgcatgca attaaaaatg
      841 aaattccgcg actacaagcc aaaataacaa atggcaatga gacaaaaata agcacaaata
      901 gccaatacgt cctctattca ctttaaaggg aatcactgaa aaatacgctc tgtttaaggg
      961 gattcacctt tctcataaag ctattccgcc cttttcctgc tgagaaatcg ccacattcgt
     1021 catgacaaca ttgtgaaacc cggcattaga tgttagaaaa aacaataaac aatgcgatat
     1081 gcgcgttact gtttcgctgt gaacagcaat cggtcaaaga aatggataaa attcacgcaa
     1141 tgcagttgtt catcaaagtc gcggagctgg aaagtttttc ccgcgcagcg gatttctttg
     1201 ctttgccaaa gggaagtgtt tcgcgccaga tacaggcact ggaacatcaa cttggcaccc
     1261 agcttctcca gcgcaccacg cgacgggtca aactcacgcc agaaggcatg acctattatc
     1321 aacgggcaaa agatgtgttg agtaatctca acgaactgga cggtctgttt caacaggatg
     1381 ccaccagtat cagcggtaaa ttacgcatcg acatcccgcc aggaatcgcg aaaaacctgt
     1441 tactgccgcg cctgtcggaa tttctctatc tgcatccggg aattgagctg gaactgagta
     1501 gccatgaccg tccggtagat attcttcatg atggttttga ttgcgtgata cgcactggcg
     1561 cgttaccgga agatggcgtt atcgcccgtc ccctcggcaa actgaccatg gtcaactgtg
     1621 ccagtccgca ctatctgacg cgctttggtt atccgcaaag ccccgatgat ctgacttcac
     1681 acgcaatagt gcgttataca ccgcacctgg gtgtacatcc gttaggtttt gaggttgcca
     1741 gcgttaatgg cgtccagtgg tttaagtctg gcggcatgtt gacggtaaat agtagcgaaa
     1801 actatctcgc cgccggtctt gccggtctgg ggattattca gatcccgcgc attgccgtgc
     1861 gcgaagccct gcgtgccggg cggcttattg aagtattacc tggctaccgt gccgagccgc
     1921 tctccctttc gctggtttac ccgcagcgtc gggagctttc ccggcgtgta aacctgttta
     1981 tgcagtggct ggctggcgta atgaaagagc acctggactg accgactata ctttttaaga
     2041 atgaccacga cagaaggaca aaagagcgga tgacgcagga aaacgagatc aaacgtccca
     2101 cccaggatct ggagcacgag ccgattaagc agttggataa tagcgagaaa ggcggcaaag
     2161 ttagccaggc gctggaaacc gtcaccacca ctgccgaaaa agtccaacgc caaccggtta
     2221 ttgcgcacct gattcgcgcg acagaacgct ttaacgatcg gctgggtaac cagtttggtg
     2281 cggctatcac ctatttctca tttttgtcga tgatcccgat tttgatggtg tcgtttgccg
     2341 cagggggctt tgtgctggcc tcccatccga tgttgctaca ggatatcttc gacaaaattc
     2401 tgcaaaacat cagcgatccg acactagccg ccacgttgaa aaacaccatc aacaccgccg
     2461 ttcagcagcg tacgactgta gggcttgtcg gcctggcggt ggcactttat tccggcatca
     2521 actggatggg taacctgcgt gaagcgattc gtgcccagtc gcgcgatgtc tgggaacgct
     2581 cgccgcaaga tcaggagaag ttctgggtaa aatatctgcg tgattttatt tcactgattg
     2641 gtttgttgat tgcgctgatt gtgacgcttt cgatcacctc ggttgccggt tcggcgcagc
     2701 aaatgattat tagcgccctg cacctgaaca gcattgagtg gctgaaaccg acgtggcgat
     2761 tgattggcct ggcgatttcc atcttcgcca actatctgct tttcttctgg atcttctggc
     2821 ggttgccgcg ccaccgtccg cgcaaaaaag ccctgattcg cggaacattt ctggctgcta
     2881 ttggttttga agtgattaaa atcgtgatga cctacaccct gccatcgctg atgaaatccc
     2941 cctctggcgc agcatttggt tccgtgctgg ggctgatggc atttttctac ttcttcgccc
     3001 gtttgacgct gttttgcgcg gcgtggattg ccaccgccga atataaagac gacccgcgaa
     3061 tgccagggaa aacgcagcct taaaataggc cggatgcggc gtaaacgcct tatccggcat
     3121 acgattttat tcggcctggc tccccgtagg ccggataaga tgcgccagca tcacatccgg
     3181 ctataatgcg cacataacct cttgaaactc gtccccagag cctcttcagc catctattta
     3241 ggagcaaaca atttcattct aactcataac cccagcatat aaatccagtt ggtaactttt
     3301 atttaacctg aaaccagttt tatccactat ttataaagtt atgtgaagca tttcatagaa
     3361 gaaaaatcac tggcctaaac attatcccct ttttgcctgg tttttgacca ttcccgcgat
     3421 ttgttacaca ttgaaatatc acttttgctg tgcgtaatat ggctattcgt tagccaaaaa
     3481 ataagaaaag attatgcaag caacagccac aacactcgac cacgagcaag aatacacgcc
     3541 gatcaactcg cgtaataaag tccttgtcgc ctctctcatt ggcacagcca ttgagttctt
     3601 cgacttttac atttacgcca ctgcggccgt tattgtgttt ccgcatatct tcttcccgca
     3661 gggcgatcct acggcagcaa cgctacagtc gctcgccacc ttcgccatcg ccttcgtcgc
     3721 gcgccccatt ggctctgccg tttttggtca ttttggcgat cgcgttgggc gtaaagcgac
     3781 gctggtcgcc tcgttgctaa cgatggggat ttcgaccgtg gtgattggtc tgctgccagg
     3841 ctatgccacg attggtattt tcgccccgct gctgctggcg ctggctcgat ttggtcaggg
     3901 tctgggctta ggtggtgaat ggggcggcgc ggcgctgctg gcgactgaaa acgccccacc
     3961 gcgcaaacgt gcattgtacg gctccttccc gcagctgggc gcaccgattg gcttcttctt
     4021 tgccaacggc actttcttgc tgctttcctg gctactgacc gacgagcagt ttatgagctg
     4081 gggctggcgt gtgccattta tcttctcggc ggtgctggtc attatcggcc tgtatgttcg
     4141 cgtgtcgctg catgagtcgc cggtgtttga gaaagtcgct aaagcgaaaa aacaggtgaa
     4201 gatcccgctg ggtacgctgc tgaccaaaca tgttcgcgta accgtactgg gtacgttcat
     4261 tatgctggca acctatacgc tgttttacat catgacggtc tactctatga cctttagtac
     4321 cgccgccgcg ccagttgggc ttggcctgcc gcgtaacgaa gtgttgtgga tgttgatgat
     4381 ggcagttatt ggttttggcg tgatggtgcc agtcgctgga ttactggctg atgcctttgg
     4441 tcgccgtaaa agcatggtaa tcatcaccac gctgatcatc ctattcgcgc tattcgcctt
     4501 taaccctttg ctcggttctg gcaacccgat tctggttttt gccttcctgc tgctggggtt
     4561 aagtctgatg gggctgacct tcggtccgat gggcgcgctg ttaccagagc tgttcccgac
     4621 agaagtgcgt tacaccggag catcgttctc ttacaacgta tcgtcgattc tcggggcttc
     4681 cgttgcgccg tatatcgcag cctggttgca gactaactac gggttaggtg cggtggggtt
     4741 atatctggcg gcgatggctg gcttgacgtt aatcgccctg ctgctgaccc atgagacgcg
     4801 acatcagtcg ttgtaagtat cgtgtgggca gccaccctca ccccagccct ctccctgaaa
     4861 gggagaggga gaaaagcgga gcgagatgtt atatcgcgaa cataacagcc ctcccccaga
     4921 aagtgaacgg aaaagcggta ctcgttgttt caacacgcac aaaacagtcc cctcgcccct
     4981 ttggggagag gattagggtg aggggaacac gctgctcccg aactcaccag caaacacaat
     5041 ccaacctcat cacttcttca tctgcgacaa tatcgtccga cactgattag cctccccttc
     5101 ggaaggtgag atcagtgcca ataacgccgc cgccggtgtt accagcgttg ccagtgccgc
     5161 cgcaacggca ccacgggcaa tcagcggtcc ggctttcacc ccagcctgcg gatttttaaa
     5221 cgtcccacgc acatacagcg gcgaacgcag tgtgataatc cgaatccctt tactctccgg
     5281 atcaatagtc aaatccagct gttccgaagc aaaacttgcc gtgccggtaa cattaatcaa
     5341 cgcgttctca gtatcgaaag caaaaatctg cgggcgcgct acgccgttgg caatattcag
     5401 attcgccgcc gcgcagttca cccgcacctc atcgtcacca aatatcgcac cgacaatgta
     5461 gttgccgaca ttcagcccaa caatctccat caggttgcgg ctcaccagcc cgtcattcat
     5521 caacagtttc aggttgccgt tactgttgcc taaaagcgcc gccaccgagt taccgctacc
     5581 gcgtagttcc gcgtcaccgt tcatttcccc cagcgtcttc tgcatcagtt ccacatcggg
     5641 catcagttct ttcagtttca gtcgacgagc ctgaatatct gcccgcccct gcatcggctt
     5701 tttatcgcct tccagatgga tattcgccgc aatgctgccg cccgccatgc caaatttcag
     5761 cggttgcagg cgcaggtcag catttttgag gatgatatga gtagaaagat cgctaatcgg
     5821 caggctactg ccatgctcga tacgtcggcc tttgaagcga acatcggcat ccataacgtc
     5881 ccatttatcg gtttcgaagc ggtcataagg cagcactttg cccgcaggct gaacgctttt
     5941 ttcgcccttc ttctgttcag accgtttcga cttttctgcc cctttccccg aatcaacgcc
     6001 aatcaacggt cccaggtccg ccagccgcaa ttgccgcgac tcgacatcac cttccagttt
     6061 tggtcgtggc tttccggtgg tgtagaccag agaaccgtgg atatcgctat cgccaattcg
     6121 tccattaaaa ccgcgataat caaagaccga cgatttttca gtgtcgattt tcgctaccag
     6181 ccgaccatcc gtttcaaacg gcggggtatc gggcagcaga acgcccgtca gttcatagag
     6241 atcacccagt gaatcgccag aaaatttaag ccgtaaatcg acaccgccca tcttcattgg
     6301 gtcattcacg acgccatcaa aagcaacacg ggtattacct gaacggaaat cagcctgtac
     6361 cggaaacggc gtcccttcgc cacgcagcgc cagcataccg cctatttttc ccgtacccgt
     6421 gagcggttca ccgttataac gtccctgcgc cttcaggcca aaaacgtaat cgcccacctt
     6481 ttctttatcc gctttacctt tcgatccagt aacttcgctg aacggcagcg gcttgcctaa
     6541 cggatcaaca aaaatttcca gatccgcttt gcttactttg tcatcaatgg cgatccgccc
     6601 ttgatcgaaa agaatattat ccagccgaaa cgaccatgcc gacggctttg cattcgcgtc
     6661 tttgttatca tcgttggcga gattaaacgt ccagttattg ttcttttcgg agaggcgaat
     6721 caggcgcgcg tcgggctttt cgagcttgat ccacggcagc cagaccgttt tggtcagcag
     6781 cgccagcggt gccagcgttg cctctactcg cggcaaatgc accatcgtga cttcgggaat
     6841 atccggtgga ttgccaagaa tgatgtcttc tgcatgtaca tgaggccacg gcacccagct
     6901 gcgccagcca gtttcttgtt tttgccgctc ccacaccacg cccagatcgc cacggatagc
     6961 gaacggacga ttcaactccg cagagacttt ctggttgatg gtcggtttga gtcgattcca
     7021 gtcaaaagtt gcaatcaaaa tgatcgccac gacaatcaac aacaagaaag cccctgaaat
     7081 cgcagcggtt attttgcctg ccttgctcat cgttcgcttc ctcatattct tcctgtgcca
     7141 gtcctaaaga tagtccagcc aggcggaaaa tgaggcagct tatagcgcca gaaccgccgt
     7201 attcagcgtt tctatcggtg ccgggcgtga aagaaaccag ccttgtgcgg cgaatgcggg
     7261 cgagttctgt acatcacgcc actcttccgg cgtttctacg ccctcaacaa tcaccccgcg
     7321 acaatagcga ttcattagat gtaaaagctg agaaaagagt gtgcgtcctt ccggcgactg
     7381 acgcagcatc acaaacagtt ctcgcgcgat tttgatgtag tcataacgca cttcacttag
     7441 tgcagagaaa tttgccatcc cggtaccaaa atcacccagc cacagcgggc caaattcaca
     7501 catcgaggca aaggttgaat ctttcggcag acggatatgc tccaccagtt cgaaacgcag
     7561 ccagggaaga cgctcaattt ggcgcaggat ttttggttgc tgacgcaggg cgatgagcgt
     7621 agggccatca atattgaccg atgccagcag gccgtgctct ataaagaagt cggctttttg
     7681 cgccagcaaa tcaatctgct ctttcacaac ctccatccga tggctgacgg tgatttcagt
     7741 aaaatagcga tccggcggca ggcgttgcga agggttcaag ggatgcgtga ccaccgttaa
     7801 tagctccacg gccattaacc gcccgcatgt ttgatagatc ggctgccagg tgtaagcacg
     7861 ctcacactgc aaccaaaaac gccgttcctg caagctctcg atgcttgctt cagggttgct
     7921 tattcgctgg ataacctgcc ttatcatcaa agatgtcctg tgtttaaaag tgatgctgcc
     7981 cggactcgac aaagattatc ggcgcgtaag ggcagaactt taccgcctgg ccggggtaaa
     8041 tttcctcact ccacaacgga atctttcagg aatacgttct ggctcaaaaa aataatggaa
     8101 cactgtttta atattgttga ccagcaaacc accacagcgc aaactaacgc taatttttta
     8161 cagatcaggt tcacgactat gtccaaaaag attgccgtga ttggcgaatg catgattgag
     8221 ctttccgaga aaggcgcgga cgttaagcgc ggtttcggcg gcgataccct gaacacttcc
     8281 gtctatatcg cccgtcaggt cgatcctgcg gcattaaccg ttcattacgt aacggcgctg
     8341 ggaacggaca gttttagcca gcagatgctg gacgcctggc acggcgagaa cgttgatatt
     8401 tccctgaccc aacggatgga aaaccgtctg ccgggccttt actacattga aaccgacagc
     8461 accggcgagc gtacgttcta ctactggcgg aacgaagccg ccgccaaatt ctggctggag
     8521 agtgagccgt ctgcggcgat ttgcgaagag ctggcgaatt tcgattatct ctacctgagc
     8581 gggattagcc tggcgatctt aagcccgacc agccgcgaaa agctgctttc cctgctgcgc
     8641 gaatgccgcg ccaacggcgg aaaagtgatt ttcgacaata actatcgtcc gcgcctgtgg
     8701 gccagcaaag aagagacaca gcaggtgtac caacaaatgc tggaatgcac ggatatcgcc
     8761 ttcctgacgc tggacgatga agacgcgctg tggggtcaac agccggtgga agacgtcatt
     8821 gcgcgcaccc ataacgcggg cgtgaaagaa gtggtggtga aacgcggggc ggattcttgc
     8881 ctggtgtcca ttgctggcga agggttagtg gatgttccgg cggtgaaact gccgaaagaa
     8941 aaagtgatcg ataccaccgc agctggcgac tctttcagcg ccggttatct ggcggtacgt
     9001 ttgacgggcg gcagtgcgga aaacgcggcg aaacgcgggc acctgaccgc aagtaccgtt
     9061 attcagtatc gcggcgcgat tatcccgcgt gaggcgatgc cagcgtaaac gcagcatatg
     9121 caaaaggctg gataaagtgt tacccctcta tccagctcat ccataaatac ctgatggttg
     9181 tgctaactca tcaccatcag gcattactgt gcaggtggaa tatccgtcac ttcaggatgt
     9241 acgtcatccg tggcgacaga ggtggcggca gcagcagtcg atggggccat gatttgatcc
     9301 caggccgcct gcaacgcttt catgttaaat tccggctcgc ctttcggctg cagcagtatt
     9361 aacgccatat cattcgacaa ctgctgacgc agatcctgat ttaacatctc caccgtcagg
     9421 ctgttaagga aatcctgccg cagtttctga tactgctccg gcgcgatatc gacgacctga
     9481 ttttgcaacg aacgcatccg ctgacccatc agaatatcgg tatcagcccg cgcataggcg
     9541 gcaaacagtt tctgcagctc cagtttcttt tgcgccacta acgcattgaa ctcttcttcc
     9601 ggcagacctt tatcgcgaac cttcgccagt tcacgcgcca ccagattaag gttgctgttc
     9661 agcttgtcgt ttggtgattc gatgttgatg gcacactgcg cacgcagata cagcacacgg
     9721 cagtcaaatc caagaccgat gtctttgctg ttactggcgc ttaacgcttg ctgaacatgc
     9781 cagaacagcg cctcgcgggc taggtccgca cgccagtagc gcagcagtgc ggctgcttca
     9841 cgaatcggct gccacggcgt atcccacatg atagataacc ggtcctgacg caccgcgtca
     9901 gtcataatac tcaccgcttc cgcacgcagc ggagaaagcg tcggcaccgg agctggcgtt
     9961 tcacgtttgc ctttcagttc gccaaacgtt ttgttgattt ggtcgacaac cgagcgcgca
    10021 tccacgtttc ccaccaccag tagcgtcatt gcatccgggg tgtaccattt ctgatagaaa
    10081 tctttaattt tttccgcttc aacgggttgt ttcagcggat cggcaggatc gtgacctaac
    10141 aaggttgacc ctttcagacg atagcgccac cagccctctt tagtatcggc aggccaggtt
    10201 gccaccatgt cctgactttg cagcgcgtgg ttgatggttt ctggtgtgat ggtcaatttg
    10261 ccagtggcat ttgccagata agagagcgct tctttcagca aatcgttacg gttattgggc
    10321 aaactcagat taaacagcgt ggtgtcataa gagacaatta ccggcggcat cgggcgttta
    10381 gggtcgatcc cctgctgcca caatgaacgc gcctgtgctg cgtcaaggcc accgctttgc
    10441 gttagcgcaa tacgagggat ggcgtgactg taaccgctct gttgtgtact ttcggcgagc
    10501 gaaccggtat taaccagcag gcgaatttca acacgatcgc tgggacgctg gggggtggtc
    10561 agcacttgcc actgtaaacc gttggaaagc gtcccctgtt gccatgctgg atcaggctgg
    10621 agcgcatctg cctgcacata gccagcagtg gccatcatca gcaaaccgcc cgctaaaagt
    10681 cgaatttttg tgccctgcat gtgaacccct gatcaactat cctggtaata aaaaaactgc
    10741 ccgttgtcag tcagtctaaa tgacgttaaa aacacttcgt gttagaccgc aagaacatga
    10801 aaatgtcacg gaagaagtga aataaacctg aactcaccca ggtggtaagt tcaggcacag
    10861 gggtcaatta tgcgcaaaca cccgcactcg gggaagggag tgcgggcata agtggtgaga
    10921 ttaagaggat aattcgtgcg ttttgccatc cggcgcacga ttattcagca catcgtccag
    10981 ttttttgtgg tccagttctt tcacccactt agcaacgaca atggtcgcta cgccgttacc
    11041 gaccaggtta gtcagcgcac gagcttctga cataaagcgg tcgataccga ggatcagcgc
    11101 cagacccgct accggcaaat ggcccaccgc agagagcgtc gccgccagca cgataaagcc
    11161 actacccgtt acccctgccg cccctttaga agaaagcagc aacacgatta acagcgtgat
    11221 ttggtggacg atatccatct gactgttagt ggcctgggcg ataaacaccg ccgccattgt
    11281 caggtatatc gatgtgccat caaggttaaa cgagtagcct gtcgggatga ccagccccac
    11341 caccgatttg cggcagccga gtttctccat cttgtcgagc atacgcggca gcgccgactc
    11401 ggaagatgaa gtccccagta caatcagcag ttcttcacgg atgtagcgga taaatttgaa
    11461 gatactgaaa ccagtcgctt tagcgattga acccaatacc agcaccacaa acaggataca
    11521 ggtaatatag aaacagataa tcagctgccc cagttgcacc agtgtgccga cgccgtattt
    11581 accgatggta aacgccattg ccccgaacgc accaataggt gccagacgca tgatcatatt
    11641 gatgatgccg aagatgacct gcgagaaact ttcgatcacg ttaaaaatca gttggccttt
    11701 gctgcccaga cggtggagcg caaaaccaaa cagtacggca aacagcagca cctgcagaat
    11761 gttaccgctg gcaaatgcgc caatgacgct cgccgggatg acatccataa tgaaggcgac
    11821 aatgccctgg tctttcgcct gatcggcgta aaccgctacc gctttcgcat caagcgttgc
    11881 cggatcgacg ttcattccgg caccaggctg cacgacgtta acgatgataa gaccaataat
    11941 cagcgcgatg gtactgacaa tttcaaagta aagcagtgcg actgcgccgg tacgaccgac
    12001 cgccttcatg ctttccatgc ccgcaatgcc cgttacgacg gtacaaaaga tgacaggagc
    12061 gatgatcatc ttaatgagct taacgaagcc gtcgccaagc ggtttcattt gctcgcctat
    12121 ttcaggatag aaatggccaa ggagaatacc aatggctatc gctgtcagga cctgaaagta
    12181 aaggctttta aacagagagg ttttcatagg atgtccttta gtaaaactac aggtcttgta
    12241 aggttatgag gtacctgcgg ccttaaaata acacccagac aacatcacag aaatgtacct
    12301 ggatcataat tgaaacaaaa aggttaaaaa gtttgagctg gctcgcacaa accagcactt
    12361 tttaaagttt tgtaatcagt ttggggtagc tacttttctt ccaggtaact ctcttcgaag
    12421 atttcaatag ggagtgggcg agcaaaaagg aagccctggg caataccaac gcccgctttt
    12481 gccagccagt cgcgttgtgc ttcagtctcc acgccttcgg caatcatttg taagttcagg
    12541 ctctgcgcca gcatgataat tgcagcaatc atgctgctat cttccggcaa gccttcaaca
    12601 aacattttgt cgattttcag tacgtcgatt ggcaacgatt tcatatgctg cagctgacgc
    12661 agccctgcgt agcccatgcc gaaatcatcc agcgccaccc gaactccggc attgcgcagc
    12721 ggacggagga ttgccaccgc agcatgaggg tcgtcaatac gtcggctttc tgtcacttcc
    12781 agaatcagtg ttcccggctg aatgcgatag cgggttaaca gttccagcat atccgccacc
    12841 atatttgggt gcatcagttg cagcgcagag aggtttaccg acaagggcag cataatgccg
    12901 cgctcttgcc aggctgcaag caatcgacag gactcttcca gcacccagtg accgacggta
    12961 accatcagcc cacagcactc aatgcgatcg attaagccat ccggcaggtc ccaactgcca
    13021 tccggttgct ggatacgcag taacacttcc gcactgacca gtttaccgct ggtcatctcg
    13081 acctgtggct gtaaccaaat agcaaactga tgattttcca gtgcattaag gatatcgctc
    13141 tcttccgtca accgcttctg ggcggcttcc atctgctgcg gatcaaagaa ctgaatctga
    13201 ttcttgcctt tatggcgagc ggtaaatgcc gcagaaatag cgcgactgta aagctgttcg
    13261 gcggtgagat cgccgtagaa catcgccacg ccaatgctac agtgcggacg gagttgaata
    13321 cgttcaatcg gcaggcgctc gctcatgata gtgagcactt gctgacctaa ggtgattgcg
    13381 tgccacggtt cctgtacacc gttggcaatg acagcaaagt cataaccgct aatctgcgcg
    13441 aggatcatac gtggcgacag taccgatttg agtttttcca ccagcgtcag cagcagaatt
    13501 tctcgttgcg cctctttcag cacgcccgca gtatcacgca gggtttcaca ggtgatgatc
    13561 atcagcgcgg tggtttgttt acgcgcgaca acctgctcca gcatctccat cagcaaggct
    13621 ttgttcggca aatccgacac cgggaagcgc atcgcatttt cgttctgttc ttcataatgg
    13681 cgctgcagca attgctggtt gaggttgtaa ctgcgcacca acataccgat ttcatcgtcc
    13741 tgatgcagac gcggtaatgc cagttggtga ccaacaagct cctgggctgg gatggcgtta
    13801 agttcgcgag caatattgcg taacggatgc aaaatcaggc ggttaatgca ccagctgatg
    13861 gcgacggtca ggataagcga caaaagtaag taaatggtca ctaacgttga gagggtgctc
    13921 atcacgaact tatacatacg gaaggaatcc gcctgtagta ccagataggc aattggctgc
    13981 gggtttgccg gacgttcgag cgagtaaacg cccagcgaga tttgaaccgg tagctcaaac
    14041 aggcgagtaa ccattaccgg caccgggcgc tctggaataa aacttttacg cagcgcctgg
    14101 aactggttag gcagcactac atcggcacgg ctgaccacgc ctgccggttt aatgctggca
    14161 agaatagctt ccgcttcggg aatatcgcct ttcaaaatag ctgaagataa gggttcgcgt
    14221 acagagcgag caatgctttc cagttgcgta gccgtgttat agcgattctg ctggaccaga
    14281 tggaacagca aaacggtgca aaaaataaaa acgaacacca ggacaacggc tgccaccatt
    14341 gccatctgct tgattgttaa cgagcgactt acgcgcaaat tgtctccccc cggaaatccc
    14401 agattgccgc ccgagtatac ccgatcgcag cggcattaag agaggcgcta tctgaaaact
    14461 taccagtcgg cgtaaggtat cagcggctgc ggcggtaaat ccatgtcacc ctgccatccg
    14521 gcggcggaat aacgtacgta gagcaggaaa tggctgggtg cgtaatcttt cgcctgctgg
    14581 atatcaattg ccgtgccaac aaaccagttg gaagtaacac gtcgttcaag taatgcccgc
    14641 gccgtgtagc cgaagccctg actgctgccg ccatcgttgg attgccgcgc agcttcttcc
    14701 tgccagtcgg tcgggatcag attcatcagc ggataacgca gcatggtttt ggtgcgtgaa
    14761 tgcgaccacg agccagacgc ccccagctcc cacgaccagt tttccgtgcg ctcccgccac
    14821 atcaccggta tagcaaacga caggtattcc tgcggactgt agtaaccgcc ctgaccgagt
    14881 gagtagccac tcagatcttt gtcgtaatgc cagatcatgt tgttcaggcc gattgtgacg
    14941 cggcgattgt tctggttaat gaccttatag taatagcccg tcatccagcg cacgcgccag
    15001 ttatcttcga catttttacc ggttaactgg tcgccactaa gcgatgccct gacgccgttt
    15061 gcttcacctt tatcgtagct cagacttagc cccacaccgt cggcacgtac gccaccccat
    15121 tttttcccgg tattgctcgg ggagtctttt tgcccaccaa aggccagcaa agaactggag
    15181 atgggccgac ggtgggcgtt aacggtgtaa cccagcggcc cgatatcatc gctgtaactg
    15241 atgccgccga ccacatccac cacgttgaag cccatcggcg tggtaccgat atcccagctc
    15301 cagacgtcat ttcgccagcc gaccgccacg ctggcaccgg agtccgactg gctgcggttg
    15361 ccactacagt cctgtaatgt acaggtgccc cagttgtcat cccatttgcc atcggcatta
    15421 gtggagaaac tgccgacgtt catattgacg aaatcactgc gaaagaacat ccgcccgtca
    15481 gaatacggcg catccacctg caacatggta gtgtgcgctt tcagatcgga gtaaccaccg
    15541 gtgccgctcg aaccccagta atcgtgctcg agggtgacgt taagatcctg ctggcgatag
    15601 aggcccgccg catcgctgcg cacgccgcgt ttcagccagt catctttctc gtcgttacgg
    15661 gtcagtcggg tgaatgtgtc gttatcctgc ggacgcgtcg tagtcacacc ggatgcgacc
    15721 atggcgtctt tgtaggtttc cagcgcctgc tttggatcgc ccgcctgcgc ttcaaacttc
    15781 gcaccatcgc gctttccatc gacggtggct gagattttgc ctgcaggatc aacttattaa
    15841 acgtctgctg cgccgctgcg gtatctccaa gctgcgcctg cgccagcgcc acgcgccgct
    15901 gtgtgttcag cgaggcgtta tcggtagcgg gcagtttcgc cagctggcta cgtgccgccg
    15961 ctgtgtcacc ggcagcaata tccacttccg tcagccccag aatggcatcg gcgttagttg
    16021 gctccagcgt caggacattc tgatatgcag cgcgggcggc ggtgtaatca cgtcgctgct
    16081 gcgcccagtc agccagcgtg aggtcaatac gcgtggaagg tggttgctga cgcagcatcg
    16141 cttctgcttc agcttctttg ccgctttctc gcaggcgatt agcggtttcc agcacctgat
    16201 cgctttgcag tcgattaacc agctcctgaa tattgctgtt ccactgcgcg cgcggcaggc
    16261 tgttgatatg cgccagcgcc gctctgtcct ggtcatgacc agagaggtac agcccgtaag
    16321 cgtaaacctg ctccgggtcg ttcggcttct gctgcgccag attgcgcatt aacgtatcgg
    16381 cctggctgcg ttgtccggcc tgccagagat cctgcgaaag tcggtaagta atccatacgc
    16441 tgccggggtc cagcgccagt cgttgccgct gaagtgctgc cgcctgcgcc catttgccct
    16501 ggttttccag tgcctctgcc tgctgtgcca gacggtcgtt ttgcaggctg cgttcgatat
    16561 catcaatgct acgccgctga ctggcagaga gcgaggcgat aaacgcttca gctttttctg
    16621 gcgattgctg gcggtaaata tttgccagcc cgcgcacggc gttagtgttg ccgctgtcca
    16681 tacgcaaggt ctgctgataa taacgttcgg cggcgggata atcttttcgc gccatcgcca
    16741 catcgcccag ccccagcact gcataactgt cggtgttatc gacattacgc gcctgctgga
    16801 acaggcgttc tgcccggtca ggattattgg ctttcagcgc agcatcgccc tgctggatcg
    16861 ccagccagta gcggtttact ttcagcagac tgttccattt gtcgttgttg ctgctgtgcg
    16921 ggtccagtgc gagggctttt tccagattcg ccactgcatt ggcgcgatcg cctttctgag
    16981 aatacgcctg gcccagcgcc cccagagctt cactgtcttt cgggttcgcc cgcaccgcct
    17041 gttgtagttc gggaatggct ttacccgcca taccagagtc caccgccgct aaaccttgcg
    17101 cacgagcgcg gaaagcagga tcggccagct gtttttgctg ttctgccagt tgcgattgcg
    17161 cagccgccac gctatcgcca tcactaaaga tcgagagata ttttttcagc gccgacacac
    17221 tggcatcact gacgggcatg tctttaatct gcccgtacca gattttagag gccccttcgc
    17281 gcccggcgtt cgattttgcc atctgttcca ggacggcaaa accttcgtca cggcgatcgc
    17341 tactaaacag caatagcgcc agattgtttt gcaggcccgt attgcccggt gcatccgcat
    17401 tgatgcgttt taactgatta atcgcttcgc cacggcgagc cggaattttc gccaccgtac
    17461 tccagtactc gacagcaatg tcaccttccg gcggcgcacc gttgaacagt ttgttgtaac
    17521 tcgccacagc ttcttctgca tgaccggtcg tcgcctgcaa tcgtgcctgt tgcagtacct
    17581 gacgaccatc cggcgtggaa agtagcatcg tagtccgcga cgatttatac gcatttgaac
    17641 tcggcgctaa ctgcgacagc cgatcgagct gtttttgcgc gccatcaata tcgccctgac
    17701 gtaacaaaga acggaaacgg gcggcaacga cgtccgggtt attcggatca ataagttcca
    17761 gccgatataa cgactgttgc accagatctt cacgatgggt cgcttcgcct aaccgaactt
    17821 gctccagcaa ctgttgctga gcggttggtg ctgcctcgac catcggcatg acggacagac
    17881 cgagggaaag cgtgaatatg tttagtgtga atttgcgcat tcctggcccc agtcaggtaa
    17941 taactcacct tttgtcgaga agcggaaacg gtgttgatcc cagccttgtc caaacagggt
    18001 cagcacatag ttgtaatagg catcgctgcc gggaaagtta tcggccacgc gctggcgctg
    18061 aacggcctgc gcatcgcggt tttgtaaaaa gggcagcatg gcggcagaaa aaccgactgg
    18121 tcctttaccc tgcgctttcc ccgtagccac atccactttt tccggcggat aaccgttttt
    18181 ctcagtgaat gtcgccatcg gtttaaaccg gttgagcatc cgcgctttct gcggatcgct
    18241 gtcaggcatc atgcctaccc acatgtaaac gcggatggcg tcgtagctgc tgatcaatgt
    18301 tttttcggct tttagctgcc agcctttgtc tttctcataa cgcacccagt ctggcgaaaa
    18361 gcctttcggg gcggtttcca gcaataaacg ttgattggtt tcgcgcagcg tagtccacgg
    18421 cgcgccaaag cgggtgaaat actgcgccag cgtcggcggc aggtagctgg ggttaaaacg
    18481 ccagctgtta tcctcagcaa aacccacttt gcccggtaac aacatggaac ccagcccagg
    18541 caccgtcacc acttcctccc gcgcgatacg ttttagcaac gcgctgccga tgtcggtata
    18601 acgctgctct ttccacaaac gccccgcctc cagcaacgac caggccatcc agacatcacc
    18661 atcggaggcc gaattgctgt ccagcacttc ccacttactg ttctctttct tgccccacag
    18721 ccaggcgggc aaacgttctt ttaaagaacc ctgagcgaga ttgttctgcg tccagtcgag
    18781 aatattatcg aaagctgcac ggtcgttagc cgccagggca aagaacatac cgtaactttg
    18841 cccttcggag gtggtgattt tgcgcgcgtc gctggggtcg atgacgcgcc cttcctgact
    18901 gatgtaatcc tttttaaact gctcccaggc aggccaggta caggctgcct gaacactaaa
    18961 ggcagccaac aacagcatcg tcacgattcc actacgcaac acattcatct tcaattactc
    19021 gttatccggg ttaagacgac gacgactaat aattcgcagc agacgccaca gtatccatgc
    19081 cagcaatatc acactgatag ccgccagcag aatcggatgg tttgccagcg cataccacac
    19141 gcgctcgaac cacggcagat gacctacgta ataaacgtcg ccaacacgta ggctgttgat
    19201 accggactcg cggatcaccg cgaccgaacc gaacatggtg gcgcgtttgc cgctatcgtt
    19261 caccgcatcg ttaagcattt cataaccgcg tgggctatct gccaacagcg caatcacgct
    19321 gcgctggtcg ttatacggcg actggaagcc aatcaccgcc gccatcgcac cggaagaggt
    19381 cagcgttgac cgggtttctg ccgcgcgatc gctctcgtcc ggcacaatgc cggggaacgg
    19441 ggtctggcgc atcggtgttt tcacccagct ttcggtcgcc tgcaccaata ggtcgatctg
    19501 cttatcgtct ttcagtttgt ccgggatacc accgatgatc atgatgtcgg catctttgcc
    19561 ctgaatggtg ctgccatcat cggtcaccgt cagattaatc gccgggaagc ccgtctgtgc
    19621 gccgataaaa ccaacagtat tcagcaacgt ttccatctgt gcttcgttag gcgctttcgg
    19681 catcacggtg atggtttgcg acagatccgc catccggctg aatgggaagc ccgcgttagc
    19741 aaaggcgcgt agatccggca tcgggatgaa gtggtaatac ttcgagaagt cgatggtgga
    19801 gtcgtcacca atcaccacat gattctgcac cggctggaag gtaatacagt tatccaccga
    19861 accgcccggc atcgggttca tatactcaaa gtcgaagcgc agctggttgg tcgcgcccag
    19921 tttcagcgcc ggaatagaga catctgtttt gccatccagc aaaccttgta ataccggaat
    19981 ccgcagcagc aggcggttcg cctcctgttt gctgctcagg ttgaaggatt gcaggaactg
    20041 gttattcagg ctgatatcca tccgcgaact gtctttcacc ggcggcatgg tgtagcggta
    20101 attaatatcc atatcaatgc cggtactgcg catcaggtag agatccggcg gcaggtttag
    20161 cgaaacgtta atcgctgctg gctcaagacc gctggattgt aactgttctt cataggtttt
    20221 cagttcgcca aatgtgaccg gacgatcggt acgtacccag ttcggcgcat cgtacggctt
    20281 acgcggtagc agcggtttca cttcattcac taccacgctt tcaccacgga acagaatgtt
    20341 accctgagcg atacctttcg ctgcctgcaa caggtctttg tcgtcacgac caaacaccac
    20401 cagcagtttg acgtaaggat tctgcggatg gttgatcatc tcaatcaccg gggcttttac
    20461 cgccggatga tcgcgcagga agtccggccg tttgtcgttg gttgcaaaga caatggcatt
    20521 acgatccggc agttggttat agagcaccgg gaagttctgc ccacgccagc cagaacgcga
    20581 accaaaccac gaggcgacaa tggcagatgc ttgttgcagc ccaacatccg gcgcacccgc
    20641 aaagaccatc ggcaaggtgt tagtacggtt atcgcgcggg tcaaagaatg gcaccgggaa
    20701 gtgtgacagg tcattcttca cattcagggt ctgataggtc agatccagtc cactgctccg
    20761 cccaacatcc agccaaagcg tggtgctggc cgggttttcg cacacgtcct gataatggcc
    20821 gacaaactcc agccgcacac ggttgaagtc ggtaataaac agtgggttaa tgggcatttg
    20881 cgccagcgtt tttttaccca actgttcttt ggtcactggc agtacgccca tcagctcatc
    20941 attgagataa acctttaact gcgactggac aggcagtaac gatggcgatg gcatgtattc
    21001 gaggttgagc atcgccttcg tcaccacttc atcgctgcgc ataccaaact caatgctgcc
    21061 gttcgggtta atgccacgta gcaccatgct gcccggcggc ggcgcaattt gcgcaaaggt
    21121 cagcttcaca tcacgcgaag gaccgttctg cgccacgact ggcgcatcag cgccctgcac
    21181 gcccggcatc acttgcccca cctgcggatt ttgttccgtc tgggcggcta cagctggctc
    21241 agcattgatc agtggttgcg ttgctggcgt cgcctgcgtc atgaaagagg ggaacgcact
    21301 catccccata gccactgcac aaatccagaa tagttttctt ttcatcgcgt tatcatcatt
    21361 gttgagccaa agcctgatcc gatggttgtg ccgtttcgct ccgctccggg cggcgcagaa
    21421 taaacgatac aacccaggaa accaaagaag tcagcacacg gaatatgccc ttcaccgaag
    21481 aaggcgcaaa ctccgccaga tggcggtagc cacggaagcc gagcttcaga atatccagca
    21541 gactttccag cggcttatct tccgggtagc tgtcctgcca gagcgcccat gtatccgcac
    21601 gggcaaacgt acactgcaca aaatcgatat gttgttgggt ggtgagcggc attaatttca
    21661 gcccaacttc attacccatc acgcgcgcca cctgggtcgg gaagacgtat tcctgctgac
    21721 cgcgtttaag caacagattc actttctgcc cttccagaat ctgcgcctga ccgttgatct
    21781 tgatccccaa accaccgtcg gagaaatcct gaacggtaca cgaaaagagg tgaccatctt
    21841 cgcgggcaat tgccgcgggc atcgtcatct ccacgcggtg cgatcggcgt acctgtttgc
    21901 tttctaccga taccgcaact gcgccgccaa gaacaatcag gttgtagaac acccacacca
    21961 tactgacgac cacggtgagc atctcggttg gcgggccata gaagtagcgc cagatgccga
    22021 ccgcaacacc caccaggttg agcagaacaa ggaagatgta gggccgcgag atcacccagt
    22081 cgacgtactc ttcttccacc agtccacctt tggcggtgac gttaaatttg cctttgtgcg
    22141 ggttaatcag cgccaccagc gtcggtggtg cgatatacca cgccagcacc gtttcgtaga
    22201 tttcactcca gaaagagtgg cgatatttgc cctggatctt cgagttggtc aggctggcat
    22261 ggatcatatg cgacagcacg aacagggcga tcatcaacgc tggcgcatag atgatgtagg
    22321 catgaagcag caggaacgcc agcggcgcag tcaggaagat cagtcgtgga atgcccgaca
    22381 agaagtggaa catggcgttg acgtagcaca gccgctgggc gaatttcagc cctttaccgg
    22441 taagcgggtt atcgagacgg aagatttgca ccatcccgcg tgcccagcga atacgctgac
    22501 cgatatgcgc cgacagactt tcggtcgcca gccccgccgc ctgcggaata cgcatatatg
    22561 cagaggtgta gccacgacag tgcaggcgca gagacgtgtg cgcatcttcg gttaccgttt
    22621 cgacagcaat accgccaatt tcatccaatg gtttgcgacg aattactgca caggaaccgc
    22681 agaagaaagt ggcgtcccac atatcgttgc catcctgcac cagaccatag aacagagtgc
    22741 cttcgttcgg cgttttacga aaacgcccca ggttgcgttc aaacgggtcc ggcgagaaga
    22801 tgtggtgcgg cgtctgcatc atcgccagct gtttctcttt caggaaccag cccatggtca
    22861 tttgcaggaa cgatcgcgtt ggtacgtggt cgcagtcgaa aatcgatacg aactcgcctt
    22921 tggcatattt cagcgcattg ttgatgttgc ccgctttcgc atgttcatga gtggtgcggg
    22981 cgatatattt cacccccacg ttttgcgcaa actggcgaaa ctcttccctg ccgccgtcat
    23041 cgaggatcca gatgttcagt ttgtctttcg gccagtcgat acccagcgaa gcgtaaatgg
    23101 tatttttcac cacgttgaga tcttcgttgt aagtcgggac aaagatatcc accgacggcc
    23161 acagcgacat atctttcggc aatggcaccg gctgacgatt cagcggccat acgacctgga
    23221 agtagccgag caccagcaca atccacgcgt acgtttcagc gaagagcaga ataagcccgc
    23281 acaccaggct gaccggatcg tcccagttca gcgtagaggt gtaacgccac cagatataac
    23341 ggcaagaaac ggtcagcgac agcacaatca acattagcgc cgagaagcgc cccggcatcc
    23401 gccgtacgat cagcgctaca ccccacagca gcatcaggaa gataaactgc gccagcgggt
    23461 taaacggttg agtaacgcag attaacgcca gaatcagcga gaaggtgacg atgataccga
    23521 ggatcaaccg ccgcgccccg gcactcaaat gaccgagctc ttttttctca tcaagatgct
    23581 gtgttttatg gctaacgcgc tcaggcagct cgttcatcca ttgatggtaa cgtccacgaa
    23641 tattctgcag acctgaaaat gcccgcctgc gcggtttcgg cgtttctttg cgcgatgtac
    23701 cgatcagtaa ccagcatgtt tgaatgagat aacggaccgg gtccagcgga cgcggacgcg
    23761 aggcgttgat atgcggatac aggtttttat gttctgcgcg aatacgctgc cagcgcgggt
    23821 gctccagcgg aataaaaatc caggccagga tcatccagaa acagccgagc gtcgcgctga
    23881 aagccgacgc accgtgacga cgataatcgc gataacgccc gataagccgc gcgttgaccg
    23941 gcgggataag caaccaccgg gtcaggatac tcatgatgca ctcccgactg gcgttttcag
    24001 cccggagtag ttcaacaggc accagttcgc cagcgtcagt atctcttcag ccgccagcgc
    24061 atcactgcga tattcaccta ctggttgctt agccgccagg cattcagcca tcgcttcatc
    24121 acgatgaatg agcatcggca gtaatcggcg ctggctttgc aaccaaagct ggtaaatatc
    24181 gtcctgaacc tgactgccaa tacggaagtc attaatcaaa atatgtgcgc catccggcag
    24241 cgcttgctga tgcagtcgga tatggcagtt ggcatccaca ttgacgattg ccagcgagtg
    24301 atcgcacaaa ctcagcagct ggtgggttat ctgcgaggca tcacgcggta agtcgattaa
    24361 aatccactgg taacgcccgc tggcttttag ttgctgtaag ccggagcaaa tatcgctcag
    24421 ccgggtttgc cagtgctgtg gattttcttg ttcttcaatg gataactgac caaaaggcag
    24481 caaatcgagc tgcgaggtgt agcgcaaccc agcgtcacgc cagtcctggc catccagcat
    24541 cgctctggcc cagccctgac ggtgggtaaa atcaacatta aatgacaggc gcaacaagtt
    24601 gtccgggcag gcatcgacca ccaggacatt ttctcccaac atttgtaatg accaggctaa
    24661 tgcggcggtg atggttgttg tccccacgcc tccccgcacc ccctgcaatc ccagtacggc
    24721 cattcaccaa tcccctactt ttgttgcgca aactctgcca gcaacggcca gcgttttaat
    24781 gccgcggcca actgttcgcg ttgggaaata tcggcataat caatatcagg cagtgaaaat
    24841 acctgcttta acgtcacaat atcattctgg aagatatagc ctatcgcggg atcaggcaga
    24901 gtatctggtt cattgttatt cattttgctt gatccctatg aaataaccgt accgttcatg
    24961 agacaattct aaccgtgagc atttcgccgg tttattgttt acggcgagac gggaatttgc
    25021 tcactttttg actttccgtt acgcaacaga aaaagttaaa aacgaaaaga ctaaaatcac
    25081 acgtcttgtg accttctaaa ttgattcaca
//
LOCUS       DADMHM010000044        24196 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.045, whole genome shotgun sequence.
ACCESSION   DADMHM010000044 DADMHM010000000
VERSION     DADMHM010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 24196)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24196)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24196
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.045"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(130..1140)
                     /locus_tag="JN125_001550"
     CDS             complement(130..1140)
                     /locus_tag="JN125_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001494590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HAY8871374.1"
                     /translation="MDKITQVLFSDIGKVTTQYVEVPHQELKPHEVRIAPVFYGICGS
                     DLHVLKGGHPFAKPPVVPGHEIAARVTEVGSDVKNVQPGDHVVVDPIMACMECRACKA
                     GRFNLCEPPQVASFRAPGFARSQHIVPARNCHVAPASLPLKVLAFAEPAACARHCVNR
                     MPKASLESVLVIGAGTIGLSIVQALRIMGAGKITVIEPDAAKRALALKLGAAEVWALG
                     ELAADVRFTGAIDVVAAQATLNDACTRVYAGGTVVCMGVPSGPREIPLPMMQRFERDL
                     LNSGMYIPEDFDAVIEWLADGRFDTSELVTDLFAIEDAAAAFERAQQNDSIKVMLQFA
                     PE"
     gene            complement(1173..2060)
                     /locus_tag="JN125_001551"
     CDS             complement(1173..2060)
                     /locus_tag="JN125_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008786992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase"
                     /protein_id="HAY8871375.1"
                     /translation="MSSHFTPFTLKDISRPGGGFAMLAVDQREAMRLMFAAAGQPKPI
                     ADSVLTDFKVAATRILSPYASAVLADKQFCLEQIVEQGAVANSCGLIVAADLFIPGNG
                     IPVDSVEIDMSVDPHKAREMGAKAMKLLVLWREDEPAEERLAMVDKFVRRCRSAGLVS
                     IIEPVVRPPRRGWDFDRESAIVAAAAELGGTEADLYKAEMPLGGKGDEKTLLAACQQL
                     NDQMKMPWVILSSGVDADIFGRAVSIAMKGGASGFLAGRAVWASVVGAQDPQTMLRDV
                     SVPRLQRLAEIVDEGIAQR"
     gene            complement(2085..2963)
                     /gene="yihU"
                     /locus_tag="JN125_001552"
                     /pseudo
     CDS             complement(2085..2963)
                     /gene="yihU"
                     /locus_tag="JN125_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001318159.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sulfolactaldehyde 3-reductase"
     gene            3136..4032
                     /locus_tag="JN125_001553"
     CDS             3136..4032
                     /locus_tag="JN125_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000196715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HAY8871376.1"
                     /translation="MTRIACVGITVQDRIYSLPTLPEGGGKYQANHYLEIGGGPAATA
                     AVAIAKLGVEVDFIGRVGDDSCGNTLLAELEGWGVNTAFCRRYPNARSSQSAILVDQH
                     GERIIVNYPSPDLGTDAEWLEAIDFSRYDLILADVRWHSGTEKAFSLACLAGVTTLLD
                     ADMTPQDISPLVALADHAVFSTPGLKRMTGLQSPEEGLFQATTQTAGKVYVTLGSEGS
                     LWIEDGHLCQQEAFSVNVVDTTGAGDVFHGALAVALAEKMPTKEAIRFASAVAAMKCT
                     QPGGRAGIPNREQTESFLSLYA"
     gene            4072..4860
                     /locus_tag="JN125_001554"
     CDS             4072..4860
                     /locus_tag="JN125_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000022208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HAY8871377.1"
                     /translation="MSIIEVTGNPRHDQLVHLIAERGYMNIEELAQLLDVSTQTVRRD
                     IRKLSEQGLITRHHGGAGRVSSVMNTAFEQRELSLTAEKRAIAEAVADYLPERCTVFI
                     TIGTTVEAVARALLNRRDLRIITNSLRVAQILYKNQDIEVMVPGGTLRAHNGGIIGPG
                     AVDFIEGFRADYLITSIGAIEHDGTLLEFDVNEALVARTMIKHARNTLLVADHTKFAA
                     SAAVSIGNARNVRAFFTDAPPPNSFCQLLSEENVELVVAEQEVS"
     gene            complement(4966..6789)
                     /gene="typA"
                     /locus_tag="JN125_001555"
     CDS             complement(4966..6789)
                     /gene="typA"
                     /locus_tag="JN125_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000570679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-dependent GTPase TypA"
                     /protein_id="HAY8871378.1"
                     /translation="MIEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMD
                     SNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAF
                     DGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF
                     PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYV
                     GVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAI
                     TGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDR
                     LNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREI
                     DGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIG
                     FRSEFMTMTSGTGLLYSTFSHYDDVRPGEVGQRQNGVLISNGQGKAVAFALFGLQDRG
                     KLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVLVPPIRMTLE
                     QALEFIDDDELVEVTPTSIRIRKRHLTENDRRRANRAPKDY"
     gene            7162..8571
                     /gene="glnA"
                     /locus_tag="JN125_001556"
     CDS             7162..8571
                     /gene="glnA"
                     /locus_tag="JN125_001556"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--ammonia ligase"
                     /protein_id="HAY8871379.1"
                     /translation="MSAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFF
                     EEGKMFDGSSIGGWKGINESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYD
                     RDPRSIAKRAEDYLRSTGIADTVLFGPEPEFFLFDDIRFGSSISGSHVAIDDIEGAWN
                     SSTQYEGGNKGHRPAVKGGYFPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAG
                     QNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLS
                     KNGVNLFAGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLA
                     YSARNRSASIRIPVVSSPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEA
                     MDKNLYDLPPEEAKEIPQVAGSLEEALNELDLDREFLKAGGVFTDEAIDAYIALRREE
                     DDRVRMTPHPVEFELYYSV"
     gene            8745..9794
                     /gene="glnL"
                     /locus_tag="JN125_001557"
     CDS             8745..9794
                     /gene="glnL"
                     /locus_tag="JN125_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulation protein NR(II)"
                     /protein_id="HAY8871380.1"
                     /translation="MATGTQPDAGQILNSLINSILLIDDNLEIHYANPAAQQLLAQSS
                     RKLFGTPLPELLSYFSLNIELMQESLEAGQGFTDNEVTLVIDGRSHILSVTAQRMPDG
                     MILLEMAPMDNQRRLSQEQLQHAQQVAARDLVRGLAHEIKNPLGCLRGAAQLLSKALP
                     DPSLLEYTKVIIEQADRLRNLVDRLLGPQLPGTRVTESIHKVAERVVTLVSMELPDNV
                     RLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGER
                     YRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTS
                     WPGHTEFSVYLPIRK"
     gene            9806..11215
                     /gene="glnG"
                     /locus_tag="JN125_001558"
     CDS             9806..11215
                     /gene="glnG"
                     /locus_tag="JN125_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen regulation protein NR(I)"
                     /protein_id="HAY8871381.1"
                     /translation="MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALA
                     SKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYL
                     PKPFDIDEAVALVERAISHYQEQQQPRNIQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
                     SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFT
                     GANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRI
                     IAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELG
                     VEAKLLHPETETALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAE
                     STSQMQPDSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAAR
                     LLGWGRNTLTRKLKELGME"
     gene            11326..11436
                     /gene="yshB"
                     /locus_tag="JN125_001559"
     CDS             11326..11436
                     /gene="yshB"
                     /locus_tag="JN125_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YshB family small membrane protein"
                     /protein_id="HAY8871382.1"
                     /translation="MLESIINLVSSGAVDSHTPQTAVAAVLCAAMIGLFS"
     gene            complement(11626..12999)
                     /gene="hemN"
                     /locus_tag="JN125_001560"
     CDS             complement(11626..12999)
                     /gene="hemN"
                     /locus_tag="JN125_001560"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HAY8871383.1"
                     /translation="MSVQQIDWDLALIQKYNYSGPRYTSYPTALEFSEDFGEQAFLQA
                     VARYPERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAG
                     RHVSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDPREIELDVLDHLR
                     AEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQT
                     PESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAF
                     LTQSGYQFIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGD
                     CYAQNQKELKQYYQQVDEQGNALWRGIALTRDDCIRRDVIKSLICNFRLDYAPIEKQW
                     DLHFADYFAEDLKLLAPLAKDGLVDVDEKGIQVTAKGRLLIRNICMCFDTYLRQKARM
                     QQFSRVI"
     gene            complement(13188..13697)
                     /gene="yihI"
                     /locus_tag="JN125_001561"
     CDS             complement(13188..13697)
                     /gene="yihI"
                     /locus_tag="JN125_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Der GTPase-activating protein YihI"
                     /protein_id="HAY8871384.1"
                     /translation="MKPSSSNSRSKGHAKARRKTREELDQEARDRKRQKKRRGHAPGS
                     RAAGGNTTSGSKGQNAPKDPRIGSKTPIPLGVTEKVTKQHKPKSEKPMLSPQAELELL
                     ETDERLDALLERLEAGETLSAEEQSWVDAKLDRIDELMQKLGLSYDDDEEEEEDEKQE
                     DMMRLLRGN"
     gene            14279..14911
                     /locus_tag="JN125_001562"
     CDS             14279..14911
                     /locus_tag="JN125_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418301.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HAY8871385.1"
                     /translation="MTNLNYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALN
                     TLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEY
                     LEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKAQLN
                     MVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQPVEETQDGE"
     gene            complement(15293..18079)
                     /gene="polA"
                     /locus_tag="JN125_001563"
     CDS             complement(15293..18079)
                     /gene="polA"
                     /locus_tag="JN125_001563"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HAY8871386.1"
                     /translation="MVQIPQNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLN
                     MLRSLIMQYKPTHAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAM
                     GLPLLAVSGVEADDVIGTLAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTIL
                     GPEEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEP
                     EKIAGLSFRGAKTMAAKLEQNKEVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELL
                     GLFKKYEFKRWTADVEAGKWLQAKGAKPAAKPQETSVADEAPEVTATVISYDNYVTIL
                     DEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDA
                     PDQISRERALELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILN
                     SVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL
                     HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL
                     EKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLP
                     KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVR
                     NEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAE
                     VFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGV
                     LEYMERTRAQAKEQGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADII
                     KRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTRLDVPL
                     LVEVGSGENWDQAH"
     gene            18081..18323
                     /locus_tag="JN125_001564"
     CDS             18081..18323
                     /locus_tag="JN125_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871387.1"
                     /translation="MSVPVYQIMGKGCHRQDKNMSFSPLFVKIFCRSSGSLANRHVDN
                     FVHKLFTSLLIYYHAFYSMMFVFVFHVVKNKAIPNN"
     gene            18443..19375
                     /locus_tag="JN125_001565"
     CDS             18443..19375
                     /locus_tag="JN125_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HAY8871388.1"
                     /translation="MANLLNKFIMTRILAAITLLLSIVLTILVTIFCSVPIIIAGIVK
                     LLLPVPVIWRKVSRFCDFMMYCWCEGLAVLLHLNPLLQWEVHGLEGLSKKNWYLLICN
                     HRSWADIVVLCVLFRKHIPMNKYFLKQQLAWVPFLGLACWALDMPFMKRYSRAYLLRH
                     PERRGKDVETTRRSCEKFRLHPTTIVNFVEGSRFTQEKHQQTHSTFQNLLPPKAAGIA
                     MALNVLGKQFDKLLNVTLCYPDNNRQPFFDMLSGKLTRIVVHVDLQPIADELHGDYIN
                     DKSFKRHFQQWLNSLWQEKDRLLTSLMSSQRQDK"
     gene            complement(19416..20846)
                     /locus_tag="JN125_001566"
     CDS             complement(19416..20846)
                     /locus_tag="JN125_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312811.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdgA family protein"
                     /protein_id="HAY8871389.1"
                     /translation="MIRKSATGVIVALAVIWGGGTWYTGTQIQPGVEKFIKDFNDAKK
                     KGEHAYDMTLSYKNFDKGFFNSHFQMQISFDNGAPDLNIKPGQKVAFDVDVEHGPLPI
                     TMLMHGNVIPALAAAKVNLVNNELTQPLFIAAKNKSPVEATLRFAFGGSFSTTLDVAP
                     AEYGKFSFGEGQFTFNGDGSSLSNLDIEGKVEDIVLQLSPMNKVTAKSFTIDSLTRLE
                     EKKFPVGESESKFNQVNIINQGEDVAQIDAFVAKTRLDRVKDKDYINVNLTYELDKLT
                     KGNQQLGSGEWSLIAESIDPSAVRQFIIQYNIAMQKQLAAHPELANDEVALQEVNAAL
                     FKEYLPLLQQSEPTIKQPVRWKNALGELNANLDISIADPAKSSSSTNKDIKSLNFDVK
                     LPLNVVTETAKQLNLSEGMDAEKAQKRADKQISGMMTLGQMFQLITIDNNTAPLQLRY
                     TPGKVVFNGQEMSEEEFMSRAGRFVH"
     gene            complement(21001..21627)
                     /gene="dsbA"
                     /locus_tag="JN125_001567"
     CDS             complement(21001..21627)
                     /gene="dsbA"
                     /locus_tag="JN125_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA"
                     /protein_id="HAY8871390.1"
                     /translation="MKKIWLALAGLVLAFSASAAQYEDGKQYTTLEKPVAGAPQVLEF
                     FSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGKDLTQAWAVAMALG
                     VEDKVTVPLFEGVQKTQTIRSASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKA
                     AADVQLRGVPAMFVNGKYQLNPQGMDTSNMDVFVQQYADTVKYLSEKK"
     gene            complement(21644..22630)
                     /gene="srkA"
                     /locus_tag="JN125_001568"
     CDS             complement(21644..22630)
                     /gene="srkA"
                     /locus_tag="JN125_001568"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response kinase SrkA"
                     /protein_id="HAY8871391.1"
                     /translation="MNNSAFTFQTLHPDTIMDALFEQGIRVDSGLTPLNSYENRVYQF
                     QDEDRRRIVVKFYRPERWTADQILGEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFY
                     FAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLF
                     EDATLIPSGLKAAFLKATDELIAAVTAHWREDSTVLRLHGDCHAGNILWRDGPMFVDL
                     DDARNGPAIQDLWMLLNGDKAEQRMQLETIIEAYEEFSEFDTAEIGLIEPLRAMRLVY
                     YLAWLMRRWADPAFPKNFPWLTGEDYWLRQTATFIEQAKVLQEPPLQLTPMY"
     gene            complement(22707..22976)
                     /locus_tag="JN125_001569"
     CDS             complement(22707..22976)
                     /locus_tag="JN125_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihD family protein"
                     /protein_id="HAY8871392.1"
                     /translation="MKCKRLNEVIEFLQPAWQKEPDLNLLQFLQKLAKESGFDGELAD
                     LTDDILIYHLKMRDSAKDAVIPGLQKDYEEDFKTALLRARGVIKE"
     gene            23046..23630
                     /gene="mobA"
                     /locus_tag="JN125_001570"
     CDS             23046..23630
                     /gene="mobA"
                     /locus_tag="JN125_001570"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase MobA"
                     /protein_id="HAY8871393.1"
                     /translation="MNLMTTITGVVLAGGKARRMGGVDKGLLELNGKPLWQHVADALM
                     TQLSHVVVNANRHQEIYQASGLKVIEDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDT
                     PYIPPDLAARLNHQRKDAPVVWVHDGERDHPTIALVNRAIEPLLLEYLQAGERRVMAF
                     MRLAGGHAVDFSDHKDAFVNVNTPEELARWQEKR"
     gene            23612..24139
                     /gene="mobB"
                     /locus_tag="JN125_001571"
     CDS             23612..24139
                     /gene="mobB"
                     /locus_tag="JN125_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418293.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HAY8871394.1"
                     /translation="MAGKTMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT
                     HHDMDVDKPGKDSYELRKAGAAQTIVASQQRWALMTETPDEEELDLQFLASRMDTSKL
                     DLILVEGFKHEEIAKIVLFRDGAGHRPEELVIDRHVIAVASDVPLNLDVALLDINDVE
                     GLADFVVEWMQKQNG"
BASE COUNT         5907 a         6158 c         5904 g         6227 t
ORIGIN      
        1 atcaattacg tcctgtggcc gactaattga ataagttgca ggactggtga tttgactcat
       61 cgcagtgtcc tttttaattg ttgtagggtg gcgctgacgt gacgcagcgc cagacagaga
      121 tttagaaaat cattccggcg caaattgcag catgaccttt atggagtcat tttgctgcgc
      181 gcgttcaaat gccgccgctg catcctcaat ggcaaataaa tcggtaacca gttcactggt
      241 atcaaaccgc ccatccgcca gccattcgat aacagcatcg aaatcttcag ggatgtacat
      301 gccagagttg agcaagtcac gctcgaaacg ttgcatcatc ggtaatggta tttcacgcgg
      361 cccacttggt acgcccatgc acacgacggt gcctccggca tatacacggg tacatgcatc
      421 gttaagcgtg gcctgcgctg caacgacatc aatcgccccc gtaaatcgca catctgcggc
      481 cagctcacct agtgcccaaa cttctgctgc gcccagcttt aacgccagcg cgcgtttggc
      541 agcgtcaggt tcaatcacgg taatcttacc tgcccccata atgcgcagtg cctgcacgat
      601 ggataagcct atcgttccgg caccaattac cagtacgctt tccagagaag ctttcggcat
      661 tcggttaacg cagtgacggg cacaagccgc cggttcggca aaggccaaca cttttagcgg
      721 taaagaggct ggtgcgacat ggcaattacg cgcaggaaca atgtgttgtg agcgagcaaa
      781 gcccggtgcg cgaaaactag caacctgcgg tggttcacaa agattaaaac gtcctgcttt
      841 gcaggctcgg cattccatgc aagccatgat gggatcgacc acaacatgat cgcccggctg
      901 tacattttta acgtcgctgc caacttccgt aacgcgcgct gcaatttcat gaccggggac
      961 gacaggtggt ttggcaaacg gatgaccgcc tttcagaaca tgcagatccg aaccgcatat
     1021 cccatagaac acaggcgcaa tccgcacttc gtgcggttta agttcctggt gtggtacttc
     1081 aacatattga gtggtgactt tcccaatatc tgaaaataaa acctgggtaa ttttatccat
     1141 tgttattctc cagaatcgat atccataggg gattagcgtt gcgcgatacc ttcatcgaca
     1201 atttctgcca accgttgtaa acgaggaaca gagacatcgc gcagcatagt ttgtggatct
     1261 tgtgcaccaa caaccgacgc ccaaaccgct cgtccagcca ggaagcccga cgcaccacct
     1321 ttcatggcaa tacttactgc acggccaaaa atatcggcat caacgccaga agaaagaatt
     1381 acccacggca tcttcatctg atcgttaagt tgctgacagg cggcaagtaa ggttttttca
     1441 tcgcctttgc cccctaatgg catctcggct ttgtaaagat cagcctctgt tccaccaagc
     1501 tctgcggcgg cggcaacaat ggcgctttca cgatcaaagt cccaaccgcg acgaggtgga
     1561 cgcaccacag gttcaataat gctcaccagc ccggcactac ggcagcgacg aacaaattta
     1621 tcaaccattg ccagacgttc ctctgcgggt tcatcttcac gccagagtac aagtaatttc
     1681 attgccttag cccccatttc acgggcttta tgcgggtcga cggacatatc tatttcaacg
     1741 ctatcaaccg ggatgccatt acctgggata aaaagatcgg cagcgacaat caggccgcaa
     1801 gaattagcaa cagcgccctg ctcgactatt tgctcaagac aaaattgttt atccgccaga
     1861 acggcagaag cataaggaga aaggattcgg gtcgcggcaa ctttaaaatc ggtgagtaca
     1921 ctgtcggcga tgggttttgg ctgccctgct gccgcaaaca tcaagcgcat ggcctcacgc
     1981 tgatcgacag ctaacatggc aaatccacca cctgggcggg agatatcttt cagcgtaaat
     2041 ggggtgaagt gggatgacat agaaactcct gttaatagat aaaattaaag accagcctgc
     2101 tggcgaacct gatttagcag ggcactccag tcctgccgcc ctttgccgtc ttgacttgct
     2161 gcagcgtaat aactttctgc tgcaatcccc atattgagcg gtgcccccgt ctcccgagcg
     2221 acgtcaactg caatacgcag atctttcaac gccagatcca ccatgaaggc gggtgaaaga
     2281 tcgcctttca gcactttgcc aggccaggtg gtcgtaaaat gtcctttccc tgctgccgta
     2341 ccactcatca ccttaattgc gacatcaaga tttaatccca gtgactcaca taacacagcg
     2401 gcctcggagg acagcgcatt aagcgcaatg ctcatatagt tgttaattag cttcacgcgg
     2461 atccccattc ctgggccgcc cagcctcgac cagctcatta cccatgcaca taagaatcgg
     2521 gcgtgcacgt gcaatctgct catcagtgcc acccgctaaa atcagcaatg tgccatcaat
     2581 cgcattcacg gacgttctgc ccacgggagc gtccatcata ctgatgcctt tttcttgtaa
     2641 ctcccgtatt aatgcatcgg tctgtaaggg atgaatagtc gacatatcaa tcaataacgc
     2701 gtcagatgaa acagcctcac agacgccttt ttccccaaca gaacctgtcg aacaatgtca
     2761 ccattgggaa gcatagtgat gataaattca gcgcctgctg ctgcttccgc tggggtttgt
     2821 gccgcagtgg ccccctgcgt aactagcgca tcgacggcct gtgcattgac atcaaatacc
     2881 tgcaatgaat gccctttttg caatagattg ttagccattg ggctacccat ctgccccagc
     2941 ccgagaaatg caatggttgc catgaatact ctcctgtctg acattgacaa aataatgaca
     3001 attgaaaatt cgttttcgtc tttttttgag catatttgta atttatgttc aaaaacacga
     3061 cacgcatcac taatttgatc atttgcgtca tttaaattga ccaaagacga caaaattaaa
     3121 caggacaaga caaatatgac cagaattgca tgcgtgggta tcacagttca ggacagaatt
     3181 tattctttgc ccactctgcc ggagggcggc gggaaatatc aggcaaatca ttatcttgag
     3241 attggtggcg gcccggcagc aacagccgct gttgcaatcg caaagcttgg cgtggaggtt
     3301 gatttcatcg gtcgcgtcgg cgatgacagt tgtggaaata ccttacttgc agaacttgag
     3361 ggttggggcg tcaataccgc attttgccgc cgatatccta acgcccgttc gtcgcaatca
     3421 gcgatcctcg ttgatcagca tggcgaacgg attatcgtta attatccaag tcctgatctc
     3481 ggtactgatg ccgaatggtt agaagcgatc gatttctctc gttatgatct gattctggcc
     3541 gatgttcgct ggcatagcgg tactgaaaaa gcattctcgc tagcgtgcct tgcgggtgtg
     3601 acaacgcttt tagacgccga tatgacaccg caggatattt ctccacttgt cgcgcttgcc
     3661 gatcacgccg tgttctcaac accagggctg aaacgcatga ctggcctgca gtcacctgaa
     3721 gaaggtttgt tccaggcaac gacacaaaca gcaggtaaag tgtatgttac gctgggttct
     3781 gaaggatcgt tgtggattga agatggtcat ttgtgtcaac aggaggcatt ttctgtcaat
     3841 gtggttgata ccactggagc aggcgatgtt tttcacggcg cactcgcggt agcgttggca
     3901 gaaaaaatgc caacaaaaga ggctattcgt tttgccagtg cggttgccgc gatgaaatgt
     3961 acccagcctg gcggtcgggc cggcattcct aatcgtgagc aaaccgaatc atttttgtca
     4021 ctttatgcgt aaaatggtaa acatctaccg aggaggggca agggagtatt catgagtatc
     4081 atcgaagtga caggtaatcc acgccatgac caactcgttc atctaatcgc agaacgcggt
     4141 tatatgaata ttgaagaact ggcacaactg ctggatgttt caacgcaaac cgtgcgccgg
     4201 gatatccgaa aactcagtga gcagggcttg atcacccgtc atcatggagg ggccgggcgc
     4261 gtctccagcg tcatgaatac cgcttttgag caacgggaac tttcgctcac cgccgagaaa
     4321 cgggcgatcg ctgaggcagt cgccgattac cttcccgaac gctgtaccgt ctttatcacc
     4381 atcggtacaa ccgtagaagc cgttgccagg gcattactca accggcgtga tttacgcatt
     4441 atcactaaca gcctacgtgt ggcacagatt ctttataaga atcaggatat tgaagtgatg
     4501 gtgccgggag gcactttacg cgctcataac ggcgggatta tcggcccagg agccgtggat
     4561 tttattgaag gcttccgcgc agattattta atcaccagta taggtgccat tgaacatgac
     4621 ggcaccctac tggaatttga tgtaaatgaa gcgttagtcg cgagaacgat gattaaacat
     4681 gcgcggaata cattgttagt ggccgatcat acgaagtttg ccgcgtctgc tgccgtttca
     4741 attggcaatg cacggaatgt cagggctttt tttactgatg ccccgcctcc caattctttc
     4801 tgccagttgt taagtgaaga gaatgttgaa ctggtggttg ccgagcaaga agtatcctga
     4861 aattgaaatt tcggaaaatc cgctgggaat ttcagcggat tttgttttcc ataagcaaaa
     4921 aaaacctgcc agcgatggca ggttttttat aactaaaaaa cgaaattaat agtctttcgg
     4981 tgcgcggttg gcgcgacgac gatcgttttc cgtcaggtga cgtttacgaa tacggataga
     5041 ggtcggagtc acttctacca gttcgtcatc atcgatgaac tccagagctt gttccagagt
     5101 catgcggata ggcggaacca gaacaacggc ttcgtcagta ccggaagcac gcatgttggt
     5161 cagtttctta ccggtcaggc agtttacagt caggtcgtta gagcggctat gaataccgat
     5221 aatctgacct tcgtaaactt ctgcaccgtg accgaggaac agcttaccgc gatcctgcag
     5281 accgaacagc gcgaacgcga ccgctttacc ctgaccgtta gagatcagta cgccgttctg
     5341 acgctgaccc acttcacccg gacgtacgtc gtcgtagtgg ctgaaggtgg agtacagcag
     5401 accagtaccg gaagtcatgg tcatgaactc agaacggaag ccaatcagac cacggcttgg
     5461 gatcacgtag tcgagacgta cgcggccttt accgtctgga ttcatgtttt tcaggtcgcc
     5521 tttacgttcg cccagcgcct gcattacaga accctgatgc tgttcttcaa cgtccagagt
     5581 cacgttttca tatggctctt gtttacgacc gtcgatttca cggaagataa ctttcggacg
     5641 ggataccgcc agttcgaaac cttcacgacg catgttttcg atcagaacag acaggtgtag
     5701 ttcgccacga ccagaaacgc ggaacgcatc agcgtcttcg gtttcttcta cgcgcagcgc
     5761 aacgttgtgt accagttctt tgttcagacg atccaggatc tgacgagacg ttacgaactt
     5821 accttcttta ccgcagaacg gcgaggtgtt aacgcagaag aacatagaaa cggtcggctc
     5881 atcaacggag agtgccggca gcgcttcaac gttttgcgtg tcgcaaacgg tgtcagaaat
     5941 gttcagttcg ccaaggcccg tgatcgcaac gatatcgcca gcttccgcca ggtcggtttc
     6001 gatacgttcc agaccgaggt ggcccagcac tttaccgact ttcgcgttgc gggttttgcc
     6061 ttcgctatcg atgatagtga cctgctggtt cggcttcact ttaccgcgct tgatgcggcc
     6121 aatgccgata acgccaacat agctgttgta atcgagctga gaaatctgca tctggaacgg
     6181 accgtcaagg tcaacgtccg gcgcaggaac gtggtcaaca atcgcctggt acagcggggt
     6241 catgtcttcc gccatatctt cgtggtccag acccgcgata ccgttcagcg cagaagcgta
     6301 aacgatcggg aagtccagct gctcgtcggt cgcgtcgagg ttaacgaaca gatcgaatac
     6361 ctgatccaca acccaatcag gacgcgcgcc agggcggtca actttgttga taacaacaat
     6421 cggcttcagg ccgtaagcaa acgctttttt ggttacgaag cgcgtttgcg gcatcgggcc
     6481 gtcaaatgcg tcaaccacca gcagcactga gtctaccatg gacattacac gttcaacttc
     6541 accaccgaag tcggcgtgcc ccggggtatc aacgatgttg atacggtaat cattccattt
     6601 gatagcggtg tttttcgcga ggatggtaat cccacgctct ttctccaaat cgttggagtc
     6661 catcacgcgc tcttgggttt cggcacgaga gtcgaacgta ccggattgtt ggagcagctt
     6721 gtctaccagg gtggttttac catggtctac gtgcgcgatg atggcgatat tacgcaattt
     6781 ttcgatcaca actttgcctc aggcattaga aatagcgcgt tattgtacac ggattaatcg
     6841 cactacaaaa caggatcaca aacatcctcc gcaaacaagt attgcagagt ccctttgtga
     6901 tcgctttcac ggagcataaa aagggttatc caaaggtcat tgcaccaaca tggtgcttaa
     6961 tgtttccatt gaagcactat attggtgcaa cattcacatc gtggtgcagc ccttttgcac
     7021 gatggtgcgc atgataacgc cttttagggg caatttaaaa gttggcacag atttcgcttt
     7081 atctttttta cggcgacacg gccaaaataa ttgcagattt cgttaccacg acgaccatga
     7141 ccaatccagg agagttaaag tatgtccgct gaacacgtac tgacgatgct gaacgagcac
     7201 gaagtgaagt ttgttgattt gcgcttcacc gatactaaag gtaaagaaca gcacgtcact
     7261 atccctgctc atcaggtgaa tgctgaattc ttcgaagaag gcaaaatgtt tgacggctcc
     7321 tcgattggcg gctggaaagg cattaacgag tccgacatgg tgctgatgcc agacgcatcc
     7381 accgcagtga ttgacccgtt cttcgccgac tccaccctga ttatccgttg cgacatcctt
     7441 gaacctggca ccctgcaagg ctatgaccgt gacccgcgct ccattgcgaa gcgcgccgaa
     7501 gattacctgc gttccactgg cattgccgac accgtactgt tcgggccaga acctgaattc
     7561 ttcctgttcg atgacatccg tttcggatca tctatctccg gttcccacgt tgctatcgac
     7621 gatatcgaag gcgcatggaa ctcctccacc caatacgaag gtggtaacaa aggtcaccgt
     7681 ccggcagtga aaggcggtta cttcccggtt ccaccggtag actcggctca ggatattcgt
     7741 tctgaaatgt gtctggtgat ggaacagatg ggtctggtgg ttgaagccca tcaccacgaa
     7801 gtagcgactg ctggtcagaa cgaagtggct acccgcttca ataccatgac caaaaaagct
     7861 gacgaaattc agatctacaa atatgttgtg cacaacgtag cgcaccgctt cggtaaaacc
     7921 gcgaccttta tgccaaaacc gatgttcggt gataacggct ccggtatgca ctgccacatg
     7981 tctctgtcta aaaacggcgt taacctgttc gcaggcgaca aatacgcagg tctgtctgag
     8041 caggcgctgt actacattgg cggcgtaatc aaacacgcta aagcgattaa cgccctggca
     8101 aacccgacca ccaactctta taagcgtctg gtcccgggct atgaagcacc ggtaatgctg
     8161 gcttactctg cgcgtaaccg ttctgcgtct atccgtattc cggtggtttc ttctccgaaa
     8221 gcacgtcgta tcgaagtacg tttcccggat ccggcagcta acccgtacct gtgctttgct
     8281 gccctgctga tggccggtct tgatggtatc aagaacaaga tccatccggg tgaagccatg
     8341 gacaaaaacc tgtatgacct gccgccagaa gaagcgaaag agatcccaca ggttgcaggc
     8401 tctctggaag aagcactgaa cgaactggat ctggaccgcg agttcctgaa agccggtggc
     8461 gtgttcactg acgaagcaat tgatgcgtac atcgctctgc gtcgcgaaga agatgaccgc
     8521 gtgcgtatga ctccgcatcc ggtagagttt gagctgtact acagcgtcta atagttgaag
     8581 ttgtactacc cggcgcaaca acgccgggat ttagttgccg tggaaacttt cagcccatct
     8641 ctgcatgggc ttttttctcc gtcaattctc tgatgcttcg cgctttttat ccgtaaaaag
     8701 ctataatgca ctaaaatggt gcaacctgtt caggagactg ctttatggca acaggcacgc
     8761 agcccgatgc tgggcagatc ctcaactcgc tgattaacag tattttgtta atcgatgaca
     8821 acctggagat ccattacgcc aaccctgccg cgcaacaact gctcgcccaa agctcccgca
     8881 aattgtttgg tacaccgtta ccggaactgt tgagctactt ctcattaaat atcgagctga
     8941 tgcaagaaag tctggaggcg gggcaaggtt ttaccgataa cgaagtgacg ctggtcatcg
     9001 acgggcgctc gcatatcctt tctgtgacgg cccagcgtat gccggacggc atgatcctgc
     9061 tggagatggc tccgatggat aaccagcgcc gcttaagtca ggaacagcta cagcacgccc
     9121 agcaggttgc tgcccgtgat ttagtgcgcg gcctggcaca tgagattaaa aatccgcttg
     9181 gctgtttacg tggcgcggcg cagctgctca gcaaagcgtt acctgaccca tcactactcg
     9241 aatataccaa agtgattatc gaacaggcgg accggctgcg aaatctggtc gaccgtctgt
     9301 tggggccgca gctgcccggt acgcgcgtta ccgaaagtat tcacaaagtg gctgaacgcg
     9361 tggtaacgct ggtgtcgatg gaactgccgg acaacgtgcg gttgattcgt gattacgatc
     9421 ccagcctgcc ggaactggcg cacgacccgg atcaaattga acaggtcttg ctgaatattg
     9481 tgcgcaatgc gctacaggcg ctggggccgg aaggcggtga aatcattctg cgtacccgca
     9541 ccgcgtttca actgacctta cacggcgagc gctaccggct ggcggcgcgg attgatgtgg
     9601 aagataacgg gccgggcatt ccgcctcatt tgcaggatac gctgttttac ccgatggtca
     9661 gcggccgcga aggtggcacc gggcttggct tatccatcgc ccgtaatttg attgatcagc
     9721 attcaggcaa aattgaattt accagttggc caggtcatac cgagttctcg gtttacctgc
     9781 ctatcaggaa ataaaggtga cgtttatgca acgagggata gtctgggtag tcgatgacga
     9841 tagttccatc cgttgggtgc ttgaacgtgc gctcgctgga gcgggtttaa cctgtacgac
     9901 atttgagaac ggcgcggaag tactggaggc gctggcgagc aaaacgccgg atgtgctgct
     9961 ttcagatatc cgtatgccgg gaatggacgg gctggcgctg ctcaagcaga ttaaacagcg
    10021 ccatccaatg cttccggtca tcattatgac cgcacattcc gatctggatg ctgccgtcag
    10081 cgcctatcaa caaggggcgt ttgattatct gcccaaaccg tttgatatcg acgaagccgt
    10141 ggcgctggtt gagcgcgcta tcagtcatta ccaggaacag cagcagccgc gtaatattca
    10201 gcttaacggc ccaacgaccg atatcatcgg cgaagcgcca gccatgcagg acgtgttccg
    10261 tattatcggt cggctttcgc gttcttctat tagcgtgctg attaacggcg aatccggcac
    10321 cggtaaagaa ctggtcgctc atgccctgca tcgccacagt ccgcgcgcca aagcgccgtt
    10381 tatcgcgctg aatatggcag ctatcccaaa agatttgatc gaatcagaac tgtttggcca
    10441 cgagaaaggc gcgtttactg gcgcgaatac cattcgtcag gggcgttttg aacaggccga
    10501 tggcggtaca ttattcctcg acgaaattgg tgatatgccg ctggatgtgc agacgcgttt
    10561 gctgcgcgtg ctggcagacg gtcagtttta ccgcgttggc ggctatgcgc cggtgaaagt
    10621 ggatgtgcgg attatcgctg ccactcacca gaatctcgaa cagcgagtgc aggaaggtaa
    10681 gttccgtgag gatctgttcc accgcctaaa cgttatccgc gttcatctgc cgccgctgcg
    10741 cgaacgtcgg gaagatattc cccgtctggc gcgccatttt ttacaggttg ccgcgcgcga
    10801 actgggcgta gaagcgaagt tactgcatcc ggaaaccgaa actgctctga cgcgtctggc
    10861 gtggccaggc aacgtgcgcc agctggaaaa cacctgccgc tggctaacgg tgatggccgc
    10921 cgggcaggaa gtgttgattc aggatttgcc cggcgaactg tttgaatcaa cggttgcgga
    10981 gagtacttcg caaatgcaac cggacagctg ggcgacgctt cttgcgcagt gggcagacag
    11041 agcgctgcgt tccggtcatc aaaatctgct ttccgaagcg cagccagagc tggagcggac
    11101 gttactgacg accgcgttgc gacatacgca ggggcataaa caggaagcgg cgcggctact
    11161 cggctggggc cgcaacaccc tgacgcgtaa gttaaaagag ctggggatgg agtgattcac
    11221 agcttgtgtg taaagattga ttattgagcg caaattgctg gtattttacg ctttactgtt
    11281 ccgataagtt cagtatgatc tgcccggaaa acggggagag tcattatgct ggaatcaata
    11341 attaatctgg tatcgagtgg cgcagttgac agccacacac cgcaaactgc cgttgctgcc
    11401 gtgctgtgtg ccgcaatgat tgggctgttt agttgagttt cagattgctg atgaagtgct
    11461 ctttgttcat gccggatgcg gcgtgaacgc cttatccggc ctacaaaagc aatattttca
    11521 acaggttttg taggcctgat aagcgtagcg catcaggcaa tcttgttctc agcacattga
    11581 tggcgctttc gttttctact ttgtaaacga agcgccattc actattcaaa tcacccgtga
    11641 gaactgctgc atccgcgctt tctggcgcag ataggtatca aagcacatgc aaatgttgcg
    11701 gatcagcaag cgacctttcg ccgtcacctg tattcccttc tcatccacat ccaccagccc
    11761 atcttttgct aacggggcga gcagcttgag atcttccgca aagtaatcag cgaagtgcaa
    11821 atcccactgt ttctcaatag gggcgtaatc cagacggaag ttgcagatga gcgacttaat
    11881 cacatcgcgg cgaatacagt catcacgcgt tagcgcaata ccacgccaca gcgcattgcc
    11941 ttgttcatcc acttgctgat agtactgctt caactctttc tggttctgcg cgtagcagtc
    12001 gccaatcatg ctgatggcgg aaacgcccat ccccagcaga tcggtatcgc cctgagtggt
    12061 gtagccctgg aagttacgat gcagcacgcc ttcacgctgg gccaccgcca gctcgtcatc
    12121 cggacgggca aagtgatcca taccgataaa ctgatagccc gattgcgtca ggaaggcgat
    12181 ggtttcctgc aggatatcga gtttttgctg cggactcggc aggtcagcat ctttgatttt
    12241 gcgctgagca gcaaaaatgg tcggcagatg cgcgtagtta aagacactca gacgatcggg
    12301 gttcagctcc gccacacgtt tcagggtaaa ggcgaaactc tccggcgtct gtttcggcag
    12361 gccgtaaatc aggtcgatgt tggtggaggt aaaaccaatc tcacgcgcat ggttaagcag
    12421 tgcaaagatg aactcttcat cctgctcgcg gttaaccaga cgttgcactt ctttgttgaa
    12481 gtcctgcacg cccatgctca ggcgattaaa gccttcggcg cgtaaatgat cgagtacatc
    12541 cagttcgatt tcccgcggat cgacttcgat cgaaatctcc gcatcggcat tgaactggaa
    12601 gttttcgcgc agcagcttca tcaggcggct gatttgcgct ttattcagat acgtcggcgt
    12661 tccgccgccc cagtgcaatt ggctgacgtg acgcccggcg aacagcggtg cacgatggac
    12721 gatttcttgc tccagcgcgt ccagatactg atcggccttg tgctgctggc gagtaacaat
    12781 cttattacaa ccgcagaagt aacaaagctt atggcagaac gggatatgta cgtagagaga
    12841 taatggacgc tcaggatagc gcgccacggc ttgtaaaaac gcctgttcgc caaagtcttc
    12901 tgaaaactcc agcgcggtcg ggtacgaggt gtatcgtggc ccggaatagt tatatttctg
    12961 gatcagggcc agatcccagt cgatttgctg tacagacatg ctcactcctt ccgatggcgt
    13021 ctctggcggc tacggcgtac cggcggatgc ccgtttcggg tcatcagccg gttgcgcagc
    13081 cacttttgtc gccgcgacaa ccgctgtagt ttaacgaata accacaccag ataacatata
    13141 accggaaggg ttatcagcag aacgggaagg cccacggcgg caatccgtta gttgccccgc
    13201 agcagacgca tcatgtcttc ttgcttctcg tcttcttcct cttcttcgtc atcgtcataa
    13261 gagaggccga gtttctgcat caactcatca atacgatcca gtttagcatc cacccaggat
    13321 tgctcttcgg cactcagggt ttcgcctgct tccagacgtt ccagcagcgc atccagacgc
    13381 tcatccgttt ccagtaattc caactccgcc tgcggtgaaa gcataggttt ctcactcttc
    13441 ggtttgtgct gtttggtgac tttttcagtc acgcccaatg gaataggggt tttactgcca
    13501 atacgtggat cttttggtgc gttctggcct ttgctgcctg acgtggtgtt tccgcccgct
    13561 gcgcggctgc ccggcgcatg accacgacgt tttttctgac gcttgcgatc acgagcttcc
    13621 tgatccagct cctcgcgtgt ttttcgacgc gcttttgcat gacctttgct gcgtgagttt
    13681 gaagatgatg gtttcataat ggttcgtctt ttagccgttt tattcagtat cgatttgcgg
    13741 cggaatctaa cagaaagcaa gcaaagaaaa aaggcgacag attactctgt cgcctttttt
    13801 cctgactcat aacccttaac gggtcttaca atccttgcag gccgccaaca caccctgttt
    13861 ttcctttagc cggaacaatc cgtgttgatt ccatttccgt ttaattacgt ctccggacgt
    13921 ttgtcttcct gacaatcctc tgtcttcgcc tcctggcgct cctgaccctc atcctgagtc
    13981 attgttcctg ttagcgtcct cgctctatgg gtgctacttt acgcctttgc tttaaacaaa
    14041 caatcaaccg ccatcagtat ttgcacattt tcagagtttt atataaaagc aattcactga
    14101 tttatatagc ttatttgaca tgcatcgcag aattttctct gctatttcgc ataaagacta
    14161 tcggcaatgt ctcacaaagc gtatggcttt tacttacaac gctcacgccg aaaaatccgc
    14221 cttttattat agttcaggta taatcgccac aaagctttga ctgacggaga cgaccgcttt
    14281 gactaatttg aattatcaac agacgcattt tgtgatgagt gcgcctgata ttcgccacct
    14341 accttccgat accggaattg aagtggcttt tgcaggccgt tccaacgcag gtaaatccag
    14401 cgcgctgaac acgctgacta accagaaaag cctggctcgt acctcaaaaa ccccagggcg
    14461 cacccagctt atcaacctgt ttgaagtggc tgacggcaag cgtctggttg acttgcctgg
    14521 gtacggttat gcggaagtcc cggaagagat gaagcgcaaa tggcagcgtg cgctcggcga
    14581 atacctcgaa aaacgtcaga gcctgcaagg tctggtggtg ctaatggata ttcgccatcc
    14641 gctgaaagat ttggatcagc agatgattga gtgggcggta gacagcaata tcgccgttct
    14701 ggtgctgctg accaaagcgg acaaactggc aagcggcgca cgtaaagcgc aattgaatat
    14761 ggtgcgtgaa gctgtactgg cgtttaacgg tgatgtgcag gttgaaacgt tttcttcgtt
    14821 gaagaaacaa ggcgtggaca agctgcggca gaaactggat acctggttta gcgagatgca
    14881 gcctgtagaa gaaacgcagg acggcgaata attttcttgc cttaatgctt gtgccggatg
    14941 tggcgtatcc ggcccgtaaa ttcaatagat tacaattcta ccgttggcct gataaacata
    15001 gcgcatcagg cattacggat cttttctttc gcccaataaa aaacgcccca gtcattactg
    15061 actggggcgg ctaaaatatt cagccaaatc cgattacgtg aagtaaaagg tctgaaagat
    15121 agaacatctt acctctgtac cctacgcgac taactttact cttttttgtt cagttcagaa
    15181 agcacttttt gtaatttttt ttcagttgtt gcataggaat ttctaatagc catcacaaaa
    15241 cgtgacagct tatgttgctt acttacgaaa aaagggcatg ttcaggcgaa tcttagtgcg
    15301 cctgatccca gttttcgcca ctccccactt ccaccagcaa cggcacatcc agacgggtac
    15361 agttttccat cagttgatga atctgcttcg cgacggcatc aacatcatct ttatgaactt
    15421 caaataccag ttcatcgtgt acctgcatga tcatacgtac acgcggttgc tcagcctgta
    15481 accacgcatc aacggcaatc atcgcccgtt tgataatgtc ggcggcggtt ccctgcattg
    15541 gcgcgttaat ggctgcacgt tcagccgctg cacgacgagc accattgctg gatttgatat
    15601 ccggcagata cagacggcgt ccgtccagcg tttcaacgta gccctgctct ttcgcctgag
    15661 cacgggtgcg ttccatatac tccagcacgc cagggtagcg ttcgaagtaa aggtccatgt
    15721 acttctgcgc ttctttacgt ggaatgttca attgccgcgc cagaccgaaa gcactcatgc
    15781 cataaatcag accaaagttg atcgctttcg cgctacggcg ttgctcgctg gtgacggttt
    15841 ccagtggcaa accaaacact tctgccgccg ttgcccggtg gatatctttt ccttccgcga
    15901 atgcggtcag caagcctttg tcacgcgaaa gatgcgccat aatgcgcagt tcaatctgcg
    15961 agtagtccgc tgagacaatc acataatcct ctggcgcaat aaacgcctgg cggatacgac
    16021 gaccttcttc gttacgcacc ggaatgtttt gcaggttagg atcggttgac gataaacgtc
    16081 ccgttgcagt tactgcctgg tgataagagg tatgcacacg cccggttttc gggttgatca
    16141 tcagcggcag cttgtcggtg taggtcgatt tcagcttcgc cagaccacga tactccagaa
    16201 tcacttttgg caacggatag tccagcgcca gttcttccag tacctcttcc gacgttgacg
    16261 gcgcgccacc cggcgttttc ttcagcggtt taataccctg tttttcaaac agaatggttt
    16321 gcaactgctt ggtggaagaa aggttaaatt cttcacctgc aatttcatgc gctttctttt
    16381 ccagctcagc cagacgcaag gtgagctctt cagaatgatt gtgcagcact ttcggatcga
    16441 tcttcacacc gttacgttca atgcgtgaaa gcaccggcac cagcggcatt tcgatattct
    16501 cgaagacgtt caacggccct ttgtgttttt gcaggtccgg ccacattttc agatgcaact
    16561 gcaaggtgac atcagcatct tcggcggcgt aacgtccggc ctcttcgagg gcaatctggt
    16621 taaaggtcag ttgatttttg cctttacccg caatctcttc aaaagtgatg gttttgtgct
    16681 tcaaccaacg ttccgcgagg ctgtccatat cgtgacgccc ggcaacgcta ttgagaatgt
    16741 aggactccag catggtatca aacgcaatcc cacgcagctc aatgccgtaa ttcgccagaa
    16801 taccgcgatc gtatttcagg ttttgcccga ccttcagcgc cttttcatct tccagcagcg
    16861 gttttagcaa ctcgagtgca cgctcgcgag agatttgatc gggcgcatca agataatcat
    16921 gagcaaccgg aatatatgcc gctacgcctg gctcgatagc aaaagaaagc ccgaccaggt
    16981 tagcagagat gttatcaagg ctgtcggttt cggtatcaaa tgcaaatacc ggcgcttttt
    17041 ccagcttcgc aatccacgct ttcagtgttt cttcatcaag gatggtgacg tagttgtcat
    17101 aagaaatcac cgttgccgtc acttctggcg cttcgtctgc aacactggtt tcctgcggct
    17161 tcgcggctgg ttttgcccct ttggcctgta accatttgcc cgcttcgaca tcagcagtcc
    17221 agcgtttgaa ctcatacttt ttgaacagcc ccaacaactc ttccgctgcc ggttgctgca
    17281 cttccagttg ttcacaggtc agctccagtt caacgtcggt tttaatcgtc gccagctggt
    17341 atgagagata agcaacttct ttgttttgct cgagcttcgc tgccattgtt ttcgcgccac
    17401 ggaagctcaa cccagcaatt ttttctggct cggcatacag cgtatccagc ccgcccagac
    17461 cttgcagcaa tgcctgcgcg gttttttcac cgacgcccgg tacgccaggg atgttatcgg
    17521 aggagtcacc catcagcgcc aggaaatcga tgatcagttc tggcggcacg ccgtacttat
    17581 tcaccacctc ttccggtccg aggatggtat tcgtcatggt attgataagc gtaatatttg
    17641 gcgtcaccag ctgcgccata tctttatcgc cagtgctgat cagcaccgga cgcccggctt
    17701 tttcggcttc gcgcgccaga gtaccgataa cgtcgtccgc ttctacgcca gaaaccgcca
    17761 gcagcggcag tcccatcgct ttaaccatcg cgtgcagagg ttcgatttgt gctctcagat
    17821 cgtccggcat tggcgggcga tgtgatttgt aatgttcaaa cagttcatca cgaaaggttt
    17881 ttcccttggc gtcaaagacc accgctgcat gcgtcggttt atattgcatg atcagactgc
    17941 gcagcatgtt gaggacacca tacatcgcac cggtcggctc gcctgcgctg ttagtcagcg
    18001 ggggaaacgc gtgatatgcg cgataaagat aagatgaacc atctacaagg ataagtggat
    18061 tttgggggat ctgaaccata atgtccgtgc ctgtttatca gattatgggt aaaggatgcc
    18121 acagacagga taaaaacatg agtttttcac cgcttttcgt gaaaatcttt tgtagatctt
    18181 ctggatcgct cgcaaatcgt catgtggata actttgtgca taaattattt acatcgcttt
    18241 taatttatta tcatgctttt tacagtatga tgtttgtctt tgtttttcat gtagttaaaa
    18301 ataaagccat ccctaataat tgagataatg ggattttttc taatgtggat agatatgaat
    18361 tatttttctc cttaaggatc atccgttatt tgggtcgttt tctgctaaaa tctgcgcctt
    18421 gcgcttcttt agcgcactgt ctatggctaa ccttttgaat aaattcatta tgacgagaat
    18481 actcgctgcg ataacccttt tgctgagtat cgtattgacc attttggtca ctattttttg
    18541 ttccgtcccg atcatcattg ccgggattgt aaaactattg ctacctgtgc cagtcatttg
    18601 gcgaaaggtt tcgcgttttt gtgattttat gatgtattgc tggtgtgaag gtctggcggt
    18661 attactgcat ctgaacccac tcctgcaatg ggaagttcac gggctggaag ggttaagtaa
    18721 gaagaactgg tatctgctta tttgtaacca ccgtagttgg gcagatattg tcgtactgtg
    18781 cgtgctgttt cgtaagcaca ttccgatgaa taaatatttc ctcaagcaac agctggcctg
    18841 ggtgccattt cttggcctgg cgtgctgggc gctggatatg ccgtttatga agcgttattc
    18901 ccgcgcttat ttattacgtc atccggagcg acgtggtaaa gatgttgaaa ccactcggcg
    18961 ttcttgtgaa aagtttcgcc tgcatcccac caccattgtc aatttcgttg aaggctcccg
    19021 tttcacgcaa gaaaaacatc agcaaaccca ctccactttt caaaacttgt tgccaccaaa
    19081 ggcggcaggc attgcgatgg cgctaaatgt actgggtaaa caattcgata aactgcttaa
    19141 tgttacgctg tgttatccgg acaataaccg tcagccgttc ttcgatatgt taagcggtaa
    19201 actgacgcga attgtcgttc atgtggattt acagcctatt gccgatgagt tacatggcga
    19261 ctacatcaat gacaaaagct ttaagcgcca ttttcagcaa tggctgaact cactgtggca
    19321 ggaaaaagac cgacttctga cgtcgttgat gtcatcacag cggcaggaca agtaaatttt
    19381 gctcgcctct gaatgagcag aggcgagtga gtattttaat gaacaaaacg tccggcacga
    19441 gacataaatt cttcttcgct catctcctgt ccgttaaaaa caactttacc cggtgtataa
    19501 cgcagttgca gcggggcggt attgttgtca atcgtgatta actgaaacat ctgacctaag
    19561 gtcatcatcc cgctgatttg tttatcagcc cgcttttgcg ctttttccgc atccattcct
    19621 tcagataaat taagctgttt tgcggtttct gtgacgacat taagcggtaa cttcacatca
    19681 aaattgagcg atttgatatc tttgtttgtg gatgatgaag atttggctgg gtcggcaata
    19741 ctgatatcca gattggcatt tagttcgccg agtgcgttct tccatcttac cggttgttta
    19801 atggtcggct cactttgttg taataacggt aaatactctt tgaacaatgc agcattcact
    19861 tcttgcagag caacttcatc gtttgctaac tcagggtgtg cagcaagctg cttctgcatc
    19921 gcaatgttat actggatgat aaattggcgc actgctgagg gatcaataga ttcagcaatc
    19981 aatgaccact caccactacc gagttgctga ttcccttttg ttaacttatc aagttcgtag
    20041 gtcagattga cattgatata atctttgtct ttaacgcgat ccagcctggt ttttgcaacg
    20101 aaagcatcga tttgggcaac gtcttccccc tgattgataa tattaacctg attaaatttc
    20161 gactcgcttt caccaaccgg aaatttcttt tcttctaatc gtgtcagaga atcaatggta
    20221 aaactttttg ccgttacttt gttcattggt gataattgca gaacaatatc ttcgactttg
    20281 ccttcaatat ccaggttaga caatgaacta ccatcaccat taaaagtaaa ctggccctca
    20341 ccaaaagaaa actttccata ctctgcaggg gcaacatcta atgtcgtaga gaatgagcca
    20401 ccaaacgcga atcgcaatgt cgcttccacg ggcgatttat ttttcgcggc gataaatagc
    20461 ggttgtgtca gttcattatt cactaagttc acttttgccg ctgccagtgc tgggatgaca
    20521 ttaccatgca ttaacattgt gatgggcaac ggaccgtgct caacatccac atcaaatgca
    20581 accttctggc ctggcttgat attgagatcg ggtgcaccgt tatcaaatga aatttgcatt
    20641 tgaaaatggg aattaaaaaa gcctttgtca aagtttttat aacttaacgt catatcgtag
    20701 gcatgttcac ctttcttttt agcatcgtta aaatctttaa taaatttttc gacaccaggc
    20761 tgaatttgcg tacctgtgta ccatgtgcca ccaccccaga ttacggctaa cgcaacaata
    20821 acacctgtag ctgacttacg tatcatataa atattccctg ataaaacagc aaaactttga
    20881 atatccactt atgctgaaat aatgtccagc ggcaggatgt attatcagaa tgtatttata
    20941 tttattaaat aataaaaaaa tcccgtgaat attcacgggc tttatgtaat ttacattgaa
    21001 ttattttttc tcggacagat atttcactgt atcagcatac tgctgaacaa aaacatccat
    21061 attgctggta tccataccct gcggattcag ctgatattta ccgttaacaa acatcgccgg
    21121 aacaccgcgc aattgcacgt cagctgcagc tttttcctgc tgagctacca gagatttcac
    21181 cacgaagctg ttccacgccg cgtcgtactc ttcaccttta atacctgcgt tgataaatac
    21241 atcgcggata tcagaagcag aacgaatggt ctgggttttc tgtacgcctt caaacagcgg
    21301 aacagtcact ttgtcttcca cgcccagcgc catcgccaca gcccatgcct gagtcagatc
    21361 tttgcccagg tcaccaccca tgaagttgac gtggtattta gtcatcttca cgccttccgg
    21421 cagttttttc ttcacattat cagaaatatg cagaacttct tcaaactgat agcagtgcgg
    21481 acagaagaaa gagaaaaact ccagcacttg cggcgcgcca gctaccggtt tttccagggt
    21541 agtgtactgt ttaccatctt catactgcgc cgccgatgcg ctaaacgcta aaactaaacc
    21601 agccagcgcc agccaaatct ttttcatgat ctactctctc cgattaatac ataggtgtta
    21661 attgtaaagg gggttcttgt agaacttttg cctgttctat aaaagtcgcc gtttgtcgca
    21721 gccagtaatc ttccccggtt aaccacggga aatttttcgg gaacgcggga tcagcccaac
    21781 gccgcattag ccaggcaaga taataaacca aacgcatggc gcgtaaaggt tcaatcagtc
    21841 cgatttcagc ggtgtcgaac tcgctaaatt cttcataagc ttcaataata gtttccagtt
    21901 gcatccgctg ctcggcttta tcgccattga gcaacatcca caaatcctga atagctggac
    21961 cattacgtgc atcatccaga tcaacaaaca ttggaccatc gcgccagaga atattcccgg
    22021 cgtggcagtc tccatgtaag cgcagaacgg tggaatcttc ccgccagtgc gctgtaacgg
    22081 cggcgatcag ctcatctgtc gctttcagga atgccgcttt caacccggaa ggtatcagtg
    22141 tagcgtcctc aaacagcttg cgtggctcaa tgagatattc attcagaccg atggtcgggc
    22201 gatggataaa aagctgtttg cgccccgtct ggtgcatacg ccctaaataa cgcccaaccg
    22261 cttccatctg atcgatatta tcagcttcga actggcgacc accgacgctt ggaaaaacag
    22321 cgaaataaaa tccctgatga ttcaataaag tctgaccgtt aaaggccaca ggtgctgcga
    22381 ccggaacttc atcatttacc aactgcaacg caaattgatg ttctccgagg atttgatcgg
    22441 ctgtccaacg ttcagggcga taaaatttga cgacaatacg tcgacgatct tcgtcctgaa
    22501 attgatagac acggttttca tagctgttaa gcggggtaag accggaatcc acccggatcc
    22561 cttgctcaaa tagagcatcc atgatggtat ccgggtgtag tgtctggaaa gtaaaagcgc
    22621 tgttgttcat cccatcatcc ggaaaacatt acgaatgatg aaggatatca tttcacgatg
    22681 attttggtgg cgccgcttac aagcttttac tctttaatta cgccgcgagc gcgtaacagc
    22741 gccgttttga agtcttcttc ataatctttc tgcaaacccg ggatcaccgc atctttcgcg
    22801 gaatcacgca ttttcaggtg atagatcaga atgtcatccg tcaaatccgc cagttcgccg
    22861 tcaaaacctg actctttcgc cagtttctgc aaaaattgca acaggttaag gtctggctct
    22921 ttttgccagg ctggctggag gaattcaata acttcattca gacgtttaca tttcatagtg
    22981 atgctcctta ctcttgagac agacacgtta gcagggtcaa tcccacaata aaagaggcga
    23041 tatcggtgaa tctgatgacg acgataacag gcgttgtgct ggcaggcggt aaagccagac
    23101 gaatgggcgg cgtagataaa ggattgcttg aattaaacgg caaaccatta tggcaacatg
    23161 tcgctgacgc gcttatgacg cagctctctc acgtcgtggt taatgccaat cgtcatcagg
    23221 aaatctatca ggcaagcggt ctgaaagtga ttgaagattc actggcggat tacccaggcc
    23281 ctctggcagg aatgctttca gtaatgcagc aggaagctgg tgagtggttt ttgttttgcc
    23341 cgtgcgatac gccttacatt ccccctgatt tagcagcccg gcttaatcat cagcgcaaag
    23401 atgcgcctgt cgtgtgggtc catgacggtg aacgcgatca cccgactatt gctctggtaa
    23461 accgcgctat tgagccttta ttactggaat atctgcaagc aggagaacgc cgggtaatgg
    23521 catttatgcg tctggctggc ggtcatgcgg ttgatttcag cgatcataaa gatgcatttg
    23581 ttaacgtgaa tacgccagag gagcttgccc gatggcagga aaaacgatga taccgttact
    23641 cgcctttgcc gcgtggagtg gtaccggaaa aactacgctt ttgaaaaaac tgatcccggc
    23701 attatgcgcc agagggatcc gtccagggct gattaagcat acgcaccatg atatggatgt
    23761 tgataagcca ggcaaagata gctatgagct gcgcaaggct ggcgcggcac aaaccatcgt
    23821 tgccagccag caacgatggg ccttgatgac ggaaacacca gacgaagaag agctggatct
    23881 acagtttctc gcaagtcgaa tggatacctc aaagctggat ttgattctgg tcgaagggtt
    23941 taagcatgaa gagatcgcaa agattgtgct gtttcgcgat ggagccggac atcgacctga
    24001 agaattagtg atagacaggc atgttattgc tgtagccagt gatgtgccgc ttaatcttga
    24061 tgtcgcatta ctggatatta atgatgttga ggggctggct gattttgtag tggagtggat
    24121 gcaaaagcag aacggataag caagagtagg ctggatcaga cgcagccagt gtcgcatccg
    24181 acctttttct gcacca
//
LOCUS       DADMHM010000045        23506 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.046, whole genome shotgun sequence.
ACCESSION   DADMHM010000045 DADMHM010000000
VERSION     DADMHM010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 23506)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23506)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23506
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.046"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(298..612)
                     /gene="pspE"
                     /locus_tag="JN125_001572"
     CDS             complement(298..612)
                     /gene="pspE"
                     /locus_tag="JN125_001572"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase PspE"
                     /protein_id="HAY8871395.1"
                     /translation="MFKKGLLALALVFSLPVFAAEHWIDVRVPEQYQQEHVQGAINIP
                     LKEVKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENAGGLKDIAMPKV
                     KG"
     gene            complement(687..908)
                     /gene="pspD"
                     /locus_tag="JN125_001573"
     CDS             complement(687..908)
                     /gene="pspD"
                     /locus_tag="JN125_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707216.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein PspD"
                     /protein_id="HAY8871396.1"
                     /translation="MNTRWQQAGQKVKLGFKLAGKLVLLTALRYGPAGVAGWAIKSVA
                     RRPLKMLLAVALEPLLSRAANKLAQRYKR"
     gene            complement(917..1276)
                     /gene="pspC"
                     /locus_tag="JN125_001574"
     CDS             complement(917..1276)
                     /gene="pspC"
                     /locus_tag="JN125_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response membrane protein PspC"
                     /protein_id="HAY8871397.1"
                     /translation="MAGINLNKKLWRIPQQGMVRGVCAGIANYFDVPVKLVRILVVLS
                     IFFGLALFTLVAYIILSFALDPMPDNMAFGEQLPSSSELLDEVDRELAASETRLREME
                     RYVTSDTFTLRSRFRQL"
     gene            complement(1276..1500)
                     /gene="pspB"
                     /locus_tag="JN125_001575"
     CDS             complement(1276..1500)
                     /gene="pspB"
                     /locus_tag="JN125_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response membrane protein PspB"
                     /protein_id="HAY8871398.1"
                     /translation="MSALFLAIPLTIFVLFVLPIWLWLHYSNRSGRSELSQSEQQRLA
                     QLVDEAKRMRERIQALESILDAEHPNWRDR"
     gene            complement(1554..2222)
                     /gene="pspA"
                     /locus_tag="JN125_001576"
     CDS             complement(1554..2222)
                     /gene="pspA"
                     /locus_tag="JN125_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein PspA"
                     /protein_id="HAY8871399.1"
                     /translation="MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVR
                     STSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIK
                     SLEHEVTLVDDTLARMKKEIGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGK
                     LDEAMARFESFERRIDQMEAEAESHSFGKQKSLDDQFAELKADDAISEQLAQLKAKMK
                     QDNQ"
     gene            2389..3366
                     /gene="pspF"
                     /locus_tag="JN125_001577"
     CDS             2389..3366
                     /gene="pspF"
                     /locus_tag="JN125_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309907.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage shock protein operon transcriptional
                     activator"
                     /protein_id="HAY8871400.1"
                     /translation="MAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKEL
                     IASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGG
                     TLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPATVNEGT
                     FRADLLDRLAFDVVQLPPLRERESDIMLMAEHFAIQMCREIKLPLFPGFTERARETLL
                     NYRWPGNIRELKNVVGRSVYRHGTSDYPLDDIIIDPFKRRPPEDAIAVSETTSLPTLP
                     LDLREFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI"
     gene            complement(3486..4751)
                     /gene="puuE"
                     /locus_tag="JN125_001578"
     CDS             complement(3486..4751)
                     /gene="puuE"
                     /locus_tag="JN125_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-aminobutyrate transaminase"
                     /protein_id="HAY8871401.1"
                     /translation="MSNNEFHQRRLSATPRGVGVMCNFFAQSAENATLKDVEGNEYID
                     FAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVSGQA
                     KTAFFTTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGP
                     FPGSVYHVPYPSDLHGISTQDSLDAIECLFKSDIEAKQVAAIIFEPVQGEGGFNVAPK
                     ELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKLDLMTMAKSLAGGMPLS
                     GVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTL
                     IDAKESVPAIAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGAYG
                     NVIRFLYPLTIPDAQFDAAMKILQDALSD"
     gene            complement(4789..6069)
                     /locus_tag="JN125_001579"
     CDS             complement(4789..6069)
                     /locus_tag="JN125_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HAY8871402.1"
                     /translation="MTEHTSSYYAASANKYVPFDTLNESITCDVCVVGGGYTGLSSAL
                     HLAEAGFDVVVLEASRIGFGASGRNGGQLVNSYSRDIDVIEKSYGMDTAPMLGSMMFE
                     GGEIIRERIKRYQIDCDYRPGGLFVAMNDKQLATLEEQKENWERYGNKQLELLDANAI
                     RREVASDRYTGALLDHSGGHIHPLNLAIGEADAIRLNGGRVYELSAVTQIQHTTPAVV
                     RTAKGQVTAKYVIVAGNAYLGDKVEPELAKRSMPCGTQVITTERLSEDLACSLIPKNY
                     CVEDCNYLLDYYRLTADNRLLYGGGVVYGARDPDDVERLVVPKLLKTFPQLKGVKIDY
                     RWTGNFLLTLSRMPQFGRLDTNIYYMQGYSGHGVTCTHLAGRLIAELLRGDAERFDAF
                     ANLPHYPFPGGRTLRVPFTAMGAAYYSLRDRLGV"
     gene            complement(6071..7558)
                     /gene="puuC"
                     /locus_tag="JN125_001580"
     CDS             complement(6071..7558)
                     /gene="puuC"
                     /locus_tag="JN125_001580"
                     /EC_number="1.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase PuuC"
                     /protein_id="HAY8871403.1"
                     /translation="MNFHHLAYWQDKALSLAIENRLFINGEYTAAAENETFETVDPVT
                     QAPLAKIARGKSVDIDRAVSAARGVFERGDWSLSSPAKRKAVLNKLADLMEAHAEELA
                     LLETLDTGKPIRHSLRDDIPGAARAIRWYAEAIDKVYGEVATTSSHELAMIVREPVGV
                     IAAIVPWNFPLLLTCWKLGPALAAGNSVILKPSEKSPLSAIRLAGLAKEAGLPDGVLN
                     VVTGFGHEAGQALSRHNDIDAIAFTGSTRTGKQLLKDAGDSNMKRVWLEAGGKSANIV
                     FADCSDLQKAASSTAAGIFYNQGQVCIAGTRLLLEESIADEFLALLKQQAQNWQPGHP
                     LDPATTMGTLIDCAHADSVHSFIREGEGKGQLLLDGRNAGLAAAIGPTIFVDVDPNAS
                     LSREEIFGPVLVVTRFTSEEQALQLANDSQYGLGAAVWMRDLSRAHRMSRRLKAGSVF
                     VNNYNDGDMTVPFGGYKQSGNGRDKSLHALEKFTELKTIWISLEA"
     gene            complement(7833..8390)
                     /gene="puuR"
                     /locus_tag="JN125_001581"
     CDS             complement(7833..8390)
                     /gene="puuR"
                     /locus_tag="JN125_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001464354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator PuuR"
                     /protein_id="HAY8871404.1"
                     /translation="MSDEGLAPGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDK
                     VSPAISTLQKLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLVHNGN
                     PNRTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTINGQDYHLVAGQSYAINT
                     GIPHSFSNTSAGICRIISAHTPTTF"
     gene            complement(8417..9180)
                     /gene="puuD"
                     /locus_tag="JN125_001582"
                     /pseudo
     CDS             complement(8417..9180)
                     /gene="puuD"
                     /locus_tag="JN125_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415814.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase"
     gene            9393..10811
                     /locus_tag="JN125_001583"
     CDS             9393..10811
                     /locus_tag="JN125_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309901.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine synthetase"
                     /protein_id="HAY8871405.1"
                     /translation="METNIVEVENFVQQPEERRGSAFTQEVKRYLERYPNTQYVDVLL
                     TDLNGCFRGKRIPVSSLKKLEKGCYFPASVFAMDILGNVVEEAGLGQEMGEPDRTCVP
                     VLGSLTPSAADPEFIGQMLLTMVDEDGAPFDVEPRNVLNRLWQQLRQRGLFPVVAVEL
                     EFYLLDRQRDAEGYLQPPCAPGTDDRNTHSQVYSVDNLNHFADVLNDIDELAQLQLIP
                     ADGAVAEASPGQFEINLYHTDNVLEACDDALALKLLVRLMAEKHKMHATFMAKPYEEH
                     AGSGMHIHISMQNNRGENVLSDTEGEDSPLLKKMLAGMIDLMPSSMALLAPNVNSYRR
                     FQPGMYVPTQASWGHNNRTVALRIPCGDRHNHRVEYRVAGADANPYLVMAAIFAGILH
                     GLDNELPLQEEVEGNGLEQEGLPFPIRQSDALGEFIENDHLRRYLGERFCHVYHACKN
                     DELLQFERLITETEIEWMLKNA"
     gene            10960..11124
                     /locus_tag="JN125_001584"
     CDS             10960..11124
                     /locus_tag="JN125_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871406.1"
                     /translation="MPMIKSPHGEGGCVCAPPATDWTPSPLLPLLNRFDFRSTRPQTL
                     LRRGGSNYGY"
     gene            11114..12499
                     /gene="puuP"
                     /locus_tag="JN125_001585"
     CDS             11114..12499
                     /gene="puuP"
                     /locus_tag="JN125_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415812.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine/proton symporter PuuP"
                     /protein_id="HAY8871407.1"
                     /translation="MAINSPLNIAAQPGKTRLRKSLKLWQVVMMGLAYLTPMTVFDTL
                     GIVSGISDGHVPASYLLALAGVLFTAISYGKLVRQFPEADSAYTYAQKSINPHVGFMV
                     GWSSLLDYLFLPMINVLLAKIYLSALFPEVPPWVCVVTFVAILTAANLKSINLVANFN
                     TLFVLVQISIMVVFIFLVVQGLHKGEGVGTVWSLQPFISENAHLIPIITGATIVCFSF
                     LGFDAVTTLSEETPDAARVIPKAIFLTAVYGGVIFIAASFFMQLFFPDISRFKDPDAA
                     LPEIALYVGGKLFQSIFLCTTFVNTLASGLASHASVSRLLYVMGRDNVFPERVFGYVH
                     PKWRTPALNVIMVGIVALSALFFDLVTATALINFGALVAFTFVNLSVFNHFWRRKGMN
                     KSWKDHFHYLLMPLVGALTVGVLWVNLESTSLTLGLVWASLGGAYLWYLIRRYRKVPL
                     YDGDRTPVSET"
     gene            12633..12878
                     /locus_tag="JN125_001586"
     CDS             12633..12878
                     /locus_tag="JN125_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmjA family protein"
                     /protein_id="HAY8871408.1"
                     /translation="MNHDIPLKYFDIADEYATECAEPVADAERTPLAHYFQLLLTRLM
                     NNEEISEEAQHEMAAEAGINPVRIDEIAEFLNQWGNE"
     gene            13191..14834
                     /gene="sapA"
                     /locus_tag="JN125_001587"
     CDS             13191..14834
                     /gene="sapA"
                     /locus_tag="JN125_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein SapA"
                     /protein_id="HAY8871409.1"
                     /translation="MRQVLSSLLVIAGLVSGQAIAAPESPPHADIRDSGFVYCVSGQV
                     NTFNPSKASSGLIVDTLAAQFYDRLLDVDPYTYRLMPELAESWEVLDNGATYRFHLRR
                     DVPFQKTDWFTPTRKMNADDVVFTFQRIFDRNNPWHNVNGSNFPYFDSLQFADNVKSV
                     RKLDNHTVEFRLAQPDASFLWHLATHYASVMSAEYARKLEKEDRQEQLDRQPVGTGPY
                     QLSEYRAGQFIRLQRHDDFWRGKPLMPQVVVDLGSGGTGRLSKLLTGECDVLAWPAAS
                     QLSILRDDPRLRLTLRPGMNVAYLAFNTAKPPLNNPAVRHALALAINNQRLMQSIYYG
                     TAETAASILPRASWAYDNEAKITEYNPAKSREQLKALGLENLTLKLWVPTRSQAWNPS
                     PLKTAELIQADMAQVGVKVVIVPVEGRFQEARLMDMSHDLTLSGWATDSNDPDSFFRP
                     LLSCAAIHSQTNLAHWCDPKFDSVLRKALSSQQLAARIEAYDEAQSILAQELPILPLA
                     SSLRLQAYRYDIKGLVLSPFGNASFAGVYREKQDEVKKP"
     gene            14831..15796
                     /gene="sapB"
                     /locus_tag="JN125_001588"
     CDS             14831..15796
                     /gene="sapB"
                     /locus_tag="JN125_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter permease SapB"
                     /protein_id="HAY8871410.1"
                     /translation="MIIFTLRRILLLIVTLFLLTFVGFSLSYFTPHAPLQGASLWNAW
                     VFWFNGLIHWDFGVSSINGQPIAEQLKEVFPATMELCILAFGFALIVGIPVGMIAGIT
                     RHKWQDNLINAIALLGFSIPVFWLALLLTLFCSLTLGWLPVSGRFDLLYEVKPITGFA
                     LIDAWLSDSPWRDEMIMSAIRHMILPVITLSVAPTTEVIRLMRISTIEVYDQNYVKAA
                     ATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAI
                     RQQDYAAISAGVMVCGSLVIIVNVISDILGAMANPLKHKEWYALR"
     gene            15783..16673
                     /gene="sapC"
                     /locus_tag="JN125_001589"
     CDS             15783..16673
                     /gene="sapC"
                     /locus_tag="JN125_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter permease SapC"
                     /protein_id="HAY8871411.1"
                     /translation="MPYDSVYSEKRPPGTLRTAWRKFYSDASAMVGLYGCAGLAVLCI
                     FGGWFAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGTDDLGRDVLSRLLSGAAPTVGGA
                     FVVTLAATICGLVLGTFAGATHGLRSAVLNHILDTLLAIPSLLLAIIVVAFAGPSLSH
                     AMFAVWLALLPRMVRSIYSMVHDELEKEYVIAARLDGASTLNILWFAVMPNITAGLVT
                     EITRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDALELIYVAPWTVMLPGAAIMIS
                     VLLVNLLGDGVRRAIIAGVE"
     gene            16673..17665
                     /gene="sapD"
                     /locus_tag="JN125_001590"
     CDS             16673..17665
                     /gene="sapD"
                     /locus_tag="JN125_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter ATP-binding protein
                     SapD"
                     /protein_id="HAY8871412.1"
                     /translation="MPLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGS
                     GKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSARERRKLVGHNVSMIFQEPQSCL
                     DPSERVGRQLMQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT
                     EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHD
                     LQMLSQWADKINVLYCGQTVETAPSKELVTMPHHPYTQALIRAIPDFGSAMPHKSRLN
                     TLPGAIPLLEQLPIGCRLGPRCPYAQRECIVTPRLTGAKNHLYACHFPLNMEKE"
     gene            17667..18473
                     /gene="sapF"
                     /locus_tag="JN125_001591"
     CDS             17667..18473
                     /gene="sapF"
                     /locus_tag="JN125_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter ATP-binding protein
                     SapF"
                     /protein_id="HAY8871413.1"
                     /translation="MIETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLA
                     IIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSFRSQRIRMIFQDPSTSLN
                     PRQRISQILDFPLRLNTDLEPEQRRKQIIETMRMVGLLPDHVSYYPHMLAPGQKQRLG
                     LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHIS
                     DQVLVMHQGEVVERGSTADVLASPLHELTKRLIAGHFGEALTADAWRKDR"
     gene            18541..18894
                     /locus_tag="JN125_001592"
     CDS             18541..18894
                     /locus_tag="JN125_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF559 domain-containing protein"
                     /protein_id="HAY8871414.1"
                     /translation="MMDKIKSNARDLRRNLTLQERKLWRYLRSRRFGDFKFRRQHPVG
                     SYILDFACCSARVVVELDGGQHDLAVAYDTRRTSWLESQGWTVLRFWNNEIDCNEEAV
                     LEIILQELNRRSPSP"
     gene            19262..20050
                     /gene="fabI"
                     /locus_tag="JN125_001593"
     CDS             19262..20050
                     /gene="fabI"
                     /locus_tag="JN125_001593"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HAY8871415.1"
                     /translation="MGFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKL
                     KGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDG
                     DYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMG
                     LAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRR
                     TVTIEDVGNSAAFLCSALSAGISGEVVHVDGGFSIAAMNELELK"
     gene            20195..21322
                     /locus_tag="JN125_001594"
     CDS             20195..21322
                     /locus_tag="JN125_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309887.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMD domain-containing protein"
                     /protein_id="HAY8871416.1"
                     /translation="MEQRHITGKSHWYHETQSSTAEYDVLPLVPEAAKVSDPFLLDVI
                     LDEETLAPFLSWLVPARVLAVELFPDQLTVTRSQTFTAYERLSTALTVAQVCGVQRLC
                     NYYSARLTPLPGPDSSRESNHRLAQITQYARQLASSPSIIDNRSRQHLNDVDLTAWDC
                     VIINQIIGFIGFQARTIATFQAYLGHPVRWLPGLEIQNYADASLFADESIRWRSSYEV
                     EKLPEEYTKSSTAELCQLAETLSLHPISLSLLERLLNSTRVNTQPDNKLAALLCARIN
                     GSPACFAACMDSSNEYKKISPLLRKGENEINQWADRHSVEHATVQAIQWLTRAPDRFS
                     TAQFSPLLEHEQSSTQIINLLVWSGLCGWINRLKIALGETY"
     gene            21390..23324
                     /gene="rnb"
                     /locus_tag="JN125_001595"
     CDS             21390..23324
                     /gene="rnb"
                     /locus_tag="JN125_001595"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exoribonuclease II"
                     /protein_id="HAY8871417.1"
                     /translation="MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSY
                     FIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLAIVPD
                     HPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVP
                     WWVTLARHNLEKEAPDGVATEMLDEGLVREDLTALDFVTIDSASTEDMDDALFAKALP
                     DDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRAN
                     EVRPVLACRMTLSADGAIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWQPESEAIA
                     EQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEA
                     MIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFC
                     KLRRELDAQPTGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINH
                     RLLKAVIKGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTDTRFAA
                     EIVDISRGGMRVRLVDNGAIAFIPAPFLHAMRDELVCSQENGTVQIKGETVYKVTDVI
                     DVTIAEVRMETRSIIARPVA"
     gene            complement(23402..23506)
                     /locus_tag="JN125_001596"
                     /pseudo
     CDS             complement(23402..23506)
                     /locus_tag="JN125_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791239.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         5316 a         6217 c         6116 g         5857 t
ORIGIN      
        1 agacgcgtta caagtttctg taaatgagtt gcggtaaatg ttccaccgta gatttcgtcc
       61 aggtaataag taattttctg tttcatgttg cctttcagtg gtagcgatcc catgaaacga
      121 gagactactc cgcagaaaat aaactgtcaa ttgagcacaa gagttttagt cacgcaggaa
      181 atcatttttt accagggaaa aagcgtattt gtgagctgac gcaaataatc tatggggatg
      241 taaataaggt gtgacagaaa aaaaacggcg cataagcgcc gctcatggtg aattctttta
      301 acctttgacc ttcggcattg cgatgtcttt caagccaccg gcgttctcaa cgtgggtata
      361 tcccatctcg ctaaggatct cttttgcttg ccctgactgg cgtccggcat tgcaatacac
      421 tttcacggtg tcgtttttat ccggaacggc ggtggcaatg cgctctttca cttccttcag
      481 gggaatattg atggccccct gaacgtgctc ttgctgatac tgctctggaa cacgaacatc
      541 gatccagtgt tcagcggcga aaacgggcag tgaaaacacc agtgccagag caagtaagcc
      601 ttttttaaac atgtaagcgt ccttctatgg atgaaaattg ccatccatta tacgcctgag
      661 atttaacaat ttttgcgaaa ctcccctcac cttttataac gctgtgccag tttattagca
      721 gcccgactta acagcggttc cagcgccaca gccagcaaca ttttcagcgg tcggcgagca
      781 actgatttta tcgcccagcc cgctacaccc gccgggccat agcgcagtgc ggtaagaagt
      841 accagcttgc ctgctaattt gaaaccaagc tttacctttt gcccggcctg ttgccagcga
      901 gtattcataa ctttcctcac agttgacgga aacggctacg taacgtgaaa gtatcggaag
      961 tgacataacg ttccatctcg cgtaaacgcg tttcacttgc cgccagttca cggtcgactt
     1021 catccagcaa ttcgctgctg gagggtagct gctcaccaaa ggccatgttg tccggcattg
     1081 gatcaagcgc aaatgacaaa atgatgtaag caaccagggt aaacagcgcc agaccgaaga
     1141 aaatcgacag caccaccagg atacgcacca gttttaccgg tacatcaaaa tagttggcaa
     1201 tcccggcgca gacgccgcgg accatgccct gctgtggaat acgccataat tttttattga
     1261 gattaatgcc cgccattagc gatccctcca gttcggatgt tctgcatcaa gaatagattc
     1321 cagcgcctga atacgttcgc gcatccgttt tgcttcatca accagttgcg ctaatcgctg
     1381 ctgctcactt tgcgacaatt cactgcgacc agaacgattg ctgtaatgca gccataacca
     1441 gatcggtaaa acaaacagca caaaaatggt taacggaata gccagaaata gcgcgctcat
     1501 aagtactcct tagacgatga gcggcggcgc gttcggaggc cgcctggatg ttattattga
     1561 ttgtcttgct tcattttggc ttttaattgt gccagttgtt cgctgattgc atcatcggct
     1621 ttcagttcgg caaactgatc gtccagcgat ttttgtttac cgaagctgtg gctttctgct
     1681 tccgcttcca tctggtcaat acgacgttcg aaagattcga aacgagccat tgcttcatcc
     1741 agtttgccac tgtccagctg acgacgcaca tcgcgcgacg agtttgccgc ctgatggcgt
     1801 aacatcaatg cctgctggcg agcgcgtgtt tcgctcaatt tgttttccag ctcaccgatc
     1861 tctttcttca tgcgtgccag cgtatcgtcc accagcgtca cttcatgttc cagactctta
     1921 atcagatcgg tcagtttctg tttttcaatt aacgccgcac gtgccaaatc ctctctctct
     1981 ttcagcagcg ccagttcggc tttttcctgc cattcaactt cacgcgccga cgcttgttca
     2041 atacggcgag tcagctgttt cttttctgcc aacgcacgcg ccgaagtaga acgtacttca
     2101 accagagtat cttccatctc ctggatcatc agacgcacca gtttctgtgg atcttccgct
     2161 ttctctaaca gagcgttgat gttggcattc acgatgtcgg caaagcgaga aaaaataccc
     2221 ataatgttgt cctcttgatt tctgcgttca ggattgtcct gctgaactgt taatacaatt
     2281 tgcgtgccaa ttttttatct ttttgattta taaagatctg attgaagaat catcagcaac
     2341 atgccaggat gaattagcga attacactaa caagtggcga atttcatcat ggcagaatac
     2401 aaagataatt tacttggtga ggcgaacagc tttctcgaag tgctggaaca ggtttcgcat
     2461 ctcgcaccgc tggacaaacc ggtgctcatc atcggcgaac gcggcaccgg taaagagctg
     2521 attgccagcc gcctgcatta tctctcctcc cgttggcaag ggccgtttat ttcccttaac
     2581 tgcgcggcgt taaatgaaaa tctgctggat tccgaactgt ttggtcacga agcgggggcg
     2641 tttaccggtg cgcaaaaacg tcatccaggg agatttgaac gtgccgacgg cggtacgcta
     2701 tttcttgatg aactcgctac ggcaccgatg atggtgcagg agaaattatt gcgcgtgatt
     2761 gagtacggtg aactggagcg cgttggcggc agccagccat tgcaggtgaa tgtgcggttg
     2821 gtatgcgcga cgaatgccga tctcccggcg acggtcaatg aaggcacttt tcgcgctgac
     2881 ctgctcgacc gactggcttt tgatgttgta caactgccac cactgcgcga gcgcgaaagc
     2941 gacataatgt tgatggcaga acactttgcc atccagatgt gtcgggaaat caagctgcct
     3001 ctgttcccgg ggtttacgga gcgcgccaga gaaacattgc tgaattatcg ttggccggga
     3061 aatattcgtg aattgaaaaa cgtggtggga cgttcagtgt atcgccacgg caccagcgat
     3121 tatccgcttg atgacatcat tattgatccc tttaaacggc gtccgcctga agacgctatc
     3181 gccgtttcag aaaccacctc gcttccaaca ctgccgctgg atttacgtga gtttcagatg
     3241 cagcaggaaa aagagttgct gcaactcagt ttgcaacaag ggaaatataa ccagaagcgc
     3301 gcggctgaat tactggggtt aacttatcat cagttccgcg cgttgttgaa aaagcaccag
     3361 atttagcgaa gttgagcaat acaacttgcc ggatgcggcg tgaatgcttt attcggcata
     3421 cataatcaat aagtcgtttg caggcctgat aagcgcagcg catcagacat tattgcgttg
     3481 ggctattaat cgctcagcgc atcctgcaaa attttcattg ccgcatcgaa ttgcgcatcc
     3541 gggatggtca gcggatacag gaagcgaatc acgttgccgt atgcgccaca ggtcagcagg
     3601 agcagcccct gcgccagcgc gcgttgctgg attttctgtg caatcgccgc tgacggctcg
     3661 cccgtttgcg gatcgttaaa ctctgccgca atcatcgacc ccaggccgcg taccgcagca
     3721 atggccggaa cgctttcttt ggcatcaatc aacgtgtttt tgagacgctg gcccagttga
     3781 ttcgcgcgtt cgcagagtga ttctttgtcg ataatattga gcaccgcgtg cgcggcagcc
     3841 accgccagcg ggttcccggc gtaggtgcca cccaacccgc ccggcgcggg cgcgtccata
     3901 atattcgcgt taccgaccac gcccgaaagc ggcatcccgc ccgcgaggct tttcgccatc
     3961 gtcattaagt ccagcttatc ggcgtaatga tccatggcaa acagtttacc ggtacgcgca
     4021 aagccgcttt gcacttcatc ggcaatcatc acaataccgt gctcgtcgca caggcggcga
     4081 atggcggcaa ccagctcttt tggcgcaacg ttgaaaccgc cctcgccctg caccggttcg
     4141 aaaataatgg ccgccacctg cttcgcttca atgtccgatt taaacaagca ttcgatggcg
     4201 tcgagggagt cctgtgttga aatgccgtgt aaatctgacg gataaggtac gtgatacacc
     4261 gaaccaggga acgggccgaa gccgattttg tacggcgcaa cttttccggt cagcgccatg
     4321 gtcatatatg tacgaccgtg gaagccgccg ctaaacgcaa tcacgccagg tcgtccggta
     4381 tgggcgcgag caattttcac cgcgttttcc accgcttccg cgccggtagt gaagaatgcg
     4441 gttttagcct gcccgctcac tggggcaagg gcgttaattt tctccgccag cgtgacgtag
     4501 ctttcgtacg gcacaatctg atacgccgtg tgggtaaact gttgcaattg ctgctccacc
     4561 gccgcgacca gatcagggtg gcgatgcccg gtattcagca ccgcaatgcc tgcggcgaaa
     4621 tcgatgtatt cgttgccctc tacgtccttc agcgtagcgt tttctgccga ctgggcgaag
     4681 aagttacaca tcacgccaac cccgcgtggg gtagcagaaa gacgacgctg atggaattca
     4741 ttgttgctca tgtttcacac cttttgactc ttcactgtta atcggaaatt aaacgcccag
     4801 acgatcgcgc aggctgtaat aagccgcgcc catcgcggta aatggcacgc gcagcgtgcg
     4861 cccgccgggg aacgggtaat gcggcagatt ggcgaaggca tcgaaacgct cggcgtcacc
     4921 gcgcagcagt tcagcaatca aacgcccggc gaggtgggta caggtgacgc cgtggccgct
     4981 gtagccctgc atgtaataga tgttggtatc gaggcgaccg aactgcggca tccgtgaaag
     5041 ggtcagcagg aagttgcccg tccagcgata gtcgattttg acgcccttca gctgcgggaa
     5101 ggttttcagc agtttcggca caacaagacg ctcaacgtca tccgggtcgc gcgcgccgta
     5161 gaccacgccg ccgccgtaca gcaaacggtt gtcggcggta agacggtagt aatcaagcag
     5221 ataattacag tcttccacac agtagttttt cgggatcagc gaacaggcta aatcttccga
     5281 cagccgttcg gtggtgatca cctgcgtgcc gcacggcatg ctgcgtttcg ccagttccgg
     5341 ctctacttta tcgcccagat acgcattccc ggcgacaatc acatacttcg ccgtcacctg
     5401 acctttggca gtgcgcacaa cggctggcgt ggtgtgctgg atctgcgtca cggcagaaag
     5461 ttcatacacg cgcccgccgt tgaggcggat ggcgtccgct tcgccaatgg cgaggtttag
     5521 cgggtgaata tgcccaccgc tgtgatccag cagcgcaccg gtatagcgat cgctggctac
     5581 ttcacggcga atggcgttgg cgtccagcaa ttccagctgt ttattgccgt agcgttccca
     5641 gttctctttc tgctcttcaa gtgtggcgag ctgtttatca ttcatcgcca caaacaggcc
     5701 gccggggcgg tagtcgcagt caatctgata acgtttgata cgttcgcgga tgatctcacc
     5761 accttcgaac atcatgctgc cgagcatagg ggcggtgtcc atgccgtagc ttttttcgat
     5821 cacgtcgatg tcgcggctgt aggagttcac aagctgcccg ccattgcgcc cgcttgcgcc
     5881 aaagccgatg cgtgaggctt cgagaaccac tacgtcaaag cccgcttccg ccagatgcag
     5941 cgcggaggag agcccggtat agccgccgcc aaccacgcaa acgtcgcagg tgattgactc
     6001 attcagggtg tcgaatggca cgtatttatt cgcactggcg gcgtaataac tgctggtatg
     6061 ttcggtcatt tcaggcctcc aggcttatcc agatggtttt cagttcggtg aatttttcaa
     6121 gggcatgcag ggatttgtcg cgaccgttgc cgctctgctt atagccgcca aacggcacgg
     6181 tcatatcgcc gtcgttgtag ttattgacga agacggaacc ggctttcagg cggcggctca
     6241 tacggtgcgc gcgggagagg tcgcgcatcc ataccgccgc gccaaggccg tactggctgt
     6301 cgttggcaag ctgtagcgcc tgttcttctg atgtgaaacg cgtgaccacc agcaccggac
     6361 cgaaaatctc ttcgcggctt aaggacgcat tcgggtctac atccacaaag atggtcgggc
     6421 cgatggcggc agccagcccg gcgttacggc catccagcag cagttgccct ttgccttcgc
     6481 cctcacgaat aaagctatgg accgagtcgg cgtgggcgca gtcgattaaa gtgcccatgg
     6541 tggttgcggg gtcaagcgga tggcccggct gccagttttg cgcctgctgt tttaacaggg
     6601 ctaagaattc atcggcgatg ctctcttcca gcaacaggcg tgttccggcg atgcacacct
     6661 gaccctggtt gtagaagatg cctgctgcgg tggagctcgc cgctttttgc agatccgaac
     6721 aatcggcgaa aacgatgttg gcgcttttgc cgcccgcttc cagccagacg cgtttcatgt
     6781 tgctgtcgcc cgcatctttc agcagctgtt tcccggtacg ggttgaaccg gtaaaggcaa
     6841 tggcgtcgat atcgttatga cgcgacagcg cctgccccgc ttcatgacca aaacccgtca
     6901 ccacgttcaa cacaccatcc ggcaagcctg cttctttcgc cagccccgcg agacgaatcg
     6961 cactgagcgg tgatttttca gacggtttta gaatcacgct gtttcccgcc gccagcgccg
     7021 ggccgagttt ccagcaagtc agcaacagcg ggaagttcca cggcacgatg gcggcaatca
     7081 cgccgaccgg ttcacgcacg atcatcgcca gctcatggct actggtggtc gccacttcgc
     7141 catacacttt gtcgatcgct tcggcgtacc agcgaatggc gcgcgccgcg ccgggaatat
     7201 catcacgcag actgtgacga atcggtttgc cggtgtcgag agtttccagc agtgccagct
     7261 cttcggcgtg ggcctccatt aaatcggcga gtttattcag taccgcttta cgtttagccg
     7321 gagaagagag tgaccagtcg ccgcgttcaa atacgccgcg tgctgcgctc accgcacggt
     7381 cgatatcgac gctcttgccg cgggcaattt tcgccagcgg tgcttgggtg accggatcaa
     7441 cggtttcaaa ggtttcattt tccgccgcag cagtatattc accgttaata aataagcggt
     7501 tttcaatggc gagacttaac gctttatcct gccagtaagc cagatgatga aaattcatta
     7561 tgactcctgt ttcacgtcta tcagatatat gcagtttgtg aacgtaaggg cgcagagatc
     7621 cccgggccgt atgcccgttt atttctggcg acattcttta tatacacttc atccttcaag
     7681 ccgcctctgc cttggctgcg ttcgcacccc cgaatcactt acctgagtaa gctcatcggg
     7741 attcgctcac ttgccgcctt gatgcaactt gaatgatttt gtgtatagat tgccgggcgc
     7801 attgcgctta cccggcttac agaacaaaaa gattaaaacg tggtgggcgt atgggcgctg
     7861 ataattcggc aaatacctgc cgacgtatta ctgaaactgt gcgggatgcc ggtattaatg
     7921 gcataacttt gacccgcgac gaggtggtaa tcctgaccat taatcgtcag aacaatttca
     7981 ccttccagta ctgtgcctat ttcctcaccc tgatgcttaa ttctttcccc agtggttgtg
     8041 cccggctggt acgtttcaaa gatcatcgcc agcgtgcgat tcgggttacc gttatgaacc
     8101 agcttcattg acacaccctg actgcccatc tcaattaagt cgtcctgatt aatgacgacc
     8161 tgcggctcat caggtttttc cggctcggaa aagaattccg agagtgacag accatacacc
     8221 ttcagcagct tttgcagcgt actgatggca gggctgactt tatcttgttc tatcgtactg
     8281 atagcactgt gagtcagccc ggagagttcg gcggcacgac gttgtgaaag cccctgctgc
     8341 tggcggattt ccgacaagcg ttttcctggc gccagtccct catcactcat atttgcattt
     8401 ccttaaactg tagtggtcag agtcgctgtt tttcagcgat atggtgctga caagcggtga
     8461 taaagccctc gaacaatata cgcgaaagcg cgtactcgct actgttccat tccgggtgcc
     8521 actgtacgcc cagcgcaaaa ggatgattga tgacgctaac cgcctcaact aagccatccg
     8581 gcgagcgagc ttcaacacgc aaccgtgggc taacgacctt cgccccttgt ccatgtagag
     8641 agtttaccca aaagttgcta cattcaggta acaacgcaga cagtaatccc ccctcttcaa
     8701 cctgaacttc atgcgacggt gcatattgct gttccaccgg cagttcggat cttcccgatg
     8761 ttccagcaat tcaggctgtt cgcacagctt gcgatgcaac gaaccaccgg ttgccaccac
     8821 cagttcttgt aaaccccggc agatggcgaa aatggggatg cgcctttcga gtgcggcatt
     8881 aattatcgcc atgctcagaa gatcacgccc gggatcggcg tcaggctcat cgccgttttc
     8941 accatatagg tgcggctgca cattgctggg actaccagga agataaatgc catcgagttt
     9001 cggcaaaagt tgttcaagta acgacggttc cgccagcgca tgtggtagcg caattggcaa
     9061 gccgcctgcg tggatgatgg cattcaggta cttttcttgc agagtctggg tcgcatgacc
     9121 cttaagcctg ttcctgcaca ttacgacacc gataaccgga ttgttcatta tattttccat
     9181 gctcaatctc acaaagtgga ctaaattatc gccattactg cgctttaaat gacctttatg
     9241 ttcaatattt ttttcaatct agcagtgggt tttcattttt gaaaactaaa tttaacattt
     9301 gacaaacatt tagtttgcat gcagattcga atgatggtca ttatatttta cgctttgata
     9361 acgagcggaa aacaaaccaa aggcgaagaa tcatggaaac caatatcgtt gaagtagaga
     9421 actttgttca gcagccagaa gagaggcggg gtagcgcctt tacgcaggaa gtgaaacgct
     9481 acctggagcg ctacccgaat acgcaatatg ttgatgtttt acttactgat ttgaatggtt
     9541 gcttccgtgg aaaacgtatc cctgtttcaa gcctgaagaa gttggagaaa gggtgttatt
     9601 tcccggcctc ggtgtttgca atggatattc tgggcaacgt agtagaagaa gcgggtctgg
     9661 gtcaggaaat gggcgagccg gatcgtactt gtgttcctgt tctcggttcc ttaacccctt
     9721 ctgccgccga tccagagttt atcggtcaga tgctcctgac catggtcgat gaagatggcg
     9781 ctccctttga cgttgagccg cggaacgttc ttaaccgcct gtggcagcag ctacgccagc
     9841 gcggattgtt cccggttgta gcggtagagc tggagttcta tttactggat cgtcagcgcg
     9901 acgctgaagg gtatctgcaa ccgccctgcg cgcccggcac cgatgaccgc aatacacaca
     9961 gccaggttta ctccgttgat aacctcaacc acttcgccga cgtgctcaat gatattgatg
    10021 aactggcgca gttacagtta attcccgccg acggtgcggt cgccgaagcc tcgccgggtc
    10081 agtttgaaat caacctttac cataccgata acgtgctgga agcctgcgat gatgcgctgg
    10141 cgctaaaact cctggtgcgt ctgatggcag aaaagcataa gatgcacgcc acttttatgg
    10201 cgaagccgta tgaagagcac gcgggcagcg ggatgcatat ccatatcagt atgcaaaata
    10261 atcgtggcga gaatgtgctt tctgacacag aaggcgaaga ttcgccgctg ctgaaaaaga
    10321 tgctcgccgg gatgattgac ctgatgccgt cgtcgatggc gttgctggca ccaaacgtga
    10381 actcgtatcg ccgcttccag ccgggaatgt atgtgccgac gcaggcgtcg tggggccata
    10441 acaaccgcac cgtcgccctg cgtattccgt gcggcgaccg tcataatcac cgcgtggaat
    10501 atcgcgtggc gggtgccgat gccaacccat atctggtgat ggcagcgatt tttgccggta
    10561 ttttgcatgg ccttgataac gagctgccgt tgcaggaaga agtcgaaggc aacgggctgg
    10621 aacaggaagg cttacccttc ccgattcgcc agagcgatgc cctgggtgag tttatcgaga
    10681 atgatcacct gcgccgctat ttaggcgaac ggttttgcca tgtgtatcac gcctgtaaaa
    10741 atgatgagct gttgcagttt gagcgcctca tcacagaaac agaaattgag tggatgttga
    10801 aaaacgcata gtaccccttg cggggttgtt tcatcaacct gagcggagcc aggcctgaca
    10861 tttgctggta atccagacat ttcccggatg tcgcgttatg gagcgcaggc ggcaacgggc
    10921 ttccgttaac gattaagact gtgacgagga aatgagatga tgccgatgat taaatccccg
    10981 catggcgagg gaggctgcgt atgcgcccct cctgctactg actggactcc gtcccctttg
    11041 cttcccttgc taaacaggtt tgatttcagg tcgacacgac cgcaaacctt attacgcagg
    11101 ggaggcagca attatggcta ttaattcacc actgaatatt gctgcgcaac ccggcaaaac
    11161 ccgtctgcga aaatcactga aattgtggca ggtggtgatg atgggtctgg cctatctcac
    11221 gccgatgacc gtatttgata ctttaggtat tgtctccggc attagcgacg gtcacgttcc
    11281 ggcgtcctat ttgctggcgc tggcgggcgt gctgtttacc gctatcagct acggcaaact
    11341 ggttcgccag tttccggagg ccgattcggc ctatacctac gcgcaaaagt cgattaaccc
    11401 gcacgtcgga tttatggtcg gctggtcatc gctgctggat tatctctttt tgccgatgat
    11461 caacgtcttg ttggcgaaaa tctatctctc cgccctcttc ccggaagtgc cgccgtgggt
    11521 gtgcgtagta accttcgtcg ccattttaac cgccgcgaat ctgaagagca tcaacctagt
    11581 cgctaacttc aataccctgt ttgtactggt gcaaatctcc atcatggtgg tgtttatctt
    11641 cctggtagtt cagggactgc ataaaggaga aggcgttggc accgtctggt cacttcagcc
    11701 gtttatcagc gagaacgcgc acctgatccc gattattacc ggggcgacga ttgtctgttt
    11761 ctccttcctc ggtttcgatg cggtgaccac gctttcggaa gagacgccgg acgccgcacg
    11821 cgtgatcccg aaagccatct tcctgacggc ggtctacggt ggcgttatct ttatcgcggc
    11881 gtcgttcttt atgcagctgt tctttcccga tatcagccgc tttaaagatc cggatgccgc
    11941 actgcctgaa attgcgctgt acgtcggcgg caagctcttc cagtcgattt tcctctgcac
    12001 cacgtttgtg aacacgttag cctctggcct ggcttcacat gccagcgtgt cgcgtctgct
    12061 gtatgtgatg gggcgtgaca atgtgtttcc ggagcgcgtg tttggctatg tgcacccaaa
    12121 atggcggact ccggcactca acgtcattat ggtcgggatt gtcgcgttgt cggcgctgtt
    12181 cttcgattta gttaccgcca cagcgttaat taacttcggt gctctggtgg cgtttacctt
    12241 cgtgaatctg tcggtgttta atcatttctg gcggcgtaaa ggaatgaata aaagctggaa
    12301 ggatcacttc cactatttgc tgatgccgct ggttggcgcg ctgacggtgg gtgtgctgtg
    12361 ggttaacctc gagtcaacgt cactgacact cggtctggta tgggcttcgt taggcggcgc
    12421 atatttatgg tatctgatcc gccgctatcg caaagtgccg ttgtatgatg gtgacagaac
    12481 gccggtgagt gaaacgtaat agtcggatgc gcggcacatt atcctgcctg agggtaatgc
    12541 accgcgccat taactataaa aagatgtatg acccggatca cgagtgctat catccgccct
    12601 tatgcttagc gcattaaccc caggggcaaa taatgaacca tgatatcccg ctaaaatatt
    12661 ttgatattgc cgatgagtac gcgaccgaat gcgcagagcc tgtcgcagac gctgaacgca
    12721 caccgctggc ccactacttc cagttactgc tcacccgttt gatgaacaat gaagagatca
    12781 gcgaagaagc ccaacatgaa atggctgctg aagcggggat taatcccgta cgcattgatg
    12841 agatcgcaga gtttttgaat caatggggta atgagtaatt atttaattgc agacgatcgg
    12901 tcagtatcgt tgtccggata aagcgttcac gccgcatccg gctaacaatg acacgcactg
    12961 cagcgtgctt taatgggttt ctcacgatcg taccgctctg ctcctcgcta agttgttctg
    13021 tgagttatag ttatagagaa agcacgggta cgaatgttga acagatggcg acgccacctg
    13081 ttcaacgacc aaccacacgg ccctcattac gccccctgaa cacaaacggt aatggcaaat
    13141 gtcattaaat attagtaaga tagcctcttt acataaaatc ccttaatatt atgcgccagg
    13201 tattatcgtc tcttttggtg attgctggac ttgtgagtgg tcaggcaatc gccgcgcctg
    13261 aatccccccc gcatgctgat atccgcgaca gcggttttgt ctattgcgtc agcgggcaag
    13321 tcaacacctt taacccatcc aaagcgagca gtgggttaat tgtcgatacc cttgccgccc
    13381 agttttatga tcgactgctg gatgtcgatc cctataccta tcgcctgatg ccggaacttg
    13441 ccgaaagctg ggaagtactc gacaacggcg cgacctatcg cttccacctg cgtcgcgatg
    13501 ttccgtttca aaaaaccgac tggtttactc ccactcgtaa aatgaatgcc gacgatgtgg
    13561 tgtttacctt ccagcgaatt tttgaccgca acaacccgtg gcataacgtc aacggcagca
    13621 acttccccta cttcgacagc ctgcaatttg ccgataacgt gaaaagcgtc cgcaaactgg
    13681 ataatcatac cgttgagttc cgactcgccc agccggatgc ttcttttttg tggcacctcg
    13741 caacccatta tgcttcggtc atgtcggcag aatatgcccg gaagttagag aaagaagatc
    13801 gccaggagca actcgaccgt caaccggtcg gcaccggtcc gtatcagttg tcggaatacc
    13861 gcgccgggca atttattcgc ctacaacgtc atgatgactt ctggcgcggt aaaccgttaa
    13921 tgccgcaggt agtggtggat ttaggctccg gcggcaccgg acgtctgtcg aaactcctga
    13981 ccggggaatg cgacgttctg gcctggcctg ctgccagcca gctatccatt ttgcgtgacg
    14041 acccgcgctt gcgtttaacg ctgcgtcctg ggatgaacgt cgcctatctg gcatttaaca
    14101 ccgccaaacc gccgctaaat aatcccgctg tccgccatgc actggcactg gcgattaata
    14161 accagcgcct gatgcaatcc atctattatg gtacggctga aacggcggcc tctattttac
    14221 cgcgcgcctc gtgggcctat gacaacgagg ctaaaattac tgaatacaat ccggcgaaat
    14281 cgcgcgaaca gttgaaggcg ttggggctgg aaaacttaac gctgaaactg tgggtgccca
    14341 cacgttcgca ggcgtggaac cccagtccac tgaaaactgc cgaactgatt caggcggata
    14401 tggcgcaggt tggcgtaaaa gtggtgattg tgccggtaga aggtcgcttt caggaggcgc
    14461 ggttgatgga tatgagccat gatctgacgt tatccggttg ggcgacggac agtaacgacc
    14521 cggacagttt cttccgtcct ttactgagct gtgcggcaat tcattcacag accaacctcg
    14581 cccactggtg cgatccgaaa ttcgacagcg tgttgcgtaa ggcgctctcc tcgcagcagc
    14641 tggcggcgcg tattgaagcc tatgacgaag cgcagagtat tctggcgcag gaattgccca
    14701 ttttgccgct ggcgtcgtca ttgcgtttgc aggcctatcg gtacgatatc aaaggtctgg
    14761 tacttagccc gtttggtaac gcctcctttg ctggggtgta tcgcgagaaa caggatgagg
    14821 tgaaaaaacc atgattatct tcaccttacg ccgcattttg ttattgattg tcaccttgtt
    14881 cctgctgacc ttcgttggct tcagcttgag ctatttcacc cctcatgcgc cgttacaagg
    14941 cgcgtcactg tggaatgcct gggtgttctg gtttaacggc ctgatccact gggattttgg
    15001 tgtttccagc attaacggtc aaccgattgc cgaacagtta aaagaggtct tcccggcgac
    15061 gatggaactg tgcatcctcg ccttcggttt tgcgctgatt gttggcatcc ccgtggggat
    15121 gattgccggg attacgcgcc ataagtggca ggataacttg atcaacgcca tcgccttact
    15181 gggcttttca atcccggtgt tctggctggc gcttctgttg acgctgtttt gttcactcac
    15241 gctaggttgg ttgcccgttt cagggcgttt cgatctgctc tacgaagtga aaccgattac
    15301 cggttttgcg ttgattgatg cctggctttc ggactcacca tggcgggatg aaatgatcat
    15361 gagcgcaatc cgccatatga tattgcccgt gatcaccctg tcggttgcgc caacaactga
    15421 agtgatccgc ctgatgcgta tcagcactat cgaagtgtat gaccagaact atgtaaaagc
    15481 ggcggcgacc cgcggtttgt cgcgctttac tattttgcgt cgccacgttc tgcataacgc
    15541 gttaccgccg gttattcctc gcctgggctt acagttttcc accatgctga cgctggcgat
    15601 gatcaccgaa atggttttta gctggccggg tttagggcgc tggttaatta acgccatccg
    15661 ccagcaggat tacgcagcca tttccgccgg agtgatggtg tgtggctcac tggtcattat
    15721 tgttaacgtg atttctgata ttttgggtgc catggctaac cctctgaaac ataaggaatg
    15781 gtatgcctta cgatagcgta tacagcgaaa agcgcccgcc gggcacgctg cgtaccgcct
    15841 ggcgcaaatt ttatagtgac gcctctgcga tggtcggcct gtacggctgc gcggggctgg
    15901 ctgtactgtg tatttttggc ggctggtttg cgccttacgg catcgaccag caatttctcg
    15961 gttatcaatt attgccgcca tcatggtcgc gctatggcga agtttctttc ttcctgggga
    16021 ctgacgacct cggacgcgat gttttaagcc gtttactgag cggagctgcg ccaaccgtgg
    16081 gtggcgcatt tgtggtgacg cttgccgcga cgatctgtgg cctggtactg ggcaccttcg
    16141 ccggggcgac acacggcctc cgctcagcgg tgcttaacca tattctggat accttactgg
    16201 cgatcccttc gctgctgttg gcaattatcg ttgtagcgtt tgccggaccg agtttgtccc
    16261 acgctatgtt tgctgtctgg ctggcattgc tgccgcgtat ggtacgttcg atttacagca
    16321 tggtgcatga cgaactggaa aaagagtacg ttatcgccgc ccgtctggat ggcgcatcaa
    16381 cgctgaatat tctctggttt gctgtgatgc caaacatcac cgccgggctg gtcaccgaga
    16441 tcacccgcgc actgtcgatg gcaattctcg atatcgccgc gctgggcttt ctcgatctcg
    16501 gcgcacaact cccctcgcct gaatggggag cgatgctcgg tgatgcgctg gaactgattt
    16561 atgtcgcccc gtggactgtc atgctgccag gtgcggcaat tatgattagc gtgttgttgg
    16621 ttaacctcct tggcgatggc gttcgtcgtg cgattattgc gggggtggaa taatgccatt
    16681 actcgatatt cgtaacctga ccattgaatt taaaaccggt gatgagtggg ttaaagccgt
    16741 cgaccgggta agtatgacct taaccgaagg tgaaatccgc ggtcttgttg gtgaatccgg
    16801 ttccggcaag agtttgattg cgaaagcgat ttgtggggtg aataaagata actggcgtgt
    16861 tactgctgac cgtatgcgtt ttgatgatat cgatttgctg cgtctctccg cacgcgaacg
    16921 gcgcaaactg gttggccata acgtgtcgat gattttccag gaaccgcagt cgtgtcttga
    16981 cccttcagaa cgtgtgggtc gccagttgat gcaaaacatc ccagcctgga cctataaagg
    17041 ccgttggtgg cagcgttttg gctggcgcaa acgccgtgcc attgaactgc tgcaccgcgt
    17101 ggggattaaa gatcacaaag atgcgatgcg cagttttccc tatgagttga ccgaaggtga
    17161 atgtcagaaa gtgatgatag ccattgcact ggcgaatcaa ccgcgtctgc tgattgctga
    17221 cgaaccgacc aactcaatgg agccaacaac ccaggcgcaa atctttcgcc tgctgacgcg
    17281 tctcaaccaa aacagcaata ccactatttt gcttatcagc catgacttac aaatgcttag
    17341 ccaatgggcg gataaaatta acgtgcttta ctgcggtcaa acagtggaaa ccgcgccgag
    17401 taaggagttg gtgacgatgc cacatcatcc ttatacccag gcgctgatcc gcgcgatacc
    17461 agacttcggc agcgcgatgc cgcataaaag tcgcctcaat actctgcccg gcgctatccc
    17521 actgctggaa cagttaccga ttggttgtcg tctggggcca cgttgcccgt atgcacaacg
    17581 agaatgcatt gtgacgccac gtttgacggg ggcgaaaaat catctctatg cctgtcattt
    17641 cccgctgaac atggagaaag agtgagatga tcgaaacgct gcttgaagtg cgtaatttaa
    17701 gtaaaacgtt ccgctaccgg accggctggt ttcgccgtca gaccgtagaa gcggtaaaac
    17761 ccttgagctt tacgctacgt gaaggccaga cactggcgat tattggcgag aatggttcgg
    17821 gtaaatccac gctggcaaaa atgctggcgg gaatgataga gcctaccagc ggcgagttat
    17881 tgattgacga tcatccactg cattttggcg attattcctt ccgcagtcag cgtattcgca
    17941 tgatttttca ggatccttcg acctcgttga atccccgtca acgtatctcg caaattctgg
    18001 attttccact gcgcctgaac accgacctgg aaccggaaca gcgtcgcaaa cagattattg
    18061 aaacgatgcg tatggttggg ctgctaccgg atcacgtcag ttactatccg catatgttgg
    18121 cacccggaca aaaacagcgt ctgggtctgg cgcgcgcgct gatattgcgc ccaaaagtca
    18181 ttattgccga tgaagcactc gcttcactgg atatgtcgat gcgttcgcag ttgattaatc
    18241 tgatgctgga gttacaggaa aaacagggca tttcgtatat ttatgttacc cagcatatcg
    18301 gaatgatgaa gcacattagc gaccaggtgc tggtgatgca tcagggcgag gttgtcgagc
    18361 gaggcagcac cgcggatgtg ctggcatcgc cgctgcatga actcaccaaa cggctgattg
    18421 ccgggcactt tggcgaagca ttgacagcgg atgcgtggcg taaagatcgc taattttctg
    18481 aatcctcctt ccagattatc cacctcattc tgacaagaga ttaaatcttg tcagaatgag
    18541 gtgatggata aaataaaatc aaatgcgcgt gatttaagac gcaatctcac tttgcaggaa
    18601 cgaaagctct ggcgatatct tcgcagccga cgttttggtg atttcaaatt tcgccgtcaa
    18661 catccggtgg ggagctacat tctcgatttt gcttgctgct cggcgcgcgt agtcgttgag
    18721 ctggatggtg ggcagcatga tttggcagtt gcctatgata ccaggcgcac tagctggctt
    18781 gagtcgcagg gctggaccgt gctgcgtttc tggaataacg agattgattg taatgaggag
    18841 gcggtgctgg agattattct gcaggaactg aaccgccgat caccctcacc ctgaaagggc
    18901 gagggggccg accgagccga atagctgttg tggtgaaaac atggagacag tgctggagaa
    18961 tattcggcaa ggtctgaacc atcccagcca tcgccataaa agggttaggg gctgtatgag
    19021 cctgtttgtt gctggggtaa caatatttgc acaatatggt cccctcgccc ctctggggag
    19081 agggttagtg taaggggaaa agcgcccacc ctgccgcagc ctgctccggt cggacctggc
    19141 aactatagct actcacagcc aggttgatta taataaccat ttatctgttc gtactgttta
    19201 ctaaaacgac gaatcgcctg attttcaggc acaacaagca tcaacaataa ggattaaagc
    19261 tatgggtttt ctttccggta agcgcattct ggtaaccggt gttgccagca aactatccat
    19321 cgcctacggt atcgctcagg cgatgcaccg cgaaggagct gaactggcat tcacctacca
    19381 gaacgacaaa ctgaaaggcc gcgtagaaga atttgccgct caattgggtt ctgacatcgt
    19441 tctgcagtgc gatgttgcag aagatgccag catcgacacc atgttcgctg aactggggaa
    19501 agtttggccg aaatttgacg gtttcgtaca ctctattggt tttgcacctg gcgatcagct
    19561 ggatggtgac tatgttaacg ccgttacccg tgaaggcttc aaaattgccc acgacatcag
    19621 ctcctacagc ttcgttgcaa tggcaaaagc ttgccgctcc atgctgaatc cgggttctgc
    19681 cctgctgacc ctttcctacc ttggcgctga gcgcgctatc ccgaactaca acgttatggg
    19741 tctggcaaaa gcgtctctgg aagcgaacgt gcgctatatg gcgaacgcga tgggtccgga
    19801 aggtgtgcgt gttaacgcca tctctgctgg tccgatccgt actctggcgg cttccggtat
    19861 caaagacttc cgcaaaatgc tggctcattg cgaagccgtt accccgattc gccgtaccgt
    19921 tactattgaa gatgtgggta actccgcggc attcctgtgc tccgctctct ctgccggtat
    19981 ctccggtgaa gtggtccacg ttgacggcgg tttcagcatc gctgcaatga acgaactcga
    20041 attgaaataa tcattctgtt ggtaaatatt gggcggcgtt ctgccgcccg ttatctctgt
    20101 tatacctttc tgatatttgt tatcgccgat ccgtctttct ccccttcccg ccttgcgtca
    20161 ggataacgat ttcctttacg accaaggagc gcccatggaa caacgccaca tcaccggcaa
    20221 aagccactgg tatcatgaaa cgcaatccag tactgcggag tatgacgttc tgcctctggt
    20281 cccggaagcc gcaaaggtca gcgatccctt tctgctcgac gtgatccttg atgaagaaac
    20341 gctggctccc ttcctttcat ggctggtccc tgcgcgcgtt cttgcagtgg aattgttccc
    20401 tgaccagctt accgtgaccc gttcacagac cttcaccgct tatgaacgct tgtctacggc
    20461 cctgacggtt gctcaggttt gcggcgtcca gcggttatgt aactactatt cggcgcgact
    20521 tacgccgctc cccgggcctg attcctctag ggaaagcaat cataggttgg cacaaatcac
    20581 gcaatatgcc cgccaactgg ctagctcgcc ttctattatc gacaaccgat cgcgccagca
    20641 tctgaatgac gtcgatctta ctgcctggga ctgtgtgatc attaaccaaa tcattggttt
    20701 tattggcttt caggcgcgga ccattgcgac atttcaggct tatctcgggc acccggtacg
    20761 ctggttaccc ggtctggaaa tacaaaacta cgccgacgcg tcactgtttg ctgatgaatc
    20821 aatacgctgg cgaagcagct atgaggtgga aaaactacct gaagagtaca caaaaagttc
    20881 aacagcagaa ctttgccaac tggccgaaac actctctctc caccctattt cactttccct
    20941 tctcgaaagg ttgttaaaca gtacacgggt taatacacag ccggataata agcttgcggc
    21001 gttgttatgc gcgcggataa atggcagtcc tgcttgtttt gccgcctgta tggattcatc
    21061 aaatgaatat aaaaaaatca gcccccttct gcgcaagggc gaaaatgaaa ttaaccaatg
    21121 ggctgaccgt cattctgttg agcacgctac cgttcaggcg atacaatggc tgacccgagc
    21181 acccgatcgc tttagcaccg cccagttcag ccctttactc gaacacgaac aatcatcaac
    21241 gcagattatt aatctgctgg tatggagcgg gctgtgtggc tggataaatc gcttaaaaat
    21301 cgcgttgggt gagacatatt aaccttgccg cgtcagacag attcgcgtaa aactgtcagc
    21361 cgctctaatg gccaccaaaa tagacaatta tgtttcagga caacccgctg ctagcgcagc
    21421 ttaaacagca actgcattcc cagacgccac gcgctgaagg ggtggtaaaa gccacagaaa
    21481 aaggctttgg cttcctggaa gtcgacgcgc aaaaaagtta tttcattccg ccgccgcaga
    21541 tgaaaaaagt catgcatggc gaccgaatta tcgcggtgat ccacagtgaa aaagaacgtg
    21601 aatccgcaga gccagaagaa ctggttgaac cgttcctgac tcgtttcgtg ggtaaagttc
    21661 agggcaaaaa tgaccgtctg gccatcgttc ctgatcatcc actcttaaaa gacgccattc
    21721 cttgccgcgc agcccgtggc ctgaaccacg agtttaaaga aggcgactgg gcggttgccg
    21781 aaatgcgccg tcatccgctg aaaggcgatc gttctttcta tgctgaattg acacaataca
    21841 tcacttttgg tgacgaccac tttgtaccgt ggtgggttac acttgcgcgc cataatctgg
    21901 aaaaagaagc accagacggc gtcgctaccg aaatgctcga tgaaggtctg gttcgtgaag
    21961 atctgaccgc gctggatttt gtcaccatcg acagtgccag cacagaagat atggatgacg
    22021 cccttttcgc taaggcgttg ccggatgaca aacttcagct gattgtggcg attgccgatc
    22081 caaccgcgtg gattgctgaa ggcagcaagc tggacaaagc cgcgaaaatt cgcgcattca
    22141 ccaactatct gcctggcttc aacatcccta tgctgcctcg cgagctttct gacgatctct
    22201 gctcactgcg cgccaatgaa gtccgcccgg tactggcatg ccgcatgacg ctctccgctg
    22261 atggcgccat tgaagataat atcgaattct ttgccgccac catcgaatcc aaagcaaagc
    22321 tggtgtatga ccaggtttct gactggctgg aaaataccgg tgactggcag cctgaaagtg
    22381 aagcaattgc cgaacaagtc cgtttgctag cgcaaatttg ccaacgccgc ggcgagtggc
    22441 gtcataacca cgcactggtg tttaaagatc gcccggatta ccgctttatt ctcggtgaaa
    22501 aaggtgaagt gctggatatc gtcgccgagc ctcgtcgcat tgccaaccgt atcgtcgaag
    22561 aagcgatgat tgccgctaac atttgtgcgg cccgcgtact gcgcgataag ctcggttttg
    22621 gcatctataa cgtgcatatg ggctttgatc cggcgaatgc cgacgcgctg gcagcgttgc
    22681 tgaaaacgca cggtctgcat gtcgatgccg aagaagtgct cacgctggac ggtttctgca
    22741 aactgcgtcg tgaactggac gcgcaaccaa ctggtttcct cgacagccgc attcgtcgct
    22801 tccagtcatt tgctgaaatt agcactgaac ccggtcctca ctttggcctc ggtctggaag
    22861 catacgccac ctggacttcg ccgatccgta aatatggcga catgatcaac caccgtctgc
    22921 tgaaagcggt tatcaaaggc gaaactgcga cgcgcccaca ggatgaaatc actgtccaaa
    22981 tggccgagcg tcgccgtctc aaccggatgg cagaacgtga tgttggtgac tggttatacg
    23041 cacgcttcct gaaagacaaa gccgggaccg acacccgttt cgcagcggaa attgtcgata
    23101 tcagccgtgg cggcatgcgt gtgcgtttgg ttgataacgg cgctatcgcc tttattccgg
    23161 cacctttctt acacgctatg cgcgatgaac tggtttgcag ccaggaaaac ggcactgtac
    23221 aaattaaagg tgaaacggtt tacaaagtaa ctgacgttat tgacgtcacc attgccgaag
    23281 tccgcatgga aacccgcagc attattgcgc gcccggtcgc gtaatctcct ttcacggcct
    23341 attcctcatg gatgggccgt ttatttcccc gctctacctt cgttatatcc aggcagattt
    23401 tttaactgac tttcgtttga aaactggcgt ttttccaaaa ctggattaca aataaatata
    23461 taaaaaaaaa caatgcgttt agccgccgtt aatttcatgt aagtca
//
LOCUS       DADMHM010000046        23285 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.047, whole genome shotgun sequence.
ACCESSION   DADMHM010000046 DADMHM010000000
VERSION     DADMHM010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 23285)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23285)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23285
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.047"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..674)
                     /locus_tag="JN125_001597"
     CDS             complement(<1..674)
                     /locus_tag="JN125_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate transporter"
                     /protein_id="HAY8871418.1"
                     /translation="MRNKLSFDLQLSARKAAIAERIAVHKIARSKVSVFLMAMSAGVF
                     MAIGFTFYLSVIADAPSSQALTHLVGGLCFTLGFILLAVCGTSLFTSSVMTVMAKSRG
                     VISWRTWLINALLVACGNLAGIACFSLLIWFSGLVMSENAMWGVAVLHCAEGKMHHTF
                     TESVSLGIMCNLMVCLALWMSYCGRSLCDKIVAMILPITLFVASGFEHCIANLFVIPF
                     AIAIRH"
     gene            complement(696..2708)
                     /locus_tag="JN125_001598"
                     /pseudo
     CDS             complement(696..2708)
                     /locus_tag="JN125_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416986.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent Fis family transcriptional
                     regulator"
     gene            complement(2738..3151)
                     /gene="hyfJ"
                     /locus_tag="JN125_001599"
     CDS             complement(2738..3151)
                     /gene="hyfJ"
                     /locus_tag="JN125_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416985.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 assembly chaperone HyfJ"
                     /protein_id="HAY8871419.1"
                     /translation="MTEECGEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGV
                     IDCLNVAFRCPLTENEDWLAQVEEEQARRKMLGVMTFGEIVIDASHTALLTRAFALLA
                     DDATSVWQARSIQFIHLLDEIVQEPAIYLMARKIA"
     gene            complement(3144..3902)
                     /gene="hyfI"
                     /locus_tag="JN125_001600"
     CDS             complement(3144..3902)
                     /gene="hyfI"
                     /locus_tag="JN125_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 catalytic subunit HyfI"
                     /protein_id="HAY8871420.1"
                     /translation="MSPVLTQHVSQPITLDEQTQKMKRHLLQDIRRSAYVYRVDCGGC
                     NACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH
                     KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQ
                     QKIHAVDYRDPTGVTMQPLWPQIPPSQRIAIEREARRLAGYRLGREICDRLLRHLSDD
                     PTGNRVNTWLRDADDPRLNSIVQQLFRVLRGLHD"
     gene            complement(3899..4438)
                     /gene="hyfH"
                     /locus_tag="JN125_001601"
     CDS             complement(3899..4438)
                     /gene="hyfH"
                     /locus_tag="JN125_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit H"
                     /protein_id="HAY8871421.1"
                     /translation="MLKLLKTIMRAGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG
                     ACTCPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKA
                     DLYTRATFHLQRCSRCERPFAPQKTVALAAELLAQQQNAPQNREMLRAQASVCPECKQ
                     RATLINDDTDVPLVAKEQL"
     gene            complement(4448..6163)
                     /gene="hyfG"
                     /locus_tag="JN125_001602"
     CDS             complement(4448..6163)
                     /gene="hyfG"
                     /locus_tag="JN125_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 catalytic subunit HyfG"
                     /protein_id="HAY8871422.1"
                     /translation="MNVNSSSNRGEAILAALKTQFPGAVLDEERQTPEQVTITVKINL
                     LPDVVHYLYYQHDGWLPVLFGNDERTLNGHYAVYYALSMEGAEKCWIVVKALVDADSR
                     EFPSVTPRVPAAVWGEREIRDMYGLIPVGLPDQRRLVLPDDWPEDMHPLRKDAMDYRL
                     RPEPTTDSETYAFINEGNSDARVIPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYV
                     HRGMEKLAETRMGYNEVTFLSDRVCGICGFAHSVAYTNSVENALGIEVPQRAHTIRSI
                     LLEVERLHSHLLNLGLSCHFVGFDTGFMQFFRVREKSMTMAELLTGSRKTYGLNLIGG
                     VRRDILKEQRLQTLKLVREMRADVSELVEMLLATPNMEQRTQDIGILDRQIARDYSPV
                     GPLIRGSGFARDLRFDHPYADYGNIPKTLFTFTGGDVFSRVMVRVKETFDSLAMLEFA
                     LDNMLDTPLLTEGFSYKPHAFALGFVEAPRGEDVHWSMLGDNQKLFRWRCRAATYANW
                     PVLRYMLRGNTVSDAPLIIGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRN
                     RSPLK"
     gene            complement(6153..7733)
                     /gene="hyfF"
                     /locus_tag="JN125_001603"
     CDS             complement(6153..7733)
                     /gene="hyfF"
                     /locus_tag="JN125_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit F"
                     /protein_id="HAY8871423.1"
                     /translation="MSYSVMFALLLLTPLLFSLLCFACRKRGLSATCTVTVLHSLGIT
                     LLLILALWVVQTAADAGEIFAAGLWLHIDGLGGLFLAILGVIGFLTGVYSIGYMRHEV
                     AHGELSPVTLCDYYGFFHLFLFTMLLVVTSNNLIVMWAAIEATTLSSAFLVGIYGQRS
                     SLESAWKYIIICTVGVAFGLFGTVLVYANAASVMPQAEMAIFWSEILKQSSLLDPTLM
                     LLAFVFVLIGFGTKTGLFPMHAWLPDAHSEAPSPVSALLSAVLLNCALLVLIRYYIII
                     CQAIGSDFPNRLLLIFGMLSVAVAAFFILVQRDIKRLLAYSSVENMGLVAVALGIGGP
                     LGIFAALLHTLNHSLAKTLLFCGSGNVLLKYGTRDLNVVCGMLKIMPFTAVLFGGGAL
                     ALAGMPPFNIFLSEFMTVTAGLARNHLLIIVLLLLLLTLVLAGLVRMAARVLMAKPPQ
                     AVNRGDLGWLTTSPMVILLVMMLAMGTHIPQPVIRILAGASTIVLSGTHDLPAQRSTW
                     HDFLPSGTASVSEKHSER"
     gene            complement(7738..8388)
                     /gene="hyfE"
                     /locus_tag="JN125_001604"
     CDS             complement(7738..8388)
                     /gene="hyfE"
                     /locus_tag="JN125_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 membrane subunit"
                     /protein_id="HAY8871424.1"
                     /translation="MIGSMIVNNLAGLMMLTSLFVISVKSYRLSCGLYACQSLVLVSI
                     FATLSCLFAAEQLLIWSASAFITKVLLVPLIMTYAARNIPQNIPEKALFGPAMMALLA
                     ALIVLLCAFVVQPVKLPMATGLKPALAVALGHFLLGLLCIVSQRNILRQIFGYCLMEN
                     GSHLVLALLAWRAPELVEIGIATDAIFAVIVMVLLARKIWRTHGTLDVNNLTALKG"
     gene            complement(8400..9507)
                     /locus_tag="JN125_001605"
                     /pseudo
     CDS             complement(8400..9507)
                     /locus_tag="JN125_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001442177.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit D"
     gene            complement(9519..9629)
                     /locus_tag="JN125_001606"
     CDS             complement(9519..9629)
                     /locus_tag="JN125_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000429114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoin racemase"
                     /protein_id="HAY8871425.1"
                     /translation="MENLALTTLMLPFIGALVVSFSPQRRAAEWGFCSPH"
     gene            complement(9646..10590)
                     /gene="hyfC"
                     /locus_tag="JN125_001607"
     CDS             complement(9646..10590)
                     /gene="hyfC"
                     /locus_tag="JN125_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311372.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit HyfC"
                     /protein_id="HAY8871426.1"
                     /translation="MRQTLCDEYLVIFALAQAVILLLTPLFTGISQQIRARMHSRRGP
                     GIWQDYREIHKLFKRQEVAPISSGLMFRLMPWVLISSMLVLAMALPLFITVSPFAGGG
                     DLITLIYLLALFRFFFALSGLDTGSPFAGVGASRELTLGILVEPMLILSLLVLALIAG
                     STHIEMISNTLATGWNSPLTTVLALLACGFACFIEMGKIPFDVAEAEQELQEGPLTEY
                     SGAGLALAKWGLGLKQVVMAALFVALFLPFGRAQELSLACLLTSLVVTLLKVLLIFVL
                     ASIAENTLARGRFLLIHHVTWLGFSLAALAWVFWLTGL"
     gene            complement(10601..12619)
                     /gene="hyfB"
                     /locus_tag="JN125_001608"
                     /pseudo
     CDS             complement(10601..12619)
                     /gene="hyfB"
                     /locus_tag="JN125_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311371.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit B"
     gene            complement(12619..13236)
                     /gene="hyfA"
                     /locus_tag="JN125_001609"
     CDS             complement(12619..13236)
                     /gene="hyfA"
                     /locus_tag="JN125_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 4 subunit HyfA"
                     /protein_id="HAY8871427.1"
                     /translation="MNRFVVAEPLWCTGCNTCLATCSDVHKTQGLQQHPRLALAKTST
                     ITAPVVCHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAISASGS
                     RPVNAPAQYVFQADGSLKDGEENAPTQHALLRWEPGVQTVAVKCDLCNFLPEGPACVR
                     ACPNQALRLITDDSLQRQMKEKQRLAASWFANGGEDPLSLTQEQH"
     gene            complement(13489..13959)
                     /gene="bcp"
                     /locus_tag="JN125_001610"
     CDS             complement(13489..13959)
                     /gene="bcp"
                     /locus_tag="JN125_001610"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HAY8871428.1"
                     /translation="MNPLKAGDIAPKFSLPDQDGEQVNLTDFQGQRVLVYFYPKAMTP
                     GCTVQACGLRDNMDELKKAGVDVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVCEQ
                     FGVWGEKSFMGKTYDGIHRISFLIDADGKIEHVFDDFKTSNHHDVVLNWLKEHA"
     gene            complement(13959..14531)
                     /locus_tag="JN125_001611"
     CDS             complement(13959..14531)
                     /locus_tag="JN125_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system transcriptional
                     repressor"
                     /protein_id="HAY8871429.1"
                     /translation="MTLSSQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAML
                     GEEFTFIMLLSGSWNAITLIESTLPLKGAELDLLIVMKRTTARPRPPMPASVWVQVDV
                     ADSPHLIERFTALFDAHHMNIAELVSRTQPAENERAAQLHIQITAHSPASADAANIEQ
                     AFKALCTELNAQGSINVVNYSQHDEQDGVK"
     gene            14677..15555
                     /gene="dapA"
                     /locus_tag="JN125_001612"
     CDS             14677..15555
                     /gene="dapA"
                     /locus_tag="JN125_001612"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001311023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HAY8871430.1"
                     /translation="MFTGSIVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGT
                     TGESATLNHDEHADVVMMTLELADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLT
                     VTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDLLPETVGRLAKVKNIIGI
                     KEATGNLTRVNQIKELVSDDFVLLSGDDASALDFMQLGGHGVISVTANVAARDMAQMC
                     KLAAEGHFAEARVINQRLMPLHNKLFVEPNPIPVKWACKELGLVATDTLRLPMTPITD
                     SGRETVRAALKHAGLL"
     gene            15572..16606
                     /gene="bamC"
                     /locus_tag="JN125_001613"
     CDS             15572..16606
                     /gene="bamC"
                     /locus_tag="JN125_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708316.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamC"
                     /protein_id="HAY8871431.1"
                     /translation="MAYSVQKSRLAKVAGVSLILLLAACSSDSRYKRQVSGDEAYLEA
                     APLAELHAPAGMILPVTSGDYAIPVTNGSGAVGKALDIRPPAQPLALVSGVRTQFTGD
                     TASLLVENGRGNTLWPQVVCVLQAKNYTITQRDDAGQTLTIDWVQWNRLDEDEQYRGR
                     YQISVKPQGYQQAVTVKLLNLEQAGKPVADAASMQRYSTEMMNVISAGLDKSASDAAN
                     AAQNRASTTMDVQSAADDTGLPMLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNM
                     AVTYKPLSDSDWQELGASDPGLASGDYKLQVGDLDNRSSLQFIDPKGHTLTQSQNDAL
                     VAVFQAAFSK"
     gene            16819..17532
                     /gene="purC"
                     /locus_tag="JN125_001614"
     CDS             16819..17532
                     /gene="purC"
                     /locus_tag="JN125_001614"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HAY8871432.1"
                     /translation="MQKQAELYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFD
                     RKGMVNNKFNYFIMSKLAEAGIPTQMERLLSDTECLVKKLDMVPVECVVRNRAAGSLV
                     KRLGIEEGIELNPPLFDLFLKNDAMHDPMVNESYCETFGWVSKENLARMKELTYKAND
                     VLKKLFDDAGLILVDFKLEFGLYKGEVVLGDEFSPDGSRLWDKETLEKMDKDRFRQSL
                     GGLIEAYEAVARRLGVQLD"
     gene            17700..18563
                     /locus_tag="JN125_001615"
     CDS             17700..18563
                     /locus_tag="JN125_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="neutral zinc metallopeptidase"
                     /protein_id="HAY8871433.1"
                     /translation="MRWQGRRESDNVEDRRNSSGGPSMGGPGFRLPSGKGGLILLIVV
                     LVAGYYGVDLTGLMTGQPVSQQQSTRSISPNEDEAAKFTSVILATTEDTWGQQFEKMG
                     KTYQQPKLVMYRGMTRTGCGAGQSIMGPFYCPADGTVYIDLSFYDDMKDKLGADGDFA
                     QGYVIAHEVGHHVQKLLGIEPKVRQLQQNATQAEVNRLSVRMELQADCFAGVWGHNMQ
                     QQGVLETGDLEEALNAAQAIGDDRLQQQSQGRVVPDSFTHGTSQQRYSWFKRGFDSGD
                     PAQCNTFGKSI"
     gene            18578..20593
                     /locus_tag="JN125_001616"
     CDS             18578..20593
                     /locus_tag="JN125_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(Met) cytidine acetyltransferase"
                     /protein_id="HAY8871434.1"
                     /translation="MAELTALYTLTAQMKREGIRRLLVLSGEEGWCFDHALKLRDALL
                     GDWLWISPQPDAENHCSPSVLQTLLGREFRHAVFDARHGFDAAAFAALSGTLKAGSWL
                     VLLLPVWEEWENQPDADSLRWSDCPDPIATPHFVQHLKRVLTADNDAILWRQNQPFSL
                     AHFTPRTDWHPATGAPQPEQQQLLQQLLTMLPGVAAVTAARGRGKSALAGQLISRIAG
                     SAIVTAPAKAATDVLAQFAGEKFRFIAPDALLASDEQADWLVVDEAAAIPAPLLHQLV
                     SRFPRTLLTTTVQGYEGTGRGFLLKFCARFPHLHRFELQQPIRWAQGCPLEKMVSEAL
                     VFDDENFTHTPQGNIVISAFEQTLWRSEPETPLKVYQLLSGAHYRTSPLDLRRMMDAP
                     GQYFLQAAGENEIAGALWLVDEGGLSQQLSQAVWAGFRRPRGNLVAQSLAAHGSNPLA
                     ATLRGRRVSRIAVHPARQREGVGQQLIASALQYTQDLDYLSVSFGYTGELWRFWQRCG
                     FVLVRMGNHREASSGCYTAMALLPMSDAGKQLAEREHYRLRRDAQALAQWNGETLPVD
                     PLNDIVLSDDDWLELAGFAFAHRPLLTSLGCLLRLLQTSELALPALRGRLQKNASDAQ
                     LCTTLKLAGRKMLLVRQREEAAHALFALNDVRTERLRDRITQWQFFH"
     gene            20667..21365
                     /gene="ypfH"
                     /locus_tag="JN125_001617"
     CDS             20667..21365
                     /gene="ypfH"
                     /locus_tag="JN125_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311362.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HAY8871435.1"
                     /translation="MKHDHFVVQSPDKPVQQLLLLFHGVGDNSVAMGEIGSWFAPLFP
                     DALVVSVGGAEPSGNPAGRQWFSVQGITEDNRQARVDAIMPTFIETVRYWQKQSGVGA
                     NATALIGFSQGAIMALESIKAEPGLASRVIAFNGRYASLPETASTATTIHLIHGGEDP
                     VIDLAHAVAAQEALISAGGDVTLDIVEDLGHAIDNRSMQFALDHLRYTIPKHYFDEAL
                     SGGKPGDDDVIEMM"
     gene            complement(21475..21675)
                     /locus_tag="JN125_001618"
     CDS             complement(21475..21675)
                     /locus_tag="JN125_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YpfN family protein"
                     /protein_id="HAY8871436.1"
                     /translation="MDWLAKYWWILVIVFLVGVLLNVIKDLKRVDHKKFLANKPELPP
                     HRDFNDKWDDDDDWPKKDQPKK"
     gene            complement(21703..22830)
                     /gene="dapE"
                     /locus_tag="JN125_001619"
     CDS             complement(21703..22830)
                     /gene="dapE"
                     /locus_tag="JN125_001619"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020078199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HAY8871437.1"
                     /translation="MSCPVIELTQQLIRRPSLSPDDAGCQALLIERLQAIGFTVERMD
                     FADTQNFWAWRGQGETLAFAGHTDVVPPGDADRWINPPFEPTIRDGMLFGRGAADMKG
                     SLAAMVVAAERFVAQHPNHTGRLAFLITSDEEASAHNGTVKVVEALMARNERLDYCLV
                     GEPSSIEVVGDVVKNGRRGSLTCNLTIHGVQGHVAYPHLADNPVHRAAPFLNELVAIE
                     WDQGNEFFPATSMQIANIQAGTGSNNVIPGELFVQFNFRFSTELTDEMIKAQVLALLE
                     KHQLRYTVDWWLSGQPFLTARGKLVDAVVNAVEHYNEIKPQLLTTGGTSDGRFIARMG
                     AQVVELGPVNATIHKINECVNTADLQLLARMYQRIMEQLVA"
     gene            complement(22834..23190)
                     /locus_tag="JN125_001620"
     CDS             complement(22834..23190)
                     /locus_tag="JN125_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family reductase"
                     /protein_id="HAY8871438.1"
                     /translation="MVTLYGIKNCDTIKKARRWLEANNIDYRFHDYRVDGLDSELLNG
                     FINELGWEALLNTRGTTWRKLDETTRNKITDAASAAALMTEMPSIIKRPLLCAPGKPM
                     LLGFSDSSYQQFFHEV"
BASE COUNT         5834 a         6132 c         6225 g         5094 t
ORIGIN      
        1 aaatggcgaa tggcaatggc gaacggaatc acaaacaaat tggcgataca gtgctcaaag
       61 ccactggcga caaacagggt gatgggcaaa atcatggcga cgattttgtc gcataacgaa
      121 cgcccgcaat aactcatcca cagcgccagg caaaccatca gattgcacat aatgccgagg
      181 ctgacagatt cagtaaatgt atgatgcatt ttgccctcgg cgcagtgtaa aaccgcgact
      241 ccccacatcg cgttttcact catcaccagc ccggaaaacc agattaacaa actgaaacag
      301 gcaatacctg ccagattacc acaggccacc agaagtgcgt taatcagcca agttcgccaa
      361 ctaataacgc cccgactttt tgccatcacc gtcattaccg acgaggtgaa caggctggtg
      421 ccgcaaaccg ccagcaaaat aaagccgagt gtaaagcaaa ggccgcccac cagatgggtt
      481 aatgcctgtg aagacggggc atcggcgata acggaaaggt aaaaagtaaa tccgatcgcc
      541 ataaacacgc cagcggacat cgccattaaa aagaccgaca ctttactgcg ggcaatttta
      601 tggacggcaa tccgttcagc gattgccgct tttctggcgc tcaactgcaa gtcgaaagag
      661 agtttgtttc tcatgcatac tcctgcaaaa gcagattaca acacctcgcg aaccgagatc
      721 cccagacgct gcattcgtga cagcagcgtg gtgcgcttca tccctaatcg tgtcgccgcg
      781 ccacggggcc cggcaacaat gccattggtt tctcgcaata cctgaacaat gcgctgacgt
      841 tcttcttcgt cattctctgg cgtcgtcggg tgcagcaact gcgccattga actgcgaagc
      901 gctgaatctt catttagcgt cggcagtaaa cggctttgtc ggacattaag atgtaaattc
      961 agactgttac cgcgagtcag cagtactgct cgctcaatca cgttttccag ctcgtgcacg
     1021 ttgcccggcc agtcccacga catcaactgg cgtagcgcct cggtcgggat ggcgtcaatt
     1081 gcgcgattca tatggcgcgc cattttttgc gtgaaatgtt ttgctaaaag agggatatct
     1141 tccggacggt cgcgtagcgg cggcaattcc aatgggaaga cattcaggcg ataaaagaga
     1201 tcgctgcgaa actggcgatc ttcaaccatt tgccacaaat cacggttggt ggcggcaatg
     1261 actctgacat tcaccgggat cgttctactc ccgccgagac gctcaatctc ccgttcctgc
     1321 aatacgcgca gcagtttagg ctgaagttct aacggcagat cgccaatttc atcgagaaac
     1381 aacgtgccgc catcggcaat ttcaaaacga tcacgatgtg tattaatcgc accagtaaac
     1441 gcccctttgt catgaccgaa taactcactt tccagaagac tggcggggat ggcagcgcag
     1501 ttgattttga ccagcggttt gtcgcgtcgc gtgctaagtt gatggatcgc tctggcgatc
     1561 acctctttgc cggttccggt ttcaccacaa atcaataccg tactgtcgct cttcgctaca
     1621 atatctacct gctggagcag gtcttccatt gcctggcttt gatagataat gtcaccgatg
     1681 cccagattcg aaaggagctg ctcgctaagc tggtagtttt cttgctgcaa actttcctgc
     1741 aaatcggtca tgctacgcca ggcatcggca ttgccaacgg caatagcgat gcgatcggct
     1801 atgtgttgta gtagctggca gttttcctca ctaaagagag tggaagaggt atgcgccagc
     1861 aacaatgcac ccggtgtatg gttgccaaag gtaagcggta taaggagcgc agattcgcag
     1921 ccgttagatg caagtaagag taataacggg tcgcgttgcc agagaaacag atcgtctgca
     1981 cggtgcgtca aggtcggttg tcgggtttgt agcgtttgtg tcagcaatac actgtcgcca
     2041 ggcatattgc gtggcagaca cgcacaatgt gaggcagaaa gatcgctgca ccacaggcta
     2101 aacttctcgt tctttcgatg atcgcccagt accatactga ctgaagccag accgaaaaaa
     2161 tgatggatct cacgagcgac gtcagcgatc agatcgtcga gatcaagatg tgacagcact
     2221 gcattagtaa tatcaaccag tacccgatga tgatcgcgat ctttctccag caaacgcagc
     2281 gccacctgtt gttcttcatc attgagccat gattgcagaa ccggagtgat aatgcgtgcc
     2341 agccagttaa acagtgtgca atcctaggga gtaaaacggc tgccgtgggt acgaataaag
     2401 cgtagctccg ccattccact actgccgaga aggacggcgt gacgagaata atcgaccatc
     2461 tcgccctgat actctgttgt tgccgtcaca tcgctgccat catcatggta gcggtaatag
     2521 aagttgcttt tgataacatg cagttcaata agttgtaccg ggctgaacgg cggcggcatc
     2581 gggatgaagg cgcgtaataa agacgcctta ccgtgtttct gtgctaaccg ctccgcgagc
     2641 attccgttta ccgcttcaat tgttattcct tgtggcgggg caaacatcgc ctcgtctgac
     2701 atagccatca acagtcctta ttaatgagaa atccttctca cgcaattttt ctggccatca
     2761 gatagatggc cggttcctgc acaatttcat ccaacagatg aatgaattga atgctacgcg
     2821 cctgccacac agacgtcgcg tcatctgcca gtagcgcgaa tgcccgggtc aacagggcgg
     2881 tgtggctggc gtcaataaca atctcaccaa aggtcatcac ccccagcatc ttacgtcggg
     2941 cttgctcctc ttcgacctgt gcaagccaat cttcgttttc cgtcagtggg cagcggaagg
     3001 cgacattcag acaatcaatc acgccaacgt gatggccgat agccagcgag taatacatta
     3061 cctgagagct gtgttccggc atctcgtcgc tactggcgac aaactttttt cgcagcgtcc
     3121 agaaaacaat ttccccgcac tcttcagtca tgtaaccccc ggagtacgcg aaagagttgc
     3181 tgaacgatac tattgagacg tggatcgtcg gcatcgcgca accaggtgtt aacccgattt
     3241 cctgtaggat cgtcgcttaa atggcgcagg agccgatcgc aaatttctcg ccccagacga
     3301 tagcccgcca gccgccgcgc ttctcgctca atggcgatac gctgtgatgg cgggatctgt
     3361 ggccacaacg gttgcatagt caccccggtg ggatcgcgat aatccacagc gtgaatcttc
     3421 tgttgcagca aaccgagcgc cacggcgaaa ccgtgaatgg tggcggccgg tgttggcggg
     3481 cagccgggga tccaaacatc aatggggaca atggtgtcgc tgccgcccca gacgctgtag
     3541 agatcgtgga aaataccgcc gccgacaccg cacgcgccgt aggaaacaca gattttatga
     3601 tcgggggcag actcatacgc ccgaagtgca ggcatacgca tcgcccgggt gactgcgcca
     3661 gtaaataaca aaatatcggc gtgacgcggt gatgaaacaa ccttaatgcc aaaacgttct
     3721 gcgtcgaata cgggggtgat ggcagcaaaa atttcgattt cacaggcgtt gcagccgccg
     3781 caatcgacgc gataaacgta ggctgagcga cggatatcct gtagcaaatg ccgcttcatc
     3841 ttttgcgttt gctcatccag cgtgatgggc tggctgacat gttgtgtaag cactggactc
     3901 atagctgctc cttagccacc agcggtacat ctgtatcgtc gttgatcagc gtcgcgcgtt
     3961 gtttgcactc cgggcagacg ctcgcttgcg cccgcaacat ttcgcggttt tgtggcgcat
     4021 tttgttgctg tgccaacaat tcagcagcca gtgcgacggt tttttgcggg gcaaacgggc
     4081 gttcgcaacg gctgcaacgt tgtagatgga acgtcgcgcg ggtatagaga tcggctttat
     4141 tggtgacggt cagttcaaag ttattggtaa gctggatggc tctggtcggg cacacttctt
     4201 cacaacgtcc gcagtaaata caacgcccca gatagagctg ccaggtgcgc gaattttgct
     4261 ggtcgtcggt ctggatagtc agcgcatttg ccggacaagt acaggcgccg caggcaatac
     4321 attggctggg catcaggtcc ggtttcccgc gaaagcctgg gctgacctcc agtggcgcga
     4381 agggatattt caccgtcgcg gttccggcgc gcataatagt tttcagtaac ttcagcatct
     4441 tctgtcctta cttcagcggc gaacggttac gatcaatgcc gtagcgttcg atctctttat
     4501 acggcacggt ttttgactgg cgcttgcgca catctaccag cgtcacacgg tcggtacagg
     4561 agtagcaggg atcaaggcta ccgataatca gcggtgcgtc agaaacggta ttgccgcgca
     4621 gcatgtaacg caacaccggc cagttggcgt aggtggcggc acggcagcgc cagcggaaca
     4681 atttttggtt atcaccgagc atgctccagt gcacgtcttc accgcgtggc gcttcaacaa
     4741 agcccagcgc gaatgcgtga ggtttatagc taaagccttc ggtcagcagt ggggtatcca
     4801 gcatgttgtc gagggcaaat tccagcattg ccagcgaatc aaacgtctct ttgacacgga
     4861 ccatcacgcg ggagaaaaca tcgccgccgg tgaaggtaaa cagtgttttt ggaatattgc
     4921 cgtagtcggc gtaggggtga tcaaagcgca aatcacgggc aaaaccactg ccgcggatca
     4981 gcggccctac agggctataa tcacgggcga tttgtcggtc gagaatgcca atgtcctgag
     5041 tgcgttgttc catattcggc gtagcaagca gcatctctac cagctccgac acgtcggcgc
     5101 gcatctcgcg caccagtttc agcgtttgca gacgttgctc tttgagaata tcgcggcgaa
     5161 caccaccaat cagattcaga ccgtaggttt tacgcgaccc ggtcagcaat tccgccatcg
     5221 tcatcgactt ttcccgcacg cggaaaaatt gcataaagcc ggtatcaaaa ccaacaaaat
     5281 ggcaggagag gccaaggttg agcaaatgac tgtgtagccg ttcgacttcc agcagaatcg
     5341 agcgaatggt atgcgctcgt tgcggcacct caatccccag tgcattttca accgagttgg
     5401 tataggccac actgtgggca aaaccgcaaa tcccacacac gcggtccgat aagaaggtca
     5461 cttcgttgta gcccatccgc gtttctgcca gtttctccat gccgcgatgg acataaaaca
     5521 ggcggtaatc agcatcgaca atttgctcgc catccacaaa caagcggaag tgacccggtt
     5581 catcggaggt gatatgcagc gggccgacag ggatcacccg cgcatcgctg ttgccctcat
     5641 tgataaacgc atacgtttcg gaatctgtcg tcggttcagg gcgcagtcga taatccatcg
     5701 catctttgcg cagcggatgc atatcttccg gccagtcatc gggcaacacc aggcgacgct
     5761 gatccggcag gccaaccgga atcagcccgt acatatcgcg aatttctcgc tcgccccaga
     5821 ccgcggcagg gacgcgcggt gtgactgacg gaaactcccg actgtcggca tcgaccagtg
     5881 ccttcaccac gatccagcat ttttcggccc cttccattga aagggcataa taaaccgcgt
     5941 aatgaccgtt aagtgtccgc tcgtcgttgc caaacaggac tggaagccag ccatcatgtt
     6001 gataataaag ataatgtaca acgtcaggca gcagattgat tttcaccgta atggtgacct
     6061 gttcaggcgt ttgtcgctct tcatccagca ccgcgccggg gaactgcgtt ttcagggcgg
     6121 cgagaatcgc ttcgccacga tttgacgatg aattaacgtt cactgtgttt ctccgaaaca
     6181 gatgcggtgc ctgaaggcaa aaaatcatgc caggtgctac gttgtgcagg caggtcgtgc
     6241 gtccctgaga ggactatagt ggaagcgccc gccaggatcc tgatgacagg ttgtggaata
     6301 tgcgttccca tcgccagcat catgaccagc agaatcacca ttggcgaggt ggtcaaccag
     6361 ccgagatcac cccggttaac ggcctgcggc ggtttcgcca ttaacacccg cgcagccatc
     6421 cgtaccaggc ccgccagcac cagcgttaac agcaataaca gcaggacgat aatcagcagg
     6481 tgattacgtg ccagtcctgc ggtaacggtc ataaattcgc taagaaaaat gttgaagggc
     6541 ggcatccctg ccagcgccag cgcaccgccg ccaaacagca cggcggtaaa tggcatgatt
     6601 ttgagcatcc cacagacgac gttgagatcg cgcgtgccgt acttgagcag tacattgccg
     6661 gaaccgcaga acagcagcgt ttttgccaga ctgtggttta aggtgtgcag cagcgcggca
     6721 aaaattccca gcggcccgcc aatgcctagc gccaccgcga ccagccccat gttctccacg
     6781 ctggagtacg ccagcagacg cttaatgtcc cgctgtacca gaatgaaaaa tgccgccacg
     6841 gcaaccgaca acatgccgaa gatgagcaac aaccggttgg ggaaatcgct gccgatggct
     6901 tggcaaataa tgatgtaata gcgaatcagc accaacagcg cgcagttcag caatacggcg
     6961 gagagcaggg cgctgaccgg actcggcgct tcactgtgag catccggcag ccaggcgtgc
     7021 atgggaaata gcccggtttt ggtaccaaag ccaattagca caaacacaaa ggccaacagc
     7081 attaatgttg ggtcaagcaa ggacgattgc ttaagaatct cgctccagaa tatcgccatt
     7141 tctgcctgcg gcataacgct ggcggcgttg gcgtatacca gcacggtacc gaacagacca
     7201 aaagcgacac caacagtaca aataatgatg tacttccatg ctgattccag cgatgaacgc
     7261 tgaccgtaaa tgcctaccag aaacgccgag cttaaggtgg tggcttcgat cgccgcccac
     7321 atcacaatca ggttattgct ggtaacaacc agcagcatgg tgaacaaaaa cagatggaag
     7381 aaaccgtagt aatcgcacag tgtaacgggt gaaagctcgc cgtgtgccac ttcatgacgc
     7441 atgtagccaa tcgagtaaac accggtgaga aagccaatca caccaagaat ggcgaggaac
     7501 aaaccgccca gaccatcaat atgaagccac agtcccgcag cgaatatttc tcctgcatca
     7561 gcggcagttt ggaccaccca gagtgccaga atcagcagca gtgtgatccc taagctatgt
     7621 aatacagtca ccgtacaagt cgcagagagc ccccgtttcc ggcaggcaaa acagagcagc
     7681 gaaaaaagca gcggcgtgag caggagtaaa gcgaacatca cagaataact catctcatta
     7741 tcccttcagc gcggtcaagt tgttcacgtc cagcgtgccg tgggtacgcc atatttttct
     7801 tgccagtaac accatcacaa tgacggcgaa gatggcgtcg gtagcgatac ctatttccac
     7861 cagttccggt gctcgccagg caagaagcgc cagcaccaga tgggagccgt tttccatcag
     7921 gcagtaacca aaaatttgcc gcaggatatt gcgctggctg acaatgcaca gcaggccaag
     7981 cagaaaatga cctaacgcta ccgccagcgc cggtttcagc ccggtagcca tcggtagctt
     8041 cacgggctga acgacaaatg cgcaaagcag gacaattaac gccgcgagca gtgccatcat
     8101 tgccggaccg aataacgctt tttccgggat gttctgggga atatttcgtg cagcgtaagt
     8161 catgattaac ggtaccagca gcactttggt gataaaggcg ctggcggacc agatcagcag
     8221 ttgctctgcg gcgaacaggc acgagagagt ggcgaaaata gacaccagca ccagcgactg
     8281 gcaggcgtat aatccgcatg acaggcgata gcttttgacg ctaatcacaa acagcgatgt
     8341 cagcatcatc agtcccgcca gattatttac gatcatagaa ccgatcattc atcatctcct
     8401 tactgcaacc aggtcgcggc gattacgctg gaaatcagcg acatcacaat cagtacaatc
     8461 aacaccaggc gcattgaccc tggcagcggt gcggcatcgg cgacggcctc gctcggtttg
     8521 ccaggcacaa cgcgaccaaa ccagcgaata aaccaggcga aactggcgac cgattcaatc
     8581 atcagcagaa tcatggcggg cagcaggatc cagtactcca ctgacaacgc aaaaccggcg
     8641 gcaaacagcg ggaatttact gaagaagccg ttgaacggcg gcacaccggt aatcgccagc
     8701 gctgccacgc agaaacccac gcctggcaac ggcagggtgt gcaatacgcc acgcagacgc
     8761 ggcaacaagc gcgtgccgca gctgtaactc agcgcacctg ctacaaggaa aaacaggctt
     8821 ttagcgaacg cgtggttgac gatgtaggcg atgctgccct ccagtgccag ccgcccactt
     8881 tcaccatcga tgcggcgtgg agataggcgc tgatcggtgt tggcgcttcc attgcgtccg
     8941 gtagccacgc ttgcatcggt agctgggccg atttccccca cgcggcaaac aggatgccgc
     9001 cataaaccag ataacgtgcg tcgccatgta actcgctcat cgcgctaagc acaaacgttc
     9061 cggtctgcaa aaacagcgtg gcggcggcaa gatacaaccc caacgaaccg atatgggtga
     9121 taagcaacgc ttttagtgtt gaacgctgcg ctttatcgct ctggtaataa ctgatcaacg
     9181 cccaggagca gccgccctaa tttcaaaaaa caacaactga ccgagcagcg tcgaggagag
     9241 taccagtccc gccatcgcgc cgataaacac cagcaaaaat gcgtaataac gattcgtgcc
     9301 gttatgcggg tgttcgcgat ttttatccgt cagataaccc gtggagtaga gcgtgaccag
     9361 caaaccgaga aacaccacca caaacagaat cagcgtactc acgcgatcaa tgaccaggcc
     9421 aaacaatgcc acatccccca cgttgaccaa cgtcaacgtg acggcaactt tatcggcctg
     9481 ataaaacgcg gagatcagcg acaacatgca cagcgtggtc agtgcggcga acaaaacccc
     9541 cattcggcgg cccgacgttg tggcgaaaac gaaacgacca gtgcgccgat aaaaggcagc
     9601 attaacgtcg tcagagcaag attttccata ttccgtcagt gctccttaca gaccggttaa
     9661 ccagaagacc catgcaagcg cagcaaggct gaagccaagc caggtcacat ggtgaatgag
     9721 taaaaaacgc ccgcgtgcca gcgtgttttc tgcgattgag gccagtacaa aaatcagcaa
     9781 aaccttgagc agcgtaacga caagtgaagt cagcaggcag gcgagagaaa gttcttgcgc
     9841 gcgcccaaag ggcagaaaca gggccacaaa cagtgctgcc atcacgacct gtttcagccc
     9901 cagcccccat ttcgctagcg ccagcccggc accggaatat tcggtcagcg ggccttcctg
     9961 taattcctgt tctgcttcag caacatcaaa gggaattttt cccatctcaa tgaagcaggc
    10021 aaaaccacag gccagtaatg ccagtacggt ggttagcggc gagttccagc ccgttgccag
    10081 cgtattgctg atcatctcga tatgcgtgga acctgctatc agcgccaata ccagcagtga
    10141 gagaatgagc atgggttcga ccagaatgcc gagcgtcaac tcgcgactgg caccgactcc
    10201 cgcaaacggg cttccggtat ccagcccgga aagagcaaag aaaaaacgaa acagggcaag
    10261 aagatagata agggtgatca gatcgccgcc gcccgcaaaa ggggaaacgg taataaaaag
    10321 tggtagggcc atcgccagca ccagcatgct gctgattaat acccacggca tcaggcggaa
    10381 catcagacct gaagatatag gcgcaacttc ctggcgttta aacagtttgt ggatctcgcg
    10441 ataatcctgc cagatccccg gcccgcggcg ggagtgcata cgcgcgcgta tctgctggga
    10501 aatacccgta aaaagcgggg ttagcagcag aatcacggcc tgtgctaacg caaaaatgac
    10561 cagatattcg tcgcaaagag tttgtctcat ggtgatttcc ttagacggca atagcgatta
    10621 gcagcacaac tagtgcggca actagataca ggcaatagag acgaaagtcg ccgctttgca
    10681 gatgctgtat ttctttggcc agccgttggg tggcgctcac gatggggcgg atcacccgct
    10741 catcccagaa gggttctgtg ctctgagccc tggcggtgac gtgcgcaaga tctttattta
    10801 gcctcagcgt agggtcgagc tgttgtcgta gacgaaataa cgcagagaag accacacgca
    10861 gcggctgcat cacgccattg cctgacggag ccatcgcgtt ttcccagccg tagccgcatg
    10921 cccaggcatc tcctgtgcga cgaaacgctg cgcggcgcga acgacaccac agccagtaaa
    10981 ggcctggcag caaaggcatc gccagtagta acagcaacag taatgaagga gtgacccgtg
    11041 tatgaaacgt gccgggtaca agtgctattc cgctggcgac agtgacggga ggggtattgg
    11101 taaacgcatg ggcaatatgc attatcttcg gtgccagcca actggcacta agcgcaatta
    11161 atacgcagag tgccgcgagc agtagcatgg cgacgatcat cgtatttggc acttcctgtg
    11221 cctcttcagc gtgtgtactg cgcggcgcac cacagaaagt aataccgtac attttgacga
    11281 agcacattac tgccagccca ccagtgactg ccagcattac catagcaata ggacccgcaa
    11341 gttgtagcgc tacggcttcc acacgactta gtgagaacag cgactgccag gtgtaccata
    11401 tcgctgataa aaccattcag cggaggaatg gctgatatcg cgaggcaacc aatcaggcat
    11461 gctgcggctg tccacggcat ccgtttcgcc agtgccccca ttttttccat gtcgtgggta
    11521 tgcaaacgcg aaataatcgc gcccgcgccg agaaatagca gccctttgaa cagcgcatgg
    11581 ttgagcagat gaaacagtgc gccgagcagt ccaaccacgg tgagcagcgg gtcgtgcagt
    11641 gacagaccgt ccatcgccac accgactgcc agcaaaataa tgccgacgtt ttcgacggta
    11701 ctccaggcca gcagccgttt gatatcctgt tccgccagcg catatagcac gcccaggagc
    11761 gcggagattg cgccgatcgc catcaccaga atgccccacc acagaggcaa acccgtttgc
    11821 gccagcagat ccatcgctac tttcaggatg ccgaaaatac cgattttgac cattacgcca
    11881 gacatcaacg ccgaagcgtg cgatggtgcg gcagggtgag cgcgcggcaa ccagctgtgc
    11941 aacggcatca tcccggcttt cgcgccaaaa ccgaaaaagg ccagcagaaa caccgccgac
    12001 gccagccccg gagaaagtga aagcgtgcga aactggcaaa atcgaggctg ccgctttcgc
    12061 gccccatcag caagaaggcg atcataatca gcaccgatcc ggcgtgggcg ataaaaaagt
    12121 agagcatgcc agcgttgatc gacgttttat cctgcctggc aatgaccaga aaccaggaag
    12181 acagcgacat catttcaaac agcacgatga accaaaaagc gttgtccatc accagcaggg
    12241 caaccatcga tgcgatgaaa agattcataa agaagcccat cgccgccgcg cctttgccct
    12301 cgtattcgcg catataagtc aatgaataga gcgaacaaac caccaccagc aaggagataa
    12361 ccagcaccat aaatgccgag aggctatcca ttcgcagggt taaatcggca aagtcaaaag
    12421 gggtggcaaa acgggcgact aaagttacac cagcatgtaa ttgcgtaatt ccgctgatga
    12481 tgccaatcac gccgcccacc agcgatgtga tgccggaaag cttaatagcc agtctgtcca
    12541 gaccgagtaa aaacagcgaa gccagactgg caaacagaaa gaggatcagc gaccaggtta
    12601 ataattgcag ggcatccatt agtgttgctc ctgagtgagg gaaaggggat cctccccgcc
    12661 attggcaaac cagcttgcgg caaggcgctg tttttctttc atctgacgtt gcaggctatc
    12721 gtcggtaatc agccgtaacg cctgattcgg gcaagcgcga acgcaggccg gaccttctgg
    12781 caagaaatta cacaggtcgc atttcaccgc gacggtctgg acacccggtt cccagcgcag
    12841 caaagcatgt tgggtcggcg cgttttcttc gccatctttg agtgagccgt cagcctgaaa
    12901 aacatattgc gcaggggcat tcaccggacg gcttcctgaa gcgctgattg cgccaaatgg
    12961 gcagaccacg gcgcaaagct tgcagccaat acagaggctt tcgttgagtt ggatcgcatc
    13021 atccctctgg gagatggcat tgaccgggca gacctgcagg caaggggctt cctcacagtg
    13081 atgacacacg acaggggcag tgattgttga cgtcttcgcc agggccaggc gcgggtgttg
    13141 ctgtaaacct tgcgttttat gcacgtccga acaggtagcg agacaggtat tacatcctgt
    13201 acaccacagt ggttcggcca ccacaaagcg gttcatgtcg gctccttgaa aatgatatga
    13261 aacattgcat ttcatattgc ataaaggatg ccagtctgat taatttaata tattcaataa
    13321 attatgtatt aactgggttc tgaacggtac aaaaatgatg gtcattaacg ttcagcaaaa
    13381 aatggattcg acacccgtgt cgcaggggaa agcgagaatg tgatcttgat cacgagaagt
    13441 gaggtgtgct gaccgcaagc gcagccagca cggaatggag caaagtaatc aggcgtgttc
    13501 tttcagccag ttcagcacaa cgtcgtggtg attgctggtt ttaaaatcgt caaagacatg
    13561 ttcgattttg ccatcagcgt caatcaggaa gctgatgcga tgaataccat cgtaggtttt
    13621 gcccatgaag gacttttcac cccagacgcc gaattgttcg cacacctggt ggtcctcatc
    13681 agacaggagc gtaaagttaa gcagctcttt ttccgcaaaa cgggagagtt tttcgggttt
    13741 atcggtgctg atacccagca catcaacgcc cgcttttttc aactcatcca tgttatcgcg
    13801 taagccgcag gcctgtacgg tacagccggg ggtcatggct ttcgggtaga aataaaccag
    13861 aacacgctgt ccctggaagt cggtcaaatt aacttgttct ccgtcttgat ccggcaagct
    13921 aaatttcggt gcgatatcac cggctttcag tggattcatt acttaactcc atcctgttca
    13981 tcatgttggg aataattgac gacgttaata ctgccttgtg cattgagttc tgtacatagg
    14041 gctttgaacg cttgctcaat atttgctgcg tccgcagatg cggggctgtg ggcggtgatc
    14101 tgaatatgca actgcgcagc ccgttcattt tcagcaggtt gcgtgcgcga caccagctcc
    14161 gcaatgttca tatgatgcgc gtcgaaaagt gctgtgaagc gttcaattaa atgcggggag
    14221 tctgcaacat cgacctgaac ccagacagat gctggcattg gcggacgcgg acgcgccgtc
    14281 gtgcgcttca tcacgattaa aagatccagt tcggcacctt tcaacggtaa cgttgattca
    14341 atcagagtaa tggcattcca tgaaccggaa agcagcatga taaacgtgaa ctcttctccc
    14401 agcatagcca ggcgactgtc ttcaatatta cagccgcaac tactgacatg acgggtgatg
    14461 gtgttcacaa ttccagggcg atcggcaccc aacgcagtga tcaccagata atgttgcgat
    14521 gacagtgtca aactggttat tcctttaagg ggtgagttgt tcttaaggaa agcataaaaa
    14581 aaacatgcat acaacaatca gaacggttct gtctgcttgc ttttaatgcc ataccaaacg
    14641 taccattgag acacttgttt gcacagagga tggcccatgt tcacgggaag tattgtcgcg
    14701 attgttactc cgatggatga aaaaggtaat gtctgtcggg ctagcttgaa aaaactgatt
    14761 gattatcatg tcgccagcgg tacttcggcg atcgtttctg ttggcaccac tggcgagtcc
    14821 gctaccttaa atcatgacga acatgctgat gtggtgatga tgacgctgga gctggctgac
    14881 gggcgcattc cggtgattgc cgggaccggt gctaacgcta ctgcggaagc cattagcctg
    14941 acgcagcgct tcaatgacag cggtatcgtc ggctgcctga cggtaacccc ttactacaat
    15001 cgtccgtcgc aagaaggttt gtatcagcat ttcaaagcca tcgctgaaca tactgacctg
    15061 ccgcaaattc tgtataatgt gccgtcccgt actggctgcg atctgctccc ggaaacggtg
    15121 ggccgtctgg cgaaagtaaa aaatattatc ggaatcaaag aggcaacagg gaacttaacg
    15181 cgtgtaaacc agatcaaaga gctggtttca gatgattttg ttctgctgag cggcgatgat
    15241 gcgagcgcgc tggacttcat gcaattaggc ggtcatgggg ttatttccgt tacggctaac
    15301 gtcgcagcgc gtgatatggc ccagatgtgc aaactggcag cagaagggca ttttgccgag
    15361 gcacgcgtta ttaatcagcg tctgatgcca ttacacaaca aactatttgt cgaacccaat
    15421 ccaatcccgg tgaaatgggc atgtaaggaa ctgggtcttg tggcgaccga tacgctgcgc
    15481 ctgccaatga caccaatcac cgacagtggt cgtgagacgg tcagagcggc gcttaagcat
    15541 gccggtttgc tgtaaagttt agggagattt gatggcttac tctgttcaaa agtcgcgcct
    15601 ggcaaaggtt gcgggtgttt cgcttatttt attactcgct gcctgtagtt ctgactcacg
    15661 ctataagcgt caggtcagtg gtgatgaagc ctacctggaa gcggcaccgc ttgcggagct
    15721 tcatgccccg gctggaatga ttttgccggt gacctccggt gattatgcaa tcccggtgac
    15781 caacggtagt ggtgctgtcg gtaaggcgct ggacattcgt ccaccagccc agccgctggc
    15841 actggtttct ggcgtgcgta cccagttcac gggcgatacc gcttcattgc tggtggaaaa
    15901 tggtcgtggc aatactctgt ggccgcaggt ggtttgcgtg ctgcaggcga aaaactacac
    15961 catcacccaa cgtgatgatg ctggtcagac actgaccatc gattgggtac aatggaaccg
    16021 tctggacgaa gacgagcagt atcgtggtcg ttatcaaatc tctgttaagc cgcagggtta
    16081 tcagcaggcg gttacggtta aactgctgaa cctggaacag gcgggcaaac cggttgcaga
    16141 cgcggcttcc atgcagcgtt acagcacgga gatgatgaac gttatttccg ccggtctgga
    16201 taaatctgcc tctgacgccg cgaacgctgc gcaaaatcgt gcctccacca ctatggacgt
    16261 acaaagtgca gctgatgaca ccggtttacc gatgctggtc gtacgcgggc cgttcaatgt
    16321 ggtttggcaa cgtctgccag cggcgctgga aaaagtgggc atgaaagtga ccgacagcac
    16381 ccgttcgcag ggtaacatgg ccgtaactta taagccgctg tctgacagcg actggcagga
    16441 actgggcgcg agcgatccag gcctggcatc cggtgactat aaactgcagg ttggcgattt
    16501 agataaccgc agcagcctac agttcatcga tccgaaaggt catactctga ctcagagtca
    16561 gaacgacgcg ctggtagctg tcttccaggc tgcgtttagc aagtaaaaat acagggctgg
    16621 agtcatccgg cccttttttc tgatatgata cgcaaacgtg tgcgtcggca gaaaaatgca
    16681 attttagcgg taattcgcac gaaatttgtt tgtcggacgt aggtcggata aggcgttctt
    16741 gccgcatccg acaaaacatc cggcacacca gacagcaaaa gattttaaaa cgttaattca
    16801 cacccaggag tgataaagat gcaaaagcaa gctgagttgt atcgtggtaa agcgaaaacc
    16861 gtatacagca cggaaaaccc ggacctgttg gtgctcgaat tccgcaatga tacgtcagca
    16921 ggggatggcg cgcgcattga gcagtttgat cgcaaaggta tggtgaacaa caagttcaac
    16981 tacttcatta tgagcaaact ggctgaagcg ggtatcccga ctcaaatgga gcgtctgctc
    17041 tccgataccg aatgtctggt gaaaaagctg gatatggtgc cggttgagtg tgtcgtgcgt
    17101 aaccgtgctg caggctctct ggtgaaacgt cttggaatcg aagaaggtat tgagctgaac
    17161 ccgccgctgt tcgatctgtt cctgaaaaac gatgccatgc acgatccgat ggtcaacgaa
    17221 tcttactgcg aaacctttgg ctgggtgagc aaagagaacc tggcgcgtat gaaagagctg
    17281 acctacaaag cgaacgacgt gctgaaaaaa ctgttcgatg atgctggtct gattctggtc
    17341 gacttcaagc tggagtttgg tctgtacaaa ggtgaagtgg tactgggcga tgagttctcc
    17401 ccggacggca gccgcctgtg ggacaaagaa acactggaga aaatggacaa agaccgtttc
    17461 cgccagagcc tcggtggcct gatcgaagcc tatgaagccg tcgcccgccg cctgggtgta
    17521 cagctggact gatttttctg ttcatcatct tgccgtgcag ctggcacggc aagacaaccg
    17581 ctctcggaat atatgcattg aacgctcatt cctccgccat ttcatcccgc tttcctgtgg
    17641 taattttcct ctgaaccacc tacgatcatt tctataatga atatattgtt gaggtatcta
    17701 tgcgttggca agggcgacgt gaaagtgaca atgttgaaga caggcgcaac agctccggtg
    17761 gtccgtctat gggcggtccc ggttttcgcc tgccaagcgg taaaggcggg ctgattttac
    17821 tgatagtcgt gctggttgca ggctactatg gtgttgattt aaccgggtta atgactggac
    17881 agccggtttc ccaacaacaa tcaacgcggt ccattagccc taatgaagac gaagctgcaa
    17941 aattcacctc ggtgattctg gcaaccacgg aagacacctg gggacaacag ttcgagaaga
    18001 tgggtaagac ctatcagcaa ccgaagctgg tcatgtaccg tggaatgacg cgcaccggct
    18061 gcggggcggg ccagtccatt atggggccgt tctattgccc ggcggatggc acagtttata
    18121 tcgatctctc cttctatgat gacatgaaag acaaacttgg cgcggatggc gattttgccc
    18181 aggggtacgt tatcgcccat gaagtcggtc atcatgtgca gaaactgtta ggcatcgagc
    18241 cgaaagttcg tcaactgcaa caaaacgcga cgcaggcgga agtgaaccgc ttatctgtgc
    18301 gtatggaact ccaggccgac tgttttgccg gtgtctgggg gcataacatg cagcagcaag
    18361 gtgttctgga aaccggcgat ctggaagagg cgctgaatgc ggcgcaggcc atcggcgatg
    18421 accgtttaca acagcaaagt caggggcgag tagtaccaga cagtttcaca catggcactt
    18481 ctcagcaacg ctacagctgg tttaaacgtg gtttcgacag cggcgatccg gcacaatgca
    18541 atacttttgg taaaagcatt taatttccgg ggcagggatg gctgaactga ctgcgcttta
    18601 cacattaaca gcgcaaatga aacgtgaagg gatccgccgc ttgctggtgt tgagcgggga
    18661 agagggttgg tgttttgatc atgcgcttaa gttgcgtgat gccttacttg gcgactggct
    18721 gtggatttcg ccgcagccag atgctgaaaa ccactgttct ccctcggtgc tacaaacttt
    18781 acttgggcgc gagttccggc atgcggtatt cgacgcccgc cacggctttg atgccgctgc
    18841 ctttgcggca cttagcggaa cgttgaaagc gggaagctgg ctggttttgt tactccctgt
    18901 atgggaagag tgggaaaacc aacctgatgc cgactcgctg cgctggagtg attgccctga
    18961 ccctattgcg acgccgcatt ttgtccagca tctcaaacgc gtacttacgg cggataacga
    19021 cgctattctc tggcggcaaa accagccgtt ctcgttggcg cattttactc cccgtactga
    19081 ctggcacccc gcgaccggcg caccacaacc agaacaacag caactcttac agcagctact
    19141 gaccatgctg ccgggcgtgg cagcggtaac ggctgcgcgt gggcgcggta agtcggcgct
    19201 ggcagggcaa ctcatttctc gtattgcggg cagtgcgatt gtcaccgcgc ccgcaaaagc
    19261 ggcaacggat gtactggcac aatttgcggg cgagaagttt cgctttattg cgccggatgc
    19321 cttgttagcc agcgatgagc aagccgactg gctggtggtc gatgaagccg cagccatacc
    19381 tgcgccgttg ttgcatcaac tggtatcgcg ttttcctcga acgttgttaa ccactacggt
    19441 gcagggctac gaaggcaccg gacgtggttt tttgctgaaa ttttgcgctc gctttccgca
    19501 tttacaccgt tttgaactgc aacagccgat ccgctgggca cagggatgcc cgctggaaaa
    19561 aatggttagt gaggcactgg tttttgacga tgaaaacttc acccatacac cacaaggcaa
    19621 tatcgtcatt tccgcatttg aacaaacgtt atggcgaagc gagccagaaa cgccgttaaa
    19681 ggtttatcag ttattgtctg gtgcgcacta ccggacttcg ccgctggatt tacgccggat
    19741 gatggatgca ccagggcaat attttttaca ggcggctggc gaaaacgaga ttgccggagc
    19801 gctgtggctg gtggatgagg ggggattatc tcaacaactc agtcaggcgg tatgggcagg
    19861 ttttcgtcgc ccgcggggta atctggtggc ccagtcgctg gcggcgcacg gtagcaatcc
    19921 actggcagcg acattgcgtg gacggcgggt cagccggata gcagttcatc cggctcgtca
    19981 gcgcgaaggc gttgggcaac agctcattgc cagcgctttg caatatacgc aagacctcga
    20041 ctatctttcg gtgagttttg gttacaccgg ggagttatgg cgtttctggc aacgctgcgg
    20101 ttttgtgctg gtacgaatgg gtaatcatcg tgaagccagc agtggttgct atacggcgat
    20161 ggcgctgtta ccgatgagtg atgcgggtaa acagctggct gaacgtgagc attaccgttt
    20221 acgtcgcgat gcgcaagctc tcgcgcagtg gaatggcgaa acacttcctg ttgatccact
    20281 aaacgatatc gtgctttctg acgacgactg gcttgaactg gccggttttg cttttgctca
    20341 tcgtccgcta ttaacgtcgt taggttgctt attgcgtctg ctacaaacca gtgaactggc
    20401 attaccggcg ctgcgtgggc gtttacagaa aaatgccagt gatgcgcagt tatgtaccac
    20461 acttaaactt gcaggccgca agatgttact ggtccgtcag cgggaagagg ccgcgcatgc
    20521 gctgttcgca cttaatgatg ttcgcactga gcgtctgcgc gatcgcataa cgcaatggca
    20581 attttttcac tgactccttc aattttctcc catggtcatt gtgagccagc ggcgtaaaat
    20641 taatgacatc agttaaggag ttcgccatga aacatgacca ttttgttgtt caaagcccgg
    20701 ataaacctgt gcaacagttg ttactgcttt tccatggtgt cggggataac tcggtggcaa
    20761 tgggggaaat aggcagttgg tttgcaccgc tgtttcctga tgcgctggtg gtgagtgtcg
    20821 gtggcgcgga gccgagcggt aatccggcgg ggcgtcagtg gttttcggtg cagggtatta
    20881 cggaagataa tcgccaggcg cgtgtggatg ccatcatgcc gacgtttatt gaaacggtac
    20941 gctactggca gaaacagagt ggagtagggg ctaacgccac ggcgttaatc ggtttctctc
    21001 aaggcgcgat tatggcgctg gagagtatta aagccgaacc gggccttgct tcacgcgtca
    21061 ttgcttttaa cggacgctat gcgagcctgc cggaaaccgc gtctacagca acgacaattc
    21121 acctgattca tggcggtgaa gatccggtta tcgatctggc gcatgcggtt gcggcgcagg
    21181 aagcgttaat cagtgccggt ggtgacgtga cgctggatat cgtggaggat ttaggccatg
    21241 cgatcgacaa tcgcagtatg caatttgccc tggatcactt gcgttatacc attccgaaac
    21301 attatttcga cgaagcgcta agtggcggta agcctggcga tgatgatgtg attgaaatga
    21361 tgtaaaagac agattacctg gcctgataag acgcgtgagc gtcgcatcag gcatcgttca
    21421 ccattgccgg atgcggcgtt aacgccttat ccggcctacg gttgagcact cagcttactt
    21481 cttcggttga tcctttttcg gccagtcgtc gtcatcgtcc cacttatcgt tgaaatcacg
    21541 atgcggggga agctccggct tgttggcgag aaatttcttg tggtcgacgc gcttgagatc
    21601 tttaatcacg ttcagcagga cgcctaccaa aaagacaatc accagaatcc accaatattt
    21661 agccagccag tccatgctta tttcctcttg cagaaccact catcaggcga cgagctgttc
    21721 catgatacgt tgatacatac gggcaagtag ctgcaggtcg gcagtgttca cacattcatt
    21781 aattttatga atagtggcat tgaccggccc gagttccacc acctgcgccc ccatgcgagc
    21841 aataaagcgc ccgtcggacg ttccgcctgt ggtcagtagc tgcggtttaa tttcattata
    21901 gtgctcaacc gcgttaacga ccgcatccac cagtttaccg cgcgcggtca aaaatggctg
    21961 cccggaaagc caccaatcca ccgtatagcg cagttgatgt ttttcaagca gggcaagcac
    22021 ctgcgctttg atcatctcat cagtcagttc ggtgctgaag cggaagttaa actgcacaaa
    22081 cagttcaccc ggaataacat tgttactgcc cgttcccgcc tgaatattag caatctgcat
    22141 actggtcgcc gggaaaaatt cattgccctg atcccactca atagccacta attcattaag
    22201 gaaaggtgct gcgcgatgta ctggattgtc agccagatgc gggtaggcca catgcccctg
    22261 aacgccatga atggtaaggt tgcaggttaa cgatccgcga cgaccatttt tcaccacatc
    22321 accaaccact tcgatactcg acggttcgcc gaccaggcag taatcgagac gctcattacg
    22381 tgccatcaac gcttcgacga cttttaccgt accgttgtgg gcactggctt cttcatcaga
    22441 ggtgatcaga aatgccagtc gccccgtatg gttgggatgt tgtgcgacaa agcgttctgc
    22501 cgctaccacc atcgccgcca gcgagccttt catatctgcc gcaccgcgcc cgaataacat
    22561 gccatcacga atggtgggtt caaacggcgg attgatccaa cgatcggcgt cgccaggcgg
    22621 caccacgtcg gtatgcccgg caaaggctaa cgtttcacct tgcccacgcc atgcccaaaa
    22681 attctgcgta tcggcaaagt ccatgcgttc aacggtaaaa ccgatcgcct gcaaacgttc
    22741 aatcaacaaa gcctggcatc ctgcgtcatc aggactcagg gaagggcggc gaataagctg
    22801 ttgtgtcagc tcaataaccg ggcacgacat agactacacc tcatggaaaa attgctgata
    22861 actggaatca ctgaaaccca gcagcatagg cttaccaggc gcgcagagca atggacgttt
    22921 gataattgaa ggcatttcag tcattaatgc cgccgcagag gccgcatcgg tgattttatt
    22981 gcgggtggtt tcgtccagtt tacgccaggt tgtaccacgg gtgttcagta acgcttccca
    23041 gcctaattcg ttgataaaac cgttcaataa ttcgctgtcc agcccatcga cgcggtaatc
    23101 atgaaaacga tagtcgatgt tattggcttc cagccaacgg cgagcctttt taatggtgtc
    23161 acaatttttg atgccgtaaa gtgtaaccat aatgaatcct ttttcgatct atgagaataa
    23221 atactcattt aagggtgaaa acattttgcc tgcaaatgat tatcaggaaa tataacatta
    23281 tcgaa
//
LOCUS       DADMHM010000047        22949 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.048, whole genome shotgun sequence.
ACCESSION   DADMHM010000047 DADMHM010000000
VERSION     DADMHM010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22949)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22949)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22949
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.048"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(378..1355)
                     /gene="epmA"
                     /locus_tag="JN125_001621"
     CDS             complement(378..1355)
                     /gene="epmA"
                     /locus_tag="JN125_001621"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000004771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P--(R)-beta-lysine ligase"
                     /protein_id="HAY8871439.1"
                     /translation="MSETASWQPSASIPNLLKRAAIMAEIRRFFADRGVLEVETPCMS
                     QATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNE
                     EMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCPAAESLSYQQAFLRYLEID
                     PLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPAS
                     QASLAQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQ
                     HPIDQNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVDRA"
     gene            1680..3488
                     /gene="frdA"
                     /locus_tag="JN125_001622"
     CDS             1680..3488
                     /gene="frdA"
                     /locus_tag="JN125_001622"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase (quinol) flavoprotein
                     subunit"
                     /protein_id="HAY8871440.1"
                     /translation="MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS
                     HTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGC
                     PWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLD
                     ILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAL
                     SHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLG
                     EPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICE
                     LAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRL
                     GSNSLAELVVFGRLAGEQATERAATAGNGNEEAIEAQAAGVEQRLKDLVNQDGGENWA
                     KIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIE
                     LGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEY
                     SDVKITTLPPAKRVYGGEADAADKAEAANKKEKANG"
     gene            3481..4215
                     /locus_tag="JN125_001623"
     CDS             3481..4215
                     /locus_tag="JN125_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HAY8871441.1"
                     /translation="MAEMKNLKIEVVRYNPEVDTAPHSAFYEVPYDATTSLLDALGYI
                     KDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERD
                     LVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACP
                     QFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKH
                     VDPAAAIQQGKVESSKDFLIATLKPR"
     gene            4226..4621
                     /gene="frdC"
                     /locus_tag="JN125_001624"
     CDS             4226..4621
                     /gene="frdC"
                     /locus_tag="JN125_001624"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdC"
                     /protein_id="HAY8871442.1"
                     /translation="MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELI
                     FGLFALKNGPEAWAGFVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDE
                     KMGPEPIIKSLWAVTVVATIVILFVALYW"
     gene            4632..4991
                     /gene="frdD"
                     /locus_tag="JN125_001625"
     CDS             4632..4991
                     /gene="frdD"
                     /locus_tag="JN125_001625"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdD"
                     /protein_id="HAY8871443.1"
                     /translation="MINPNPKHSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGL
                     FPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFY
                     GLAAILTVVTLIGIVTI"
     gene            5054..6187
                     /gene="blaEC"
                     /locus_tag="JN125_001626"
     CDS             5054..6187
                     /gene="blaEC"
                     /locus_tag="JN125_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001336292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BlaEC family class C beta-lactamase"
                     /protein_id="HAY8871444.1"
                     /translation="MFKTTLCALLITASCSTFAAPQQINDIVHRTITPLIEQQKIPGM
                     AVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLS
                     DPATKYWPELTAKQWNGITLLHLATYTAGGLPLQMPDEVKSSSDLLRFYQNWQPAWAP
                     GTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVFQPLKLNHTWINVPPAEEKNYAWG
                     YREGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLTPLDINEKTLQQGIQLAQSRYW
                     QIGDMYQGLGWEMLDWPVNPDSIINGSDNKIALAARPVKAIKPPTPAVRASWVHKTGA
                     TGGFGSYVAFIPEKELGIVMLANKNYPNPARVAAACQILNALQ"
     gene            6276..6809
                     /locus_tag="JN125_001627"
     CDS             6276..6809
                     /locus_tag="JN125_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HAY8871445.1"
                     /translation="MRLLPLVAAATAAFLVVACSSPTPPRGVTVVNNFDAKRYLGTWY
                     EIARFDHRFERGLEKVTATYSLRDGGGLNVINKGYNPDREMWQQSEGKAYFTGAPTRA
                     ALKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVAT
                     REGFDVSKFIWVQQPGS"
     gene            complement(6806..7123)
                     /locus_tag="JN125_001628"
     CDS             complement(6806..7123)
                     /locus_tag="JN125_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418572.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quaternary ammonium compound-resistance protein
                     SugE"
                     /protein_id="HAY8871446.1"
                     /translation="MSWIILVIAGLLEVVWAVGLKYTHGFSRLTPSVITVTAMIVSMA
                     LLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESANPMRLASLALIVLGIIGLKL
                     STH"
     gene            complement(7305..7451)
                     /gene="ecnB"
                     /locus_tag="JN125_001629"
     CDS             complement(7305..7451)
                     /gene="ecnB"
                     /locus_tag="JN125_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein toxin entericidin B"
                     /protein_id="HAY8871447.1"
                     /translation="MVKKTIAAIFSVLVLSTVLTACNTTRGVGEDISDGGNAISGAAT
                     KAQQ"
     gene            complement(7562..7687)
                     /gene="ecnA"
                     /locus_tag="JN125_001630"
     CDS             complement(7562..7687)
                     /gene="ecnA"
                     /locus_tag="JN125_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein antitoxin entericidin A"
                     /protein_id="HAY8871448.1"
                     /translation="MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS"
     gene            complement(7739..8305)
                     /gene="efp"
                     /locus_tag="JN125_001631"
     CDS             complement(7739..8305)
                     /gene="efp"
                     /locus_tag="JN125_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HAY8871449.1"
                     /translation="MATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLR
                     RLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGD
                     NAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGA
                     VVKVPLFVQIGEVIKVDTRSGEYVSRVK"
     gene            8347..9396
                     /gene="epmB"
                     /locus_tag="JN125_001632"
     CDS             8347..9396
                     /gene="epmB"
                     /locus_tag="JN125_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000940527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF-P beta-lysylation protein EpmB"
                     /protein_id="HAY8871450.1"
                     /translation="MAHIVTLNTPSREDWLTQLADVVTDPDELLRLLNIDADEKLLAG
                     RSAKKLFALRVPRSFIDRMEKGNPDDPLLRQVLTSQDEFVVASGFSTDPLEEQHSVVP
                     GLLHKYHNRALLLVKGGCAVNCRYCFRRHFPYAENQGNKRNWQTALEYVAAHPELDEM
                     IFSGGDPLMAKDHELDWLLTQLEAIPHIKRLRIHSRLPIVIPARITDALVERFSHSTL
                     QILLVNHINHANEIDETFRQAMAKLRRVGVTLLNQSVLLRDVNDNAQTLANLSNALFD
                     AGVMPYYLHVLDKVQGAAHFMVSDDEARQIMRELLTLVSGYLVPKLAREIGGEPSKTP
                     LDLQLRQQLLIKQGS"
     gene            9770..10639
                     /locus_tag="JN125_001633"
     CDS             9770..10639
                     /locus_tag="JN125_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710010.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871451.1"
                     /translation="MAISIKGVNTGVIRKSNNFIALALKIKEPRNKESLFFMSVMELR
                     DLLIALESRLHQKHKLDAAARLQYEQARDKVIKKMAENIPEILVDELKNADINRRVNT
                     LELTDNQGENLTFVLTLHDGSKCELVVNELQIEMLARAIIHAINNAEMRELALRITSL
                     LDFLPLYDVDCQENGNLEYDTYSQPEWKHNLFDHYLAVLYRFKDESGKEQFSGAVVKT
                     REATPGKEVEAITRRMLDFSPRLKKLAGVPCQVYVRTVAANNAQPLTQDQCLRALHNL
                     RVQSTSKTAPQAK"
     gene            complement(10842..11195)
                     /locus_tag="JN125_001634"
     CDS             complement(10842..11195)
                     /locus_tag="JN125_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418568.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4156 domain-containing protein"
                     /protein_id="HAY8871452.1"
                     /translation="MHVKYLAGIVGAALLMAGCSSSNELSAAGQSVRIVDEQPGAECQ
                     LIGTATGKQSNWLSGQHGEEGGSMRGAANDLRNQAAAMGGNVIYGISSPSQGMLSSFV
                     PTDSQIIGQVYKCPN"
     gene            complement(11333..12979)
                     /gene="groL"
                     /locus_tag="JN125_001635"
     CDS             complement(11333..12979)
                     /gene="groL"
                     /locus_tag="JN125_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120975.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HAY8871453.1"
                     /translation="MAAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSF
                     GAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITE
                     GLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGK
                     LIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESP
                     FILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAV
                     KAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIID
                     GVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEK
                     KARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAP
                     LRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAA
                     SVAGLMITTECMVTDLPKNDAADLGAAGGMGGMGGMGGMM"
     gene            complement(13023..13316)
                     /locus_tag="JN125_001636"
     CDS             complement(13023..13316)
                     /locus_tag="JN125_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004391824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HAY8871454.1"
                     /translation="MNIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVG
                     NGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVEA"
     gene            13592..14848
                     /gene="yjeH"
                     /locus_tag="JN125_001637"
     CDS             13592..14848
                     /gene="yjeH"
                     /locus_tag="JN125_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-methionine/branched-chain amino acid
                     transporter"
                     /protein_id="HAY8871455.1"
                     /translation="MSGLKQELGLAQGIGLLSTSLLGTGVFAVPALAAQVAGNNSLWA
                     WPVLIILVFPIAIVFAILGRHYPSAGGVAHFVGMAFGSRLERVTGWLFLSVIPVGLPA
                     ALQIAAGFGQAMFGWHSWQLLLAELGTLALVWYIGTRGASSSANLQTVIAGLIVALIV
                     AIWWAGDIKPANIPFPAPGNIELTGLFAALSVMFWCFVGLEAFAHLASEFKNPERDFP
                     RALMIGLLLAGLVYWGCTVVVLHFDAYGEKMAAAASLPKIVVQLFGVGALWIACVIGY
                     LACFASLNIYIQSFARLVWSQAQHNPDHYLARLSSRHIPNNALNAVLGCCVVSTLVIH
                     ALEINLDALIIYANGIFIMIYLLCMLAGCKLLQGRYRLLAVVGGLLCVLLLAMVGWKS
                     LYALIVLAGLWLLLPKRKTPENGITT"
     gene            complement(14864..15340)
                     /gene="fxsA"
                     /locus_tag="JN125_001638"
     CDS             complement(14864..15340)
                     /gene="fxsA"
                     /locus_tag="JN125_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418564.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein FxsA"
                     /protein_id="HAY8871456.1"
                     /translation="MRWLPFIAIFLYVYIEISIFIQVAHVLGVLLTLVLVIFTSVIGM
                     SLVRNQGFKNFVLMQQKMAAGENPAAEMIKSVSLIIAGLLLLLPGFFTDFLGLLLLLP
                     PVQKHLTVKLMPHLRFSRMPGGGFSAGTGGGNTFDGEYQRKDDERDRLDHKDDRQD"
     gene            15677..17113
                     /gene="aspA"
                     /locus_tag="JN125_001639"
     CDS             15677..17113
                     /gene="aspA"
                     /locus_tag="JN125_001639"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313147.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HAY8871457.1"
                     /translation="MSNNIRIEEDLLGTREVPADAYYGVHTLRAIENFYISNNKISDI
                     PEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGA
                     GTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSL
                     IKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNI
                     QRTAELLLEVNLGATAIGTGLNTPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGA
                     YVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPE
                     VVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQAMFESVHILTNACYNLLEKCIN
                     GITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTE
                     AELDDIFSVQNLMHPAYKAKRYTDESEQ"
     gene            17231..18532
                     /locus_tag="JN125_001640"
     CDS             17231..18532
                     /locus_tag="JN125_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HAY8871458.1"
                     /translation="MLVVELIIVLLAIFLGARLGGIGIGFAGGLGVLVLAAIGVKPGN
                     IPFDVISIIMAVIAAISAMQVAGGLDYLVHQTEKLLRRNPKYITILAPIVTYFLTIFA
                     GTGNISLATLPVIAEVAKEQGVKPCRPLSTAVVSAQIAITASPISAAVVYMSSVMEGH
                     GISYLHLLSVVIPSTLLAVLVMSFLVTMLFNSKLSDDPIYRKRLEEGLVELRGEKQIE
                     IKSGAKTSVWLFLLGVVGVVIYAIINSPSMGLVEKPLMNTTNAILIIMLSVATLTTVI
                     CKVDTDNILNSSTFKAGMSACICILGVAWLGDTFVSNNIDWIKDTAGEVIQGHPWLLA
                     VIFFFASALLYSQAATAKALMPMALALNVSPLTAVASFAAVSGLFILPTYPTLVAAVQ
                     MDDTGTTRIGKFVFNHPFFIPGTLGVALAVCFGFVLGSFML"
     gene            18648..18986
                     /gene="cutA"
                     /locus_tag="JN125_001641"
     CDS             18648..18986
                     /gene="cutA"
                     /locus_tag="JN125_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent cation tolerance protein CutA"
                     /protein_id="HAY8871459.1"
                     /translation="MLDEKSSNTASVVVLCTAPDEATAQDLAAKVLAEKLAACATLIP
                     GATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTD
                     YLSWLNASLR"
     gene            18962..20659
                     /locus_tag="JN125_001642"
     CDS             18962..20659
                     /locus_tag="JN125_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HAY8871460.1"
                     /translation="MAQRIFTLILLLCSTSVFAGLFDAPGRSQFVPADQAFTFDFQQN
                     QHDLNLTWQIKDGYYLYRKQIRITPEHAKIADVQLPQGVWHEDEFYGKSEIYRDRLTL
                     PVTINQASAGATLTVTYQGCADAGFCYPPETKTVPLSEVVANNAASQPVSVSQQEQHT
                     AQLPFSALWALLIGIGIAFTPCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMA
                     LTYTALGLVVAAAGLQFQAALQHPYVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTRLT
                     LMSNRQQGGSPGGVFVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL
                     GMGLPLMLITVFGNRLLPKSGPWMEQVKTAFGFVILALPVFLLERVIGDVWGLRLWSA
                     LGVAFFGWAFITSLQAKRGWMRVVQIILLAAALVSVRPLQDWAFGATHTAQTQTHLNF
                     TQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQA
                     NITANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQP"
     gene            20696..21271
                     /locus_tag="JN125_001643"
     CDS             20696..21271
                     /locus_tag="JN125_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HAY8871461.1"
                     /translation="MQREDVLGEALKLLELQGIANTTLEMVAERVDYPLDELRRFWPD
                     KEAILYDALRYLSQQIDVWRRQLMLDETQTAEQKLLARYQALSECVKNNRYPGCLFIA
                     ACTFYPDPGHPIHQLADQQKSAAYDFTHELLTTLEVDDPAMVAKQMELVLEGCLSRML
                     VNRSQADVDTAHRLAEDILRFARCRQGGALT"
     gene            21378..21453
                     /locus_tag="JN125_001644"
     tRNA            21378..21453
                     /locus_tag="JN125_001644"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:21411..21413,aa:Phe,seq:gaa)
     gene            21651..22622
                     /locus_tag="JN125_001645"
                     /pseudo
     CDS             21651..22622
                     /locus_tag="JN125_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311870.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
     gene            22760..>22949
                     /locus_tag="JN125_001646"
     CDS             22760..>22949
                     /locus_tag="JN125_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000878026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY8871462.1"
                     /translation="MKYTPVGVDIAKHVIQIHFINEHTGEVVDKQLRRQDFLTFFGNR
                     EPCLIGMEACGGSQHWARK"
BASE COUNT         5708 a         5903 c         5707 g         5631 t
ORIGIN      
        1 gaatggaata aagaataaca atgcagaaaa tatataaaag ggaatcgcac tataacccat
       61 taagtaataa gccgatgggc tattggcaaa tccaaatacg gaagtaaaga tcatcaatat
      121 gagtcctatc agactcatct tttttatcgt gtgaggcatg aaaccatcct tcatttcagc
      181 gcgtgtataa cacgtgccca ctgaactgca ctgcgcaaca ttgagcaggc agcgtaaaaa
      241 ccaatacaga attgataccc ggatgatatc aaatatccag tcttaaattg tggcctttaa
      301 cggaaaaatg aaaatatatg ctacagaatg gcgcttatca cgccattctt cgctgttaat
      361 tcagtaattt ttcagaatta tgcccggtca acgctaaagg cgatgacttc agccagtgtc
      421 tccgcgccca gcgccaacat caccagacga tcaacaccta atgccacgcc ggaacagtca
      481 ggcataccga ctttcaaggc ttcaatcaga ttctggtcaa tggggtgctg cggcaaaccg
      541 cgcgccgcgc gcttacggtt atcttgttca aagcgttgtt gctgctcacg ggcatccgtt
      601 aattcatgga aaccattcgc cagctcaata cctttataat aaacctcaaa gcgttcagcg
      661 acccgatgat cttcggtact gatttgcgcc agtgatgcct ggctggctgg aaagtggtac
      721 acaaaggtcg gtttttcttt gccaatattt ggctctacgc caaaggtaaa cagcaattgt
      781 agcaacgtgt cgcggtcttc ttcggtatca gcaacgttac tcaaatccag tttcgctgcg
      841 acttcccgca gttgcgtttt gtcggcagag agcgggtcaa tttccagata acgcaagaaa
      901 gcttgttgat aagaaaggct ttctgctgcc gggcagtcca gcacctgttg taagagatcg
      961 tccacctcgt tcatcaaccg gtacatatca tagtgcggtc gataccactc aagcatagtg
     1021 aactcagggt tgtgataacg ccccatctct tcattacgga agctgcggca cagctggaat
     1081 accggcccac aaccggcaac cagcaggcgt ttcatatggt attccgggct ggtcattaac
     1141 cagagattca tcccctgcga atgcccgggg ccaacgaaac gtgtctcaaa cgggaccaaa
     1201 tgaatatcgg ttaccgtcgc ctggctcata caaggcgtct ccacctccag cactccacga
     1261 tcagcaaaga aacgacggat ctccgccata atcgccgcgc gttttaataa gttaggaatg
     1321 gatgcgctcg gctgccagga tgccgtttcg ctcatagtta aatctccagt ttttgacaag
     1381 ggcacgaagt ctactcgcaa cgcgacggcg agacaaattt tacgcaggaa tcaaacagcg
     1441 gtgggcagtg actaaaaaaa gcacgatctg atggtttagt aattaaatga atcatcttca
     1501 gtgataattt agccctcttg cgcactaaaa aaatcgatct cgtcaaattt cagacttatc
     1561 catcagacta tactgttgta cctataaagg agcagtggaa tagcgttcgc agaccgtaac
     1621 tttcaggcac ttaccctgaa gtacggggct gtgggataaa aacaatctgg aggaatgtcg
     1681 tgcaaacctt tcaagccgat cttgccattg taggcgccgg tggcgcggga ttacgtgctg
     1741 caattgctgc cgcgcaagca aatccaaatg caaaaatcgc actaatctca aaagtatacc
     1801 cgatgcgtag ccataccgtt gctgcagaag ggggctccgc cgctgtcgcg caggatcatg
     1861 acagcttcga atatcacttt cacgatacag tagcgggtgg cgactggttg tgtgagcagg
     1921 atgtcgtgga ttatttcgtc caccactgcc caaccgaaat gacccaactg gaactgtggg
     1981 ggtgcccatg gagccgtcgc ccggatggta gcgtcaacgt acgtcgcttc ggcggcatga
     2041 aaatcgagcg cacctggttc gccgccgata agaccggctt ccatatgctg cacacgctgt
     2101 tccagacctc tctgcaattc ccgcagatcc agcgttttga cgaacatttc gtgctggata
     2161 ttctggttga tgatggtcat gttcgcggcc tggtagcaat gaacatgatg gaaggcacgc
     2221 tggtgcagat ccgtgctaac gcggtcgtta tggctactgg cggtgcgggt cgcgtttatc
     2281 gttacaacac caacggcggc atcgttaccg gtgacggtat gggtatggcg ctaagccacg
     2341 gcgttccgct gcgtgacatg gaattcgttc agtatcaccc aaccggtctg ccaggttccg
     2401 gtatcctgat gaccgaaggc tgccgtggtg aaggcggtat tctggtcaac aaaaatggct
     2461 accgttatct gcaagattac ggcatgggcc cggaaactcc gctgggcgag ccgaaaaaca
     2521 aatatatgga actgggtcca cgcgacaaag tttctcaggc cttctggcac gaatggcgta
     2581 aaggcaacac catctccacg ccgcgtggcg atgtggttta tctcgacttg cgtcacctcg
     2641 gcgagaaaaa actgcatgaa cgtctgccgt tcatctgcga actggcgaaa gcgtacgttg
     2701 gcgtcgatcc ggttaaagaa ccgattccgg tacgtccgac cgcacactac accatgggcg
     2761 gtatcgaaac cgatcagaac tgtgaaaccc gcattaaagg tctgttcgcc gtgggtgaat
     2821 gttcctctgt tggtctgcac ggtgcaaacc gtctgggctc caactccctg gcggaactgg
     2881 tggtcttcgg ccgtctggcc ggtgaacaag cgacagagcg tgcagcaact gccggtaatg
     2941 gcaacgaaga ggcaattgaa gcgcaggcag ctggcgttga acaacgtctg aaagatctgg
     3001 ttaaccagga tggcggcgaa aactgggcga agatccgcga cgaaatgggc ctagcaatgg
     3061 aagaaggttg cggtatctac cgtacgccgg aactgatgca gaaaaccatc gacaagctgg
     3121 cagagctgca ggaacgcttc aagcgcgtgc gcatcaccga cacctccagc gtgttcaaca
     3181 ccgacctgct ctacaccatt gaactgggcc acggtctgaa cgttgctgaa tgtatggcgc
     3241 actccgcaat ggcacgtaaa gagtcccgcg gcgcacacca gcgtctggac gaaggttgca
     3301 ccgagcgtga cgacgtcaac ttcctcaaac acaccctcgc cttccgcgat gctgatggca
     3361 cgactcgcct ggagtacagc gacgtgaaga ttactacgct gccgccagct aaacgcgttt
     3421 acggtggcga agcggatgca gccgataagg cggaagcagc caataagaag gagaaggcga
     3481 atggctgaga tgaaaaacct gaaaattgag gtggtgcgct ataacccgga agtcgatacc
     3541 gcaccgcata gcgcattcta tgaagtgcct tatgacgcaa ctacctcatt actggatgcg
     3601 ctgggctaca tcaaagacaa cctggcaccg gacctgagtt accgctggtc ctgccgtatg
     3661 gcgatttgtg gttcctgcgg catgatggtt aacaacgtgc caaaactggc atgtaaaacc
     3721 ttcctgcgtg attacaccga cggtatgaag gttgaagcgt tagctaactt cccgattgaa
     3781 cgcgatctgg tggtcgatat gacccacttc atcgaaagtc tggaagcgat caaaccgtac
     3841 atcatcggca actcccgcac cgcggatcag ggtactaaca tccagacccc ggcgcagatg
     3901 gcaaagtatc accagttctc cggttgcatc aactgtggtc tgtgctacgc cgcgtgcccg
     3961 cagtttggcc tgaacccaga gttcatcggt ccggctgcca ttacgctggc gcatcgttat
     4021 aacgaagata gccgcgacca cggtaagaag gagcgtatgg cgcagttgaa cagccagaac
     4081 ggcgtatgga gctgtacttt cgtgggctat tgctccgaag tctgcccgaa acacgtcgat
     4141 ccggctgcgg ccattcagca gggcaaagta gaaagttcga aagactttct tatcgcgacc
     4201 ctgaaaccac gctaaggagt gcaacatgac gactaaacgt aaaccgtatg tacggccaat
     4261 gacgtccacc tggtggaaaa aattgccgtt ttatcgcttt tacatgctgc gcgaaggcac
     4321 ggcggttccg gctgtgtggt tcagcattga actgattttc gggctgtttg ccctgaaaaa
     4381 tggcccggaa gcctgggcgg gattcgtcga ctttttacaa aacccggtta tcgtgatcat
     4441 taacctgatc actctggcgg cagctctgct gcacaccaaa acctggtttg aactggcacc
     4501 gaaagcggcc aatatcattg taaaagacga aaaaatggga ccagagccaa ttatcaaaag
     4561 tctctgggcg gtaactgtgg ttgccaccat cgtaatcctg tttgttgccc tgtactggta
     4621 aggagcctga gatgattaat ccaaatccaa agcattctga cgaaccggta ttctggggcc
     4681 tcttcggggc cggtggtatg tggagcgcaa ttattgcgcc ggtgatgatc ctgctggtgg
     4741 gtattctgct gccactgggg ctgtttccgg gtgatgcgct gagctacgag cgcgttctgg
     4801 cgttcgcgca gagcttcatt ggtcgcgtat tcctgttcct gatgatcgtt ctgccgctgt
     4861 ggtgtggttt acaccgtatg caccacgcga tgcacgatct gaaaattcac gtgcctgcgg
     4921 gcaaatgggt tttctacggt ctggctgcta tcctgacagt tgtcacgctg attggtatcg
     4981 ttacaatcta acgtatcgcc aatgtaaatc cggcccgcct atggcgggcc gttttgtatg
     5041 gaaaccagac cttatgttca aaacgacgct ctgcgcctta ttaattaccg cctcttgctc
     5101 cacatttgct gcccctcaac aaatcaacga tattgtgcat cgcacaatta ccccgcttat
     5161 agagcaacaa aagatccccg gtatggcggt ggcggtaatt tatcagggta aaccttatta
     5221 ctttacctgg ggctatgcgg acatcgccaa aaagcagccc gtcacacagc aaacgttgtt
     5281 tgagttaggt tcggtcagca aaacatttac gggcgtgctt ggtggcgacg ctattgctcg
     5341 aggggaaatc aagttaagcg atcccgcaac aaaatactgg cctgaactta ccgctaaaca
     5401 gtggaatggg atcacactat tacatcttgc gacctacacc gctggcggcc tgccattgca
     5461 gatgccggat gaagtgaaat cctcaagcga cttgctgcgc ttctatcaaa actggcagcc
     5521 tgcatgggct ccaggaacac aacgtctgta tgccaactcc agtatcggtt tgttcggcgc
     5581 actggctgtg aagccgtctg gtttgagttt tgagcaggcg atgcaaactc gtgtcttcca
     5641 gccactcaaa ctcaaccata cgtggattaa tgtaccgccc gcagaagaaa agaattacgc
     5701 ctggggatat cgcgaaggca aggcagttca tgtttcgcca ggggcgttag atgctgaagc
     5761 ttatggtgtg aagtcgacca ttgaagatat ggcccgctgg gtgcaaagca atttaacccc
     5821 ccttgatatc aatgagaaaa cgcttcaaca agggatacaa ctggcacaat ctcgctactg
     5881 gcaaatcggc gatatgtatc agggcctggg ctgggaaatg ctggactggc cggtcaatcc
     5941 tgacagcatc attaacggca gtgacaataa aattgcactg gcagcacgcc cggtaaaagc
     6001 gattaagccc ccaactcctg cagtacgcgc atcatgggta cataaaacgg gggcgaccgg
     6061 cggatttggt agctatgtcg cgtttattcc agaaaaagag ctgggtatcg tgatgctggc
     6121 taacaaaaac tatcccaatc cagcgagagt cgccgccgcc tgtcagattc tcaacgctct
     6181 acagtaaaat ttcatcgggt ccgaattttc ggaccttttc tgcgcttttc cttgctgtca
     6241 tctacactta gaaaaaaacc agtaaggaaa catttatgcg cctgctccct ctcgttgccg
     6301 cagcgacagc tgcatttctg gtcgttgcct gcagttctcc tacgccgccg cgtggcgtga
     6361 cagtagtgaa taatttcgac gctaaacgct atctcggtac ctggtatgag attgcccgtt
     6421 ttgatcaccg ttttgaacgt ggactggaaa aagtcaccgc aacatacagt ctgcgtgatg
     6481 gcggcggcct gaatgtcatc aataaaggct ataaccctga cagagaaatg tggcagcaga
     6541 gtgaagggaa agcgtacttt accggcgcac caacacgcgc tgcgctgaaa gtgtcattct
     6601 ttggtccttt ctatggcggt tataacgtca ttgcacttga tcgggaatac cgccatgcgc
     6661 tggtttgcgg cccggaccgc gactacctgt ggatactctc ccgcacgcca accatttctg
     6721 acgaagtgaa acaggagatg ctggcagtcg cgacccggga agggtttgat gtcagtaagt
     6781 ttatttgggt acagcagccc ggtagttagt gagtgctgag tttcagacca ataatcccca
     6841 atacgattaa cgccagactc gccaggcgca tcgggttagc ggactcaccg agcagcacaa
     6901 tgccggtgat agccgcgccg actgcgccaa tacccgtcca cacggcataa gccgtcccta
     6961 ctggtaacga tttcatcgcc caggcaagta gcgccatact gacaatcatc gccgtcacgg
     7021 taataacact cggcgtcaaa cgactaaagc cgtgggtata tttcaggcca acggcccata
     7081 ccacttccag cagaccagca ataactaaga taatccagga catatcaggc tccggagaat
     7141 tggggccgtc cccggtgaaa agacgcgttt gcaggtcgtc ctgcaaagct gatggttgaa
     7201 cggatatttt gccaggtggc aggggaatgt caactattac cttagtgact atcgcagaaa
     7261 aaacaaacgg cacgacacag ctgtcgtacc gttattgctt attgctattg ctgcgctttc
     7321 gttgctgcgc cagaaatcgc gttaccgcca tcagaaatgt cttcaccaac gccacgcgtg
     7381 gtgttgcagg cagttaatac tgttgaaagc accagaacag aaaagatcgc tgcaattgtc
     7441 ttcttcacca taacgtcttc cttttaggta atgttattta tgtttgccta tagcaaatta
     7501 ataatagaca acatcgccaa aaatgacgga aatctgatga tttttcggaa gagaagaaaa
     7561 attagctggc agcgcgagag atggagttgc cgagatgttt gatgtcttcg ccgaaaccgc
     7621 gagcggtgtt acagcccgtg agcagcgtac tagcaagcaa aacaagaacg ataaggcgtt
     7681 tcatcatctc tgatctgaat aagtgatggt gcagcctgca ggccgcacca caaccgcatt
     7741 acttcacgcg agagacgtat tcaccagagc gggtatccac tttgatgact tcgccgattt
     7801 gtacgaacag cggaacctta accacagcgc cagtagacag ggtagccggt ttgccgccag
     7861 tacctgcggt atcacctttc aggcccggat cggtatcaac gatttccagt tcaacgaagt
     7921 tcggcggagt aacggagatc ggctgaccat tccacagagt tacgatacac tctgcctgat
     7981 ccagcagcca tttagcgtta tcgccaattg cttttgcatc agcagacagc tgctcgaaag
     8041 tttcgttgtt catgaagtgc cagaactcac cgtcgttgta caggtaagtc aggttcatat
     8101 cgacaacatc agcgccttca gcggaatcag tagatttgaa ggttttttct acgcgagtac
     8161 cggtcagcag acgacgcagt ttaacgcgag caaatgcctg gcctttaccc ggttttacga
     8221 attcactcgc ttcaaccgcg taaggttcgc cgtctaacat gattttaaga ccagcacgaa
     8281 aatcgttgct atagtacgtt gccataaggc cctctgaaat ttgttaattg gtagctaagc
     8341 cacaaaatgg cacatattgt aaccctaaat accccatcca gagaagattg gttaacgcaa
     8401 cttgccgatg ttgtgaccga tcctgatgaa cttctgcgtc ttttgaatat agacgcggac
     8461 gaaaaactgt tggccggacg cagcgccaaa aagctgtttg ccctgcgtgt gccccgctca
     8521 tttatcgatc gcatggagaa aggcaatccg gacgatcctc ttttgcgtca ggtacttacc
     8581 tcgcaagatg agtttgtcgt cgcgtccgga ttctccaccg acccactgga agaacagcac
     8641 agcgtagtgc ctggtttgtt gcataaatac cacaaccggg cgcttttgct ggtcaaaggc
     8701 ggctgcgcgg taaattgccg ctattgcttc cgtcgccact tcccctatgc cgaaaatcag
     8761 ggcaacaagc gtaactggca gactgcactt gagtatgttg ctgcgcatcc ggaactggac
     8821 gagatgattt tctccggcgg cgatccgctg atggcgaaag atcacgagct ggactggttg
     8881 ctcacacaac tggaagccat cccgcatatc aaacgtctgc ggattcacag ccgtctgccg
     8941 attgtgatcc cggcacgcat cacagatgcg ctggttgaac gcttttcaca ttctacgctg
     9001 caaatcctgc tggtgaatca catcaaccat gccaatgaga tagatgaaac attccgtcag
     9061 gcgatggcta agttgcgccg ggtaggcgtt actttgctga accagagcgt tctgttacgt
     9121 gatgtgaacg ataacgcaca aacgctggca aacctgagta atgcgttgtt cgatgccggc
     9181 gtgatgccgt attacctgca tgtgctcgat aaagtacagg gcgcggcgca ttttatggtg
     9241 agtgatgacg aagcacggca gattatgcgt gagttgctga cattggtgtc gggatatctg
     9301 gtgccgaaac tggcgcgaga aattggcggc gaacccagca aaacgccgct ggatctccag
     9361 ctacgccagc agttactgat taaacaggga agttaaacat taaaattgcc tgatgcgcta
     9421 cgcttatcag gcctacatcg tgcattgaaa ttgaatggat ttgcaatgaa ctgtaggccg
     9481 gataaggcgt ttacgccgca tccggcaaga gcaacaaacg caagtacagc aacctgtcat
     9541 taaactgaga aatttaatct ttgcccgttg cataaccttt aattattcat atgcattgct
     9601 gttgttactt tttatatagc taacaccaat aattaacctt tcttttctgt ttatatagag
     9661 tgagcacggc tatttatgtt attttaacaa ctattactac caagcccatt tatctggctt
     9721 ataaattaaa attaattatt taattgagaa atggttaggg agaacctaca tggccataag
     9781 catcaagggt gttaataccg gtgttattcg caagagtaat aatttcattg cactggcgct
     9841 gaaaattaaa gaacctcgca ataaagaatc gttgttcttt atgtctgtca tggaactgcg
     9901 cgacctgctg attgcgctgg aaagtcgtct gcatcaaaag cataaactgg atgctgctgc
     9961 acgccttcag tatgagcaag ctcgcgataa agtcattaag aaaatggcag aaaacatccc
    10021 agaaattctg gttgatgagc ttaaaaatgc cgatattaat cgtcgggtta acacgctgga
    10081 acttaccgat aatcaaggcg aaaatcttac cttcgtatta acgctacatg acggtagcaa
    10141 atgtgagtta gtcgtcaatg agttgcagat tgaaatgcta gcgcgagcaa tcattcatgc
    10201 aattaataat gcggaaatgc gtgaactggc attacgtatt acctcactgt tagatttcct
    10261 gccgttatat gacgttgact gccaggaaaa tggcaatctg gaatatgaca cctattccca
    10321 accggaatgg aaacataact tgttcgacca ttatctggcg gtgctttacc gctttaaaga
    10381 tgaaagtggc aaagaacaat ttagcggcgc agtggtgaaa acgcgtgaag caacgccggg
    10441 taaagaagta gaggcgatca ctcgccgaat gcttgatttc agcccacgac tgaaaaaact
    10501 cgcgggtgtg ccatgtcagg tctatgttcg caccgtagcg gcgaataacg cccaaccgct
    10561 aacccaggat caatgcttac gcgcgctgca taacttacgt gttcaatcca ccagcaaaac
    10621 tgcaccacag gcgaaataat ctcatctttg ctaatgcgag gctggagcca tccagcctga
    10681 aatgactgat aacgtgatcg ttggtcatgc cggatgcggc gtaaacgcct tatccggcct
    10741 acaaattctc aagcattcaa tcagttgcaa tgcctgctgt aggcctgata agcgaagcgc
    10801 atcaggcaat aatacgtttg tcacccagcc tctggatcac atcagttcgg gcacttataa
    10861 acctgaccga taatctggct atccgtcggg acaaaactgg acaacattcc ctgcgacggg
    10921 ctgctgatgc cataaatcac gttaccgccc attgcagccg cctggttgcg cagatcgttt
    10981 gctgcgccgc gcatagaacc gccctcttct ccgtgttgcc cggaaagcca gttgctttgc
    11041 ttacctgtcg cagtaccaat cagctggcac tctgcgcctg gctgctcgtc cacaatgcgt
    11101 acactctgac cggcagcact caattcgttg ctggagctac aacccgccat cagtagcgcg
    11161 gcaccgacaa tccctgctaa gtattttacg tgcatgttat tccccataat caatgagctg
    11221 gacgccactc gcgtcgtccg tgtctgaatc ttatactaga aagatgacca aaagaaaaac
    11281 ccccagacat ttctgcccgg gggtttgttt atttctgcga ggtgcagggc aattacatca
    11341 tgccgcccat gccacccatg ccgcccatac cgccagcagc gcctaagtca gctgcatcgt
    11401 ttttcggcag gtcggtaacc atgcactcgg tggtgatcat caggccagcc acagaagccg
    11461 cgtactgcag agcagaacgg gttactttgg ttggatccag gatacccatg tcgatcatgt
    11521 tgccgtattc ttcggttgct gcgttgtaac cgtagttgcc gtcgccgcct ttaacagtgt
    11581 tagcaacaac agacggttct tcgccgcagt tcaatacgat ctgacgcagc ggagcttcca
    11641 ttgcacgcag tgcaactttg atacccacgt tctggtcttc gttctgacca cgcaggtcag
    11701 ccagtttaga cgctacgcgg atcagcgcaa caccaccacc agcaaccacg ccttcttcta
    11761 ccgcagcacg ggtcgcgtgc agggcatctt caacgcgtgc ttttttctct ttcatttcaa
    11821 cttcggtagc agcacctact ttgataactg caacgccgcc tgccagtttc gctacgcgct
    11881 cctgcagttt ttcacggtcg tagtcagaag ttgcttcttc aatctgctga cggatctgag
    11941 caacacggcc ctggattgca gcttcttcac ccacgccatc aatgatggtg gtggtgtctt
    12001 tgttgatcac aacacgttta gcctgaccca ggtcttccag ggttgctttt tccagctcca
    12061 taccgatctc ttcagagatt acggtaccgc cagtcagggt tgcgatatcc tgcagcatag
    12121 ctttacggcg atcgccgaag cccggagctt taaccgcagc aactttcacg atgccacgca
    12181 tggtgttaac aaccagagtt gccagcgctt cgccttcaac atcttcagcg atgatcagca
    12241 gcggtttacc tgctttagca acggcttcca gaaccggcag catttcgcgg atgttggaga
    12301 ttttcttgtc agccagcagg atgaacgggc tttccagttc tactgcgcca gtttccggct
    12361 tgttgatgaa gtaaggagac aggtagccac ggtcgaactg cataccttca accacgtcca
    12421 gttcgtcctg cagaccggta ccgtcttcaa cggtgataac gccttcttta ccgactttgt
    12481 ccatcgcttc agcgatcagt ttacctacgg tttcgtcgga gttagcggag atggtaccaa
    12541 cctgagcaat cgctttagag tcagagcatg gtacggacag cgctttcagt tcttcaactg
    12601 cagcggtaac agctttgtcg ataccacgtt tcaggtccat cgggttcatg cccgcagcaa
    12661 ctgctttcag accctcagtg atgatagcct gagccagtac ggttgcagtg gtggtaccgt
    12721 cgcctgcagc gtcgttcgct ttagaggcaa cttctttcac catctgcgca cccatatttt
    12781 cgaacttgtc ttccagttcg atttcacgag caacggaaac accatctttg gtgatggtcg
    12841 gtgcaccgaa agatttatcc agaactacgt tacggccttt cggaccgagg gtaactttca
    12901 ctgcatctgc cagtacgttt acgccgcgca gcattttcac acgagcgtcg ttaccgaatt
    12961 ttacgtcttt agctgccatt atctttattc cttaaattcg tatgttcagt gtcgtgcgag
    13021 gattacgctt caacaattgc cagaatgtcg ctttcggaca tgatcaacac ttcttcattg
    13081 tcgatcttct cagatttcac accgtagcca tcgttgaaaa taacgatgtc gccaactttc
    13141 acatccagcg gcttcacttc gccattttca aggatacggc cattgccgac agccagcact
    13201 tcgccgcggg tggatttagc cgctgcagag ccggtcagaa cgatgccgcc agcagattta
    13261 gtttcaactt ctttacgctt gacgatcacg cgatcatgca atggacgaat attcattgat
    13321 aactctcctt tgagaaagtc cgtatctgtt atgggtgacg ccggagctta cgtggtttcc
    13381 cggctggtga ccagagaaat ggggatgagg attcgcccct tcaaggggga aaaagaaaaa
    13441 aaattctgat cagcacaaaa tcgggtgaaa accctgattc acctcacatt tcatcgcaat
    13501 ttcttcatcg ccgtcataag cgaatctgat tgtgctacca tcgaaaatct acgcagttgc
    13561 ccaaaatttg ggcgcaatcg gatatcaacc catgagtgga ctcaaacaag aactggggct
    13621 ggcccagggc attggcctgc tatcgacgtc attattaggc accggcgtgt ttgccgttcc
    13681 tgcgttagct gcacaggtag caggcaataa cagcctgtgg gcgtggcccg ttttgattat
    13741 cttagtgttc ccgattgcga ttgtgtttgc gattctgggt cgccactatc ccagcgcagg
    13801 cggtgtcgcg cacttcgtcg gtatggcgtt tggttcgcgg cttgagcgag tcaccggctg
    13861 gttgttttta tcggtcattc ccgtgggttt gccagccgcg ctacaaattg ccgccgggtt
    13921 cggccaggca atgtttggct ggcatagctg gcaactgttg ttggcagaac tcggtacgct
    13981 ggcgctggtg tggtatatcg gtactcgcgg tgccagttcc agtgctaatc tacaaaccgt
    14041 tattgccgga cttatcgtcg cgctgattgt cgctatctgg tgggcgggcg atatcaaacc
    14101 tgcgaatatc cccttcccgg cacctggtaa tatcgaactt accgggttat ttgctgcgtt
    14161 atcagtgatg ttctggtgtt ttgtcggtct ggaagcattt gcccatcttg cctcggaatt
    14221 taaaaatcca gagcgtgatt ttcctcgcgc attgatgatt ggtctgctgc tggcaggatt
    14281 agtctactgg ggctgtacgg tagtcgtctt acacttcgac gcctatggtg aaaaaatggc
    14341 ggcggcagca tcgcttccaa aaattgtagt gcaactgttc ggtgtaggag cgttatggat
    14401 tgcctgcgtg attggctatc tggcctgctt tgccagtctc aacatttata tacagagctt
    14461 cgcccgcctg gtatggtcgc aggcgcaaca taatcctgac cactacctgg cacgcctctc
    14521 ttctcgccat atcccgaata atgccctcaa tgcggtgctc ggctgctgtg tggtgagcac
    14581 tttggtgatt catgctttag agatcaatct ggacgctctt attatttatg ccaatggcat
    14641 ctttattatg atttatctgt tatgcatgct ggcaggctgt aaattattgc aaggacgtta
    14701 tcgactactg gcggtggttg gcgggctgtt atgcgttctg ttactggcaa tggtcggctg
    14761 gaaaagtctc tatgcgctga tcgtgctggc gggattatgg ctgttgctgc caaaacgaaa
    14821 aacgccggaa aatggcataa ccacataatc cggcgtttcg acattaatcc tggcgatcgt
    14881 ctttatgatc aaggcggtcg cgctcatcat cctttcgctg gtactcacca tcaaaagtat
    14941 taccgccacc ggtcccggcg ctaaaaccgc cgcctggcat acgagaaaag cgcaaatgcg
    15001 gcatcaactt cactgtcaga tgcttttgca ccggcggtaa taaaagcaga agaccgagga
    15061 agtcggtgaa aaagcccggt aataaaagca gcaaaccggc aatgatcagc gaaacacttt
    15121 taatcatctc cgccgctggg ttttcacccg ccgccatttt ttgctgcatc agcacgaaat
    15181 tcttaaagcc ctggttacgt accagtgaca tcccgataac tgacgtgaat ataaccagca
    15241 cgagggtcag caataccccc aatacatggg caacctgaat aaagattgaa atctcaatat
    15301 agacataaag gaaaatggca ataaaaggta accagcgcaa aggtttctcc tgtaatagca
    15361 gccggtaaaa cccggctacc tgaatgggtt gcgaatcgcg ttcagcttat attgtggtca
    15421 ttagcaaaat ttcaagatgt ttgcgcaact atttttggta gtaatcccaa agcggtgatc
    15481 tatttcacaa attaataatt aaggggtaaa aaccgacact taaagtgatc cagattacgg
    15541 tagaaatcct caagcagcat atgatctcgg gtattcggtc gatgcagggg ataatcgtcg
    15601 gtcgaaaaac attcgaaacc acatatattc tgtgtgttta aagcaaatca ttggcagctt
    15661 gaaaaagaag gttcacatgt caaacaacat tcgtatcgaa gaagatctgt tgggtaccag
    15721 ggaagttcca gctgatgcct actatggtgt tcacactctg agagcgattg aaaacttcta
    15781 tatcagcaac aacaaaatca gtgatattcc tgaatttgtt cgcggtatgg taatggttaa
    15841 aaaagccgca gctatggcaa acaaagagct gcaaaccatt cctaaaagtg tagcgaatgc
    15901 catcattgcc gcatgtgatg aagtcctgaa caacggaaaa tgcatggatc agttcccggt
    15961 agacgtctac cagggcggcg caggtacttc cgtaaacatg aacaccaacg aagtgctggc
    16021 caatatcggt ctggaactga tgggtcacca gaaaggtgaa tatcagtacc tgaacccgaa
    16081 cgaccatgtt aacaaatgtc agtccactaa cgacgcctac ccgaccggtt tccgtatcgc
    16141 agtttactct tccctgatta agctggtaga tgcgattaac caactgcgtg aaggctttga
    16201 acgtaaagct gtcgaattcc aggacatcct gaaaatgggt cgtacccagc tgcaggacgc
    16261 agtaccgatg accctcggtc aggaattccg cgctttcagc atcctgctga aagaagaagt
    16321 gaaaaatatc caacgtaccg ctgaactgct gctggaagtt aaccttggcg caacagcaat
    16381 cggtactggt ctgaacacgc cgaaagagta ctctccgctg gcagtgaaaa aactggctga
    16441 agtcactggc ttcccatgcg taccggctga agacctgatc gaagcgacct ctgactgcgg
    16501 cgcttatgtt atggttcacg gcgcgctgaa acgcctggct gtgaagatgt ccaaaatctg
    16561 taacgacctg cgcttgctct cttctggccc acgtgccggc ctgaacgaga tcaacctgcc
    16621 agaactgcag gcgggctctt ccatcatgcc agctaaagta aacccggttg ttccggaagt
    16681 ggttaaccag gtatgcttca aagtcatcgg taacgacacc actgttacca tggcagcaga
    16741 agcaggtcag ctgcagttga acgttatgga gccggtcatt ggccaggcca tgttcgaatc
    16801 cgttcacatt ctgaccaacg cttgctacaa cctgctggaa aaatgcatta acggcatcac
    16861 tgctaacaaa gaagtgtgcg aaggttacgt ttacaactct atcggtatcg ttacttacct
    16921 gaacccgttc atcggtcacc acaacggtga catcgtgggt aaaatctgtg ccgaaaccgg
    16981 taagagtgta cgtgaagtcg ttctggaacg cggtctgttg actgaagcgg aacttgacga
    17041 tattttctcc gtacagaatc tgatgcaccc ggcttacaaa gcaaaacgct atactgatga
    17101 aagcgaacag taatcgtaca gggtagtaca aataaagaag gcacgtcaga tgacgtgcct
    17161 tttttcttgt gagcagtaac ttaaaaacaa caatctaata tcaacttgtt aaaaaacaag
    17221 gaaggctaat atgctagttg tagaactcat catagttttg ctggcgatct tcttgggcgc
    17281 cagattgggg ggaataggta ttggttttgc aggcggattg ggggtgctgg ttcttgccgc
    17341 tattggcgtt aaacccggta acatcccgtt cgatgtcatt tccattatca tggcggttat
    17401 cgccgctatt tctgccatgc aggttgctgg cggtctggac tatctggttc atcagacaga
    17461 aaagctgctg cgccgtaacc cgaaatacat cacgatcctc gcacctatcg tgacctattt
    17521 cctgacaatc tttgctggta ctggcaacat ctctctggcg acactgccag ttatcgctga
    17581 agttgcgaag gaacaaggcg ttaaaccttg ccgtccgctc tctactgcag tggtatccgc
    17641 gcagattgcg atcaccgcat cgccaatctc agcggcagtg gtttacatgt cttccgtgat
    17701 ggaaggtcat ggcatcagct acctccatct gctctccgtg gtcatcccgt ccaccctgct
    17761 ggcggttctg gtgatgtcct ttctggtcac tatgctgttc aactccaaac tctctgacga
    17821 tccgatttat cgcaagcgtc tggaagaggg cctggttgaa ctgcgcggtg aaaagcagat
    17881 tgaaatcaaa tccggtgcaa aaacgtccgt ctggctgttc ctgctgggcg tagttggcgt
    17941 ggttatctat gcaatcatca acagcccaag catgggtctg gttgaaaaac cgctgatgaa
    18001 caccaccaac gcaatcctga tcatcatgct cagcgttgca actctgacca ccgttatctg
    18061 taaagtcgat accgacaaca tcctcaactc cagcaccttc aaagcaggta tgagcgcctg
    18121 tatttgtatc ctgggtgttg cgtggctggg cgatactttc gtttccaaca acatcgactg
    18181 gatcaaagat accgctggtg aagtgattca gggtcatccg tggctgctgg ccgtcatctt
    18241 cttctttgct tctgctctgc tgtactctca ggctgcaacc gcaaaagcac tgatgccgat
    18301 ggctctggca ctgaacgttt caccgctgac cgctgttgct tctttcgctg cggtgtctgg
    18361 tctgttcatt ctgccgacct acccgacgct ggttgctgcg gtacagatgg atgacacggg
    18421 tactacccgt atcggtaaat tcgtcttcaa ccatccgttc ttcatcccgg gtactctggg
    18481 tgttgccctg gccgtttgct tcggcttcgt gctgggtagc ttcatgctgt aatgatcaat
    18541 cgcggggcgt tcacgccccg ctttctttcc cgccgactaa catccttccc ccgtacgttg
    18601 tatagtgacc tctctcttgc ggttccatct gttcttgcga ggtgtttatg cttgatgaaa
    18661 aaagttcgaa taccgcgtct gtcgtggtgc tatgtacggc accagatgaa gcgacagccc
    18721 aggatttagc tgccaaagtg ctggcggaaa aactggcggc ctgcgcgacc ttgatccccg
    18781 gcgctacctc tctctattac tgggaaggta agctggagca agaatacgaa gtgcagatga
    18841 ttttaaaaac taccgtatct caccagcagg cactgctgga atgcctgaag tctcatcatc
    18901 catatcaaac cccggaactt ctggttttac ctgttacaca cggagacaca gattacctct
    18961 catggctcaa cgcatcttta cgctgatcct gctactttgc agcacttccg tttttgccgg
    19021 attattcgac gcgccgggac gttcacaatt tgtccccgcg gatcaagcct ttacttttga
    19081 ttttcagcaa aaccaacatg accttaatct gacctggcag atcaaagacg gttactacct
    19141 ctaccgtaaa cagatccgca ttacgccgga acacgcgaaa attgccgacg tgcagctgcc
    19201 gcaaggcgtc tggcatgaag atgagtttta cggcaaaagc gagatttacc gcgatcggct
    19261 gacgcttccc gtaaccatca accaggcgag tgcgggagcg acgttaactg tcacctacca
    19321 gggctgtgct gatgccggtt tctgttatcc gccagaaacc aaaaccgttc cgttaagcga
    19381 agtggtcgcc aacaacgcag cgtcacagcc tgtgtctgtt tcgcagcaag agcagcacac
    19441 cgcgcaattg cccttttccg cgctctgggc gttgttgatc ggtattggta tcgcctttac
    19501 gccatgcgtg ctgccaatgt acccactgat ttctggcatc gtgctgggtg gtaaacagcg
    19561 gctctccact gccagagcat tgttgctgac ctttatttat gtgcagggga tggcactgac
    19621 ttacacggcg ctgggtctgg tagttgccgc cgcagggtta cagttccagg cggcgctaca
    19681 gcacccatac gtgctcattg gcctcgccat cgtctttacc ttgctggcga tgtcaatgtt
    19741 tggcttgttt actctacaac tcccctcttc gctgcaaaca cgtctcacgt tgatgagcaa
    19801 tcgccaacag ggcggctcac ctggcggtgt gtttgttatg ggggcgattg ccggacttat
    19861 ctgttcacca tgcaccaccg caccgcttag cgcgattctg ctgtatatcg cccaaagcgg
    19921 gaacatgtgg ctgggcggcg gcacgcttta tctctatgcg ttgggcatgg gcctgccgct
    19981 gatgctaatt accgtctttg gtaaccgctt gctgccgaaa agcggcccgt ggatggaaca
    20041 agtcaaaacc gcgtttggtt ttgtgatcct cgcactgccg gtcttcctgc tggagcgagt
    20101 gattggtgat gtatggggat tacgcttgtg gtcggcgctg ggtgtcgcat tctttggctg
    20161 ggcctttatc accagcctac aggctaaacg cggctggatg cgcgtggtgc aaataatcct
    20221 gctggcagcg gcattggtta gcgtgcgccc acttcaggat tgggcatttg gtgcgacgca
    20281 taccgcgcaa actcagacgc atctcaactt tacacaaatc aaaacggtag atgagttaaa
    20341 tcaggcgctc gttgaagcca aaggcaaacc ggtgatgtta gatctttatg ccgactggtg
    20401 cgtcgcctgt aaagagtttg agaaatacac cttcagcgac ccgcaggtac aaaaagcgtt
    20461 agcagacacg gtcttacttc aggccaacat cacggccaac gacgcacaag atgtggcgct
    20521 gttaaagcat cttaatgtcc ttggcctacc gacaattctc ttttttgacg gacaaggcca
    20581 ggagcatcca caagcacgcg tcacgggctt tatggatgct gaaaccttca gcgcacattt
    20641 gcgcgatcgc caaccgtgaa cgacacttac agcgggaaag acggaggaaa atagcgtgca
    20701 acgtgaagat gtactgggag aagccctgaa attattagaa ttacaaggga ttgccaacac
    20761 cacgctggag atggttgctg aacgtgtgga ttatccactg gacgagctac gccgcttctg
    20821 gccagacaaa gaggcaatcc tctacgatgc gctgcgttat cttagccaac agatagatgt
    20881 ctggcgtcgt cagctgatgc tggacgaaac gcaaaccgcc gaacaaaagc tgctggcacg
    20941 ttatcaggcg ttatcggagt gcgttaaaaa caaccgctat ccgggctgtc tatttatcgc
    21001 tgcctgtacg ttttatcccg atcctggcca ccctattcat caactggccg atcagcaaaa
    21061 aagcgcggcc tacgatttca cccacgaact gttaaccaca ctggaagttg acgatccggc
    21121 gatggtagca aagcagatgg aactggtgct ggaaggctgt ttaagccgaa tgctggtgaa
    21181 tcgtagccag gcggatgtcg acactgcaca tcggctggcg gaagatatcc tgcgcttcgc
    21241 ccgctgccgc cagggtggtg cattgacctg acagaaacac agaaaagaag cgatttgctg
    21301 caatcttaag cagttgaatc gcttttactg aaattaggtt gacgagatgt gcagattacg
    21361 gtttaatgcg ccccgttgcc cggatagctc agtcggtaga gcaggggatt gaaaatcccc
    21421 gtgtccttgg ttcgattccg agtccgggca ccaaattcat atcaacggac ctctacggag
    21481 gtccgttttt cgtttcagaa cgccacgatt taagcgttct gcctacaaat caattctacc
    21541 gaactcaacc agattccccc cacatcaacc ccattgtgtg ggtataattg cgggcatacc
    21601 ccagttcgac agaatttgta ccctctttaa cgcattcaga aggctgaact atggcactga
    21661 ctgacgcaaa aatccgggct gcaaagccca ctgacaaggc ttataaactc actgacgggg
    21721 ctggcatgtt cctgctggta catcctaatg gctcccgtta ctggcgtctc cgttatcgta
    21781 ttctgggtaa ggagaagact ctggcacttg gtgtgtatcc agaagtttct ctctccgaag
    21841 ctcgtacaaa acgggatgag gcccgaaaac tgatttcgga gggggttgac ccttgcgaac
    21901 agaaaagagc taaaaaagta gtccctgatt tacagctctc ttttgaacat attgcgcgac
    21961 gctggcatgc cagtaataaa caatgggcac aatcacacag cgataaagta ctcaaaagcc
    22021 tcgagactca cgttttcccc tttatcggca accgggatat cacaacactc aataccccgg
    22081 atctgcttat ccctgttcgt gctacagaag ctaaacaaat ttatgaaatc gccagtcgtc
    22141 tgcagcaaag aatatctgcc gtaatgcgtt atgccgtaca gtctggcatc atcagatata
    22201 atcctgctct ggatatggct ggcgcattga ctacggtaaa acgccagcat cgccccgctc
    22261 ttgatctttc tcgcctgcct gaacttttgt cgcgtattgg cagttacaaa gggcaacctg
    22321 tcacccagct tgccgttatg ctgaatttac tggtttttat tcgttccagt gaactcagat
    22381 acgcccgctg gtctgaaatt gatattgaca atgccatgtg gactattcca gccgaacgcg
    22441 aacccctgcc aggcgtaaaa ttctcacacc ggggctccaa gatgcgaaca ccacatcttg
    22501 tgccactcag caaacaggct gtagccatac tgacagaact acagacatgg gctggtgaaa
    22561 atggtctgat ctttacggga gcacatgacc cgcgtaaacc aatcagtgaa aatgtaatga
    22621 acgcatctca cacaattaaa cacggagcag tatgatggtt aaaagggtga aactgacagg
    22681 tgtggagcct cgcagatttc cggcatcata gtgcccaata cgggatgcat aaagctccct
    22741 cagactggag actccacaaa tgaaatatac accggttggc gttgatatcg caaaacatgt
    22801 cattcagatt cacttcatca atgagcacac aggtgaagtg gttgataaac agttgcgtag
    22861 acaggatttt ctgacgttct tcggcaaccg tgagccatgc ctgattggta tggaggcctg
    22921 tggaggttct cagcactggg cacggaaac
//
LOCUS       DADMHM010000048        22839 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.049, whole genome shotgun sequence.
ACCESSION   DADMHM010000048 DADMHM010000000
VERSION     DADMHM010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22839)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22839)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22839
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.049"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(1..3634)
                     /locus_tag="JN125_001647"
                     /pseudo
     CDS             complement(1..3634)
                     /locus_tag="JN125_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415030.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat protein"
     gene            complement(4064..6481)
                     /locus_tag="JN125_001648"
     CDS             complement(4064..6481)
                     /locus_tag="JN125_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAY8871463.1"
                     /translation="MIARWFWREWRSPSLLIVWLALSLAVACVLALGNISDRMEKGLS
                     QQSREFMAGDRALRSSREVPQAWLEEAQKRGLKVGKQLTFATMTFAGDTPQLANVKAV
                     DDIYPMYGDLQTNPPGLKPQAGSVLLAPRLMALLNLKTGDTIDVGDATLRIAGEVIQE
                     PDSGFNPFQMAPRLMMNLADVDKTGAVQPGSRVTWRYKFGGNENQLDGYEKWLLPQLK
                     PEQRWYGLEQDEGALGRSMERSQQFLLLSALLTLLLAVAVAAVAVAMNHYCRSRYDLV
                     AILKTLGAGRAQLRKLIVDQWLMVLTLSAVTGGAIGLLFENVLMVLLKPVLPAALPPA
                     SLWPWLWALGTMTVISLLVGLRPYRLLLATQPLRVLRNDVVANVWPLKFYLPIVSMVV
                     VLLLAGLMGGSMLLWAVLAGVVVLALLCGVLGWMQLNVLRRMTLKSLPLRLAVSRLLR
                     QPWSTLSQLSAFSLSFMLLALLLVLRGDLLDRWQQLPPESPNYFLINIATEQVAPLKA
                     FLAEHHIVPESFYPVVRARLTAINDKPTEGNEDEALNRELNLTWQNTRPDHNPIVAGN
                     WPPKADEVSMEEGLAKRLNVALGDTVTFMGDTQEFRAKVTSLRKVDWESLRPNFYFIF
                     PEGALDGQPQSWLTSFRWENGNGMLTQLNRQFPTISLLDIGAILKQVGQVLEQVSRAL
                     EVMVVLVTACGMLLLLAQVQVGMRQRHQELVVWRTLGAGKKLLRTTLWCEFAMLGFVS
                     GLVAAIGAETALAVLQAKVFDFPWEPDWRLWIVLPCSGALLLSLFGGWLGARLVKGKA
                     LFRQFAG"
     gene            complement(6478..7164)
                     /locus_tag="JN125_001649"
     CDS             complement(6478..7164)
                     /locus_tag="JN125_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAY8871464.1"
                     /translation="MPAENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALVGE
                     SGSGKSTLLAILAGLDDGSSGEVSLVGQPLHNMDEEARAKLRAKHVGFVFQSFMLIPT
                     LNALENVELPALLRGESSAESRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA
                     FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLIMVTHDLQLAARCDRCLR
                     LVNGQLQEEA"
     gene            7135..7758
                     /gene="tesA"
                     /locus_tag="JN125_001650"
     CDS             7135..7758
                     /gene="tesA"
                     /locus_tag="JN125_001650"
                     /EC_number="3.1.1.5"
                     /EC_number="3.1.2.14"
                     /EC_number="3.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005225520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional acyl-CoA thioesterase I/protease
                     I/lysophospholipase L1"
                     /protein_id="HAY8871465.1"
                     /translation="MNFNNVFRWHLPFLFLVLLTFRAAAADTLLILGDSLSAGYRMSA
                     SAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLR
                     GFQPQQTEQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVP
                     LLPFFMEEVYLKPQWMQDDGIHPNRDAQPFIADWMAKQLQPLVNHDS"
     gene            7748..8557
                     /gene="ybbO"
                     /locus_tag="JN125_001651"
     CDS             7748..8557
                     /gene="ybbO"
                     /locus_tag="JN125_001651"
                     /EC_number="1.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP(+)-dependent aldehyde reductase"
                     /protein_id="HAY8871466.1"
                     /translation="MTHKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLA
                     GCRKPDDVERMNNMGFTGVLIDLDSPESVDRAADEVIALTDNCLYGIFNNAGFGMYGP
                     LSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYA
                     ASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARF
                     TLGPEAVVDKVRHAFISEKPKMRYPVTLVTWAVMVLKRLLPGRVMDKILQG"
     gene            8618..9472
                     /gene="cnoX"
                     /locus_tag="JN125_001652"
     CDS             8618..9472
                     /gene="cnoX"
                     /locus_tag="JN125_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308582.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperedoxin"
                     /protein_id="HAY8871467.1"
                     /translation="MSVENIVNINESNLQQVLEQSMTTPVLFYFWSERSQHCLQLTPI
                     LESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAI
                     RALLDKVLPREEELKAQQAMQLMQEGNYTDALPLLKDAWQLSNQNGEIGLLLAETLIA
                     LNRSEDAEAVLKTIPLQDQDTRYQGLVAQIELLKQAADTPEIQQLQQQVAENPEDAAL
                     ATQLALQLHQVGRNEEALELLFGHLRKDLTAADGQTRKTFQEILAALGTGDALASKYR
                     RQLYALLY"
     gene            complement(9535..10314)
                     /gene="fetB"
                     /locus_tag="JN125_001653"
     CDS             complement(9535..10314)
                     /gene="fetB"
                     /locus_tag="JN125_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308581.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron export ABC transporter permease subunit
                     FetB"
                     /protein_id="HAY8871468.1"
                     /translation="MNSHNITNESLALALMLVVVAILISHKEKLALEKDIFWSVGRAI
                     IQLIIVGYVLKYIFSADDASLTLLMVLFICFNAAWNAQKRSKYIAKAFISSFIAITVG
                     AGITLAVLILSGSIEFIPMQVIPIAGMIAGNAMVAVGLCYNNLGQRVISEQQQIQEKL
                     SLGATPKQASAILIRDSIRAALIPTVDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQ
                     IMVTFMLLSTASLSTIIACYLTYRKFYNSRHQLVVTQLKKK"
     gene            complement(10301..10978)
                     /gene="fetA"
                     /locus_tag="JN125_001654"
     CDS             complement(10301..10978)
                     /gene="fetA"
                     /locus_tag="JN125_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter ATP-binding protein FetA"
                     /protein_id="HAY8871469.1"
                     /translation="MQENSPLLQLQNVGYLAGDAKILNNINFSLRAGEFKLITGPSGC
                     GKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEIYRQQVSYCAQTPTLFGDTVYDNLI
                     FPWQIRNRQPDPAIFLDFLERFALPDSILTKNIAELSGGEKQRISLIRNLQFMPKVLL
                     LDEITSALDESNKHNVNEMIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQ
                     EARYELA"
     gene            11124..12041
                     /locus_tag="JN125_001655"
     CDS             11124..12041
                     /locus_tag="JN125_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="paraslipin"
                     /protein_id="HAY8871470.1"
                     /translation="MLIFIPILIFVALVIVGAGVKIVPQGYQWTVERFGRYTKTLQPG
                     LSLVVPFMDRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFIQVIDAPRAAYEVS
                     NLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEATNPWGIKVTRIEIR
                     DVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQILKAEGERQSA
                     FLQAEARERSAEAEARATKMVSEAIASGDIQAVNYFVAQKYTEALQQIGSSTNSKVVM
                     MPLEASSLMGSIAGIAELVKDSANKRTQP"
     gene            12038..12496
                     /locus_tag="JN125_001656"
     CDS             12038..12496
                     /locus_tag="JN125_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415021.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NfeD family protein"
                     /protein_id="HAY8871471.1"
                     /translation="MMELMVVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGL
                     VVWLVPLGWEWQGVMFAILTLLAAWLWWKWLSRRVREQKHSDSHLNQRGQQLIGRRFV
                     LESPLVNGRGHMRVGDSSWPVSASEDLGAGTHVEVIAIEGITLHIRAISS"
     gene            complement(12497..12904)
                     /locus_tag="JN125_001657"
     CDS             complement(12497..12904)
                     /locus_tag="JN125_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator CueR"
                     /protein_id="HAY8871472.1"
                     /translation="MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHL
                     NELTLLRQARQVGFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMR
                     DQLLALANACPGDDSADCPIIENLSGCCHHRAG"
     gene            complement(13029..14321)
                     /locus_tag="JN125_001658"
     CDS             complement(13029..14321)
                     /locus_tag="JN125_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HAY8871473.1"
                     /translation="MMNTEGNNGNKPLGLWNVVSIGIGAMVGAGIFALLGQAALLMEA
                     STWVAFAFGGIVAMFSGYAYARLGASYPSNGGIIDFFRRGLGNGVFSLALSLLYLLTL
                     AVSIAMVAHAFGAYAVQFLHEGSQEEHLILLYALGSIAVMTLFNSLSNHAVGRLEVIL
                     VGIKMMILLLLIIAGVWSLQPAHISVSAPPSSGAFFSCIGITFLAYAGFGMMANAADK
                     VKDPQVIMPRAFLVAIGVTTLLYISLALVLLSDVSALELEKYADTAVAQAAFPLLGHV
                     GYVIVVIGALLATASAINANLFAVFNIMDNMGSERELPKLMNKSLWRQSTWGNIIVVV
                     LIMLMTAALNLGSLASVASATFLICYLAVFVVAIRLRHDIHASLPILIVGTLVMLLVI
                     VGFIYSLWSQGSRALIWIIGSLLLSLIVAMVMKRNKTV"
     gene            complement(14324..15256)
                     /gene="glsA"
                     /locus_tag="JN125_001659"
     CDS             complement(14324..15256)
                     /gene="glsA"
                     /locus_tag="JN125_001659"
                     /EC_number="3.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaminase A"
                     /protein_id="HAY8871474.1"
                     /translation="MLDANKLQQAVDQAYTQFHSLNGGQNADYIPFLANVPGQLAAVA
                     IVTCDGNVYSAGDSDYRFALESISKVCTLALALEDVGPQAVQDKIGADPTGLPFNSVI
                     ALELHGGKPLSPLVNAGAIATTSLINAENIEQRWQRILHIQQQLAGEQVALSDEVNQS
                     EQTTNFHNRAIAWLLYSAGYLYCDAMEACDVYTRQCSTLINTVELATLGATLAAGGLN
                     PLTHKRVLQADNVPYILAEMMMEGLYGRSGDWAYRVGLPGKSGVGGGILAVVPGVMGI
                     AAFSPPLDEEGNSVRGQKMVASVAKQLGYNVFKG"
     gene            15518..18022
                     /gene="copA"
                     /locus_tag="JN125_001660"
     CDS             15518..18022
                     /gene="copA"
                     /locus_tag="JN125_001660"
                     /EC_number="7.2.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-exporting P-type ATPase CopA"
                     /protein_id="HAY8871475.1"
                     /translation="MSQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSITEAHVT
                     GTASAEQLIETIKQAGYDASVSHPKAKPLAESSIPSEALTAVSEALPAATADDDDSQQ
                     LLLSGMSCASCVTRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYG
                     AEAIEDDAKRRERQQETAVATMKRFRWQAIVALAVGIPVMVWGMIGDNMMVTADNRSL
                     WLVIGLITLAVMVFAGGHFYRSAWKSLLNGAATMDTLVALGTGVAWLYSMSVNLWPQW
                     FPMEARHLYYEASAMIIGLINLGHMLEARARQRSSKALEKLLDLTPPTARVVTAEGEK
                     SVPLAEVQPGMLLRLTTGDRVPVDGEITQGEAWLDEAMLTGEPIPQQKGEGESVHAGT
                     VVQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVVIALI
                     SAAIWYFFGPAPQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDA
                     DALQRASTLDTVVFDKTGTLTEGKPQVVAVKTFADVDEAQALRLAAALEQGSSHPLAR
                     AILDKAGDMQLPQVNGFRTLRGLGVSGEAEGHALLLGNQALLNDQQVDTKAIEADISA
                     QASQGATPVLLAIDGKVVALLAVRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANA
                     IAKEAGIDEVIAGVLPDGKAEAIKRLQSEGRQVAMVGDGINDAPALAQADVGIAMGGG
                     SDVAIETAAITLMRHSLMGVADALAISRATLRNMKQNLLGAFIYNSIGIPVAAGILWP
                     FTGTLLNPVVAGAAMALSSITVVSNANRLLRFKPKE"
     gene            complement(18237..18578)
                     /locus_tag="JN125_001661"
     CDS             complement(18237..18578)
                     /locus_tag="JN125_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415016.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antidote protein"
                     /protein_id="HAY8871476.1"
                     /translation="MKQATRKPTTPGDILLYEYLEPLDLKINELAELLHVHRNSVSTL
                     INNNRKLTTEMAFRLAKVFDTTVDFWLNLQAAVDLWEVENNMRTQEELGRIETVAEYL
                     ARREERAKKVA"
     gene            18716..19510
                     /locus_tag="JN125_001662"
     CDS             18716..19510
                     /locus_tag="JN125_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871477.1"
                     /translation="MDLLYRVKTLWAALRGNHYTWPAIDITLPGNRHFHLIGSIHMGS
                     HDMTPLHTRLLKKLKNADALIVEADVSTSDTPFANLPTCEALEERINEEQLQNLQHIS
                     QEMGISPSLFSTQPLWQIAMVLQATQAQKLGLRAEYGIDYQLLQAAKQQHKPVIELEG
                     AENQITMLLQLPDKGLALLDDTLTHWHTNARLLQQMMSWWLNAPPQNNDITLPNTFSQ
                     SLYDVLMHQRNLAWRDKLRAMPPGRYVVAVGALHLYGEGNLPQMLR"
     gene            19714..20193
                     /gene="ybaK"
                     /locus_tag="JN125_001663"
     CDS             19714..20193
                     /gene="ybaK"
                     /locus_tag="JN125_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006818871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK"
                     /protein_id="HAY8871478.1"
                     /translation="MTPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQV
                     YKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALGAKKVEMADPMAAQRSTGYLVGG
                     ISPLGQKKRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILDAKFADIARRD"
     gene            complement(20230..21882)
                     /locus_tag="JN125_001664"
     CDS             complement(20230..21882)
                     /locus_tag="JN125_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-sugar
                     hydrolase/5'-nucleotidase"
                     /protein_id="HAY8871479.1"
                     /translation="MKLLQRGVALALLTTFTLASETALAYEQDKTYKITVLHTNDHHG
                     HFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFR
                     GMNLVGYDAMAIGNHEFDNPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFKR
                     QDLKIAVIGLTTDDTAKIGNPEYFTDVEFRKPADEAKLVIQELQQTEKPDIIIAATHM
                     GHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQAPVCMAAENKKQVDYVPGTPCK
                     PDQQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKVTWEDGKSERVL
                     YTPEIAENQQMISLLSPFQNKGKAQLEVKIGETNGRLEGDRDKVRFVQTNMGRLILAA
                     QMDRTGAEFAVMSGGGIRDSIEAGDISYKNVLKVQPFGNVVVYADMTGKEVIDYLTAV
                     TQMKPDSGAYPQFANVSFVTKDGKLNDLKIKGEPVDPAKTYRMATLNFNATGGDGYPR
                     LDNKPGYVNTGFIDAEVLKAYIQKSSPLDVSVYEPKGEVSWQ"
     gene            22100..>22839
                     /locus_tag="JN125_001665"
     CDS             22100..>22839
                     /locus_tag="JN125_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8871480.1"
                     /translation="MAMSEQTQPVAGAAASTTKARTSFGILGAISLSHLLNDMIQSLI
                     LAIYPLLQSEFSLTFMQIGMITLTFQLASSLLQPVVGYWTDKYPMPWSLPIGMCFTLS
                     GLVLLALAGSFGAVLLAAALVGTGSSVFHPESSRVARMASGGRHGLAQSIFQVGGNFG
                     SSLGPLLTAVIIAPYGKGNVAWFVLAALLAIVVLAQISRWYSAQLRMNKGKPKATIIN
                     PLPRNKVVLAVSILLILIFSKYFYMASI"
BASE COUNT         5131 a         6465 c         5988 g         5255 t
ORIGIN      
        1 cctccagccc tatcgggtcc tgagtgatat accgcccctg caacggatcg tagtaccggt
       61 tccggttgta gtacagcccc gactccttat catactgctg ccccggcagc cggtacggct
      121 ggtgcaggtg atgcgggttc tcctcattaa gctggttgcc ccattcatca tattccgcgc
      181 tccacgccgt attgccgtct tcactgataa gcgccagcgg caagccccgg tggtcacagt
      241 gataaagatg tatttttcgc tcaggcaaat aaaccggctc tatctgtgcc gccagccgct
      301 ccaccgtcag cccgcactgc gcaagccact ggcggctttc actgctcacg cagtttgccc
      361 ggatttcccc ctccagcctg tccagcagcc ccaccagttc agccgggaac accacaccgt
      421 gaccgtcttc gctcccttcc tgctgtaact tctccgccag gctgcggcac tgcgctttct
      481 cccgttcacc gttgtctgtt tcgatgcgga tgagcggcgc gaagctcccc ggctggtata
      541 ccgtctggat acgcgtggtg tcggtctgta ccgtcgtcag ccggtcgccg tcccatccgt
      601 accacgttac ctccggttta cgcgacagcg acatccaccc cgtcaagtca cgctcgcgac
      661 gccacacccg tttccccgtc cggcggctca gcgggtcgta gaggtagcgg ctctcgacca
      721 gtggctcgcc atgctgtatc cgcgtgtgga acaccaggcg gtgctggctg tcgtagtggt
      781 agtggtgggt ccgctcgtcg tccgtccgta tcacacccgc cgggatgcgg tccgtcttct
      841 ccgtcagtct gccgtattca tcatagtggt aaacatagtg cgcatcctct gcgatgcggt
      901 tatccggcca cgccgtgagc gtgctgtccg ggtgtagctc cgggtccggc agccggtttc
      961 ccgccgggtc ggtcgcatac gggatgcgga tgtccaggtc cggtgcgagg gtgcgcacgc
     1021 tctccagcct gcccgtggcg ctgtagccgt attcccgcgt ctgtcgcgga ccgctgatgc
     1081 gcaccaggtc gccgttgtca ttccacccgt agtcacggtc atacaccagg ctgttcaggt
     1141 gctggctctg taactggcct gcgggggtgt atgtgctggt cagttcatat gcggcattac
     1201 tgcctgccat gctgccgaag ctgcgcaccg tctcacggtg cagcctgtcc cgcgtatact
     1261 cgaccagcgg cgtcccgccc agcttcatgc ccgccaggta accgctgccg taggtcagcc
     1321 actccaccgg cggcaggctg tccggcgtga cgcggtttgc cagcccctgt tcgttgtagg
     1381 cgtgtttcgt ctcatgctgc cacagcagtt cccccgtctc cgggttctcc accgtctgcc
     1441 gttcgcccgt caggcggccc ttatcgtcgt agccgtagtg gacagcgaca cggtggcctt
     1501 cgctcaggtg gctgatttct ctcagccagc cgtggccgtc atactgccac tgctctgccg
     1561 ggtcgccgtt caccgtccgg tgcgtgatgc ggtccgacgc atcgtagtgc cagagggtga
     1621 caagcccctc atcctcactc tgcgtgagtt ttccggtcag gtcataatga taacgttgcg
     1681 tccgcccgtc aaagccgccc tgctgtacca gccggtccag cgcatcgtag ctgaagtcgc
     1741 tgtgactgcc gttctcgtta gtcagactga tgacacgtcc ggcagcatcg tactccatac
     1801 tgcgcgtcag cccgccctgc gtggtgctga ccgcctttcc ccacgcatcg tactgtgtct
     1861 cgctccggtt gccgtccggg gtgataacgg cagtcaggtc gcctgcggcg ttgtactcat
     1921 actgcgtttc acggccctgt gcgtctttca ccgaggttaa ccggccacgg ttgtcatagt
     1981 agcggtaaag gctgatacct tcctcgcggt gaaccgccgt catctgccgg gtgctgcccg
     2041 tcgcatccgt tgtcgtcgcc ggtaactcac tgtgcgcgtc atcgtagcgg tagcgtactg
     2101 tctccccgct gcgcgatgtc tccgatacca gcctgcccgg ttcatcatat tcccggcggc
     2161 tctccagccc gtccgggtac accaccgccg tcagctggtt cccgtcgtta tagtaaaatt
     2221 tcgtctcccg cccgtccggt gtggtgatgt ccgtgatatc gccggacacc acattcagac
     2281 cgtactctgt ccgccgtccc gccgcgtccg tctgcgccgt gagccttcct gccgcgtcat
     2341 acccgctgcg cgtgacgctg ccgtccgcca gttctttttt caccgcccgt ttcagcccgg
     2401 ccccgccttc tgtatgcagc acctcacgcc ggttcaggct gtcggtgacg gtgatgcggt
     2461 cctgctcata aagatagcgg tagcttaacc ctgccgggtt cagttgctcc accacccgcc
     2521 ccgtatcgtc gtagcggtag cgcatctccg gccttcccgc gtaacggtgc gccaccatcc
     2581 ggcccgggtg ctgcgcgtca tacgtgaaag cgcgcacctg cgtattgctg cggtcatata
     2641 ccgccagcag ttcaccggct tccgtatacg tgtaccgcgc cagtggcgca ccgggcaggc
     2701 tctccgggta tgccgggtcg tgcatcagcc acaccgccga aaggcggata cccctgtcgg
     2761 ggccgtactc tgtgctctcc ggcagtgaat caggaatgtc cggtcgtttt gctccggcga
     2821 cgaccgcctg ctgccgggcc tcttccgcct gctgccgggc ctcttccgcc cgctgcgcct
     2881 gtgtggtcag caccagacgg aactcccgcc cggcaccgtc cgtcacgccg gtgatttccc
     2941 cggccaggtc gcctgcggcc tcacgccggt acgtcagcgt ccgcccgaag cggtccgcca
     3001 tcccggtaag cacccggtac ggcggcagcg gcgctggcag tacgtcctca gcacccggca
     3061 cccgctcaga tcaccccagt atccaccacg gcccctgtgc gctgttggtc gccaggtaaa
     3121 gatgcgggct taaccggata tccggcggca gcgacgccca cagccgtgcc agcgtgtggc
     3181 cgtccggctg cgctgcctta ccgccacgca ccagccacat tgactcactg cggctgtaca
     3241 cagcctcccc cggcagcagc ggctcaaagt gaatgctccg cccgccgttg tcgttgagta
     3301 ccagtgcatc atcgcgtatc tgtaagcgga tatcagaagg cgctttccag ccggggccaa
     3361 aaattcccac tggcgcaggc gtcttcgtcc ggtagctgct gtaggtgcgg gagagaatga
     3421 acggcagcgg gtcgggcagc gcaaggtccg tctcgccggg ctgtactttt gcaccgagca
     3481 gcgggttcac cgggttgccc gaggtcatcc cgcccggaca caccgagcac gccacgccag
     3541 ttggcgcgcc aattcttaca cctgccgaac cctggacaat gggaccgcca tactgagtca
     3601 tatctccctg acgcgccgct ggttttccgc tcatataaag tgccctttta gttattgttc
     3661 atatccctgt gttagcaaca aaaaaaataa aatgacacac aagaccagct aatgtattta
     3721 tatatttttc acataaactt atttgttctc aatcaacaat aactgttatt acaggtcact
     3781 ttcaatatct tattaaacta aaatttttag cacagatgaa ttcatcatca acaaattcac
     3841 tatatggata atatccattc aacgcatatg atttatgatt ttattagtct gagttatttt
     3901 tgtagggcta tatttaaaat tattaaactc caccgattca gattaatatc agcaatagaa
     3961 agataggaaa tcaccaattc aataacatca tcaatgaaac atattgtaga attaatttaa
     4021 acaaggcgtt ccattcaacc agaacgcccc ttatttactc tcatcacccc gcaaactgcc
     4081 tgaacagcgc cttaccctta accagtcgcg cacccagcca gccgccgaaa agcgacagca
     4141 gcagcgcacc gctgcacggc agaacaatcc acaatcgcca gtctggctcc cacgggaaat
     4201 caaacacttt cgcctgcaac actgccagtg ccgtttccgc accaattgcg gccaccaggc
     4261 cggaaacaaa cccaagcatg gcgaactcac accacaatgt cgtgcgcagc agttttttcc
     4321 ccgcaccgag tgtgcgccat accaccagct cctgatgacg ctggcgcatt cccacctgca
     4381 cctgtgccag caacagcaac ataccgcagg cggtgaccag caccaccatc acctccagcg
     4441 cccgacttac ctgctccagc acctgaccga cctgttttaa aatcgcgcca atatctaaca
     4501 ggctaatggt cgggaactgg cggttgagtt gcgtcaacat gccgttgcca ttctcccagc
     4561 ggaaactggt aagccagctc tgcggttgcc cgtctaatgc cccttccggg aaaataaaat
     4621 agaaattagg ccgcagactt tcccagtcca ctttgcgcag gctggtcact ttagcgcgga
     4681 actcctgggt atcgcccata aaagtcacgg tatcaccgag ggcaacgttt aagcgtttcg
     4741 ccagcccctc ttccatcgac acttcatcgg cttttggcgg ccagttaccg gcgacaatcg
     4801 gattatgatc gggccgcgta ttttgccagg taagattgag ttcgcgatta agcgcctcat
     4861 cttcattacc ttctgtcggc ttatcgttaa tcgccgtcag ccgcgcccgc actaccggat
     4921 aaaatgattc cgggactata tgatgttccg cgaggaacgc ttttagcggt gctacctgtt
     4981 ctgtggcgat gttaattaaa aagtagttcg ggctttctgg cggtagctgc tgccagcggt
     5041 cgagcagatc gccacgcaat accagcaaca gcgccagcag cataaaggag agcgaaaatg
     5101 ccgaaagctg gcttaacgtt gaccacggct gacgtaacag gcggctaacc gccaggcgca
     5161 gaggtagcga tttcagcgtc atgcggcgaa gtacattcag ctgcatccag cccagcacac
     5221 cgcacagcaa agccagtact accacgcccg ccagcaccgc ccaaagcagc atgctgccac
     5281 ccattaatcc ggcgagcagc agcacaacca ccatactgac aatcggcaga taaaacttca
     5341 gcggccagac gttcgctacc acatcattac gtaatacgcg taaaggctgc gttgccagca
     5401 acaagcggta tggtcgtagc cccaccagca gcgagatgac cgtcatggtg ccaagcgccc
     5461 acagccacgg ccagaggctg gctggcggta gtgcagcagg cagaacgggc ttgagcagca
     5521 ccatcaacac gttttcgaac aacaggccta tggccccacc ggtaacggct gaaagcgtca
     5581 gcaccatcaa ccactgatcg acgattagct tacgcagttg cgctcgccct gcccccagcg
     5641 ttttgaggat cgccaccaga tcgtagcgac tgcgacagta atgattcatc gctaccgcca
     5701 ccgctgccac tgccactgcc agcagcaagg tcagaagcgc cgaaagcagc aggaactgtt
     5761 gcgagcgttc catcgatcgc cccagcgcgc cttcgtcctg ttccagaccg taccagcgtt
     5821 gttcgggttt aagctgaggt aacaaccatt tctcatagcc gtcgagctgg ttctcgttgc
     5881 cgccgaattt ataacgccag gtgacccgac tccccggctg cacggctccg gttttatcga
     5941 catccgccag attcatcatc agacgcggag ccatctggaa ggggttaaaa ccggaatccg
     6001 gttcctgaat cacttctccg gcaatccgca aggtggcatc gcccacgtca atggtgtcgc
     6061 ccgttttcag gttaagcagt gccatcaggc gtggggccag caatacgctg cccgcctgcg
     6121 gtttcaggcc agggggatta gtttgcagat cgccatacat cgggtagata tcatccaccg
     6181 ctttgacgtt cgccagctgc ggtgtgtcgc ctgcaaaggt cattgtggcg aaagtcagct
     6241 gcttgccgac tttcaggccg cgcttttgcg cttcctccag ccacgcttgc ggcacttcgc
     6301 gtgaactgcg caacgcccga tcgcccgcca taaactcacg gctttgctgg cttaagccct
     6361 tctccatgcg atcgctgata ttgcccagcg ccagcacgca ggccaccgcc aggcttagcg
     6421 ccagccagac aattaatagc gacggcgaac gccattcgcg ccagaaccaa cgtgcaatca
     6481 tgcttcctcc tgcaactgcc cgttcaccag ccgtaagcag cggtcgcagc gtgccgccag
     6541 ttgcaggtcg tgggtcacca taatcaacgt ggtgccatgt tcacggttga gggaaaacag
     6601 caggtcggca attttatcgc ccgtctggcg gtcaaggttg ccggtgggtt cgtcggcaaa
     6661 cagcacatca ggtcgaccat taaaggctcg tgccagcgcc actcgttgct gttcaccgcc
     6721 ggaaagctgt gccggaagat gatccagacg tttacccagc cctaactgtt cgagcaacgc
     6781 tttcgccccg ttacgacttt ccgcgctact ctcaccgcgc agcagagccg gaagctcgac
     6841 gttttccagc gcgttaaggg taggaattaa cataaatgac tgaaaaacaa agccgacgtg
     6901 cttcgcgcgc aactttgccc gcgcttcttc gtccatatta tgtagcggtt gtcccaccag
     6961 actcacttcg ccactgctgc cgtcatcaag cccggcgagg atcgccagca aggttgactt
     7021 acccgatccc gactcgccca ccagtgcgat ggtctcgcca cgtttgacaa ccagctcaac
     7081 tccggtgagg atggagagtt catgctcccc ctgaccgacg gacttcttaa gatgatgaac
     7141 ttcaacaatg ttttccgctg gcatttgccc ttcctgttcc tggtcctgtt aaccttccgt
     7201 gccgccgcag cggacacgtt attgattctg ggtgatagcc tgagcgccgg gtatcgaatg
     7261 tctgccagcg cggcctggcc tgccttgttg aatgataagt ggcagagtaa aacgtcggta
     7321 gttaatgcca gcatcagcgg cgacacctcg caacaaggac tggcgcgcct tccggctctg
     7381 ctgaaacagc atcagccgcg ctgggtgctg gttgaactgg gcggcaatga cggtttgcgt
     7441 ggttttcagc cacagcaaac cgagcaaacg ctgcgccaga ttttgcagga tgtcaaagcc
     7501 gccaacgctg aaccattgtt aatgcaaata cgtctgcctg caaactatgg tcgccgttat
     7561 aatgaagcct ttagcgccat ttaccccaaa ctcgccaaag agtttgatgt tccgctgctg
     7621 ccctttttta tggaagaggt ctacctcaag ccacaatgga tgcaggatga cggtattcat
     7681 cccaaccgcg acgcccagcc gtttattgcc gactggatgg cgaagcagtt gcagccttta
     7741 gtaaatcatg actcataaag caacggagat cctgacaggt aaagttatgc aaaaatcggt
     7801 cttaattacc ggatgttcca gtggaattgg cctggaaagc gcactcgaat taaaacgcca
     7861 gggttttcat gtgctggcag gttgccgaaa accggatgat gttgagcgta tgaacaacat
     7921 gggatttacc ggcgtgttga tcgatctgga ttcaccagaa agtgttgatc gcgcagcaga
     7981 cgaggtgatc gccctgaccg ataattgtct gtatgggatc tttaacaatg ccggattcgg
     8041 catgtatggc cccctttcca ccatcagccg tgcgcagatg gaacagcagt tttccgccaa
     8101 ctttttcggc gcacaccagc tcaccatgcg cctgttaccc gcgatgttac cgcacggtga
     8161 agggcgtatt gtgatgacat catcggtgat gggattaatc tccacgccgg gtcgtggcgc
     8221 ttacgcggcc agtaaatatg cgctggaggc gtggtcagac gcgctgcgca tggagctacg
     8281 ccacagcgga attaaagtca gcctgatcga acccggtccc attcgtactc gcttcaccga
     8341 caacgtcaac cagacgcaaa gtgataaacc agtcgaaaat cccggcatcg ccgcccgctt
     8401 tacgttggga ccggaagcgg tggtcgacaa agtgcgccat gcttttatta gcgagaagcc
     8461 gaagatgcgc tatccggtaa cgctggtgac ctgggcagta atggtgctca agcgcctgct
     8521 gcctgggcgc gtgatggaca aaatattgca ggggtgagtt gaagcgcgcg cttaagcccc
     8581 catgtcaaag aaaatatcga caacagagag cgactccatg tccgtagaaa atattgtcaa
     8641 cattaacgaa tctaacctgc aacaggttct tgaacagtcg atgaccactc cggtgctgtt
     8701 ctatttttgg tctgaacgta gccagcactg tttgcagtta accccgatcc tggaaagcct
     8761 cgcggcgcag tacaacgggc aatttattct ggcgaagctg gactgcgacg cggagcagat
     8821 gattgccgcc cagtttggtc tgcgcgcgat tccgaccgtg tatctgttcc agaacgggca
     8881 accggtagat ggcttccagg ggccgcaacc ggaagaggcg atccgcgccc tgctggataa
     8941 agtgctgccg cgcgaagaag agctgaaagc gcagcaggcg atgcaactga tgcaggaagg
     9001 caattacacc gatgccctgc cattgctgaa agacgcctgg cagttgtcga atcagaacgg
     9061 ggagatcggc ctgctgctgg cagaaacgct gattgcgctg aaccgttctg aagatgcgga
     9121 agcggtgctg aaaaccattc cgttgcagga tcaggacacc cgctaccagg ggctggtggc
     9181 gcaaatcgaa ctgctgaagc aggcggctga tacgccggaa attcaacagt tgcaacagca
     9241 ggtggcggag aatccagaag atgccgcact ggcgacgcaa ctggcgctgc aactgcatca
     9301 ggttgggcgc aatgaagagg cgctggagtt gctgttcggg catctgcgta aagatctcac
     9361 cgccgcagac ggtcagacgc gtaaaacgtt ccaggagatc ctcgctgcgc tgggtacggg
     9421 tgatgcactg gcgtcgaagt atcgccgcca gctgtatgca ttgttgtatt gatattccgt
     9481 tgttcggcac atgaaccaca acgccggatg cgatgctgcg catccggcat cgcatcattt
     9541 cttcttcaat tgcgtcacca ccaactggtg gcgcgaatta taaaacttac gataggttaa
     9601 atagcaggca ataatggtcg acaagctggc ggttgagagc agcataaagg tcaccataat
     9661 ctgatattta atcgccttca ccggatcaat cccggcaaat atcagcccgg acatcattcc
     9721 tggtaaactc actaagccaa ccgtttttgc tgaatcgacc gtcggaatta aagccgcgcg
     9781 aatactgtcg cgaatcaata tcgctgaagc ctgcttcggc gtcgcgccaa gactcagttt
     9841 ctcctgaatc tgttgctgtt cgctaatgac ccgttgccct aaattgttgt aacacaaccc
     9901 caccgctacc atggcgttac cggcaatcat cccggcgata gggatcacct gcatcgggat
     9961 aaattcaatc gaccctgaga gaatcagcac cgccagggta attcccgccc cgaccgtaat
    10021 ggcaataaac gatgagataa aagctttagc aatatattta ctgcgttttt gcgcgttcca
    10081 cgccgcatta aagcagataa ataacaccat caataatgtc aggctggcat catccgcgct
    10141 gaaaatatac ttcagcacat agccgacaat aatcagctga attatcgcgc gcccgacgct
    10201 ccagaaaata tctttctcca gcgccagttt ttctttatgg ctaattaaga ttgccaccac
    10261 caccagcatt aatgccagtg ccaatgattc gttagtaata ttatgcgagt tcatagcgtg
    10321 cttcctgcat ttctccggca tgcggttgca gtgtaatcac tttatccgca tgattaattt
    10381 cgtctttatc gtgtgtcacc cacagcacgg caatattttg ctcgcgcaca taacgatgga
    10441 tcatctcatt aacgttatgt ttattacttt catccagcgc actggtgatt tcatccagca
    10501 ataaaacctt cggcataaat tgcaggttac gaatcagtga gatgcgttgt ttttcaccac
    10561 cagatagctc ggcgatattt ttcgtcaaaa tgctgtccgg caaggcgaag cgttcgagaa
    10621 aatcgagaaa aatggctggg tcaggctgcc ggttacggat ctgccaggga aagatcagat
    10681 tatcgtatac cgtatcgcca aacagcgtcg gtgtctgggc gcagtaagag acttgttggc
    10741 ggtagatttc tggctttagt gtgctgacat cctcaccttc aaacagtaac gttccgctgg
    10801 ttgggctgat caatgaagca actattttta gcaacgtact tttgccacaa ccagaaggac
    10861 cggtaattaa cttaaattcg ccagcacgca gcgaaaaatt gatgttatta agaatcttcg
    10921 catcacccgc cagatatcct acgttttgta gctgaagcaa aggactattt tcctgcatcg
    10981 ctgttccctt tttctgattt ttactaaaaa cagtttatcc ttcgcaggaa taagggggaa
    11041 ctctctttca gtaatcaggt ataatttgtt taatcgagca gcaattttgc tgattatgga
    11101 cggtacaaca ggaggttttt ccgatgctta tctttatccc gattctcatt tttgtcgcgc
    11161 tggtcattgt cggcgcgggc gtcaaaatcg tgccgcaggg ctatcaatgg acggtagaac
    11221 gttttggtcg ctataccaaa acgttacagc cggggctcag tctggtggtg ccgtttatgg
    11281 atcgcattgg tcgcaagatc aatatgatgg agcaagtgct cgatatccct tcccaggaag
    11341 ttatctcgaa agataacgcc aacgttacca tcgacgcagt ctgttttatt caggtgattg
    11401 acgcgccacg cgctgcctat gaagtcagca atctggagct ggcgatcatc aacctgacca
    11461 tgactaacat ccgtaccgtg ttgggttcaa tggaacttga cgaaatgctc tctcagcgcg
    11521 acagcatcaa ctcacgcctg ctgcgtattg tcgatgaagc caccaacccg tgggggatta
    11581 aagtcacccg tattgaaatt cgcgacgtgc gcccaccggc agagcttatc tcttcaatga
    11641 acgcgcagat gaaagcggaa cgtaccaaac gcgcttacat tcttgaagcg gaagggatcc
    11701 gtcaggcgga aatcctcaaa gccgaaggtg aaaaacagtc gcaaatcctg aaagcggaag
    11761 gcgaacgtca gtcggcgttt ttacaggctg aagcgcgtga acgttccgcc gaagcagaag
    11821 cccgcgccac caaaatggtg tctgaagcta tcgcctccgg tgatattcag gcggtgaact
    11881 acttcgtagc gcagaaatac accgaagcgt tacagcagat cggttcctcc actaacagca
    11941 aagtagtgat gatgccatta gaggccagca gcctgatggg gtcgattgcc gggattgccg
    12001 aactggtgaa agacagcgcc aacaaacgga ctcagccatg atggagttaa tggtcgttca
    12061 tccacatatt ttctggctca gtctcggcgg tttgctgctg gcagccgaga tgctgggcgg
    12121 aaatggttat ttgttgtgga gcggcgtggc agcggtgatt accggcctgg tggtctggct
    12181 ggtgccgctg ggttgggagt ggcaaggggt aatgtttgcc atcctgacgc tgctcgccgc
    12241 ctggctgtgg tggaaatggt tgtcgcggcg ggtgcgcgaa caaaagcaca gcgatagtca
    12301 tttaaaccag cgcgggcagc agctgattgg ccgacgtttt gtgctggaat ctccgctggt
    12361 caacgggcgc ggtcatatgc gcgtcggtga cagttcatgg cctgtcagcg ccagcgagga
    12421 tctcggtgca ggtacgcatg ttgaagtcat tgcgatagaa gggataaccc tacatatccg
    12481 agccatctcg tcttaatcac cctgcccgat gatgacagca gccggagaga ttttcgataa
    12541 tcgggcagtc ggcgctgtca tcgccagggc aggcattcgc cagtgccagc agctggtcgc
    12601 gcatggattg cagctcctca atgtgtcgtt cgatctccgc caccttctcc agcgtgcgcc
    12661 gtttgacgtc ggcgctgtgc cgctgcgggt cgttaaacag attcaccagc tcgccgctct
    12721 cttccaggtt aaagcccacc tgccgtgcct ggcgcagtaa ggtcagttcg ttgagatgct
    12781 gctgcgtgta ggtgcgataa ccgttttcgc tgcgcatcgg cggcgtcacc agccccttct
    12841 cttcatagaa gcgaatggct ttgctagtca ggccggtaat ttttgctaca tcgctgatgt
    12901 tcatcgttcg cgcaacgcct cctgtgcttt gttaaagggt ttcaacagat attcaagcac
    12961 gtttttttgc cagtgcgaat atcgaccgcc accacaataa tacaggaagt actgcgcaca
    13021 gagagatgtt atacggtttt attgcgcttc atgaccattg ccacaataag gctgagtaag
    13081 agtgagccaa taatccatat caacgcacgg ctaccctggg accacagact gtagataaag
    13141 ccaacgatca ccaacaacat caccaacgta ccaacgataa gaatcggcaa cgaggcgtga
    13201 atatcatgac gcaggcggat cgccaccaca aacaccgcca ggtagcaaat caaaaaggtg
    13261 gcgctggcaa cgctggcgag tgagcctaaa ttcagtgccg ccgtcatcag cataatcaac
    13321 accacgacaa tgatgttgcc ccaggtactc tgccgccaca gggatttatt cattagcttc
    13381 ggcagttcgc gttcgctgcc catgttgtcc atgatgttaa acacggcgaa caggttcgcg
    13441 ttaatggctg aagccgtcgc cagtaaagcg ccgatgacga cgatcacata acccacatgt
    13501 ccgagcagcg gaaaagcagc ctgcgctacg gcggtatcgg catatttttc taactctaat
    13561 gccgatacat cgctaagcaa aaccagtgcc agcgagatat aaagcaacgt ggtaacgcca
    13621 atcgccacca gaaacgcccg tggcataatg acctgcggat ctttcacttt atccgccgcg
    13681 ttcgccatca tgccaaagcc cgcataggca aggaaagtta tcccaataca ggagaagaac
    13741 gcaccggagc tggggggcgc agagacggaa atatgcgctg gttgcagcga ccagacaccg
    13801 gcaataatca gcaataacag gatcatcatt ttaatgccga cgaggatcac ttccagccgc
    13861 cctaccgcat ggttgcttaa ggagttgaaa agcgtcatca ccgcaatgct ccccaacgcg
    13921 tagagcaaaa taaggtgctc ctcctggctg ccttcatgca aaaactgcac ggcataagcg
    13981 ccaaaagcat gggcgaccat ggcgatgctc accgccagcg tcaacaggta cagtaacgag
    14041 agcgccagcg aaaagacgcc gttgcctaat ccgcgacgaa agaagtcgat aatgccgcca
    14101 ttactgggat agctcgcccc cagacgcgca taggcataac cggaaaacat cgccacaata
    14161 ccgccaaaag caaaggcgac ccaggtcgag gcttccatta gcaacgcagc ctgccccagc
    14221 agcgcgaaga tccccgcccc caccattgcc ccaataccga tggaaacgac attccataga
    14281 ccgaggggtt tgttaccgtt attaccttcc gtgttcatca tgatcagccc ttaaacacgt
    14341 tatagccgag ttgcttagcg accgatgcca ccattttttg accgcgaaca ctgttacctt
    14401 cttcgtccag cggtggtgag aacgcggcaa ttcccatcac gccagggacg accgccagaa
    14461 taccgccacc tacaccgctt ttgcccggta aaccaacgcg atacgcccag tcaccggagc
    14521 gaccatacag cccttccatc atcatttcgg ccagaatgta cggcacgttg tcggcctgaa
    14581 gaacgcgttt atgcgtcagt ggattcagac cacccgccgc cagcgtcgcg ccaagcgttg
    14641 ccagttcaac agtattgatg agcgtggagc actgacgggt gtacacgtca caggcttcca
    14701 ttgcatcaca atagagatat ccggcggagt acagcagcca ggctatggcc cggttatgga
    14761 agttggttgt ttgttccgac tggttgactt cgtcagagag cgctacctgc tcaccagcca
    14821 gttgctgttg gatatgtaaa attcgctgcc agcgttgttc aatattttca gcgttaatca
    14881 ggctggtggt ggcaatagcg ccagcattta ccagtggcga aagcggtttg ccgccatgca
    14941 actctaaggc gataactgag ttaaagggca atccggtcgg gtcagcgcca attttgtcct
    15001 gtaccgcctg cgggccgaca tcttctaacg caagggctaa cgtacagact ttcgagatgg
    15061 attccagtgc aaagcggtaa tcactgtcac ccgcactata gacgttgcca tcgcaggtca
    15121 cgatagccac tgccgccagt tgacctggta cattcgccag aaagggaatg taatcggcat
    15181 tttgtccgcc gttaagtgag tgaaattggg tgtaagcctg atccactgcc tgctgtaatt
    15241 tgtttgcatc taacatcttt tgttaactcc tttttataga tgcgggaggt aattcctcac
    15301 cccggtgccg attttcaggc atcctgattt aacttagcac cagcaactta actacaggaa
    15361 aacaaagaaa taaatgtcta atcctgatgc aaatcgagcc gattttttaa tctttacgga
    15421 cttttacccg cctggtttat taatttcttg accttcccct tgctggaagg tttaaccttt
    15481 atcacagcca gtcaaaactg tcttaaagga gtgttttatg tcacaaacta tcgacctgac
    15541 cctggacggc ctgtcctgcg gtcactgcgt taaacgcgtg aaagaaagtc tcgaacagcg
    15601 cccggatgtg gaacaagcgg atgtgtctat cactgaagcg cacgttaccg ggactgccag
    15661 tgcagaacag ctgatcgaaa ccatcaaaca agcgggttat gacgcatctg taagccaccc
    15721 aaaggctaaa ccgctggcgg agtcatcaat cccgtcggaa gcactgacag cggtttctga
    15781 ggcgcttccg gcagcgaccg ccgatgacga tgacagccag cagttgctgc tgagcggcat
    15841 gagctgcgcc agctgtgtca cccgcgtaca aaatgcgctg caaagcgtac cgggcgtcac
    15901 tcaggcacgg gtaaacctgg cggagcgtac tgcgctggtg atgggcagtg cctccccaca
    15961 agatttagtg caggcggtgg aaaaagcggg ctacggcgcg gaagcgattg aagatgacgc
    16021 gaaacgccgc gagcgccagc aggaaaccgc cgtcgctacg atgaagcgct tccgctggca
    16081 ggcgattgtc gcactggcgg tgggtattcc ggtaatggtc tgggggatga tcggcgataa
    16141 catgatggtc accgctgaca accgcagcct gtggttagtt atcggcctga taaccctggc
    16201 ggtaatggtt ttcgccggcg ggcattttta ccgcagcgcg tggaaaagcc tgctgaacgg
    16261 tgcggcgacg atggatacgc tggtggcgct gggtacgggt gtggcgtggc tctattcgat
    16321 gagcgtcaac ctgtggccgc agtggttccc gatggaagcg cggcatcttt actatgaagc
    16381 cagtgcgatg attatcggtc tgattaatct cggccatatg ctggaagcgc gcgcgcgtca
    16441 gcgttcttct aaggcgctgg agaaattact cgatttaacc ccaccgacgg cgcgagtggt
    16501 caccgcagag ggtgaaaaaa gcgtgccgct ggcggaagtt cagccaggga tgttactgcg
    16561 cctgacgacc ggcgatcgcg tgccggtaga tggcgagatt acccagggcg aagcatggct
    16621 ggatgaagcg atgctgacgg gcgaaccaat cccgcagcaa aaaggcgaag gcgaaagcgt
    16681 ccatgccggg acagtggtac aggacggtag cgtgctattt cgcgccagtg cggttggcag
    16741 ccataccacg ctgtcaagga ttattcgcat ggtgcgccag gcccagagca gcaagccaga
    16801 aatcggtcag ctggcggata aaatctcagc cgtatttgtg ccggtagtag tggtgattgc
    16861 gctgatcagt gcagcaatct ggtatttctt tggtccggca ccgcagattg tctataccct
    16921 ggtgatagcc accacggtgc tgattattgc ctgtccgtgt gcgctggggc tggcgacgcc
    16981 aatgtcgatt atttccggcg tcgggcgggc ggctgagttt ggcgtgctgg tgcgggacgc
    17041 cgacgcgctg caacgcgcca gtacactcga taccgtcgtg ttcgataaaa ccgggacgct
    17101 gaccgaaggg aagccgcagg ttgtcgcagt aaaaacattt gctgatgttg atgaagcgca
    17161 agcattgcgt ctggcggcgg cgctggagca aggttccagc catccgctgg cacgagcgat
    17221 cctcgataaa gcaggcgata tgcagctgcc gcaggtcaac ggtttccgca cattgcgcgg
    17281 gctgggcgta agcggtgaag ctgaaggtca tgcgttattg ctgggtaatc aggcgctgtt
    17341 aaatgaccag caagtcgata ctaaagcgat tgaagccgat atttcagctc aggcatcgca
    17401 aggagcaacg cctgtgctgc tggcgattga cgggaaagta gtagccctgc tggctgtacg
    17461 cgatccgttg cgtagtgata gcgtggcggc gctgcaacgc ctgcataaag cgggatatcg
    17521 tctggtgatg ttgaccgggg ataacccaac caccgccaat gcgatcgcca aagaagcagg
    17581 gattgatgag gtgatcgccg gggtgctgcc agacggtaaa gccgaagcga tcaaacgtct
    17641 gcaaagtgaa ggacgtcagg tggcaatggt gggcgacggc attaacgacg cgccagcgct
    17701 ggctcaggcg gatgtcggta ttgcgatggg tggcggcagt gatgttgcca ttgaaaccgc
    17761 ggcgattacc ctgatgcgcc atagcctgat gggtgttgca gatgcgctcg cgatttcccg
    17821 cgcaacgctg cgcaatatga agcagaacct gctcggtgcg tttatctaca acagcattgg
    17881 tattccggtc gccgctggta ttttgtggcc gtttactgga acactgctta acccggtagt
    17941 tgccggagcg gcaatggcgc tctcgtcgat taccgtagtg agtaacgcca accggttgct
    18001 gcggtttaaa ccgaaggaat aagtacgtca ttgcggatgc gctgctttag ggcggcgcat
    18061 ttggcatcga cgcatgactg ccggatgcgg cgtaaacgcc ttatccggcc tacggttcag
    18121 gcacaggttt gtaggcctga taagacgggt aagcgtcgca tcaggcaatg gtgctcggat
    18181 gccggatgcg gcgtgaacgc cttatccggc ctacgagatg aagcgatgtt ttggccttac
    18241 gcgacctttt ttgcacgctc ttcacggcgt gccaaatatt cagccactgt ttcaatccgt
    18301 cccaattctt cctgggtgcg catgttgttt tcaacttccc aaagatcaac tgccgcctgg
    18361 aggtttagcc aaaaatcgac tgtggtatca aaaactttcg ccagacggaa tgccatctca
    18421 gtggtgagtt tacgattatt attgatcagt gtactgacgc tattacgatg aacatgcagc
    18481 aactctgcta actcattgat tttcaaatcg agcggttcca gatattcata gagaagaata
    18541 tctccgggtg tcgtcggttt tcttgttgcc tgtttcatgg tttttaactg ttgcttccct
    18601 gtgaatagcg atgcaagaac atactgaatc atacaaacac attaaacaag tccccaactc
    18661 catttgcgcc atccctcacc gcgcgctagc atgatatttc acaaagggag gtcgtatgga
    18721 tctgttgtac cgggtaaaaa cgctttgggc cgcgctgcgc ggtaatcatt acacctggcc
    18781 tgccatcgat atcacccttc ccggcaatcg ccattttcat ctgattggca gtattcatat
    18841 gggtagccac gatatgactc ccctgcacac ccgtttgctc aaaaagctca aaaacgccga
    18901 tgcgctgatc gtcgaggcgg atgtttccac cagcgatacg ccttttgcta atttgcctac
    18961 ttgcgaggcg ctggaagagc gcattaacga ggagcaactc caaaatctgc agcacattag
    19021 ccaggagatg ggcatttctc cgtcgctctt ttctactcaa ccgctgtggc aaatcgcgat
    19081 ggttcttcag gcgacgcagg cacaaaaact ggggctgcgg gcagaatacg gtatcgatta
    19141 ccagttattg caggcggcga agcaacaaca taaacccgtg attgaactgg aaggggctga
    19201 aaaccagatt accatgttgc tccagctccc tgacaaagga ctggcgctgc tggacgatac
    19261 gctgacccac tggcatacca acgcacggtt gctgcaacaa atgatgagct ggtggctgaa
    19321 tgcacctccg caaaataatg atataacgct gcccaatacg ttcagtcagt cgctgtacga
    19381 tgtgctgatg catcagcgaa atctcgcctg gcgggataaa ttacgcgcca tgccgccggg
    19441 gcgatatgtg gtcgcggtcg gtgcactaca cctgtatgga gaagggaatt tgccgcaaat
    19501 gttgcgctaa aaaaatggcc aatatcgcta ttggcccgtc aaagaggaat ttcatttttt
    19561 tattattatg ccgtcacttt aagcgacggt gtaactcgat tgtcgctcaa tctcaccatc
    19621 ctgccaatac tcttaggcaa gatgactctt ttttttggac caccatcagg cgtatgcttg
    19681 cttcgttttt ttgtttaagg caggaaaatt accatgacac ccgcagttaa attactcgaa
    19741 aaaaacaaga tttcgtttca aatccatacc tacgagcacg atccggctga aaccaatttt
    19801 ggcgatgaag tcgtcaaaaa attaggtttg aatccggatc aagtctacaa aacgctactg
    19861 gtggcagtga acggtgatat gaaacatctg gcagtggccg ttacgccggt cgcaggtcaa
    19921 ctggatctta aaaaagtagc aaaagcgctg ggtgccaaga aagttgagat ggccgatccg
    19981 atggccgcgc agcgttcgac gggatacctg gttgggggga ttagcccact ggggcagaaa
    20041 aaacgtctgc cgacgattat cgacgccccc gcacaagaat ttgccactat ttatgtttct
    20101 ggcggcaagc gcggactgga tatcgaactg gcggcaggcg atctggcgaa gatcctcgat
    20161 gccaaatttg ctgatatcgc ccgccgcgat taagcattgt gccggatgca aatatccggc
    20221 actttcggat tactgccagc tcacctcacc tttcggttca taaacactca catccagcgg
    20281 cgagcttttc tggatatacg ctttcagcac ttcggcatca ataaagccgg tattcacata
    20341 gcccggtttg ttatcaaggc gcggatagcc atcaccgccg gtggcattga agtttaatgt
    20401 cgccatacgg taagttttcg ccggatcgac cggttcgcct ttgattttca ggtcgttgag
    20461 tttgccgtct ttcgtcacaa agctaacgtt ggcaaattgc gggtaggcac ctgaatctgg
    20521 cttcatttgt gtgacggcgg tcaggtaatc aatcacctct ttaccggtca tgtcggcata
    20581 caccaccaca ttgccgaatg gctgcacttt cagtacgttt ttatagctga tatcgcctgc
    20641 ttcgatagaa tcacgaattc ctcctccact catcaccgca aattcggcac cagtgcgatc
    20701 catttgggct gccagaatca accgccccat attggtctgt acaaaacgca ctttgtcacg
    20761 atcgccttcc agacgaccat tggtttcgcc tattttcact tccaactgcg ctttgccttt
    20821 gttctggaac ggcgataaca gcgagatcat ttgctggttc tcagcgattt caggagtgta
    20881 aagcacgcgc tcgcttttcc cgtcttccca ggtcactttc ttcttcaggt tcaccggaat
    20941 cagctggtag ttaaccattt tcatttcgcc attacgaaac tcaaaatcag cccgtcccac
    21001 gtatttgccc cactcatgcg cctgcacaat ccagatgccg ttttgttgat ctggtttgca
    21061 tggcgtaccc ggcacgtaat cgacctgttt tttgttttct gccgccatgc agaccggagc
    21121 ttgcgagtga ccaccgacga tcatcgccag cgatccggca ggcagcgcgc gtgccatctc
    21181 cacatcgccc ggtgcgttag agccgtgctc accattatcg taatgcccca tatgggtcgc
    21241 cgcgataata atgtctggct tttctgtctg ttgcagctcc tgaatcacca gcttcgcttc
    21301 atcggcgggc ttacgaaatt cgacatcagt gaagtattcc gggttaccaa tttttgctgt
    21361 gtcatcggtt gtcagcccaa tgacggcaat tttcagatcc tgacgcttaa acagcgccca
    21421 tggtttaaac aggcgctcgc cggtactttt ctgatagata ttcgcggaaa gcaacgggaa
    21481 cttggcccac ttttcctgct ggcgtaatac ggtgagcgga ttatcaaatt catgattacc
    21541 gatcgccatc gcgtcatagc ccaccagatt cataccgcga aaatcaggtt cggcatcctg
    21601 taagtcagac tcgggcacgc cagtgttaat gtcgccaccg gaaagtagca gcacgctacc
    21661 gccttcagcc gcaacctctt tgcggatacc atccaccagc gttttttgcg ccgccagacc
    21721 atattcgcca tattcattgc gccaaaaatg cccatgatga tcattggtat gcagaactgt
    21781 aattttgtag gttttatcct gctcatacgc cagagcagtt tcactcgcca gtgtaaatgt
    21841 ggttaacagc gctaacgcca cgccccgctg caataatttc atacttctct ccctgacctg
    21901 atttcaacgt gttgaaaaat agtatgacgc aacatcatag acaagtctgc gtccggtgaa
    21961 gataaatctg catccagatt agaaattctg tattcggcgt tgagacttcc ttcaggcgac
    22021 gcatacaggt atgttagtcg ggtaataatc acaaataaga tcattcttta catcgcaacc
    22081 ctgaaaaagt gactttccta tggcaatgag tgaacaaacc cagcctgtgg cgggcgcggc
    22141 tgcgtcaacg accaaggccc gaacatcgtt tggtatttta ggtgctatca gcctctcaca
    22201 tctgctgaac gacatgatcc aatcgctgat tctggcgatt tatcctctgc ttcagtcaga
    22261 attttctctg acatttatgc agattggcat gataaccctc accttccagc tcgcctcttc
    22321 gctactgcaa ccagtggtcg gctactggac cgataaatat ccgatgccgt ggtcgttgcc
    22381 aattggcatg tgctttacct taagtggtct ggtgctgctt gcgctggcgg gcagttttgg
    22441 cgcagttctg ctggcggcgg cgctggtcgg taccggttca tcggtctttc atccggaatc
    22501 ttctcgcgta gcccgtatgg cttccggcgg gcggcatggc ctggcgcaat ctatctttca
    22561 ggtcggcggc aactttggca gttccctggg acccttgctg acggcggtga ttatcgcgcc
    22621 ttatggcaaa ggcaacgttg cctggtttgt gcttgcggca ctgctggcga tcgtggtgtt
    22681 ggcgcaaatt agccgttggt actcggcaca gctccgaatg aataaaggaa aacccaaagc
    22741 gacgataatc aatccactgc cgcgcaacaa agtggtactg gcagtcagca ttctgttaat
    22801 cctcattttc tcgaaatatt tctatatggc gagcatcag
//
LOCUS       DADMHM010000049        22790 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.050, whole genome shotgun sequence.
ACCESSION   DADMHM010000049 DADMHM010000000
VERSION     DADMHM010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22790)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22790)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22790
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.050"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..939)
                     /gene="dacD"
                     /locus_tag="JN125_001666"
     CDS             complement(<1..939)
                     /gene="dacD"
                     /locus_tag="JN125_001666"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase DacD"
                     /protein_id="HAY8871481.1"
                     /translation="MKRRLIIAASLFVFNLSSGFAAENIPFSPQPPEIHAGSWVLMDY
                     TTGQILTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRITPDDIVTVGRDAWAKDNPVF
                     VGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQRQFVEMMNNYAEKLH
                     LKDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSGKSLTWNGITQQNRN
                     GLLWDKTMNVDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGADSAKGREEEARKLLR
                     WGQQNFTTVQILHRGKKVGTERIWYGDKENIDLGTEQ"
     gene            1148..2575
                     /gene="sbcB"
                     /locus_tag="JN125_001667"
     CDS             1148..2575
                     /gene="sbcB"
                     /locus_tag="JN125_001667"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease I"
                     /protein_id="HAY8871482.1"
                     /translation="MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIG
                     EPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGY
                     NNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
                     LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLM
                     ALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDS
                     DTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNL
                     KILRENPQVREKVVAIFAEAEPFMPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLP
                     ALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQML
                     VQQYADDKEKVALLKALWQYAEEIV"
     gene            complement(2618..2845)
                     /locus_tag="JN125_001668"
     CDS             complement(2618..2845)
                     /locus_tag="JN125_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000985274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HAY8871483.1"
                     /translation="MAIKKLDVVTQVCPFPLIEAKAALAEMASGDELVIEFDCTQATE
                     AIPQWAAEEGHAITDYQQIGDAAWSITVQKV"
     gene            complement(2859..3788)
                     /locus_tag="JN125_001669"
     CDS             complement(2859..3788)
                     /locus_tag="JN125_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000275009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeeE/YedE family protein"
                     /protein_id="HAY8871484.1"
                     /translation="MVLCWDLSCSVGVFALIQAGLLTYEAGAFPWLGTVIGGYIFGLG
                     IVLAGGCATGTWYRAGEGLIGSWIALFTYMVMSAVMRSPHASGLNQTLQHYSTEHNSI
                     AETFNLSVWPLVTVLLVITLWVVMKELKKPKLKVATLPPRRTGIAHILFEKRWHPFVT
                     AVLIGLIALLAWPLSEATGRMFGLGITSPTANILQFLVAGDVKYINWGVFLVLGIFVG
                     SFIAAKASREFRVRAADAQTTVRSGLGGVLMGFGASIAGGCSIGNGLVMTAMMTWQGW
                     IGLVFMILGVWTASWLVYVRPQRKARLATAAAN"
     gene            complement(3998..5356)
                     /gene="plaP"
                     /locus_tag="JN125_001670"
     CDS             complement(3998..5356)
                     /gene="plaP"
                     /locus_tag="JN125_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416518.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine/proton symporter PlaP"
                     /protein_id="HAY8871485.1"
                     /translation="MSHNVTPNTSRVELRKTLTLVPVVMMGLAYMQPMTLFDTFGIVS
                     GLTDGHVPTAYAFALIAILFTALSYGKLVRRYPSAGSAYTYAQKSISPTVGFMVGWSS
                     LLDYLFAPMINILLAKIYFEALVPSIPSWMFVVALVAFMTAFNLRSLKSVANFNTVIV
                     VLQVVLIAVILGMVVYGVFEGEGAGTLASTRPFWSGDAHVIPMITGATILCFSFTGFD
                     GISNLSEETKDAERVIPRAIFLTALIGGMIFIFATYFLQLYFPDISRFKDPDASQPEI
                     MLYVAGKAFQVGALIFSTITVLASGMAAHAGVARLMYVMGRDGVFPKSFFGYVHPKWR
                     TPAMNIILVGAIALLAINFDLVMATALINFGALVAFTFVNLSVISQFWIREKRNKTLK
                     DHFQYLFLPMCGALTVGALWVNLEESSMVLGLIWAAIGLIYLACVTKSFRNPVPQYED
                     VA"
     gene            complement(5346..5408)
                     /gene="yoeI"
                     /locus_tag="JN125_001671"
     CDS             complement(5346..5408)
                     /gene="yoeI"
                     /locus_tag="JN125_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein YoeI"
                     /protein_id="HAY8871486.1"
                     /translation="MGQFFAYATVITVKENDHVA"
     gene            complement(5623..6552)
                     /locus_tag="JN125_001672"
     CDS             complement(5623..6552)
                     /locus_tag="JN125_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416519.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY8871487.1"
                     /translation="MKPLLDVLMILDALEKEGSFVAASAKLYKTPSALSYTVHKLESD
                     LNIQLLDRSGHRAKFTRTGKMLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDT
                     FPFSLLAPLIEAFYQHHSVTRLKFINGVLGGSWDALTQGRADIIVGAMHEPPSSSEFG
                     FSRLGDLEQVFAVAPHHPLALEEEPLNRRIIKRYRAIVVGDTAQAGASTASQLLDEQE
                     AITVFDFKTKLELQISGLGCGYLPRYLAQRFLDSGALIEKKVVAQTLFEPVWIGWNEQ
                     TAGLASGWWRDEILANSAIAGVYAKSDDGKSAI"
     gene            complement(6598..7422)
                     /locus_tag="JN125_001673"
     CDS             complement(6598..7422)
                     /locus_tag="JN125_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAY8871488.1"
                     /translation="MKKVAIVGLGWLGMPLAMSLSARGWQVTGSKTTQDGVEAARMSG
                     IDSYLLRMEPELVCDSDDLDALMDADALVITLPARRSGSGDEFYLQAVQELVDSALAH
                     RIPRIIFTSSTSVYGDAQGMLKETTPRNPVTNSGRVLEELEDWLHNLPGTSVDILRLA
                     GLVGPGRHPGRFFAGKTAPDGEHGVNLVHLEDVIGAITLLLQAPKGGHIYNICAPAHP
                     ARNVFYPQMARLLGLEPPQFRNSLDSGKGKIIDGSRICNELGFEYQYPDPLVMPLE"
     gene            complement(7505..7759)
                     /gene="yoeB"
                     /locus_tag="JN125_001674"
     CDS             complement(7505..7759)
                     /gene="yoeB"
                     /locus_tag="JN125_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system mRNA interferase
                     toxin YoeB"
                     /protein_id="HAY8871489.1"
                     /translation="MKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGK
                     PEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAACRYHY"
     gene            complement(7756..8007)
                     /gene="yefM"
                     /locus_tag="JN125_001675"
     CDS             complement(7756..8007)
                     /gene="yefM"
                     /locus_tag="JN125_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YoeB-YefM toxin-antitoxin system antitoxin YefM"
                     /protein_id="HAY8871490.1"
                     /translation="MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEE
                     YNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKDIIE"
     gene            8290..8340
                     /gene="hisL"
                     /locus_tag="JN125_001676"
     CDS             8290..8340
                     /gene="hisL"
                     /locus_tag="JN125_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="his operon leader peptide"
                     /protein_id="HAY8871491.1"
                     /translation="MTRVQFKHHHHHHHPD"
     gene            8486..9385
                     /gene="hisG"
                     /locus_tag="JN125_001677"
     CDS             8486..9385
                     /gene="hisG"
                     /locus_tag="JN125_001677"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HAY8871492.1"
                     /translation="MTDNTRLRIAMQKSGRLSDDSRELLARCGIKINLHTQRLIAMAE
                     NMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFG
                     GCRLSLATPVDEAWDGPLSLNGKRIATSYPHLLKRYLDQKGISFKSCLLNGSVEVAPR
                     AGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMEESKQQLIDKLLTRIQ
                     GVIQARESKYIMMHAPTERLDEVIALLPGAERPTILPLAGDQQRVAMHMVSSETLFWE
                     TMEKLKALGASSILVLPIEKMME"
     gene            9391..10695
                     /gene="hisD"
                     /locus_tag="JN125_001678"
     CDS             9391..10695
                     /gene="hisD"
                     /locus_tag="JN125_001678"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HAY8871493.1"
                     /translation="MSFNTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVK
                     AHGDEALREYSAKFDKTTVTALKVSAEEIAAASERLSDELKQAMAVAVKNIETFHTAQ
                     KLPPVDVETQPGVRCQQVTRPVASVGLYIPGGSAPLFSTVLMLATPASIAGCKKVVLC
                     SPPPIADEILYAAQLCGVQDVFNVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAK
                     RQVSQRLDGAAIDMPAGPSEVLVIADSGATPDFVASDLLSQAEHGPDSQVILLTPAAD
                     MARRVAEAVERQLAELPRAETARQALNASRLIVTKDLAQCVEISNQYGPEHLIIQTRN
                     ARELVDSITSAGSVFLGDWSPESAGDYASGTNHVLPTYGYTATCSSFGLADFQKRMTV
                     QELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNALKEQA"
     gene            10692..11762
                     /gene="hisC"
                     /locus_tag="JN125_001679"
     CDS             10692..11762
                     /gene="hisC"
                     /locus_tag="JN125_001679"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HAY8871494.1"
                     /translation="MSTVTITDLARENVRNLTPYQSARRLGGNGDVWLNANEYPTAVE
                     FQLTQQTLNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDS
                     ILYCPPTYGMYSVSAETIGVECRTVPTLDNWQLDLQGISDKLDGVKVVYVCSPNNPTG
                     QLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFAL
                     AGLRCGFTLANEEVINLLMKVIAPYPLSTPVADIAAQALSPQGIVAMRERVAQIIAER
                     EYLIAALKEIPCVEQVFDSETNYILARFKASSAVFKSLWDQGIILRDQNKQPSLSGCL
                     RITVGTREESQRVIDALRAEQV"
     gene            11762..12829
                     /gene="hisB"
                     /locus_tag="JN125_001680"
     CDS             11762..12829
                     /gene="hisB"
                     /locus_tag="JN125_001680"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HAY8871495.1"
                     /translation="MSQKYLFIDRDGTLISEPPSDFQVDRFDKLAFKPGVIPELLKLQ
                     KAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQFDEVLICPHLPADECD
                     CRKPKVKLVERYLAEQAMDRANSYVIGDRATDIQLAENMGINGLRYDRETLNWPMIGE
                     QLTKRDRYAHVVRNTKETQIDVQVWLDREGGSKINTGVGFFDHMLDQIATHGGFRMEV
                     NVKGDLYIDDHHTVEDTGLALGEALKIALGDKRGICRFGFVLPMDECLARCALDISGR
                     PHLEYKAEFTYQRVGDLSTEMIEHFFRSLSYTMGVTLHLKTKGKNDHHRVESLFKAFG
                     RTLRQAIRVEGDTLPSSKGVL"
     gene            12829..13419
                     /gene="hisH"
                     /locus_tag="JN125_001681"
     CDS             12829..13419
                     /gene="hisH"
                     /locus_tag="JN125_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005128083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HAY8871496.1"
                     /translation="MNVVILDTGCANLNSVKSAIARHGYEPKVSRDPDVVLLADKLFL
                     PGVGTAQAAMDQVRERELFDLIKACTQPVLGICLGMQLLGRRSEESNGVDLLGIIDED
                     VPKMTDFGLPLPHMGWNRVYPQAGNRLFQGIEDGAYFYFVHSYAMPVNSWTIAQCNYG
                     EPFTAAVQKDNFYGVQFHPERSGAAGAKLLKNFLEM"
     gene            13419..14156
                     /gene="hisA"
                     /locus_tag="JN125_001682"
     CDS             13419..14156
                     /gene="hisA"
                     /locus_tag="JN125_001682"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310852.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HAY8871497.1"
                     /translation="MIIPALDLIDGTVVRLHQGDYGKQRDYGNDPLPRLQDYAAQGAE
                     VLHLVDLTGAKDPAKRQIPLIKTLVAGVNVPVQVGGGVRSEEDVAALLEAGVARVVVG
                     STAVKSPEMVKGWFERFGADALVLALDVRIDEQGNKQVAVSGWQENSGVSLEQLVETY
                     LPVGLKHVLCTDISRDGTLAGSNVSLYEEVCARYPQVAFQSSGGIGDINDVAALRGTG
                     VRGVIVGRALLEGKFTVKEAIACWQNA"
     gene            14138..14914
                     /gene="hisF"
                     /locus_tag="JN125_001683"
     CDS             14138..14914
                     /gene="hisF"
                     /locus_tag="JN125_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015853929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HAY8871498.1"
                     /translation="MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAKRYAEEGA
                     DELVFYDITASSDGRVVDKSWVSRVAEVIDIPFCVAGGIKSLDDAAKILSFGADKISI
                     NSPALADPTLITRLADRFGVQCIVVGIDTWYDAETGKYHVNQYTGDESRTRVTQWETL
                     EWVQEVQKRGAGEIVLNMMNQDGVRNGYDLEQLKKVREVCHVPLIASGGAGTMEHFLE
                     AFRDADVDGALAASVFHKQIINIGELKAYLATQGVEIRIC"
     gene            14908..15519
                     /locus_tag="JN125_001684"
     CDS             14908..15519
                     /locus_tag="JN125_001684"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HAY8871499.1"
                     /translation="MLTEQQCRELDWEKTDGLMPVIVQHAVSGKVLMLGYMNPEALDK
                     TIESGKVTFFSRTKQRLWTKGETSGNFLNVVSIAPDCDNDTLLVLANPIGPTCHKGTS
                     SCFGDTAHQWLFLYQLEQLLAERKSADPETSYTAKLYASGTKRIAQKVGEEGVETALA
                     ATVHDRFELTNEASDLMYHLLVLLQDQDLDLTTVIENLRKRHQ"
     gene            complement(15691..16677)
                     /gene="wzzB"
                     /locus_tag="JN125_001685"
     CDS             complement(15691..16677)
                     /gene="wzzB"
                     /locus_tag="JN125_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416531.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS O-antigen chain length determinant protein
                     WzzB"
                     /protein_id="HAY8871500.1"
                     /translation="MRVENNNVSGQNHDPEQIDLIDLIDLLVQLWRGKMTIIISVIVA
                     IALAIGYLAVAKEKWTSTAIVTQPDVGQIAGYTNAMNVIYGSAVPKVSDIQASLIGRY
                     STAFSALAETLDNQEEAEKLTIEPTVKNQSLPLAVSYVGETPEGAQKQLAKYIQQVDD
                     QVNEELEKDLKDNIALRMKNLQDSLKTQEVVAQEQKDLRIRQIQEALQYANQAQVTKP
                     QVQQTEDVTQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLD
                     IHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK"
     gene            complement(16824..16916)
                     /locus_tag="JN125_001686"
                     /pseudo
     CDS             complement(16824..16916)
                     /locus_tag="JN125_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416532.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 6-dehydrogenase"
     gene            17086..18090
                     /locus_tag="JN125_001687"
     CDS             17086..18090
                     /locus_tag="JN125_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015572392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase"
                     /protein_id="HAY8871501.1"
                     /translation="MKFLVTGAAGFIGFYVSKRLLAAGHQVVGIDNLNDYYDVNLKQA
                     RLDLLKHDNFSFYKIDLADREKMAALFADERFDRVINLAAQAGVRYSLENPNAYADAN
                     LIGFLNVLEGCRHNNVQHLLYASSSSVYGMNRKMPFSTDDSVDHPVSLYAATKKANEL
                     MAHTYSHLYGLPTTGLRFFTVYGPWGRPDMALFKFTKAMLEGKSIDVYNFGKMKRDFT
                     YIDDIAETIIRLQDVIPEKDPQWAVETGSPATSSAPYRVYNIGNSSPVELMDYINALE
                     EALGIEANKNMMPLQPGDVLETSADTKALYDVIGFKPETSVKEGVKNFVEWYRNFYKV
                     "
     gene            complement(18156..19322)
                     /gene="ugd"
                     /locus_tag="JN125_001688"
     CDS             complement(18156..19322)
                     /gene="ugd"
                     /locus_tag="JN125_001688"
                     /EC_number="1.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005227854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 6-dehydrogenase"
                     /protein_id="HAY8871502.1"
                     /translation="MKITISGTGYVGLSNGILIAQNHEVVALDIVQAKVDMLNKKLSP
                     IVDKEIEEYLATKELNFRATTDKYDAYKNADYVIIATPTDYDPKTNYFNTSSVEAVIR
                     DVTEINPNAVMIIKSTIPVGFTESIKERFGIENVIFSPEFLREGKALYDNLHPSRIVI
                     GEQSERAERFAALLQEGAIKQDIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYA
                     ESLGLNSRQIIEGVCFDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYQSVPNNLISAI
                     VDANRTRKDFIADSILARKPKVVGVYRLIMKSGSDNFRASSIQGIMKRIKAKGVPVIV
                     YEPAMKEDDFFRSRVVRDLDAFKQEADVIISNRMSADLADVADKVYTRDLFGND"
     gene            complement(19571..20977)
                     /gene="gndA"
                     /locus_tag="JN125_001689"
     CDS             complement(19571..20977)
                     /gene="gndA"
                     /locus_tag="JN125_001689"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000043504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent phosphogluconate dehydrogenase"
                     /protein_id="HAY8871503.1"
                     /translation="MSKKQIGVIGMAVMGRNLALNIESHGYTVSIFNRSREKTEKIIA
                     THSDKKLFPYYTIKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGN
                     TFFLDTIRRNRELSAEGFNFIGSGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIA
                     AVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQT
                     FTEWNNGELSSYLIDITKDNFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEP
                     LSLITESVFARYISSLKEQRVAASKVLSGPQAQPAGDKAEFIEKVRRALYLGKIVSYA
                     QGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDAYAENPQIANLLLAPY
                     FKQIADDYQQALRDVVAYAVQNGIPVPTFAAAVAYYDSYRAAVLPANLIQAQRDYFGA
                     HTYKRIDKEGVFHTEWLD"
     gene            complement(21829..22632)
                     /locus_tag="JN125_001690"
     CDS             complement(21829..22632)
                     /locus_tag="JN125_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001597949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HAY8871504.1"
                     /translation="MSTDKYLVSVITPTYNSERTIRCTIDSVLSQSYNNIEMIIVDDC
                     SLDNTVSICREYQKKDSRVVLISNEKNYGAGMSRNIAISKAKGRFIAFLDSDDFWHKE
                     KIKKQIDFMLSNNYAFTYTSYQKVSFSGKLLSQINPVSKVNYSELLKTNVIGCLTAVY
                     DTSSLGKMFMPTIRKRQDMALWLSILDKIDYAYCLNEILAYYRVGTDTLSSNKLKIIF
                     SQWAFYRKYLKFGLFKSLYYFSHYAVNAVAKHHINPLCLFFKRHFASWR"
BASE COUNT         6143 a         5667 c         5308 g         5672 t
ORIGIN      
        1 ttgttccgtt cccaggtcga tattttcttt atcgccatac cagatgcgtt ccgttccgac
       61 ctttttccca cggtgcaaaa tttgcaccgt agtaaagttt tgttgccccc aacgcagtaa
      121 ttttcttgcc tcttcctcac gaccttttgc actgtcagcc cccattacca ctgcaatgag
      181 acgacgctgc ccatctacag ccgaagcaat gagattaaac ccggcaccag aagtatgacc
      241 cgttttcagg ccgtcaacat tcatggtttt atcccacaac aacccgttac ggttttgctg
      301 ggtgataccg ttccaggtga gacttttccc actgtacata tgataaaact cgggctcgcc
      361 gtggatgata gcacgagaaa gcacagctaa atcataagcc gagctatgct ggccaggtgc
      421 atccagacca tgcactgttt caaaatgcgt atccttgaga tgcagcttct cggcatagtt
      481 gttcatcatt tcaacaaact gccgttgccc accggcaata tagtcagcca gagcaacaca
      541 agcgtcattt ccggaatcca caattaaacc acggcttaaa tcacgtaccg atacgcgatc
      601 gccctctttc aaaaacatca gtgaagaacc gacaaacacc ggattatctt tcgcccacgc
      661 atcgcgcccc acggtgacaa tatcgtctgg cgtaatgcga tgactatcga tagcgcgatc
      721 cacgacataa cccgtcatca gctttgtcag gctggcggga ttgcgctgtt gatgctcatt
      781 acccgcggtg aggatctgac cggtggtgta atccatcaat acccaggacc cggcatgaat
      841 ctctggaggc tgaggtgaaa aaggaatgtt ttccgccgca aaaccagacg ataagttaaa
      901 aacgaacaaa gaagcagcaa taataagacg gcgtttcaac agcaaaccct caggagtttc
      961 aaatagctgt tctttttacg gaaatactta tgaactggct ggaataaagt gcaagaaaat
     1021 gtgactaccc tctcattttt atctgacatg atctgttgcc actcgctgcc aaattgtggc
     1081 gctaaagctg attagcacgg tgatatttga tactctggca gacagcagaa ataacggatt
     1141 taacctaatg atgaatgacg gtaagcaaca atctaccttt ttgtttcacg attacgaaac
     1201 ctttggcacg caccccgcgt tagatcgccc tgcacagttc gcagccattc gcaccgatag
     1261 cgaattcaat gtcatcggcg aacccgaagt cttttactgc aagcccgctg atgactattt
     1321 accccagcca ggagccgtat taattaccgg tattaccccg caggaagcac gggcgaaagg
     1381 agaaaacgaa gccgcgtttg ccgcccgtat tcactcgctt tttaccgtac cgaagacctg
     1441 tattctgggc tacaacaatg tgcgtttcga cgacgaagtc acacgcaaca ttttttatcg
     1501 taatttctac gatccttacg cctggagctg gcagcatgat aactcgcgct gggatttact
     1561 ggatgttatg cgtgcctgtt atgccctgcg cccggaagga ataaactggc ctgaaaatga
     1621 tgacggtcta ccgagctttc gccttgagca tttaaccaaa gcgaatggta ttgaacatag
     1681 caacgcccac gatgcgatgg ctgatgtgta cgccactatt gcgatggcga aactggtaaa
     1741 aacgcgtcag ccacgtctgt ttgattatct ctttacccat cgtaataaac acaaactgat
     1801 ggcgttgatt gatgttccgc agatgaaacc cctggttcac gtttccggaa tgtttggggc
     1861 atggcgcggc aataccagct gggtggcacc gctggcgtgg catccagaaa atcgcaatgc
     1921 cgtaattatg gtggatttgg caggagacat ttcgccatta ctggaactgg atagcgacac
     1981 attgcgcgag cgtttatata ctgcaaaagc cgatcttggc gataacgccg ccgttccggt
     2041 taagctggtg catatcaata aatgtccggt gctggcccag gcgaatacgc tacgcccgga
     2101 agatgccgac cgactgggaa ttaatcgtca gcattgcctc gataacctga aaattctgcg
     2161 tgaaaatccg caagtgcgcg aaaaagtggt ggcgatattc gcggaagccg aaccgtttat
     2221 gccttcagat aacgtggatg cacagcttta taacggcttt ttcagtgacg cagatcgtgc
     2281 agcaatgaaa attgtgctgg aaaccgagcc gcgtaattta ccggcactgg atatcacttt
     2341 tgttgataaa cggattgaaa agctgttgtt caattatcgg gcacgcaact tcccggggac
     2401 gctggattat gccgagcagc aacgctggct ggagcaccgc cgccaggtat tcacgccaga
     2461 gtttttgcag ggttatgctg atgaattgca gatgctggta caacaatatg ccgatgacaa
     2521 agagaaagtg gcgctgttaa aagcactttg gcagtacgcg gaagagatcg tctaatttga
     2581 agcctccgcc gctggtacgg cggaggacaa tgttgagtca gactttttga acggtgatgc
     2641 tccacgctgc atcgccaatc tgctgataat cggtgatggc atgtccttct tctgccgccc
     2701 actgtgggat tgcttcagtt gcctgggtgc aatcaaactc aattaccaac tcatcgccgc
     2761 tggccatttc tgccagtgct gcttttgctt ctatgagtgg aaacggacag acctgcgtca
     2821 ccacatccag ctttttaatc gccatcttta caccttactt aatttgccgc agcagtcgcc
     2881 agtcgtgcct tacgctgtgg tcgtacatac acaagccagg acgcagtcca gactccgaga
     2941 atcataaata caaggccaat ccagccctgc caggtcatca ttgcagtcat gaccagtcca
     3001 ttaccgatag agcaaccacc tgcaatgctg gcaccgaagc ccataagcac accacctaac
     3061 ccgctacgta ctgttgtttg tgcatcagct gcgcgaacgc ggaactcacg gctcgctttg
     3121 gctgcaataa atgaccccac gaagatccct aacaccagga aaacgcccca gttaatgtat
     3181 ttcacgtcac ctgcgaccag aaattgcaga atattggccg ttggggaagt gattcctaac
     3241 ccaaacatgc gtccggttgc ttcactcagg ggccaggcta aaagcgcaat caaaccgatg
     3301 agtacagcag tgacaaaggg atgccagcgt ttttcaaaca gaatatgagc gatcccggtt
     3361 cggcgcggcg gtaaggtcgc gactttgagt tttggcttct tcaactcttt catcaccacc
     3421 cagagcgtta tcaccagcaa aacggtaacc aacggccaca cagacaaatt aaaagtctca
     3481 gcaatagagt tatgttcagt actgtagtgc tgcaaggttt gatttaaacc actggcatgt
     3541 ggagaacgca tcaccgcact catcaccata taagtgaaaa gcgcgatcca actgccgatc
     3601 aatccctcac ccgcgcgata ccaggtcccg gtggcacatc cacccgccag aacaattccc
     3661 agcccgaaga tatacccacc tataacagta ccaagccacg ggaacgcccc ggcttcgtaa
     3721 gtcagtaggc ccgcctgaat taacgcaaaa acccccacgc tgcatgacaa atcccagcag
     3781 agcaccacaa attagcccgc ttaatatcat tgaaaacata aattaattaa ccagatgaat
     3841 gttaataggg aaattattca tgactggtgg aatgcagacc aataaccaaa ttctctaaat
     3901 tagaacaaat ggttattaat gaggatttcg ataaaaaaga ataaaaaaac cggagccaaa
     3961 taatcattcg actccggttt gttattagaa aagatgatta tgcaacgtct tcgtactgcg
     4021 gaaccgggtt acggaagctc ttggtgacgc aagccaggta aatcagaccg atagccgccc
     4081 agatcagacc cagaaccatt gagctttctt ccaggttaac ccacagcgca ccgacggtca
     4141 gcgcaccaca catcggcagg aacagatact ggaagtgatc tttcagcgtc ttgttacgct
     4201 tctcacggat ccagaactgc gagataaccg acaggttaac gaaggtgaac gccaccaacg
     4261 caccaaagtt aatcagcgcc gtagccatta ccaggtcgaa gttgattgcc agcagggcaa
     4321 tcgcgccaac caggatgatg ttcatcgccg gagtacgcca tttcgggtgt acataaccga
     4381 agaagctttt cgggaatacg ccgtcacgcc ccattacgta catcagacgc gcaacacctg
     4441 cgtgcgccgc cataccggac gccagtacgg taatggtgga gaagatcagc gcaccaacct
     4501 ggaatgcttt acctgccacg tacagcatga tttcaggctg tgacgcatcc ggatctttaa
     4561 agcgagagat atccgggaag tacagctgca ggaagtaagt tgcaaagatg aagatcatgc
     4621 cgccaatcag cgcggtcagg aaaatcgcac gcgggatcac gcgctctgca tctttggttt
     4681 cttccgacag gttgctgatg ccgtcaaagc cggtaaagga gaagcacagg attgtcgccc
     4741 cggtaatcat cgggataaca tgcgcatcgc cagaccagaa cggacgagtg ctcgccagcg
     4801 taccagcgcc ttcaccttca aatacgccat aaacaaccat gcccagaatc accgcgatca
     4861 gcactacctg caacacgacg attacagtgt tgaagttcgc tacggatttc agactacgca
     4921 ggttaaaggc ggtcataaag gccaccagcg ccaccacaaa catccacgat gggatggaag
     4981 gcaccagagc ttcaaaataa attttcgcca gcagaatgtt gatcatcggc gcgaacagat
     5041 agtcgagcag agaagaccaa cccaccataa agccgacagt cgggctaatg gatttctggg
     5101 cgtaagtgta tgcagagcca gcagaaggat agcggcgaac cagcttcccg tagctcagag
     5161 ccgtaaacag gatcgcaatc aatgcgaacg cataggctgt cggcacatga ccatccgtga
     5221 ggcctgaaac gataccaaaa gtatcaaaca gcgtcatcgg ctgcatatag gcaagaccca
     5281 tcattacaac cggaactaac gtaagcgttt tacgcaattc cacgcgagag gtgtttggag
     5341 taacgttatg cgacatggtc attctccttt acggtgataa ccgtcgcgta agcaaaaaat
     5401 tgccccattt ttttggattc ctcagcgaca acaactgtcg atttttagta aatatctatc
     5461 cggtacgaag cccggcctct tggtatgaat gattggtttg aagcaaaaaa taaccgacgc
     5521 tgatgaaacg tcggttttta gtcatttttt gacagcggcg cattgtgcct aaatgggggg
     5581 gaaatgacaa gagaatgaga ggcttgtcat aataattttt ctttaaatgg ctgattttcc
     5641 gtcatcagat tttgcataaa caccggcgat cgcactattt gctaaaattt catctcgcca
     5701 ccagccgctg gcaaggcctg cggtctgttc gttccagcca atccagacgg gttcaaagag
     5761 agtttgggcg accactttct tctcgattaa cgcgccacta tcgagaaaac gttgcgccag
     5821 ataacggggt aaatagccgc agccgaggcc gctaatttgc agctccagtt tggttttaaa
     5881 atcgaaaacg gtaatggctt cttgttcgtc gagaagttgt gaggccgtag aagcgcctgc
     5941 ctgcgcagta tcccccacca caatcgcccg atatcgctta ataatacgac gatttaacgg
     6001 ctcttcttcc agggctaacg gatgatgagg cgcgacggca aagacttgtt ccagatcgcc
     6061 caaccgtgaa aaaccaaact cactggaaga tggtggctca tgcatcgcgc caacaataat
     6121 atccgctcgc ccctgagtca gggcatccca tgaaccaccg agtacgccat tgataaactt
     6181 caggcgcgtc acgctatgat gttgataaaa agcttcaatc agtggcgcaa gcagagaaaa
     6241 aggaaacgtg tcgtccacgc caatcaccag ctcgttttcc cagccttcat gcagtttgat
     6301 cgcctgcttt tccagttccc gcacggtatg cagaacttcc cgccctttct ctaataacat
     6361 ttttccggtg cgggtgaatt tagcgcggtg accgctacga tcaagcaatt gaatattaag
     6421 gtcgctttcc agcttgtgaa cggtgtaact cagagcggac ggcgtcttgt agagtttggc
     6481 cgacgccgcc acaaaactgc cttctttttc taaggcatcg aggatcatca acacatccag
     6541 cagtggtttc atacacgccc ccttgcagtg tatgcggcgt cctgctggcg tgatcgttta
     6601 ctccagcggc attaccagcg gatcgggata ctggtattca aatcccagtt cattacaaat
     6661 ccgactgcca tcaataatct tacctttgcc gctgtccaga ctatttctga actgcggagg
     6721 ttccagcccc agtaaacggg ccatctgcgg atagaaaaca ttacgcgcag ggtgagctgg
     6781 cgcacatata ttatagatgt gtccgccttt aggtgcctgt aacaacagag tgatagcgcc
     6841 aataacatct tctaaatgga ctaaattaac accatgttca ccatcaggcg cggtttttcc
     6901 ggcaaagaag cgtccgggat gacgccccgg tccgaccagg cccgcaagac gcagaatatc
     6961 gaccgaagta ccgggtaaat tgtgcaacca gtcttcgagt tcttctaata ctcgtccact
     7021 gttggttacc ggattacgcg gggtagtttc tttcaacatg ccttgcgcat cgccatagac
     7081 agatgttgag ctggtaaaaa taattcgggg aatacgatgg gccagcgcgc tatccactaa
     7141 ctcttgtacc gcttgtaaat agaactcatc gccggagccg ctacgacgtg ccggaagcgt
     7201 aatgaccagt gcatcggcat ccatcagggc atccagatcg tcagaatcgc aaactaactc
     7261 aggctccatg cgaagcagat agctatcaat gccactcatt cgggccgctt cgacaccatc
     7321 ttgtgtggtt ttactcccgg tgacttgcca gcctcgcgct gaaagtgaca tcgccagcgg
     7381 catgcctaac caccctaacc cgacaattgc gacctttttc atccgttatc tcctgataca
     7441 ccttagatct ataaggctac gctagcgtat caaaactgac aattcattct atgaatgaat
     7501 ctgttcaata atgataacga catgctgcaa tgagcagtga atcgtcggta accgcgtata
     7561 ccagacggtg ctcctctgta atgcgtcggg accagaaacc tgacaaatta tgtttcaggg
     7621 gttctggctt ccccttacct tcaaatggcg ttctgcgggt atctttgata agttcattga
     7681 tctttttaac aattcgctta tctgtttcct gccagtacag ataatcatcc catgattcct
     7741 cagaccagat tagtttcact caataatgtc cttttctgtt cctttgcctg atttcaggct
     7801 atcgattgag tccatcaatc tccgggcgtt agcgggggaa cgcagtagat aagccgtctc
     7861 ttccagcgag ttgtattctt cgagtgacat cagaacacaa gcctctccat tctgacgagt
     7921 aataaggata ggggcatgat cttcaacggc tttcatcatt gttgccgaca aattctgacg
     7981 cgcttcgctg tagctaattg tacgcatgtc aatctcctct tttgtacagt tcattgtaca
     8041 atgatgggcg ttaattaact atttattaat tagtttgtag atcaaggtat tgtcagtgag
     8101 acgaaaatcc aggcttcgct atttttggtg ccgtcagctt agaggacagt cctcttagcc
     8161 ccctcctttc cccgctcatt cattaaacaa atccatcgcc ataaaatata taaaaaagcc
     8221 cttgctttct aacgtgaaag tggtttaggt taaaagacat cagttgaata aacattcaca
     8281 gagactttta tgacacgcgt tcaatttaaa caccaccatc atcaccatca tcctgactag
     8341 tctttcaggc gatgtgtgct ggaagacatt cagatcttcc agtggtgcat gaacgcatga
     8401 gaaagccccc ggaagatcac cttccggggg cttttttatt gcgcggttga taacggttca
     8461 gacaggttta aagaggaata agaaaatgac agacaacact cgtttacgca tagctatgca
     8521 gaaatccggc cgtttaagtg atgactcacg cgaattgctg gcgcgctgtg gcattaaaat
     8581 caatcttcac acccagcgcc tgatcgcgat ggcagaaaac atgccgattg atattctgcg
     8641 cgtgcgtgac gacgacattc ccggtctggt aatggacggc gtggttgatc tcgggattat
     8701 cggcgaaaac gtgctggaag aagagctgct taaccgccgc gcccagggtg aagatccacg
     8761 ctactttacc ctgcgtcgtc tggatttcgg cggctgccga ctttcactgg caacgccggt
     8821 tgatgaagcc tgggatggcc cgctctcctt aaacggtaaa cgtatcgcca cctcttatcc
     8881 tcacctgctc aagcgttatc tcgaccagaa aggtatctct tttaaatcct gcttactgaa
     8941 cggttctgtt gaagtcgccc cgcgtgccgg actggcggat gcgatttgcg atctggtttc
     9001 caccggtgcc acgctggaag ctaacggcct gcgcgaagtc gaagttatct atcgctcgaa
     9061 agcctgcctg atacaacgcg atggcgaaat ggaagaatcc aaacagcaac tgatcgacaa
     9121 actgctgacc cgtattcagg gtgttatcca ggcgcgtgaa tcaaaataca tcatgatgca
     9181 cgcaccgacc gaacgtctgg atgaagtcat cgccctgctg ccaggtgccg aacgcccaac
     9241 tattctaccg ctggcgggtg atcaacagcg cgtagcgatg cacatggtca gtagcgaaac
     9301 cctgttctgg gaaacgatgg aaaaactgaa agcgctgggt gccagttcaa tcctggtcct
     9361 gccgattgag aagatgatgg agtgatcgcc atgagcttta acacaatcat tgactggaat
     9421 agctgtactg cggagcaaca acgccagctg ttaatgcgcc cggcgatctc cgcttctgaa
     9481 agcattaccc gcactgttaa cgatattctc gataacgtga aagcacacgg cgatgaggcc
     9541 ctgcgggaat acagcgcgaa gtttgataaa accacggtta ccgcactgaa ggtgtctgct
     9601 gaggaaattg ccgccgccag cgaacgcctg agcgacgagc taaaacaggc gatggcggtg
     9661 gcagtgaaga atattgaaac cttccacact gcgcaaaaac tgccgccggt agatgtagaa
     9721 acgcagccag gcgtgcgttg ccagcaggtc acgcgcccag tcgcttcagt tgggttgtat
     9781 attcctggcg gctccgcccc gctcttctca acggtattaa tgctggcgac tccggcgagt
     9841 attgcgggct gtaaaaaagt ggtgctgtgc tcaccgccgc cgattgccga tgagatcctt
     9901 tatgcggcgc agctgtgcgg tgtgcaggac gtgtttaacg tcggcggcgc acaggccatt
     9961 gccgcactgg cgtttggtac ggaatctgtg ccaaaagtgg acaaaatctt cgggccgggt
    10021 aacgcctttg tcaccgaagc gaaacgtcag gtgagccagc gtctggacgg tgcggcgatc
    10081 gatatgcccg caggcccgtc ggaagtgctg gtgattgctg acagcggcgc tacgccggat
    10141 ttcgtggctt ctgatttgct ctctcaggct gaacacggcc cggactcaca ggtgatttta
    10201 ctgacgcccg ctgctgatat ggcgcgtcgc gttgccgagg ccgtcgaacg ccagttggca
    10261 gaactgccgc gtgccgaaac cgcccgccag gcactgaacg ccagccgcct gatcgtgact
    10321 aaagatttag cgcagtgcgt ggagatctcc aaccagtacg gcccggagca cctgatcatt
    10381 cagacccgca acgcccgtga actggtcgat agcatcacca gcgccggttc ggtatttctt
    10441 ggtgactggt caccggaatc ggcaggtgat tacgcctccg gcaccaacca cgttctaccg
    10501 acttacggtt acaccgccac ctgttccagc ttcgggctgg cagatttcca gaagcgcatg
    10561 accgtacagg aactgtcgaa agaggggttc tccgcgctgg cttcaaccat agaaacactg
    10621 gccgccgccg agcgcctgac cgcccacaaa aatgccgtta ctttgcgtgt taacgccctt
    10681 aaggagcaag catgagcacc gtgactatta ccgatttagc gcgtgaaaac gtccgcaacc
    10741 tgacgccgta tcagtcggcg cgtcgtctgg gcggtaatgg cgacgtctgg ctgaacgcca
    10801 acgaatatcc cacagccgtg gagtttcagc ttactcagca aacgctcaac cgctacccgg
    10861 aatgtcagcc gaaagcggtg attgaaaatt acgcgcaata tgcaggcgta aaaccggaac
    10921 aggtgctggt cagccgtggc gcggacgaag gtattgaact gctgatccgc gctttttgcg
    10981 aaccgggtaa agactccatc ctctactgcc caccaacgta cggcatgtac agcgtcagcg
    11041 ccgaaacgat tggcgtcgag tgccgcacag tgccgacgct ggacaactgg caactggact
    11101 tacagggcat ttccgacaag ctggacggcg taaaagtggt ctatgtttgc agccccaaca
    11161 acccgaccgg gcaactgatc aatccgcagg attttcgcac cctgctggag ttaacccgcg
    11221 gtaaggcgat tgtggttgcc gatgaagcct atatagagtt ttgcccgcag gcatcgctgg
    11281 ctggctggct ggcggaatat ccgcacctgg ctattttgcg cacactgtcg aaagcttttg
    11341 ctctggcggg ccttcgttgc gggtttacgc tggcaaacga agaagtcatc aacctgctga
    11401 tgaaagtgat cgccccctac ccgctctcga cgccggttgc cgacattgcg gcccaggcgt
    11461 taagcccgca gggaatcgtc gccatgcgcg aacgggtagc gcaaattatt gcagaacgcg
    11521 aatacctgat tgccgcactg aaagagatcc cctgcgtgga gcaggttttt gactctgaaa
    11581 ccaactacat tctggcgcgc tttaaagcct ccagtgcagt gtttaaatct ttgtgggatc
    11641 agggcattat cttacgtgat cagaataaac aaccctcttt aagcggctgc ctgcgaatta
    11701 ccgtcggaac ccgtgaagaa agccagcgcg tcattgacgc cttacgtgcg gagcaagttt
    11761 gatgagtcag aagtatcttt ttatcgatcg cgatggaacc ctgattagcg aaccgccgag
    11821 tgattttcag gtggaccgtt ttgataaact cgcctttaaa ccgggcgtga tcccggaact
    11881 gctgaagctg caaaaagcgg gctacaagct ggtgatgatc actaatcagg atggtctggg
    11941 aacacaaagt ttcccacagg cggatttcga tggcccgcac aacctgatga tgcagatctt
    12001 cacctcgcaa ggcgtacagt ttgatgaagt gctgatttgt ccgcacctgc ccgccgatga
    12061 gtgcgactgc cgtaagccga aagtaaaact ggtggaacgt tatctggctg agcaagcgat
    12121 ggatcgcgct aacagttatg tgattggcga tcgcgcaacc gacattcaac tggcggaaaa
    12181 catgggcatt aatggtttac gctacgaccg cgaaaccctg aactggccga tgattggcga
    12241 gcaactcact aaacgagacc gttacgccca tgtagtgcgc aacaccaaag agacgcaaat
    12301 tgatgtccag gtgtggctgg atcgcgaagg tggcagcaag attaacaccg gtgttggctt
    12361 ctttgatcac atgctggatc agatcgccac ccacggcggt ttccgcatgg aagtcaacgt
    12421 caaaggcgac ctctatatcg acgatcacca caccgtcgaa gataccggcc tggcgctggg
    12481 cgaagcgtta aaaattgccc tcggcgataa acgcggtatt tgccgctttg gttttgtgct
    12541 gccgatggac gaatgccttg cccgctgtgc actggatatc tctggtcgcc cgcacctgga
    12601 atataaagcc gaatttacct accagcgcgt gggcgatctc agcaccgaaa tgatcgagca
    12661 cttcttccgt tcgctctcat acaccatggg cgtgacgttg cacctgaaaa ccaaaggtaa
    12721 aaacgatcat caccgtgtag agagtctctt taaagccttt ggtcgcaccc tgcgccaggc
    12781 catccgcgtg gaaggcgaca ccctgccctc gtcgaaagga gtgctgtaat gaacgtggtg
    12841 atcctggata ccggctgcgc caacctgaac tcggtgaagt ctgccattgc gcgtcacggt
    12901 tatgaaccca aagtcagccg tgacccggac gtcgtgttgc tggccgataa actattttta
    12961 cccggcgttg gcactgcaca agcagcgatg gatcaggtgc gtgagcgcga gctgtttgat
    13021 ctcatcaaag cctgtaccca accggtgctg ggcatctgct tagggatgca actgctgggg
    13081 cggcgcagcg aagagagcaa cggcgtcgat ttgctgggca tcatcgacga agacgtgccg
    13141 aaaatgaccg actttggtct gccactgcca catatgggct ggaaccgcgt ttatccgcag
    13201 gcaggcaatc gcctgtttca ggggattgaa gacggcgcgt acttttactt tgttcacagt
    13261 tacgcaatgc cggtcaattc gtggaccatc gcccagtgta attacggcga accgttcacc
    13321 gcggcggtac aaaaagataa cttctacggc gtgcagttcc acccggagcg ttctggtgcc
    13381 gctggcgcta agctgctgaa aaacttcctg gagatgtgat gattattccg gcattagatt
    13441 taatcgacgg cactgtggtg cgtctccatc agggtgatta cggcaaacag cgcgattacg
    13501 gtaacgaccc gctgccgcgc ttacaggatt acgccgcgca gggtgccgaa gtgctgcacc
    13561 tggtggatct gaccggggca aaagatccgg ctaaacgtca aatcccgctg attaaaaccc
    13621 tggtggcggg cgttaacgtt ccggtgcagg ttggcggcgg cgtgcgtagc gaagaagacg
    13681 tggcggcgtt gctggaagca ggcgttgcgc gcgtggtggt cggttccacc gcggtgaaat
    13741 caccagaaat ggtgaaaggt tggtttgaac gtttcggtgc cgatgcctta gtgctggcgc
    13801 tggatgtccg tattgacgag caaggcaaca agcaggtggc agtcagcggc tggcaagaga
    13861 actcgggcgt ttcactggaa caactggtgg aaacctatct gcccgtcgga ctgaaacatg
    13921 tgctgtgtac cgatatctcg cgcgacggca cgctggcagg ttctaacgtc tctttatatg
    13981 aagaagtgtg cgccagatac ccgcaggtgg catttcagtc atccggcggc attggcgaca
    14041 ttaacgatgt tgctgccctg cgtggtacgg gcgtgcgcgg cgtaatagtt ggtcgtgcat
    14101 tactggaagg taaattcacc gtgaaggagg ccatcgcatg ctggcaaaac gcataatccc
    14161 atgtctcgac gttcgtgatg gtcaggtggt gaaaggcgta cagtttcgca accatgaaat
    14221 cattggcgat atcgtgccgc tggcaaaacg ctacgctgaa gaaggcgctg acgaactggt
    14281 gttctacgat atcaccgctt ccagcgatgg ccgtgtggta gataaaagct gggtatctcg
    14341 cgtggcggaa gtgatcgaca ttccgttctg tgtggcgggt gggattaaat cgctggatga
    14401 cgccgccaaa attctttcct ttggcgcgga taaaatctcc attaactccc ctgcgctggc
    14461 ggacccgacg ttaattactc gcctggccga tcgctttggc gtgcagtgta ttgtggtcgg
    14521 tattgatacc tggtacgacg ccgaaaccgg taaatatcat gtgaatcaat ataccggcga
    14581 tgaaagccgc acccgcgtta ctcagtggga aacactcgag tgggtacagg aagtgcaaaa
    14641 acgcggtgcc ggagaaatcg tcctcaacat gatgaatcag gacggcgtgc gtaacggtta
    14701 cgatctcgaa caactgaaaa aagtgcgtga agtttgccac gtcccgctga ttgcctccgg
    14761 tggcgcaggc accatggaac acttcctcga agccttccgc gatgccgacg ttgacggcgc
    14821 gctggcagct tctgtattcc acaaacaaat aatcaatatt ggtgaattaa aagcgtacct
    14881 ggcaacacag ggcgtggaga tcaggatatg ttaacagaac aacaatgtcg cgaactggac
    14941 tgggaaaaaa ccgacggact gatgccggtg attgtgcaac acgcggtatc cggcaaagtg
    15001 ttaatgctgg gctatatgaa cccggaagcc ttagacaaaa ccatcgaaag cggcaaagtc
    15061 accttcttct cgcgcactaa acagcgactg tggaccaaag gcgaaacatc gggcaatttt
    15121 ctcaatgtgg tgagtattgc cccggactgc gacaacgaca cgttactggt gctggcgaat
    15181 cccatcgggc caacctgcca caaaggcacc agcagctgct tcggcgacac cgctcaccag
    15241 tggctgttcc tgtatcaact ggaacaactg ctcgccgaac gtaaatctgc cgacccggaa
    15301 acctcctaca ctgccaaact gtatgccagc ggcaccaaac gcattgcgca gaaagtgggc
    15361 gaagaaggcg tggaaaccgc actggcagca acggtacatg accgctttga gctgaccaac
    15421 gaggcatctg atttgatgta tcacctgctg gtgctgttgc aggatcagga tctggattta
    15481 acgacggtaa ttgagaacct gcgtaaacgg catcagtgag ttactgggta agcggatgcg
    15541 atgttgttgt cgcatccgga gccatagccc gatgcgcaag cttatcgggc cgactattct
    15601 ctctgcacac gtaagctgga tacatcgcat ccggcaaaaa aaacgggcaa ggtgtcacca
    15661 ccctgcccgt tttctttaaa gctgcaaaga ttatttcgcg ttgtaattac gcagcgcatt
    15721 acgccccagc acaatccccg cgccaaccat gccgcccagc agcaccgcca gaatcaaggt
    15781 aattgccttt ttcgggctat cgcgacgaat aggtaacatc ggtttcatca cataacggta
    15841 agcatgaata tcaagatcat caacctttaa gctttcgata tccagcaggt tttgacgagt
    15901 ctgatagtag tttggcgaga acaccaacgg acgggtcgcc tcatgcttaa tcatcgactc
    15961 cagcgcttcg ctccccaaaa ggaacaacgt atcttgtgtc acatcttcag tctgctgaac
    16021 ttgtggcttt gtcacctgcg cctgattcgc atactgcaac gcttcctgaa tctgacggat
    16081 acgcagatct ttctgctcct gcgcgaccac ttcctgggtt ttcagagagt cctgcaagtt
    16141 tttcatacgc agcgcgatgt tatctttcag gtctttttcc agttcttcat tgacctggtc
    16201 gtcaacttgc tggatatact tcgccagctg tttctgcgca ccttcaggtg tttcacccac
    16261 ataagaaacc gctaacggta atgactgatt tttaacggta ggctcaatgg tcagcttttc
    16321 tgcttcttcc tggttatcca gcgtttccgc taatgctgag aatgcagtgc tgtaacgtcc
    16381 gataagtgaa gcctgaatgt cggagacttt cggtacagct gatccgtaga tcacattcat
    16441 cgcgttggta taaccagcga tttgccccac atcaggttga gtaacgatag ctgtggaagt
    16501 ccacttttct ttggcaacgg ccagataccc tatagccagg gcaatagcca caatgacaga
    16561 aatgatgata gtcatcttgc cgcgccatag ttggaccagt aaatcaatca aatcaatcaa
    16621 atcaatctgt tccgggtcat ggttttgccc agaaacatta ttattttcta ctctcatcat
    16681 taccctaacg gacgaaataa ttttaagtcg ccatagttta gcgataatcg ccatgaatgc
    16741 tataggataa atgataaaaa taatgaatta ttacaaaggg aacataagag aatcagggcg
    16801 aaaatcgccc tgataacaag atgttagtcg ctaccaaaga gatcgcgggt gtagacttta
    16861 tctgccacat ccttaagctc ttctgccatt cggttggaaa taatgacatc ggcttgtata
    16921 gtcagtttag aacagctttg attgtaaaat gagcacgtta ccagaaaaaa cagccaggtt
    16981 tagaactgat accgattatc tttttttctt gtctaacggt atgatttaac tttcagttat
    17041 gccagatgaa gattggctat attctagcct gagcgaggat tataaatgaa atttctggtt
    17101 acgggagctg ctggctttat cggtttctat gtaagtaaac ggcttcttgc agctggtcat
    17161 caggttgtag ggattgacaa cttaaatgat tattacgatg tcaacctcaa acaagcacga
    17221 cttgatttac tcaagcacga caatttcagt ttttataaaa ttgacctagc cgatcgtgag
    17281 aaaatggcgg cactgtttgc agacgagcgg ttcgatcgcg taataaacct cgctgcgcaa
    17341 gccggtgtac gttactccct tgaaaatccc aatgcatatg cagatgcaaa cctgattgga
    17401 ttcctgaacg tactggaagg atgtcgccat aataatgttc agcatctact ctacgcttcc
    17461 tccagttctg tttatggcat gaaccgcaag atgcctttct ctacagatga ctctgtagat
    17521 catcctgttt cgctttatgc agcaactaaa aaagcgaatg aactcatggc ccatacctat
    17581 tctcatttgt atggcttacc gaccacaggg ctgcgtttct ttacggttta tggtccatgg
    17641 ggacgtccgg atatggcact atttaaattc actaaagcca tgctggaagg taaaagcatt
    17701 gatgtttaca acttcggcaa aatgaagcgt gattttactt atattgatga tattgccgaa
    17761 actattattc gcttacagga tgttattcca gaaaaagatc cacagtgggc tgtagaaaca
    17821 ggctcgcctg caacaagttc agcaccatat cgtgtctata acattggtaa tagttcgcct
    17881 gtagagttga tggactatat caatgcgtta gaagaggctc tgggtattga agccaacaaa
    17941 aatatgatgc ctctccaacc cggtgatgta ctggaaacca gtgctgatac aaaagcactg
    18001 tatgacgtaa taggattcaa acccgaaacg tcagttaaag agggggtaaa gaactttgta
    18061 gaatggtatc gtaacttcta taaagtttga ttttacaaaa ccataagaaa aggccctaat
    18121 ttattagggc cttttcttag aatgaaacaa aataattaat cattgccaaa caagtcgcgc
    18181 gtataaactt tatctgctac atcagccaga tcggcagaca tacggttaga aataataaca
    18241 tcagcttctt gtttgaatgc atccaaatca cgtaccacgc gcgaccggaa aaaatcgtcc
    18301 tctttcatcg ctggctcata aacgattaca ggaacgcctt tcgccttgat tcgcttcata
    18361 ataccctgaa tcgaggaagc acgaaaattg tctgaaccac tcttcataat caaacgatag
    18421 acgccaacaa ctttcggttt acgtgcaagg atagaatcgg caataaagtc ttttcgcgtg
    18481 cggttggcat caacaattgc cgaaatcaga ttattcggca cagattgata gtttgccagt
    18541 aactgcttgg tatctttcgg cagacaataa cctccataac caaatgacgg attgttgtag
    18601 tgattaccga tacgcggatc aaagcaaacc ccctcaataa tctggcggga attaagcccc
    18661 agactttcag cataactatc tagttcattg aaataagcta cacgcatcgc cagataggtg
    18721 ttggcaaaaa gtttaatcgc ctcagcttcc gttgagtcag taaacaacgt tggaatatct
    18781 tgcttaatag caccttcttg taataatgct gcaaaacgtt cagcgcgttc agactgctca
    18841 ccaatcacaa tgcgtgatgg atgcaagtta tcataaagtg ctttcccttc gcgtaaaaac
    18901 tccggcgaaa agatcacatt ttcaatacca aatcgttctt taatggactc tgtaaaacca
    18961 acagggatag ttgattttat aatcattaca gcgttgggat taatttctgt cacatcacgg
    19021 atgaccgctt ccacgcttga ggtattaaaa taatttgttt ttgggtcata atcggtaggc
    19081 gtggcaataa taacgtaatc ggcattttta tacgcgtcat acttatctgt cgtagcgcgg
    19141 aaattgagct ctttagtcgc cagatactct tcaatctcct tatcaacaat cggtgacagc
    19201 ttcttgttaa gcatgtccac tttggcctga acgatatcca atgccaccac ttcgtgattt
    19261 tgcgcaatca gaataccatt tgaaagacca acataacctg tacctgaaat tgttattttc
    19321 attagctctg acttcttccg attaaacatt tagagtggtc attaatccac caccataact
    19381 tcatctactg cgggatttta aacgctgatg tagatgaaca gtcaaggcag cgatcctgct
    19441 gtgcggctct gtattatatc tcttttttaa cccaaaatta taaaaaaagt ccataacctg
    19501 ccgctttgta taataaaaaa gcccggagga tttctccggg gtttgcattg attagttgat
    19561 ttaaatcaga ttaatccagc cattcggtat ggaacacacc ttctttatca atgcgcttat
    19621 aagtatgtgc accgaaatag tcacgctgtg cctggatcag gttcgcagga agaacagcgg
    19681 cgcggtagct gtcataatag gcaaccgcag cggcgaaggt cggaaccggg ataccgttct
    19741 gtaccgcata agcgacgaca tcgcgcagcg cctgctggta gtcatcggca atttgcttga
    19801 aatacggagc cagcagcagg ttagcgatct gcggattttc ggcataagca tcggtgattt
    19861 tctgcaggaa ctgcgcacgg ataatgcagc cagcacggaa aatcttcgcg atttcgccat
    19921 agttcagatc ccagttgtac tcttcagacg cagcacgcaa ctgagagaag ccctgggcgt
    19981 aagaaacgat tttgcccaga tacagagcac gacgaacttt ttcgatgaac tcagccttgt
    20041 cgcctgctgg ctgcgcttgc ggaccagaca gtactttgga cgcggcaaca cgctgctctt
    20101 tcagagaaga gatgtatcgt gcaaacacag actcggtaat gagcgacagc ggttcaccga
    20161 gatctagcgc gctttggctg gtccatttac cggtaccttt gttagccgct tcatccagaa
    20221 tcacatcaac caggtagtta ccatcttcat cttttttagt gaagttgtct ttggtgatgt
    20281 cgatcaggta gctgcttagt tcaccattat tccactcggt aaaggtctgc gccagttctt
    20341 cgttggtgag gttcaggcca cctttaagca gagaataggc ttcagcaatc agctgcatat
    20401 ctccgtattc aataccgttg tgaaccatct tcacatagtg acctgcgcca tcggcaccaa
    20461 tataggtaac acatggctcc ccatcttcag ccactgcggc gattttggtc aggatcggtg
    20521 cgaccagttc ataggcttct ttctggccac ctggcatgat ggaaggtcct ttcagcgcac
    20581 cttcttcacc accagaaaca ccgctaccga taaagttaaa gccttctgca gacagctcac
    20641 ggttacgacg aatggtgtct aggaagaagg tgttaccacc atcaatgatg atgtcacctt
    20701 tatcgaggta tggcttgaga gaatcaatag cagcatccgt gcctgcacct gctttcacca
    20761 ttaacaggat gcgacgaggc gtttccagag attcaacaaa ctcttttatt gtatagtaag
    20821 gaaataactt cttatccgaa tgagtagcta taattttttc tgttttttca cgagaacggt
    20881 taaaaattga aacagtatag ccgtgacttt cgatatttag tgcaagatta cgccccatta
    20941 ccgccatacc gataacccca atctgttttt ttgacatttt cactcctatt taattagcag
    21001 aataataaac gtattgaaac acatataaaa atatgtcata tggaaaatat tgcattaaga
    21061 caaacaacag ataattgtat atgtaattaa acttatatta aattaattac agaaaatact
    21121 caaaactaac gttgctctcc acactctagt ttccagtgtc tcagactaac tattattaat
    21181 agtctccgcg atatataaga gatttaactg ccatgcctca aatatatctt tcaactcact
    21241 tatattttat aaattacaat aatcgagagt caaattatca acctcaaaat aattttgaca
    21301 aacaacgagg ctgttggtgt ttccagaata ctcaaattgg ttctattcgt catatgtact
    21361 aaaaccttaa agccaatgaa atatatctta acacagtcat ctaataacca tatgatagcc
    21421 accaatgaat ttagaaaaaa taaaacttaa gactgttcct gactctgaag ttttatacaa
    21481 cacaaataat gcaatgaact attctatact tttaagtaaa ataaagacaa tctttatcat
    21541 aatactaagt tcattcgcac caattaacct cagaattcat ttcaatgata actaaaggct
    21601 ttataaaaat aattcttcag gagaggcact tggtaaacat aattttacta aatagattgc
    21661 agattataat ctgatacaaa aacattaatc acacttcttg tccacacaga cccacatttc
    21721 cctattctat tgaaattcac ttaaaactca tccatgacat catcaaatat aaaaatacat
    21781 ttgcaaatca aaagcattat ccaatatttc tttataagat ttgccgaatt atctccaaga
    21841 ggcaaagtgg cgcttaaaaa acaaacacag cggatttata tgatgtttgg caacagcatt
    21901 aacagcatag tgggagaaat aataaagaga tttaaacaga ccaaacttta aatattttct
    21961 gtaaaaggcc cattgtgaaa atattatttt taatttattt gacgagagtg tatcggtgcc
    22021 tactcgatag taggccagta tttcgttcaa acaatatgca taatcaattt tatctaaaat
    22081 gctcagccat agtgccatgt cctgtctttt cctgattgtt ggcataaaca ttttaccaag
    22141 agatgaagta tcatatacag ctgtcaagca acctattaca ttagtcttta ataattcaga
    22201 ataattaact ttagaaacag gattaatttg ggataaaagt ttcccgctaa aactaacctt
    22261 ttgatatgag gtataagtga aagcataatt atttgaaagc ataaagtcta tctgtttttt
    22321 tattttctct ttatgccaaa aatcatcact atctaaaaaa gcgataaacc gacctttagc
    22381 tttactgatc gctatatttc ttgacatacc agccccataa ttcttctcat ttgaaatgag
    22441 aacaactctt gaatcttttt tttgatattc cctgcaaata gacactgtat tatctaacga
    22501 acaatcatcg acaataatca tttctatatt attatatgat tgagatagaa cagaatcaat
    22561 tgtacatcta atcgttcttt cagaattata tgtgggtgtt atgactgaaa ctaaatattt
    22621 atcggtactc atagaatcat ctcaaactta cataagtttc attatataat atcatgttta
    22681 tcatatccat ccttggtagc ttattaagaa atttcacata ttaaatattt atcaagtatt
    22741 tcattaacat cccaccctaa tataaaaagc cgttaattaa gagagtaact
//
LOCUS       DADMHM010000050        22476 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.051, whole genome shotgun sequence.
ACCESSION   DADMHM010000050 DADMHM010000000
VERSION     DADMHM010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22476)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22476)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22476
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.051"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            96..1208
                     /gene="potF"
                     /locus_tag="JN125_001691"
     CDS             96..1208
                     /gene="potF"
                     /locus_tag="JN125_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     substrate-binding protein PotF"
                     /protein_id="HAY8871505.1"
                     /translation="MTALNKKWLSGLVAGALMAVSVGTLAAEQKTLHIYNWSDYIAPD
                     TVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLD
                     KSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSW
                     DLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLR
                     PNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAF
                     FDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYANANKAATPLVSAEVRENPG
                     IYPPADVRAKLFTLKVQDPKIDRVRTRAWTKVKSGK"
     gene            1303..2436
                     /gene="potG"
                     /locus_tag="JN125_001692"
     CDS             1303..2436
                     /gene="potG"
                     /locus_tag="JN125_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000996010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine ABC transporter ATP-binding subunit
                     PotG"
                     /protein_id="HAY8871506.1"
                     /translation="MNDAIPRPQAKTRKALTPLLEIRNLTKSYDGQHAVDDVSLTIYK
                     GEIFALLGASGCGKSTLLRMLAGFEQPSAGQIMLDGVDLSQVPPYLRPINMMFQSYAL
                     FPHMTVEQNIAFGLKQDKLPKAEIASRVHEMLGLVHMQEFAKRKPHQLSGGQRQRVAL
                     ARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAG
                     RIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGVLKERHEDGLVLYSPGLV
                     HPLKVDADASVVDNVPVHVALRPEKIMLCEEPPANGCNFAVGEVIHIAYLGDLSVYHV
                     RLKSGQMISAQLQNAHRHRKGLPTWGDEVRLCWEVDSCVVLTV"
     gene            2446..3399
                     /gene="potH"
                     /locus_tag="JN125_001693"
     CDS             2446..3399
                     /gene="potH"
                     /locus_tag="JN125_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine ABC transporter permease PotH"
                     /protein_id="HAY8871507.1"
                     /translation="MNTLEPAAQSKPPGGFKLWLSQLQMKHGRKLVIALPYIWLILLF
                     LLPFLIVFKISLAEMARAIPPYTELMEWADGQLSITLNLGNFLQLTDDPLYFDAYLQS
                     LQVAAISTFCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKN
                     NGVLNNFLLWLGVIDQPLTILHTNLAVYIGIVYAYVPFMVLPIYTALIRIDYSLVEAA
                     LDLGARPLKTFFTVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPDSIMIGRVLWQ
                     EFFNNRDWPVAAAVAIIMLLLLIVPIMWFHKHQQKSVGEHG"
     gene            3396..4241
                     /gene="potI"
                     /locus_tag="JN125_001694"
     CDS             3396..4241
                     /gene="potI"
                     /locus_tag="JN125_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine ABC transporter permease PotI"
                     /protein_id="HAY8871508.1"
                     /translation="MNNLPVVRSPWRIVILLLGFTFLYAPMLMLVIYSFNSSKLVTVW
                     AGWSTRWYGELLRDDAMMSAVGLSLTIAACAATAAAILGTIAAVVLVRFGRFRGSNGF
                     AFMITAPLVMPDVITGLSLLLLFVALAHAIGWPADRGMLTIWLAHVTFCTAYVAVVIS
                     SRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFV
                     SGPGATTLPMLVFSSVRMGVNPEINALATLILGAVGIVGFIAWYLMARAEKQRIRDIQ
                     RARHG"
     gene            4301..4789
                     /locus_tag="JN125_001695"
     CDS             4301..4789
                     /locus_tag="JN125_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjO family protein"
                     /protein_id="HAY8871509.1"
                     /translation="MEDETLGFFKKTSSSHARLNVPALVQVAALAIIMIRGLDVLMIF
                     NTLGVRGIGEFIHRSVQTWSLTLVFLSSLVLVFIEIWCAFSLVKGRRWARWLYLLTQI
                     TAASYLWAASLGYGYPELFSIPGESKREIFHSLMLQKLPDMLILMLLFVPSTSRRFFQ
                     LQ"
     gene            4830..5957
                     /gene="rlmC"
                     /locus_tag="JN125_001696"
     CDS             4830..5957
                     /gene="rlmC"
                     /locus_tag="JN125_001696"
                     /EC_number="2.1.1.189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(747)-C(5))-methyltransferase
                     RlmC"
                     /protein_id="HAY8871510.1"
                     /translation="MQCALYDAGRCRSCQWITQLIPEQLSAKTADLKNLLADFPVEEW
                     CAPVSGPEQGFRNKAKMVVSGSVEKPLLGMLHRDGTPEDLCDCPLYPASFAPVFAALK
                     PFIACAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSETKLAQLRKALPWLQE
                     QLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVA
                     SQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAA
                     ELGLTRLQFQALDSTQFATAQGEVQELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSC
                     NAQTMAKDIRELPGFRIERVQLFDMFPHTAHYEVLTLLVKQ"
     gene            complement(6132..6863)
                     /gene="artJ"
                     /locus_tag="JN125_001697"
     CDS             complement(6132..6863)
                     /gene="artJ"
                     /locus_tag="JN125_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY8871511.1"
                     /translation="MKKLVLAALLASFTFGASAAEKINFGVSATYPPFESIGANNEIV
                     GFDIDLAKALCKQMQAECTFTNHAFDSLIPSLKFRKYDAVISGMDITPERSKQVSFTT
                     PYYENSAVVIAKKDTYKAFADLKGKRIGMENGTTHQKYIQDQHPEVKTVSYDSYQNAF
                     IDLKNGRIDGVFGDTAVVNEWLKTNPQLGVATEKVTDPQYFGTGLGIAVRPDNKALLE
                     KLNNALAAIKADGTYQKINDQWFPQ"
     gene            complement(7154..7822)
                     /gene="artM"
                     /locus_tag="JN125_001698"
     CDS             complement(7154..7822)
                     /gene="artM"
                     /locus_tag="JN125_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtM"
                     /protein_id="HAY8871512.1"
                     /translation="MFEYLPELMKGLHTSLTLTVASLIVALILALIFTIILTLKTPVL
                     VWLVRGYITLFTGTPLLVQIFLIYYGPGQFPTLQEYPALWHLLSEPWLCALIALSLNS
                     AAYTTQLFYGAIRAIPEGQWQSCSALGMSKKDTLAILLPYAFKRSLSSYSNEVVLVFK
                     STSLAYTITLMEVMGYSQLLYGRTYDVMVFGAAGIIYLVVNGLLTLMMRLIERKALAF
                     ERRN"
     gene            complement(7822..8538)
                     /gene="artQ"
                     /locus_tag="JN125_001699"
     CDS             complement(7822..8538)
                     /gene="artQ"
                     /locus_tag="JN125_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter permease ArtQ"
                     /protein_id="HAY8871513.1"
                     /translation="MNEFFPLASAAGMTVGLAVCALIVGLALAMFFAVWESEKWRPVA
                     WAGSALVTILRGLPEILVVLFIYFGSSQLLLTLSDGFTINLGFVQIPVQMDIENFDVS
                     PFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRH
                     ALPGLGNQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFTWYIVAAAIYLVITLL
                     SQYILKRIDLRATRFERRPS"
     gene            complement(8545..9276)
                     /gene="artJ"
                     /locus_tag="JN125_001700"
     CDS             complement(8545..9276)
                     /gene="artJ"
                     /locus_tag="JN125_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY8871514.1"
                     /translation="MKKVLIAALIAGFSLSATAAETIRFATEASYPPFESIDANNQIV
                     GFDVDLAQALCKEIDATCTFSNQAFDSLIPSLKFRRVEAVMAGMDITPEREKQVLFTT
                     PYYDNSALFVGQQGKYTSVDQLKGKKVGVQNGTTHQKFIMDKHPEITTVPYDSYQNAK
                     LDLQNGRIDGVFGDTAVVTEWLKDNPKLAAVGDKVTDKDYFGTGLGIAVRQGNTELQQ
                     KLNTALEKVKKDGTYETIYNKWFQK"
     gene            complement(9294..10022)
                     /gene="artP"
                     /locus_tag="JN125_001701"
     CDS             complement(9294..10022)
                     /gene="artP"
                     /locus_tag="JN125_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine ABC transporter ATP-binding protein
                     ArtP"
                     /protein_id="HAY8871515.1"
                     /translation="MSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSL
                     LRVLNLLEMPRSGTLNIAGNHFDFTKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQQN
                     LIEAPCRVLGLSKDQALARAEKLLERLRLKPYSDRYPLHLSGGQQQRVAIARALMMEP
                     QVLLFDEPTAALDPEITAQIVSIIRELAETNITQVIVTHEVEVARKTASRVVYMENGH
                     IVEQGDASCFTEPQTEAFKNYLSH"
     gene            complement(10240..10755)
                     /locus_tag="JN125_001702"
     CDS             complement(10240..10755)
                     /locus_tag="JN125_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HAY8871516.1"
                     /translation="MRYSKLTMLIPCALLLSACTTVTPAYKDNGTRSGPCVEGGPGNV
                     AQQFYDYRILHRSNDITALRPYLSDKLATLLSDASRDNNHRELLTNDPFSSRTTLPES
                     ARVASASTIPNRDARNIPLRVDLKQGDQSWQDEVLMIQEGQCWVIDDVRYLGGSVHAT
                     AGTLRQSIENR"
     gene            10881..11204
                     /locus_tag="JN125_001703"
     CDS             10881..11204
                     /locus_tag="JN125_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal-binding domain-containing protein"
                     /protein_id="HAY8871517.1"
                     /translation="MQFSTTPTLEGQTIVEYCGVVTGEAILGANIFRDFFAGIRDIVG
                     GRSGAYEKELRKAREIAFEELGSQARALGADAVVGIDIDYETVGQNGSMLMVSVSGTA
                     VKTRR"
     gene            11201..12031
                     /locus_tag="JN125_001704"
     CDS             11201..12031
                     /locus_tag="JN125_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HAY8871518.1"
                     /translation="MRRVFWLVAAALLLAGCAGEKGIVEKEGYQLDTRRQAQAAYPRI
                     KVLVIHYTADDFDSSLATLTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWHAGI
                     SAWRGATRLNDTSIGIELENRGWQKSAGVKYFAPFEPAQIQALIPLAKDIIARYHIKP
                     ENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASL
                     LELLARYGYDVKPDMTPREQRRVIMAFQMHFRPTLYNGEADAETQAIAEALLEKYGQD
                     "
     gene            complement(12028..13041)
                     /locus_tag="JN125_001705"
     CDS             complement(12028..13041)
                     /locus_tag="JN125_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415389.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HAY8871519.1"
                     /translation="MKVLVTGATSGLGRNAVEFLCQKGISVRATGRNEAMGKLLEKMG
                     AEFVPADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAV
                     AWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAASEEVINMFSQANPQ
                     TRFTILRPQSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMTYYENAVHAMWLA
                     SQEACDKLPSGRVYNITNGEHRTLCSIVQKLIDELNIDCRIRSVPYPMLDMIARSMER
                     LGRKSAKEPPLTHYGVSKLNFDFTLDITRAQEELGYQPVITLDEGIEKTAAWLRDHGK
                     LPR"
     gene            complement(13140..14570)
                     /locus_tag="JN125_001706"
     CDS             complement(13140..14570)
                     /locus_tag="JN125_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415390.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAY8871520.1"
                     /translation="MPQRILVLGASGYIGQHLVRTLSQQGHQILAAARHVDRLAKLQL
                     ANVSCHKVDLSWPDNLPALLQDIDTVYFLVHSMGEGGDFIAQERQVALNVRDALREVP
                     VKQLIFLSSLQAPPHEQSDHLRARQATADILREANVPVTELRAGIIVGAGSAAFEVMR
                     DMVYNLPVLTPPRWVRSRTTPIALENLLHYLVALLDHPASEHRIFEAAGPEVLSYQQQ
                     FEHFMAVSGKRRWLIPIPLPTRWISVWFLNVITSVPPTTARALIQGLKHDLLADDTAL
                     RALIPQRLIAFDDAVRSTLKEEEKLVNSSDWGYDAQAFARWRPEYGYFAKQAGFTVKT
                     SASLAALWQVVNQIGGKERYFFGNILWQTRALMDRAIGHKLAKGRPEREYLQTGDAVD
                     SWKVIVVEPEKQLTLLFGMKAPGLGRLCFSLEDKGDYRTIDVRAFWHPHGMPGLFYWL
                     LMIPAHLFIFRGMAKQIARLAEQSTD"
     gene            complement(14581..15582)
                     /gene="ltaE"
                     /locus_tag="JN125_001707"
     CDS             complement(14581..15582)
                     /gene="ltaE"
                     /locus_tag="JN125_001707"
                     /EC_number="4.1.2.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low-specificity L-threonine aldolase"
                     /protein_id="HAY8871521.1"
                     /translation="MIDLRSDTVTRPSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAA
                     ELSGKEAAIFLPTGTQANLVALLSHCERGEEYIVGQAAHNYLFEAGGAAVLGSIQPHP
                     IDAAADGTLPLDKVAMKIKPDDIHFARTKLLSLENTHNGKVLPREYLKEAWEFTRERN
                     LALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRAI
                     RWRKMAGGGMRQSGILAAAGMYALKNNVARLQEDHDNAAWMAEQLREAGADVMRQDTN
                     MLFVRVGEENAAALGEYMKVRNVLINASPIVRLVTHLDVSREQLAEVAAHWRAFLAR"
     gene            complement(15619..17337)
                     /gene="poxB"
                     /locus_tag="JN125_001708"
     CDS             complement(15619..17337)
                     /gene="poxB"
                     /locus_tag="JN125_001708"
                     /EC_number="1.2.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001532507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone-dependent pyruvate dehydrogenase"
                     /protein_id="HAY8871522.1"
                     /translation="MKQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEW
                     MSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHI
                     PSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLP
                     GDVALKPAPEGATTHWYHAPQPVVTPEEEELRKLAQLLRYSSNIALMCGSGCAGAHKE
                     LVEFAGKIKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQF
                     PYRAFYPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLVEEKADRKFLDK
                     ALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAADDAIFTCDVGTPTVWAARYLK
                     MNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMK
                     LPVKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVD
                     EALQRAFSIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGNEVIELA
                     KTNWLR"
     gene            complement(17470..18438)
                     /gene="hcr"
                     /locus_tag="JN125_001709"
     CDS             complement(17470..18438)
                     /gene="hcr"
                     /locus_tag="JN125_001709"
                     /EC_number="1.6.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001522746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH oxidoreductase"
                     /protein_id="HAY8871523.1"
                     /translation="MTMPTNQCPWRMQVHHITQETPDVWTISLICHDYYPYRAGQYAL
                     VSVRNSAETLRAYTISSTPGVSEYITLTVRRIDDGVGSQWLTRDVKRGDYLWLSDAMG
                     EFTCDDKAEDKFLLLAAGCGVTPIMSMRRWLAKNRPQADVRVIYNVRTPQDVIFADEW
                     RNYPVTLVAENNVTEGFIAGRLTRELLAGVPDLASRTVMTCGPAPYMDWVEQEVKALG
                     VTRFFKEKFFTPVAEAATSGLKFTKLQPAREFYAPVGTTLLEALESNNVPVVAACRAG
                     VCGCCKTKVVSGEYTVSSTMTLTDAEIAEGYVLACSCHPQGDLVLA"
     gene            complement(18450..20102)
                     /gene="hcp"
                     /locus_tag="JN125_001710"
                     /gene_synonym="priS"
     CDS             complement(18450..20102)
                     /gene="hcp"
                     /locus_tag="JN125_001710"
                     /gene_synonym="priS"
                     /EC_number="1.7.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415394.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxylamine reductase"
                     /protein_id="HAY8871524.1"
                     /translation="MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQG
                     LSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQC
                     LAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLK
                     GAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSIL
                     DAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLP
                     AHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVSAYDDRIWTRS
                     IVGWPGVRHLDGDDFSAVITQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVS
                     REKLRHIFLLGGCDGARGERHYFTDFATIVPDDCLILTLACGKYRFNKLEFGDIEGLP
                     RLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVK
                     NIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA"
     gene            complement(20246..21145)
                     /gene="lysO"
                     /locus_tag="JN125_001711"
     CDS             complement(20246..21145)
                     /gene="lysO"
                     /locus_tag="JN125_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415395.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lysine exporter LysO"
                     /protein_id="HAY8871525.1"
                     /translation="MFSGLLIILVPLIVGYLIPLRQQAALKVINQLLSWMVYLILFFM
                     GISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHQQEKLPSRI
                     AMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQ
                     IVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFG
                     PVIGSAAFFNDLARELIAIMLIPGLIRRSCSTALGLCGATSMDFTLPVLQRTGGLDMV
                     PAAIVHGFILSLLVPILIAFFSA"
     gene            complement(21638..22333)
                     /gene="aqpZ"
                     /locus_tag="JN125_001712"
     CDS             complement(21638..22333)
                     /gene="aqpZ"
                     /locus_tag="JN125_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin Z"
                     /protein_id="HAY8871526.1"
                     /translation="MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFG
                     LTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI
                     ASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATAKFAPAG
                     FAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGII
                     GGLIYRTLLEKRD"
BASE COUNT         5380 a         5839 c         5970 g         5287 t
ORIGIN      
        1 acaccgcgcc gataaaaaat atgcacgttt attgcatatc ttttagtatg acaacttttg
       61 ttcgtttgtt aacgaacttt cagaaggaaa gagatatgac cgccttaaat aaaaaatggc
      121 tttcgggtct ggttgcgggt gctctgatgg ccgtctctgt cggcacgctc gcggctgaac
      181 aaaaaacact ccacatttat aactggtctg attatatcgc ccctgacacg gtggccaatt
      241 ttgaaaaaga aaccggtatt aaagtcgtct acgatgtttt cgactctaac gaagtactgg
      301 aaggcaaatt aatggcgggt agcaccggct ttgacttggt ggttccatct gccagctttc
      361 ttgaacgcca gttgactgcg ggagttttcc agccgctgga caaaagcaaa ttgccggagt
      421 ggaagaatct cgacccggag ctgctgaagc tggtcgccaa acacgatccc gacaataaat
      481 ttgctatgcc ctatatgtgg gcgacgaccg ggattggcta taacgttgat aaagttaaag
      541 ctgtgctggg cgaaaacgcg cccgtcgata gctgggactt gatcctcaaa cctgaaaatc
      601 tggaaaaact gaaaagctgc ggtgtctctt tcctggatgc gccagaagaa gtttttgcta
      661 ccgtgttgaa ttatctcggc aaagatccca acagcactaa agcggatgat tacaccggac
      721 cggcaaccga tctgctgtta aagctgcgcc cgaacattcg ttatttccat tcatctcaat
      781 acattaacga cctggcaaac ggcgatattt gcgtcgctat cggctgggca ggtgatgtct
      841 ggcaggcgtc aaaccgcgcg aaggaagcga agaatggagt gaatgtctcg ttctcgattc
      901 caaaagaagg ggcgatggcg ttctttgatg tattcgccat gcctgcggat gccaaaaaca
      961 aagacgaagc ctatcagttc ctgaattacc tgctgcgccc ggatgtagta gcgcatattt
     1021 ccgaccatgt gttctatgcc aacgccaata aagcagccac gccgctggtg agtgcggaag
     1081 tccgtgagaa cccgggtatt tatcctccgg cggacgttcg tgcgaagcta ttcactctga
     1141 aagtacagga tccgaaaatc gaccgtgtgc gcacccgcgc gtggaccaaa gtgaagagcg
     1201 gaaaataatc cgcagcctta gatgccgggc gggcgcacca cacccgccgg caattcgcac
     1261 catcatggtg cgcttgcaca cattcaatgc cggagagcag ccgtgaatga cgctatccct
     1321 cgcccgcagg cgaaaacccg taaggcgctg acgccgctat tagaaatccg caacctcacc
     1381 aaatcctacg atggtcagca tgcggtcgat gatgtcagcc tgaccatcta caaaggtgaa
     1441 atcttcgcgc tgctgggcgc ttccggctgt ggcaagtcca cgctgctgcg tatgctggca
     1501 ggttttgaac aaccttctgc cgggcagata atgctcgatg gcgtcgattt gtcacaggtg
     1561 ccgccttacc tgcgccccat caatatgatg tttcagtctt acgcgctgtt tccgcatatg
     1621 accgtggaac agaacatcgc ttttggcctg aaacaggaca aactaccgaa agcggaaatt
     1681 gccagtcggg tccatgagat gctcggcctg gtgcacatgc aggagttcgc caaacgcaaa
     1741 ccgcatcagc tttccggtgg tcagcgacag cgtgtggcgc tggcccgaag ccttgccaag
     1801 cgcccgaaac tattactgct cgacgagccg atgggcgcgc tggataaaaa gctgcgtgac
     1861 cggatgcagc ttgaagtggt ggatattctg gagcgtgtcg gcgtgacctg tgtgatggtc
     1921 actcacgatc aggaagaggc gatgacgatg gcgggacgta tcgccattat gaatcgcggg
     1981 aaatttgtcc agattggcga gccagaagag atctacgaac atccaaccac ccgctacagt
     2041 gctgaattta tcggttcggt taatgtcttt gaaggtgtac tcaaagagcg tcatgaggat
     2101 gggcttgtgc tttattcgcc tgggctggtg catccactga aagtcgacgc ggatgcctcg
     2161 gtggtcgata acgtgccggt acatgtggcg ctgcgcccgg aaaaaatcat gctttgcgaa
     2221 gagccgcccg ccaatggttg taacttcgcg gtgggggagg tgatacacat tgcctatctc
     2281 ggcgatcttt cggtgtatca cgttcgtctg aaaagtgggc agatgattag cgcccagcta
     2341 caaaacgccc atcgtcatcg taaagggtta ccgacctggg gcgacgaagt gcgtttgtgc
     2401 tgggaagtgg acagctgtgt ggtgctgacg gtttaaggag caaagatgaa tacacttgaa
     2461 cctgctgccc agtcgaaacc gccgggcgga tttaagctgt ggttgtcgca gctgcaaatg
     2521 aagcatgggc gcaaactggt cattgcgttg ccatatatct ggttgatctt gctgtttctg
     2581 ctgccatttc tgattgtctt taaaataagc ctggcggaga tggcgcgcgc tattccacct
     2641 tataccgaac tgatggagtg ggctgacggg caactgtcca tcactcttaa tctcggtaat
     2701 tttctgcaac tgaccgacga tccgctatat ttcgatgctt atctccagtc gctacaggtg
     2761 gctgcgattt cgacattttg ctgtttactg atcggctatc cgctggcgtg ggcggtggcg
     2821 cacagtaagc cttcgacccg taatatttta ttactactgg tgatcctgcc gtcgtggacc
     2881 tcgtttctga tccgcgttta tgcctggatg ggaatattaa aaaacaacgg tgtactgaat
     2941 aattttctgc tgtggctggg ggttatcgat caaccgctga ccattcttca taccaatctg
     3001 gcagtttata ttggcattgt ttacgcctac gtgccgttta tggtgctgcc gatttatacc
     3061 gcgttgattc gtattgatta ttcgctagtg gaagcagcgc tggatctcgg tgcacgaccg
     3121 ctgaaaacgt tctttactgt gatcgtgccg ctgactaaag gtgggattat tgccggatcg
     3181 atgctggtgt ttatcccggc tgtgggcgag tttgtgatcc cggaactgct cggtggcccg
     3241 gacagcatca tgatcgggcg cgtgctatgg caagagtttt tcaataaccg cgactggccg
     3301 gtggccgcgg cggtagcgat catcatgttg ctgctgctaa ttgtgccgat aatgtggttc
     3361 cacaaacacc agcaaaaaag cgtgggagaa cacggatgaa taatttaccg gtagttcgtt
     3421 cgccctggcg gattgtgatt ttgctgctgg gctttacctt tctctacgcg ccaatgctga
     3481 tgctggtcat ctattcgttt aacagctcga agctggtgac ggtgtgggcc ggctggtcaa
     3541 cgcgctggta tggtgagtta ttgcgcgatg acgcgatgat gagtgcggtt ggtttaagcc
     3601 tgacaattgc tgcctgtgcg gcaacggcgg cggcgatcct cgggactatt gcggcggtgg
     3661 tgctggtgcg ctttggcagg tttcgcggat caaatggctt tgcctttatg atcaccgcgc
     3721 cgctggtaat gccagatgtc atcacgggct tgtcgctgtt gttattattc gtcgcgcttg
     3781 ctcatgccat tggctggcct gcggaccgcg gtatgcttac catctggctg gcgcatgtca
     3841 ctttctgtac ggcttatgtg gcggtcgtta tttcgtcgcg tctgcgggaa ctggatcgct
     3901 cgatagaaga agcagcgatg gatctcggtg cgacgccgct gaaagtgttt ttcgtcatta
     3961 cgctaccgat gatcatgcct gcgatcattt ctggctggtt actggctttt actttgtcgc
     4021 ttgatgatct ggtgatcgcc agctttgttt ccgggccggg agccaccacg ttaccgatgc
     4081 tggtcttttc cagcgtgcgg atgggggtga atccggaaat caacgccctt gcaacgttaa
     4141 ttctcggtgc ggtcggaatt gtcggattta tcgcctggta tctgatggct cgcgcagaaa
     4201 aacagcggat acgcgatatc cagcgtgcaa gacatggctg aagacactaa aatttgccaa
     4261 cctggctaca taatgccgcg catgccgcgg cattgttttc atggaagacg aaacgttggg
     4321 attttttaag aaaacatctt catctcatgc tcgcctgaat gtgcctgcgc tggtgcaggt
     4381 agcggcgctc gccattatta tgatccgtgg cctcgacgtg ctgatgattt tcaatacgct
     4441 gggcgtgcgc ggtattggcg agttcattca tcgcagcgta caaacctgga gcttaacgct
     4501 ggtattttta agcagtctgg tgctggtttt tatcgagatc tggtgtgcgt tttcactggt
     4561 gaaagggcgt cgctgggcgc gctggctata tctgctgaca caaatcaccg ccgcaagtta
     4621 cttgtgggcg gcttcgctgg ggtatggtta tccggagctg ttcagcattc ccggtgaatc
     4681 aaaacgtgaa atcttccata gcctgatgct gcagaagctg ccggatatgc tcatcctgat
     4741 gctgctgttc gttccctcga ccagtcggcg gttcttccag ttgcaataat gtgtataatc
     4801 gtcgcccctg atgatgtgaa ggtcaatgta tgcagtgcgc actttacgac gcgggtcgct
     4861 gtcgttcctg tcagtggata acgcagctga ttccagagca actctccgct aaaaccgccg
     4921 atcttaaaaa tctgctcgcc gattttccgg ttgaggaatg gtgcgcgccg gtgtcaggcc
     4981 cggaacaagg gtttcgtaat aaagccaaaa tggtggtgag tggtagcgtt gaaaaaccac
     5041 tgctcggtat gctgcatcgc gatggcacgc cggaagacct ttgtgactgc ccgctttatc
     5101 ctgcctcttt tgcgcccgtt tttgcggcgc taaaaccgtt tatcgcctgt gcggggttaa
     5161 cgccctacaa cgtggcgcgt aagcgtggcg aactgaaata cattctgctg actgaaagcc
     5221 agagcgatgg cggcatgatg ctgcgctttg tactgcgttc tgaaaccaaa ctggcacaac
     5281 tgcgtaaggc gctgccgtgg ttacaggaac aactaccgca actgaaagtt attaccgtca
     5341 atattcagcc ggtacatatg gcgattatgg aaggggagac ggagatctac ctgactgaac
     5401 aacaggcgct ggcagagcgt tttaatgacg taccgctgtg gatccgtccg caaagtttct
     5461 tccagactaa tccggcggtc gccagccagc tgtacgctac cgcgcgcgac tgggtacggc
     5521 agctgccagt taaacatatg tgggatctgt tctgcggtgt ggggggcttt ggtttacact
     5581 gcgcgacgcc tgacatgcag ttaaccggga tcgaaattgc gccagaggcc attgcctgtg
     5641 caaagcagtc agccgctgaa ctgggcttaa ctcgtttaca atttcaggcg ctggactcca
     5701 ctcagtttgc cactgctcag ggggaggtgc aggagctggt gctggttaac ccgccgcgcc
     5761 gcggcattgg taaaccgctg tgtgattatc tctcaacgat ggcaccgcgt tttatcatct
     5821 actccagctg taacgcccaa actatggcga aagatatccg cgaactgcct gggtttcgca
     5881 tcgaacgggt acagcttttt gatatgttcc cgcacaccgc gcactatgaa gtgctgacgc
     5941 tgctggtgaa gcaataaaaa agccgcaggt gcggcttcag attgctgatc aggtgcgctt
     6001 tgttcatgcc ggatgcggcg tgtacgcctt atccggccta caaaatcatg ctaaatcaat
     6061 acattgcaga gttgatgtgg gccagataag cgcagcgcat caggcaatct tacttttgtc
     6121 atcagtctca attactgcgg gaaccactgg tcattgattt tctgatatgt accgtcagct
     6181 ttaattgctg ccagcgcgtt attcagtttt tccagcagag ctttgttatc cggacgtaca
     6241 gcgatgccca gaccggtgcc gaagtattgc ggatcggtca ctttttcagt agcaacgccc
     6301 agttgcggat tggttttcag ccattcgttt accaccgctg tgtcaccaaa taccccatca
     6361 atacgaccat ttttcagatc gataaaggca ttctgataac tgtcatagga gacagttttc
     6421 acttcggggt gctgatcctg aatatatttc tggtgcgtgg tgccgttttc catcccaata
     6481 cgtttgcctt tcagatcggc aaacgctttg taggtatctt ttttggcaat cacgacggct
     6541 gagttttcat agtagggcgt ggtaaacgat acctgcttgc tacgctcggg cgtgatatcc
     6601 ataccggaga ttacggcgtc atattttctg aatttcagtg acgggatcag gctgtcgaac
     6661 gcgtgattag taaaagtaca ttctgcctgc atttgtttgc acaaggcttt tgccagatcg
     6721 atatcaaagc cgacaatctc attattagca cctatagatt caaagggtgg ataggtggct
     6781 gaaacgccaa aattgatttt ctctgcggca gaagcaccga aagtaaagga agcaagtaaa
     6841 gcggcaagaa ctaacttttt catgatggaa ctcccgtctg tcaatcttat gatttttggc
     6901 cgtgtctgcg gcatgggata ataatgccat caagtgaatt tatatgcaat aaatatgatt
     6961 aaataattta aatgaaataa aaaaagacgg ataacttagt gagttgtccg tcttcattat
     7021 aagaatttat gcactatgta ggccggataa ggcgtccacg ccgcatccgg cacaggcacc
     7081 gtgctgatgt ctgatgcgac gctggcgcgt cttatcagac ctacaaaccc cccggcgaat
     7141 gtacgcagct acattaattc cgccgttcga atgccagtgc tttgcgctcg atcagacgca
     7201 tcatcagcgt cagcaggccg ttgacgacca ggtaaataat ccctgccgca ccgaacacca
     7261 ttacatcgta ggtgcgtccg tacaacaact ggctgtatcc catcacttcc atcagcgtaa
     7321 tggtgtaagc cagagaggta cttttgaaca ccagcaccac ttcgttggaa taagaagaga
     7381 gcgagcgttt aaaggcatac ggcagcagga tcgccagcgt atcttttttg ctcattccca
     7441 gggcgctaca ggactgccac tgaccttctg ggatcgcacg aattgcaccg taaaacagct
     7501 gcgtggtata cgccgcactg ttcagcgata acgcaatcag cgcacataac cacggttctg
     7561 acaacaaatg ccacagtgcc ggatactcct gcaaagtcgg aaactggccc ggcccgtaat
     7621 aaatcaggaa gatctgcacc agcagcggcg taccggtaaa cagcgtgata taaccccgca
     7681 ccagccacac cagcaccggc gttttcagcg tcaggatgat ggtaaaaatc aatgccagaa
     7741 tcagtgccac aatcagcgag gcaacggtta gcgtcaggct ggtgtgtagc cctttcatca
     7801 gttcgggtaa atactcaaac attagctggg cctccgctca aaacgtgtcg cgcgcaggtc
     7861 aatgcgtttg agaatgtact gactgagcag ggtgatcacc aggtaaatcg ccgccgccac
     7921 aatgtaccag gtaaatggtt cctgggtacg agtagcgatg ctttttgttt gcagcattaa
     7981 atcattcaca ctaatcaaac tgaccagcgc ggtatctttc agcagcacca gccactggtt
     8041 accgaggcca ggcagcgcat gacgccacat ctgcggcatc accagacgga aaaagatagc
     8101 cgatttcgac agccccagcg cctgaccaga ctcccactga cccaccggca ccgctttcaa
     8161 cgcgccccga agcgtttgcg aggcataggc ggcatacagc agtgacagag cgatgacacc
     8221 acaaaggaac gggctaacgt cgaagttctc aatgtccatc tgcactggga tctgcacgaa
     8281 cccaagattg atagtgaagc catccgaaag cgtcagcagc agctgcgagg agccaaaata
     8341 gataaacagc accaccagaa tttctggcag gccacgcaga atggttacca gcgctgaacc
     8401 tgcccacgcg acaggacgcc atttttccga ctcccatacc gcaaagaaca tcgccagcgc
     8461 cagcccgaca atcaatgcac aaacggcaag gccgacggtc atcccggcgg cgcttgctaa
     8521 aggaaaaaat tcattcatca ggaattactt ctggaaccat ttgttgtaga tggtttcgta
     8581 agtgccatct ttcttcactt tttccagcgc agtgttgagt ttctgctgca gctcagtgtt
     8641 gccctgacgt accgcgatgc cgaggccagt gccgaagtaa tctttatcgg tcactttgtc
     8701 gcccaccgcc gccagtttcg ggttatcttt cagccactca gtgaccactg cggtgtcacc
     8761 gaagacgccg tcgatacgcc cgttttgcag atccagtttt gcgttctggt agctgtcata
     8821 cggaacggta gtgatttccg ggtgcttatc cataatgaat ttctggtgtg tcgtcccgtt
     8881 ctgtacgccg acttttttgc ctttcagctg atcaacactg gtgtatttgc cttgctgacc
     8941 cacaaacagg gcagagttgt catagtacgg ggtggtaaac agcacctgct tttcacgctc
     9001 cggagtgata tccatgcccg ccatcacggc ttctacgcga cggaatttca ggcttgggat
     9061 caggctgtca aacgcctggt tagagaaagt gcaggttgca tcaatctctt tacacagcgc
     9121 ttgtgccagg tcgacgtcaa aaccaacgat ctggttgttt gcatcaatcg attcaaacgg
     9181 aggataggat gcttcggtag caaaacgaat ggtttcggca gctgtggcgg aaagactaaa
     9241 acctgcaatt aacgcggcaa tcagaacttt tttcattgtt gttatcccga atcttagtga
     9301 gagagatagt ttttaaatgc ttcggtttgc ggctcggtaa agcagctcgc gtcgccttgt
     9361 tctacgatat gaccattttc catatacacc actcggctgg cggttttacg cgccacttca
     9421 acttcgtggg tgacgatcac ctgggtaata ttcgtttctg ccagctcacg aatgatgctg
     9481 acgatttgtg ccgtaatttc cgggtccagt gcggcggtcg gttcatcgaa cagcagtacc
     9541 tgcggttcca tcatcaacgc acgggcaata gcaacacgct gctgctgacc accagaaaga
     9601 tgcagcgggt aacgatcgct ataaggtttg agacgcagac gttccagcag tttttctgca
     9661 cgggccagcg cctgatcttt actcaacccc agtacacggc agggcgcttc aatcaggttt
     9721 tgctgcacgg tcagatgcgg ccacaggttg tattgctgaa acaccatgcc aacgttacga
     9781 cgcaaatcgc gaatcgcttt gtcagagggt gttttggtga aatcgaaatg gttgcctgca
     9841 atgttgagcg taccggagcg cggcatctca agcagattga gtacacgcag cagcgagctt
     9901 ttacccgcgc cgctggggcc aagtaacacc agcgtttcgc cctgtgggca atccagcgtg
     9961 atatcgaaca gcgcctgatg cgcgccgtag aagcaattaa tgccgtttaa ttgaatactc
    10021 attgacactc gtatactggc agtctgatag ctattgaggt cgaagatagt acctttgaca
    10081 gaataattat gcaatatttc tgctttaaaa gttaaaagca aagcgcatta ttcaataaac
    10141 atagcacaaa ataacggggg cggtggtcgg cgagcataaa tgtcggcatt cctcacgaaa
    10201 tgccggacaa tttacggggt ttattggttg atcaaggtgt tagcgattct cgatggactg
    10261 acggagcgta cccgccgtgg catgaacgct gccgcctaag tagcgtacat cgtcgatcac
    10321 ccaacactgg ccttcctgaa tcattaacac ttcatcctgc cagctctgat caccctgttt
    10381 tagatccaca cgcagaggaa tatttcgcgc atcacgattc gggattgttg aggcactggc
    10441 aacacgggcg ctctctggca aggttgtgcg actggagaat ggatcgttgg tcagtagttc
    10501 ccgatggtta ttatcccggg aggcatcgct aagcagtgtc gccagtttgt cgctcagata
    10561 agggcgcaag gcggtgatgt cgttgctgcg gtgcaaaatg cggtagtcat aaaattgctg
    10621 ggccacgtta cccgggcctc cttcaacgca aggaccactg cgtgtgccgt tatctttata
    10681 agctggagtg actgtggtgc aggcactgag gagcagtgcg caggggataa gcattgtcaa
    10741 tttgctgtag cgcataatga tttccttata agcgatcgct ctgaaagcgt tctacgataa
    10801 taatgatatc ctttcaataa tagcgtatca gtctgataat gcttttgaga tcgaaggctt
    10861 agcaaacaag gagatcgatc atgcaatttt ctacaacccc aactctggaa ggccagacca
    10921 tcgttgaata ttgcggtgtg gtgaccggcg aagcgatttt aggtgccaat attttccgtg
    10981 atttctttgc cggtatccgc gatatcgttg gcggacgttc cggtgcgtat gaaaaagaac
    11041 tgcgtaaagc acgggagatc gcctttgagg aattaggctc ccaggcgcgg gcgctggggg
    11101 ccgatgccgt cgtcggtatt gatatcgact acgaaacggt cgggcaaaac ggcagtatgc
    11161 tgatggttag cgtcagcggt acggcggtga aaacgcgtcg atgagaagag tcttctggct
    11221 ggtcgctgcc gctctgttat tggcagggtg tgcaggcgaa aaaggcattg tcgagaaaga
    11281 gggatatcag cttgataccc gacgccaggc gcaggcggcg tatccgcgca ttaaagtgct
    11341 ggtgatccac tacaccgcag atgattttga tagctcgctg gcgacactga ccgataagca
    11401 ggtcagctcg cattatctgg tccctgcggt accaccgcga tacaacggta aaccgcgcat
    11461 ctggcaactg gtgccggaac aagaactggc ctggcatgcg gggattagcg cctggcgcgg
    11521 ggcaacgcgc cttaacgaca cctctattgg cattgagctg gaaaaccgtg gctggcaaaa
    11581 atcggccgga gtgaaatatt ttgccccgtt tgaaccggca cagattcagg cgcttattcc
    11641 actggcgaaa gatattattg cccgttatca catcaagccg gaaaacgtag tggcacatgc
    11701 ggatatcgca ccgcagcgca aagacgatcc ggggccatta tttccctggc agcaactggc
    11761 gcagcagggg attggtgcct ggccggatgc gcagcgggtt aacttttacc ttgccgggcg
    11821 cgcgccgcac acaccggtag ataccgcgtc attgctggag cttttggcgc gctacggtta
    11881 tgacgttaaa cctgatatga caccgcgcga gcagcggcgc gtgattatgg cattccagat
    11941 gcatttccgc ccgacgttat ataacggcga agcggatgca gaaactcagg cgattgccga
    12001 agcattgctg gagaaatacg ggcaggatta gcgcggcagt tttccgtggt cgcgtagcca
    12061 ggcggcagtt ttctcgatac cttcatccag ggtgatgacc ggctgataac ctaactcttc
    12121 ctgcgcacgc gtaatatcca gcgtaaagtc aaaattcaac ttggagacgc cgtagtgggt
    12181 cagcggcggc tcttttgctg acttgcggcc taaacgctcc atgctgcggg cgatcatatc
    12241 cagcatcggg taggggacgg aacgaatacg acagtcaata ttcaactcgt cgatcagctt
    12301 ctgcacgatg ctgcacagtg tgcgatgctc gccgttggtg atgttgtaca cacgcccgga
    12361 aggtagctta tcgcaggctt cctggcttgc cagccacatt gcgtgcacgg cattttcata
    12421 gtaggtcata tcgaccagcg cactgccgcc atgcggtaac agaatactgc cgtagtggtg
    12481 catcatatgc gccagacggg gaataaagac tttatcgtgc ggtccgaaca gactttgtgg
    12541 gcgcagaata gtaaagcgcg tttgtggatt cgcctgcgaa aacatattga tcacttcttc
    12601 gctggctgct ttgctgcggg caaactcgtt ggcgaagcgg tgagggcgaa aatcttcttt
    12661 aatatcgcga tggtggtgat aatcgaagta cagggagggg gaagagatat gaataaagtt
    12721 acgcacaccc caggcgacag cccattcacc caggcggcga gtggcgcgaa cgttagccag
    12781 atcgaaagcc tgttgtgtcc cccagggtga ggtaaagctg gagcagtgcc acagcgtatc
    12841 aatgcccgcg agcatcactt tagcttgtga tgaaaccagc tcggtcagat ccgccggaac
    12901 aaactctgcg cccatttttt ccagcaattt gcccattgcc tcgttgcgac cggtcgctcg
    12961 cacgctgatg cctttctggc ataaaaactc taccgcgttt cgacctaagc cgctggtggc
    13021 gccggtaacc agtaccttca tatcaatcca ctgttgttga gaaaataacg tgcgcattct
    13081 tccgtgattt cccccatgat gcaatgggaa acatgaaaga ataacgcagg ttttgtcgat
    13141 taatctgtgc tttgttctgc cagtctggcg atttgttttg ccattccgcg aaaaataaac
    13201 agatgcgcgg ggatcatcaa taaccagtaa aacagccccg gcataccgtg cggatgccag
    13261 aaagcgcgga catcgatagt acgatagtcg cctttatctt ccaggctaaa acacagtcgt
    13321 cccagccccg gcgctttcat gccaaataac aacgtaagtt gtttttccgg ttcaacgaca
    13381 atcactttcc agctatctac cgcatcgcca gtctgtaaat attcgcgctc cgggcggcct
    13441 ttcgccagct tatgaccgat cgcgcggtcc atcaacgccc gtgtctgcca caaaatattg
    13501 ccaaagaaat aacgctcttt accgccgatt tggttcacta cctgccataa agcagcaagg
    13561 ctggcggacg ttttaacggt aaaccccgcc tgtttggcaa aataaccgta ctccggtcgc
    13621 cagcgggcaa aggcctgagc gtcgtagccc cagtcgctgg agttgaccag tttttcctcc
    13681 tctttcaacg tgctacgtac cgcgtcatcg aaagcgatca gccgttgtgg gatgagtgca
    13741 cgtagcgcgg tatcatccgc cagcagatcg tgtttcagcc cctgaatcaa cgccctggcg
    13801 gtggtgggcg gtacggaagt aatcacattg agaaaccaca ccgaaatcca gcgggtgggg
    13861 agggggatgg ggatcaacca gcggcgctta ccgctcaccg ccataaaatg ttcaaactgt
    13921 tgctgataac tgagcacctc tggtccggcg gcttcgaaga tgcggtgttc gctggccgga
    13981 tgatctaaca acgccaccag atagtgcagc aagttttcca gcgcgatggg cgtggtgcgt
    14041 gaacgtaccc agcgtggcgg cgttaacact ggcaggttgt agaccatatc gcgcatgact
    14101 tcgaacgccg ctgaacctgc gccaacgata attccggccc gaagttcggt cacaggtaca
    14161 ttcgcttcac gaagaatgtc cgccgtagcc tgacgagcac gcagatgatc cgactgctca
    14221 tgtggcgggg cctgcaacga actgagaaag attaattgct taactggtac ttcacgtagc
    14281 gcatcgcgga cgttgagagc cacctggcgc tcctgagcga taaaatcgcc gccttcgccc
    14341 atgctgtgca ccagaaaata gacggtatcg atatcctgca acagggccgg aaggttatcc
    14401 ggccagctga gatcgacttt atggcaactg acgtttgcca gttgcagctt tgcaagcctg
    14461 tcgacatgac gtgccgccgc caggatctga tgcccttgct ggctgagtgt gcgcaccaga
    14521 tgctgaccaa tgtagccact ggcaccgaga actaaaatgc gttgcggcac gtctctctcc
    14581 ttaacgcgcc aggaatgcgc gccagtgggc ggcgacttcc gccagttgtt cgcgcgagac
    14641 gtcaagatgc gtcaccaggc ggacaatcgg cgaggcgtta atcagcacgt ttctcacttt
    14701 catgtattcg cctaacgcgg cagcattttc ttccccgacg cgaacaaaca gcatattagt
    14761 gtcctgacgc atcacatccg cgcctgcttc acgcagttgc tccgccatcc aggcggcgtt
    14821 gtcgtgatct tcctgcaacc gtgcgacgtt atttttcagg gcatacatcc cggcggcagc
    14881 cagaatcccg gactgacgca tcccgccacc ggccattttc cgccagcgga tggcacgttt
    14941 aatgtaatca cgattaccga cgagtaatga accgactggc gtcccaagac ctttcgacag
    15001 gcaaatggtg aacgaatcac aatattgcgt gatctctttc agttcgcagc cgtaagccac
    15061 cacggcatta aagatgcgcg caccgtcaac atgcagcgcc agattgcgct cgcgggtaaa
    15121 ttcccatgct tctttcaggt attcacgcgg cagcactttg ccgttgtggg tgttttccag
    15181 actgagtaat ttggtgcggg cgaaatggat atcgtcgggt ttgattttca tcgccacttt
    15241 atccagcggt agcgtgccgt cggcagccgc gtcgatgggg tgcggctgaa tactgcccag
    15301 caccgctgcg ccaccggctt caaacagata gttatgcgcg gcctgaccga caatatactc
    15361 ttcgccacgt tcgcagtgac tgagcagagc gaccaggttg gcctgagtgc cggtaggcag
    15421 aaaaatggcg gcttctttac cggaaagctc tgctgcatag tcctgcagag cattaacggt
    15481 agggtcgtct ccgtaaacgt cgtccccaac cggggcggcc atcatcgctt cgagcatggc
    15541 gcggctcggt cgggtaacgg tatcactgcg taaatcaatc atggcatgtc cttattatga
    15601 cgggaaatgc cacccttttt accttagcca gttcgttttc gccagttcga tcacttcatt
    15661 gccgcgtccg ctgatgattg cgcgcaacat atacaagcta aatcctttgg cctgttcgag
    15721 tttgatctgc ggtggaatgg ctaactcttc tttggcgacc accacatcca ccagcaccgg
    15781 accgtcgatg gagaaggcgc gttgcagggc ttcatcaact tcagacgctt tttctacacg
    15841 gatacccgta atgccgcacg cttcggcaat gcgggcaaag tttgtgtcgt gtagttcggt
    15901 gccgtcagtc aaatagccac cagctttcat ctccatcgcc acaaagccca gcacgctgtt
    15961 gttaaagacg acaattttca ctggcagttt catctgcact actgagagga aatcgcccat
    16021 caacatgcta aaaccgccat cgccgcacat ggcgaccacc tgacgttctg gctctgtcgc
    16081 ctgcgcaccc agcgcctgcg gcatggcgtt agccatcgaa ccgtggttaa acgaacctaa
    16141 caggcgacgc ttgccgttca tttttagata acgtgccgcc cacaccgttg gcgtaccaac
    16201 gtcacaggtg aaaatagcgt catcggcggc aaaatgacta atttgctgcg ccagatattg
    16261 cgggtgaatg gctttctcgc tcggtttagc taaatcgtcc agccctttgc gggcgtcgcg
    16321 gtaatcttcc agcgctttat ccagaaactt gcgatcggct ttttcttcca ccaatggaag
    16381 caatgcacgc agagtcgact tgatatcgcc gaccagtgcc atatccacct tgctgtgagc
    16441 gccgatgctg gctgggttga tatcaatctg aatgattttg gcatcggtcg ggtagaaggc
    16501 gcggtaggga aattgcgtgc cgagtagcac taacgtgtcg gcgttcatca tggtatggaa
    16561 acctgacgag aagccgatta acccggtcat tccaacatca tacggattat cgtattcgac
    16621 atgttcttta ccgcgcaggg catgaacaat aggcgcttta attttcccgg caaactcaac
    16681 taactcttta tgcgcccccg cgcagccgct gccacacatc agggcgatat tgctggaata
    16741 acgcagcagt tgcgccagtt tgcgtaactc ttcttcttcc ggcgtcacga ctggttgtgg
    16801 cgcatgatac cagtgcgtgg ttgccccttc tggcgcaggt tttaacgcca cgtcgcctgg
    16861 taacacgaca accgaaacgc cacggttaag caccgctttg cgcatggcaa tcgccagtac
    16921 ttgtgggatc tgctccgggc tggaaaccag ctcgcaatag tgactacatt cgcggaatag
    16981 ctcttgtggg tgggtttcct ggaaatagcc gctgccaatt tcgctggagg gaatatgagc
    17041 ggcaatcgcc agtaccggaa cgtgattgcg gtggcaatca aacaggccgt tgattaagtg
    17101 caggttgccg gggccgcacg atccggcgca gaccgccagt tctccgctaa gttgtgcttc
    17161 agcgccagcg gcaaaggccg ccacttcttc gtggcgggtg gacatccact cgatggtgcc
    17221 catgcgatta agactgtcac taagaccatt cagagagtcg cctgtgactc cccagatgcg
    17281 tttcacccct gccgattcga gtgttttggc gatataagct gcaaccgttt gtttcatggt
    17341 tctccatctc ctgaatgtga taacggtaac aagtttagtt catctgacgg agggggaagg
    17401 gatgggagag aaaggaggca ctaacggtta aatagcccga tgaaaggaat atcatcgggc
    17461 ataaggcgat tatgcgagaa ccaaatcccc ctgcggatgg caggagcagg ccagtacgta
    17521 accttcagcg atttcggcgt cggtcagcgt cattgtactg ctcaccgtat attcaccgga
    17581 aaccactttt gtcttacagc agccgcaaac acccgcacgg caggcagcga caaccggaac
    17641 gttattgctt tccagcgcct ccagtagcgt ggtgccaacc ggggcgtaaa attctcgtgc
    17701 cggttgcagt ttggtgaatt tcagaccgct ggtcgccgct tctgctactg gggtgaagaa
    17761 tttctcttta aagaaacgcg tcacgccgag cgctttcact tcctgctcta cccaatccat
    17821 atacggagcc gggccgcagg tcatcacggt acgtgaagct aagtcaggta cacctgccag
    17881 cagttcgcga gtgagacgac cagcgataaa gccttcggta acgttatttt ctgccaccag
    17941 cgttaccgga tagttacgcc actcatcggc gaaaataaca tcctgcggcg tacgcacgtt
    18001 gtagatcacc cgcacatcgg cctgtggacg gttcttcgca agccagcgac gcatcgacat
    18061 aatcggcgtg acgccgcagc ctgccgccag caacaggaat ttatcttctg ctttatcgtc
    18121 gcaggtaaat tcccccatcg cgtccgaaag ccagagataa tcaccgcgtt ttacatcgcg
    18181 cgtcagccac tgggagccga caccgtcatc aatccgccgc acggtcaggg tgatatattc
    18241 actcacgcct ggcgtggagg aaatggtgta agcacgcagc gtttccgctg agtttcgcac
    18301 gctgaccagt gcatattgcc cggcgcgata tgggtagtaa tcgtggcaaa tcagggaaat
    18361 cgtccacaca tccggcgttt cttgcgtaat gtgatgaacc tgcatccgcc acgggcattg
    18421 attcgttggc atcgtcatcg acaaactcct tacgcgctca acagttgctt catgtcttct
    18481 tcaacagtgg tgatagaacg caggccgaat ttctcgttca gcaccgccag caggtctggt
    18541 gtcaggaaac caggtgcagt cgggccggtg acgatatttt tcacgcccag agaaagcagc
    18601 gtcagcagaa tgacgatcgc tttctgttca aaccaggaga gcaccagcga cagcggcaga
    18661 tcgttcacac cacagcccag tttctctgcc agagtgacag ccagaataat cgctgagtaa
    18721 gcatcgttac attgacctgc atctaccaga cggggcagac cttcgatatc gccaaactca
    18781 agtttgttaa agcgatattt accacaggcg agggtcagga tcaggcagtc atccggcacg
    18841 atggtggcga aatcggtgaa gtagtggcgc tcgccgcgtg cgccgtcaca gccaccaagc
    18901 aggaagatat gacgcagttt ttcacggctc accagatcaa tcagcgtatc agcagcgcca
    18961 agcagcgtct ggcgaccaaa acccacggtg ataaggtgcg gaatttcgct gtacgggaag
    19021 cctgccatct gttgcgcttg ggtgataacc gcagagaaat catcaccgtc cagatgacgc
    19081 acgccaggcc agccaacaat gctgcgggtc cagatacgat cgtcataagc gcttacggtt
    19141 gggtcgatga tgcagttcga ggtcatcacg atggggccag ggaaacgagc gaactccact
    19201 tgctgattct gccagccgct gccgtagtta ccgaccagat gcttgaattt acgcagctcc
    19261 gggtagccat gcgcaggcag catttcgccg tgggtgtaga cattaacgcc cgtgccttcg
    19321 gtctgttcca gcaggttgta gagatctttg agatcgtgac cggaaatcag aatgcattta
    19381 cccgccgtcg ctttgacgtt gacctgggtt ggcgtcgggt gaccgtattt accggtttcg
    19441 cctgcatcca gaatgctcat cactttgaag ttcatctggc cgatttccat tgaacactca
    19501 agaagcgcgt tcatatcggc aggccaggtc cccagccacg ccatgatttt atggtactgg
    19561 gcataaatat cgttgtcgta ttgaccgaga acatgcgcgt gttccatata ggccgccgca
    19621 cctttcaggc catacaggca cagcagacgc aggccgagaa tgttttcgcc aatcgccgct
    19681 ttatctttgt taggggtaaa ttctgctgcc tgacgttgca gctcgccgag atcatcgctc
    19741 accagttgca ggtcagccat cgggttatcg acgcgcgcgt tggcatctac agccaggcat
    19801 tgtgctttca gcgcctcgcg caaggcaatc gcttcacgag cgtagccgac aatacgcgga
    19861 gaatcgaagt taacgttggt cagggttgag aaaaaggcac gtggcgcgaa gctgtcaaca
    19921 tcgtggttga tgatgccgta ttcacgcgct tttaccgccc aggcagaaag cccttgcagc
    19981 gccgcgatga gtaaatcctg aaggtcagaa gtttccgccg ttttaccaca catcccctgc
    20041 gcgtatgagc agccgtttcc tgccggagta cggatagttt gttcacattg cacacaaaac
    20101 atgatcacac cttttaaagt tatatttaat atacatgttt aaggttaaga cgcttaacgc
    20161 ggggataaaa gggatttttc atgcaacttt aagggagatt gatttagcgc aattttggcg
    20221 gcagggatct accgccagag aggtattacg cagagaaaaa ggcgatgagg atcggcacta
    20281 acaggctaag aataaaaccg tgaacaattg ccgccgggac catatccagc ccgccagtac
    20341 gttgaagaac gggtagggtg aaatccattg atgtggcacc gcataagccc agtgcagtag
    20401 agcagctgcg gcgaatcagc ccagggatca acataatagc aatcagttca cgggccagat
    20461 cattaaaaaa cgccgcgctc ccgattaccg gaccaaaaga ttcggtcaat aaaataccgg
    20521 aaagagaata ccagccgaaa ccggaggcca ttgccagcgc ggtattgatg gggagatcaa
    20581 gaataaaggc gttaattaaa ccaccaatta atgaactgac aaccaccacc acggcgacaa
    20641 tcattccccg gcgattaagg acaatctgct ttaaggtcat gccattattg cgcaactgaa
    20701 taccaacgag gaaaagtagc aaaattaacg tgtattcact ggcttcggtc gcgtgttgta
    20761 agaaagccag tccactcaga ccaatggcaa aaccaatcac tactacgccg cacagtttta
    20821 gcgactccag cgccatcgca atacgcgacg ggagtttttc ttgctgatgg tggttgcgcc
    20881 acggcaggcc tcgctccagc cacatcaggg cggcaatatt acacagtaaa ataacggtaa
    20941 tactgacggc agaataatgc agaatcgcca acaggttact ggcgaggtta tcgagaaacg
    21001 ccagactgat acccataaaa aagagaataa ggtaaaccat ccagcttaat agctgattaa
    21061 taacttttaa cgcagcttgt tggcgaagcg gaatgaggta acccacaatc aggggaacca
    21121 gaatgattaa cagcccagaa aacatgaaaa cccagtcctt gcaaagatga agtcgaaatg
    21181 cgcgatgaca cactactgaa agcggaagga cgagtaaagt tgcaattaaa aggaaatgtt
    21241 atgcataagg gcagtagagt attcgttttc atttaaagat attcttgcgc tttaattaca
    21301 aactgcaccg atgttggtgg cgtcaaaatc gccgaggcgt tccctgaagg ccggggcagc
    21361 ccacatggat gtgggctgag ggcgcgtttt acagggatgt tacctcgcgc ccgacccggt
    21421 agccgtaagg gataagtcga gggcaccgcg cagcggcgat tttgttcgcc agagcccggg
    21481 ggggcagggg gcggcggcga ttggccgccc cctgcgcgct ccttgcgcca gtggcaatat
    21541 gtggcttagc tcatgaaagg agcgcaacaa gatgatgaat caacatataa caacatctta
    21601 aaaaaggcct gacattacgc caggccttct gcgttaatta atcacgcttt tccagcaggg
    21661 tccggtaaat cagaccaccg ataatgccgc cgacaattgg caccacccag aagaaccaca
    21721 gttgttctaa tgcccagccg ccctggaaga tagcaaccgc ggtgctgcgc gccgggttaa
    21781 cagaagtgtt agtcaccgga atactaatta agtgaatcag ggttaaggcc agaccaatag
    21841 cgatcggcgc aaaacctgct ggcgcgaatt tggcggttgc gccgtggatc accaacagga
    21901 aacctgcact caataccagt tcaactacca gcgcggaaag catggaataa ccgcctggtg
    21961 aatgctcgcc ataaccgtta gaagcaaaac cgctggctgc cgcgtcaaaa cccgttttac
    22021 cactggcaat taaatacagc agcgccgctg caacaatacc gccgacaacc tgggcaatta
    22081 cgtagccaac gacttctttt gccggaaaac gtccgccagc ccataaacca atagtgaccg
    22141 ccgggttaaa atgaccacca gaaatatgac caacagcaaa ggccatcgtc agaacggtca
    22201 gaccgaacgc caacgccacg ccggcaaaac caatgcctaa ttccgggaag cctgcggcca
    22261 gtacagcact accacagcca ccaaaaacaa gccagaaagt accaaaacat tcagctgcta
    22321 attttctgaa catatccacc tcaattaaaa attgaccctg tgaaaaatat ggtcgtttta
    22381 tagggtcgtc gtaaaaaaat gacgacggaa ataatgcgcg gctattttaa aaacgaaggc
    22441 gagtcattca ccagataaat aaatccagta aatttg
//
LOCUS       DADMHM010000051        22419 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.052, whole genome shotgun sequence.
ACCESSION   DADMHM010000051 DADMHM010000000
VERSION     DADMHM010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22419)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22419)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22419
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.052"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..301
                     /locus_tag="JN125_001713"
     CDS             <1..301
                     /locus_tag="JN125_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HAY8871527.1"
                     /translation="SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAE
                     LAKKGKGIIIISSEMPELLGITDRILVMSNGLVSGIVDTKTTTQNEILRLASLHL"
     gene            317..1327
                     /gene="mglC"
                     /locus_tag="JN125_001714"
     CDS             317..1327
                     /gene="mglC"
                     /locus_tag="JN125_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/methyl galactoside ABC transporter
                     permease MglC"
                     /protein_id="HAY8871528.1"
                     /translation="MSALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSN
                     ILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMDNANKVFPEMAT
                     MPIALVILIVCAIGAVIGLINGLIIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASP
                     ISGFDSGFSTFAQGFVALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPE
                     AAKVSGVNVGLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGG
                     VSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDSLKYAR
                     KK"
     gene            complement(1454..2689)
                     /gene="preA"
                     /locus_tag="JN125_001715"
     CDS             complement(1454..2689)
                     /gene="preA"
                     /locus_tag="JN125_001715"
                     /EC_number="1.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416652.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent dihydropyrimidine dehydrogenase
                     subunit PreA"
                     /protein_id="HAY8871529.1"
                     /translation="MLTKDLSITFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGV
                     VFKTIGFFTANEVSPRFDHLVKEDTGFIGFKNMEQIAEHPLEENLAALRRLKEDYPDK
                     VLIASIMGENEQQWEELARLVQEAGADMIECNFSCPQMTSHAMGSDVGQSPELVEKYC
                     RAVKRGSTLPMLAKMTPNIGDMCEVALAAKRGGADGIAAINTVKSITNIDLNQKIGMP
                     IVNGKSSISGYSGKAVKPIALRFIQQMRTHPELRDFPISGIGGIETWEDAAEFLLLGA
                     ATLQVTTGIMQYGYRIVEDMASGLSHYLADQGFDSLQEMVGLANNNIVPAEDLDRSYI
                     VYPRINLDKCVGCGRCYISCYDGGHQAMEWSEKTRTPHCNTEKCVGCLLCGHVCPVGC
                     IDLGEVKFKKGEKEHPVTL"
     gene            complement(2683..3919)
                     /locus_tag="JN125_001716"
                     /pseudo
     CDS             complement(2683..3919)
                     /locus_tag="JN125_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708046.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
     gene            complement(4113..4352)
                     /locus_tag="JN125_001717"
     CDS             complement(4113..4352)
                     /locus_tag="JN125_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2542 family protein"
                     /protein_id="HAY8871530.1"
                     /translation="MDVQQFFVVAVFFLIPIFCFREAWKGWRAGAIDKRVKNAPEPVY
                     VWRAKNPGLFFAYMVAYIGFGILSIGMIVYLIFYR"
     gene            complement(4355..5074)
                     /gene="sanA"
                     /locus_tag="JN125_001718"
     CDS             complement(4355..5074)
                     /gene="sanA"
                     /locus_tag="JN125_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane permeability protein SanA"
                     /protein_id="HAY8871531.1"
                     /translation="MLKRVFLSLLVLIGLLLLTVLGLDRWMSWKTAPYIYDELQDLPY
                     RQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNSGKVNYLLLSGDNALQSYNEPMTM
                     RKDLIAAGVAPSDIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQRFHCERALFIALHM
                     GIQAQCYAVPSPKDMLSVRIREFAARFGALADLYIFKREPRFLGPLVPIPAMHQVPED
                     AQGYPAVTPEQLLELQKKQGK"
     gene            complement(5224..6108)
                     /gene="cdd"
                     /locus_tag="JN125_001719"
     CDS             complement(5224..6108)
                     /gene="cdd"
                     /locus_tag="JN125_001719"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HAY8871532.1"
                     /translation="MHPRFQTAFAQLADNLQSALEPILADKYFPALLTGEQVSSLKSA
                     TGLDEDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVH
                     AEQSAISHAWLSGEKALAAITVNYTPCGHCRQFMNELNSGLDLRIHLPGREAHALRDY
                     LPDAFGPKDLEIKTLLMDEQDHGYALTGDALSQAAIAAANRSHMPYSKSPSGVALECK
                     DGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKADAPLIQWDAT
                     SATLKALGCHSIDRVLLA"
     gene            complement(6238..6933)
                     /locus_tag="JN125_001720"
     CDS             complement(6238..6933)
                     /locus_tag="JN125_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidB/LrgB family autolysis modulator"
                     /protein_id="HAY8871533.1"
                     /translation="MMANIWWSLPLTLIVFFAARKLAARYKFPLLNPLLVAMVVIIPF
                     LMLTGISYDSYFKGSEVLNDLLQPAVVALAYPLYEQLHQIRARWKSIITICFIGSVVA
                     MVTGTSVALLMGASPEIAASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAV
                     FGHTLLNAIRIRTKAARGLAMGTASHALGTARCAELDYQEGAFSSLALVLCGIITSLI
                     APFLFPIILAVMG"
     gene            complement(6930..7328)
                     /locus_tag="JN125_001721"
     CDS             complement(6930..7328)
                     /locus_tag="JN125_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CidA/LrgA family protein"
                     /protein_id="HAY8871534.1"
                     /translation="MSKTLNIIWQYLRAFVLIYACLYAGIFIASLLPVTIPGSIIGML
                     ILFVLLALQILPAKWVNPGCYVLIRYMALLFVPIGVGVMQYFDLLRAQFGPVVVSCAV
                     STLVVFLVVSWSSQLVHGERKVVGQKGSEE"
     gene            7588..8534
                     /gene="dusC"
                     /locus_tag="JN125_001722"
                     /pseudo
     CDS             7588..8534
                     /gene="dusC"
                     /locus_tag="JN125_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311053.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(16) synthase DusC"
     gene            complement(8922..9005)
                     /gene="yohP"
                     /locus_tag="JN125_001723"
     CDS             complement(8922..9005)
                     /gene="yohP"
                     /locus_tag="JN125_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020233574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YohP"
                     /protein_id="HAY8871535.1"
                     /translation="MKIILWAVLIIFLIGLLVVTGVFKMIF"
     gene            9139..10665
                     /gene="mdtQ"
                     /locus_tag="JN125_001724"
     CDS             9139..10665
                     /gene="mdtQ"
                     /locus_tag="JN125_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311052.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug resistance outer membrane protein
                     MdtQ"
                     /protein_id="HAY8871536.1"
                     /translation="MLLMYCHAKLKNISQHTVISAHRFLPDYSPMNRDSFYPAIACFP
                     LLLMLAGCAPMHETRQALSQQTPAAQVDTALPTALKNGWPDSQWWLEYHDNQLTSLIN
                     NALQNAPDMQVAEQRIQLAEAQAKAVATQDGPQIDFSADMERQKMSAEGLMGPFALND
                     PAAGTTGPWYTNGTFGLTAGWHLDIWGKNRAEVTARLGTVKARAAEREQTRQLLAGSV
                     ARLYWEWQTQAALNTVLQQIEKEQNTIIATDRQLYQNGITSSVDGVETDINASKTRQQ
                     LNDVAGKMKIIEARLSALTNHQTKSLKLKPVALPKVASQLPDELGYSLLARRADLQAA
                     HWYVESSLSTIDAAKAAFYPDINLMAFLQQDALHLSDLFRHSAQQMGVTAGLTLPIFD
                     SGRLNANLDIAKAESNLSITSYNKAVVEAVNDVARAASQVQTLAEKNQHQAQIERDAL
                     RVVGLAQARFNAGIIAGSRVSEARIPALRERANGLLLQGQWLDASIQLTGALGGGYKR
                     "
     gene            10718..11479
                     /locus_tag="JN125_001725"
     CDS             10718..11479
                     /locus_tag="JN125_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAY8871537.1"
                     /translation="MAQVAIITASDSGIGKECALLLAQQGFDIGITWHSDEEGAKDTA
                     REVVSHGVRAEIVQLDLGKLPEGAQALEKLIQRLGRIDVLVNNAGAMTKAPFLDMAFD
                     EWRKIFTVDVDGAFLCSQIAARQMVKQGQGGRIINITSVHEHTPLPDASAYTAAKHAL
                     GGLTKAMALELVRHKILVNAVAPGAIATPMNGMDDSDVKPDAEPSIPLRRFGATHEIA
                     SLVAWLCSEGANYTTGQSLIVDGGFMLANPQFNPE"
     gene            complement(11609..12187)
                     /locus_tag="JN125_001726"
     CDS             complement(11609..12187)
                     /locus_tag="JN125_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416640.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HAY8871538.1"
                     /translation="MDLNTLISQYGYAALVIGSLAEGETVTLLGGVAAHQGLLKFPLV
                     VLSVALGGMIGDQVLYLCGRRFGGKLLRRFSKHQDKIERAQKLIQRHPYLFVIGTRFM
                     YGFRVIGPTLIGASQLPPKIFLPLNILGAFAWALIFTTIGYAGGQVIAPWLHNLDQHL
                     KHWVWLILVVVLVVGVRWWLKRRGKKKPDHQA"
     gene            12357..12932
                     /locus_tag="JN125_001727"
                     /pseudo
     CDS             12357..12932
                     /locus_tag="JN125_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416639.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YIP1 family protein"
     gene            13106..14038
                     /gene="pbpG"
                     /locus_tag="JN125_001728"
     CDS             13106..14038
                     /gene="pbpG"
                     /locus_tag="JN125_001728"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311048.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine endopeptidase"
                     /protein_id="HAY8871539.1"
                     /translation="MPKFRVSLFSLALMLAVPLAPQAVAKTAAATTASQPEIASGSAM
                     IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPEMKGVY
                     SRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTR
                     FVEPTGLSVHNVSTARDLTKLLIASKQYPLIGQLSTTREDMAIFSNPTYTLPFRNTNH
                     LVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW
                     IETGKVMPVPAAALSYKKQKAAQMAAAGQTAQND"
     gene            complement(14076..15791)
                     /gene="dld"
                     /locus_tag="JN125_001729"
     CDS             complement(14076..15791)
                     /gene="dld"
                     /locus_tag="JN125_001729"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HAY8871540.1"
                     /translation="MSSMTTTDNKAFLNELARLVGHSHLLTDPAKTARYRKGFRSGQG
                     DALAVVFPGSLLELWRVLKACVTADKIILMQAANTGLTEGSTPNGNDYDRDIVIISTL
                     RLDKLHVLGKGEQVLAYPGTTLYSLEKALKPLGREPHSVIGSSCIGASVIGGICNNSG
                     GSLVQRGPAYTEMSLFARINEDGKLTLVNHLGIDLGETPEQILSKLDDDRIKDDDVRH
                     DGRHAHDYDYVHRVRDIEADTPARYNADPDRLFESSGCAGKLAVFAVRLDTFEAEKNQ
                     QVFYIGTNQPEVLTEIRRHILANFENLPVAGEYMHRDIYDIAEKYGKDTFLMIDKLGT
                     DKMPFFFNLKGRTDAMLEKVKFFRPHFTDRAMQKFGHLFPSHLPPRMKNWRDKYEHHL
                     LLKMAGDGVGEAKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSD
                     EVEDILALDIALRRNDTEWYEHLPPEIDSQLVHKLYYGHFMCYVFHQDYIVKKGVDVH
                     ALKEQMLELLQQRGAQYPAEHNVGHLYKAPETLQKFYRENDPTNSMNPGIGKTSKRKN
                     WQEVE"
     gene            15987..18284
                     /gene="bglX"
                     /locus_tag="JN125_001730"
     CDS             15987..18284
                     /gene="bglX"
                     /locus_tag="JN125_001730"
                     /EC_number="3.2.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-glucosidase BglX"
                     /protein_id="HAY8871541.1"
                     /translation="MKWLCSVGIAVSLALQPALADDLFGNHPLTPEARDAFVTELLKK
                     MTVDEKIGQLRLISVGPDNPKEAIREMIKDGQVGAIFNTVTRQDIRAMQDQVMELSRL
                     KIPLFFAYDVLHGQRTVFPISLGLASSFNLDAVKTVGRVSAYEAADDGLNMTWAPMVD
                     VSRDPRWGRASEGFGEDTYLTSTMGKTMVEAMQGKSPADRYSVMTSVKHFAAYGAVEG
                     GKEYNTVDMSPQRLFNDYMPPYKAGLDAGSGAVMVALNSLNGTPATSDSWLLKDVLRD
                     QWGFKGITVSDHGAIKELIKHGTAADPEDAVRVALKSGINMSMSDEYYSKYLPGLIKS
                     GKVTMAELDDAARHVLNVKYDMGLFNDPYSHLGPKESDPVDTNAESRLHRKEAREVAR
                     ESLVLLKNRLETLPLKKSATIAVVGPLADSKRDVMGSWSAAGVADQSVTVLTGIKNAV
                     GENGKVLYAKGANVTSDKGIIDFLNQYEEAVKVDPRSPQEMIDEAVQTAKQSDVVVAV
                     VGEAQGMAHEASSRTDITIPQSQRDLIAALKATGKPLVLVLMNGRPLALVKEDQQADA
                     ILETWFAGTEGGNAIADVLFGDYNPSGKLPMSFPRSVGQIPVYYSHLNTGRPYNADKP
                     NKYTSRYFDEANGALYPFGYGLSYTTFTVSDVKLSAPTMKRDGKVTASVQVMNTGKRE
                     GATVVQMYLQDVTASMSRPVKQLKGFEKITLKPGETQTVSFPIDIEALKFWNQQMKYD
                     AEPGKFNVFIGTDSARVKKGEFELL"
     gene            18536..19452
                     /gene="osmF"
                     /locus_tag="JN125_001731"
                     /pseudo
     CDS             18536..19452
                     /gene="osmF"
                     /locus_tag="JN125_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311045.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter
                     substrate-binding protein OsmF"
     gene            19459..20616
                     /gene="yehY"
                     /locus_tag="JN125_001732"
     CDS             19459..20616
                     /gene="yehY"
                     /locus_tag="JN125_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter permease YehY"
                     /protein_id="HAY8871542.1"
                     /translation="MTYLRINPVLALLLLLTAIAAALPFISYAPNRLVSGEGRHLWQL
                     WPQTIWMLVGVGCAWLTACFIPAKKGSIFALILAQFVFVLLVWGAGKAATQLAQNGSA
                     LARTSLGSGFWLAAALALLACSDAIRRISTHPLWRWLLHMQIAIIPLWLLYSGTLNDL
                     SLMKEYANRQDVFDDALAQHLTLLFGAVLPALVIGVPLGIWCYFSTARQGEIFSLLNV
                     IQTVPSVALFGLLIAPLAALVTAFPWLGKLGIAGTGMTPALIALVLYALLPLVRGVVV
                     GLNQIPRDVLESARAMGMSGAQRFLHVQLPLALPVFLRSLRVVMVQIVGMAVIAALIG
                     AGGFGALVFQGLLSSAIDLVLLGVIPVIVLAVLIDALFDLLIALLKVKRND"
     gene            20609..21535
                     /gene="yehX"
                     /locus_tag="JN125_001733"
     CDS             20609..21535
                     /gene="yehX"
                     /locus_tag="JN125_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter ATP binding
                     protein YehX"
                     /protein_id="HAY8871543.1"
                     /translation="MIEFSHVSKLFGAQKAVNDLNLNFQEGSFSVLIGTSGSGKSTTL
                     KMINRLVEHDSGEIRFAGEEIRSLPVLELRRRMGYAIQSIGLFPHWSVAQNIATVPQL
                     QKWSRARIDDRIDELMALLGLESNLRERYPHQLSGGQQQRVGVARALAADPQVLLMDE
                     PFGALDPVTRGALQQEMTRIHRLLGRTIVLVTHDIDEALRLAEHLVLMDHGEVVQQGN
                     PLTMLTRPANDFVRQFFGRSELGVRLLSLRSVADYVRREERAEGEALAEEMTLRDALS
                     LFVARGCEVLPVVNTQGQPSGTLHFQDLLEEA"
     gene            21540..22271
                     /gene="yehW"
                     /locus_tag="JN125_001734"
     CDS             21540..22271
                     /gene="yehW"
                     /locus_tag="JN125_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine ABC transporter permease YehW"
                     /protein_id="HAY8871544.1"
                     /translation="MKMLRDPLFWLIALFVALIFWLPYSQPLFAALFPQLPRPVYQQE
                     SFAALALAHFWLVGISSLFAVIIGTGAGIAVTRPWGAEFRPLVETIAAVGQTFPPVAV
                     LAIAVPVIGFGLQPAIIALILYGVLPVLQATLAGLGAIDASVTEVAKGMGMSRGQRLR
                     KVELPLAAPVILAGVRTSVIINIGTATIASTVGASTLGTPIIIGLSGFNTAYVIQGAL
                     LVALAAIIADRLFERLVQALSQHAK"
     gene            complement(22252..22359)
                     /locus_tag="JN125_001735"
     CDS             complement(22252..22359)
                     /locus_tag="JN125_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YohO"
                     /protein_id="HAY8871545.1"
                     /translation="MRIAKIGVIALFLFMALGGIGGVMLAGYTFILRAG"
BASE COUNT         5366 a         5691 c         6010 g         5352 t
ORIGIN      
        1 ctccggtggt aatcagcaaa aggtgattat tggtcgctgg ctactaacgc aaccagaaat
       61 attaatgctc gatgaaccga cgcgcggtat tgatgtcggg gcgaagtttg aaatttatca
      121 gttaattgcc gaactggcga agaaaggcaa agggattatt attatctcct ctgaaatgcc
      181 tgagttgtta gggataacag accgtattct ggtcatgagc aacggtctcg tttccggaat
      241 tgtcgacaca aaaacaacaa cgcaaaacga aattctgcgt cttgcgtctt tgcaccttta
      301 agattagggg cttcccatga gtgcgttaaa taagaaaagt tttcttactt acctgaaaga
      361 gggcggtatt tacgtcgttc ttttagtttt gctggcgatt attattttcc aggacccaac
      421 atttttaagt ctgttgaact taagtaatat tctcacccag tcatcggtgc gtattattat
      481 cgcgctcggt gtggcagggt taattgtcac ccaggggacc gacctttctg cggggcgtca
      541 agtagggctg gcggcagtgg tggcagcgac attattgcag tccatggata acgccaacaa
      601 agtgttcccg gaaatggcga cgatgccgat tgcgctggtt attctgattg tctgtgccat
      661 tggtgcggtg atcggtttga tcaacggtct gattatcgct tatctcaacg tgacgccgtt
      721 cattaccacg ctcggcacga tgatcatcgt ctatggcatc aactcgctct attacgactt
      781 tgtcggggcg tcgccaattt ctggttttga cagtggcttc tctacctttg ctcagggctt
      841 tgtcgcgctg gggagtttcc gtctctctta catcaccttc tacgcgttga ttgcggtggc
      901 gttcgtctgg gtgttgtgga acaaaacccg cttcggtaag aacatttttg ccattggcgg
      961 taacccggaa gcggcaaaag tatctggtgt caacgtcggc ctgaacctgc tgatgatcta
     1021 cgcgttgtct ggtgtgttct atgccttcgg cgggatgtta gaagccggac gtatcggctc
     1081 tgccaccaac aacctcggct ttatgtatga actggatgct atcgcggcgt gcgtggtagg
     1141 cggtgtatcg ttcagcggcg gtgtggggac ggtgattggc gtggtgaccg gggtaattat
     1201 ttttaccgtc atcaactatg gcctgacgta tatcggcgta aacccatact ggcagtacat
     1261 catcaaaggg gcgattatta tcttcgccgt agcgctggat tcactgaaat acgcgcgtaa
     1321 gaagtgaaat gattgtggtc cgcattcggt cataaacgca cataacatca tgatctgtgt
     1381 ggttttgtag gccggataag gcgttcaagc cgcatccggc gacaggaacc aaatgccgga
     1441 tgcgtctctg gttttacaac gttaccgggt gttctttctc tcccttctta aacttcactt
     1501 ctccgagatc aatacaaccc accgggcaga cgtggccaca aagcagacaa cccacacatt
     1561 tctcggtatt acaatgcggt gtgcgggttt tctcgctcca ttccatcgcc tggtgaccgc
     1621 cgtcgtaaca ggaaatataa cagcgtccac agccaacaca tttatcaaga ttgatacggg
     1681 gatagacaat ataactgcgg tctaaatctt ccgccgggac aatattgtta ttcgccagac
     1741 ctaccatctc ctgcaacgaa tcaaatccct gatcggcgag ataatgcgac aacccgctcg
     1801 ccatatcttc tacgatgcga tagccgtact gcataatgcc ggtggtgacc tgtaacgttg
     1861 ctgcgccgag caataaaaac tccgccgcat cctcccaggt ttcaatgccg ccgataccgc
     1921 tgattgggaa atcgcgcagt tctggatggg tgcgcatttg ctgaatgaag cgcagggcga
     1981 tcggttttac cgctttaccg gaatatccgg aaatactcga ttttccgtta acgatcggca
     2041 taccgatttt ctgattaaga tcgatattgg tgatggattt aacggtgtta atcgccgcaa
     2101 tgccatctgc gccgccgcgc ttcgccgcca gcgccacttc gcacatatca ccgatattcg
     2161 gcgtcatctt cgccagcatt ggcagcgtgg aaccccgttt cactgcccga caatattttt
     2221 ctaccagctc cgggctttgc ccgacatcgc tacccatcgc atgagaagtc atttgcggac
     2281 aggagaagtt acactcgatc atatccgcgc cagcttcttg caccaggcgc gccagctcct
     2341 cccattgctg ctcattttcc cccatgatcg aagcgatcaa tactttgtcc gggtaatctt
     2401 ccttcagccg acgcagggcg gccagattct cttccaacgg atgttcagca atctgctcca
     2461 tatttttgaa gccgataaaa ccggtatctt ctttcaccag atgatcaaaa cgcggcgaga
     2521 cttcgttggc ggtaaaaaag ccgatcgttt taaacaccac accgccccaa cctgtgtcgt
     2581 aggctttggc acacatctca tagcagttgc ctaccggcga agaagagagg cagaacgggt
     2641 tgggaaactt cacgccgcaa aaagtaatcg aaagatcttt cgttaacatg agcaagctcc
     2701 ctctaaatag tgatgaatcg cctcggcggc ttctttcccg gttttcacgg catagaccac
     2761 ggttttgtca ccctcaacaa tatcgcccgc agcaaagact tgcggatcgc gggtctggta
     2821 attttgtgta ttgatagtgt tacgctgcgg ctctaactcc gcaaaggcat ccagtctggc
     2881 atgctgaccg acggcgagaa taattttatc tgccgccatc gtcagttcgc ccggtaaccg
     2941 tacatgctta aacgtgactt tattgccttc cacggctact ggcgtgaatc catcgatgat
     3001 cgaaacgccc agctcttggg cgctggtaaa ctctttttcg cttgccggaa actcatctaa
     3061 ctcttcacgc gctacgcaag ttaccgcctg acagccgaga actttcagcg tgctggctac
     3121 gtccatcgcg acatcaccgc caccgataat taatgcgctt tgtggaatgc tgatatcgcc
     3181 ttgcgcctgt cgtacacgtt gcaggaagtc gacggcaatc tcaacgtcgc tatgctcaaa
     3241 cagcggtagc ccggaaccgc ttgataaccc cacggtgacc agtaccgcgc ggttttccgc
     3301 tttcagttgc tccagggtga gtgttttacc gatttcgtta ttgcacttaa tggtcacgcc
     3361 cattttttca atacgggcga tctctgcatc cagcactgat tgcggtaacc ggaattgcgg
     3421 aataccgtta cgcaaccagc caccggggtg cgcttctttc tcataaatcg tgacgtcata
     3481 accctggttt gtcagtgtca cactggcctg caatccggca ggacctgcgc caataatcgc
     3541 gactttgccg agcgttttag taccgggctg atatttccat cccggtttgt tgttcaaaat
     3601 cagtaacaaa acgctgtaag cggccgatat caatgggagc atcaacaccg gcacgggtac
     3661 aaccgctttg acataatttc tccgtcgggc acactctggc acaaacggca ccgagggcat
     3721 tattttcgcg aattgtctcg gcagcgcctt taaaattacg aaagtagatt gagcgaataa
     3781 atttccccgg atcggtctgt gccgggcaag cctgactaca gggagcgtca tgacataata
     3841 aacagcgaga ggcttcttta atcgccagta aaggcgtaaa agccggagtg agttcatcca
     3901 gataattttg ttgcggcatg tgatcttcct taatgctatg agtaattaag gcgaacgcta
     3961 aataaatatt gcgtgctgat attaaggcta tgcgcgtggg gaaatttaaa ctgtgaaagg
     4021 attcacaaat agctgcggtt cagaatgtta tatccgcagc ttattgagtg aagtaataat
     4081 tattctcaat aattaacaga aaagagaaaa tattaacgat agaaaataag ataaacaatc
     4141 atgccgatag ataaaatccc gaagccgata tatgccacca tataagcgaa aaagagtccg
     4201 ggattttttg ctcgccagac atacaccggt tccggtgcat ttttaacccg tttatcaatc
     4261 gcgcctgcgc gccagccttt ccatgcttcg cggaaacaaa atatcgggat aaggaaaaaa
     4321 acggcaacga caaaaaactg ctgtacatcc ataactactt tccttgtttc ttttgtaatt
     4381 caagtaactg ttcgggtgtg acggcgggat acccctgcgc atcttccggc acctggtgca
     4441 tagccggaat agggaccagc ggccctaaaa aacgcggttc acgtttaaaa atataaaggt
     4501 cagccagcgc accgaaacgg gcggcaaatt cgcgaatacg tactgacagc atatctttcg
     4561 gtgacggtac ggcataacac tgagcctgaa tccccatatg cagcgcaata aataatgccc
     4621 gctcacagtg gaaacgttgg gtgataataa tgaaatcatt agtatcgaaa actttgcgtg
     4681 tacgcactat ggaatccagc gtacgaaagc ctgcgtaatc gagaacaata tctgatgggg
     4741 cgacaccagc agcgattaaa tctttgcgca tggtcatcgg ctcattataa ctttgcaatg
     4801 cgttatcgcc gctcagtaat agataattta ccttaccgct gttataggca ttaatcgctc
     4861 cttgaatgcg gtagcgataa tactgattaa ttacgccagt acgataatat tttgctgttc
     4921 cgagcaccac accgacctgg cggtagggga gatcctgcaa ttcgtcgtag atataaggcg
     4981 cggttttcca gctcatccag cgatcgaggc cgagcacagt caacagcagc aagccgataa
     5041 ggactaacag gctgaggaac acgcgcttta acatgcagga gactcgatct aagggaaatt
     5101 tccatcaggc tactttaccc gctggttttg cgcaagaaac ggcaaactgt ttgccgggat
     5161 tttcgacacc aggagagggc tggcaagccg gacaaggcgt tcacgccgca tccggcacca
     5221 ggcttaagcg agaagcacgc ggtcgatact gtgacagccg agcgctttca gcgttgcgga
     5281 ggtggcatcc cactgaatca acggcgcatc ggctttttct gccagaaccg cgcgctggat
     5341 atccgggtaa tcataaccct tgagattcaa cagaattaac gctccctgca acggtggcag
     5401 agtcgggttg aatgcggcgt tttcagcgta gctgccgctg aaaatacgac cgtctttaca
     5461 ttccagcgcg acaccgcttg gcgacttact gtaaggcatg tgcgaacggt ttgccgccgc
     5521 aatcgccgcc tgagaaagcg catcaccagt cagcgcatag ccgtgatcct gctcgtccat
     5581 cagcagcgtt ttaatctcca gatctttcgg cccaaaggca tccggcagat agtcacgtag
     5641 cgcgtgtgcc tcgcggcccg gcagatgaat acgcagatcc agaccgctgt tcagttcatt
     5701 cataaactga cggcagtgac cacaaggcgt gtagttaacg gtgatggctg caagcgcttt
     5761 ttcaccactc aaccaggcgt ggctgatcgc gctttgttcg gcatgaacgg tttgctgcat
     5821 tgtcgcacca ataaattcca tattggcacc aaaataccag gttccgctca caccgcgcgc
     5881 aattgcgcca acattaaaat tcgacaatgg cgtacgcgca caggccgccg ccagcggaag
     5941 tagtgcgaat gccagcgcgt cttcgtccag ccccgttgcg ctcttcagcg atgagacttg
     6001 ctccccggtc aacaaagcgg ggaagtactt gtctgccaga ataggttcca gtgcagattg
     6061 caagttatcc gcaagttggg caaaagcggt ttgaaaacgt ggatgcatgg cgttgcctca
     6121 taatcatgta atgggataat agtttacgaa cccgttatgg ctttatatgt gatctgaatc
     6181 tcattaatta tgcaacgcgt gaaacttaca tcaaaaatgc gcgacgcatc gcaaatttta
     6241 gcccattact gccagaataa tcgggaaaag gaacggtgcg atcagcgaag taattatccc
     6301 gcataacacc agcgctagcg aactaaatgc accttcctga taatccagct cggcgcagcg
     6361 cgctgtaccg agggcgtgcg aggcagtccc cattgccaga ccgcgcgcag ctttggtacg
     6421 aatacgaatc gcattaagca atgtatggcc aaataccgcg ccgaggatgc cgacgaaaat
     6481 cacgcaaact gcgctgattg ccggaatacc gccaatactg ccgccaaccg ccattgcaat
     6541 aggcgtggtg actgatttcg gcaggattga cgcggcgatt tccggtgaag cgcccatcaa
     6601 caatgccacg gaagtccccg tcaccatcgc aaccacgctg ccgataaaac agatggtgat
     6661 gatcgatttc cagcgcgcgc ggatctggtg tagctgctca tataaaggat aggccagcgc
     6721 gacgaccgcc ggttgcagca gatcgtttag cacttcgcta cctttaaagt aactgtcgta
     6781 agagatgccg gtcagcatta aaaaaggaat gatcaccacc attgctacca gcaacgggtt
     6841 aagcagggga aacttatacc gtgccgccag tttgcgggcg gcaaaaaaga caatcaacgt
     6901 cagcggtaat gaccaccaga tattcgccat cattcttctg atcctttctg acctacgact
     6961 ttacgttcgc cgtgtaccag ttgtgaactc cagctcacca ccagaaaaac caccagcgta
     7021 ctgacagcac aggaaaccac taccgggcca aactgcgcgc ggagcaaatc aaaatattgc
     7081 atgacgccta cgccaatcgg cacaaacaat agcgccatat agcgaatcag tacgtagcac
     7141 cccggattga cccattttgc cggaagaatt tgcaaggcca gcaggacaaa caggatcagc
     7201 atcccgatga tgctgcccgg aatggttacc ggtagcaggg aagcaatgaa aatgcctgca
     7261 tacaggcagg cataaatcag gacgaaagcg cgtaaatatt gccagataat gttcagtgtc
     7321 ttactcataa tcaacacccc agatgagatg gattcatcat acaattaatt cgtaaaacgt
     7381 gctaccgatc acattaagaa atcagcgctt attttttcgc tccccggcat tacgcaatgc
     7441 gcaacgaact caggcataca tcaagcatag agagggatta cagtttgcag caatccctct
     7501 ttgcagacct ttaatccgtt gaccataggc gctaacatgg cgcctcattt ttttgcgggt
     7561 gaagatatgc gtgtgttact ggctccgatg gagggtgtgc ttgctccgat ggagggagtg
     7621 cttgactctc tggtgcgtga attgctgacc gaagttaacg actacgatct gtgcatcacc
     7681 gagtttgtcc gcgtggtgga tcaactgctg ccggtaaaag tttttcatcg catttgccct
     7741 gagctacaaa acgccagccg gacaccatcc ggtacgctgg tgcgcgtgca gttgttgggt
     7801 cagttcccac aatggctggc agagaacgcc gcccgtgcgg tggaattagg ttcctggggc
     7861 gtggatctca attgcggttg cccgtcgaaa acggtcaacg gtagcggtgg tggggcgacg
     7921 ttactcaaag atcctgaact catctaccag ggtgcaaaag cgatgcgtga agctgtaccg
     7981 gcgcatttgc ccgtcagcgt gaaagtgcgt ctgggctggg acagcggtga gaagaagttt
     8041 gaaatcgccg atgcggttca acaggctggt gctacggagc tggtggtgca tggacggaca
     8101 aaagagcagg gttaccgcgc ggagcatatt gactggcagg cgattggcga gattcgccag
     8161 cggctgaata ttccggtgat tgccaacggc gaaatctggg actggcagag tgcgcaacaa
     8221 tgcatggcga tcagcggctg cgacgcagga ttggtcgcgg ggcgctcaat attcccaacc
     8281 tgagccgggt ggtaaaatat aacgaaccgc gaatgccgtg gccggaggtg gttgctttgc
     8341 tgcaaaaata tacccgtctg gaaaagcagg gcgataccgg gttatatcac gtagcgcgga
     8401 ttaaacagtg gttgagttat ttgcgtaaag aatacgatga agcaacagaa ttatttcagc
     8461 atgttcgggt gttgaataat tcccatgata ttgcaagggc tattcaggca attgatatcg
     8521 ataagctgcg ataatagtgg aatcgcagct tatcagagac aatgaatcgc ttattcagct
     8581 tcatcatctt gttgcgctcc tttcatgaac taagccacat attgccactg gcgcaaggtg
     8641 cgcgcagagg gaggacaatc gcctcctccc cctgcacccc cgggctctgg cgaacaaaat
     8701 cgccgctgcg cggtaccttc agcttatccc cttcggctac cgggtcgggc gcgaggtaac
     8761 gtccttgtaa gacgcgccct cagcccacat ccatgtgggc tgccccggcc ttcggggaac
     8821 gcttcagcga ttttgacgcc accaacaccg gagctgtttg caaatcaagt acacaaaata
     8881 tctagttcct gacctgacaa cttatatgcc atatctgatt tttaaaatat catcttaaat
     8941 acgccagtca ccaccagtag cccaatcagg aaaataatca atacagccca gagtataatt
     9001 ttcattggcg ttcctttatt tgtgagtgct gaataagtat aggaaaaaac gaagcccttc
     9061 gctgtcattt ataagtgatt aagataaatc ggagaatatc attcacttag tctatatttt
     9121 tctgggtatg tcgttttatt gctactgatg tattgccacg cgaaactaaa aaatatatcg
     9181 caacacacgg taatctccgc gcaccgtttc ttacctgatt attcccccat gaatcgtgat
     9241 tccttttatc cagccatcgc ctgttttccg ctgttactga tgctggccgg gtgtgcgcct
     9301 atgcatgaaa cccgccaggc gttaagccag caaacgcccg ctgcacaagt tgacaccgca
     9361 ttacccacgg cgctgaaaaa tggttggcca gacagccaat ggtggctgga gtatcacgat
     9421 aatcagctca cttcattaat taacaatgca ctacagaacg caccggatat gcaggtggct
     9481 gaacagcgca ttcagctagc tgaagcccag gcgaaggcag ttgccactca ggatggtccg
     9541 cagatcgact tttcggcgga tatggagcgg caaaaaatgt cggcagaagg gctaatgggg
     9601 ccgtttgctc tgaacgatcc ggccgcaggt acgaccggtc cgtggtacac caacggaact
     9661 tttggcttaa cggcgggctg gcatctcgat atctggggaa agaatcgggc ggaggttact
     9721 gcccgcctgg gtacggttaa agcacgggcg gcggaacgcg agcaaacccg ccaattgctg
     9781 gctggcagcg tagcccgcct gtactgggag tggcaaaccc aggcggcgtt aaacacggtc
     9841 ttgcagcaaa tagaaaaaga gcagaacacc attatcgcga ccgatcgcca gctatatcag
     9901 aacgggatta cttcttcagt tgacggtgtg gaaaccgata ttaatgccag caaaacccgg
     9961 cagcagctca acgatgtcgc ggggaaaatg aaaattattg aggcacggtt aagcgcactt
    10021 acaaatcacc agacaaagtc attgaagctt aaaccggtcg cgttgccgaa agtggcaagc
    10081 cagcttcctg atgaactggg gtactcctta ctggcccggc gggcagattt gcaggcggcg
    10141 cactggtacg ttgagtcatc gctaagcacc attgatgcgg caaaagcggc attttatcct
    10201 gacatcaacc tgatggcctt cctgcaacag gatgcgttgc acttaagcga tctgttccgt
    10261 cattccgcgc agcaaatggg cgttacggca ggcctgacgc tacctatttt cgatagtggt
    10321 cgtcttaacg ccaatctcga tatcgcaaaa gccgaaagca acttgtctat caccagctac
    10381 aacaaagcgg tggttgaagc ggtgaatgac gtggcgcggg cagccagtca ggttcagaca
    10441 cttgcggaga aaaaccagca tcaggcgcaa attgagcgcg atgccttgcg tgtggtaggt
    10501 cttgcgcagg cgcgctttaa cgcgggcatc attgctggtt cccgcgtcag cgaagccaga
    10561 atccccgcgc tgcgtgagcg ggccaatggc ctgttattgc aagggcagtg gctggatgct
    10621 tccattcaac tcactggtgc gttgggcggg ggttacaaac gctgatgata tgcgccttct
    10681 atacttaacg tttattcagc gttaagtgga gaactcgatg gcacaggttg cgattattac
    10741 cgcctccgat tcggggatcg gcaaagagtg cgcgttatta ctggcgcagc aggggtttga
    10801 tattggtatt acctggcact cagatgaaga aggggcaaaa gatactgcgc gtgaggtagt
    10861 tagccacggc gtacgtgcgg agattgtgca gctggatctc ggtaaactgc cagaaggtgc
    10921 gcaggcgctg gagaaactca ttcaacggct ggggcgtatt gatgtgctgg tgaataatgc
    10981 gggcgcaatg accaaagcgc cgtttcttga tatggctttc gatgagtggc gcaagatttt
    11041 taccgttgat gtcgatggtg catttttatg ctcacaaatt gcggcccgcc agatggtgaa
    11101 acaagggcag ggcggtcgca tcatcaacat tacgtcggta catgaacata cgccgctgcc
    11161 ggatgccagc gcctacacag ccgctaaaca tgcgctcggt gggttaacca aagcgatggc
    11221 gctggagctg gtcaggcata agattttggt gaacgcagtc gcgcctgggg cgatcgccac
    11281 gccaatgaat ggcatggatg acagcgacgt gaagcccgac gcggagcctt cgattcctct
    11341 gcggcgtttt ggcgcaacgc atgagattgc cagcctggta gcgtggctgt gctcagaggg
    11401 cgcaaattac accaccgggc agtcgttgat agtggatggc ggctttatgt tggcgaatcc
    11461 gcagttcaac ccagaatagc gcagtgaggt gcgtggttat ttcaatgggt aaaattttgg
    11521 taggcatgat aagacgcaca agcgtcgcat caggcatggt gcaccggatg tcggatgcgg
    11581 cgcgaacgcc ttacccaggg caatggtttt acgcctgatg atccggcttt ttcttcccgc
    11641 gccgtttcag ccaccagcgc acgcccacca ccagaaccac gaccagaatc aaccagaccc
    11701 agtgcttcaa atgctggtcg agattgtgca accacggcgc aatcacctga ccaccagcgt
    11761 aaccaatagt ggtaaaaatc aacgcccagg caaatgcgcc gagaatattc agcggcagaa
    11821 agattttcgg cggcagctgg ctggcaccaa tcagcgtcgg gccaatcacc cgaaagccat
    11881 acataaagcg cgtaccaatg acaaacagat acggatggcg ttggataagt ttctgcgccc
    11941 gctcaatttt atcctgatgt ttcgagaaac ggcgtaacag cttgccgcca aaccgccgtc
    12001 cgcacagata aagcacctgg tcgccaatca tgccgccaag cgccacagaa agtaccacca
    12061 gcgggaactt taatagcccc tgatgtgccg caacgcctcc cagcaaagtc acggtttcac
    12121 cttccgccag gctaccgatc accagcgcgg cataaccata ttgtgagatg agtgtattga
    12181 gatccatagg ccagtttgtc tccctttggt tgcctgtaag catacaccct ggaaatcatt
    12241 cacgctgaaa aaggacatac atcagacggt gcaaattaca tggatgaaca aaaaataacc
    12301 acaagctgac ttatacttga actgtcaggt tcatgaactc acaacaaggg ggcggtatga
    12361 gccatgtctg gggactgttt tcccatcccg atcgtgaaat gcaggtgatt aatcgcgaaa
    12421 acgaaacgat ttctcaccat tacacccacc acgttttgct gatggcggcg attccggtga
    12481 tttgcgcctt cattggcact acacagattg gctggaattt tggcgatggc actatcctga
    12541 agttatccta gtttaccgga ctggcgctgg ctgtcctgtt ttatggcgtt atgctggctg
    12601 gggttgcggt aatggggcgg gtcatctggt ggatggcgcg taattatccg cagcgtcact
    12661 gcatggtctt cgcgggctac gttgcaactc cgctgttttt aagcggtctg gtggcgcttt
    12721 atccgctggt ctggttgtgt gcgctggtcg gcacggtggc gctgttttac accggctacc
    12781 tgctttacct tggtattccg agcttcctga atatcaacaa agaggaaggc cttagcttct
    12841 ctagttcgac gctggcgatt ggcgtgctgg tactggaagt gctgctcgcc ctaaccgtta
    12901 tactatgggg ctacggttat cgtttgttct agaaagttct ttgacgttgc attgctggcg
    12961 taaatgtcag caatgcagca tttcctcacg attctccttt gacgatcgca ctttttgctc
    13021 gttatgatgg cgtcgctagc ctcagtaaat ccttactccg gcggtgcgca acccgtgcgc
    13081 gtgaaccact atctgaatgc tcatcatgcc gaaatttcga gtttctttat ttagcctggc
    13141 cctgatgctg gctgtgcctt tggcaccgca ggccgttgcg aaaacggcag ccgctaccac
    13201 cgcttcacaa ccggaaattg cctccggtag cgcgatgatt gttgatctga ataccaacaa
    13261 agtgatctat tcgaaccacc cggatctggt gcgtccgatt gcgtctatca gcaaattaat
    13321 gaccgcgatg gttgtgctgg atgcacgact gccgctggat gaaaaactaa aagtggatat
    13381 cagccagacg ccggagatga aaggggtcta ttcgcgcgta cgactgaata gcgaaatcag
    13441 ccgtaaagat atgctgttgc tggcgctgat gtcttcagaa aaccgcgcgg cggcaagcct
    13501 tgcgcaccat tatcccggtg gttacaaagc ctttattaag gcaatgaatg cgaaagcgaa
    13561 atcgctcgga atgaacaaca cgcgctttgt tgaacctacc ggattgtcgg tgcataacgt
    13621 ttcaactgcc cgtgacttaa ccaaactgct cattgccagc aaacaatatc cgttgatcgg
    13681 gcagttaagt actacccggg aagatatggc aatcttctct aacccgacgt atacgctgcc
    13741 gttccgcaat actaatcatc tggtgtatcg cgataactgg aatattcagt taaccaaaac
    13801 cggctttacc aatgcggcgg gccattgtct ggtgatgcgt acggttatca ataataaacc
    13861 ggtggcgctg gtagtgatgg acgcgtttgg caaatatacc cattttgccg atgccagccg
    13921 cctgcgtacc tggattgaaa ccggtaaagt gatgcctgtg ccggcagcag cgttgagcta
    13981 taaaaaacaa aaagccgccc aaatggcggc ggcggggcag acggcacaga acgattaagt
    14041 gaattcggat ggcgatactc tgccatccgt aatttttact ccacttcctg ccagtttttc
    14101 cgtttactgg ttttaccgat ccccggattc atgctgttgg tcggatcgtt ctcgcgatag
    14161 aacttctgca acgtctccgg tgctttatac aaatgaccga cgttatgctc ggcagggtac
    14221 tgcgcgccgc gctgctgtag cagttccagc atctgttctt ttaacgcatg cacatccacg
    14281 ccttttttca ctatgtaatc ctgatggaag acatagcaca taaaatggcc gtaatagagc
    14341 ttgtgcacca gctggctgtc gatctccggc ggtaaatgct cataccactc ggtgtcgtta
    14401 cgccgcagag cgatatccaa cgccagaatg tcttcgactt catcggaatg caccgcctga
    14461 taacgaattg ctgcgcccgc agcggcgaaa cggtgtaaaa acgctttgct gccttcctcc
    14521 ggcgtacaga caaagaaatc gccttcggcc tgtttgaaat aatctaccag ccacgatttg
    14581 gcttcaccga cgccatcgcc cgccattttt aacagcagat gatgctcgta tttatcgcgc
    14641 cagtttttca tgcgcggcgg taaatggctg gggaacaggt gaccgaattt ttgcatcgca
    14701 cggtcagtaa aatgcggacg gaagaatttc actttctcca gcatcgcatc ggtgcgtccc
    14761 ttgagattaa agaagaacgg catcttgtcg gtgcctaact tatcaatcat caggaaggtg
    14821 tctttgccgt atttttccgc aatatcgtag atatcccggt gcatatattc cccggcaacc
    14881 ggcagatttt cgaagttagc cagaatatga cggcggattt cggtcagcac ttccggctgg
    14941 ttggtgccga tataaaacac ctgctgattt ttttccgcct cgaaggtatc aagacgtact
    15001 gcaaagacgg ccagcttccc ggcgcaacca gaagattcaa ataaccgatc cggatcggcg
    15061 ttataacgtg cgggcgtgtc ggcttcaata tcacgaacgc ggtggacata gtcataatcg
    15121 tgggcgtgac gaccatcgtg acgcacatcg tcatctttga tgcgatcatc atccagcttg
    15181 ctaaggatct gctccggcgt ttcgcccaga tcaatcccca gatggttcac cagcgtcagt
    15241 ttgccgtctt catttatacg cgcgaataac gacatttcgg tatacgccgg gccacgttgc
    15301 accagcgagc cgccggagtt gttacaaata ccaccgatga ccgatgcgcc tatacacgat
    15361 gatccaatca ctgagtgcgg ttcgcgtccc agcggtttga gggctttttc cagcgaatag
    15421 agcgtggtgc ccggataggc cagcacctgt tcgcccttgc cgagaacgtg cagcttgtcg
    15481 agacgcaggg tgctgatgat cacgatatcg cgatcatagt cgttaccgtt tggcgtcgat
    15541 ccttcggtca ggcctgtatt ggcagcctgc atcagaataa ttttgtcggc ggtgacgcag
    15601 gctttcagca cccgccacaa ttccagtagt gagccaggga aaacgacagc cagcgcgtcg
    15661 ccctgaccag aacggaagcc cttgcgatag cgggccgttt ttgcgggatc ggtgagcagg
    15721 tgtgaatgac cgaccagacg ggcaagttca ttcaaaaagg ctttattatc agttgttgtc
    15781 atggaagaca ttttccactc cttgtggtgg ggaaaaaata tcacaaacta gaatagcgcc
    15841 ttgtatgaca attcagcgag tgaatatttt gaaaattcag acaataaact gagcattctt
    15901 tttctctctc catcatgctt atggcaaact acggtttttg caccattttc gctgcctcgt
    15961 cgggcaacag aggaagaaaa atccatatga aatggctatg ttcagtagga atcgcggtga
    16021 gtctggccct gcagccagca ctggcggatg atttattcgg caaccatcca ttaacgcccg
    16081 aagcgcggga tgcgttcgtc accgaactgc ttaagaaaat gacagttgat gagaaaattg
    16141 gtcagctgcg cttaatcagc gtcggcccgg ataacccgaa agaggcgatc cgcgagatga
    16201 tcaaagacgg tcaggttggg gcgattttca acaccgtaac ccgtcaggat atccgcgcca
    16261 tgcaggatca ggtgatggaa ttaagccgcc tgaaaattcc tcttttcttt gcttacgacg
    16321 tgctgcacgg tcagcgcacg gtgttcccga ttagcctcgg tctggcctcg tcttttaacc
    16381 tcgatgcagt gaaaacggtc ggacgtgtct ctgcttatga agcggcagat gatggcctga
    16441 atatgacctg ggcaccgatg gtcgatgtct cgcgcgatcc gcgctgggga cgtgcttccg
    16501 aaggttttgg cgaagatacg tatctcacct caacaatggg taaaaccatg gtggaagcga
    16561 tgcagggtaa aagcccggca gatcgctact cggtgatgac cagcgtcaaa cactttgccg
    16621 catacggcgc ggtagaaggc ggtaaagagt acaacaccgt cgatatgagt ccgcagcgcc
    16681 tgtttaatga ttatatgccg ccgtacaaag cggggctgga cgcaggcagc ggcgcggtga
    16741 tggtggcgct gaactcgctg aacggcacgc cagccacctc cgattcctgg ctgctgaaag
    16801 atgttctgcg cgaccagtgg ggctttaaag gcatcaccgt ttccgatcac ggtgcaatca
    16861 aagagctgat taaacatggc acggcggcag acccggaaga tgcggtgcgc gtggcgctga
    16921 aatccggaat caacatgagt atgagcgacg agtactactc gaagtatctg cctgggttga
    16981 ttaaatccgg taaagtgacg atggcagagc tggacgatgc tgcccgccat gtactgaacg
    17041 ttaaatatga tatggggttg tttaacgacc catacagcca tctcggtccg aaagagtctg
    17101 acccggtgga taccaatgcc gaaagccgct tgcaccgcaa agaagcgcgt gaagtggcgc
    17161 gtgaaagcct ggtgttgctg aaaaaccgtc tcgaaacgtt accgctgaaa aaatccgcaa
    17221 ccattgcggt ggttggcccg ctggcagaca gcaagcgtga cgtgatggga agctggtcgg
    17281 cggcaggtgt tgcagatcaa tccgtgaccg tgctgaccgg gattaaaaat gccgtcggtg
    17341 aaaacggtaa agtgctgtat gccaaagggg cgaacgttac cagtgacaaa ggcattatcg
    17401 atttcctgaa tcagtatgaa gaagcggtca aagtcgatcc gcgttcgccg caagagatga
    17461 ttgatgaagc ggtgcagacg gcgaaacaat ctgatgtggt ggtggctgta gtcggtgaag
    17521 cacaggggat ggcgcacgag gcctccagcc gtaccgatat tactattccg caaagccaac
    17581 gtgacttgat tgcggcgctg aaagccaccg gtaaaccgct ggtgctggtg ctgatgaacg
    17641 ggcgtccgct ggcgctggtg aaagaagatc agcaggctga tgcgattctg gaaacctggt
    17701 ttgcggggac tgaaggcggt aatgcaattg ccgatgtgtt gtttggcgat tacaacccgt
    17761 ccggcaagct gccgatgtcc ttcccgcgtt ctgtcgggca gatcccggtg tactacagcc
    17821 atctgaacac cggtcgtccg tataatgccg acaagccgaa caaatacact tcgcgttatt
    17881 ttgatgaagc taacggggcg ctttatccgt tcggctatgg tctgagctat accactttca
    17941 ccgtctctga tgtgaaactt tctgcgccga ccatgaagcg tgacggcaaa gtgacggcca
    18001 gcgtgcaggt gatgaacacc ggtaaacgcg aaggggccac ggtagtgcag atgtacttgc
    18061 aggatgtgac ggcttccatg agtcgtccgg tgaaacagct gaaaggcttt gagaaaatca
    18121 ccctgaaacc gggcgaaact cagaccgtta gcttcccgat tgatatcgag gcgctgaagt
    18181 tctggaatca acagatgaaa tatgacgccg agcctggcaa gttcaatgtc tttatcggca
    18241 ctgattccgc acgcgttaag aaaggcgagt ttgagttgct gtaatgcttt agtaagggcg
    18301 tgacatttgc gccctttgcc tgatgttcat atcttaactt gctgaatttt cgccctttgt
    18361 aggccggata aggcgctcgc gccgcatccg gcaggaaacg ccggaccgaa tatgcctctt
    18421 aagtatttat ctgattctgc aactgaatcc gtccgctcag gctaatcccg ccattatcaa
    18481 ctatgctttt ctcttaattc gctgaaaaca acagtaaaag aatgaggaaa gcatcatgcc
    18541 actctcaaag gtctgggcag gttcactggt tttgttggca gccgtgagcc tgccgctgca
    18601 cgcggcttcc cccgttaaag tcggttcaaa aatcgatact gaaggcgcgc tgctcggcaa
    18661 tatcattttg caggtactgg aaagccacgg cgtaccgacg gtcaataaag tgcaactcgg
    18721 aacgactcct gtggtgcgcg gggcgattac ttccggtgaa ctggatatct atccggaata
    18781 taccggcaat ggcgcgtttt tctttaaaga tgaaaacgat gcagcgtgga aaaacgcgca
    18841 gcaaggttac gagaaagtca aaaaactcga tgcagagcaa aacaagttaa tctggctgac
    18901 gcccgcacct gcaaataaca cctggaccat cgccgtgcgt caggatgtgg cagagaaaaa
    18961 caaactcact tcgcttgctg acctgagtcg ttatctgaaa gagggcgcac cttcaaactg
    19021 gcagcctcgg cagagtttat cgaacgcgcc gatgccttac ccgcgtttga aaaagcctat
    19081 ggctttaagc tcggtcagga tcagttgctg tcactggctg gtggcgacac ggcggtgacg
    19141 attaaagccg ctgcccagca aacttctggc gttaatgccg caatggctta cggcactgac
    19201 ggtccggtcg cggcgctggg gctgcaaacc ttaagcgatc cgcaaggcgt gcaacctatc
    19261 tacgcgcctg caccagtggt gcgtgagtcg gtgctgaaag agtatccgca aatggcacag
    19321 tggctacagc cagtcttcgc cagcctcgat gcaaaaacat tgcagcaact gaatgccagc
    19381 attgcagtgg aaggactgga tgccaaaaaa gtggctgccg actacctgaa acaaaaaggg
    19441 tgggcgaagt aatttcccgt gacttatcta cgtattaatc ctgttctggc gctgctgctg
    19501 ttgctgacgg caatcgcagc agcgctgccg tttatcagct acgcgcctaa tcgtttagtc
    19561 tcgggtgaag ggcgtcatct ctggcaactg tggccgcaaa cgatctggat gctggtgggc
    19621 gttggttgcg cctggctgac agcctgtttt attcccgcta aaaaaggcag catttttgca
    19681 ctcattctgg cgcaattcgt cttcgtattg ctggtgtggg gagctggaaa ggcggcgacc
    19741 caactggcgc aaaatggcag tgcgctggcg cgtaccagcc tcggcagtgg tttctggctg
    19801 gctgcggcgc tggcattgct ggcctgtagc gatgccatcc gccgaatctc cacgcatccg
    19861 ctgtggcgct ggttgttgca tatgcagatt gccattattc cgctgtggtt gctttactcc
    19921 ggcacgctta acgatctctc gctaatgaaa gaatacgcca accgtcagga tgtgtttgac
    19981 gacgcgctgg ctcaacatct gacgttgctg tttggtgcgg tgctgcctgc gttagtgatt
    20041 ggtgtgccat tgggcatctg gtgctacttt tccaccgcgc ggcaggggga gattttttct
    20101 ctgctcaatg tcattcagac cgtgccttcg gtggcgctct ttggcctgtt gattgcgccg
    20161 cttgccgcgc tggtgacggc ctttccgtgg ctggggaagc tcggcatagc aggaaccgga
    20221 atgacacccg cactgattgc gctggtgctc tatgccttgc tgccgctggt gcgcggcgtg
    20281 gtagtaggct tgaaccagat cccgcgcgat gtgctggaga gcgccagagc gatggggatg
    20341 agcggggcgc agcgattcct gcatgttcag ttaccgctgg cgttaccggt atttctgcgc
    20401 agcctgcggg tggtgatggt gcaaattgta ggcatggcgg tgattgcggc gttaatcggc
    20461 gcaggcggtt ttggtgcgct ggttttccag gggctgctaa gcagcgccat tgatttagtg
    20521 ttgctggggg tgatcccggt aattgttctg gcggtgctga tcgatgcgct gttcgattta
    20581 cttatcgcac tgttgaaggt gaaacgtaat gattgaattt agccatgtca gcaaactgtt
    20641 tggcgcacaa aaagccgtta acgatctcaa tctcaatttt caggaaggga gtttttcggt
    20701 gctgattggc acatctggct ccggcaaatc caccaccctg aaaatgatta accgcctggt
    20761 ggaacatgac agcggagaga tccgctttgc cggagaagaa attcgctcgc tgccagtact
    20821 ggagttgcgc cgccgtatgg gctatgccat tcaatctatt ggcctgtttc cccactggag
    20881 cgtggcacaa aacattgcca ccgtgccgca attacaaaaa tggtcgcggg cgaggattga
    20941 cgatcgtatc gacgaattaa tggcgctact ggggctggag tcaaatttac gtgagcgtta
    21001 tccgcatcag ctttccggtg gtcagcagca acgtgtggga gtagcgcgcg cactggctgc
    21061 cgatccgcaa gtcttactga tggatgaacc ttttggcgca ctggacccgg taacgcgcgg
    21121 cgcgttgcaa caagagatga cgcgcattca ccgtttgctg gggcgtacca ttgtgctggt
    21181 tactcatgat attgatgagg cgctacggct ggcagaacat ctggtattga tggatcacgg
    21241 tgaagtggtg cagcagggga atccgctgac gatgctgact cgtccggcga atgattttgt
    21301 ccgccagttt tttggacgta gtgaactggg tgtgcgcctg ctttcgttac gtagtgtggc
    21361 ggattacgtg cgtcgcgaag aacgggcaga aggtgaggca ctggcagaag agatgacgct
    21421 gcgcgatgcg ctctccctgt ttgtcgcgcg gggatgcgag gtgctgccgg tggtgaacac
    21481 gcagggccag cctagcggca cgctgcattt tcaggatctg ctggaggagg cgtaagcgta
    21541 tgaagatgtt gcgcgatccg ctgttctggc tcattgcttt gtttgtggca ctgattttct
    21601 ggctgcctta cagccagccg ctgtttgctg ccttgttccc tcaactgcca cgacccgttt
    21661 atcagcaaga aagttttgcc gctctggcac tggctcattt ctggctggtg ggaatttcga
    21721 gtttgtttgc ggtgatcatt ggtactggtg ccggaattgc tgtcactcgc ccgtggggcg
    21781 cggaatttcg cccactggtg gaaactattg ccgccgttgg acagactttt ccgcccgtcg
    21841 cagtgctggc gatcgccgtt ccggtgatcg ggtttggtct gcaaccagcg attatcgcct
    21901 tgatccttta cggtgtgctg cccgtcctgc aggcgacact tgccgggctg ggagcgattg
    21961 atgccagcgt gacagaagtt gcgaaaggta tgggaatgag tcgtggtcag cgactgcgta
    22021 aggtcgagct accgctggcg gctccggtga ttctggcggg cgtgcgaact tcggtgatta
    22081 tcaacattgg tacggcgacg atcgcctcaa cggtaggggc cagcacgctg ggtacgccca
    22141 tcatcatcgg gcttagcgga tttaataccg cgtatgtgat ccagggggcg ttactggtgg
    22201 cactggcggc gatcatcgca gaccgcctgt ttgaaaggct ggtgcaggcg cttagccagc
    22261 acgcaaaata aaggtataac ctgcgagcat gacgccacca attccgccta acgccataaa
    22321 caggaacagg gcgatgaccc caattttagc tatgcgcata atgcactcct tatgttaacg
    22381 aaaggattgt acagtaaagc gcatttgtta acgaatcat
//
LOCUS       DADMHM010000052        22352 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.053, whole genome shotgun sequence.
ACCESSION   DADMHM010000052 DADMHM010000000
VERSION     DADMHM010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22352)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22352)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22352
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.053"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(44..189)
                     /locus_tag="JN125_001736"
                     /pseudo
     CDS             complement(44..189)
                     /locus_tag="JN125_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001626279.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytoplasmic protein"
     gene            complement(298..392)
                     /locus_tag="JN125_001737"
     tRNA            complement(298..392)
                     /locus_tag="JN125_001737"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(356..358),aa:Sec,seq:tca)
     gene            685..2067
                     /locus_tag="JN125_001738"
     CDS             685..2067
                     /locus_tag="JN125_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418114.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside-pentoside-hexuronide family
                     transporter"
                     /protein_id="HAY8871546.1"
                     /translation="MKSEVLSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPA
                     GFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPD
                     LSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGM
                     LSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEAPPTTTSMR
                     EDLRDIWQNDQWRIVGLLTIFNILAVCVLGGAMMYYVTWILGTPEVFVAFLTTYCVGN
                     LIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQL
                     VTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGYDA
                     AEKAQNSATISIIIALFTIVPAICYLLSAIIAKRYYSLTTHNLKTVMEQLAQGKRRCQ
                     QQFTSQEVQN"
     gene            2077..4368
                     /gene="yicI"
                     /locus_tag="JN125_001739"
     CDS             2077..4368
                     /gene="yicI"
                     /locus_tag="JN125_001739"
                     /EC_number="3.2.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-xylosidase"
                     /protein_id="HAY8871547.1"
                     /translation="MKISDGNWLIQPGLNLIHPLQVFEVEQQDNEMVVYAAPRDVRER
                     TWQLDTPLFTLRFFSPQEGIVGVRIEHFQGALNNGPHYPLNILQDVKVTIENTERYAE
                     FKSGNLSARVSKGEFWSLDFLRNGERITGQDTNNQRNYMFERLDLGVGETVYGLGERF
                     TALVRNGQTVETWNRDGGTSTEQAYKNIPFYMTNRGYGVLVNHPQSVSFEVGSEKVSK
                     VQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEAT
                     VNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRRLKAKGLKIC
                     VWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADK
                     LKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAHIYNELVWNVLKDTVGEE
                     EAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFWSHYIGGFEN
                     TAPAHVYKCWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTQLKCRMMPYLYR
                     EAARANARGTPMMRAMMMEFPDDPAYDYLDRQYMLGDNVMVAPVFTEAGDVQFYLPEG
                     RWTHLWHNDELDGCCWHKQQHSFLSLPIYVRDNTLLALGNNDQRPDYAWHEGTAFHLF
                     NLQDGHEAVCEVPAADGSVIFTLKAARTGNTITVTGAGEAKNWTLCLRNVVKVNGLQD
                     GSQAESEQGLVVKPQGNALTITL"
     gene            complement(4421..6130)
                     /locus_tag="JN125_001740"
     CDS             complement(4421..6130)
                     /locus_tag="JN125_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA family protein"
                     /protein_id="HAY8871548.1"
                     /translation="MKFIGKLLLYILIALLVVIAGLYFLLQTRWGAEHISAWVSENSD
                     YHLAFGAMDHRFSAPSHIVLENVTFGRDGQPATLVAKSVDIALSSRQLTEPRHVDTIL
                     LENGTLNLTDQTAPLPFKADRLQLRDMAFNSPNSEWKLSAQRVNGGVVPWSPKAGKVL
                     GTKAQIQFSAGSLSLNDVPATNVLIEGSIDNDRVTLTNLGADIARGTLTGNAQRNADG
                     SWQVENLRMADIRLQSEKSLTDFFAPLRSVPSLQIGRLEVIDARLQGPDWAVTDLDLS
                     LHNMTFSKDDWQTQEGKLSMNASEFIYGSLHLFDPIINAEFSPQGVALRQFTSRWEGG
                     MVRTSGNWLRDGKTLILDDAAIAGLEYTLPKNWQQLWMETTPGWLNSLQLKRFSASRN
                     LIIDIDPDFPWQLTTLDGYGANLTLVTDHKWGVWSGSANLNAAAATFNRVDVRRPSLA
                     LTANSSTVNISELSAFTEKGILEATASVSQTPQRQTHISLNGRGVPVNILQQWGWPEL
                     PLTGDGNIQLTASGDIQANAPLKPTVSGQLHAVNAAKQQVTQTMNAGIVSSGEVTSAE
                     LVQ"
     gene            complement(6251..7642)
                     /gene="xanP"
                     /locus_tag="JN125_001741"
     CDS             complement(6251..7642)
                     /gene="xanP"
                     /locus_tag="JN125_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine/proton symporter XanP"
                     /protein_id="HAY8871549.1"
                     /translation="MSVSTLESENAQPVAQTQNSELIYRLEDRPPLPQTLFAACQHLL
                     AMFVAVITPALLICQALGLPAQDTQHIISMSLFASGVASIIQIKAWGPVGSGLLSIQG
                     TSFNFVAPLIMGGTALKTGGADVPTMMAALFGTLMLASCTEMVISRVLHLARRIITPL
                     VSGVVVMIIGLSLIQVGLTSIGGGYAAMSDNTFGAPKNLLLAGVVLALIILLNRQRNP
                     YLRVASLVIAMAAGYALAWFMGMLPESNEPMTQELIMVPTPLYYGLGIEWSLLLPLML
                     VFMITSLETIGDITSTSDVSEQPVSGPLYMKRLKGGVLANGLNSFVSAVFNTFPNSCF
                     GQNNGVIQLTGVASRYVGFVVALMLIVLGLFPAVSGFVQHIPEPVLGGATLVMFGTIA
                     ASGVRIVSREPLNRRAILIIALSLAVGLGVSQQPLILQFAPEWLKNLLSSGIAAGGIT
                     AIVLNLIFPPEKQ"
     gene            7922..9127
                     /gene="gltS"
                     /locus_tag="JN125_001742"
     CDS             7922..9127
                     /gene="gltS"
                     /locus_tag="JN125_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/glutamate symporter"
                     /protein_id="HAY8871550.1"
                     /translation="MFHLDTLATLVAATLTLLLGRKLVHSVSFLKKYTIPEPVAGGLL
                     VALALLVLKKSMGWEVNFDMSLRDPLMLAFFATIGLNANIASLRAGGRVVGIFLIVVV
                     GLLVMQNAIGIGMASLLGLDPLMGLLAGSITLSGGHGTGAAWSKLFIERYGFTNATEV
                     AMACATFGLVLGGLIGGPVARYLVKHSTTPNGIPDDQEVPTAFEKPDVGRMITSLVLI
                     ETIALIAICLTVGKIVAQLLAGTAFELPTFVCVLFVGVILSNGLSIMGFYRVFERAVS
                     VLGNVSLSLFLAMALMGLKLWELASLALPMLAILVVQTIFMALYAIFVTWRMMGKNYD
                     AAVLAAGHCGFGLGATPTAIANMQAITERFGPSHMAFLVVPMVGAFFIDIVNALVIKL
                     YLMLPIFAG"
     gene            complement(9161..11242)
                     /gene="recG"
                     /locus_tag="JN125_001743"
     CDS             complement(9161..11242)
                     /gene="recG"
                     /locus_tag="JN125_001743"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HAY8871551.1"
                     /translation="MTGRLLDAVPLSSLTGVGAALSNKLAKINLHTVQDLLLHLPLRY
                     EDRTHLYPIGELLPGVYATVEGEVLNCNISFGGRRMMTCQISDGSGILTMRFFNFSAA
                     MKNSLATGRRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQ
                     ATLRKLTDQALDLLDTCAIEELLPPELSQGMMTLPEALRTLHRPPPTLQLSDLETGQH
                     PAQRRLILEELLAHNLSMLALRAGAQRFHAQPLSANDALKNKLLAALPFKPTGAQARV
                     VAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHA
                     NNFRNWFEPLGIEVGWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLA
                     LVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSMIDE
                     LPPGRTPVTTVAIPDTRRTDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATW
                     EELKLALPELNVGLVHGRMKPAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMI
                     IENPERLGLAQLHQLRGRVGRGAVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQ
                     KDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPEVQRLARHIHERYPQQAKALIER
                     WMPETERYSNA"
     gene            complement(11248..11937)
                     /gene="trmH"
                     /locus_tag="JN125_001744"
     CDS             complement(11248..11937)
                     /gene="trmH"
                     /locus_tag="JN125_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(18)-2'-O)-methyltransferase
                     TrmH"
                     /protein_id="HAY8871552.1"
                     /translation="MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVG
                     VHEVHAVWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNA
                     VDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE
                     AQRQRQNAGMYLRENSMLPEAEQQHLLFEGGYPVLAKVAKRKGLPYPHVNQQGEIEAD
                     ADWWATMQAAG"
     gene            complement(11944..14052)
                     /gene="spoT"
                     /locus_tag="JN125_001745"
     CDS             complement(11944..14052)
                     /gene="spoT"
                     /locus_tag="JN125_001745"
                     /EC_number="3.1.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional GTP
                     diphosphokinase/guanosine-3',5'-bis pyrophosphate
                     3'-pyrophosphohydrolase"
                     /protein_id="HAY8871553.1"
                     /translation="MYLFESLNQLIQTYLPEDQIKPLRQAYLVARDAHEGQTRSSGEP
                     YITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSK
                     LDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIAR
                     ETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILS
                     EIEGRLQEAGIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSDTCYRV
                     LGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMG
                     VAAHWAYKEHGETSTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFT
                     PEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIITAPG
                     ARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKLNEIPQENI
                     QRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLQHGDASIPPATQSHGHLPIKGADGV
                     LITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCRNIRGYQKEPEKFMAVEWDKETAQE
                     FITEIKVEMFNHQGALANLTAAINTTTSNIQSLNTEEKDGRVYSAFIRLTARDRVHLA
                     NIMRKIRVMPDVIKVTRNRN"
     gene            complement(14071..14346)
                     /gene="rpoZ"
                     /locus_tag="JN125_001746"
     CDS             complement(14071..14346)
                     /gene="rpoZ"
                     /locus_tag="JN125_001746"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013511051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HAY8871554.1"
                     /translation="MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEEND
                     KTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR"
     gene            complement(14401..15024)
                     /gene="gmk"
                     /locus_tag="JN125_001747"
     CDS             complement(14401..15024)
                     /gene="gmk"
                     /locus_tag="JN125_001747"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HAY8871555.1"
                     /translation="MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP
                     RPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLD
                     IDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHY
                     AEYDYLIVNDDFDTALTDLKTIIRAERLRMSRQKQRHDALISKLLAD"
     gene            15282..16964
                     /gene="ligB"
                     /locus_tag="JN125_001748"
                     /pseudo
     CDS             15282..16964
                     /gene="ligB"
                     /locus_tag="JN125_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418104.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigB"
     gene            complement(16961..17578)
                     /locus_tag="JN125_001749"
     CDS             complement(16961..17578)
                     /locus_tag="JN125_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312548.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HAY8871556.1"
                     /translation="MLLHILYLVGITAEAMTGALAAGRRRMDTFGVIIIATATAIGGG
                     SVRDILLGHYPLGWVKHPEYVIIVATAAVLTTIVAPVMPYLRKVFLVLDALGLVVFSI
                     IGAQVALDMGHGPIIAVVAAVTTGVFGGVLRDMFCKRIPLVFQKELYAGVSFASAVLY
                     IALQHYVSNHDVVIISTLVFGFFARLLALRLKLGLPVFYYSHEGH"
     gene            complement(17870..18694)
                     /gene="dinD"
                     /locus_tag="JN125_001750"
     CDS             complement(17870..18694)
                     /gene="dinD"
                     /locus_tag="JN125_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312547.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA damage-inducible protein D"
                     /protein_id="HAY8871557.1"
                     /translation="MNEHHQPFEEIRHYGTEGQEFWSARELAPLLDYRDWRNFQKVLA
                     RATQACEASNQAASDHFVETTKMVVLGSGAQRELEDVHLSRYACYLVVQNGDPAKPVI
                     AAGQTYFAIQTRRQELADDEAFRQLREDEKRLFLRNELKEHNKQLVEAAQQAGVATAI
                     DFAIFQNHGYRGLYGGLDQKAIHQRKGLKKNQNILDHMGSTELAANLFRATQTEEKLK
                     RDGVNSKQQANTTHFDVGRKVRQTIQELGGTMPEELPTPQVSIKQLENSVKITEKK"
     gene            19128..19487
                     /locus_tag="JN125_001751"
     CDS             19128..19487
                     /locus_tag="JN125_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004202368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871558.1"
                     /translation="MRMTSRKKEILSYFEPDNLEWVTGEIGAPPFDVSGVAYLLHGMV
                     SFDKRHQLESTRRTLESMVAGGLLERVTVYESRQIRRGGETNATVVRYGLPGQCAVMR
                     DTGGADNAISGEYMRVS"
     gene            complement(19480..20022)
                     /locus_tag="JN125_001752"
     CDS             complement(19480..20022)
                     /locus_tag="JN125_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016244020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid pRiA4b ORF-3 family protein"
                     /protein_id="HAY8871559.1"
                     /translation="MYQLKITIRDSKPPIWRRVLVPEQIPFSELHAVIQLAFGWNDEH
                     LYMFEKGRKGDPGSEYRVWGEDESMGNAAITPLWAALQNDGDKLVYTYDFGDWWDCVI
                     VLEKQTHDTSNQPISCLRGKGTTPVENSGGLHGYNELLLQARESDNPEQAEIHNFLML
                     DIERRVYDLSSINDRLQALN"
     gene            complement(20143..20328)
                     /locus_tag="JN125_001753"
     CDS             complement(20143..20328)
                     /locus_tag="JN125_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002436675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871560.1"
                     /translation="MTPREIALLTIAKLEHGGHQLTQADQREIERSVNADIARRDRFR
                     EMMRAPAYQWKKPAPRR"
     gene            complement(20560..21171)
                     /locus_tag="JN125_001754"
     CDS             complement(20560..21171)
                     /locus_tag="JN125_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001205651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871561.1"
                     /translation="MRDRTRSYTTDLPRIGLPFLANMRSRLADAEPGTQLYTQTESGT
                     LYAFRQADSYAMTINGVTRAIRTTTTKAGYGVREWYACPHCMKRAAKLYIGKKDIGCR
                     ACWKLHYKSQSADILDRMRMKIRQQRCAIWGSNDLANNLFNDIRMFPKPKGMRWATFD
                     RKRAELSVMEMAYWQAFSPVVDRITGVIERKAGKAARGIGLTL"
     gene            complement(21865..22215)
                     /locus_tag="JN125_001755"
     CDS             complement(21865..22215)
                     /locus_tag="JN125_001755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871562.1"
                     /translation="MKPYILAAGLISSAPALSAIHCGGFTIQPDRYRTTINGDVVHIV
                     DAQFYGAPRDFSQAAIKLLPDAITTTDRQYRLETQGGNALLELMTRENPPRVLNRERC
                     DAGLTSFGWYTSAP"
BASE COUNT         5122 a         5658 c         5964 g         5608 t
ORIGIN      
        1 gtcgtataaa aaagggtgtt atggagcgtg taaaacaaca tcttcacctt aatggcgata
       61 cagttggctg agagccagca gggggcaaat cacctgcaaa taaacacggc acatgctggc
      121 gcgcatatcg cggatgcgtt cgaggacaga agaaccgaca ggcggattct tcagccgctc
      181 atcgtccatc acaaaacctt agaccaggta ttcctgaagc cgattgaata ttgagcagta
      241 gaaaatatct ggattgacag tattacaagg ggttggagaa cgtcagaaga ggcattttgg
      301 cggaagatca caggagtcga acctgtccgg gaccgctggc ggccccaact ggatttgaag
      361 tccagccgcc tcaccggaga cgacgatctt ccgcgcctcg attgctacat ggaggcgggg
      421 cgcattatag ctacttcctt gagtttctac atcccccaga tcagtttttt ccgcctaata
      481 cacgcagcgt attatcacga aagcattata gttcatataa aacccatatt ttacaatgat
      541 atatgagcgg aattaacgct accacgatca cataaaacaa gaatcataaa ttaataacca
      601 gatatcggaa tattcgctct cacagggatg gtttacaaaa tgcgttatcg gtctcagcac
      661 ccctatagca tcaaggaaaa gcagatgaag agtgaagtgt tgtccgttaa agagaaaatt
      721 ggttatggca tgggagacgc cgccagccac attattttcg ataacgtaat gttatatatg
      781 atgttctttt ataccgatat ttttggcatt cctgccggtt ttgtcggaac catgtttttg
      841 gtcgctcgtg cactggatgc gatttccgat ccttgcatgg ggttgttggc cgatcgaacg
      901 cgctctcgct ggggtaaatt tcgtccgtgg gtactgtttg gcgcactgcc attcgggatc
      961 gtctgtgtac tggcctatag cacgccagat ctcagtatga acggcaaaat gatctatgca
     1021 gcaattactt acaccctact taccttactt tataccgtcg tcaatatccc ttactgcgca
     1081 ttgggtggtg taatcaccaa tgacccgact cagcgtatct cgctgcaatc ctggcgtttt
     1141 gtgctggcga ccgcgggagg catgctttct actgttctga tgatgccact ggttaattta
     1201 attggcggtg ataataaacc actcggtttc cagggcggta tcgcggtcct ttccgtggtg
     1261 gcattcatga tgctggcatt ttgtttcttc accactaaag aacgcgttga agcaccacct
     1321 acaacaacgt ctatgcggga agatttacgt gatatctggc aaaacgacca gtggcggatt
     1381 gtcggtttac taaccatttt caatatcctg gcggtgtgcg tactcggtgg ggcgatgatg
     1441 tattacgtca catggatttt gggcacgccg gaagtgtttg tcgcttttct caccacttat
     1501 tgcgtgggta acctgattgg ttccgcactg gcaaaacctc tgaccgactg gaaatgtaaa
     1561 gtcactatct tctggtggac gaacgccctg ctggcagtga ttagcctcgc gatgttcttt
     1621 gttcccatgc aggccagcat cactatgttt gtcttcatct tcgtgattgg tgtgttgcat
     1681 caactggtga cacctatcca gtgggtaatg atgtccgata ccgtcgacta cggcgagtgg
     1741 tgcaatggta aacgcctgac cgggatcagt tttgctggca cgctgtttgt gctcaaactg
     1801 gggttggcct tcggcggcgc tcttatcggc tggatgctgg cttatggcgg atatgatgcg
     1861 gcagaaaaag cgcagaacag cgccacgatt agcatcatta ttgcgctatt cacgattgtt
     1921 ccggcgatct gttatttgct gagcgcgatt atcgctaaac gctactactc actcacgacg
     1981 cacaatctga aaaccgttat ggaacagctg gctcagggta aacgccgttg ccagcaacaa
     2041 ttcacctctc aagaagtgca gaactaagga acggcaatga aaattagcga tggaaactgg
     2101 ttgattcaac ctggcctcaa tttgattcac ccgcttcagg tgttcgaggt tgaacagcag
     2161 gataatgaaa tggtggtcta tgctgccccc cgtgatgtgc gtgaacgtac ctggcagctt
     2221 gatacgcctt tatttacgct gcgctttttc tccccacagg aaggtattgt cggtgtgcgg
     2281 attgagcatt ttcagggagc gctgaataac ggtcctcatt atccgctcaa tattttgcag
     2341 gacgtgaagg tcacaatcga aaacacagaa cgttatgctg agtttaaaag tggcaactta
     2401 agcgcgcgtg tcagcaaagg tgagttctgg tcactcgatt ttctgcgcaa cggtgaacgt
     2461 attaccggtc aggacacgaa taatcaacga aattatatgt ttgagcggct tgatcttggc
     2521 gttggcgaaa cagtttatgg tctgggagag cgttttactg ccctggtgcg caatggtcag
     2581 acggtagaga cctggaaccg ggacggcggc acaagtactg aacaggcgta taaaaatatc
     2641 ccgttctata tgactaaccg tggctatggg gtgctggtca atcaccccca gagtgtctct
     2701 tttgaagtgg gatcggagaa agtctccaaa gtgcagttca gcgttgagag cgaatatctc
     2761 gaatactttg ttatcgacgg tccgacgccg aaagcggtac ttgatcgtta tacccgtttt
     2821 actggtcgtc cggcgctgcc gcccgcatgg tccttcggcc tgtggctaac cacttcattt
     2881 accaccaact acgacgaagc gacggtaaac agctttatcg atggtatggc ggaacgcaat
     2941 ctgccgctgc atgttttcca ctttgactgt ttctggatga aagccttcca gtggtgcgat
     3001 tttgagtggg acccgctgac tttcccggac ccggaaggga tgatccgccg cctgaaagcg
     3061 aaagggctga aaatctgcgt ctggattaac ccctatatcg gtcaaaaatc ccccgtcttt
     3121 aaagagttac aagagaaagg ctatttactc aaacgcccgg acggttcgct atggcagtgg
     3181 gataaatggc agccaggtct ggcgatttat gactttacca atccggatgc ctgcaaatgg
     3241 tacgccgaca aactgaaagg tctggtcgcg atgggcgttg attgctttaa gaccgacttt
     3301 ggcgaacgta tcccaactga tgttcagtgg tttgacggtt ccgatccgca gaaaatgcat
     3361 aaccattatg cgcacatcta caacgaactg gtgtggaacg tgctcaagga caccgttggt
     3421 gaggaagaag ctgtcttgtt tgcccgctcg gcctccgtcg gtgcgcagaa attcccggta
     3481 cactggggtg gcgattgtta cgctaactac gaatcaatgg cggaaagcct gcgcggtggt
     3541 ttgtctattg gcctttcagg ttttggcttc tggagccact atatcggcgg ctttgaaaat
     3601 accgctccgg cgcacgttta caaatgctgg tgcgcgtttg gtttgctctc cagccatagc
     3661 cgtttacacg gtagcaaatc ttatcgtgtg ccgtgggcct acgatgatga gtcctgtgat
     3721 gtggtgcgct tcttcacgca actgaaatgc cgcatgatgc cgtatctgta tcgtgaagct
     3781 gcgcgtgcaa acgcgcgggg tacgccgatg atgcgggcca tgatgatgga gttcccggac
     3841 gatccggctt atgattacct tgaccgtcaa tacatgttag gcgacaacgt gatggttgcg
     3901 ccggtgttca ctgaagcggg cgatgtgcag ttctacctgc cggaaggtcg ctggacacac
     3961 ctgtggcaca acgatgagct cgacggttgt tgctggcata aacagcagca cagcttcctg
     4021 agtctgccca tttatgtgcg tgataacacc ctactggcgc tgggcaacaa cgatcaacgt
     4081 cccgattacg cgtggcacga aggcacggca ttccacctct ttaatctgca agacgggcat
     4141 gaagccgtct gtgaagtgcc cgctgctgac ggatcggtga tctttacttt aaaagcagca
     4201 cgtactggca acacgattac tgtgactggt gcgggcgagg cgaagaactg gacactgtgc
     4261 ctgcgcaatg ttgtgaaagt aaatggtctg caagacggtt cgcaggctga aagtgagcag
     4321 gggctggtgg tgaagcctca agggaatgcg ctgacaatta cgttgtaatc tattgatgga
     4381 atgccgggta cgtctgagtc gtacccggcg agattgatgt ttactgcacc agctctgccg
     4441 acgtaacttc accgctggaa acgatgccag cattcatggt ttgagtcact tgctgctttg
     4501 cggcgttcac ggcatgcaat tgcccgctaa ccgtaggttt cagcggggca ttggcctgaa
     4561 tatctccact ggcggtaagc tgaatattgc cgtcgccagt caacggtaat tcaggccatc
     4621 cccattgttg caaaatattc accggcacac cgcgtccatt caggctgata tgggtctgac
     4681 gttgtggcgt ttgtgaaaca ctggcagtgg cttccagaat gcctttttca gtaaatgcac
     4741 tcagttcgct gatattcacc gtgctgctgt tggcggtcag cgccagcgac gggcgacgaa
     4801 catcaacacg attgaatgtc gcggcggcgg cattcagatt cgccgagcca ctccagacgc
     4861 cccatttatg atcggtaacc agcgtcaggt tggcaccgta accatcgagc gtggtgagct
     4921 gccacgggaa gtcagggtcg atatcaatga tcagattgcg gctggcgcta aatctcttca
     4981 gttgcaggct gtttaaccaa ccgggtgtcg tttccatcca caactgttgc cagtttttcg
     5041 gcaaggtata ttccagcccg gcaattgccg catcatcaag gatcaacgtt ttcccgtcac
     5101 gcagccagtt ccctgacgtt ctgaccatac ccccttccca gcggctggtg aactggcgca
     5161 gcgctacgcc ctgcggggaa aattccgcgt ttataatcgg gtcaaataaa tgcagcgaac
     5221 cataaatgaa ctcgctagcg ttcatcgaca gtttgccttc ttgtgtctgc cagtcatctt
     5281 tactgaaggt catgttgtgc aagctgagat cgaggtcggt caccgcccag tccggacctt
     5341 gcaaacgagc atcgatcact tccaggcgac caatctgcaa cgacgggaca gagcgtaatg
     5401 gcgcaaagaa gtcggttagc gatttttcgc tttgtagacg tatatccgcc atgcgcaggt
     5461 tttccacttg ccagctgccg tcggcgttac gctgcgcgtt tccggttaat gtcccgcggg
     5521 cgatgtcggc acccaggtta gtcagcgtaa cgcgatcgtt atcaatactg ccttcaatca
     5581 gtacattggt ggcaggaaca tcattgagcg aaagcgatcc ggcactaaac tgaatctgcg
     5641 ccttcgtacc cagcacttta ccggcttttg gtgaccacgg aactacgccg ccatttaccc
     5701 gctgcgcgct cagtttccat tcgctattcg ggctattaaa cgccatatca cgcagttgca
     5761 gacgatcggc tttgaacggt agcggcgcgg tctggtcggt gagattcagc gtcccgtttt
     5821 ccagcaggat ggtatcgaca tggcgtggtt cggtcagttg ccgactgctt agcgcaatgt
     5881 cgacactttt ggccaccagg gtcgcgggct gaccatcacg accaaacgtg acattctcca
     5941 gcacgatatg agatggcgcg gaaaaacggt gatccatcgc cccgaaggcc agatgatagt
     6001 cgctattctc ggaaacccat gcgctgatat gttctgctcc ccagcgggtt tgcagaagaa
     6061 aatagaggcc agcgatcacc actaacagag cgatgagaat gtagagaagc agcttcccaa
     6121 taaatttcat ggtcttccat cccgtgaaat gcacataaga gagttatgca cgatttacgc
     6181 gcaatcctca aggcgggaat ggtgaaagag gtgagactgc ggcggtaatt atcttaccgc
     6241 cgccagtgaa ttactgtttt tctggtggga aaatcagatt cagcacgatg gcagtaatac
     6301 cgcccgcggc gatcccggag gagagcaggt ttttcagcca ttcaggggca aactgcaaaa
     6361 tcagcggctg ctgagacacg cccagaccaa ccgccagcga cagcgcgata atcagaatcg
     6421 cccgacggtt cagcggctca cgagaaacga tacgcacacc ggaggcggcg atggtgccaa
     6481 acattacaag cgttgcgccg cccagaaccg gttctggaat gtgttgtaca aaaccgctca
     6541 ctgccgggaa cagacccagc acgatcaaca tcagcgcgac gacaaaaccg acatagcggc
     6601 tggcaacacc agtcaactgg atcactccgt tgttttgccc gaagcaggag ttcgggaagg
     6661 tgttaaacac cgccgaaaca aacgagttca ggccgtttgc cagcacgccg cctttcaggc
     6721 gtttcatgta cagcggaccg gacactggct gttcggaaac gtcagaggtc gacgtgatat
     6781 cgccaatggt ttccagcgaa gtgatcataa agaccagcat cagcggcagc agcagactcc
     6841 attcaatgcc aagaccgtaa tagagcggcg ttggcaccat aatcagttct tgcgtcatcg
     6901 gttcgttgct ttctggcaac atgcccataa accacgccag cgcatatccg gccgccatcg
     6961 caatcaccag tgaggccacg cgtaagtaag ggttacgttg acggttaagc aggataatta
     7021 aggctaagac cacgcctgcc agcagcagat ttttcggtgc gccgaaggtg ttatcgctca
     7081 tggctgcgta accgccgcca atggacgtta acccaacctg aattagcgac aggccgataa
     7141 tcatcaccac aacgccagaa accagcggcg taataatgcg gcgcgccaga tgcagaacgc
     7201 gggagatcac catctcggtg caacttgcca gcatcaacgt gccgaacaaa gccgccatca
     7261 tggtaggaac atcagcacca ccggttttca gcgcggtacc gcccataatc agcggggcaa
     7321 caaagttgaa gctggtgccc tgaatagaca acagcccgga gccaaccgga ccccaggcct
     7381 taatttgaat aatcgatgcc acaccggagg caaacagcga catactaata atgtgttgcg
     7441 tgtcttgtgc cggtaaaccc agcgcctggc agattaatag cgctggcgtg atcaccgcaa
     7501 cgaacatcgc cagcagatgc tgacaggcgg caaacagggt ttgaggaagc ggcggacgat
     7561 cttcaagacg gtaaatcagt tcgctgtttt gagtctgcgc aaccggttgc gcattttctg
     7621 actcgagggt ggaaacagac atcgaaaaca atcccgtggt agcaaagcgg gcattttagc
     7681 tgaccgaaag agaaaagcaa acgtttgcca catcatcatc taaatattta aatgagataa
     7741 atgcactttt ttatataact tttggtattt ttctgcttaa aatccatgcc atttgttcat
     7801 taacagctga gaatttgacc caggaaagca taactcgata cccgtcatag ttcatgaagt
     7861 tgccactgcg cgatgaagta tgacgagtat gaaagagtga tgcggataca aaggagtaac
     7921 tatgtttcat ctcgatactt tagcaacgct tgttgccgca acgctgacgt tgctgctcgg
     7981 gcgtaagttg gtccattccg tctccttttt gaagaaatac accataccgg aacctgttgc
     8041 gggtggtttg ttggtggcgc tggcgctact agtactgaaa aaaagcatgg gctgggaagt
     8101 caactttgat atgtccctgc gcgatccgtt aatgctggct ttcttcgcca ccattggcct
     8161 gaacgccaac attgccagtt tgcgtgccgg tgggcgtgtg gttggcatct tcttgattgt
     8221 ggttgttggt ctgttggtga tgcaaaatgc cattggcatt ggtatggcta gcctgttagg
     8281 gcttgatccg ctgatggggc tgttggccgg ttctattacg ctttccggcg gtcacggtac
     8341 gggcgctgca tggagtaaat tgttcattga acgttatggc ttcaccaatg cgacggaagt
     8401 ggcgatggcc tgtgcaacgt tcggtctggt gctgggcggc ttgattggcg gtccggtggc
     8461 gcgctatctg gtgaaacact ccaccacgcc gaacggtatt ccggatgacc aggaagtccc
     8521 gacggcgttt gaaaagccgg atgtgggacg catgatcacc tcgttggtgc tgattgaaac
     8581 tatcgcgctg attgctatct gcctgacggt ggggaaaatt gttgcgcaac ttttggctgg
     8641 cactgctttt gaactgccga ccttcgtctg tgtactgttt gttggcgtga ttctgagcaa
     8701 cggtctgtca ataatgggct tttaccgcgt ctttgagcgt gcggtatccg tgctgggtaa
     8761 cgtaagcttg tcgttgttcc tggcgatggc gttgatgggg ctgaaactgt gggagctggc
     8821 ttcgctggcg ctgccgatgc tggcgattct ggtggtacag accatcttca tggcgttgta
     8881 tgccatcttc gttacctggc gcatgatggg caaaaactac gatgcggcag tgctggctgc
     8941 gggtcactgt ggttttggcc tcggtgcaac gccaacggca atcgccaaca tgcaggcgat
     9001 cactgaacgc tttggcccgt cgcacatggc gtttttggtg gtgccgatgg tcggtgcgtt
     9061 ctttatcgat atcgtcaatg cgctggtaat taagttgtat ttgatgttgc cgatttttgc
     9121 cggttaaccg atgaagcggc ggtcttctca ccgccgcctt ttacgcattc gagtaacgtt
     9181 ctgtctccgg catccagcgt tctatcaagg cttttgcctg ttgtgggtaa cgttcgtgaa
     9241 tatgtcgcgc caggcgctga acttccggga tcatcgcctg atcgcgcagt aaatccgcca
     9301 ctttaaattc agcattaccc gtctgacgcg tgcctaacaa ttcgccaggg ccgcgaatct
     9361 ccagatcttt ttgcgcaatc acaaaaccgt cgttactgtc gcgcagcact tgcaggcgaa
     9421 tttgcgccgt tttagaaagc ggcgttttgt agagcagcac gcagtgagaa gccaccgcgc
     9481 cacgacctac gcgcccgcgc agctggtgta actgcgccag acccagacgc tcagggtttt
     9541 cgataatcat caggctggcg ttaggcacat caacaccgac ttcaataacg gtagtggcaa
     9601 ccagcagatg tagctcacct tgtttaaacg acgccatcac cgcctgtttc tcggctggtt
     9661 tcatccgccc gtgtaccagg ccaacattca attctggtag cgccagtttc aactcttccc
     9721 aggtagcttc cgccgcctgc gcttccagta actctgactc ttcaatcaac gtacaaaccc
     9781 agtacgcctg acgaccttca gttatgcagg catggcgcac gcggtcaatg atgtcggtac
     9841 ggcgggtatc aggaatagcg accgtagtca ctggcgtgcg gcctggcggc agctcatcta
     9901 tcatcgaggt atcgagatcg gcatacgccg tcattgccag cgtgcggggg atcggcgtgg
     9961 cggtcatgat caactgatgc ggatggaagc cttgctgctg gcctttctcc cataacgcca
    10021 gacgctgatg cacgccaaag cgatgttgtt cgtcgataat caccagcgcc agaccgttaa
    10081 actgcacctg ttcctggaag atggcgtgcg taccaacaat catctgcacc tgaccgctgg
    10141 cgatggcttc ctgctgagac agtcgcgctt tgcctttctg cttaccggcg agccagccca
    10201 cttcgatacc gagcggttca aaccagttgc ggaagttatt ggcgtgctgt tcggcgagta
    10261 attcggttgg tgccatcaat gccacctgtt tgccgtgggc aatcgcacgc agcgcggcga
    10321 gggcggcgac cagcgtttta ccggaaccta catcgccctg taccaggcgc atcatcggca
    10381 catccagcgc catatcgcgc tcgatctccg ccactacgcg tgcctgtgcg cccgttggct
    10441 tgaacggtaa ggctgcgagg agtttatttt tcagcgcatc attggcgctc agcggctggg
    10501 catgaaaacg ctgtgctccg gcacgtaagg ctaacatgct gaggttgtgc gccagcagtt
    10561 cttccagaat cagacgacgt tgcgccggat gctgcccggt ttccagatcg ctaagctgta
    10621 gcgtcggtgg cgggcggtgc aaagtgcgca acgcttccgg tagcgtcatc attccttgtg
    10681 acagttccgg cggcaggagt tcttcaatgg cgcaggtgtc gagcagatcc agcgcctggt
    10741 cggttaattt acgcagcgtg gcctgcttta cgccttccgt tgttggataa accggcgtga
    10801 gcgtttcctg taattctggc gtgctgagat cgccctgcac gcggtattcc gggtggatca
    10861 tctccgcacc atatttaccg cgctttgctt cgccataagc cagtacacgg cggcccgtcg
    10921 ccaggctatt tttcattgcc gcgctgaaat tgaaaaagcg catggtgagg atgccggaac
    10981 cgtcgctgat ctggcaggtc atcatccgcc gaccgccgaa ggagatattg cagttcagca
    11041 cttcgccttc caccgtggca taaacgcccg gcagtagttc tccgatgggg tagagatggg
    11101 tgcgatcttc gtagcgcagg ggaaggtgta agagtagatc ctgcacggta tgcaggttga
    11161 ttttcgccag tttgttacta agtgctgcgc caacgcccgt tagggaactg agtgggacag
    11221 catctaacag gcgacctgtc atggcactta ccctgcagcc tgcatagtag cccaccagtc
    11281 ggcatcagct tcgatctcgc cttgctgatt gacgtgggga taaggcaggc ctttgcgttt
    11341 tgcgactttc gccagcaccg gatagccgcc ttcaaacaac aggtgttgtt gctctgcttc
    11401 cggcaacatg ctgttttcac gcaggtacat gcctgcattt tgccgctgac gctgggcttc
    11461 gtaaagaatg agggctgagg caacggaaac attcagcgac tgcaccatgc cgatcatcgg
    11521 aatgatgatg tcctgatccg ccagggccaa tgcttcctgc gtgatgcccg ttttctcctg
    11581 tcccatcaaa atgcaggtcg ggcgagtgta atcaatttcg cggaaatcga cagcgttatc
    11641 agaaagatgg gttgccagaa tctgcatgcc ctggcctttg agatgagcga cggcatcgcc
    11701 aatggtgcgg tgtgttttca cctgtaccca gctgttacta cccgccgctg ccgaagccat
    11761 ggtgcgcatg cggctaccag gccagacggc gtgaacttca tgtacgccaa cggcatctgc
    11821 ggtacgaata atcgcagaaa cgttatgagg tttgtggacc tgctccatgc agacggtcag
    11881 atcaggctgc cgcctggcga gcatttcgca gatgcgtgca taacgtgttg ggttcataaa
    11941 acattaattt cggtttcggg tgactttaat cacgtctggc atcacgcgga ttttgcgcat
    12001 gatattcgcc agatgcacac ggtcacgagc ggtcagacga ataaaggcgc tgtagacgcg
    12061 accatctttc tcttccgtat tcaaactttg aatattcgaa gtcgtggtgt taattgccgc
    12121 cgtcaggttt gccagcgcac cctgatgatt gaacatctcc accttgattt cggtgatgaa
    12181 ctcctgcgcc gtctctttat cccattccac agccataaac ttctctggct ctttctggta
    12241 gccacggatg ttacggcagg attcatggtg gatcaccaga cctttaccgg ggctgacgtg
    12301 ggcgataatc gggtcgccag gaatagggcg gcagcatttc gcaaaggtga tcagcacgcc
    12361 atcagcgcct ttgatcggca gatgcccgtg gctttgagtc gccggtggaa tggaggcgtc
    12421 cccatgttgt agatttttcg cgaccaccac gctcattgcg ttaccaaggc cgatttctgc
    12481 cagcagatcg tcaagcgttg ccagcttcat gcgatccagc tcgcgctgaa tattttcctg
    12541 cgggatttca ttgagcttac ggctaccacc caaagcatgg ttgagcagac gacggcccag
    12601 gcttacagaa tcatcacgct tgaggttttt cagcaactga cgaattttgg cgcgcgcttt
    12661 cgagctaacg acaaagttca gccaagcggc attcgggcga gcgcccggag cggtaatgat
    12721 ttcaacggtc tgaccgctag taagcggctg cgacagcggg taaggctggc ggtcgacgcg
    12781 tgcgcccacg caggcatggc cgatatcggt atgcactgca taagcgaagt cgacgggcgt
    12841 tgcaccggca ggcagctcga caatgcgccc ttccggtgtg aaaacgtaaa tctcatccgg
    12901 gaagagatcg gatttaacgc tctcgataaa ttcaaacgaa ctaccggcgc tctgttgcag
    12961 ctccagcagg ctttgcatcc agcgctgggc gcgtatttgt gcggtagtac tggtttcgcc
    13021 gtgctcttta taagcccagt gcgcggcaac acccatctcc gccatctgat ccatatcttc
    13081 ggtacggatc tggacctcaa ccggcacgcc gtgcgggcca atcatcgagg tgtgcaacga
    13141 ctgatagccg ttcgcttttg gaatggcgat atagtctttc acgcggcccg gacgcggctt
    13201 gtacaggctg tgcatctggc ccagcacgcg ataacaggtg tcagaatcat tgacgatcac
    13261 gcggaaagcg tagatgtcca tgattgagtg aaaacgctgc tctttgagca ccattttgca
    13321 gtaaatcgaa taaagatgct tttcgcgacc actgacgcgg cacggtattc ccgcttcctg
    13381 caaacgccct tcgatttcag aaagaatctt ctggatcatc tctttacggt tgccgcgcgc
    13441 ggctttcacc acttctttga ttacgcgata acggttggga tacagcgcct caaaacccag
    13501 ctcttcgagt tcggttttaa tgtggtggat acctaaacgg tgcgccagcg ggctgtaaat
    13561 ttcgagagtt tcacgggcga tgcggcgacg tttgtccggg cgaagtgagc ccagcgtgcg
    13621 catgttgtgg gtacggtcgg caagtttgat gaggatgacg cggatatcct gcaccatcgc
    13681 cataatcatc ttgcgaaagt tttcggcctg cgcctctttc ttatcgcgga acttgagttt
    13741 atcaagtttc gacaccccct ctaccagctc ggcgacgctt ttaccaaaaa gctgttccat
    13801 atcctggtag gtggcgggag tatcttcaat cacgtcatgc agcagcgccg ccatcagcgt
    13861 ttcatagtcg agtttcatct cggccagaat gcaggcaacc gctaccgggt gcgtgatata
    13921 gggttcaccg cttgaacgtg tttgcccctc gtgagcatca cgtgcaacga gatacgcctg
    13981 ccgcagaggc ttgatttggt cttccggcag gtaggtttga atcagttgat tcaggctttc
    14041 aaacagatac aagggcgacc cgctttgtga ttaacgacga ccttcagcaa tagcggtaac
    14101 ggcttgtaat tcagcggctt cctgctcttg ctgttcctgg cgttcgcgaa cgtcgaggat
    14161 ctggttgttg atcagacctt cttcgatttc gcgcagcgcg attacagtgg ttttatcgtt
    14221 ttcttccggt accagcggat cctttccgcc tacctgcatc tgacgagcgc gacgcgcggc
    14281 gaccagtacc aggtcaaaac ggttaccaat tttctctaca gcgtcctgaa cagttacgcg
    14341 tgccatactt aaaaagctcc acaggtgaag aaatgactgg gcatgatact gaaatcaggt
    14401 tcagtctgcc aacaatttgc tgattaaagc gtcatgacgc tgcttttggc ggctcatgcg
    14461 cagacgttcg gcgcgaataa tggtcttcaa atcggtcaac gcggtatcga agtcatcatt
    14521 cacaatcagg taatcatatt cggcgtaatg gctcatttct gcaacagctt gcgccatacg
    14581 ctttgcaatg acctcttcgc tgtcctgacc gcgaccgcgt agacggcggt ccagttcaat
    14641 tttagacggc ggtaaaataa agatactccg cgcgtgcggc atcttctggc gaatttgctg
    14701 cgcgccctgc cagtcgatat cgagaaaaac atcgacaccg gtcgccagta cttgctcaat
    14761 ggcctcacgc gaagtgccat agtaattacc aaaaacttct gcgtgttcga ggaacgcatc
    14821 tctgctaatc atttctttaa attcatcatg attaacaaag aaataatgtt caccgtggac
    14881 ttcaccagga cgcggttggc gtgtggtgtg tgaaacagaa acctgggtgt catacaacgg
    14941 ttgggttttt aataaagcct gaatcaggct ggatttaccc gcgccactgg gggcagaaac
    15001 aatataaagc gtgccttgag ccatgagtat ctttcgtatg tgattagcga aataaagcct
    15061 acatacgagc ttattataca cggcgcggcc atgtgacgta gcccttgctc acactttttg
    15121 cgcaaagttg ttgcgttttg cgtagctgct tccgcatttg cctgtgattt actgcaataa
    15181 agacgattct caggaagcgt cctcgcagac tccgtttttg ccactcggct ttgccttcac
    15241 cacgttgtat atctgccagc ctgactacag cggaggtgaa gatgaaagta tggatggcga
    15301 tattaataag tatcttgtgc tggcaatcat ctgtgtgggc ggtctgtccg gcctggtcgc
    15361 cagccagagc acaggaagaa attttccgcc agcaacagca aataaaacag tgggacgatg
    15421 actactggaa ggaaggaaaa agtgaggtgg aagacggtgt ttacgatcag ttaagcgccc
    15481 gtcttacgca gtggcaacgc tgctttgtga gcgagccccg cgacgtgatg atgccgcctt
    15541 taaatggtgc ggttatgcat ccggttgccc atacgggtgt acgcaaaatg gcggataaaa
    15601 acgcattaag tctgtggatg cgagaacgta gcgatctttg ggtgcagcca aaagttgatg
    15661 gcgttgcggt aaccctggtt tatcgggacg ggaaactgaa caaagcaatc agtcgcggta
    15721 atggcctgaa aggcgaggac tggacgcaga aagttagctt aatttccgct gtgccgcaaa
    15781 ccgttagcgg gcctttagcc aacagtacgc ttcaggggga aatatttctc cagcgcgagg
    15841 ggcatatcca acaacaaatg gggggaataa atgcccgcgc aaaagttgct ggcttgatga
    15901 tgcgccagga cgatagcgac acgctgaatt ctctgggcgt ttttgtctgg gcatggccgg
    15961 atggaccgca gttaatgtct gatcgtttaa aagagctggc taccgcaggt tttactctaa
    16021 cgcagacgta tacccgtgcg gtgaaaaatg ctgatgaagt tgcgcgcgta cgcaatgagt
    16081 ggtggaaagc ggaattaccc ttcgtcaccg atggcgtagt tgtacgagcg gcgaaagagc
    16141 cagaatcccg ccattggcta ccgggccagg cagagtggct ggtggcttgg aaatatcaac
    16201 ctgtagctca ggttgccgaa gtgaaggcga ttcagtttgc ggtgggtaag agcggtaaaa
    16261 tatcggtggt tgcgtcactc gcatctgtca tgctggatga taaaaaagtc cagcgggtga
    16321 atattggttc cgtcaggcgc tggcaggagt gggatattgc gcctggtgat cagattctcg
    16381 tcagccttgc cggtcagggt attcctcgca ttgatgatgt ggtgtggcgc ggtgcagaac
    16441 gtacaaaacc gacaccgcca gaaaaccgct ttaactcgtt gacctgctac tttgcttctg
    16501 atgtttgtca ggaacagttc atttcacgct tagtctggct ggggtcaaaa caggttcttg
    16561 ggctggatgg cattggtgag gccggttggc gcgcgctgca tcagactcat cgctttgagc
    16621 atatcttttc ttggctttta ttaacgccag agcaattaca gaacacgccg gggatcgcga
    16681 aaagtaaaag tgcgcagtta tggcatcagt ttaatctggc tcgtaagcag ccttttactc
    16741 gctgggtgat ggcaatggga ataccgctaa cccgggcggc gcttaatgcc agtgatgaac
    16801 ggtcctagtc gcaactttta tttagcacgg agcagttctg gcagcagctg ccggggactg
    16861 gatctgggcg cgccagacag gttattgaat ggaaggaaaa tgcgcaaatc aagaagctgg
    16921 gcagttggct ggctgcccag cagatcacag gttttgaacc ttagtgacct tcgtggctgt
    16981 agtaaaagac cggtaatccc agcttaagac gtagcgccag taagcgggca aaaaagccga
    17041 ataccagggt ggagataatc accacatcat ggttagaaac atagtgttgc agcgcgatgt
    17101 acagcacggc ggaggcaaat gagacaccag catacaactc tttctggaat accagtggga
    17161 tgcgtttaca gaacatatcg cgcaaaacgc cgccaaacac gccggtggtt accgccgcga
    17221 caacggcaat aattgggccg tgccccatat ccagtgcaac ctgtgcgccg atgatagaaa
    17281 agaccaccag tccgagcgca tcgagcacca gaaacacttt gcgcaggtaa ggcattacag
    17341 gagcaacgat agtggtgagt actgcggcgg tagcgacgat aatcacatat tccgggtgtt
    17401 tgacccagcc gagcggatag tggcccagca gaatatcgcg cactgaccct ccgccaattg
    17461 cggtggcggt cgcaataata attacgccaa atgtatccat gcgccgtcgt ccggccgcca
    17521 gcgcccccgt catggcttcg gcagtgatgc caaccaaata caaaatgtgt aacagcatgg
    17581 ttctctccct aaaaatctgt ctggcagggt agcgatttgt gcgcattgtc acgattgaga
    17641 ttttttaagg taagaggaaa ttgataactt gtagttatgt gaaatcgcta ttttctgtag
    17701 cgtagatgca ttattctgag ttcttgtctg agaaaatgca taagaaaaaa taggttaaaa
    17761 ttgaggggtg gaaaagaaag gtgcaatgtt tagccattgt gttcactgca cctggacttt
    17821 ggcttacgca tcgggtatct caattaagaa aaagagtttt tagtttctgc tatttcttct
    17881 ctgtaatttt tacactgttt tccaactgct tgatgctgac ctgcggggtc ggcaactcct
    17941 caggcatggt tccgccaagt tcctgaatgg tttgcctcac cttgcgaccc acgtcaaagt
    18001 gtgtggtgtt tgcttgctgt tttgaattca cgccatcccg cttgagtttt tcttctgttt
    18061 gggtagctcg aaagagatta gccgccagtt ctgttgaacc catatgatcc aggatattct
    18121 gattcttttt cagccccttc cgctgatgaa tagctttctg atctaatcca ccatacagcc
    18181 cccggtaacc atgattctga aatatggcga aatcgatagc tgtcgctacc ccagcttgct
    18241 gcgctgcctc aaccaattgt ttgttatgtt ctttcaattc atttctcaga aaaagacgct
    18301 tttcgtcttc acgaagttgc ctgaaagctt catcgtcagc cagctcctgc cgtcgggtct
    18361 ggatagcaaa ataagtttgc cctgccgcaa taaccggttt cgcagggtcg ccgttttgta
    18421 ctaccaggta acaggcatag cgggagagat gaacatcttc aagttctcgt tgagcccctg
    18481 aacctaatac aaccattttg gtggtttcaa cgaaatggtc agatgcagct tgattgctgg
    18541 cttcgcacgc ttgagtcgcg cgggccagta ccttttgaaa attgcgccag tcccgataat
    18601 ccagtaacgg tgccaattct ctagctgacc aaaattcttg cccttcagtg ccataatgcc
    18661 gtatttcttc aaaaggttga tgatgttcgt tcattgccca ctccatgtga tatcgattgc
    18721 aaagaaagta aatctgtaac tgtatttata tacagttgtg agtatctcac gttctcagtg
    18781 tgctgggcaa aaaaacatcg caaaatctgg agcaggcacg caaaacagaa ttgaagttgc
    18841 ggggaagaaa aatgccgctc tgtttgagtg ggcggcattt gtgaaggctg aaaagtaaga
    18901 attggcgtta cgagttgaat ctgtttattg agtagtggct ttaaacgccc gtggttgctg
    18961 tgtttcttgt aatgcatttt ctcagtaggt acacccttgt gtacacggta ttttgaggcg
    19021 ctgtctttgg ctgctcgttt tatgctctca tgcttgctgt tctggcctct tatcttttgc
    19081 gccttattgt atgatagtgc tatcccacaa taaggaacct gccagctatg agaatgacca
    19141 gccgcaaaaa agagatactt agctactttg aaccggataa cctcgaatgg gtgactggtg
    19201 agattggtgc gccgccgttc gatgtgtcgg gtgtggccta cctgcttcat ggcatggtgt
    19261 cgttcgataa gcgtcaccag ctcgaatcaa cccggcgcac actggaaagc atggttgctg
    19321 gtggactgct tgagcgggtg acagtgtatg aatcgcgcca gatacggcgc ggcggtgaga
    19381 ctaacgcaac ggtcgtgcgc tacggtttgc ccggtcagtg cgctgttatg cgcgatactg
    19441 gcggcgctga taacgcaata tcaggcgaat atatgcgggt cagttaagag cctgcaatct
    19501 gtcgttgatg ctgctcaggt cgtaaacccg gcgctcaata tccagcatca ggaaattgtg
    19561 gatctcggcc tgctcaggat tatcagactc tctggcctgt aatagcaatt cattgtaacc
    19621 atgcaagccg cctgagtttt ccactggggt ggtgcctttc ccacgcaggc agctaatggg
    19681 ctgattgctc gtatcgtgtg tttgcttctc cagcacaatg acgcaatccc accagtcgcc
    19741 aaagtcatac gtgtaaacca gcttgtcacc atcattctgg agcgctgccc atagtggtgt
    19801 gattgccgca ttacccatgc tttcatcctc accccatacg cgatactcgc taccgggatc
    19861 acctttacgc cctttctcga acatatacag gtgttcgtca ttccagccaa aagccaactg
    19921 gatcaccgcg tgaagttcac taaaggggat ttgctctgga accagcacac gccgccatat
    19981 aggtggtttg ctgtctcgga tggttatctt tagctggtac atgcaaatcc tgaataaatg
    20041 cgaatcggaa ggataacgat actgacgtac tcacaattct gtaaaggtga ataaaggaaa
    20101 tttgcttaat acgcataagt tacatgcgga ataatcccgt atctacctgc gcggcgctgg
    20161 cttcttccac tggtaggcag gtgctcgcat catttcgcgg aacctgtcgc gccgggctat
    20221 atcggcatta actgagcgtt ctatctcccg ttgatctgcc tgtgtaagct ggtggcctcc
    20281 atgctcaagt ttggcgatgg tcaataaggc tatttcgcgt ggtgtcatac gtcataccct
    20341 ctggaaggat gaaacacgcc cggattaaat ttcatttttc gcgggtatga aaaaacgatg
    20401 gggcgggcag tccttaaggc tcaggattgc agagatttgg cctccccctc ccggtgatag
    20461 tttattgctt gatgtggacg gcttgctata ttggcggcga atgcaaattg tcgcagaagt
    20521 ctatcccgtt ctctgacgcc ccgtgcgggc gttttgcttt tatagagtca ggccaatgcc
    20581 tctggctgct tttcctgctt tacgctcaat aacgcccgtg attctgtcca ctaccgggct
    20641 gaatgcctgc cagtaagcca tctccataac tgataactct gcccgcttcc tgtcaaacgt
    20701 agcccagcgc atcccctttg gttttgggaa catgcgaatg tcattaaaca gattattggc
    20761 aaggtcattg ctgccccata tcgcgcatcg ctgctggcgt atcttcatgc gcatcctgtc
    20821 cagtatgtcg gcactctggc ttttatagtg aagtttccag cacgcccggc agccaatgtc
    20881 tttcttgccg atatacagct ttgcagcccg cttcatacag tgggggcaag cgtaccattc
    20941 ccggacgcca tacccggcct tcgtggttgt ggtgcgaata gcccgcgtca cgccgttgat
    21001 tgtcatggcg tagctgtcgg cttgccggaa ggcatacaac gttccgcttt cggtctgggt
    21061 ataaagctgc gtacccggtt cagcatccgc cagcctgcta cgcatgttcg caaggaatgg
    21121 caaccctata cggggcaggt cggtggtata gctgcgcgtt ctgtctctca ctggctggcc
    21181 tcctgcgaat tactgcgcat taactgcgaa cggtgcgcaa attgaatacg aaataatatg
    21241 cgtattttac tgtaaattgc gcaccaattt tgcaatttca catcaataaa gccagtaacc
    21301 gcgcgggggt tgaggatggt ttgcgcattg atatccgttt cgttttgcgg agatattttg
    21361 ttaactgcgc aattcgcaat ttactgcgca atgctcgggt ttcgtattcg gaggattttc
    21421 cactttgcgt actgcgttcg actgtagaaa cccagcgata atgcgcctta caggctggta
    21481 cgcaactgcg aatcggtttc gtatctggtg agagtgcgta cctgagttgc gtactaaaac
    21541 cttagcaaaa attagcatcg tactgatacc gccacctcca aactgattga gccaaagcca
    21601 gcaatatcag acgtcttagc cattttgcgc acgcatctgt ttgcaatgcc ggcgttagaa
    21661 ttcgtcaggt ggtacgcacg ttaaatgcgc agttttgccg cgtaccggac tgcgtactgc
    21721 gaaccaatgc cgcaaacctg aatatttttg acgacctgaa tcacaattag gctcctagcc
    21781 cgctactggc aaggacttgg ctccattaga gttttaaatc cgtcaagaac agtccaatat
    21841 tttaggctgc gctcggaacg aacatcacgg cgcagaagtg taccaaccga aacttgttaa
    21901 cccggcatcg cagcgctcac gattaagcac acgtggcggg ttttctctgg tcatcaactc
    21961 aagcaaggca ttgcctccct gcgtctctag gcggtattgc ctatcggtag tggtaatggc
    22021 atccggcaat aactttatgg cggcctggct aaagtctcgc ggtgcgccgt aaaattgcgc
    22081 atcaacaata tgaaccacat cgccgttaat cgttgtccga taacggtctg gctgtatggt
    22141 aaagccccca caatggatag cagatagtgc cggtgccgag gagatcaggc cggctgccag
    22201 aatgtatggc ttcattcttc acccaccaat tcatccagtt cagccagcgt cataggcttt
    22261 ggtacaggct tgtcaatatc acccataatg cgctggaagt tgctggcagg catatggtta
    22321 cggttctcca gtattttcgc cagcgcgata ac
//
LOCUS       DADMHM010000053        22278 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.054, whole genome shotgun sequence.
ACCESSION   DADMHM010000053 DADMHM010000000
VERSION     DADMHM010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22278)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22278)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22278
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.054"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(18..93)
                     /locus_tag="JN125_001756"
     tRNA            complement(18..93)
                     /locus_tag="JN125_001756"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(58..60),aa:His,seq:gtg)
     gene            complement(152..228)
                     /locus_tag="JN125_001757"
     tRNA            complement(152..228)
                     /locus_tag="JN125_001757"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(192..194),aa:Arg,seq:ccg)
     gene            complement(331..1716)
                     /locus_tag="JN125_001758"
     CDS             complement(331..1716)
                     /locus_tag="JN125_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HAY8871563.1"
                     /translation="MADNKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPS
                     VLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPFFGYLTAWSYWFMWMA
                     VGISEITAIGVYVQFWFPEMAQWIPALIAVALVALANLAAVRLYGEIEFWFAMIKVTT
                     IIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVEL
                     IGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNESGSNGSPFVLTFA
                     KIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAMAKVSRHGVPVA
                     GVAVSIAILLIGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKAA
                     IASHPFRSILFPWANYVTMAFLICVLIGMYFNEDTRMSLFVGIIFMLAVTAIYKVFGL
                     NRHGKAHKLEE"
     gene            complement(1907..2647)
                     /gene="rffM"
                     /locus_tag="JN125_001759"
     CDS             complement(1907..2647)
                     /gene="rffM"
                     /locus_tag="JN125_001759"
                     /EC_number="2.4.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide
                     N-acetylmannosaminouronosyltransferase"
                     /protein_id="HAY8871564.1"
                     /translation="MNNNTTAPTYTLRGLQLIGWRDMQHALDYLFADGQLKQGTLVAI
                     NAEKMLTIEDNAEVRELINAAEFKYADGISVVRSVRKKYPQAQVSRVAGADLWEELMA
                     RAGKEGTPVFLVGGKPEVLAQTEAKLRNQWNVNIVGSQDGYFKPEQRQALFERIHASG
                     AQIVTVAMGSPKQEIFMRDCRLVHPDALYMGVGGTYDVFTGHVKRAPKIWQTLGMEWL
                     YRLLSQPSRIKRQLRLLRYLRWHYTGNL"
     gene            complement(2650..4002)
                     /gene="wzyE"
                     /locus_tag="JN125_001760"
     CDS             complement(2650..4002)
                     /gene="wzyE"
                     /locus_tag="JN125_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-antigen assembly polymerase"
                     /protein_id="HAY8871565.1"
                     /translation="MSLLQFSGLFVVWLLCTLFIATLTWFEFRRVRFNFNVFFSLLFL
                     LTFFFGFPLTSVLVFRFDVGVAPPEILLQALLSAGCFYAVYYVTYKTRLRKRVADVPR
                     RPLFTMNRVETNLTWVILMGIALVSVGIFFMHNGFLLFRLNSYSQIFSSEVSGVALKR
                     FFYFFIPAMLVVYFLRQDSKAWLFFLVSTVAFGLLTYMIVGGTRANIIIAFAIFLFIG
                     IIRGWISLWMLAAAGVLGIVGMFWLALKRYGMNVSGDEAFYTFLYLTRDTFSPWENLA
                     LLLQNYDNIDFQGLAPIVRDFYVFIPSWLWPGRPSMVLNSANYFTREVLNNHSGLAIS
                     PTLIGSLVVMGGALFIPLGAIVVGLIIKWFDWLYELGNREPNRYKAAILHSFCFGAIF
                     NMIVLAREGLDSFVSRVVFFIVVFGACLMIAKLLYWLFESAGLIHKRTKSSLRTQVEG
                     "
     gene            complement(3999..5078)
                     /gene="rffT"
                     /locus_tag="JN125_001761"
                     /gene_synonym="wecF"
     CDS             complement(3999..5078)
                     /gene="rffT"
                     /locus_tag="JN125_001761"
                     /gene_synonym="wecF"
                     /EC_number="2.4.1.325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TDP-N-acetylfucosamine:lipid II
                     N-acetylfucosaminyltransferase"
                     /protein_id="HAY8871566.1"
                     /translation="MTVLIHVLGSDIPHHNRTVLRFFNDALAATSEHAREFMVVGKDD
                     GLSDSCPALSVQFFPGKKSLAEAVIAKAKANRQQRFFFHGQFNPTLWLALLSGGIKPS
                     QFFWHIWGADLYELSSGLRYKLFYPLRRLAQKRVGCVFATRGDLSFFAKTHPKVRGEL
                     LYFPTRMDPSLNTMANDRQREGKMTILVGNSGDRSNDHIAALRAVHQQFGDTVKVVVP
                     MGYPPNNEAYIEEVRQAGLELFSEENLQILSEKLEFDAYLALLRQCDLGYFIFARQQG
                     IGTLCLLIQAGIPCVLNRENPFWQDMTEQHLPVLFTTDDLNEDIVREAQRQLASVDKN
                     TIAFFSPNYLQGWQRALAIAAGEVA"
     gene            complement(5075..6325)
                     /gene="wzxE"
                     /locus_tag="JN125_001762"
     CDS             complement(5075..6325)
                     /gene="wzxE"
                     /locus_tag="JN125_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid III flippase WzxE"
                     /protein_id="HAY8871567.1"
                     /translation="MSLAKASLWTAASTLVKIGAGLLVGKLLAVSFGPAGLGLAANFR
                     QLITVLGVLAGAGIFNGVTKYVAQYHDNPQQLRRVVGTSSAMVLGFSTLMALVFVLAA
                     APISQGLFGNTDYQGLVRLVALVQMGIAWGNLLLALMKGFRDAAGNALSLIVGSLIGV
                     LAYYVSYRLGGYEGALLGLALIPALVVIPAAIMLIKRGVIPLSYLKPSWDNGLAGQLS
                     KFTLMALITSVTLPVAYIMMRKLLAAQYSWDEVGIWQGVSSISDAYLQFITASFSVYL
                     LPTLSRLTEKRDITREVVKSLKFVLPAVAAASFTVWLLRDFAIWLLLSNKFTAMRDLF
                     AWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQFTLLMVFAHWLIPAHGALGAAQ
                     AYMATYIVYFSLCCGVFLLWRRRA"
     gene            complement(6327..7457)
                     /gene="rffA"
                     /locus_tag="JN125_001763"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
     CDS             complement(6327..7457)
                     /gene="rffA"
                     /locus_tag="JN125_001763"
                     /gene_synonym="fcnA"
                     /gene_synonym="wecE"
                     /EC_number="2.6.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxygalactose transaminase"
                     /protein_id="HAY8871568.1"
                     /translation="MIPFNAPPVVGTELDYMQSAMGSGKLCGDGGFTRRCQQWLEQRF
                     GSAKVLLTPSCTASLEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRP
                     DTMNIDETLIEAAITDKTRVIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMST
                     YKGRALGTIGHIGCFSFHETKNYTAGGEGGATLINDKALIERAEIIREKGTNRSQFFR
                     GQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLALWQNYYDALAPLAKAGR
                     IELPSIPDGCVQNAHMFYIKLRDIDDRSALINFLKEAEIMAVFHYIPLHGCPAGEHFG
                     EFHGEDRCTTKESERLLRLPLFYNLSPVNQRTVIATLLNYFS"
     gene            complement(7462..8136)
                     /gene="rffC"
                     /locus_tag="JN125_001764"
                     /gene_synonym="wecD"
     CDS             complement(7462..8136)
                     /gene="rffC"
                     /locus_tag="JN125_001764"
                     /gene_synonym="wecD"
                     /EC_number="2.3.1.210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026256.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-amino-4,6-dideoxy-D-galactose
                     acyltransferase"
                     /protein_id="HAY8871569.1"
                     /translation="MPVRASIEPLTWENAFFGVNSAIVRITSEAPLLTPDALAPWSRV
                     QAKIVASNTGELDALQQLGFSLVEGEVDLALPVNNVSDSGAVVAQETDIPALRQLASA
                     AFAQSRFRAPWYAPDASGRFYAQWIENAVRGTFDHQCLILRAASGDIRGYVSLRELNA
                     TDARIGLLAGRGAGAELMQTALNWAYARGKTTLRVATQMGNTAALKRYIQSGANVEST
                     AYWLYR"
     gene            complement(8114..8995)
                     /gene="rfbA"
                     /locus_tag="JN125_001765"
     CDS             complement(8114..8995)
                     /gene="rfbA"
                     /locus_tag="JN125_001765"
                     /EC_number="2.7.7.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate thymidylyltransferase RfbA"
                     /protein_id="HAY8871570.1"
                     /translation="MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLA
                     GIREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFLNGEPS
                     CLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDNFRAISLEEK
                     PKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRG
                     FAWLDTGTHDSLIEASTFVQTVEKRQGFKIACLEEIAWRNGWLDDEGVKRAASSLAKT
                     GYGQYLLELLRARPRQY"
     gene            complement(9062..10081)
                     /gene="rffG"
                     /locus_tag="JN125_001766"
     CDS             complement(9062..10081)
                     /gene="rffG"
                     /locus_tag="JN125_001766"
                     /EC_number="4.2.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-glucose 4,6-dehydratase"
                     /protein_id="HAY8871571.1"
                     /translation="MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSL
                     APVAQSDRFAFEKVDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNI
                     VGTYTLLEAARAYWNTLTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPY
                     SASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVYG
                     NGQQIRDWLYVEDHARALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEELAPN
                     KPHGVVHYRDLITFVADRPGHDLRYAIDASKIARELGWLPQETFESGMRKTVQWYLAN
                     ESWWK"
     gene            complement(10081..11343)
                     /gene="wecC"
                     /locus_tag="JN125_001767"
     CDS             complement(10081..11343)
                     /gene="wecC"
                     /locus_tag="JN125_001767"
                     /EC_number="1.1.1.336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetyl-D-mannosamine dehydrogenase"
                     /protein_id="HAY8871572.1"
                     /translation="MSFATISVIGLGYIGLPTAAAFASRQKQVIGVDINQYAVDTINR
                     GEIHIVEPDLASVVKTAVEGGFLRASTTPVEADAWLIAVPTPFKGDHEPDMTYVESAA
                     RSIAPVLKKGALVILESTSPVGSTEKMAEWLAEMRPDLTFPQQVGEQADVNIAYCPER
                     VLPGQVMVELIKNDRVIGGMTPVCSTRASELYKIFLEGECVVTNSRTAEMCKLTENSF
                     RDVNIAFANELSLICADQGINVWELIRLANRHPRVNILQPGPGVGGHCIAVDPWFIVA
                     QNPQQARLIRTAREVNDHKPFWVIDQVKAAVADCLAATDKRASELKIACFGLAFKPNI
                     DDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLTGLCTLAQLDEALATADVLVM
                     LVDHSQFKVINGDNVHQQYVVDAKGVWR"
     gene            complement(11340..12470)
                     /gene="wecB"
                     /locus_tag="JN125_001768"
     CDS             complement(11340..12470)
                     /gene="wecB"
                     /locus_tag="JN125_001768"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312746.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HAY8871573.1"
                     /translation="MKVLTVFGTRPEAIKMAPLVHALAKAPFFEAKVCVTAQHREMLD
                     QVLKLFSIVPDYDLNIMQPGQGLTEITCRILEGLKPILAEFKPDVVLVHGDTTTTLAT
                     SLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFSPTETSRQNLLREN
                     VADSRIFITGNTVIDALLWVRDQVMSSDTLRSELAANYPFIDPDKKMILVTGHRRESF
                     GRGFEEICHALADIATTHQDIQIVYPVHLNPNVREPVNRILGHVKNVILIDPQEYLPF
                     VWLMNHAWLILTDSGGIQEEAPSLGKPVLVMRDTTERPEAVTAGTVRLVGTDKQRIVE
                     EVTRLLKDENEYQTMSRAHNPYGDGQACSRILEALKNNRISL"
     gene            complement(12526..13572)
                     /gene="wzzE"
                     /locus_tag="JN125_001769"
     CDS             complement(12526..13572)
                     /gene="wzzE"
                     /locus_tag="JN125_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709589.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECA polysaccharide chain length modulation
                     protein"
                     /protein_id="HAY8871574.1"
                     /translation="MTQPMPGKPAEDAENELDIRGLFRTLWAGKLWIIGMGLAFALIA
                     LAYTFFARQEWSSTAITDRPTVNMLGGYYSQQQFLRNLDVRSNMASADQPSVMDEAYK
                     EFVMQLASWDTRREFWLQTDYYKQRMVGNSKADAALLDEMINNIQFIPGDFTRAVNDS
                     VKLIAETAPDANNLLRQYVAFASQRAASHLNDELKGAWAARTIQMKAQVKRQEEVAKA
                     IYDRRMNSIEQALKIAEQHNISRSATDVPAEELPDSEMFLLGRPMLQARLENLQAVGP
                     AFDLDYDQNRAMLNTLNVGPTLDPRFQTYRYLRTPEEPVKRDSPRRAFLMIMWGIVGG
                     LIGAGVALTRRCSK"
     gene            complement(13584..14687)
                     /gene="wecA"
                     /locus_tag="JN125_001770"
     CDS             complement(13584..14687)
                     /gene="wecA"
                     /locus_tag="JN125_001770"
                     /EC_number="2.7.8.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine--undecaprenyl-phosphate
                     N-acetylglucosaminephosphotransferase"
                     /protein_id="HAY8871575.1"
                     /translation="MNLLTVSTDLISIFLFTTLFLFFARKVAKKVGLVDKPNFRKRHQ
                     GLIPLVGGISVYAGICFTFGIVDYYIPHASLYLACAGVLVFIGALDDRFDISVKIRAT
                     IQAAVGIVMMVFGKLYLSSLGYIFGSWEMVLGPFGYFLTLFAVWAAINAFNMVDGIDG
                     LLGGLSCVSFAAIGMILWFDGQTSLAIWCFAMIAAILPYIMLNLGILGRRYKVFMGDA
                     GSTLIGFTVIWILLETTQGKTHPISPVTALWIIAIPLMDMVAIMYRRLRKGMSPFSPD
                     RQHIHHLIMRAGFTSRQAFVLITLAAALLASIGVLAEYSHFVPEWVMLVLFLLAFFLY
                     GYCIKRAWKVARFIKRVKRRLRRNRGGSPNLTK"
     gene            complement(14927..16186)
                     /gene="rho"
                     /locus_tag="JN125_001771"
     CDS             complement(14927..16186)
                     /gene="rho"
                     /locus_tag="JN125_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HAY8871576.1"
                     /translation="MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAK
                     SGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR
                     PPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTAR
                     VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE
                     MQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNT
                     VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEE
                     FKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGE
                     IDAMEFLINKLAMTKTNDDFFEMMKRS"
     gene            complement(16271..16372)
                     /gene="rhoL"
                     /locus_tag="JN125_001772"
     CDS             complement(16271..16372)
                     /gene="rhoL"
                     /locus_tag="JN125_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rho operon leader peptide rhoL"
                     /protein_id="HAY8871577.1"
                     /translation="MRSEQISGSSLNPSCRFSSAYSPVTRQRKDMSR"
     gene            complement(16513..16842)
                     /gene="trxA"
                     /locus_tag="JN125_001773"
     CDS             complement(16513..16842)
                     /gene="trxA"
                     /locus_tag="JN125_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017375425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin TrxA"
                     /protein_id="HAY8871578.1"
                     /translation="MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILD
                     EIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE
                     FLDANLA"
     gene            16973..18238
                     /gene="rhlB"
                     /locus_tag="JN125_001774"
     CDS             16973..18238
                     /gene="rhlB"
                     /locus_tag="JN125_001774"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase RhlB"
                     /protein_id="HAY8871579.1"
                     /translation="MSKTHLTEQKFSDFALHPKVVEVLEKKGFHNCTPIQALALPLTL
                     AGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHA
                     DAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQ
                     VVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEY
                     IEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHL
                     AADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLP
                     DDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYNPDALMTD
                     LPKPLRLTRPRTGNGPRRTGAPRNRRRSG"
     gene            18372..19856
                     /gene="gppA"
                     /locus_tag="JN125_001775"
     CDS             18372..19856
                     /gene="gppA"
                     /locus_tag="JN125_001775"
                     /EC_number="3.6.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanosine-5'-triphosphate,3'-diphosphate
                     diphosphatase"
                     /protein_id="HAY8871580.1"
                     /translation="MGSTSSLYAAIDLGSNSFHMLVMREVAGSIQTLTRIKRKVRLAA
                     GLNSENALSNEAMERGWQCLRLFAERLQDIPPSQIRVVATATLRLAVNAGDFIAKAQE
                     ILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQTTSLFSL
                     SMGCVTWLERYFADRNLGQENFDAAEKAAREVLRPVADELRYHGWKVCVGASGTVQAL
                     QEIMMAQGMDERITLEKLQQLKQRAIHCGRLEELEIDGLTLERALVFPSGLAILIAIF
                     TELNIQCMTLAGGALREGLVYGMLHLAVEQDIRSRTLRNIQRRFMIDIDQAQRVAKVA
                     ANFFDQVEKEWHLEAISRDLLISACQLHEIGLSVDFKQAPQHAAYLVRNLDLPGFTPA
                     QKKLLATLLLNQTNPVDLSSLHQQNAVPPRVAEQLCRLLRLAIIFASRRRDDLVPEMT
                     LQANHELLTLTLPQGWLTQHPLGKEIIAQESQWQSYVHWPLEVH"
     gene            complement(19903..21924)
                     /gene="rep"
                     /locus_tag="JN125_001776"
     CDS             complement(19903..21924)
                     /gene="rep"
                     /locus_tag="JN125_001776"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase Rep"
                     /protein_id="HAY8871581.1"
                     /translation="MRLNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCG
                     YQARHIAAVTFTNKAAREMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMK
                     ANFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGER
                     DRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEEVRERWQNKIRYLLVDEYQD
                     TNTSQYELVKLLVGSRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPALKVIKLEQN
                     YRSSGRILKAANILIANNPHVFEKRLFSELGYGTELKVLSANNEEHEAERVTGELIAH
                     HFVNKTQYKYYAILYRGNHQSRVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRV
                     LTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGY
                     EALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSPKAAEMRMKNVNQL
                     FSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFP
                     YVYMVGMEEGFLPHQSSIDEDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRP
                     EPSRFLLELPQDDLIWEQERKVVSAEERMQKGQSHLANLKAMMAAKRGK"
BASE COUNT         5596 a         6111 c         5539 g         5032 t
ORIGIN      
        1 gtcacaactt ctaataatgg ggtggctaat gggattcgaa cccacgacaa ctggaatcac
       61 aatccagggc tctaccaact gagctatagc caccactaca aatcttgtta cgcggtatta
      121 ctaccaccgc agctcaagcg ccgggactaa atggcgcgcc cgacaggatt cgaacctgag
      181 acctctgcct ccggagggca gcgctctatc cagctgagct acgggcgctt agcgccgttg
      241 cgggggtgga taatacggac ttcccccccc tctgtctagt ccctttttaa ataaattgcg
      301 cgtttggtta cggtttgtgc gttttgctgc ttattcctcc agtttatgcg ctttcccgtg
      361 gcgattaagg ccaaaaactt tataaatcgc cgtcaccgcc agcataaaga tgatgccaac
      421 aaacagcgac atacgcgtat cttcattaaa gtacatgccg atcaaaacgc aaatcaggaa
      481 tgccattgtt acgtagttgg cccacgggaa caggattgag cggaacggat ggctggcaat
      541 cgccgcttta tgtgcacgcc gaaaacgcag ctggcttatc aatatcacaa accatggcac
      601 catccccgga agcacgctgg cactgtagac gtagacaaac acacgctgcg gattgggaat
      661 gatgtagttc aggcatgagc caattagcag aatagcaata gatactgcca cacccgcaac
      721 tggtacgccg tgacgggaaa ctttcgccat cgccgccggt aactgacggt ttttcgccag
      781 tgcgtagagc atacgtccgc aactgtacat gccgctgtta cagccagaga gcgcagccgt
      841 cagcaccaca aagttgataa tgcccgccgc tgcggtaata ccgattttgg caaaagtcag
      901 tacgaacggg ctgccgttgc tgccactttc attccacggg aagatggtga cgataacgaa
      961 aatcgcgcct acgtagaaaa tcaggatccg ccacagcact ttgcctacgg cactgcgcaa
     1021 cgtcacctgc ggattcttcg cttcaccggc agtaatgcca atcagctcca cgccctggta
     1081 ggacgccacc acaatacaca gcgcggtcag gaaccctttc cagccacccg caaagaaacc
     1141 gccatgctct gtgagattgc taaaaccaat cgactgcccg ccattgccaa agccaaagaa
     1201 aatcacgccc aggccaatga caatcatcac gataatcgtg gtgactttga tcatcgcgaa
     1261 ccagaactcg atttcgccgt acaaccgcac cgccgccaga ttcgccaacg ccaccagcgc
     1321 cactgcgatc aatgcgggta tccactgcgc catctccggg aaccagaact ggacataaac
     1381 gccaatggcg gtgatttctg agatccccac cgccatccac ataaaccaat aagaccaggc
     1441 ggtgagataa ccaaagaacg ggctcatata acgatgcgca taaacggcga acgaaccggt
     1501 aaccggttcg aggaacaaca tttcgcccat tgaacgcatg atgaaaaaga cgaatagccc
     1561 ggcgatgata taggccaaca atacggatgg cccggcccat ttcaaggtac tggcggcccc
     1621 cataaacagg ccgacgccaa tggtgccccc cagggcgatg agttcgatat gtcgagcttc
     1681 cagcccacgc tgtagctctg gtttgttatc tgccataaat cctcgtgttg tgtttgcatg
     1741 ctttccggtg ttaccggtta tcgttatggg tacatcgagt gttgcgaatg ttttcgtaat
     1801 tcaggagaaa tggcaaataa agcattaaaa atttgaatgc tttgtgtaat aaaaaagcag
     1861 acaggcgacg gagtgaccac tccgtcgctt tacaaagaga ggaaaatcag aggttgccgg
     1921 tgtagtgcca gcgtaaataa cgcagcaaac gaagctgacg cttaatgcgg ctcggctgcg
     1981 aaagcaggcg gtagagccac tccattccca gcgtttgcca gattttcggt gcgcgtttta
     2041 cgtgaccggt gaaaacatcg taagtcccgc caacgcccat atacagcgca tctggatgca
     2101 ccagacggca gtcgcgcatg aagatctcct gctttggcga tcccatcgca acggtgacga
     2161 tttgcgctcc gctggcatga atgcgttcaa acagcgcctg acgctgctcg ggtttaaaat
     2221 aaccatcctg actgccaacg atattcacat tccactggtt gcgcagttta gcttcagttt
     2281 gcgccagcac ttcaggttta ccgcccacaa gaaataccgg cgtcccttct ttgcctgcgc
     2341 gcgccatcag ctcttcccag agatcggcac cggcaacgcg ggaaacctgc gcctgcgggt
     2401 actttttacg tactgaacgt acaacgctga tgccatccgc atatttaaat tcggcagcgt
     2461 taattaactc cctaacctcg gcgttatctt caatggtcag cattttttca gcattaatgg
     2521 caaccagtgt tccctgctta agctgcccgt cagcaaacag ataatcgagg gcgtgctgca
     2581 tatcacgcca accaatcaac tgtaagccac gcagcgtata ggtcggtgcc gtggtgttgt
     2641 tattcattgt tatccttcaa cctgcgtccg gagcgatgat tttgtacgtt tatgaatgag
     2701 tccggcgctt tcaaaaagcc agtacaacag ttttgcgatc atcagacatg cgccgaagac
     2761 cacgataaaa aagactacgc gtgagacaaa cgaatccagc ccttcacgtg ccagcacgat
     2821 catattgaag atcgccccaa agcagaaact gtgcaatatc gcagccttat agcgattagg
     2881 ctcgcggttg cccagctcat acagccagtc gaaccatttg atgatcagac caaccacgat
     2941 cgccccgagc gggatgaaca acgcgccgcc catcaccacc agtgagccta taagcgtagg
     3001 cgagatcgcc agtccggagt ggttattcag cacttccctg gtaaagtagt tggctgagtt
     3061 cagcaccata ctcgggcgac ccggccacag ccaggaaggg ataaagacat agaaatcgcg
     3121 gacaattgga gccaggccct ggaagtcgat gttgtcgtag ttctgcaaca gcaacgccag
     3181 attctcccac ggcgagaagg tgtcgcgagt gagatagaga aacgtataga acgcttcatc
     3241 gccgctcaca ttcattccat agcgttttag cgccagccag aacatgccca caatccccag
     3301 cacgcccgcc gccgccagca tccacaacga aatccagccg cgaataatgc caataaacag
     3361 gaagatagcg aatgcgatga tgatattggc gcgagtgccg ccgacaatca tataagtcag
     3421 caagccaaag gcgaccgtgc tgacgaggaa aaacagccac gctttgctat cctggcgcag
     3481 aaagtagacc accagcatcg ccgggatgaa aaagtaaaag aagcgtttta acgccacgcc
     3541 ggagacttca ctggagaaga tctgactgta ggagttaagc cggaacagca aaaagccgtt
     3601 gtgcatgaag aagatgccga cgcttaccag cgcgatgccc atcaggatca cccacgtaag
     3661 attggtctcc acgcggttca tggtaaacag cggacggcgc ggtacatcag caacgcgttt
     3721 gcgtaggcgg gttttgtagg tgacatagta aaccgcgtag aagcagcccg cagaaagcaa
     3781 cgcctgcaac aagatttctg gcggcgcgac accaacatca aagcgaaata ccagcacgct
     3841 ggtcagcggg aagccgaaga aaaaggtgag caaaaacagc aatgaaaaga agacattgaa
     3901 gttaaagcgc acacggcgaa actcaaacca agtcagcgtg gcaataaaca gcgtgcagag
     3961 cagccagacc acaaacaggc cactgaattg cagcagactc atgcgacctc cccggcggca
     4021 atcgccaacg cccgctgcca gccttgtaga tagttagggc taaagaaggc aatggtgttt
     4081 ttatccaccg acgccaactg gcgctgcgct tcacgcacaa tatcctcgtt gagatcgtcg
     4141 gtagtaaaca gcaccggcaa atgctgttcc gtcatatcct gccagaacgg attttcccgg
     4201 ttaagcacac aaggaatgcc cgcctgaatc agtaagcaaa gcgtaccaat gccctgctgg
     4261 cgggcaaaaa taaagtaacc aagatcgcac tgacgaagta gcgccagata ggcgtcaaat
     4321 tccagttttt cgctcaaaat ttgcagattt tcttcgctga ataactccag ccccgcctga
     4381 cgaacttcct caatgtacgc ttcgttatta ggcggatatc ccatcggcac caccactttt
     4441 accgtatcgc caaattgctg atgaacggcg cgcaaggcag caatatggtc attgctgcgg
     4501 tcaccggagt tccccaccag aatggtcatt ttcccttcac gttgccgatc gttcgccatc
     4561 gtattgagag aagggtccat ccgcgtcggg aagtacagca gttcgccccg cacctttgga
     4621 tgcgttttgg caaaaaagct caaatcaccg cgggtggcaa atacacagcc gactcgcttt
     4681 tgcgccaggc gacgtagcgg gtaaaaaagc ttatatctca agccactgga aagctcatac
     4741 aggtctgccc cccagatatg ccagaaaaac tggctgggct taatgccacc actcagcaga
     4801 gccagccaca gtgtgggatt gaactgaccg tggaaaaaaa atcgctgctg acggttagct
     4861 tttgctttcg cgatgaccgc ttccgccagc gattttttcc cagggaaaaa ttgcacagaa
     4921 agcgccggac agctatcact taagccgtcg tccttgccaa caaccataaa ctcgcgcgcg
     4981 tgctcgctcg tcgcggccag cgcgtcattg aaaaaccgca aaacggttcg gttatggtga
     5041 gggatatccg atcccagtac gtgaatcagt acagtcatgc ccgcctacgc cagagtaaaa
     5101 acacgccaca acaaagagaa aaatagacga tataagttgc catatatgcc tgcgccgcgc
     5161 ccagtgcacc atgcgcaggg attagccagt gggcaaatac catcaataaa gtgaactggc
     5221 tgacttccgc cagaatataa aaccgcagtg acgctttggc gatcaccaga taaccaaaga
     5281 cataagcgcc cacttttaac acatcaccca ctaactgcca ggcaaagaga tcgcgcatag
     5341 cggtaaattt attcgacaac agcaaccaga tagcaaaatc acgcagcaac cagacggtaa
     5401 aactcgccgc cgccactgcc ggtaagacga attttagcga tttaaccact tcccgggtga
     5461 tatcgcgctt ttccgttagc cgcgacaacg tgggcagcaa atatacgctg aacgatgccg
     5521 taatgaattg caggtaggca tcggaaatac tgctcacccc ttgccagatc cccacttcat
     5581 cccagctata ctgcgccgcc agcagtttac gcatcatgat gtaagcaaca ggcaaggtca
     5641 ccgacgtaat caacgccatg agcgtaaatt tgctcaactg ccctgccaga ccgttatccc
     5701 agctgggttt cagatagctt aacgggatga caccacgttt gatcaacatg atggcggcag
     5761 gaattaccac cagcgcggga atcagcgcca gacccagcaa cgccccttca taaccgccca
     5821 aacggtaact gacgtagtac gcgagaacgc caatcaagct gccgacaatc agcgataacg
     5881 cattacctgc ggcatcgcga aagcctttca tcagcgccag taacaggttg ccccaggcga
     5941 tccccatttg caccagcgcc actaaacgca ccagcccctg atagtcggta ttaccaaaca
     6001 atccctggct gattggcgca gctgccagca caaaaaccag cgccatcagc gtagagaaac
     6061 caagtaccat cgctgatgaa gtgccgacca cgcggcgcag ctgttgcgga ttatcatggt
     6121 actgggcaac gtatttggtt acaccgttaa agatgccagc cccggcaagc acgccgagca
     6181 cggtaatcaa ctggcggaaa tttgccgcca gcccaagccc cgccggacca aatgacaccg
     6241 ccagcaactt accgaccagt aacccggcac caatcttgac cagtgtactg gccgccgtcc
     6301 acaaggacgc ttttgccaac gacatatcag gagaagtagt tcaacaaagt cgcaattacc
     6361 gtacgctgat tgacgggcga caggttgtag aacagcggca ggcgcagcag gcgctcgctc
     6421 tctttggtgg tgcagcgatc ttcaccgtgg aactcaccaa agtgttcccc cgcagggcaa
     6481 ccgtgcagcg gaatgtaatg aaacaccgcc atgatttccg cttctttcag aaagttaatc
     6541 aacgcgctcc ggtcatcaat atcccgcagt ttaatgtaga acatatgcgc gttctgcacg
     6601 cagccatcgg gaatcgacgg cagctcgata cgcccggctt tcgccagagg cgctaacgca
     6661 tcgtagtagt tttgccacag cgccagacgt tgctggttga tacgatccgc tgcttccagt
     6721 tgcgcccaca ggtatgcagc ttgcagatcg gacatcaaat agctggagcc aatatcgcgc
     6781 caggtatatt tatcgacctg accacggaag aactggctgc ggttagtgcc cttttcacgg
     6841 atgatctcgg ctcgttcgat taacgcttta tcgttaatca gcgtcgcgcc gccttcacca
     6901 cccgccgtgt agtttttggt ttcatggaag ctaaagcagc caatatgacc aatggttccc
     6961 agtgcacgcc ctttgtaagt ggacatcacg ccctgagcgg catcttccac cacaaacaaa
     7021 ttatgctttt tcgccaacgc cataatggtg tccatttcgc aggccacacc cgcgtaatgg
     7081 accggcacga taacgcgcgt tttgtcggtg atcgctgctt caatcaacgt ttcgtcgatg
     7141 ttcatggtgt ccgggcgaac atccacaaag acgattttcg cgccacgcag cacaaaggca
     7201 ttggcggtgg agacaaaggt gtagctcggc atgatcactt catcgccagg ctggatatcg
     7261 agcagcagcg ccgccatctc cagcgaagcg gtgcaggacg gcgtcagtaa cactttggcg
     7321 ctgccaaaac gttgctccag ccactgctgg cagcgacggg taaaaccgcc atcgccacac
     7381 agtttgccgc tacccattgc cgactgcata tagtcgagtt cggttcccac caccggcggt
     7441 gcgttaaatg gaatcatgtg atcacctgta taaccagtac gcggtgcttt ctacattcgc
     7501 accactttgt atgtatcgtt taagcgcggc ggtgttgccc atttgggtcg ccacccgcaa
     7561 agttgtttta ccgcgagcat acgcccagtt tagcgccgtt tgcatcagct cagcacctgc
     7621 accgcgtcca gccagcaggc caattcgcgc atctgtcgca ttgagttccc gtaaagagac
     7681 atagccgcga atatcgccgg acgccgcacg tagaatcaga cattgatgat caaaggtgcc
     7741 gcgcacggca ttttcaatcc actgtgcata aaagcgaccg ctggcgtcag gcgcatacca
     7801 cggcgcacga aaacggcttt gcgcaaatgc ggcgctagct aactgacgta atgcgggaat
     7861 atcggtctct tgtgccacga cagcaccgct atcactgaca ttgttcacgg gtagcgccaa
     7921 atcaacttca ccttctacca gggagaatcc cagctgttgc agggcatcca gttcacccgt
     7981 atttgatgcc acaattttgg cctgcacccg tgaccacggc gctaacgcgt ctggcgtcag
     8041 gagcggtgct tcagacgtaa tgcgcacgat ggcgctgtta acaccaaaga aggcgttttc
     8101 ccaggttagt ggctcaatac tggcgcggac gggcacgaag taactccagc agatattggc
     8161 catagccagt tttcgctaat gaactggcag cacgcttcac accctcgtca tcgagccagc
     8221 cgttacgcca ggcgatctct tccaggcagg caatcttaaa gccctggcgt ttttctactg
     8281 tctgcacaaa ggtactggct tcaatcaggc tgtcgtgagt gccagtgtcc agccaggcaa
     8341 atccgcgccc gagcagttca acggtcaggt tgcccgcctc gaggtacatc tggttgatgg
     8401 aggtaatctc cagttcacca cgctccgacg gcttcacctg ctttgcgtac tccacgactt
     8461 tactgtcgta gaaataaagc ccggtcaccg cccagtttga cttcggctgt tttggctttt
     8521 cttccagcga gatagcgcgg aaattgtcgt caaactccac cacgccaaag cgttccgggt
     8581 ccatcacctg atagccaaat accgtcgccc cttccgtgcg cgccgcaaca tgacgcagct
     8641 tcggactgaa gccctgaccg aagaagatgt tatcgcccag caccagacaa gaaggttcac
     8701 cgttgaggaa ggtttcaccg atgataaagg cctgcgccag accgtccggg ctgggctgtt
     8761 cggcgtattc cagctggata ccgaactcac taccatcgcc cagcaggcgc tggaaataac
     8821 ctttatcttc cggcgtagtg atgatgagaa tttcgcggat accggccaac atcagcaccg
     8881 acagcggata gtaaatcatt ggcttatcgt aaatcggcaa cagttgcttc gatacgccgc
     8941 gcgtaatcgg atgcaatcgg gtgccggaac cgcccgccag gataatacct ttcatgtttg
     9001 cctccgctga aaattagcct ttcagaccta aacgctcgcc ctgatagctg ccgtcctgca
     9061 cctacttcca ccagctttca ttagccagat accactgcac cgttttacgc attccacttt
     9121 caaaggtttc ctgtggcagc cagccaagtt cacgggcaat tttcgaagca tcaatggcat
     9181 aacgcagatc atgccccgga cggtcagcga caaaggtgat caagtcacga tagtgcacca
     9241 cgccgtgcgg cttgttcgga gccagttctt ccagcagctc gcaaatggtt tccacaacat
     9301 cgagattctt acgctcgttg tgaccaccaa tattataggt ttcaccgact ttcccggtgg
     9361 tcgccacgca atacagcgcg cgggcgtgat cttccacata cagccagtca cggatttgct
     9421 gcccgttgcc atataccggc agcggtttac ccgccagcgc gttgaggatc atcagcggga
     9481 tcagtttttc cggaaagtgg taaggaccgt agttattcga gcagttggtg ataagcgtcg
     9541 gcagaccgta ggtccgcagc caggcgcgca ccagatggtc gctgctggct tttgacgcgg
     9601 aataagggct gctcggcgca tacggcgtgg tttcggtgaa gaaatcatcc gtcgagtgca
     9661 ggtcaccata tacttcgtcg gtggagatat gatgaaaacg gaacgctgat tttttatctt
     9721 ccgtcagcgt attccagtaa gcccgcgccg cttcaagcaa tgtataagtc ccgacaatgt
     9781 tggtttcaat aaacgctgcc gggccgtcaa tagaacggtc aacatggctt tcggctgcca
     9841 gatgcatgac acagtctggc tgatgctcag tgaatacgcg tgccagttct gcccgatcgc
     9901 agatatcaac tttctcaaag gcaaagcgat cgctttgcgc gaccggtgcc agcgacatca
     9961 ggtttccggc gtaggtcagc ttatcgacca ctaccaccgc gtcgctcgtt tcgttgatga
    10021 tataacgcac cagcgccgag ccaataaacc cggcaccacc tgttatcaga atttttctca
    10081 tcagcgccag actcctttgg catcgacgac atactgctga tggacattgt cgccattgat
    10141 aactttaaac tgactatgat cgaccagcat caccagcacg tctgccgttg ccagcgcctc
    10201 gtcaagctgc gccagagtac aaagcccggt cagttttttc ggcaactggt ggatgttagg
    10261 ctcaacaacc agagtttcgc cgctatgcca ctgggcaatc agttcagcga tttccatcgc
    10321 cgggctttcg cgcaggtcat caatattcgg tttaaacgcc agaccaaagc aggcgatttt
    10381 cagttcactg gcgcgtttat cggtagccgc caggcaatca gccaccgccg ctttcacctg
    10441 atcgataacc cagaacggtt tgtgatcgtt cacttcgcgc gcggtacgga taagccgcgc
    10501 ctgctggggg ttctgtgcca cgataaacca cggatcaaca gcaatgcagt gaccgcccac
    10561 gccagggcca ggctgaagaa tattaacgcg agggtgacga ttcgccaggc gaatcagttc
    10621 ccagacgtta atcccctgat cggcacaaat cagcgacaat tcattagcaa aagcgatatt
    10681 cacatcgcgg aagctgtttt cggtgagctt acacatttcc gccgtccgcg agttagtgac
    10741 gacacactca ccttcgagga aaattttgta cagttcgctg gcgcgggtcg aacaaaccgg
    10801 cgtcatacca ccaatcacgc gatcgttttt aatcagctcg accataacct ggcccggtaa
    10861 cacgcgttcc gggcagtaag caatgttgac gtccgcctgc tcgcccacct gctgtgggaa
    10921 agtgagatcc ggacgcatct ctgctaacca ttctgccatc ttctcggttg accccaccgg
    10981 cgaggtggat tcaaggatca ccagcgcgcc ttttttcagc actggcgcaa tggagcgagc
    11041 agccgattca acgtaggtca tatctggctc atgatcgcct ttaaacggcg tgggtacagc
    11101 aatcagccag gcatccgctt caactggcgt cgtgctcgct cgtaaaaaac cgccttctac
    11161 ggcagttttt actacgctcg ccaaatcagg ctcgacgata tggatttcgc cacgattgat
    11221 ggtatcaacc gcgtattggt tgatatcgac accaatcacc tgtttttgcc gtgaggcaaa
    11281 cgctgctgct gtaggcagcc cgatgtaacc cagtccgata acagaaatgg tcgcaaaact
    11341 catagtgata tccgattatt ttttaacgct tccagaatgc gagagcatgc ctgaccatca
    11401 ccatacgggt tatgggcgcg gctcatagtt tgatattcgt tttcgtcttt taaaagacgc
    11461 gtcacttcct cgacaattcg ctgcttatcc gtgcctacca gacgcaccgt acccgccgtc
    11521 accgcttccg gacgctcagt ggtatcgcgc atcaccagca ccggtttccc cagcgaaggc
    11581 gcttcttcct gaatgccgcc tgagtcggtc aaaatcagcc aggcgtggtt catcaaccag
    11641 acaaacggta aatactcctg gggatcgatc agaatgacat ttttcacatg ccccagaatg
    11701 cgattgaccg gctctctgac gttcgggttg agatgcaccg gatagacaat ctggatgtcc
    11761 tggtgcgtgg tggcaatgtc tgccaacgcg tggcagattt cttcaaaacc acgaccgaaa
    11821 ctctcacgcc tgtgaccggt caccagaatc atctttttat cggggtcgat aaacgggtaa
    11881 tttgccgcca gttctgaacg cagcgtgtcg ctgctcatca cctgatcacg cacccataac
    11941 agtgcatcaa tgactgtatt accagtaatg aagattcggc tatccgcaac gttttcacgc
    12001 agcaagtttt gccgggaagt ttcggttgga gagaagtgat acatcgccag atgcccggtc
    12061 aatgtacggt tagcctcttc cggccacggc gaatagagat cgcccgtgcg taaaccagcc
    12121 tcaacgtgac caacaggaat acgctgataa aacgccgcca ggctggttgc cagcgtcgtt
    12181 gttgtgtcgc cgtgaaccag cacgacgtct ggtttgaact cggcaagaat aggttttagc
    12241 ccttccagaa tccgacaggt tatctctgtc aggccctgtc ctggctgcat tatgttgaga
    12301 tcgtagtcag gtacaatgga aaagagtttc agcacctgat cgagcatctc ccgatgctgc
    12361 gcagtgacgc aaactttagc ctcaaaaaaa ggagcttttg ccaacgcatg caccaacgga
    12421 gccatcttga tggcttccgg gcgcgtacca aatacagtca gtactttcac atcgattctc
    12481 ttcgaataag cggcgagcgc ctttgcgctc gccgcagcag tgttgctatt tcgagcaacg
    12541 gcgggttaat gcgacaccag ccccgatcag ccccccgaca atgccccaca taatcatcag
    12601 gaaggcacga cgtgggctat cgcgttttac cggttcttcc ggcgtacgca aatagcgata
    12661 ggtctgaaaa cgcggatcca gggttggacc aacattcagg gtgtttaaca tggcccgatt
    12721 ctgatcatag tcgagatcaa aggccggacc gacggcctgt aaattttcca gtcgagcctg
    12781 gagcattgga cgcccaagca ggaacatttc tgaatcaggt aattcctcgg caggcacatc
    12841 tgtcgcactg cgcgaaatat tatgctgctc agcaattttc agcgcctgct caatgctgtt
    12901 catccggcgg tcgtagatgg ctttcgccac ctcttcctga cgcttcacct gagctttcat
    12961 ctggatggtg cgtgccgccc atgcgccttt cagctcatca ttcagatggc tggctgcacg
    13021 ctggctggca aaagcaacat actgacgtaa caggttatta gcgtcaggcg cggtttcggc
    13081 aataagcttc acgctgtcat tgaccgcgcg ggtaaagtct ccggggataa actggatgtt
    13141 gttaatcatt tcatccagca acgccgcatc ggctttgctg ttgcccacca tccgctgttt
    13201 gtaatagtcg gtttgcagcc agaactctct gcgggtatcc cacgaggcca gttgcataac
    13261 aaactcttta taggcttcgt ccatgaccga tggttgatcg gcagaagcca tgtttgaacg
    13321 gacatccagg ttacgcaaaa attgctgctg cgagtaatat ccccccagca tattcaccgt
    13381 tggacgatcg gtaatcgccg tcgagctcca ctcctgacga gcaaaaaaag tatacgccag
    13441 cgcgattaac gcaaacgcca gccccatgcc aataatccat agcttcccag cccacaaggt
    13501 acgaaacaac ccacgaatat ccagttcatt ttcagcgtct tcggccggtt tcccaggcat
    13561 tggttgtgtc atcacatcct catttatttg gttaaattgg ggctgccacc acgatttcta
    13621 cgcagtctgc gttttacgcg cttaataaag cgagcaactt tccaggcacg cttaatgcaa
    13681 tatccataga ggaagaatgc tagcaaaaag agcaccagca tgacccactc cgggacaaaa
    13741 tgagaatatt ctgccagcac gccaatggaa gcgagcagtg ctgcggcaag ggtaatcagc
    13801 acaaacgcct gacgggaagt aaacccggca cgcatgatca aatggtgaat atgctgacgg
    13861 tcaggagaga atgggctcat gcctttacgc aggcgacggt acataatcgc caccatatcc
    13921 attagcggaa tggcgattat ccacaaagcg gtaaccgggc tgatgggatg ggttttgccc
    13981 tgggtcgttt cgagcaggat ccagataacg gtaaaaccaa tcagcgtact gcccgcatca
    14041 cccataaaga ctttgtagcg gcgacccagg ataccaaggt taagcatgat gtatggcagg
    14101 atggcggcga tcatcgcaaa gcaccagatt gcgaggctgg tttgcccgtc gaaccacaaa
    14161 atcataccga ttgctgcaaa cgagacgcag gacaacccgc ccagcaagcc atcaatgcca
    14221 tcaaccatgt tgaacgcatt aatggccgcc cagacggcaa atagcgtcag gaagtaacca
    14281 aacggtccga gcaccatctc ccaggagcca aagatataac ccaggctact gagataaagt
    14341 ttgccgaaca ccatcataac aatgccaaca gcggcctgta tggtggcacg gatttttacg
    14401 ctgatatcaa aacggtcatc cagcgcgcca atgaaaacaa gcacaccggc acaagcgaga
    14461 tagagagatg catgcggaat atagtaatcg acaattccga acgtgaagca aatccctgcg
    14521 taaaccgaaa tccccccaac gagaggtatc aatccctggt gacgtttgcg gaagtttggt
    14581 ttatccacta aaccgacttt ttttgccacc ttacgggcaa aaaacagaaa cagtgtcgtg
    14641 aataaaaaaa tactgatgag atcagtactc actgtcagta aattcacaat gcatgctctc
    14701 agagaaaatt attagcagaa gtataaccac gaagaccttt attcagaagg gaaagtccgt
    14761 tccgaaccca ccagccctgt gcaaaaatta accatttgat atgcaaattg cataacatgc
    14821 cagcaaattc caggaatttt cctaacatcg ccagcgcggc attaagatta cagatataaa
    14881 agcaaaacgc cacgtaaaca cgtggcgttt ttggcataag acaaatttat gagcgtttca
    14941 tcatttcgaa gaaatcgtca ttggtcttgg tcatggccag tttattaatg aggaattcca
    15001 ttgcatcgat ttcgcccatc gggtgaatga ttttgcgcag gatccacatt ttctgcagtt
    15061 cttcctgagt cgtgagcagc tcttctttac gggtaccgga acggttgtag tcgatagccg
    15121 ggaagacgcg tttttcagcg atcttacgag agaggtgcag ttccatgttg cctgtacctt
    15181 taaactcttc gtaaataact tcgtccattt tagaaccggt atcgataagc gccgtcgcga
    15241 taatggtcag gctgccgccc tcttccacgt tacgcgccgc accgaagaag cgtttcggac
    15301 gatgaagggc attggcgtcc acaccaccgg tcaacacttt acctgacgcc ggaacaacag
    15361 tgttgtaagc gcgcgccaga cgagtgatgg agtcgagcag aatgataacg tctttcttgt
    15421 gctcaaccag gcgtttggcc ttctcgatca ccatttccgc aacctgaacg tggcgagatg
    15481 cgggttcgtc aaaggtagaa gcaacaactt caccttttac cagacgctgc atctcggtta
    15541 cttcttccgg acgttcgtcg atcagcagaa ccatcagcac acaatccggg tggttgtaag
    15601 caatgctctg agcaatgttc tgcagcagca tagttttacc ggctttcggc ggtgccacaa
    15661 tcagaccacg ctgaccacga ccgataggtg atgccagatc cagtacgcga gcggttaaat
    15721 cttccgtaga accgttacca cgttccatac gcagacgaga gtttgcgtgc agcggggtta
    15781 agttctcaaa gaggattttg ttgcgggcgt tttcaggttt gtcgaagtta acttcgttaa
    15841 ctttcagcag cgcaaaatag cgttcacctt ctttcggcgg gcgaatctta ccagagatgg
    15901 tatcaccagt gcggaggttg aaacggcgga tttggctagg ggaaacgtag atgtcatcag
    15961 gaccggcgag gtaggagctg tctgcggaac ggaggaaacc aaatccatcc tgcaatatct
    16021 ccagtacgcc atcaccaaag atatcttcgc cactctttgc gtgctgcttc aggatggcaa
    16081 aaataatgtc ctgcttacgc atacgagcca ggttttccag ccccatattt tcgccgagag
    16141 tgatcagctc agaaaccggc gtattcttta attcggtaag attcatagtg gtgtgagttc
    16201 ttaaacttgg ggtaaatctc gaacttaatg ttgtgaatgg tatggcagga tcatccatgc
    16261 ctgtttacgg tcatcgactc atgtcttttc gctgcctggt cacaggagag tacgcagaac
    16321 tgaaacgaca agacggattg agtgacgagc cagaaatctg ttcacttcgc atttaagata
    16381 aaacgggaag cgttggaaat tacaagattc aaacttaata aggtatgttt aatacgaagt
    16441 caacactaag ttagcatgac tcacgccggg cgtccagttt ttagcgacgg ggcacccgaa
    16501 catgaaattc ccttacgcca ggttagcgtc gaggaactct ttcaactgac ctttagacag
    16561 tgcacccact ttggttgccg ccacttcacc gtttttgaac agcagcagag tcgggatacc
    16621 acggatgcca tatttcggcg cagtgccagg gttttgatcg atgttcagtt ttgcaacggt
    16681 cagtttgccc tgatattcgt cagcgatttc atccagaatc ggggcgatca ttttgcacgg
    16741 accgcaccac tctgcccaga aatcgacgag gatcgccccg tccgctttga gtacatccgt
    16801 gtcaaaactg tcgtcagtca ggtgaataat tttatcgctc atatataact ccacaggaat
    16861 aagcctggcg tgttggtttc gttgttggtg taacattaac caactaaagg ttgactttat
    16921 ttcaccggat acgctttcgt aaagcaatag taagctgata ttctaccaca ctatgagcaa
    16981 aacacattta acagaacaga agttttccga cttcgccctg catccgaagg ttgtagaagt
    17041 ccttgaaaaa aaagggtttc ataactgtac gcccattcag gcactggccc ttccgctgac
    17101 gctggcgggt cgtgacgtag ccgggcaggc gcaaaccggt accgggaaaa cgatggcgtt
    17161 tcttacgtca acgtttcatt atcttctctc tcatcctgcg attgccgatc gcaaggtgaa
    17221 tcaaccacgt gccttaatta tggcaccgac gcgtgaactt gccgtgcaga tccatgccga
    17281 cgcagaaccg ctggcggaag ctaccggcct gaagctgggt ctggcttacg gtggtgatgg
    17341 ctacgacaaa cagctgaaag tgctggaaag cggcgttgac attctgattg gcactacggg
    17401 gcgtttaatt gactacgcca agcagaacca cattaacctc ggtgccattc aggtggtggt
    17461 actggacgaa gccgatcgca tgtacgatct gggctttatt aaagatatcc gctggctgtt
    17521 ccgccgtatg ccgcctgcaa accagcgcct caacatgctg ttctccgcca cgctttcgta
    17581 ccgggtacgt gaactggcgt tcgagcagat gaacaatgcc gaatatattg aagtggaacc
    17641 ggaacagaaa acgggccacc gtattaaaga agagcttttc tacccttcta acgaagaaaa
    17701 aatgcgtttg ctgcaaacgc tgatcgaaga agagtggcca gacagagcga ttattttcgc
    17761 caataccaaa caccgttgtg aagagatctg gggccacctg gcggcagatg gtcatcgtgt
    17821 cggtttgttg acaggcgatg tcgcgcagaa aaaacgtctg cgtattcttg atgaatttac
    17881 ccgtggcgat ctggatattc tggttgccac cgacgttgcc gcgcgtggtt tgcatattcc
    17941 ggcagtgacg cacgtcttta actacgattt acccgatgac tgtgaagatt acgttcaccg
    18001 tattggtcgt acaggtcgcg caggcgcaag cggtcactct atcagcctgg cgtgtgaaga
    18061 gtatgcattg aatttgcctg ctattgagac ctatattggt cactcaattc cggtaagcaa
    18121 atacaatccg gacgcattga tgaccgatct gccaaaaccg ctgcgcctca cgcgcccacg
    18181 tacaggcaat ggtccgcgtc gtactggcgc tccgcgtaat cgtcgtcgtt caggttaaat
    18241 aaaatgtcat actcaaaatc attcaaactg tatcaagatg gcaagagaat gaatcccgat
    18301 gagcatactg tagtaagtga ttcaggtgaa agaatgcagc caacacagag acagattgaa
    18361 ggatgaagag tatgggttcc acctcgtcgc tgtatgcagc cattgatctc ggttcgaata
    18421 gttttcatat gctggttatg cgcgaggtgg ctggaagcat ccagacgctg acgcgaataa
    18481 aacgcaaagt gcgtctggct gctggcctga atagcgaaaa tgccctgtct aatgaagcaa
    18541 tggagcgcgg ttggcaatgt ctgcgcctgt ttgctgaacg tctgcaagat atccctccct
    18601 cgcaaattcg cgttgtcgct acggcgacat tacgtcttgc cgtcaatgcg ggtgatttta
    18661 ttgccaaagc gcaggaaatc ctcggttgtc cggtacaggt gatcagcggt gaagaggaag
    18721 cacgtctgat ttatcagggc gttgctcaca caactggcgg tgccgatcag cgcctggtgg
    18781 tggatatagg cggtgccagt actgaactgg taaccggcac gggtgcacaa accacctcgt
    18841 tgttcagcct gtcgatgggc tgcgtcacct ggctggaacg ctattttgcc gatcgtaatc
    18901 tggggcagga aaattttgat gctgcagaaa aagcggcacg cgaagtgtta cgtccggttg
    18961 ccgatgaatt acggtatcac ggctggaaag tgtgcgttgg tgcttccggc accgtgcagg
    19021 cgttacagga aatcatgatg gcacagggga tggatgaacg cattaccctg gaaaagttgc
    19081 agcaattgaa acagcgagcc attcattgcg gtcggctgga ggaactggag attgacgggc
    19141 tgacgctgga acgtgcgtta gtgttcccga gtggtctggc gatcctgatc gccattttta
    19201 ccgaactgaa tattcagtgt atgaccctgg cgggcggtgc gctgcgtgaa ggcctggtct
    19261 acggcatgtt gcatctggcc gtcgagcagg atattcgcag ccgtacgctg cgtaatattc
    19321 agcgccgctt tatgatcgat attgatcagg cgcagcgcgt agccaaagtt gcggctaact
    19381 tcttcgatca ggtggaaaag gaatggcatc ttgaagcaat aagccgcgat ttgctcatca
    19441 gcgcctgtca gcttcatgaa atcggcctga gcgttgactt taaacaagcg ccgcaacacg
    19501 ctgcttatct ggtgcgtaat ctggatcttc ccggttttac ccccgcacag aaaaaattgc
    19561 tggcgacgct actgctcaac cagactaatc cggtcgatct ctcatcgctg catcagcaaa
    19621 atgccgtacc gccgcgcgtc gcagaacaac tctgccgttt actccgcctg gccatcattt
    19681 ttgccagccg tcgccgtgac gatctcgtgc cagagatgac attacaggct aaccatgaac
    19741 tgttgacctt gacgcttccg caaggttggc taacccaaca tccgctgggt aaagagatta
    19801 ttgctcagga aagccagtgg cagagctatg tccactggcc gctggaagtg cattaatgag
    19861 taagtgccgg atgcgatgct gacgcatctt ttccggcctt gattatttcc ctcgttttgc
    19921 cgccatcatc gctttcagat tcgccagatg gctttgccct ttctgcatcc gttcttcggc
    19981 gctgaccact ttgcgctcct gttcccaaat cagatcatcc tgcggcagct ccagcaaaaa
    20041 gcggctcggc tccgggcgca ccagctcgcc gtactgacgg cgttctttac acagcgtaaa
    20101 ggtcaattcc ttctgggcgc gggtaatgcc gacataggcc agccgccgct cctcatcgat
    20161 attatcttca tcgatgctac tctggtgcgg caaaaaccct tcttccatac cgaccatgta
    20221 gacataagga aactccagcc cttttgacgc gtgcagagtc atcagttgca cctgatccag
    20281 ctcttcttca ctctcaccac gctccatcat gtcgcgcaaa gtaaagcgcg tcaccacctg
    20341 ggtgagcgtc atcggctcat ccagttcgct gccttccagc atctccgtca tccagctaaa
    20401 cagttggttg acgttcttca tgcgcatttc ggcggctttc gggctgggcg atgtttcgta
    20461 cagccaggat tcataatcca tgccgtggat cagatcgcgc accgcggcaa tcggctcccg
    20521 ctccgccaga cgctggattt ctgccaacca gtgagtaaag cgggtcaatg cttcataacc
    20581 acgtccgcta agcgtctgac tcaggcccat atcaaagctg gcggtaaaca tgcttttatt
    20641 gcgcgtcatc gcccactcac ccagcttttt cagcgtcgcc gggccaatct ctctcttcgg
    20701 cgtgttaacg atacgcagaa atgcgctgtc atcgtccggg ttagtcagca cgcgcagata
    20761 agccagcaag tccttgattt caggacgaga gaaaaacgac gtaccaccag aaattttgta
    20821 cgggatgcgg ttttgcatca ggaatttttc aaacactcgc gactgatggt taccgcgata
    20881 aagaatagcg taatatttgt actgcgtttt attgacgaag tgatgcgcaa tcagttcacc
    20941 agtgacgcgc tcggcttcat gttcttcgtt attcgcgctt aaaactttaa gctctgtgcc
    21001 gtaacccagt tcggagaaca gacgcttctc aaagacgtgc gggttattgg cgatcaggat
    21061 gttcgccgct ttcaaaatac gtccggaaga gcggtagttc tgctcaagct taatcacctt
    21121 cagcgccgga aaatcctgac tcagcagcac caggttttgt ggacgtgcgc cgcgccagga
    21181 gtagatcgac tggtcgtcat cgcccaccac ggtaaagcgc gcgcggctgc ccaccagcag
    21241 tttcaccagt tcatactggc tggtgttggt gtcctgatac tcatccacca gcagatagcg
    21301 aattttgttc tgccagcgct cgcggacttc ttcattgcgt tgcagcagca acgtcggcaa
    21361 taaaatcaga tcatcgaagt cgagaacatt gcacgctttc aggtgtgcat catacagccc
    21421 ataacaatgg gcaaaaatac ggtcccgctc gccaatcgca ctggctgccg cctgggacgg
    21481 tgttttgaga tcgttcttcc agttagagat agtcgaaatc aactgttgca ggagaacttt
    21541 gtcatcttca atcagccctt cggtcaactc tttgagcaac gccagctgat cggtatcgtc
    21601 aaacagcgaa aagttcgcct tcatccccag cgccgcatac tcacgcttga tgatatccag
    21661 ccccagcgtg tggaaggttg agatcatcag cccacgcgcc tctttgcgac ccagcgtctg
    21721 tccgacacgc tctttcatct cgcgcgccgc cttattggta aaggtcaccg ccgcgatatg
    21781 tcgcgcctga taaccgcaac cgcggatcag atgggcgatt ttattggtga tcacacgagt
    21841 tttaccggaa cccgcgcccg ccagcaccag gcaggggccg gtaacgaatt cgacagcttg
    21901 ttgttggccg gggtttagac gcataggtgt attgctcaat cttcgaacgg ggggaggatt
    21961 gtagcagaat cgcatttgaa tgtgaccgcg tgtaagccgc taaccggttg gctgcggatg
    22021 tttaaatcag agagggaaga ccgaaaccgg agttcatcgt gaatccatta gacttagaaa
    22081 atatcgggtc gtaacgttgt gttattactt tttcagagtt tactaaggag aggtgtactc
    22141 gtggcgatta atttcagtcc taaggttggt gaaatactgg aatgcaactt tggtaactat
    22201 cctgttagcc agaatggaca gttcagcacc acgtattacg atggccgcat tcctcctgaa
    22261 atgataaaaa acaggtta
//
LOCUS       DADMHM010000054        22134 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.055, whole genome shotgun sequence.
ACCESSION   DADMHM010000054 DADMHM010000000
VERSION     DADMHM010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 22134)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22134)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22134
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.055"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            237..1241
                     /locus_tag="JN125_001777"
     CDS             237..1241
                     /locus_tag="JN125_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708899.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus assembly protein CblD"
                     /protein_id="HAY8871582.1"
                     /translation="MTYDLASGRADYYFWKDEASAGNNGYMWYECSYPDLQQTCTANG
                     NISTVQIYLTEQRSGMRWPVKLKGFKTAIVSSDEAPPGCKGGKGLQTNLKDSNRSSCT
                     EDGQHYYIYDTKFLTLYLEQTEMKNLPIGGVWKGKVKLHSNSPAQDYFANITLNTLDP
                     NHIDVFFPEFAHATPRVQLDLHPTGSVNGSNYAQDLTMLDMCLYDGFNGNAISYEIML
                     KDEGRPAAGRRDGDFSIYRQGGTSTDEGERIDYRVKMYNPETGGQIDVRNNENMVWNS
                     INLKSVRPVVLPGIRYAVMCVPTPLTLAVDKFSVMDKQAGYYMGKLSVIFTPSLPTIN
                     "
     gene            complement(1329..2627)
                     /locus_tag="JN125_001778"
     CDS             complement(1329..2627)
                     /locus_tag="JN125_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708898.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8871583.1"
                     /translation="MRKIKGLRWYMIALVTLGTVLGYLTRNTVAAAEPTLMEELNIST
                     QQYSYIIAAYSAAYTVMQPVAGYVLDVLGTKIGYAMFAVLWAVFCGATALAGSRGGLA
                     IARGAVGAAEAAMIPAGLKASSEWFPAKERSIAVGYFNVGSSIGAMIAPPLVVWAIVM
                     HSWQMAFIISGALSFIWAMAWLIFYKHPRDQKHLTDEERDYIINGQEAQHQVSTAKKM
                     SVGQILRNRQFWGIALPRFLAEPAWGTFNAWIPLFMFKVYGFNLKEIAMFAWMPMLFA
                     DLGCILGGYLPPLFQRWFGVNLIVSRKMVVTLGAVLMIGPGMIGLFTNPYVAIMLLCI
                     GGFAHQALSGALITLSSDVFGRNEVATANGLTGMSAWLASTLFSLVVGALADTIGFSP
                     LFAVLAVFDLLGALVIWTVLQNKPAIEVAQESHNDPAPQH"
     gene            3110..4522
                     /gene="uxaC"
                     /locus_tag="JN125_001779"
     CDS             3110..4522
                     /gene="uxaC"
                     /locus_tag="JN125_001779"
                     /EC_number="5.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019077755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucuronate isomerase"
                     /protein_id="HAY8871584.1"
                     /translation="MTPFMTEDFLLDTEFARRLYHDYAKDQPIFDYHCHLPPQQIAED
                     YRFKNLYDIWLKGDHYKWRAMRTNGVAERLCTGDASDREKFDAWAATVPHTIGNPLYH
                     WTHLELRRPFGITGKLLSPSTADEIWNECNELLAQDNFSARGIMQQMNVKMVGTTDDP
                     IDSLEHHAEIAKDGSFTIKVLPSWRPDKAFNIEQATFNDYMAKLGEVSDTDIRRFADL
                     QTGLTKRLDHFAAHGCKVSDHALDVVMFAEANEAELDSILARRLAGETLSEHEVAQFK
                     TAVLVFLGAEYARRGWVQQYHIGALRNNNLRQFKLLGPDVGFDSINDRPMAEELSKLL
                     SKQNEENLLPKTILYCLNPRDNEVLGTMIGNFQGEGMPGKMQFGSGWWFNDQKDGMER
                     QMTQLAQLGLLSRFVGMLTDSRSFLSYTRHEYFRRILCQMIGRWVEAGEAPADINLLG
                     EMVKNICFNNARDYFAIELN"
     gene            4537..6024
                     /locus_tag="JN125_001780"
     CDS             4537..6024
                     /locus_tag="JN125_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="altronate dehydratase"
                     /protein_id="HAY8871585.1"
                     /translation="MQYIKIHALDNVAVALADLAEGTEVSVDNQTVTLRQDVARGHKF
                     ALTDIAKGANVIKYGLPIGYALADIAAGEHVHAHNTRTNLSDLDQYRYQPDFQDLPAQ
                     AADREVQIYRRANGDVGVRNELWILPTVGCVNGIARQIQNRFLKETNNAEGTDGVFLF
                     SHTYGCSQLGDDHINTRTMLQNMVRHPNAGAVLVIGLGCENNQVAAFRETLGDIDPER
                     VHFMICQQQDDEIEAGIEHLHQLYNVMRNDKREPGKLSELKFGLECGGSDGLSGITAN
                     PMLGRFSDYVIANGGTTVLTEVPEMFGAEQLLMDHCRDEATFEKLVTMVNDFKQYFIA
                     HDQPIYENPSPGNKAGGITTLEDKSLGCTQKAGSSVVVDVLRYGERLKTPGLNLLSAP
                     GNDAVATSALAGAGCHMVLFSTGRGTPYGGFVPTVKIATNSELAAKKKHWLDFDAGQL
                     IHGKAMPQLLEEFIDTIVEFANGKQTCNERNDFRELAIFKSGVTL"
     gene            6107..6658
                     /locus_tag="JN125_001781"
     CDS             6107..6658
                     /locus_tag="JN125_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgjV family protein"
                     /protein_id="HAY8871586.1"
                     /translation="MTAYWLAQGVGFIAFLIGITTFFNRDERRFKKQLSVYSAVIGVH
                     FFLLGTYPAGASAILNAIRTLITLRTRSLWVMAIFIVLTGGIGLAKFHHPVELLPVIG
                     TIVSTRALFRCKGLTMRCVMWFSTCCWVIHNFWAGSIGGTMIEGSFLLMNGLNIIRFW
                     RMQKRGIDPFKVEKTPPAVDERG"
     gene            complement(6663..7907)
                     /gene="sstT"
                     /locus_tag="JN125_001782"
     CDS             complement(6663..7907)
                     /gene="sstT"
                     /locus_tag="JN125_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HAY8871587.1"
                     /translation="MTTQRSPGLFRRLAHGSLVKQILVGLVLGILLAWISKPAAEAVG
                     LLGTLFVGALKAVAPILVLMLVMASIANHQHGQKTNIRPILFLYLLGTFSAALAAVVF
                     SFAFPSTLHLSSSAGDISPPSGIVEVMRGLVMSMVSNPIDALLKGNYIGILVWAIGLG
                     FALRHGNETTKNLVNDLSNAVTFMVKLVIRFAPIGIFGLVSSTLATTGFSTLWGYAQL
                     LVVLVGCMLLVALVVNPLLVWWKIRRNPFPLVLLCLRESGVYAFFTRSSAANIPVNMA
                     LCEKLNLDRDTYSVSIPLGATINMAGAAITITVLTLAAVNTLGIPVDLPTALLLSVVA
                     SLCACGASGVAGGSLLLIPLACNMFGISNDIAMQVVAVGFIIGVLQDSCETALNSSTD
                     VLFTAAACQAEDDRLANSALRN"
     gene            complement(8523..9488)
                     /gene="alx"
                     /locus_tag="JN125_001783"
     CDS             complement(8523..9488)
                     /gene="alx"
                     /locus_tag="JN125_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001098790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family membrane protein Alx"
                     /protein_id="HAY8871588.1"
                     /translation="MNTVGTPLLWGGFAVVVAIMLAIDLLLQGRRGAHAMTMKQAAAW
                     SLVWVTLSLLFNAAFWWYLVQTEGRAVADPQALAFLTGYLIEKSLAVDNVFVWLMLFS
                     YFSVPAALQRRVLVYGVLGAIVLRTIMIFTGSWLISQFDWILYIFGAFLLFTGVKMAL
                     AHEDESGIGNKPLVRWLRGHLRMTDTIDNEHFFVRKNGLLYATPLMLVLILVELSDVI
                     FAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAERFSMLKYGLAVILVFI
                     GIKMLIVDFYHIPIAVSLGVVFGILVMTFIINAWVNYRHDKQRGE"
     gene            complement(9772..10776)
                     /locus_tag="JN125_001784"
     CDS             complement(9772..10776)
                     /locus_tag="JN125_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HAY8871589.1"
                     /translation="MEYPRVMIRFAVIGTNWITRQFVEAAHESGKYKLTAVYSRSLEQ
                     AQHFANDFSVEHLFTSLEAMAESDAIDAVYIASPNALHFSQTQLFLSHKIHVICEKPL
                     ASNLAEVDAAIACARENQVVLFEAFKTASLPNFHLLRQALPKVGKLRKVFFNYCQYSS
                     RYQRYLDGENPNTFNPAFSNGSIMDIGFYCLASAVALFGEPKSVQATASLLASGVDAH
                     GVVVMDYGDFSVTLLHSKVSDSVLESEIQGEAGSLVIEKLSECQKVCFVPRGSQMQDL
                     TQPQHINTMLYEAELFATLVDEHLVDHPGLAVSRITAKLLTEIRRQTGVIFPADSVKL
                     "
     gene            complement(10837..11520)
                     /locus_tag="JN125_001785"
     CDS             complement(10837..11520)
                     /locus_tag="JN125_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001183047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vancomycin high temperature exclusion protein"
                     /protein_id="HAY8871590.1"
                     /translation="MQPRLLLRICFSRRTLKIACLLLLVAGATIFIADRVMVNASKQL
                     TWSDVNAVPARNVGLLLGARPGNRYFTRRIDTAAALYHAGKVKWLLVSGDNGRKNYDE
                     ASGMQKALIAKGVPAKVIFCDYAGFSTLDSVVRAKKVFGENHITIISQEFHNQRAIWL
                     AKQYSIDAIGFNAPDLNMKHGFYTQLREKLARVSAVIDAKILHRQPKYLGPSVMIGPF
                     SEHGCPAKE"
     gene            complement(11597..12100)
                     /locus_tag="JN125_001786"
     CDS             complement(11597..12100)
                     /locus_tag="JN125_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311994.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HAY8871591.1"
                     /translation="MSNLTYLQGYPEQLLSQVRTLINEQRLGDVLAKRYPGTHDYATD
                     KALWQYTQDLKNQFLRNAPPINKVMYDNKIHVLKNALGLHTAVSRVQGGKLKAKAEIR
                     VATVFRNAPEPFLRMIVVHELAHLKEKEHNKAFYQLCCHMEPQYHQLEFDTRLWLTQL
                     SLGQDKI"
     gene            12185..13321
                     /gene="rlmG"
                     /locus_tag="JN125_001787"
     CDS             12185..13321
                     /gene="rlmG"
                     /locus_tag="JN125_001787"
                     /EC_number="2.1.1.174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (guanine(1835)-N(2))-methyltransferase
                     RlmG"
                     /protein_id="HAY8871592.1"
                     /translation="MSHLDNGFRSLTLQRFPATDDVNPLQAWEAADEYLLQQLDDTEI
                     RGPVLILNDAFGALSCALAEHKPYSIGDSYISELATRENLRLNGIDESSVKFLDSTAD
                     YPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKVLG
                     PTTTTLAWKKARLINCTFNEPPLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGAR
                     FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM
                     PEALDRSEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINS
                     ELYIVANRHLDYFHKLKKIFGNCTTIATNNKFVVLKAVKLGRRR"
     gene            13606..13920
                     /locus_tag="JN125_001788"
     CDS             13606..13920
                     /locus_tag="JN125_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mRNA interferase HigB"
                     /protein_id="HAY8871593.1"
                     /translation="MHLITQKALKDAAEKYPQHKTELVALGNTIAKGYFKKPESLKAV
                     FPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKCYIREVMTHKEYDFFTAVHRTKG
                     KK"
     gene            13917..14333
                     /gene="higA"
                     /locus_tag="JN125_001789"
     CDS             13917..14333
                     /gene="higA"
                     /locus_tag="JN125_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system antitoxin HigA"
                     /protein_id="HAY8871594.1"
                     /translation="MIAIADILQAGEKLTAVAPFLAGIQNEEQYTQALELVDHLLLND
                     PENPLLDLVCAKITAWEESAPEFAEFNAMAQAMPGGIAVIRTLMDQYGLTLADLPEIG
                     SKSMVSRVLSGKRKLTLEHAKKLATRFGISPALFID"
     gene            complement(14378..16396)
                     /locus_tag="JN125_001790"
     CDS             complement(14378..16396)
                     /locus_tag="JN125_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 2,4-dienoyl-CoA reductase"
                     /protein_id="HAY8871595.1"
                     /translation="MSYPSLFAPLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFY
                     AERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTITEAVHQEGGKIALQI
                     LHTGRYSYQPHLVAPSALQAPINRFVPHELTHEEILQLIDDFAHCAQLAREAGYDGVE
                     VMGSEGYLINEFLTLHTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSM
                     LDLVEDGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKL
                     KGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQSGRADEINT
                     CIGCNQACLDQIFVGKVTSCLVNPRACHETKMPILPAVQKKNLAVVGAGPAGLAFAIN
                     AAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYHRMIEVTGVTLKLNHTVT
                     ADQLQAFDETILASGIVPRVPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGF
                     DTAMYLSQPGESTSQNIARFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKAS
                     KPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVIC
                     AGQEPNRALAQPLIDSGKTVHLIGGCDVAMELDARRAIAQGTRLALEI"
     gene            complement(16822..19173)
                     /gene="ygjK"
                     /locus_tag="JN125_001791"
                     /pseudo
     CDS             complement(16822..19173)
                     /gene="ygjK"
                     /locus_tag="JN125_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417551.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase"
     gene            complement(19190..20260)
                     /gene="ygjJ"
                     /locus_tag="JN125_001792"
     CDS             complement(19190..20260)
                     /gene="ygjJ"
                     /locus_tag="JN125_001792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YgjJ"
                     /protein_id="HAY8871596.1"
                     /translation="MKLITAPCRALLALPFCYAFSAAGEEARPAEHDDTKTPAITSTS
                     SPSFRFYGELGVGGYMDLEGENKHKYSDGTYIEGGLEMKYGSWFGLIYGEGWTVQADH
                     DGNAWVPDHSWGGFEGGINRFYGGYRTNDGTEIMLSLRQDSSLDDLQWWGDFTPDLGY
                     VIPNTRDIMTALKVQNLSGNFRYSVTATPAGHHDESKAWLHFGKYDRYDDKYTYPAMM
                     NGYIQYDLAEGITWMNGLEITDGTGQLYLTGLLTPNFAARAWHHTGRADGLDVPGSES
                     GMMVSAMYEALKGVYLSTAYTYAKHRPDHADDETTSFMQFGIWYEYGDGRFATAFDSR
                     FYMKNASHDPSDQIFLMQYFYW"
     gene            complement(20394..21827)
                     /locus_tag="JN125_001793"
                     /pseudo
     CDS             complement(20394..21827)
                     /locus_tag="JN125_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311987.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
     gene            complement(21890..>22134)
                     /locus_tag="JN125_001794"
     CDS             complement(21890..>22134)
                     /locus_tag="JN125_001794"
                     /EC_number="3.2.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="beta-galactosidase subunit beta"
                     /protein_id="HAY8871597.1"
                     /translation="YYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVEVHEG
                     QIVICDIHEAYRFICNNAVKKVVLKVTIEDGYFHNK"
BASE COUNT         5481 a         5788 c         5749 g         5116 t
ORIGIN      
        1 cttaagtgtc cactgagtgt tgaaaagaaa cgcgccagca ttcgttacag cggagatgtt
       61 acttgtagtg tggtgactta ttcacaatta ccggagttga aacagcctaa attacgtgga
      121 aacgttcaga cggcgcaaag ggaggttgca ccatgagaaa tcgattgatt gcggcgatat
      181 tgggcttgtt tggcacgctc actggcgttc aggcagctcc tgacgtgacc agtgaaatta
      241 cgtatgattt ggcatctggt agagcggatt attacttctg gaaggatgaa gcgtcggcag
      301 gaaataatgg atatatgtgg tatgaatgtt cgtatcctga cctccaacaa acctgtacag
      361 ctaatggaaa tatatcgaca gtacaaatct atttaactga acaacgcagt gggatgcgtt
      421 ggccggtaaa actcaaagga tttaaaacag ccattgtaag tagcgatgaa gcgccgccag
      481 gatgcaaggg gggcaaaggg cttcagacga atcttaagga ttctaataga tcttcatgta
      541 cagaagatgg tcaacattat tatatatacg atacaaagtt tcttacgctc taccttgagc
      601 agacagagat gaagaatttg ccgattggtg gcgtctggaa ggggaaagtt aaattacatt
      661 cgaacagccc ggcccaggac tatttcgcaa atattaccct gaatacgctc gaccccaacc
      721 atattgacgt gttcttcccg gagttcgccc acgccacgcc aagggtgcag ttagacttgc
      781 atccaacagg aagcgttaac ggcagcaact acgcgcaaga tctgaccatg ttggacatgt
      841 gcctgtacga tggttttaac ggtaatgcca tcagttatga aatcatgctc aaagatgaag
      901 ggcgaccagc tgcagggcgc agagacggtg acttctctat ctatcgtcag ggaggaacct
      961 ctaccgacga gggagaacgc attgattacc gggtcaaaat gtacaacccg gaaaccggtg
     1021 ggcaaattga tgtgcgcaat aatgaaaata tggtctggaa cagcattaac ctgaaaagtg
     1081 tgcgtccggt ggtactgccc ggtattcgct atgccgtgat gtgtgtgccg acacccttga
     1141 ctctggcagt cgataaattc agcgtgatgg ataaacaggc cgggtactac atgggcaaat
     1201 tgtcagtaat ctttacgcct tccttgccaa ccatcaatta accctgcaaa gcggacaaac
     1261 gcttttttct atataaacga cgaagccgcc tgataaggcg gcttcgtcgt tataacttac
     1321 gttaaacgtt aatgttgcgg tgcgggatcg ttatgtgatt cctgcgctac ctcaatcgcc
     1381 ggtttgttct gcaacacggt ccagataacc agcgcaccta acaggtcgaa cactgccagt
     1441 actgcgaaca gcgggctgaa gccgatggtg tcagccagtg caccgacaac cagcgaaaac
     1501 agcgtacttg ccagccatgc ggacatcccg gttaaaccgt tcgccgtcgc cacttcgtta
     1561 cgaccgaaca cgtcagaaga gagcgtaatc agcgcgccag acagtgcctg atgagcaaaa
     1621 ccaccgatac acagcagcat aattgcgaca tacgggttgg tgaacaggcc gatcataccc
     1681 gggccaatca tcagcactgc acccagcgtt acgaccatct tacgggaaac gatcaggttc
     1741 acaccaaacc aacgttggaa cagcggcggc aggtaaccac cgaggataca accgaggtca
     1801 gcaaacagca tcggcatcca ggcgaacatc gcgatctctt tcaggttaaa gccgtaaact
     1861 ttaaacatga acagcgggat ccacgcgtta aaagtacccc aggctggttc tgccaggaaa
     1921 cgcggcagcg cgatacccca gaactgacgg ttacgcagga tctgaccaac ggacattttc
     1981 ttcgccgtgc tcacctggtg ctgggcttcc tgaccattaa taatatagtc gcgttcttca
     2041 tcggtcagat gcttctggtc gcgcggatgt ttatagaaaa tcagccatgc catcgcccag
     2101 ataaagctca atgcaccgga gatgataaat gccatctgcc agctgtgcat tacgattgcc
     2161 cataccacca gcggcggcgc gatcatcgca ccaatcgaag aacctacgtt aaagtaacct
     2221 accgcgatgg aacgctcttt cgccgggaac cattcggagc tggctttcag acccgccggg
     2281 atcatcgctg cttccgcggc accgactgca ccacgagcaa tcgccaggcc acccctgcta
     2341 ccagccagcg cggttgcacc acagaatacg gcccacagta cagcaaacat tgcataaccg
     2401 attttcgtac ccagcacatc cagtacatag cccgctaccg gttgcatgac cgtataagca
     2461 gcagaatagg ctgcgatgat ataggaatac tgttgggtgg agatgtttaa ctcttccatc
     2521 agagttggct cagctgccgc cacagtgtta cgcgtcaggt aaccaagcac ggtgccaagc
     2581 gtcaccagtg cgatcatata ccaacgtaac cctttaattt tacgcatgta aaacctcatc
     2641 gttttgttat atccgcagga agcgcggcca tcatcccgcc agaggctgaa gatgttagtt
     2701 acgaccgggt aaccgaaaaa aaaccggcac gccccgaacg ttgccatgaa agtttcgtgc
     2761 taattcggct tccgtaccgg ttaacccgat tcatctaaca aatgaatgaa tcggcaattt
     2821 gcattccgtc gacttatgat ttgcgacggc agaaagataa cttgtcatac aactttaaaa
     2881 ggtgagagcc aacataaatg tgcgaatatt tgtagggaca ttacctgacg acagcgaggc
     2941 cagtactggc gcggcctgca gcgagattta ccactttgag agtaattttt ttaactacgt
     3001 ttattgatct aactcacgaa aatatcttcg gactctggaa attggtgtga taactttgtc
     3061 agcatcgcac cataagcaag ctagctcact cgttgagagg aagacgaaaa tgactccgtt
     3121 tatgactgaa gatttcctgt tagataccga atttgcccgc cgtctgtatc acgactacgc
     3181 aaaagaccag ccgattttcg attaccattg ccatttgccg ccgcagcaga ttgcggaaga
     3241 ctatcgtttt aaaaacctgt atgacatctg gctgaaaggc gatcactaca aatggcgcgc
     3301 tatgcgtacc aacggtgtgg ccgagcgtct gtgtaccggt gatgcgtctg accgtgaaaa
     3361 atttgacgcc tgggcggcga ctgttccgca cactatcggc aacccgttat accactggac
     3421 gcacctcgaa ctgcgtcgtc cgtttggtat cactggcaaa ttgctttctc cgtcaactgc
     3481 cgatgaaatc tggaacgaat gtaacgaact gctggcgcag gataacttct ccgcgcgcgg
     3541 catcatgcag cagatgaacg tgaaaatggt cggcaccacc gatgacccga tcgattctct
     3601 ggagcatcac gcagagatcg ccaaagacgg ctctttcacc atcaaagtgc tgccgagctg
     3661 gcgtccggac aaagccttca acatcgaaca ggcgaccttt aacgactaca tggcgaagct
     3721 gggcgaagtt tccgataccg acattcgccg ctttgctgac ctgcaaactg gcttgaccaa
     3781 acgtctggat cacttcgccg ctcacggctg taaagtgtct gaccatgcgc tggacgtggt
     3841 gatgtttgct gaagcgaacg aagcggaact ggacagcatt ctggcgcgcc gtctggctgg
     3901 cgaaaccctg agcgagcacg aagtggcaca gttcaaaact gcggtactgg tgttccttgg
     3961 tgccgaatat gcacgtcgcg gctgggtaca gcagtaccac attggcgcgc tgcgtaataa
     4021 caacctgcgt cagttcaaac tgctggggcc ggatgtaggc tttgactcca tcaacgaccg
     4081 tccgatggca gaagagttgt ctaagctgct gagcaagcag aacgaagaaa acctgctgcc
     4141 gaaaaccatt ctgtactgcc tgaacccgcg cgataacgaa gtgctgggca ccatgatcgg
     4201 taacttccag ggcgaaggta tgccgggcaa aatgcagttc ggttccggct ggtggtttaa
     4261 cgatcagaaa gacggtatgg aacgtcagat gacccaactg gcgcagctcg gtttgctgag
     4321 ccgctttgtc ggtatgctaa ctgacagccg tagcttcctg tcatacaccc gtcacgaata
     4381 cttccgccgc attctgtgcc agatgatcgg tcgctgggtg gaagcgggcg aagcaccggc
     4441 ggacatcaac ctgctgggcg agatggtgaa aaatatttgc tttaacaatg cgcgtgacta
     4501 cttcgccatt gaactgaact aaggtctggg gttgatatgc aatacatcaa gatccatgcg
     4561 ctggataacg tcgcggtcgc tttagcggat ttggctgaag gcacagaagt cagtgtcgat
     4621 aaccagactg ttacgctgcg ccaggatgtt gctcgtggac ataaatttgc gttaacggat
     4681 atcgcaaaag gggccaatgt catcaaatat ggcctgccga ttggttatgc attggcggat
     4741 attgcggcgg gggaacacgt ccacgcccac aatacgcgca cgaatctgag cgatctggat
     4801 cagtatcgct atcaacctga ttttcaggat ctgcctgcgc aagcggcaga tcgtgaagtg
     4861 cagatctatc gtcgcgctaa cggcgatgtc ggggtgcgta acgagctgtg gatcctgcca
     4921 accgtgggct gtgtcaacgg catcgcgcgg cagatccaga accgttttct gaaagagacc
     4981 aacaacgctg aaggtaccga cggcgtgttc ctcttcagcc acacctacgg ctgctcacag
     5041 ctgggcgacg atcacattaa tacccgcacc atgctgcaaa acatggtgcg ccacccgaac
     5101 gcaggcgcag tgctggtgat tggtctgggc tgtgaaaaca accaggttgc cgcattccgt
     5161 gaaacgctgg gcgatatcga tcctgaacgc gttcatttca tgatctgcca acagcaggat
     5221 gatgagatcg aagccgggat cgagcatttg catcagctgt ataacgtgat gcgcaacgat
     5281 aaacgcgagc caggcaaact cagcgaactg aagtttggtc tggagtgcgg tggttctgac
     5341 ggtctttctg gtattactgc taacccgatg ctggggcgtt tctctgacta cgtgattgct
     5401 aacggcggta ctaccgtact gaccgaagtg ccggagatgt ttggcgcaga gcagttgctg
     5461 atggaccatt gccgcgacga agcaacgttt gaaaaactgg tcaccatggt caacgacttt
     5521 aaacagtact ttattgccca tgatcagccg atctacgaaa acccatcacc ggggaacaaa
     5581 gcgggcggta tcaccacgct ggaagacaaa tcacttggct gtacccagaa agcgggttcc
     5641 agtgtcgtgg ttgacgtgct gcgttacggc gagcgtctga aaacgccagg gctgaacttg
     5701 ttaagtgcgc cgggtaacga tgccgtagcg accagcgccc tggcgggtgc gggctgccat
     5761 atggtgctgt tcagtactgg tcgcggcacg ccatacggtg gatttgtgcc gacggtgaaa
     5821 atcgccacca acagtgaact ggcggcgaag aaaaaacact ggctcgactt tgacgcgggt
     5881 cagctgatcc acggtaaagc gatgccgcag ttgctggaag aatttatcga caccatcgtt
     5941 gagtttgcca acggtaaaca aacctgcaac gagcgtaacg acttccgcga actggcgatc
     6001 ttcaaaagcg gcgtaacgct ataaagtcga aatgagttgt taataaaaaa cggcgtttca
     6061 taatgtgaag cgccgtttgc ttttccatac ctgataagga tttatcatga ccgcgtattg
     6121 gctggcccag ggcgtgggtt tcatcgcctt tctgattggt atcacaacat ttttcaatcg
     6181 tgacgaacgt cgcttcaaaa agcagctttc ggtctatagc gccgttattg gcgtacattt
     6241 ttttcttctg ggcacctatc ccgctggtgc cagtgccatc cttaatgcca ttcgtacatt
     6301 gattacctta cgcacgcgca gcttatgggt aatggcgatt tttattgtgc tgactggcgg
     6361 aattggcctc gcgaagttcc atcatcctgt cgaactattg ccggttatcg gtacgattgt
     6421 cagtaccagg gcgctgttcc gctgtaaagg gctcaccatg cgctgcgtga tgtggttttc
     6481 aacgtgttgc tgggtgattc acaacttctg ggcggggtcg ataggcggca caatgattga
     6541 gggtagtttt ctgcttatga atggcttgaa tatcattcgt ttctggcgga tgcagaaaag
     6601 gggaattgat ccgtttaaag tagagaaaac ccctcccgcc gtagacgaaa ggggttaaac
     6661 aattaattac gcagggcgct atttgccaga cgatcgtctt ccgcctggca agctgccgca
     6721 gtgaacagca cgtcagttga agagttcagc gcggtttcgc aagagtcctg caatacgccg
     6781 atgataaagc cgacggcaac cacctgcatg gcgatatcgt tcgaaatacc gaacatatta
     6841 caggccagcg ggatcagcag cagagaaccc cccgccacgc cggatgcgcc acaggcacac
     6901 agagaagcca ccacgctcaa cagcagcgcc gtgggcagat cgaccgggat acccagcgta
     6961 ttaaccgcag ccagcgtcaa cacggtaatg gtgattgctg cgcccgccat attgatggtg
     7021 gcacccagcg gaatagaaac ggaataggta tcgcgatcca gattcagctt ttcacacagt
     7081 gccatattca ccggaatgtt cgccgcagag ctgcgggtga agaaggcata cacgccgctt
     7141 tcgcgcaggc acagcagcac cagcgggaac gggttacgac gaattttcca ccacaccagc
     7201 aatgggttaa ccaccagcgc caccagtaac atacagccaa ccagcacgac cagcagttgc
     7261 gcgtagcccc acagtgtgga gaaaccggtg gttgccaggg tagaagaaac cagaccaaaa
     7321 ataccaatcg gtgcgaagcg aatgaccagt ttcaccataa aggtgacggc attcgacaga
     7381 tcgttgacca ggtttttggt ggtctcgtta ccgtgacgca gtgcgaaacc gaggccaatt
     7441 gcccacacca ggatcccgat gtagttacct ttcagcagcg cgtcgatggg gttggaaacc
     7501 atgctcatta ccagcccgcg catcacttct acaatgcctg acggtggcga aatatcaccc
     7561 gcgctactgg ataagtgcag ggtagaaggg aaggcgaagc tgaaaacgac tgcggccaga
     7621 gcagcagaga aggtacccag cagatagagg aacaaaatag ggcggatatt ggttttctgc
     7681 ccgtgctggt ggttagcaat agatgccatc accagcatca acaccaggat gggggcaacg
     7741 gctttcagtg cgccgacgaa caaagtacct aacagaccaa cagcttccgc cgcgggtttt
     7801 gagatccatg ccagaagaat ccccagaaca aggccgacca ggatttgttt taccaggctg
     7861 ccatgagcca gacgccggaa tagccccggt gaacgttgcg tagtcatttt tcgatccttt
     7921 cattgtgttg tcgcacatcc ctggtgcgtt ctgtcgacgc atctttcagg atgtaacaaa
     7981 gtgtttgcaa ggtcgagtat aaggaaagtt acagcttcgg gaagcgaaaa atgctggatt
     8041 ttaaagagag gtcatatttt gcaacttaat tgttacattt gtttgacata aacagaggga
     8101 aggactggct actaaggctg attagataac atatgggcaa aactatttgg aatatgagaa
     8161 cggttgcgct cctttaatgt gctatgccat ataaagtcac tggcgcaggg agcgcgcagg
     8221 gggcggccaa tcgccgccgc cccctgcccc cccaggctct ggcgaacaaa atcgccgctg
     8281 cgcgattccc tcagcttatc ccttgcggct accgggtcgg gcgcaaggga acgtccctgt
     8341 aagatgcgcc ctcgccgcgc atccatgcgc gtcgccccgg cctccaggga acgcttcggc
     8401 gattttgacg ccaccaacag ccgtgcggtc tttttgtaaa gagctacaag ccaattacat
     8461 aattaatagc tcacctttgt ctggaatgag ttatctctag gaatggctta atatacagcg
     8521 aatcattctc cccgctgctt atcatgccga taattcaccc aggcgttgat aataaacgtc
     8581 atcaccagaa tgccaaacac cacgcccagc gagacggcga ttggaatatg gtagaagtcg
     8641 acaatcagca tcttgatacc gataaacacc aggatcaccg ccaggccata tttgagcatc
     8701 gagaaacgct ctgctacgcc cgccagcagg aaatacatcg cacgcaggcc gaggatcgca
     8761 aacaggtttg aggtcagcac aatgaacggg tcagtggtca cggcgaagat agccggaatg
     8821 ctatccacgg cgaaaatcac gtcgctcaat tccaccagaa tcagtaccag catcagcggt
     8881 gtggcgtaca gcaatccatt cttacgcaca aagaaatgct cgttgtcgat ggtgtcggtc
     8941 atgcgcaaat gaccgcgtag ccagcgcacc agcggcttgt tgccaatgcc tgattcatct
     9001 tcatgggcga gcgccatctt cacgccggta aacagcagga aggcaccgaa gatatacagg
     9061 atccagtcga actgcgaaat tagccagctg ccagtgaaga tcatgatggt acgcagaaca
     9121 atcgccccga gcacgccata caccagcacg cggcgttgta atgccgccgg aacagagaaa
     9181 tagctgaaca acatcagcca gacaaagacg ttatcgaccg ccagcgattt ctcaatcaga
     9241 taacccgtga gaaaggccag tgcctgtgga tcggcaacgg cgcgaccttc ggtttgcacc
     9301 agataccacc agaaagcggc gttaaacagt aacgacagcg tcacccaaac cagcgaccag
     9361 gccgcagcct gtttcatggt catggcatgt gccccacgac gcccctgcaa caacaggtcg
     9421 atagccagca taatggcgac aacaacagcg aatccgcccc atagcaacgg cgtgccgaca
     9481 gtattcatag aagttcctta cacataaaaa aaacggccaa cgtcggaaga cgtcagccgc
     9541 tgctttttat gcatagacct cgccttccgg caaggtctca cttacaacaa aaaaggaata
     9601 cgtctgcgta ttcctttcgg gttgcccggt gaccggatgt ggtttttcac acatcgtaat
     9661 gacgatcgac cggcaatgaa gttactcccc tttgcaggta acaaagtatg acagaccatt
     9721 cagccagtca atggtctgtt acataccttt tacactgttt tactttggca attatagttt
     9781 tacgctatct gccggaaaaa tcaccccagt ctggcggcgg atctcagtca gcagtttggc
     9841 ggtgatgcga ctgaccgcca gccctggatg atccaccaga tgctcatcca ccagggtagc
     9901 aaacagctct gcttcgtaga gcatggtatt aatatgctgc ggctgggtga gatcctgcat
     9961 ctggctgcca cgcggcacga agcacacttt ctggcattca gacagttttt caatcaccag
    10021 cgatcccgct tcgccctgaa tctcgctttc caggacagaa tcactgacct ttgagtgcag
    10081 caacgtaacg ctgaaatcac cgtaatccat caccaccacg ccgtgggcat ctacgccgct
    10141 tgccaacaaa ctggcggttg cctgcacgct tttcggttca ccgaataatg ccaccgccga
    10201 cgccaggcag taaaagccga tatccataat tgaaccgtta gagaatgccg gattaaaggt
    10261 gttgggattc tcaccatcca ggtaacgttg ataccgcgag gaatactggc aatagttgaa
    10321 aaagacttta cgcaatttgc cgactttcgg cagcgcctgg cgcagcaaat gaaagttcgg
    10381 caggctggcg gttttaaatg cctcaaacag caccacctga ttttcccgcg cacaggcaat
    10441 ggcggcatcc acttccgcca gattcgacgc cagtggtttc tcgcaaatca catgaatttt
    10501 atggctaagg aaaagttgtg tctgggaaaa gtgcagggca ttcgggctgg caatatacac
    10561 cgcgtcaatg gcatcgcttt ccgccatcgc ttccagcgag gtaaacagat gctcgacaga
    10621 aaaatcattg gcgaagtgct gggcctgttc aaggctgcgg gaatatacgg cggttaactt
    10681 gtatttaccg ctctcatggg cggcctcgac gaactggcga gtgatccagt tcgtaccaat
    10741 cacagcgaaa cgtatcataa cgcgtggata ctccataaag ggattctgtc gtcaatgtag
    10801 cacgcctttt tcatcttcga cgtgcgcaga tacgcattat tcttttgccg gacagccatg
    10861 ctcactaaac ggcccaatca tgaccgatgg cccgagatat ttcggctggc gatggaggat
    10921 tttggcgtca atcacggcgc tgacacgagc gagtttctcc cgcagttgag tataaaaacc
    10981 gtgcttcata ttgaggtcag gcgcgttaaa accgatagcg tcgatgctgt actgttttgc
    11041 cagccagatg gcgcgttggt tatgaaattc ttgcgagata atggtgatat ggttttcacc
    11101 aaaaaccttt ttggcacgca ctaccgaatc cagcgttgag aatccggcat agtcgcagaa
    11161 gatcactttc gccggtacgc ctttagcgat caaagccttc tgcatacctg atgcttcatc
    11221 gtaattttta cgtccgttat cgccacttac cagtagccat ttcacttttc cggcgtggta
    11281 caacgctgct gcggtatcaa tacgtcgggt aaagtagcga ttacccggcc tggcccccag
    11341 caataagccc acgttacgcg ccggaactgc gttgacatcg ctccaggtca gctgcttgct
    11401 ggcgttgacc attactcgat cggcgataaa aatggtcgct cctgccacaa gtaacagtaa
    11461 gcaggcaatc tttagagtcc ggcgagaaaa acaaatacgg agaagaaggc ggggctgcat
    11521 ggtcgttatc cttaacgaaa ggggggaggt cgattttagg cgctaaagaa agaaaagata
    11581 acgcctgaca tcattttcag attttgtcct gcccaagcga caactgcgtt agccacagcc
    11641 gggtgtcgaa ctccagctgg tggtactgcg gctccatatg gcagcacaac tggtaaaacg
    11701 ctttgttatg ctctttctcc ttcaggtgcg ccagttcgtg caccacgatc atacgtaaaa
    11761 acggttccgg cgcgttgcga aacacagtag cgacgcggat ctctgctttt gctttcagct
    11821 tgccgccctg cacacgagaa acagcggtat gtaacccgag cgcgtttttt agcacatgga
    11881 tcttattgtc atacatcact ttattgatcg gcggggcatt gcgcagaaac tgatttttta
    11941 gatcctgagt atattgccag agggctttat cggtggcgta gtcgtgtgtt cccggatagc
    12001 gttttgccag cacatcgccc agacgctgtt cgttaatcag cgttcgcacc tgggaaagta
    12061 gctgctcggg ataaccctga agataagtaa gattgctcat aaccgcccac gaaaaagaga
    12121 aaaagggtat actcacgcac ccttttcagg ggcaacgtcg aaattttatc attcaggagg
    12181 gccgatgagc cacttagaca acggtttccg ttcactgaca ctacaacgtt ttccggcgac
    12241 ggatgacgtt aacccgctac aggcgtggga agcggcggat gaatatttgc tgcaacagtt
    12301 ggacgacaca gaaatccgcg gcccggtgtt gatcctgaat gatgcctttg gtgcgttaag
    12361 ctgcgcgctg gcagaacata agccgtacag cattggcgac tcatacatca gtgaactggc
    12421 gacgcgcgag aatttacgcc tcaacgggat tgatgagtcg agcgtgaagt ttctcgacag
    12481 caccgccgac tacccgcaac agccgggtgt ggtgctgatc aaagtgccga aaacactggc
    12541 attgctggaa caacaactgc gtgcgctgcg caaagtggtc acgtcggata cacgtattat
    12601 tgccggtgcc aaagcccgtg acattcacac ttccacgctg gaactgttcg aaaaagtgct
    12661 cggcccgacc accaccacgc tggcatggaa aaaagcgcgc ctgattaatt gcacgttcaa
    12721 tgaaccgccg ctggccgatg cgccgcagac cgttagctgg aagctggaag gtactgactg
    12781 gactatccat aaccatgcga atgtcttctc ccgcaccggg cttgatatcg gcgcgcgctt
    12841 ctttatgcaa catctgccag agaatctcga aggggagatt gtcgatctcg gttgcggtaa
    12901 tggcgttatt ggtctgacgc tgcttgataa aaacccgcag gcgaaagtgg tgtttgtcga
    12961 tgaatcgccg atggcggttg cttccagccg tttgaacgtt gaaaccaaca tgccagaggc
    13021 gttggatcgc agcgagttta tgatcaacaa cgcgctctcc ggcgtggagc ctttccgctt
    13081 taatgctgtg ctctgcaacc cgccgtttca ccaacaacat gcgctgaccg ataacgtcgc
    13141 ctgggagatg ttccaccatg cccgccgctg cctgaaaatc aacagcgagc tgtatattgt
    13201 tgccaaccgt cacttggatt acttccataa actgaagaag attttcggca actgcaccac
    13261 catcgccacg aataataaat ttgtggtgct gaaagcagtg aagctggggc gtcgtcggta
    13321 agattgggag ttacctgccg gatgcggcgt taacgcctta tccggcctac gttcagcacg
    13381 ttactcccag gccggataag acgcggcaag cgtcgcatcc ggcaatgtct gcccagttct
    13441 ggaatcgcgc ttccataaaa caaaaaatcc ctctcaccat cctctacatt ctcttgttta
    13501 gcgtttttct acgtttattc ttccgtcaca cagataaatt catacgttgc caatctgtca
    13561 acggatgtta tcatattgcc aatttgtcaa cggacgtgat gaagaatgca cctgataact
    13621 caaaaagcat tgaaagatgc tgcggaaaaa tacccgcaac ataaaacgga gttggtggct
    13681 ctggggaaca cgattgctaa gggatatttc aaaaaacctg agtcattaaa agcagtattc
    13741 ccatctctgg ataacttcaa atatctggat aagcattatg ttttcaatgt tgggggcaat
    13801 gaattacgtg ttgtagcaat ggtctttttt gaatcgcaaa agtgctacat acgtgaagtt
    13861 atgacgcata aagaatacga tttctttacc gctgttcatc gtactaaggg gaaaaaatga
    13921 ttgcgattgc cgacatcttg caagcaggag aaaagctaac tgcggtggcc ccttttctgg
    13981 cgggtattca gaacgaggaa caatacaccc aggcgctgga actggtagat catctgctgc
    14041 tcaacgatcc tgaaaacccc ttgctggatc tggtgtgtgc caaaataacc gcgtgggaag
    14101 aatcagcgcc cgaatttgcg gaatttaatg ccatggctca agccatgcct ggcggtatag
    14161 ccgtgattcg tacccttatg gatcaatatg gtttaaccct tgccgatctg ccggaaattg
    14221 gcagtaaatc tatggtgtca cgcgttttga gcgggaagag gaaattaacg ctggaacacg
    14281 ctaaaaaatt ggcaacgcga ttcggcattt ctcccgcctt gtttattgat taacgcgacg
    14341 tgccggatgc gttgcatccg gcgcttcaaa taacgattta aatctccagc gccagccgtg
    14401 ttccctgggc aattgcccgt cgtgcgtcca gctccatagc cacatcgcag ccgccaatta
    14461 aatgcacagt tttcccgcta tcaatcagcg gttgcgccag cgcgcggttt ggctcttgcc
    14521 ctgcgcagat caccacattg tccacagcta atacctgcgt ttcgccgttg atcaccacat
    14581 gcagcccgtc atcgtcaatc ttctgataac ttacgcctgg gatcattttc acaccccgcg
    14641 agagcagggt ggtgcgatgg atccagccgg tggttttgcc taacccctgt cccggtttgc
    14701 tggctttgcg ctggagcatc acaatttgcc gtgggctacg cgggatctgc attccctgcg
    14761 ggcttaagcc accagcctgt tgtaggctgc tgtcgatccc ccactcatta cagaacctgg
    14821 cgatattctg gctggtggat tcgcccggct gacttaaata catcgccgta tcaaaaccaa
    14881 tcccgccaca accgatgatg gcaaccttgt tgcctaccgg cgctttgtcg cgcagtacat
    14941 cgagataact caataccttc ggatgatcga tcccgtcgat aggcggaacg cgcggcacga
    15001 tcccactggc gaggatcgtt tcatcgaacg cctgtaactg atccgccgtc acggtgtgat
    15061 tgagtttcag cgtcacgccc gtcacttcga tcatccggtg gtaatagcgc agcgtttcgt
    15121 aaaactcctc tttgccgggg atctgtttgg cgatattaaa ctgcccgccg atctcgctgt
    15181 gggcatcaaa caatgttacc tgatgcccac gcgccgccgc gttaatggca aacgccagcc
    15241 cagcaggtcc cgcaccgacc accgccagat tttttttctg cacggcagga aggattggca
    15301 ttttggtttc gtggcaggcg cgaggattca ccaggcacga ggtgactttg ccaacgaaga
    15361 tctgatcgag gcaggcctga ttgcagccaa tgcaggtgtt gatctcatcg gctcgccccg
    15421 attgcgcttt tgacagcagt tccgcatcag caagaaacgg tcgtgccatc gataccatat
    15481 cggcatcgcc gcgcgagaga atatcgtcgg caacctgcgg atcgttaatc cggttggtgg
    15541 ttaccagcgg cagcgagacg tggcctttca gtttgcgcgt gacccagcta aatgcgccgc
    15601 gcggcacggg cgtggcaatg gtcggaatac gtgcttcatg ccagccaatg ccggtgttga
    15661 taatggtcgc gcccgccgct tcaatggcct gcgccagctc taccgtttcg gcaaaagtcc
    15721 cgccgtcttc gaccaggtcg agcatcgaca gtcggtagat aataatgaag tcgttgccga
    15781 cgcgttcgcg caccgcacgc actacttcta cggcaaatcg catccggttg cggtaatcgc
    15841 cgccccactg gtcactacgc tgattggtgt gcagcgtcag aaattcgttg atcaaatacc
    15901 cttcggaccc cattacctct acaccgtcgt atcctgcctc ccgtgccagt tgcgcgcagt
    15961 gggcgaaatc gtcgatcagt tgcaggatct cttcatgggt gagttcgtga ggaacgaaac
    16021 ggttgatggg ggcctgcaat gcggagggag cgaccagatg cggttggtag ctgtagcgcc
    16081 cggtatgcaa aatttgcagg gctattttgc cgccttcctg atgtaccgct tcggtaatgg
    16141 tgcgatggtg tgggatctgg ctggcgtcgt tgagcattgc gccaccttcc atgccaacgc
    16201 ctgttaaatc tggtgcaatg ccgccgctga caatcagcgc cacgccgtga cgggcgcgtt
    16261 cggcataaaa cgctgccagc cgctcggcac cgtccgggta ttcctccagc ccggtgtgca
    16321 ttgagcccat caacacgcgg ttttttaacg tggtaaaacc taaatccagc ggggcgaaca
    16381 gcgacgggta gctcataaaa ttgtccagta tgtaaaataa ttgttatgtg gtcggatgag
    16441 ttctaattta gccgtcgccg gagaaaaggg aaaaggggag tgcggggttt gtgatgggat
    16501 tcaaaaagaa tacgcccggt ggtaacgccg gatgcgacgc ttgccgtgtt ttatccggcc
    16561 tgggggattg cacatgtagg gcggataagg cgttcacgcc gcatccgcca gtggcgcggt
    16621 gcagatgccg gatgcgacgc ttgtcgcgtc ttatccgacc tacgggaatg cacatgtagg
    16681 gcggataagg cgttcacgcc gcatccgcca gtggcgcggt gcagttgccg gatgcaacgc
    16741 ttgccgcgtt ttatccggcc aggaggattg cacatgtagg gcggataagg cgtttacgcc
    16801 gcatccgcca gcagttgcaa attattgctt acggaaaaaa tcgttataca acatatacaa
    16861 atgcgcggca ctccaggaga aatttggtgc gccttgctgc gcgccagtca gcgggttgta
    16921 attctcctga attgggccat cggcggttaa tcctttggcg tgccggaaga acgtatccgc
    16981 cagcttcagg gcatcatcac gataaccgta acgctccatc cctttcagag caaaccagaa
    17041 ctgatccacc catacgcgcc cgcgccagta gatatcagcg ccaaaagccg gattggttaa
    17101 cgccgccgtt cccagcggga caaaggtgtt gaactcttta ggatcgagca tcaccttcac
    17161 caccgcgtcg gcattggcct gcgttgccgc accgttaaac agcggcgacc agccttccgg
    17221 ccctttaccg cgctcaacaa tcggtttgcc cgcgcagccg ttcgccagtg gtttatcttc
    17281 aatacgtacg tcatagtaga actgggtagt cgggtcgaac atacaggtgt tgatgtagtc
    17341 cgcgagctgc tgtgccaact ggcgatagcg tttggcctct tctggcttac cgaggatggt
    17401 tgccatctcc gccagataat ggttatcgct gtacatatag ctggcctgat ccaccgactc
    17461 ctgcaatagc gagtagccca gcaacgttcc gtcctgactg cggttttcgg cgaatttcac
    17521 cgtccagtcg ctacgtttgc caccattagc gacatattta tccaactgtt ctttgtcgat
    17581 aaaaccaaag acggcggcat catcacgccc cgattcccac gacgcagcga cctgtgccgg
    17641 aatttccaga ctgtcgtact ggcctttctc caccacgcgg gcgtagttgt tcagcccaga
    17701 ctgcgtctct tctttgttgc ctttcttcac cgcaaacagc atctcgccgc tctcagtgtt
    17761 gtgggctttg tcgcgggtcg cgccatattc cggcacgccg ttgccgttgt gatcgcggtt
    17821 acgtaaccac cagtcgtgat aggccaccag tttcgggtac atctctgcca accaggcttt
    17881 atcctgggtg acgttgtaca cttctatcac cgaccaggcg gcaaggctgg gtttggtatt
    17941 acgttcgttc cagttgccgc catcgccacc acgctcgggg ctaaggttcc acgctatcag
    18001 gtcggggaca aagcccacat cctgcggacg cacgcggtcg ccaggctgga tctgccagga
    18061 gaagaccgcg cggatattct ctttggcgat gtccggattg aaatgcgcca tcgcaaacgc
    18121 ctgcttctag gtatcccacg gccaggtctg attgccggag aaccagcgcc cggtcaccga
    18181 cggtgtaacg gtgttaaatt tcaccgcacc gcccggtgag cgccagttac cgttgagcgt
    18241 ttcgatcgct ttcaccgcga cgcgcgtctg ttccggcgtc gcatccggat tggttaaccc
    18301 tttcttcagg tattcttccc agcgttgctg cgaggcggtg agataaaacg ccggacgcgc
    18361 cagaatatcg cggatctgca tttgctcttt gctaacttcc tgagcggtca gcagatggga
    18421 ataggtggtg tagagcgtgg tcgaaccgtt gatatgcgcc ttactggtaa agcgattacc
    18481 gttgatttca gtctgcaccg gcagggattt atgcacctga tattccgatt cgccggaggt
    18541 cagcagatcc caggtggcgc gcactttgcc aaaggtgact ttcaggccat cacgggtggc
    18601 gctgattttg cgctgatagt cagggtattc gccagcaatg gttttatcgg aaagcggttt
    18661 cccttctttc gcttccagtt tttccagcag ttcgccgtcc cacaccagat ccagcggttt
    18721 attgctggtg attttggttt ccagtagtga cgtgcgcggc gtggcgaagc gcagagtcat
    18781 ttcgacttgc acatcttttg ctgtcagttt ttgcaccagc gcaccgggaa tactgtatgc
    18841 ctccagcgta aagtcgactt tcttgccgtc ctgccagacg gtcaggcggt cgaaattgct
    18901 ggccataaag ttgatgtact cttccgtcag cagcgcaacg cccggaaagc cgcccatggt
    18961 gttagggccg tctggcaaca gatgaccatg ccaggctccg agatcgaaaa acggattaaa
    19021 acgctggtga tcgtcgtaat cgtaatcctt catgtactgc ggcgcgccag tacggttaat
    19081 cacgttttta taattgtcgg cgttagcggc atgggcggaa aaacttatca gcagagcgca
    19141 ggttactggc gttaaaatag tttttatttt catgaaatta cagtccttat taccagtaga
    19201 aatattgcat caggaagatt tggtcgctgg gatcgtgaga ggcatttttc atgtagaagc
    19261 ggctatcaaa agccgtggcg aaacgtccgt cgccgtattc gtaccagata ccaaactgca
    19321 tgaaagaggt ggtttcatcg tcagcgtggt cagggcgatg tttggcgtag gtgtaagcgg
    19381 tggagagata aacgcccttt aacgcttcat acatggcgct caccatcatc ccactttcac
    19441 ttcccggtac gtccagcccg tcggcgcgtc cggtatggtg ccaggcgcga gcggcaaagt
    19501 taggagttag caggcccgtg agatagagct gtcctgtgcc gtcggtgatt tccagaccgt
    19561 tcatccaggt gatgccttcg gcaaggtcat actggatgta accgttcatc attgccggat
    19621 aggtgtattt gtcgtcatag cgatcgtatt tgccaaaatg tagccaggct ttgctttcat
    19681 catgatgtcc ggcaggagtc gcggtgacgc tataacgaaa gttgccgctt aagttctgta
    19741 ccttcagcgc agtcataatg tcgcgggtat tgggaatgac gtagcccaga tcgggggtga
    19801 aatcgcccca ccattgcagg tcatccagcg aggaatcctg acgcagactg agcatgattt
    19861 cagtgccatc attggtacga taaccgccat agaaacggtt aattccgccc tcgaaaccac
    19921 cccagctatg gtctggcacc caggcattgc cgtcgtggtc ggcctgcacg gtccagcctt
    19981 cgccgtaaat caggccgaac caggagccgt acttcatctc caggccacct tcaatatagg
    20041 taccgtcgct gtatttatgt ttattctcac cctctaaatc catatatcca ccaaccccta
    20101 attcgccgta aaaacgaaat gaaggagaag atgtcgaggt aattgcgggt gtttttgtgt
    20161 cgtcatgttc tgccggacgt gcttcttctc ctgccgcaga aaaggcgtag caaaacggca
    20221 gagcaagtaa tgctctgcat ggtgcagtga ttaatttcat tgtgttaatc catgagctaa
    20281 agaaaaagta cagcctttta tcgttgtaat tataaaaata taaaggcaga aactattttc
    20341 cctctcctca tccaggaaga gggaaaatgc ctgctcattt tttattattc tgcttaatca
    20401 acattgctgg ctggcgtcgc ttcaatatgg cgctcttcag ccgttaatcc ctttatatat
    20461 ttactgtatt tccaccacgc aaagccaagg aagataacaa taccgccgac gttataaaaa
    20521 atgatggtca gaatattcgc gccagtcggg aatgtcgaag cgacaaaccc tacggcaaat
    20581 atcgcaatct gcattgaaac aacgataata ccggtgcggc gggagctcat acggaaatcg
    20641 cgtggcaggt gatctaattt ggcgcgtaaa ttcaggtaag ccagcatgat gaataacggc
    20701 ggaagcatgg acgctgcggc ggtcatatta ataatagtat tcatcagatc ctgcacggta
    20761 ttggaaccga gcatcgggat aatcatcagc gggatgacga tcaggaactg gatccacgct
    20821 gcgcgcgccg gaacgccgtt ttcgttcagt tcgacggttt tcttaccaaa gatgccttcc
    20881 gggatttcgg agaagaaaat tttcaccggc gttgcggtcc acatcagcag ggaaccgaac
    20941 atcgcggtaa aggacaccag accgacaaag cgattcatca acgcttccgg tagaccaaaa
    21001 tacgccgcca tgccatggaa tacctgcacc gatccgccgg taaatttcaa ctctttgctg
    21061 ctgacgaaga cgttaatcag caccgaggag acggaataca gtacgccgat aaaaatcccg
    21121 gcgaggatga tcactttaac gaacgatttc gaaccgcctt tgacgtcgtt aacgtacaca
    21181 gcgacggact ccgcgccacc tgcggccata aagatccagg tggtaacgcc gaggaacgcc
    21241 cagttgaagt tcgggatcat cgcgtcaacg gtgatggggt cagcaggctg tacgccgcca
    21301 accagcgccg tacctgccag taaaatgtag gagagcgtta acagcagcat cagcgttgaa
    21361 gtgacggagg taattggccc caacattttc gccccgttgg tggaaaccta ggtggagaag
    21421 gcgaacagca ccatactgat aatggtggtg gcaaccggcg tcataatata ttcgtatccg
    21481 aggaaggcat acgaagcata agcaataacg cgcggcaaca gtgaggtgaa aaagaacagg
    21541 tttacgaacc agtaggtata ggcagtaata aatgcccaac gtccgcccag cgaacttttt
    21601 acccacgcgt agacaccggc ttctgagttt ttatttaacg aaacaaattc tgcgatgatc
    21661 agacagaagg gaataaaata aaaaatcgtc gcgaggaaaa acatcggtgc cgaggccagt
    21721 ccaagctcaa tattattatt gataacgttg ttaaagctgt aaacggcagc aaaagtcagc
    21781 gagagcaagc cgaatttgcc gattgtatta cgtttggtat cagacataac acatctccga
    21841 aaatgtgtag ggtagcggtg gcggcaaact ccttttgccg ccgtagttgt tatttgttat
    21901 ggaaataacc atcttcgatg gtgactttga gaaccacttt tttgaccgcg ttattgcaga
    21961 taaaccgata cgcttcatgg atatcgcaaa taacgatttg cccttcgtgg acctcaacgg
    22021 tttctccgca gccttttaaa tattcacggt cagtttcatc acgataatat tccactacct
    22081 gtaatgtctc tttcggcgca tattcaattt tttgctgccc ttgcaggtag taat
//
LOCUS       DADMHM010000055        21447 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.056, whole genome shotgun sequence.
ACCESSION   DADMHM010000055 DADMHM010000000
VERSION     DADMHM010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 21447)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21447)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21447
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.056"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..422
                     /locus_tag="JN125_001795"
     CDS             <1..422
                     /locus_tag="JN125_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="fructuronate reductase"
                     /protein_id="HAY8871598.1"
                     /translation="ADKLIARFANPALKHKTWQIAMDGSQKLPQRMLAGIRIHLGRET
                     DWSLLALGVAGWMRYVSGVDDAGNAIDVRDPLSDKIRELVAGSSSEQRVTALLSLREV
                     FGDDLPDNPHFVQAIEQAWQQIVQFGAHQALLNTLKI"
     gene            540..1526
                     /locus_tag="JN125_001796"
     CDS             540..1526
                     /locus_tag="JN125_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HAY8871599.1"
                     /translation="MTRTNLITGFLGSGKTTSILHLLAHKDPNEKWAVLVNEFGEVGI
                     DGALLADSGALLKEIPGGCMCCVNGLPMQVGLNTLLRQGKPDRLLIEPTGLGHPKQIL
                     DLLTAPVYEPWIDLRATLCILDPRLLLDEKSASNENFRDQLAAADIIVANKSDRATPE
                     SEQALQRWWQQNGGDRQLIHSEHGKVDGHLLDLPRRNLAELPASAAHSHQHVVKKGLA
                     ALSLPEHQRWRRSLNSGQGYQACGWIFDADTVFDTIGILEWARLAPVERVKGVLRIPE
                     GLVRINRQGDDLHIETQNVAPPDSRIELISSSEADWNALQSALLKLRLATTA"
     gene            1565..2278
                     /gene="lpxT"
                     /locus_tag="JN125_001797"
     CDS             1565..2278
                     /gene="lpxT"
                     /locus_tag="JN125_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311093.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Kdo(2)-lipid A phosphotransferase"
                     /protein_id="HAY8871600.1"
                     /translation="MIKNLPQIVLLNIVSLALFLSWYIPVNHGLWLPIDADIFYFFNQ
                     KLVESKAFLWLVALTNNRAFDGCSLLAMGMLMLSFWLKENAPGRRRIVIIGLVMLLTA
                     VVLNQLGQALIPVKRASPTLTFTNINRVSELLSVPTKDASRDSFPGDHGMMLLIFSAF
                     MWRYFGKVAGLIALIIFVVFAFPRVMIGAHWFTDIIVGSMTVILIGLPWVLLTPLSDR
                     LITFFDKSLPGKNKHFQNK"
     gene            2690..3256
                     /gene="mepS"
                     /locus_tag="JN125_001798"
     CDS             2690..3256
                     /gene="mepS"
                     /locus_tag="JN125_001798"
                     /EC_number="3.4.17.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional murein DD-endopeptidase/murein
                     LD-carboxypeptidase"
                     /protein_id="HAY8871601.1"
                     /translation="MVKSQPILRYILRGIPAIAVAVLLSACSANNTAKNMHPETRAVG
                     SETSSLQASQDEFENLVRNVDVKSRIMDQYADWKGVRYRLGGSTKKGIDCSGFVQRTF
                     REQFGLELPRSTYEQQEMGKSVSRSNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHAST
                     SSGVIISSMNEPYWKKRYNEARRVLSRS"
     gene            3437..4993
                     /locus_tag="JN125_001799"
     CDS             3437..4993
                     /locus_tag="JN125_001799"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic di-GMP phosphodiesterase"
                     /protein_id="HAY8871602.1"
                     /translation="MFIRAPNSGRKLLLTCIVAGVMIAILVSCLQFLVAWHKHEVKYD
                     TLIIDVQKYLDTYFADLKSTTDRLQPLTLDTCQQANPELTARAAFSMNVRTFVLVKDK
                     KTFCSSATGEMDIPLNELIPALDINKNVDMAILPGTPMVPNKPAIVIWYRNPLLKNSG
                     VFAALNLNLTPSLFYSSRQEDYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIA
                     GIPLTVRLYADDWTWNDVWYAFLLGGMSGTVVGLLCYYLMSVRMRPGREIMTAIKREQ
                     FYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFEL
                     IARDAAELEKVLPVGVKFGINIAPDHLHSESFKADIQKLLTSLPAHHFQIVLEITERD
                     MLKEQEATQLFAWLHSVGVEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTET
                     ITSPVLDAVLTLAKRLNMLTVAEGVETPEQARWLSERGVNFMQGYWISRPLPLDDFVR
                     WLKKPYTPQW"
     gene            5075..6889
                     /locus_tag="JN125_001800"
     CDS             5075..6889
                     /locus_tag="JN125_001800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311096.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HAY8871603.1"
                     /translation="MIVRILLLFIALFTFGAQAQAIKESYAFAVLGEPRYAFNFNHFD
                     YVNPAAPKGGQITLSALGTFDNFNRYALRGNPGARTEQLYDTLFTTSDDEPGSYYPLI
                     AESARYADDYSWVEVAINPRARFHDGSPITARDVEFTFQKFMTEGVPQFRLVYKGTTV
                     KAIAPLTVRIELAKPGKEDMLSLFSLPVFPEKYWKDHKLSDPLATPPLASGPYRVTSW
                     KMGQNIVYSRVKDYWAANLPVNRGRWNFDTIRYDYYLDDNVAFEAFKAGAFDLRMEND
                     AKNWATRYTGKNFDKKYIIKDEQKNESAQDTRWLAFNIQRPVFSDRRVREAITLAFDF
                     EWMNKALFYNAWSRTNSYFQNTEYAARNYPDAAELVLLAPMKKDLPPEVFTQIYQPPV
                     SKGDGYDRDNLLKADTLLNEAGWVLKGQQRVNATTGQPLSFELLLPASSNSQWVLPFQ
                     HSLQRLGINMDIRKVDNSQITNRMRSRDYDMMPRLWRAMPWPSSDLQISWSSEYINST
                     YNAPGVQSPVIDSLINQIIAAQGNKEKLLPLGRALDRVLTWNYYMLPMWYMAEDRLAW
                     WDKFSQPAVRPVYRLGIDTWWYDVNKAAKLPSARQQGE"
     gene            6890..7984
                     /locus_tag="JN125_001801"
     CDS             6890..7984
                     /locus_tag="JN125_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="microcin C ABC transporter permease YejB"
                     /protein_id="HAY8871604.1"
                     /translation="MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEF
                     GNAGVLPGAGGEGVRASHAQTGVGNISDSNYRGGRGLDPEVIAEITHRYGFDKPIHER
                     YFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV
                     HNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYFDLFPLRGLVSANFDSLPWY
                     QKITDYLWHITLPVLATVIGGFAALTILTKNSFLDEVRKQYVVTARAKGVSEKNILWK
                     HVFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGYEATVSRDYPVMFGTL
                     YIFTLIGLLLNIVSDISYTLVDPRIDFEGR"
     gene            7984..9009
                     /locus_tag="JN125_001802"
     CDS             7984..9009
                     /locus_tag="JN125_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAY8871605.1"
                     /translation="MSRLSPVNQARWARFRHNRRGYWSLWIFLVLFGLSLCSELIAND
                     KPLLVRYDGSWYFPLLKNYSESDFGGPLASQADYQDPWLKQRLENNGWVLWAPIRFGA
                     TSINFATDKPFPSPPSRQNWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVL
                     AGALQGYYGGKVDLWGQRFIEVWSGMPTLFLIILLSSVVQPNFWWLLAITVLFGWMSL
                     VGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFILCSSITTL
                     TSLDFLGFGLQLGSPSLGELLLQGKNNLQAPWLGITAFLSVAILLSLLIFIGEAVRDA
                     FDPNKAV"
     gene            9011..10600
                     /gene="yejF"
                     /locus_tag="JN125_001803"
     CDS             9011..10600
                     /gene="yejF"
                     /locus_tag="JN125_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="microcin C ABC transporter ATP-binding protein
                     YejF"
                     /protein_id="HAY8871606.1"
                     /translation="MTQTLLAIEDLSVGFRHQQTVRTVVNDVSLQIEAGETLALVGES
                     GSGKSVTALSILRLLPSPPVEYLSGDIRFRGESLLHASDQTLRGVRGNKIAMIFQEPM
                     VSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG
                     ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQGELNMGMLFITHNLS
                     IVRKLAHRVAVMQNGRCVEQNYAATLFASPTHPYTQKLLNSEPSGDPVPLPEPASTLL
                     DVEQLQVAFPIRKGILKRIVDHNVVVKNISFTLRAGETLGLVGESGSGKSTTGLALLR
                     LINSQGSIIFDGQPLQNLNRRQLLPIRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVH
                     QPTLSAAQREQQVIAVMHEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILD
                     EPTSSLDKTVQAQILTLLKSLQQKQQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQG
                     PCARVFAAPQQEYTRQLLALS"
     gene            complement(10604..10948)
                     /locus_tag="JN125_001804"
     CDS             complement(10604..10948)
                     /locus_tag="JN125_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871607.1"
                     /translation="MTSLQLSIVHRLPQNFRWSAGFAGSKVEPIPQNGPCGDNSLVAL
                     KLLSPDGDNAWSVMYKLSQALSDIEVPCSVLECEGEPCLFVNRQDEFAATCRLKNFGV
                     AIAEPFSNYNPF"
     gene            complement(11281..12460)
                     /gene="bcr"
                     /locus_tag="JN125_001805"
                     /pseudo
     CDS             complement(11281..12460)
                     /gene="bcr"
                     /locus_tag="JN125_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311101.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter Bcr"
     gene            complement(12488..13183)
                     /gene="rsuA"
                     /locus_tag="JN125_001806"
     CDS             complement(12488..13183)
                     /gene="rsuA"
                     /locus_tag="JN125_001806"
                     /EC_number="5.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA pseudouridine(516) synthase RsuA"
                     /protein_id="HAY8871608.1"
                     /translation="MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE
                     HDVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLD
                     IDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDL
                     TKPAVLEVITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGE
                     YRPLTEEEIASVV"
     gene            13332..15092
                     /locus_tag="JN125_001807"
     CDS             13332..15092
                     /locus_tag="JN125_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HAY8871609.1"
                     /translation="MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL
                     ARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR
                     NLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGW
                     IYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS
                     NGLFSEADLNRELKKQQRITPHIISQIMEFAEKRKGVMIFAATVEHAKEIVGLLPAED
                     AALITGDTPGAERDVLIEDFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLY
                     QQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANT
                     FWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRE
                     CDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDEDGADVSERF
                     RLQTPAQRTAFEQLFIRPHTRTPGIPLRWITAADILAQQALLRHPDFVVARMKGQYWQ
                     VREKVFDYEGRFRRAHELRG"
     gene            15217..15501
                     /gene="rplY"
                     /locus_tag="JN125_001808"
     CDS             15217..15501
                     /gene="rplY"
                     /locus_tag="JN125_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000494192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25"
                     /protein_id="HAY8871610.1"
                     /translation="MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDH
                     DKVINMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA"
     gene            complement(15640..16647)
                     /gene="yejK"
                     /locus_tag="JN125_001809"
     CDS             complement(15640..16647)
                     /gene="yejK"
                     /locus_tag="JN125_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein YejK"
                     /protein_id="HAY8871611.1"
                     /translation="MSLDINQIALHQLIKRDEQNLELVLRDSLLEPTETVVEMVAELH
                     RVYSAKNKAYGLFSEESELAQTLRLQRQGEEDFLAFSRAATGRLRDELAKYPFADGGF
                     VLFCHYRYLAVEYLLVAVLSNLSSMRVNENLDINPTHYLDINHADIVARIDLTEWETN
                     PESTRYLTFLKGRVGRKVADFFMDFLGASEGLNAKAQNRGLLQAVDDFTAEAQLDKAE
                     RQNVRQQVYSYCNEQLQAGEEIELESLSKELAGVSEVSFTKFAAEKGYELEESFPADR
                     STLRQLTKFAGSGGGLTINFDAMLLGERIFWDPATDTLTIKGTPPNLRDQLQRRTSGG
                     N"
     gene            16829..17056
                     /locus_tag="JN125_001810"
     CDS             16829..17056
                     /locus_tag="JN125_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YejL family protein"
                     /protein_id="HAY8871612.1"
                     /translation="MPQISRYSDEQVEQLLAELLNVLEKHKAPTDLSLMVLGNMVTNL
                     INTSIAPAQRQAIANSFARALQSSINEDKAH"
     gene            17076..18836
                     /gene="pbgA"
                     /locus_tag="JN125_001811"
     CDS             17076..18836
                     /gene="pbgA"
                     /locus_tag="JN125_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin transport protein PbgA"
                     /protein_id="HAY8871613.1"
                     /translation="MVTHRQRYREKVSQMVSWGHWFALFNILLSLVIGSRYLFIADWP
                     TTLAGRIYSYVSIIGHFSFLVFATYLLILFPLTFIVGSQRLMRFLSVILATAGMTLLL
                     IDSEVFTRFHLHLNPIVWQLVINPDENEMARDWQLMFISVPVILLLELVFATWSWQKL
                     RSLTRRRRFARPLAAFLFIAFIASHVVYIWADANFYRPITMQRANLPLSYPMTARRFL
                     EKHGLLDAQEYQRRLIEQGNPDAVSVQYPLSELRYRDMGTGQNVLLITVDGLNYSRFE
                     KQMPALAGFAEQNISFTRHMSSGNTTDNGIFGLFYGISPSYMDGILSTRTPAALITAL
                     NQQGYQLGLFSSDGFTSPLYRQALLSDFSMPSVRTQSDEQTATQWINWLGRYAQEDNR
                     WFSWVSFNGTNIDDSNQQAFARKYSRAAGNVDDQINRVLNALLDSGKLDNTVVIITAG
                     RGIPLSEDEETFDWSHGHLQVPLVIHWPGTPAQRINALTDHTDLMTTLMQRLLHVSTP
                     ASEYSQGQDLFNPQRRHYWVTAADNDTLAITTPKKTLVLNNNGKYRTYNLRGERVKDE
                     KPQLSLLLQVLTDEKRFIAN"
     gene            18911..18987
                     /locus_tag="JN125_001812"
     tRNA            18911..18987
                     /locus_tag="JN125_001812"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:18945..18947,aa:Pro,seq:ggg)
     gene            complement(19090..>21447)
                     /gene="yejO"
                     /locus_tag="JN125_001813"
     CDS             complement(19090..>21447)
                     /gene="yejO"
                     /locus_tag="JN125_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311108.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter YejO"
                     /protein_id="HAY8871614.1"
                     /translation="NGGYQYIEMNGTAEYSVLNDGYQIVQMGGAANQTTLNNGVLQVY
                     GAANDPTIKGGRLIVEKYGITVLAAIEKGGLLEVKEGGLAIAVDQKAGGAIKASTRVM
                     EAFGTNRLGQFEIKNGIANNMLLENGGSLRVEENDFAYNTTVDSGGLLEVMDGGTATG
                     VDKKAGGKLIVSTNALEVSGTNSKGQFSIKDGVSKNYELDDGSGLIVMEDTQAIDTIL
                     DEHATMQSLGKDTGTKVQANAVYDLGRSDQNGSITYSSKAISENMVINNGRANVWAGT
                     MVNVSVRGNDGILEVMKPQINYAPAMLVGKVVVSEGASFRTHGAVDTSKADVSLENSV
                     WAIIADITTTNQNTLLNLANLAMSDANVIMMDEPVTRSSVTASAENFITLTTNTLSGN
                     GNFYMRTDMANHQSDQLNVTGQATGDFKIFVTDTGASPAAGDSLTLVTTGGGDAAFTL
                     GNAGGVVDIGTYEYTLLDNGNHSWSLAENRAQITPSTTDVLNMAAAQPLVFDAELDTV
                     RERLGSVKSVSYDTAMWSSAINTRNNVTTDAGAGFEQTLTGLTLGIDSRFSREESSTI
                     RGLFFGYSHSDIGFDRGGKGNIDSYTLGAYAGWEHQNGAYVDGVVKVDRFANTIHGKM
                     SNGATAFGDYNSNGAGAHVESGFRWVDGLWSVRPYLAFTGFTTDGQDYTLSNGMRADV
                     GNTRILRAEAGTAVSYHMDLQNGTTLEPWLKAAVRQEYADSNHVKVNDDGKFNNDVAG
                     TPGVYQAGIRSSFTPTLSGHLSVSYGNGAGVESPWNTQAGVVWTF"
BASE COUNT         5232 a         5529 c         5248 g         5438 t
ORIGIN      
        1 atgcggacaa gttaattgca cgttttgcta atccggcgct gaaacataag acctggcaaa
       61 tcgcaatgga tggtagccag aaattaccgc aacgtatgct ggcaggtatt cgcatacatc
      121 tggggcgcga aacggactgg tcgttgctgg cattaggcgt tgctggctgg atgcgttacg
      181 tcagcggcgt tgatgatgcc ggaaatgcca ttgatgttcg cgatccgctt agcgataaaa
      241 ttcgcgaact tgttgcgggc agcagcagtg aacaacgcgt aaccgccctg ctttccctgc
      301 gtgaagtttt cggtgatgat ctgccagata acccgcattt tgtgcaggcc atcgaacaag
      361 cctggcaaca aatcgtacaa ttcggcgcac atcaggcgct attaaacacc ctcaaaattt
      421 aacgatttct gcggttaaag cggatgaagc tcaccttcgt ccgctctccc cttctctttt
      481 ctgccttttt tagccaggat taacgctcag ttaacttacc agagtattgc ggagccgttg
      541 tgaccaggac caacctcatc accggttttc tcggcagcgg gaaaaccacg tcgattcttc
      601 atctgttagc ccataaagat cccaacgaaa aatgggcggt actggttaat gaatttgggg
      661 aagtcggaat tgatggtgct ttgctcgccg atagcggcgc attgctgaaa gagatccccg
      721 gcggctgcat gtgctgcgtt aatggtttac ccatgcaggt agggttgaat accttactgc
      781 gtcagggaaa accagaccgc ttgttgatag agccgaccgg gctgggccat ccgaaacaga
      841 tcctcgatct gttaaccgca ccagtctatg aaccgtggat agatctgcgc gccaccttgt
      901 gcattctcga tccacgcttg ctgctggacg aaaaaagcgc cagcaatgaa aacttccgtg
      961 accagctggc tgccgcagac atcattgtcg ccaataaatc cgaccgtgcg acgcccgaaa
     1021 gtgagcaagc gctacagcgt tggtggcagc aaaatggtgg cgatcgacaa ttaattcaca
     1081 gtgagcatgg gaaagttgac ggtcatcttc tggatttgcc gcgtcgcaat ttagccgagt
     1141 tgcccgccag cgccgcgcat tctcatcagc atgtcgtgaa aaaagggtta gcagcgttaa
     1201 gcctgccaga gcatcaacgc tggcgtcgca gtctgaacag cgggcaagga tatcaggcct
     1261 gcggctggat attcgacgct gatacggtat tcgacaccat tggcattctg gaatgggcgc
     1321 gacttgcacc ggtggaacgc gtcaaaggcg tgctgcgtat tcccgaaggg ctggtacgaa
     1381 tcaaccgtca gggcgatgac ctgcacattg aaacgcaaaa cgttgcgcca ccggacagcc
     1441 gtattgagct gatttccagc agcgaagctg actggaatgc cttgcagagc gcgctgttga
     1501 agcttcgttt agcgactacc gcgtaaggtt gcctgcgttt ttcagtaaga taattagaga
     1561 aaatatgatt aaaaatttgc cgcaaatagt gttgttgaat attgtcagcc tcgcgctgtt
     1621 tctttcctgg tatattcccg ttaatcatgg attatggttg ccgattgatg cggatatttt
     1681 ttatttcttt aatcagaaac tggtcgaaag taaggccttt ttatggctgg ttgcattgac
     1741 caacaatcgc gctttcgacg gttgttctct gctggcgatg ggaatgttga tgctgagttt
     1801 ctggctgaaa gaaaacgccc caggcagacg acgtatcgtg attattggtc tggtaatgct
     1861 attaactgca gtggtattaa accagctggg tcaggcatta attcctgtaa aacgggccag
     1921 cccaacattg acgtttacta atattaaccg cgtcagcgaa ctgctctctg tccccacgaa
     1981 agatgcctca cgagatagct ttcccggcga tcacggcatg atgctgctta ttttttcggc
     2041 attcatgtgg cgttatttcg gtaaagttgc aggtcttatc gcccttatta tttttgtggt
     2101 ttttgcgttt cccagagtaa tgattggcgc acactggttt actgacatca ttgtcggttc
     2161 gatgaccgtg atattgatcg gtttgccctg ggtgttgctg acgccattaa gtgatcgatt
     2221 aatcaccttt tttgacaaat cactaccggg aaaaaacaaa catttccaaa acaaataact
     2281 cacagtaatt aacatcatca ggtttatttt tatagtgagg ataatcctga tgatgcgcac
     2341 cgtgctttca tctatcgaac gcaaaaatca ttctctaagt aaatgaatgg attgcatgcg
     2401 tttcactcaa tcgtacttta attgaccaat cccgcttatt aactttctgt atcacttttt
     2461 cttataaaaa atcatgtaaa accgctcgcc aagaccgcac caatcgggta atctcgaact
     2521 cgttttgcct cggcggtaga ttatcctcac agcatataat tttgtgcgtt agtccacaga
     2581 tttggcctta aggaattgtt tcaacatgcc caggtaatta gtctcgtgtc gcttggcatt
     2641 tttttataac gatatttatc gttaaggact tcaagggaaa acaaacaaca tggtcaaatc
     2701 tcaaccgatt ttgagatata tcttgcgcgg gattcccgcg attgcagtag cggttctgct
     2761 ttctgcatgt agtgcaaata acaccgcaaa gaatatgcat cctgagacac gtgcagtggg
     2821 tagtgaaaca tcatcactgc aagcttctca ggatgaattt gaaaacctgg ttcgtaatgt
     2881 cgacgtaaaa tcgcgaatta tggatcagta tgctgactgg aaaggcgtac gttatcgtct
     2941 gggcggcagc actaaaaaag gtatcgattg ttctggtttc gtacagcgta cattccgtga
     3001 gcaatttggc ttagaacttc cgcgttcgac ttacgaacag caggaaatgg gtaaatctgt
     3061 ttcccgcagt aatttgcgta cgggtgattt agttctgttc cgtgccggtt caacgggacg
     3121 ccatgtcggt atttatatcg gcaacaatca gtttgtccat gcttccacca gcagtggtgt
     3181 tattatttcc agcatgaatg aaccgtactg gaagaagcgt tacaacgaag cacgccgagt
     3241 tctcagccgc agctaataaa ccgtttggat gcaatccctt ggctatcctg acgagttaac
     3301 tgaaagcact gcttaggcag tgcttttttg ttttcattca tcagagaaaa tgatgtttcc
     3361 gcgtcttgat ccaggctata gtccggtcat tgttatcttt taaatgttgt cgtaatttca
     3421 ggaaattaac ggaatcatgt tcatacgcgc tcccaattct ggacgtaagc tcctgcttac
     3481 ctgcattgta gcgggcgtga tgattgcgat actggttagc tgccttcagt ttttagtggc
     3541 ctggcataag cacgaagtca aatacgacac actgattatc gacgtacaaa agtatctcga
     3601 tacctatttt gccgacctga aatccactac tgaccggctt cagccgctga ccttagatac
     3661 ctgccagcag gctaaccccg aactgaccgc tcgcgcggcg tttagcatga atgtccgtac
     3721 gtttgtgctg gtgaaagata aaaaaacatt ctgttcatct gcgactggtg agatggacat
     3781 tccactcaat gaattgattc cggcactcga cattaataaa aacgtcgata tggcgatctt
     3841 acccggcacg ccgatggtgc cgaacaaacc cgcaatcgtc atctggtatc gcaacccttt
     3901 gctgaaaaat agcggtgtgt ttgccgctct gaatctcaac ctgacgcctt ctctctttta
     3961 tagttcacgg caggaagatt acgatggcgt cgccctcatt attggcaata ctgcgctatc
     4021 taccttttct tcacgtttga tgaacgttaa tgaattaacc gacatgccgg tccgtgaaac
     4081 taaaattgcg ggcattcctc tgaccgttcg gctttatgcg gatgactgga catggaacga
     4141 tgtgtggtac gcatttttac tgggcggcat gagtggaact gtcgttggcc tgctctgcta
     4201 ttacctgatg agcgtacgta tgcgccccgg cagagaaatc atgaccgcca tcaagcgcga
     4261 acaattttac gtggcgtatc aaccggtggt ggatacacaa gctttgcgag taacgggcct
     4321 ggaagtactg ctacgctggc ggcatcctgt cgcgggagaa attcccccgg atgccttcat
     4381 taactttgcc gaatcgcaaa agatgattgt gccgctgact cagcacctgt ttgagttaat
     4441 tgcccgcgat gccgcagaat tagaaaaagt gctgccagta ggcgtcaaat ttggtattaa
     4501 cattgcgccg gaccatctgc acagcgaaag ctttaaagca gatatccaga aactgctcac
     4561 ttccctgccc gcacaccatt tccagattgt gctggaaatt accgagcgcg atatgctgaa
     4621 agagcaagaa gccacacaac tcttcgcctg gctgcactcg gtcggcgtag aaattgctat
     4681 tgatgacttc ggcaccgggc acagcgcgct tatctatctt gagcgtttta cgctcgatta
     4741 tctgaaaatt gaccgtggat ttatcaacgc catcggtacg gaaacgatca cttcacccgt
     4801 acttgacgcg gtgctgacgc tggcgaaacg cctcaatatg ctgacggttg ctgaaggggt
     4861 cgaaacgccg gaacaggcgc gatggctaag cgaacgcggc gttaatttca tgcaaggcta
     4921 ctggattagt cgcccgttac cgctggacga ttttgttcgc tggctgaaga aaccgtatac
     4981 gccgcagtgg taaggtgtgc ttacgtccct tattattcat agtgaaagca tgccggattg
     5041 cggctaatga tgagtaaaag gaaatccgtt gcagatgatt gtgcgcatac tgctgctgtt
     5101 tatcgccctg ttcaccttcg gtgcgcaggc gcaggctatc aaggaaagct atgcctttgc
     5161 cgtgctgggc gaaccccggt acgcatttaa tttcaaccat tttgattatg tgaaccccgc
     5221 cgcgccaaaa ggtgggcaga taacgttgtc agccctcggt accttcgata atttcaaccg
     5281 ctatgcactg cgcggcaacc cgggcgcacg caccgagcag ttgtacgaca cgctatttac
     5341 gacttccgat gacgaaccag gcagttatta cccgctgatt gctgaaagtg cacgctatgc
     5401 tgacgattat tcctgggtgg aggtcgctat taatccgcgc gcccgttttc atgatggttc
     5461 gcccattact gcccgcgatg tagagtttac ttttcaaaaa tttatgaccg aaggcgtgcc
     5521 gcaatttcgt ctggtctaca aaggcaccac cgtcaaagcc attgcaccgt taaccgtgcg
     5581 cattgagtta gctaaacccg gcaaagaaga tatgctgagt ctgttttcgc tgccggtatt
     5641 tccagaaaag tactggaagg atcacaaact tagcgacccg ctcgccacgc ctccgcttgc
     5701 cagtggtccg taccgcgtta cgtcctggaa aatggggcaa aatattgtct attcccgtgt
     5761 gaaagattac tgggcagcaa acttaccggt aaaccgtgga cgctggaatt tcgacaccat
     5821 tcgctacgat tattacctcg atgataatgt cgcctttgaa gcgtttaaag caggtgcctt
     5881 tgatttgcgt atggaaaacg acgctaaaaa ctgggccacg cgttataccg gtaaaaattt
     5941 cgataaaaaa tacatcatca aagatgagca aaagaacgaa tcagcccagg atacgcgctg
     6001 gctggcgttt aatatccaac gtccggtatt cagcgatcgc cgggtccggg aagcaatcac
     6061 tctcgccttt gactttgaat ggatgaacaa ggcgttgttt tacaacgcct ggagtcgcac
     6121 aaacagttat tttcagaata ccgaatacgc ggccagaaat taccccgacg ccgcggagct
     6181 ggtgcttctg gcaccaatga aaaaagatct accgccagaa gtcttcacac aaatctacca
     6241 gccgccggta tctaaaggcg atggctacga tcgtgacaac ctgttaaaag ccgacacact
     6301 tctcaacgaa gcgggctggg tgctgaaggg tcagcaacgc gttaatgcca caacgggtca
     6361 gccactcagc tttgaattat tgcttcccgc aagcagcaat agtcagtggg tattgccgtt
     6421 ccagcacagc ctgcaacggc tgggtatcaa catggacatt cgcaaggtgg ataactcgca
     6481 aatcaccaac cgcatgcgca gtcgcgacta tgacatgatg ccgcgcctat ggcgggcgat
     6541 gccgtggccc agttccgatt tacagatttc ctggtcatcg gaatatatca attccactta
     6601 taatgccccc ggcgtgcaaa gcccggttat cgactcactg atcaaccaaa ttattgccgc
     6661 gcagggaaat aaagaaaaat tattgccgtt ggggcgagca ctggatcgcg tattaacgtg
     6721 gaattattac atgctgccaa tgtggtacat ggcggaagac cgtctcgcct ggtgggataa
     6781 attctcccaa cccgctgtac gccctgttta cagactgggt atcgatacct ggtggtatga
     6841 cgttaataaa gcggccaaac tgccgtcagc caggcaacag ggagagtaga tgggcgctta
     6901 cctgattcgc cgtctgttgc tggtgatccc aacattatgg gcgattatca ccatcaactt
     6961 tttcatcgtg caaattgcgc ctggcggtcc ggtcgaccag gccatcgccg ccattgagtt
     7021 tggtaatgcc ggagtattac ccggcgcagg cggtgaaggt gttcgtgcca gccatgcgca
     7081 aacgggtgtc ggcaatatca gcgacagtaa ttaccgtggc ggacgcggat tagatccaga
     7141 agtgatcgct gagatcactc atcgctacgg ttttgataag ccgatccacg aacgttactt
     7201 caaaatgctc tgggactaca tccgctttga ttttggtgat agcctgtttc gcagcgcctc
     7261 ggtgctgacg ctgattaaag acagtctgcc ggtttccatc accctcggat tgtggagcac
     7321 gctgattatc tatctggtgt cgattccgtt aggcattcgc aaagctgttc ataatgggag
     7381 ccgctttgac gtctggagta gcgcatttat cattatcggc tacgccattc cggccttttt
     7441 gtttgccatc ctgctgattg tcttcttcgc gggcggcagc tatttcgacc tgttccctct
     7501 acgcggcctg gtttccgcta actttgattc gctgccgtgg tatcagaaaa tcaccgatta
     7561 tctgtggcat atcacgctgc cggtgctggc gacggtgatt ggtggctttg cggcgctgac
     7621 catactgaca aaaaactcat tccttgatga agtgcgcaag caatacgtgg tgaccgcgcg
     7681 tgcgaaaggg gtaagtgaaa aaaatattct ctggaaacat gtgttccgca acgccatgct
     7741 gctggtgatt gccggttttc cggcgacgtt tatcagcatg ttttttaccg gctcgctgct
     7801 gattgaggtg atgttttcac tcaatggtct gggcttactg ggctacgaag cgaccgtctc
     7861 gcgcgattat cctgtaatgt ttggtacctt gtatattttc accctgattg gcctgctgct
     7921 gaatattgtc agtgatatca gctatacgct ggttgatccg cgtattgatt ttgagggacg
     7981 ttaatgtcgc gactcagccc cgtcaatcag gcccgttggg cgcgttttcg tcataaccgt
     8041 cgcggctact ggtcgttatg gattttcctc gtcttgtttg gtttgagttt gtgttctgag
     8101 cttatcgcca acgataaacc gttgctggta cgttatgacg gcagttggta tttcccgttg
     8161 ttgaaaaact acagcgaaag cgattttggc ggcccgctgg caagtcaggc tgattatcag
     8221 gacccgtggc tgaaacaacg gctggaaaat aacggctggg tactgtgggc accgattcgc
     8281 tttggtgcta ccagtatcaa ctttgctacc gataagccct tcccttctcc accctcccgg
     8341 caaaactggc tgggaacgga tgccaacggc ggcgatgtgc tggcacgcat tctctatggc
     8401 acgcggatct cggttctgtt tggcctgatg ctgactctct gttccagcgt gatgggcgtg
     8461 ctggcggggg cgctacaagg ctattacggc ggtaaagtcg atctctgggg acaacgcttt
     8521 attgaagtat ggtcggggat gccgacgctg tttttgatta ttttactttc cagcgtcgta
     8581 cagcctaact tctggtggct gctggcaatt actgtcttgt ttggctggat gagtctggtc
     8641 ggcgtggtgc gggcggagtt tttacgtact cgtaatttcg actacattcg tgcggcgcag
     8701 gcgcttggcg tcagcgatcg cagtatcatc ctgcgtcata tgttgcctaa tgccatggtc
     8761 gcgaccctca cctttttacc gtttatttta tgtagttcga tcaccaccct gacctcactc
     8821 gatttcctcg gcttcggtct gcagctcggt tcaccgtcac tcggtgaact gctgttacaa
     8881 gggaaaaata accttcaggc tccgtggctt gggatcaccg ccttcttgtc ggtggcgata
     8941 ttattgtctt tgctgatctt tattggtgaa gccgtccgcg acgcatttga tcctaataag
     9001 gcggtgtagc atgacgcaaa ctctgttagc gattgaagat ttgtcggtgg gttttcgcca
     9061 tcagcaaacc gtacgtacag tagtcaatga tgtttcacta cagattgagg ctggcgaaac
     9121 gctggcgctg gtgggtgagt caggttcagg caaaagcgtt accgcgctgt caattttacg
     9181 cctgctccct tccccgccgg ttgaatatct ctccggcgat attcgttttc gtggcgaatc
     9241 gctgcttcat gccagcgatc aaacgttgcg cggtgtacgc ggtaataaga tcgccatgat
     9301 ttttcaagag ccgatggtgt cgttaaatcc attgcatacc ctggaaaaac agctttatga
     9361 agtgctttca ctccaccgcg ggatgcgtcg ggaagcggct cgaggcgaaa ttcttaactg
     9421 ccttgatcgc gttggtatcc gccaggcggc aaaacggctg acagattatc cgcatcagct
     9481 ctccggcggc gaacgccagc gggtgatgat tgcgatggcg ctgttaacgc gaccggaatt
     9541 attaattgcc gatgaaccga ccaccgcact ggacgtctct gtccaggcgc agattttaca
     9601 gctgttgcgc gaactgcaag gcgagctgaa tatgggcatg ctgtttatta ctcataacct
     9661 cagcattgtc agaaaactgg cccaccgcgt ggcggtaatg caaaacggtc gctgtgtcga
     9721 gcaaaattac gccgctacgc tatttgcctc acccactcat ccttacacac aaaagctact
     9781 caacagtgaa ccgtcaggcg atccagtgcc gttgccagaa cctgcctcaa cgttgctgga
     9841 tgttgaacag cttcaggttg ccttccccat tcgcaaaggg attttgaagc gcattgtgga
     9901 tcataatgtg gtggtgaaaa acatcagttt tacgctacga gcgggtgaaa cactgggttt
     9961 agtgggcgag tccggttccg ggaaaagtac gacgggactg gcgctgctgc gactgattaa
    10021 ttctcagggc agcatcatct ttgacggtca gccactgcaa aatttaaatc gccgccagct
    10081 gttacctatt cgtcatcgca ttcaggtggt atttcaggat ccaaactcct cgctcaaccc
    10141 acgactcaac gttttgcaga ttattgagga aggcttacgg gttcaccagc cgacgctttc
    10201 tgccgcacaa cgcgaacaac aagtgatagc cgtgatgcat gaagtgggat tagatcctga
    10261 aacacgccac cgttatccgg cggagttctc tggtggtcag cgacaacgta ttgcaattgc
    10321 cagggcatta attcttaagc cctcgctgat catacttgat gaaccgacat catcactcga
    10381 caaaacggta caggcgcaaa tattgacgct attgaaatca ttgcaacaaa agcagcaact
    10441 ggcctatttg tttatcagcc acgatttgca cgttgtccgc gcgttatgtc atcaggttat
    10501 cgtactgcga caaggggaag tagtggaaca aggaccgtgc gcgcgcgtgt ttgccgcacc
    10561 gcagcaggag tatacgcgtc agctactggc gttgagctga cgcttaaaaa ggattgtagt
    10621 ttgaaaaggg ttcggcaatt gccacaccaa aatttttcaa tcggcatgtt gcagcaaact
    10681 cgtcctggcg atttacaaac aggcacggct caccttcaca ctccagcacc gaacacggaa
    10741 cttcgatgtc gcttaacgcc tggcttagtt tgtacatcac cgaccatgca ttatcaccat
    10801 ccgggctaag caatttaagc gccaccaggc tgttgtcacc gcacggtcca ttttgcggaa
    10861 tcggttcaac cttcgaacct gcgaaaccag cagaccagcg aaagttctgc ggtagacgat
    10921 ggacgattga gagttgtaat gaagtcactt attttccccg gaagcacatt taattcacaa
    10981 tttgtttaca tcaattttaa cacatcatca acaatccgtc tttatacaga tcgtaaagat
    11041 tgatgcctcg cctgcgtggc ctctatggct ctgatttaag taatatctgc gggcgtggtc
    11101 acgtttgcgg ggctatatgt acccgtttct gcgatctaac tcaacctttt taactacaat
    11161 gatgtgactt tttacataaa ttgattttac ataaaataaa catatatcgg gggaatgata
    11221 gatttgtggt tgacatgcat caacaaagga agccttttag cttcctcgtt gtgcaataga
    11281 tcaccgtttt ttcggtcgac tggcgtacag acagaagaga atggagctgc ttgcgcagaa
    11341 tgcaattgac caaatcatcg gccatgcaga gttaaaggtc gcaagagaaa gcaatgcgcc
    11401 aacaattgcc cctatgccaa aacggaaggt tcctgccagc gaagatgccg ttcccgccat
    11461 atggggaaac tcatcaagaa tgaccgccat cgcattggat gacaccatcg acacacagcc
    11521 cacaaacgcc gcaacgccaa ccaccagcga ccagaatccc agccccagca gcgcactgat
    11581 gaccatccac gctgccataa taaattgtat ccacaacccc gagcggaaca tatttaacgc
    11641 gccaatgcgg cgaacgaagc ggctgttaaa gatggtcatc acgaacagga aaacaatgtt
    11701 tagtgcaaag taataaccaa agttttccgg cgcgacgtgg ttaatttcaa tgtagacaaa
    11761 cggtccggcg ctcaggaacg agaacattcc ggcaaagctg aaaccgctgg ccagcatata
    11821 actcaggaca cgcttatgac ggaacagcgc cgcaaagtta ccaatagtag tacgaatgtg
    11881 aaaaggctgg cgacgctccg gtggtaaggt ttctttgatc agaaagaaga tcattgccga
    11941 agccagaatc gccgccacgg cgaggatcca gaagatgtaa tgccagctca gccacaccag
    12001 cacccagccg ccaactatcg gtgccatcag cggtgcaatg gtcgtcacca gcatgacacc
    12061 gcgagaactc ttctttcggg tagatatcac gcatcaaagc gttgataacc atgctggccg
    12121 cagccgcagc cagcccgtgg aaaaaacgca tcacaatcag ctgatcgatg gtttgtgcca
    12181 acgcacacgc caccgcggcg gcggcaaaca ccagcgtacc gccgagcacc accggcttac
    12241 gcccgaagct gtctgccatc ggcccgtaga ttaactgccc caacgcaaag cccagaatat
    12301 aagtactgag ggtcatctgc gtactgcccg ccggtacgcc aaactgcgct gaaattaccg
    12361 gtagcgcggg cagatacata tcaatcgaca gcggcatcaa catggccagc aggccaagga
    12421 taaaaacaat agcaaacgac gaatgctgtc gggtggtcac aacgggctcc tgaaagtcat
    12481 tgaaaagtta gacgacgctg gcaatttctt cttcagttaa cggacgatat tcaccggggg
    12541 ctaaatcagc atccagcgta ataccgccaa tacgttcacg atgcagctca accacgtggt
    12601 tacccacggc ggcgaacatg cgtttcacct gatgataacg cccttcgctg atggtcagac
    12661 gaacctgcgt tggggtaatc acttccagca ccgcaggctt agtgagatct ttttcgttat
    12721 gcagctgcac gcctttagca aattgctctg ccgtatcgtc agctacaggt gattccagtg
    12781 tcaccagata ggtcttctcg caatgatggc gcggagaagt aatgcggtgc gaccactgac
    12841 catcatcagt catcagcacc agaccggtgg tatcgatatc cagacgtcct gcggcgtgca
    12901 gtttccaggc taccggttca tccagaaaat agagcaccgt tgggtgatca gggtcgtccg
    12961 tggagcaaac atagccctga ggcttattga gcatgaagta acgtggacca tgttgctgcg
    13021 ccagcgggtt gccatcgtaa gcgacatcat gttcaggaag cagtttgaac gctgcattac
    13081 gaacaatttc gccatcgacg gtgacacgat tgccgcggat ttcacgcccg gcaatagcac
    13141 ggctaacgcc gagttgctgt gcgataaatt tatcaagtcg catgtgtgtg attttgcctg
    13201 taaaaacgga ggtcgggcat tgacccgaaa atctgaactg ttgtctgccc agtatagcgg
    13261 tctaataaca tccctcaagg gaaaaagatc catggcatac tattagcaga ataatctacc
    13321 tacgcgagac catgattttt acactccgcc catatcagca agaagccgtg gatgccacgc
    13381 tcaaccattt tcgtcgtcat aaaacccctg ccgttatcgt gctgcccacc ggcgcaggta
    13441 aaagcctggt gattgccgaa ctggcacggc tggcgcgtgg tcgtgttctg gtgctggcac
    13501 acgtcaaaga actggtggcg caaaaccatg caaagtatca ggcgctgggg ctggaagccg
    13561 atatttttgc cgctgggtta aagcgcaaag agagccacgg taaagtggta tttggcagcg
    13621 tgcagtcggt cgctcgtaat cttgatgcct ttcagggtga attttcgctg ttgattgtcg
    13681 atgaatgcca ccgtattggt gacgatgaag agagccagta tcagcaaatc ctcactcacc
    13741 tgactaaagt gaatccccac ttacgcctgc tggggctgac tgccacgcct tttcgattgg
    13801 gcaaaggctg gatctaccag ttccattatc acggcatggt acgcggcgat gagaaagccc
    13861 ttttccgtga ctgcatttat gagctgccgc tgcgttatat gattaaacac ggctatctga
    13921 cgccgccaga acgactggat atgccagtag tgcaatacga tttcagccgc ttgcaggcac
    13981 agagtaacgg gctgttcagc gaagctgatc tcaaccgtga gctgaaaaaa cagcaacgca
    14041 ttacgccaca tatcatcagc cagatcatgg agttcgccga aaagcgcaaa ggggtaatga
    14101 ttttcgccgc caccgttgaa cacgcaaaag agattgtggg attactgcct gccgaagatg
    14161 cagcactgat tactggcgac acccccggcg ctgagcgcga tgtgttaatt gaagatttta
    14221 aagcccagcg ttttcgctat ctggtcaacg tcgcggtact gaccaccgga tttgacgccc
    14281 cgcacgtcga tcttatcgcc attctgcgtc ctaccgaatc agtgagtctt taccaacaaa
    14341 ttgtcgggcg cggtctgcgt ctcgctcctg gcaagactga ttgcttaatt cttgattatg
    14401 cgggtaatcc tcacgacctc tacgcgccgg aagttggtac accgaaaggc aaaagtgaca
    14461 acgtcccggt acaggttttc tgccctgcct gcggttttgc caacaccttt tgggggaaaa
    14521 cgaccgccga cgggacattg attgaacact ttggtcgtcg ctgtcaggga tggtttgaag
    14581 atgacgacgg ccatcgcgaa cagtgtgact tccgtttccg ttttaaaaat tgcccgcaat
    14641 gtaacgcgga aaacgatatt gccgcccgcc gctgccgcga atgtgacacg gtactggttg
    14701 atccggatga tatgttaaaa gcggcgctac gactgaaaga cgcgctggta ttacgctgta
    14761 gcggcatgtc tttacagcat gggcacgacg agaaaggcga atggttgaaa atcacctatt
    14821 acgatgaaga cggcgcggat gtgagtgagc gtttccgtct gcaaacgccc gcccagcgaa
    14881 ctgccttcga gcagcttttt atccgcccgc atacgcgcac accgggcatc cctctgcgct
    14941 ggatcaccgc cgccgatatc ctcgcccagc aagccttact gcgacatccg gattttgtcg
    15001 tcgcccgcat gaaaggtcag tactggcagg tgcgtgaaaa agtgttcgat tacgaaggtc
    15061 gttttcgtcg ggcgcacgaa ttacgcggtt aatggtagtt ttgattgatg tataaggcga
    15121 ttgagtatag aatctcgccc gcttttgcat acgcaaagca gatcacttac ctgttgctgg
    15181 gtcgcctgta gcaggattaa tttaagagag aaagaaatgt ttactatcaa cgcagaagta
    15241 cgtaaagagc agggtaaggg tgcgagccgc cgcctgcgtg ccgctaacaa gttcccggca
    15301 atcatctacg gtggcaaaga agcaccgctg gctatcgagc tggatcacga caaagtcata
    15361 aacatgcaag ctaaagctga attctacagc gaagttctga ccatcgttgt tgacggtaaa
    15421 gaaatcaaag ttaaagctca ggacgtacag cgtcacccgt acaaaccgaa gctgcagcac
    15481 atcgacttcg ttcgcgctta attgctgaat aagttgtaaa aaaccccgct ccggcggggt
    15541 tttttgtatc tgcagattat gcctgattac ggtattgcta ttttttgcag gccagataag
    15601 gcgttcacgc cgcatctggc attcagaaca caaaaccgat taattgccgc cagacgtccg
    15661 gcgctgcaat tggtcgcgca aattcggcgg cgtgccttta atggtcaaag tatcggttgc
    15721 tggatcccag aagatgcgtt cacctaacag catcgcatca aagttaatag tcaagccacc
    15781 gccgctaccg gcaaacttcg tcaactgacg cagtgtgcta cggtctgccg ggaagctctc
    15841 ttccagttcg tagccttttt cagccgcaaa cttcgtgaag ctcacttcgc ttacgcctgc
    15901 cagctctttc gacagcgatt ccagttcgat ctcttcgcct gcctgcagct gctcattaca
    15961 gtagctataa acctgctggc gcacgttctg tcgctctgct ttatccagtt gtgcttcggc
    16021 agtgaaatca tcaaccgctt gcaacagccc acggttttgc gctttcgcgt tcaatccttc
    16081 gctggccccg aggaaatcca taaagaaatc cgccactttg cgccctactc gccctttcag
    16141 gaaagtgaga tagcgggtgg actctggatt ggtttcccat tcggttaaat cgatacgcgc
    16201 aacaatatcc gcatgattga tatcaagata atgggttggg ttgatgtcga gattttcgtt
    16261 aacgcgcata ctgctcaggt tgctcagaac tgccaccagc agatactcca ccgccagata
    16321 acggtagtgg caaaacagca cgaatccacc gtcagcaaaa ggatatttcg ctaattcgtc
    16381 acgcaggcgc ccggttgccg cgcggctaaa tgccagaaag tcctcttcgc cctgacgctg
    16441 taagcgcagc gtctgcgcca gttcactctc ttcgctaaac aagccgtaag ctttattttt
    16501 ggcgctatag acccgatgca gttctgccac catctcaacg acggtttctg tcggttccag
    16561 caatgaatcg cgcaacacca gctcaaggtt ctgctcatca cgcttgataa gctggtgcag
    16621 agcaatctgg ttgatatcca gactcatgat aaactctcct ttaagaccgg gcggtattca
    16681 accaccgccg gttaagcgac gcaataaaag atggcggtca ttttacagaa ggcagcgtaa
    16741 cgagaatgat ttaacgcata aaaaagcaga aaaaaaaccg ttgctacggt aatatgttgc
    16801 cctttcatca actaactgat ttcgatttat gccacaaatt tcccgctaca gtgatgaaca
    16861 ggttgaacaa ttgctcgcag agctgctcaa cgtactggaa aaacataagg ctccgaccga
    16921 cctttccctg atggtgttag gcaacatggt cactaacctt atcaacacca gcattgcccc
    16981 ggcccaacgc caggcaattg ccaactcttt tgcccgcgcc ttacagtcct ctatcaacga
    17041 agacaaagcg cactaaggga aacagataac aggttatggt aactcatcgt cagcgctacc
    17101 gtgaaaaagt ctcccagatg gtcagttggg ggcactggtt tgcactgttc aatattctgc
    17161 tttcgctcgt cattggcagc cgttacctgt ttatcgccga ctggccgaca acgcttgctg
    17221 gtcgcattta ttcctacgta agcattatcg gccatttcag cttcctggtg ttcgccacct
    17281 acttgctgat cctcttcccg ctgaccttta tcgtcggctc ccagaggctg atgaggtttt
    17341 tgtccgtcat tctggcaacg gcgggaatga cgctattact gatcgatagc gaagtcttta
    17401 ctcgtttcca tctccatctt aatcccatcg tctggcagtt ggttatcaac ccagacgaaa
    17461 atgagatggc gcgcgactgg cagctgatgt tcatcagcgt gccggttatt ttattgcttg
    17521 aactggtgtt tgcgacgtgg agctggcaaa agctgcgcag cctgacgcgt cgtcgacgct
    17581 tcgcgcgccc gctggccgca ttcttattta tcgcctttat cgcctcgcat gtggtgtata
    17641 tctgggccga tgccaacttc tatcgcccga tcaccatgca gcgcgctaac ctgccgcttt
    17701 cgtacccgat gacggcgcga cgtttccttg agaagcatgg cctgcttgat gcgcaggagt
    17761 atcaacgccg tcttattgag caaggtaatc cagacgccgt ttccgtacag tatccgttaa
    17821 gcgaactgcg ctatcgcgat atgggcaccg ggcagaatgt gctgttgatt actgtcgatg
    17881 gcctgaacta ctcacgcttc gagaagcaga tgcctgcgct ggcaggtttt gctgagcaaa
    17941 atatttcgtt cacgcgccat atgagctccg gcaacactac agacaacggc atctttggcc
    18001 tgttctatgg catctcgccg agctatatgg acggcattct gtcgacccgt acccctgcgg
    18061 cgttaattac tgcgcttaat cagcaaggct atcagctggg attattctcg tcagatggct
    18121 ttaccagtcc gctgtatcgc caggcattgt tgtcagattt ctcgatgccg agcgtacgca
    18181 cccaatccga cgagcagacc gccacgcagt ggatcaactg gctgggccgc tacgcacaag
    18241 aagataaccg ctggttctcg tgggtctctt tcaatggcac taacattgac gacagcaatc
    18301 agcaggcatt tgcacggaaa tatagccggg cggcaggcaa tgtcgatgac cagatcaacc
    18361 gcgtgctcaa tgcactgctt gattctggca aactggacaa tacggttgtg attatcactg
    18421 ccggtcgggg tattccgctg agcgaagacg aagaaacctt tgactggtcc cacggtcatc
    18481 tgcaggtgcc attagtgatt cactggccag gcacgccggc gcagcgtatt aatgcgctga
    18541 ctgatcatac cgatctgatg acgacgctga tgcaacgcct gctacatgtc agcacacctg
    18601 ccagcgaata ttcgcaaggt caggatttgt tcaaccctca acgccgtcat tactgggtca
    18661 ctgcagcgga taacgatacg ctggcaatta ccaccccgaa aaagacgctg gtgctgaaca
    18721 ataacggtaa ataccgcact tacaacttac gtggtgaaag agtgaaagat gaaaaaccac
    18781 agttaagttt gttattgcaa gtgctgacag acgagaagcg ttttatcgct aactgattaa
    18841 ttataaatca gttagcgaaa tatcttactt gcaatcggtg tggaaaacgg tagtattagc
    18901 agccacgagt cggcacgtag cgcagcctgg tagcgcaccg tcatggggtg tcgggggtcg
    18961 gaggttcaaa tcctctcgtg ccgaccaaaa atcccaagaa aaaaccaacc tttacggttg
    19021 gtttttttat atctgcaatt aatttgataa acagaccgtg acacatcaca gcctgtttat
    19081 tttctgttat cagaacgtcc agaccactcc cgcctgagta ttccacggcg attctacccc
    19141 tgcgccattg ccatagctga ctgacaaatg accgcttaac gtcggggtaa acgatgacct
    19201 tatcccagcc tgataaacgc caggggttcc agccacatca ttattaaatt tgccatcgtc
    19261 attaactttc acatggttag aatcggcgta ttcctgacgt acggcggctt tcagccaggg
    19321 ttccagcgtc gtaccatttt gcaggtccat gtgatagctt accgccgttc ccgcttcagc
    19381 gcgtaatatc cgggtatttc ccacatcagc gcgcatgccg tttgataacg tgtagtcctg
    19441 accatctgtg gtaaagccgg taaaggccag atagggtcta acactccaca atccgtcaac
    19501 ccaacggaac ccgctctcaa catgagcacc cgcgccgtta ctattgtaat cgccaaacgc
    19561 tgttgcccca ttactcatct tgccatggat ggtgttggca aaacggtcaa ctttcaccac
    19621 cccatcaaca taggcaccgt tctgatgctc ccaaccggca taagccccca gggtatagct
    19681 atcgatatta ccttttccgc cgcgatcaaa accaatatca gaatgagagt aaccaaagaa
    19741 caagccgcga attgtactgc tttcttcacg ggagaaacgg ctatcgatac cgagcgtcag
    19801 gcccgtcaat gtttgctcaa aaccagctcc cgcatcagtg gtcacgttgt tgcgggtgtt
    19861 aattgccgaa ctccacatcg ccgtatcgta actaacgctt tttacgctac caagacgctc
    19921 acgcacggtg tccagttctg catcaaatac cagcggttgt gcggccgcca tattcagcac
    19981 atcagtggtt gaaggggtaa tttgcgcgcg attctctgcc aaactccagc tatggttgcc
    20041 attatccagc aaggtatatt catacgtacc gatatcaaca acgcctccgg cattgcccaa
    20101 cgtaaatgca gcatcaccgc cgcccgttgt taccagtgta aggctatctc ctgctgccgg
    20161 gctggcaccg gtgtccgtca cgaatatttt gaaatcacct gttgcctgac cggtgacgtt
    20221 gagctgatcg ctctgatgat tagccatatc ggtacgcata taaaaattgc cgtttcccga
    20281 cagggtattg gtggtcaacg taatgaaatt ttccgcactt gccgtcactg atgaacgagt
    20341 cactggctca tccatcataa tcacatttgc gtcagacatc gcaaggttgg ctaagttgag
    20401 gagggtgttt tggttcgtcg tagtgatatc ggcaatgatg gcccatacgc tattttcgag
    20461 cgaaacgtcc gctttgctgg tatccacggc accatgcgtt ctaaaagaag cgccctcaga
    20521 aaccactacc ttacccacca acatagcggg tgcataattt atttgcggct tcatgacctc
    20581 aagaatgcca tcattccctc tgactgacac gttaaccatt gtgccagccc agacattagc
    20641 gcggccattg ttgataacca tattttcaga gatggcttta gaggaatacg tgatacttcc
    20701 attctggtct gatcgaccga gatcatatac cgcatttgcc tgcactttcg taccagtatc
    20761 ctttcccagc gattgcatag tggcatgctc atcaaggata gtatcaatgg cctgcgtgtc
    20821 ctccataaca atgagcccgg aaccatcatc cagttcataa ttttttgaca caccatcttt
    20881 tatactaaat tggcctttac tgtttgtacc actcacttcc agcgcattcg ttgagacaat
    20941 taattttccg cctgcttttt tatcaacgcc agttgcagtc ccgccatcca taacctccag
    21001 taagccgcca ctatctacag tagtattata agcgaagtca ttttcttcaa ctcgcaaact
    21061 tccgccgttt tccaacagca tattgttagc aataccattc ttgatttcga actgaccgag
    21121 acggtttgtt ccgaatgcct ccatgacccg cgtgcttgct ttaatagcac cgcctgcttt
    21181 ctgatctacc gcaatcgcta atcccccctc tttaacctcc agtaatcctc ccttttcgat
    21241 agcggcaagg acggtaatcc catatttttc aacgattaag cgcccgcctt taatcgtggg
    21301 atcattcgct gcgccataaa cctgtagcac accattattg agggtagtct ggtttgccgc
    21361 gccacccatt tgaacaattt gataaccgtc atttaatact gagtattctg cggtaccatt
    21421 catttcaatg tactgatacc ctccgtt
//
LOCUS       DADMHM010000056        21162 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.057, whole genome shotgun sequence.
ACCESSION   DADMHM010000056 DADMHM010000000
VERSION     DADMHM010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 21162)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21162)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21162
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.057"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            40..969
                     /gene="aaeR"
                     /locus_tag="JN125_001814"
     CDS             40..969
                     /gene="aaeR"
                     /locus_tag="JN125_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator AaeR"
                     /protein_id="HAY8871615.1"
                     /translation="MERLKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDEL
                     QVKLLNRSTRSIGLTEAGRIYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTM
                     AQNVLAGLTAKMLKEYPGLSVNLVTGIPAPDLIADGLDVVIRVGALQDSSLFSRRLGA
                     MPMVVCAAKSYLTQYGIPEKPADLSSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRF
                     VTNDPMTLVRWLTAGAGIAYVPLMWVINEINRGELEILLPRYQSDPRPVYALYTEKDK
                     LPLKVQVVINSLTDYFVEVGKLFQEMHGRGKEK"
     gene            complement(1097..2542)
                     /gene="tldD"
                     /locus_tag="JN125_001815"
     CDS             complement(1097..2542)
                     /gene="tldD"
                     /locus_tag="JN125_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metalloprotease TldD"
                     /protein_id="HAY8871616.1"
                     /translation="MTLNLVSEQLLAANGLKHQDLFAILGQLAERRLDYGDLYFQSSY
                     HESWVLEDRIIKDGSYNIDQGVGVRAISGEKTGFAYADQISLLALEQSAQAARTIVRD
                     SGDGKVQTLGAVGHSPLYTSVDPLQSMSREEKLDILRRVDKVAREADKRVQEVTASLS
                     GVYELILVAATDGTLAADVRPLVRLSVSVLVEEDGKRERGAGGGGGRFGYEFFLADLD
                     GEVRADAWAKEAVRMALVNLSAVAAPAGTMPVVLGAGWPGVLLHEAVGHGLEGDFNRR
                     GTSVFSGQVGELVASELCTVVDDGTMVDRRGSVAIDDEGTPGQYNVLIENGILKGYMQ
                     DKLNARLMGMTPTGNGRRESYAHLPMPRMTNTYMLPGKSTPQEIIESVEYGIYAPNFG
                     GGQVDITSGKFVFSTSEAYLIENGKVTKPVRGATLIGSGIETMQQISMVGNDLKLDNG
                     VGVCGKEGQSLPVGVGQPTLKVDNLTVGGTA"
     gene            complement(2698..6498)
                     /locus_tag="JN125_001816"
     CDS             complement(2698..6498)
                     /locus_tag="JN125_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709041.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA2 domain-containing protein"
                     /protein_id="HAY8871617.1"
                     /translation="MRRLPGILLLTGAALVVIAALLVSGLRIALPHLDAWRPEILNKI
                     ESATGMPVEASQLSASWQNFGPTLEAHDIRAELKDGGEFSVKRVTLALDVWQSLLHMR
                     WQFRDLTFWQLRFRTNTPITSGGGNDSLEASHISDLFLRQFDHFDLRDSEVSFLTPSG
                     QRAELAIPQLTWLNDPRRHRAEGLVSLSSLTGQHGVMQVRMDLRDDEGLLSNGRVWLQ
                     ADDIDLKPWLGKWMQDNIALETAQFSLEGWMTIDKGDVTGGDVWLKQGGASWLGEKQT
                     HTLSVDNLTAHITRENPGWQFSIPDTRITMDGKPWPSGALTLAWIPEQDVGGKDNKRS
                     DELRIRASNLELAGLEGIRPLAAKLSPALGDVWRSTQPSGKINTLALDIPLQAADKTR
                     FQASWSDLAWKQWKLLPGAEHFSGTLSGSVENGLLTASMKQAKMPYETVFRAPLEIAD
                     GQATISWLNNDKGFQLDGRNIDVKAKAVHARGGFRYLQPANDEPWLGILAGISTDDGS
                     QAWRYFPENLMGKDLVDYLSGAIQGGEADNATLVYGGNPQLFPYKHNEGQFEVLVPLR
                     NAKFAFQPDWPALTNLDIELDFINDGLWMKTDDVNLGGVRASNLTAVIPDYSKEKLLI
                     DADIKGPGKAVGPYFDETPLKDSLGATLQELQLDGDVNARLHLDIPLNGELVTAKGEV
                     TLRNNSLFIKPLDSTLKNLSGKFSFINGDLQSEPLTASWFNQPLNVDFSTKEGAKAYQ
                     VAVNLNGNWLPAKTGVLPAAVNEALSGSVAWDGKVGIDLPYHAGATYNVELNGDLNNV
                     SSHLPSPLAKPAGEPLPVNVKVDGNLSSFELTGQAGADNHFNSRWLLGQKLTLDRAIW
                     AADSKTLPPLPEQSGVELNMPPMNGAEWLALFQKGAAESVGGAASFPQHITLRTPMLS
                     LGNQQWNNLSIVSQPTANGTLVEAQGREINATLAMRNNAPWLANIKYLYYNPSVAKTR
                     GDSTPSSPFPTTERINFRGWSDAQIRCTECWFWGQKFGRIDSDLTISGDTLTLTNGLI
                     DTGFSRLTADGEWVNNPGNERTSLKGKLRGQKIDAAAEFFGVTTPIRQSSFNVDYDLH
                     WRKAPWQPDEATLNGIIHTQLGKGEITEINTGHAGQLLRLLSVDALMRKLRFDFRDTF
                     GEGFYFDSIRSTAWIKDGVMHTDDTLVDGLEADIAMKGSVNLVRRDLNMEAVVAPEIS
                     ATVGVAAAFAVNPIVGAAVFAASKVLGPLWSKVSILRYHISGPLDDPQINEVLRQPRK
                     EKAQ"
     gene            complement(6566..8035)
                     /gene="rng"
                     /locus_tag="JN125_001817"
     CDS             complement(6566..8035)
                     /gene="rng"
                     /locus_tag="JN125_001817"
                     /EC_number="3.1.26.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease G"
                     /protein_id="HAY8871618.1"
                     /translation="MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKG
                     RVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQD
                     LMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAE
                     YCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQR
                     VLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEI
                     QRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQ
                     LRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKR
                     TRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAE
                     ALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVMM"
     gene            complement(8025..8618)
                     /gene="yhdE"
                     /locus_tag="JN125_001818"
     CDS             complement(8025..8618)
                     /gene="yhdE"
                     /locus_tag="JN125_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphatase YhdE"
                     /protein_id="HAY8871619.1"
                     /translation="MTSLYLASGSPRRQELLAQLGVTFERIVTGIEEQRQPQESAQQY
                     VVRLAREKAQAGVAQTAQDLPVLGADTIVILNGEVLEKPRDAEHAAQMLRKLSGQTHQ
                     VMTAVVLADSQHILDCLVVTDVTFRTLTDEDIAGYVASGEPLDKAGAYGIQGLGGCFV
                     RKINGSYHAVVGLPLVETYELLSNFNALREKRDKHDG"
     gene            complement(8627..9115)
                     /gene="mreD"
                     /locus_tag="JN125_001819"
     CDS             complement(8627..9115)
                     /gene="mreD"
                     /locus_tag="JN125_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001487551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HAY8871620.1"
                     /translation="MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILL
                     YWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQ
                     QALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFA
                     VQ"
     gene            complement(9115..10200)
                     /gene="mreC"
                     /locus_tag="JN125_001820"
     CDS             complement(9115..10200)
                     /gene="mreC"
                     /locus_tag="JN125_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HAY8871621.1"
                     /translation="MKPIFSRGPSLQIRLILAVLVALGIIIADSRLGTFSQIRTYMDT
                     AVSPFYFVSNAPRELLDGVSQTLASRDQLELENRALRQELLLKNSELLMLGQYKQENA
                     RLRELLGSPLRQDEQKMVTQVISTVNDPYSDQVVIDKGSVNGVYEGQPVISDKGVVGQ
                     VVAVAKLTSRVLLICDATHALPIQVLRNDIRVIAAGNGCTDDLQLEHLPANTDIRVGD
                     VLVTSGLGGRFPEGYPVAVVSSVKLDTQRAYTVIQARPTAGLQRLRYLLLLWGADRNG
                     ANPMTPEEVHRVANERLMQMMPQVLPSPDAMGPKLPEPATGIAQPTPQQPTTGNAATA
                     PAANRSPQRATPPQSGAQPPARAPGGQ"
     gene            complement(10266..11309)
                     /locus_tag="JN125_001821"
     CDS             complement(10266..11309)
                     /locus_tag="JN125_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000913396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HAY8871622.1"
                     /translation="MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQD
                     RAGSPKSVAAVGHDAKQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNS
                     FMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATG
                     SMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERI
                     KHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALE
                     QCPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALE
                     MIDMHGGDLFSEE"
     gene            complement(11614..13554)
                     /gene="csrD"
                     /locus_tag="JN125_001822"
     CDS             complement(11614..13554)
                     /gene="csrD"
                     /locus_tag="JN125_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase E specificity factor CsrD"
                     /protein_id="HAY8871623.1"
                     /translation="MRLTTKFSAFVTLLTGLTIFVTLLGCSLSFYNAIQYKFSHRVQA
                     VATAIDTHLVSNDFSTLRPQITELMMSADIVRVGLLHGDKQVYTLARNGSYRPVGSSD
                     LFRELSVPLIKHPGMSLRLVYQDPMGNYFHSLMTTAPLTGAISFIIVMLFLAVRWLQR
                     QLAGQELLETRATRILNGERGSNVLGTIYEWPPRTSSALDTLLREIQNAREQHSRLDT
                     LIRSYAAQDVKTGLNNRLFFDNQLATLLEDQEKVGTHGIVMMIRLPDFNMLSDTWGHS
                     QVEEQFFTLTNLLSTFMMRYPGALLARYHRSDFAALLPHRTLKEAESIAGQLIKAVDT
                     LPNNKMLDRDDMIHIGICAWRSGQDTEQVMEHAESATRNAGLQGGNSWAIYDDSLPEK
                     GRGNVRWRTLIEQMLSRGGPRLYQKPAVTREGQVHHRELMCRIFDGNEEVSSAEYMPM
                     VLQFGLSEEYDRLQISRLIPLLRYWPEENLAIQVTVESLIRPRFQRWLRDTLMQCEKS
                     QRKRIIIELAEADVGQHISRLQPVIRLVNALGVRVAVNQAGLTLVSTSWIKELNVELL
                     KLHPGLVRNIEKRTENQLLVQSLVEACSGTSTQVYATGVRSRSEWQTLIQRGVTGGQG
                     DFFASSQPLDTNVKKYSQRYSV"
     gene            13706..14680
                     /locus_tag="JN125_001823"
     CDS             13706..14680
                     /locus_tag="JN125_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HAY8871624.1"
                     /translation="MQALLLEQQDGKTLASVQTLDESRLPEGDVTVDVHWSSLNYKDA
                     LAITGKGKIIRNFPMIPGIDFAGTVRTSEDPRFHAGQEVLLTGWGVGENHWGGLAEQA
                     RVKGDWLVAMPQGLDARKAIIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVG
                     STAVALLHKLGYQVVAVSGRESTHEYLKSLGASRILPRDEFAESRPLEKQVWAGAIDT
                     VGDKVLAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVDSVMTPPERRA
                     QAWQRLVADLPESFYTQAAKEISLSEAPNFAEAIINNQIQGRTLVKVN"
     gene            15658..16128
                     /gene="accB"
                     /locus_tag="JN125_001824"
                     /gene_synonym="fabE"
     CDS             15658..16128
                     /gene="accB"
                     /locus_tag="JN125_001824"
                     /gene_synonym="fabE"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HAY8871625.1"
                     /translation="MDIRKIKKLIELVEESGISELEISEGEESVRISRAAPAASFPVM
                     QQAYAAPMMQQPAQSNAAAPATVPSMEAPAAAEISGHIVRSPMVGTFYRTPSPDAKAF
                     IEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE"
     gene            16139..17488
                     /gene="accC"
                     /locus_tag="JN125_001825"
     CDS             16139..17488
                     /gene="accC"
                     /locus_tag="JN125_001825"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009483995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HAY8871626.1"
                     /translation="MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLL
                     ADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIF
                     IGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKA
                     SGGGGGRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADG
                     QGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFE
                     FLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHA
                     VECRINAEDPNTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYG
                     ENRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEKKLGLQEK"
     gene            complement(17580..18627)
                     /locus_tag="JN125_001826"
                     /pseudo
     CDS             complement(17580..18627)
                     /locus_tag="JN125_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000787050.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase family protein"
     gene            complement(18624..19586)
                     /locus_tag="JN125_001827"
     CDS             complement(18624..19586)
                     /locus_tag="JN125_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000048618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HAY8871627.1"
                     /translation="MSKVFTIGEILVEIMASKIGQPFDQPGIWNGPYPSGAPAIFIDQ
                     VTRLGVPCGIISCVGNDGFGDINIHRLAADGVDIRGISVLPLEATGSAFVTYHNSGDR
                     DFIFNIKNAACGKLSAQHVDENILKDCTHFHIMGSSLFSFHMVDAVKKAVTIVKANGG
                     VISFDPNIRKEMLDIPEMRDALHFVLELTDIYMPSEGEVLLLSPHSTPERAIAGFLEE
                     GVKEVIVKRGNQGASYYSANEQFHVESYPVEEVDPTGAGDCFGGAWIACRQLGFDVHR
                     ALQYANACGALAVTRRGPMEGTSRLAEIEAFIQRHDMSIREAAQ"
     gene            complement(19608..20597)
                     /locus_tag="JN125_001828"
                     /pseudo
     CDS             complement(19608..20597)
                     /locus_tag="JN125_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001525780.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
     gene            complement(20598..>21162)
                     /locus_tag="JN125_001829"
     CDS             complement(20598..>21162)
                     /locus_tag="JN125_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020245594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HAY8871628.1"
                     /translation="VLIDGKEVRITNPKQAIDHGIAFVTENRKEEGLVLMHDVNMNTH
                     HVAFQYNASRMGLINHRQEEAKTLQSIARMNTKVSSVHQAVGALSGGNQQKIVLSKWL
                     EKTPRILLLDEPTRGVDVGAKFEIYNVIRQLAAAGTAIILVSSELPEVMALSDRLVVM
                     RNKTIADIYSCENLTQTQVMTAATGVR"
BASE COUNT         5207 a         5778 c         5125 g         5052 t
ORIGIN      
        1 tattatgtga tctaaatcac ttttaagtca gagtgaataa tggaacgact aaaacgcatg
       61 tcggtgtttg ccaaagtagt tgaatttggc tcttttaccg ccgccgccag acagctacag
      121 atgagcgttt cgtccatcag tcagacggtg tcaaaactgg aagatgagtt gcaggtaaag
      181 ctgttaaacc gtagcacacg cagcattggc ctgaccgaag ccggtagaat ttactaccag
      241 ggctgccgtc gtatgcttca tgaagtgcag gatgttcatg agcaactgta tgccttcaat
      301 aacaccccca tcgggacgct acgcattggc tgttcttcaa ctatggcaca aaatgttctc
      361 gccgggctga cagccaaaat gctgaaagaa tacccaggtt tgagcgtcaa tctggttacc
      421 ggaattccag cccccgacct gattgccgac ggtctggatg tggtgatccg cgtcggcgcg
      481 ttgcaggatt ccagcctgtt ttcccgccgt cttggcgcga tgccaatggt ggtgtgcgcc
      541 gcgaaaagct atctcacaca atacggcata ccggaaaaac ccgccgattt aagtagccat
      601 tcatggcttg aatacagcgt gcggcccgac aatgaatttg aactgattgc accggaaggg
      661 atctcgactc gcctgatccc gcaagggaga tttgtgacta atgatccgat gacgctggtg
      721 cgctggctaa cggcgggtgc cgggatcgcc tacgtgccgc tgatgtgggt gatcaacgag
      781 atcaatcgtg gggagctgga gatcctgctg ccgcgttatc agtcagatcc acgcccggtt
      841 tatgcgttat ataccgaaaa agataagctg ccgctgaagg tacaggtcgt gatcaactcg
      901 ctgacggatt attttgttga ggtcggtaaa ttgtttcagg agatgcacgg gcgcgggaaa
      961 gagaagtaat tcatattgta ctgttacgtt ctacaaacct gtgccaacgg gttcccctca
     1021 ccctaacccc agaggagcga ggggaccgtt cgtgcatgta gaaagattaa ttatccttct
     1081 gaaaataatg aaattattac gcagtaccgc caacagtcag gttatcaact ttcagcgttg
     1141 gctggcccac gccaaccggc aaactttgcc cttctttacc gcagacacct acgccgttat
     1201 ccagtttcag gtcgttgcca accatcgaaa tctgctgcat ggtttcgata ccggaaccaa
     1261 tcaacgttgc gcctctcacc ggcttcgtta ctttaccgtt ttcaatcaga tatgcttctg
     1321 aagtggagaa aacgaatttg ccggaggtga tatccacctg accgccacca aagttcggtg
     1381 catagatacc gtactcaacg gattcaataa tttcctgcgg ggtcgattta cccggcagca
     1441 tataggtgtt ggtcatacgc ggcatgggca gatgggcgta ggattcacgg cgaccgttgc
     1501 cagtcggcgt catccccatc aaacgcgcgt tgagtttatc ctgcatgtag cctttcagaa
     1561 tgccgttctc aatcagcacg ttgtactggc ctggcgtacc ttcgtcatca atcgccaccg
     1621 aaccacggcg atcgaccatc gtgccgtcat caaccacggt acacagttct gaagccacca
     1681 gctccccgac ctgcccacta aatactgaag tgccgcggcg gttgaagtcg ccttccagac
     1741 cgtgacctac cgcttcatgc aacagcacgc ccggccaacc tgcgccaagt actaccggca
     1801 tggtgcccgc tggtgcagca acggcagaaa gattgaccag cgccatacgc actgcttctt
     1861 ttgcccatgc atccgcacgg acttcgccgt caagatcggc aaggaagaac tcataaccaa
     1921 aacgaccgcc accgccaccg gcaccgcgtt cgcgtttgcc atcttcttcg accagaacgc
     1981 tcacggaaag acgcaccagc ggacggacat ccgccgctag cgtgccgtcg gtggccgcaa
     2041 ccagaattaa ttcatagaca ccactgaggc tggcagtcac ttcctgtacg cgcttgtccg
     2101 cttcgcgagc aaccttatcg acgcgacgca ggatatccag cttctcttca cggctcatgc
     2161 tttgcagcgg atctaccgag gtatacaacg ggctatgccc taccgcgccc agcgtctgta
     2221 ctttgccatc accactatca cggacgatgg tgcgcgctgc ttgcgcactc tgttccagcg
     2281 ccagcaggct gatttggtca gcgtaagcaa atccggtttt ttcaccgctg attgcacgca
     2341 cgccaacgcc ctgatcgatg ttgtaagaac catctttaat aatgcggtct tctaaaaccc
     2401 aggattcgtg atagctcgac tgaaaataga gatcgccata atcaaggcga cgttcggcca
     2461 gttgaccgag gatcgcgaac aagtcctgat gtttcaggcc gttcgccgct agcaattgtt
     2521 cacttaccag gttaagagtc atcgtttttg ctactcgtta gttactgcag tagaggattt
     2581 tttacggctg ccggatgcgg cgtgaacgcc ctatccgacc tacggttatg ttctggctcg
     2641 ttggcctttg gcaacgatta tcatatgaga ttggggcaat tacgcgccct cgtcaaatca
     2701 ttgcgctttt tctttacgcg gttggcgcaa cacttcgttg atttgcggat cgtccagcgg
     2761 acccgaaatg tgatagcgca aaatggagac tttgctccac agcggcccca gcactttact
     2821 ggctgcaaat actgccgcgc caacaatggg gttaaccgca aaagccgcag ccacgcccac
     2881 cgtcgcagaa atctctggtg cgacaaccgc ttccatattc aggtcgcgac gtaccagatt
     2941 taccgaccct ttcatggcga tatccgcctc caggccatcc accagcgtgt cgtcggtgtg
     3001 cataacgccg tctttaatcc acgcggtgct gcgaatggag tcaaaataga acccttcgcc
     3061 aaaagtgtct ctgaaatcaa aacgcagctt acgcatcagg gcatcaacgc tcaataagcg
     3121 cagcaattgc ccggcatgtc cggtattgat ttcggtaatt tcgcctttac ccagttgagt
     3181 atgaatgatg ccattcaacg tcgcctcatc tggttgccag ggtgctttgc gccagtgtaa
     3241 atcgtaatcc acattaaatg acgactggcg tatgggcgtc gtgacaccaa aaaattctgc
     3301 ggcggcatca attttctgcc cgcgcagttt tcctttcagc gaggtacgtt cattccccgg
     3361 attattaacc cattcaccat cggcagtaag ccgcgagaaa ccagtatcaa tcagtccatt
     3421 ggtcagcgtt aacgtatcgc cagaaatggt gagatcactg tcaatacgac cgaatttttg
     3481 cccccagaac cagcactctg tgcatcgtat ttgtgcgtcc gaccagccac ggaagttaat
     3541 gcgctccgtt gtcgggaaag gtgatgacgg tgttgaatca ccacgagttt tcgccacgct
     3601 cgggttgtaa taaagatatt tgatattcgc cagccacggc gcgttattac gcatcgccag
     3661 cgtggcattg atttcacgcc cctgcgcctc aaccagggtg ccatttgccg tcggttgcga
     3721 aacaatactc aggttattcc attgctgatt tcccagtgac aacataggcg tacgtaacgt
     3781 tatgtgttgt gggaaactcg ctgcaccacc gacactctcc gcagcgcctt tctggaacag
     3841 ggccagccac tcggcaccat tcatcggcgg catattgagt tcaacgccac tttgttccgg
     3901 caacggcggg agcgttttac tgtctgccgc ccaaatagca cgatcgagcg tcagcttttg
     3961 accaagcaac cagcggctat tgaaatggtt atccgcacca gcctgtccgg ttaattcaaa
     4021 gctgctgaga ttgccatcaa ccttaacgtt taccggcagt ggttcacccg caggtttggc
     4081 taacggtgaa ggtaagtgac tgctcacatt attcagatcg ccgttcagct ctacgttata
     4141 ggtcgcgcca gcatgataag gcagatcaat gcccacttta ccatcccacg ccacgctgcc
     4201 actcaatgct tcgttcaccg ctgcaggcag aacgccggtt ttcgccggta gccagttacc
     4261 gttgaggttt accgcaacct ggtaggcttt tgccccttct ttggtggaaa aatccacgtt
     4321 caacggctga ttaaaccagc ttgctgtcag tggttcactt tgcagatcgc cattgataaa
     4381 gctgaattta ccgctcaaat ttttcagggt gctgtcgagt ggtttgataa acagactgtt
     4441 attacgcagc gtcacttcac ctttcgcggt taccagttcg ccgttcagcg ggatatcaag
     4501 atgtaagcga gcattcacat cgccgtcgag ctggagttct tgcagggtcg cacccagaga
     4561 atctttcagc ggtgtctcat caaagtaagg gccaacggct ttacccggac ctttaatgtc
     4621 agcgtcaatc agcagttttt ctttcgagta gtcagggatc actgcggtga gattactcgc
     4681 gcgcacgccg cccagattaa cgtcatcggt tttcatccat aaaccgtcgt taataaagtc
     4741 cagttcaata tcaaggttag ttaatgcagg ccagtccggc tggaaggcaa acttcgcgtt
     4801 acgcagcggc accagcactt caaactgacc ttcgttgtgt ttatagggga agagttgcgg
     4861 attgccacca taaaccagcg tcgcgttatc cgcttcaccg ccctgaatcg cgccacttaa
     4921 gtaatcaact aggtctttac ccatcaagtt ttccgggaaa tagcgccagg cttgtgaacc
     4981 atcatcggta ctgatgccag ccagaatacc cagccagggt tcatcgttag caggttgcag
     5041 gtaacgaaaa ccgccgcgcg catggacggc tttggcttta acgtcaatat tacgcccatc
     5101 cagctggaaa cctttgtcat tgttcagcca gcttatagtt gcctggccgt cggcgatttc
     5161 cagtggcgca cggaataccg tttcgtaagg catctttgcc tgcttcatcg acgcggtaag
     5221 caaaccattt tcaacgctgc cggaaagcgt cccggagaag tgttccgcac ccggtaataa
     5281 tttccattgc ttccaggcca gatcgctcca cgatgcctga aaacgggtct tgtctgccgc
     5341 ctgaagcggg atatccagcg ccagagtgtt aatcttgccg ctcggttgtg tggagcgcca
     5401 aacatcaccc agtgcaggtg aaagtttcgc ggccagcggg cgtatgccct ccaggcctgc
     5461 cagctccaga ttactggcgc gaatccggag ttcgtcactg cgtttattgt ctttgccgcc
     5521 aacgtcctgt tccggtatcc aggccagcgt caatgctccg ctcggccagg gtttgccgtc
     5581 catcgtgatc cgtgtatcgg gaatagagaa ctgccagccc ggattttcac gcgtaatatg
     5641 cgcggtcaga ttatccaccg acagcgtatg cgtttgcttc tcgcccaacc agctggcacc
     5701 gccctgtttc agccagacgt caccgccggt tacatcgcct ttgtcgatcg tcatccagcc
     5761 ttcaagggag aactgtgccg tttccagagc aatattgtcc tgcatccatt taccgagcca
     5821 cggcttcagg tcgatgtcat ccgcctgtag ccagacgcga ccattgctta acaacccctc
     5881 atcatcgcgc aaatccatgc gcacctgcat cacgccgtgc tgtccggtaa ggctggagag
     5941 gcttaccagg ccttccgcac ggtgtcgacg tggatcgttc agccaggtga gttgtgggat
     6001 cgccagctcg gcgcgctgac cggatggcgt cagaaaactg acttcactgt cgcggagatc
     6061 gaaatggtca aattgacgaa gaaacagatc gctgatgtga ctggcttcca ggctatcatt
     6121 accaccaccg ctggtgatag gagtgttggt gcgaaagcgc agctgccaga aagtgaggtc
     6181 gcgaaactgc cagcgcatat gtaacaagct ctgccagaca tccagcgcca gagtaacgcg
     6241 tttaaccgaa aattcgccgc catcttttag ttctgcacgg atgtcgtgtg cttcaagcgt
     6301 cgggccaaaa ttctgccagc tggctgagag ctgactggct tctaccggca tgccagtcgc
     6361 ggattctatt ttgttgagga tttccggacg ccaggcgtca agatgcggta aagcaatacg
     6421 caggccgcta accagcaggg ctgcgatcac aacgagcgcg gctccagtaa gcagtaaaat
     6481 ccccggcaat cgcctcaccc gtcactcctt gtctgctaaa aatgtgactc aaaaaccctt
     6541 tgccggatgg cggcccagca tctgtttaca tcattacgac gtcaaactgc tcctggttat
     6601 agagcggttc aatttgtact ttaacctgtt tgccaacgaa aatttccact tccgccagcg
     6661 agtgtgactc ttcgcctttc aaggcttcag ctactgccgg agaagcatag accaggaaac
     6721 ggtcggagtc gtaagcatgg tggacacgaa caatctcgcg catgatttca tagcataccg
     6781 tttccacggt tttcaccgtt ccgcgaccgt ggcaggttgg gcattcgtta cacagtacgt
     6841 gctcaatgct ttcgcgggtg cgtttacgcg tcatctccac cagccccagc gccgaaaaac
     6901 cattaacgct ggttttcacc cggtctttgc tcaacgcctg ctccagcgag tgcagcacgc
     6961 ggcggcggtg atcttcatta ttcatatcga tgaaatcaat aatgataatc ccacccagat
     7021 tacgcaaccg taactggcga gcgatagcct gcgtcgcttc aatattggta ttgaaaatgg
     7081 tgtcgtccag attgcgatga ccgacaaacg ctccggtatt gatgtccacg gtggtcatcg
     7141 cttcggtctg gtcgataatc agataaccac cggatttcag ttctactttg cgttccagcg
     7201 ctcgctggat ttcgttttcg acatcaaaga gatcgaaaat cggctggcgt ccggtgtaat
     7261 gctccagctt gctggtcatc tcgggaatgt actccgaggt aaactccagc aatgcttcgt
     7321 aagtcaggcg tgagtcaacg cgaatgcggt ccagttcggc gtcggcgaaa tcacgcagaa
     7381 cacgctgcgc cagcgccagt tcgccgtaca gctgataacg ggtctgcggg cgttttttac
     7441 gctccataac tttggtccag acgcgtttca gataagcggc atcggaggcc agttcagcct
     7501 cgccaacccc ttccgctgcg gtacggatga taaacccgcc ctgctcgtcg caatactctg
     7561 cgaccacttt tttcaggcgt tcacgttctg attcgctttc aatacgttgg gaaaccccaa
     7621 cgtgagaagc ccctggcata aacaccagat agcgagaagg cagcgtgata tcggtggtca
     7681 ggcgcgcacc tttagtgcca agcggatctt tcaccacctg caccatcaga tcttgcccct
     7741 gacgaaccag ttccgagatg tcgcgcaccg tgaattgctt ttgttcttca cccgccacac
     7801 attcggtgtg cggcatgata tcggatgcat gaagaaacgc ggctttatcc agcccaatat
     7861 ctacaaaagc cgcctgcata cccggaagta cacgacttac acgacccttg tagatattgc
     7921 ctactattcc gcgtcgcgcc tcacgttcaa tatgaatttc ctgcagaata ccgccatcaa
     7981 tatacgccac tcgcgtttcc gaaggcgtta cgtttactaa caattcagcc gtcatgttta
     8041 tcccttttct cacgcagtgc gttaaaatta cttaataatt catacgtttc aaccagcggt
     8101 aagccgacta cggcgtgata gctgccattt atcttcctga caaaacagcc acccagcccc
     8161 tgaataccgt atgcacctgc tttatctaac ggttcaccgc tggcgacata gcccgcgatg
     8221 tcttcgtctg ttaacgttct gaaagtcaca tcggtgacca ccaggcaatc gagaatgtgc
     8281 tggctgtcgg ccaacaccac tgccgtcatc acctgatggg tctgacccga taatttgcgc
     8341 aacatctgcg ccgcatgctc tgcgtcgcgc ggtttctcca gcacttctcc attcaggata
     8401 acgatagtat ccgcacccag caccgggaga tcctgcgccg tttgcgcgac acccgcctgt
     8461 gctttctcgc gtgccagacg cacaacatac tgctgcgcgc tctcctgcgg ctgacgctgc
     8521 tcctcaatgc ccgtaacaat acgttcaaag gtcacgccaa gttgcgcaag taactcctga
     8581 cgacgcggag aaccggaagc taaatacaga gaagtcatag aaacctttat tgcactgcaa
     8641 actgctgacg gactttacgc atcagcaaga aaatccacgg ccagagcacc ccattgacta
     8701 cactactcca gaacacttcc ggtctgaaag agacgttaat cactaaaaac tctgcccaga
     8761 aaacaataat atccaccacc agcgaaagca acatgacgac tagcgcctgc tgccataatg
     8821 cgaggttgcg gaaaagctgg tatttcagcg ccaccaggta agcaatgatg ctcatcgcca
     8881 atacgcgtac gccaagcgtc gagccgctga tcagatccag tatggcaccc atcacaaaac
     8941 ctgtgcccac atttacgcga tggggcaagg ccaggatcca atacaacaag ataagtaaca
     9001 cccagtttgg ccggaaaaca atcaggttat ccggccaggg catgatttgc agcaacagcg
     9061 caatgaggaa agagagccag attacccaac gtccctggct acgatagctc gccactattg
     9121 ccctcccggc gcacgcgcag gcggttgagc accactttgc ggcggcgtag ccctttgtgg
     9181 agagcgatta gcagcaggcg cagtagctgc atttcctgtc gtcggttgct gcggagtcgg
     9241 ctgagcgatc cccgttgccg gttcaggtaa ctttggcccc atcgcgtctg gcgaaggcaa
     9301 tacctgcggc atcatctgca tcagacgttc attagcaaca cgatgcacct cttccggcgt
     9361 catcgggtta gcgccgttac gatccgcgcc ccacagcagc agcagataac gcaaacgttg
     9421 cagtcctgca gtcggacgcg cctgaatcac agtataagcg cgctgggtat cgagttttac
     9481 ggaagagaca accgcgaccg gatagccttc cgggaaacga ccgcccagac cggaggtcac
     9541 cagcacatca ccaacacgaa tatccgtatt cgctggcaga tgctcaagct gcaaatcatc
     9601 cgtacaaccg ttaccggctg caattacgcg gatatcgttg cgcagcacct ggattggcag
     9661 cgcgtgggtc gcatcacaaa tcagcagcac gcgactggtc agtttagcga cggccaccac
     9721 ctgaccaaca acacctttgt cgctgatgac cggctggcct tcataaacgc cattaacgct
     9781 acctttatcg ataacaactt gatcgctata aggatcgtta accgtggaga taacctgagt
     9841 caccattttc tgctcatcct gacgcagcgg ggaacccagc agctcgcgca gacgcgcgtt
     9901 ctcctgtttg tattgtccaa gcatcagcag ttcactgttt ttcagcaaca gttcctgacg
     9961 taacgcccgg ttttcaagtt ctagttggtc acgcgaggcc agcgtctgcg atacgccatc
    10021 cagcaattca cgaggagcat tggaaacaaa gtagaaagga ctgacggcgg tatccatata
    10081 agtacggatt tgactgaacg tccccaggcg gctgtcggca ataataatgc cgagcgccac
    10141 cagcaccgcc agaataaggc gaatctgtag cgacgggcca cggctaaaaa ttggcttcat
    10201 aagttatgcg tattctcgta tcagaccagg cagggtaaac agacatttcc cctgcctgca
    10261 tccgattact cttcgctgaa caggtcgccg ccgtgcatgt cgatcatttc cagcgctttg
    10321 ccgccaccgc gcgccacaca ggtcagcggg tcttcagcaa caacgactgg aatgccggtt
    10381 tcttccatta acaaacggtc aaggttacgc agcagtgcgc caccaccggt gagcaccatg
    10441 ccgcgctcgg agatgtcgga agccagttcc ggcgggcact gttccagtgc aaccattacc
    10501 gcgctcacaa taccggtcag cggttcctgc agtgcttcga ggatttcgtt ggagttcagg
    10561 gtaaaaccgc gtggaacacc ttctgccagg ttacggccac gaacttcgat ttcacggact
    10621 tcatcgcccg ggtaagccga accgatttcg tgcttgatac gttctgcagt ggcttcaccg
    10681 atcagagaac cgtaattacg acgcacatag ttgatgatag cttcgtcgaa acgatcacca
    10741 ccaatgcgca cggaagagga gtaaaccacg ccgttcaagg agataacagc aacttcagtg
    10801 gtaccaccac cgatatcaac caccatagaa ccggtcgctt cagaaaccgg caggccagca
    10861 ccaattgcgg cagccatcgg ttcttcaatc aggaagactt cacgggcacc agcgccctgc
    10921 gcggattcac gaattgcgcg gcgttcaacc tgggtcgcgc caaccggtac acaaaccaga
    10981 acgcgcgggc ttggacgcat aaagctgttg ctgtgcactt gtttgatgaa gtgctggagc
    11041 attttttcag tcacgaagaa gtcggcgata acgccgtctt tcattgggcg aatggcagca
    11101 atattgcccg gcgtacggcc cagcatctgc ttcgcgtcat gacctactgc agctacgctt
    11161 ttcggtgaac cggcacgatc ctgacgaatg gccaccacgg aaggctcatt caatacgatg
    11221 ccttgtcctt ttacataaat gagggtattc gcagtaccca ggtcaatgga caagtcattg
    11281 gaaaacatgc cacgaaattt tttcaacata ctaagggata atcctgaaag ctggggcgga
    11341 aaagaaaatc cgcttacttt accaaccaca cgcagcagcg acaaggcgca aaaatcatct
    11401 gctacggtga aaattagtgc agttcgtttc ctttgttaca aatctctgcc tgagtccaga
    11461 aaggcttaat gcatcagcag cattcctcgc ctgtttgcaa ccgcgtaagg tcattcatct
    11521 gcatatgtgc tgcaacaatc tggcgagcag acaagcacac tcccatgaga cgcagcgcgc
    11581 gttattctac gtgaaaacgg attaaacggc aggttaaacc gagtatcttt gtgaatattt
    11641 tttcacgtta gtatcaagtg gctgtgagga cgcgaaaaaa tccccttgcc cgcctgtaac
    11701 accgcgctga atcagggtct gccactcgct tcgcgaacgc acaccggtgg cgtaaacctg
    11761 ggtgctggtc ccggagcagg cttccaccag gctttgaacc agcagctggt tctccgttcg
    11821 cttctcaatg tttctgacca gccccggatg gagcttgagt aactcaacat taagttcttt
    11881 gatccaactg gtgcttacca gcgtcaaacc agcctggttg acggctaccc gtacccctaa
    11941 agcattcact aaacgaataa caggttgtaa acgactgata tgttgaccta catcggcctc
    12001 tgcaagttca ataattatgc gttttcgttg tgatttttca cattgcatta acgtatcgcg
    12061 cagccaacgc tgaaaacgcg ggcgaatcag cgactcaacg gtaacctgaa tcgccagatt
    12121 ttcctctggc cagtaccgca atagtggaat aagacggctg atttgcagac ggtcatactc
    12181 ttccgataag ccaaactgca agaccatcgg catatactcc gccgagctaa cctcttcatt
    12241 accatcgaag atgcggcaca tgagttcgcg atgatgaacc tgaccttcgc gagtaaccgc
    12301 cggtttttga taaaggcgcg ggccgccgcg actgagcatt tgctcgataa gcgtacgcca
    12361 gcgaacatta ccgcgtcctt tttcaggcaa cgagtcatcg taaatagccc agctattgcc
    12421 gccctgcaat cccgcattac gcgtggcaga ctctgcatgt tccattacct gctcggtatc
    12481 ctgaccacta cgccaggcgc agataccaat gtggatcata tcgtcgcgat cgagcatttt
    12541 attgttcggc aaggtatcga cggctttgat taactgaccg gcgatgctct ctgcctcttt
    12601 taacgtccgg tgcggtaaca gcgcagcaaa atcactgcgg tggtaacgcg ccagcagtgc
    12661 gccagggtag cgcatcataa atgtcgacag cagattcgtc agagtgaaga actgttcttc
    12721 aacctggctg tgcccccaag tatcgctcaa catattgaaa tccggcagac gaatcatcat
    12781 cacgatcccg tgggtaccta ctttctcctg atcttccagt aacgttgcta actgattatc
    12841 gaaaaagagt cggttattga ggccggtttt cacgtcctgg gcggcataag agcggatcag
    12901 cgtatcaaga cggctgtgtt gttcgcgtgc gttctgaatt tcacgaagca gcgtatccag
    12961 cgcactgctg gttctgggcg gccattcata gatggttccc aacacattag agccacgctc
    13021 accgtttaag atacgagtag cccgggtttc cagcaattct tgcccggcaa gttgccgttg
    13081 taaccagcgt accgccaaga agagcataac aatgataaag ctaatcgccc ccgtgagcgg
    13141 cgcggtggtc atcaacgaat ggaaatagtt gcccatcgga tcctgataaa ccagacgcag
    13201 cgacatcccc ggatgcttta tcaacggaac gctcagttca cgaaacagat cgctggagcc
    13261 aaccggacga taactaccat ttctggccag ggtataaacc tgtttatcac catggagcag
    13321 gcctacacga acgatatctg ccgacatcat taattcggta atttgtggcc ttaatgtgct
    13381 gaagtcattc gacacaaggt gggtatcaat cgccgtcgcc accgcctgaa cgcgatgact
    13441 aaacttatac tgaattgcgt tgtagaaact tagcgaacag cccagcaaag tcacaaaaat
    13501 tgttaacccg gtgagcagcg taacaaaggc cgaaaatttc gtcgttaatc tcatccttgt
    13561 gttaactccg atagtgagga agcgggcata ctagcaaatc agatttatct cgcaatttat
    13621 tgcgcttcat cggctttgct tttccattag cgagtataat cttcagaaat tattttccaa
    13681 tccatcatgc acatgaggac cacttatgca ggcgttactt ttagaacagc aggacggcaa
    13741 aactctcgca tcagtacaga ctctggacga aagtcgcctg ccggagggcg atgtcacggt
    13801 cgatgttcac tggtcgagcc tgaactataa agatgcgctg gcgattaccg gtaagggaaa
    13861 aatcatccgt aattttccga tgattcctgg gatcgatttt gccggaactg tacgcaccag
    13921 cgaagatccg cgttttcatg ccggtcagga ggtgttactc actggctggg gcgttggtga
    13981 aaaccactgg ggtgggctgg cggagcaggc gcgagtgaaa ggtgactggc tggttgccat
    14041 gccgcaaggg ctggacgcgc gtaaagcaat aattatcggt actgccggtt ttaccgccat
    14101 gctgtgtgtg atggcgctgg aagatgccgg tgttcgcccg caggacgggg agattgtcgt
    14161 gacgggtgcc agtggtggcg tcggcagtac cgccgtggcg ctgctgcata agttgggtta
    14221 tcaggtcgtt gccgtttccg gtcgcgaaag tacccatgaa tatctgaaaa gtttaggtgc
    14281 cagccgtatt ctccctcgtg atgagtttgc cgaatcccgt cctctggaaa aacaagtctg
    14341 ggctggggca attgacactg ttggcgacaa agtgctggca aaagtgctgg cgcaaatgaa
    14401 ttacggcggc tgcgtggcgg cctgtggtct ggcgggtggt tttactctgc caaccacggt
    14461 catgccattt attctgcgta atgtccgttt gcaaggggtg gattcagtaa tgacgccacc
    14521 agaacgccgc gcacaagcct ggcagcgact ggtcgccgat ttaccggaat cattctatac
    14581 ccaggcggca aaagagatat ctctgtcaga ggcaccgaac tttgccgagg ccatcattaa
    14641 taaccagatc cagggtcgca cgctggtgaa ggttaactaa ccatttagca aggaataata
    14701 agagagggaa ctcattttga catcattatt caatcggtta acgggaaaag cggttagccg
    14761 gacagctttc gtcgaacacc ttggtcagga agttgtacaa catcatccaa actggaaagt
    14821 catgatttcg actgaccaca aattgatgcg cattgatact cctctaaaca gccattattg
    14881 atacgcctcc gtcgcctgtt aggtttatgg tgctttgcct gggcgacact acgcttaacc
    14941 tgttactgat ttctggtacc atggggtgaa taatctgatt ttgtttgact gcaaattaac
    15001 cactcgaacc tatttaatgc tgagaattgt cagtcggttg attttgcgtg ctttagcatt
    15061 cacatctatc cagacgatgc agtgaaaatt gggtaatccc cagcaaccgc tgcgtaatgt
    15121 cgtctatctt gtcgcgatcc tggcatccct acattatttg tggtctgtga agattatctc
    15181 attgcagccc ctcatcttcg cagggctggc tttacagctt ttcaccttac gttataagaa
    15241 gttccgtcga tgatggcgct aatttcgtga attgtgcggc ttgttgcaaa ttacacggtg
    15301 ttgaaggtta tttacatgtt agctgttgat tatcttccct gataagacca gtatttagct
    15361 gccaattgct acgaaatcgt tataatgtgc gacctcgtcc tccctgacgc agtttttgcg
    15421 ctgcggaaaa ggtgacattg gcgcaacgaa ggtatatttt gttttttgcc ggaggatagc
    15481 agcagatcgc tgcacaatgt ccgtcaagtc taacattgat actctggggc aaaatagacc
    15541 ggcgtcccgg cctgctggaa tttatcgcta tgcatacagc tgtcggggca tacgctttac
    15601 agacggcggt gaaacgcctg tcacaatcac actaaacaaa gagtacggaa cccactcatg
    15661 gatattcgta agattaaaaa actgatcgag ctggttgaag aatcaggcat ctccgaactg
    15721 gaaatttctg aaggcgaaga gtcagtacgc attagccgtg cagctcctgc cgcaagtttc
    15781 cctgtgatgc aacaagctta cgctgcacca atgatgcagc agccagctca atctaacgca
    15841 gccgctccgg cgaccgttcc ttccatggaa gcgccagcag cagcggaaat cagtggtcac
    15901 atcgtacgct ccccgatggt tggtactttc taccgcaccc caagcccgga cgcaaaagcg
    15961 ttcatcgaag tgggtcagaa agtcaacgtg ggcgataccc tgtgcatcgt tgaagccatg
    16021 aaaatgatga accagatcga agcggacaaa tccggtaccg tgaaagcaat tctggtcgaa
    16081 agtggacaac cggtagaatt tgacgagccg ctggtcgtca tcgagtaacg aggcgaacat
    16141 gctggataaa attgttattg ccaaccgcgg cgagattgca ttgcgtattc ttcgtgcctg
    16201 taaagaactg ggcatcaaga ctgtcgctgt gcactccagc gcggatcgcg atctaaaaca
    16261 cgtattactg gcagatgaaa cggtctgtat tggccctgct ccgtcagtaa aaagttatct
    16321 gaacatcccg gcaatcatca gcgccgctga aatcaccggc gcagtagcaa tccatccggg
    16381 ttacggcttc ctctccgaga acgccaactt tgccgagcag gttgaacgct ccggctttat
    16441 cttcattggc ccgaaagcag aaaccattcg cctgatgggc gacaaagtat ccgcaatcgc
    16501 ggcgatgaaa aaagcgggcg tcccttgcgt accgggttct gacggcccgc tgggcgacga
    16561 tatggataaa aaccgtgcca ttgctaaacg cattggttat ccggtgatta tcaaagcctc
    16621 cggcggcggc ggtggtcgcg gtatgcgcgt agtgcgcggc gacgctgaac tggcacaatc
    16681 catctccatg acccgtgcgg aagcgaaagc tgctttcagc aacgatatgg tttacatgga
    16741 gaaatacctg gaaaatcctc gccacgtcga gattcaggta ctggctgacg gtcagggcaa
    16801 cgctatctat ctggcggaac gtgactgctc catgcagcgc cgccaccaga aagtggtcga
    16861 agaagcacca gcaccgggca ttaccccgga actacgtcgc tacatcggcg aacgttgcgc
    16921 taaagcgtgt gttgatatcg gctatcgcgg tgcaggtact ttcgagttcc tgttcgaaaa
    16981 cggcgagttc tatttcatcg aaatgaacac ccgtattcag gtagaacacc cggttacaga
    17041 aatgatcacc ggcgttgacc tgatcaaaga acagctgcgt atcgctgccg gtcaaccgct
    17101 gtcgatcaag caagaagaag ttcacgttcg cggccatgcg gtggaatgtc gtatcaacgc
    17161 cgaagatccg aacaccttcc tgccaagccc aggcaaaatc acccgtttcc acgcacctgg
    17221 cggttttgga gtgcgttggg agtctcatat ctacgcgggc tacaccgtac cgccgtacta
    17281 tgactcaatg atcggtaagc tgatttgcta cggtgaaaac cgtgacgtgg cgattgctcg
    17341 catgaagaat gcgctgcagg agctgatcat cgacggtatc aaaaccaacg ttgatctgca
    17401 gatccgcatc atgaatgacg agaacttcca gcatggtggc actaacatcc actatctgga
    17461 gaaaaaactc ggtcttcagg aaaaataatt tgtgacgcgc ggtgttttca tcgcgcttag
    17521 caaagaacgt aatcaacgcc gggcctgtta acgctgcccg gcgtttttat tgccgttagc
    17581 taacggtagc ctgcaatttc cgctttcaac gcgctcattt cagcatcgcc atcaacaatt
    17641 cccagctcaa agcagtattt ctttgtttcc cctggctcaa taaagggcag acgcccctgc
    17701 gctcgttctt tatcacgacc gtcaggaaaa ctattactga cctccagtcc cataacatac
    17761 tcacccgcgc ctaaattttt ccactggata aagttgggta gctgcatggt gtcgaatttc
    17821 tcgtaaattc cccaccccag ttcggcgttc accagagcaa ctttactcat cccctgactg
    17881 tcgctattca acgtgagata gtaaacctgc tcgtcaaaac cgggctgtgg ggtacaaatc
    17941 tccagatgac tggttaaccc ttccgccgca tgcggagttc gtggcgttac gcttttagcc
    18001 gacagcaaga tttctggcct gtggcgataa taaaggccag ccgtaattaa agtgataaag
    18061 aatttgcagc ggctggcggg tgaaaccatg attagtcacc ttgtcttcaa tgcgcagcac
    18121 attttcgcca taacggcagc gaatggtcct ttccagcgtc agattttcgc cgaacagtcg
    18181 cgtttcccgt actttgccat tgatgacaaa ttcaatgccg tcgtcggtcc gttctgtgcg
    18241 ataccccacc tcttctgctg gagtcgcagc caaacgcccg tgtaacccca gcgtttctcc
    18301 ttcatcctca caaggcgtgc caatgtagct aagtccgcag gtagtcagta accccgcgta
    18361 aaagctacgt aaaaatccgt tgccctgaga ctcaaaaaaa gcgggggcga caatgccgtt
    18421 gggggtgata aaagaaagcg ccgtgtcctt gtagctggcc catgcaatat ccagcgcgcg
    18481 atcttttacc accgtaaatg ccagtcccgc accagtacgg acatcaaacg cttctgtacc
    18541 ctttgctctg ccactacgta actcatagtg tttaattccg gcaacctgcg agagatcgcc
    18601 aatccacgac caaatttcgt ttttcattgt gctgcttccc gaatggacat gtcatggcgc
    18661 tggatgaacg cttcgatttc cgcaaggcga gacgttccct ccattgggcc acgtctggtt
    18721 accgccagcg caccgcaggc attggcatat tgcagcgctc gatggacgtc aaaccctagc
    18781 tggcggcagg caatccacgc gccaccaaag cagtctcccg caccggtcgg gtcaacttct
    18841 tccaccggat agctctcaac atgaaactgc tcattcgcgg agtagtaact ggcaccttga
    18901 ttgccgcgct tcacaatcac ctctttaaca ccttcttcaa gaaaacctgc gattgcacgc
    18961 tccggcgtcg aatgtggcga caagagcaac acttcgccct cgctgggcat atagatatcc
    19021 gttaactcaa gaacaaagtg gagggcgtca cgcatttctg gaatatcgag catctcttta
    19081 cgaatattag ggtcgaaaga aataacacca ccatttgctt taacgatagt taccgctttt
    19141 tttactgcgt ctaccatatg aaacgaaaac agggaagagc ccataatatg aaaatgggta
    19201 cagtccttca gaatattttc atcaacatgc tgcgccgata atttaccgca agcggcattc
    19261 ttaatattaa aaataaaatc gcgatcgcca gagttatgat aagtaacaaa ggcactcccg
    19321 gtagcttcca gaggtaagac tgaaatcccc ctgatatcca caccgtcagc agccagacga
    19381 tgtatattaa tatcaccaaa gccatcattc cccacacagc taatgatgcc gcacggaacg
    19441 ccaagacgtg tcacctggtc gataaaaata gcgggcgcac cactgggata agggccgttc
    19501 cagatacctg gttgatcaaa tggctggccg attttactcg ccataatttc aaccagaatt
    19561 tctccaattg tgaagacctt actcatatga ttaattcctt gaaatgatta gctgcgtttt
    19621 cttttatttc ttacgtcaaa ataaacggct acaagaatga ctaatccttt aaccaccatc
    19681 tggtaaaaat agggaacatt cattaagttc atgccattat taataacgcc gatagttaat
    19741 gcgccgatca ccgtccccac cacggttcca tagccgccgt tcaggctggt gcctcccagt
    19801 acagccgcag caatagcatc cagttcgtag ctcaacgcgg aattcggtta cccggaatag
    19861 aggcgtgagg cgaggatcat cccgctgata cctgccagca cggctgtaat cataaagact
    19921 ttaattttca agcgggtgac atttacccct gaataaattg ccgcttcttt attaccacca
    19981 gtgatataaa tttttcgtcc aaaggttgtt ttagtaagaa tgaagtggtt aatcagcaat
    20041 aagatgatta atatccagat tggaataggt atatagagaa attctccatt ccccagtgcc
    20101 agaaaggcat catctttaat catgatgggc ataccatcgg tcactatata agcgatacca
    20161 cggaagatcc ccatagtagc aacggtgaca ataaacgacg ggatccccgc tatagccgtc
    20221 aagccaccat ttatcatccc cagagccagt gctgcaataa tggataatgg gaccaataac
    20281 ataaatggaa ttccccatga agccccaagc gcagcaaatg tgccaatcaa tgcaatggtt
    20341 gaaccgaccg ataaatcaat atcgccaagc aaaagtacat aagtcattcc ataggcggta
    20401 attgcaatta tcgaaacctg aagaataata ttagtaatgt tgttggcggt aaaaaaactg
    20461 tcattaataa aactgaacag aatgattaac accaccattc cactgaggat accgccatat
    20521 tgcctgaaga cttttttaaa attatttgca atgggaattt ccgaaggttt cggactggca
    20581 agagttttct ctgtcattta acgtactcct gttgcagcgg tcattacctg tgtctgcgtt
    20641 aaattttcac atgaataaat atcggcaatc gttttattac gcattaccac cagacgatcg
    20701 ctaagtgcca tgacttctgg cagttcagag gacaccagaa taattgctgt ccctgccgca
    20761 gccagttgac gtatcacgtt atagatttca aattttgcgc cgacatccac tccgcgcgtt
    20821 ggctcatcga gcaataaaat acgcggagtt ttctccagcc acttcgataa cacgattttc
    20881 tgttgattac cgccgctcag cgctcccact gcctgatgta cagaactcac tttagtgttc
    20941 attctggcaa ttgattgcag cgtcttcgcc tcttcttgtc ggtgattgat gagtcccatc
    21001 cgcgaagcgt tatattgaaa cgccacatgg tgcgtgttca tattgacgtc gtgcatcagc
    21061 actaaccctt cttccttgcg gttttcggtc acaaaagcaa tgccatgatc aatagcctgt
    21121 ttaggattag tgatcctgac ttccttacca tcaatcaaca ca
//
LOCUS       DADMHM010000057        20745 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.058, whole genome shotgun sequence.
ACCESSION   DADMHM010000057 DADMHM010000000
VERSION     DADMHM010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20745)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20745)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20745
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.058"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(59..1471)
                     /gene="ftsP"
                     /locus_tag="JN125_001830"
     CDS             complement(59..1471)
                     /gene="ftsP"
                     /locus_tag="JN125_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsP"
                     /protein_id="HAY8871629.1"
                     /translation="MSLSRRQFIQASGIALCAGAVPLKASAAGQQQPLPVPPLLESRR
                     GQPLFMTVQRAHWSFTPGTRASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTENVSMT
                     VAGLQVPGPLMGGPARMMSPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGM
                     WLVEDEVSKLLPIPNHYGVDDFPVIIQDKRLDNFGTPEYNEPGSGGFVGDTLLVNGVQ
                     SPYVEVSRGWVRLRLLNASNSRRYQLQMSDGRPLHVISGDQGFLPAPVSVKQLSLAPG
                     ERREILVDMSNGDEVSITCGEAASIVDRIRGFFEPSSILVSTLVLTLRPTGLLPLVTD
                     SLPMRLLPTEIMAGSPIRSRDISLGDDPGINGQLWDVNRIDVTAQQGTWERWTVRADE
                     PQAFHIEGVMFQIRNVNGAMPFPEDRGWKDTVWVDGQVELLVYFGQPSWAHFPFYFNS
                     QTLEMADRGSIGQLLVNPVP"
     gene            complement(1546..2283)
                     /gene="plsC"
                     /locus_tag="JN125_001831"
                     /gene_synonym="parF"
     CDS             complement(1546..2283)
                     /gene="plsC"
                     /locus_tag="JN125_001831"
                     /gene_synonym="parF"
                     /EC_number="2.3.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acylglycerol-3-phosphate O-acyltransferase"
                     /protein_id="HAY8871630.1"
                     /translation="MLYIFRLIITVIYSILVCVFGSIYCLFSPRNPKHVATFGHMFGR
                     LAPLFGLKVECRKPADAESYGNAIYIANHQNNYDMVTASNIVQPPTVTVGKKSLLWIP
                     FFGQLYWLTGNLLIDRNNRTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRGRGLLPFK
                     TGAFHAAIAAGVPIIPVCVSTTSNKINLNRLHNGLVIVEMLPPIDVSQYGKDQVRELA
                     AHCRSIMEQKIAELDKEVAEREAAGKV"
     gene            complement(2516..4774)
                     /gene="parC"
                     /locus_tag="JN125_001832"
     CDS             complement(2516..4774)
                     /gene="parC"
                     /locus_tag="JN125_001832"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001639862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HAY8871631.1"
                     /translation="MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRR
                     IVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDG
                     QGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPAR
                     LPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTE
                     AEIITSRAEIRKIYENGRGSVRMRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRN
                     KKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGL
                     DGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEI
                     IRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI
                     LVSERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMG
                     WVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ
                     GEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL
                     PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARG
                     EDGLAQLYILPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEID
                     SPRRASSGDSEE"
     gene            complement(5320..5802)
                     /locus_tag="JN125_001833"
     CDS             complement(5320..5802)
                     /locus_tag="JN125_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HAY8871632.1"
                     /translation="MTNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKET
                     GLSPVNQSQTFGVAWDDPATTAPKAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVA
                     RHVGELDDISHTVWGIIRHWLPASGEKMRKAPILFHYTNLAEGMTEQRLETDVYVPLA
                     "
     gene            complement(5855..6247)
                     /gene="ygiW"
                     /locus_tag="JN125_001834"
     CDS             complement(5855..6247)
                     /gene="ygiW"
                     /locus_tag="JN125_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OB fold stress tolerance protein YgiW"
                     /protein_id="HAY8871633.1"
                     /translation="MKKFAAVIAVMALCSAPVMAAEQGGFSGPSATQSQAGGFQGPNG
                     SVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPK
                     DTVEIQGEVDKDWNSVEIDVKQIRKVNP"
     gene            6399..7058
                     /gene="qseB"
                     /locus_tag="JN125_001835"
     CDS             6399..7058
                     /gene="qseB"
                     /locus_tag="JN125_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator QseB"
                     /protein_id="HAY8871634.1"
                     /translation="MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAP
                     YDAVILDLTLPGMDGRDILREWREKGQREPVLILTARDALAERVEGLRQGADDYLCKP
                     FALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL
                     LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE
                     K"
     gene            7055..8404
                     /gene="qseC"
                     /locus_tag="JN125_001836"
     CDS             7055..8404
                     /gene="qseC"
                     /locus_tag="JN125_001836"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     QseC"
                     /protein_id="HAY8871635.1"
                     /translation="MKFTQRLSLRVRLTLIFLILASVTWLLSSFVAWKQTTDNVDELF
                     DTQLMLFAKRLSTLDLNEINAADRMAQTPNKLKHGHVDDDALTFAIFTHDGRMVLNDG
                     DNGEDIPYSYQREGFADGQLVGEDDPWRFVWMTSPDGKYRIVVGQEWEYREDMALAIV
                     AGQLIPWLVALPIMLIIMMVLLGRELAPLNKLALALRMRDPDSEKPLNATGVPSEVRP
                     LVESLNQLFARTHAMMVRERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKAL
                     LQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDLLQSSVMDIYHTAQQAKID
                     VRLTLNVQGIKRTGQPLLLSLLVRNLLDNAVRYSPQGSVVDVTLNADNFIVRDNGPGV
                     TPEALARIGERFYRPPGQTATGSGLGLSIVQRIAKLHGMNVEFGNAEQGGFEAKVSW"
     gene            8514..9095
                     /gene="mdaB"
                     /locus_tag="JN125_001837"
     CDS             8514..9095
                     /gene="mdaB"
                     /locus_tag="JN125_001837"
                     /EC_number="1.6.5.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH:quinone oxidoreductase MdaB"
                     /protein_id="HAY8871636.1"
                     /translation="MSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRA
                     DSDYDVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRK
                     DPSKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGM
                     EPLPTFIANDVIKMPDVPRYTEEYRKHLVEIFG"
     gene            9126..9440
                     /locus_tag="JN125_001838"
     CDS             9126..9440
                     /locus_tag="JN125_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HAY8871637.1"
                     /translation="MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEGCHGYAPMV
                     DCAAGVSFQSMAPDSIVMIEQWESIAHLEAHLQTPHMKAYSEAVKGDVLEMNIRILQP
                     GI"
     gene            complement(9488..11380)
                     /gene="parE"
                     /locus_tag="JN125_001839"
     CDS             complement(9488..11380)
                     /gene="parE"
                     /locus_tag="JN125_001839"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HAY8871638.1"
                     /translation="MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSV
                     DEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN
                     KNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQIYNIAFENGEKVQDLQVVGTCGKRN
                     TGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDG
                     LNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG
                     GTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTK
                     ERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLT
                     SGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEV
                     SSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVK
                     HFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGL
                     GEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGD
                     MAEIEV"
     gene            complement(11409..11990)
                     /gene="yqiA"
                     /locus_tag="JN125_001840"
     CDS             complement(11409..11990)
                     /gene="yqiA"
                     /locus_tag="JN125_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase YqiA"
                     /protein_id="HAY8871639.1"
                     /translation="MSTLLYLHGFNSSPRSAKASLLKNWLAEHHPDVEMIIPQLPPYP
                     SDAAELLESIVLEHGGDSLGIVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDY
                     LGQNENPYTGQQYVLESRHIYDLKVMQIDSLEAPDLIWLLQQTGDEVLDYRQAVAYYA
                     FCRQTVIEGGNHAFTGFEDYFNPIVDFLGLHHL"
     gene            complement(11990..12817)
                     /gene="cpdA"
                     /locus_tag="JN125_001841"
     CDS             complement(11990..12817)
                     /gene="cpdA"
                     /locus_tag="JN125_001841"
                     /EC_number="3.1.4.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3',5'-cyclic-AMP phosphodiesterase"
                     /protein_id="HAY8871640.1"
                     /translation="MESLLTLPLAGEARVRILQITDTHLFAQKHEALLGVNTWESYQA
                     VLEAIRPHQHEFDLIVATGDLAQDQSSAAYQHFAEGIASFRAPCVWLPGNHDFQPAMY
                     SALQDAGISPAKRVFIGEQWQILLLDSQVFGVPHGELSEFQLEWLERKLADAPERHTL
                     LLLHHHPLPAGCSWLDQHSLRNAGELDTVLAKFPHVKYLLCGHIHQELDLDWNGRRLL
                     ATPSTCVQFKPHCSNFTLDTIAPGWRTLELHADGTLTTEVHRLADTRFQPDTASEGY"
     gene            complement(12842..13264)
                     /locus_tag="JN125_001842"
     CDS             complement(12842..13264)
                     /locus_tag="JN125_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1249 family protein"
                     /protein_id="HAY8871641.1"
                     /translation="MKRYTPDFPEMMRLCEMNFSQLRRLLPRNDAPGETVSYQVANAQ
                     YRLTIVESTRYTTLVTIEQTAPAISYWSLPSMTVRLYHDAMVAEVCSSQQIFRFKARY
                     DYPNKKLHQRDEKHQINQFLADWLRYCLAHGAMAIPVY"
     gene            complement(13265..13894)
                     /gene="nudF"
                     /locus_tag="JN125_001843"
     CDS             complement(13265..13894)
                     /gene="nudF"
                     /locus_tag="JN125_001843"
                     /EC_number="3.6.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-ribose diphosphatase"
                     /protein_id="HAY8871642.1"
                     /translation="MLKPDNLPVTFGKNDVEIIARETLYRGFFSLDLYRFRHRLFNGQ
                     MSHEVRREIFERGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEG
                     ESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGTSERSSIMVGEVDATTASGIHGLA
                     DENEDIRVHVVSREQAYQWVEEGKIDNAASLIALQWLQLHHQALKNEWA"
     gene            14099..15580
                     /gene="tolC"
                     /locus_tag="JN125_001844"
     CDS             14099..15580
                     /gene="tolC"
                     /locus_tag="JN125_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417507.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane channel protein TolC"
                     /protein_id="HAY8871643.1"
                     /translation="MKKLLPILIGLSLSGFSSLSQAENLMQVYQQARLSNPELRKSAA
                     DRDAAFEKINEARSPLLPQLGLGADYTYSNGYRDANGINSNATSASLQLAQSIFDMSK
                     WRALTLQEKAAGIQDVTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLD
                     QTTQRFNVGLVAITDVQNARAQYDTVLANEVTARNNLDNAVEQLRQITGNYYPELAAL
                     NVENFKTDKPQPVNALLKEAEKRNLSLLQARLSQDLAREQIRQAQDGHLPTLDLTAST
                     GISDTSYSGSKTRGAAGTQYDDSNMGQNKVGLSFSLPIYQGGMVNSQVKQAQYNFVGA
                     SEQLESAHRSIVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTRTIV
                     DVLDATTTLYNAKQELANARYNYLINQLNIKSALGTLNEQDLLALNNALSKPVSTNPE
                     NVAPQTPEQNAIADGYAPDSPAPVVQQTSARTITSNGHNPFRN"
     gene            15728..16399
                     /locus_tag="JN125_001845"
     CDS             15728..16399
                     /locus_tag="JN125_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417509.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1190 family protein"
                     /protein_id="HAY8871644.1"
                     /translation="MKRTKSIRHASFRKNWSARHLTPVALAVATVFMLASCEKSDETV
                     SLYQNADDCSAANPGKSAECTTAYNNALKEAERTAPKYATREDCVAEFGEGQCQQAPA
                     QAGMAPENQAQAQQSSGSFWMPLMAGYMMGRLMGGGAGFAQQPLFSSKNPASPAYGKY
                     TDATGKNYGAAQPGRTMTVPKTAMAPKPATTTTVTRGGFGESVAKQSTMQRSATGTSS
                     RSMGG"
     gene            16405..17565
                     /locus_tag="JN125_001846"
     CDS             16405..17565
                     /locus_tag="JN125_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HAY8871645.1"
                     /translation="MERVSITERPDWREKAHEYGFNFHTMYGEPYWCEDAYYKLTLAQ
                     VEKLEEVTAELHQMCLKVVEKVIASDELMTKFRIPKHTWSFVRQSWLTHQPSLYSRLD
                     LAWDGTGEPKLLENNADTPTSLYEAAFFQWIWLEDQLNAGNLPEGSDQFNSLQEKLID
                     RFVELREQYGFQLLHLTCCRDTVEDRGTIQYLQDCATEAEIATEFLYIDDIGLGEKGQ
                     FTDLQDQVISNLFKLYPWEFMLREMFSTKLEDAGVRWLEPAWKSIISNKALLPLLWEM
                     FPNHPNLLPAYFAEDDHPQMEKYVVKPIFSREGANVSIIENGKTIEAAEGPYGEEGMI
                     VQQFHPLPKFGDSYMLIGSWLVNDQPAGIGIREDRALITQDMSRFYPHIFVE"
     gene            complement(17603..18418)
                     /gene="ygiD"
                     /locus_tag="JN125_001847"
     CDS             complement(17603..18418)
                     /gene="ygiD"
                     /locus_tag="JN125_001847"
                     /EC_number="1.13.11.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311954.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,5-DOPA dioxygenase extradiol"
                     /protein_id="HAY8871646.1"
                     /translation="MTPLVKDIIMSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMT
                     LPRPQAIVVVSAHWFTRGTGVTAMETPPTIHDFGGFPQALYDTHYPAPGSPVLAQHLV
                     ELLAPVPVTLDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLA
                     ALRDEGIMLVASGNVVHNLRTVKWHGDSSSYPWAMSFNEYVKANLTWQGAVEQHPLVN
                     YLDHEGGALSNPTPEHYLPLLYVLGAWDGQEPITIPVDGIEMGSLSMLSVQIG"
     gene            18534..19295
                     /gene="zupT"
                     /locus_tag="JN125_001848"
     CDS             18534..19295
                     /gene="zupT"
                     /locus_tag="JN125_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HAY8871647.1"
                     /translation="MSVPLILTILAGAATFIGAFLGVLGQKPSNRLLAFSLGFAAGIM
                     LLISLMEMLPAALAAEGMSPVLGYGMFIFGLLGYFGLDRMLPHAHPQDLMQKSVQPLP
                     KSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPV
                     YAATGSKRTAILWAGISGLAEILGGVLAWLILGSMISPVVMAAVAGIMVALSVDELMP
                     LAKEIDPNNNPSYGVLCGMSVMGFSLVLLQTAGIG"
     gene            complement(19353..19523)
                     /locus_tag="JN125_001849"
     CDS             complement(19353..19523)
                     /locus_tag="JN125_001849"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871648.1"
                     /translation="MFIAWYWIVLIALVVVGYFLHLKRYCRAFRQDRDALLEARNKYL
                     NSTREETAEKVE"
     gene            complement(19784..20437)
                     /gene="ribB"
                     /locus_tag="JN125_001850"
     CDS             complement(19784..20437)
                     /gene="ribB"
                     /locus_tag="JN125_001850"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001077009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HAY8871649.1"
                     /translation="MNQTLLSSFGTPFERVENALAALREGRGVMVLDDEDRENEGDMI
                     FPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNTSAYGTGFTVTIEAA
                     EGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDL
                     MTLAGFKPAGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHERKAS"
     regulatory      complement(20541..20689)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
BASE COUNT         5068 a         5591 c         5223 g         4863 t
ORIGIN      
        1 gaacgaaaga gaaatcgaaa agtattccat actcgccctc ctcgggcgag tatgaagatt
       61 acggtaccgg attgactaac agttgcccaa tcgagccacg gtccgccatt tccagcgtct
      121 gactgttgaa gtagaacggg aagtgcgccc aggaaggctg accgaaataa acaagcagct
      181 ccacttgtcc gtcaacccaa acggtatctt tccagcctct gtcttccggg aacggcatcg
      241 caccattcac gttacggatc tggaacatca cgccttcaat atggaacgct tgcggctcgt
      301 ccgcgcgtac cgtccagcgt tcccacgttc cttgctgcgc ggtgacatca atacggttga
      361 cgtcccacag ttgtccatta atacccgggt catcacccag actgatatcg cgactgcgaa
      421 tcggcgaacc ggccatgatt tcagttggca gcaagcgcat cggaagactg tctgtgacca
      481 gcggcagaag gccggttggg cgcagcgtta gcaccagggt agaaaccaga atgctggatg
      541 gctcaaagaa gccacgaata cgatcaacaa tgctcgccgc ttcgccacag gtgatcgaca
      601 cttcatcacc gttgctcata tccaccagaa tctcgcggcg ctcgcccggt gccaacgaaa
      661 gttgcttcac cgatacagga gcaggcagga atccctgatc gccagaaatc acatgtaacg
      721 ggcgaccatc gctcatctgt agttgatagc gacgagagtt cgacgcgttc agcagtcgca
      781 agcgcaccca gccacgcgag acttcaacgt acgggctttg tacaccgtta accagcagcg
      841 tatcaccaac aaagccgccg cttcccggtt cgttgtattc tggcgtacca aagttatcca
      901 gccgtttatc ctggataatg accggaaaat catccacacc ataatggttg gggataggca
      961 gcaacttgct gacttcatct tccaccagcc acattccggc aaggccgtta tagacctgct
     1021 gagccgtgcg gttgggagta ttggcgtgat accacagagt agctgcgttc tggcgaatgg
     1081 gcagtacggg tgcccagtca gcgtttggcg acatcatccg tgccggaccg cccatcagcg
     1141 ggcctggtac ctgtagcccg gccaccgtca ttgagacatt ttctgtcagg cggttgctgt
     1201 aaataagctt aacatcgtcg cccttccaga cgcggatagt cggccccagg taacgaccat
     1261 tgattcccca gaccgacgcg cgtgtccctg gcgtaaatga ccagtgcgca cgttgtacag
     1321 tcataaacag cggttgccca cggcgagatt caagtagcgg cggaacgggt agcggttgct
     1381 gttgcccggc tgcgctggcc ttcaggggaa cagcgccggc acaaagtgca atccccgatg
     1441 cctgaatgaa ctgacgccga ctgagtgaca tatttgctcc atgtaaaact ggctaaagta
     1501 ataccgtgca ggaaagtgtt ccccgcaaaa atacagattg ccgacttaaa cttttccggc
     1561 ggcttcgcgt tctgcgactt ctttatcgag ctcggcgatt ttttgttcca ttatcgaacg
     1621 acaatgggca gccagctcac gaacctgatc tttgccatac tgactgacgt caattggcgg
     1681 cagcatttcg acaatcacca gaccgttgtg cagtcgatta agattaatct tattcgaagt
     1741 tgtagagacg cacacgggaa taatcgggac gcccgccgca attgccgcgt gaaatgctcc
     1801 agtcttgaac ggtagcaggc cgcgaccacg gctgcgggtt ccttccggga acatccagat
     1861 ggaaatacgg cgttttttga aatgattcac gacttccgca atggtgccgt gagctttagt
     1921 gcgattgttt ctgtcgatca ataagttgcc ggttaaccag tacaattgcc cgaagaaggg
     1981 gatccacagc aagctctttt tacctaccgt caccgtcggc ggttgcacaa tgttcgatgc
     2041 tgtcaccatg tcatagttgt tctggtggtt agcgatatag atagcattgc cgtagctttc
     2101 agcatctgca ggtttgcggc actcaacttt caggccgaac agcggcgcaa gacggccaaa
     2161 catatgccca aaggtggcca catgtttcgg gttacgcggg ctgaaaaggc agtaaatgga
     2221 gccgaataca cagactaaga tgctgtaaat cacggtaata ataagacgaa agatatatag
     2281 cataacaacc tctgaaggtc tgagagactg gcattgtacg tcacctgaaa tcaggttagg
     2341 gcattgttaa aagccgctct ctggaaaagc gtattgttaa tcgcaacgca tgaataaaca
     2401 acggtttcaa gggaattttt atcgtttccg ggggttgaat acgctgccga atgacgactt
     2461 aacgtttcat ccggcgttcc ttgcaagcgg gaggaaacag gccctccccg gcatattact
     2521 cttcgctatc accgctgctg gcacggcgag gagagtcgat ctcaacacga tcgatacgct
     2581 gcaaaccgcg catcaacgta ccgcggcgtc cacgttcgcc agtgactttc tgtaactctt
     2641 ccgggcgcag tttaattttg cgtttcccaa catgaatggt cagcgtgctt tgcggcggca
     2701 gaatgtacaa ttgcgccaga ccatcttctc cacgcgcggc ttctgccgat ggaatgttga
     2761 taatcttgtt gcctttgccc ttcgacagct gcggcagatc gcttaccggg aacatcaaca
     2821 tacggcctgc ctgagtgatt gccagcagca tatcggaagc atcttcaatc accaccggcg
     2881 gcataacatg ggcattttcc ggtaaggtga tcaaagcctt acctgcacgg ttacgcgcca
     2941 ccagatcgtt aaaggtgcag acgaaaccgt aacccgcatc ggaagccatc agcagtttct
     3001 gatcgtcgct ttccatcagc atatggtcaa cggtcgcccc aggcggcaac gttaatttgc
     3061 cggtgagtgg ttcgccctga ccacgcgccg acggcagcgt aatcgggtcg atggcatagc
     3121 tacgaccggt ggaatcaaca aacactaccg gttggttgct cttacctttc accgccgctt
     3181 tgaagctatc acccgcttta taattcaggc ccggcgcgtc gatatcatgg cctttagcgc
     3241 tgcgtaccca gcccatctgc gacagcacaa tggtgacagg ttcagacggc agcatgtcgt
     3301 gctcgctcat cgctttcgct tcttcgcgtt cctgcaacgg cgaacgacga tcgtcaccgt
     3361 aggcttgcgc gtctgcctgc agttctttct tcagcaggtt attcatttta cgctcggaaa
     3421 ccaaaatgcc ctgcaactgg tcgcgctctt tttccagctc actctgctca ccgcgaatct
     3481 tcatctcttc cagtttggca agatgacgca gtttcagttc gaggatcgct tccgcctggg
     3541 tttccgtaag gccaaaccgc gacatcagcg ccggtttcgg ttcatcttcg ttacgaatga
     3601 tctcaatcac ttcgtcgatg ttgagaaacg ccaccagcaa accttccagg atatgcaggc
     3661 gcttgaggac tttctccaga cgatagttca gtcggcggcg cacggtatcg cgacggaaca
     3721 ccagccattc ggagaggatt tccagcaggt ttttcaccgc cggacgacca tccagaccga
     3781 tcatattgag gttaatgcga tagctctttt ccagatcggt ggtagcgaag aggtggttca
     3841 tcacctgatc catatccacg cggttggaac gcggcacaat caccagacgg gtcgggttct
     3901 cgtggtcaga ttcatcgcgc agatcgtcaa ccatcggcag ctttttgttg cgcatttgcg
     3961 cagcaatttg ctccagtacg cgcgcacctg aaacctgatg cggcaatgcg ctgataacca
     4021 ccgcgccatc ttctttcttc cacaccgcgc gcatacgcac tgaaccacgt ccgttctcgt
     4081 agattttacg gatctcggcg cgcgaagtga taatttccgc ttcagtcgga taatccggcc
     4141 cctgcacgat atccagcagc tgatcgagcg tggttttcgg ctggtcgatt aatgcgattg
     4201 ccgcctgagc tacttcacgc aggttatgcg gtggaatatc ggtcgccatg ccgacggcaa
     4261 taccggtggt gccgttaagc aaaatgtttg gcagacgggc aggcagcatt ttcggctcct
     4321 gcaaagtgcc gtcgaagttt ggcacccagt cagccgtccc ctgccccagc tcgctcaata
     4381 gcagctcgga atatttcgac aaccgggatt cggtgtaacg cattgccgcg aacgatttcg
     4441 gatcgtccgg cgcgccccag ttcccctgac catcaaccag cggataacgg taagagaacg
     4501 gctgcgccat caggaccatc gcttcataac aggcgctatc gccgtgcgga tggtatttac
     4561 ccagtacgtc accgacggta cgggccgatt ttttaaattt agcgctggca ttcaggccca
     4621 gttcagacat cgcatacaca atgcggcgct gaacaggttt aagaccatcg ccaataaacg
     4681 gcaacgcacg gtccatgatc acgtacatgg agtagtttaa gtaggcgttt tccgtaaatt
     4741 catgtagcgc aaggcgctct gccatatcgc tcattaattc tgattcctca acttattcgc
     4801 cagccttcaa aggggcaata ttgccggaga tactacatta tctgccgcgt cgagtcacag
     4861 gagatcagcg tgaatagcgc cgccggacgt gctccgacgg cgataaaggc atcaatgtgc
     4921 cttgatatac aactctttgc tgtagacttg atcggcatag agggcagcac aaggttgcgc
     4981 ccatgccaca ccactcggca tgggggtccg ctccgggcga ttcgagaagt tgaggttatg
     5041 cgagtccagg gaagcctaaa gcatcaaagt agtcgactgt aagtatacgg ttcagcccag
     5101 tttagctgtg tctccaccag tgccccgcgc ctcctgccat aagtgcggct tgctcatgga
     5161 tacccccgag acggcttacg gcgcaccgga taataaattt cgcgtataca tggtattcct
     5221 taccggagaa attataagcc caacaacaat acgcctgtgg cattgttcgc tcaaacttat
     5281 cgcgagtgat ttggctcaca ctccggtaaa gattccccat cacgctaacg gcacataaac
     5341 atccgtttcc agtcgctgtt ctgtcatacc ttcggcaaga ttggtgtagt gaaacagaat
     5401 cggtgcttta cgcattttct cgccgcttgc aggcagccag tggcgaatga tgccccatac
     5461 cgtgtgtgaa atatcgtcca gctcgccaac gtggcgggcc acggcataac gtccaccggt
     5521 aagttcacca ttgctcacac cataacgatt atcgggaatc ggttcgctaa cgctgccgca
     5581 gatatcaaag cgaaacgctt tcggtgcggt ggtggcaggg tcgtcccagg cgacgccaaa
     5641 agtctggctt tggttaacag gagaaagccc cgtctcttta cgccacatga taaatttcgc
     5701 cacactgtag ttgagcaact cagggctaca gcggtgcggc aacatcgcca cagggattga
     5761 tgggaaatcg ataatgttta catccagtgt caggtttgtc attttgcctc cctgcgaaat
     5821 tattcccggg aacgcgtccc gggagcggta acaattacgg atttactttg cggatctgtt
     5881 tgacgtcaat ttcaacagaa ttccagtctt tatcgacttc cccctgaatc tcaaccgtat
     5941 ctttcggcgt caccgtcaca ccgttccagc gtttgtggtc gatatcaaca ttgatagtac
     6001 cgctggcatc tttaaacacg tagagatcgt cagagatgcg ttcaacgata ttgccgcgca
     6061 gggttaccca ggtgtcgtca cgcagggatt ttgcgctttc tacagtcgtt acgctgccgt
     6121 tcggcccctg gaatcctccg gcctgacttt gcgttgccga tgggccagaa aaaccgccct
     6181 gctctgctgc catcaccggt gcactgcaca gggccattac tgcgattact gctgcgaatt
     6241 ttttcatgtt tattactccc tttaatgtct gtttccgagc atttaacaag atagtcctta
     6301 acaacttctt aagggaaaaa aataaaattt aatgctgtac agagcgcgtt acaacacggt
     6361 ttactggcag caaatacggt tatcgcaggg atgaaaaaat gcgaatttta ctgatagaag
     6421 atgacatgct gattggcgac ggcatcaaaa ctggccttag taaaatgggt tttagtgtcg
     6481 actggtttac acaaggtcgt cagggaaaag aggcgcttta tagcgcacct tatgatgcgg
     6541 tgatcctgga tttaacctta ccaggcatgg atggtcgcga tattttgcgt gaatggcgag
     6601 agaaaggtca gcgtgagccg gtactgatcc tgaccgcgcg tgatgcgtta gcggaacgtg
     6661 tagaagggct gcgtcaggga gctgacgatt atctgtgtaa accttttgcg ttgatagaag
     6721 tcgccgccag gctggaggct ctgatgcgcc gaaccaacgg ccaggccagc aacgagctgc
     6781 gccacggtaa cgtcatgctc gaccccggca aacgtatcgc cacgctggct ggcgaaccct
     6841 taacactgaa accaaaagaa tttgccctgc tggaattact gatgcgtaac gctggtcggg
     6901 tactaccgcg caaactgatt gaagagaaac tgtatacctg ggacgaagag gtcaccagta
     6961 atgccgttga agtgcatgtg catcatctgc gacgcaaact cggtagtgat tttattcgta
     7021 ccgtgcatgg tattggctac acattaggtg agaaatgaaa tttacccaac gtcttagtct
     7081 gcgcgtcagg ctgacgctaa tctttttaat tctggcctcg gtgacctggc tgctttccag
     7141 ctttgtcgcc tggaaacaaa caacggataa cgtcgatgaa ttgttcgaca cccaactgat
     7201 gctgtttgcc aagcggttaa gtacgctcga tctcaacgaa atcaacgcgg cggatcgcat
     7261 ggcacagacg ccaaataaat taaaacacgg tcatgttgat gacgatgcgc tgacctttgc
     7321 catctttacc cacgacggca gaatggtcct taatgatggc gataacggag aagatattcc
     7381 ctatagctat caacgggaag gttttgctga cgggcaactg gtcggtgaag acgatccttg
     7441 gcgttttgtc tggatgacct cacctgatgg caaatatcgc atcgttgttg gccaggaatg
     7501 ggaataccgt gaagacatgg cgctggcgat tgttgccggg caattgatcc cgtggctggt
     7561 cgcactgccg attatgttaa tcatcatgat ggtactactg ggtcgtgaac tcgcgccgct
     7621 gaacaaactg gcgctggcac tacgtatgcg tgaccctgac tcggaaaaac cactaaacgc
     7681 gactggcgta cccagcgaag tgcgaccact ggttgagtcg ctaaatcaac tgttcgcccg
     7741 cacacatgcg atgatggttc gagaacgacg ctttacctcc gatgcagctc acgaactacg
     7801 tagcccgtta acagcgctga aagtgcaaac cgaagttgcg cagctctctg acgatgatcc
     7861 gcaggcgcgg aaaaaagcac tgctccaatt acattccggg atcgatcgcg ctactcgtct
     7921 ggttgatcaa ctgctcacgc tatcgcggct ggactcactg gataaccttc aggacgtcgc
     7981 ggagatcccg cttgaagatc tcctgcaatc gtcggtgatg gatatttacc acacggcgca
     8041 gcaggcgaaa attgacgtgc gactgacact caatgtccag ggcatcaaac gcaccggaca
     8101 accgctattg ctaagtttgt tggtgcgaaa tttgctggat aacgccgtgc gttacagtcc
     8161 acagggcagc gtggtggacg tcacgctgaa tgccgataat ttcatcgtga gggataacgg
     8221 ccccggtgtg acaccagagg cactggcgcg aattggcgaa cgcttctatc gcccccccgg
     8281 acaaaccgct accggcagtg gacttgggct atcgattgtc cagcgaatcg ccaagctgca
     8341 tggcatgaat gttgagtttg ggaatgcgga acaaggtgga tttgaggcga aagtaagctg
     8401 gtaagggtaa gacttttgct aaattcgcaa aagactttgc acattttgct aatttcaccg
     8461 taccgctctg tgacgtacta tagtcggcaa acgtctcacc ttgaggttaa aaaatgagca
     8521 acattctgat tatcaacggc gcgaaaaaat tcgcccactc caatggtcaa ctgaatgaca
     8581 ccctgaccga agtcgcggat ggcacactgc gcgacctcgg gcatgatgtt cgcatcgttc
     8641 gcgccgacag cgactacgat gtcaaagcgg aagtacaaaa ctttctctgg gctgatgtgg
     8701 tgatctggca gatgccaggc tggtggatgg gcgcgccgtg gacagtgaaa aaatacattg
     8761 atgatgtatt caccgaaggt cacgggacgc tgtatgccag cgatggccgt acccgcaaag
     8821 atccgtcaaa aaaatacggt tccggcggcc tggtacaggg caaaaaatat atgctttctc
     8881 tgacctggaa cgcaccaatg gaagccttca ccgaaaaaga tcaattcttc cacggcgttg
     8941 gcgtcgacgg tgtgtatctg ccgttccata aagcaaacca attccttggc atggaaccgc
     9001 tgccgacatt tatcgctaat gacgtgataa aaatgcctga tgttccccgc tatactgaag
     9061 aatatcgcaa gcatcttgtg gaaatttttg gttaactaga gctcaggctt tagaaggagt
     9121 taaccatgct taccgtaatc gcagaaatcc gtactcgtcc tggtcaacat caccgtcagg
     9181 cggtattgga tcagtttgct aaaatcgttc caaccgtact gaaagaagaa ggttgccacg
     9241 gctatgcgcc aatggtggat tgcgctgctg gcgtgagttt ccagtctatg gcaccggatt
     9301 ctatcgtgat gattgagcag tgggaaagca tcgcgcacct tgaagcgcat ctgcaaaccc
     9361 cgcacatgaa ggcgtacagc gaagccgtaa aaggtgacgt gctggagatg aatattcgta
     9421 ttctgcagcc agggatttaa tcctgccttg tttgcccggc catcctgacc gggcaatgtt
     9481 ctttccttta aacctcaatc tccgccatgt cgcctttctc ttgcaaccag ttgcggcgat
     9541 cttccgagcg tttcttcgcc agtagcatgt ccatcatcgc gtcagtacgc tgatcgtctt
     9601 catcatcgat agtcaactgc accagacggc gagtgttcgg atcaagcgtg gtttcgcgca
     9661 attgcatcgg gttcatttcc cccagacctt taaaacgctg gacgttcggc ttgcctttct
     9721 tgcgttttaa ttgctcaagt acgccctctt tctcttcttc cgtcagcgcg taataaacct
     9781 ctttcccgag atcaatacgg tagagcggtg gcagtgcgac gtaaacgtga ccgtgtttca
     9841 ccaacgcgcg gaagtgtttt acaaacaaag cgcagagcag cgtggcaatg tgcagaccat
     9901 cggagtcagc atccgccagg atacagatct tgccgtaacg aagctggctc aaatcgtcgc
     9961 tgtcaggatc gataccgatc gctaccgaaa tatcgtgcac ttcctgcgaa gccagcactt
    10021 cgtcggaaga gacttcccag gtgttaagga tcttaccttt cagtggcatg atcgcctgat
    10081 attcgcgatc gcgcgcctgc ttggcagatc cgcctgcgga gtcaccttcc acaagaaaca
    10141 gttcggtgcg gttaaggtcc tgcgcggtac agtcagccag tttgccaggc agcgccggac
    10201 cgctggtcag ctttttacgc accacttttt tagccgcacg catacgacgc tgggcgctgg
    10261 aaatcgccat ctctgccagc aactccgccg cctgaacgtt ctggttcagc cacaggataa
    10321 aggcatcttt caccacgcca gaaacgaatg ccgcgcactg acgcgaagag agacgctctt
    10381 tggtctgccc ggcaaactgc ggatcctgca tttttactga cagcacatag gcgcagcgat
    10441 cccagatatc ttccgccgac agctttacac cgcgcggcag aatgttgcgg tattcacaga
    10501 actcacgcat cgcgtccagc aggccctgac gcagaccatt aacatgggta ccgccctgca
    10561 tcgttgggat caggttgacg tagctttcgg tcagcaattc accgccttcc ggcagccaca
    10621 gtagcgccca gtccaccgct tcagtatcgc cagcgaaatt accgataaac ggtttttctg
    10681 gcagcgtcgg taaaccgttt accgcttccg ccaggtaatc attcagaccg tcctgatagc
    10741 accagcgctg ttcggtgttg ttgatctcat ctttaaaggt aatctcaacg ccggggcaca
    10801 gtactgcttt ggctttcagc acatgcgtca ggcgtgaaac agaaaaacgc gggctatcga
    10861 agaaggtttc atccggccag aaatggacgc tggtgccggt attgcgttta ccgcaagtgc
    10921 cgacaacctg taaatcctgc accttttcgc cattttcaaa ggcgatgtta taaatctgac
    10981 catcgcggcg cacgttaact tctacgcgct tcgacagggc gttaaccacc gaaatcccca
    11041 cgccatgcag gccgccagag aactggtaat ttttgttaga gaatttaccg cctgcatgca
    11101 gacggcaaag aatcagttca accgccggta caccctcttc cgggtgaata tccaccggca
    11161 tcccgcgccc atcgtcaata acttctaacg actggtcagc atgtaaaata acgtccacgc
    11221 gttttgcgtg acccgccagt gcttcatcca cactgttatc aatgacttct tgccccaaat
    11281 ggttagggcg agtggtatcg gtatacatcc ccggacggcg gcgaaccggc tcaagtccgg
    11341 tgagtacctc aatggcatca gcgttataag tttgcgtcat ggtttaagtt agtaattcga
    11401 gttgatcgtc agagatggtg cagaccaaga aaatcgacga tcgggttgaa ataatcttcg
    11461 aagcccgtga atgcgtggtt gccgccttct atgacagtct ggcggcagaa agcgtagtac
    11521 gccaccgcct ggcggtaatc cagcacttca tctcccgtct gttgcagcag ccagatcaaa
    11581 tccggcgctt ccagcgagtc aatctgcatg actttaagat cgtaaatatg gcgtgactct
    11641 agcacatatt gctgcccggt gtaggggttc tcgttctgac cgagatagtc cgtcagcagt
    11701 tcaaacgggc gcaccgccgg gtttaccacc actgcgggca gcataaaaca ttgtgacaac
    11761 caggtggcgt aatatccccc cagtgacgaa ccgacaatac ccagcgaatc gccgccatgt
    11821 tccaggacaa tggattccag cagctctgcc gcgtcggaag gatacggcgg caactgcgga
    11881 atgatcatct caacgtcagg gtgatgttcc gccagccagt tttttaacaa gctcgctttt
    11941 gcagagcgcg gcgagctgtt gaaaccgtgt aaataaagaa gcgtagacat cagtagcctt
    12001 ctgaagcggt atcaggttgg aaacgtgtgt ccgccaggcg atgcacctcg gtggtcagcg
    12061 tgccatcagc atgtaactcg agagtacgcc agccgggcgc gatggtatcc agcgtaaagt
    12121 tggaacagtg cggcttaaac tgcacacagg tcgacggcgt tgccagcagg cggcgaccgt
    12181 tccagtcgag atccagctcc tgatgaatat gaccgcacag caagtatttg acgtgcggaa
    12241 acttcgccag cacggtatcc agttcgcccg cgttacgcag actgtgttga tcgagccaac
    12301 tacaacccgc aggtagcgga tgatgatgca gcagcagcaa cgtatggcgt tctggcgcat
    12361 cggccagttt acgttccagc cactcaagct gaaactcgct cagctcaccg tgcggcacgc
    12421 caaacacctg gctatccagc aacaggattt gccattgctc accaataaac acgcgcttcg
    12481 ccggggagat acccgcatcc tgtaacgcgc tgtacatcgc gggctggaaa tcgtggttgc
    12541 ccggcagcca gacgcagggc gcacgaaaac ttgcgatgcc ttcagcgaaa tgctgatagg
    12601 ccgcagagga ttgatcctgc gctaaatcac ctgtcgcgac aatcaggtcg aattcgtgct
    12661 gatgtggacg aatcgcctcc agcaccgcct ggtagctttc ccaggtgttt acccctaaca
    12721 gggcttcgtg cttttgtgca aacaggtgag tatcggtaat ttgtaaaatc ctgactctgg
    12781 cctcaccagc cagaggaagg gttaacaggc tttccaaatg gtgtccttag gtttcacgac
    12841 gctagtaaac cggaatcgcc atcgctccat gtgctaaaca gtatcgcaac cagtccgcta
    12901 aaaactggtt aatttgatgc ttttcgtcgc gttgatgcaa ctttttatta ggataatcat
    12961 accgcgcttt gaagcgaaaa atctgctggc ttgaacacac ttcagccacc atcgcgtcat
    13021 gatacagacg caccgtcatt gacggaaggc tccagtaact gatcgcgggc gcagtctgtt
    13081 ctattgtcac cagggtagtg tatcgggtcg attccacaat cgtcagccga tattgtgcgt
    13141 ttgccacctg atagcttaca gtttcgccgg gtgcgtcatt gcgcggtaac aaacggcgca
    13201 attgtgaaaa gttcatctcg cacaggcgca tcatttcagg aaagtcaggt gtgtaacgct
    13261 tcatttatgc ccactcattt tttaacgctt gatggtgcag ctgcagccat tgcaaagcga
    13321 tgagcgacgc tgcgttgtcg attttcccct cttctaccca ctggtatgcc tgttcccggc
    13381 ttaccacatg aacgcgaata tcttcgtttt catcagccag accatgaata ccgcttgcgg
    13441 tcgtggcgtc cacttcgccc accataattg acgaacgctc actggtgccc cccgggcttg
    13501 ccaggaaact taacaccggt ttggtccgtt tgactatcag ccccgcctct tcaatcgctt
    13561 cgcgacgggc aacatcttcc acactttcac cctcttcaat catcccggca accatctcca
    13621 gtagccaggg ggtttcgcta gtgtcgtacg cggcaattcg aatctgctca atcagcacaa
    13681 cttcatcacg cactgggtca aagggtagca agactgcggc gtgaccgcgc tcaaaaattt
    13741 cccgccgcac ctcatgactc atttgcccgt tgaatagacg atgacgaaat ctataaagat
    13801 ctaatgaaaa aaagccgcga taaagtgttt ctcgtgcaat aatttctaca tcgtttttgc
    13861 caaatgtaac gggcaggttg tctggcttaa gcattgttaa tgtcctggca ctaatagtga
    13921 attaaatgtg aatttcagcg acgtttgact gccgtttgag cagtcatgtg ttaaattgag
    13981 gcacattaac gccctatggc acgtaacgcc aaccttttgc ggtagcggct tctgctagaa
    14041 tccgcaataa ttttacagtt tgatcgcgct aaatactgct tcaccacaag gaatgcaaat
    14101 gaagaaattg ctccccattc ttatcggcct gagcctttct gggttcagtt cgttgagcca
    14161 ggccgagaac ctgatgcaag tttatcagca agcacgcctt agtaacccgg aattgcgtaa
    14221 gtctgccgcc gatcgtgatg ctgcctttga aaaaattaat gaagcgcgca gtccattact
    14281 gccacagcta ggtttaggtg cagattacac ctatagcaac ggctaccgcg acgcgaacgg
    14341 catcaactcg aacgcgacca gtgcgtccct gcagttagct caatccattt ttgatatgtc
    14401 gaaatggcgt gcgttaacgc tgcaggaaaa agcagcaggg attcaggacg tcacatatca
    14461 gaccgatcag caaaccttga tcctcaacac cgcgaccgct tatttcaacg tgttgaatgc
    14521 tattgacgtt ctttcctata cacaggcaca aaaagaagcg atctaccgtc aattagatca
    14581 aaccacccaa cgttttaacg tgggcctggt agcgatcacc gacgtgcaga acgcccgcgc
    14641 gcagtacgat accgtgctgg cgaacgaagt gaccgcacgt aataaccttg ataacgcggt
    14701 agagcagctg cgccagatca ccggtaacta ctatccggaa ctggcggcgc tgaatgtcga
    14761 aaactttaaa accgacaaac cacagccggt taacgcgctg ctgaaagaag ccgaaaaacg
    14821 caacctgtcg ctgttacagg cacgcttgag ccaggacctg gcgcgcgagc aaattcgcca
    14881 ggcgcaggat ggtcacttac cgacgctgga tttaacggct tctaccggga tttctgacac
    14941 ctcttatagc ggttcgaaaa ctcgtggtgc cgctggtacc cagtatgacg acagcaatat
    15001 gggccagaac aaagtgggcc tgagcttctc gctgccgatt tatcagggcg gaatggttaa
    15061 ctcgcaggtg aaacaggccc agtacaactt tgttggtgcc agcgagcaac tggaaagcgc
    15121 gcatcgtagc atcgtgcaaa ccgtacgttc ctccttcaac aacattaatg catctatcag
    15181 tagcattaac gcctacaaac aagccgtagt ttccgctcaa agctcattag acgcgatgga
    15241 agcgggctac tcggtcggta cgcgtaccat tgttgatgtg ttggatgcaa ccaccacgct
    15301 gtacaacgct aagcaagagc tggcaaatgc gcgttataac tacctgatta atcagctgaa
    15361 tattaagtca gccctgggta cgttgaacga gcaggatctg ctggcactga acaatgcgct
    15421 gagcaaaccg gtttccacta atccggaaaa cgttgccccg caaacgccgg aacagaatgc
    15481 tattgctgat ggttatgcgc ctgatagccc ggcacccgtc gttcagcaaa catccgcacg
    15541 cactatcacc agtaacggtc ataacccttt ccgtaactga tgacgacgac ggggcttcgg
    15601 ccccgtctga acgtaagaca acgtaaagat acgggttatc tgccgcattc ttcccccttc
    15661 tcgcttcaat ttcgaccagc catcctctat tctgatgggt atttaccact ggtcccggaa
    15721 gacaaaaatg aaacggacaa aatccatacg ccacgcatcg ttccgcaaaa actggagcgc
    15781 acgccatctg acaccagtcg ctctcgcggt tgccactgtt tttatgctgg ctagctgtga
    15841 aaagagtgat gaaacagtgt ctctctatca aaatgctgac gactgttcag ctgcaaaccc
    15901 aggcaaaagc gccgaatgta ccaccgcgta caacaatgcg ctgaaagaag ccgaacgtac
    15961 tgcgccgaaa tacgccaccc gtgaagactg tgttgctgaa tttggtgaag gtcagtgcca
    16021 gcaggcacca gcccaggctg gcatggcacc agaaaaccag gcgcaggccc agcaatccag
    16081 cgggagtttc tggatgccgc tgatggccgg ttacatgatg gggcgtctga tgggcggcgg
    16141 cgcgggattt gcacagcagc cgctgttctc ctcgaaaaac ccagccagcc cggcttacgg
    16201 taaatatacc gacgcgacgg gtaaaaacta tggcgcagcc cagccaggcc gcaccatgac
    16261 cgtaccgaag acagccatgg caccaaaacc ggcgaccact actaccgtta cccgtggcgg
    16321 ttttggtgaa tctgttgcca aacaaagcac tatgcagcgt agcgcaaccg gcacctcttc
    16381 tcgttcaatg ggtggctgat accgatggaa agagtcagta ttaccgagcg cccggactgg
    16441 cgtgaaaaag cccacgaata cggtttcaat tttcacacca tgtacggcga gccgtactgg
    16501 tgtgaagatg cttactacaa gttgaccctc gcccaggttg aaaagctgga agaagtcacc
    16561 gccgaactgc accagatgtg cctgaaagtg gtggaaaaag tgatcgccag cgatgagctg
    16621 atgaccaaat tccgcattcc aaaacacacc tggagttttg tgcgtcagtc atggctgact
    16681 caccagccat cgctttattc gcgtcttgat ctggcatggg atggcactgg cgaacctaaa
    16741 ctgctggaaa ataacgccga tacaccaacg tcactatacg aggcggcgtt ctttcagtgg
    16801 atctggctgg aagatcagct taacgccggt aacttgccgg agggcagcga ccagtttaac
    16861 agtctgcaag aaaagctaat cgatcgcttt gtcgagttgc gtgaacagta tggcttccag
    16921 ttgctgcatc tcacctgctg tcgcgacacg gtggaagatc gcggaaccat tcagtatttg
    16981 caggactgcg cgacggaagc tgaaatcgct accgagttcc tctacattga cgatatcggg
    17041 ttaggtgaaa aaggtcagtt cacggattta caggatcagg taatttccaa cctgttcaag
    17101 ctgtatccat gggaatttat gttgcgtgag atgttctcca ccaagctgga ggatgcaggc
    17161 gtacgctggc tggaaccggc gtggaagagc attatctcca acaaagcgct tctaccgcta
    17221 ctgtgggaga tgttcccgaa tcacccgaac ctgctgcccg cttattttgc ggaagatgat
    17281 catccgcaaa tggaaaaata tgtggttaaa ccgatcttct cccgtgaagg cgcaaacgtg
    17341 tcgatcattg agaacggcaa aaccattgaa gcagcggaag gtccgtatgg cgaagaaggg
    17401 atgattgttc agcaattcca tccgttaccg aaattcggcg acagctatat gctgattggt
    17461 agctggctgg tgaacgatca acccgccgga attggcattc gtgaagaccg tgcattgatc
    17521 acccaggata tgtctcggtt ttatccacat atttttgttg agtaatcaat gatgccggat
    17581 ggcattcgcc atccggtaat tgttaaccta tctgcaccga cagcatactc aggctgccca
    17641 tttctatacc atcgaccgga atggtaattg gctcctgccc atcccacgca cctaagacat
    17701 acaacaacgg cagatagtgc tccggcgttg ggttcgataa cgcgccacct tcatggtcga
    17761 ggtaattcac cagaggatgc tgctctaccg ccccttgcca cgtcagattc gctttcacat
    17821 actcattaaa cgacatcgcc caaggatatg atgaactatc accgtgccac ttcactgtac
    17881 gcaggttatg caccacgttg ccactggcga ccaacattat tccttcatct cgcagcgctg
    17941 ccagtttgcg ccccatttcg aaatgccagg cggcaggttt gctactgtcg atactcaact
    18001 gcaccatcgg gatatcggcg tcaggataca tcttaatcag cacgccccag gaaccgtggt
    18061 caaagcccca ggcttcttta tccagcgtca ccgggaccgg cgctaacagc tcaaccagat
    18121 gctgtgccag cacaggcgaa cccggagcag gataatgcgt atcgtacagc gcctgcggga
    18181 agccaccaaa gtcatgaatc gtgggcggcg tctccatcgc ggtcactcct gttccacggg
    18241 taaaccagtg agccgaaacc accacaatcg cttgcgggcg tggcaatgtc atccccaact
    18301 tctgccagct gcgggtatac aaattatctt ccagcacgtt catcggacta ccgtgaccta
    18361 aaaacaatgc tggcatacgt gttgaagaca tgatgatatc cttaactaag ggtgtcattt
    18421 tgatatcctc acaatacgct tgttcggcgg agtaagaacc cggataacaa tgatgatgat
    18481 catcagttat tttgacgatc tgcctgaagg tgaagattta taaggagttg tcgatgtcag
    18541 tacctctcat tctgaccata ctggcggggg cagccacgtt tattggcgcg tttctcggcg
    18601 ttctcggaca aaaaccctcg aaccgcttac tggcgttttc gctaggtttt gcggcgggga
    18661 tcatgttgct catctcatta atggaaatgc ttcctgccgc actagcagct gaaggaatgt
    18721 cgcctgtgtt gggttatgga atgtttatct tcggtctgct tggctacttt ggcctggacc
    18781 gcatgttgcc gcatgcgcat ccgcaggatt taatgcaaaa atcggtgcag ccgttgccaa
    18841 aatcgatcaa gcgcacagcc attctgctca ctctcggcat cagtctgcat aacttcccgg
    18901 aagggattgc cacctttgtc acggcgagca gcaacctgga gctgggattt ggcatcgcac
    18961 tggccgtcgc gttgcacaat atccctgaag gtctggcagt ggcaggcccg gtttatgcgg
    19021 caacggggtc taaacgcacc gcgattctgt gggcggggat ttctggacta gcagaaattc
    19081 ttggtggtgt gctggcgtgg ttaatcctcg gtagcatgat ttccccggtg gtcatggcgg
    19141 cggttgcagg aattatggtg gcgctctcgg ttgatgaatt aatgccgctc gccaaagaga
    19201 ttgaccctaa taataacccc agctatggcg tactatgtgg aatgtcagtg atgggattca
    19261 gtttagtgct gctacaaacg gcgggaattg gttaaaaaca acatcagaag ttgtccagca
    19321 catggacaac ttctgccagc ttcacgaaag ccttattcta ccttttcggc tgtctcttct
    19381 ctcgtactgt ttaagtattt gttccgcgct tcaagcagtg cgtctctgtc ctggcgaaac
    19441 gcccgacaat aacgtttcaa atgcaggaaa taacccacca caaccagagc aatcaataca
    19501 atccagtacc aggcgataaa catcctttta cccttaatat ttaacaatac taaacattta
    19561 gcgcataaat ttcacatatc ctttttcgga tatattcata tggtcgcata ataacggaac
    19621 aattatatga ttttgatcat aatgaaaaag aatgcctgat attaatgaaa ttttctcata
    19681 gaaagagaag cggaattaac atcttgcata gcagggcaaa ataaaaaccg aagccagcta
    19741 caacttcggt ttcttgatta aggcagtaat taagcagcgg ttttcagctg gctttacgct
    19801 catgtgcctg acggtatgcc accaggtctt caatagtcac gagcgccata ttgtgtttat
    19861 tggcaaactc aatgcactct ggtgcacgcg ccatcgtgcc atcgtcatta gtcagctcac
    19921 acagcacacc agccggttta aagcctgcca gcgtcatcaa atcaatagtc gcttcagtat
    19981 gaccgccacg cgtcagtaca ccacctgcct gcgcgcgaag tgggaaaacg tggcccgggc
    20041 gattcagatc agaaggtttt gcgccatcgg caatcgctgc gcgaacggtc gtaatacgat
    20101 cagcggcaga aacaccggta gtcacacctt cagccgcttc aatggtcacg gtaaaaccgg
    20161 tgccataggc gctggtgtta ttttctacca tcattggcag atcaagttgt ttacggcgat
    20221 cttcagtgat gcacaggcaa acaataccgc taccgtggcg aatggtcagc gccatctgct
    20281 caacggtcat ggtttctgcc gggaagatca tatcgccttc gttttcacgg tcttcatcat
    20341 caagcaccat tacaccgcgt ccttcacgca gcgcagccag tgcattttca acacgttcga
    20401 aaggcgtacc aaaagaggaa agtagcgtct gattcatggt aaaaaaaact cactaaaatt
    20461 atggttacca gaatcagggc agtcttagga gtggcggcat atagccaaaa taacgtgagc
    20521 gggtccatgc ccgacagaat cgttactctc tcccatccgg actctaaccg tcggccccgg
    20581 aattacaccg gatctgctgt cctttgagtt cgcacccaaa gcgctcgcgg gctttcaact
    20641 gagttgattt accgccggtg gggaatttcg ccccgccctg agaataagcg gattcactat
    20701 aacgctaatg attagcggca gcaacgcata gcttcacata attct
//
LOCUS       DADMHM010000058        20188 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.059, whole genome shotgun sequence.
ACCESSION   DADMHM010000058 DADMHM010000000
VERSION     DADMHM010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 20188)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20188)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20188
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.059"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..254)
                     /locus_tag="JN125_001851"
     CDS             complement(<1..254)
                     /locus_tag="JN125_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001277891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871650.1"
                     /translation="MSCSRSVVLLNNALKIAVMKNGDLSLIQLGLDKEKREITESVIA
                     IYQNELNLLSDVVNLLVKRAVFHKQISSVDELTKLTTELA"
     gene            complement(254..478)
                     /locus_tag="JN125_001852"
     CDS             complement(254..478)
                     /locus_tag="JN125_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016236090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2732 family protein"
                     /protein_id="HAY8871651.1"
                     /translation="MHTVSENQCGKYALLLQQARTEAQADAATRFSSHLDAMIRHITK
                     AELSRVEIVELLSQESEKFHNIGLSRGEVL"
     gene            complement(542..1042)
                     /locus_tag="JN125_001853"
     CDS             complement(542..1042)
                     /locus_tag="JN125_001853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017441883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein B"
                     /protein_id="HAY8871652.1"
                     /translation="MTVMTLNLVEKQPAAMRRIIGKHLAVPRWQETCDYYNQMMERER
                     LTVCFHAQLKQRHATMRFEEMNDVERERLVCAIDELRGAFSKRRQVGASEYAYISFLT
                     VSQRRTLFMHAGLTEKEFNQPYWRINEESCYWRDALFRALRELFSLFEYAPTILTSVK
                     PEQYLH"
     gene            complement(1220..1495)
                     /locus_tag="JN125_001854"
     CDS             complement(1220..1495)
                     /locus_tag="JN125_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000043869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871653.1"
                     /translation="MSKQVTLMTDAIPYQEFAKLIGKSTGAVRRMIDKGKLPVIDMTD
                     PQSASGRAGEYWVYLPAWNNGLKLAYESRPKEIRDGWLMWLGLGEPR"
     gene            1610..1909
                     /locus_tag="JN125_001855"
     CDS             1610..1909
                     /locus_tag="JN125_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000020919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAY8871654.1"
                     /translation="MSNTISEKIVLMRKSEYLSRQQLADLTGVPYGTLSYYESGRSTP
                     PTDVMMNILQTPQFTKYTLWFMTNQIAPESGQIAPALAHFGQNETTSPHSGQKTG"
     gene            2025..3038
                     /locus_tag="JN125_001856"
     CDS             2025..3038
                     /locus_tag="JN125_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001755162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HAY8871655.1"
                     /translation="MAIKKLDDGRYEVDIRPTGRNGKRIRRKFDKKSEAVAFEKYTLY
                     NHHNKEWLSKPTDKRRLSELTQIWWDLKGKHEEHGKSNLGKIEIFTKITNDPCAFQIT
                     KSLISQYCATRRSQGIKPSSINRDLTCISGMFTALIEAELFFGEHPIRGTKRLKEEKP
                     ETGYLTQEEIALLLAALDGDNKKIAILCLSTGARWGEAARLKAENIIHNRVTFVKTKT
                     NKPRTVPISEAVAKMIADNKRGFLFPDADYPRFRRTMKAIKPDLPTGQATHALRHSFA
                     THFMINGGSIITLQRILGHTRIEQTMVYAHFAPEYLQDAISLNPLRGGTEAESVHTVS
                     TVE"
     gene            complement(3304..3621)
                     /locus_tag="JN125_001857"
     CDS             complement(3304..3621)
                     /locus_tag="JN125_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416589.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871656.1"
                     /translation="MKKIAAISLTSVFLISGCAVHNDETSIGKFGLAYKSNIQRKLDN
                     QYYTEAEASLARGRISGAENIVKNDATHFCVTQGKKMQIVELKTEGVGLHGVARLTFK
                     CGE"
     gene            4027..4926
                     /gene="yegS"
                     /locus_tag="JN125_001858"
     CDS             4027..4926
                     /gene="yegS"
                     /locus_tag="JN125_001858"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid kinase YegS"
                     /protein_id="HAY8871657.1"
                     /translation="MAEFPASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKG
                     DAARFVEEARKLGVATVIAGGGDGTINEVSTALIQCEGDDIPALGILPLGTANDFATS
                     VGIPEALDKALKLAIAGNAIAIDMAQVNKQTCFINMATGGFGTRITTETPEKLKAALG
                     GVSYIIHGLMRMDTLQPDRCEIRGENFHWQGDALVIGIGNGRQAGGGQQLCPNALIND
                     GLLQLRIFTGDEILPALVSTLKSDEDNPNIIEGASSWFDIQAPHEITFNLDGEPLSGQ
                     NFHIEILPAALRCRLPPDCPLLR"
     gene            complement(5008..5787)
                     /locus_tag="JN125_001859"
     CDS             complement(5008..5787)
                     /locus_tag="JN125_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HAY8871658.1"
                     /translation="MTMNSFERRNKIIQLVNEQGTVLVQDLAGVFAASEATIRADLRF
                     LEQKGVVTRFHGGAAKIMSGNSETETQEVGFKERFQLASAPKNRIAQAAVKMIHEGMT
                     VILDSGSTTMLIAEGLMTAKNITVITNSLPAAFALSENKDITLVVCGGTVRHKTRSMH
                     GSIAERSLQDINADLMFVGADGIDAVNGITTFNEGYSISGAMVTAANKVIAVLDSSKF
                     NRRGFNQVLPIEKIDIIITDDAVSEVDKLALQKTRVKLITV"
     gene            complement(5887..6927)
                     /gene="gatD"
                     /locus_tag="JN125_001860"
     CDS             complement(5887..6927)
                     /gene="gatD"
                     /locus_tag="JN125_001860"
                     /EC_number="1.1.1.251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HAY8871659.1"
                     /translation="MKSVVNDTDGIVRVAESVIPEIKHQDEVRVKIASSGLCGSDLPR
                     IFKNGAHYYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQ
                     CAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGLHAFHLAQGCE
                     NKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKFFGAMQTFNSSEMSAP
                     QMQSVLRELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKI
                     LRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFTQAVRDIA
                     RNAMPGKVLLIP"
     gene            complement(6975..8330)
                     /locus_tag="JN125_001861"
     CDS             complement(6975..8330)
                     /locus_tag="JN125_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactitol permease IIC component"
                     /protein_id="HAY8871660.1"
                     /translation="MFSEVMRYILDLGPTVMLPIVIIIFSKILGMKAGDCFKAGLHIG
                     IGFVGIGLVIGLMLDSIGPAAKAMAENFDLNLHVVDVGWPGSSPMTWASQIALVAIPI
                     AILVNVAMLLTRMTRVVNIDIWNIWHMTFTGALLHLATGSWMIGMAGVVIHAAFVYKL
                     GDWFARDTRNFFELEGIAIPHGTSAYMGPIAVLVDAIIEKIPGVNRIKFSADDIQRKF
                     GPFGEPVTVGFVMGLIIGILAGYDVKGVLQLAVKTAAVMLLMPRVIKPIMDGLTPIAK
                     QARSRLQAKFGGQEFLIGLDPALLLGHTAVVSASLIFIPLTILIAVCVPGNQVLPFGD
                     LATIGFFVAMAVAVHRGNLFRTLISGVIIMSITLWIATQTIGLHTQLAANAGALKAGG
                     MVTSMDQGGSPITWLLIQVFSPQNIPGFIIIGAIYLTGIFMTWRRARGFIKQEKVVLA
                     E"
     gene            complement(8334..8618)
                     /gene="gatB"
                     /locus_tag="JN125_001862"
     CDS             complement(8334..8618)
                     /gene="gatB"
                     /locus_tag="JN125_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIB"
                     /protein_id="HAY8871661.1"
                     /translation="MKRKIIVACGGAVATSTMAAEEIKELCQNHNIPVELIQCRVNEI
                     ETYMDGVHLICTTAKVDRSFGDIPLVHGMPFISGIGIEALQNKILTILQG"
     gene            complement(8649..9101)
                     /gene="gatA"
                     /locus_tag="JN125_001863"
     CDS             complement(8649..9101)
                     /gene="gatA"
                     /locus_tag="JN125_001863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIA"
                     /protein_id="HAY8871662.1"
                     /translation="MTNLFVRSGISFVDRSEVLTHIGNEMLAKGVVHDTRPQALIARE
                     AEFPTGIMLEQHAIAIPHCEAIHAKSSAIYLLRPTNKVHFQQADDDNDVEVSLVIALI
                     VENPQQQLKLLRCLFGKLQQPDIVETLITLPETQLKEYFTKYVLDSDE"
     gene            complement(9111..10373)
                     /gene="gatZ"
                     /locus_tag="JN125_001864"
     CDS             complement(9111..10373)
                     /gene="gatZ"
                     /locus_tag="JN125_001864"
                     /EC_number="4.1.2.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase subunit GatZ"
                     /protein_id="HAY8871663.1"
                     /translation="MKTLIARHKAGEHIGICSVCSAHPLVIEAALAFDRNSTRKVLIE
                     ATSNQVNQFGGYTGMTPADFREFVFTIADKVGFARERIILGGDHLGPNCWQQENADAA
                     MEKSVELVKAYVRAGFSKIHLDASMSCAGDPIPLAPETVAERAAVLCFAAESVATDCQ
                     REQLSYVIGTEVPVPGGEASAIQSVHITHVEDAANTLRTHQKAFIARGLTEALTRVIA
                     IVVQPGVEFDHSNIIHYQPQEAQALAQWIENTRMVYEAHSTDYQTRTAYWELVRDHFA
                     ILKVGPALTFALREAIFALAQIEQELIAPENRSGCLAVIEEVMLDEPQYWKKYYRTGF
                     NDSLLDIRYSLSDRIRYYWPHSRIKNSVETMMVNLEGVDIPLGMISQYLPKQFERIQS
                     GELSAIPHQLIMDKIYDVLRAYRYGCAE"
     gene            complement(10402..11256)
                     /gene="gatY"
                     /locus_tag="JN125_001865"
     CDS             complement(10402..11256)
                     /gene="gatY"
                     /locus_tag="JN125_001865"
                     /EC_number="4.1.2.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416599.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase subunit GatY"
                     /protein_id="HAY8871664.1"
                     /translation="MYVVSTKQMLNNAQRGGYAVPAFNIHNLETMQVVVETAANLHAP
                     VIIAGTPGTFTHAGTENLLALVSAMAKQYHHPLAIHLDHHTKFDDIAQKVRFGVRSVM
                     IDASHLPFAQNISRVKEVVDFCHRFDVSVEAELGQLGGQEDDVQVNEADAFYTNPAQA
                     REFAEATGIDSLAVAIGTAHGMYASAPALDFSRLENIRQWVNLPLVLHGASGLSTKDI
                     QQTIKLGICKINVATELKNAFSQALKNYLTEHPEATDPRDYLQSAKSAMRDVVSKVIA
                     DCGCEGRA"
     gene            complement(11564..12616)
                     /gene="fbaB"
                     /locus_tag="JN125_001866"
     CDS             complement(11564..12616)
                     /gene="fbaB"
                     /locus_tag="JN125_001866"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006820796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I fructose-bisphosphate aldolase"
                     /protein_id="HAY8871665.1"
                     /translation="MTDIAQLLGKDADNLLQHRCMTIPSDQLYLPGHDYVDRVMIDNN
                     RPPAVLRNMQTLYNTGRLAGTGYLSILPVDQGVEHSAGASFAANPLYFDPKNIVELAI
                     EAGCNCVASTYGVLASVSRRYAHRIPFLVKLNHNETLSYPNTYDQTLYASVEQAFNMG
                     AVAVGATIYFGSEESRRQIEEISAAFERAHELGMVTVLWAYLRNSAFKKDGVDYHVSA
                     DLTGQANHLAATIGADIVKQKMAENNGGYKAINYGYTDDRVYSKLTSENPIDLVRYQL
                     ANCYMGRAGLINSGGAAGGETDLSDAVRTAVINKRAGGMGLILGRKAFKKSMADGVKL
                     INAVQDVYLDSKITIA"
     gene            12873..14150
                     /locus_tag="JN125_001867"
     CDS             12873..14150
                     /locus_tag="JN125_001867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside permease"
                     /protein_id="HAY8871666.1"
                     /translation="MKTTAKLSFMMFVEWFIWGAWFVPLWLWLSKSGFSAGEIGWSYA
                     CTAIAAILSPILVGSITDRFFSAQKVLAVLMFAGALLMYFAAQQTTFAGFFPLLLAYS
                     LTYMPTIALTNSIAFANVPDVERDFPRIRVMGTIGWIASGLACGFLPQILGYADISPT
                     NIPLLITAGSSALLGVFAFFLPDTPPKSTGKMDIKVMLGLDALILLRDKNFLVFFFCS
                     FLFAMPLAFYYIFANGYLTEVGMKNATGWMTLGQFSEIFFMLALPFFTKRFGIKKVLL
                     LGLVTAAIRYGFFIYGSADEYFTYALLFLGILLHGVSYDFYYVTAYIYVDKKAPVHMR
                     TAAQGLITLCCQGFGSLLGYRLGGVMMEKMFAYQEPVNGLTFNWSGMWTFGAVMIAII
                     AVLFMIFFRESDNEITAIKVDDRDIALTQGEVK"
     gene            14147..15151
                     /locus_tag="JN125_001868"
     CDS             14147..15151
                     /locus_tag="JN125_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-ribosylglycohydrolase family protein"
                     /protein_id="HAY8871667.1"
                     /translation="MKTERILGALYGQALGDAMGMPSELWPRSRVKAHFGWIDRFLPG
                     PKENNAACYFNRAEFTDDTSMALCLADALLEREGKIDPNLIGRNILDWALRFDAFNKN
                     VLGPTSKIALNAIRDGKPVAELENNGVTNGAAMRVSPLGCLLPARDVDSFIDDVALAS
                     SPTHKSDLAVAGAVVIAWAISRAIDGESWSAIVDSLPSIARHAQQKRITTFSASLAAR
                     LEIALKIVRNADGTESASEQLYQVVGAGTSTIESVPCAIALVELAQTDPNRCAVLCAN
                     LGGDTDTIGAMATAICGALHGINAIDPPLKAELDAVNQLDFNRYATALAKYRQQREAV
                     "
     gene            15148..16098
                     /locus_tag="JN125_001869"
     CDS             15148..16098
                     /locus_tag="JN125_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HAY8871668.1"
                     /translation="MSGARLHTLLPELTTRQSVMVVGAAVIDVIADAYVLPWRGCDIE
                     LKQQSVNVGGCALNIAVALKRLGIEAGNALPLGQGVWAEIIRNRMAKEGLISLIDNAE
                     GDNGWCLALVEPDGERTFMSFSGVENQWNRQWLARLTVAPGSLLYFSGYQLASPCGEL
                     LVEWLEELQDVTPFIDFGPRIGDIPDALLARIMACRPLVSLNRQEAEIAAERFALSAE
                     ITTLGKQWQEKFAAPLIVRLDKEGAWYFSNDASGCIPAFPTQVVDTIGAGDSHAGLAS
                     GLPLADAVLLGNAVASWVVGHRGGDCAPTREELLLAHKNV"
     gene            complement(16072..16818)
                     /locus_tag="JN125_001870"
     CDS             complement(16072..16818)
                     /locus_tag="JN125_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAY8871669.1"
                     /translation="MEQAHTQLIAQLNERILAADNTPLYIKFAETVKNAVRSGVLEHG
                     NILPGERDLSQLTGVSRITVRKAMQALEEEGVVTRSRGYGTQINNIFEYSLKEARGFS
                     QQVVLRGKKPDTLWVNKRVVKCPEEVAQQLAVEAGSDVFLLKRIRYVDEEAVSIEESW
                     VPAHLIHDVDAIGISLYDYFRSQHIYPQRTRSRVSARMPDAEFQSHIQLDSKIPVLVI
                     KQVALDQQQRPIEYSISHCRSDLYVFVCEE"
     gene            complement(16870..17688)
                     /locus_tag="JN125_001871"
     CDS             complement(16870..17688)
                     /locus_tag="JN125_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416605.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl hydrolase 25 family protein"
                     /protein_id="HAY8871670.1"
                     /translation="MQLRITSRKKLTALLCALGLISIVAIYPRQTVNFFYSTAVQITD
                     YIHFYGYRPVKSFAIRIPASYTIHGIDVSRWQERIDWQRVAKMRDNGIRLQFAFIKAT
                     EGEKLVDPYFSRNWQLSRENGLLRGAYHYFSPSVAAPVQVRLFLQTVDFSQGDFPAVL
                     DVEERGKLSAKELRKRVSQWLKMVEKSTGKKPIIYSGAVFYHTNLAGYFNEYPWWVAH
                     YYQRRPDNDGMAWRFWQHSDRGQVDGINGPVDFNVFNGTVEELQGFVDGIKETP"
     gene            complement(17753..18553)
                     /gene="thiD"
                     /locus_tag="JN125_001872"
     CDS             complement(17753..18553)
                     /gene="thiD"
                     /locus_tag="JN125_001872"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HAY8871671.1"
                     /translation="MKRINALTIAGTDPSGGAGIQADLKTFSALGAYGCSVITALVAQ
                     NTRGVQSVYRIEPDFVAAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLQRYQIQNV
                     VLDTVMLAKSGDPLLSPSAVATLRSRLLPQVSLITPNLPEAAALLDAPHARTEQEMLE
                     QGRSLLAMGCGAVLMKGGHLDDEQSPDWLFTREGEQRFTAPRIMTKNTHGTGCTLSAA
                     LAALRPRHTNWADTVQEAKSWLSSALAQADTLEVGHGIGPVHHFHAWW"
     gene            complement(18550..19338)
                     /gene="thiM"
                     /locus_tag="JN125_001873"
     CDS             complement(18550..19338)
                     /gene="thiM"
                     /locus_tag="JN125_001873"
                     /EC_number="2.7.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyethylthiazole kinase"
                     /protein_id="HAY8871672.1"
                     /translation="MQVDLLSSAQSAHTLHLFHQHSPLVHCMTNDVVQTFTANTLLAL
                     GASPAMVIETEEASQFAAIASALLINVGTLTQPRAQAMRAAVEQAKSSQTPWTLDPVA
                     VGALDYRRRFCLELLSHKPTAIRGNASEIMALAGVANGGRGVDTTDAAANAIPAAQTL
                     ARETGAIVVVTGEVDYVTDGHRIVGIHGGDPLMTKVVGTGCALSAVVAACCALPGDML
                     ENVASACHWMKQAGERAVARSEGPGSFVPHFLDALWQLTQEVQA"
     regulatory      complement(19373..19469)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(19561..19833)
                     /gene="rcnR"
                     /locus_tag="JN125_001874"
     CDS             complement(19561..19833)
                     /gene="rcnR"
                     /locus_tag="JN125_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni(II)/Co(II)-binding transcriptional repressor
                     RcnR"
                     /protein_id="HAY8871673.1"
                     /translation="MSHTIRDKQKLKARASKIQGQVVALKKMLDEPHECAAVLQQIAA
                     IRGAVNGLMREVIKGHLTEHIVHQGDELKREEDLDVVLKVLDSYIK"
     gene            19955..>20188
                     /locus_tag="JN125_001875"
     CDS             19955..>20188
                     /locus_tag="JN125_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871674.1"
                     /translation="MTEFTTLLQQGNAWFFIPSAILLGALHGLEPGHSKTMMAAFIIA
                     IKGTIKQAVMLGLAATISQTAVVWLIAFGGMVIS"
BASE COUNT         5141 a         5155 c         4724 g         5168 t
ORIGIN      
        1 ctggcaagtt ctgtcgttaa ttttgtcagt tcatccactg aggaaatttg cttgtggaat
       61 acagcgcgtt taacaagtaa attgaccaca tcagacagga ggtttaattc gttctgataa
      121 atcgcgataa cagactcagt tatttcgcgt ttttctttat caagaccaag ttgaataaga
      181 gacaaatcgc catttttcat aacggcgatt tttaaggcgt tattcagtaa tacaactgaa
      241 cgagaacagg acatcaaagc acctccccgc gagacaatcc gatattgtga aatttttccg
      301 actcctgact gagcagctcg actatctcca cgcgggataa ctccgccttt gtgatgtggc
      361 gaatcatggc atcaagatga gaagaaaagc gcgtcgcagc gtcggcctgt gcttcggttc
      421 tggcctgttg cagcagtaat gcgtatttac cgcactgatt ttcagaaact gtatgcataa
      481 ctttctccag gcaaaaagaa gccccgcacg attaagtgcg ttaaaaactc tggttaatta
      541 cttaatgcag atattgctct ggttttaccg acgtcagaat tgtcggtgca tactcaaaca
      601 ggctgaataa ttcacgtaat gcacggaata aagcatcacg ccagtaacat gactcttcat
      661 taattcgcca gtatggctgg ttgaattctt tttcagtcaa tccggcatgc ataaataaag
      721 tacgacgctg actgactgtt aaaaaactaa tatatgcata ctcacttgcg ccaacctgac
      781 ggcgttttga gaatgcccca cgcaattcat caattgcaca taccagtcgt tcacgttcga
      841 catcattcat ttcttcaaaa cgcatcgttg cgtgacgctg ttttaactgc gcatggaagc
      901 aaaccgttag ccgttcacgt tccatcatct gattataata atcgcatgtc tcctgccagc
      961 gagggacggc cagatgctta ccaattatcc ggcgcatagc tgctggctgt ttttcaacaa
     1021 gattgagcgt catcactgtc atttccagac cctccgactt ttcagaaagg tcagagcctt
     1081 ctttaacgga ctctgttttt tggtgcggat aatgattccc ttgcgtccct taccgtgggt
     1141 aatggtgaag tcaatcgccc tggggctttc gttacgcagt aactgagcaa tacaacgagg
     1201 ctcattcata cggttctcct taacgtggtt caccgagacc taaccacatc aaccagccgt
     1261 cacgaatctc tttagggcgg ctttcataag ccagttttag tccgttattc catgccggaa
     1321 ggtataccca atattcacct gcacgacctg aagctgattg tggatcggtc atatcaatta
     1381 caggcagctt tcctttatcg atcatccgac gaaccgctcc tgtcgatttt cctattagtt
     1441 ttgcgaactc ctgataagga atcgcatcag tcatgagtgt tacttgcttg ctcatgtcgt
     1501 cctccagccc tcatgaattg cgtttaatgc cttataatgc cttttagtgc ccacatccaa
     1561 gcactaaaca atctacatct aaactaaata ctattgagat ctaaacacta tgtcaaacac
     1621 gataagcgag aagatagtct taatgcgaaa atctgagtat ttgagcagac aacaacttgc
     1681 tgatttaaca ggggttccgt atggcacgct gagttactat gaaagtggtc gttcaacacc
     1741 tccaacagat gtcatgatga acatcctgca gaccccacaa ttcaccaaat acactttatg
     1801 gttcatgaca aatcagatcg ctcctgagtc cgggcaaatt gcgcccgctc tcgcacactt
     1861 tgggcaaaac gaaacaacgt cgccccactc cggtcaaaag actggttaac aatttatcgt
     1921 gaatatattc atcacaagtg cctactattg gtggctaaat ttcagccacc acgaaaaaag
     1981 cgattagtag tagcaaaaaa aagtaccact cggagggttt tctgatggca atcaaaaaac
     2041 tcgatgatgg tcgatatgaa gtggacatcc gccctactgg acgtaacgga aaacgcatcc
     2101 gtaggaagtt tgataagaaa agcgaagctg tcgctttcga aaaatacacg ttgtacaacc
     2161 accacaataa agaatggcta tcaaaaccaa cagacaaacg acgtctgtcg gaactgacac
     2221 agatctggtg ggatttaaag ggtaaacacg aagagcatgg gaaatctaat cttggaaaaa
     2281 ttgaaatctt cacaaaaata acgaatgacc catgcgcatt tcaaatcacg aaatccctta
     2341 tcagccagta ctgcgccacc cgaagaagtc agggtattaa accttcgagt atcaatcgtg
     2401 atttaacatg tattagcggc atgtttacag ccctgattga agcggagtta ttctttggtg
     2461 agcaccctat cagagggaca aagaggctta aggaggaaaa accagaaaca ggctatctca
     2521 cacaggaaga aattgcctta ctgcttgcag cacttgacgg cgacaataaa aagattgcga
     2581 ttctttgcct gagtacagga gcacgttggg gagaagcagc tcgtttgaaa gcagaaaata
     2641 tcatccataa ccgcgtcacg tttgttaaaa cgaaaacaaa caaaccacgc accgtcccga
     2701 tctcagaggc tgttgccaaa atgatcgcgg ataacaaacg aggtttttta ttccctgatg
     2761 ctgattaccc tcgcttcaga cgaacaatga aagcaataaa accggatttg ccaacggggc
     2821 aagccacaca tgcactaagg cacagctttg ccactcattt catgattaat ggaggaagta
     2881 ttatcacgct acaacggata ctaggtcaca cgcggattga gcaaactatg gtttacgctc
     2941 attttgcgcc agagtacctt caggacgcca tttctcttaa tccgctaaga ggtggtactg
     3001 aggccgagag tgtccacaca gtgtccacag tagagtaacg tttaagggct ttcagtggta
     3061 atttatgccg ctcaaacccg cattgtaccg ttgaaagccc ctactggtga caccctaaat
     3121 ctcccttaca cgggcttatt tttttatgca taagccctat ctctggtaac cgtcttccat
     3181 tgaccacatc gatagaatcc tccttcatag cacgatgcct ttcacttatc ggcatcgtgc
     3241 tcccacaggt tccggctacg cacagccaga acgcgcatag ttgacgctta ccaaaaaata
     3301 ttctcactct ccacatttga atgtcagacg agcgacacca tgtaatccta caccttctgt
     3361 cttcagctca actatttgca tttttttgcc ctgagtaaca cagaaatgag ttgcatcatt
     3421 ttttactata ttttctgcac cagatattct acccctggct aaagaagctt cggcttcggt
     3481 gtagtattgg ttatcgagtt tacgctgaat attactttta tatgcaagac caaatttacc
     3541 gatacttgtc tcatcattat gcacagcaca accagatata agaaaaacac tagttaatga
     3601 tatagcagct atctttttca tctcaccttc ccccattaaa taccaacgac actctctagt
     3661 gtttaaatat aataatggca tgattattat aattgaatag gattataata aatgttctgt
     3721 acaacatttc ctacataagt aggaattacg gacattgagg cccttcaggg taactccatg
     3781 ggggctttaa tatattatat tgaagatgcc actgtttagt tgaatattag gtatatgctc
     3841 ttttttgaaa tttatcggtg gttaccgtta atattcgctg ttcccattgc aagctcctgg
     3901 tggtaaccac tgaatcctcc atacttgaac tgacttttta tcctccgact ttcatcctgt
     3961 tctgactcca ccttttcttt tctgctctac actatctaca gaccaatcat aaaggcacat
     4021 acgatcatgg cagaatttcc cgccagctta ctgattctta atggcaaaag tactgacaat
     4081 ctacccttgc gcgaagcaat tatgctgttg cgtgaggaag gaatgacgat ccatgtgcgg
     4141 gtcacctggg agaaaggtga tgccgcacga tttgtagagg aggcccggaa gttgggcgtc
     4201 gcaacggtga ttgccggtgg tggcgatggc accattaatg aagtttctac ggcgttgatt
     4261 cagtgtgagg gggatgacat acccgcgctg ggaattttgc cattaggaac cgccaatgat
     4321 tttgccacca gtgtagggat tcctgaggca ctggataagg cgctgaaact ggcaattgcc
     4381 ggtaatgcca ttgcgataga tatggcgcag gtcaacaaac aaacctgttt tattaatatg
     4441 gcgacaggcg ggtttgggac gcgtattacc acagaaacgc cggaaaaatt aaaagccgcg
     4501 ctgggtggcg tctcatacat cattcatggc ttaatgcgta tggatactct gcaaccggac
     4561 cgttgtgaaa tccgcggtga aaactttcac tggcaaggtg acgccctggt cattggtatt
     4621 ggtaacgggc gtcaggccgg tggcggtcaa caattgtgcc cgaacgcgtt aattaacgat
     4681 ggcttgctgc aactgcgcat ttttaccggc gatgaaattc ttccggctct cgtatcaact
     4741 ttaaaatctg acgaagataa cccgaatatt atcgaaggcg cttcgtcgtg gtttgatata
     4801 caagctccac acgaaatcac ttttaatctt gatggcgaac cgttgagtgg acaaaacttt
     4861 catattgaaa tacttccggc ggcgttgcgt tgtcgattac caccagattg tccattattg
     4921 cgttaatcaa actattctct cttgaaccag ggagaatccg taatgccgga tgaggtgtaa
     4981 ataccttatc cggcatacag aacaatacta caccgtaatt aattttaccc gtgtcttctg
     5041 caatgccagt ttatccacct ctgatacagc atcatcggta ataataatgt caattttttc
     5101 gattggcagt acctgattaa aaccgcgacg gttaaatttc gatgaatcga gaacggcaat
     5161 cactttatta gcggcggtga ccatcgcacc gctaatcgaa taaccttcat taaaggtcgt
     5221 aataccatta accgcatcaa taccatcagc accgacaaac attaaatcgg cattaatatc
     5281 ctgcaatgaa cgctcggcaa tggaaccatg catcgagcgc gttttatggc ggaccgtgcc
     5341 accacagacg accagagtaa tgtctttatt ttcggaaagg gcaaacgctg ccgggagact
     5401 gttggtaatc accgtgatat ttttagcggt cattaatcct tcggcgataa gcattgtggt
     5461 acttccgctg tcgagaataa cggtcatccc ttcatggatc attttgactg ccgcctgcgc
     5521 tattctgttt tttggcgcgc tggcgagctg aaatcgctct ttaaacccga cttcctgggt
     5581 ctcggtttca ctattaccgg acattatttt cgccgcaccg ccatgaaagc gcgtaaccac
     5641 gcctttttgt tcgagaaagc gcaaatcggc acggattgtc gcttccgagg cagcaaatac
     5701 tcccgccaga tcctgaacaa gcacggttcc ctgttcattc actaattgga tgatcttatt
     5761 ccttcgctcg aatgaattca tcgtcattta cccatattca attgtggcta gtgtaaacga
     5821 agggggacca ttggtgaatg atctgttttg cacaataccg ggccagcatc acgctggccc
     5881 gcggtttcat ggaatgagca acactttgcc cggcatggca ttacgagcga tgtcacgcac
     5941 cgcctgggtg aagctttcaa agcttccacg gtgagcgatt aatggctcca ggcttaactt
     6001 acgttctgtc agcaaccggc tcgccgtttc ccactcctgc cccggccaag ggctggaata
     6061 gttcatccaa ctgccgataa ccgtcagctc tttacgcaat attttgccaa acgttgccga
     6121 tgttaaatgc agatcctgat gcaacgtgcc caccagcgcc agttgggcat gaggaccggc
     6181 aatctctacc gccagttcga cagtttgcgg tacgccagcc gtctcgagga taagctgatt
     6241 aaaacgcagt tcgcgtaaaa cgctctgcat ttgcggcgcg ctcatttcgc tactgttaaa
     6301 tgtttgcatc gcaccgaaaa attttgccag tgccagtttt tctgagctaa tgtcgatagc
     6361 cgtcacactc tttgctccca gcgcgacagc gcactgaata gccagcaggc caatggttcc
     6421 ggcaccaata ataataacgt ttttattctc acaaccttgc gctaaatgaa aagcatgcag
     6481 accaacggta atcggctcaa taaaagcccc atcctcaata ggcatatccg tgggtagagc
     6541 aaagacattt tttcgcttaa cgacaatata ttcagcaaat ccaccatcac gccgcgagcc
     6601 aataaaatca tattttgcgc actgggaata aaaccctttc agacactctg gacaagtaaa
     6661 acagggtaat aacggcacac aggcaaccgc atcgccaggg tgtaaatcat caacaccgga
     6721 tcccaccgca tcaatatagc cgctaaattc atggcctaac gttattggat aataatgtgc
     6781 accattttta aatatcctgg gtaaatcgga accacataag cccgagctgg caatttttac
     6841 ccgcacctca tcctgatgtt taatttcagg aatgacgctt tctgcaacgc gcacgatacc
     6901 atcagtatca ttcaccactg atttcataaa aactcctgat tgttaagggg gataacctcc
     6961 ccctcaggta aaaattattc tgcgagaacg actttctctt gtttaataaa gccacgcgct
     7021 ctacgccagg tcatgaaaat accggtcaga taaattgcac cgataataat gaaaccggga
     7081 atattttgcg gggagaaaac ctgaatcagt aaccaggtaa tgggagaacc gccctgatcc
     7141 attgaagtca ccataccccc ggcttttaac gccccagcat tagccgccag ttgggtgtgc
     7201 aaaccaatag tttgcgtcgc gatccacaga gtgatgctca tgatgatgac acccgagatt
     7261 aaggtgcgga acagatttcc acgatgcacg gcgactgcca tcgccacaaa gaagccgatg
     7321 gtggcaagat cgccaaacgg cagcacctga ttacccggaa cacaaacagc aattaaaatg
     7381 gtgagcggga taaaaatcag gcttgccgat accaccgccg tatgccccag cagtaatgcg
     7441 ggatccaggc caatcaggaa ctcctgaccg ccgaacttcg cctgtaaacg actacgggcc
     7501 tgcttagcga tgggcgttaa accatccatg atgggtttaa tcacccgtgg cattagcagc
     7561 atcactgccg ccgtttttac cgccagctgc aatacacctt tgacatcgta acccgcgagg
     7621 atgccgataa tcagccccat cacaaaaccc acggtgacag gctcgccaaa tggaccaaat
     7681 ttgcgctgaa tatcgtcggc gctaaattta attcggttaa cgcctgggat tttctcgatg
     7741 atagcatcga ccagcaccgc aatcggcccc atatacgccg acgtaccgtg cggaatagca
     7801 ataccttcca gctcaaagaa atttcgggta tcgcgggcaa accagtcgcc gagcttataa
     7861 acaaacgccg cgtgaattac cacacctgcc atccctatca tccatgaacc ggttgccaga
     7921 tgcagcaacg cgccggtgaa ggtcatatgc cagatattcc agatatcaat atttaccacc
     7981 cgcgtcatac gggtcagtaa catcgccacg ttaaccagaa tcgcaatcgg aatcgccacc
     8041 agcgcaattt gcgacgccca ggtcattggt gaagagcccg gccagccgac atcgaccaca
     8101 tgcagattca ggtcgaaatt ttccgccatc gctttcgccg ccggaccaat ggaatccagc
     8161 attaagccaa tcacaaggcc aatgccaaca aagccaatcc cgatatgcag acccgcttta
     8221 aagcaatcgc ctgccttcat gcctaatatt ttagaaaaaa taatgatgac aatcggaagc
     8281 atcaccgtag ggccgaggtc gagaatataa cgcatgactt ctgaaaacat aggtcacccc
     8341 tgtaagatag tcagaatttt attttgtaat gcttcgatac cgataccaga aataaaaggc
     8401 atgccgtgaa ctaacggaat atcgccaaaa ctacgatcca ctttggcagt ggtgcatatc
     8461 aaatgcacac catccatata ggtttctatt tcattaaccc gacactggat taattcaaca
     8521 ggaatattat gattctgaca caactcttta atttcttccg ccgccatcgt agaggtcgca
     8581 accgcgcctc cgcaagcgac aataatcttg cgtttcataa atagtccttt ttattgttac
     8641 agagggattt attcgtctga atctaaaaca tactttgtga agtattcctt taactgggtt
     8701 tcaggaagag tgattagtgt ctcgacgata tcgggctgtt gtaacttgcc aaataaacag
     8761 cgtaaaagtt tcaattgctg ctgcggattt tccacaatca acgcaataac caacgatacc
     8821 tccacgtcgt tatcatcatc cgcttgctga aaatgaactt tatttgttgg ccttaacaga
     8881 taaatggctg acgacttagc atgaatcgcc tcacaatgcg gtattgcaat ggcgtgctgc
     8941 tcaagcatta tcccggtagg gaattctgct tctctggcaa ttaatgcctg tggcctggta
     9001 tcatgaacca cacctttggc gagcatctca ttaccgatat gggttaaaac ttcgctacga
     9061 tcgacaaaag aaattccgct acgaacaaac aggttagtca tataccgtcc ttattccgca
     9121 cagccgtagc gataggcgcg caaaacatca taaattttat ccataatcag ctgatgcggt
     9181 attgctgata attccccgga ctgaatgcgt tcaaattgtt tgggaagata ctgactaatc
     9241 atgcccagtg ggatgtccac gccttcaaga ttcaccatca tcgtttcgac gctattttta
     9301 atccgactat gcggccagta ataacgaata cgatccgaca ggctgtaacg aatatccagt
     9361 aatgaatcgt taaaacccgt acgataatat tttttccagt attgcggttc gtcgagcatc
     9421 acttcttcaa ttaccgccag gcaaccgctg cgattttcgg gggcgataag ttcctgctca
     9481 atttgtgcca gtgcaaatat cgcctcgcgt aaagcaaagg ttaatgcggg accgactttc
     9541 aatattgcaa agtgatcgcg gactaattcc caataagccg ttcgggtctg gtaatcggta
     9601 gaatgtgctt cataaaccat tcgggtgttt tctatccatt gcgccagcgc ctgcgcttcc
     9661 tgcggctgat aatggataat attgctgtga tcaaattcca cacccggctg caccacgatg
     9721 gcaatcacac gtgttaacgc ctctgtcagc ccacgggcaa taaaggcctt ttgatgcgta
     9781 cgtaaagtat tggcggcatc ttcaacatgg gtgatgtgta ctgactgaat ggcgctggcc
     9841 tcaccgcccg gaaccggaac ttcggtgcca atgacatagc tcagttgctc acgctggcaa
     9901 tctgtcgcca cactttccgc agcaaagcaa agcacagcag ctcgttccgc aaccgtttct
     9961 ggtgctaacg gtatgggatc ccccgcgcag gacattgacg catcaagatg aattttactg
    10021 aagccagcac gaacatatgc ttttaccagc tcgacggatt tttccatcgc cgcatccgca
    10081 ttttcttgct gccagcagtt tggccccaga tgatcgccgc cgagaataat gcgttcgcgt
    10141 gcaaacccaa ctttatcggc aatcgtaaaa acaaattcgc gaaagtctgc cggtgtcatt
    10201 ccggtataac cgccaaattg attgacctgg tttgacgttg cttcaatcag cactttgcgc
    10261 gtgctgttgc gatcaaatgc cagcgccgct tcgataacca acggatgggc agaacagact
    10321 gaacatatgc cgatatgttc accagcttta tgccgggcaa ttaacgtttt catgtttttt
    10381 ccttgttaaa tggcaggtgc gttatgccct gccctcgcag ccacaatcgg caatcacttt
    10441 gctcaccaca tcgcgcattg cggatttagc cgactgcaaa taatcccggg gatcggtcgc
    10501 ttcggggtgc tcggtcaggt aattttttaa cgcctgcgag aaggcatttt tcagctccgt
    10561 tgcaacgttg attttgcata tccccagttt gatggtttgc tgaatatcct tagtcgataa
    10621 tcctgacgcg ccatgcagca ccagcggtaa gttcacccac tggcgaatgt tctccagtcg
    10681 agaaaaatca agcgccggtg cgctggcata cataccatga gccgtgccga tggcgaccgc
    10741 cagggaatca attccggttg cctcggcaaa ttcacgcgcc tgagcggggt tggtataaaa
    10801 agcatcggct tcattgactt gcacatcatc ttcctggccg ccaagttgcc ccagctccgc
    10861 ttcgacgctg acatcaaagc gatggcaaaa atccaccacc tctttgaccc gtgaaatatt
    10921 ttgcgcaaaa ggcaaatgcg aggcgtcaat catgactgag cgcacgccaa aacgaacctt
    10981 ctgagcgata tcgtcaaatt tcgtgtgatg gtcgagatga attgccagtg gatggtgata
    11041 ttgcttcgcc atcgcgctga ccagcgccaa cagattttct gtaccagcat gagtaaatgt
    11101 gccaggcgtt ccggcgatga tgaccggcgc atgcaggttg gcagcggttt ccaccaccac
    11161 ttgcatcgtt tcgagattgt gaatattgaa tgccggaacc gcataaccgc cgcgctgtgc
    11221 gttgttcagc atctgctttg tcgataccac gtacattttc atatcctgct gtttgttttc
    11281 gatttcaaaa tataatgaaa ttatttgttt ttaaatatcg agataacgat cacaaaaacg
    11341 acaatatgaa aattgttcga ggagtgaaag gcaaaaaaac ggcctcccga tagggaagcc
    11401 gtagcaaagt gcgcgtgttt ttatgccgga tgcggtgtaa acatacgtgg cagtgctatg
    11461 taggcatgat aagacgcttc agcgtcgcat caggcatagg ttgccggatg cagcgtaaac
    11521 gccttatccg tcctacgggg tggtgttgtt cgtataaggc gtatcaggcg atagtaattt
    11581 tgctatcgag ataaacgtcc tgcacggcgt taatcagttt cacgccgtca gccatcgatt
    11641 tcttgaacgc cttacgtcca agaatcagcc ccattccgcc agcgcgtttg ttgataaccg
    11701 cagtacgcac tgcatcactg aggtcagttt caccgcctgc agcaccgccg gagtttatca
    11761 accctgcccg gcccatatag cagttagcta actgataacg caccagatca atcgggtttt
    11821 cgctggttaa cttgctgtac acgcgatcgt cggtataacc gtaattaatc gctttataac
    11881 cgccgttatt ttccgccatt ttctgtttga cgatgtccgc gccaatggtc gccgccagat
    11941 ggttcgcctg accagtcagg tcggcggaaa catggtaatc aacgccatct ttcttaaagg
    12001 cggagttacg caaataggcc cacagcactg tcaccatgcc cagctcgtgc gcacgttcaa
    12061 aagccgcaga aatttcttca atctggcgac gtgactcttc cgagccaaaa tagatagtcg
    12121 caccaaccgc aaccgcgccc atgttgaacg cctgctccac gctggcatac agcgtttgat
    12181 cgtaggtatt cgggtaactt agcgtctcgt tgtgattaag tttgacgagg aatggaatgc
    12241 gatgcgcata acgccgcgat accgacgcca gcacgccgta agttgacgcc acacagttac
    12301 agcccgcttc gatcgccagt tcaacaatgt ttttcgggtc aaagtagagc gggttagcag
    12361 caaatgaagc tccggcagag tgctcaacgc cctggtcaac cggcagaata gaaagatatc
    12421 ctgtgccagc cagacgcccg gtgttgtaca acgtctgcat attacgtaac accgcaggcg
    12481 ggcgattatt gtcaatcatc acgcggtcta cgtagtcatg tccggggaga taaagctggt
    12541 cagaaggaat agtcatacaa cggtgctgta aaaggttgtc ggcgtctttg ccaagcaact
    12601 gcgcaatatc tgtcattact atgctcccgt aaattccgat tggatatcgg ctatggattt
    12661 tcctggcccg ccttttgcgg gcaatcataa tcctggtcgt tacgggcgag tttttccatc
    12721 ttttggatgt tttttcagcg ttttctgttg gctcgattca tcagaaaaaa tgttagcgcg
    12781 gtcaagtttt caccgcaaag gtatttaaaa ggcattatta agtggtattg tcatcgcgta
    12841 ccttacatta cctgtcatga aggaattaaa agatgaaaac aacagcaaag ctgtcgttca
    12901 tgatgtttgt tgaatggttt atctggggcg cgtggtttgt gccattgtgg ttgtggttaa
    12961 gtaaaagcgg ttttagtgcc ggagaaattg gctggtcgta tgcctgtacc gccattgcgg
    13021 cgatcctgtc gccaattctg gttggctcca tcactgaccg ctttttctcg gcgcagaaag
    13081 tgctggcggt attgatgttc gcaggcgcgc tgctgatgta tttcgctgcg caacagacca
    13141 cttttgccgg gttcttcccg ttactgctgg cctactcgct aacctatatg ccgaccattg
    13201 cgctgactaa cagcatcgct tttgccaacg tgccggatgt tgagcgtgat ttcccgcgca
    13261 ttcgtgtgat gggcactatc ggctggattg cctccggtct ggcatgtggt ttcttgccgc
    13321 aaatactggg gtatgccgat atctcaccga ctaacatccc gctgctgatt accgccggaa
    13381 gttctgctct gctcggtgtg tttgcgtttt tcctgcccga cacgccacca aaaagcaccg
    13441 gcaaaatgga tattaaagtc atgctcggcc tggatgcgct gatcctgctg cgcgataaaa
    13501 acttcctcgt ctttttcttc tgttcattcc tgtttgcgat gccactggcg ttctattaca
    13561 tctttgccaa cggttatctg accgaagttg gcatgaaaaa cgccaccggc tggatgacgc
    13621 tcggccagtt ctctgaaatc ttctttatgc tggcattgcc gtttttcact aaacgctttg
    13681 gtatcaaaaa ggtgttattg cttggtctgg tcaccgctgc gatccgctat ggcttcttta
    13741 tttacggtag tgcggatgaa tatttcacct acgcgttact gttcctcggt attttgcttc
    13801 acggcgtaag ttacgatttt tactacgtta ccgcttacat ctatgtcgat aaaaaagccc
    13861 ccgtgcatat gcgtaccgct gcgcaggggc tgatcacgct ctgctgccag ggcttcggca
    13921 gtttgctcgg ctatcgtctt ggcggtgtga tgatggaaaa gatgttcgct tatcaggaac
    13981 cggtaaacgg actgactttc aactggtccg ggatgtggac tttcggcgcg gtgatgattg
    14041 ccattatcgc cgtgctgttc atgatttttt tccgcgaatc cgacaacgaa attacggcta
    14101 tcaaggtcga tgatcgcgat attgcgttga cacaagggga agttaaatga aaacagaacg
    14161 tattctcggt gctctttatg ggcaggcgtt aggggatgcg atggggatgc cctccgagct
    14221 ttggccacgc agccgcgtta aagcacactt tggctggatt gaccgttttc ttcctggacc
    14281 aaaggagaat aacgcggcct gttattttaa ccgcgccgaa ttcaccgacg atacctcgat
    14341 ggcgctgtgt ctggcggatg cgttactgga acgtgaaggc aagatcgatc cgaatcttat
    14401 tgggcgtaat attctcgact gggcgctgcg tttcgacgcc tttaacaaaa acgtactagg
    14461 tccgacctcg aagattgctc tcaacgccat tcgcgacggt aaacccgttg ctgaactgga
    14521 aaacaatggc gtgaccaacg gcgcggcaat gcgcgtctcg ccattaggtt gtttgcttcc
    14581 ggcgcgtgat gttgattcct ttattgatga tgtggcgctg gcgtccagcc cgacccataa
    14641 atccgatctg gcggttgcgg gcgcggtagt catcgcatgg gcgatttctc gtgccattga
    14701 cggagaaagc tggtcagcga ttgtagattc actgccttca attgcgcgac atgcccagca
    14761 aaaacgcatc accaccttca gcgcctcact ggcagcacgt ctggagattg cgctgaaaat
    14821 tgtgcgcaat gccgacggca ctgaatccgc cagcgaacag ctgtatcagg tcgttggcgc
    14881 aggtaccagc actatcgagt ccgttccgtg cgccattgcg ctggttgaac tggcacaaac
    14941 cgacccgaac cgttgcgccg tcctctgcgc taaccttggc ggcgatacag acaccatcgg
    15001 tgctatggcg acggcaatct gcggcgcgtt gcatggcatt aacgctatcg atcctccgtt
    15061 aaaggcggag ctggatgcgg taaatcagct tgatttcaac cgctatgcca cagcgctggc
    15121 gaaatatcgt caacaacggg aggcggtatg agcggcgctc gattacacac gctgctgcct
    15181 gaattaacca cgcgtcagtc ggtgatggtc gtcggcgcgg cggtcattga cgtgatcgcc
    15241 gacgcttatg tcctcccctg gcgtgggtgc gatatcgaac tgaaacagca gagcgttaac
    15301 gttggcggct gcgcactgaa tattgccgtg gcgttaaagc gcctcggcat cgaagcgggt
    15361 aatgccttgc cgctcggtca gggggtatgg gcggagatta ttcgcaaccg gatggcgaaa
    15421 gaggggttaa tcagcctgat cgataacgcc gaaggcgata acggctggtg tctggcgctg
    15481 gttgagccgg atggcgaacg tacttttatg tcattcagcg gtgtggaaaa tcagtggaat
    15541 cgccagtggc tggcgcgatt aaccgttgcg cctggcagcc tgctctattt ttccggttat
    15601 caactggcct cgccctgcgg cgaattgtta gtggaatggc tggaagagct gcaagacgtg
    15661 acgccgttta tcgattttgg cccacgtatt ggcgatatcc cggacgcatt actggcgcgg
    15721 atcatggcct gtcgaccttt agtgtcactc aatcgtcaag aggctgagat tgccgccgaa
    15781 cgttttgctt tatccgcaga gataacaaca cttggcaagc aatggcagga gaaatttgcc
    15841 gcgccgttga tcgttcgtct cgataaagaa ggcgcatggt atttcagcaa cgacgcttct
    15901 ggctgcattc cggcatttcc aacgcaagtt gtcgacacca ttggggcggg cgacagtcat
    15961 gccgggctgg cctctggtct gccactggcg gatgccgtat tactgggcaa tgcagtggcg
    16021 tcgtgggttg tcgggcatcg gggcggtgat tgtgcgccaa cgcgcgagga actactcctc
    16081 gcacacaaaa acgtatagat cgctgcgaca gtggctaatg ctgtactcaa taggccgttg
    16141 ctgttggtca agcgccactt gcttgatcac cagcaccggt attttgctat ctaactgaat
    16201 atgtgactga aactcggcat ccggcatccg ggcgctaacg cgggaacgcg tacgttgtgg
    16261 gtaaatgtgc tggctgcgga aatagtcata aagtgaaatc ccgatggcat caacatcatg
    16321 aattaaatgc gccggaaccc acgattcctc aatcgatacc gcttcttcat cgacatagcg
    16381 aatacgctta agcaaaaaga catcacttcc tgcttcgacc gccagctgct gcgcgacttc
    16441 ttcgggacat ttcacgacac gcttgttaac ccatagcgta tcgggctttt tcccgcgcaa
    16501 taccacctgc tgagaaaaac ctcgcgcttc tttcaacgag tattcgaaga tgttgttgat
    16561 ctgcgtgccg taaccacgcg aacgcgtcac cacaccctct tcttccagcg cctgcatcgc
    16621 cttgcgcacc gtaatgcgcg aaacgccggt taactgactt aaatcacgct caccgggcaa
    16681 aatattgcca tgctccagca ccccgctgcg cacggcattt tttaccgttt cggcaaactt
    16741 aatataaagc ggcgtgttat ccgccgctaa aatacgttcg ttcagttggg caatcagctg
    16801 ggtatgcgct tgttccattt gtctttttcc tgccagggag tctggtggga gtatatcact
    16861 gcttcttatt taaggcgttt ctttaatccc atcaacgaac ccctgcaact cctccaccgt
    16921 gccattaaac acattaaaat ccaccggacc attgatgcca tctacctgtc cacggtcgga
    16981 atgctgccag aagcgccagg ccatgccgtc attgtccgga cgacgttgat agtagtgagc
    17041 cacccaccac ggatattcat tgaaatagcc cgccagattc gtgtgataaa aaacggctcc
    17101 tgagtaaata atcggctttt tccccgtact tttttcgacc atttttagcc actgacttac
    17161 cctcttgcgt aattcttttg ccgataattt tcctcgctct tctacgtcca gtaccgcagg
    17221 gaaatcgcct tgtgagaaat ctaccgtttg cagaaataat cgcacctgaa ccggtgctgc
    17281 taccgacggg gagaaataat gatatgcccc gcgcagcagg ccattttcac ggcttagttg
    17341 ccagttacgc gaaaaatagg ggtccaccag cttttcgcct tccgtcgcct taataaaggc
    17401 aaattgtaag cgaataccgt tatcgcgcat ttttgccaca cgctgccagt cgatccgctc
    17461 ctgccagcgc gaaacatcta ttccgtgaat ggtgtaactg gcaggaatac gaatagcgaa
    17521 agatttaacc gggcgataac cgtagaagtg gatgtagtct gtaatctgaa ctgctgtcga
    17581 atagaaaaaa ttcaccgtct gacgcggata aattgcaacg atggaaatta gcccaagagc
    17641 gcataataga gcggtgagtt tttttcgact ggtaattctt agctgcattg gtttcatccc
    17701 tgaatgtcag tgccaaaggc tgacaataac caaagcagct atagtacggt gctcaccacc
    17761 aggcgtggaa gtggtgaacc ggaccaatac cgtgaccaac ttccagcgtg tcggcctggg
    17821 ctaacgccga tgaaagccag ctttttgcct cctgtacggt gtcagcccag tttgtatggc
    17881 gcgggcgtag tgcagccaac gccgcagaga gtgtacaacc agtaccgtgg gtgtttttgg
    17941 tcataatgcg cggtgcggta aaccgttgtt caccctcgcg ggtaaacagc cagtccgggc
    18001 tttgctcatc atccagatga ccacctttca ttagcactgc gccacagccc atcgccaaca
    18061 gcgatcgccc ttgttccagc atttcctgtt cggtgcgcgc gtgtggcgcg tcgagcaagg
    18121 cggcagcttc gggcaagttt ggcgttatta atgaaacctg tggcaataat cgactgcgca
    18181 gcgtagcaac cgccgaaggt gaaagcagcg ggtcgccgct ttttgccagc ataacggtgt
    18241 cgagtaccac gttttggatc tgataacgtt gcaaccgttc tgccaccgct tcaacaatat
    18301 cggtttccgc caacataccg attttagtgg tgtcgattcg cacatcgctg aacaccgaat
    18361 cgagctgggc ggcgacaaaa tcaggctcaa tgcgatacac cgactgtacg ccacgggtat
    18421 tttgcgccac cagtgcagta ataactgagc aaccataagc gccaagtgcc gagaaggttt
    18481 taagatcggc ctgaatcccc gcaccaccac tgggatcagt accggcaatc gtcagagcgt
    18541 taattcgttt catgcctgca cctcctgcgt caattgccag agcgcatcaa ggaaatgtgg
    18601 aacaaaactg cctggcccct cgcttctggc gactgcgcgc tctccggctt gtttcatcca
    18661 gtgacaggca gatgcgacat tttccagcat atcgcctggt aacgcacaac aggcagcaac
    18721 aaccgccgat aatgcacagc cagttcctac cactttagtc attagcggat cgccaccgtg
    18781 aatgccaacg atacgatgcc catcggtaac ataatccacc tcgcctgtga ccacgacgat
    18841 tgcgccagtt tcccgtgcca gtgtttgtgc agcgggtatt gcgttagctg cggcgtcagt
    18901 ggtatccact ccccgtccac cattagcaac gccagctaat gccatgattt ccgaagcatt
    18961 accacgtatg gcggttggct tatgagacag aagttccaga caaaaacggc ggcgataatc
    19021 gagtgcaccc accgctacag gatcaagcgt ccagggggtt tgagagcttt ttgcttgctc
    19081 aacggcggca cgcatcgcct gtgcgcgtgg ctgcgtcagc gtgccaacgt taatcagcaa
    19141 cgcactagca atagccgcaa actgactggc ctcttcggtt tcgataacca tcgctggcga
    19201 tgcaccgagc gccagcaagg tattggcagt aaaggtttgc accacatcgt tggtcatgca
    19261 gtgcacaaga ggggaatgtt ggtgaaaaag gtgtaacgtg tgcgcagatt gcgcggaact
    19321 cagcaggtcg acttgcatag tttgctcctg ccataacgtg aagaagcaat gacctggtgg
    19381 tccgtgactt ccctacgctg gcattatcca gatcaggtaa tacgggtatt tctcagcctt
    19441 cacgcagaag ggcaccccga gtcgtttggt tgcgatgata aatcgcagag gaggatggta
    19501 atgtccagcg cacgcgttgt aaacgaggaa aaacggcagt tttacaatcg cgttaataaa
    19561 ttatttgata tatgaatcca gcaccttcag aacgacatcc agatcttctt cacgttttag
    19621 ctcatccccc tggtgaacga tgtgttccgt cagatgacct ttaatcactt cccgcatcag
    19681 accgtttacc gcgccacgga tagcagcaat ctgttgtaaa actgcagcgc attcgtgcgg
    19741 ctcgtcgagc attttcttga gcgccacgac ctggccctga atcttactgg cacgcgcttt
    19801 cagtttctgt ttatcacgga ttgtatgaga catggcaaca cctggttaac aagaatatga
    19861 aaaatcatag cactattaat ctactggggg gtagtatcag gtactggggg gggagtagaa
    19921 tcagattgcc gaattaatac taagaattat tatcatgacc gaatttacaa ctcttcttca
    19981 gcaaggaaac gcctggttct tcatccccag cgccatctta cttggtgcgc ttcatggtct
    20041 ggaaccaggg cactcaaaaa cgatgatggc ggcgtttatc atcgccatca aaggcaccat
    20101 taaacaggcg gtgatgctcg gactggcagc aaccatttcg cagaccgcgg tggtctggtt
    20161 gattgccttt ggcgggatgg tgatcagt
//
LOCUS       DADMHM010000059        19927 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.060, whole genome shotgun sequence.
ACCESSION   DADMHM010000059 DADMHM010000000
VERSION     DADMHM010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19927)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19927)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19927
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.060"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(95..907)
                     /locus_tag="JN125_001876"
     CDS             complement(95..907)
                     /locus_tag="JN125_001876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HAY8871675.1"
                     /translation="MATTQQSGFAPAASPLASTIVQTPDDAIVAGFTSIPSQGDNMPA
                     YHARPKQSDGPLPVVIVVQEIFGVHEHIRDICRRLALEEYLAIAPELYFREGDPNDFA
                     DIPTLLSGLVAKVPDSQVLADLDHVASWASRNGGDVHRLMITGFSWGGRITWLYAAHN
                     PQLKAAVAWYGKLTGDKSLNSPKQPVDIATDLNAPILGLYGGQDNSIPQESVETMRQA
                     LRAANAKAEIIVYPDAGHAFNADYRPSYHAESAKDGWQRMLEWFKQYGGKRS"
     gene            1169..1930
                     /gene="udp"
                     /locus_tag="JN125_001877"
     CDS             1169..1930
                     /gene="udp"
                     /locus_tag="JN125_001877"
                     /EC_number="2.4.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine phosphorylase"
                     /protein_id="HAY8871676.1"
                     /translation="MSKSDVFHLGLTKNDLQGATLAIVPGDPDRVEKIAALMDKPVKL
                     ASHREFTTWRAELDGKPVIVCSTGIGGPSTSIAVEELAQLGIRTFLRIGTTGAIQPHI
                     NVGDVLVTTASVRLDGASLHFAPLEFPAVADFECTTALVEAAKSIGATTHVGVTASSD
                     TFYPGQERYDTYSGRVVRHFKGSMEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAG
                     VIVNRTQQEIPNAETMKQTESQAVKIVVEAARRLL"
     gene            2071..3498
                     /gene="rmuC"
                     /locus_tag="JN125_001878"
     CDS             2071..3498
                     /gene="rmuC"
                     /locus_tag="JN125_001878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA recombination protein RmuC"
                     /protein_id="HAY8871677.1"
                     /translation="MDFSIMVYAVIALVGVAIGWLFASYQHAQQKAEQLAEREEMVAE
                     LSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIR
                     QMINSEQRLSEQFENLANRIFEHSNCRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSF
                     GKEAQERHTLTHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEASG
                     LREGYEYETQVSIENDARSRMQPDVIVRLPQGKDVVIDAKMTLVAYERYFNAEDDYTR
                     ESALQEHIASVRNHIRLLGRKDYQQLPGLRTLDYVLMFIPVEPAFLLALDRQPELITE
                     ALKNNIMLVSPTTLQVALRTIANLWRYEHQSRNAQQIADRASKLYDKMRLFIDDMSAI
                     GQSLDKAQDNYRQAMKKLSSGRGNVLAQAEAFRGLGVEIKREINPDLAEQAVSQDEEY
                     RLRSVPEQPNDEAYQRDDEYNQQSR"
     gene            3593..4348
                     /gene="ubiE"
                     /locus_tag="JN125_001879"
     CDS             3593..4348
                     /gene="ubiE"
                     /locus_tag="JN125_001879"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HAY8871678.1"
                     /translation="MVDKSQETTHFGFQTVAKEQKADMVAHVFHSVASKYDVMNDLMS
                     FGIHRLWKRFTIDCSGVRRGQTVLDLAGGTGDLTAKFSRLVGETGKVVLADINESMLK
                     MGREKLRNIGVIGNVEYVQANAEALPFPDNTFDCITISFGLRNVTDKDKALRSMYRVL
                     KPGGRLLVLEFSKPIIEPLSKAYDAYSFHVLPRIGSLVANDADSYRYLAESIRMHPDQ
                     DTLKAMMQDAGFESVDYYNLTAGVVALHRGYKF"
     gene            4362..4967
                     /gene="ubiJ"
                     /locus_tag="JN125_001880"
     CDS             4362..4967
                     /gene="ubiJ"
                     /locus_tag="JN125_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis protein UbiJ"
                     /protein_id="HAY8871679.1"
                     /translation="MPFKPLVTAGIESLLNTFLYRSPALKTARSRLLGKVLRVEVKGF
                     STSLILVFSERQVDVLGEWAGDADCTVIAYASVLPKLRDRQQLTALIRSGELEVQGDI
                     QVVQNFVALADLAEFDPAELLAPYTGDIAAEGISKAMRGGAKFLHHGIKRQQRYVAEA
                     ITEEWRMAPGPLEVAWFAEETAAVERAVDALTKRLEKLEAK"
     gene            4964..6604
                     /gene="ubiB"
                     /locus_tag="JN125_001881"
     CDS             4964..6604
                     /gene="ubiB"
                     /locus_tag="JN125_001881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis regulatory protein
                     kinase UbiB"
                     /protein_id="HAY8871680.1"
                     /translation="MTPGEVRRLYFIIRTFLSYGLDELIPKMRITLPLRLWRYSLFWM
                     PNRHKDKLLGERLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDG
                     KLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDIL
                     PVIKADLKLIYRLARWVPRLLPDGRRLRPTEVVREYEKTLIDELNLLRESANAIQLRR
                     NFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFF
                     TQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFN
                     RDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIFEKPLAEISFGHVLLNLFNTAR
                     RFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLESWIKDQVGIPALVRAF
                     KEKAPFWVEKMPELPELVYDSLRQGKYLQHSVDKIARELQSNHVRQGQSRYFLGIGAT
                     LVLSGTFLLVSRPEWGLMPGWLMAGGLIAWFVGWRKTR"
     gene            6684..6953
                     /gene="tatA"
                     /locus_tag="JN125_001882"
     CDS             6684..6953
                     /gene="tatA"
                     /locus_tag="JN125_001882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA"
                     /protein_id="HAY8871681.1"
                     /translation="MGGISIWQLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMS
                     DDEPKQDKTSQDADFTAKTIADKQADTNQEQAKTEDAKRHDKEQV"
     gene            6957..7472
                     /gene="tatB"
                     /locus_tag="JN125_001883"
     CDS             6957..7472
                     /gene="tatB"
                     /locus_tag="JN125_001883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HAY8871682.1"
                     /translation="MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLAT
                     TVQNELIQELKLQEFQDSLKKVEKASLTNLTPELKASMDELRQAAESMKRSYVANDPE
                     KASDEAHTIHNPVVKDNEAAHEGVTPAAAQTQASSPEQKPETTPEPVVKPAADAEPKT
                     AAPSPSSSDKP"
     gene            7475..8251
                     /gene="tatC"
                     /locus_tag="JN125_001884"
     CDS             7475..8251
                     /gene="tatC"
                     /locus_tag="JN125_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatC"
                     /protein_id="HAY8871683.1"
                     /translation="MSVEDTQPLITHLIELRKRLLNCIIAVIVIFLCLVYFANDIYHL
                     VSAPLIKQLPQGSTMIATDVASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKH
                     ERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLANTAPEGVQVSTDIASYLSFVMA
                     LFMAFGVSFEVPVAIVLLCWMGITSPEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLL
                     AIPMYCLFEIGVFFSRFYVGKGRNREEENDAEAESEKTEE"
     gene            8293..9075
                     /gene="tatD"
                     /locus_tag="JN125_001885"
     CDS             8293..9075
                     /gene="tatD"
                     /locus_tag="JN125_001885"
                     /EC_number="3.1.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709645.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' ssDNA/RNA exonuclease TatD"
                     /protein_id="HAY8871684.1"
                     /translation="MFDIGVNLTSSQFAKDRDDVVARAFDAGVNGLLITGTNLRESQQ
                     AQKLARQYSSCWSTAGVHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFNRNFST
                     PEEQERAFVAQLRIAAELNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREE
                     MQACVARGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDFTPKPSS
                     RRNEPAHLHHILQRIAHWRGEDAAWLAATTDANVKTLFGIAF"
     gene            complement(9072..9560)
                     /gene="rfaH"
                     /locus_tag="JN125_001886"
     CDS             complement(9072..9560)
                     /gene="rfaH"
                     /locus_tag="JN125_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription/translation regulatory transformer
                     protein RfaH"
                     /protein_id="HAY8871685.1"
                     /translation="MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRT
                     AVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK
                     DIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR
                     KL"
     gene            9727..11220
                     /gene="ubiD"
                     /locus_tag="JN125_001887"
     CDS             9727..11220
                     /gene="ubiD"
                     /locus_tag="JN125_001887"
                     /EC_number="4.1.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-polyprenylbenzoate decarboxylase"
                     /protein_id="HAY8871686.1"
                     /translation="MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLR
                     AGGPALLFENPKGYSMPVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFLKEPEPPK
                     GFRDLFDKLPQFKQVLNMPTKRLRGVPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLIT
                     WGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVS
                     VALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGY
                     IEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGV
                     ALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQF
                     MYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSK
                     MGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIFNNGKSA"
     gene            11266..11967
                     /gene="fre"
                     /locus_tag="JN125_001888"
     CDS             11266..11967
                     /gene="fre"
                     /locus_tag="JN125_001888"
                     /EC_number="1.5.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-flavin reductase"
                     /protein_id="HAY8871687.1"
                     /translation="MTTLSCKVTSVEAITDTVYRVRIVPDAAFSFRAGQYLMVVMDER
                     DKRPFSMASTPDEKGFIELHIGASEINLYAKAVMDRILKDYQIVVDIPYGEAWLRDDE
                     ERPMILIAGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLSELEALSLKHP
                     GLRVVPVVEQPEAGWRGRTGTVLTAVLQDHGTLAEHDIYIAGRFEMAKIARDLFCSER
                     NAREDRLFGDAFAFI"
     gene            complement(12159..13322)
                     /gene="fadA"
                     /locus_tag="JN125_001889"
     CDS             complement(12159..13322)
                     /gene="fadA"
                     /locus_tag="JN125_001889"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase FadA"
                     /protein_id="HAY8871688.1"
                     /translation="MEQVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPA
                     LEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAA
                     RMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGMMGLTAEMLARMHGI
                     SREMQDAFAARSHARAWAATQSGAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVEA
                     LATLRPAFDPVNGTVTAGTSSALSDGAAAMLVMSESRAHELGLKPRARVRSMAVVGCD
                     PSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINL
                     NGGAIALGHPLGCSGARISTTLLNLMERKDVQFGLATMCIGLGQGIATVFERV"
     gene            complement(13332..15521)
                     /gene="fadB"
                     /locus_tag="JN125_001890"
     CDS             complement(13332..15521)
                     /gene="fadB"
                     /locus_tag="JN125_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001490315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid oxidation complex subunit alpha FadB"
                     /protein_id="HAY8871689.1"
                     /translation="MLYKGDTLYLDWLEDGIAELVFDAPGSVNKLDTATVASLGEAIG
                     VLEQQSDLKGLLLRSNKAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLP
                     VPTIAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGA
                     DSALEIIAAGKDVGADQALKIGLVDGVVKAEKLVEGAKAVLRQAINGDLDWKAKRQPK
                     LEPLKLSKIEATMSFTIAKGMVAQTAGKHYPAPITAVKTIEAAARFGREEALNLENKS
                     FVPLAHTNEARALVGIFLNDQYVKGKAKKLTKDVETPKQAAVLGAGIMGGGIAYQSAW
                     KGVPVVMKDINDKSLTLGMTEAAKLLNKQLERGKIDGLKLAGVISTIHPTLDYAGFDR
                     VDVVVEAVVENPKVKKAVLAETEQKVRPDTVLASNTSTIPISELANALERPENFCGMH
                     FFNPVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNDCPGFFVNRVLFPYFA
                     GFSQLLRDGADFRKIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQK
                     DYRDAIDALFDANRFGQKNGLGFWRYKEDSKGKPKKEEDAAVEDLLAEVSQPKRDFSE
                     EEIIARMMIPMVNEVVRCLEEGIIATPAEADMALVYGLGFPPFHGGAFRWLDTLGSAK
                     YLDMAQQYQHLGPLYEVPEGLRNKARHNEPYYPPVEPARPVGDLKTA"
     gene            15711..17042
                     /gene="pepQ"
                     /locus_tag="JN125_001891"
     CDS             15711..17042
                     /gene="pepQ"
                     /locus_tag="JN125_001891"
                     /EC_number="3.4.13.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020801804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Xaa-Pro dipeptidase"
                     /protein_id="HAY8871690.1"
                     /translation="MESLASLYKNHIATLQERTRDALARFKLDALLIHSGELFNVFLD
                     DHPYPFKVNPQFKAWVPVTQVPNCWLLVDGVNKPKLWFYLPVDYWHNVEPLPTSFWTE
                     DVEVIALPKADGIGSLLPAARGNIGYIGPVPERALQLGIEASNINPKGVIDYLHYYRS
                     FKTEYELACMREAQKMAVNGHRAAEEAFRSGMSEFDINIAYLTATGHRDTDVPYSNIV
                     ALNEHASVLHYTKLDHQAPEEMRSFLLDAGAEYNGYAADLTRTWSAKSDNDYAQLVKD
                     VNDEQLALIATMKAGVSYVDYHLQFHQRIAKLLRKHQIITDMSEEAMVENDLTGPFMP
                     HGIGHPLGLQVHDVAGFMQDDSGTHLAAPAKYPYLRCTRILQPGMVLTIEPGIYFIES
                     LLAPWREGQFSKHFNWQKIEALKPFSGIRIEDNVVIHENNVENMTRDLKLA"
     gene            17042..17656
                     /locus_tag="JN125_001892"
     CDS             17042..17656
                     /locus_tag="JN125_001892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709652.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMPACT family protein"
                     /protein_id="HAY8871691.1"
                     /translation="MESWLIPAAPVTVVEEIKKSRFITMLAHTDGVEAAKAFVESVRA
                     EHPDARHHCVAWVAGAPDDSQQLGFSDDGEPAGTAGKPMLAQLMGSGVGEITAVVVRY
                     YGGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYSQLTGIEALLGQCDG
                     KIINSDYQAFVLLRVALPAAKVAEFSAKLADFSRGSLQLLAIEE"
     gene            17695..19146
                     /gene="trkH"
                     /locus_tag="JN125_001893"
     CDS             17695..19146
                     /gene="trkH"
                     /locus_tag="JN125_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004146450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trk system potassium transporter TrkH"
                     /protein_id="HAY8871692.1"
                     /translation="MHFRAITRIVGLLVILFSGTMIIPGLVALIYRDGAGRAFTQTFF
                     VALAIGSMLWWPNRKEKGELKSREGFLIVVLFWTVLGSVGALPFIFSESPNLTITDAF
                     FESFSGLTTTGATTLVGLDSLPHAILFYRQMLQWFGGMGIIVLAVAILPILGVGGMQL
                     YRAEMPGPLKDNKMRPRIAETAKTLWLIYVLLTVACALALWFAGMDAFDAIGHSFATI
                     AIGGFSTHDASIGYFDSPTINTIIAIFLLISGCNYGLHFSLLSGRSLKVYWRDPEFRM
                     FIGVQFTLVVICTLVLWFHNVYSSALMTINQAFFQVVSMATTAGFTTDSIARWPLFLP
                     VLLLCSAFIGGCAGSTGGGLKVIRILLLFKQGNRELKRLVHPNAVYSIKLGNRALPER
                     ILEAVWGFFSAYALVFIVSMLAIIATGVDDFSAFASVVATLNNLGPGLGVVADNFTSM
                     NPVAKWILIANMLFGRLEVFTLLVLFTPTFWRE"
     gene            19158..19703
                     /gene="hemG"
                     /locus_tag="JN125_001894"
     CDS             19158..19703
                     /gene="hemG"
                     /locus_tag="JN125_001894"
                     /EC_number="1.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone-dependent protoporphyrinogen IX
                     dehydrogenase"
                     /protein_id="HAY8871693.1"
                     /translation="MKTLILFSTRDGQTREIASYLASELKELGIQTDVANVHRIEEPQ
                     WKNYDRVVIGASIRYGHYHSAFQEFVKKHATRLNSMPSAFYSVNLVARKPEKRTPQTN
                     SYARKFLMSSQWRPDRCAVIAGALRYPRYRWYDRFMIKLIMKMSGGETDTRKEVVYTD
                     WEQVANFAREIAQLTNKPTLK"
BASE COUNT         4625 a         5056 c         5456 g         4790 t
ORIGIN      
        1 tccaatcaat tcatactgat tattttttgg gggacagaga tggcagcaaa acgcactcgt
       61 tcactcacca tctcaaatat agactaagag gaaactaact ccgcttccca ccatactgct
      121 taaaccattc cagcatacgc tgccagccat ctttcgcaga ttcggcatga tagctcgggc
      181 gataatcagc gttgaatgca tgcccggcgt ccgggtacac gataatctct gctttcgcat
      241 tagcagcccg cagcgcctgg cgcatggttt caacgctctc ctgcggaatg ctgttatcct
      301 gaccaccata taagccgaga atcggcgcgt taagatcggt tgcgatatca acaggttgtt
      361 tcggtgaatt cagcgacttg tcgcccgtca gtttgccgta ccacgccact gcggctttta
      421 gctgtggatt atgcgcggca tacagccagg tgatacgtcc accccagctg aatccggtga
      481 tcattaaacg atgaacatcg ccgccgttgc gggaagccca actggcgaca tgatcgagat
      541 cggccagcac ctgcgagtca ggtacttttg ctaccagacc gctaagcaac gtggggatat
      601 cggcaaaatc attcggatcg ccttcgcgga agtaaagttc aggtgcgata gccagatact
      661 cctccagcgc cagacggcga caaatgtcgc ggatatgttc atgcacgcca aaaatttcct
      721 gcactacaat gaccactggc agtgggccat cgctttgctt tggtctggca tggtaagcag
      781 gcatgttatc cccttgtgaa gggatagagg tgaagcccgc cacaatcgcg tcgtccgggg
      841 tctgaacgat ggtcgaagcg agaggcgatg cagcaggtgc aaatccagat tgttgtgttg
      901 ttgccatggt attctccgta cccttataaa aatgttgcgc aatgttaact atagtcagca
      961 tgcaacaaat cacattgcct gaatcggctc atcttttatg cagtcctgca gaatgaagag
     1021 tgatttatgt gatttgcatc acttttggtg ggtaaattta tgcaacgcat ttgcgtcatg
     1081 gtgatgagta tcacgaaaaa atgttaaacc cttcggtaaa gtgtcttttt gcttcttctg
     1141 actaaaccga ttcacagagg agttgtatat gtccaagtct gatgtttttc atctcggcct
     1201 cactaaaaac gatttacaag gggctacgct tgccatcgtc cctggcgacc cggatcgtgt
     1261 ggaaaagatc gccgcgctga tggataagcc ggttaagctg gcatctcacc gcgaattcac
     1321 cacctggcgt gcagagctgg atggtaaacc tgttatcgtc tgctctaccg gtatcggcgg
     1381 cccgtctacc tctattgctg ttgaagagct ggcacagctg ggcattcgca ccttcctgcg
     1441 tatcggtaca acgggcgcta ttcagccgca tattaatgtg ggtgatgtcc tggttaccac
     1501 ggcgtctgtc cgtctggatg gcgcgagcct gcacttcgca ccgctggaat tcccggctgt
     1561 cgctgatttc gaatgtacga ctgcgctggt tgaagctgcg aaatccattg gcgcgacaac
     1621 tcacgttggc gtgacagctt cttctgatac cttctaccca ggccaggaac gttacgatac
     1681 ttactctggt cgcgtagttc gtcactttaa aggttctatg gaagagtggc aggcgatggg
     1741 cgtaatgaac tatgaaatgg aatctgcaac cctgctgacc atgtgtgcaa gtcagggcct
     1801 gcgtgccggt atggtagcgg gtgttatcgt taaccgcacc cagcaagaga tcccgaatgc
     1861 tgagacgatg aaacaaactg aaagccaagc ggtgaaaatc gtggtggaag cggcgcgtcg
     1921 tctgctgtaa ttctcttctc ctgtctgaag gccgacgcgt tcggcctttt gtatttttgc
     1981 gtagcgcctc gcaggaaatg cctttccaac tggacgtttg tacagcacaa ttctattttg
     2041 tgcgggtaag ttgttgcgtc aggaggcgtt gtggatttct caatcatggt ttacgcagtt
     2101 attgcgttgg tgggtgtggc aattggctgg ctgtttgcca gttatcaaca tgcgcagcaa
     2161 aaagccgagc aattagctga acgtgaagag atggtcgcgg agttaagcgc ggcaaaacaa
     2221 caaattaccc aaagcgagca ctggcgtgca gagtgcgagt tactcaataa cgaagtgcgc
     2281 agcctgcaaa gtattaacac ctctctggag gccgatctgc gtgaagtaac cacgcggatg
     2341 gaagccgcac agcaacatgc tgacgataaa attcgccaga tgattaacag cgagcagcgc
     2401 ctcagtgagc agtttgaaaa cctcgccaac cgtatttttg agcacagcaa ttgccgggtt
     2461 gatgagcaaa accgtcagag tctgaacagc ctgttgtcgc cgctacgtga acaactggac
     2521 ggtttccgcc gtcaggttca ggacagcttc ggtaaagaag cacaagaacg ccataccctg
     2581 acccacgaaa ttcgcaatct ccagcaactc aacgcgcaaa tggcccagga agcgatcaac
     2641 ctgacgcgcg cgctgaaagg cgacaataaa acccagggca actggggcga ggtagtattg
     2701 acgcgggtgc tggaggcttc cggtctgcgt gaagggtatg aatatgaaac ccaggtcagc
     2761 atcgaaaatg acgcccgctc gcggatgcag ccggatgtca tcgtgcggct gccgcaggga
     2821 aaagatgtgg tgatcgacgc caaaatgacg ctggtcgcct atgaacgcta ttttaacgcc
     2881 gaagacgact acacccgcga aagcgcgcta caggaacata tcgcgtcggt gcgtaaccat
     2941 atccgtttgc tgggacgcaa agattatcaa cagctgccgg ggctgcgaac tctggattac
     3001 gtgctgatgt ttattcccgt tgaacccgct tttttactgg cgcttgaccg ccagccggag
     3061 ctgatcaccg aagcgttgaa aaacaatatc atgctggtta gcccgactac gctgcaggtg
     3121 gcgttgcgta ctattgccaa cctgtggcgt tatgagcatc aaagccgcaa cgcccagcaa
     3181 atcgccgatc gtgccagcaa gctgtacgac aagatgcgtt tgttcatcga tgacatgtcc
     3241 gcgattggtc aaagtctcga caaagcgcag gataactacc gccaggcaat gaaaaaactc
     3301 tcttcaggtc gcggaaatgt gctggcgcag gcagaagcgt ttcgcggttt aggagtagaa
     3361 attaaacgcg agattaatcc ggatttggct gaacaggcgg tgagccagga tgaagagtat
     3421 cgacttcggt cggttccgga gcagccgaat gatgaagctt atcaacgcga tgatgaatat
     3481 aatcagcagt cgcgctagcc cattaggggt agttaagccg ggtagaaatc tagggtatcg
     3541 acgcccaatc tgttacactt ctggaacaat tttttgatga gcaggcattg agatggtgga
     3601 taagtcacaa gaaacgacgc actttggttt tcagaccgtc gcgaaggaac aaaaagcgga
     3661 tatggtcgcc cacgttttcc attccgtggc atcaaaatac gatgtcatga atgatttgat
     3721 gtcatttggt attcatcgtt tgtggaagcg attcacgatt gattgcagcg gcgtacgccg
     3781 tgggcagacc gtgctggatc tggctggtgg caccggcgac ctgacagcga aattctcccg
     3841 cctggtcgga gaaactggca aagtggtcct tgctgatatc aatgaatcca tgctcaaaat
     3901 gggacgcgag aagctgcgta atatcggtgt gattggcaac gttgagtatg ttcaggcgaa
     3961 cgctgaggcg ctgccgttcc cggataacac ctttgattgc atcaccattt cgtttggtct
     4021 gcgtaacgtc accgacaaag ataaagcact gcgttcaatg tatcgcgtgc tgaaacccgg
     4081 cggccgcctg ctggtgcttg agttctcgaa gccaattatc gagccgctga gcaaagccta
     4141 tgatgcatac tccttccatg tgctgccgcg tattggctca ctggtcgcga acgacgccga
     4201 cagctaccgt tatctggcag aatccatccg tatgcatccc gatcaggata ccctgaaagc
     4261 catgatgcag gatgccggat tcgaaagtgt cgactactac aatctgacgg caggggttgt
     4321 ggcgctgcat cgtggttata agttctgaca ggagaccgga aatgcctttt aaacctttag
     4381 tgacggcagg aattgaaagt ctgctcaaca ccttcctgta tcgctcaccc gcgctgaaaa
     4441 cagcccgctc gcgtctgctg ggtaaagtat tgcgcgtgga ggtaaaaggc ttttcgacgt
     4501 cattgattct ggtgttcagc gaacgccagg ttgatgtact gggcgaatgg gcaggcgatg
     4561 ctgactgcac cgttatcgcc tacgccagtg tgttgccgaa acttcgcgat cgccagcagc
     4621 ttaccgcact gattcgcagt ggtgagctgg aagtgcaggg cgatattcag gtggtgcaaa
     4681 acttcgttgc gctggcagat ctggcagagt tcgaccctgc ggaactgctg gccccttata
     4741 ccggtgatat cgccgctgaa ggaatcagca aagccatgcg cggaggcgca aagttcctgc
     4801 atcacggcat taagcgccag caacgttatg tggcggaagc cattactgaa gagtggcgta
     4861 tggcacccgg tccgcttgaa gtggcctggt ttgcggaaga gacggctgcc gtcgagcgtg
     4921 ctgttgatgc cctgaccaaa cggctggaaa aactggaggc taaatgacgc caggtgaagt
     4981 acggcgccta tatttcatca ttcgcacttt tttaagctac ggacttgatg aactgatccc
     5041 caaaatgcgt atcaccctgc cgctacggct atggcgatac tcattattct ggatgccaaa
     5101 tcggcataaa gacaaacttt taggtgagcg actacgactg gccctgcaag aactggggcc
     5161 ggtttggatc aagttcgggc aaatgttatc aacccgccgc gatctttttc caccgcatat
     5221 tgccgatcag ctggcgttat tgcaggacaa agttgctccg tttgatggca agctggcgaa
     5281 gcagcagatt gaagctgcaa tgggcggctt gccggtagaa gcgtggtttg acgattttga
     5341 aatcaagccg ctggcttctg cttctatcgc ccaggttcat accgcgcgat tgaaatcgaa
     5401 tggtaaagag gtggtgatta aagtcatccg cccggatatt ttgccggtca ttaaagcgga
     5461 tctgaaactt atctaccgtc tggctcgctg ggtgccgcgt ttgctgccgg atggtcgccg
     5521 tctgcgccca accgaagtgg tgcgcgagta cgaaaagacc ttgattgatg aactgaattt
     5581 gctgcgggaa tctgccaacg ccattcagct tcggcgcaat tttgaagaca gcccgatgct
     5641 ctacatcccg gaagtttacc ctgactattg tagtgaaggg atgatggtga tggagcgcat
     5701 ttacggcatt ccggtgtctg atgttgcggc gctggagaaa aacggcacta acatgaaatt
     5761 gctggcggaa cgcggcgtgc aggtgttctt cactcaggtc tttcgcgaca gctttttcca
     5821 tgccgatatg caccctggca acatcttcgt aagctatgaa cacccggaaa acccgaaata
     5881 tatcggcatt gattgcggga ttgttggctc gctaaacaaa gaagataaac gctatctggc
     5941 agaaaacttt atcgccttct ttaatcgcga ctatcgcaaa gtggcagagc tacacgtcga
     6001 ttcaggctgg gtgccaccag ataccaacgt tgaagagttc gaatttgcca ttcgtacggt
     6061 ctgtgaacct atctttgaga aaccgctggc cgaaatttcg tttggacatg tactgttaaa
     6121 tctgtttaat acggcgcgtc gcttcaatat ggaagtgcag ccgcaactgg tgttactcca
     6181 gaaaaccctg ctctatgtcg aaggggtagg acgccagctt tatccgcagc tcgatttatg
     6241 gaaaacagcg aagcctttcc tggagtcgtg gattaaagat caggtcggta ttcctgcgct
     6301 ggtgagagca tttaaagaaa aagcgccgtt ctgggtcgaa aaaatgccag aactgcctga
     6361 attggtttac gacagtttgc gccagggcaa gtatttacag cacagtgttg ataagattgc
     6421 ccgcgagctt cagtcaaatc atgtacgtca gggacaatcg cgttattttc tcggaattgg
     6481 cgctacgtta gtattaagtg gcacattctt gttggtcagc cgacctgagt gggggctgat
     6541 gcccggctgg ttaatggcag gtggtctgat cgcctggttt gtcggttggc gcaaaacacg
     6601 ctgatttttt catcgctcaa ggcggggccg tgtaacgtat aatgcggctt tgtttaatca
     6661 tcatctacca cagaggaaca tgtatgggtg gtatcagtat ttggcagtta ttgattattg
     6721 ccgtcatcgt tgtactgctt tttggcacca aaaagctcgg ctccatcggt tccgatcttg
     6781 gtgcgtcgat caaaggcttt aaaaaagcaa tgagcgatga tgaaccaaag caggataaaa
     6841 ccagtcagga tgctgatttt actgcgaaaa ctatcgccga taagcaggcg gatacgaatc
     6901 aggaacaggc taaaacagaa gacgcgaagc gccacgataa agagcaggtg taatccgtgt
     6961 ttgatatcgg ttttagcgaa ctgctattgg tgttcatcat cggcctcgtc gttctggggc
     7021 cgcaacgact gcctgtggcg gtaaaaacgg tagcgggctg gattcgcgcg ttgcgttcac
     7081 tggcgacaac ggtgcagaac gaactgatcc aggagttaaa actccaggag tttcaggaca
     7141 gtctgaaaaa ggttgaaaag gcgagcctca ctaacctgac gcccgaactg aaagcgtcga
     7201 tggatgaact acgccaggcc gcggagtcga tgaagcgttc ctacgttgca aacgatccag
     7261 aaaaggcgag cgatgaagcg cacaccatcc ataacccggt ggtgaaagat aatgaagctg
     7321 cgcatgaggg cgtaacgcct gccgctgcac aaacgcaggc cagttcgccg gaacagaagc
     7381 cagaaaccac gccagagccg gtggtaaaac ctgctgcgga cgctgaaccg aaaaccgctg
     7441 caccttcccc ttcgtcgagt gataaaccgt aaacatgtct gtagaagata ctcaaccgct
     7501 tatcacgcat ctaattgagc tgcgtaagcg tctgctgaac tgcattatcg cggtgatcgt
     7561 gatattcctg tgtctggtct atttcgccaa tgacatctat cacctggtat ccgcgccatt
     7621 gatcaagcag ttgccgcaag gttcaacgat gatcgccacc gacgtggcct cgccgttctt
     7681 tacgccgatc aagctgacct ttatggtgtc gctgattctg tcagcgccgg tgattctcta
     7741 tcaggtgtgg gcatttatcg ccccagcgct gtataagcat gaacgtcgcc tggtggtgcc
     7801 gctgctggtt tccagctctc tgctgtttta tatcggcatg gcattcgcct actttgtggt
     7861 ctttccgctg gcatttggct tccttgccaa taccgcgccg gaaggggtgc aggtatccac
     7921 cgacatcgcc agctatttaa gcttcgttat ggcgctgttt atggcgtttg gtgtctcctt
     7981 tgaagtgccg gtggcaattg tgctgctgtg ctggatgggg attacctcgc cagaagactt
     8041 acgcaaaaaa cgcccgtatg tgctggttgg tgcattcgtt gtcgggatgt tgctgacgcc
     8101 gccggatgtc ttctcgcaaa cgctattggc gatcccgatg tactgtctgt ttgaaatcgg
     8161 tgtcttcttc tcacgctttt acgttggtaa agggcgaaat cgggaagagg aaaacgacgc
     8221 tgaagcagaa agcgaaaaaa ctgaagaata aattcaaccg cccgtcaggg cggttgtcat
     8281 atggagtaca ggatgtttga tatcggcgtt aatttgacca gttcgcaatt tgcgaaagac
     8341 cgtgatgatg ttgtagcgcg cgcttttgac gcgggagtta atgggctact catcaccggc
     8401 actaacctgc gtgaaagcca gcaggcgcaa aagctggcgc gtcagtattc gtcctgttgg
     8461 tcaacggcgg gcgtacatcc tcacgacagc agccagtggc aagctgcgac tgaagaagcg
     8521 attattgagc tggccgcgca gccagaagtg gtggcgattg gtgaatgtgg tctcgacttt
     8581 aaccgcaact tttcgacgcc ggaagagcag gaacgcgctt ttgttgctca gctacgcatt
     8641 gccgcagaat taaacatgcc ggtatttatg cactgtcgcg atgcccacga gcggtttatg
     8701 acattgctgg agccgtggct ggataaactg cctggtgcgg ttcttcattg ctttaccggc
     8761 acacgcgaag agatgcaggc gtgcgtggcg cgtggaattt atatcggcat taccggttgg
     8821 gtttgcgatg aacgacgcgg gctggagctg cgggaattgt tgccgttgat tccggcggag
     8881 aaattgctga tcgaaactga tgcgccgtat ctgctcccgc gcgatttcac gccaaagcca
     8941 tcatcccggc gcaacgagcc agcccatctg caccatattt tgcaacgtat tgcgcactgg
     9001 cgtggagaag atgccgcatg gctggctgcc accacggatg ccaatgtcaa aacactgttt
     9061 gggattgcgt tttagagttt gcggaactcg gtgttcttca cactgtgctt aatctcttta
     9121 ttaataagat taagcaatag catggagcga gcctcaccat cgggttcggt gaaaatggcc
     9181 tgaaagcctt cgaacgcgcc ttcggtaata atcaccttat cacccggata aggggttgcc
     9241 ggatcgacaa tgtctttcgg tttatatacc gatagctgat gaatcaccgc cgatgggact
     9301 atcgctggcg acgcgccaaa gcgcacgaag tggctgacac cgcgggtcgc gttgatagtc
     9361 gtggtatgaa tcacttctgg atcaaattcg acaaacaggt agttgggaaa caatggctca
     9421 ctgactgcag tacgttttcc acgcacgatt ttttccaggg tgatcatcgg tgccaggcaa
     9481 ttcacagcct gtctttcgag gtgttcctgg gcacgttgaa gttgcccgcg cttgcagtac
     9541 agtaaatacc aggattgcat aatgactctt atccgtttaa tcggggcgca aggatagcaa
     9601 aagctttacg ctaagttaat tatattcccc ggtttgcgtt ataccgtcag agttcacgct
     9661 aatttaacaa atttacagca tcgcaaagat gaacgccgta taatgggcgt agattaagag
     9721 gctacaatgg acgccatgaa atataacgat ttacgcgact tcttgacgct gcttgaacag
     9781 cagggtgagc taaaacgtat cacgctcccg gtggatccgc atctggaaat cactgaaatt
     9841 gctgaccgca ctttgcgtgc cggtgggcct gcgctgttgt tcgaaaaccc taaaggctac
     9901 tcaatgccgg tgctgtgtaa cctgttcggt acgccaaagc gcgtggcgat gggcatggga
     9961 caggaagatg tttcggcgct gcgtgaagtt ggtaaattat tggcgtttct gaaagagccg
    10021 gagccgccaa aaggtttccg cgacctgttt gataaactgc cgcagtttaa gcaagtattg
    10081 aacatgccga caaagcggct gcgtggtgtg ccctgccaac aaaaaatcgt ctctggcgat
    10141 gacgtcgatc tcaatcgcat tcccattatg acctgctggc cggaagatgc cgcaccgctg
    10201 attacctggg ggctgacagt gacgcgcggc ccgcataaag agcggcagaa tctgggcatt
    10261 tatcgccagc agctgattgg taaaaacaaa ctgattatgc gctggctgtc gcatcgcggc
    10321 ggcgcgctgg attatcagga gtggtgtgcg gcgcatccgg gcgaacgttt cccggtttct
    10381 gtggcgctgg gtgccgatcc cgccacgatt ctcggtgcag tcacccccgt tccggataca
    10441 ctttcagagt atgcgtttgc cggattgctg cgcggtacca agaccgaagt ggtgaagtgt
    10501 atctccaatg accttgaagt gcccgccagt gcggagattg tgctggaagg gtatatcgaa
    10561 caaggcgaaa ctgcgccgga agggccgtat ggcgaccaca ccggttacta taacgaagtc
    10621 gatagtttcc cggtatttac cgtgacgcat attacccagc gtgaagatgc gatttaccat
    10681 tccacctata ccgggcgtcc gccagatgag cccgcggtac tgggcgtggc gttgaacgaa
    10741 gtgtttgtac cgattctgca aaaacagttc ccggaaattg tcgattttta cctgccgccg
    10801 gaaggctgtt cttatcgtct ggcggtagtg acgatcaaaa aacagtacgc cggacacgcg
    10861 aagcgcgtca tgatgggcgt ctggtcgttc ttacgccagt ttatgtacac taaatttgtg
    10921 atcgtttgcg atgatgacgt caacgcacgc gactggaacg atgtgatttg ggcgattacc
    10981 acccgtatgg acccggcgcg ggatactgtt ctggtagaaa atacgcctat tgattatctg
    11041 gattttgcct cgcctgtctc cgggctgggt tcaaaaatgg ggctggatgc cacgaataaa
    11101 tggccggggg aaacccagcg tgaatgggga cgtcccatca aaaaagatcc agatgttgtc
    11161 gcgcatattg acgccatctg ggatgaactg gctattttta acaacggtaa aagcgcctga
    11221 tgcgcgtttg ttttgcccta tttatcgatc cgacagagaa agcgcatgac aaccttaagc
    11281 tgtaaagtga cctcggtaga agctatcacg gataccgtat atcgtgtccg catcgtgcca
    11341 gacgcggcct tttcttttcg tgctggtcag tatttgatgg tagtgatgga tgagcgcgac
    11401 aaacgtccgt tttcaatggc ttcgacgccg gatgaaaaag ggtttataga gctgcatatt
    11461 ggcgcttctg aaatcaacct ttacgcgaaa gcagtcatgg accgcatcct caaagattat
    11521 caaatcgtgg tcgatattcc ctacggagaa gcgtggctgc gcgatgatga agagcgtccg
    11581 atgattttga ttgcgggcgg caccgggttc tcctatgcgc gctcgatttt attgacggcg
    11641 ttggcgcgta atcccaatcg cgatatcacc atttactggg gtgggcgtga ggagcaacat
    11701 ctttatgatc tctccgagct tgaggcgctt tcgctgaagc atcctggcct gcgtgtggtg
    11761 ccggtggttg aacaaccgga agcgggctgg cgtgggcgta ctggcaccgt gttaacggcg
    11821 gtcttgcagg atcatggtac gctggcagag catgatatct atattgccgg acgttttgag
    11881 atggcgaaaa ttgctcgtga cctgttttgc agtgagcgta atgcgcggga agatcgtctg
    11941 tttggcgatg cgtttgcatt tatctgagat ataaaaaaac ccgcccctga caggcgggaa
    12001 gaacggcaac taaaacttta ttcagtggca tttagatcta tgtcgcatcc ggcaatcggt
    12061 gcacgatgcc tgatgcgacg ctggcgcgtc ttatcaggcc tacattggtg caggatcggt
    12121 agaccggata aggcgttcac gccgcatccg gcaagtggtt aaacccgctc aaacaccgtc
    12181 gcaataccct gacccagacc gatacacatc gtcgccagac caaactgaac gtctttgcgt
    12241 tccatcagat tcagcagcgt ggtgctgata cgcgcaccgg aacagcccag cggatgaccc
    12301 agcgcgatcg caccaccatt gaggttgatc ttctcgtcaa tctgctccat tagcccgaga
    12361 tctttaatgc acggcaggat ctgcgcggca aaggcttcgt tcatctcaaa cacgccgata
    12421 tcgctggcag aaagccccgc ttttttcagc gccagcttcg aggccggaac cgggccgtaa
    12481 cccataatcg atgggtcaca accaacgacc gccatcgaac gcacacgagc gcgcggctta
    12541 agacctaatt catgggcgcg gctttcactc atcaccagca tggcagctgc gccatcggaa
    12601 agtgcagaag atgtgcccgc cgttaccgta ccgtttactg gatcaaacgc cggacgcagc
    12661 gtggcgaggg cttccacggt agtttccggt cgaatcacct cgtcgtaatt aaactgcttc
    12721 aggacgccgt cggcatcgtg accaccggtc gggatgattt catttttaaa tgcgcccgac
    12781 tgcgtggcgg cccaggcgcg ggcgtgtgac cgcgcggcaa aggcatcctg catttcacgg
    12841 ctgataccgt gcatacgcgc cagcatttct gccgttaagc ccatcatgcc cgccgctttg
    12901 gcgacattgc ggctcaggcc ggggtgaaaa tcgacgccgt gactcattgg cacatggccc
    12961 atatgctcca cgccgccaac cagacatgcc tgcgcatcgc cagtcatgat cattcgtgct
    13021 gcgtcatgca gtgcctgcat ggatgaacca cacaagcgat tgacggtaac cgccgggaca
    13081 gagtgcggca cttctgccag cagcgccgcg ttacgggcga tattaaaacc ctgctccagc
    13141 gtctgctgca cacaacccca gtaaatatcg tcgagggccg ccgcttccag cgccgggtta
    13201 cgcgccagca ggctacgcat taaatgagcg gagagatctt ctgcacgcac gttacgaaaa
    13261 gcaccgccct tcgaacggcc catcggggtg cgaattgcat cgacaatgac aacctgttcc
    13321 attgtgactc cttaagccgt tttcaggtcg ccaaccggac gggctggctc aaccggagga
    13381 tagtacggtt cgttatgacg cgctttatta cgcagacctt ccggcacttc atacagcggg
    13441 ccgaggtgct gatattgctg tgccatatcg aggtattttg cgctaccgag ggtgtccagc
    13501 cagcggaacg cgccgccgtg gaacggaggg aagcccaggc cgtagaccag cgccatatcc
    13561 gcttccgccg gagtggcgat aatgccctct tccagacagc ggaccacttc gttgaccatc
    13621 gggatcatca tgcgggcgat aatctcttct tcgctgaaat cgcgcttcgg ctggctcact
    13681 tctgccagca ggtcttcaac ggcggcgtct tcttctttct tcggcttacc tttgctgtct
    13741 tctttataac gccagaaacc gaggccgttc ttctgaccaa agcggttggc atcaaacagc
    13801 gcgtcgatgg catcgcggta atctttctgc atccgctgcg ggaagcctgc tgccatgaca
    13861 gcctgagcgt gatgcgcggt atcaatgccc acgacatcca gcagatatgc cggacccata
    13921 ggccagccaa actgtttttc catcactttg tcgatcttgc ggaaatctgc gccgtcgcgc
    13981 agcagctggc tgaaaccggc gaaatacggg aacagcacgc ggttaacaaa gaagccgggg
    14041 cagtcgttaa ccacaatcgg cgtcttgccc atcttgctcg cccaggcgac aactttcgcg
    14101 atggtttcgt cggagctttt ctcgccgcga ataatttcta ccaacggcat ccggtgtacc
    14161 gggttaaaaa agtgcattcc gcagaagttt tccgggcgtt ccagcgcgtt ggccagttcg
    14221 ctgataggaa tggttgaagt gttagacgcc agcacggtat ccgggcgtac tttttgttcg
    14281 gtttctgcca gtacggcttt tttcactttc gggttttcga caaccgcttc taccacaaca
    14341 tccacgcggt caaacccggc gtagtcgagc gttgggtgga tcgtggagat cacgccagcc
    14401 agtttcagac catcgatctt gccgcgttca agctgcttgt tcagcagttt cgcggcttcg
    14461 gtcatgccga gggttaacga cttgtcgttg atatctttca tgacaaccgg tacgcctttc
    14521 cacgcagact ggtaagcaat gccgccaccc atgatgcctg cgcccagtac agcggcctgt
    14581 ttcggtgttt caacgtcttt ggtgagtttc ttcgctttgc cttttacata ttgatcgtta
    14641 aggaaaatgc cgaccagtgc gcgggcttcg ttggtgtgcg ccagcgggac aaagcttttg
    14701 ttttccagat ttaatgcttc ttcacgacca aaacgggccg cagcttcaat ggtttttact
    14761 gcggtgatgg gcgccggata atgtttcccc gccgtttgtg cgaccatccc tttagcgatg
    14821 gtgaagctca tggtggcttc aatcttgctc agttttagtg gttccagctt cggctgacgt
    14881 tttgctttcc agtcgaggtc gccgttaatg gcctggcgta aaaccgcctt tgcgccttca
    14941 accagttttt ctgctttgac tacgccatcc accagaccga ttttcagcgc ctgatccgcg
    15001 ccgacatctt taccggcggc aatgatttcc agcgcactgt cagcgcccag catacgtggc
    15061 atacgtacag aaccgccaaa gcccggcatg atgcccagtt tggtttccgg cagaccgatg
    15121 cgcagatccg gcgtcgccag acgataatcg gtcgccagca cgcattcgca gccaccaccc
    15181 agcgcatagc cgttgacggc agcaatggtc ggcaccggca gatcttccag gcgattaaac
    15241 acgctattgg caaagtgcag ccactgactt aactgttctt caggaacgag gaacagggac
    15301 aaaaattcgg tgatatcagc accgacgata aaggctgctt tgttcgaacg cagcagcagc
    15361 ccttttagat ctgattgctg ttccagcacg ccgatggcct cgccgaggct ggcgacggtc
    15421 gcagtgtcga gtttattaac tgaacctggg gcatcaaata ccagttcggc aatgccatct
    15481 tccagccagt caaggtacag ggtgtcgcct ttgtaaagca tgtcagtctc ctgaatccgc
    15541 aaggtgatct ggtcgtacca gatgcatcga agtgtgtatt ttgtgttaaa aatatgcaaa
    15601 taaaagatta aagaaatgcc gatctgatca cgctcggcag aaatcacgct ctggatgaac
    15661 gatgtgctaa gatgcggaga cttaaggtca aaaaaacaga agggtaaaaa atggaatcac
    15721 tggcctcgct ctataaaaat catatagcta ccttacaaga acggactcgc gatgcgctgg
    15781 cgcgcttcaa gctggatgca ttacttattc actccggcga gctgttcaac gtttttctcg
    15841 acgatcatcc ctatccgttt aaagtgaacc cgcaattcaa agcgtgggtg ccggtaactc
    15901 aggtgccaaa ctgctggttg ctggtggatg gcgtgaacaa gccgaaactg tggttctatc
    15961 tgccggttga ttactggcac aacgtcgaac cgctgccgac ctccttctgg actgaagatg
    16021 tggaagtgat cgcactgccg aaagccgatg gcattggtag cctgctgccc gctgcacgcg
    16081 gcaatatcgg ttatatcggt ccggtgccgg aacgtgcgct gcaactgggt attgaggcca
    16141 gcaacatcaa cccgaaaggg gtgatcgact acctgcatta ctaccgctcc ttcaaaaccg
    16201 agtacgaact ggcctgtatg cgtgaagcgc agaaaatggc ggtcaacggt catcgtgcgg
    16261 cagaagaagc gttccgttct ggcatgagcg agttcgatat caacatcgcc tatctgaccg
    16321 cgaccggtca tcgtgatacc gacgtacctt acagcaacat tgtggcgctt aacgaacacg
    16381 cttcggtgct gcattacacc aaactggatc atcaggcacc ggaagagatg cgcagcttcc
    16441 tgctggatgc cggggccgaa tataacggct atgcggctga cctgactcgt acctggtcgg
    16501 caaaaagcga caacgactac gcacagctgg tgaaagacgt aaatgatgaa caacttgcgc
    16561 tgatcgccac catgaaagct ggcgtcagct atgtggatta ccacctccag ttccatcagc
    16621 gcattgccaa attgctgcgt aaacatcaaa tcatcaccga tatgagtgaa gaagcgatgg
    16681 tcgaaaacga tctcaccgga ccgtttatgc cgcacggtat cggccatccg ctgggcctgc
    16741 aggtgcatga cgtagccggt tttatgcagg atgatagcgg tacacacctc gcggcaccgg
    16801 caaaatatcc gtacctgcgc tgcacccgta ttctccagcc gggcatggtg ttaaccatcg
    16861 aaccgggtat ctacttcatc gaatcgctac tggcaccgtg gcgtgaaggg cagttcagca
    16921 agcacttcaa ctggcagaaa attgaagcac tgaaaccgtt cagcggcatt cgtatcgaag
    16981 acaacgtggt gatccacgaa aataacgtgg aaaacatgac ccgggatctg aaactggcgt
    17041 gatggaaagc tggttaattc ctgcggcacc ggtcacggtc gttgaagaga tcaaaaagag
    17101 ccgcttcata acgatgttgg cgcataccga tggcgttgag gcggcgaaag cgtttgttga
    17161 atcggtgcgg gcagaacacc ccgatgcccg ccaccattgc gtggcgtggg tggcgggtgc
    17221 gccggatgat tctcaacagc tgggtttctc tgacgacggg gagccggcgg gaacggcagg
    17281 taaaccgatg ctcgcccagc taatgggcag cggcgtcggg gaaattaccg ctgtggtagt
    17341 gcgctactac ggcggcatat tgcttggcac cggtgggtta gtgaaagcgt atggcggcgg
    17401 cgtgaatcag gcgctgcgcc agctaacgac ccaacgcaag acgccattaa ccgaatatac
    17461 tttgcaatgt gaatatagtc agttaaccgg cattgaagcg ttgctggggc agtgtgacgg
    17521 caaaattatc aacagtgatt atcaggcatt cgttctgctg cgggtggcgc ttccggcggc
    17581 gaaagtggct gaattttccg caaagctggc ggattttagc cgtggttcat tgcaattgtt
    17641 agcgattgaa gaataatccc cacttcgttt tgcagaacta aggaagcggc agagatgcat
    17701 tttcgcgcca ttacccgaat cgttggacta ctggtcatct tattttcagg gaccatgatt
    17761 atccctgggc tggtagcact catctaccgg gatggagcgg gccgcgcttt tacccagacc
    17821 ttttttgtcg ccctcgccat tggctctatg ctgtggtggc cgaaccgcaa agagaagggc
    17881 gaactgaaat cccgtgaggg gtttctgata gtggtgctgt tttggaccgt gctgggtagt
    17941 gtcggtgcgc tcccttttat cttctcggaa agcccgaacc tcacgattac cgatgcgttt
    18001 tttgaatctt tctctggcct gaccaccacc ggggccacta cgctggtggg gctggattcg
    18061 ctccctcatg ccatcctctt ttatcgccag atgctgcaat ggtttggcgg gatggggatc
    18121 atcgtgttag cggttgcgat actgcctatc ctcggcgtgg gtgggatgca gctctatcgc
    18181 gcagaaatgc ccggcccgct gaaagataac aaaatgcgcc cgcgaattgc ggaaacggcg
    18241 aaaaccctgt ggttgattta tgtcttgctg accgtcgcct gtgcgctggc gttgtggttt
    18301 gccggaatgg atgcctttga tgccatcggc catagctttg cgactatcgc tattggcggc
    18361 ttctcgacac atgatgccag tatcggttat ttcgacagtc cgactattaa cactatcatt
    18421 gctatcttcc tgctgatctc cggttgtaac tacggtctgc acttttcact gttaagtggg
    18481 cgtagtctga aggtttattg gcgcgatccg gaatttcgca tgtttatcgg cgtacagttt
    18541 acgctggtgg ttatttgtac actcgtactg tggtttcata atgtctacag ttcggcgctg
    18601 atgacaatta accaggcgtt tttccaggtg gtatcgatgg cgacaaccgc cgggtttacg
    18661 actgacagca ttgcccgctg gccgctcttt ttgccggtac tgcttttatg ttcagctttt
    18721 atcggcggtt gcgccgggtc aacgggcggt ggcctgaaag tgatccgcat cctgctgctg
    18781 tttaagcagg ggaaccgtga gctgaaacga ctggtgcatc cgaacgccgt ctatagcatt
    18841 aagctgggga atcgcgcact gccggaacgt atcctcgaag ccgtttgggg atttttctcc
    18901 gcctatgcat tggtgtttat tgtcagtatg ctggcgatta tcgccacggg cgtggatgat
    18961 ttttctgcct ttgcctcagt tgttgcgaca ttgaataacc tggggccagg gcttggcgtg
    19021 gttgctgata actttaccag tatgaacccg gtggctaaat ggatcctgat tgccaacatg
    19081 ctgtttggtc gtctcgaggt ctttacattg ctggtgctct ttaccccgac tttctggcgt
    19141 gaatgatgga gtaatacgtg aaaacattaa ttcttttctc aacaagggac ggacaaacgc
    19201 gcgagattgc ctcctacctg gcttcggaac tgaaagaact ggggatccag acggatgtcg
    19261 ccaatgtgca ccgcattgaa gaaccacaat ggaaaaacta tgaccgtgtg gtcattggtg
    19321 cttctattcg ctatggtcac taccactctg cgttccagga atttgtcaaa aaacatgcga
    19381 cgcgactgaa ttcgatgccg agcgcctttt attccgtaaa cctggtggcg cgcaaaccgg
    19441 agaagcgtac tccacagacc aacagctacg cgcgcaagtt tctgatgagt tcacaatggc
    19501 gtcccgatcg ctgcgcggtc attgccgggg cgctgcgtta cccacgttat cgctggtacg
    19561 accgttttat gattaagctg attatgaaga tgtcaggcgg tgaaacggat acgcgcaaag
    19621 aagttgtcta taccgattgg gagcaggtgg cgaatttcgc ccgagaaatc gcccagttaa
    19681 ccaacaaacc gacgctgaaa taagcataaa gaataaaaaa tgcgcggtca gaaagttatt
    19741 ttaaatttcc tcttgtcagg ccggaataac tccctataat gcgccaccac tgacacggaa
    19801 taacggcaaa cacgccgccg ggtcagcggg gttctcctga gaatctcaac agagaaaagc
    19861 aaaaaaatgc ttgactctgt agcgggaaag cgtattatgc acaccccgca tcgctgagaa
    19921 aaagcga
//
LOCUS       DADMHM010000060        19888 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.061, whole genome shotgun sequence.
ACCESSION   DADMHM010000060 DADMHM010000000
VERSION     DADMHM010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19888)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19888)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19888
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.061"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(82..879)
                     /locus_tag="JN125_001895"
     CDS             complement(82..879)
                     /locus_tag="JN125_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HAY8871694.1"
                     /translation="MSAGQRKEQKLIPVERRQIILEMVAEKGIVSIAELTDRMNVSHM
                     TIRRDLQKLEQQGAVVLVSGGVQSPGRVAHEPSHQVKTALAMTQKAAIGKLAASLVQP
                     GSCIYLDAGTTTLAIAQHLIHMESLTVVTNDFVIANYLLDNSNCTIIHTGGAVCRENR
                     SCVGEAAATMLRSLMIDQAFISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDA
                     TKYGQVATWLALPLSEFDQIITDDGLPESASRALAKQDLSLLVAKNE"
     gene            1045..1953
                     /locus_tag="JN125_001896"
     CDS             1045..1953
                     /locus_tag="JN125_001896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HAY8871695.1"
                     /translation="MKTGSEFHVGIVGLGSMGMGAALSCVRAGLSTWGADLNSNACAT
                     LKEAGACGVSDNAATFAEKLDALLVLVVNAAQVKQVLFGETGVAQHLKPGTAVMVSST
                     IASADAQEIATALAGFDLEMLDAPVSGGAVKAANGEMTVMASGSDIAFERLAPVLEAV
                     AGKVYRIGAEPGLGSTVKIIHQLLAGVHIAAGAEAMALAARAGIPLDVMYDVVTNAAG
                     NSWMFENRMRHVVDGDYTPHSAVDIFVKDLGLVADTAKALHFPLPLASTALNMFTSAS
                     NAGYGKEDDSAVIKIFSGITLPGAKS"
     gene            1950..3211
                     /locus_tag="JN125_001897"
                     /pseudo
     CDS             1950..3211
                     /locus_tag="JN125_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001649192.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="four-carbon acid sugar kinase family protein"
     gene            3208..3846
                     /locus_tag="JN125_001898"
     CDS             3208..3846
                     /locus_tag="JN125_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldolase"
                     /protein_id="HAY8871696.1"
                     /translation="MSDFAKVEQSLREEMTRIASSFFQRGYATGSAGNLSLLLPDGNL
                     LATPTGSCLGNLDPQRLSKVAADGEWLSGDKPSKEVLFHLALYRNNPRCKAVVHLHST
                     WSTALSCLQGLDSSNVIRPFTPYVVMRMGNVPLVPYYRPGDKRIAQDLAELAADNQAF
                     LLANHGPVVCGESLQEAANNMEELEETAKLIFILGDRPIRYLTAGEIAELRS"
     gene            3851..4627
                     /locus_tag="JN125_001899"
     CDS             3851..4627
                     /locus_tag="JN125_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr family phosphocarrier protein"
                     /protein_id="HAY8871697.1"
                     /translation="MPRFAANLSMMFTEVPFIERFAAARKAGFDAVEFLFPYDYSTLQ
                     IQKQLEQNHLTLALFNTAPGDINAGEWGLSALPGREHEAHADIDLALEYALALNCEQV
                     HVMAGVVPAGEDAERYRAVFIDNLRYAADRFAPHGKRILVEALSPDVKPHYLFSSQYQ
                     ALAIVEEVARDNVFIQLDTFHAQKVDGNLTHLIRDYAGKYAHVQIAGLPDRHEPDDGE
                     INYPWLFRLFDEVGYQGWIGCEYKPRGLTEEGLGWFDAWR"
     gene            4716..6080
                     /locus_tag="JN125_001900"
     CDS             4716..6080
                     /locus_tag="JN125_001900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntP family transporter"
                     /protein_id="HAY8871698.1"
                     /translation="MSTITLLYIALAGVIMLLLLVIKAKVQPFVALLLVSLLVALAAG
                     IPAGEVGKVMIAGMGGVLGSVTIIIGLGAMLGRMIEHSGGAESLANYFSRKLGDKRTI
                     AALTLAAFFLGIPVFFDVSFIILAPIIYGFAKVAKISPLKFGLPVAGIMLTVHVAVPP
                     HPGPVATAGLLHADIGWLTIIGIAISIPVGIVGYFAAKIINKRQYAMSVEVLEQMQLA
                     PASEEGATKLSDKINPPGVALVTSLIVIPIAIIMTGTVSATLMPPSHPLLGTLQLIGS
                     PMVALMIALVLAFWLLALRRGWSLQHTSDIMGSALPTAAVVILVTGAGGVFGKVLVES
                     GVGKALANMLQMIDLPLLPAAFIISLALRASQGSATVAILTTGGLLSEAVMGLNPIQC
                     VLVTLAACFGGLGASHINDSGFWIVTKYLGLSVADGLKTWTVLTTILGFTGFLITWCV
                     WAVI"
     gene            complement(6174..7166)
                     /gene="rpoS"
                     /locus_tag="JN125_001901"
     CDS             complement(6174..7166)
                     /gene="rpoS"
                     /locus_tag="JN125_001901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoS"
                     /protein_id="HAY8871699.1"
                     /translation="MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEE
                     LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLV
                     VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
                     QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNER
                     ITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLAR
                     RFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE"
     gene            complement(7229..8320)
                     /gene="nlpD"
                     /locus_tag="JN125_001902"
     CDS             complement(7229..8320)
                     /gene="nlpD"
                     /locus_tag="JN125_001902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein hydrolase activator NlpD"
                     /protein_id="HAY8871700.1"
                     /translation="MSAGSPKFTVRRIAALSLVSLWLAGCSDTSNPPAPVSSVNGNAP
                     ANTNSGMLITPPPKMGTTSTAQQPQIQPVQPVAQQPVQMENGRIVYNRQYGNIPKGSY
                     SGSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVGQTLQVGNASGTPITGG
                     NAITQADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSANKMLPNNKPAATTVTA
                     PVTVPTASTTEPTVSSTSTSTPISTWRWPTEGKVIETFGASEGGNKGIDIAGSKGQAI
                     IATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVKAGQKIATMG
                     STGTSSTRLHFEIRYKGKSVNPLRYLPQR"
     gene            complement(8460..9086)
                     /gene="pcm"
                     /locus_tag="JN125_001903"
     CDS             complement(8460..9086)
                     /gene="pcm"
                     /locus_tag="JN125_001903"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate O-methyltransferase"
                     /protein_id="HAY8871701.1"
                     /translation="MVSRRVQALLDQLRAQGIQDEQVLNALAAVPREKFVDEAFEQKA
                     WDNIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVQHVCS
                     VERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMT
                     QLDEGGILVLPVGEEHQYLKRVRRRGGEFIIDTVEAVRFVPLVKGELA"
     gene            complement(9080..9841)
                     /gene="surE"
                     /locus_tag="JN125_001904"
     CDS             complement(9080..9841)
                     /gene="surE"
                     /locus_tag="JN125_001904"
                     /EC_number="3.1.3.5"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HAY8871702.1"
                     /translation="MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNS
                     LTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVI
                     YSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINV
                     PDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVD
                     EGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW"
     gene            complement(9822..10871)
                     /gene="truD"
                     /locus_tag="JN125_001905"
     CDS             complement(9822..10871)
                     /gene="truD"
                     /locus_tag="JN125_001905"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HAY8871703.1"
                     /translation="MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHI
                     LVRILKNGCNTRFVADALAKFLKIHAHEVSFAGQKDKHAVTEQWLCARVPGKEMPDLS
                     AFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYF
                     GAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQ
                     VVDGDALQLAGRGSWFVATTEELAELQHRVNDKELMITAALPGSGEWGTQREALAFEQ
                     AAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVV
                     RELINTTGDYAHIAE"
     gene            complement(10868..11347)
                     /gene="ispF"
                     /locus_tag="JN125_001906"
     CDS             complement(10868..11347)
                     /gene="ispF"
                     /locus_tag="JN125_001906"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HAY8871704.1"
                     /translation="MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHAL
                     TDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQA
                     PKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK"
     gene            complement(11347..12057)
                     /gene="ispD"
                     /locus_tag="JN125_001907"
     CDS             complement(11347..12057)
                     /gene="ispD"
                     /locus_tag="JN125_001907"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HAY8871705.1"
                     /translation="MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHA
                     LLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWV
                     LVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGL
                     WHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPE
                     DLALAEFYLTRTIHQENT"
     gene            complement(12076..12387)
                     /gene="ftsB"
                     /locus_tag="JN125_001908"
     CDS             complement(12076..12387)
                     /gene="ftsB"
                     /locus_tag="JN125_001908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsB"
                     /protein_id="HAY8871706.1"
                     /translation="MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNA
                     KLKARNDQLFAEIDDLNGGQEALEERARNELSMTKPGETFYRLVPDASKRAQSAGQNN
                     R"
     gene            complement(12581..12904)
                     /locus_tag="JN125_001909"
     CDS             complement(12581..12904)
                     /locus_tag="JN125_001909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3561 family protein"
                     /protein_id="HAY8871707.1"
                     /translation="MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPML
                     IYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALF
                     MWLLG"
     gene            complement(12954..13559)
                     /gene="cysC"
                     /locus_tag="JN125_001910"
     CDS             complement(12954..13559)
                     /gene="cysC"
                     /locus_tag="JN125_001910"
                     /EC_number="2.7.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyl-sulfate kinase"
                     /protein_id="HAY8871708.1"
                     /translation="MALHDENVVWHSHPVTVQQRELHHCHRGVVLWFTGLSGSGKSTV
                     AGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLV
                     VLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFT
                     GIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS"
     gene            complement(13559..14986)
                     /gene="cysN"
                     /locus_tag="JN125_001911"
     CDS             complement(13559..14986)
                     /gene="cysN"
                     /locus_tag="JN125_001911"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysN"
                     /protein_id="HAY8871709.1"
                     /translation="MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLI
                     GRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF
                     STEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGI
                     KHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSE
                     SMSWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQ
                     RVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAV
                     QSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGISYQVDINNLTQREVENLPLNG
                     IGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPKNEAAVASSEFSA
                     FELELNALVRRHFPHWGARDLLGDK"
     gene            complement(14988..15896)
                     /gene="cysD"
                     /locus_tag="JN125_001912"
     CDS             complement(14988..15896)
                     /gene="cysD"
                     /locus_tag="JN125_001912"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase subunit CysD"
                     /protein_id="HAY8871710.1"
                     /translation="MAQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVML
                     HLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINP
                     FVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDP
                     KNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLE
                     RDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNSQTLPEIIEEMLVST
                     TSERQDRVIDRDQAGSMELKKRQGYF"
     gene            16148..17185
                     /gene="iap"
                     /locus_tag="JN125_001913"
     CDS             16148..17185
                     /gene="iap"
                     /locus_tag="JN125_001913"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase isozyme conversion
                     aminopeptidase"
                     /protein_id="HAY8871711.1"
                     /translation="MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFF
                     PGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIA
                     AHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKN
                     TPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGV
                     KTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSV
                     EATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIM
                     LPLVKELAKAS"
     gene            complement(17392..17685)
                     /gene="cas2"
                     /locus_tag="JN125_001914"
     CDS             complement(17392..17685)
                     /gene="cas2"
                     /locus_tag="JN125_001914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated endoribonuclease
                     Cas2"
                     /protein_id="HAY8871712.1"
                     /translation="MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIW
                     QQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ"
     gene            complement(17685..18604)
                     /gene="cas1e"
                     /locus_tag="JN125_001915"
                     /pseudo
     CDS             complement(17685..18604)
                     /gene="cas1e"
                     /locus_tag="JN125_001915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311636.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated endonuclease Cas1"
     gene            complement(18601..19251)
                     /gene="cas6e"
                     /locus_tag="JN125_001916"
     CDS             complement(18601..19251)
                     /gene="cas6e"
                     /locus_tag="JN125_001916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000281458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein
                     Cas6/Cse3/CasE"
                     /protein_id="HAY8871713.1"
                     /translation="MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPSGKERQ
                     FLYRREELQGAFRFFVLSQERPAESDTFTIECRSFAPELCTGQQLCFNLRANPTICKA
                     GKRHDLLMEAKRQVRGQAEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQ
                     LRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA"
     gene            complement(19233..>19888)
                     /gene="cas5e"
                     /locus_tag="JN125_001917"
     CDS             complement(19233..>19888)
                     /gene="cas5e"
                     /locus_tag="JN125_001917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type I-E CRISPR-associated protein Cas5/CasD"
                     /protein_id="HAY8871714.1"
                     /translation="SRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWAR
                     DYHTVQMPKEVRKARYFSRREELSDPELLSAIISRRDYYTDAWWMVAVATTADAPYSL
                     EQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNACDALCNAYQQYQDHFHKLKVSL
                     PKLQDECWWEGKHDGLVASKILRRRDVPLNRQQWLFGERTVNQGPWLSKEEPCTSQE"
BASE COUNT         4690 a         5399 c         4986 g         4813 t
ORIGIN      
        1 cggtggagct gcatgacaag gtcatcgggc attatctgaa cataaaacac tatcagtaag
       61 ttggagtcat tacccaggcc attattcatt tttcgctacc agcaaagaga gatcctgctt
      121 cgccagcgcg cgactggcac tctccggcaa accgtcgtct gtaataatct gatcaaactc
      181 gcttaatggt aacgccagcc atgtcgccac ctgaccatat ttcgtcgcat cacagaccaa
      241 aactcgctgg cggctggcac tagcaatcgc ccgtttcacc gtgactttat cttccgctgg
      301 cgtagaaatc ccccgcacac tccatgacga tgcagaaata aaagcctgat caatcatcag
      361 gctgcgcagc atggtcgcag cggcttcccc gacacaggaa cggttttccc gacacactgc
      421 accgccagtg tgaataattg tgcaattact gttgtcgagc aagtagttcg caataacgaa
      481 atcgtttgtg accacagtca gtgactccat gtgaatcaga tgctgtgcta tcgctaacgt
      541 ggtcgttccc gcatccagat agatacaact tcccggctga acaagacttg ccgccagctt
      601 gccaatagcc gctttttgcg tcattgccag cgcagttttt acctgatgag aaggttcatg
      661 cgccacgcgt cccggagact ggacgcctcc ggacaccagc acaacggctc cctgctgctc
      721 cagtttttgt aaatcccgac gaatggtcat atgtgacaca ttcattctgt ccgttagttc
      781 agcaatactg acaatgcctt tttcagctac catctcaagg atgatttggc gacgctctac
      841 gggtatcaac ttttgctcct tcctttgtcc tgctgacatt ctacgctatt tgcctgcgaa
      901 acgtgcgcgg cgcaactaac gcttagttca cataaaataa cacgcaatgt taatttatgt
      961 gaatcagctc accatatcgt tatctcccag cgcttatatt cacaatatca aacaaaatat
     1021 cacttaaatt aacagggaga gcagatgaaa acgggatctg agtttcatgt cggtatcgtt
     1081 ggcttagggt caatgggaat gggagcagca ctgtcatgtg tccgcgcagg tctttctacc
     1141 tggggcgcag acctgaacag caatgcctgc gctacgttga aagaggcagg tgcttgcggg
     1201 gtttctgata acgccgcgac gtttgccgaa aaactggacg ctctgctggt gctggtggtc
     1261 aatgcggccc aggttaaaca ggtgctgttt ggtgaaacag gcgttgcaca acatctgaaa
     1321 cccggtacgg cagtaatggt ttcttccact atcgctagtg ctgatgcgca agaaattgct
     1381 accgctctgg ctggattcga tctggaaatg ctggatgcgc cagtttctgg tggtgcagta
     1441 aaagccgcta acggtgaaat gactgtcatg gcctccggta gcgatattgc ctttgaacga
     1501 ctggcacccg tgctggaagc cgttgccgga aaagtttatc gcataggtgc agaaccggga
     1561 ctaggttcga ccgtaaaaat tattcaccag ttgttagcgg gcgtacatat tgctgccgga
     1621 gccgaagcga tggcacttgc agcccgtgcg gggatcccgc tggatgtgat gtatgacgtc
     1681 gtgaccaatg ccgccggaaa ttcctggatg ttcgaaaacc ggatgcgtca tgtggtggat
     1741 ggcgattaca ccccgcattc agccgtcgat atttttgtta aggatcttgg tctggttgcc
     1801 gatacagcca aagccctgca cttcccgctg ccattggcct caacagcatt gaatatgttc
     1861 accagcgcca gtaacgcagg ttacgggaaa gaagacgata gcgcagttat caagattttc
     1921 tctggcatca ctctaccggg agcgaaatca tgatcaagat tggcgttatc gccgatgatt
     1981 ttaccggcgc gacggatatc gccagttttc tggtggaaaa cggtctacca acggtacaaa
     2041 ttaacggtgt tccaacaggt aaaatgccgg aagcaatcga cgcactggtg atcagcctga
     2101 aaacgcgctc ctgtccggtg gttgaagcca cacagcaatc gctggcggct ctgagctggt
     2161 tgcaacagca aggttgcaaa cagatctatt tcaaatactg ctctactttc tacagtacgg
     2221 cgaaaggtaa tatcggcccg gttaccgatg cattaatgga tgctctcgac acgccgttta
     2281 cggtcttctc tccggccctg tcggtcaacg gacgtacggt ttatcagggg tatttgttcg
     2341 taatgaatca actgctggcc gaatccggga tgcgccatca cccggtaaat cccatgaccg
     2401 acagctatct tccccgtctg gttgaagcgc aatccacagg gcgctgcggc gtcgtttcgg
     2461 cacatgtttt cgaacaaggt gtggatgccg ttcgtcaaga gctggctcgc ttacagcaag
     2521 agggctaccg ctacgcggtg cttgatgcgc tgaccgaaca ccatctggaa attcagggag
     2581 aagccttgcg cgatgcccca ctggtaacgg gcggttctgg tctggcgatt ggcctggccc
     2641 ggcagtgggc gcaagaaaac ggtaaccagg ctcgcgaagc agggcatccg ctcgctgggc
     2701 gcggcgtagt gctctccggt tcatgctctc aaatgaccaa ccgccaggtg gcacattacc
     2761 gtcaaattgc accagcccgt gaagttgatg tggcacgctg cctctcaacc gaaactctgg
     2821 ccgcttatgc acacgaactg gcagagtggg ttctgggcca ggaaagtgta cttgctccac
     2881 tggtttttgc caccgccagc actgacgcat tggcagcaat tcaacagcaa tacggtgcac
     2941 aaaaagccag tcaggcagta gaaactctgt tttctcaact agcggcgcgg ttagcagcgg
     3001 aaggcgtgac acgctttatt gtcgcaggcg gtgagacctc cggcgtagtc acacagagcc
     3061 tgggcataaa agggtttcat attggcccaa ccatttcccc cggcgtgccg tgggtaaacg
     3121 cactggataa gcctgtctca ctcgccctta aatctggcaa cttcggtgat gaagcctttt
     3181 ttcacgagcc caaagagagt ttttatcatg agcgatttcg caaaagtaga gcagtctttg
     3241 cgagaggaga tgacgcggat tgccagttca ttctttcagc gcggctatgc aaccggttcg
     3301 gctggcaatc tgtcgctgct tttacctgac gggaatttac tggcgacacc gacaggttca
     3361 tgcctgggca atctcgatcc gcagcggctt tccaaagtcg ccgcggatgg cgaatggtta
     3421 agtggtgaca aaccctcgaa agaggtgctc tttcatctgg cgctgtatcg caacaatccg
     3481 cgctgtaaag cggtggtgca tttgcacagc acatggtcga cggcgctttc ctgcctgcaa
     3541 gggctggaca gcagcaacgt tattcgtccg ttcacaccat acgtggtgat gcggatggga
     3601 aatgtcccgc tggtgcccta ttaccgaccg ggcgataaac gcatcgcaca ggatctggcg
     3661 gaactggcag cagacaatca ggctttttta ctggcaaatc atggcccagt ggtttgcggt
     3721 gaaagcctgc aagaagccgc caacaatatg gaagagctgg aggaaacggc aaaactgatt
     3781 tttattctcg gtgaccgccc gatccgttat ctgaccgcag gtgaaattgc ggaattaagg
     3841 agttaatgca atgcctcgtt ttgcagctaa tttatccatg atgttcaccg aagtgccttt
     3901 tattgaacgc ttcgccgcag cgcgaaaagc cgggttcgat gctgtggaat ttctgtttcc
     3961 ctatgactac tccaccctgc aaatccaaaa gcaactggag caaaaccatc tgacactggc
     4021 gctgttcaat accgctcccg gagatattaa tgcgggggaa tggggattat ccgcccttcc
     4081 cggacgtgag cacgaagcac acgcagacat cgacctggca ctggaatatg cattggcgct
     4141 caattgtgaa caagtccatg tgatggcagg cgtcgtgccc gctggcgaag atgctgaacg
     4201 gtaccgggca gtatttatcg ataatctccg ctacgctgcc gaccgctttg caccacacgg
     4261 caagcgaata ttagttgaag cactcagccc cgacgttaag cctcattatc tcttctccag
     4321 ccagtatcag gcactggcta ttgttgaaga ggttgcgcga gataacgtgt ttattcaact
     4381 agatactttt catgcgcaaa aagtagatgg caacctgacg catttaatcc gcgactacgc
     4441 tgggaaatat gcgcacgtac aaattgccgg actacctgat cgacatgaac cggacgatgg
     4501 agaaatcaac tatccgtggc tgttccgcct gttcgatgag gtgggatatc agggctggat
     4561 cggttgtgaa tataaacctc gtggcctcac cgaagaaggg cttggctggt ttgacgcctg
     4621 gcgctaattc gttaaatccc taattacaac gtacccatac atccccccat ctacggatgg
     4681 ggtaggttaa ctataacttt cagacagggt ttcccatgtc cacaattaca ttgttataca
     4741 ttgcgttagc tggcgtaatc atgctgttgc tgctggtcat caaggcaaag gtacaaccat
     4801 tcgttgctct gctcctcgtc agcctgttag tcgcacttgc ggcgggtata ccggcgggcg
     4861 aagtgggtaa agtgatgatc gccgggatgg gcggtgtgct tggttccgtc actattatta
     4921 ttggtctggg cgctatgctg gggcgtatga tcgaacactc tggtggtgca gagtcactgg
     4981 ctaattattt cagtcgcaag ttaggtgaca aacgaactat cgctgcgctg actctggcag
     5041 cgttcttcct cggtattccc gtcttctttg atgtcagctt tattattctt gcgccaatca
     5101 tttacggttt tgccaaggtt gccaaaatat cgccactcaa atttggcctg cctgtcgctg
     5161 gaatcatgct aactgttcat gtggcagtac cgccgcatcc aggccctgtc gccacagcgg
     5221 ggttactcca cgcagacatc ggctggctaa ccatcatcgg tattgcgatt tctattcccg
     5281 tagggattgt tggctacttt gcagcgaaaa taatcaataa gcgccaatat gcgatgtcag
     5341 tagaagtact ggaacagatg caactggctc cggccagtga ggaaggcgcg acaaaattaa
     5401 gcgataaaat aaatccaccg ggcgtcgcgc tggtcacctc gctaattgtt attcctatcg
     5461 cgattatcat gacgggtacg gtttccgcaa cactgatgcc gccttcgcat cccctgcttg
     5521 gtacgctaca gctgatcggc tcaccaatgg tagctctaat gattgcgctg gtgctggcat
     5581 tctggttatt ggctttacgt cgcggctgga gcttacaaca caccagcgac attatgggct
     5641 cagcccttcc cactgcggcg gtagtgattt tggttactgg tgctggaggg gtatttggca
     5701 aagtgctggt ggaatcgggc gtcggcaaag cccttgccaa tatgctacaa atgattgacc
     5761 tgcctctgtt accagccgca tttattattt cactggctct gcgtgcatcg caggggtcag
     5821 caaccgtagc aatcctgaca accggcgggt tactctcaga agcggtgatg ggattgaatc
     5881 cgattcagtg cgtattggtg acgctggcag cctgctttgg tgggcttggc gcgtcacata
     5941 ttaatgactc agggttctgg attgtgacca aatatctggg gttgtcggta gcagacggtc
     6001 tgaaaacctg gacagtgtta acgaccattc tcggttttac cggattctta attacctggt
     6061 gcgtatgggc ggtaatttga ccttaataaa aaggtccgat gggcatcgga ccttttattg
     6121 tgcacagaaa aggccagcct cgcttgagac tggcctttct gacagatgct tacttactcg
     6181 cggaacagcg cttcgatatt cagcccctgc gtttgcagga tttcacgcaa acggcgcagg
     6241 ccttcaacct gaatctggcg aacacgttca cgggtgaggc caatttcacg acctacatct
     6301 tccagtgttg ccgcttcgta ccccagcaaa ccgaatcgac gtgccagcac ttcacgctgt
     6361 ttggcgttca gctcgaacag ccatttgacg atgctctgct tcatatcgtc atcttgcgtg
     6421 gtatcttccg gaccgttctc tttttcatcg gccaggatgt ccagcaacgc tttttcggaa
     6481 tcaccaccca gcggggtgtc taccgaggta atgcgctcgt taagacgaag catacggctg
     6541 acgtcatcaa ctggcttatc cagttgctct gcgatctctt ccgcacttgg ttcatggtcc
     6601 agcttatggg acaactcacg tgcggttcgc aggtaaacgt tcagctcctt tacgatgtga
     6661 atcggcaaac gaatagtacg ggtttggttc ataatcgccc gttcaatcgt ctggcgaatc
     6721 caccaggttg cgtatgttga gaagcggaaa ccacgttccg ggtcaaactt ctctaccgcg
     6781 cggatcagcc ccaggttgcc ctcttcgata aggtccagca acgccagacc acgattgcca
     6841 taacggcggg caatttttac caccagacgc aagttactct cgatcatccg gcggcgagag
     6901 gcgacatctc cacgcagtgc gcgacgcgca aaataaactt cttcttcggc cgttaacagt
     6961 ggtgaataac caatctcacc aaggtaaagc tgagtcgcgt ccaacacacg ctgtgtggct
     7021 ccctgcgata acagttcctc ttcggccaaa tcgttatcac tgggttcctc ttctactaag
     7081 gccttttcgt caaaaacctc aactccgttc tcatcaaatt ccgcatcttc atttaaatca
     7141 tgaactttca gcgtattctg actcataagg tggctcctac ccgtgatccc ttgacggaac
     7201 attcaagcaa aagcctggtt ccgccgattt atcgctgcgg caaataacgc agcgggttta
     7261 cggatttccc cttgtaacga atttcaaaat gcaagcgtgt tgaactggtt ccggtgctac
     7321 ccatggttgc tattttttgc cccgccttca cttcttgttg ttcccggacc agcattgtgt
     7381 cgttatgggc gtaggcactc aggtaatcat cattatgttt gatgataatc agattaccgt
     7441 agccgcgcag cgcgttaccg gcataaacaa cgcggccatc tgcggtcgcg ataattgcct
     7501 gtcctttgct gcctgcgata tcaatcccct tgttgccccc ctcagaagcg ccaaaggttt
     7561 cgatcacttt gccctcagtc ggccagcgcc aggtggagat aggcgtactg gttgatgtac
     7621 tgctgacagt tggctcggtt gtgcttgctg ttggtaccgt tacaggcgct gtgaccgtgg
     7681 tcgcagctgg cttgttgttc ggcaacattt tgttagcact ctgttcaccc gaagattcag
     7741 aatacgtaat tgtcggttgc gacgcaacag caacggtgga attttgtgca ggcttgatca
     7801 caactccttg ctctgctgcg tcggcctggg taatggcatt tccgccagtg attggcgtac
     7861 cggaagcatt acccacctgc aaggtctgac caacgttcag cgcgtatggt gcctgaatat
     7921 tgttgcgctg agcaaggtca cggaaatcgt tgccagtaat ccaggcgata tagaaaagtg
     7981 tgtcgccttt tttcacggta taggtactgc cgctataact gcctttcgga atgttcccat
     8041 actgacggtt atagacgatg cgtccgtttt ccatctgtac cggctgctga gctactggct
     8101 gcactggctg gatttgcggt tgctgggctg tagacgtcgt ccccattttc ggcggcggcg
     8161 taatcaacat accagaattg gtatttgcag gcgcattgcc attaacggag ctgaccggtg
     8221 ccggtggatt tgaagtgtca gaacagcctg ccagccatag cgaaaccagt gacaaagccg
     8281 caatgcggcg aacggtgaat tttgggcttc ccgcgctcat ttatccccca ggaaaaattg
     8341 gttaataacc agtgacataa ttaccgtgca aggcacccta ctgaacactg gaaaagatgt
     8401 tcacgatacg ctgacctgcg gcaaaataac caggaaaaat ccaggtattt cctcacgttt
     8461 taagccagct cccccttcac taaagggaca aagcgcacgg cctccacggt atcgataata
     8521 aattcgcctc cccgacgacg cacccgtttc aaatactggt gctcctcccc tacgggtaag
     8581 acgagaatcc cgccttcgtc cagctgcgtc attagcgcag ttggaatttc cggcggtgcc
     8641 gccgtaacaa tgatagcgtc aaacggcgcg cgtgcctgcc aaccttgcca tccatcgcca
     8701 tgacgggttg aaacattatg taaatcaaga tttttcaggc ggcgacgcgc ctgccactgc
     8761 aaacctttta tccgttcgac cgagcaaaca tgctggacaa gatgcgccag gattgccgtt
     8821 tgatatcccg aaccggtgcc aatttccagc acccgcgact gcggcgtcag ctcgagtaat
     8881 tcggtcattc gcgctaccat atacggctgc gaaattgtct gcccctgacc tatcggcaag
     8941 gcgatattgt cccaggcttt ttgttcaaac gcttcatcaa cgaatttttc acgcggcacg
     9001 gcagcaagtg cattcagcac ctgctcatcc tgaatacctt gcgcacgtaa ttgatccaga
     9061 agtgcttgta cgcgtctgct taccattgcg tgccaactcc cacgctgttt aaccagtctg
     9121 aaaccacatc ttgcgcgcta tgcgcagtta aatccacatg cagcggcgtg atggagacat
     9181 agccctcatc taccgcagca aaatcggtcc ccggaccggc atcacattta ccgcccggcg
     9241 ggccaatcca gtacagcgta ttgccgcgcg gatcttgctg cgggatcacc tgatctgccg
     9301 gatgtcgtgt accgcagcgc gtcacgcgaa tacctttgat ttgatccaag ggtaaatccg
     9361 gaacgttaat attaagaata cgtccggtgc gcagcggctc tttacacagt gcgcgcaaaa
     9421 ttgaacaggt taccgccgcg gcagtgtcgt aatgtttatg cccgtcaagc gagacggcca
     9481 gcgccggaaa acctaaatga cggccttcca tcgcggcggc taccgtaccg gaataaataa
     9541 cgtcatcccc cagattcggc ccggcgttaa tgccggacac aacaatgtcc gggcgcggac
     9601 gcatcagagc attcacgcca agatagacgc aatcggtcgg ggttcccatt tgcacagcaa
     9661 tatcaccatt ttcaaaggta aacgtgcgca gggaggattc cagtgtcaga gaatttgaag
     9721 cgccgctgcg gttacgatcg ggggcgacca cctgaacgtc agcaaactca cgcaaggctt
     9781 tcgccagcgt ttgtataccg ggtgcatgta ccccgtcatc attactcagc aatatgcgca
     9841 taatcacctg ttgtgttgat aagttccctg acaacgctgg ttgcaaaact acccgccgga
     9901 agccagaaac ggatctctac ggtgacgtca tcccaccaat tccagcttaa ttgttgcgga
     9961 tacagcagca tcgctctgcg cgcggcttca actttttcgc gcaccagtaa agcttgtaat
    10021 tcagtttctg cggcgacagc tgcttgttcg aatgccagcg cttcacgctg agttccccat
    10081 tcgccactgc ccggcaatgc ggcggttatc atcagctctt tatcgttgac gcgatgctgt
    10141 aattccgcca gttcttcggt ggttgctaca aaccagctac cacgtccggc taattgtagc
    10201 gcatcgccgt caacaacttg attaacgtct gcttttttga ggcgctcagc aacaatctga
    10261 ttaaacaacg cactgcgggc tgccgacaac caaaaactcc gtttattgcg atcgcgcacc
    10321 ggagtattgg tttgcgccca gcgcagcgcg ccctgcaagt tgctaccgcc aatcccaaaa
    10381 cgttgggcac cgaagtagtt cggtacacct tttacgcaaa tatcgatcag acgttgttca
    10441 acgtcatcgc gattgctcac ttcgcgcaga accagggtaa aggcgttacc tttcagcgcg
    10501 cctaaacgca gcttgcgctt gtgccgcgca tactccagca cctggcagcc ttccagttga
    10561 aaggcgctca gatcgggcat ttccttgcct ggcacgcgag cgcataacca ctgttccgta
    10621 acagcatgtt tgtctttttg cccagcgaag ctgacttcat gggcatgaat tttcaggaat
    10681 ttcgccagtg catccgccac aaaacgggta ttgcagccgt ttttgaggat tctaaccaga
    10741 atatgctcac cttcaccatc aggctcaaag cccaaatctt ccaccaccac aaagtcttcc
    10801 ggattggctt tcagcagccc ggtgccttgc ggtttaccgt ggaggtaagt gagattatca
    10861 aactcaatca ttttgttgcc ttaatgagta gcgccaccgc ttcacaggca atcccttccc
    10921 cacgtccggt aaatccaagt ttttccgtag tagtggcttt cacgttaaca tcatccatat
    10981 ggcagccgag atcttcggca ataaacacgc gcatttgtgg aatgtgcggc aacatcttcg
    11041 gtgcctgagc gatgatagtg acatcgacgt tgcccagggt ataacccttc gcctgaatac
    11101 gacgccaggc ttcgcgtagc agctcgcggc tgtcggcacc tttaaatgcc ggatcggtat
    11161 ccgggaacag cttgccgata tcccccagcg ccgccgcgcc aagcaatgca tcggtcaacg
    11221 catggagcgc cacgtcgcca tcagaatgcg ccagcaatcc tttttcgtaa ggaatgcgta
    11281 cgccaccaat gataattggg ccttcaccgc caaaggcatg tacgtcaaaa ccgtgtccaa
    11341 ttcgcattat gtattctcct gatggatggt tcgggtgagg taaaactcgg ccagtgccaa
    11401 atcttccggg cgcgtgactt taatgttatc cgcacggcct tcgaccaact gaggatggaa
    11461 tccgcaatat tccagcgccg aggcttcgtc ggtaatagtc gcgccttcat ttagagcgcg
    11521 cgtcagacag tcatgtaaca gctcacgagg gaaaaattgc ggcgtcagcg cgtgccataa
    11581 gccgttgcga tcaacggtat gagcaatggc atttttgccc ggttcggcac gtttcatcgt
    11641 atcgcgcact ggtgcggcta ggatccctcc cgtgcggctg gtttcgctca acgccaacaa
    11701 tcgcgcgagg tcatcctgat gcagacaagg acgagcggcg tcatgcacca atacccactg
    11761 cgcgtcgcca gcggctttca aacctgccag cacggaatcg gcacgctcat caccgccatc
    11821 tacaacggtg atttgcggat gattcgccag aggaagttgt gcaaaacggc tatcgccagg
    11881 acttatggca atgacgacac gtttcacccg gggatgcgcc agcagcgcat gcaccgagtg
    11941 ttcaagaatg gtttgattac cgattgagag atattgctta ggacattccg tttgcattcg
    12001 acggccaaat ccggccgccg gaaccacggc gcaaacatcc aaatgagtgg ttgccatgtt
    12061 aattcccggg ctgatttatc gattgttttg ccccgcagac tgtgcgcgct tcgacgcgtc
    12121 aggcaccaga cgataaaaag tttcgcccgg cttggtcatg ctgagttcat tacgcgcacg
    12181 ctcttcgagc gcctcctggc cgccattgag atcgtcaatt tcggcaaaaa gttgatcgtt
    12241 tcgcgcttta agtttcgcgt ttgtagcttg ctgtgccgcc acatcatcat tgacgcgggt
    12301 atagtcatgt ataccgttct taccgaacca cagcgaatac tgtagccaga ccagaatagc
    12361 cagcaacagc agcgttagtt tacccatcct gccccctgaa aaacggcatc atcatcccat
    12421 gcatccgaag acgactctac atcctctgtt ggggataccg cgacaacgcg ggcaaatgta
    12481 ccacatttgt ccattgttac gtatacccag ggcgtgcaga acataatctc attattagtt
    12541 acggtttgaa ttatgaacag aggagacaag aaagtacaaa ttagcccagt agccacataa
    12601 acagtgcgcc aaacataatg cctactgtca ccagggtgaa aacaatactg tagcgtagct
    12661 ttccgtccat caatgaatgc agcgcaatcc ccaccactac cgcgacaggc atcagtgcca
    12721 gaaagaaagg ccaggtgtag ataaagaaga acagcgtgtt agagccataa atcaacatcg
    12781 gcatcgccag cgcaaataac caggagataa aaccgaccac ggcaccaggc agtgaccatg
    12841 tggtttcttc atcctcagta aggctgtcgt tatttgttag tgtaatgtta tggctattac
    12901 gcatatttga tcctgttact ttgacgaacc gggcatggaa acccggtggt gtctcaggat
    12961 ctgataatat cgttctgtct caacagatct aataattgct gtaccaaatt tgttactaat
    13021 tgttcaccat tgagatgaat ttctgccgat tcaggcgctt cgtaaacgga atctattccc
    13081 gtaaagttgc gcagttcacc ggcacgcgct ttcttatata agcctttggg atcgcgggct
    13141 tcgcaaatcg ccagcggcgt atcgacaaac acttcgataa agcgcccttc tcctacgcgt
    13201 tcgcgaacca tctggcgttc ggcgcggtgt ggcgagataa atgcggtcag caccaccagt
    13261 ccggcttcaa ccatcaaatt cgccacttca ccgacgcgac ggatattctc tttacgatcg
    13321 gcatcgctaa aaccgagatc gctgcataat ccgtggcgaa cattgtcgcc atccagcaga
    13381 tacgtactga cgccgagttt atgtaacgcc tcctccagcg ccccggcgac cgttgattta
    13441 ccggacccag agaggccggt aaaccacagc actacaccac gatgacagtg gtgtagctcg
    13501 cgttgttgca cagtgaccgg atggctatgc cagacgacgt tttcgtcatg cagcgccatt
    13561 atttatcccc cagcaaatcg cgcgcgcccc agtgcggaaa gtggcgacga accagggcat
    13621 tcaattccag ttcgaatgca ctgaattcag atgacgcaac ggcggcctcg tttttcggct
    13681 catgcaccat accggcacca acagtcacgt tgctcaggcg atcgataaaa atcagcccac
    13741 ccgtcaccgg attttgttga taacgatcta acaccagcgg ctcgtcaaaa gtgagatcca
    13801 cgaggccgat cccattcagt ggcaggtttt caacttcacg ctgggtaagg ttattaatat
    13861 caacctgata gctaatgcca tcaacacgcg cgcgcgtctt cttaccggca attttgatgt
    13921 cgtaactctg gcccggggaa agcggctgtt ccgccatcca taccacatcc accgacgcgc
    13981 tctgcaccgc cggtaacgct tcgtctgccg ccagcagcag atcgccacgg ctgatgtcga
    14041 tctcatccgt cagcaccagg gtgatcgctt ctccggcaaa ggcttcttcg cgatcaccat
    14101 caaaagtcac tatccgcgcg acgtttgatt ccacaccaga gggcagcact ttgacacgtt
    14161 gcccgacttc cacgcgaccg gatgccagcg ttccggcgta gccacgaaaa tcgagattcg
    14221 ggcgattaac gtactgcacc gggaagcgca ttggctgggc atccaccact cgctggatct
    14281 ccacggtttc cagcacttcg agcagtgtcg gaccgctgta ccacgacata ctttcacttt
    14341 gcgatgccac gttgtcgcct tccagtgcag agagcggcac aaagcggata tccagattac
    14401 ccggcagctg cccggcaaag gtcaaataat cttcacgaat acgggtgaac gtctcttcac
    14461 tgtaatccac cagatccatt ttgttgatcg ccacgaccag atgtttgatc cccaacagtg
    14521 tggagataaa actgtgacga cgggtttgat cgagcacgcc tttacgggca tcgatcagta
    14581 agatcgccag ttcacatgtc gatgcgccag tcgccatatt gcgagtgtac tgctcgtgcc
    14641 ctggggtgtc ggcgataata aatttacgct tctcggtaga gaaataacgg taagccacgt
    14701 caatggtgat gccctgttcg cgctcagctt gcaggccgtc caccagcagt gccagatcca
    14761 gcttttcgcc ctgggtgccg tgacgcttac tgtcgttatg cagcgatgag agctgatctt
    14821 cgtagatttg gcgggtatcg tgcagcaggc gaccaatcag ggtacttttg ccgtcatcga
    14881 cgctaccaca ggtcagaaaa cgcagcaggc ttttatgttg ttgcgcaatc atccaggctt
    14941 cgacgccgcc ttcattggcg atttgttgtg caagtgcggt gttcatctta aaaatacccc
    15001 tgacgttttt tcagctccat agaccccgcc tggtcgcggt caatcacgcg gtcctgacgt
    15061 tcactggtgg tagaaaccag catctcttcg atgatctccg gcagtgtttg tgaatttgac
    15121 tccaccgcac cggtcagcgg ccagcagccc agcgtacgga aacgcaccat ccgtttttta
    15181 atcacttcgc ccggttgcag gtcgatacgg ttgtcatcaa tcatcatcaa cataccgtcg
    15241 cgttccagaa ccggacgttc cgcagcgaga tacagtggca caatgtcgat attttccagc
    15301 cagatgtatt gccagatatc ctgctcggtc cagttagaga gcgggaagac gcggatgctt
    15361 tcacctttgt taatttgccc gttgtagttg tgccacagct ccgggcgctg atttttcgga
    15421 tcccagcgat ggaagcggtc acggaaagag tagattcgct ctttagcgcg ggatttctct
    15481 tcatcacggc gcgcaccacc gaaggcggca tcaaaaccgt atttgttcag cgcctgcttc
    15541 aggccttcag ttttcataat atcggtatgt ttcgcgctgc cgtgtacgaa tggattaatc
    15601 cccatcgcca cgccttccgg gtttttatgc accagcagct cgcagccgta ggctttagca
    15661 gtacgatcgc ggaactcata catctcgcgg aatttccagc cggtatcgac atgcagcaac
    15721 gggaaaggca gcgtacctgg ataaaacgcc ttgcgcgcca gatgcagcat gacgctggaa
    15781 tctttaccga tagagtagag catcaccgga tttgagaatt ctgccgccac ctcgcgaata
    15841 atgtggatgc tttccgcctc cagttgccgc aggtgagtaa gtcgtttttg agccataacc
    15901 gttcctttgc aataccgcta ttttcttgcc atcagatgtt tcgactatag ggagcgtaag
    15961 agaacgaatg aaattaccaa ttagaatgag tagttcctta acggaataac gatttggcaa
    16021 agctaatatc aaaaagtgct taaggcaccg gatttcgggc gtttaggaag atttgaaatt
    16081 gttttagcgc agcggcagtt tcatactatg gcggtaaaaa aatttgcatg gtatttaagg
    16141 actcactatg ttttccgcat tgcgccaccg taccgctgcc ctggcgctcg gcgtatgctt
    16201 tattctcccc gtacacgcct cgtcacctaa acctggcgat tttgctaata ctcaggcacg
    16261 acatattgct actttctttc cgggacgcat gaccggaact cctgcagaaa tgttatctgc
    16321 cgattatatt cgccaacagt ttcagcaaat gggttatcgc agtgatattc ggacatttaa
    16381 tagtcggtat atttataccg cccgcgataa tcgtaagagc tggcataacg tgacgggaag
    16441 tacggtgatt gccgctcatg aaggcaaagc gccgcagcag atcatcatta tggcgcatct
    16501 ggatacttac gccccgctga gcgatgctga cgccgatgcc aatctcggcg ggctgacgtt
    16561 acaaggaatg gatgataacg ccgcaggttt aggtgtcatg ctggaattgg cagaacgcct
    16621 gaaaaatacg cctaccgagt atggtattcg atttgtggcg accagcggcg aagaggaagg
    16681 gaaattaggc gctgagaatt tactcaagcg gatgagtgac accgaaaaga aaaatacgct
    16741 gctggtgatt aatctcgata acttaattgt tggcgataaa ttgtatttca acagcggtgt
    16801 aaaaacccct gaagcagtaa ggaaattaac gcgcgacagg gcgctggcaa ttgcgcgcag
    16861 tcacggaata gccgcaacga ccaatccggg gttgaataaa aattatccga aaggcactgg
    16921 gtgttgtaat gacgcagaaa tattcgacaa agcgggcatt gctgtacttt cggtggaagc
    16981 gactaactgg aatcttggga ataaggatgg ttatcagcaa cgcgcaaaaa cagccgcatt
    17041 ccctgcggga aatagctggc atgacgtaag actggataat caacagcata ttgataaggc
    17101 acttcctgga agaatagaac gtcgctgccg tgacgttatg cggataatgc taccgttggt
    17161 gaaggagctg gcgaaggcgt cttgatgggt ttgaaaatgg gagctgggag ttctaccgca
    17221 ggggcgggga attctaagtg atatccatta tcgcatccag tgcgcccggt ttatccccgc
    17281 tggcgcgggg aacacactaa gcatacataa ctgtttttaa acaaatttat tctgcatcaa
    17341 caatctacca actaaattaa aacatttcct tatttttaaa gaacggataa cttattgatt
    17401 atcaacagga agaaaagaaa ccaaacgtaa cccatccaaa tccaccggaa tacgtctgtt
    17461 ttctccccag gtctgaaatt caaaacccga ctcggtattg gtcgcccagg ccatcaccac
    17521 atttccgcaa ccagccagtt gggtaatttg ctgccagatc atctcccgaa tacgttttga
    17581 tgtatcacca acatacacac cggcacgcac ttccagtagc cagattgcga gccgtccacg
    17641 taagcgcggc gggacatttt ctgtaacaac cacgaccatg ctcatcagcc gcgtcctcga
    17701 tgaccgctat cgcccaacgt ttcaggttcg gggatggctg gcggtaacat atccggcgca
    17761 ggttgtggcg gttcaatttc acctgcggca aggacttcct caattaacgg tattaatttg
    17821 cccgttaact tagtgctacg gaaaatatca cgacaggcta atctgacttc tttatcaggt
    17881 tctgcgggtt gcctcgccgc tatttcaaat gcctttggta caaccgaatc aaatttaatg
    17941 atatcggcta tgtcataaac aaatgaaagc ggtttgccac tatggataaa cccaatagcg
    18001 ggcgcatatc ccgcggctaa tactgccgct tcagatatac cgtacagaca tgatgtagca
    18061 gcactgatgc agcgattcac aacatcgcct tttcccagtc tttaggatcg tatttgcgac
    18121 cattccattt cacaccatat tgtttcgcca gtaatgcata cgtctggcga acgcgagatc
    18181 cctcaattcc acgtagctgc tccactgaac ggcgagctgg cggtggctca cgaaaacgta
    18241 attcatacat tttgcgcacc accttcagac gtagatcttc cgttaaagcc agctttgcct
    18301 ggtagagtaa cttatcagca cgcgccccac cgggttgtcc ggaagagtag acgcgaacac
    18361 ccgcttcacc gacccagacc agtagcgtcc ccaccgtggc ggccagatgc accgccgcgt
    18421 gggaaactct cgttcccggt tcgagcataa tgcaggcgac cgatcccacc ggaatgtgcg
    18481 tgcggatccc ggttttatcg atcagcacga aagcgccgtc cagtacgtcg atttgcccgt
    18541 actggaggaa gatcatagag gtgcgatctt ttaacgggat cgggctcagc ggtacaaacg
    18601 tcacgcctct gctccgggtt tgatcagcat cagaccacag ccgaacgcgc ggcttttgcc
    18661 atacccctga ctgagacgtt gcagaaataa cccgggatcg gtgaccgtaa gcatccccgt
    18721 ataatccacg ctactgaact ggatcagttg ccgggagttt tcccgccgca gttgctgttg
    18781 tcggtaggca tcaaccgagg tatccagcag tgtaaaacca cttctctccc cctgggctgc
    18841 cagccagtcc agcgccgcct gttgttgatg caaccagaca tcacttcctt ccgcctgccc
    18901 cctcacctgc cgtttcgcct ccatcagcag atcgtggcgc ttgcccgctt tacagattgt
    18961 tggattcgcc cgcaggttga aacaaagttg ttgtccggta cacagctcgg gcgcaaatga
    19021 ccggcattct atggtgaacg tatcactttc cgccgggcgt tcctgcgaca gtacaaaaaa
    19081 gcgaaacgcg ccctggagtt cttcccgacg ataaagaaat tgcctttctt tgccgctagg
    19141 gaagagatcc cacagccact gatgcatcac atattcaccg cgatccacca gatgcagcaa
    19201 ctgcgcaggc gaaagctggc cggtatgtaa ggttattctt gagaggtaca tggttcctcc
    19261 ttgctgagcc acggcccctg attgacggtg cgttccccaa acagccactg ctgacgattt
    19321 aaaggaacat cccggcggcg taatattttg ctcgcgacta ggccgtcgtg tttcccttcc
    19381 caccagcatt catcctgaag tttcgggagt gaaactttca gtttatggaa atgatcctga
    19441 tactgttggt atgcattaca taaggcatca cacgcgttgc cttcgagcag taacggcgca
    19501 agaggtaatg ccagcggatg actttttcgc cccagataaa gcggaaaaac tggatggcgt
    19561 aaaccgtcct gcaactgttc gaggctgtaa ggcgcatcgg ctgttgttgc caccgccacc
    19621 atccaccagg catcggtgta gtagtcgcgc cgggagataa tcgcgctcaa aagctcaggg
    19681 tcgctcaact cttcgcgacg gctgaaataa cgtgctttac gcacctcttt tggcatctgg
    19741 accgtgtgat aatcccgtgc ccagcgcggg ttacggctgg cgcaaaccac cagtgaatag
    19801 tggcgattaa acgcgtttag gcgttcggta tcatcacgcc ggatccctac cccggcagcc
    19861 agcagcccca gcaatgctga gcgcgaag
//
LOCUS       DADMHM010000061        19883 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.062, whole genome shotgun sequence.
ACCESSION   DADMHM010000061 DADMHM010000000
VERSION     DADMHM010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19883)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19883)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19883
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.062"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(34..381)
                     /locus_tag="JN125_001918"
     CDS             complement(34..381)
                     /locus_tag="JN125_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH nuclease family protein"
                     /protein_id="HAY8871715.1"
                     /translation="MAIIPKNYARLESGYREKALKIYPWVCGRCSREFVYSNLRELTV
                     HHIDHDHTNNPEDGSNWELLCLYCHDHEHSKYTEADQYGTTVIAGEDAQKDVGEAKYN
                     PFADLKAMMNKTK"
     gene            complement(510..1481)
                     /gene="secF"
                     /locus_tag="JN125_001919"
     CDS             complement(510..1481)
                     /gene="secF"
                     /locus_tag="JN125_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HAY8871716.1"
                     /translation="MAQEYTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVR
                     GFNWGLDFTGGTVIEITLEKPAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAE
                     GETGGQVLGSQVLKVINESTNQNAAVKRIEFVGPSVGADLAQTGAMALMAALLSILVY
                     VGFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVS
                     DRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSGTTLMVILMLYLFGGPVLEGFSLT
                     MLIGVSIGTASSIYVASALALKLGMKREHMLQQKVEKEGADQPSILP"
     gene            complement(1492..3339)
                     /gene="secD"
                     /locus_tag="JN125_001920"
     CDS             complement(1492..3339)
                     /gene="secD"
                     /locus_tag="JN125_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HAY8871717.1"
                     /translation="MLNRYPLWKYVMLIVVIVIGLLYALPNLFGEDPAVQITGARGVA
                     ASEQTLIQVQKTLQEEKITAKSVALEEGAILARFDSTDTQLRAREALMGVMGDKYVVA
                     LNLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLRE
                     KGIPYTTVRKENNYGLSITFRDAKARDEAIAYLSKRHPDLVISSQGSNQLRAVMSDAR
                     LSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGAT
                     ATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSSQD
                     EYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEV
                     INIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNI
                     EQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIA
                     GIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVII
                     LYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI"
     gene            complement(3367..3699)
                     /gene="yajC"
                     /locus_tag="JN125_001921"
     CDS             complement(3367..3699)
                     /gene="yajC"
                     /locus_tag="JN125_001921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000007628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HAY8871718.1"
                     /translation="MSFFISDAVAATGAPVQGSPMSLILMLVVFGLIFYFMILRPQQK
                     RTKEHKKLMDSIAKGDEVLTNGGLVGRVTKVAENGYIAIALNDTTEVVIKRDFVAAVL
                     PKGTMKAL"
     gene            complement(3722..4849)
                     /gene="tgt"
                     /locus_tag="JN125_001922"
     CDS             complement(3722..4849)
                     /gene="tgt"
                     /locus_tag="JN125_001922"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HAY8871719.1"
                     /translation="MKFELDTTDGRARRGRLVFDRGVVETPCFMPVGTYGTVKGMTPE
                     EVEATGAQIILGNTFHLWLRPGQEIMKLHGDLHDFMQWKGPILTDSGGFQVFSLGDIR
                     KITEQGVHFRNPINGDPIFLDPEKSMEIQYDLGSDIVMIFDECTPYPADWDYAKRSME
                     MSLRWAKRSRERFDSLGNKNALFGIIQGSVYEDLRDISVKGLVDIGFDGYAVGGLAVG
                     EPKADMHRILEHVCPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGH
                     LFVTDGVVKIRNAKYKSDTGPLDPECDCYTCRNYSRAYLHHLDRCNEILGARLNTIHN
                     LRYYQRLMAGLRKAIEEGKLESFVTDFYQRQGREVPPLNVD"
     gene            complement(4905..5975)
                     /gene="queA"
                     /locus_tag="JN125_001923"
     CDS             complement(4905..5975)
                     /gene="queA"
                     /locus_tag="JN125_001923"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HAY8871720.1"
                     /translation="MRVTDFSFELPESLIAHYPMPERSSCRLLSLDGPTGALTHGTFT
                     DLLDKLNPGDLLVFNNTRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPK
                     PGAELLLGDDESINATMTARHGALFEVEFNDDRSVLDILNSIGHMPLPPYIDRPDEDA
                     DRELYQTVYSEKPGAVAAPTAGLHFDEPLLEKLRAKGVEMAFVTLHVGAGTFQPVRVD
                     TIEDHIMHSEYAEVPQDMVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKNDLIEPF
                     FDDTQIFIYPGFQYKVVDALVTNFHLPESTLIMLVSAFAGYQHTMNAYKAAVEEKYRF
                     FSYGDAMFITYNPQAINERVGE"
     gene            6068..6649
                     /gene="acpH"
                     /locus_tag="JN125_001924"
     CDS             6068..6649
                     /gene="acpH"
                     /locus_tag="JN125_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP phosphodiesterase"
                     /protein_id="HAY8871721.1"
                     /translation="MNFLAHLHLAHLAESSLSGNLLADFVRGNPEESFPPDVVAGIHM
                     HRRIDVLTDNLPEVREAREWFRRETRRVAPITLDVMWDHFLSRHWSQLSPDFPLQEFI
                     CYARKQVMTILPDSPPRFINLNNYLWSEQWLVRYRDMDFIQNVLNGMASRRPRLDALR
                     DSWYDLNAHYTALETRFWQFYPRMMAQASHKAL"
     gene            complement(6654..8376)
                     /gene="malZ"
                     /locus_tag="JN125_001925"
                     /pseudo
     CDS             complement(6654..8376)
                     /gene="malZ"
                     /locus_tag="JN125_001925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706291.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="maltodextrin glucosidase"
     gene            complement(8532..9905)
                     /gene="proY"
                     /locus_tag="JN125_001926"
     CDS             complement(8532..9905)
                     /gene="proY"
                     /locus_tag="JN125_001926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline-specific permease ProY"
                     /protein_id="HAY8871722.1"
                     /translation="MESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSV
                     LLAYIIGGIAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIV
                     AIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATI
                     IIMIVAGFGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEII
                     GITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTAGSPFVLTFQH
                     MGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVT
                     VLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVK
                     ALKFKVPGGVATTIGGLIFLLFIIGLIGYHPDTRISLYVGFAWIVVLLIGWMFKRRHD
                     RQLAENQ"
     gene            complement(9981..11300)
                     /gene="brnQ"
                     /locus_tag="JN125_001927"
     CDS             complement(9981..11300)
                     /gene="brnQ"
                     /locus_tag="JN125_001927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transporter carrier
                     protein BrnQ"
                     /protein_id="HAY8871723.1"
                     /translation="MTHQLRSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTA
                     AFGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFATPRT
                     ATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALV
                     ILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGV
                     TEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFG
                     GGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVSNLGLS
                     QLIQISVPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAPPMFISLLFGILDGIKASAF
                     SDILPSWAQRLPLAEQGLAWLMPTVVMVVLAIIWDRAAGRQVTSSAH"
     gene            complement(11707..13002)
                     /gene="phoR"
                     /locus_tag="JN125_001928"
     CDS             complement(11707..13002)
                     /gene="phoR"
                     /locus_tag="JN125_001928"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate regulon sensor histidine kinase PhoR"
                     /protein_id="HAY8871724.1"
                     /translation="MLEWLSWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLI
                     WHFWNLLRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRS
                     GAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRD
                     FSRPLNLVLNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTP
                     LTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNE
                     KVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYNAVNHTP
                     EGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLA
                     IVKHAVNHHESRLNIESTVGKGTRFSFVIPERLIAKNSD"
     gene            complement(13060..13749)
                     /gene="phoB"
                     /locus_tag="JN125_001929"
     CDS             complement(13060..13749)
                     /gene="phoB"
                     /locus_tag="JN125_001929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000113934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate response regulator transcription
                     factor PhoB"
                     /protein_id="HAY8871725.1"
                     /translation="MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE
                     PWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDY
                     ITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEF
                     KLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTV
                     RGTGYRFSTRF"
     gene            13939..15141
                     /gene="sbcD"
                     /locus_tag="JN125_001930"
     CDS             13939..15141
                     /gene="sbcD"
                     /locus_tag="JN125_001930"
                     /EC_number="3.1.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease subunit SbcD"
                     /protein_id="HAY8871726.1"
                     /translation="MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAII
                     VAGDVFDTGSPPSYARTLYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDIMAFLNT
                     TVVASAGHAPQILPRRDGTPGAVLCSIPFLRPRDIISSQAGLNGIEKQQHLLAAITDY
                     YQQHYADACKLRGDQPLPIIATGHLTTVGASKSDAVRDIYIGTLDAFPAQNFPPADYI
                     ALGHIHRAQIIGGMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVT
                     QPMAVLKGDLASITAQLEQWRDVSQEPPVWLDIEITTDEYLHDIQRKIQALTESLPVE
                     VLLVRRSHEQRERVLASQQRETLSELSVEEVFNRRLALEELDESQQQRLQHLFTTTLH
                     TLAGEHEA"
     gene            15138..18281
                     /gene="sbcC"
                     /locus_tag="JN125_001931"
     CDS             15138..18281
                     /gene="sbcC"
                     /locus_tag="JN125_001931"
                     /EC_number="3.1.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308474.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease subunit SbcC"
                     /protein_id="HAY8871727.1"
                     /translation="MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKT
                     TLLDAICLALYHETPRLSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRAR
                     NQPDGNLQVPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAA
                     FLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVALLTPEQV
                     QSLTASLQVLTDEEKQLLTAQQQEQQSLNWLTRLDELQQEASRRQQALQQALAEEEKA
                     QPQLAALSLAQPARNLRPHWERIAEHSAALAHTRQQIEEVNTRLQSTMALRASIRHHA
                     AKQSAELQQQQQSLNTWLQEHDRFRQWNNELAGWRAQFSQQTSDREHLRQWQQQLTHA
                     EQKLNALAAITLTLTADEVATALAQHAEQRPLRQRLVALHGQIVPQQKRLAQLMVTIQ
                     NGSLEQTQRNVALNEMRQRYKEKTQQLADVKTICEQEARIKTLEAQRAQLQAGQPCPL
                     CGSTSHPAVEAYQALEPGVNQSRLLALENEVKKLGEEGAALRGQLDALTKQLQRDENE
                     AQSLRQDEQALTQQWQAVTASLNITLQPQDDIQPWLDAQDEHERQLRLLSQRHELQGQ
                     IAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEESWLATRQQEAQSWQQRQN
                     ELTALQNRIQQLTPILETLPQSDDLPHSEETVALDNWRQVHEQCLALHSQQQTLQQQD
                     VLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRSQAQT
                     LVTQTAETLAQHQQHRPDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQDA
                     DNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQGLTLDNLVHLANQQL
                     TRLHGRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSH
                     KTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVK
                     KINGLGYSKLESTFAVK"
     gene            18407..19591
                     /gene="araJ"
                     /locus_tag="JN125_001932"
     CDS             18407..19591
                     /gene="araJ"
                     /locus_tag="JN125_001932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414930.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter AraJ"
                     /protein_id="HAY8871728.1"
                     /translation="MKKVILSLALGTFGLGMAEFGIMGVLTELAHNVGISIPAAGHMI
                     SYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSG
                     FPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTF
                     LLIAVFNIAVMASVYFWVPDIRDEAKGKLREQFHFLRSPAPWLIFAATMFGNAGVFAW
                     FSYVKPYMMFISGFSETAMTFIMMLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIV
                     LALLMLFFCGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFN
                     LGSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQAADTPVLAKP
                     LG"
     gene            complement(19734..>19883)
                     /locus_tag="JN125_001933"
     CDS             complement(19734..>19883)
                     /locus_tag="JN125_001933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308471.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HAY8871729.1"
                     /translation="MSNVDRLYQTVPQLIKQFVFGGECETPVRKAKHGDSSGVRGAAW
                     LWPQE"
BASE COUNT         4989 a         5422 c         5006 g         4466 t
ORIGIN      
        1 aagcgtagcg catcaggcaa ttttacgttt taatcacttc gtcttgttca tcatcgcttt
       61 caggtcagcg aatgggttgt acttcgcttc accgacatct ttctgcgcat cttcccctgc
      121 gataacggtc gtaccatact gatccgcttc ggtatatttc gaatgctcat gatcgtggca
      181 atagagacaa agcaattccc agttactgcc atcttccggg ttattggtat ggtcgtgatc
      241 aatgtggtga acggtaagtt cacgcaggtt ggaataaaca aactcgcggg aacagcgacc
      301 gcagacccac ggatatattt ttaatgcttt ttcgcgatag ccgctttcta accgcgcata
      361 gttttttggg atgatagcca tgaagagtta cctggatgaa atgtagggtt acgcgcagtt
      421 tcccaagatg cggggatttt cgcaatctcc atacatcaaa aaaaatcccg atcttctgac
      481 cgggattttc aacatcaacg ggaacttgat tacggcagaa ttgacggctg atccgcccct
      541 tctttttcca ctttctgctg caacatgtgt tcgcgcttca tacccagttt cagagccaac
      601 gcagatgcca catagatgga agatgcagta ccgatggaaa caccgataag catggtcagc
      661 gagaagcctt ccagtaccgg accaccgaag aggtacagca tcaggataac catcaaggta
      721 gtaccggatg tgatcaaggt acggtgcagc gtctgggtca aggacacgtt aaagatttcg
      781 taaggcgtac cgcgacggat cttgcggaag ttttcacgaa tacggtccga taccacgata
      841 ctgtcgttaa gcgagtaacc gataaccgac atcaacgatg ccacaatggt caggtcaatc
      901 tcgatatgga ataacgacaa aatacccagc gtaatgataa cgtcgtgcgc cagcgcaata
      961 acaacccctg ccgccagtcg ccactcaaag cgaaaaccta cgtacacaag gatagacagc
     1021 agcgccgcca tcaacgccat cgcaccggtt tgcgcaaggt ctgcccccac gctcggaccg
     1081 acgaactcaa tacgcttcac tgctgcattc tgattggtgg attcgttaat caccttcaga
     1141 acctggctgc ccagcacctg accgccggtt tcgccttcag caggcggcat acggaccatg
     1201 atgtcgtggc tgctaccaaa gttttgcagc attggctctt caaaaccggc tttttgcaat
     1261 gcatcacgca ttacgtcaat ttcagccggt ttttcgagcg taatttcgat aaccgtacca
     1321 ccggtgaaat ccagccccca gttaaagccg cgcacgccca taataacgat agcggcgatt
     1381 aacagcagac cagagatgcc gaaagcccag tagtcccagc gcataaagtc atagacttta
     1441 cggccgtggt ttagttgttc aacagtatat tcctgtgcca catcgcactc ctcagattga
     1501 cagcttcttg acgcgcttgc cgccatatag caggtttacg atggcacgcg taccgacaat
     1561 cgcggtaaac atcgacgtcg ccacaccgat accggtagta atcgcgaacc ctttaattgc
     1621 cccggtaccc actgcgtaca ggatgatgac tttaatcagc gtggtgatgt tcgcatcgaa
     1681 gatagaactg aatgcgccac gataaccttc atcaattgcc tgttgaacag tacgtccgtt
     1741 gctcaactct tctttaatac gttcgttgat cagtacgttc gcatcgaccg ccaccgcaag
     1801 ggttaagacg atacccgcga tacctggcat actcagcgtt gcgcctggca acagcgacat
     1861 aatgccgacg attaagatca agttggcaat cagagcactg gtcgcaatca gaccaaactt
     1921 cttatagaag atgatcatga acagaataga aaccagcaga ccggcaaggc aagcctccag
     1981 cccctgttca atgttctgca tacccagggt tgggccaatg gtacgttctt caacaatctg
     2041 aatcggcgcg atcaacgcac cggcacgcag cagcagtgac agctgacggg cttcgttcgg
     2101 gttgttgatg ccggtgatac ggaagctgtt acccagacga gactggatgt tggcgatgtt
     2161 aatcacctct tcctgtttca ccagaaccgc acgaccattt gcatctttct taccgctgtc
     2221 tttgtactcc acaaacaggg ttgccatcgg tttgccgatg ttgtccttag tgaagttaga
     2281 catgatgtta ccaccagcgc tatcgagcga gatgttaacc tgcggttggt tgtattcgtc
     2341 ctggctggaa gtggagtcgg tgatatggtc accggtcaga attacgcgtt tgtacagcac
     2401 aactggctga ccttcgcggg tctgtttcac ttcagagtcg cccggtacgc gaccggatgc
     2461 cgcagcggcc tggtcaacgt tggtgtttac cagacggaat tccagcgttg ccgtcgcacc
     2521 cagaatctct ttcgcacgcg cagtgtcctg aatacctggc agttcaacaa cgatacggtc
     2581 agcaccctga cgctgaacca ccggctccgc tacgccaagt tggtttacac ggttacgcag
     2641 gatattgatg ttctgctgca ccgcatattc acgcgcttca ctcagacgag catcgctcat
     2701 taccgcacgc agctggttgc tgccctggct actaatcacc aagtccggat ggcgcttgct
     2761 cagatacgca atggcttcat cacgagcttt agcatcgcgg aaagtaatgc tcaggccgta
     2821 gttgttttct ttacgaacgg tggtatacgg gatgcccttt tcacgcagat cgctgcgcag
     2881 gctatcgata ttttgttcct ggagtttgcc aagcgcggtg tccatatcca cttccatcag
     2941 gaagtgaacg ccgccacgca ggtcaaggcc gagcttcatc ggctcagcgt gaatagctgc
     3001 cagccagcgc ggcgttgccg gggcaaggtt aagcgccacg acgtatttgt cacccataac
     3061 gcccattaat gcttcacgag cgcgcagctg ggtgtcagtg gagtcgaagc gcgcaagaat
     3121 agcgccctct tccagtgcca cagacttagc agttattttt tcttcttgta acgttttctg
     3181 gacctggatc agcgtttgct cactggcggc gactccgcgc gcaccagtga tctgaacagc
     3241 cggatcctca ccaaacaggt tgggaagcgc atacagcaga ccgatgacaa tcaccacgat
     3301 cagcatgacg tacttccaca aaggataacg gtttaacacg gcaattccct tagggaaaaa
     3361 ttttaattac agcgccttca tggtgccttt cggcaggacg gcagctacga agtcacgttt
     3421 aataactact tcagtggtgt cattcagcgc gatagcaatg tagccgtttt ccgctacttt
     3481 ggttacgcga ccaaccaggc caccgttcgt cagaacttca tcacctttgg caatggagtc
     3541 catcagcttt ttgtgttctt tggtgcgctt ctgctgtgga cgcaggatca tgaaatagaa
     3601 aatcagaccg aataccacca gcatcaaaat caaagacatc gggctacctt gcaccggtgc
     3661 acccgttgcc gctaccgcat cagaaataaa aaagctcatt aaatttccct cattattaat
     3721 attaatcaac gttcaaaggt ggtacttctc gcccctgacg ctggtaaaaa tcagttacga
     3781 agctctctaa tttaccctct tcaatagcct tgcgtaaacc cgccatcaaa cgctggtagt
     3841 aacgaaggtt atgaatggtg ttgagtcgcg cgcctaatat ttcgttgcaa cggtcaagat
     3901 gatgcaagta agcgcgtgaa taattgcgac aggtgtagca atcacactca ggatcgagtg
     3961 ggccagtatc gctcttatac ttcgcattgc ggattttcac cacgccatcg gtcacgaaca
     4021 aatgaccatt tcgggcgttg cgggttggca ttacgcagtc aaacatatcg ataccacgac
     4081 gtacgccttc aaccaggtct tctggtttac caacgcccat caggtaacgc ggtttgtctg
     4141 ccggaatttg cgggcataca tgctccagaa tgcggtgcat atctgctttc ggctcaccca
     4201 cagccagacc gccgacagcg tagccatcaa aaccgatatc taccagacct ttaacagaaa
     4261 tatcacgtaa atcttcgtaa acgctgccct gaatgatacc aaacagcgca tttttgtttc
     4321 cgagactgtc aaaacgctca cggctacgct tcgcccaacg cagagacatc tccatggagc
     4381 gttttgcgta atcccagtca gcaggatacg gcgtacactc atcaaagatc atgacgatat
     4441 ccgaaccaag atcgtactga atctccattg atttttcagg atcgaggaaa atcggatcgc
     4501 cgttgatcgg gttacggaag tgcacgccct gttcggtgat tttacgaata tcgccaaggc
     4561 tgaagacctg gaagccgccg gagtcggtga ggatcggccc cttccactgc ataaaatcgt
     4621 gcagatcgcc gtgcagtttc atgatttcct ggcccgggcg cagccacagg tggaaggtgt
     4681 tgccgaggat aatttgcgcg ccagtggctt caacttcttc cggcgtcatc ccttttacgg
     4741 tgccgtaggt gccaacaggc ataaaacaag gcgtttccac tacgccacga tcaaagacca
     4801 ggcggccacg gcgtgcgcga ccgtcggtgg tgtccagttc aaatttcatt ttttctccac
     4861 tacgtcagaa aaacagtcca acgttttaaa ccagcgccgc ggaattactc cccgacgcgc
     4921 tcattaattg cctgcggatt gtacgtaata aacatcgcat caccgtaact aaaaaagcga
     4981 tatttctctt ctaccgctgc tttataggcg ttcatggtgt gttgataacc ggcaaaggcc
     5041 gaaaccagca taatcagcgt cgactctggc aagtggaagt tcgtcaccag cgcatcgacc
     5101 actttgtact ggaagcccgg atagataaag atttgggtat cgtcgaagaa cggttcaatg
     5161 agatcgtttt tcgctgcctg agccgcgctt tccagcgaac gtactgaagt ggtgccaacc
     5221 gcaatcaccc ggttaccgcg cgctttcgcc gccagtaccg cgtctaccat atcctgcggt
     5281 acttcagcgt attccgagtg catgatgtga tcttcaatgg tgtcgacgcg caccggctgg
     5341 aaggtgcccg caccaacgtg caacgtcaca aacgccatct ccacgccttt ggcgcgcaat
     5401 ttttccagca aaggctcgtc aaaatgcaga ccagcggtcg gggctgcaac cgcgcccggt
     5461 ttttcgctat aaacggtttg ataaagttcg cggtcagcgt cttcgtccgg acggtcgata
     5521 tacggcggca gcggcatatg gccgatactg ttgaggatat ccagtaccga acgatcatca
     5581 ttgaattcga cttcaaacag tgcgccgtgg cgcgcggtca ttgttgcgtt aatactttcg
     5641 tcatcgccca gcagcagttc tgcgccaggt tttggcgctt tcgaggcgcg aatatgcgca
     5701 agaatgcgtt tgtcgtcgag catccgctca accagcactt caatcttgcc gccgctggct
     5761 ttacgcccaa acaggcgcgc cgggatcacg cgagtattat taaaaaccag aagatcaccg
     5821 gggttgagct tatcgagtaa atcggtgaaa gtaccgtgcg tcagcgcgcc cgtaggcccg
     5881 tccagcgaca gtaaacgaca gctactgcgt tcaggcatgg ggtagtgggc aatcagggat
     5941 tcgggcaatt caaaggagaa atcggtaacg cgcatgacac tgactcagac taaaataaga
     6001 ggcgggtagt ctagtgccgg ggcgctctcc ctgcaacctt tacccccctt tggatagaat
     6061 ataatcgatg aattttttag ctcacctgca tttagcccat ctcgcggaaa gctcgctttc
     6121 cggcaattta ctggctgatt tcgtacgcgg aaatcctgaa gaaagttttc cgcccgacgt
     6181 cgtggctggc attcatatgc atcgacgtat cgacgtattg actgacaatc tgccggaagt
     6241 ccgcgaagca cgggagtggt ttcgtcgtga aacgcgccgc gttgcgccta ttacgctgga
     6301 tgtcatgtgg gatcactttc tttcccgcca ctggtcgcag ctgtcgccgg actttccgct
     6361 acaggaattt atctgttatg cccgcaagca agtgatgacg attttgccgg actcaccgcc
     6421 acgttttatc aatctaaaca attacttgtg gtcagagcag tggctggtgc gctatcgcga
     6481 tatggatttc atccagaacg tgttaaacgg catggcaagc cgtcgcccac gtctggatgc
     6541 cctgcgtgac tcctggtacg atttaaacgc ccattatacc gccctcgaaa cccgcttctg
     6601 gcagttttat ccgcggatga tggcgcaggc gtcacacaag gcgttataaa acgttagttc
     6661 atccataccg tagccgaaat ggcaggcaaa gccagaatcc cgtcagtcag ttgcccatgc
     6721 ccttctttgc attgccattg cacggcattg agaaacggtg acgcgggtag caccacttca
     6781 caggcctcgc cacggttgat tgccaccagt acacgttgct gattcagcac gcggacaaat
     6841 accactacgt tatcttccgc atacagcacc tgacagccgc cacgacgcag cgcctgactt
     6901 ttcttacgca gcacaatcat tcgccggtac agcgcgaata acgccgtatc ctgcttttcc
     6961 acctgccagg ggaacggttt acggcaaaac ggatcgtttt taccatccag tcccacttca
     7021 tcaccgtaat aaatgcacgg tacaccaggc caggtgaaca gccagaccac cgccagcggc
     7081 aggcgcgcaa tatcccgacc gagcagcgtt ttaaatcgcg cagtatcgtg gctgtcgagc
     7141 tgattaaaca tacgtaattg ttgttgatga gaaagccctg cgcggtaatt atccatccag
     7201 gccatacagg tttgggcatc aatttactgc ggatcgtaag agatatcggt attggcaaga
     7261 aatccccaca acgggaatgt gaagccacga tagttcatgg cggcatcttc cacatcggcc
     7321 tgtaaccatt gccgtgcatc gccaaaatgt tcgccgacaa tatacgcttc cggctgggtt
     7381 tctttcgccg cttcggtgat cccagcaacg tgctgcatat tattgcgcgc cccacccgcc
     7441 tcccccagca tatgcaccac atccagccgc cagccgtcca tactccacgg cgctttcagc
     7501 caatggcgga caatactgtc ttccccgcga taaatttcat tcaccagact ttccgactga
     7561 taatccagct tcggcaagct ggcatagcca agccagtcga gcgccgtgcc atcatcacta
     7621 aacgagtacc agtcgcgcca gggcgattca gggttgtgac aagctccccc cgtgccacga
     7681 ttgtgcctgt caaaccaggc atgggaatcg ccactgtggt taaacacgcc gtccagcacc
     7741 agccgcattc ccagctgctg cgtattgtgt cgcaaacgca gcaacgcccc atcaccgcca
     7801 aactgcggat cgacatggcg ataatcctcg gtatcgtatt gatgtacgct gggagcttta
     7861 aacaccggat tgagatacag cgctgtcacg ccaagctttt tcagatacgg cagtttttcg
     7921 cttatcccgt ccagatcgcc gccatagaac gttgatctgc ccgcctgcgc cgtgaccggt
     7981 tcatcccagt cacgcaagat gatctcttgt ccggctgcat gatggtaata gacatgatcc
     8041 tgttcagctt cacgaggaag actacgcgca aaacgatcag ggaagatctg ataaaaaatc
     8101 tgatccgcag cccattgtgg gccgatatcc ggtacatcga cggcaaactg ctccagtcgt
     8161 gccggcggca ttcggctgaa gccctgcggt gacgcctggc tgcggctgac tgcgctgctt
     8221 atgcattggt actgacattt cttcgttatc gtgttctgta cgcagcataa tgcgctgcgg
     8281 tgggtcttcg cccgtcagcc acagtgtaat gagcagttga tctttgcttt gtttaacaaa
     8341 tgggggcacc ggcaggtgcc atgcatttaa catcataatt cccctgtgat gaaaatctga
     8401 tcaccttgcc atagcctaat gcaggatcac tcatcatctg aaggatattt gggggaggag
     8461 gacgggggcg gataactttc ggaatagccg gatcaggatt tcctcctgaa ccggcttaca
     8521 gaacgcaagg attactggtt ttcagccagc tgacgatcgt ggcgacgctt aaacatccag
     8581 ccaatcaaca gcacaacaat ccacgcgaaa ccgacataca gcgagatacg cgtatccggg
     8641 tgataaccaa tcaacccgat aataaagagc aggaaaatca gcccgccgat ggtcgttgct
     8701 accccacccg gcactttaaa tttcagcgcc ttaacttctt ctggcggcaa acggcgacgg
     8761 aaggcgattt gcgacagcag gatcataatc cacacccata ccgtggcgaa ggttgccagc
     8821 gaagcgatca ccaggaagac gttttccggc atgatgtagt tcagatacac cgcaaacagc
     8881 agcgcggtag tcatcaccag caccgtaacc cacggaatac cgcgacgcga cgttttgctg
     8941 aaaattttcg gtgcgctgcc ctgctctgcc ataccgtgga gcatacggcc tacgccaaat
     9001 acgtcactgt taattgccga cagcgaagcg gtcagcacaa caaagttaag aatgctggcg
     9061 gcaaaggtaa tgcccatatg ctggaacgtc agcacgaacg ggctaccggc agtgccaacc
     9121 tgattccacg ggtagataga cataatgacg aacagcgtac cgacgtagaa caccagaata
     9181 cgcatcggca cggagttaat cgcacgcgga atcgatttct caggatcttt cgcttcaccg
     9241 gcggtaatcc cgataatttc gatcccaccg taagcaaaca tcaccatttg caacgacatt
     9301 accatgccaa gccagccgtt actgaagaag ccgccgttgc tccacaggtt atgaataccg
     9361 gtcggttgcc cgccgttgcc aatcccccag atgatgatgc cgaaaccggc gacaatcatg
     9421 atgatgatgg tggcgacttt aaagaacgag aaccagaatt ccagctcacc gaataccttc
     9481 acgctcatca ggtttacggc gcaaatgatc agcaccacgc tcagtaccca aatccagtgc
     9541 ggcaccgtcg ggaaccagac acccatatag ataccaaaag cggtcacatc ggcgatggcg
     9601 acaattagga tttcaaagca gtaggtccag ccggtaatgt aacctgccag cgggccgagg
     9661 ttttcctgcg cataacgcga gaaagagctg gcggccgggt tatgtaccga catttccccc
     9721 agcgcacgca taatgatata cgccgcgata ccaccgataa tataggccaa caacacgctc
     9781 ggaccggcca ttttgatggc gtctgccgaa ccgtaaaaca gcccggtgcc aattgctgaa
     9841 cccagtgcca taaagcgtat gtggcgggta cttagcccac gctttagctt gttcttactt
     9901 tccatcaatt cctaacccat caacacaata aaaaaccacg gggcatcgca gccccgtggt
     9961 taaaacaaat gttcagtgat ttagtgagcg ctggaggtca cctgacgacc tgccgcgcga
    10021 tcccagataa tggccagaac caccatcacc actgttggca ttaaccacgc caggccttgt
    10081 tcggccagcg gtaaacgctg cgcccaggac ggtaagatat cgctgaatgc agatgctttg
    10141 atcccgtcga gaataccaaa aagcaggctg ataaacatcg gcggggcaat cacgcgggac
    10201 gaattatgcc accatgagcg tgtaaaactt aatacaacca gtgcgataca cggcggataa
    10261 atagcggtca gcaccggtac ggagatctgg atcagctggc ttaagccgag gttagacacc
    10321 accatcgaga agccgccgag gataaacacc agcgtacgat aagagagcgg tacgtactgg
    10381 gcaaagaatt ctgcacaagc acaggtcagg ccaactgccg ttaccaggca ggcgatgaag
    10441 attaacgccg ccagcaggaa gctaccgccg ccgccaaatg tgtgctgaac gtaagcatgc
    10501 agaatagcag cgccgtttgc agactgatcg accagcgacg cgctgtctga acccagacgg
    10561 aacagcgcca ggtacagcag agtcagacca acacccgcca tcaggccagc ccagacggta
    10621 taacgggtca gcagacgcgc ttcggtaacg ccacgagaac gcgccgcgtt aacaataacg
    10681 ataccaaaca ccattgcgcc cagcgtatcc atggtcagat agccgttaac gaagccgtta
    10741 gaaaacgcag cgttttgata agcctcagtc gccgtgctga tagaacccgc cggccagaca
    10801 atagcggcaa cagacaggat gaccagcgcg ataattttca gcggcgcaag gaagttgccc
    10861 acggtatcca gcagcttgcc cggatagagc gaaaccagaa taacgatagc gaaatagacc
    10921 aggctgtaga taaacagcgg cagcgcggaa tcacccgtca gcggcgcaat ccccacttca
    10981 aaggaaacgg tagctgtacg cggcgtagcg aaaagcggcc ccaccgccaa gtaacaaacc
    11041 gttgccagca gcacgccagc gactttaccg attggcgtgc tgaggctgtc aacaccgccg
    11101 ccaacttttg ccagcgccac taccgttaat accggcaggc caacggcagt aatgaggaag
    11161 ccgaatgccg cagtccagac gtgttcgcct gcctgcaagc cgaccattgg agggaaaata
    11221 atgttacctg cgccgacgaa caacgcaaat gtcataaagc ccagagcgat gatatcgcgc
    11281 gatcttaatt gatgggtcat aaatcatact gcctgtggat gtggtgttgt aacgttaaat
    11341 ttttgtgcca atacctgggg atgatacagc ggtatattta aacaatttta gcgggaaata
    11401 ctcccaacca ggcgcggcga agaatagttt ttcgatttac cgcgttaatg cagtcagtat
    11461 gacagcacct gaagcgcaat ttaaacgctt ataacgtttt aaagcaagga gggatctaaa
    11521 aaccagaggt atatagcgat aagaaatcac caaccagtat aaaacactat ttccgtgaaa
    11581 aagacatggc taatcatgcg aacaaaaaat caccaaccgt tgtaaaatct aacgcccgta
    11641 ttttgactgc aaagaaaata agccagcatc gactggctta tggcaataaa agatgacaaa
    11701 ggcggattaa tcgctgtttt tggcaattaa acgttccggg ataacaaaac tgaaacgtgt
    11761 tccttttcct actgtactct caatattcag gcgactttcg tgatgattca cagcatgttt
    11821 cacgatcgct aaccctaatc cgctaccgcc ggtttgccgg gaacgcgctt tatcaacgcg
    11881 ataaaaacgc tcggtcaggc gcggaatatg ctccggtgca atgcccggtc cgttatcttc
    11941 aacgctaaat tcggcaccgt gcggcactcg ctgccagcgt acggtgatat gcgtgccttc
    12001 tggagtatga ttcacggcgt tatagaccag gttcgaaatc gcactgcgta gctgatcttc
    12061 gttgccagac actttgaggc cgttatctat ctcaaaggta aatgtctgtt ttttctgact
    12121 cagagtctga gcctcgcgct caacaacgcg cagcatcatc ggcacatcaa ccttttcatt
    12181 gagcaattgc gtcggcgcgg cttcaatttt cgacagcgtt agcaactgct tcaccagccc
    12241 ttccatccgc tgggtctgct cgcgcatggt gtgcaacgct ttttcgcgta ccgcgccttc
    12301 cagcggctgc tcatccatca tctccaggta accctgtaac acggtcaatg gcgtacgtaa
    12361 ctcatggctc acgttggcaa aaaagttacg ccgcgcccct tccagttgat gcatttgcgt
    12421 gacatcacgc gccaccatca gcaactgttt gtgggtataa ggcatgacgc gaatttccag
    12481 atgccgcccg gtgttgagca ccagattgag cgggcgagaa aaatcacgcg ttttcagata
    12541 ttgcgtaaac tccgggtaac gcagtaggtt aaggatgttc tgcccgttat cttccggcca
    12601 gcgcaaacca agaatttgtt gcgccagacc gttacaccag aaaataccgc cctcttccgt
    12661 ggtcagcacc accgcgtcgg gcagcgactc cgcgccgcta cgaaagcgtt taatcagatt
    12721 gcccagttca cggcggcgtt ttttatttcg cagctgcatc tggtgtaagc cgtatagtag
    12781 cggttcccag ctaccacgcc ccggtggcgg ggtcatactg cgatccaccc acaaccacca
    12841 tgaaaggcgc aataaattcc agaaatgcca gataagcagt cctgttaccg atgccagcaa
    12901 aaaccagggc aggtaaccaa aaaatgcacc caggatgaaa gccgggaggc agcaaagtag
    12961 cagctccagc accagccttt tccacgacag ccattccagc acgtaagata ctccagttaa
    13021 gaaatcataa gccctgctct gcgtccgatg agcaaggcgt taaaagcggg ttgaaaaacg
    13081 atatcctgta ccgcgcacgg tctgcaccat gcggtcatgc ccgccgggct ccagtgcttt
    13141 acgcaggcga cgaatgtgga catcgaccgt gcggtcttcc acatacacgt tagttcccca
    13201 gacgtggttt aacagctgct cgcggctgta cacgcgctca ggatgcgtca taaaaaagtg
    13261 cagcagttta aattctgtcg gccccatctc cagcggctct tcgcccgcca tcactcggtg
    13321 agatgtcggg tcgagactta atccctgcat ctcaatcacc tcttccaccg ccattggcga
    13381 aatacggcgc attaccgctt tgattcgcgc caccagctcc ttcggcgaaa acggcttggt
    13441 gatatagtca tccgcgccgg tttcaaggcc gcgcacgcga tcttcttctt cccctctggc
    13501 ggtcaacatc accactggaa tatcccgggt catcgactcg cgcttgaggt gtttgatgaa
    13561 ctggataccg gagccgccag gtaacatcca gtcaaggaga attaaatccg gccagggttc
    13621 attcagttga ttcacagcac tgtcataatc ttccgcttcg accggctgaa agccattttg
    13681 ttcgagcacg aagcagacca tttcgcgaat tggagcttca tcttctacga ccagaatacg
    13741 tctcgccatg atttgccctg ttgtaataaa taggttgcga tcattaatgc gacgtcatta
    13801 tgcgtcagat ttatgacaga tttatgaaaa gctcgtcgca catatcttca ggttattgat
    13861 ttccgtggcg cagaaaaaag caaatggcac atctgtttgg gtataatcgc gaccatgctt
    13921 tttcgccagg gaaccgttat gcgcatcctt cacacctcag actggcatct cggccagaac
    13981 ttctacagta aaagccgcga agctgaacat caggcttttc ttgactggct gctggagaca
    14041 gcacaaaccc atcaggtgga tgcgattatt gttgctggtg atgttttcga taccggctcg
    14101 ccgcccagtt acgcccgcac gttatacaac cgttttgttg tcaatttaca gcaaactggc
    14161 tgtcatctgg tggtactggc aggaaaccat gactcggtcg ccacgctgaa tgaatcgcgc
    14221 gatatcatgg cgttcctcaa tacaaccgtg gtcgccagcg ccggacatgc gccgcaaatc
    14281 ttgcctcgtc gcgacgggac gccaggcgca gtgctgtgct ccattccgtt tttacgcccg
    14341 cgtgacatta tttccagcca ggcggggctt aacggtattg aaaaacagca gcatttactg
    14401 gcagcgatta ccgattatta ccaacaacac tatgccgatg cctgcaaact gcgcggcgat
    14461 cagcctctgc ccatcatcgc cacgggacat ttaacgaccg tgggtgccag taaaagtgac
    14521 gccgtgcgtg acatttatat tggcacgctg gacgcgtttc cggcacaaaa ctttccacca
    14581 gccgactaca tagcgctcgg gcatattcac cgcgcacaga ttattggcgg catggaacat
    14641 gttcgctatt gcggttcccc cattccactg agttttgatg aatgcggtaa gagtaaatat
    14701 gtccatctgg tgacattttc aaacggcaaa ttagagagcg tggaaaacct gaacgtaccg
    14761 gtaactcaac ccatggcggt gctgaaaggc gatctggcgt cgattaccgc acagctggaa
    14821 cagtggcgcg atgtatcgca ggagccacct gtctggctgg atatcgaaat cactactgat
    14881 gagtatctgc atgatattca gcgcaaaatc caggcattaa ccgaatcatt gcctgtcgaa
    14941 gtattgctgg tacgtcggag tcatgaacag cgcgagcgtg tgttagccag ccaacagcgt
    15001 gaaaccctca gcgaactcag cgtcgaagag gtgttcaatc gccgtctggc actggaagaa
    15061 ctggatgaat cgcagcagca acgtctgcag catcttttca ccacgacgtt gcataccctc
    15121 gccggagaac acgaagcatg aaaattctca gcctgcgcct gaaaaacctg aactcattaa
    15181 aaggcgaatg gaagattgat ttcacccgcg agccgttcgc cagcaacggg ctgtttgcca
    15241 ttaccggccc aaccggtgcg gggaaaacca ccctgctgga cgccatttgt ctggcgctgt
    15301 atcacgaaac tccgcgtctc tctaacgttt cacaatcgca aaatgatctc atgacccgcg
    15361 ataccgccga atgtctggcg gaggtggagt ttgaagtgaa aggtgaagcg taccgtgcat
    15421 tctggagcca gaatcgggcg cgtaaccaac ccgacggtaa tttgcaggtg ccacgcgtag
    15481 agctggcgcg ctgcgccgac ggcaaaattc tcgccgacaa agtgaaagat aagctggaac
    15541 tgacagcgac gttaaccggg ctggattacg ggcgcttcac ccgttcgatg ctgctttcgc
    15601 aggggcaatt tgctgccttc ctgaatgcca aacccaaaga acgcgcggaa ttgctcgagg
    15661 agttaaccgg cactgaaatc tacgggcaaa tctcggcgat ggtttttgag cagcacaaat
    15721 cggcccgcac agagctggag aagctgcaag cgcaggccag cggcgtcgcg ttgctcacgc
    15781 cggaacaagt gcaatcgctg acagcgagtt tgcaggtact tactgacgaa gaaaaacagt
    15841 tacttaccgc gcagcagcaa gaacaacaat cactaaactg gttaacgcgt ctggacgaat
    15901 tgcagcaaga agccagccgc cgtcagcagg ccttgcaaca ggcgttagcc gaagaagaaa
    15961 aagcgcaacc tcaactggcg gcgctcagtc tggcacaacc ggcacgaaat cttcgtccgc
    16021 actgggaacg catcgcagaa cacagcgcgg cgctggcgca tactcgccag cagattgaag
    16081 aagtaaatac tcgcttacag agcacaatgg cgcttcgcgc gagcattcgc caccacgcgg
    16141 cgaagcagtc agcagaatta cagcagcagc aacaaagcct gaatacctgg ttacaggaac
    16201 acgaccgctt ccgtcagtgg aacaacgaac tggcgggttg gcgtgcgcag ttctcccaac
    16261 aaaccagcga tcgcgagcat ctgcggcaat ggcagcaaca gttaacccat gctgagcaaa
    16321 aacttaatgc gcttgcggcg atcacgttga cgttaaccgc cgatgaagtt gctaccgccc
    16381 tggcgcaaca tgctgagcaa cgcccactgc gtcagcgcct ggtcgcgctg catgggcaga
    16441 ttgttcccca acaaaaacgt ctggcgcagt taatggtcac tatccagaat ggatctctgg
    16501 aacagacgca acgtaatgtc gcacttaacg aaatgcgcca gcgttataaa gaaaagacgc
    16561 agcaacttgc cgatgtgaaa accatttgcg agcaggaagc gcgcatcaaa acgctggaag
    16621 cccagcgtgc acagttacag gcgggtcagc cttgtccact ttgtggttcc accagccacc
    16681 cggcggtcga ggcgtatcag gcgctggagc ctggtgttaa tcagtctcga ttactggcgc
    16741 tggaaaacga agttaaaaag ctcggcgaag aaggtgcggc gctgcgcggg caactggatg
    16801 cattaacgaa gcagcttcag cgcgatgaaa acgaagcgca aagcctccga caagatgagc
    16861 aagcacttac tcaacaatgg caagccgtca cggccagcct caatatcacc ttgcagccac
    16921 aggacgatat tcaaccgtgg ctggatgcac aagatgagca cgaacgccag ctgcggttac
    16981 tcagccaacg acatgaatta caagggcaga ttgccgcgca taatcagcaa attatccagt
    17041 atcaacagca aattgaacaa cgccagcagc agctcttaac ggcattggcg ggttatgcac
    17101 tgacattgcc acaggaagat gaagaagaga gctggttggc gacacgtcag caagaagcgc
    17161 agagctggca gcaacgccag aacgaattaa ccgcgctgca aaaccgtatt cagcagctga
    17221 cgccgattct ggaaacgttg ccgcaaagtg atgatctccc gcacagcgaa gaaactgtgg
    17281 cgctggataa ctggcggcag gttcatgaac aatgtctcgc attacacagc cagcagcaga
    17341 cgttacagca acaggatgtt ctggcggcgc aaagtctgca aaaagcccag gcgcagtttg
    17401 acaccgcgct acaggccagc gtctttgacg atcagcaggc gttccttgcg gcgctaatgg
    17461 atgaacaaac actaacgcag ctggaacagc tcaagcagaa tctggaaaac cagcgcagtc
    17521 aggcgcaaac gctggtcact cagacagcag aaacgctggc acagcatcaa caacaccgac
    17581 ctgacgggtt ggctctcact gtgacggtgg agcagattca gcaagagtta gcgcaaactc
    17641 accaaaagtt gcgtgaaaac accacgagtc aaggcgagat tcgccagcag ctgaagcagg
    17701 atgcagataa ccgtcagcaa caacaaacct taatgcagca aattgctcaa atgacgcagc
    17761 aggttgagga ctggggatat ctgaattcgc taataggttc caaagagggc gataaattcc
    17821 gcaagtttgc ccaggggctg acgctggata atttagtcca tctcgctaat cagcaactta
    17881 cccggctgca cgggcgctat ctgttacagc gcaaagccag cgaggcgctg gaagtcgagg
    17941 ttgttgatac ctggcaggca gatgcggtac gcgatacccg taccctttcc ggcggcgaaa
    18001 gtttcctcgt tagtctggcg ctggcgctgg cgctttcgga tctggtcagc cataaaacac
    18061 gtattgactc gctgttcctt gatgaaggtt ttggcacgct ggatagcgaa acgctggata
    18121 ccgcccttga tgcgctggat gccctgaacg ccagtggcaa aaccatcggt gtgattagcc
    18181 acgtagaagc gatgaaagag cgtattccgg tgcagatcaa agtgaaaaag atcaacggcc
    18241 tgggctacag caaactggaa agtacgtttg cagtgaaata actattcagc aggataatga
    18301 atacagaggg gcgaattatc tcttggcctt gctggtcgtt atcctgcaag ctatcacttt
    18361 attggctacg gtgattggta gccgttctgg tggttgtgat gatggtatga aaaaagtcat
    18421 tttatctttg gctctgggca cgtttggttt ggggatggcc gaatttggca ttatgggcgt
    18481 gctcacggag ctggcgcata acgtaggaat ttcgattcct gctgccgggc atatgatctc
    18541 gtattatgca ctgggggtgg tggtcggtgc gccaatcatc gcactctttt ccagccgcta
    18601 ctcactcaaa catatcttgt tgtttctggt ggcgttgtgc gtcattggca acgccatgtt
    18661 cacgctctct tcgtcttacc tgatgctcgc cattggtcgg ctggtatccg gctttccgca
    18721 tggcgcattt tttggcgtcg gcgcgatcgt gttatcaaaa attatcaaac ccggaaaagt
    18781 caccgccgcc gtggcgggga tggtttccgg gatgacagtc gccaatttgc tgggcattcc
    18841 gctgggaacg tatttaagtc aggaatttag ctggcgttac acctttttat tgatcgctgt
    18901 ttttaatatt gcggtgatgg catcggtcta tttttgggtg ccggatattc gcgacgaggc
    18961 gaaaggaaag ctgcgcgaac aatttcactt tttgcgcagc ccggccccgt ggttaatttt
    19021 cgccgccacc atgtttggca acgcaggtgt gtttgcctgg ttcagctacg taaagccata
    19081 catgatgttt atttccggtt tttcggaaac ggcgatgacc tttattatga tgttagttgg
    19141 gctagggatg gtgctgggaa atatgctaag tggcaggatt tcaggacgtt attcaccact
    19201 gcgcattgca gcagtgactg actttataat tgtactggca ctgctgatgc tctttttctg
    19261 cggcggcatg aaaacaacgt cgcttatttt tgcttttatt tgttgcgcgg gattatttgc
    19321 cctttcagca ccgctacaaa tattgttact acaaaacgcc aaaggcggag agttattagg
    19381 tgccgcaggt gggcaaatag cgtttaacct cggtagcgcc gtcggcgcat attgcggtgg
    19441 tatgatgctg acgctggggc tggcatataa ttacgtggcg ctgcctgccg ccctgctttc
    19501 gtttgctgcg atgtcgtcgt tgctgctgta tggtcgctat aagcgccagc aagcggcgga
    19561 tactccggtg ctggcgaaac cactggggta ggttatagtc tcggtgttca ttacttattg
    19621 ccggatgcgg cgtgaacgcc ttatccgccc tacgcggttc tggcacattt tgcaggcctg
    19681 ataagacgcg gcaagcgtcg catcaggcat gatgcgccaa ttgcctacgt tttttactct
    19741 tgtggccata accacgcagc gccgcgtacg ccgctggaat caccgtgctt cgccttacgc
    19801 accggcgttt cacattcgcc gccgaagaca aattgtttaa tcaactgcgg aaccgtttga
    19861 tataaacggt ctacattgct cat
//
LOCUS       DADMHM010000062        19742 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.063, whole genome shotgun sequence.
ACCESSION   DADMHM010000062 DADMHM010000000
VERSION     DADMHM010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 19742)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19742)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19742
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.063"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            57..832
                     /locus_tag="JN125_001934"
                     /pseudo
     CDS             57..832
                     /locus_tag="JN125_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000200160.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase subunit EutC"
     gene            842..1501
                     /gene="eutL"
                     /locus_tag="JN125_001935"
     CDS             842..1501
                     /gene="eutL"
                     /locus_tag="JN125_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutL"
                     /protein_id="HAY8871730.1"
                     /translation="MPALDLIRPSVTAMRVIASVNAEFARELKLPPHIRSLGLISADS
                     DDVTYIAADEATKQAMVEVVYGRSLYAGAAHGPSPTAGEVLIMLGGPNPAEVRAGLDA
                     MVAHIENGAAFQWANDAENTAFLAHVVSRTGSYLSSTAGITLGDPMAYLVAPPLEATY
                     GIDAALKSADVQLVTYVPPPSETNYSAAFLTGSQAACKAACNAFTDAVLEIARNPIQR
                     A"
     gene            1514..2014
                     /gene="eutK"
                     /locus_tag="JN125_001936"
     CDS             1514..2014
                     /gene="eutK"
                     /locus_tag="JN125_001936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutK"
                     /protein_id="HAY8871731.1"
                     /translation="MINALGLLEVDGMVAAIDAADAMLKAANVRLLSHEVLDPGRLTL
                     VVEGDLAACRAALDAGCAAAMRTGRVISRKEIGRPDDDTQWLVTGFNRQPKQPVREPD
                     APVIVAESADELLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKRSSR
                     YRLKPH"
     gene            2060..3112
                     /gene="eutR"
                     /locus_tag="JN125_001937"
     CDS             2060..3112
                     /gene="eutR"
                     /locus_tag="JN125_001937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator EutR"
                     /protein_id="HAY8871732.1"
                     /translation="MKKTRTANLHHLYHEPLPENLKLTPKVEVDNVHQRQTTDVYEHA
                     LTITAWQQIYDQLHPGKFHGEFTEILLDDIQVFREYTGLALRQSCLVWPNSFWFGIPA
                     TRGEQGFIGSQCLGSAEIATRPGGTEFELSTPDDYTILGVVLSEDVITRQANFLHNPD
                     RVLHMLRSQSALEVKEQHKAALWGFVQQALATFCENPENLHQPAVRKVLGDNLLMAMG
                     AMLEDAQPMVTAESISHQSYRRLLSRAREYVLENMSEPVTVLDLCNQLHVSRRTLQNA
                     FHAILGIGPNAWLKRIRLNAVRRELISPWSQSTTVKDAAMQWGFWHLGQFVTDYQQLF
                     AEKPSLTLHQRMREWG"
     gene            complement(3118..4017)
                     /gene="hemF"
                     /locus_tag="JN125_001938"
     CDS             complement(3118..4017)
                     /gene="hemF"
                     /locus_tag="JN125_001938"
                     /EC_number="1.3.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-dependent coproporphyrinogen oxidase"
                     /protein_id="HAY8871733.1"
                     /translation="MKPDAHQVKQFLLNLQDTICQQLTAVDGAKFVEDSWQREAGGGG
                     RSRVLRNGGVFEQAGVNFSHVHGEAMPASATAHRPELAGRSFEAMGVSLVVHPHNPYV
                     PTSHANVRFFIAEKPGAEPVWWFGGGFDLTPFYGFEEDAIHWHRTARDLCLPFGEDVY
                     PRYKKWCDDYFYLKHRNEQRGIGGLFFDDLNTPDFDHCFAFMQAVGKGYTDAYLPIVE
                     RRKAMAYGERERNFQLYRRGRYVEFNLVWDRGTLFGLQTGGRTESILMSMPPLVRWEY
                     DYQPKDGSPEAALSEFIKVRDWV"
     gene            complement(4021..4890)
                     /gene="amiA"
                     /locus_tag="JN125_001939"
     CDS             complement(4021..4890)
                     /gene="amiA"
                     /locus_tag="JN125_001939"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase AmiA"
                     /protein_id="HAY8871734.1"
                     /translation="MSTFKPLKTLTSRRQVLKAGLAALTLSGMSQAIAKDEPLKTSNG
                     HSKPKAKKSGGKRVVVLDPGHGGIDTGAIGRNGSKEKHVVLAIAKNVRSILRNHGIDA
                     RLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGFTNPKAAGASVFALSNRGASSAMA
                     KYLSERENRADEVAGKKATDKDHLLQQVLFDLVQTDTIKNSLTLGSHILKKIKPVHKL
                     HSRNTEQAAFVVLKSPSVPSVLVETSFITNPEEERLLGTAAFRQKIATAIAEGVISYF
                     HWFDNQKAHSKKR"
     gene            5104..5529
                     /locus_tag="JN125_001940"
     CDS             5104..5529
                     /locus_tag="JN125_001940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase YpeA"
                     /protein_id="HAY8871735.1"
                     /translation="MEIRVFRQEDFEEVITLWERCDLLRPWNDPEMDIERKMNHDVSL
                     FLVAEVNGEVVGTVMGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPK
                     IQINVPEDNDMVLGMYERLGYEHADMLSLGKRLIEDEEY"
     gene            5516..5965
                     /locus_tag="JN125_001941"
     CDS             5516..5965
                     /locus_tag="JN125_001941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708284.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2919 domain-containing protein"
                     /protein_id="HAY8871736.1"
                     /translation="MKSTEFHPVHYDAHGRLRLPLLFWLVLLLQARTWVLFIIAGASR
                     EQGTALLNLFYPDHDNFWLGLIPGIPAVLAFLLSGRRASFPRTWHVLYFLLLLAQVVL
                     LCWQPWLWLNGESVSGIGLALVVADIVELIWLLTNRRLRACFNEEKE"
     gene            6172..6747
                     /locus_tag="JN125_001942"
     CDS             6172..6747
                     /locus_tag="JN125_001942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RpoE-regulated lipoprotein"
                     /protein_id="HAY8871737.1"
                     /translation="MKSLRLMLCAMPLMLTGCSTMSSVNWSAANPWNWFGSSTKVSEQ
                     GVGELTASTPLQEQAIADALDGDYRLRSGMKTANGNVVRFFEVMKGDNVAMVINGDQG
                     TISRIDVLDSDIPADTGVKIGTPFSDLYSKAFGNCQKADGDDNRAVECKAEGSQHISY
                     QFSGEWRGPEGLMPSDDTLKNWKVSKIIWRR"
     gene            6843..7742
                     /gene="yfeX"
                     /locus_tag="JN125_001943"
     CDS             6843..7742
                     /gene="yfeX"
                     /locus_tag="JN125_001943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311329.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphyrinogen peroxidase"
                     /protein_id="HAY8871738.1"
                     /translation="MSQVQSGILPEHCRAAIWIEANVKGEVDALRAASKTFADKLATF
                     EAKFPDAHLGAVVAFGNNTWRALSGGVGAEELKDFPGYGKGLAPTTQFDVLIHILSLR
                     HDVNFSVAQAAMEAFGDCIEVKEEIHGFRWVEERDLSGFVDGTENPAGEETRREVAVI
                     KDGVDAGGSYVFVQRWEHNLKQLNRMSVHDQEMMIGRTKEANEEIDGDERPETSHLTR
                     VDLKEDGKGLKIVRQSLPYGTASGTHGLYFCAYCARLHNIEQQLLSMFGDTDGKRDAM
                     LRFTKPVTGGYYFAPSLDKLMAL"
     gene            complement(7800..9104)
                     /gene="pbp4b"
                     /locus_tag="JN125_001944"
                     /pseudo
     CDS             complement(7800..9104)
                     /gene="pbp4b"
                     /locus_tag="JN125_001944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311328.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin binding protein PBP4B"
     gene            complement(9109..10533)
                     /gene="murP"
                     /locus_tag="JN125_001945"
     CDS             complement(9109..10533)
                     /gene="murP"
                     /locus_tag="JN125_001945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N-acetylmuramic acid transporter subunit
                     IIBC"
                     /protein_id="HAY8871739.1"
                     /translation="MAKEISSELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVD
                     PNIKTLEGVKSVILTSDQVQVVFGPGKAHRAAKAMSELLGEAPVQDAAEIAAQNKRQL
                     KAKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIATVMHVPADAQGTLPDALN
                     FMKVFSKGLFTFLVILVGYNAAQAFGGTGVNGAIIAALFLLGYNPAATTGYYAGFHDF
                     FGLPIDPRGNIIGVLIAAWACARIEGMVRRFMPDDLDMLLTSLITLLITATLAYLIIM
                     PLGGWLFEGMSWLFMHLNSNPFGCAVLAGLFLIAVVFGVHQGFIPVYLALMDSQGFNS
                     LFPILSMAGAGQVGAALALYWRSQPHSALRSQVRGAIIPGLLGVGEPLIYGVTLPRMK
                     PFVTACLGGTAGGLFIGLIAWWGLPMGLNSAFGPSGLVALPLMTSAQGILPAMAVYAG
                     GILVAWVCGFIFTTLFGCRNVNLD"
     gene            complement(10537..11433)
                     /gene="murQ"
                     /locus_tag="JN125_001946"
     CDS             complement(10537..11433)
                     /gene="murQ"
                     /locus_tag="JN125_001946"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HAY8871740.1"
                     /translation="MQLEKMITEGSNAASAEIDRVSTLEMCRIINDEDKTVPLAVERV
                     LPDIAAAIDVIHAQVSGGGRLIYLGAGTSGRLGILDASECPPTYGVKPGLVVGLIAGG
                     EYAIQHAVEGAEDSREGGVNDLKNINLTAQDVVVGIAASGRTPYVIAGLEYARQLGCR
                     TVGISCNPGSAVSTTAEFAITPIVGAEVVTGSSRMKAGTAQKLVLNMLSTGLMIKSGK
                     VFGNLMVDVVATNEKLHVRQVNIVKNATGCNAEQAEAALIACERNCKTAIVMVLKNLD
                     AAEAKKRLDQHGGFIRQVLDKE"
     gene            11597..12454
                     /gene="murR"
                     /locus_tag="JN125_001947"
     CDS             11597..12454
                     /gene="murR"
                     /locus_tag="JN125_001947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MurR"
                     /protein_id="HAY8871741.1"
                     /translation="MLYLTKISNAGSEFTENEQKIADFLQANVSELQSVSSRQMAKQL
                     GISQSSIVKFAQKLGAQGFTELRMALIGEYSASREKTNTTALHLHSSITSDDSLEVIA
                     RKLNREKELALEQTCALFDYARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKI
                     GYRVACEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSL
                     ADSPLRRLAHFTLDTVSGETEWRSSSMSTRTAQNSVTDLLFVGLVQLNDVASLKMIQR
                     SSELTQRLK"
     gene            12583..13374
                     /gene="ucpA"
                     /locus_tag="JN125_001948"
     CDS             12583..13374
                     /gene="ucpA"
                     /locus_tag="JN125_001948"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase UcpA"
                     /protein_id="HAY8871742.1"
                     /translation="MGKLTGKTALITGALQGIGEGIARTFARHGANLILLDISPEIEK
                     LADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMS
                     DDDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKA
                     AIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPM
                     RRLADPLEVGELAAFLASDESSYLTGTQNVIDGGSTLPETVSVGI"
     gene            13545..14561
                     /locus_tag="JN125_001949"
     CDS             13545..14561
                     /locus_tag="JN125_001949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY8871743.1"
                     /translation="MAVNLLKKNSLALVASLLLAGHVQATELLNSSYDVSRELFAALN
                     PPFEQQWAKDNGGDKLTIKQSHAGSSKQVLAILQGLKTDVVTYNQVTDVQILHDKGKL
                     IPADWQSRLPNNSSPFYSTMGFLVRKGNPKNIHDWNDLVRSDVKLIFPNPKTSGNARY
                     TYLAAWGAADKADGGDKAKTEQFMTQFLKNVEVFDTGGRGATTTFAERGLGDVLISFE
                     SEVNNIRKQYEAQGFEVVIPKTNILAEFPVAWVDKNVQANGTEKAAKAYLNWLYSPQA
                     QTIITDYYYRVNNPEVMDKLKDKFPQTELFRVEDKFGSWPEVMKTHFTSGGELDKLLA
                     AGRN"
     gene            14561..15394
                     /gene="cysT"
                     /locus_tag="JN125_001950"
     CDS             14561..15394
                     /gene="cysT"
                     /locus_tag="JN125_001950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000458418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter permease
                     CysT"
                     /protein_id="HAY8871744.1"
                     /translation="MFAVSSRRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLAQMSW
                     AQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDL
                     PFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQ
                     PVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFI
                     AGNIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFSINTLQSRFGRRVVG
                     H"
     gene            15394..16269
                     /gene="cysW"
                     /locus_tag="JN125_001951"
     CDS             15394..16269
                     /gene="cysW"
                     /locus_tag="JN125_001951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026168.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter permease
                     CysW"
                     /protein_id="HAY8871745.1"
                     /translation="MAEVTQLKRYDARPINWGKWFLIGIGMLVSAFILLVPMIYIFVQ
                     AFSKGLMPVLQNLADPDMLHAIWLTVMIALIAVPVNLVFGILLAWLVTRFNFPGRQLL
                     LTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHNLQIMFSWPGMVLVTIFVTCPF
                     VVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEF
                     GAVSVVSGSIRGETLSLPLQIELLEQDYNTVGSFTAAALLTLMAIITLFLKSMLQWRL
                     ENQEKRAQQEEHHEH"
     gene            16259..17356
                     /gene="cysA"
                     /locus_tag="JN125_001952"
     CDS             16259..17356
                     /gene="cysA"
                     /locus_tag="JN125_001952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/thiosulfate ABC transporter ATP-binding
                     protein CysA"
                     /protein_id="HAY8871746.1"
                     /translation="MSIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTL
                     LRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVL
                     PRRERPNSAAIKAKVTKLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLL
                     DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEATEVADRVVVMSLGNIEQA
                     DAPDQVWREPATRFVLEFMGEVNRLQGTIRGGQFHVGAHRWPLGYTPAYQGPVDLFLR
                     PWEVDISRRTSLDSPLPVQVLEASPKGHYTQLVVQPLGWYNEPLTVVMHGDDAPQRGE
                     RLFVGLQHAWLYNGDERIETRDEELALAQSA"
     gene            17490..18401
                     /gene="cysM"
                     /locus_tag="JN125_001953"
     CDS             17490..18401
                     /gene="cysM"
                     /locus_tag="JN125_001953"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase B"
                     /protein_id="HAY8871747.1"
                     /translation="MSTLEQTIGNTPLVKLQRMGPNNGSEVWLKLEGNNPAGSVKDRA
                     ALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAA
                     MRAYGAELILVTKEQGMEGARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQ
                     QTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGIRRWPAEYLP
                     GIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAKANPGAVVV
                     AIICDRGDRYLSTGVFGEEHFSQGAGI"
     gene            complement(18404..18772)
                     /locus_tag="JN125_001954"
     CDS             complement(18404..18772)
                     /locus_tag="JN125_001954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfeK family protein"
                     /protein_id="HAY8871748.1"
                     /translation="MKKIICLVITLLMTLPAYAKLTAHEEARINAMLEGLSQKKDLIF
                     VRNGDEHTCDEAVSHLRLKLGNTRNRIDTAEQFIDKVASSSSITGKPYIVKIPGKSDE
                     NAQPFLHALIAQTDKTVPAQ"
     gene            18877..19728
                     /gene="pdxK"
                     /locus_tag="JN125_001955"
                     /gene_synonym="thiJ"
     CDS             18877..19728
                     /gene="pdxK"
                     /locus_tag="JN125_001955"
                     /gene_synonym="thiJ"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine/pyridoxal/pyridoxamine kinase"
                     /protein_id="HAY8871749.1"
                     /translation="MSSLLLFNDKSRALQADIVAVQSQVVYGSVGNSIAVPAIKQNGL
                     NVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRALQEHDALRQLRAVTTGYMGTASQ
                     IKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNI
                     FELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVITSASGNEENQEMQVVVVSADSVNV
                     ISHSRVKTDLKGTGDLFCAQLISGLLKGKALNDAVHRAGLRVLEVMRYTQQHESDELI
                     LPPLAEA"
BASE COUNT         4549 a         5003 c         5577 g         4613 t
ORIGIN      
        1 aaacggcccc cgcgctgtca gaagcaaagt gcaccaccac cacctgtgcg gcaccggtga
       61 cctcggaaag ctgcgcgttg gatttaggtt ctgcggaagc aaaagcgtgg attggtgttg
      121 aaaacccgca tcgcgcagac gtattaacag aactgcgtcg cagcaccgtg gcccgcgttt
      181 gtaccggtcg tgccggtccg cgtccgcgta cccaggcgtt gctgcgtttc ctggccgatc
      241 actctcgttc gaaagatacc gtactgaaag aagtgccgga agagtgggtg aaagcgcagg
      301 gcttgctgga agtacgctcc gaaattagcg acaaaaatct ctacctgact cgcccggata
      361 tgggccgcgc ctgtgtgcag aagctgttga agcgctgaaa gcacagtgtg ttgctaatcc
      421 ggacgtacag gtcgttattt ctgatggcct gtcaactgat gccatcaccg tgaactacga
      481 agagatcctg ccgccgctga tggcgggcct gaaacaggcc gggctgaaag tcggcacgcc
      541 attctttgtt cgttatggtc gcgtgaagat tgaagatcag atcggtgaga tcctcggcgc
      601 gaaagtggtg atcctgctgg tgggggaacg tccggggttg ggtcagtcag aaagcctctc
      661 ctgttacgcc gtttactcgc cgcgtatggc gaccaccgtt gaggccgatc gcacctgcat
      721 ctctaacatt caccagggcg gcacgccgcc ggttgaagcc gcagccgtca ttgtggattt
      781 ggcgaaacgt atgctggagc agaaagcatc cggcatcaac atgacccgat aaggaggcat
      841 catgccagct ttagatttga ttcgaccgtc ggtaaccgcc atgcgggtga ttgcctccgt
      901 taacgctgaa tttgcgcgtg aactaaaatt gccgccgcat attcgtagcc tcgggctgat
      961 ttctgctgat tccgatgacg tcacctacat tgcggctgac gaagcgacca agcaggcgat
     1021 ggtcgaagtg gtatatggcc gctcgctgta tgcgggagca gcacacggac cgtcaccgac
     1081 tgccggtgaa gtgctgatta tgcttggtgg gccaaacccg gcggaagtgc gtgctggtct
     1141 ggatgcgatg gttgcgcata ttgaaaatgg cgctgctttc cagtgggcta atgacgcaga
     1201 aaacaccgca ttcctggcac atgtagtttc gcgtaccggt tcttatctct catcaaccgc
     1261 cgggatcacg cttggcgatc cgatggcgta tctggtggca ccgccgctgg aagcgaccta
     1321 cggcattgat gcagcgttga aatctgccga cgtacagctg gtgacctatg tcccgccacc
     1381 gtctgaaacc aactactcgg cagcattttt aaccggtagc caggccgcgt gtaaagcagc
     1441 ctgtaacgcc tttaccgatg cagtgctgga aatcgcgcgt aatccaatcc agcgtgcgta
     1501 acggaggttg ccgatgatca atgcactggg attgctggaa gtggacggca tggtcgccgc
     1561 gatagatgca gcggatgcca tgctcaaagc agctaacgtt cgtctgctca gtcacgaagt
     1621 gcttgaccct ggtcgcttaa cgctggtggt ggaaggcgat ctggcggcgt gtcgtgcggc
     1681 gctggacgca ggttgtgctg ccgcgatgcg taccgggcgt gtcatcagcc gcaaggagat
     1741 cggtcggcca gacgatgaca cccagtggct ggttactggc tttaaccgcc agccgaagca
     1801 acccgtaagg gaacccgacg cgccagttat cgtcgcggaa tctgctgacg agttgttggc
     1861 gctgttaaca tcagtacgtc agggaatgac ggcaggagaa gtggctgccc actttggctg
     1921 gccgctggaa aaagccagaa atgcgctcga acagctcttt tctgccggga cgttacgtaa
     1981 acgcagtagt cgttatcgtc tcaagcccca ttaacctgtc ggaggtgccg ggtgtcctac
     2041 aacacccggc attaacatca tgaaaaagac ccgtacagcc aatttgcacc atctttatca
     2101 tgaaccctta cccgaaaacc tgaagctcac gccgaaggtc gaagtggata atgttcatca
     2161 acgacagaca acggatgtct atgaacatgc tttaacgatt accgcctggc agcagattta
     2221 cgatcagctg catccgggca agtttcatgg tgaatttacg gaaattctac tcgatgatat
     2281 tcaggttttt cgtgaataca ccggtctggc gctgcgtcag tcgtgcctgg tctggccgaa
     2341 ctcgttctgg tttggcattc cggcgacgcg cggtgagcag ggatttatcg gttcgcaatg
     2401 tctgggaagc gcggaaatcg ccacccgccc tggtggcact gaatttgaac tgagcacgcc
     2461 ggatgattac acgatcctgg gcgtggtgct ttctgaagat gtcatcaccc ggcaggctaa
     2521 ctttttgcat aacccggatc gggtattaca tatgctgcgt agccagtcgg cgctggaagt
     2581 gaaagagcag cataaagccg cgctgtgggg ctttgtccaa caggcgctgg cgacgttttg
     2641 cgagaacccg gaaaatctcc atcagcctgc agtgcgaaaa gtgctggggg ataatttgct
     2701 aatggcgatg ggggcgatgc tggaagacgc gcaaccaatg gtgacggcgg aaagcatcag
     2761 tcatcagagt taccgtagat tactttcccg cgcccgtgaa tatgtgctgg aaaatatgtc
     2821 tgagccggtg acggtgctgg acttgtgtaa tcaactgcat gtcagtcgcc gcacgctaca
     2881 aaacgcgttt cacgctattt taggcattgg cccaaacgcg tggctgaaac gcattcgcct
     2941 gaacgccgta cgccgcgaac tgataagccc gtggtcgcaa agcacaacgg taaaagacgc
     3001 cgccatgcag tggggattct ggcatctggg gcaatttgtc acggattacc agcagctgtt
     3061 tgccgagaag ccgtcgttga cgttgcatca gcggatgcgg gaatgggggt gagggagtta
     3121 cacccaatcc ctgaccttaa taaactcact taacgccgct tctgggctgc catcttttgg
     3181 ctgataatca tactcccagc gtaccagtgg cggcattgac atcaggatcg actcggtgcg
     3241 cccgccagtt tgcaggccaa acagagtgcc gcgatcccag accagattga actcgacata
     3301 acgaccgcga cggtagagct gaaaattgcg ctcgcgctcg ccgtaggcca tcgctttacg
     3361 tcgctctaca attggtaaat aagcgtcggt gtagcctttg cctaccgcct gcataaaggc
     3421 aaaacagtgg tcgaaatctg gcgtgttcag atcatcaaag aacagcccgc caataccgcg
     3481 ctgttcgttg cgatgtttga ggtagaagta atcgtcgcac cactttttgt aacggggata
     3541 aacgtcttca ccaaatggca ggcacaggtc acgggcggtg cggtgccagt gaatggcgtc
     3601 ttcttcaaaa ccatagaaag gggttaaatc gaagccgccg ccaaaccacc agacgggctc
     3661 tgcacccggt ttttcggcaa taaaaaaacg cacattcgcg tggctggtgg gaacatacgg
     3721 gttatgcgga tgcactacca gtgaaacgcc catcgcctcg aaactgcgcc cggcaagttc
     3781 cgggcgatga gcggtggcgg aagcaggcat cgcctcgccg tggacgtgag aaaagttgac
     3841 gcctgcctgt tcgaaaacac caccattacg caacacccga ctacgcccgc cgccgccagc
     3901 ttcgcgctgc caactatctt cgacaaattt tgcgccatcg acggcggtca gctgctgaca
     3961 aatcgtatcc tgaaggttga gcagaaactg tttaacctgg tgtgcgtcgg gtttcataac
     4021 ttatcgcttt ttcgaatgtg ctttctggtt gtcgaaccag tggaaataac tgatcacgcc
     4081 ttcagcaatc gctgtggcga ttttctgacg aaacgccgcc gtgcctaaca gccgctcttc
     4141 ttccgggttg gtgataaacg aggtttccac cagcaccgaa ggaaccgacg gcgatttcaa
     4201 caccacaaac gcggcttgtt cggtgttgcg gctgtgcagt ttatgcaccg gcttaatctt
     4261 tttcagaata tgcgagccaa gcgtcaggct gtttttaata gtatcggttt gcaccagatc
     4321 aaacagcact tgctgcaata ggtgatcctt gtcagtcgcc tttttaccgg caacttcatc
     4381 ggcgcggttt tcgcgttcag acaggtattt cgccattgcg ctacttgccc cacggttaga
     4441 gagggcaaat accgaagcac cggcagcttt cgggttggta aagccatcgg catgaattga
     4501 cataaacaga tctgcgccat gtttatgggc gatttcaacg cgatcgtaaa gtgggataaa
     4561 cgtatcgcca gaacgcgtta aacgcgcatc aatcccatga ttacgcaaaa tggaacggac
     4621 gtttttagca atcgccagca ccacatgttt ttctttcgaa ccgttgcgtc cgatcgctcc
     4681 ggtatcaatt ccgccgtggc ctggatcgag aacaacgaca cgtttgccgc cagatttttt
     4741 ggctttcggc ttgctgtgtc cgttgctggt ttttaaaggt tcgtctttgg cgatggcttg
     4801 cgacattcct gacaacgtca gggcagccaa accggctttc agcacctggc ggcgcgaagt
     4861 gagtgttttt agtggtttaa aagtgctcat acggcctgag ttgtaataat aaagttccag
     4921 atgttatatc gtatcgcgta atccgttacg acggtttgat gttgagaatt gttttacttt
     4981 tcatttcaat agttgacaac tccccattat gccacttttt caaccgattt tcgtcagata
     5041 ttggctaatt ctaccgttca cgccataatc agccttttaa cccgcaaaaa ggtaacgaat
     5101 accatggaga tacgcgtatt tcgccaggaa gatttcgaag aggttatcac cctttgggag
     5161 cgttgcgact tgctgcgtcc gtggaacgat ccggaaatgg acatcgagcg taagatgaac
     5221 catgacgtca gtttgttttt ggtcgctgag gtgaacggtg aagtggtcgg aacggtgatg
     5281 ggcggttatg acgggcatcg cgggtctgct tattatcttg gcgtgcatcc agagtttcgt
     5341 gggcgtggga ttgccaatgc gttgcttaat cggctggaga aaaagctgat tgctcgtggc
     5401 tgcccgaaaa ttcagatcaa tgtgccggaa gataacgaca tggtgctcgg aatgtatgaa
     5461 cgcctgggat atgaacacgc cgacatgctg agtctgggta agcgtttgat tgaagatgaa
     5521 gagtactgag ttccatcctg tccattatga tgcgcacgga cgcctgcgtt tacccttgct
     5581 cttctggctt gtgctattgc ttcaggcgcg aacctgggtg ctgtttatca ttgccggtgc
     5641 gtcgcgcgag cagggtactg cgctgctaaa tctgttttat cccgatcacg ataatttctg
     5701 gctggggttg attcccggta ttccggcggt gctggcgttt ttgttgagcg gtcggcgggc
     5761 ttcgtttcct cgcacctggc atgtgctcta ttttctgttg ctgttggcgc aggtggtttt
     5821 actttgctgg caaccgtggc tgtggctgaa cggtgaatcc gttagcggta tcggtctggc
     5881 gctggtagtg gcggatattg tggagttaat ctggctgctg accaatcgac gtttacgcgc
     5941 ttgttttaat gaagaaaaag aataacgcag aggtgcgctt tgtttatgcc ggatgcggcg
     6001 tgaacgcctt atccggccta caaaacatcg aaaattcaat atattgcagg agaaagtagg
     6061 cctgataagc gtagcgcatc aggcaatttt gtgtttgtca tcaaccttta acggcacttt
     6121 ttggtgaatt tgcactccaa gcaacgttat tgaataacca aaggaagtga catgaaatcg
     6181 ctgcgtttaa tgttatgcgc tatgccgttg atgctgaccg gctgttccac gatgtcgtca
     6241 gttaactggt cggccgctaa cccgtggaac tggtttggat cgtccaccaa agtgagcgag
     6301 cagggcgtgg gtgaattaac ggcgtccaca ccactgcaag aacaagccat tgctgatgcg
     6361 cttgatggcg attatcgcct gcgcagcgga atgaaaaccg cgaacggcaa cgtggtgcgc
     6421 ttttttgaag tgatgaaagg cgacaacgtg gcgatggtga ttaacggcga tcaaggcacg
     6481 atcagtcgca ttgacgtgct ggatagcgat attcctgctg acaccggtgt taaaatcggt
     6541 acaccgttta gcgaccttta cagcaaagca tttggcaatt gccaaaaagc tgatggtgat
     6601 gataatcgtg ccgtcgaatg taaagccgaa ggcagtcaac atattagcta ccagttcagt
     6661 ggggaatggc gtggtcctga agggttaatg ccttcggacg ataccctgaa aaactggaaa
     6721 gtcagtaaaa ttatctggcg gcgttaattt gcgtctgaac aaaccgccgc cgcgaaaaaa
     6781 cacgtaaaat agcgctcaac aatgccacgg attgcgtggc attcttattt tcaggaggaa
     6841 caatgtctca ggttcagagt ggcattttgc cagaacattg ccgcgcggcg atttggatcg
     6901 aagccaacgt gaaaggggaa gttgacgccc tgcgtgcggc cagtaaaaca tttgccgaca
     6961 aactggcaac ttttgaagcg aaattcccgg acgcgcatct tggtgcggtg gttgcctttg
     7021 gtaacaacac ctggcgcgct ctgagcggcg gcgttggggc agaagagctg aaagattttc
     7081 cgggctacgg taaaggcctt gcgccgacga cccagttcga tgtgttgatc cacattcttt
     7141 ctctgcgtca cgacgtaaac ttctctgtcg ctcaggcggc gatggaagcc tttggtgact
     7201 gcattgaagt gaaagaagag atccacggct tccgttgggt ggaagagcgt gacctgagcg
     7261 gctttgttga cggtacagaa aacccggcgg gtgaagagac gcgccgcgaa gtggcggtta
     7321 tcaaagacgg cgtggatgcc ggcggcagct atgtgtttgt gcagcgttgg gagcacaacc
     7381 tgaagcagct caaccggatg agcgttcacg atcaggagat gatgatcggg cgcaccaaag
     7441 aggccaacga agagattgac ggcgacgaac gtccggaaac ctctcacctc acccgcgttg
     7501 atctgaaaga agatggcaaa gggctgaaga ttgttcgcca gagcctgccg tacggcaccg
     7561 ccagtggcac tcacggtctg tacttctgcg cctactgcgc gcgtctgcat aacattgagc
     7621 agcaactgct gagcatgttt ggcgataccg atggtaagcg tgatgcgatg ttgcgtttca
     7681 ccaaaccggt aaccggcggc tattacttcg cgccgtcgct ggacaagctg atggcgctgt
     7741 aagcgtttct gattctatga ttaaaggcca gccagtaaca aaactgactg gcctttttat
     7801 tacttttgct tcaacgccgc atacacctga tcaactaccc aaccataagt tgcaatcggt
     7861 aactgaccgc tttcgaacat attgggattt ttttgtggat cggcaactgg cgaatggggc
     7921 ttgttgctta acatcacaat cgccatatga ttgaccggat cgataacggt tactgtcccg
     7981 gtccagccag tgtgaccgta ggtttgcggg cttgccagcg tgccaaacgt cggcgtcatg
     8041 gtggcattac cattcacgcg ccagccgagg ccaaaagtgg catcttcctt agagctggtg
     8101 gtgaacatct tcaccgtttc cgcactgaac agctgcacat cgccatagcc cccgccgttc
     8161 agcatcgttt gcattaacac cgcaatatcg ccggtattgg aaaacaaacc tgcgtgcccg
     8221 gaaacgccgc ccatcgaata aaaggctttt tcatcgtgca cctgacccca gagagtggag
     8281 gtgcggatat tcgggaaatg gatcacgcca tcgcgggtat tgccgttcaa ttccgtggcg
     8341 gcaatttgtt gcggtttaaa gcctttcagc agcgggttaa ataccgtatg tgtcaggccg
     8401 agcgggcgat aaatcgactc ttcaacatag cggtcaagcg gctgaccggt aaccgactcg
     8461 acgataaatc caagcagcat ataatcgaca tcgctgtaga tatgtttgct gccgggctga
     8521 tattccagcg gcgtgcgctt gatcatctcc agcgtctggc ctttatccta ggaatataac
     8581 gcgcccgcga ccgctttatt cgggtattgc ggatctgccg ggaaaccgcc gctgtgatgc
     8641 agcaggtcag aaatccgcag ggtgtttttg cctttaatgg tgtcatttgg actatcggca
     8701 aaccccggaa tatatttcgc aatccgatcg tcaggatgca gtttgccttc gctcatcagc
     8761 ttttgcaggg cgaagttcgt ggcgtacatt ttggtgtttg aggccaggtc atacagcgtc
     8821 ccggtggtgg ctttgacagg ctgttccatc aacacgctgc catcgtactt tttcgccgct
     8881 ccccaggctt tgcgatacac aatctgatta tctttaatga tcagcaggtt tacgccggga
     8941 taaccggcat caacttgctg gctaatccag cgatccatct ggttaagccg tttgacgtta
     9001 aaccctgctt tctctggcga gctttctgtc agaacagggt attttgcggc gctgacgcta
     9061 caactaacag ccagcagaga aagatagagc attgtccgtt tcatgatatc agtccagatt
     9121 gacgttacgg cagccaaaga gcgtggtgaa aataaacccg caaacccatg ccaccagaat
     9181 cccgccagca taaaccgcca tggccggaag gatgccttgt gcggaagtca tcagcggcag
     9241 cgctaccaga ccagacggcc caaaggcgct gtttaagccc atcggcagac cccaccaggc
     9301 tatcaggccg ataaacaaac cgcccgccgt accgcctaaa caggcggtga caaacggctt
     9361 catgcggggc agggtgacac cgtaaatcag cggttcacca acgcccagca ggccgggaat
     9421 aatcgccccg cgtacctgac tgcgtagcgc actgtgcggt tgcgaccgcc agtagagtgc
     9481 cagcgccgcg cccacctggc ccgcgcctgc cattgaaagg atgggaaata agctgttgaa
     9541 tccctggctg tccattaacg cgaggtaaac aggaataaag ccctgatgca cgccaaatac
     9601 cacggcgatc aggaacagcc cggctaaaac cgcacaaccg aacggattac tgttcaggtg
     9661 cataaacagc catgacatac cttcgaataa ccagccaccc agcggcataa tgatcaggta
     9721 cgcaagcgta gcggtgatca gcagggtgat taacgaggtc agcagcatgt cgagatcgtc
     9781 cggcataaag cggcgcacca tgccttcaat gcgggcgcag gcccacgcgg caatcagcac
     9841 gccgataata ttgccgcgcg gatcgatggg cagaccaaag aaatcgtgaa aaccggcgta
     9901 gtaaccggtg gttgcagcgg ggttataacc gagcaaaaag agtgcggcaa taattgcgcc
     9961 attgacgccc gtgccgccaa atgcctgggc ggcgttatag cccaccagaa tcaccaggaa
    10021 ggtgaacaaa cctttgctga acaccttcat aaaattcagc gcgtcgggta gcgtgccctg
    10081 agcatctgcc ggaacgtgca tcaccgtggc aattaacgtc gctatcccca gcagcagacc
    10141 ggcggcaata aaaccgggga tcagcggcgt gaagatggtg gcgaatttgg cgagaaattg
    10201 ttgcacgccg gaggtttgtt tggcttttaa ctgacgtttg ttctgggcgg cgatttctgc
    10261 ggcatcctgt accggtgcct cgcccagcag ctcgctcatc gcttttgcgg cacgatgcgc
    10321 tttaccaggt ccaaaaacga cctgcacctg gtcgctggtc aaaatgacgc tcttcacgcc
    10381 ttccagcgtt ttgatattgg gatcaaccag tgaactgtca tgtacaccca gacgcaggcg
    10441 cgtcatacag ttaccacaac tggcgatatt tcccggtccg ccgacacggg taagaatggt
    10501 gttcagaagt tcactgctga tctctttggc catgggttat tccttgtcta aaacctgacg
    10561 aataaagccg ccgtgttgat ccaggcgttt tttagcttct gcggcatcga gatttttcag
    10621 caccatcaca atggccgttt tacagttgcg ctcgcaggca attaacgccg cttccgcttg
    10681 ttcggcatta catccggtgg cgtttttaac gatattgacc tggcgcacat gcagtttttc
    10741 gttggtggcg accacatcga ccataaggtt gccgaacact ttgccggatt taatcatcag
    10801 cccggtggaa agcatattga gcaccagttt ctgcgctgta cctgctttca tccgcgaaga
    10861 accggtaaca acttcggcac ctacaatcgg tgtaatggca aactcagcgg tggttgaaac
    10921 ggcgctcccc ggattacagg aaattcccac tgtgcggcag ccgagctggc gtgcgtattc
    10981 cagtccggca atcacatacg gcgtgcgacc gctggcagca atgccaacca ccacatcctg
    11041 tgccgttaaa ttaatatttt tcagatcatt aacaccgcct tcccggctat cttccgcgcc
    11101 ttccaccgcg tgctgaatgg catattcgcc gccagcaatc aaaccaacca ccagacccgg
    11161 tttcacgccg taggtgggcg gacattcgct ggcatccaga atccccagac gaccggatgt
    11221 tcccgcaccg aggtaaatca gacgcccgcc gccgcttacc tgggcgtgga taacatcgat
    11281 cgccgcggcg atatccggca gtacgcgctc aacggcaagc ggtacggttt tatcttcatc
    11341 gttgataatc cggcacattt ccagcgttga tacgcggtca atttcagccg aggcggcgtt
    11401 cgagccttca gtaatcatct tttcaagttg catcggtggt gaccttacta tttacgatca
    11461 aataattgca gatgtatgga atcatatatc ctgaattgac agacttaaag gaatcattga
    11521 gtctacactc gcagagtgtg aagagcgtca taagaactta agcggaattt atgctgccag
    11581 cccaggagag tggaagatgt tgtacctgac gaaaataagc aatgcgggga gtgaattcac
    11641 cgaaaacgag caaaaaatcg ctgactttct gcaggccaac gtgagtgagc tgcaatccgt
    11701 ttcttcacgg cagatggcga aacagctcgg cattagccag tcgagcatag tgaaatttgc
    11761 ccaaaaactc ggcgcgcaag gatttactga attgcgtatg gcgttaatag gcgaatacag
    11821 tgccagccgg gagaaaacga ataccacggc gctgcacctg cacagttcga ttaccagtga
    11881 tgattcgctg gaagtgattg cccgcaaatt gaatcgcgaa aaagagctgg cgctggagca
    11941 aacctgtgcg ttgttcgact acgcgcggct gcaaaaaatc attgaggtca tcagtaaagc
    12001 accgtttatc cagataacgg gcctgggcgg atcggcgctg gtggggcgcg atctgtcgtt
    12061 caaactgatg aaaattggct atcgcgtggc ctgcgaagcc gacacgcacg tacaagccac
    12121 cgtttcccag gcgttgaaaa aaggcgatgt acaaatcgct atctcttaca gcggcagtaa
    12181 aaaagagatt gtcttgtgcg cagaagcggc acgaaagcag ggggcaacgg tgattgccat
    12241 tacttctctg gctgactctc cgctgcggcg gctggcgcat ttcacgctcg ataccgtttc
    12301 cggtgaaacc gaatggcgta gctcgtcgat gtctacccgc acggcgcaaa attctgttac
    12361 cgatttactg tttgttggtc ttgtgcaact caatgatgtg gcgtcattga aaatgattca
    12421 gcgcagcagt gagctaacac aacgcctgaa atgatgcata aagcagcgac tggattgaga
    12481 ttttcctgaa ttagtgagct gatccgcagc aatattttgt ttatcctgta ttttcagagg
    12541 gaatggagtg taacgctctg tattaacaag gagagcatta aaatgggtaa actcacgggc
    12601 aagacagcac tgattacggg cgcattgcag ggaattggcg aaggaattgc cagaactttt
    12661 gcacgtcatg gcgcgaacct aatcttgctg gatatctccc ctgagatcga aaagctggcg
    12721 gacgaactgt gtggtcgtgg tcatcgctgt acggcggttg tcgccgatgt gcgtgacccg
    12781 gcgtcggtag ccgcagctat caaacgcgcg aaggaaaaag aagggcgcat tgatatcctg
    12841 gtgaataacg caggcgtttg tcgtctgggc agtttcctcg atatgagcga tgacgatcgc
    12901 gatttccata ttgatatcaa tattaaaggc gtatggaacg tcacgaaggc ggtgctgccg
    12961 gagatgattg cgcgcaaaga tggtcgcatt gtgatgatgt cttcagtcac tggtgatatg
    13021 gtggccgatc ctggcgaaac ggcgtacgcc ttaacgaaag cggcgattgt tggcctgaca
    13081 aaatcgctgg cggtggagta cgcgcagtct ggtattcgcg ttaacgccat ttgcccggga
    13141 tacgtgcgca caccaatggc ggaaagcatt gcccgccagt cgaacccgga agatccagag
    13201 tcggtgctga ctgaaatggc gaaagcaatc ccgatgcgtc gcctcgccga tccgctggaa
    13261 gtcggcgaac tggcggcctt cctcgcatcg gatgaatcca gctatttaac tggtacacag
    13321 aatgtgattg atggcggcag cacactgccg gagacggtta gcgtcggtat ctgattcacc
    13381 tctgtttcct ccctgcatgt gtggggagga tttcgtcttg aaccaagttc ttattccctt
    13441 tttaacttcc aaatcaccaa acggtatata aaaccgttac tcctttcacg tccgttataa
    13501 atatgatggc tattagaaag tcattaaatt tataagggtg cgcaatggcc gttaacttac
    13561 tgaaaaagaa ctcactcgcg ctggtcgctt ctctgctgct ggcgggccat gtacaggcaa
    13621 cggaactgct gaacagttct tatgacgtct cccgcgagct gtttgccgcc ctgaatccgc
    13681 cgtttgaaca gcaatgggca aaagataacg gcggcgacaa actgacgata aaacaatctc
    13741 atgccgggtc atcaaaacag gtgctggcaa ttttgcaggg cttaaaaacc gacgttgtca
    13801 cttataacca ggtgaccgac gtacaaattc tgcacgacaa aggcaagctg atcccggctg
    13861 actggcagtc gcgcctgccg aataatagct cgccgttcta ctccaccatg ggcttcctgg
    13921 tgcgtaaggg caacccgaag aatatccacg actggaacga cctggtgcgc tccgacgtga
    13981 agctgatttt cccgaacccg aaaacgtcgg gtaacgcgcg ttatacctat ctggcggcat
    14041 ggggcgcagc ggataaagct gacggtggcg acaaagccaa aaccgaacag tttatgaccc
    14101 agttcctgaa aaacgttgaa gtgttcgata ctggcggtcg tggcgcgacc accacttttg
    14161 ccgagcgcgg cctgggcgat gtactgatca gcttcgagtc ggaagtgaac aacatccgta
    14221 aacagtatga agcgcaaggc tttgaagtgg tgattccgaa aaccaacatt ctggcggaat
    14281 tcccggtggc gtgggtcgat aaaaacgtgc aggccaacgg tacggaaaaa gcagcaaaag
    14341 cctacctgaa ctggctctac agcccgcagg cgcagaccat catcaccgac tattactacc
    14401 gcgtaaataa cccggaagtc atggacaaac tgaaagataa attcccgcag accgagctgt
    14461 tccgcgtgga agacaaattt ggctcctggc cggaagtgat gaaaacccac ttcaccagcg
    14521 gcggcgagtt agacaagctg ttagcggcgg ggcgtaactg atgtttgcag tttcatcaag
    14581 acgcgtgctg ccgggcttta ccttaagcct cggcaccagt ctgctgtttg tgtgcctgat
    14641 tttgctgctg ccgctctccg cgctggtgat gcagctggct cagatgagct gggcgcagta
    14701 ctgggaggtg atcaccaacc cacaagtggt cgcggcctac aaagtgacgc tgctgtcggc
    14761 gtttgtggca tcgattttta acggcgtttt cggtctgctg atggcgtgga ttttaacacg
    14821 ttatcgcttt ccgggccgca cgctgcttga tgcgctgatg gatttaccct ttgcgctgcc
    14881 aacggcagtc gccggtttaa cgctggcctc gctcttttcc gtaaacggtt tttacggtga
    14941 atggctggcg aagtttgata tcaaagtcac ctatacctgg cttggtattg cggtggcgat
    15001 ggcctttacc agcattccgt ttgtggtgcg taccgtgcag ccggtgctgg aagagttagg
    15061 cccagaatat gaagaagcgg cggaaacgct tggtgcaacg cgctggcaga gtttctgcaa
    15121 agtggtgctg ccggaacttt ctccagcgct ggtggcgggc gtggcgttgt cgtttacccg
    15181 tagtcttggt gagtttggcg cggtgatatt tatcgccggg aacatcgcct ggaagacgga
    15241 agtgacgtcg ctgatgattt ttgtgcgctt gcaggagttt gattacccgg cggcgagcgc
    15301 gattgcttcg gtgatcctcg cggcatccct gctgctgctg ttctcaatta acactctgca
    15361 aagtcgcttt ggtcggcgtg tggtaggtca ttaatggcgg aagttaccca attgaagcgt
    15421 tatgacgcgc gcccgattaa ctggggcaaa tggtttctga ttggcatcgg gatgctggta
    15481 tcggcgttca tcctgctggt gccgatgatt tatatcttcg tacaggcgtt cagcaaaggg
    15541 ctgatgccgg ttttacagaa tctggccgat ccggacatgc tgcacgccat ttggctgacg
    15601 gtgatgattg cgctgattgc cgtaccggtg aacctggtgt tcggcattct gctggcgtgg
    15661 ctggtaacgc gctttaactt ccccggacgc cagttactgc tgacgctact ggacattccg
    15721 tttgccgtat cgccggtggt tgccggtctg gtgtatctgc tgttctacgg ctctaacggt
    15781 ccgctgggcg gctggctgga tgaacataat ttgcagatta tgttctcctg gccgggaatg
    15841 gtgctggtca ccatctttgt gacctgtcct tttgtggtgc gcgagctggt gccggtgatg
    15901 ttaagccagg gcagccagga agacgaagcg gcgattttgc ttggcgcgtc tggctggcag
    15961 atgttccgtc gcgtcacatt gccgaacatt cgctgggcgc tgctgtatgg tgtggtgcta
    16021 accaacgccc gcgcgattgg cgagtttggt gcggtgtcgg tggtttccgg ctcgattcgc
    16081 ggcgaaacac tttcgctgcc gttacagatt gaattgctgg agcaggacta caacaccgtc
    16141 ggctccttta ccgccgccgc gctgttgacg ctgatggcga ttatcaccct gtttttaaag
    16201 agtatgttgc agtggcgtct ggagaatcag gaaaaacgcg cgcagcagga ggagcatcat
    16261 gagcattgag attgccaata ttaagaagtc gtttggtcgc acccaggtgc tgaacgatat
    16321 ctcactggat attccttctg gtcagatggt cgcgctgctg gggccgtccg gttccggaaa
    16381 aaccacgctg ctgcgcatta ttgccgggct ggagcatcaa accagcgggc atattcgctt
    16441 ccacggtacc gacgtgagcc gcctgcacgc acgcgatcgt aaagtcggtt tcgtgttcca
    16501 gcattacgcg ctgttccgtc atatgacggt gttcgacaat atcgcttttg gcctgacggt
    16561 gctgccacgt cgcgagcgcc cgaattccgc agccatcaaa gcgaaagtga caaaattgct
    16621 ggagatggtc cagcttgcgc atctggcgga tcgttatccg gcacagcttt ccggcggcca
    16681 gaaacagcgc gtggcgctgg cgcgcgcgct ggctgttgaa ccgcaaattc tcctgcttga
    16741 tgaaccgttt ggcgcgctgg atgcgcaggt gcgtaaagag ctgcgtcgct ggctgcgtca
    16801 actgcatgaa gagctgaaat tcaccagcgt gttcgtgacc cacgaccagg aagaagcgac
    16861 cgaagtagct gatcgtgtag tggtgatgag cctgggcaat atcgagcagg ctgatgcgcc
    16921 ggaccaggta tggcgcgaac cagcgacccg atttgtgctc gaatttatgg gcgaagtgaa
    16981 ccgcctgcag ggaaccattc gcggcgggca gttccatgtt ggcgcacatc gctggccgct
    17041 ggggtatacg cctgcgtatc aggggccggt ggatctcttc ctgcgcccgt gggaagtgga
    17101 tatcagccgc cgtaccagtc tcgattcgcc gctgccggta caggtactgg aagccagccc
    17161 gaaaggtcac tacacccaat tagtggtgca gccgctgggg tggtacaacg aaccgctgac
    17221 ggtcgtgatg catggcgacg atgccccgca gcgtggcgag cgtttattcg ttggtctgca
    17281 acatgcgtgg ctgtataacg gcgacgagcg tatcgaaacc cgagatgagg aacttgctct
    17341 cgcacaaagc gcctgatagg ttgagtgaat gttaaacgcc cggaggcgct tcccgcgatc
    17401 cgggcttttt aatggcaagg tttgtaacct gtagacctga taagacgcgc aagcgtcgca
    17461 tcaggcaaca ccacgtatgg atagagatcg tgagtacatt agaacaaaca ataggcaata
    17521 cgcctctggt aaagttgcag cgaatggggc cgaataacgg cagtgaagtc tggttgaaac
    17581 tggaaggcaa taacccggca ggttcggtga aagatcgtgc ggcactttcg atgatcgtcg
    17641 aggcggaaaa gcgcggggaa attaaaccgg gtgatgtgtt aatcgaagcc accagtggta
    17701 acaccggcat tgcgctggca atgattgccg cgcttaaagg ctatcgcatg aaattgctga
    17761 tgcccgacaa catgagccag gaacgccgtg cggcgatgcg tgcttatggt gcggaactga
    17821 ttcttgtcac caaagagcag ggcatggaag gtgcgcgcga tctggcgctg gagatggcga
    17881 atcgtggcga aggaaagctg ctcgatcagt tcaataatcc cgataaccct tacgcccatt
    17941 acaccactac cgggccggaa atctggcagc aaaccggcgg gcgcattacc cattttgtct
    18001 ccagcatggg aacaaccggc actatcaccg gcgtttcacg ctttatgcgc gaacaatcca
    18061 aaccggtgac cattgtcggc ctgcagccgg aagaaggcag cagtattccc ggcattcgcc
    18121 gctggcctgc ggaatatctg ccggggattt tcaacgcttc tctggtggat gaggtgctgg
    18181 atattcatca gcgcgatgcg gaaaacacca tgcgcgaact ggcggtgcgg gaaggaatat
    18241 tctgtggcgt cagctcaggc ggcgcggttg ctggagcact gcgggtggca aaagctaacc
    18301 ctggtgcggt ggtggtagcg atcatctgcg atcgtggcga tcgctacctc tccaccggag
    18361 tgtttgggga agagcatttt agccaggggg cggggattta agattattgc gcaggcaccg
    18421 ttttatccgt ctgcgcaatt agcgcatgta aaaaaggctg tgcgttctca tcgctcttac
    18481 cggggatctt cacaatatac ggcttcccgg taatcgatga cgacgaagca accttatcaa
    18541 taaactgctc ggcagtgtca atgcggttac gggtattgcc gagcttcaga cgcagatgag
    18601 aaaccgcttc atcgcaggta tgttcatcac cgttgcgcac aaatatcaaa tcctttttct
    18661 gtgataatcc ctccagcatg gcgttgatgc gggcttcttc atgggcagtt aacttcgcgt
    18721 aagcggggag tgtcattagt agtgtaatga ccagacaaat gattttcttc attgaattac
    18781 cttatccttg ttttgtaata gccgatttga ctgccagaat caggtaaagt ttcggttgga
    18841 atacgatgag gatcatcggc aaggagaaaa aattaaatga gtagtttgtt gttgtttaac
    18901 gataagagca gggcgctgca ggcggatatc gtcgccgtgc agtcgcaggt ggtttacggc
    18961 agcgtgggca acagcattgc cgtgcctgct atcaaacaga acggtctgaa tgtttttgcc
    19021 gtgccgacgg tattgctgag caatacgccg cattatgaca ctttctacgg tggtgcgatt
    19081 ccggatgaat ggtttagcgg ttatttgcgt gcgcttcagg agcatgatgc gctgcgccag
    19141 ctgcgcgctg taaccacggg ctatatggga acggcatcgc aaatcaaaat ccttgccgag
    19201 tggctgactg cgctacgcaa agaccatcct gacctattga tcatggtcga tccggtgatt
    19261 ggcgatattg atagcggaat ttatgtcaaa cctgaccttc ccgaggcgta tcgacaatat
    19321 ttactgccgc tggcgcaggg aattaccccc aatatctttg agctggaaat cctgaccggt
    19381 aaaaattgcc gcgatctcga cagtgccatt gctgccgcaa aaagtctgct ttcagacaca
    19441 ttaaaatggg tggtgattac cagcgcctcc ggtaatgaag aaaatcagga gatgcaggtg
    19501 gtggtggtca gtgccgacag cgtgaatgtc atttcccatt cacgggtaaa aaccgacctg
    19561 aaagggactg gcgacctgtt ttgtgctcag cttatcagtg gtttgctgaa agggaaggcg
    19621 ttaaacgatg cggtgcaccg tgcggggttg cgcgtactgg aagtgatgcg ctacacccag
    19681 cagcatgaga gcgatgaatt gattttgccg ccgctggcgg aagcataaaa aatggcgccg
    19741 at
//
LOCUS       DADMHM010000063        18799 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.064, whole genome shotgun sequence.
ACCESSION   DADMHM010000063 DADMHM010000000
VERSION     DADMHM010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 18799)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18799)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18799
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.064"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(32..2479)
                     /gene="glgP"
                     /locus_tag="JN125_001956"
     CDS             complement(32..2479)
                     /gene="glgP"
                     /locus_tag="JN125_001956"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen phosphorylase"
                     /protein_id="HAY8871750.1"
                     /translation="MNAPFTYSSPTLSVEALKHSIAYKLMFTIGKDPVVANKHEWLNA
                     TLFAVRDRLVERWLRSNRAQLSQETRQVYYLSMEFLIGRTLSNAMLSLGIYEDVQGAL
                     EAMGLNLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNI
                     VNGSQKESPDYWLEYGNPWEFKRHNTRYKVRFGGRIQQEGKKTRWIETEEILGVAYDQ
                     IIPGYDTDATNTLRLWSAQASSEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTY
                     SGRELRLRQEYFLVSSTIQDILSRHYQLHKTYDNLADKIAIHLNDTHPVLSIPEMMRL
                     LIDEHQFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYF
                     LKTLQEQYPNDTDLLGRASIIDESNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQSLF
                     ADFAKIFPGRFTNVTNGVTPRRWLAVANPSLSAVLDEHLGRNWRTDLSLLNELQQHCD
                     FPMVNHAVHQAKLENKKRLAEYIAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVI
                     TRYNRIKADPDAKWVPRVNIFGGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKV
                     VFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEML
                     DHVGADNIFIFGNTAEEVEELRRQGYKPREYYEKDEELHQVLTQIGSGVFSPEDPGRY
                     RDLVDSLINFGDHYQVLADYRSYVDCQDKVDELYELQEEWTAKAMLNIANMGYFSSDR
                     TIKEYADHIWHIDPVRL"
     gene            complement(2498..3931)
                     /gene="glgA"
                     /locus_tag="JN125_001957"
     CDS             complement(2498..3931)
                     /gene="glgA"
                     /locus_tag="JN125_001957"
                     /EC_number="2.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen synthase GlgA"
                     /protein_id="HAY8871751.1"
                     /translation="MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAF
                     PDIRRGVTDAQVVSRRDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFA
                     YTDNVLRFALLGWVGAEMASGLDPFWRPDVVHAHDWHAGLAPAYLAARGRPAKSVFTV
                     HNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYTRE
                     ITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAEN
                     KRQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVL
                     QEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTL
                     PLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRF
                     VQRQAMAMDFSWQVAAKSYRELYYRLK"
     gene            complement(3931..5226)
                     /gene="glgC"
                     /locus_tag="JN125_001958"
     CDS             complement(3931..5226)
                     /gene="glgC"
                     /locus_tag="JN125_001958"
                     /EC_number="2.7.7.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphate adenylyltransferase"
                     /protein_id="HAY8871752.1"
                     /translation="MVSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPA
                     VHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGWSFFNEEMNEFVDLL
                     PAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKG
                     ARCTVACMPVPIEEASAFGVMAVDENDKIIEFVEKPANPPSMPNDPSKSLASMGIYVF
                     DADYLYELLEEDDRDENSSHDFGKDLIPKITEAGLAYAHPFPLSCVQSDPDAEPYWRD
                     VGTLKAYWKANLDLASVVPELDMYDRNWPIRTYNESLPPAKFVQDRSGSHGMTLNSLV
                     SGGCVISGSVVVQSVLFSRVRVNSFCNIDSAVLLPEVWVGRSCRLRRCVIDRACVIPE
                     GMVIGENAEEDARRFYRSEEGIVLVTREMLRKLGHKQER"
     gene            complement(5244..7217)
                     /gene="glgX"
                     /locus_tag="JN125_001959"
     CDS             complement(5244..7217)
                     /gene="glgX"
                     /locus_tag="JN125_001959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycogen debranching protein GlgX"
                     /protein_id="HAY8871753.1"
                     /translation="MTQLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANGQE
                     HRYDLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPADGHRFNPAKLLIDPCARQIDG
                     EFKDNPLLHAGHNEPDYRDNAAIAPKCVVVVDHYDWEDDAPPRTPWGSTIIYEAHVKG
                     LTYLHPEIPVEIRGTYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNY
                     WGYNPVAMFALHPAYACSPETALDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPL
                     FSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFR
                     FDLAAVMGRTPEFRQDAPLFTAIQNCPVLSQVKLIAEPWDIAPGGYQVGNFPPLFAEW
                     NDHFRDAARRFWLHYDLPLGAFAGRFAASSDVFKRNGRLPSAAINLVTAHDGFTLRDC
                     VCFNHKHNEANGEENRDGTNNNYSNNHGKEGLGGSLDLVERRRDSIHALLTTLLLSQG
                     TPMLLAGDEHGHSQHGNNNAYCQDNQLTWLDWSQASSGLTAFTAALIHLRKRIPALVE
                     NRWWEEGDGNVRWLNRYAQPLSTDEWQNGPKQLQILLSDRFLIAINATLEVTEIVLPA
                     GEWHAIPPFAGEDNPVITAVWQGPAHGLCVFQR"
     gene            complement(7214..9400)
                     /gene="glgB"
                     /locus_tag="JN125_001960"
     CDS             complement(7214..9400)
                     /gene="glgB"
                     /locus_tag="JN125_001960"
                     /EC_number="2.4.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-alpha-glucan branching enzyme"
                     /protein_id="HAY8871754.1"
                     /translation="MSDRIDRDVINALIAGHFADPFSVLGMHKTTAGLEVRALLPDAT
                     DVWVIEPKTGRKLAKLECLDSRGFFSGVIPRRKNFFRYQLAVVWHGQQNLIDDPYRFG
                     PLIQEMDAWLLSEGTHLRPYETLGAHADTMDGVTGTRFSVWAPNARRVSVVGQFNYWD
                     GRRHPMRLRKESGIWELFIPGAHNGQLYKYEMIDANGNLRLKSDPYAFEAQMRPETAS
                     LICGLPEKVVQTEERKKANQFDASISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYA
                     KWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVIL
                     DWVPGHFPTDDFALAEFDGTNLYEHSDPREGYHQDWNTLIYNYGRREVSNFLVGNALY
                     WIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQV
                     SGAVTMAEESTDFPGVSRPQDMGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLT
                     FGILYNYTENFVLPLSHDEVVHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLL
                     FMGNEFAQGREWNHDASLDWHLLEGGDNWHHGVQRLVRDLNLTYRHHKAMHELDFDPY
                     GFEWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPVPRHDYRFGINQPGKWREILNTD
                     SMHYHGSNAGNGGTVHSDEIASHGRQHSLSLTLPPLATIWLVREAE"
     gene            complement(9673..10776)
                     /gene="asd"
                     /locus_tag="JN125_001961"
     CDS             complement(9673..10776)
                     /gene="asd"
                     /locus_tag="JN125_001961"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HAY8871755.1"
                     /translation="MKNVGFIGWRGMVGSVLMQRMVEERDFNAIRPVFFSTSQLGQAA
                     PSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLR
                     MKDDAIIILDPVNQDVITDGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVSVAT
                     YQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRSGELPVDNF
                     GVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQ
                     AFTIKLKKDVSIPTVEELLAAHNPWAKVVPNDREITMRELTPAAVTGTLTTPVGRLRK
                     LNMGPEFLSAFTVGDQLLWGAAEPLRRMLRQLA"
     gene            10968..11561
                     /gene="yhgN"
                     /locus_tag="JN125_001962"
     CDS             10968..11561
                     /gene="yhgN"
                     /locus_tag="JN125_001962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAAT family transporter YhgN"
                     /protein_id="HAY8871756.1"
                     /translation="MNEIISAAVLLILIMDPLGNLPIFMSVLKHTEPKRRRAIMVREL
                     LIALLVMLVFLFAGEKILAFLSLRAETVSISGGIILFLIAIKMIFPSASGNSSGLPAG
                     EEPFIVPLAIPLVAGPTILATLMLLSHQYPNQMGHLVIALLLAWGGTFVILLQSSLFL
                     RLLGEKGVNALERLMGLILVMMATQMFLDGIRMWMKG"
     gene            complement(11618..12958)
                     /gene="gntU"
                     /locus_tag="JN125_001963"
     CDS             complement(11618..12958)
                     /gene="gntU"
                     /locus_tag="JN125_001963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate transporter"
                     /protein_id="HAY8871757.1"
                     /translation="MTTLTLVLTAVGSVLLLLFLVMKARMHAFLALMVVSMGAGLFSG
                     MPLDKIAATMEKGMGGTLGFLAVVVALGAMFGKILHETGAVDQIAVKMLKSFGHSREH
                     YAIGLAGLVCALPLFFEVAIVLLISVAFSMARHTGTNLVKLVIPLFAGVAAAAAFLVP
                     GPAPMLLASQMNADFGWMILIGLCAAIPGMIIAGPLWGNFISRYVELHIPDDISEPHL
                     GEGKMPSFGFSLSLILLPLVLVGLKTIAARFVPEGSTAYEWFEFIGHPFTAILVACLV
                     AIYGLAMRQGMPKDKVMEICGHALQPAGIILLVIGAGGVFKQVLVDSGVGPALGEALT
                     GMGLPIAITCFVLAAAVRIIQGSATVACLTAVGLVMPVIEQLNYSGAQMAALSICIAG
                     GSIVVSHVNDAGFWLFGKFTGATEAETLKTWTMMETILGTVGAIVGMIAFQLLS"
     gene            complement(12962..13489)
                     /gene="gntK"
                     /locus_tag="JN125_001964"
     CDS             complement(12962..13489)
                     /gene="gntK"
                     /locus_tag="JN125_001964"
                     /EC_number="2.7.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417894.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HAY8871758.1"
                     /translation="MSTTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHP
                     RCNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGN
                     PNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPL
                     EGVVASTIEVIKKGK"
     gene            complement(13628..14623)
                     /gene="gntR"
                     /locus_tag="JN125_001965"
     CDS             complement(13628..14623)
                     /gene="gntR"
                     /locus_tag="JN125_001965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001693277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate operon transcriptional repressor GntR"
                     /protein_id="HAY8871759.1"
                     /translation="MKKKRPVLQDVADRVGVTKMTVSRFLRNPEQVSVALRGKIAAAL
                     DELGYIPNRAPDILSNATSRAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLAHYG
                     YKPEMEQERLESMLSWNIDGLILTERTHTPRTLKMIEVAGIPVVELMDSQSPCLDIAV
                     GFDNFEAARQMTTAIIARGHCHIAYLGARLDERTIIKQKGYEQAMLDAGLVSYSVMVE
                     QSSSYSSGIELIRQARREYPQLDGVFCTNDDLAVGAAFECQRLGLKVPDDMAIAGFHG
                     HDIGQVMEPRLASVLTPRERMGSIGAERLLARIRGESVTPKMLDLGFTLSPGGSI"
     gene            complement(14847..15542)
                     /locus_tag="JN125_001966"
     CDS             complement(14847..15542)
                     /locus_tag="JN125_001966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HAY8871760.1"
                     /translation="MIYLRKANERGHANHGWLDSWHTFSFANYYDPNFMGFSALRVIN
                     DDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQDSMGNKEQVPAGEFQIMSAGTGIRHS
                     EYNPSSTERLHLYQIWIMPEENGITPRYEQRRFDAVQGKQLVLSPDARDGSLKVHQDM
                     ELYRWALLKDEQSVHQIAAERRVWIQVVKGNVTINGVKASTSDGLAIWDEQAISIHAD
                     SDSEVLLFDLPPV"
     gene            complement(15665..16591)
                     /locus_tag="JN125_001967"
     CDS             complement(15665..16591)
                     /locus_tag="JN125_001967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709215.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HAY8871761.1"
                     /translation="MVINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQ
                     APIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKPFTPTL
                     AQAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIESGKLGEIVEVESHFDYYRPVA
                     ETKPGLPQDGAFYGLGVHTMDQIISLFGRPDHVAYDIRSLRNKANPDDTFEAQLFYGD
                     LKAIVKTSHLVKIDYPKFIVHGKKGSFIKYGIDQQETSLKANIMPGEPGFAADDSVGA
                     PNYVKESEVLTNLEILERGFEQASPSTVTLAN"
     gene            16923..17411
                     /gene="yhhY"
                     /locus_tag="JN125_001968"
     CDS             16923..17411
                     /gene="yhhY"
                     /locus_tag="JN125_001968"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HAY8871762.1"
                     /translation="MSEIVIRHAETRDYEAIRQIHAQPEVYCNTLQVPHPSDHMWQER
                     LADRPGIKQLVACIDGDVVGHLTIDVQQRPRRSHVADFGICVDSRWKNRGVASALMRE
                     MIEMCDNWLRVDRIELTVFVDNAPAIKVYKKYGFEIEGTGKKYALRNGEYVDAYYMAR
                     VK"
     gene            17648..>18799
                     /gene="hcp"
                     /locus_tag="JN125_001969"
     CDS             17648..>18799
                     /gene="hcp"
                     /locus_tag="JN125_001969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system tube protein Hcp"
                     /protein_id="HAY8871763.1"
                     /translation="MSNIVYLTVTGEQQGSISAGCGTSESTGNRWQSGHEDEIFTFSL
                     LNNINNTGLGSQFHGITFCKLIDKSTPLFINSINNNEQLFMGFDFYRINRFGRLEKYY
                     YIQLRGAFLSAIHHQIIENQLDTETITISYEFILCQHLIANTEFSYLALPENYNRLFL
                     PNSKNQTNNRFKTLNSKAIGRLLAAGGVYNGNIEGFRDTAEKLGGDAIKGYDQILNEK
                     TAGIAIATASILLTKRSNVDTYTEINSYLGKLRGQQKLLDGIDIIEIIYIKRPSKDLA
                     NLRKEFNKTVRKNFLIKLAKTSEASGRFNAEDLLRMRKGNVPLNYNVHHKLSLDDGGT
                     NDFENLVLIENEPYHKVFTNMQSRIAKGILVGESKITPWAIPSGSIYPPM"
BASE COUNT         4801 a         4970 c         4582 g         4446 t
ORIGIN      
        1 ctctttggcc ccgttctatt tattggtgaa cttacaatct caccggatcg atatgccaga
       61 tatgatcggc gtactctttg atagtacggt cagaagagaa gtagcccata ttggcaatgt
      121 tcagcatcgc ttttgcggtc cactcttcct gaagctcgta gagttcgtcg actttatcct
      181 gacaatcgac atagctgcga taatccgcca gaacctgata gtgatcgccg aagttgatca
      241 gcgaatcaac cagatcgcga tagcgacccg gatcttccgg actgaataca ccgctgccga
      301 tttgcgtcag cacctgatgc agctcctcat ctttctcgta gtattcacgc ggtttgtagc
      361 cctgacgacg cagttcttcc acttcttccg ctgtgttacc aaaaataaag atattgtcag
      421 caccgacatg atccagcatc tcgacattcg caccgtccaa cgtaccgata gtcagcgcac
      481 cgttaagcgc aaacttcatg ttactggtgc cggaagcttc cgtccctgcc agcgaaatct
      541 gttcagacag atctgccgcc ggaatgatca actgcgccag gctaacgctg tagttcggga
      601 tgaacacgac tttcagctta tcgccaatct gcggatcgtt gttgatcact ttcgctacgt
      661 cattgatcaa atgaataatg tgcttcgcca tgtaataggc cgaagccgcc ttaccgccaa
      721 aaatattcac gcgcggtacc cacttcgcat ccgggtcggc cttgatgcgg ttatagcggg
      781 taatcacatg caacacattc atcaattgac gtttgtattc gtgaatacgt ttgatttgta
      841 catcgaacaa cgcctttgga ttcaccacca cattcagctg ctgggcgata tactctgcca
      901 gacgcttttt gttctccagc ttcgcctgat gcacagcgtg attaaccatt gggaaatcac
      961 agtgttgttg cagctcatta agcaggctaa ggtcggtgcg ccagttacgg cccaggtgtt
     1021 cgtccagcac ggctgaaagc gatgggttcg ctaccgctag ccagcgacgc ggcgtcacac
     1081 cgttggtgac gttggtgaaa cgacccggga agattttcgc aaagtcggca aacaacgatt
     1141 gcaccatcag attagagtgc agttccgata caccgttaac tttgtggctc acaacaaccg
     1201 ccagccaggc catacgcaca cgacgaccgt tggattcatc aatgatcgac gcccgtccca
     1261 gcagatcggt atcgttcgga tactgttcct gcaaggtttt caggaaatag tcgttgattt
     1321 caaagatgat ctgcaggtga cgcggcagaa ttttacccag catatcaacc ggccaggttt
     1381 ccagcgcctc gctcatcagc gtgtggttag tgtaggagaa gacctgacaa cacacctcaa
     1441 acgcgtcgtc ccagctaaat tggtgctcat cgatcagcag acgcatcatc tcaggaatcg
     1501 acagtaccgg atgggtatca ttgagatgaa tcgcgatttt atccgccagg ttatcgtagg
     1561 ttttatgcaa ctgataatgg cggcttaaaa tgtcctgaat ggtcgaggaa accagaaagt
     1621 attcctgacg caggcgcagc tcacgcccgg agtaggtgga gtcatccgga tacagtacgc
     1681 gagatacgtt ctcggagtgg tttttatctt ccactgccgc gaagtagtca ccttggttga
     1741 atttaccgag gttaatttcg ctactggctt gcgcactcca caaacgcaac gtgttggtcg
     1801 cgtcggtgtc gtaaccaggg attatctgat cgtaagcgac tcccagaatc tcttcggttt
     1861 caatccagcg cgttttttta ccttcctgct gaatgcgacc accaaaacgg actttatagc
     1921 gcgtgttgtg gcgtttgaat tcccacgggt taccgtattc cagccagtag tctggcgact
     1981 ctttctggct accgttaacg atgttctgct tgaacatacc gtagtcatag cggatgccgt
     2041 aaccgcgccc cggcaaccct aacgtcgcca gagaatcaag gaagcaagcc gccagacgtc
     2101 ccaggccacc gttaccgagg cctgggtcat tttcttcatc aatcagctct tcgagattta
     2161 accccatcgc ttccagtgcg ccctgtacat cttcgtaaat tcctagcgac aacatggcgt
     2221 tggagagcgt acggccaatc aaaaactcca tcgacaggta gtaaacctga cgagtttctt
     2281 gcgacaactg ggcacggttt gaacgtaacc agcgctccac gagacgatcg cgcacagcaa
     2341 ataacgttgc gttcagccat tcatgtttat tggcgacgac cgggtccttt ccaatcgtaa
     2401 acatcagctt gtaagcgata gagtgcttaa gagcttctac gctaagcgtg ggcgatgaat
     2461 atgtaaacgg agcattcata taggcgtttc ctgaaaacta tttcaagcga tagtaaagct
     2521 cacggtacga cttcgccgcg acctgccagc taaaatccat tgccatagcc tgacgttgca
     2581 caaaccgcca cagtgaagga cgagaccaca gtacaaaagc acgtcgaata gcccgtaaca
     2641 gcgaccaggc attactatct tcaaagacaa acccactggc gacgccatct gcaaggttct
     2701 caagagaaca gtcagaaacc gtatcagcaa gcccaccggt gcgccgcact aacggcagcg
     2761 taccgtactt caatccataa agttgcgtta agccgcacgg ttcaaaacgg ctgggcacca
     2821 gaatgacgtc cgcgccgccc ataatgcgat gcgaaaatgc ttcgtgatag ccaatctgaa
     2881 cgcccacctg gccggggtat tccgctgccg ccgcaaggaa accttcctgc agcaccggat
     2941 cgcccgcgcc gagtagcgcc agctgcccgc cctgctccag aagacccggt aaggcttcca
     3001 gcaccaggtc gagacctttc tggctggtca gacggctcac cactgcaaaa agcggcactt
     3061 tatcgtcaac cttaagcccc attgcgattt gtaactggcg cttattttcc gctttatctt
     3121 ccaacgtatc gcgggtgtaa cgcgaggcca acagtaagtc cgtctctgga ctccagattt
     3181 tctcgtccac gccgttcagt acgccggaaa gacgcccttc acggtgacgc tgttgcaaca
     3241 gaccttccat accgtaggca aactgcggtt cggtgatctc gcgagtgtag gttggactga
     3301 ccgccgtaat gtgatcggca tagtacagac cggccttcag gaaagagatt tgtccgttga
     3361 attccagccc atgaatatta aagaatgacc atggcaattg gatgtcattc atgtgatgtg
     3421 cataaaacat gccttgatag gccaagttgt gcacagtaaa caccgacttc gccggacgcc
     3481 cgcgcgccgc cagatacgca ggcgcaaggc ctgcatgcca gtcgtgcgca tgcaccacat
     3541 caggacgcca gaatgggtca agcccgctgg ccatttctgc cccaacccac cccagcagcg
     3601 caaaacgcaa tacgttgtcg gtataggcaa ataagttggt atcgtgatac gggcttcccg
     3661 gacgatcata gagatgcggc gcgtcaatca ggtatatgcc aaccccgttg taatgaccga
     3721 acaacagcgt gatatgtccg gcgaaggtat cacgacggga tactacctgc gcatcggtca
     3781 cgccacggcg aatatcggga aatgcaggca acagtacgcg agcgtcaacg ccgtctgcga
     3841 tttgtgctgc gggtaatgcc ccaataacat cagccagacc gccggtttta agcagcggga
     3901 acatctctga acatacatgt aaaacttgca ttatcgctcc tgtttatgcc ctaacttccg
     3961 tagcatttcg cgcgttacca gcacgatgcc ttcttctgaa cgatagaaac gacgtgcatc
     4021 ttcctctgcg ttttcaccaa tcaccatgcc ttccgggata acacaagcac gatcgatgac
     4081 gcagcggcgc agacggcacg agcgacctac ccatacttcc ggtaacaata cggcggaatc
     4141 aatgttgcag aatgaattca cgcgaacgcg cgagaacaga acggactgca ccaccaccga
     4201 accggagatc acacaaccgc cggataccag tgagttaagg gtcatcccgt ggctaccgga
     4261 gcgatcctgc acgaatttcg ctggcggtaa tgattcattg taggtgcgaa ttggccaatt
     4321 gcgatcgtac atatccagtt ccggcaccac agaggccaga tcgagattcg ctttccagta
     4381 agctttcagc gtacccacat cgcgccagta cggctcggca tccgggtcgg attgtacgca
     4441 agagagcggg aacgggtgcg cataggccag accggcttcg gtgatcttgg gaatcaaatc
     4501 tttgccaaag tcgtggctgg agttctcatc acgatcgtct tcttccagca gttcatacag
     4561 atagtcggcg tcaaagacgt agatacccat actcgccaga gatttgctcg gatcgttcgg
     4621 cattgacggt gggttagcag gtttttcaac gaattcgata attttatcgt tctcatcaac
     4681 cgccataacg ccaaatgcgg aggcttcttc aatcggtact ggcatacaag caacggtgca
     4741 acgtgcgcct ttttcgacgt gatcgataag catacgcgag tagtcttgct tgtagatatg
     4801 gtcgcccgcc aggatcacca cgtattccgc tttataacgg cggataatgt cgaggttttg
     4861 ggtgaccgca tctgcggtgc cgcgatacca gttttcccct ttcattctct gctgtgctgg
     4921 cagcagatcg acaaactcgt tcatttcttc attgaagaat gaccagccgc gctgaatgtg
     4981 ctgcaccaga gtgtgggact ggtactgggt gatcacgccc atacgacgga tcccggagtt
     5041 gatgcagtta gacagcgcaa agtcgataat gcggaactta ccgccgaagt gtacggccgg
     5101 ttttgctcgc ttattggtta aatccttcag gcgggtacca cgtcctcccg ccagtatcag
     5161 ggcaacagat ttcaatggca gctggcgcgc caacattaag tgatcgttct tctctaaact
     5221 aaccatgact aactcctttt ttatcatctc tggaacacac acaatccgtg tgcaggtccc
     5281 tgccagacag ccgtaatcac tgggttatcc tctccagcga atgggggaat ggcgtgccac
     5341 tccccagcag gtaaaacaat ctctgttacc tcaagcgtgg cgttaattgc gatcaaaaag
     5401 cgatccgaga gcagaatttg cagctgtttc ggcccgtttt gccactcatc cgtgcttaaa
     5461 ggttgagcat atcgatttag ccaacggaca ttgccatcgc cttcttccca ccagcgattc
     5521 tccaccaaag cgggaatgcg cttgcgcaga tggattaacg cggcggtaaa tgcggttaaa
     5581 ccactgcttg cctgcgacca gtccaaccag gttaattggt tatcctgaca gtaggcattg
     5641 ttattgccat gctggctgtg accatgttcg tcaccggcca gtaacatcgg cgtaccctgg
     5701 gagagcaaca acgttgttaa caaggcgtga atactgtcgc gccgccgttc aaccaggtca
     5761 agagaaccgc ctaacccttc tttaccatga ttgttactgt aattgttgtt ggtcccgtcg
     5821 cgattttctt ctccgtttgc ttcattgtgt ttatggttga agcaaacgca gtcgcgaagc
     5881 gtaaaaccgt catgcgcagt gacgagatta atcgcggcac tcggcagacg accattacgt
     5941 ttaaaaacat cgctggaggc agcaaaacgc ccggcaaacg cccccagagg caaatcataa
     6001 tgtagccaga aacgacgggc agcatcgcgg aaatgatcgt tccactcggc aaacagcggc
     6061 gggaaatttc ccacctgata accaccaggg gcgatatccc acggttcagc aattaacttc
     6121 acctgcgaga gcaccgggca gttctggata gcggtaaaca acggcgcatc ctgacggaac
     6181 tctggcgtac ggcccatgac tgccgccaga tcaaagcgga aaccatcgac gtgacaggtt
     6241 tctacccaat aacgcaggca ggcgctggca taatccacca ccgccggatg actcaaattg
     6301 agcgtgttgc cgcaaccggt ccagttgtga taatcgccgt cttctcttat ccaataatag
     6361 ctacggttat cgatcccacg cagtgagaat aacgggccgt cgaggtccag ttccgcacta
     6421 tggttgagca cgatatcaag aatgacttcg atacccgctt tatgcagtgc tttgattgca
     6481 tcgcgaaact catccagcgc cgtttctggc gagcaggcat acgccggatg cagcgcaaac
     6541 atcgccaccg ggttgtaacc ccagtagtta cttagcccca tgcgttgcag acgtggttca
     6601 ctggcaaact gcgccactgg cagcagttcc agcgcggtaa tgcccaattg tttcaaatag
     6661 ttgatcatca ccggatgccc gagggcttta taagtgccac ggatctcgac cggaatctcc
     6721 gggtgcaagt acgttaatcc tttgacatgg gcttcataaa tgatggtgct gccccacggc
     6781 gtgcgcggcg gggcatcatc ttcccagtca tagtgatcaa ccaccactac gcatttcggc
     6841 gcaatggcgg cgttgtcgcg atagtcaggt tcattatgac cggcgtgcag cagcgggtta
     6901 tctttaaact ccccgtcaat ttgccgcgcg caaggatcaa tcaacaactt cgccgggtta
     6961 aagcgatgcc catcggcggg ttgccagggg ccatgaacgc gataaccata acgcaaaccc
     7021 gggcgcgcat ccggcagata accgtgccaa atgtcgccac tgtgccctgg caagtcatag
     7081 cgatgttcct ggccattggc gtcaaagaca cacagttcta cccgctcggc atgagcggag
     7141 aaaagtgtga agttgacgcc ctgaccgtcg taatgcgcgc cgaggggagc gggtttgcca
     7201 atggcgagct gtgtcattct gcctcccgaa ccagccagat agtggccagc ggtggtagtg
     7261 tcaggcttag tgaatgctga cgaccgtggc tggcaatctc atcgctgtgt accgtgccgc
     7321 cattgcctgc attactgccg tgatagtgca tggaatcggt attgaggatt tcacgccatt
     7381 tgcctggctg attaatgccg aagcgataat catgacgcgg caccggcgta aagttactgg
     7441 caacgataat ttcgttaccc tctttatcgc gacgcacaaa gatcagcacc gagcgttctt
     7501 tgtcatccac caccagccat tcaaagccgt acgggtcaaa atccagttca tgcattgctt
     7561 tatggtggcg gtaggtgagg ttcagatcgc gcaccagacg ctggacaccg tggtgccagt
     7621 tatcgccacc ttccaacaga tgccagtcga ggctggcgtc atggttccac tcacggccct
     7681 gggcaaattc gttccccatg aacagcagtt tcttgcccgg gaatgcccac atccagccat
     7741 agtaggcgcg caggttagcg aatttctgcc atgcgtcgcc cggcatgcgg tcgagaatcg
     7801 attttttacc gtggaccact tcatcatgcg acaacggcag gacgaagttt tcagtgtagt
     7861 tgtagagaat cccgaaggtg agtttatcgt gatgatactg acgataaacc gggtcgagct
     7921 tcatgtagtc cagggtgtca tgcatccagc cgaggttcca cttgtaccag aagcccagac
     7981 cgcccatatc ctgcggacga gaaacgccag ggaaatcggt agactcctca gccattgtca
     8041 ccgcaccgga aacctgctca ccaagaatac ggttggtatt acgcaagaat tcaatcgctt
     8101 caagattctc gcgcccgcca aattcgttcg ggatccactc cccctcttta cggctgtagt
     8161 cgcgataaat cattgacgcc accgcatcga cgcgcagcgc atcaatacca aaacgttcaa
     8221 tccagtaaag cgcgttaccg acgaggaagt tactgacttc acggcgacca taattgtaga
     8281 tcagcgtatt ccagtcctga tgatagcctt cgcgcggatc gctgtgttca tacaagttcg
     8341 tgccatcaaa ttcggcaagc gcaaagtcat cggtcgggaa gtggcctggc acccagtcga
     8401 gaatcacgtt cagacccgct gcgtgtgcgg catcaatgaa ataacggaag tcgtcgcgag
     8461 taccaaaacg gcgggttggt gcatacaggc cggttggctg ataaccccaa ctgccatcga
     8521 agggatgctc gttaatgggc agtagttcga ggtgggtaaa gcccatccat ttagcataag
     8581 gcaccagttg atcggccagc tcgcggtagc tcaaccagaa attgttatcg gtgtggcgac
     8641 gccaggagcc caggtgaact tcataaatag agattgacgc atcaaactga ttcgcttttt
     8701 tgcgctcttc agtctgtaca accttttccg gcagcccgca aataagagac gcggtttccg
     8761 ggcgcatttg cgcttcgaag gcataagggt cggacttcag acgcaagttg ccattggcat
     8821 caatcatctc gtatttatag agctgaccgt tatgcgcccc agggataaac agttcccaaa
     8881 tgccgctctc tttacgcaga cgcatcgggt gacggcgacc gtcccagtag ttgaattgcc
     8941 caaccaccga gacccgacgg gcgtttggag cccaaacaga gaaacgcgta cctgtgacgc
     9001 catccatagt atctgcatgc gcgcctaagg tttcatacgg gcgcaggtga gtaccttcag
     9061 ataatagcca ggcatccatt tcctggatta gcgggccaaa acggtaagga tcatcaatca
     9121 ggttttgctg accatgccag acaacagcca actgatagcg gaaaaaattc ttacgtcgcg
     9181 gaatgacacc gctaaagaat ccccgtgagt caagacactc cagttttgcg agtttgcgcc
     9241 cggttttcgg ttcaatcacc cacacatcgg tagcgtcggg taaaagggca cggacttcca
     9301 gtcccgcggt ggttttatgc attcccagta cggaaaaagg atccgcaaaa tggcctgcaa
     9361 ttagcgcgtt aatcacgtct ctatcgatac gatcggacat gcttgtcttc ctgttttatt
     9421 gtgtcacccc atccaattgg atttttgact tctggttgtg acattttttt gacctgaacg
     9481 gcgcagcact ctgtgcatcc tctctgcgtc gtcctcactt caggtaaggc tgtgaatact
     9541 catgtattca gccaccctta aagaatagcc aatgctctat ttaactcccg gtaaatcatg
     9601 aaacatctgc gcttactcct gtattacgca ctaacagggg cggcatcgcg ccccagattt
     9661 aatgaataaa gattacgcca gttgacgaag catccgacgc agcggctccg cggcccccca
     9721 cagcagctgg tcacccacgg taaaggctga caggaactcc ggtcccatat tcagcttacg
     9781 caggcggcct accggcgtgg tcagcgtgcc ggtaacggca gctggggtta gctcacgcat
     9841 agtgatttcc cgatcgttcg gaacgacttt cgcccacgga ttgtgcgcag ccagcagttc
     9901 ttcgacggtc ggaatagaca catctttttt caatttaata gtgaatgcct ggctgtggca
     9961 gcgcaatgcc ccgacacgca cacataaacc atctaccgga attacggaag atgtgttgag
    10021 gatcttgttg gtttccgcct gccctttcca ctcttcgcgg ctctgaccgt tatcgagctg
    10081 tttgtcgatc cacggaatca ggctacccgc cagcggcacg ccaaagttat ccaccggcag
    10141 ctcaccgcta cgggttaagg ttgtgacttt gcgttcgata tcgagaatag cagaggacgg
    10201 ggtcgcgagt tcatctgcca catggccata cagatggccc atctgggtta ataactcacg
    10261 catatgtcgc gcaccaccgc cggaagcggc ctggtaggtt gcaacggaca cccaatcaac
    10321 aagatcattg gcgaataaac cacccaacga catcaacatc aggcttacgg tacagttacc
    10381 gccaacaaaa gtcctgatgc cattatttaa tccgtcggta atgacgtcct gattgacggg
    10441 gtcaagaatg atgatggcgt catctttcat gcgcagagac gatgctgcgt caatccagta
    10501 accttgccat ccgctttcac gaagctttgg atagatttcg ttggtataat cgccgccctg
    10561 acaggtcaca atgatatcga gggcctttag cgcctccaga tcaaaggcat cctgaagtgt
    10621 gccagtggtt ccgccaaaag acggcgcagc ctggccaagc tgagaagtag aaaagaagac
    10681 agggcgaatg gcgttgaagt cgcgctcttc aaccatgcgt tgcatgagaa cggagccgac
    10741 cataccgcgc cagccgataa aaccaacatt tttcataagc gttttttcct gcaaagatgt
    10801 gtgctgtata aatgtgccgg tctcctcttg gcacatcttt caccatacaa aaagcagcca
    10861 aagtcgcaag tgaaattaat caatgatagc gaagccatca gtaatgcgac ttatcctgct
    10921 ttgttagcac acagaaagtc cgcggcaatt atcagggaat ttgagttatg aatgaaatca
    10981 tttctgcagc agttttattg atcctgatta tggatccgct cggaaacctg cctattttca
    11041 tgtccgtact gaaacatact gaaccgaaaa gacggcgggc aatcatggtg cgagagttgc
    11101 ttattgctct cctggtgatg ctggtgttcc tgtttgcggg tgagaaaatt ctggcatttc
    11161 tcagcctgcg agcagaaacc gtctccattt ctggcggcat cattctgttt ttaatcgcca
    11221 ttaagatgat tttccccagc gcttcaggaa atagcagcgg gcttccggca ggtgaagagc
    11281 catttatcgt gccgttggca attccgttag tcgccgggcc gactattctc gccacgctga
    11341 tgttgttgtc tcatcagtac ccgaatcaga tgggacatct ggtgattgct ctgctgctgg
    11401 cctggggcgg cacctttgtc atcctgctac agtcttcgct atttttacgt ctgctgggcg
    11461 agaaaggggt gaacgcactt gaacgcctga tgggattgat tctggtgatg atggcaaccc
    11521 agatgttcct cgacggcatt cgaatgtgga tgaaggggta acgaggagag tttttcgaaa
    11581 agaacccggt agcgtcacaa ctaccgggcg aacaaactta actcaacagc tggaacgcaa
    11641 tcatcccaac gatggcacca acagtgccga ggatggtttc catcatggtc caggttttca
    11701 gcgtttcggc ttcggtcgcg ccggtaaatt taccgaacaa ccagaaaccg gcgtcgttaa
    11761 cgtggctgac aacaatcgaa ccaccagcga tacaaatcga cagtgccgcc atttgcgcac
    11821 cggagtagtt cagttgttca atgaccggca tcaccagccc caccgccgtt aaacaggcaa
    11881 cggtggcaga cccctgaatg atgcgcactg cagcggccag cacgaagcag gtgatagcaa
    11941 tcggcaggcc catgccggtt aacgcttcgc ccagtgccgg acctacgcca gagtcaacca
    12001 gcacctgttt gaacacgccg cctgcaccaa tcaccagcag aatgatcccc gccggttgta
    12061 gcgcgtgacc gcaaatctcc atcactttgt cttttggcat gccctgacgc attgccaggc
    12121 cataaatcgc taccagacaa gcaaccagaa tcgcggtaaa tggatgacca ataaactcga
    12181 accattcgta agcagttgat ccttctggca caaaacgagc ggcaatggtt ttcagcccca
    12241 ccagcaccag cggcaacagg atcagcgaca ggctgaatcc gaaggacggc attttgcctt
    12301 cgccgagatg cggttcgctg atgtcgtcag gaatatgcaa ctccacgtaa cggctgatga
    12361 aattacccca cagcggcccg gcaataatca ttcccggaat tgccgcacac agaccaatca
    12421 ggatcatcca gccaaagtcg gcattcatct gcgatgccag cagcatcggc gctggtccag
    12481 gcaccagaaa tgccgccgct gccgccacgc ctgcgaataa tgggattacc agcttcacca
    12541 ggttcgtacc ggtgtggcgc gccattgaga aagcaacgct aatcagcaga actatcgcca
    12601 cttcaaagaa cagcggtagc gcacagacca accccgcaag gccgatggca taatgctcgc
    12661 ggctgtgacc gaaggatttg agcattttga cggcaatctg atcgactgcg ccggtttcat
    12721 gtaagatctt gccaaacata gctcccaggg cgacaaccac cgccaggaag ccgagggtgc
    12781 ctcccatccc tttttccatc gtcgctgcga ttttatcgag cggcataccg gaaaaaaggc
    12841 cagcccccat ggacaccacc atcaaagcca ggaaagcgtg catacgcgcc ttcatgacta
    12901 aaaacagcag cagtaaaaca gaccctactg ctgttaaaac aagcgttaat gtagtcacta
    12961 cttatttgcc ttttttaata acctcaatgg tgcttgccac aacaccttcc agcggttgat
    13021 cgatatccac caccagtaca tcggtttcgt ccgcacccgg ctcctgcagc gtttcaaact
    13081 gcgtcaccaa catttgggtt ttaaagaaat ggcctttgcg cgctttcaag cgactttcaa
    13141 tcacatcaaa atcgcctttc aggtagatga aagagagatt cggattacct tcacgcagca
    13201 agtcgcgata gtgctttttc agtgcagaac agacgatcag cgacacttta ttggtgcgct
    13261 gcatagcaaa cgcggcgtcg ttcagcgcct gcaaccaggg tttgcgatcg tcgtcattca
    13321 gcggttcgcc agacgccatt ttttcgatat tgcaccgtgg atggaggaaa tcgccatcaa
    13381 gaaacgcggc atgaagttga tgcgccactt cactggcgac cgcagatttg ccgctgcccg
    13441 atacgcccat caagacgtaa atgtggtgat catggttagt cgtgctcaaa gtggtgcccc
    13501 cacaatacaa gaattaaaaa tgttacgggt aactgttatc ggtaacattg tccagccgga
    13561 caatatcaga agcaatatcc atccgtgcct taagtgtata agtgtgagct acttcaaatt
    13621 tgtaggctta aatagatccg cccggtgaca aggtgaaacc taaatctaac attttcggtg
    13681 tcacagattc gccacgaata cgcgccagca ggcgttcagc gccaatactg cccatccgct
    13741 cacgcggcgt cagcacgctc gctaaccgcg gctccatcac ctggccaatg tcatgaccgt
    13801 ggaaaccggc aatcgccata tcgtcaggaa ccttcaatcc cagacgctga cattcaaacg
    13861 ccgcgccgac cgccaggtca tcgttggtac agaacacgcc atccagctgc ggatattccc
    13921 gccgcgcctg gcgaatcagt tcaataccgg aagagtaaga agaagattgc tcaaccatca
    13981 cgctatacga caccagacct gcatccagca tcgcctgttc gtatcccttc tgtttgatga
    14041 tagtacgttc gtcgagacgc gcgccgagat aggcaatgtg gcaatgcccg cgagcaataa
    14101 tggcggtggt catctggcgt gccgcttcaa agttatcaaa accgacggcg atatcgaggc
    14161 acggcgactg gctgtccatg agttccacca ccgggatccc cgccacttca atcatcttta
    14221 aggtgcgcgg cgtgtgggta cgttcggtga ggatcagtcc gtcgatattc catgagagca
    14281 tggattcgag acgttcttgc tccatttccg gtttataacc gtagtgagcc agcatggtct
    14341 gataaccgtg cgcgtcggtg acgctttcga ttccgcgtaa tacttccgcg aaaacctggt
    14401 tggtgagaga aggtaacagg acgccaatcg cccggctggt ggcgttagag aggatatcgg
    14461 gcgcacgatt gggaatatag cccagttcat caagagcggc ggcaatcttg ccgcgtagag
    14521 cgacggaaac ctgctccggg ttgcgtaaaa aacggctgac cgtcattttg gtcacgccta
    14581 cacggtcagc cacatcctga agtacgggtc ttttcttttt catcgtcctg aaggtacaaa
    14641 agagatagat tctcttagtt taacacggac gcatcagaac cttcccgggg aaaacagtgc
    14701 ttgtttacaa ttattagata tacactaaat caattgcatc gcattgtgct aacgacgcgg
    14761 caaaaccccg aaagcgtgca tcagcacgcg gccggagcga gcgaggaagc ctgcaaaaag
    14821 gcaggcttca aagatgccgt tgagttttaa accggcggca gatcgaacag taacacttcg
    14881 ctgtcgctat ccgcatggat ggagattgcc tgctcatccc agattgccag accatcgctg
    14941 gtcgaggctt tcacgccgtt aatggtgaca ttgcctttca ccacctggat ccagacgcgg
    15001 cgttcagcgg caatctgatg caccgactgc tcatctttca gcaacgccca gcggtacagt
    15061 tccatatcct gatgcacttt caatgaacca tctcgcgcat ccggcgagag caccagctgt
    15121 ttgccctgta cggcatcgaa gcgacgctgt tcataacgcg gcgtaatacc gttttcttca
    15181 ggcatgatcc agatctgata cagatgcaga cgctcggtgc tgcttgggtt gtactctgag
    15241 tgacgaatac ccgtacccgc actcataatc tggaactcac ccgccggaac ctgctcttta
    15301 ttgcccatgc tgtcctgatg ctcaacagta ccttccagca cgtaggtcaa aatttccata
    15361 tctttatgcg ggtgagtgcc gaagccctgc cctgcttcaa tcacgtcgtc gttaatcacg
    15421 cgcagcgcgg agaagcccat aaagttcgga tcgtaatagt tggcaaaaga gaaagtatgc
    15481 caggaatcca gccagccatg atttgcatga ccacgttcat ttgctttgcg taagtagatc
    15541 atttgtattc gccccctgaa tgatttcgat gggcttagtg tggacccgat ctgcctggga
    15601 tgatagaggg tgaaaattgc cccctctgtt caaaaaaatt gaactattcg aggggccatc
    15661 aaacttaatt cgcgagagtc actgtggagg gagaggcttg ctcaaatccg cgttcaagga
    15721 tttccagatt ggtaagaact tcagattcct tgacgtaatt tggcgcaccg accgaatcat
    15781 ccgctgcgaa tcccggttcg cccggcataa tattagcctt caggctggtt tcctgctggt
    15841 cgataccgta tttaataaac gaacctttct taccgtgaac gataaatttc ggataatcga
    15901 ttttcaccag atggctggtt ttgacgatgg ctttcaggtc gccataaaac agttgcgctt
    15961 caaaggtgtc gtcaggattg gctttattac gcaggctgcg gatgtcataa gcgacgtgat
    16021 ccgggcgacc gaacagagaa ataatctggt ccatcgtatg cacaccaagg ccataaaacg
    16081 cgccatcctg cggcagccca ggtttggttt ctgccaccgg gcggtaatag tcaaaatggc
    16141 tttccacttc aacaatctct cccaacttgc cactttcaat cgcttttttc gctgtcagga
    16201 agcaggagtc aaagcgacga ttctgatacg gcgtgacggt cagccctttg cttttcgcca
    16261 acgcaaacag ctccttcgcc tgggcaagcg tcggggtgaa cggtttttcg accagcacat
    16321 ttttcccggc ttccagcgcg cgtttcgcgt actcgaaatg gctgtccgcg tgggtgcaga
    16381 caacaaccag cttaacatcg ggatcgttta gtacttcgtc gagatcgctg gtgaaatgga
    16441 tatgggaata aatgggagcc tgttcttccg gcttcgcatg gcgacgaaaa atatgcgcga
    16501 catgccagct atccttgcgg ttaagtacat acggcagatg gtaacgggtg gtgcttttgc
    16561 cgaagccaat aaaggcgcag ttgatgacca tgatttcgtc ctttttaagg tggttattta
    16621 caccttagcg caaagcggac gtggttccta ctggagtgcg cataacgaac acaagcactc
    16681 ccgtggataa attgagaacg aaagatcaaa aaaaagccag cacccggctg gctaagtaat
    16741 actggaagca atgtgagcaa tgtcgtgctt tcaggttctc cgcgagggtc ttcctgatcg
    16801 cgagacaata ataatcattc tcattcgcac ttgtccaaca ctttttgcaa aaaaatgcat
    16861 ttgactcgca tttgaaagtc aatgatgttg aaagggacat ttaccccaaa gaggacaaag
    16921 gaatgagtga gatagtaata cgccacgcag aaacacggga ttacgaggcc atcaggcaga
    16981 ttcacgccca gccggaggtg tattgcaaca cactacaggt gcctcatcct tccgatcata
    17041 tgtggcagga gcgactcgcc gatcgtcccg gcatcaagca actcgtcgcc tgtattgatg
    17101 gagacgtcgt gggccatctc accattgacg tgcaacagcg cccacgccgc agtcatgttg
    17161 ccgattttgg tatctgtgtc gactctcgtt ggaagaaccg cggcgtcgcc agcgccctga
    17221 tgcgagagat gattgaaatg tgcgacaact ggttgcgggt agatcgcatt gaactaaccg
    17281 tgtttgtcga taacgccccg gcaattaagg tctataaaaa atacggcttt gaaattgaag
    17341 ggactggtaa gaagtacgca ttgcgtaatg gtgaatatgt cgatgcatat tatatggcgc
    17401 gggtgaagta agatagtgcc ctttttctga gatggaaaaa gggtgtcatt caaaatcgac
    17461 ataccttcct ttaaggtatt tatttaccca atacatatat tgagatttaa ctcataatta
    17521 cttcctaaag tgtaatattt tattttttaa tatatacgcc tacaatttcc tggagtaaat
    17581 aaataacaat taacaagcat aatattgcca ttgataaaat agcatgccat aaaaggactt
    17641 ttcagggatg agtaatattg tttacctgac agtaacggga gaacaacaag gaagcatctc
    17701 cgcaggttgt gggacttctg agtctacagg taatcgttgg cagagcgggc atgaggatga
    17761 aatatttaca ttctcactct taaataatat taataatacg gggcttggtt cacagttcca
    17821 tggtataaca ttttgtaaat taattgataa aagcactcca ttatttatta attccattaa
    17881 caataatgaa caattattta tgggatttga cttctatcga ataaatagat ttggtagatt
    17941 ggaaaagtat tattatatac aactaagagg cgctttttta tcggctattc atcaccagat
    18001 cattgaaaac caactggata cagaaacaat aactattagt tatgaattta tcctctgtca
    18061 acatcttatc gcaaataccg agttcagcta tttggcactc cctgaaaatt ataaccgttt
    18121 gtttttacca aattcaaaaa accaaacaaa taatcgtttc aaaacgttaa acagcaaagc
    18181 tattggcagg ctacttgctg ctggtggcgt atacaatggg aacattgaag gattcagaga
    18241 tactgcggaa aaactgggtg gagatgcaat aaaaggctat gatcaaatac taaatgaaaa
    18301 aacagcgggc atagcgatag caacagcatc tattctttta acaaagcgtt ctaatgttga
    18361 tacatataca gaaataaata gttacttagg caaacttaga ggtcaacaaa aacttcttga
    18421 tggtatagac ataatagaaa taatatacat taagagacct tcaaaagact tagctaactt
    18481 acgaaaggag tttaataaaa ctgtaagaaa aaattttctt atcaaacttg caaaaacctc
    18541 cgaagcatct ggaagattca acgccgaaga ccttttaaga atgagaaagg gcaatgttcc
    18601 tctaaattat aatgttcacc ataaactatc tctagatgat ggtggtacta atgatttcga
    18661 aaatttagta ttaatcgaaa acgaaccata tcataaagtt tttactaaca tgcaatcacg
    18721 aatagctaag ggaatattag taggtgaaag caaaatcact ccctgggcca ttccatctgg
    18781 ctcaatttat cctcccatg
//
LOCUS       DADMHM010000064        18197 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.065, whole genome shotgun sequence.
ACCESSION   DADMHM010000064 DADMHM010000000
VERSION     DADMHM010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 18197)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18197)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18197
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.065"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..748)
                     /gene="mak"
                     /locus_tag="JN125_001970"
     CDS             complement(<1..748)
                     /gene="mak"
                     /locus_tag="JN125_001970"
                     /EC_number="2.7.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414928.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructokinase"
                     /protein_id="HAY8871764.1"
                     /translation="MRIGIDLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIA
                     TLVDMAEQATGQRGTVGMGIPGSISPYTGVVKNANSTWLNGQPFDKDLSARLQREVRL
                     ANDANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVAFNGRAHISGNGTAGEWGHNPL
                     PWMDEDELRYREEVPCYCGKQGCIETFISGTGFAMDYRRLSGHALKGSEIIRLVEESD
                     PVAELALRRYELRLAKSLAHVVNILDPDVIV"
     gene            873..1784
                     /gene="rdgC"
                     /locus_tag="JN125_001971"
     CDS             873..1784
                     /gene="rdgC"
                     /locus_tag="JN125_001971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-associated protein RdgC"
                     /protein_id="HAY8871765.1"
                     /translation="MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMG
                     WVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKT
                     EKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGS
                     LPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEE
                     ITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFD
                     ADFILMTGELAALIQNLIEGLGGEAQR"
     gene            complement(1862..1945)
                     /locus_tag="JN125_001972"
     CDS             complement(1862..1945)
                     /locus_tag="JN125_001972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871766.1"
                     /translation="MTQRPWSKLQHKTHNIAALKIIVRRSE"
     gene            complement(1942..2283)
                     /locus_tag="JN125_001973"
                     /pseudo
     CDS             complement(1942..2283)
                     /locus_tag="JN125_001973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308469.2"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2773 domain-containing protein"
     gene            complement(2431..2715)
                     /gene="ppnP"
                     /locus_tag="JN125_001974"
     CDS             complement(2431..2715)
                     /gene="ppnP"
                     /locus_tag="JN125_001974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine/purine nucleoside phosphorylase"
                     /protein_id="HAY8871767.1"
                     /translation="MLQSNEYFSGKVKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEE
                     MTVISGALNVLLPDATDWQVYEAGSVFNVPGHSEFHLQVAEPTSYLCRYL"
     gene            complement(2787..3464)
                     /locus_tag="JN125_001975"
     CDS             complement(2787..3464)
                     /locus_tag="JN125_001975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AroM family protein"
                     /protein_id="HAY8871768.1"
                     /translation="MSASLAILTIGIVPMQEVLPLLTEYIDEDNISHHSLLGKLSREE
                     VMAEYAPEAGEDTILTLLNDNQLAHVSRRKVERDLQGVVEVLDNQGYDVILLMSTANI
                     SSMTARNTIFLEPSRILPPLVSSIVEDHQVGVIVPVEEMLPVQAQKWQILQKSPVFSL
                     GNPIHDSEQKIIDAGKELLAKGADVIMLDCLGFHQRHRDLLQKQLDVPVLLSNVLIAR
                     LAAELLV"
     gene            complement(3722..3913)
                     /gene="yaiA"
                     /locus_tag="JN125_001976"
     CDS             complement(3722..3913)
                     /gene="yaiA"
                     /locus_tag="JN125_001976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YaiA"
                     /protein_id="HAY8871769.1"
                     /translation="MPTKPPYPREAYIVTIEKGKPGQTVTWYQLRADHPKPDSLISEH
                     PTAQEAMDAKKRYEDPDKE"
     gene            complement(3963..4487)
                     /gene="aroL"
                     /locus_tag="JN125_001977"
     CDS             complement(3963..4487)
                     /gene="aroL"
                     /locus_tag="JN125_001977"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706276.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase AroL"
                     /protein_id="HAY8871770.1"
                     /translation="MTQPLFLIGPRGCGKTTVGMALADSLNRRFVDTDQWLQSQLNMT
                     VAEIVEREEWAGFRARETAALEAVTAASTVIATGGGIILTEFNRHFMQNNGIVVYLCA
                     PVSVLVNRLQAAPEEDLRPTLTGKPLSEEVQEVLEERDALYREVAHIIIDATNEPSQV
                     ISEIRSALAQTINC"
     gene            complement(4670..5128)
                     /locus_tag="JN125_001978"
     CDS             complement(4670..5128)
                     /locus_tag="JN125_001978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414921.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaiI/YqxD family protein"
                     /protein_id="HAY8871771.1"
                     /translation="MTIWVDADACPNVIKEILYRAAERMQMPLVLVANQSLRVPPSRF
                     IRTLHVAAGFDVADNEIVRQCEAGDLVITADIPLAAEAIEKGAAALNPRGERYTPATI
                     RERLTMRDFMDTLRASGIQTGGPDSLSQRDRQAFAAELEKWWLEVQRSRG"
     gene            5248..6057
                     /gene="proC"
                     /locus_tag="JN125_001979"
     CDS             5248..6057
                     /gene="proC"
                     /locus_tag="JN125_001979"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HAY8871772.1"
                     /translation="MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPNKVAA
                     LHDQFGINAAESAQEVAQIADIIFAAVKPGIMIKVLSEITSSLNKDSLVVSIAASVTL
                     DQLARALGHDRKIIRAMPNTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVI
                     AEPMIHPVVGVSGSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLET
                     GEHPGALKDMVCSPGGTTIEAVRVLEEKGFRAAVIEAMTKCMEKSEKLSKS"
     gene            complement(6074..7174)
                     /gene="adrA"
                     /locus_tag="JN125_001980"
                     /gene_synonym="dgcC"
     CDS             complement(6074..7174)
                     /gene="adrA"
                     /locus_tag="JN125_001980"
                     /gene_synonym="dgcC"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase AdrA"
                     /protein_id="HAY8871773.1"
                     /translation="MFPKIMNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLP
                     RAVGLAGMFLPIASTLVSHPPPGWWWLVLVWPHLAWQIASRAVDPLSREIYNLKTDAV
                     LAGMWVGVMGVNVLPSTAMLMIMCLNLMGAGGPRLFVAGLVLMVVSCLVTLELTGITV
                     SFNSAPLEWWLSLPIIVVYPLLFGWVSYQTATKLAEHKRRLQVMSTRDGMTGVYNRRH
                     WETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRG
                     SDVIGRFGGDEFAVIMSGTPAESAIAAMLRVREGLNTLRLPNTPQVTLRISVGVAPLN
                     PQMSHYREWLKSADLALYKAKKAGRNRTEVAA"
     gene            complement(7276..7596)
                     /gene="psiF"
                     /locus_tag="JN125_001981"
     CDS             complement(7276..7596)
                     /gene="psiF"
                     /locus_tag="JN125_001981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414918.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate starvation-inducible protein PsiF"
                     /protein_id="HAY8871774.1"
                     /translation="MKITLLVTLLFGLVFLTTVGAAERTLTPQQQRMTSCNQQATAQA
                     LKGDARKTYMSDCLKNSKSAPGEKSLTPQQQKMRECNNQATQQSLKGDDRNKFMSACL
                     KKAA"
     gene            complement(7715..9130)
                     /gene="phoA"
                     /locus_tag="JN125_001982"
     CDS             complement(7715..9130)
                     /gene="phoA"
                     /locus_tag="JN125_001982"
                     /EC_number="3.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414917.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase"
                     /protein_id="HAY8871775.1"
                     /translation="MKQSTIALALLPLLFTPVTKARTPEMPVLENRAAQGDITAPGGA
                     RRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSEITAARNYAEGAGGFFKGIDALPL
                     TGQYTHYALNKKTGKPDYVTDSAASATAWSTGVKTYNGALGVDIHEKDHPTILEMAKA
                     AGLATGNVSTAELQDATPAALVAHVTSRKYYGPSATSEKCPGNALEKGGKGSITEQLL
                     NARADVTLGGGAKTFAETATAGEWQGKTLREQAQARGYQLVSDAASLNAVTEANQQKP
                     LLGLFADGNMPVRWLGPKATYHGNIDKPAVTCTPNPQRNDSVPTLAQMTDKAIELLSK
                     NEKGFFLQVEGASIDKQDHAANPCGQSGETVDLDEAVQRALEFAKKDGNTLVIVTADH
                     AHASQIVAPDTKAPGLTQALNTKDGAVMVMSYGNSEEDSQEHTGSQLRIAAYGPHAAN
                     VVGLTDQTDLFYTMKAALGLK"
     gene            complement(9231..9491)
                     /gene="iraP"
                     /locus_tag="JN125_001983"
     CDS             complement(9231..9491)
                     /gene="iraP"
                     /locus_tag="JN125_001983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-adapter protein IraP"
                     /protein_id="HAY8871776.1"
                     /translation="MKNLIAELLLKLAQKEEESKELCAQVEALEIIVTAMLRNMAQND
                     QQRLIEQVDGALYEVKPDASIPDDDTELLRNYVKKLLKHPRQ"
     gene            complement(9718..9875)
                     /locus_tag="JN125_001984"
                     /pseudo
     CDS             complement(9718..9875)
                     /locus_tag="JN125_001984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439229.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            9953..11047
                     /gene="ddlA"
                     /locus_tag="JN125_001985"
     CDS             9953..11047
                     /gene="ddlA"
                     /locus_tag="JN125_001985"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HAY8871777.1"
                     /translation="MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGID
                     KQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPSKHEHQLIDAQNGQPLPTVDVI
                     FPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFIT
                     LTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKV
                     IVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAP
                     EINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQA
                     SGLGYTDLITRLIELALERHAADNALKTTM"
     gene            complement(11071..11283)
                     /locus_tag="JN125_001986"
     CDS             complement(11071..11283)
                     /locus_tag="JN125_001986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414914.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2754 domain-containing protein"
                     /protein_id="HAY8871778.1"
                     /translation="MNLPVKIRRDWHYYAFAIGLIFILNGVVGLLGFEAKGWQTYAVG
                     LVTWVISFWLAGLIIRRRDEETENAQ"
     gene            11543..11851
                     /locus_tag="JN125_001987"
     CDS             11543..11851
                     /locus_tag="JN125_001987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2755 family protein"
                     /protein_id="HAY8871779.1"
                     /translation="MADFTLSKSLFSGKYRNASSTPGNIAYALFVLFCFWAGAQLLNL
                     LVHAPGVYERLMQVQETGRPRVEIGLGVGTIFGLIPFLVGCLIFAVVALWLHWRHRRQ
                     "
     gene            complement(11910..13004)
                     /gene="yaiW"
                     /locus_tag="JN125_001988"
     CDS             complement(11910..13004)
                     /gene="yaiW"
                     /locus_tag="JN125_001988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="surface-exposed outer membrane lipoprotein YaiW"
                     /protein_id="HAY8871780.1"
                     /translation="MSRVNHLSSLSLLAVLVLAGCSSQAPQPLKKGEKAIDVASVVRQ
                     KMPASVKDRDAWAKYLATTFESQGLAPTLENVCSVLAVAQQESNYQADPAVPGLSKIA
                     WQEIDRRAERMHIPAFLVHTALKIKSPNGKSYSERLDSVRTEKQLSAIFDDLISMVPM
                     GQTLFVSLNPVRTGGPMQVSIAFAEQHTKGYPWKMDGTVRQEVFSRRGGLWFGTYHLL
                     NYPASYSAPIYRFADFNAGWYASRNAAFQNAVSKASGVKLALDGDLIRYDSKEPGKTE
                     LATRKLAGKLGMSDSEIRRQLEKGDSFSFEETALYKKVYQLAEAKTGKSLPREMLPGI
                     QLESPKITRNLTTAWFAKRVDERRARCMKQ"
     gene            complement(13017..14237)
                     /gene="sbmA"
                     /locus_tag="JN125_001989"
     CDS             complement(13017..14237)
                     /gene="sbmA"
                     /locus_tag="JN125_001989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706191.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide antibiotic transporter SbmA"
                     /protein_id="HAY8871781.1"
                     /translation="MFKSFFPKPGAFFLSAFVWALIAVIFWQAGGGDWVARITGASGQ
                     IPISAARFWSLDFLIFYAYYIVCVGLFAFFWFIYSPHRWQYWSILGTALIIFVTWFLV
                     EVGVAVNAWYAPFYDLIQTALSSPHKVTIEQFYREVGVFLGIALIAVVISVLNNFFVS
                     HYVFRWRTAMNEYYMANWQQLRHIEGAAQRVQEDTMRFASTLENMGVSFINAIMTLVA
                     FLPVLVTLSAHVPELPIIGHIPYGLVIAAIVWSLMGTGLLAVVGIKLPGLEFKNQRVE
                     AAYRKELVYGEDDATRATPPTVRELFSAVRKNYFRLYFHYMYFNIARILYLQVDNVFG
                     LFLLFPSIVAGTITLGLMTQITNVFGQVRGAFQYLINSWTTLVELMSIYKRLRSFEHE
                     LDGDKIQEVTHTLS"
     gene            14589..15746
                     /locus_tag="JN125_001990"
     CDS             14589..15746
                     /locus_tag="JN125_001990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-12 family class D beta-lactamase AmpH"
                     /protein_id="HAY8871782.1"
                     /translation="MKRSLLFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFY
                     GSGATGMALVVIDGNQRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLD
                     QGTVKLNDPLSKYAPPGARVPTYNGTPITLVNLATHTSALPREQPGGAAHRPVFVWPT
                     REQRWKYLSTAKLKAAPGSQAAYSNLAFDLLADALANASGKPYTQLFEEQITRPLGMK
                     DTTYTPSPDQCRRLMVAERGASPCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYQR
                     SNQADRMQTLIYQRAQFTKVIGMDVPGKADALGLGWVYMAPKEGRPGIIQKTGGGGGF
                     ITYMAMIPQKNIGAFVVVTRSPLTRFKNMSDGINDLVTELSGNKPLVIPAS"
     gene            complement(15747..16370)
                     /gene="iprA"
                     /locus_tag="JN125_001991"
     CDS             complement(15747..16370)
                     /gene="iprA"
                     /locus_tag="JN125_001991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414909.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogen peroxide resistance inhibitor IprA"
                     /protein_id="HAY8871783.1"
                     /translation="MLSVVKPLQEFGKLDKCLSRYGTRFEFNNEKQVIFSSDVNSEDT
                     FVILEGVISLRREENVLIGITQASYIMGLADGLMKNDIPYKLISEGNCTGYHLPAKQT
                     ITLIEQNQLWRDAFYWLAWQNRILELRDVQLIGHNSYEQIRATLLSMIDWNEELRSRI
                     GVMNYIHQRTRISRSVVAEVLAALRKGGYIEMNKGKLVAINRLPSEY"
     gene            complement(16458..>18197)
                     /locus_tag="JN125_001992"
     CDS             complement(16458..>18197)
                     /locus_tag="JN125_001992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000556401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HAY8871784.1"
                     /translation="TSGRIIDNKVFQSGVFNVTLNNSSEWNTVNSSVIDTLAVNNGSQ
                     VNVTDSSLVSDTISLTNGSSLNIGANGVVATDHLTVDSYSTVNLTESTGWNNYSNLYT
                     NTITVTNGGVLDVNVDQFDTEAFRTDKLELTSGNIADHNGNVISGVFDINSSDYVLNA
                     DLVNDRTWDTSKSNYGYGIVAMNSDGHLTINGNGDVDNGTELDNSSVDNVVAATGNYK
                     VRIDNATGAGTIADYKDKELIRVNDANTNATFSAANKADLGAYTYQAEQRGNTVVLQQ
                     MELTDYANMALSIPSANTNIWNLEQDTVGTRLTNSRHGLADNGGAWVSYFGGNFNGDN
                     GTINYDQDVNGIMVGVDTKIDGNNAKWIVGAAAGFAKGDMNDRSGQVDQDSQTAYIYS
                     SAHFANNVFVDGSLSYSHFNNDLSATMSNGTYVDGSTNSDAWGFGLKAGYDFKLGDAG
                     YVTPYGSVSGLFQSGDDYQLSNDMKVDGQSYDSMRYELGVDAGYTFTYSEDQALTPYF
                     KLAYVYDDSNNDNDVNGDSIDNGTEGSAVRVGLGTQFSFTKNFSAYTDANYLGGGDVD
                     QDWSANVGVKYTW"
BASE COUNT         4568 a         4686 c         4339 g         4604 t
ORIGIN      
        1 ggacaatcac atccggatcg agaatattca cgacatgtgc cagcgatttt gccagccgca
       61 gctcgtagcg acgcaatgcc agttccgcta ccggatcgct ttcttcaacc aggcggataa
      121 tttcactgcc tttcagcgca tgtccgctca aacgacgata atccatcgcg aatcccgtgc
      181 ccgaaataaa ggtttcaata caaccttgtt taccgcaata acaagggact tcctcgcgat
      241 aacgcagttc gtcttcgtcc atccacggta gcggattgtg tccccactca cctgccgtgc
      301 cattgccgct gatatgcgcc cgcccattga atgccacgcc cgcgccgcat cccgtgccga
      361 taatcacggc aaataccgtc tgcgctcccg ctgccgcgcc atctactgct tctgaaaccg
      421 ccagacagtt agcgtcattt gccagccgca cttcccgctg caacctcgcg cttaagtctt
      481 tatcgaatgg ctgaccgttg agccaggttg aattggcatt cttcaccaca ccggtgtaag
      541 gcgaaattga gccaggaatg cccataccta ccgttccgcg ctgccccgtc gcctgctccg
      601 ccatatcaac caacgtggcg atcgtttcaa tagtctgccg gtaatcatca cgcggcgtgg
      661 gcagacgatg gcggtacaac tgctcccctg catcgcccag tgcaatcact tcagttttgg
      721 tgccgcctaa atcgatacct atacgcacgg tactctcctt atttttttca atatcaatag
      781 cgtagagacg gacaaccgga ttggcaatgc aaggccgccg acaattcgtt atcatgcccg
      841 ctaaatttaa caacaaggcc gtggaaatta tcatgctgtg gttcaaaaat ttaatggttt
      901 accgtcttag ccgcgagatt tcgctgcgtg cagaagagat ggaaaaacag ctagcctcga
      961 tggcatttac cccatgcggc agccaggaca tggcgaagat gggctgggtt cctccgatgg
     1021 gatcgcacag cgatgcgtta acgcacgttg ccaatggtca aattgttatc tgcgcgcgca
     1081 aagaagaaaa aatcctcccg tctccggtga ttaagcaggc gctggaagcg aaaatcgcca
     1141 aactggaagc ggaacaggcg cgtaagctga agaaaaccga aaaagattcg ctgaaagacg
     1201 aagtgctgca ctctctgttg ccgcgtgctt tcagccgttt tagccagaca atgatgtgga
     1261 tcgacacggt taacggtttg attatggtgg actgcgccag tgccaaaaaa gcggaagata
     1321 cgctggcact gctgcgtaaa agcctggggt cgttacctgt ggtaccattg agcatggaaa
     1381 acccgattga actgacgctg accgaatggg ttcgctccgg tagcgcggca cagggcttcc
     1441 agctgcttga tgaagccgag ctgaaatcgt tgctggaaga tggcggcgtg atccgcgcga
     1501 agaaacaaga tctgaccagc gaagagatca ccaatcacat cgaagccgga aaagtggtga
     1561 ctaaactggc gctcgactgg caacagcgca ttcagtttgt gatgtgcgac gatggttcgc
     1621 tcaagcgtct gaagttttgc gacgagctgc gcgatcaaaa cgaagatatc gaccgtgaag
     1681 atttcgccca gcgttttgat gccgatttca tcctgatgac tggtgaactg gcagcgttaa
     1741 ttcaaaacct gattgaagga ttaggtggcg aagcacaacg ttaattgctg attttccttt
     1801 aatgccggat gcgacgcctg ccgcgtctta tccggcgtac gaagccacac cagggatata
     1861 attattcgct acggcggaca ataattttta gcgcagcaat attatgcgtt ttatgctgta
     1921 acttgctcca tggacgttgt gtcattgttt ttcctcaagc cagtgacgcg cttcactgcg
     1981 aattttccgc attgccccgg ttttcactaa atcccgtaac agcgaaagat cgggttgttc
     2041 gacaaataag agtaatgatg gatcctcttt taaccacgtc gttttcacat cggcagcgag
     2101 ctgtggatta ttcatagcta gcgaccgatg ccgagactcg gtcaatgtcg ttaacaacga
     2161 cgccggggta tgtgcgttgc gtaatgccgt ttggcgcaaa tgatcattgc gactttgcag
     2221 caatgcacgc caccattcat catcttattt atcttttatc gtagccagtt ccgcaacaat
     2281 atctggagat cttcactgat atttatatca accttgatga attatgaata tatcggaaat
     2341 tgaaaaaatc gcagcaaagg aaatattatt atgggttaaa gagaggatat ttcagaaaaa
     2401 tgccctcccg ttcaagggga aggcgaggaa ttacagatag cggcacagat aagaggtggg
     2461 ttcggcaact tgcagatgaa actcactgtg accgggaaca ttaaacaccg aaccggcttc
     2521 atacacctgc cagtcggtcg catcaggcag taacacattc agcgcgccac tgattaccgt
     2581 catctcttcc ggctcagcgg tgctgaaggt gtattcgcct tcaaccataa cacccacgct
     2641 ggcgcgacca gtgctgctgc tggaaaagcc gattgatttc actttgccgg aaaagtactc
     2701 attactttga agcataaact ggccctgtct ggtagttgaa catctacttc actatagggg
     2761 ccagaggcgc tggctgtcac gcaaaattac accagtaatt ccgcagccag ccgtgcaatc
     2821 aatacgttag acagcaagac aggaacatcg agctgttttt gcagtaaatc gcgatgacgt
     2881 tggtgaaatc ctaaacaatc cagcatgatg acatcagccc cttttgccag taattctttc
     2941 ccggcatcaa tgattttttg ttctgaatca tgaatggggt tacccaatga aaataccggc
     3001 gatttctgca aaatttgcca tttttgcgcc tgaacgggca gcatctcctc aaccggaacg
     3061 ataaccccca cctgatgatc ttcaacaata gaggaaacca gtggaggcaa tattcgcgac
     3121 ggctcaagaa agatcgtatt acgcgcagtc atactactaa tgtttgctgt actcattaat
     3181 aaaatgacgt cataaccctg attatcgagc acttcaacca caccttgcag gtctcgctcc
     3241 actttacgac gcgaaacatg ggccagctgg ttgtcattta ataatgtgag aatggtgtct
     3301 tcgcctgctt ctggcgcgta ctccgccatc acttcttcac gacttaactt ccccagcagg
     3361 ctatgatggg aaatattatc ttcgtcaatg tattccgtca gaagcggcaa aacctcctgc
     3421 ataggtacaa tgccgatggt caggatcgcc aacgacgcac tcattgttca tccaccttac
     3481 ttttctttcg tcgttaatta ccgggcaagt gtgaagcacc actgctgaca cttacttgtg
     3541 ctacaaatga caaaaagcgt agcagcagac gtgcacggca taatgtaaag attccaaatg
     3601 attccagtaa tggattgtta ttgtttaata ttctaattat tagaaaaaca tgaattatga
     3661 aaaatgtgac gcagatccct tgtagtggca ctcagaatcc cttccgagca gtctgatgcg
     3721 gtcactcttt gtcagggtcc tcatagcgtt ttttcgcatc catcgcttcc tgagcggtcg
     3781 gatgttcact gatcaacgag tctggtttag gatgatcggc tctgagttgg taccaggtta
     3841 ccgtctgtcc tggctttcct ttttcaatcg tcactatata tgcttcacga ggataaggcg
     3901 gtttcgttgg catcgttctt ccttatttca cggaatgaac gttaagtata ggcgctctaa
     3961 aatcaacaat tgatcgtctg tgccagggcg ctacgaattt cagaaatcac ctggctgggt
     4021 tcgtttgttg cgtcgatgat aatatgcgca acttcgcgat atagcgcatc gcgttcttcc
     4081 agcacttcct gaacttcttc gctcagcggt tttcccgtta aggttggccg taaatcttct
     4141 tccggtgcag cttgcagtcg gttaaccagg actgatactg gcgcacacaa ataaaccacg
     4201 atcccgttat tttgcatgaa gtgacgatta aattccgtca gaataatgcc gccgcctgta
     4261 gcgataacgg tggatgccgc agttaccgct tccagcgccg ccgtttctct ggcgcgaaat
     4321 cccgcccact cttccctttc gacgatctcc gcgaccgtca tattgagctg tgattgcaac
     4381 cactgatcgg tatcgacaaa ccgacggtta agcgaatcgg caagggccat tccgaccgtt
     4441 gttttaccac agccccgagg cccgatcaga aaaagaggtt gtgtcatcgt gggttttccc
     4501 caataggtcg caatgcggcg aaagccggtg tcatgagaat agcgatcatt ccatcaaact
     4561 agtacaattt cgattgtaaa gaaaaaattc cacttaaagt gaaaatctca atacatccct
     4621 tactatacca ataaatattc aagaatgaag tgtaaataat aaattacatt tagccacgac
     4681 tacgttgcac ttccagccac cacttctcca gctccgcggc aaaggcctgg cggtcacgtt
     4741 gtgaaaggct atctggtccg ccggtctgga tcccactggc acgtaaggta tccataaaat
     4801 cgcgcatcgt caggcgctca cgaatggtcg ctggcgtgta acgttcgccg cgcggattaa
     4861 gcgccgctgc gcctttctcg atggcttcag cagccaaagg tatatctgcg gtgatcacca
     4921 aatcgcccgc ttcacactgc cggacaattt cgttatcggc aacgtcgaaa cctgccgcga
     4981 cgtgcagcgt acgaataaat cgcgatggcg gcacgcgtaa actctggttt gctaccagta
     5041 ccagcggcat ctgcatacgt tccgccgcgc gatacaaaat ctctttaatt acattgggac
     5101 acgcgtcggc atccacccaa attgtcataa agtcatcctt tgttgggtaa tcctctattg
     5161 tgtcgcgctt ttgccttccg gcatagttct gtttatgctt ctgccagcga ttatcaaaac
     5221 aatgaatttc acggcaggag tgaggcaatg gaaaagaaaa tcggttttat tggctgcggc
     5281 aatatgggaa aagccattct cggcggtctg attgccagcg gtcaggtgct tccagggcaa
     5341 atctgggtat acaccccctc cccgaataaa gtcgccgccc tgcatgacca gttcggcatc
     5401 aacgccgcag aatcggcgca agaagtggcg caaatcgccg acatcatttt tgctgccgtt
     5461 aaacctggca tcatgattaa agtgcttagc gaaatcacct ccagcctgaa taaagactct
     5521 ctggtcgttt ctattgctgc aagtgtcacg ctcgaccagc ttgcccgcgc gctgggccat
     5581 gaccggaaaa ttatccgcgc catgccgaac actcccgcgc tggttaatgc cgggatgacc
     5641 tccgtaacgc caaacgcgct ggtaacccca gaagataccg ctgatgtgct gaatattttc
     5701 cgctgctttg gcgaagcgga agtaattgct gagccgatga tccacccggt agtcggtgtg
     5761 agcggttctt cgccagccta cgtatttatg tttatcgaag cgatggccga cgccgccgtg
     5821 ctgggcggga tgccacgcgc ccaggcgtat aaatttgccg ctcaggcggt aatgggttcc
     5881 gcaaaaatgg tgctggaaac gggagaacat ccgggggcac tgaaagatat ggtctgctca
     5941 ccgggaggca ccaccattga agcggtacgc gtactggaag agaaaggctt ccgtgccgca
     6001 gtgatcgaag cgatgacgaa gtgtatggaa aaatcagaaa aactcagcaa atcctgatga
     6061 ctttcgccgg acgtcaggcc gccacttcgg tgcggttacg tccggctttc tttgctttgt
     6121 aaagcgccaa atctgccgat ttcaaccact cacgatagtg actcatttgt gggttcagcg
     6181 gcgcaacccc cacactaatc cgtaaagtta cctgtggcgt attcggcaag cgtaacgtgt
     6241 ttagcccttc acgcacccgt aacatggcgg caatggcgct ctcagctggc gtaccggaca
     6301 tgattactgc aaactcatcg ccgccaaacc gaccaatcac atcgctaccg cgcagggtaa
     6361 tttgtaactg tcgggtaagc gccacaatcg cttcatcgcc cacatcatga ccccaggtat
     6421 cgttgatgct cttgaaatgg tcgatatcga taatcagtaa cgttgcatcg cgattatgcc
     6481 gccgacagtt atcaaattca ttgcgtaaca tagtttccca atgacgtcgg ttatacacgc
     6541 ccgtcatgcc gtcgcgggta ctcatgacct gcaacctgcg tttatgttcc gccagtttgg
     6601 ttgccgtctg gtagctgacc cagccaaaca gcagaggata aacgacaata atgggaaggg
     6661 agagccacca ttccagcggc gcactattga acgacacggt aatgcccgta agctcgaggg
     6721 tgacaaggca ggaaaccacc atcaacacca gacccgcgac aaacagacgg gggccgcctg
     6781 cccccatcaa attcagacac ataatcatca acatagcggt ggaaggcagc acgtttacgc
     6841 ccattacgcc tacccacatt cccgctaata ctgcatcggt ttttaagttg taaatttccc
     6901 ggctaagcgg atcgacggcc ctgctcgcta tctgccaggc taaatgcggc cagaccaaca
     6961 ccagccacca ccagcccggc ggcgggtgcg aaaccagcgt tgaagcaatc ggtaagaaca
     7021 tgccagccag gccaaccgca cggggtagtc tgacgcgacg ggcgaagcgc agcccggacc
     7081 gctgatgttc gttttgagga gttaaaggag gttcctcccc atgcgccgcc gcttttttga
     7141 aaaagttttc atcattcatt atttttggga acattcagaa acaattttcc caaattatag
     7201 agacggggct aaaggcagaa gtatgaaatt tcgggtgagc cactttcgta gctcacccgt
     7261 tagcactatc aggtatcagg cggctttctt gaggcaggca ctcataaact tattacgatc
     7321 atcacctttc agagattgtt gtgttgcttg attattacat tcgcgcatct tttgctgctg
     7381 tggcgtcaaa cttttttcac caggcgcaga cttgctgttc ttcaggcaat cactcatgta
     7441 ggtcttacga gcatcccctt tcaacgcctg cgccgtcgcc tgctgattac aggaggtcat
     7501 acgctgttgt tgtggggtta acgttctctc ggcagcgccg actgtggtta aaaaaaccag
     7561 accgaaaagc aaggtaacca gtaatgtaat tttcatagca ccatccctct tcatgtttta
     7621 accatgagcg tatgcgcccg agatttgcca ttaagtctgg ttgctaacag caaaaaaacc
     7681 acccggcagc gaaaattcac tgccgggcgc ggttttattt cagccccagg gcggctttca
     7741 tggtgtagaa gagatcggtc tggtcggtca gtccaacgac attggcggca tgcgggccat
     7801 acgccgcaat acgcaactga ctgccggtat gttcttgtga atcctcttcg gagttcccgt
     7861 agctcatcac catcactgcg ccatctttgg tatttagcgc ctgggtgagg cccggagctt
     7921 tggtatccgg cgcgacaatc tggctggcgt gggcgtgatc agcggtgact atgaccagcg
     7981 tgttgccatc ctttttagcg aattccagcg cccgttgtac ggcttcatcg agatcgaccg
     8041 tctcgccact ttgcccacaa ggattcgcag cgtgatcctg tttatcgatt gacgcacctt
     8101 caacttgcag gaaaaatcct ttctcatttt tactcaacaa ttcaatggct ttgtcggtca
     8161 tctgcgccag ggttggtaca ctgtcattac gttgcggatt aggcgtacag gtgactgcgg
     8221 gcttatcgat attgccgtgg tacgttgctt tcggtcctag ccagcgcact ggcatattgc
     8281 cgtcagcaaa cagtccaagc agaggttttt gctgattcgc ttccgtcacc gcatttagcg
     8341 aggcggcatc gctgaccaac tgataaccac gcgcctgtgc ctgttcacgc agcgtttttc
     8401 cctgccattc accggcggtt gccgtttcag caaaggtttt tgcgccaccg ccaagcgtaa
     8461 cgtcggcacg agcattaagc agctgttcgg taatcgatcc ttttccgcct ttttccagag
     8521 cgttacccgg acatttttca ctggtcgcgc tcggaccgta gtatttgcgc gaagtcacat
     8581 gtgccaccag cgcagcgggc gtggcatcct gcaactctgc ggtagaaacg ttaccggtcg
     8641 ccagacctgc ggcttttgcc atttccagaa tcgttgggtg atctttttcg tgaatatcga
     8701 cgcccagcgc gccgttatag gttttgacac cggttgacca ggcggttgct gatgcagccg
     8761 aatcggtgac gtagtccggt ttgccggttt ttttattcag cgcatagtga gtgtattgcc
     8821 cggtaagcgg taaggcatcg atacctttaa aaaagccgcc cgcaccttcg gcataattac
     8881 gtgcggctgt aatttccgaa tcccccatcc catcgccaat cagcaaaata atattttttg
     8941 caggtttatc gctaagagaa tcacgcagag cggcagtctg atcacccgtt aaacggcgag
     9001 caccgccggg tgcagtaata tcgccctgag cagcccggtt ttccagaaca ggcatttctg
     9061 gtgtccgggc ttttgtcaca ggggtaaaca gtaacggtaa gagtgccagt gcaatagtgc
     9121 tttgtttcac tttattttct ccatgtacaa atacattaaa aaataaaaac aaagcgacta
     9181 taagtctcgg ccgtgacaac tttatgacag ctgttgaaaa gattaacttt ttactgacga
     9241 ggatgcttca ataacttctt tacataattg cgcagcagct ccgtatcgtc gtcaggaatg
     9301 ctggcatcag gctttacctc gtaaagagcc ccatccacct gttcaatcaa gcgctgttgg
     9361 tcattttgtg ccatattgcg aagcattgca gtgacgataa tctccaaagc ttctacctgc
     9421 gcgcacagtt ctttcgactc ttcttctttt tgggcaagct ttaataacaa ctcagcaatg
     9481 agatttttca tgtctgtatt tccttatcca acgtatggag aagttaacat tatgtttcac
     9541 aacttcatag tgtctggaag tattattttt atgacaaagg aaatactttg cgcaaatgtt
     9601 ctttgtttga ttaccagcga aacgtttctc atatttaaat aattaaccac acaaagaaca
     9661 ggcctttaat tatcaacctt tattataaac aaaagttatg aaatatattc tctgcgttta
     9721 cttacaacta agagaaaaaa ctcaccgcat ggccatttaa gccaggaata aattagcttc
     9781 ccgttcatca tttttgtgat ctcgcgcaca tctttgtgat aacgcacttt cttcaccatt
     9841 acgttgcacg ctttgtcagc agaagattgc aacattctgt cagaaggccg cgaatccccc
     9901 gttttgtcgt ggtaatgtat gcactttgtg ttagacggga taggttttta agatggaaaa
     9961 actgcgggta ggaatcgttt ttggtggtaa atcagcggaa catgaagtgt ctctgcaatc
    10021 ggcaaaaaac attgtcgatg ccattgataa aagtcgcttc gacgttgtgc tgctgggcat
    10081 tgataaacaa gggcaatggc acgtcagcga tgccagcaat tatctgctaa atgcagacga
    10141 tcctgcccat attgcgttgc gcccttcggc gactagcctt gcgcaggtgc caagtaaaca
    10201 tgagcatcag cttatcgacg cgcaaaacgg tcagccgtta ccgacggtgg atgtcatttt
    10261 cccgattgtc cacggtacgc tgggcgaaga tggttccttg cagggaatgc tgcgggtcgc
    10321 caatttaccg tttgtaggtt ctgatgttct ggcttcagca gcctgtatgg ataaagatgt
    10381 taccaaacgt ctgctgcgcg atgccgggct gaacattgcg ccatttatta ccctgacgcg
    10441 cgccaatcgt cacaacatta gttttgccga agtggagtct aaactggggt taccactgtt
    10501 tgtaaaaccg gctaatcagg gctcttctgt tggtgtcagc aaagtaacca gtgaagaaca
    10561 gtacgcaatt gccgtcgatc tggcgttcga attcgatcat aaagtgatcg ttgagcaagg
    10621 gatcaaaggt cgtgagatcg aatgcgcagt tctgggcaac gacaacccgc aagccagcac
    10681 ctgtggcgag atcgtactca ccagcgactt ctatgcctac gacaccaagt acattgacga
    10741 agatggcgcg aaagtggtag ttccggcagc cattgcgcca gaaatcaacg ataagatccg
    10801 ggcgattgcc gttcaggctt atcaaacgtt gggatgcgca ggcatggcgc gtgtagacgt
    10861 gtttttaacc ccagagaacg aagtggtgat caacgagatc aacacactgc ctggcttcac
    10921 caacatcagt atgtatccga agctgtggca agccagcggt ctgggttaca ccgatctgat
    10981 cacacgtttg attgagctgg cgctggagcg tcacgctgcg gataacgcat tgaaaaccac
    11041 aatgtaatat tttaacgccc gataatattc ttattgggcg ttttcagttt cttcatcgcg
    11101 acgacgaata atcaaccccg ccagccagaa actaatcacc cacgtcacca gaccgacggc
    11161 ataggtctgc caaccttttg cttcaaatcc cagtaacccc accacgccat taagaatgaa
    11221 tataaggcca atggcgaacg catagtagtg ccagtcacgg cggattttta caggcagatt
    11281 catggcagct ccgttaacga aaaacaacat ccttgcatat tctgtaacaa ccgtctgtgg
    11341 tgtagacaac attttcgtaa ttgttaataa atttaactta aggttgccat tttgtgactc
    11401 acaacgaaga ttcacgcttc gggaatattc ccaacatcaa tttaccatga ttctgatatt
    11461 gacaatctaa atgacctgtc agacttgcca taagccgctg gtatcacacc agaagagaag
    11521 cagatgactt ccggaggttt ttatggctga tttcaccctg tcaaaatcgc tgtttagcgg
    11581 aaaatatcgc aatgcctctt caacgcctgg caacattgcc tatgcgttgt ttgtgctgtt
    11641 ttgcttttgg gctggggcgc aattgctgaa cctgttagtg catgcgcccg gcgtctatga
    11701 gcgtttaatg caggtccagg aaacaggtcg cccacgggtg gaaattggtt taggtgtcgg
    11761 caccattttc gggctgatcc cgtttttagt aggctgcctc atttttgcag tggtggcgct
    11821 atggctgcac tggcgacatc gccgccagta agatttacgt tgccagatac ggcctaaaac
    11881 gccttatctg gcatgacatt cctgtttgat cactgtttca tacaacgcgc ccgccgttcg
    11941 tctacgcgct tcgcaaacca ggccgtagtc aggttgcggg tgattttcgg gctttccagt
    12001 tgaatgccag gcaacatttc gcggggtagt gatttacccg ttttcgcttc ggcaagttga
    12061 taaactttct tgtacagcgc cgtctcctca aaagagaagc tgtcaccttt ctctaactga
    12121 cggcgaattt cgctgtcgct catccccagt tttcccgcca gtttgcgcgt tgccagttcg
    12181 gttttcccgg gttctttact gtcgtaacga attaaatcac cgtccagtgc cagcttcacg
    12241 ccgctggcct tactgaccgc gttctgaaac gcggcattac ggctggcgta ccagccagcg
    12301 ttaaaatcag caaagcggta tatcggtgcg ctatagctgg cgggataatt cagtaaatgg
    12361 taagtaccaa accacaaccc gccgcggcga ctgaagactt cctgacgaac tgtaccgtcc
    12421 attttccacg gatacccttt ggtatgctgt tcggcaaaag caatgctgac ctgcatcggc
    12481 ccaccggtgc gcaccggatt aagcgaaaca aacagcgtct gccccattgg taccatgctg
    12541 atcagatcgt caaaaatcgc gctcaattgc ttttctgtac gcaccgaatc taaccgttcg
    12601 ctataacttt tgccgtttgg cgatttgatt tttagcgcgg tatgaaccag aaaagcagga
    12661 atgtgcatcc gttcagcacg acggtcaatc tcttgccagg cgatcttgct taagcccgga
    12721 acggccggat ctgcctgata atttgactcc tgctgcgcca ccgccagcac cgagcagacg
    12781 ttttccagcg tcggtgccag cccctgactt tcaaaggtgg tggcgagata tttcgcccag
    12841 gcatcgcggt ctttcacgct cgcaggcatc ttctgccgca cgacgctcgc tacatctatc
    12901 gctttttcgc cctttttcaa cggttgcgga gcctgactac tacaccccgc taaaaccaga
    12961 accgccaaca atgacagcga agatagatga ttgacgcgcg acattacttc tcctttttag
    13021 ctcaaggtat gggttacttc ctgaattttg tcaccatcca gctcatgttc aaagctgcgc
    13081 agacgtttgt agatagacat caactcaacc agtgtggtcc atgagttaat caggtactgg
    13141 aaagcaccgc gaacctgacc aaaaacgttg gtaatctgcg tcatcaagcc gagcgtaatc
    13201 gtaccggcaa caattgacgg aaacagcaag aacaaaccga aaacgttatc gacctgcaaa
    13261 tagagaatgc gggcgatgtt gaaatacata tagtgaaaat agaggcgaaa atagtttttc
    13321 cgtacggcgc taaacagctc gcgtaccgta ggcggcgtcg cgcgcgtggc atcgtcttca
    13381 ccataaacca gctctttacg gtaggcggcc tctactcgct ggtttttaaa ctccagcccc
    13441 ggcagtttga tccctaccac tgccagcaat ccggtcccca tcagcgacca gacgatagcg
    13501 gcaatcacca gaccatacgg aatgtgcccg ataatcggca gctccggcac atgcgcggag
    13561 agcgttacca gcaccggcag gaaggcgacc aacgtcatga tggcgttgat aaaactgacg
    13621 cccatattct ccagcgttga agcaaaacgc atggtgtctt cctgcacacg ctgtgcggca
    13681 ccttcgatat gacgcagttg ttgccagttc gccatgtaat attcgttcat cgccgtacgc
    13741 cagcggaaca catagtgact gacaaagaag ttgttcagta cactgatcac caccgcgatc
    13801 agcgcaatcc ccagaaagac gcccacttcg cggtaaaatt gttcgatagt gactttatgc
    13861 ggcgaactta gcgcggtttg aatcagatca tagaacggtg cataccaggc gttgacggcg
    13921 accccgactt ccaccaaaaa ccaggtgacg aagatgatca gtgcagtacc gagtattgac
    13981 cagtattgcc aacggtgcgg gctgtagata aaccagaaaa atgcgaaaag tcctacgcaa
    14041 acaatgtagt aagcgtaaaa aatcaggaaa tccaacgacc agaaacgcgc ggcgctaatc
    14101 gggatctgcc cggaagcgcc ggtgatacgc gccacccagt ctcccccacc ggcttgccag
    14161 aagataacgg caatcaatgc ccaaacaaag gccgagagaa aaaacgctcc cggctttggg
    14221 aaaaaagact taaacatatg cactcctgct aacttcttat cgttttaaca actgctgtgt
    14281 attaaccgca tgaccactac aaagcgtcag ccaaatgaaa ccgcccattg tgacccatag
    14341 caaggcgctt agttcgccag cctgaccata agaattgttt cgacggattt cacaaaccaa
    14401 agattgttta cataagcgga ttaacacgcg caggatcaca aatgcaggca ttggtgagca
    14461 ggaaaaagat cgtgtttacg cgccgttacg tttttaacac tattattgca ctaattcgcc
    14521 ctttgcaatc catcaatgag tagtataaat acgctcagtt accttcattc aatctatgga
    14581 caccaccgtt gaaacgtagt ctactttttt ctgccgtgct gtgtgcggcg tcattgacct
    14641 ccgtccatgc ggcgcagccg atcactgaac cggagtttgc ctctgatatt gtcgatcgtt
    14701 atgccgatca tattttttac ggcagcggtg ccacggggat ggcgctggtt gttatcgacg
    14761 gtaaccagcg cgtctttcgc agttatggcg aaacgcgacc tggtaataac gttcgcccgc
    14821 agctggattc ggtcgtgcgt attgcttccc tcaccaagct aatgaccagt gaaatgctgg
    14881 tgaaattgct cgaccagggg accgtgaagt taaacgatcc gctaagtaaa tatgctccgc
    14941 caggcgcacg cgtgccaacc tacaatggga cgcccattac cctagtgaat ctggcaaccc
    15001 ataccagcgc cctgccccgt gaacagcccg gtggcgcggc acatcgtccg gtgtttgtct
    15061 ggccaacgcg cgagcaacgc tggaaatacc tttctacggc gaagctgaaa gccgcgccag
    15121 gcagtcaggc ggcgtactct aaccttgcgt tcgacctgct ggcagatgca ctggcgaatg
    15181 cgtccggcaa gccttatacc cagttgtttg aagagcagat tacccgtcca ttggggatga
    15241 aagacaccac ctacaccccc tcaccggatc agtgccgccg tttaatggtt gctgagcgcg
    15301 gtgccagtcc gtgcaataac acgctggcgg caattggcag cggcggcgtc tattccacgc
    15361 ctggcgatat gatgcgctgg atgcagcagt atttatcatc tgatttttat cagcgcagta
    15421 accaggcaga tcgcatgcag acgttgattt atcagcgcgc gcagtttacc aaagtgattg
    15481 gcatggatgt ccccggcaaa gcggatgcgc ttggtttagg ctgggtatat atggccccga
    15541 aagagggtcg tccggggatt attcagaaga caggcggtgg tggcggtttc attacctata
    15601 tggcgatgat cccgcagaag aatattggcg cgtttgtggt ggtcactcgt tcgccgttga
    15661 cgcgctttaa aaatatgagc gatggcatca atgatctggt gaccgagcta agcgggaata
    15721 aaccgttggt tatccctgca tcctgattaa tactctgaag gcaaacggtt gatagcgacc
    15781 agtttgcctt tattcatttc gatatagccg cctttacgca aagcagcgag aacttctgcg
    15841 acgacagaac gcgatatgcg tgtacgttga tggatataat tcatcacacc aatacgtgat
    15901 cgcaattctt cattccagtc aatcattgat aataatgttg cgcggatttg ttcgtaggaa
    15961 ttatgcccaa tgagctgcac gtcgcgtaat tccagaattc tattttgcca agctaaccag
    16021 taaaaagcgt ctcgccagag ttgattttgt tcaataagcg taatggtttg tttggctggt
    16081 agatgatatc ccgtacaatt tccttctgat attaatttgt atggtatatc gtttttcatt
    16141 aaaccatcag ccagccccat aatataagaa gcctgggtaa taccgataag tacgttttct
    16201 tctctacgca gagagataac gccctctaaa ataacgaaag tatcttcgct attgacatca
    16261 ctggaaaata taacttgctt ttcattatta aactcgaagc gcgtaccgta tctggacaaa
    16321 catttatcga gcttaccaaa ttcctgaaga ggtttaacta cagataacat ttgcgcgtcc
    16381 tttgcagtaa tgcccgtcaa atccttgacg ggcattattt agattaaatt accagaattt
    16441 cttcggagtg aagaatatta ccaagtatat ttaacaccca cgttcgcgga ccagtcttga
    16501 tctacgtcac caccaccgag gtagttagca tcggtatagg cgctgaagtt cttggtgaag
    16561 ctgaactgag tacccagacc aacacgtacc gcagaccctt cagtaccgtt atcgatggaa
    16621 tcaccgttca catcgttatc gttgtttgag tcgtcgtaga cgtaagccag tttgaagtac
    16681 ggagtcagag cctgatcttc gctgtaggtg aaggtataac ctgcatctac acccagttca
    16741 taacgcatgc tgtcgtaaga ctgaccgtca actttcatgt cgttgctcag ctggtagtca
    16801 tcaccagact ggaacagacc agaaacgctg ccgtaaggag tcacgtaacc agcatcaccc
    16861 agtttgaagt cgtaaccggc tttcaaaccg aagccccacg cgtcagagtt ggtgctaccg
    16921 tcaacgtaag taccgttgct catggttgca gacagatcgt tgttgaagtg agagtagctc
    16981 aagctaccat caacaaagac gttgttcgcg aagtgagcag aagagtagat gtaggcagtc
    17041 tggctgtctt gatccacctg accagaacgg tcattcatgt cacctttagc gaagcctgca
    17101 gccgcaccga cgatccactt agcgttgtta ccgtcaattt tggtatcaac accgaccatg
    17161 atgccgttaa catcctgatc atagttgatg gtgccgttgt cgccgttgaa gttaccaccg
    17221 aagtagctta cccatgcgcc gccgttatca gccaggccat gacgagagtt ggtcagacga
    17281 gtaccaacgg tgtcttgttc caggttccag atattggtgt tcgcagacgg gatgctcagc
    17341 gccatgttag cgtagtcggt cagctccatc tgttgcagaa caacggtgtt accgcgctgt
    17401 tcagcctgat aggtgtatgc acccaggtca gctttgttag cagcagagaa ggtcgcgttg
    17461 gtgttagcgt cgtttacccg aataagttct ttatctttgt aatcagcgat agtgccagcg
    17521 ccagttgcgt tgtcgatacg aactttgtag ttaccggttg cagcaacaac gttatcaaca
    17581 gagctgttat ccagttcagt accgttgtct acgtcgccgt taccattgat agtcaggtga
    17641 ccatcagagt tcatagcaac aataccgtaa ccgtagttag acttggaagt atcccacgta
    17701 cggtcgttca ccagatcagc gttcagaacg taatcgctgc tgttgatgtc gaacacacca
    17761 gaaattacgt tgccattatg gtcagcaatg ttgccgctgg tcagttccag tttatcagta
    17821 cggaaagctt cagtatcgaa ctgatcaaca ttcacatcca gcacaccacc gttagtcaca
    17881 gtgatagtat tggtatacag attagaataa ttattccaac cggtagattc ggttaaatta
    17941 acggtactgt agctatcaac agtcaggtgg tctgtagcaa ccacgccatt tgcaccaata
    18001 ttcagtgaag aaccgttggt taaactaatg gtatctgata ccagagagga atcagtaaca
    18061 tttacctgag agccattatt tacagctaat gtatcaatta ctgaactatt aacggtattc
    18121 cattctgaac tattgttcag tgttacgtta aatacgccgc tctggaatac tttgttgtca
    18181 ataatacggc ctgaagt
//
LOCUS       DADMHM010000065        18154 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.066, whole genome shotgun sequence.
ACCESSION   DADMHM010000065 DADMHM010000000
VERSION     DADMHM010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 18154)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18154)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18154
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.066"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            254..481
                     /gene="feoA"
                     /locus_tag="JN125_001993"
     CDS             254..481
                     /gene="feoA"
                     /locus_tag="JN125_001993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transporter A"
                     /protein_id="HAY8871785.1"
                     /translation="MQYTPDTAWKITGFSREISPAYRQKLLSLGMLPGSSFNVVRVAP
                     LGDPIHIETRRVSLVLRKKDLALLEVEAVSC"
     gene            498..2819
                     /gene="feoB"
                     /locus_tag="JN125_001994"
     CDS             498..2819
                     /gene="feoB"
                     /locus_tag="JN125_001994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(2+) transporter permease subunit FeoB"
                     /protein_id="HAY8871786.1"
                     /translation="MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQ
                     FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL
                     YLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALK
                     LAIDRYKANENVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAY
                     AGEASQHLDAALARLRNEMDDPALHIADARYQCIAAICDVVSNTLTAEPSRFTTAVDK
                     IVLNRFLGLPIFLFVMYLMFLLAINIGGALQPLFDVGSVALFVHGIQWIGYTLHFPDW
                     LTIFLAQGLGGGINTVLPLVPQIGMMYLFLSFLEDSGYMARAAFVMDRLMQALGLPGK
                     SFVPLIVGFGCNVPSVMGARTLDAPRERLMTIMMAPFMSCGARLAIFAVFAAAFFGQN
                     GALAVFSLYMLGIVMAVLTGLMLKYTIMRGEATPFVMELPVYHVPHVKSLIIQTWQRL
                     KGFVLRAGKVIIIVSIFLSAFNSFSLSGKIVDNINDSALASVSRVITPVFKPIGVHED
                     NWQATVGLFTGAMAKEVVVGTLNTLYTAENIQDEEFNPAEFNLGEELFSAIDETWQSL
                     KDTFSLSVLMNPIEASKGDGEMGTGAMGVMDQKFGSAAAAYSYLIFVLLYVPCISVMG
                     AIARESSRGWMGFSILWGLNIAYSLATLFYQVASYSQHPTYSLVCILAVILFNIVVIG
                     LLRRARSRVDIELLATRKSVSSCCAASTTGDCH"
     gene            2819..3055
                     /gene="feoC"
                     /locus_tag="JN125_001995"
     CDS             2819..3055
                     /gene="feoC"
                     /locus_tag="JN125_001995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[Fe-S]-dependent transcriptional repressor FeoC"
                     /protein_id="HAY8871787.1"
                     /translation="MASLIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMG
                     KAVRIQEEPDGCLSGSCKSCPEGKACLREWWALR"
     gene            3258..4136
                     /gene="rpnA"
                     /locus_tag="JN125_001996"
     CDS             3258..4136
                     /gene="rpnA"
                     /locus_tag="JN125_001996"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination-promoting nuclease RpnA"
                     /protein_id="HAY8871788.1"
                     /translation="MSKKQSSTPHDALFKLFLRQPDTARDFLAFHLPAPIHALCDMKT
                     LKLESSSFIDDDLRESYSDVLWSVKTEQGPGYIYCLIEHQSTSNKLIAFRMMRYAIAA
                     MQNHLDAGYKTLPMVVPLLFYHGIESPYPYSLCWLDCFADPKLARQLYASAFPLIDVT
                     VMPDDEIMQHRRMALLELIQKHIRQRDLMGLVEQMACLLSSGYANDRQIKGLFNYILQ
                     TGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLTDI
                     MRFTGVSEEELAAASQ"
     gene            complement(4165..4935)
                     /gene="bioH"
                     /locus_tag="JN125_001997"
     CDS             complement(4165..4935)
                     /gene="bioH"
                     /locus_tag="JN125_001997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709189.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pimeloyl-ACP methyl ester esterase BioH"
                     /protein_id="HAY8871789.1"
                     /translation="MNNIWWQTKGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHL
                     VDLPGFGRSQGFGALSLADMAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVQAL
                     VTVASSPCFSARDDWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETARQDARA
                     LKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVPMPFLRLYGYLDGLVPRKVVPML
                     DKLWPRSKSYIFAKAAHAPFISHPVEFCHLLVALKQRV"
     gene            4973..5656
                     /gene="gntX"
                     /locus_tag="JN125_001998"
     CDS             4973..5656
                     /gene="gntX"
                     /locus_tag="JN125_001998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417872.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA utilization protein GntX"
                     /protein_id="HAY8871790.1"
                     /translation="MLTVPGLCWLCRMPLALGHWGICSVCSRAARTDKTLCPQCGLPA
                     THSHLPCGRSLQKPPPWQRLVTVADYAPPLSPLIHQLKFSRRSEIASALSRLLLLEVL
                     HARRTTGLQLPDRIISVPLWQRRHWRRGFNQSDLLCQPLSRWLHCRWDSEAVTRTRAT
                     ATQHFLSARLRKRNLKNAFRLELPVQGRHMVIVDDVVTTGSTVAEIAQLLLRNGAATV
                     QVWCLCRTL"
     gene            5715..6290
                     /gene="nfuA"
                     /locus_tag="JN125_001999"
     CDS             5715..6290
                     /gene="nfuA"
                     /locus_tag="JN125_001999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016942932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S biogenesis protein NfuA"
                     /protein_id="HAY8871791.1"
                     /translation="MIRISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYC
                     PPDAVEATDTALKFDLLTAYVDELSAPYLEDAEIDFVTDQLGSQLTLKAPNAKMRKVA
                     DDAPLMERVEYMLQSQINPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLK
                     EGIEKQLLNEFPELKGVRDLTEHQRGEHSYY"
     gene            6651..7967
                     /gene="gntT"
                     /locus_tag="JN125_002000"
     CDS             6651..7967
                     /gene="gntT"
                     /locus_tag="JN125_002000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate transporter"
                     /protein_id="HAY8871792.1"
                     /translation="MPLVIVAIGVILLLLLMIRFKMNGFIALVLVALAVGLMQGMPLD
                     KVIGSIKAGVGGTLGSLALIMGFGAMLGKMLADCGGAQRIATTLIAKFGKKHIQWAVV
                     LTGFTVGFALFYEVGFVLMLPLVFTIAASANIPLLYVGVPMAAALSVTHGFLPPHPGP
                     TAIATIFNADMGKTLLYGTILAIPTVILAGPVYARVLKGIDKPIPEGLYSAKTFSEEE
                     MPSFGVSVWTSLVPVVLMAMRAIAEMILPKGHAFLPVAEFLGDPVMATLIAVLIAMFT
                     FGLNRGRSMDQINDTLVSSIKIIAMMLLIIGGGGAFKQVLVDSGVDKYIASMMHETNI
                     SPLLMAWSIAAVLRIALGSATVAAITAGGIAAPLIATTGVSPELMVIAVGSGSVIFSH
                     VNDPGFWLFKEYFNLTIGETIKSWSMLETIISVCGLVGCLLLNMVI"
     gene            complement(8012..10096)
                     /gene="malQ"
                     /locus_tag="JN125_002001"
     CDS             complement(8012..10096)
                     /gene="malQ"
                     /locus_tag="JN125_002001"
                     /EC_number="2.4.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-alpha-glucanotransferase"
                     /protein_id="HAY8871793.1"
                     /translation="MESKRLDNAALAAGISPNYINAHGKPQSISAETKRRLLDAMHQR
                     TATKVAVTPVPNVMVYTSGKKMPMVVEGSGEYSWLLTTEEGTQYKGHVTGGKAFNLPT
                     KLPEGYHTLTLTQDDQRAHCRVIVAPKRCYEPQALLNKQKLWGACVQLYTLRSEKNWG
                     IGDFGDLKAMLVDVAKRGGSFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNA
                     VEDFHLSEEAQAWWQLPTTQQTLQQARDADWVDYSTVTALKMTALRMAWKGFAQRDDE
                     QMTAFRQFVAEQGDSLFWQAAFDALHAQQVKEDEMRWGWPAWPEMYQNVDSPEVRQFC
                     EEHRDDVDFYLWLQWLAYSQFAACWEISQGYEMPIGLYRDLAVGVAEGGAETWCDREL
                     YCLKASVGAPPDILGPLGQNWGLPPMDPHIITARAYEPFIELLRANMQNCGALRIDHV
                     MSMLRLWWIPYGETADQGAYVHYPVDNLLSILALESKRHRCMVIGEDLGTVPVEIVGK
                     LRSSGVYSYKVLYFENDHEKTFRAPKAYPEQSMAVAATHDLPTLRGYWESGDLTLGKT
                     LGLYPDEVVLRGLYQDRELAKQGLLDALHKYGCLPKRAGHKASLMSMTPTLNRGLQRY
                     IADSNSALLGLQPEDWLDMAEPVNIPGTSYQYKNWRRKLSATLEMMFADDGVNKLLKD
                     LDRRRRAAAKKQ"
     gene            complement(10106..12499)
                     /gene="malP"
                     /locus_tag="JN125_002002"
     CDS             complement(10106..12499)
                     /gene="malP"
                     /locus_tag="JN125_002002"
                     /EC_number="2.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltodextrin phosphorylase"
                     /protein_id="HAY8871794.1"
                     /translation="MSQPIFNDKQFQEALSRQWQRYGLNSAAEMTPRQWWLAVSEALA
                     EMLRAQPFAKPVANQRHVNYISMEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDL
                     LEEEIDPALGNGGLGRLAACFLDSMATIGQSATGYGLNYQYGLFRQSFVDGKQVEAPD
                     DWHRSNYPWFRHNEALDVQVGIGGKVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPL
                     RLWQATHAHPFDLTKFNDGDFLRAEQQGINAEKLTKVLYPNDNHTAGKKLRLMQQYFQ
                     CACSVADILRRHHLAGRKLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAW
                     AITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRFKTLVEKTWPGDEK
                     VWAKLAVVHDKQVHMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTN
                     GITPRRWIKQCNPALAALLDKLLQKEWANDLDQLINLEKFADDAKFRQQYREIKQANK
                     VRLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVP
                     RVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIP
                     AADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVE
                     QVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSIGKQGGDPYL
                     VMADFAAYVEAQKQVDVLYRDQEAWTRVAILNTARCGMFSSDRSIRDYQARIWQAKR"
     gene            13111..15816
                     /gene="malT"
                     /locus_tag="JN125_002003"
                     /pseudo
     CDS             13111..15816
                     /gene="malT"
                     /locus_tag="JN125_002003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312287.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MalT"
     gene            complement(15859..16875)
                     /gene="rtcA"
                     /locus_tag="JN125_002004"
     CDS             complement(15859..16875)
                     /gene="rtcA"
                     /locus_tag="JN125_002004"
                     /EC_number="6.5.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 3'-terminal phosphate cyclase"
                     /protein_id="HAY8871795.1"
                     /translation="MKRMIALDGAQGEGGGQILRAALSLSMITGQPFTITSIRAGRAK
                     PGLLRQHLTAVKAAAEICRATVEGAELGSQRLVFRPGAVRGGEYRFAIGSAGSCTLVL
                     QTVLPALWFADGPSRVEVSGGTDNPSAPPADFIRRVLEPLLAKIGIHQQTTLLRHGFY
                     PAGGGVVATEVSPVASFNTLQLGERGNIVQMRGEVLLAGVPRHVAEREIATLAGSFSL
                     HEQNIHNLPRDQGPGNTVSLEVESENITERFFVVGEKRVSAEVVAAQLVKEVKRYLAS
                     PAAVGEYLADQLVLPMALAGAGEFTVAHPSCHLLTNIAVVERFLPVRFGLIETDGVTR
                     VSIE"
     gene            complement(16879..18105)
                     /locus_tag="JN125_002005"
     CDS             complement(16879..18105)
                     /locus_tag="JN125_002005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RtcB family protein"
                     /protein_id="HAY8871796.1"
                     /translation="MNYELLTTENAPVKMWTKGVPVEADARQQLINTAKMPFIFKHIA
                     VMPDVHLGKDSTIGSVIPTKGAIIPAAVGVDIGCGMNALRTALTAEDLPENLAELRQA
                     IETAVPHGRTTGRCKRDKGAWENPPVNVDAKWAELEAGYQWLTQKYPRFLNTNNYKHL
                     GTLGTGNHFIKICLDESDQVWIMLHSGSRGIGNAIGTYFIDLAQKEMQETLETLPSRD
                     LAYFMEGTEYFDDYLKAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQPQTLAMEE
                     INCHHNYVQKEQHFGEEIYVTRKGAVSARAGQYGIIPGSMGAKSFIVRGLGNEESFCS
                     CSHGAGRVMSRTKAKKLFSVEDQIRATAHVECRKDAEVIDEIPMAYKDIDAVMTAQSD
                     LVEVIYTLRQVVCVKG"
BASE COUNT         4176 a         4996 c         4560 g         4422 t
ORIGIN      
        1 cagtccgggt aattcactat tcgaattata ttttcgctgc gatataacct tgagccacat
       61 caacattgat gtcagattat tattcaaacc aacattcgca cacattttaa gtattgctga
      121 tagaaaacat tctcattatc attgtgttgt tgattattta atctctcctt tgttggcaaa
      181 tcatctggtc tcatgtcgct gtcaaacgcc ccatgaggta gttatccagt taatgagaaa
      241 caagtaggca cctatgcaat acactccaga tactgcgtgg aaaatcactg gcttttcccg
      301 tgaaatcagc ccggcatatc gccaaaaact gctttctctt ggcatgttac ctggctcctc
      361 ttttaatgtg gtgcgcgtcg ctccactcgg cgaccccatt catatcgaaa cccgtcgtgt
      421 gagcctggta ttacgcaaaa aagatctggc cttattagaa gtggaagcgg tttcctgtta
      481 atacggtgat aacaacaatg aaaaaattaa ccataggctt aattggtaat ccaaattctg
      541 gcaagacaac cttatttaac cagctcactg gcgcacgtca gcgtgtaggt aactgggctg
      601 gcgttaccgt cgaacgtaaa gaagggcaat tctccaccac cgatcatcag gtcacgctgg
      661 tggacctacc cggcacctat tctctgacca ccatctcatc gcagacctcg ctcgatgagc
      721 aaatcgcctg tcactacatt ttgagtggcg acgccgacct gctgattaac gtggtggatg
      781 cgtctaacct tgagcgtaac ctgtacctga cgctacaact gctggaactc ggcattccct
      841 gcattgtggc actgaacatg ctcgacattg ccgagaagca aaatattcgt attgaaattg
      901 atgctctgtc ggcgcgtctg ggctgtccgg tgatcccgct ggtttcaacc cgtggtcgcg
      961 gtattgaagc gctcaagctg gcgattgatc gctataaagc taacgagaat gtggaactgg
     1021 tgcattacgc acagccgcta ctcaacgaag cagattcact ggcaaaagtg atgccttccg
     1081 acatcccgct gaaacaacgt cgctggctgg gcctgcaaat gctggaaggc gatatctaca
     1141 gccgcgccta cgccggtgaa gcgtcgcagc atctggatgc cgccctcgcc cgtctgcgta
     1201 atgagatgga cgatccggcg ctgcacattg ccgatgcgcg ttaccagtgc attgctgcca
     1261 tctgtgatgt ggtaagcaac accctgacgg cagaacccag ccgtttcacc actgcggtag
     1321 ataaaatcgt gctcaaccgt ttcctcggtc tgccgatttt cctctttgtg atgtacctga
     1381 tgttcctgct ggctatcaac atcggcgggg cgttacagcc gctgtttgac gtcggctccg
     1441 tggcgctatt tgtgcatggt attcaatgga ttggctacac gctccacttc ccggactggc
     1501 tgactatctt cctcgcccag ggcctgggtg gcggcattaa caccgtgctg ccactggtgc
     1561 cgcagattgg catgatgtac ctgttcctct ccttccttga ggactccggg tatatggcgc
     1621 gtgcggcgtt tgtgatggac cgtctgatgc aggcgctggg cttgccgggg aaatcctttg
     1681 tgccgctgat cgtcggtttc ggttgtaacg taccgtcggt aatgggtgca cgtacgcttg
     1741 atgcaccgcg tgaacgtctg atgaccatca tgatggcacc gtttatgtcc tgcggcgcgc
     1801 gtctggctat cttcgcagta ttcgcggctg ccttcttcgg gcagaacggt gcgctggcgg
     1861 tcttctcgct gtatatgctg ggtattgtga tggcggtgct gactggcctg atgctcaagt
     1921 acaccatcat gcgcggtgaa gcgacgccgt ttgtcatgga gttgccggtc tatcatgtac
     1981 cacacgttaa aagcctgatt atccagacct ggcagcgtct gaaaggcttc gttctgcgtg
     2041 ctggtaaagt gatcatcatc gtcagcattt tcctgagcgc tttcaacagc ttctcgctga
     2101 gcgggaaaat cgtcgataac atcaacgact cggcgctggc gtccgtcagc cgggtgatca
     2161 ccccggtctt caagccaatt ggcgtgcatg aagataactg gcaggcaacg gttggcctgt
     2221 ttacaggtgc catggcgaaa gaagtggtag tgggtacgct caacaccctc tacaccgcag
     2281 aaaatattca ggacgaagag ttcaatccgg cagagtttaa cctcggtgaa gagctgttca
     2341 gtgcgataga tgaaacctgg cagagcctga aagacacctt cagccttagc gtactgatga
     2401 accccattga agccagcaaa ggcgacggcg aaatgggtac cggggcgatg ggcgtgatgg
     2461 atcagaaatt cggtagcgca gcagcagctt acagctacct gattttcgtc ctgctgtatg
     2521 taccatgtat ctcggtgatg ggagccatcg cccgtgaatc aagccgtggc tggatgggct
     2581 tctccatcct gtgggggctg aatatcgctt actcgctggc aacattgttc tatcaggtcg
     2641 ccagctacag tcagcaccca acttacagcc tggtgtgcat tctggcggtt atcctgttta
     2701 acatcgtggt tatcggtctg ctgcgccgcg cgcgtagccg ggtggatatc gaactgctgg
     2761 caacccgcaa gtcggtaagc agttgctgcg cagccagcac caccggtgat tgccattaat
     2821 ggcttcactt attcaggtgc gcgatttgct ggcgttacgg ggccgtatgg aagcggccca
     2881 gataagccag acattgaaca ctccacagcc aatgattaac gccatgctgc aacaactgga
     2941 aagtatgggc aaagccgtgc ggattcagga agaacctgac ggctgcctct ctggcagttg
     3001 taaaagctgc ccggaaggaa aagcctgtct gcgcgagtgg tgggcgcttc gttaacctta
     3061 ctccatcgcc tgttttggaa agcccggtat gcgtctgcat ccgggctttt ttgcgtgcgg
     3121 ctttccataa aaatgcaact cttgcagcac ggcgtaagtt cctttgaaag catctcgcag
     3181 ggatgaaaac tcgctaatac acaggtgtgg agtggcgcgt agagtcgcgg cattcaaaca
     3241 acaggtgaag gaacgccatg agcaaaaagc agagttccac cccacacgat gcgctgttca
     3301 aactcttttt acgccaaccg gacacggctc gtgattttct tgcgtttcat ttacctgcac
     3361 ccattcacgc gctttgtgat atgaaaaccc tcaagctgga gtcgagcagc tttattgatg
     3421 acgatctgcg tgaaagctat tccgatgtgc tgtggtcggt gaaaacggaa caaggaccag
     3481 gatacatcta ttgtctgatt gaacatcaaa gcacctcaaa caaactgatc gcatttcgca
     3541 tgatgcgtta cgctattgcc gcaatgcaaa atcaccttga tgctggatac aaaacgttgc
     3601 cgatggtggt gccattgttg ttttaccacg gtattgaaag cccctatccc tattcgctgt
     3661 gttggctgga ttgtttcgcc gatcccaaac tggcaaggca gctttatgcc tccgcatttc
     3721 cgctgattga tgtcaccgtc atgcctgatg atgaaatcat gcagcaccga cgtatggcgc
     3781 tgctggagtt aattcaaaaa catattcgtc aacgcgacct gatggggcta gtagagcaaa
     3841 tggcctgctt attaagtagt ggatacgcta atgacagaca aatcaaaggg ctgtttaatt
     3901 acatactgca aaccggcgac gcggtacgtt ttaacgattt tatcgacggc gttgccgaac
     3961 gttcaccgaa acacaaggag agtttaatga caattgcgga aagattgcgg caggaggggg
     4021 aacaatccaa agccctgcat atagccaaaa taatgcttga atccggagtc cctcttacag
     4081 acatcatgcg ctttaccggg gtgtcagaag aagagttggc tgcggcgagc cagtaaattt
     4141 ctgtctcgcc atttcaaaag ttgcctacac cctctgcttc aacgccacca gcaggtgaca
     4201 aaactcgacc ggatgcgaaa taaacggcgc atgggccgct ttggcgaaga tatatgattt
     4261 gctgcgaggc cagagtttat ccagcatcgg caccactttg cgcggcacca gaccatcgag
     4321 atagccatac aatcgcaaaa acggcatggg cacgttttgc agcggctgac ggagatcaac
     4381 cgttttcagg atttccagcc cgccattaag cacgtcaacc tccggcatcg gtaacgccag
     4441 aacggttttc ttcaacgccc gcgcatcctg gcgcgccgtt tcagtcccca tggtttgtaa
     4501 cgccaggaac cgctccactg tacgctgaaa atcatcactg agttgctgct gaaatcccgc
     4561 cagcacgtcc ggttttatcc ccggccaatc gtcacgagca ctaaaacaag gtgacgacgc
     4621 cacggtgacc agcgcctgaa cacgctcggg atgggttaac gcaatctggc ttgccaccag
     4681 cccgcccaga ctccagccta accaaatggc tttatcaggt gcctgttgca gcacggcttc
     4741 ggccatatca gcaagtgaca gcgcaccaaa tccctggctg cgcccgaagc cgggcagatc
     4801 aacaaggtgc agcgtaaaat gcgagctaag ttcctcgtca atgcaacgcc acacttcggc
     4861 attcagtccc catccgtgca gcagcacaag atgaacattc ccctgacctt tggtctgcca
     4921 ccagatgtta ttcatccgct attgttctct tttgacttac aaggatgaac atatgctaac
     4981 agtaccggga ttatgctggc tatgccgaat gccgctggcg ttaggtcatt gggggatttg
     5041 ttcggtctgc tcacgcgccg cccgtacaga taaaacgtta tgcccacaat gtggattacc
     5101 cgccacacac tcacatcttc cctgcggtcg cagcctgcaa aaaccaccgc cctggcaaag
     5161 actggtcacg gttgccgact atgcgccgcc gttaagtccg cttatccacc agcttaaatt
     5221 ttcccggcgc agtgaaatcg ccagcgccct gtcacgtctg ttactattgg aagtcttaca
     5281 cgctcgtcgc accaccgggt tgcaattgcc ggatcgcatc atcagcgttc cgttatggca
     5341 gcggcgtcac tggcgtcggg gatttaatca gagcgatttg ctgtgtcagc cgttatcacg
     5401 ctggttgcac tgccgatggg atagcgaagc cgtcacacga acacgggcca ctgcgaccca
     5461 gcattttctc agtgcccggc tacgcaagcg caacctgaaa aatgcctttc gtcttgaatt
     5521 gcccgtgcaa ggtcgccata tggtgattgt ggatgatgtc gttaccaccg gaagtaccgt
     5581 cgcagagatt gcgcagttgc ttttacgcaa tggtgcggcg actgtccagg tctggtgcct
     5641 ttgtcgaacc ttgtagagcc tcgatgatgg gcgtattata accaactaaa atagtcaact
     5701 attaggccat tactatgatc cgtatttccg atgctgcaca agcgcacttt gccaaactgc
     5761 tggcaaacca ggaagaaggg acacaaatcc gcgtatttgt gattaaccct ggcacgccta
     5821 acgctgaatg tggtgtttct tattgtccgc cggatgccgt ggaagccacc gacactgccc
     5881 tgaaatttga cctgctgacc gcgtatgttg atgagttaag cgctccttac ctggaagatg
     5941 cagagatcga ttttgttacc gaccagttgg gttctcagct aacactgaaa gcgcctaacg
     6001 ccaaaatgcg taaagtggca gacgatgcac cactgatgga gcgcgtggag tatatgctgc
     6061 agtcgcagat caacccacag cttgctggtc acggtggccg cgtttcactg atggaaatca
     6121 ccgaagacgg ttacgccatt ctgcaatttg gcggcggctg taacggttgt tccatggtcg
     6181 atgtgacgct gaaagaaggg atcgagaagc agctgctaaa cgaattcccg gagctgaaag
     6241 gtgtgcgcga tctcaccgaa caccagcgcg gcgaacactc ctactactaa gttatcccct
     6301 cttttgtaga ttgcccgatg cgacgctaaa gcgtcatttc gggcctacgt tgaacatgtg
     6361 ccagacgttg gcgcagcatt gctttggcaa atccctccct tcgtttctcc gcgataatat
     6421 gaccaacctc tcataattta aatttactcc gctctggtga ttctcaaacg ccagatgtta
     6481 cccgtatcat tcacatgggt accaaacata ctcctgacat ctgactacaa taattagttt
     6541 tagtgggtat cagtcgtggt gccgcaatat ctctgttccc gattgggata attagagttt
     6601 gtcgtcagaa aattgacgtt acccataaca aatgaagggc caggtaaatc atgccattag
     6661 tcattgttgc tatcggtgta atcttgttgt tgctcctgat gatccgtttc aaaatgaacg
     6721 gcttcatcgc tctcgtcctc gtggcgcttg ctgttggatt aatgcaaggg atgccgctgg
     6781 ataaagttat tggctccatc aaagccggtg tcggcgggac gctcggtagc cttgccctga
     6841 tcatgggttt tggcgcgatg ctgggcaaaa tgctggcaga ctgcggtggc gcacaacgta
     6901 tcgccaccac cctgattgcc aaatttggta aaaaacacat ccagtgggcg gtggtactga
     6961 ccggttttac cgttggtttt gccctgttct atgaagtggg ctttgtgctg atgctgccgc
     7021 tggtgtttac catcgcggct tctgcgaata ttccactgct gtatgttggt gtaccaatgg
     7081 cagctgcact gtctgtgacc cacggcttcc tgccaccgca tccgggtccg actgcgattg
     7141 ccaccatttt caatgccgac atgggtaaaa ccctgctgta cggtactatt ctggcaatcc
     7201 cgaccgtgat tctcgccggt ccggtttacg ctcgcgtgtt gaaaggtatc gataagccga
     7261 tccctgaagg tctgtacagc gcgaaaacct tcagcgaaga agagatgccg agctttggcg
     7321 tcagcgtctg gacctctctg gtgccggtag tgctgatggc gatgcgtgcg attgccgaaa
     7381 tgatcctgcc gaaaggtcac gctttcctgc cggtagcgga gttcctcggt gacccggtaa
     7441 tggctacgct gattgccgtg ctgattgcga tgttcacctt tggtctgaac cgtggtcgtt
     7501 caatggatca gattaacgac acgctggttt cttccatcaa aatcattgcg atgatgctgt
     7561 tgatcatcgg tggtggcggt gcgttcaagc aggtgctggt agacagcggc gtggacaaat
     7621 acattgcttc catgatgcac gaaaccaaca tttctccgct gctgatggcc tggtcgattg
     7681 ctgccgtact gcgtatcgcg ctgggttccg caaccgttgc ggcaatcact gcgggtggta
     7741 tcgcggcacc gctgattgca acgacgggtg ttagcccgga gctgatggtt attgcggtgg
     7801 gttccggtag tgtgattttc tctcatgtga acgatccggg cttctggctg ttcaaagagt
     7861 actttaacct gactatcggc gagaccatca aatcctggtc gatgctggaa accattatct
     7921 cggtgtgcgg tctggtaggc tgtctgctgc tgaatatggt gatttgataa cactgactgc
     7981 cggatgcatc gcatccggca tcaaccgcac tctactgctt cttcgctgca gctctgcgcc
     8041 gtctgtccaa atccttcagc aacttattca cgccatcatc ggcaaacatc atctcaagcg
     8101 ttgcggaaag cttgcgtcgc cagtttttat actggtaact ggtgccagga atattcaccg
     8161 gttcggccat atccagccag tcttccggct gtagtcctaa cagagcactg ttactgtcgg
     8221 caatgtagcg ctgcaaacca cgattaagcg tcggcgtcat cgacatcaac gatgccttat
     8281 gcccggcacg ttttggcaga caaccatatt tatgcagtgc atccagcagc ccttgcttcg
     8341 ccagttcgcg atcctgatac agaccgcgca gtaccacttc atccggatac agccccaggg
     8401 ttttgcccaa cgttagatcc ccgctctccc agtaaccgcg cagcgtaggc aggtcatgtg
     8461 tcgccgcaac cgccatcgac tgctccggat acgctttcgg tgcacggaac gtcttctcgt
     8521 ggtcgttttc gaaatagagc actttgtagg agtacacacc gctgctgcgc agcttaccga
     8581 caatctccac cggtacggta ccgagatctt caccaatcac catacagcga tgacgtttac
     8641 tttcgagtgc cagaatcgag agcagattat ccaccggata gtgaacatac gcgccctgat
     8701 ctgccgtctc gccatacggt atccaccaca aacgcagcat cgacatcaca tggtcaattc
     8761 gtaatgcgcc gcagttttgc atattggcac gcaacagctc gataaacggt tcataggcac
     8821 gcgcggtgat gatatgcggg tccattggcg gtaatcccca gttctgcccc aacgggccga
     8881 ggatatccgg cggcgcgcca accgacgctt tcaggcaata tagttcacgg tcacaccagg
     8941 tttccgcccc accttccgct acgccaaccg ccagatcacg atacaagcca atcggcattt
     9001 catagccctg gcttatctcc cagcaggcgg caaactggct gtaagccagc cactgcaacc
     9061 agagataaaa atcgacgtca tcacgatgtt cttcgcagaa ctgacgcact tctggtgaat
     9121 ccacgttctg atacatctct ggccatgcag gccagcccca gcgcatttcg tcctctttca
     9181 cttgctgggc atgtagcgca tcaaaggctg cctgccagaa caggctgtcg ccctgctctg
     9241 caacaaactg gcgaaacgcg gtcatctgct catcatcacg ttgcgcgaaa cctttccacg
     9301 ccattcgtaa tgctgtcatt tttagggcgg taaccgtgga gtaatcgacc cagtcggcat
     9361 cgcgcgcctg ttgcagcgtc tgttgcgtgg tcggcaactg ccaccaggcc tgagcctctt
     9421 cgctaagatg gaaatcttca acggcgttaa cgtcgatata aatcacattc agccaacggc
     9481 gagaagacgg gctgtatggg ctggcactct ccggatttgc cggatagagc gcatgaatcg
     9541 ggttcaggcc gatgaacgac ccgccacgtt ttgccacatc caccagcatc gctttgagat
     9601 cgccaaaatc cccaataccc cagttttttt ccgatcgcag cgtataaagc tgaacgcagg
     9661 caccccacag cttttgttta ttcagcaacg cctgcggttc gtaacagcgt ttcggggcga
     9721 caatcacccg gcaatgcgcg cgctggtcgt cctgggtgag tgtcagtgtg tgataacctt
     9781 ccggcagctt cgtcggtaga ttgaacgctt tgccccccgt tacatggcct ttgtactgtg
     9841 ttccttcttc ggtggtcagc agccagctat attcgccgct gccctccacc accatcggca
     9901 tttttttgcc gctggtataa accatgacat tcgggactgg cgttaccgcc actttcgtgg
     9961 cggtacgttg atgcatcgcg tcaagcaaac gccgtttggt ttcggcgcta atcgactgcg
    10021 gtttaccgtg ggcattgatg taattggggc taatccccgc cgccagcgcg gcattatcca
    10081 gacgtttgct ttccatcgag cttccttagc gttttgcctg ccagatacga gcctgataat
    10141 cgcgaataga gcgatccgag ctaaacatac cgcagcgggc ggtattgagg atcgccacgc
    10201 gagtccaggc ctcctggtcg cggtacagca catccacctg cttttgtgcc tcaacatagg
    10261 ctgcgaaatc cgccatcacc agatacggat cgccgccttg tttgccgata ctgtgcagca
    10321 tctggtcgaa ggcatgctta tcgccgtcgc tgtatttacc gctttccagc tctttcaata
    10381 ctgcgtccag caccttatct ttcttccgcc atttcaccgg gtcgtagcct ttggccagaa
    10441 ttgccttcac ttgttccacg gtatgaccaa aaataaagat attttcttca ccgactttct
    10501 cggcgatttc aacgttcgca ccatccagcg taccgacagt aagcgcacca ttgagcgcca
    10561 gtttcatatt gccggtaccg gaagcttctt tacctgcagt cgaaatttgt tcggagatat
    10621 ccgccgccgg gatcagtttt tccgccgccg aaacacaata atccggcagg aacaccacct
    10681 tcaacttatc gccaaccagt ggatcgttgt tgatcacgtc agccactttg ttgatcgcaa
    10741 agataatatt cttcgccagg tagtagcccg gtgccgcttt cgcgccgaag aggaagacgc
    10801 gcggtacgcg atcagcctgc gggttttcac gaatttcttt gtacaacgcc agaatatgca
    10861 gcagattcag gtgctggcgt ttgtactcat gcagacgttt aatctgaata tcgaaaatcg
    10921 cctgtggatt gatctcaata ccggtacgaa ctttcacaaa ctccgccaga cggactttat
    10981 tcgcctgctt gatctcgcga tattgctgac ggaatttcgc atcatcagcg aatttttcca
    11041 gattgatcag ctgatcgaga tcgttagccc actctttttg cagtaattta tccaacagag
    11101 ccgccagtgc agggttgcac tgtttgatcc agcgacgtgg ggtaataccg ttggtgacgt
    11161 tatggaattt gttcggccat agctggtgat attccgggaa cagatctttc accaccagat
    11221 cagagtgcag cgccgcaaca ccgttcaccg cgaaaccgcc aaccacacac aggttcgcca
    11281 tatgcacttg tttatcgtgc accaccgcca gtttggccca cactttttca tcgcccggcc
    11341 aggttttctc caccagcgtt ttaaagcgag tattaatttc gttaataatc tgcatatggc
    11401 gcggcagtaa gcctttcacc agtttcacat cccagcgttc cagcgcttct ggcatcaggg
    11461 tatggttggt gtaagcgaaa gttttgctgg taatggccca ggcgtcatcc cagctcatct
    11521 ggtgctcatc gatcagcacg cgcagcagtt ctggaatcgc gatagttggg tgggtatcgt
    11581 tcagctgaat aacttcataa tccgccagtt cgtgcagttt acgccccgcc agatgatggc
    11641 gacgcaaaat atccgctacc gaacaggcac actggaagta ctgctgcatc aagcgcagct
    11701 ttttaccggc agtatggttg tcgtttggat agagaacttt ggtcagtttt tccgcattga
    11761 tgccctgctg ttcggcacgc aggaaatcac cgtcgttaaa tttagtcaga tcaaacggat
    11821 gcgcgtgcgt cgcctgccac agacgcagcg gctgcgccac gccattacga tagccgacaa
    11881 cggggagatc ccacgcttga ccggtaatgg taaactccgg ctcccagcgt ccgtctttcg
    11941 tcactttacc gccaatccct acctgcacat ccagtgcttc gttgtggcgg aaccacgggt
    12001 agttactgcg atgccagtca tccggcgctt caacctgttt gccatcgaca aaagactggc
    12061 ggaacaaacc atattgatag ttcagaccgt aacccgtcgc agactgaccg atagttgcca
    12121 ttgagtcgag gaagcacgcc gccagacgtc ccagaccacc gttacccagc gccgggtcga
    12181 tctcttcttc cagcaggtcc gtcagattga tgtcataagc cttcaacgaa tcctgtacat
    12241 cctgatacca gccgagattc aacaggttgt tgcccgtcag gcgaccaatc aaaaactcca
    12301 ttgagatgta gttaacatgt cgctgattcg ccaccggctt ggcgaatggc tgagcacgca
    12361 gcatttcggc cagtgcttca ctcactgcta gccaccactg gcgaggagtc atttcagccg
    12421 cagaatttaa gccataacgc tgccactgac gtgaaagcgc ttcctgaaat tgcttatcgt
    12481 taaaaatagg ttgtgacata ggagttccac ttttcttaga ttttcaacac aacgttatcg
    12541 ctagtttgcc aggctcgatg ttgaccttcc tcatcctgcg ggggattagg cagggaggag
    12601 ttgcggggat gagcaaggaa atgtgatctc aaccacttaa agctagtgca aaccacagga
    12661 ttagcagcaa atcaatgcaa tacagcgcag aaaatctgta tctaagtgca aaaaatggcc
    12721 gttgcgtatt ttcaaaaagc ggaaggtaac tctataaatt aagtaaagga gtgaaacagt
    12781 ttcacaagta aaatatccag tgtgctccat ctcattctta atagatttat taagatcatc
    12841 tttttagatg gcactttcat caggaatgaa gaagaaaccc ttgcttaaat gaatctgatg
    12901 aacataaggg aaaccagtat tcacgctgga tcagcgtcgt tttaggtgag ttgttaataa
    12961 agatttggaa ttgtgacaca gtgcaaattc agacacataa aaaaacgtca tcgcttgcat
    13021 tagaaaggtt tctggccgac cttataacca ttaattacga agcgcaaaaa aaataatatt
    13081 tcctcatttt ccacagtgaa gtgattaact atgctgattc cgtcaaaact aagtcgtccg
    13141 gttcgactcg accataccgt ggttcgtgag cgcctgctgg ctaaactttc cggcgcgaac
    13201 aacttccggc tggcgctgat cacgagtcct gcgggctacg gaaagaccac cctcatttcc
    13261 cagtgggcgg caggcaaaaa cgatatcggc tggtactcgc tggatgaagg tgataaccag
    13321 caagagcgtt tcgccagcta tctcattgcc accgtgcagc aggcaaccaa cggtcactgt
    13381 gcgatatgtg agacgatggc gcaaaaacgg caatatgcca gcctgacgtc actcttcgcc
    13441 cagcttttca ttgagctggc ggaatggcat agcccacttt atctggtcat cgatgactat
    13501 catctgatca ctaatccagt gatccacgag tcaatgcgct tctttattcg ccatcaacca
    13561 gaaaatctca ccctggtggt gttgtcacgc aaccttccgc aactgggcat tgccaatctg
    13621 cgtgttcgtg accaactgct ggaaattggc agtcagcaac tggcatttac ccatcaggaa
    13681 gcgaagcagt tttttgattg ccgtctgtca tcgccgattg aagccgcaga aagcagtcgg
    13741 atttgcgatg acgtttccgg ttgggcgacg gcactacagc taatcgccct ctccgcccgg
    13801 cagaataccc actcagccca taagtcggca cgccgcctgg cgggaatcaa tgccagccat
    13861 ctttcggatt atctggtcga tgaggttttg gataacgtcg atctcgcaac gcgccatttt
    13921 ctgttgaaaa gcgccatttt gcgctcaatg aacgatgcgc tcatcacccg tgtgaccggc
    13981 gaagaaaacg ggcaaatgcg tctcgaagag attgagcgtc aggggctgtt tttacagcgg
    14041 atggatgata ccggcgagtg gttctgctat cacccgctgt ttggcaactt cctgcgccag
    14101 cgctgccagt gggaactggc ggcggagctg ccggaaatcc accgtgccgc cgcagaaagc
    14161 tggatggccc agggatttcc cagcgaagcg attcatcatg cgctggcggc aggcgatgcg
    14221 ctgatgctgc gcgatattct gcttaatcac gcctggagtt tgttcaacca tagcgaactg
    14281 tcgctgctgg aagagtcgct taaggccctg ccgtgggaca gtttgctgga aaatccgcag
    14341 ttagtgttat tgcaggcgtg gctaatgcaa agccaacatc gctatggcga agttaacacc
    14401 ctgctagccc gtgctgaaca tgaaatcaag gacatcagag aaggcaccat gcacgcagaa
    14461 tttaacgctc tgcgcgccct ggtggcgatt aacgatggta atccggatga agcggaacgg
    14521 ctggcaaaac tggcactgga agagctgcca ccgggctggt tctatagccg cattgtggca
    14581 acctcggtgc tgggtgaagt gctgcactgc aaaggcgaat tgacccgctc actggcgcta
    14641 atgcagcaaa ccgaacagat ggcacgccag cacgacgtct ggcactacgc cttatggagt
    14701 ttaatccagc aaagtgaaat tctgtttgcc caagggttcc tgcaaaccgc gtgggaaaca
    14761 caggaaaaag cgttccagct gatcaacgag cagcatctgg aacagctgcc gatgcatgag
    14821 tttctggtgc gcatccgagc acaactgtta tgggcctgag cacggctgga tgaagccgaa
    14881 gcgtcggcgc gtagcgggat tgaagtcttg tcgtcttatc agccacagca acagcttcag
    14941 tgcctggcaa tgttgattca atgctcgctg gcccgtggtg atttagataa cgcccgtagc
    15001 cagctgaacc gtctggaaaa cctgctgggg aatggcaaat atcacagcga ctggatctct
    15061 aacgccaaca aagtccgggt gatttactgg caaatgaccg gcgataaagc cgccgctgcc
    15121 aactggttgc gtcatacggc taaaccggag tttgcgaaca accacttcct gcaaggtcaa
    15181 tggcgcaaca ttgcccgcgc acaaatcttg ctgggcgagt ttgaacctgc ggaaattgtt
    15241 ctcgaagaac tcaatgaaaa tgcccgcagt ctgcggttga tgagcgatct caaccgtaac
    15301 ctgttgctgc ttaatcaact gtactggcag gccggacgta aaagtgacgc ccagcgcgtg
    15361 ttgctggacg cattaaaact ggcgaatcgc accggattta tcagtcattt tgtcatcgaa
    15421 ggcgaagcga tggcgcaaca actgcgccag ctgattcaac tcaatacgct gccggaactg
    15481 gaacagcatc gcgcgcagcg tattctgcga gaaatcaatc aacatcatcg gcataaattc
    15541 gcccatttcg atgagaattt cgttgaacgt ctgctaaatc atccggaagt gccagaactg
    15601 atccgcacca gcccgttgac ccaacgtgaa tggcaggtcc tggggctgat ctactccggt
    15661 tacagcaatg agcaaattgc gggcgagctg gaagtggcgg caaccaccat caagacgcat
    15721 atccgcaatc tgtaccaaaa actcggcgtc gcccaccgtc aggccgcggt acaacacgcg
    15781 cagaaactgc tgaagatgat gggatatggg gtgtgagttt agccggataa tgcattggat
    15841 ccggtttaca tctttacatc attcaatact cacccgcgtt acgccatctg tttctatcaa
    15901 accaaaccgc accggcaaga aacgctccac cacggcgata ttggtcagca gatggcatga
    15961 aggatgggcg accgtaaatt ctcccgcgcc cgccagcgcc atcggtagca ccagctggtc
    16021 ggcgagatat tcccccactg ccgccgggct tgccaggtag cgtttcacct ctttcactaa
    16081 ctgcgcggct accacctcgg cactgacgcg cttttcaccg acgacgaaaa agcgttcagt
    16141 gatattttca ctttcgactt ccagcgagac ggtattaccc ggcccctggt cgcgcggcag
    16201 gttatgaata ttctgttcat gcagggaaaa actccccgcc agtgtagcga tttcacgctc
    16261 agcaacatgg cgcggcacac cagctaatag aacttctcca cgcatctgca caatgttccc
    16321 gcgctcgcca agttgcaagg tgttaaacga tgccacgggc gagacttccg ttgccaccac
    16381 gccgcctccg gcaggataaa aaccgtgacg taacagcgtg gtttgctgat gaattcctat
    16441 tttcgccagc agcggctcca gcacccggcg gataaaatcc gcaggcggcg ccgacgggtt
    16501 atcggtgcct ccgctcactt caacacgcga aggtccatcg gcaaaccaca gcgcgggcag
    16561 caccgtttgc agcaccagcg tacagcttcc ggcactaccg atagcaaagc ggtactcgcc
    16621 gccgcgcacg gcgccaggcc ggaagaccag acgctgcgac cccagctccg cgccttccac
    16681 cgttgcccta caaatttccg cagccgcttt taccgcggtc agatgctggc gcaacagccc
    16741 cggtttcgcc cgcccggcac gaatgctggt gatggtaaat ggctggccgg ttatcatcga
    16801 caggctcagc gccgcgcgca gaatctgccc gccaccttcg ccctgtgcgc catccagcgc
    16861 aatcatcctt ttcatcattt atccttttac gcacaccacc tgacgcaggg tatagataac
    16921 ttccaccaga tcgctttgtg ccgtcatcac cgcatcaata tctttatacg ccatcgggat
    16981 ttcgtcgatc acttcggcat ctttacggca ttccacatgc gcggtggcac gaatttgatc
    17041 ttccacgctg aacagttttt tcgctttagt tcggctcatt acccgcccgg caccgtggct
    17101 gcacgaacag aacgactctt catttcccag cccacggacg ataaagcttt ttgctcccat
    17161 cgaaccggga ataattccat attgaccagc acgcgcagac accgcgcctt tacgcgtcac
    17221 gtagatctct tcaccaaagt gctgttcttt ttgcacatag ttgtggtgac agttgatctc
    17281 ttccatcgcc agcgtttgtg gctgtctgac cgttttctgc gtaatgctct gcaatgccgt
    17341 taccacgttt tccatcatcg catcgcggtt aaggctggca aaaagctgcg cccaggccac
    17401 ggctttcagg taatcatcaa agtattccgt accttccata aagtacgcca gatcacgcga
    17461 cggcaacgtc tcaagcgttt cctgcatctc tttttgtgcc agatcgataa agtaagtccc
    17521 gatggcgtta ccaattccgc gtgaaccgga gtgcagcata atccacacct ggtccgactc
    17581 atcaaggcag attttaataa agtggttacc ggttcccagc gttcccaggt gtttatagtt
    17641 attggtattc aggaaacggg gatatttttg cgttaaccac tgataaccgg cttcaagctc
    17701 agcccatttc gcatcgacgt taacaggcgg gttttcccat gcgcctttat cacgtttaca
    17761 acgcccggta gtacgcccgt gcggcacggc cgtttcaatc gcctgacgca gctctgccag
    17821 gttttcaggc aggtcttccg ccgttaacgc ggtacgcagc gcgttcattc cacagccaat
    17881 atccacgccc accgccgccg gaataatcgc ccctttggtc gggatcacgc taccaatggt
    17941 ggaatcttta cccaggtgta catcaggcat taccgcaata tgtttgaaaa taaacggcat
    18001 cttcgccgta ttaataagtt gctgacgcgc atcggcttct accggcacgc ctttggtcca
    18061 catttttacc ggggcatttt cagtggtcag taattcgtaa ttcattttgt ttttctcttt
    18121 tcgttgtttg ctgtcctgat aattgcaacc gtcg
//
LOCUS       DADMHM010000066        17715 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.067, whole genome shotgun sequence.
ACCESSION   DADMHM010000066 DADMHM010000000
VERSION     DADMHM010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17715)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17715)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17715
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.067"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            6..866
                     /gene="pdxY"
                     /locus_tag="JN125_002006"
     CDS             6..866
                     /gene="pdxY"
                     /locus_tag="JN125_002006"
                     /EC_number="2.7.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310372.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal kinase PdxY"
                     /protein_id="HAY8871797.1"
                     /translation="MKNILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLSTVQFSNHT
                     QYGKWTGCVMPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKAA
                     NPQAKYFCDPVMGHPEKGCIVAPGVAEFHVRHGLPASDIIAPNLVELEILCEHAVNNV
                     EEAVLAARELIAQGPQIVLVKHLARAGYSRDRFEMLLVTADEAWHISRPLVDFGMRQP
                     VGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVTTKAMQEYELQVVAAQDRIAK
                     PEHYFSATKL"
     gene            complement(910..1515)
                     /gene="gstA"
                     /locus_tag="JN125_002007"
     CDS             complement(910..1515)
                     /gene="gstA"
                     /locus_tag="JN125_002007"
                     /EC_number="2.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione transferase GstA"
                     /protein_id="HAY8871798.1"
                     /translation="MKLFYKPGACSLASHITLRESGKDFTLVSVDLMKKRLENGDDYF
                     AVNPKGQVPALLLDDGTLLTEGVAIMQYLADSVPDRQLLAPVNSISRYKTIEWLNYIA
                     TELHKGFTPLFRPDTPEEYKPTVRAQLEKKLQYVNEALKDEHWICGQRFTIADAYLFT
                     VLRWAYAVKLNLEGLEHIAAFMQRMAERPEVQDALSAEGLK"
     gene            complement(1621..3123)
                     /gene="dtpA"
                     /locus_tag="JN125_002008"
     CDS             complement(1621..3123)
                     /gene="dtpA"
                     /locus_tag="JN125_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide/tripeptide permease DtpA"
                     /protein_id="HAY8871799.1"
                     /translation="MSTANQKPTESVSLNAFKQPKAFYLIFSIELWERFGYYGLQGIM
                     AVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY
                     ALVAWSGHDAGIVYMGMAAIAVGNGLFKANPSSLLSTCYEKNDPRLDGAFTMYYMSVN
                     IGSFFSMIATPWLAAKYGWSVAFALSVVGLLITIVNFAFCQRWVKQYGSKPDFEPINY
                     RNLLLTIIGVVALIAIATWLLHNQEVARMALGVVAFGIVVIFGKEAFAMKGAARRKMI
                     VAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGLAVEPEQYQALNPFWIIIGSP
                     ILAAIYNKMGDTLPMPTKFAIGMVMCSGAFLILPLGAKFASDAGIVSVSWLVASYGLQ
                     SIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGANLIGGYVAGMMAVPDNVTDP
                     LMSLEVYGRVFLQIGVATAIIAVLMLLTAPKLHRMTQDDAADKAAKAAVA"
     gene            complement(3734..4369)
                     /gene="nth"
                     /locus_tag="JN125_002009"
     CDS             complement(3734..4369)
                     /gene="nth"
                     /locus_tag="JN125_002009"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HAY8871800.1"
                     /translation="MNKAKRLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATD
                     VSVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG
                     EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVE
                     EKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEKVDI"
     gene            complement(4369..5064)
                     /locus_tag="JN125_002010"
     CDS             complement(4369..5064)
                     /locus_tag="JN125_002010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit E"
                     /protein_id="HAY8871801.1"
                     /translation="MSEIKDVIVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLA
                     TTLVLTLTNLTISTLRHWTPAEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFI
                     PLIVTNCIVVGRAEAFAAKKGPALSALDGFSIGMGATCAMFVLGSLREIIGNGTLFDG
                     ADALLGSWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLMLAGKYLIDERMKKRRTEAA
                     AERALPNGETGNV"
     gene            complement(5068..5688)
                     /gene="rsxG"
                     /locus_tag="JN125_002011"
     CDS             complement(5068..5688)
                     /gene="rsxG"
                     /locus_tag="JN125_002011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxG"
                     /protein_id="HAY8871802.1"
                     /translation="MLKTIRKHGITLALFAAGSTGLTAAINQMTKTTIAEQASLQQKA
                     LFDQVLPAERYNNALAQSCYLVTAPELGKGEHRVYIAKQDDKPVAAVLEATAPDGYSG
                     AIQLLVGADFNGTVLGTRVTEHHETPGLGDKIELRLSDWITHFAGKKISGADDAHWAV
                     KKDGGDFDQFTGATITPRAVVNAVKRAGLYAQTLPAQLSQLPACGE"
     gene            complement(5692..6750)
                     /gene="rsxD"
                     /locus_tag="JN125_002012"
     CDS             complement(5692..6750)
                     /gene="rsxD"
                     /locus_tag="JN125_002012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxD"
                     /protein_id="HAY8871803.1"
                     /translation="MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLWFFGWGTL
                     VQILLASVSTLLAEALVLKLRKQSVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGT
                     VFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQ
                     VIFSGHTASGADMNTLHLGIDGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGA
                     GWQWVNLAWLAGGLWLLWQKAIRWHIPLSFLVTLALCATLGWLFSPETLAAPQIHLLS
                     GATMLGAFFILTDPVTASTTNRGRLIFGALAGLLVWLIRSFGGYPDGVAFAVLLANIT
                     VPLIDYYTRPRVYGHRKG"
     gene            complement(6751..8877)
                     /gene="rsxC"
                     /locus_tag="JN125_002013"
     CDS             complement(6751..8877)
                     /gene="rsxC"
                     /locus_tag="JN125_002013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxC"
                     /protein_id="HAY8871804.1"
                     /translation="MLKLFSAFRKNKIWDFNGGIHPPEMKTQSNGTPLRQVPLAQRFV
                     IPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLPVHAPTSGTVTAIAPHSTAHPSA
                     LAELSVIIDADGEDCWIPRDGWADYRTRSREELIERIHQFGVAGLGGAGFPTGVKLQG
                     GGDKIETLIINAAECEPYITADDRLMQDCAAQLVEGIRILAHILQPREILIGIEDNKP
                     QAISMLRAVLADSNDISLRVIPTKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNV
                     GTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRHLLNDARFCPSADQM
                     VIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQSCIRCSACADACPADLL
                     PQQLYWFSKGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEE
                     KRAAEAKARFEARQARLEREKAARLERHKSAAVQPAAKDKDAIAAALARVKEKQAQAT
                     QPIVIKAGERPDNSAIIAAREARKAQARAKQAELQQTNDAATVADPRKTAVEAAIARA
                     KARKLEQQQANAEPEEQVDPRKAAIEAAIARAKARKLEQQQANAEPEEQVDPRKAAVE
                     AAIARAKARKLEQQQANAVPEEQVDPRKAAVEAAIARAKARKLEQQQTNAEPEEQVDP
                     RKAAVAAAIARAQAKKAAQQKVVNED"
     gene            complement(8870..9448)
                     /gene="rsxB"
                     /locus_tag="JN125_002014"
     CDS             complement(8870..9448)
                     /gene="rsxB"
                     /locus_tag="JN125_002014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxB"
                     /protein_id="HAY8871805.1"
                     /translation="MNAIWIAVAAVSLLGLAFGAILGYASRRFAVEDDPVVEKIDKIL
                     PQSQCAQCGYPGCRPYAEAISCNGEKINRCAPGGEAVMLKIAELLNVEPQPLDGEAQE
                     LTPARMVAVIDENNCIGCTKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTH
                     CISLQPVAETPDSWKWDLNTIPVRIIPVEHHA"
     gene            complement(9448..10029)
                     /gene="rsxA"
                     /locus_tag="JN125_002015"
     CDS             complement(9448..10029)
                     /gene="rsxA"
                     /locus_tag="JN125_002015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017456621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transport complex subunit RsxA"
                     /protein_id="HAY8871806.1"
                     /translation="MTDYLLLFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAMGMGLA
                     TTFVMTLASICAWLIDTWILIPLNLIYLRTLAFILVIAVVVQFTEMVVRKTSPVLYRL
                     LGIFLPLITTNCAVLGVALLNINLGHNFLQSALYGFSAAVGFSLVMVLFAAIRERLAV
                     ADVPAPFRGNAIALITAGLMSLAFMGFSGLVKL"
     gene            complement(10106..10546)
                     /locus_tag="JN125_002016"
     CDS             complement(10106..10546)
                     /locus_tag="JN125_002016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707526.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2569 domain-containing protein"
                     /protein_id="HAY8871807.1"
                     /translation="MTTTTPQRIGGWLLGPLAWLLVALLSTTLALLLYTAALSSPQTF
                     QTLGGQALTTQILWGVSFITAIAMWYYTLWLTIAFFKRRRCVPKHYIIWLLISVLLAV
                     KAFAFSPVEDGIAVRQLLFTLLATALIVSYFKRSSRVKATFVNP"
     gene            complement(10632..10847)
                     /gene="ydgT"
                     /locus_tag="JN125_002017"
     CDS             complement(10632..10847)
                     /gene="ydgT"
                     /locus_tag="JN125_002017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription modulator YdgT"
                     /protein_id="HAY8871808.1"
                     /translation="MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAAD
                     HRRAELVSGGRLFDLGQVPKSVWHYVQ"
     gene            complement(11120..11245)
                     /gene="blr"
                     /locus_tag="JN125_002018"
     CDS             complement(11120..11245)
                     /gene="blr"
                     /locus_tag="JN125_002018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division septum protein Blr"
                     /protein_id="HAY8871809.1"
                     /translation="MNRLIELTGWIVLVVSVILLGVASHIDNYQPPEQSASVQHK"
     gene            11488..12528
                     /locus_tag="JN125_002019"
     CDS             11488..12528
                     /locus_tag="JN125_002019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310359.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HAY8871810.1"
                     /translation="MSDNIRVGLIGYGYASKTFHAPLIAGTPGLELAVISSSDETKVK
                     ADWPTVTVVSEPKHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVVDKPFTVTLS
                     QARELDALAKSLGRVLSVFHNRRWDSDFLKLKGLLAEGVLGEVAYFESHFDRFRPQVR
                     DRWREQGGPGSGIWYDLAPHLLDQAITLFGLPVSMTVDLAQLRPGAQSTDYFHAILSY
                     PQRRVILHGTMLAAAESARYIVHGSRGSYVKYGLDPQEERLKNGERLPQEDWGYDMRD
                     GVLTRVEGEERVEETLLTVPGNYPAYYAAIRDALNGDGENPVPASQAIQVMELIELGI
                     ESAKHRATLCLA"
     gene            complement(12563..13564)
                     /gene="add"
                     /locus_tag="JN125_002020"
     CDS             complement(12563..13564)
                     /gene="add"
                     /locus_tag="JN125_002020"
                     /EC_number="3.5.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosine deaminase"
                     /protein_id="HAY8871811.1"
                     /translation="MIDTTLPLTDIHRHLDGNIRPQTILELGRQYNISLPAQSLETLI
                     PHVQVIANEPDLVSFLTKLDWGVKVLASLDACRRVAFENIEDAARNGLHYVELRFSPG
                     YMAMAHKLPVAGVVEAVIDGVREGCRTFGVQAKLIGIMSRTFGEAACQQELEAFLAHR
                     DQITALDLAGDELGFPGSLFLSHFNLARDAGWHITVHAGEAAGPESIWQAIRELGAER
                     IGHGVKAIEDRALMDFLAEQQIGIESCLTSNIQTSTVAELAAHPLKTFLEHGIRAGIN
                     TDDPGVQGVDIIHEYTVAAPAAGLSREQIRQAQINGLEMAFLSAEEKRALREKVAAK"
     gene            complement(13668..14840)
                     /gene="malY"
                     /locus_tag="JN125_002021"
     CDS             complement(13668..14840)
                     /gene="malY"
                     /locus_tag="JN125_002021"
                     /EC_number="4.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional maltose regulon transcriptional
                     repressor/cystathionine beta-lyase MalY"
                     /protein_id="HAY8871812.1"
                     /translation="MFDFSKVVDRHGTWCTQWDYVADRFGTADLLPFTISDMDFATAP
                     CIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSE
                     LIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK
                     PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWS
                     NVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTA
                     HIAAYQQGAPWLDALRIYLKDNLTYIADKMNAAFPELNWQIPQSTYLAWLDLRPLNID
                     DNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR"
     gene            complement(14850..16441)
                     /locus_tag="JN125_002022"
                     /pseudo
     CDS             complement(14850..16441)
                     /locus_tag="JN125_002022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416138.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS maltose transporter subunit IICB"
     gene            16616..17644
                     /locus_tag="JN125_002023"
     CDS             16616..17644
                     /locus_tag="JN125_002023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mal regulon transcriptional regulator MalI"
                     /protein_id="HAY8871813.1"
                     /translation="MATAKKITIHDVALAAGVSVSTVSLVLSGKGRISTATGERVNAA
                     IEELGFVRNRQASALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLHG
                     GKDGEQLAQRFSLLLNQGVDGVVIAGAAGSSDDLRRMAEEKAIPVIFASRASYLDDVD
                     TVRPDNMQAAQLLTEHLIRNGHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSD
                     WVLECTSSQKQAAEAITALLRHNPTISAVVCYNETIAMGAWFGLLKAGRQSGESGVDR
                     YFEQQVSLAAFTDATPTTLDDIPVTWASTPARELGTTLADRMMQKITHEETHSRNLII
                     PARLIAAK"
BASE COUNT         4526 a         4503 c         4546 g         4140 t
ORIGIN      
        1 acatgatgaa aaatattctc gctatccagt ctcacgttgt ttatggtcat gcgggtaaca
       61 gtgcggcaga gtttcctatg cgccgcctgg gcgcgaacgt ctggccgctg agcaccgttc
      121 aattttctaa tcacacccag tacggcaaat ggactggctg cgtgatgccg cccagccatt
      181 taaccgaaat tgtgcaaggc attgccgcca ttgataaatt acacacctgt gatgccgtgt
      241 taagtggcta tctgggatcg gcggagcagg gtgaacatat cctcggtatc gtccgtcagg
      301 tgaaagccgc gaatccgcag gcgaaatatt tttgcgatcc ggtaatgggt catccggaaa
      361 aaggctgtat cgttgcaccg ggtgtcgcag agtttcatgt gcggcacggt ttgcctgcca
      421 gcgatatcat tgcgccgaat ctggttgagc tggaaatact ctgtgagcat gcggtaaata
      481 acgtcgaaga agcggttctg gcagcgcgcg aactcattgc gcaagggcca caaattgtgt
      541 tggttaaaca cctggcgcga gctggctaca gccgtgaccg ttttgaaatg ctgctggtca
      601 ccgccgatga agcctggcat atcagccgtc cgctggtgga ttttggtatg cgccagccgg
      661 taggtgttgg tgatgtgacg agcggtttac tgctggtgaa actgcttcag ggggcaacgc
      721 tgcaggaggc gctggaacat gtgaccgctg cagtctacga aatcatggtg accaccaaag
      781 caatgcagga atatgagctg caagtggtgg ctgctcagga tcgtattgcc aaaccagaac
      841 attacttcag cgcaacaaag ctctgaaata tctcatttcg gcccacaacg acctgtgggc
      901 cgatggctat tactttaagc cttccgctga cagcgcgtct tgtacttccg gacgttcagc
      961 catacgttgc ataaatgctg caatgtgctc taacccttcc agattcagtt tcaccgcgta
     1021 tgcccagcgc agaaccgtaa acagataggc atcagcaatt gtaaatcttt gcccgcagat
     1081 ccagtgctca tccttcagtg cctcgttcac atattgcagc ttcttctcca gctgcgcgcg
     1141 aactgtcggt ttgtactctt ccggtgtatc agggcgaaac agaggtgtga aacctttatg
     1201 cagctcggtg gcgatgtaat tcagccattc gatggtttta tagcgggaaa tactgtttac
     1261 cggtgccagc aactggcggt cggggacgct gtcggcaaga tactgcataa tcgctacgcc
     1321 ttccgtcagc aaagtaccgt catccagcag caatgcaggc acctgcccct tagggttaac
     1381 ggcaaagtaa tcgtcaccgt tttcgagacg ttttttcatt aaatccacac tgacgagggt
     1441 aaaatccttt ccgctctcac gcagggtgat atgggaagcg agagagcagg cacccggttt
     1501 gtagaacaat ttcatcggta actccttttg tctgtggttt aaagtatggt agtgcgttgc
     1561 tgaacaaaaa aaaagccgct aacgaaaagt tagcggcttg taaaagagtt tccctgaatt
     1621 ttacgctaca gcagctttcg ccgctttgtc tgcagcgtca tcctgcgtca tacggtgcag
     1681 tttaggcgcg gtcagcagca tcagtactgc aataatggca gtagcgacac caatctgcaa
     1741 gaatacgcga ccataaactt ccagtgacat cagcgggtcg gtaacgttat ccggcacagc
     1801 catcataccc gcaacataac caccaatcag gtttgcaccg gcagtggtca ggaaccagct
     1861 acccataatg aagcccatca gacgctgcgg aacgagttgt gcaaccattg ccagacccag
     1921 accagagatc atcagttccc cgatgctctg caggccatag cttgcgacca gccagcttac
     1981 agacacgata ccagcgtcag acgcgaattt cgcacccagc ggcagaatca ggaacgcacc
     2041 agaacacatc accatgccga ttgcaaactt ggttggcatc ggcagggtat cgcccatctt
     2101 gttatagata gcggccagaa tcggactacc gatgatgatc cagaacgggt tcagtgcctg
     2161 atactgctca ggttctacgg ccagacccag aatggagtgc tcaacgttac gaatcgcaaa
     2221 gaagttcagt gacgttggca tctggctgta cagcacgaag aagataatgg cttcgagcat
     2281 caggatgaag gcaacgatca ttttacgacg cgcagcacct ttcatcgcga aggcttcttt
     2341 accgaagata accacgatac cgaaggcaac aacgcccagc gccatacgcg caacttcctg
     2401 attgtgcagc agccaggtgg cgatagcgat cagtgccaca acaccaataa tggtcagcag
     2461 caggttacgg tagttgatag gctcgaagtc tggttttgaa ccgtactgtt taacccagcg
     2521 ttggcagaag gcgaagttaa cgatagtgat cagcaggcct acaacgctca acgcaaacgc
     2581 aacactccag ccgtatttcg cggccagcca cggcgtagca atcatagaga agaaagagcc
     2641 gatgttgacg gacatgtagt acatggtgaa tgcaccgtcc agacgcgggt cgtttttctc
     2701 atagcatgta gaaagcagag aagacgggtt agctttaaac aggccgttac cgaccgcaat
     2761 agccgccata cccatataaa cgataccggc gtcgtgacca gaccaggcaa ccagagcata
     2821 accaatcgcc agcacaatag cgccgagcat aattacgcgt ttagtaccca gtactttgtc
     2881 acctaaccag ccgccgatag cgaccagacc ataaaccagg gcactaaagg aagagaaaag
     2941 ggtgattgaa tccgcttcag acatacccag ttgtttaacc aggtaaacag ccataattcc
     3001 ttgtaggccg taataaccaa aacgttccca taactcaatc gagaagatga gatagaacgc
     3061 cttcggttgt ttgaaagcgt tcaaactgac gctttcagtt ggtttttggt ttgcagtgga
     3121 cactttgacc tcttttttta catcccatat taacgggggt gctttctcgc gttatgtcta
     3181 aaaaacatac gcgcaattgt tatagtggga ggggaaacgg caggtaatgt tcactatctt
     3241 gcactttcag acaagtcctt tgtaataatc tgttacatat aactgaggcg gggaattcaa
     3301 ccattccggg aaatgttatc cagcgttaaa tttttcaaaa aacgtaacgg cagatttttt
     3361 cactgcactg agagggggat gatggcttaa cggcgatatg ttctgctatt tagcgttttt
     3421 gctagtgaga tagtccagtt tctgaaaaat agccagtgta atgttttgta ggtcaatatt
     3481 tgttgcgtgt gtaaatttaa atgattttaa cctgattatt gcaatgtttt tacattgcga
     3541 cagcatcgtg atcttgatca cgaatgaata gaaaatttcg ctattaaaaa aacaattaac
     3601 ctgcattttt ggttatccgc aaacggatta cctgatgata acgctaagca atggcatcat
     3661 tcacgttaaa aagatgtttt aaaagaggat aaagaaaggt tatcaatggg gtaatcggtg
     3721 ttaccccttt tcttcagatg tcaactttct ctttgtattc acaaagatct tcaataatac
     3781 aagagccaca gcggggcttg cgggcaatgc aggtataacg cccgtgcagg atcaaccaat
     3841 ggtggcagtc gactttaaac tctgccggaa ccactttcag tagcttttct tctacctgtt
     3901 caacgttttt ccccggcgca aattgagtac gattacaaac gcggaaaatg tgcgtgtcga
     3961 cagcaatagt cggccagccg aatgcagtgt ttaatacgac gttggctgtt ttacgaccta
     4021 cgccgggcag ggcttcaagc gcagcacgat cttccggaac ctcgccatta tgctgctcca
     4081 gtaagatacg gcaggttttg atgatatttt ctgctttgct gttataaagc ccaatcgttt
     4141 tgatataggt tttaacccct tcaacgccca gttcaagcat cgctgcaggc gtattcgcca
     4201 ccgggtagag tttcgccgtc gccttattaa cactgacatc ggtcgcctga gcggaaagca
     4261 gtacggcaat cagcaattca aaaggcgaac tgaaattaag ctcggtggtg ggatgaggat
     4321 tgttctcacg caggcgagtg aggatctcca ggcgttttgc tttgttcatc agacattccc
     4381 tgtttcaccg tttggcaatg cacgttcggc agctgcttca gtacggcgct ttttcattct
     4441 ttcatcaatc aggtattttc ctgccagcat cagtcccagg ccaataaatg cacctggtgg
     4501 cagcatcgcc agcaggaaag gggagtcggt gtggaaaatc tccacgcgta atacttttgc
     4561 ccagctacct aacagcgcat ctgcaccgtc aaacaatgtg ccattgccga taatttcgcg
     4621 tagtgaaccc agcacgaaca tggcgcaggt tgcgcccata ccaattgaaa agccgtccag
     4681 tgccgaaagc gccggacctt ttttggcggc gaaggcttca gcgcggccca caacgataca
     4741 gttagtgaca atcagcggaa taaaaatccc taatgattga tacaggccaa aggcgtaggc
     4801 gttgatcagc atctgtacag cgctgaccac cgaggcgatg atcatcacgt aaatgggaat
     4861 gcggatctcg gctggcgtcc agtgacgcag cgtcgaaatg gtcaggttgg tcagcgtcag
     4921 taccagcgta gtcgcaagtc ctaaacccag agcattagtg gcagtggacg tgaccgccaa
     4981 cagaggacaa aggccgagca actggaccag cgcagagttg tttttccaca acccctgaac
     5041 aataacgtct ttaatttcgc tcacgcttta ttctccacag gcaggaagtt gagaaagttg
     5101 tgccggtaac gtctgagcgt acaatccggc gcgttttacc gcattaacca ccgcgcgggg
     5161 agtaatcgtc gcgccggtga actggtcgaa atcaccacca tctttcttca ccgcccagtg
     5221 cgcatcatcc gcaccactga tttttttacc cgcaaaatgg gtgatccagt cagaaaggcg
     5281 cagttcgatt ttatcgccaa gccctggcgt ttcgtggtgc tctgtcacgc gcgtgccaag
     5341 taccgtgccg ttaaaatcgg ctcccaccag cagctgaatc gcaccggaat agccatctgg
     5401 cgcggttgct tccagaacgg cggctaccgg tttgtcatcc tgtttggcga tgtaaacccg
     5461 atgctcacct ttacctaact ctggcgcagt taccagatag caactctgtg ccagcgcatt
     5521 gttatagcgt tcggctggca gcacctgatc aaataatgcc ttttgttgca gacttgcctg
     5581 ttcagcaatc gtcgttttgg tcatctggtt gatggccgca gttaaccctg ttgaacccgc
     5641 tgcaaatagc gctaacgtaa tgccgtgttt tcggatagtt ttcagcatgg tttacccttt
     5701 gcgatggccg tagacgcgcg gacgcgtgta gtaatcgatc agaggaaccg tgatgttcgc
     5761 cagcaggacg gcaaaagcca cgccgtcagg atagccgccg aaactgcgga tcaaccagac
     5821 taataagccc gcaagcgcgc cgaaaataag acgaccacga ttggtcgtag aagcggtaac
     5881 cgggtcagtc aaaataaaga atgcgccgag catggtcgca ccagacagca gatgaatttg
     5941 cggtgctgcc agtgtttctg gtgagaacaa ccagcccaac gttgcgcata acgccagcgt
     6001 tactaagaag ctgaggggaa tatgccagcg aatcgctttc tgccatagca accacaggcc
     6061 gccagccagc caggcgagat ttacccattg ccaaccagcg cccgccagaa taccgctgta
     6121 gatcggatat tgcataatct gttcaaccga atgaccggca cggacagagg ttttaaatgt
     6181 atccagcggt gtcgcctgac taatgccatc aatacctaag tgtagtgtgt tcatatcagc
     6241 accactggcg gtatgcccgc tgaaaataac ctgtatggcg tcgataaaac cagggatgtt
     6301 gaccgcaatt tcatgtggcg gtaaccagct ggtcatctgc accgggaagg agatcagtaa
     6361 gaccacataa ccaatcattg ccggattaaa cgggttttgc cccagaccgc catacaactg
     6421 tttagcgatg atcaccgcaa acaccgtacc cagcacgacc atccaccatg gcgcgagggg
     6481 gggaatactt accgccagca ataagcctgt cagcaatgct gagttatctt tcaacgttgc
     6541 ggctaccgac tgcttgcgta gtttgagtac gagagcttcg gctaacagag tactaaccga
     6601 tgccaacagg atctgaacga gagtacccca accaaaaaac cacagttgcg ctgcgattcc
     6661 tggcacggct gcgagcaaca ccaacagcat aatgcgcgat gtctggcgct ggttatgggt
     6721 ataaggggag ctagctattc tgaataccat ttagtcctcg tttacaacct tttgctgggc
     6781 ggcttttttg gcctgagcgc gggcaatagc cgcggcaact gccgctttgc gcggatcaac
     6841 ctgttcttct ggttctgcgt tagtctgttg ctgttccagc ttgcgcgctt tggcacgggc
     6901 aatagcggct tcgacggcgg ctttgcgcgg atcaacctgt tcttcaggta ccgcattagc
     6961 ctgttgctgt tccagcttgc gtgctttggc gcgtgcaata gccgcttcga cggccgcttt
     7021 gcgcggatca acctgttctt ctggctccgc attagcctgt tgctgttcca gtttgcgcgc
     7081 tttggctcgg gcaatagcgg cttcgatggc ggctttgcgc ggatcgacct gttcttctgg
     7141 ttccgcatta gcctgttgct gttccagctt gcgcgctttg gcgcgggcga tagctgcttc
     7201 aacggcagtt ttacgtggat cagcaacggt tgctgcgtcg ttagtttgct gcagttctgc
     7261 ctgtttcgct ctggcttgcg ctttacgggc ttcccgtgct gcaataattg cactgttatc
     7321 cgggcgttcg cccgctttaa tcacaatagg ctgtgtagcc tgggcctgtt tctctttcac
     7381 ccgcgccaga gcggcagcaa tcgcatcttt atctttggct gcaggttgaa cggctgcgct
     7441 cttatgtcgt tcaaggcgag ccgctttttc gcgctccaga cgagcctggc gcgcttcgaa
     7501 acgcgctttg gcttctgcgg cgcgcttttc ttcctgacga atagccgcaa tttcagcttt
     7561 ttcctgacgg aaatattgca ccaggggaat attgctcggg caaacccacg cgcaagcccc
     7621 acattcaatg caatcagcaa tgttatgcgt ggtagcttta tcgtgttgct gacctttgct
     7681 gaaccagtac aactgttgcg gcaaaagatc cgcagggcag gcgtcagcac aggcgctaca
     7741 ccggatgcag ctttgttctt cctgtggttc gccaagttca ttggcagagg gagccaacag
     7801 acagttggta atctttacga ccgggacatc cagccatggc aaggtaaagc ccattagcgg
     7861 gccacccata atcaccattt gatcggcaga ggggcagaat cgggcatcat tcaataaatg
     7921 acgcactggc gtccccagcc gtgcccagac gttgcccggg cgagcgattg cttcgccagt
     7981 cagggttaca acacgctcgg taatcggctc gccatcaata acggcacgtt tcactgcata
     8041 agcagtgccg acgttttgca ttaatacgcc gatatcggat gaacgcccgc catgtggaac
     8101 ctgcttcccg gtcagaatgt aggttaattg tttagcaccg ccagaaggat atttggttgg
     8161 aatcacccgc agagaaatat cgttagagtc cgccagcacc gcgcgcagca tggaaatcgc
     8221 ctgcggtttg ttatcttcaa tgccgataag aatttcgcgt ggctgcagaa tatgcgcaag
     8281 aatgcgaata ccctctacga gctgagccgc gcaatcctgc atcaaacggt catcggcggt
     8341 aatgtacggc tcgcactcag ccgcgttgat aatcaacgtt tcaatcttat ctccgccacc
     8401 ctgcaattta acgcctgtcg ggaatcctgc accgcccagc ccggcaacac caaactgatg
     8461 tatgcgctcg attaactctt cgcgactgcg agtgcgataa tcggcccagc cgtcgcgcgg
     8521 gatccagcag tcttcaccat cggcatcaat aatcacgctt aattcagcta aagctgaagg
     8581 atgagccgta gagtggggcg caatagccgt aacggtaccc gaggtgggcg cgtgaacagg
     8641 cagcattttg ccgcgaccac gggtaagcgg ctggccgcgc aatactttat cgccgacgct
     8701 aacgcacaac tcaccttcag cgccaatatg ctgtttcagt ggaataacaa aacgctgcgc
     8761 cagtggtacc tggcgcaggg gtgtaccgtt ggactgggtt ttcatctccg gtggatggat
     8821 gccgccgttg aaatcccaga ttttattttt tctgaatgca gagaataact taagcatggt
     8881 gttccacggg aatgatacgc acgggaatgg tgttcagatc ccatttccag gagtcaggtg
     8941 tttctgcgac cggttgcaac gagatgcagt gcgtcgggca cggatcaaca cataaattgc
     9001 agcccgtaca gagatcactc attaccgtat gcatggcacg ggtagcgcca acgatggcgt
     9061 ctaccggaca agcctgaata catttagtgc agccaataca gttattttca tcaataaccg
     9121 ccaccatccg cgcaggcgtt agctcttgcg cttcgccatc cagcggctgc ggctcgacat
     9181 taagcaactc ggcaattttt agcatcacag cttcgccacc tggggcgcaa cggttgattt
     9241 tttcaccgtt acagctgatg gcttccgcgt aggggcgaca gccgggataa ccgcactgag
     9301 cacactggct ctgcggtaag attttgtcaa ttttctcaac gaccggatcg tcttccaccg
     9361 caaaacggcg ggaggcataa cccagaatgg cgccaaacgc caggcccagc aggctcacgg
     9421 cggcaacggc aatccagata gcattcatta caacttcacc aaaccactaa agcccataaa
     9481 ggccagagac ataagacctg cggtaattaa cgcaatggca ttaccgcgaa aaggtgccgg
     9541 gacatcagcc acagcaaggc gttcgcggat ggcggcgaag agcaccatca ccagcgagaa
     9601 accgacagcg gcggaaaaac cgtacagcgc cgactgcaag aaattgtgcc cgagattgat
     9661 attcagcaac gccacgccga gcactgcaca gttggtggtg ataagcggca aaaaaatccc
     9721 cagcagacgg taaagcaccg ggctggtttt gcgcaccacc atctcggtga actgcacgac
     9781 cacagcaatc accagaataa atgccagggt gcgcaggtaa atcagattaa gtgggatcaa
     9841 aatccacgta tcgataagcc aggcgcaaat agacgccagc gtcatcacaa acgttgttgc
     9901 cagccccatg cccatcgcgg tttccagttt tttggaaacc cccataaacg gacagagacc
     9961 gagaaacttg accagtacaa agttattgac cagtacagtt ccgacaaaca gtaacaggta
    10021 gtcagtcatt tttcggcctg aaataaaaaa gccgcctatt atccgttaat ccagagcagg
    10081 cgacaacagg ttaactgtaa ggttattacg gattcacaaa tgtcgctttt acccgcgacg
    10141 agcgtttgaa ataggagacg atcaatgcgg ttgccaacaa agtaaacagc aactggcgaa
    10201 cggctatgcc atcttccacg ggtgaaaaag cgaatgcttt tactgccagc aatacggaaa
    10261 taagcagcca gataatatag tgtttaggaa cacaacgccg acgtttaaag aaagcgatgg
    10321 tcaaccacag tgtgtaatac cacatggcga tagcggtaat aaaagaaacg ccccataaga
    10381 tttgtgtcgt cagtgcttgt ccgccgagcg tttgaaatgt ttgcggagaa gataacgcag
    10441 cggtatacag caacaacgcc agcgtcgtac tcaacagagc gactaaaagc caggccaacg
    10501 ggccaagcaa ccagcctcca atacgttgtg gcgttgtggt ggtcataggt tctccagaat
    10561 agcgacgcaa acaggcaaat ctaattttag gggcgttatt ataaggcttt tataaccgat
    10621 cgctactttc tttattggac atagtgccag acggacttcg gtacctggcc gaggtcaaac
    10681 aaacgcccgc cagaaaccag ctctgcgcga cggtgatcgg cagcacgata catattgatc
    10741 agttcctgat cgtccgtcag ggtgtaatta agatggtcgt agagtttttc cagactttcg
    10801 agtgaactga ttttgcgaaa ttttaataag tagtcctgaa cagtcataaa aggtccataa
    10861 aataattaat accaaagggg taggtattat tagtgatgat aaaatttcac caaaagtgaa
    10921 cgcttgtgtt attacaataa taagaatgcg ctgatggcaa atattcaggg atgaaaaact
    10981 gctctgaaaa gagtaacgcg ctttactatc cctgacaatc accaacaaca tcgaacaaga
    11041 taataaattc ctggtttaat atccgacaag tgaaaacatg cacccggacg ggcagcatgg
    11101 cgctctacaa gcgcagagct tacttgtgtt gtaccgaagc actctgttca ggtggctgat
    11161 agttgtcaat gtgactcgcc acgccaagaa gaatgactga aacgacaaga acgatccaac
    11221 ctgttaattc aataagacga ttcattacag cccacatctc tcttgattga tccattaact
    11281 tcagggggta aatgttactt agcaataata gctccagcaa gatttttact gaggtttttg
    11341 cgatatttag cttttgtcgt tggaaaattc gctatttttt tgacttaagt taaacaacat
    11401 cccttattgc tggcaggtta ttaaactgtt gagcgtgggt aaaggatagt gtcaaatagc
    11461 aatcatactt caatgagagg caatgacatg agcgacaaca tccgtgttgg gttgattggg
    11521 tatggttatg cgagcaaaac cttccatgcg cccctgattg cgggcacgcc cgggctggaa
    11581 ctggcggtaa tctccagcag tgatgaaaca aaagtaaaag ccgactggcc aacggttacg
    11641 gttgtctctg agccgaagca tctgtttaac gatcccaaca tagacctgat tgtcattcct
    11701 acacccaacg atacccattt cccgttagcc aaagcggcgc ttgaggcggg taaacatgtg
    11761 gtcgttgata aaccctttac cgtgacactg tcacaagcgc gagagctgga tgcgctggca
    11821 aaaagcctgg ggcgtgtgct gtctgtattc cataaccgtc gttgggatag cgatttcttg
    11881 aagctaaaag gtttgctcgc ggaaggcgtg ctgggtgaag ttgcttactt tgagtctcat
    11941 tttgaccgct tccgtccgca ggtgcgcgat cgttggcgtg aacagggcgg cccaggcagc
    12001 ggtatctggt acgatttagc accgcatctt cttgatcagg ccattacgct atttggttta
    12061 ccggtcagca tgacggtaga tttggcacag ttacggcccg gagcgcagtc gaccgattat
    12121 ttccacgcca tcttgtccta tccacagcgg cgagtcattt tacacggtac catgctggca
    12181 gccgctgagt cagcacggta tatcgtgcat ggatcccgag gcagttatgt gaaatatggc
    12241 ctcgatccac aggaagaacg tctgaaaaat ggcgagcgtc tgccgcagga agactggggc
    12301 tacgatatgc gtgatggcgt acttacccgc gtggaaggtg aggaacgtgt cgaagaaacg
    12361 ctgttgacgg tacctgggaa ttatccggct tactatgcgg ctattcgtga tgcgttaaat
    12421 ggcgatggtg aaaatccggt tccggcaagc caggcaatcc aggtaatgga gttgattgag
    12481 ctgggcatcg aatccgccaa acatcgcgcg actttgtgcc ttgcatgaaa aatggatggt
    12541 gcaatttgca ccatccattt tgttacttcg cggcgacttt ttctcgcagt gcgcgttttt
    12601 cctcagcgct gaggaaagcc atttccagac cattaatctg tgcctggcgg atttgctcgc
    12661 gggataaccc agcagctggc gcggcaacgg tatattcgtg aatgatatcc actccctgta
    12721 cgccgggatc gtcagtgtta atgccggcac gaatgccatg ctcaaggaac gttttcagcg
    12781 gatgtgcagc cagctctgct acggtgctgg tctgaatatt ggaggtcaga caggattcaa
    12841 taccaatttg ttgctcggcg agaaaatcca tcagcgcccg atcttcaatg gcttttacgc
    12901 catgtccaat acgctccgca cccagttcac gaatcgcctg ccagatgctt tccggcccgg
    12961 cagcttcgcc tgcatggacg gtaatatgcc agcccgcatc acgcgcaagg ttgaagtgag
    13021 aaaggaacag acttcccggg aaaccaagtt catcaccggc taaatcaagt gcggtaatct
    13081 ggtcacggtg ggctaaaaag gcctccagct cttgctgaca ggcggcttcg ccgaaggttc
    13141 ggctcataat gccgataagc ttcgcctgca caccaaaagt gcggcaacct tcacgtacgc
    13201 catcgatcac cgcttcgaca acacccgcta caggcagctt atgtgccatt gccatgtagc
    13261 ctggtgaaaa acgcagctcg acatagtgca ggccgttacg ggctgcatct tcaatgtttt
    13321 caaatgccac gcggcggcag gcatcaagag aggcgagaac tttaacgccc cagtcaagtt
    13381 tggtcagaaa gctcaccaga tcgggttcgt tggcaatgac ctgaacgtgg ggaatcagtg
    13441 tttccaggga ttgtgcagga agcgagatat tatactggcg gccaagttca agaatggtct
    13501 ggggacgaat gttgccatca aggtggcgat ggatatcagt taatggcagg gtggtatcaa
    13561 tcatggtcgc actctttttc tggatataaa agtgcgcacc attataaaaa caaagcaggg
    13621 taaaaatcca cgattgcgca acgatttttt acgttgcgca attggggtta acgaacagcg
    13681 cggatggcgt taattaatcc agccacacct ttttccagtt tcgaacgtgg gcagccggca
    13741 ttgagacgga caaaaccacg accttcttca ccgtaggtat accccggcat gatcgcgact
    13801 ttttcttgtt cgataagtgc tttttgcaac gcgttgtcgt caatattcaa cggacgtaaa
    13861 tcaagccatg ccagataagt ggattgtggg atctgccagt tgagttcagg aaacgcggcg
    13921 ttcattttat ctgcgatata cgtcaggtta tctttcagat agatgcgtaa ggcatccagc
    13981 cacggcgcgc cttgctgata ggcggcgata tgggcagtta acgccagtac cgaaggggaa
    14041 gaaagcccat cacggccttt cagtgccgat aaataggcat cgcggctact gctattttct
    14101 ataatcccgt aagcaccggt cagggcggga atattgaaac ttttcgagcc cgacgttagc
    14161 aacgcccagt ctccgcgagc cacattactc cagggaatat gcggctgctc gccccaaacc
    14221 atatccatat ggatttcatc ggaaataacc cgcacaccat gacgctcgca caggtcagcc
    14281 atgatctcca gctcatcgca cgtccacact ttcccggtag gattctgtgg gctacacagg
    14341 agcataattt tacattctgg tttcgccaac acggcttcca acttgcccat atcgcaaaac
    14401 caaccatcag cctgcttctc taaagcaacg ggcattactg tgcgctggtt accttcaatg
    14461 gccttgtaaa atgcgtcata ggcgggtgtg tggatcacca cgccttcacc tgtttcagac
    14521 cactgacgaa tcagttctga aaccatatag atgacagaag ggccatacac caccgtctga
    14581 gaatcgatgg cggtgtaatg ctgggtggaa aaccagtggg caatagccgc gagaaactca
    14641 tcgtttttcc agcggctgta gccaaatacg ccgtgcatca ggcgctgatt cagcgcctct
    14701 ataatgcagg gggcagtggc aaaatccatg tctgaaatcg tgaacggtaa caggtcagca
    14761 gtgccgaaac ggtcagcgac ataatcccac tgtgtacacc atgtgccatg acgatccacg
    14821 acctttgaaa aatcgaacat atcttatcct tatgcctgga cagtatgcat cagaccggcc
    14881 atttcatctt ttactgactg aacttgtggc ccgataacaa cctgcaggtt atgttgatta
    14941 agttgtacta cgccaattgc ccgattgtcc ttcagtgcct gcacattaac aagcgacata
    15001 tctttcacag acaaacgcag acgggtaatg cagttatcga ggctgacaat attgtcggca
    15061 ccgcctaatg cttcgaggat tgcaggaacg ttgtaacctg atttacccgg cgcagcggca
    15121 acggcttttt cgattgagct ggcaacttcg ctatcgcgcc ccggggtttt gagattgaag
    15181 cgggtgatag cgaaacggaa gatggcgtag taaacgacaa accagattgc cgccaccact
    15241 ggcaccatgt accacttggt tgacagacca tgcaaaatac cggacaccac gaagtcgatg
    15301 atattgccgt cggtattacc gatggtgacg ccgagcacag acatgacggt gaagccgagg
    15361 ccggttaaca gcgcgtggat gacatacaga actggcgcta cgaacaggaa caggaattcc
    15421 agcggttcgg tagtgccgcc aacgacgcag gcgatcaggc cagaaatcag cagaccttta
    15481 attttatggc gattttccgg gcgcgcgcag tgatacatag ctaacgctgc agctggcaga
    15541 ccgccgagaa acgcaggcat tttaccttgc gaaaggaaac gcgtggcgct ttcagaaaaa
    15601 ccgtgagtgg tcgggcaact caattgcgct tggaagatgg tcagtgcgcc gctgacggtt
    15661 tgaccgcaga cttcctgcgt gccgcctgcg tcggtaaagc gaattaatgc caccagaatg
    15721 tgatgcagac caaacggcaa cagcagacgt tcaccggtac caaacagcat cggtccgaaa
    15781 tcacccgcgc tgtttatcat atggccaagc cgctaatacc catggcgaaa atcggccaga
    15841 ctaatggaat caccaggccg acaaggccca tcaccagcga ggagataatt ggtacgaagc
    15901 gcgtaccgcc gaagaatgcc agcgcatccg gcaggcggat attatggaaa cgctcatgca
    15961 gcatccagac gataataccg gcgatcaccg caccgaggat cccggtatcg atcgactgga
    16021 tcccaagaat gctctggatg ttattggctt tcagaaccgc ggcatccgtg gttggcagaa
    16081 tgcctttatt ggtcaaccag aagtttaccg cgaggttcat taccgcataa ccgacgaagc
    16141 cagcgaatgc cgctacgcct ttattttcgc gtgccaggcc cagcgggatg gcgatacaga
    16201 acatgacagg caggaaacta aaagcaaacg agccaatctt actcatccag gtaaagatag
    16261 cctgcaacac ggggttgccc aggaccggga tcagggttat gacatcatgg ctgctaagag
    16321 aactaccaat gccgagcata atgccgcaga acgacaataa tgccacgggt aacatgaagg
    16381 ttttgcctaa ctgctggaag aactcccaca gcgtgacttt cggtgctgtt ttcgccgtca
    16441 taaaacgact cctcgtagag aacaatctgg attcagtaaa ttgcgcgaga agataaaacg
    16501 ttttatcaaa ttttagtgag gcataaatca cattacgcaa cgataatagc gggtataaga
    16561 taaataaaag gtaaaacgtt ttatctgtca cataatcagg gagtaggtca tctgcatggc
    16621 taccgccaaa aaaataacca ttcatgatgt tgcgctggct gcgggcgtgt cggtaagtac
    16681 cgtttcgctg gtgcttagtg gcaaagggcg aatctctacc gccacaggag aacgcgttaa
    16741 cgccgccatt gaagagctgg gatttgtgcg caatcgccag gcgtcggcgc tgcgcggcgg
    16801 gcaaagcggc gtcattggtt tgatcgtccg tgatttatct gcgccgtttt acgccgaatt
    16861 gacggccgga ttgacggaag ctctggaagc gcagggacgg atggtttttt tgcttcacgg
    16921 cggtaaagac ggcgagcagc tggcacagcg gttttcactg ttactgaatc agggggtcga
    16981 tggtgtggta attgccgggg ctgcaggaag cagcgatgac ctgcgacgga tggcagaaga
    17041 aaaagctatc ccggtgattt tcgcttcccg tgccagttat cttgatgatg ttgatacggt
    17101 tcgcccggac aacatgcagg ctgcacagtt gttgacggag catctcattc gcaatgggca
    17161 tcagcggatc gcctggctgg gagggcaaag ttcctcatta acccgggcag aacgggtggg
    17221 aggctattgt gcaactctac taaaatttgg cctgccgttt cacagcgatt gggtgctgga
    17281 gtgcacatcc agccagaagc aagctgcgga agctatcacg gcgcttttac gtcataaccc
    17341 gaccatcagt gctgtggttt gctataacga aactattgcg atgggggcat ggtttggttt
    17401 gctgaaagca gggcggcaaa gcggggaaag cggagtcgat cgttactttg agcaacaagt
    17461 ttcgctggcg gcatttaccg atgcgacacc aaccacactt gatgatatac ccgttacctg
    17521 ggccagcacg cctgcgcggg aacttggtac cacacttgcg gatcgcatga tgcaaaaaat
    17581 cacccatgaa gagacgcatt cacgcaatct tattattccc gcccggctca ttgcagcgaa
    17641 ataatcctct ctttatctgc tatacctggt agtgtccttt cctcaaggtt aatgataaaa
    17701 aatgtggcac acagg
//
LOCUS       DADMHM010000067        17582 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.068, whole genome shotgun sequence.
ACCESSION   DADMHM010000067 DADMHM010000000
VERSION     DADMHM010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17582)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17582)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17582
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.068"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(481..1614)
                     /gene="thiH"
                     /locus_tag="JN125_002024"
     CDS             complement(481..1614)
                     /gene="thiH"
                     /locus_tag="JN125_002024"
                     /EC_number="4.1.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HAY8871814.1"
                     /translation="MKTFSDRWRQLDWDDIRLRINGKTAVDVERALNASQFTRDDMMA
                     LLSPAASGYLEQLAQRAQRLTRQRFGNAVSFYVPLYLSNLCANDCTYCGFSMSNRIKR
                     KTLDEADIARESAAIREMGFEHLLLVTGEHQAKVGMDYFRRHLPALREQFSSLQMEVQ
                     PLAKTEYAELKQLGLDGVMVYQETYHEATYARHHLKGKKQDFFWRLETPDRLGRAGID
                     KIGLGALIGLSDNWRVDCYMVAEHLLWLQQHYWQSRYSVSFPRLRPCTGGIEPASIMD
                     ERQLVQTICAFRLLAPEIELSLSTRESPWFRDRVIPLAINNVSAFSKTQPGGYADNHP
                     ELEQFSPHDDRRPEAVAAALTAQGLQPVWKDWDSYLGRASQRL"
     gene            complement(1611..2456)
                     /gene="thiG"
                     /locus_tag="JN125_002025"
     CDS             complement(1611..2456)
                     /gene="thiG"
                     /locus_tag="JN125_002025"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709785.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HAY8871815.1"
                     /translation="MSSGRNISCRMATRSCFFRLLQGVEMLRIADKTFDSHLFTGTGK
                     FASSQLMVEAIRASGSQLVTLAMKRVDLRQHNDAILEPLIAAGVTLLPNTSGAKTAEE
                     AIFAAHLAREALGTNWLKLEIHPDARWLLPDPIETLKAAEMLVQQGFVVLPYCGADPV
                     LCKRLEEVGCAAVMPLGAPIGSNQGLETRAMLEIIIQQATVPVVVDAGIGVPSHAAQA
                     LEMGADAVLVNTAIAVADDPVNMAKAFRLAVEAGLLARQSGPGSRSHFAHATSPLTGF
                     LEASA"
     gene            complement(2383..2583)
                     /gene="thiS"
                     /locus_tag="JN125_002026"
     CDS             complement(2383..2583)
                     /gene="thiS"
                     /locus_tag="JN125_002026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HAY8871816.1"
                     /translation="MQILFNDQPMQCAAGQTVHELLEQLDQRQAGAALAINQQIVPRE
                     QWTQHIVQDGDQILLFQVIAGG"
     gene            complement(2567..3322)
                     /gene="thiF"
                     /locus_tag="JN125_002027"
                     /pseudo
     CDS             complement(2567..3322)
                     /gene="thiF"
                     /locus_tag="JN125_002027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709786.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole biosynthesis adenylyltransferase ThiF"
     gene            complement(3315..3950)
                     /gene="thiE"
                     /locus_tag="JN125_002028"
     CDS             complement(3315..3950)
                     /gene="thiE"
                     /locus_tag="JN125_002028"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709787.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HAY8871817.1"
                     /translation="MYQPDFPPVPFRLGLYPVVDSVQWIERLLDAGVRTLQLRIKDRR
                     DEEVEADVVAAIALGRRYNARLFINDYWRLAIKHQAYGVHLGQEDLQATDLNAIRAAG
                     LRLGVSTHDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLEQLARHVERLADYP
                     TVAIGGISLARAPAVIATGVGSIAVVSAITQAADWRLATAQLLEIAGVGDE"
     gene            complement(3950..5845)
                     /gene="thiC"
                     /locus_tag="JN125_002029"
     CDS             complement(3950..5845)
                     /gene="thiC"
                     /locus_tag="JN125_002029"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HAY8871818.1"
                     /translation="MSATKLTRREQRARAQHFIDTLEGTAFPNSKRIYLTGTHSGVRV
                     PMREIQLSPTLIGGSKEQPQFEENEAIPVYDTSGPYGDPQIAINVQQGLAKLRQPWID
                     ARGDTEELTVRSSDYTKARLADDGLDELRFSGVLTPKRAKAGRRVTQLHYARQGIITP
                     EMEFIAIRENMGRERIRSEVLRHQHPGMSFGARLPENITAEFVRDEVAAGRAIIPANI
                     NHPESEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWSMRWGADTVMDLSTGRYI
                     HETREWILRNSPVPIGTVPIYQALEKVNGIAEDLTWEAFRDTLLEQAEQGVDYFTIHA
                     GVLLRYVPMTAKRLTGIVSRGGSIMAKWCLSHHQENFLYQHFREICEICAAYDVSLSL
                     GDGLRPGSIQDANDEAQFAELHTLGELTKIAWEYDVQVMIEGPGHVPMQMIRRNMTEE
                     LEHCHEAPFYTLGPLTTDIAPGYDHFTSGIGASMIGWFGCAMLCYVTPKEHLGLPNKE
                     DVKQGLITYKIAAHAADLAKGHPGAQIRDNAMSKARFEFRWEDQFNLALDPFTARAYH
                     DETLPQESGKVAHFCSMCGPKFCSMKISQEVRDYAATQTIEMGMADMSENFRARGGEI
                     YLRKEEA"
     regulatory      complement(5926..6026)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(6079..6555)
                     /gene="rsd"
                     /locus_tag="JN125_002030"
     CDS             complement(6079..6555)
                     /gene="rsd"
                     /locus_tag="JN125_002030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma D regulator"
                     /protein_id="HAY8871819.1"
                     /translation="MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKE
                     SYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQ
                     IMDYYDSSLETAIDHDNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA"
     gene            6650..7423
                     /gene="nudC"
                     /locus_tag="JN125_002031"
     CDS             6650..7423
                     /gene="nudC"
                     /locus_tag="JN125_002031"
                     /EC_number="3.6.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) diphosphatase"
                     /protein_id="HAY8871820.1"
                     /translation="MDRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANFDLVGQRAL
                     QIGEWQGEPVWLVQQQRRHDMGSVRQVIDLDVVLFQLAGRGVQLAEFYRSHKYCGYCG
                     HEMYPSKTEWAMLCSHCRERYYPQIAPCIIVAIRRDDSILLAQHTRHRNGVHTVLAGF
                     VEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGDIVIDPK
                     ELLEANWYRYDDLPLLPPPGTVARRLIEDTVAMCRAEYE"
     gene            7463..8527
                     /gene="hemE"
                     /locus_tag="JN125_002032"
     CDS             7463..8527
                     /gene="hemE"
                     /locus_tag="JN125_002032"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HAY8871821.1"
                     /translation="MTELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAG
                     DFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSP
                     VTCKADVDKLPIPDPEDELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGS
                     SKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRD
                     YQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIA
                     DARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVP
                     PEHAGVFVEAVHRLSEQYHR"
     gene            8537..9208
                     /gene="nfi"
                     /locus_tag="JN125_002033"
     CDS             8537..9208
                     /gene="nfi"
                     /locus_tag="JN125_002033"
                     /EC_number="3.1.21.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease V"
                     /protein_id="HAY8871822.1"
                     /translation="MDLASLRAQQIELASSVIREDRLDKDPPDLIAGADVGFEQGGEV
                     TRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQKPDLVFV
                     DGHGISHPRRLGVASHFGLMVDVPTIGVAKKRLCGKFEPLSSEPGALAPLMDKGEQLA
                     WVWRSKARCNPLFIATGHRVSVDSALAWVQRCMKGYRLPEPTRWADAVASERPAFVRY
                     TANQP"
     gene            9251..9841
                     /locus_tag="JN125_002034"
     CDS             9251..9841
                     /locus_tag="JN125_002034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjaG family protein"
                     /protein_id="HAY8871823.1"
                     /translation="MLQNPIHLRLERLESWQHVTFMACLCERMYPNYAMFCQQTGFGD
                     GQIYRRILDLIWETLTVKDAKVNFDSQLEKFEEAIPSADDFDLYGVYPAIDACVALSE
                     LVHSRLSGETLEHAVKVSKTSITTVAMLEMTQVGREMSDEELKENPAVEQEWDIQWEI
                     FRLLAECEERDIELIKGLRADLREAGESNIGIIFQQ"
     gene            10028..10300
                     /gene="hupA"
                     /locus_tag="JN125_002035"
     CDS             10028..10300
                     /gene="hupA"
                     /locus_tag="JN125_002035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017460010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein HU-alpha"
                     /protein_id="HAY8871824.1"
                     /translation="MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQL
                     VGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK"
     gene            10313..11008
                     /locus_tag="JN125_002036"
     CDS             10313..11008
                     /locus_tag="JN125_002036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1481 domain-containing protein"
                     /protein_id="HAY8871825.1"
                     /translation="MNSFNEGVVSPLLSFWRRSLMLAGALLLTACSHNSSLPPFTASG
                     FAEDQGAVRIWRKDSGDNVHLLAVFSPWRSGDTTTREYRWQGDNLTLININVYSKPPV
                     NIRARFDDRGDLSFMQRESDGEKQQLSNDQIDLYRYRADQIRQISDALRQGRVVLRQG
                     RWHAMEQTVTTCEGQTIKPDLDSQAIAHIERRQSRSSVDVSVAWLEAPEGSQLLLVAN
                     SDFCRWQPNEKTF"
     gene            complement(11010..11435)
                     /gene="zraP"
                     /locus_tag="JN125_002037"
     CDS             complement(11010..11435)
                     /gene="zraP"
                     /locus_tag="JN125_002037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312952.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc resistance sensor/chaperone ZraP"
                     /protein_id="HAY8871826.1"
                     /translation="MKRNTKIALVMMALSAMAMGSTSAFAHGGHGMWQQNAAPLTSEQ
                     QTAWQKIHNDFYAQSSALQQQLVTKRYEYNALLAANPPDSSKINAVAKEMENLRQSLD
                     ELRVKRDIAMAEAGIPRGAGMGMGYGGCGGGGHMGIGHW"
     gene            11673..13049
                     /gene="zraS"
                     /locus_tag="JN125_002038"
     CDS             11673..13049
                     /gene="zraS"
                     /locus_tag="JN125_002038"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     ZraS"
                     /protein_id="HAY8871827.1"
                     /translation="MRFMQRSKDSLAKWLSAILPVVIVGLVGLFAVTVIRDYGRETAA
                     ARQTLLEKGSVLIRALESGSRVGMGMRMHHAQQQALLEEMAGQPGVRWFAVTDEQGTI
                     VMHSNSGMVGKQIYSPQEMQQLHPGDEEAWRRIDSADGEPVLEIYRQFQPMFGAGMHR
                     MRHMQQYAATPQAIFIAFDASNIVSAEDREQRNTLIILFALATVLLASVLSFFWYRRY
                     LRSRQLLQDEMKRKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQL
                     AQVMAKEADRLNRVVSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRF
                     TANDTLPEIQADPDRLTQVLLNLYLNAIQAIVQHGVISVTVSESGAGVKISVTDSGKG
                     IAADQLEAIFTPYFTTKAEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLPVN
                     ITRKDPQG"
     gene            13046..14371
                     /gene="zraR"
                     /locus_tag="JN125_002039"
     CDS             13046..14371
                     /gene="zraR"
                     /locus_tag="JN125_002039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent response regulator
                     transcription factor ZraR"
                     /protein_id="HAY8871828.1"
                     /translation="MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQ
                     VREQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALD
                     YLIKPLDFDNLQATLEKALAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAP
                     SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAF
                     TGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVR
                     LIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERN
                     RKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIP
                     LGQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR"
     gene            complement(14368..15657)
                     /gene="purD"
                     /locus_tag="JN125_002040"
     CDS             complement(14368..15657)
                     /gene="purD"
                     /locus_tag="JN125_002040"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HAY8871829.1"
                     /translation="MKVLVIGNGGREHALAWKAAQSPLVETVFVAPGNAGTALEPALQ
                     NVAIGVTDIPALLDFAQNEKIDLTIVGPEAPLVKGVVDTFRAAGLKIFGPTAGAAQLE
                     GSKAFTKDFLARHKIPTAEYQNFTEVEPALAYLREKGAPIVIKADGLAAGKGVIVAMT
                     LEEAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRV
                     GDKDTGPNTGGMGAYSPAPVVTDDVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMI
                     DKQGNPKVIEFNCRFGDPETQPIMLRMKSDLVELCLAACESKLDEKTSEWDERASLGV
                     VMAAGGYPGDYRTGDVIHGLPLEEVAGGKVFHAGTKLADDEQVVTNGGRVLCVTALGH
                     TVAEAQKRAYALMTDIHWDDCFCRKDIGWRAIEREQN"
     gene            complement(15669..17258)
                     /gene="purH"
                     /locus_tag="JN125_002041"
     CDS             complement(15669..17258)
                     /gene="purH"
                     /locus_tag="JN125_002041"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HAY8871830.1"
                     /translation="MQQRRPVRRALLSVSDKAGIVEFAQALSARGVELLSTGGTARLL
                     AEKGLPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGQDDAIMEEHQIQPIDMVV
                     VNLYPFAQTVAREGCSLEDAVENIDIGGPTMVRSAAKNHKDVAIVVKSSDYDAIIKEM
                     DDNEGSLTLATRFDLAIKAFEHTAAYDSMIANYFGSMVPAYHGESKEAAGRFPRTLNL
                     NFIKKQDMRYGENSHQQAAFYIEENVKEASVATATQVQGKALSYNNIADTDAALECVK
                     EFAEPACVIVKHANPCGVAIGNSILDAYDRAYKTDPTSAFGGIIAFNRELDAETAQAI
                     ISRQFVEVIIAPSASEEALKITAAKQNVRVLTCGQWGERVPGLDFKRVNGGLLVQDRD
                     LGMVGAEELRVVTQRQPTEQELRDALFCWKVAKFVKSNAIVYAKNNMTIGIGAGQMSR
                     VYSAKIAGIKAADEGLEVKGSSMASDAFFPFRDGIDAAAAAGVTCVIQPGGSIRDDEV
                     IAAADEHGIAMLFTDMRHFRH"
BASE COUNT         3962 a         4713 c         4832 g         4075 t
ORIGIN      
        1 aatcagtgaa atttttcacc attgcctaca acttattgag aaataagcag cttcctcagc
       61 cctcaaaata acaaaaccca ccttaaggtg ggtttcgcca gagaattatc tctggtattc
      121 agaacgccat taccggactt tgccttgacc ttgcgataat cgcaggttgc gggatgtctg
      181 aatttcttca gtctgctgca tcctggaaga tgagaacatg tgttcttatt ttcgtctcta
      241 tcatagttga gtatttactc tcttacaatc agatctcttt cattgctcaa caggcgatgg
      301 cttcagactt tgcattacgg aatttttaag aaaggcaggg cgaaacgagg aagaagcttt
      361 tcgccctgga caacattcct gctgacggca ctaccataaa aaaacacaac gctttcaaca
      421 accttgcgtt tttcatcttc cgtagcggct cggaataaat ttacgttctt acattccgtc
      481 tcatagtctt tgcgaggccc gtcccagata gctgtcccag tctttccata ccggctgcaa
      541 accctgagcg gttaacgcgg cagcaaccgc ttccggtctg cgatcgtcgt gcggtgagaa
      601 ctgttccaac tcggggtgat tatcggcata gccacctggc tgcgttttcg agaaggcgct
      661 gacgttattg atcgccagcg gaataacgcg atcgcgaaac cacggtgatt cccgcgtgga
      721 gagtgacagt tcaatctccg gtgcaagcag tcggaaggcg cagatggttt gcactaactg
      781 gcgttcatcc ataatcgacg caggctcaat gccgccagta cacgggcgca ggcgcggaaa
      841 agagacagag taacggcttt gccagtaatg ctgttgcagc catagcaaat gttcggcaac
      901 catatagcag tcaacgcgcc agttgtcgga aaggccaatt agcgcgccga ggcctatctt
      961 atcaatcccc gcacgcccca gccgatccgg cgtttccagc cgccagaaga agtcctgttt
     1021 tttgcctttc agatgatggc gggcataagt cgcctcgtga tatgtctcct gataaaccat
     1081 cacgccatcc agaccaagct gctttaactc ggcgtattcc gtcttcgcca gcggttgcac
     1141 ttccatttgt agtgaagaga actgttcacg cagggcgggg agatgacgac gaaagtaatc
     1201 catccccact ttcgcctgat gttcaccagt gactaatagc agatgttcaa agcccatctc
     1261 ccgtatagcg gcgctttccc tggcaatatc cgcttcatcc agcgttttgc gcttgatgcg
     1321 attactcatg gaaaatccgc agtacgtgca gtcgttagcg caaagattgg aaagataaag
     1381 cgggacgtag aaactaactg cgttgccaaa tcgctgacgg gtcagacgct gcgcccgttg
     1441 ggccagttgt tccagatagc cactggcggc tggcgataac agcgccatca tatcgtcgcg
     1501 ggtgaattgc gaggcattta gcgcccgctc tacgtcaaca gccgttttgc cgttgatacg
     1561 caggcggatg tcatcccagt ccagttgtcg ccagcgatcg ctgaaggttt tcatgccgat
     1621 gcctccagaa atccagtcag cgggctggtg gcatgagcaa aatgactgcg gctgcccggt
     1681 ccggactgac gtgccagcag gcctgcttct accgccagac gaaatgcctt cgccatgttg
     1741 acgggatcgt ccgctacggc aatcgccgta ttcactaaca ccgcgtcggc ccccatttcc
     1801 agggcctgcg cggcatggct gggaacgccg atgccagcat cgacaaccac cggaactgtg
     1861 gcctgctgga taataatctc cagcatggca cgggtttcca gtccctgatt cgagccaatc
     1921 ggcgcgccga gcggcatcac cgctgcacag ccgacttctt ccagacgttt acacaatacc
     1981 ggatcggccc cgcagtaagg cagcacgaca aatccctgtt gtaccagcat ttcggcggct
     2041 ttcagagttt cgatgggatc gggcaacagc cagcgggcgt cagggtgaat ctctaatttt
     2101 aaccagtttg tgcctaacgc ttcacgtgcc agatgggcgg cgaaaatggc ttcttccgct
     2161 gttttcgccc cggaagtatt tggcagcagg gtcacacccg ccgcgataag cggttcgagg
     2221 atagcgtcgt tgtgctggcg caagtcgaca cgtttcatcg ccagtgtcac cagctggctg
     2281 ccggaagcgc ggatcgcctc caccatcagt tgtgaagaag cgaatttccc tgtgccggta
     2341 aacagatgtg aatcaaacgt tttgtccgca atacgtaaca tctcaacccc ctgcaataac
     2401 ctgaaaaagc aggatctggt cgccatcctg cacgatatgt tgcgtccact gctcacgcgg
     2461 gacgatttgc tgattaatcg ccagagccgc gcccgcttgt cgttggtcga gttgctccag
     2521 tagttcgtga acagtttgcc cggcggcgca ctgcatcggt tgatcgttaa acaggatctg
     2581 cattgcttcc tccgcatacc gggcaaccac tggcgcggcg caacgccagg ctgcgccact
     2641 ggctcgattt accgtcgaac agtcggagtt ctcccgcagg tgtctctata ccgcttaata
     2701 acttaatggc ttccagtgcc tgcaaagtgc ccataacccc gaccaccggg ccaaccacgc
     2761 ccgccgtgcg gcagttgcgt tctggctcct ggttatctgg ccacaggcag cggtaacacc
     2821 cctgctccca gggcggcgtc agtaccatca actgaccgcc aaatccgacc gcgctggcgg
     2881 tgataagcgg cgtgttgagt accacgcagg cggcattaat ctcctggcga gtcgccatat
     2941 tgtcggtaca gtcgagcacc acatcggccc gtgcaaccgc atcttttaac gcctcacccg
     3001 ttaaccgttg ttgtaatgct gtcagttgaa tgtcgggatt caactgtgtc agtcgctgtt
     3061 ggctgacctg cgatttcggg ctgttgatat cttcagtggt aaagagaatt tgtcgttaca
     3121 gattgcttaa atgcacatcg tcgtcatctg ccagtaccag cgtcccgacg ccagcgcccg
     3181 ccaggtatag cgcagcaggt gtacccagcc cgccaagacc gataatcagc acctggctgt
     3241 cgagcagttt ttgctgcccg tcaagagcga tatcgtcgag caggatttgg cggctataac
     3301 gcataaaatc acggtcattc atcgccaact cctgcaattt ccagcaactg tgccgttgcc
     3361 aaacgccagt ctgcggcttg agtaatggcg ctgacgacgg cgatactgcc gacacccgtt
     3421 gctatcaccg caggcgcgcg tgccagactg ataccgccaa tcgccacggt gggataatcc
     3481 gccagtcgct caacatgccg tgccagctgt tccagcccct gcggtgcaga aggcatctgt
     3541 ttggtttgcg tcgggaacac atgtcccagc gcgatataag aggggcgtgc tgccagcgcg
     3601 acgtcgattt ccatatcgtc atgtgtcgaa acacccagcc gcaggcctgc cgcgcggatg
     3661 gcattgagat cggtggcttg caaatcttcc tgccccaaat ggacgccata cgcctgatgc
     3721 ttgatcgcga gccgccagta atcgttgata aacaatcgcg cgttatagcg gcggcccagc
     3781 gcaattgccg ccacgacatc ggcttccacc tcttcatcgc gccgatcttt gatgcgtagc
     3841 tggagagtac gtacgcctgc atccaacaga cgttcgatcc actgtacgct gtccaccact
     3901 gggtacagtc ctaaacgaaa aggtacagga ggaaaatcag gctgatacat cacgcttcct
     3961 ccttacgcag gtagatttct ccgcctctgg cacggaagtt ctccgacata tccgccattc
     4021 ccatttcaat agtttgcgtg gcggcgtaat cacgcacttc ctggctgatt ttcatcgagc
     4081 agaatttcgg cccacacatg gagcaaaaat gggcgacttt acctgactct tgcggcaggg
     4141 tttcatcgtg ataagcgcgg gcggtaaacg ggtcgagggc cagattaaac tggtcttccc
     4201 agcgaaattc gaagcgggct ttcgacatgg cgttatcgcg aatttgcgcg cccggatgcc
     4261 ctttcgccag gtcagcggcg tgggcggcaa tcttataggt gataagcccc tgcttaacat
     4321 cttctttatt aggcagaccc agatgctctt ttggcgttac gtaacagagc atcgcgcagc
     4381 caaaccagcc aatcatcgac gcaccaatcc ccgacgtgaa gtggtcatag cccggcgcaa
     4441 tatcggtagt tagcggcccc agagtgtaaa acggcgcttc gtggcagtgc tctaactcct
     4501 cggtcatatt gcggcggatc atctgcatcg gcacgtggcc tgggccttca atcatcacct
     4561 gcacgtcata ttcccaggca attttggtca gttcgcccag cgtatgcagc tcggcaaact
     4621 gcgcttcatc gttggcgtcc tgaatagaac cggggcgcag accgtcgccc agcgacagcg
     4681 aaacgtcata agcggcacag atttcacaaa tttcgcggaa gtgttgatag aggaaatttt
     4741 cctgatgatg ggagaggcac catttcgcca taatcgaacc gccgcgagag acgataccgg
     4801 tcaggcgttt cgcggtcatc ggcacatagc gcaacagtac gcccgcatgg atagtgaagt
     4861 aatccacacc ttgctcggcc tgttccagca gcgtgtcgcg gaacgcttcc caggtaagat
     4921 cttcggcgat cccgttaacc ttctccagcg cctggtagat cggcactgta ccgatcggca
     4981 ccggactgtt acgcaaaatc cactcgcggg tttcgtgaat atagcgaccg gtggagagat
     5041 ccatcaccgt atccgctccc cagcgcatgg accataccag cttttccact tcttcttcga
     5101 tggaagaggt gaccgccgag ttgccgatat tggcgttaac ttttaccagg aagttacggc
     5161 caataatcat cggctccgat tccggatgat taatgttggc cgggataatc gcacgtccgg
     5221 cagcaacttc atcacggaca aattccgcag tgatattttc cggcagacgt gcgccaaagc
     5281 tcattcccgg atgctggtgg cgtaaaactt cgctacgtat gcgctcgcgg cccatattct
     5341 cgcggatggc gatgaattcc atttccggtg tgatgatgcc ctggcgggcg tagtgcagtt
     5401 gggtgacacg gcgtcctgct ttggcgcgtt ttggtgttag tacgccgcta aaacgcagtt
     5461 cgtcgaggcc atcatctgcc agccgcgctt tagtgtaatc ggaactgcgc acggtaagtt
     5521 cttcggtatc gccgcgcgca tcgatccacg gctggcgtag ttttgccagc ccttgctgca
     5581 cgttaatggc gatctgcgga tcgccatatg ggccggaggt gtcgtagacc ggaatcgctt
     5641 cgttttcttc aaactgcggc tgttctttgc tgccgccgat tagcgtcggg ctaagctgga
     5701 tctcacgcat cggcacgcga acgccagagt gtgtgccagt gaggtaaatg cgttttgagt
     5761 tgggaaaggc ggtgccttcc agggtgtcga taaaatgttg ggcccgggcg cgttgttcgc
     5821 ggcgggtcag ttttgttgca gacatagctc attccaaaaa gttaaggacg tggcttgtca
     5881 gacgacggat gaagcaagag acgatcgccg caaaggcgat gcgatagcag attaactctt
     5941 gttcccttcg caggtattag cctgatcagg ttccgcggat cccgaataaa cggtctcagc
     6001 cagttaaggc actccgacaa gaaattagcc cccacaaacg gggcgttgaa tgtaaattac
     6061 gcgttaacag cgcagaactc aagcaggatg tttgacgcgg gcggcgtcaa gcaccagcag
     6121 aatcagctta tcttccagca caaagcgcgc ttccagcgcc tcgccgatgt cagataaaac
     6181 ctgttgaaac tcaaggtaat tatcatgatc gatggcggtt tccaggctgg aatcgtagta
     6241 atccataatc tgttgggtat tggcttcgag ttgcggccaa atcttcgcgg cgcgcgcgag
     6301 ttgcccgttg ccttccagct tatgaagaat gcgctcataa atactgaaat gtccggcaga
     6361 caagtaatcg accaggctct gacaaaaatc atcaagggct ttttcgttta gcctcatgta
     6421 cgattctttg ccaggcttaa tgccaaccag attgtagtaa gccacgagca gatgcttacg
     6481 tacatgtagc cagcgatcaa ccagtttgtt acttcctctg acgcgctccg tcaggttatc
     6541 gagctggtta agcatgattg actccgcaag tttgtattca aaaactgctc agtgagaaat
     6601 gtaaaaacca tgttaaacat gccagtgatg caaaggtagt gcaagagcta tggatcgtat
     6661 aattgaaaaa ttagatcacg gctggtgggt cgtcagccat gaacaaaaat tatggttgcc
     6721 gaagggagaa ttgccatatg gcgaagcggc aaatttcgat cttgtgggtc agcgcgcact
     6781 acaaatcggc gaatggcagg gggaacctgt ttggttagta caacagcagc ggcgtcacga
     6841 tatggggtcg gtacgtcagg tcattgatct cgatgttgtg ctgtttcaac tggccggacg
     6901 aggcgtacaa ctggcggagt tttaccgatc gcataaatac tgtggttact gcgggcatga
     6961 aatgtatccg agcaaaaccg aatgggcgat gctgtgcagc cattgccgtg agcgttacta
     7021 cccgcaaatc gccccctgca ttattgttgc catccgtcgc gatgattcga tcctcctcgc
     7081 ccagcatacc cgccatcgta acggtgtcca tacagtactt gccggattcg tcgaagtggg
     7141 cgaaaccctc gagcaggcag tcgcgcggga agtgatggaa gagagcggaa ttaaagttaa
     7201 aaacttgcgt tacgtgactt ctcagccgtg gccgtttcct cagtctttaa tgaccgcgtt
     7261 tatggcggaa tatgacagcg gcgacatcgt gatcgacccg aaagaattgc tcgaggcgaa
     7321 ctggtatcgc tatgacgatt tgccgttact cccgccgccc ggcaccgtag cgcgccgtct
     7381 gatagaagat actgtggcga tgtgtcgggc agagtatgag tgatgataca ctgaccgcct
     7441 gacgcactaa ggaacagcca aaatgaccga acttaaaaac gatcgttatc tgcgggcgct
     7501 gctgcgccag cccgttgatg tcactccagt atggatgatg cgccaggcgg gtcgctatct
     7561 accggaatat aaagccacgc gcgcccaggc gggcgatttt atgtcgctgt gcaaaaacgc
     7621 cgagctggcg tgcgaagtga ctttgcaacc gctgcgtcgc tacccgctgg atgcggcgat
     7681 cctcttttcc gatatcctca ccgtgccgga cgcgatgggg ttagggctct attttgaagc
     7741 cggagaaggt ccgcgtttta cctcgccagt cacctgcaaa gccgacgtcg ataagctgcc
     7801 aattccggac ccggaagatg agctgggtta cgtgatgaac gcggtgcgta ccattcgtcg
     7861 cgaactgaaa ggcgaagtgc cgctgattgg tttttccggc agcccgtgga cgctggcaac
     7921 ctacatggtg gaaggcggca gcagcaaagc cttcaccgtg atcaaaaaaa tgatgtatgc
     7981 cgatccgcag gcgctgcacg ctctactcga taaactggcg aaaagcgtca ctttgtatct
     8041 gaatgcgcag attaaagccg gtgctcaggc agtgatgatt ttcgacacct ggggcggtgt
     8101 gcttaccggg cgcgattatc aacagttctc gctctattac atgcataaaa ttgttgatgg
     8161 tttactgcgt gaaaacgacg gtcgccgcgt accggtcacg ctgtttacca aaggcggcgg
     8221 acagtggctg gaagcgatgg cagaaaccgg ttgcgatgcg ttgggcctcg actggacaac
     8281 ggatatcgcc gatgcgcgcc gccgtgtggg caataaagtc gcgttgcagg gtaatatgga
     8341 tccgtcgatg ctgtacgcgc cgcctgcccg cattgaagaa gaagtagcga ctatacttgc
     8401 aggtttcggt cacggcgaag gtcatgtctt taaccttggt cacggcattc atcaggatgt
     8461 gccgccagaa catgctggcg tgttcgtgga ggcagtgcat cgactgtctg aacaatatca
     8521 ccgctaagga gtgattatgg atctcgcgtc attacgcgct caacaaatcg aactggcttc
     8581 ttctgtgatc cgcgaggatc gactcgataa agatccaccg gatctgatcg ccggagccga
     8641 tgtcgggttt gagcagggcg gagaagtgac gcgagcggcg atggtgctgc tgaaatatcc
     8701 ctcgcttgag ctggtggagt ataaagttgc ccgcatcgcc accaccatgc cttacattcc
     8761 aggttttctt tccttccgcg aatatcctgc gctgctggca gcgtgggaga tgctgtcgca
     8821 aaagccggat ttagtgtttg tcgatggtca tgggatctcg catcctcgcc gtcttggcgt
     8881 cgccagccat tttggtttga tggtggatgt gccaacgatc ggcgtggcga aaaaacggct
     8941 ctgcggtaaa ttcgaaccgc tctccagcga accgggcgcg ctggccccac tgatggataa
     9001 aggcgagcag ctggcctggg tctggcgcag caaagcgcgc tgtaacccgt tgtttatcgc
     9061 taccggccat cgggtcagcg tggacagcgc gctggcgtgg gtacaacgct gcatgaaagg
     9121 ctatcgtctg ccggagccaa cgcgctgggc ggacgcggtg gcctcggaac gtccggcgtt
     9181 cgtgcgctat acagcaaatc agccctaatt caggtaaact gcggataatt tccgtatttg
     9241 agaacttaac atgttacaaa acccaattca tctgcgtctg gagcgcctgg aaagctggca
     9301 gcatgtcact ttcatggctt gcttatgcga acgcatgtac cccaattacg ccatgttctg
     9361 ccagcaaacc ggttttggtg atgggcaaat ttaccgtcgt attctcgatc tcatctggga
     9421 aacgctgacc gttaaagacg caaaagtaaa tttcgacagc caactggaga aatttgaaga
     9481 agcgattcct tcagccgacg atttcgatct gtacggcgtt tatccggcaa tcgatgcctg
     9541 cgtggcgtta agtgaactgg tccattcgcg tttgagtggt gaaacgctcg aacacgcggt
     9601 gaaagtgagt aagacctcca tcacgaccgt tgcgatgctg gaaatgactc aggttggtcg
     9661 cgaaatgagc gatgaagagc ttaaagaaaa cccagctgta gagcaagaat gggacattca
     9721 gtgggaaata ttccgacttt tagctgagtg cgaagaacgc gatatcgagc tgataaaagg
     9781 ccttagggca gacctgcgtg aggcgggtga gagcaatatt ggtataattt ttcagcaata
     9841 agaccagaaa acgtgattta acgcctgatt tgtcgtacct ggagtcttcc ctttcgcccc
     9901 ccgtctggtc tacatttggg gggcgaaaaa aagtggctat cggtgcgtgt atgcaggaga
     9961 gtgctattct ggcatttccg tcgcactcga tgcttagcaa gcgataaaca cattgtaagg
    10021 ataacttatg aacaagactc aactgattga tgtaattgca gagaaagcag aactgtccaa
    10081 aacccaggct aaagctgctc tggagtccac tctggctgca attactgagt ctctgaaaga
    10141 aggcgatgct gtacaactgg ttggtttcgg taccttcaaa gtgaaccacc gcgctgagcg
    10201 tactggccgc aacccgcaga ccggtaaaga aatcaaaatt gccgcagcta acgtaccggc
    10261 atttgtttct ggcaaggcac tgaaagacgc agttaagtaa gattgcgtgg cagtgaacag
    10321 ttttaacgaa ggggtggttt cacccctttt gtctttctgg cgtcgatcat tgatgctggc
    10381 tggcgctctg cttctcactg cctgtagtca taactcttca cttcctccct ttaccgccag
    10441 tggatttgct gaagaccagg gcgcggtacg catctggcga aaagacagcg gcgataatgt
    10501 gcatctgctt gccgtgttta gcccgtggcg cagtggcgat accacgacgc gagagtatcg
    10561 ctggcagggc gataacctca cgctcatcaa tatcaatgtt tacagcaaac cgccggtgaa
    10621 tattcgcgcg cgttttgacg atcgcggtga tctgagcttt atgcaacgtg aatccgatgg
    10681 ggaaaagcag cagctttcta acgaccaaat cgatttatac cgttatcgtg ctgatcagat
    10741 ccgccagatt agcgatgcct tacgtcaggg gagagtcgtg ctgcgccagg ggcgctggca
    10801 tgcgatggaa cagaccgtga ccacctgcga agggcaaacc attaaacctg atttagattc
    10861 gcaggcgata gcgcatatcg agcgccgcca gagccgctct tctgttgatg tcagcgtggc
    10921 atggctggaa gcgcccgaag gttcgcaatt actgttagtg gcaaactctg atttctgtcg
    10981 ctggcaaccc aacgagaaaa cgttctgatt taccagtggc ctatacccat atgaccgcca
    11041 ccaccgcagc cgccgtagcc catgcccatt ccggctccgc gcggaatacc cgcttcagcc
    11101 atcgcgatat ctcgtttcac ccgtaactca tctaacgact gacgcaaatt ctccatctct
    11161 ttggcgaccg cgttaatttt gctgctatcc ggtgggttcg cggctaacag ggcattgtat
    11221 tcataacgct tcgtcaccag ttgctgttgc agtgcgctgc tttgagcgta aaagtcatta
    11281 tggattttct gccacgctgt ctgttgttcg ctggtcaaag gcgcggcatt ttgctgccac
    11341 ataccgtgtc cgccgtgagc aaatgcagat gtcgatccca tcgccattgc tgaaagcgcc
    11401 atcattacca gggcaatttt cgtgttccgt ttcatggtta atcctccagt ggttgtctta
    11461 cttcgggtat tgcatcttcc gtgccaacga tgaaacgctg atatgacggg taatctggca
    11521 tgataaacga gtaaaaatga ctcgcctgct gcgggtagcg agtcattttt actcattgaa
    11581 acttaagcct ttgtgttaca gcgcagggta agcgctgata aaagatggca tgatttctgc
    11641 tgtcagaaag ggatgagcag gcaaagaaga agatgcgttt tatgcaacgt tctaaagact
    11701 ccttagctaa atggttaagc gcgatcctcc ccgtggtcat tgttgggctg gtagggttgt
    11761 ttgcggtgac ggtgattcgc gattatgggc gcgagactgc cgccgccaga caaacgctgc
    11821 tggaaaaagg cagtgtactt attcgcgctc ttgaatccgg ctcgcgcgtc ggcatgggga
    11881 tgcgcatgca tcatgcgcag cagcaggcct tactggaaga aatggccggg cagcctggag
    11941 tacgttggtt tgcggtcacg gatgaacaag gaacaatcgt gatgcatagc aactccggca
    12001 tggtgggaaa acagatttat tccccgcagg aaatgcagca gttacatccg ggagatgaag
    12061 aagcgtggcg gcggatcgat agcgcagacg gtgagcctgt tctggaaatt tatcgccagt
    12121 ttcaaccgat gtttggtgct ggaatgcacc ggatgcgcca tatgcagcag tatgccgcga
    12181 caccacaagc aattttcatc gctttcgacg ccagtaatat tgtgagtgcc gaagatcgtg
    12241 agcagagaaa caccctgatt atcctcttcg ccctggcgac ggtcttgctg gcaagcgtat
    12301 tgtcattctt ctggtatcgc cgctatctgc gctcgcgcca gcttctacaa gatgaaatga
    12361 agcgcaaaga gaagctggtg gcactggggc atctggcggc aggcgttgcc cacgaaatcc
    12421 gtaatccact ttcctcaatt aaagggctgg cgaaatactt tgccgaacgc gcgccagcag
    12481 ggggagaagc gcatcaactg gcgcaggtga tggcgaaaga agccgatcgt ttaaaccgcg
    12541 tggtaagcga gttgctggaa ctggttaagc caacgcatct ggctttgcag gcggtggatc
    12601 tcaacacgct gattaaccac tcattacagc tggtaagcca ggatgcaaac agccgggaga
    12661 tccagttacg ctttaccgcc aacgacacat taccggaaat tcaggccgat ccggacaggc
    12721 tgactcaggt cctgttgaat ctctatctca atgctattca ggcgattgtt cagcatggcg
    12781 tgattagcgt gacggtcagc gaaagcggcg cgggcgtgaa aatcagcgtt accgacagcg
    12841 gtaagggaat tgcggcagat cagcttgaag ccatcttcac tccgtacttc accaccaaag
    12901 ccgaaggcac cggattgggg ctggcggtcg tgcataatat tgttgaacaa cacggtggta
    12961 caattcaggt cgcaagccag gagggaaaag gctcaacgtt caccctctgg cttccggtca
    13021 atattacgcg taaggaccca caaggatgac gcacgataat atcgatattc tggtggtgga
    13081 tgatgacatt agccactgca ctattttgca ggctttactg cgcggctggg gctataacgt
    13141 cgcgctggcg aacagcgggc gacaggcgct ggagcaggtg cgggaacagg tttttgatct
    13201 tgtgctttgc gatgtgcgaa tggcggagat ggacggcatc gccacgctga aagagatcaa
    13261 agcgttaaac ccggcaattc cggtgctgat tatgactgcg tactccagcg tcgagacggc
    13321 ggtagaggca ctgaaaactg gggcgctgga ttatctcatc aagccgctgg atttcgataa
    13381 cctacaggcg acgctggaaa aggcgctcgc gcatacgcac agtattgatg ctgaaacacc
    13441 tgcggtgact gccagccagt tcggtatggt cggtaaaagc ccggcgatgc aacacctgct
    13501 cagtgaaatc gccctcgtcg cgccatcgga agccactgtg ctgatccacg gcgattccgg
    13561 caccggtaaa gagctggtcg ccagggcgat tcacgccagt agcgcacgta gcgaaaaacc
    13621 gctggtaacg ctcaactgtg cggcactcaa cgaatccttg ctggaatctg aattgttcgg
    13681 tcacgaaaaa ggggcgttta ctggagccga taaacgccgg gaagggcgct ttgttgaggc
    13741 ggacggcggc acgctgtttc tcgatgaaat tggcgatatc tcgccgatga tgcaggtgcg
    13801 tctgctgcgt gcgattcagg agcgcgaagt tcagcgtgtc ggtagcaacc agactatctc
    13861 ggttgatgtc cggctgattg cggcgaccca tcgcgatctt gccgcagagg tgaatgccgg
    13921 gcgttttcgc caggatctct actatcgcct gaatgtggtg gcgattgaag taccatcgct
    13981 gcggcaacgg cgggaagata tccctctgct ggctggccat tttctgcagc gctttgccga
    14041 gcgtaatcgc aaggcggtaa aaggttttac tccccaggcg atggatctgt tgattcatta
    14101 cgactggccg ggaaatattc gtgagctgga aaacgcggtg gaacgggcag tggtgctgct
    14161 gaccggggaa tatatttccg aacgcgagct gccgctggcg attgccagta cgccgatccc
    14221 gctggggcaa agtcaggata ttcagccgct ggtggaagtg gaaaaagagg tgattctggc
    14281 ggcactggag aaaacgggcg gcaacaaaac tgaagccgcc cgtcagttag ggatcacgcg
    14341 taaaacgtta ttggcaaaac tgtcgcgtta gttctgctcg cgttcgatag cacgccagcc
    14401 gatatctttc cggcagaagc agtcgtccca gtggatatcg gtcattaagg cataggcgcg
    14461 tttctgcgct tctgccacgg tatgacccag cgcggtgacg cacagtacgc gcccgccgtt
    14521 ggtcactacc tgctcgtcat ccgccagttt tgtgcccgcg tggaacactt tgccgcctgc
    14581 cacttcttcc agcggcaggc cgtggatcac gtcaccggtg cggtaatcac ccggatatcc
    14641 acccgcagcc atcaccacgc cgagagaagc gcgttcatcc cactcggacg ttttctcgtc
    14701 cagtttgctt tcacaggccg ctaggcagag ctcaaccaga tcggacttca tgcgcagcat
    14761 aatcggctgg gtttccggat cgccaaagcg gcagttaaat tcaataacct tcggattgcc
    14821 ctgtttgtcg atcatcaggc ccgcgtagag aaaaccggtg taggtgttgc cttccgccgc
    14881 catgcctttc acggttggcc agataatacg ttccatggtg cgctgatgaa cgtcatcggt
    14941 tactaccggc gcgggggagt aagcgcccat cccgccggtg tttggtccgg tatctttatc
    15001 gcctacgcgt ttgtgatcct ggctggtagc catcggcagc acatgctcgc cgtccaccat
    15061 cacgataaag ctcgcttctt cgccatcgag gaactcttcg ataacgatgc gatgacccgc
    15121 gtcgccaaaa gcgttgcccg ccagcatatc gtgaacagcc gcttccgctt cttccagcgt
    15181 catcgccacg ataacgcctt tcccggcagc cagaccgtcc gctttaatga cgattggcgc
    15241 gcctttctca cgcagatacg ccagcgcagg ttctacctcg gtgaagttct ggtattccgc
    15301 cgtagggatc ttatggcggg ccaggaaatc tttggtaaac gcttttgagc cttccagttg
    15361 ggccgcacct gcggttgggc cgaagatttt cagcccggcg gcgcggaagg tatcgaccac
    15421 gcctttcacc agcggcgctt ccgggccgac gatggtcaga tcaatctttt cgttttgtgc
    15481 gaaatccaac agcgccggga tatcggtcac gccaatagca acgttttgca gcgcgggttc
    15541 cagcgcagtg cctgcattac ccggagcaac aaaaacagtc tcaaccagcg gcgactgggc
    15601 cgctttccag gccagcgcgt gctcgcgccc gccgttacca atcactaata ctttcatcta
    15661 ttgctccatt aatggcggaa gtggcgcatg tcggtgaaga gcatcgcaat accgtgctcg
    15721 tcggcggcgg caatcacttc gtcatcacgg atggaaccgc caggctggat tacgcaggtc
    15781 acgcccgcag cggcggcggc atcaataccg tcgcggaacg ggaagaacgc gtcagaagcc
    15841 atcgaggaac ctttcacttc caggccttca tcggcagctt taataccggc gattttcgcg
    15901 gagtacacgc ggctcatctg gcccgcgcca ataccgatgg tcatattgtt tttggcatag
    15961 acgatagcat tggatttcac gaacttcgcc actttccagc agaacagcgc atcgcgcagt
    16021 tcctgttcgg tcggctgacg ttgggtgacg acgcgcagtt cttccgcacc gaccatcccc
    16081 aggtcacgat cctgaaccag cagaccgccg ttcacgcgtt tgaaatcaag acccggaaca
    16141 cgctcgcccc actgaccgca ggtcagaacg cgtacgttct gcttggcggc ggtgattttc
    16201 agggcttctt cgctggcgga aggcgcaata atcacttcga caaactgacg agaaatgatg
    16261 gcctgtgcgg tttccgcatc tagctcgcgg ttaaaggcaa tgatgccgcc gaatgcggag
    16321 gttgggtcgg ttttgtacgc gcgatcgtaa gcatcaagaa tggaattgcc gatagctaca
    16381 ccgcaagggt tggcgtgctt cacaatcaca catgccggct cggcgaactc tttcacgcac
    16441 tccagcgccg catcggtatc ggcgatgttg ttataagaga gggctttacc ctgaacctgg
    16501 gttgcggtag caacggaggc ttctttcaca ttctcttcta tatagaaggc agcctgctgg
    16561 tggctgttct cgccgtaacg catatcctgc ttcttaatga agttcaggtt cagcgtgcgt
    16621 gggaagcgac cggcggcttc tttgctttca ccgtggtacg ccggaaccat gctgccgaag
    16681 tagttggcaa tcatgctgtc gtaggcggca gtgtgttcga aggctttgat ggcgaggtcg
    16741 aaacgggttg caagcgtcag cgatccttcg ttgtcatcca tctctttaat aatggcgtcg
    16801 tagtcgctgc tcttcaccac gattgcgaca tctttatggt tcttagcggc ggagcgcacc
    16861 atggtcgggc cgccgatatc gatgttctca accgcatctt ccagcgagca gccttcacga
    16921 gcaacagtct gggcgaacgg atacaggtta acaaccacca tatcgatagg ctggatctga
    16981 tgttcttcca taatggcatc gtcctggccg cgacggccca gaatgccacc atgtactttc
    17041 ggatgcaggg tcttcacgcg tccatccatc atctccggga aaccggtgta atcggaaact
    17101 tcggttaccg gcagaccttt ttctgctaac agacgggcag tgccccctgt agacagcagc
    17161 tccacaccgc gtgcggaaag tgcctgggcg aattcgacga taccggcttt gtcagaaaca
    17221 ctgagcagag cgcggcggac tggacgacgt tgttgcatgg taaatcccct ggatttgact
    17281 attacagaga gcgttagctg aatttttcgc gaaaaactca gctaacgccc ctaacggggc
    17341 atccttattt ttcgcccgca ttgtaacgaa aacgtttgcg caacgctcgc gaatttttct
    17401 ctttcaatgg tgatcacaat tttgacagtg gttaccgtgg gaaaaataca gaaattacat
    17461 tgatgattgt ggataactct gtgcgtaaaa aggtataaag cggggttttg ctggggaatg
    17521 cagcagtcag tcatttttct gcaatttttc tattgcggcc tgcggagaac tccctataat
    17581 gc
//
LOCUS       DADMHM010000068        17502 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.069, whole genome shotgun sequence.
ACCESSION   DADMHM010000068 DADMHM010000000
VERSION     DADMHM010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17502)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17502)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17502
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.069"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(161..892)
                     /gene="rlmB"
                     /locus_tag="JN125_002042"
     CDS             complement(161..892)
                     /gene="rlmB"
                     /locus_tag="JN125_002042"
                     /EC_number="2.1.1.185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HAY8871831.1"
                     /translation="MSEMIYGIHAVQALQERAPERFQEVFILKGREDKRLLPLIHALE
                     AQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDG
                     VTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLVRT
                     MRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPM
                     AGSVSSLNVSVATGICLFEAVRQRS"
     gene            complement(1073..3514)
                     /gene="rnr"
                     /locus_tag="JN125_002043"
     CDS             complement(1073..3514)
                     /gene="rnr"
                     /locus_tag="JN125_002043"
                     /EC_number="3.1.13.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418600.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HAY8871832.1"
                     /translation="MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVEL
                     HIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVE
                     GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEA
                     GVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNM
                     GTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDA
                     RDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLP
                     EVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSHARLTYTKVWHILQG
                     DQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKFIFNAECRIERIEQT
                     QRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAITSFRSVLAELGLEL
                     PGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHF
                     TSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEMLQLGQHCSMAERRAD
                     EATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFIDGLVHVSSLDNDYY
                     RFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTARE
                     KAKKGDAGKKGGKRRLVGKKVNFEPDSAFRGEKKTKPKAAKKDARKAKKPSAKTQKIA
                     AATKAKRAAKKKVAE"
     gene            complement(3553..3978)
                     /gene="nsrR"
                     /locus_tag="JN125_002044"
     CDS             complement(3553..3978)
                     /gene="nsrR"
                     /locus_tag="JN125_002044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitric oxide-sensing transcriptional repressor
                     NsrR"
                     /protein_id="HAY8871833.1"
                     /translation="MQLTNFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVK
                     IINQLSRAGYVTAVRGKNGGIRLGKPASAIRIGDVVRELEPLSLVNCSSEFCHITPAC
                     RLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLLLVE"
     gene            complement(4183..5481)
                     /gene="purA"
                     /locus_tag="JN125_002045"
     CDS             complement(4183..5481)
                     /gene="purA"
                     /locus_tag="JN125_002045"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019842885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HAY8871834.1"
                     /translation="MGNNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTL
                     VINGEKTVLHLIPSGILRENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSE
                     ACPLILDYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAE
                     KLKEVMEYHNFQLVNYYKAEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDF
                     VMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGA
                     GPFPTELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLD
                     VLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKDRSGL
                     PQAALNYIKRIEELTGVPIDIISTGPDRTETMILRDPFDA"
     gene            complement(5585..5782)
                     /locus_tag="JN125_002046"
     CDS             complement(5585..5782)
                     /locus_tag="JN125_002046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2065 domain-containing protein"
                     /protein_id="HAY8871835.1"
                     /translation="MNSTIWLALALVLVLEGLGPMLYPKAWKKMISAMTNLPDNILRR
                     FGGGLVVAGVVVYYMLRKTIG"
     gene            complement(5864..6868)
                     /gene="hflC"
                     /locus_tag="JN125_002047"
     CDS             complement(5864..6868)
                     /gene="hflC"
                     /locus_tag="JN125_002047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease modulator HflC"
                     /protein_id="HAY8871836.1"
                     /translation="MRKSVIAIIIIVLVVLYMSVFVVKEGERGITLRFGKVLRDDDNK
                     PLVYEPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRISDFSR
                     YYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLEVRDALNSGSA
                     GTEDEVTTPAADNAIAEAAERVTAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTE
                     VSEAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGD
                     AEAAKLFADAFSKDPDFYAFIRSLRAYENSFSGNQDVMVMSPDSDFFRYMKTPTSATR
                     "
     gene            complement(6871..8130)
                     /gene="hflK"
                     /locus_tag="JN125_002048"
     CDS             complement(6871..8130)
                     /gene="hflK"
                     /locus_tag="JN125_002048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsH protease activity modulator HflK"
                     /protein_id="HAY8871837.1"
                     /translation="MAWNQPGNNGQDRDPWGSSKPGGNSEGNGNKGGRDQGPPDLDDI
                     FRKLSKKLGGLGGGKGTGSGGGSSSQGPRPQLGGRVVTIAAAAIVIIWAASGFYTIKE
                     AERGVVTRFGKFSHLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVE
                     MNVQYRVTNPEKYLYSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQR
                     ELEETIRPYDMGITLLDVNFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQ
                     PRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKAAPEITRERLYIETMEKV
                     LGNTRKVLVNDKGGNLMVLPLDQMLKGGNAPAAKSDNGASNLLRLPPASSSTTSGASN
                     TSSTSQGDIMDQRRANAQRNDYQRQGE"
     gene            complement(8216..9496)
                     /gene="hflX"
                     /locus_tag="JN125_002049"
     CDS             complement(8216..9496)
                     /gene="hflX"
                     /locus_tag="JN125_002049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HAY8871838.1"
                     /translation="MFDRYDAGEQAVLVHIYFTKDKDMEDLQEFESLVSSAGVEALQV
                     ITGSRKAPHPKYFVGEGKAVEIAEAVKATGASVVLFDHALSPAQERNLERLCECRVID
                     RTGLILDIFAQRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIGLRGPGETQL
                     ETDRRLLRNRIVQIQSRLERVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRIT
                     EARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQ
                     ATLLLHVIDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEE
                     NKPIRVWLSAQTGAGIPQLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIEKE
                     WMEEDGSVSLQVRMPIVDWRRLCKQEPALIDYLI"
     gene            complement(9573..9881)
                     /gene="hfq"
                     /locus_tag="JN125_002050"
     CDS             complement(9573..9881)
                     /gene="hfq"
                     /locus_tag="JN125_002050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HAY8871839.1"
                     /translation="MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVI
                     LLKNTVSQMVYKHAISTVVPSRPVSHHSNNASGGTSSNYHHGSSAQNTSAQQDSEETE
                     "
     gene            complement(9967..10917)
                     /gene="miaA"
                     /locus_tag="JN125_002051"
     CDS             complement(9967..10917)
                     /gene="miaA"
                     /locus_tag="JN125_002051"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HAY8871840.1"
                     /translation="MSDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSA
                     LIYKGMDIGTAKPNAEELLAVPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRIP
                     LLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDPVAAARI
                     HPNDPQRLSRALEVFFISGKTLTELTQTSGDALPYQVHQFAIAPASRELLHQRIEQRF
                     HQMLASGFEAEVRALFARGDLHTDLPSIRCVGYRQMWSYLEGEISYDEMVYRGVCATR
                     QLAKRQITWLRGWEGVHWLDSEKPEQARDEVLQVVGAIAG"
     gene            complement(10910..12757)
                     /gene="mutL"
                     /locus_tag="JN125_002052"
     CDS             complement(10910..12757)
                     /gene="mutL"
                     /locus_tag="JN125_002052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HAY8871841.1"
                     /translation="MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDI
                     DIERGGAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASI
                     SSVSRLTLTSRTAEQQEAWQAYAEGRDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKF
                     LRTEKTEFNHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGT
                     AFLEQALAIEWQHGDLTLRGWVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQAC
                     EDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQL
                     ETPLPLDDEPQPAPRSIPENRVAAGRNHFAEPAAREPVAPRYTPAPASGSRPAAPWPN
                     AQPGYQKQQGEVYRQLLQTPAPMQKLKAPEPQEPALAANSQSFGRVLTIVHSDCALLE
                     RDGNISLLALPVAERWLRQVQLTPGEAPVCAQPLLIPLRLKVSGEEKSALEKAQSALA
                     ELGIDFQSDAQHVTIRAVPLPLRQQNLQILIPELIGYLAKQSVFEPGNIAQWIARNLM
                     SEHAQWSMAQAITLLADVERLCPQLVKTPPGGLLQSVDLHPAIKALKDE"
     gene            complement(12767..14104)
                     /gene="amiB"
                     /locus_tag="JN125_002053"
     CDS             complement(12767..14104)
                     /gene="amiB"
                     /locus_tag="JN125_002053"
                     /EC_number="3.5.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase AmiB"
                     /protein_id="HAY8871842.1"
                     /translation="MMYRIRNWLVATLLLLCTPVGAATLSDIQVSNGNQQARITLSFI
                     GDPDYAFSHQSKRTVALDIKQTGVIQGLPLLFSGNNLVKAIRSGTPKDAQTLRLVVDL
                     TENGKTEAVKRQNGSNYTVVFTINADVPPPPPPPPVVAKRVETPAVVAPRVSEPARNP
                     FKTESNRTTGVISSNTVTRPAARATANTGDKIIIAIDAGHGGQDPGAIGPGGTREKNV
                     TIAIARKLRTLLNDDPMFKGVLTRDGDYFISVMGRSDVARKQNANFLVSIHADAAPNR
                     SATGASVWVLSNRRANSEMASWLEQHEKHSELLGGAGDVLANSQSDPYLSQAVLDLQF
                     GHSQRVGYDVATSMISQLQRIGEIHKRRPEHASLGVLRSPDIPSVLVETGFISNNSEE
                     RLLASDDYQQQLAEAIYKGLRNYFLAHPMQSAPQGATAQTASTVTTPDRTLPN"
     gene            complement(14123..14584)
                     /gene="tsaE"
                     /locus_tag="JN125_002054"
     CDS             complement(14123..14584)
                     /gene="tsaE"
                     /locus_tag="JN125_002054"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HAY8871843.1"
                     /translation="MMNRVIPLPDEQATLDLGERVAKACDGATVIYLYGDLGAGKTTF
                     SRGFLQALGHQGNVKSPTYTLVEPYTLDNLMVYHFDLYRLADPEELEFMGIRDYFAND
                     AICLVEWPQQGTGVLPDPDVEIHIDYQAQGREARVSAVSSAGELLLARLAG"
     gene            complement(14556..16103)
                     /gene="nnr"
                     /locus_tag="JN125_002055"
     CDS             complement(14556..16103)
                     /gene="nnr"
                     /locus_tag="JN125_002055"
                     /EC_number="4.2.1.136"
                     /EC_number="5.1.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-dependent NAD(P)H-hydrate
                     dehydratase/NAD(P)H-hydrate epimerase"
                     /protein_id="HAY8871844.1"
                     /translation="MTDHTMKKNPVSIPHTVWYADDIRRGEREAADVLGLTLYELMLR
                     AGEAAFQVCRSAYPDARHWLVLCGHGNNGGDGYVVARLAKAVGIEVTLFAQESDKPLP
                     EEAALAREAWLNAGGEIHASNIVWPESVDLIVDALLGTGLRQAPRESISQLIDHANSH
                     PAPIVAVDIPSGLLAETGATPGAVINADHTITFIALKPGLLTGKARDVTGQLHFDSLG
                     LDSWLAGQETKIQRFSAEQLSHWLKPRRPTSHKGDHGRLVIIGGDHGTAGAIRMTGEA
                     ALRAGAGLVRVLTRSENIAPLLTARPELMVHELTMDSLTESLEWADVVVIGPGLGQQE
                     WGKKALQKVENFRKPMLWDADALNLLAINPDKRHNRVITPHPGEAARLLGCSVAEIES
                     DRLHCAKRLVQRYGGVAVLKGAGTVVAAHPDALGIIDAGNAGMASCGMGDVLSGIIGA
                     LLGQKLSPYDAACAGCVAHGAAADVLAARFGTRGMLATDLFSTLQRIVNPEVTDKNHD
                     ESSNSAP"
     gene            16102..17241
                     /gene="queG"
                     /locus_tag="JN125_002056"
     CDS             16102..17241
                     /gene="queG"
                     /locus_tag="JN125_002056"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HAY8871845.1"
                     /translation="MSEPLDLNQLAQKIKQWGLELGFQQVGITDTDLSESEPKLQAWL
                     DKQYHGEMDWMARHGMLRARPHELLPGTLRVISVRMNYLPANAAFASTLKNPKLGYVS
                     RYALGRDYHKLLRNRLKKLGEMIQQHCVSLNFRPFVDSAPILERPLAEKAGLGWTGKH
                     SLILNREAGSFFFLGELLVDIPLPVDQPVEEGCGKCVACMTICPTGAIVEPYTVDARR
                     CISYLTIELEGAIPEELRPLMGNRIYGCDDCQLICPWNRYSQLTTEEDFSPRKPLHAP
                     ELIELFAWSEEKFLKVTEGSAIRRIGHLRWLRNIAVALGNAPWDETILTALESRKGEH
                     PLLDEHIAWAIAQQIERRNACIVEVQLPKKQRLVRVIEKGLPRDA"
     gene            complement(17224..17277)
                     /locus_tag="JN125_002057"
     CDS             complement(17224..17277)
                     /locus_tag="JN125_002057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871846.1"
                     /translation="MRFYFYSQAVDESGVTR"
BASE COUNT         4005 a         4982 c         4360 g         4155 t
ORIGIN      
        1 gcgccgtcgc cagcgccaac agattccatg tcatatatta ttccatatag atttagttta
       61 aatattaata aaatgaatat ttgcagtacg taattatctt accagctata gacaaaaaaa
      121 aaccatccaa atctggatgg cttttcataa ttcagaggaa ctagctgcgc tgacgcaccg
      181 cttcaaataa gcaaattccg gttgcaaccg aaacgttcag agaagaaaca cttcctgcca
      241 ttgggatgct gatcaactca tcgcaatgtt cacgggtcag gcgacgcata ccttcacctt
      301 ccgcgcccat caccagcgcc aggcgtccgg tcattttgct ctgatagagt gtatgatccg
      361 cctcacctgc cgtaccgacg atccagatat tctcttcctg caacatacgc atggtacgca
      421 ccaggttagt cacccgaatc agcggaacgc tttctgccgc gccacaggcc acttttttcg
      481 ccgtggcgtt gagctgggcg gagcgatctt tcggcacaat caccgcatga acaccagcgg
      541 catctgcgct acgcaggcac gcgccgaggt tatgcggatc ggttacaccg tcgaggatca
      601 gcaggaacgg ctgatcgagc gaagcgatca gatccggcaa atcattttcc tggtactgac
      661 gtcctggctt cacgcgggcg ataatgccct gatgcacggc accgtcgctt ttctcgtcga
      721 gatattggcg gtttgccagc tggataacca cgccctgggc ttcgagggcg tgaatcagcg
      781 gtaacagacg tttatcttca cggcctttta aaataaagac ttcctgaaaa cgttcagggg
      841 cgcgctcctg cagggcctgc actgcgtgga tgccgtaaat catttcgctc attaatgtac
      901 tcgttgttta cgttttgcct gatgcactac gtttatccgg cctacatgat ctctgcaata
      961 tattgaattt gcgtgattat gtaggccgga taaggcgttc acgccgcatc cggcatgaac
     1021 aaagcgcatt ttgtcagcaa tctaaccctc ttctgtttga agagggtaat gatcactctg
     1081 ccactttttt cttcgccgca cgcttcgctt tggtcgcagc agctattttc tgcgttttcg
     1141 ccgatggctt tttcgctttt ctcgcgtctt tcttcgctgc tttcggcttc gtttttttct
     1201 caccgcggaa ggcgctgtct ggctcaaagt ttaccttttt accgaccaga cgacgcttgc
     1261 cgcctttttt acctgcatcg ccttttttcg ctttctcgcg cgccgtttta ccgacgttgc
     1321 gcggtgcgcg ttcgctggag atcaggctaa agtcgatttt gcgctcgtcc atattaaccg
     1381 cttcgacgcg aacttccacg cgatcgccca gacgataagt ctggccgctg gattcaccca
     1441 tcagccgttg ccctacctgg tcaaagcgat agtagtcatt gtccagcgaa gagacatgga
     1501 ccagaccatc aatgaataag tcgtccagac ggacaaagaa tccaaagcca gtgacgctgg
     1561 aaattacgcc tttaaagacg ttacctacct ggtcgagcat gaagtcacac ttcagccagt
     1621 cagccacatc gcgcgttgct tcgtcggcac gacgttccgc catcgaacag tgctgaccca
     1681 gttgcagcat ttcttccatc gaataatggt agccgccggt ttcagtggtg ttgccctgat
     1741 gcccctgctc tttcgccagc agatatttaa tggcgcggtg cagcgtcagg tctggataac
     1801 gacgaatcgg cgaagtaaag tgcgcatagg actgcaatgc caggccaaag tgaccacggt
     1861 tttctggatc gtaaatcgcc tgtttcatcg agcgcagcag catggtttgc agcatttctg
     1921 catcaggacg atcggcaacc gactccagca gctccgcgta gtcacgcggt tccggcttgt
     1981 taccgcccgg cagttccagc cccagctccg ccagtactga acggaaagag gtaatcgctt
     2041 cggtgctcgg cttgtcgtga atacggaaca atgctggttc tttggctttc tcaacgaaac
     2101 gcgccgccga gatattcgcc agaatcatgc actcttcaat taacttgtgt gcgtcgttac
     2161 gctgagtctg ttcgatacgc tcaatacggc attcagcgtt gaaaataaac ttcgcttctt
     2221 cgctctcaaa tgagatcccg ccacgttctt cacgggcttt atccagcact ttatagaggt
     2281 tatgcaactc ttcgagatgc ttaaccagcg gagcgtactg ctcgcgcaga tcctgatcgc
     2341 cctgcagaat atgccagact ttggtgtagg tcagacgcgc gtgagagctc atcaccgctt
     2401 cgtagaattt gtagcccgtc aggcggcctt tcgacgaaac cgtcatctcg cacaccatac
     2461 acaggcggtc tacctgcgga ttgagcgagc acagaccgtt agagagcact tccggcagca
     2521 tcgggataac ctgcgaaggg aagtacaccg acgtaccacg attacgcgct tctctatcca
     2581 gcggcgttgg cggacgcaca tagtagctga cgtcggcaat cgcgacccat aaacgccagc
     2641 cgccgccgcg ttttttctcg cagtaaaccg catcgtcaaa gtcacgggcg tcttcgccat
     2701 caatggtgac cagcggtaaa tcgcgcaaat cgacacggcc cgcttttgct tcttccggca
     2761 cttcttcttt cagcccggca acctgttgct caacagcctg cggccagatg tacggaattt
     2821 catgggtacg caaagcgata tcaaccgcca tgccggtgcc catattgtcg cccagcactt
     2881 cgacgatttt acccaccgct ttggtacggc gagtcgggcg ttgggtcagt tcaacaacca
     2941 ccacaaagcc catccgcgcg cccatgatct gatcgggcgg gattaagata tcgaagctca
     3001 gacggctatc gtcaggaacc acaaagccga cgcccgcttc ggtaaagtag cgaccaacaa
     3061 tctggctggt ttttggcacc agtacgcgga caatacgcgc ttcacgacga cctttacggt
     3121 cagcacccag cggctgagcc agcacctgat cgccatgaat gcaggttttc atctgctcgc
     3181 tggagagata caaatcatct ttacgccctt caacccgcag aaagccgtag ccatcacggt
     3241 ggccaataac ggtacctttc accaggtcga ggcgttccgg cagcgcatag cactgacgac
     3301 gagtgaagac cagttgacca tcgcgctcca tcgcgcgcag gcggcgacgc aggccttcaa
     3361 gctgctcttc gccttcaatg tgcagttcta ccgccagctc atcacggctg gccggttttt
     3421 cacgtttggt taaatgttcg aggataaatt cccgactagg gatgggattc gcgtattttt
     3481 cagcttcgcg ttcctggaaa ggatcttgtg acatctcggt tcctccgttg tcatctctga
     3541 tgaagatttt cgtcactcca ccagcaataa tttataaagc ggttgattct cttcaaccaa
     3601 atcggcaagc gtgtagttat ccagttccgt aagaaaactt tgcacggcct tagaaagcgc
     3661 ctgtttcaac cgacaggcag gtgtaatgtg gcaaaactca ctgctgcaat tcaccagcga
     3721 taagggctcc agctcgcgca ccacatcacc aatacgtatc gcactcgccg gtttacccaa
     3781 gcgaatgccg ccattttttc cacgaacagc agtcacgtag ccggcacgac taagttgatt
     3841 gattattttg accatatgat tacgggagac gccgtagacg tcagtcactt cagaaatact
     3901 ggtcatccgc ccttctggca atgacgccat gtagatcagc gcacgtaatc cgtaatcagt
     3961 gaaattcgtt aactgcacat caacctcaaa agggaaatcg ggaaaaaata catttatatt
     4021 gatgataaac cagccacaag ctgtgtcgct aatttatttc agttcgggga aggaaaaaag
     4081 cgaggattta acactgtgtc ggatagcgta atggcttaac cgacacagca atgtatcaca
     4141 ctgttagccc ggcaggcaaa atatctgcca ggcgtaccag aattacgcgt cgaacgggtc
     4201 gcgcagaatc atagtttcag tacgatccgg accggtagag atgatatcga tcggcacacc
     4261 ggtcagctct tcaatacgct tgatgtagtt cagcgccgcc tgcggcagcc cgctacgatc
     4321 tttcacgccg aaagtggatt cagaccagcc cggcatggtt tcgtaaatcg gctctacacc
     4381 tttccagtcg tcagctgcca gcggagtggt agtcacttcg cgaccatccg gcatacggta
     4441 agccacgcag agtttaacct ctttcaggcc atccagaacg tccagtttag tcaggcagaa
     4501 gccagacagg gagttcagct gtaccgcacg acgaacggca acggtgtcca gccagccggt
     4561 acgacgacga cgacccgtcg ttgcgccgaa ttcgttaccc tgcttgcaga ggaactcgcc
     4621 agtttcatca aacagttcgg tcgggaaagg acctgcaccc acacgagtgg agtaagcttt
     4681 gaggataccc agaacgtaat caacataacg cgggcccagg ccggaaccgg tcgccacgcc
     4741 accagcagtg gtgttggaag aagttacgta cggataagta ccgtggtcga tatccagcag
     4801 cgtaccctgc gcaccttcaa acatgacgaa atcgccacgc tgacgcgcct ggtcgagcag
     4861 gtcagaaacg tcaaccacca tagaagtcag gatgtcggca acagccatcg tatcatccag
     4921 aactttctgg taatcaaccg cttcagcttt gtagtagtta accaactgga agttgtgata
     4981 ttccatcact tctttcagtt tttcagcgaa ggtttctttg tcgaaaaggt cgccaacacg
     5041 cagaccgcga cgtgccactt tatcttcata agcaggcccg ataccacgac cggtggtgcc
     5101 gatcgctttc gcgccacgcg ctttctcacg cgcgttatcc agcgcaacgt gataatcaag
     5161 gatcagcgga catgcttcag acagcagcag acgctcacga acggggatgc cacggtcttc
     5221 cagttctttc atctctttca tcagcgcggc cggagacagc acaacaccgt taccgatgat
     5281 gctggttaca ttctcgcgga gaatacctga tggaataaga tggagaacgg ttttttcacc
     5341 gttgattacg agagtatggc ctgcgttgtg accgccctgg tagcgtacaa catatttagc
     5401 ccgttcagtc agaagatcga cgatcttacc tttaccttcg tcaccccatt gggtgcccag
     5461 tacgacgacg ttgttaccca tttttcaaaa tcaccgtttg cttaaaaatg gattctacca
     5521 tcgctttttc agagttacag cactttttgc actcaaaaat gacctcgatc agtctgtttt
     5581 ttgttcagcc aatcgttttc ctcaacatgt agtagaccac aacgcccgca accacaagtc
     5641 caccgccaaa acgacgtaaa atattatcgg gcaaattggt catcgcagag atcatcttct
     5701 tccatgcctt cgggtaaagc atcggcccta aaccttccag taccaaaacc agggcaagcg
     5761 ccagccagat tgtcgaattc attcattatc cttatagaaa aagaaaacca ccgacatccc
     5821 tgaggatgcg gtggctttat tgacctgtac cgcagtcgtt atattaacgc gttgcggaag
     5881 tcggcgtctt catgtagcgg aagaaatcgc tatccgggct catgaccatc acgtcctgat
     5941 tgccagagaa gctgttctca taagcacgca ggctacggat gaatgcgtag aagtccggat
     6001 ctttactgaa tgcatcagca aacagtttgg ctgcttcggc atcgccttca ccacgcatga
     6061 tgcggccctg acgctcagct tctgccagcg ttctggtcac ttcatagtcg gcagtcgcgc
     6121 gcagtttttc cgcttcttcc tgaccttgtg aacggtgacg acgcgctacc gcttcacgct
     6181 cggcgcgcat acggttgtag atcgcttcag acacttcggt cggcaggttg atctgcttga
     6241 tacgcacatc gacaacttca atacccagcg ccgccatact gttcgggttg atgaccggaa
     6301 ctttgccctt cgtctcagcc gttacgcgct ctgccgcttc ggcaatggcg ttatctgctg
     6361 ccggggtagt aacttcatct tctgtacccg cagaaccgga gttcagcgcg tcacgtactt
     6421 cgagggtcag acgaccacgg gaatcagtga cgatatcttt cacgtccagg cgaccaattt
     6481 cagaacgcag acggtcagag aacttacgtt tcaacagcac ttccgcttgc gaaatgtcgc
     6541 caccacccgt tgccaggtag taacggctga aatcgctgat gcgccatttg atgtaagagt
     6601 cgacgatcag gtctttcttc tctttggtca caaagcggtc ggcctggttg tccatggtct
     6661 gaatacgtgc gtcgagcatt ttcaccgttt caatgaacgg tatcttgaaa tgcagacccg
     6721 gctcataaac cagaggtttg ttgtcatcgt cacgcagtac cttaccaaaa cgcagcgtaa
     6781 taccgcgctc accttctttg acgacaaaga cagacatgta aagcactacc agcacgatga
     6841 tgataatcgc gataactgac ttacgcatcg ttattccccc tgacgctggt agtcgttacg
     6901 ctgcgcgttg gcgcggcgtt ggtccataat atcgccctga ctggtggacg acgtgttgct
     6961 tgctccactg gttgtggagg aagaggctgg cggcaaacgc agcagattgc tggcaccgtt
     7021 atcgctcttc gccgcagggg cgttaccacc tttcagcatc tggtctaacg gcaggaccat
     7081 caggttgcca cctttatcgt taaccagcac tttgcgggtg ttacccaaca ctttttccat
     7141 cgtctcgata tacagacgct cgcgagtaat ttccggcgcg gctttatatt ccggcagaag
     7201 tttagcaaag cgcgccactt caccctgagc ttccaggatg gtctgggcct tgtacgcacg
     7261 cgcctcttcg aggatacgtt gcgcctgacc gttcgcacgc ggctgaactt cgttggtata
     7321 cgcttctgct tcacgaatgt attgctgttc gttttcacgc gcggcaatcg catcgtcaaa
     7381 cgccgctttt acttcttccg gcggacgagc agcctggaag ttgacgtcca gcagagtgat
     7441 gcccatgtca tacggacgaa tcgtctcttc cagttcgcgc tgggtatcgc tacgaatcac
     7501 ggtacgacct tccgtcagaa tgcggtccat ggtgtattta ccgataaccc cgcgcagggc
     7561 gctgtcggta gcctgacgca ggctgtcatc cgggctggtc acgctataca gatatttttc
     7621 cggattggta acgcggtact gcacgttcat ctcaacgcgc actacgttct cgtccgacgt
     7681 cagcatcaca ccggaagcgg ccagttcacg cacggcttcc acgtttaccg gtttgacttc
     7741 gtcgataaac gtcggtttcc agttcagacc cggctcaacc agatggctga atttaccaaa
     7801 gcgtgttacc acgccgcgtt cggcttcttt aatggtatag aaaccactgg ccgcccagat
     7861 aatgacaatc gctgccgctg cgatggtaac gacacgaccg ccaagctgcg ggcgcgggcc
     7921 ttgcgatgaa ctgccaccgc cagatccggt gcctttaccg ccgcccagac caccgagctt
     7981 tttgctcagt ttgcggaaga tatcatctaa atcaggtggc ccttgatcgc gaccgccttt
     8041 gtttccattt ccctcagagt tgccgccagg tttgctgctt ccccacgggt cgcggtcttg
     8101 tccgttatta ccgggctgat tccacgccat gtttgtgctc catatttgtt atgcggtgat
     8161 ccctgttgtc tttcgacgcc agaggatatg actccacgct tcagacgcta cgccgttaga
     8221 tcaggtaatc gatcaacgcc ggttcttgtt tacagaggcg acgccagtca acgatcggca
     8281 tacgaacttg cagacttacg ctgccgtcct cctccatcca ctctttttct attgcctgaa
     8341 gctgataaaa acgacttctc agacgccctt cctgcggtgg cagacgcaat gtatgctgcg
     8401 ccacctcgcc ggaaagccgc tccgtcaaag cctgaaaaag ctgtggtatc cccgctccgg
     8461 tctgtgcgga aagccagaca cggatcggtt tgttctcttc gtcccgatca atacgcggtt
     8521 cgaaatcttc cagcatatcg atcttgttca tcaccagcag ggttgggatc tcgtgagcgt
     8581 cgatctcttc aagaaccgta ttcaccgctt cgatgttttc ttgtacacgc acatccgccg
     8641 catcaatgac gtgcagcagt aatgtggctt gccgcgtctc ttgtaacgtg gctttaaatg
     8701 ccgccaccag atcgtgcggc agatggcgaa taaaccctac ggtatctgca agtacggttt
     8761 caccgacatc cgcgacgtca atacgccgca acgtcgggtc gagggtggca aacaactggt
     8821 ctgccgcgta gacccgcgct tcggtgatgc gattgaaaag ggtagattta ccggcgttgg
     8881 tatatcccac cagcgaaaca gtaggaacgt cggctttgat acgcgattgc cgcccctgct
     8941 cacgctgctt ttcaactctt tccaggcgcg actgtatctg cacgatgcga ttacgcaaca
     9001 aacgacggtc ggtttcgagc tgggtttcac ccggaccacg caaacctatc ccgcctttct
     9061 gtctttcaag gtgggtccag ccacgcacca ggcgcgtagc cagatggcgc agctgcgcca
     9121 gctcaacctg caacttaccc tcatgggtac gcgcacgttg ggcgaaaata tctaaaataa
     9181 ggccggtgcg gtcgatgact cgacactcgc acaaacgctc caggttacgc tcttgcgccg
     9241 ggctcagggc atggtcaaaa agaacgaccg aagcacccgt cgctttgaca gcttccgcaa
     9301 tttcaactgc tttaccttca cctacaaaat actttgggtg cggcgcttta cggctaccgg
     9361 taatcacctg caatgcttcg acaccggcgg aagaaaccag agattcaaac tcctggaggt
     9421 cttccatatc tttgtctttc gtaaaataga tgtgtaccag taccgcctgc tcaccagcat
     9481 cataacggtc aaacaagcgt ataaccctct aaatagatca gcggggaacg caggatcgct
     9541 ggctccccgt gtaaaaaaaa cagcccgaaa ccttattcgg tttcttcgct gtcctgttgc
     9601 gcggaagtat tctgcgcgct gctaccatga tggtagttac tgctggtacc gccactggcg
     9661 ttgttactgt gatgagaaac cggacgagac gggacaacag tagaaatcgc gtgcttgtaa
     9721 accatctggc tgaccgtgtt tttcaacagg atcacgaact gatcaaaaga ctcgatttgc
     9781 ccttgcagct taataccatt caccaaataa atagaaactg gaacacgttc ccgacgcagt
     9841 gcgttcagga acggatcttg taaagattgc cccttagcca ttctctcttt tccttatatg
     9901 cttatttgta ctttgaacct ttcgattctg aaaaaattgc gcacgatacg tctcaattgt
     9961 acacattcag cctgcgatag caccaacaac ctgtaatact tcgtcacgcg cctgttctgg
    10021 tttttcactg tcaagccagt gaaccccttc ccaaccacgc agccaggtta tctgccgctt
    10081 cgccaactgt ctcgtggcgc aaacacctcg ataaaccatt tcatcgtatg agatttcgcc
    10141 ttcaaggtaa gaccacatct ggcgataacc cacgcaacga atggaaggca agtccgtatg
    10201 caaatctcct cgggcaaaaa gcgcccggac ttctgcttca aaacctgaag ccaacatctg
    10261 atgaaaacgc tgctcaatgc gttgatggag cagttcacgg ctcgccgggg cgatggcgaa
    10321 ctgatgcacc tgatacggta gagcgtctcc tgacgtttgc gtcagttccg ttaaagtttt
    10381 acccgaaatg aaaaaaactt ccagtgcccg ggaaagcctt tgtggatcat ttggatgaat
    10441 ccttgctgcc gcaaccggat ctacctcctg aagttgacga tgcaatgact cccaaccttg
    10501 ctctgccgcc tgttgctcaa ttctggcccg cacttccggg tctgccgacg gtagcggcga
    10561 caacccttcc agcaatgcct tgaaatacaa catcgtaccg cccactaaca gtgggatccg
    10621 ccccgccgcg gtgatatcgg ccatttccgc cagcgcatcg cggcgaaaat cagcagccga
    10681 gtaagcctgc gacggatcgc gaatatccag caatcggtgc ggcacggcga gtaactcttc
    10741 agcgttcggc ttcgccgtcc cgatatccat ccctttgtaa ataagggcag aatcaacgct
    10801 tatcaactct actggtaaaa ttttacgcag ctcaatggct aacgccgttt taccggaggc
    10861 cgtcggcccc atcaaaaaaa tcgccttagg caggctcgcc ttactgatat cactcatctt
    10921 tcagggcttt tatcgccgga tgtaaatcaa cagattgtaa cagaccaccc ggcggcgttt
    10981 tcacaagttg cggacataac cgttccacgt ccgccagcag ggttatggcc tgtgccattg
    11041 accactgcgc atgttcgctc atcagatttc gtgcaatcca ctgcgcaata ttgccaggtt
    11101 cgaatacgga ctgcttcgcc aggtagccta tcagttcagg aatcaagatt tgtaaatttt
    11161 gttggcgtaa gggtaaaggc acggccctga tggtcacatg ctgtgcatct gactggaaat
    11221 caatacccaa ttccgccagg gcagactgcg ctttttctaa tgccgatttt tcttcgccag
    11281 aaacttttag ccgcaacgga ataagcagcg gctgagcgca aactggcgct tcacccggcg
    11341 tcagttgtac ctgacgtagc caacgttctg ccactggcaa ggctaaaagt gaaatgttgc
    11401 cgtcgcgctc cagcaacgca cagtcggaat ggacgatagt cagtacccga ccaaaactct
    11461 gactgttcgc cgcaagtgca ggttcctgcg gttccggcgc ttttaatttt tgcatcggcg
    11521 cgggcgtttg caaaagctgg cgatacactt caccttgctg tttctggtag cctggctgcg
    11581 cattcggcca aggggcagcc ggacgactgc ctgatgctgg cgcaggagtg tagcgcggag
    11641 ctaccggctc acgagctgcc ggttctgcaa agtgattgcg ccccgccgcc acgcggtttt
    11701 ccggaatgga acgcggtgca ggttggggtt catcgtccag cggtagcggc gtttccagtt
    11761 gctgttgtag cacgctcagc acgccctgat agataaaatc atgcaccaga cgcgactgat
    11821 ggaaacgcac ttcgtgtttg gcggggtgca cgttgacgtc cacctgatgc ggatcgatct
    11881 ccagatacag cacaaatgcc ggttgctgat cggcccccag tttgtcttcg caggcctggc
    11941 ggatcgcgtg attgatcagg cgatcgcgca tcatgcgacc gttcacgtag caatactgaa
    12001 tttctgccag tgcgggcgtg gtgtgatttg gatcggccac ccagccgcgt agcgtgagat
    12061 cgccgtgttg ccattcaatc gccagcgctt gttcaagaaa agcagtgccg caaatcgcgc
    12121 ctaagcgccg ttctttttgc ccgccttccg gcactgcgcg gtactgacgc acaattttac
    12181 cgttatgcga caggttgatc gtgacgtcga aacgcgccag cgcaatgcgg cggatgatct
    12241 catcaatgtg gttaaattcg gttttctcgg tgcgcaggaa tttgcgccgc gccggggtgt
    12301 tgtagaacag atccagcacc tccagcgtcg tccccacagg atgcgccgcc ggttttaccg
    12361 tcacgttcat atcgcgccct tcggcatagg cctgccaggc ttcctgctgt tctgcggtgc
    12421 gtgaagtgag cgtcaggcgg gaaaccgaac tgatactcgc cagcgcctca ccgcgaaagc
    12481 ccaggctgat aatggcttcg agatcgtcca gagaggcgat tttactggtg gcatgacgag
    12541 ccagcgccag cgccagctca tcttttttga taccgcagcc gttatcacga atgcggataa
    12601 gtttcgcccc accgcgttcg atatcaatat cgatacgcgt cgcacctgca tcgaggctgt
    12661 tttccaccag ttctttgact accgacgcag gtcgctcgac cacctcacct gcggcaatct
    12721 ggttcgccag ttgtggcggt aagacctgaa ttggcatcaa tcgtccttag tttggcagcg
    12781 tgcgatctgg cgtcgtcacc gtactggccg tttgtgccgt tgcaccctgc ggcgcagatt
    12841 gcatcggatg cgcaaggaaa taattgcgca ggcctttgta aatggcttct gccagctgtt
    12901 gttggtaatc gtcgctcgcc agcaaacgtt cttcgctgtt gttgctgata aaaccggttt
    12961 cgaccagtac tgacgggata tccggcgaac gcagaacgcc gagactcgcg tgttctggtc
    13021 ggcgtttatg tatttcgcca atgcgttgca actgactgat catactggtc gctacatcat
    13081 accctacccg ctgggaatga ccgaactgta aatccagcac cgcctggctt aaatagggat
    13141 cagactgact gttcgccagc acatcgcccg ccccacccag cagctccgaa tgtttctcgt
    13201 gctgctccag ccagctggcc atttcgctgt tggcgcgacg gttagagagc acccatacgg
    13261 aagcgccagt cgcactgcgg ttcggtgcgg catcagcgtg aatagacacg aggaaattag
    13321 cgttttgctt acgtgccaca tcgctgcgcc ccatcaccga aataaagtaa tccccgtcac
    13381 gggttaaaac gcctttaaac atcggatcgt cattgagcaa agtacgcaat ttacgcgcga
    13441 tggcgatggt gacatttttc tcccgcgtac caccggggcc gatagcgcca gggtcctgac
    13501 cgccgtgtcc ggcatcaata gcgatgataa ttttatcgcc agtgttagcc gtcgcgcgcg
    13561 ctgccggacg cgttaccgta ttactgctga taacacccgt agtgcggtta ctttccgttt
    13621 taaacggatt gcgcgccggt tcgctgacgc gcggtgcgac aaccgcaggc gtttcaacgc
    13681 gtttcgcaac cacgggcggc ggaggaggcg gtggcggcac atcggcgtta atcgtaaaga
    13741 cgacagtgta attgctgcca ttctgccgct tcaccgcttc ggttttacca ttttcggtaa
    13801 gatcgaccac cagccgtagc gtttgtgcat ctttaggcgt tccagagcga atcgccttca
    13861 ccagattatt gccgctgaac aacaacggca gtccctgaat cacgcccgtt tgtttgatat
    13921 cgagcgccac ggtgcgtttg ctttgatggc taaacgcata atcaggatcg ccaataaaac
    13981 tcaacgttat ccgcgcctgt tgattaccgt tagaaacctg aatatcagag agcgtcgcgg
    14041 cacccaccgg cgtgcacagc agcagcagcg tcgctaccaa ccaatttctg atgcgataca
    14101 tcatcccgcc acctttcaaa ggttaaccgg ctaaacgcgc cagcaacaat tcacccgcag
    14161 aggaaaccgc actcacgcgc gcctcacggc cttgtgcctg ataatcaatg tgtatttcga
    14221 catccgggtc aggaagaaca cctgtacctt gttgtggcca ctccaccagg cagatggcat
    14281 cgttggcaaa ataatcgcgg atccccataa actccagctc ctcgggatcg gcaaggcggt
    14341 acaaatcaaa gtgataaacc attaaattgt cgagcgtata gggttcgacc agcgtataag
    14401 tggggctttt gacattaccc tgatgaccca gagcttgtaa aaagccccgg ctaaaggtgg
    14461 tcttacctgc gcctaaatcg ccatacagat agattacggt tgcgccatcg caggctttcg
    14521 ctacccgctc gcccaggtct aatgttgcct gctcatcagg gagcggaatt actcgattca
    14581 tcatggtttt tatcagtcac ttccgggtta acaatacgct gtagcgtgga aaagagatcg
    14641 gttgccagca tcccgcgcgt tccaaaacgc gccgccagta cgtcagctgc cgcaccgtgc
    14701 gcgacacagc ccgcacaggc ggcatcatac ggcgacagtt tttgcccaag caatgcgcca
    14761 ataataccag agagcacatc gcccatgccg cagctcgcca tgcctgcatt tccggcatca
    14821 ataatgccta aagcgtcagg atgggcggcg accacggttc cggcaccttt cagcaccgct
    14881 acgccgccat aacgttgtac cagacgtttg gcgcaatgta agcggtcact ttcaatttca
    14941 gcgacggaac agcctaacaa ccgtgcggcc tcgccaggat gcggcgtgat cacgcgattg
    15001 tgacgcttat cgggattgat tgccagcagg ttcaatgcat cggcatccca caacatcggt
    15061 ttgcgaaaat tctcaacttt ttgcagtgct tttttccccc actcttgctg gcccagaccg
    15121 ggaccaatca ccaccacatc ggcccattcc aggctttcgg taagagagtc catcgtcagt
    15181 tcatgcacca tcaattccgg tcgtgcagtc agcagcggcg caatgttttc actgcgggtc
    15241 agtactcgga ctaaaccagc accagcacgc agcgccgctt cccccgtcat acgaatagcc
    15301 cccgccgtgc cgtgatcgcc accgataatt accagccgcc cgtgatcgcc tttatgcgaa
    15361 gtcgggcgac gcggttttag ccagtgagaa agttgttctg ctgaaaaccg ctgaattttc
    15421 gtctcctgac ctgccagcca actatccagc cccagtgagt caaaatgcag ttgtccggta
    15481 acatcccgcg cttttccagt gagcaagcct ggtttcagcg caataaaagt gatggtgtga
    15541 tcggcgttga tcaccgcgcc tggcgtagcg ccagtttcag ccagcaggcc ggaagggata
    15601 tcaaccgcca caatcggcgc aggatgggaa ttagcgtggt cgattaactg gctaatggat
    15661 tcgcggggcg cttgccgcaa accggtaccg agcagcgcat caacaatcag atctaccgat
    15721 tcgggccaga caatattcga agcatggatc tcgccacccg cgtttaacca tgcttcgcgt
    15781 gccagcgcgg cctcttccgg caacggtttg tcgctctcct gggcaaacaa cgtgacctca
    15841 atgccgaccg ctttggccag tcgcgcgacc acgtagccat cgccgccgtt attaccatga
    15901 ccgcacagca ccagccagtg gcgggcgtca ggatacgccg aacgacacac ctggaatgcg
    15961 gcctcgccag cgcgaagcat cagctcatag agtgtgagcc ccagcacatc tgccgcctcg
    16021 cgttctccgc ggcggatatc gtcggcgtac cagacggtgt gtggtatact tacggggttt
    16081 ttcttcattg tatggtccgt catgtcagag cccctcgatc tcaatcagtt agcgcaaaaa
    16141 attaaacagt gggggctgga actgggcttt cagcaggtag gtattaccga taccgatctc
    16201 agcgagtccg agcccaaact gcaagcatgg ctggacaaac aataccacgg cgaaatggac
    16261 tggatggcac gtcacggtat gctgcgcgct cgccctcatg agttattgcc cggtacgctg
    16321 cgcgtgatca gcgtgcggat gaattacctt cctgctaacg ccgcatttgc cagcacgctg
    16381 aaaaacccca aactcggcta tgttagccgt tatgcgctgg gccgtgacta tcacaaactt
    16441 ctgcgcaacc gactcaaaaa gctgggcgag atgattcagc aacattgtgt ttcgctgaat
    16501 tttagaccgt ttgtcgattc tgcgcctatt ctcgagcgcc cgttagctga aaaagctggg
    16561 ctcggctgga caggtaagca ctcacttatc ctcaatcgcg aggccggttc gttcttcttt
    16621 ttaggcgaat tgctggtcga tattccgctg cccgtggatc aaccagtcga ggaaggatgc
    16681 ggtaaatgcg tggcctgtat gacgatttgc ccgaccggtg ccatcgtcga gccatatacc
    16741 gtcgatgctc gccgctgtat ctcttatctc accatcgaac ttgaaggggc gatcccggaa
    16801 gagttgcgac cgttaatggg aaaccgtatt tacggttgcg atgactgcca gcttatctgc
    16861 ccgtggaatc gctattcaca actcaccaca gaagaggatt tcagcccgcg taagccgcta
    16921 cacgcaccgg aactcattga gttattcgcc tggagcgaag agaagttttt aaaagtcacg
    16981 gaaggatcgg cgattcgtcg tattggtcac ctgcgttggc tgcgtaatat cgccgtagca
    17041 ttaggcaatg ccccttggga tgaaacgatt ttgacagcgc tggaaagtcg taaaggtgag
    17101 cacccacttc tcgatgagca catagcgtgg gcgattgcgc agcaaataga gagacgaaat
    17161 gcgtgcatag tcgaagtgca attgccgaaa aaacagcgtc tggttcgggt gattgaaaaa
    17221 gggttaccgc gtgacgcctg attcatccac agcttgtgaa taaaaataaa aacgcattgc
    17281 aattcaagac gaataaaatc gtcaagtgat cgactcgaca aaacggaatc ttaattttta
    17341 acttatctat caataggtta aaaaaatact attcaccgtg cgaagtttct ttgaaattaa
    17401 gattacagcc tgaggctgtg gataactctg tttacaagag tttgtcagag acaacgaaaa
    17461 ccagcaataa cgcatcgctg tggatatttt attgagagaa ga
//
LOCUS       DADMHM010000069        17498 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.070, whole genome shotgun sequence.
ACCESSION   DADMHM010000069 DADMHM010000000
VERSION     DADMHM010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 17498)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17498)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17498
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.070"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(48..2645)
                     /gene="topA"
                     /locus_tag="JN125_002058"
     CDS             complement(48..2645)
                     /gene="topA"
                     /locus_tag="JN125_002058"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000513601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HAY8871847.1"
                     /translation="MGKALVIVESPAKAKTINKYLGSDYVVKSSVGHIRDLPTSGSAA
                     KKSADSTSTKTAKKPKKDERGALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQLAEK
                     ADHIYLATDLDREGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRQAFNKPGELNID
                     RVNAQQARRFMDRVVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEE
                     FWEVDASTTTPSGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPT
                     TTKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNM
                     VRGYISDNFGKKYLPESPNQYASKENSQEAHEAIRPSDVNVMAESLKDMEADAQKLYQ
                     LIWRQFVACQMTPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKVMPALRKGDEDRIL
                     PAVNKGDALTLVELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRG
                     YVRVENRRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENSLDQVANHEAEWKAVLDH
                     FFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCPTCGRKMGIRTASTGVFLGCSGYAL
                     PPKERCKTTINLVPENEVLNVLEGEDAETNALRAKRRCPKCGTAMDSYLIDPKRKLHV
                     CGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHLKMGRFGKYMACTNEECKNTR
                     KILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVFLAANTFPKSRETRAPLVE
                     ELYRFRDRLPEKLRYLADAPQQDPEGNKTMVRFSRKTKQQYVSSEKDGKATGWSAFYV
                     DGKWVEGKK"
     gene            3026..3277
                     /locus_tag="JN125_002059"
     CDS             3026..3277
                     /locus_tag="JN125_002059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciN family protein"
                     /protein_id="HAY8871848.1"
                     /translation="MNKETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLV
                     FTGDYFLDEQGLPTAKSTAVFNMFKHLAHVLSEKYHLVD"
     gene            complement(3313..4362)
                     /gene="sohB"
                     /locus_tag="JN125_002060"
     CDS             complement(3313..4362)
                     /gene="sohB"
                     /locus_tag="JN125_002060"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease SohB"
                     /protein_id="HAY8871849.1"
                     /translation="MELLSEYGLFLAKIVTVVLAIAAIAAIIVNVAQRNKRQRGELRV
                     NNLSEQYKEMKEELAAALMGSHQQKQWHKAQKKKHKQEAKAAKAKAKLGEVATDSKPR
                     VWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYGLAASQLQR
                     LRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNRFLKSKY
                     IDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMRPSLDIEQVAT
                     GEHWYGQQAVEKGLVDEINTSDEVILSLMEGREVVNVRYMQRKRLIDRFTGSAAESAD
                     RLLLRWWQRGQKPLM"
     gene            4582..5340
                     /locus_tag="JN125_002061"
     CDS             4582..5340
                     /locus_tag="JN125_002061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciK family oxidoreductase"
                     /protein_id="HAY8871850.1"
                     /translation="MHYQPKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGR
                     NEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIVVNYPRLDGVLHNAGL
                     LGDICPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRA
                     NWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAMRASAFPTEDPQKLKTPA
                     DIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGISQ"
     gene            5337..5928
                     /gene="cobO"
                     /locus_tag="JN125_002062"
                     /pseudo
     CDS             5337..5928
                     /gene="cobO"
                     /locus_tag="JN125_002062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415786.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
     gene            complement(5968..6840)
                     /gene="rluB"
                     /locus_tag="JN125_002063"
     CDS             complement(5968..6840)
                     /gene="rluB"
                     /locus_tag="JN125_002063"
                     /EC_number="5.4.99.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2605) synthase RluB"
                     /protein_id="HAY8871851.1"
                     /translation="MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEV
                     TPGLKIRIDGHLISVRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR
                     WIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGV
                     QLEDGPAAFKIIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDI
                     PLPKGLPRGGWTELDLAQTNYLRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHS
                     QVSGGRRSGGRNNG"
     gene            complement(7051..8946)
                     /locus_tag="JN125_002064"
     CDS             complement(7051..8946)
                     /locus_tag="JN125_002064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2207 domain-containing protein"
                     /protein_id="HAY8871852.1"
                     /translation="MAGKFRCILLLIAGLFVSSLSYAENPEIPSYEEGISLFDVEATL
                     QPDGVLDIKENIHFQARNQQIKHGFYRDLPRLWMQPDGDAALLNYHIVGVTRDGIPEP
                     WHLDWHIGLMSIVVGDKQRFLPQGDYHYQIHYQVKNAFLREGDSDLLIWNVTGNHWPF
                     EIYKTRFSLKFPDIAGNPFSEIDLFTGEEGDTYRNGRILEDGRIESRDPFYREDFTVL
                     YRWPHALLSNAPAPQTTNIFSHLLLPSTSSLLIWFPCLFLVCGWLYLWKRRPQFTPVD
                     VIETDVIPPDYTPGMLRLDAKLVYDDKGFCADIVNLIVKGKIHLEDQYDKNQQILICV
                     NEGATRNNEVLLPAEQLLLEALFRKGDKVVLTGRRNRVLRRAFLRMQKFYLPRKKSLF
                     YRPDTFLQWGGLAILAIILYGNLSPVGWAGMSLVGDMFIMICWIIPFLFCSLELLFAR
                     DDDKPCVNRAIITLFLPLICSGVAFYSLYINVGDVFFYWYMPAGYFSAVCLTGYLTGM
                     GYIFLPKFTQTGQQRYARGEAIVNYLARKEAATHSGRRRKGETRKLDYALLGWAISAN
                     LGREWALRIAPSLSSAIRAPEIARNGVLFSLQTHLSCGANTSLLGRSYSGGGAGGGAG
                     GGGGGGW"
     gene            complement(8974..9594)
                     /locus_tag="JN125_002065"
     CDS             complement(8974..9594)
                     /locus_tag="JN125_002065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HAY8871853.1"
                     /translation="MSQFFYIHPDNPQQRLINQAVEIVRKGGVIVYPTDSGYALGCKI
                     EDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDNVAFRLMKNNTPGNYTFILK
                     GTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLPGSEFTESDPEEI
                     KDRLEKQVDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGDVKPFL"
     gene            complement(9591..10472)
                     /gene="yciV"
                     /locus_tag="JN125_002066"
     CDS             complement(9591..10472)
                     /gene="yciV"
                     /locus_tag="JN125_002066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-3' exoribonuclease"
                     /protein_id="HAY8871854.1"
                     /translation="MSDTNYAVIYDLHSHTTASDGCLTPEALVHRAVEMRVGTLAITD
                     HDTTAAIAPAREEISRSGLALNLIPGVEISTVWENHEIHIVGLNIDITHPLMCEFLAQ
                     QTERRNQRAQQIAERLEKAQIPGALEGAQRLAQGGAVTRGHFARFLVECGKASSMADV
                     FKKYLARGKTGYVSPQWCTIEQAIDVIHHSGGKAVLAHPGRYNLSAKWLKRLVAHFAE
                     HHGDAMEVAQCQQSPNERTQLTTLARQHHLWASQGSDFHQPCPWIELGRKLWLPAGVE
                     GVWQLWEQPQNTTEREL"
     gene            10610..10654
                     /gene="trpL"
                     /locus_tag="JN125_002067"
     CDS             10610..10654
                     /gene="trpL"
                     /locus_tag="JN125_002067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trp operon leader peptide"
                     /protein_id="HAY8871855.1"
                     /translation="MKAIFVLKAWWRTS"
     gene            10746..12308
                     /gene="trpE"
                     /locus_tag="JN125_002068"
     CDS             10746..12308
                     /gene="trpE"
                     /locus_tag="JN125_002068"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HAY8871856.1"
                     /translation="MQTQKPTLELLTCEGAYRDNPTALFHQLCGDRPATLLLESADID
                     SKDDLKSLLLVDSALRITALGDTVTIQALSGNGEALLTLLDNALPAGVENEQSPNCRV
                     LRFPPVSPLLDEDARLCSLSVFDAFRLLQNLLNVPKEEREAMFFGGLFSYDLVAGFED
                     LPQLSAENNCPDFCFYLAETLMVIDHQKKNTRIQASLFAPNEEEKQRLTARLNDLRQQ
                     LTEAAPPLPVVSVPHMRCECNQSDEEFGGVVRLLQKAIRTGEIFQVVPSRRFSLPCPS
                     PLAAYYVLKKSNPSPYMFFMQDNDFTLFGASPESSLKYDATSRQIEIYPIAGTRPRGR
                     RADGSLDRDLDSRIELEMRTDHKELSEHLMLVDLARNDLARICTPGSRYVADLTKVDR
                     YSYVMHLVSRVVGELRHDLDALHAYRACMNMGTLSGAPKVRAMQLIAEAEGRRRGSYG
                     GAVGYFTAHGDLDTCIVIRSALVENGIATVQAGAGIVLDSVPQSEADETRNKARAVLR
                     AIATAHHAQETF"
     gene            12308..13903
                     /gene="trpD"
                     /locus_tag="JN125_002069"
     CDS             12308..13903
                     /gene="trpD"
                     /locus_tag="JN125_002069"
                     /EC_number="2.4.2.18"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional anthranilate synthase glutamate
                     amidotransferase component TrpG/anthranilate
                     phosphoribosyltransferase TrpD"
                     /protein_id="HAY8871857.1"
                     /translation="MADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERL
                     ATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAG
                     EILHGKASSIEHDGQAMFAGLTNPLPVARYHSLVGSNIPAGLTINAHFNGMVMAVRHD
                     ADRVCGFQFHPESILTTQGARLLEQTLAWAQRKLEPTNTLQPILEKLYQAQTLSQQES
                     HQLFSAVVRGELKPEQLAAALVSMKIRGEHPNEIAGAATALLENAAPFPRPDYLFADI
                     VGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNAD
                     KSRQALDELGVCFLFAPKYHTGFRHAMPVRQQLKTRTLFNVLGPLINPAHPPLALIGV
                     YSPELVLPIAETLRVLGYQRAAVVHSGGMDEVSLHAPTIVAELHDGEIKSYQLTAEDF
                     GLTPYHQEQLAGGTPEENRDILTRLLQGKGDAAHEAAVAANVAMLMRLHGHEDLQANA
                     QTVLEVLRSGSAYDRVTALAARG"
     gene            13907..15265
                     /gene="trpCF"
                     /locus_tag="JN125_002070"
     CDS             13907..15265
                     /gene="trpCF"
                     /locus_tag="JN125_002070"
                     /EC_number="4.1.1.48"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309861.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional indole-3-glycerol-phosphate
                     synthase TrpC/phosphoribosylanthranilate isomerase TrpF"
                     /protein_id="HAY8871858.1"
                     /translation="MQTVLAKIVADKAIWVETRKQQQPLASFQNEVQPSTRHFYDALQ
                     GARTAFILECKKASPSKGVIRDDFDPARIAAIYKHYASAISVLTDEKYFQGSFDFLPI
                     VSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGG
                     LTEVSNEEELERAIALGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGIN
                     TYAQVRELSHFANGFLIGSALMAHDDLHAAVRRVLLGENKVCGLTRGQDAKAAYDAGA
                     IYGGLIFVATSPRCVNVEQAQEVMAAAPLQYVGVFRNHDIADVVDKAKVLSLAAVQLH
                     GNEDQLYIDTLREALPAHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSGQRFDWS
                     LLNGQSLGNVLLAGGLGADNCVEAAQTGCAGLDFNSAVESQPGIKDARLLASVFQTLR
                     AY"
     gene            15277..16470
                     /gene="trpB"
                     /locus_tag="JN125_002071"
     CDS             15277..16470
                     /gene="trpB"
                     /locus_tag="JN125_002071"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016158396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HAY8871859.1"
                     /translation="MTTLLNPYFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQ
                     FNDLLKNYAGRPTALTKCQNITAGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMG
                     KTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVH
                     SGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVCEFQRMIGEETKAQILE
                     REGRLPDAVIACVGGGSNAIGMFADFINETNVGLIGVEPGGHGIETGEHGAPLKHGRV
                     GIYFGMKAPMMQTEDGQIEESYSISAGLDFPSVGPQHAYLNSTGRADYVSITDDEALE
                     AFKTLCLHEGIIPALESSHALAHALKMMRETPEKEQLLVVNLSGRGDKDIFTVHDILK
                     ARGEI"
     gene            16470..17276
                     /gene="trpA"
                     /locus_tag="JN125_002072"
     CDS             16470..17276
                     /gene="trpA"
                     /locus_tag="JN125_002072"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HAY8871860.1"
                     /translation="MERYESLFAQLKERKEGAFVPFVTLGDPGIEQSLKIIDTLIEAG
                     ADALELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMY
                     ANLVFNKGIDEFYAQCEKVGVDSVLVADVPVEESAPFRQAALRHNVAPIFICPPNADD
                     DLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPD
                     QVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKVFVQPMKAATSS"
BASE COUNT         4225 a         4674 c         4347 g         4252 t
ORIGIN      
        1 tcattacccg cgaccctttg tttataaaaa cctgacagaa ttaaaggtta tttttttcct
       61 tcaacccatt tgccatcaac ataaaatgct gaccagccag tcgcctttcc gtctttttcc
      121 gaagagacat attgctgttt ggttttacgg ctaaagcgaa ccatggtctt attaccttcc
      181 ggatcctgct gtggcgcatc ggccagataa cgcagttttt ccggcagacg gtcgcggaag
      241 cgataaagct cttccaccag tggcgcacgc gtttcacgcg atttcgggaa agtgttggca
      301 gccaggaaaa cacccgcagc gccgtcacgc agcacgaaat aagcatctga tttttcgcac
      361 ggcagctcag gtaatggcac cggatcttct ttcggtggtg ccacttcgcc gttacgtaaa
      421 atcttacgtg tgtttttaca ctcttcgttg gtgcaggcca tgtatttacc gaaacgcccc
      481 attttcaggt gcatttcaga gccacatttt tcacactcaa cgatcgggcc gtcataacct
      541 ttaatgcgga attcgccctc ttcgatctcg taaccgtcgc aggttgggtt attaccacag
      601 acatgcaact tacgtttcgg atcgatgaga tagctgtcca tcgccgtgcc gcatttcggg
      661 caacgacgtt ttgcgcgcag cgcgttggtt tcagcgtctt cgccttccag tacgttcagc
      721 acttcgtttt ccggcaccag gttaatggtg gttttgcaac gctctttcgg cggcagcgca
      781 taaccagaac agccaaggaa taccccggtg ctcgctgtgc gaatccccat tttgcgacca
      841 caagtcgggc agtcaatgct ggtcagaacc atctggttcg ggcgcatacc accctcttcc
      901 ggatcttttt cagctttatc taactgctgg gtgaaatccg agaagaagtg atccagtaca
      961 gctttccact ctgcttcgtg atttgccacc tggtcgaggc tgttttccat ctgtgcggtg
     1021 aagtcgtagt tcattaactc gcggaaattt tcttcaaggc gatcggtgac gatttcgccc
     1081 attttttccg catagaaacg acgattttct actcgcacgt agccacgatc ctgaatggtc
     1141 gaaatgatcg acgcataggt agacggacga ccgataccgc gtttttccag ctctttaacc
     1201 agcgatgctt cactgaaacg ggctggcggc ttggtaaagt gctgggctgg tgtaagttca
     1261 acgagcgtca gagcatcgcc tttattaact gctggtaaga tgcgatcttc atcgccttta
     1321 cgcaacgcag gcatcacttt tgtccagcca tcaaaacgca aaatacgacc gcgtgctttc
     1381 aggcggaaat cgcccgcacc aacggtcagc gtcgtggagt catatttcgc tggggtcatc
     1441 tggcaggcta cgaactgacg ccagattaac tggtacagtt tctgcgcatc tgcttccata
     1501 tccttcagcg attccgccat cacattgacg tcagaaggac gaatcgcttc gtgcgcttcc
     1561 tgtgagtttt ctttgctggc gtactgattc ggactttccg gcagatattt cttaccaaaa
     1621 ttatcgctga tataaccgcg aaccatattt accgcgtcct gactcaggtt agtggagtcg
     1681 gtacgcatgt aagtgatata gcctgcttca tacaaacgct gcgccatcat catggttttt
     1741 ttcacgccaa atccaagacg ggtgctggca gcttgttgca gcgtagaggt aataaaagga
     1801 gcgccaggtt tagtggttgt cggtttgtct tcacgttcca gcacgctgta gcgcgctttt
     1861 tccagcagac ttaccgcagc ctgagtttgt tctttgttga ccggacggaa cggtttgtcg
     1921 ttctgatgag tcacctgtaa cgccaacgct tcaccagatg gcgtggtcgt gctggcatcg
     1981 acttcccaga actcttccgg cacgaacgct ttaatttcac gctcacgctc gaccaccagg
     2041 cgaaccgcca ccgactgcac acgaccggca gacagaccac gagcgatctt tttccatagc
     2101 agcggcgaaa ccatataccc caccacgcgg tccataaagc gacgcgcctg ctgggcatta
     2161 acacgatcaa tattcagctc acccggtttg ttaaatgcct ggcggatcgc gtttttagta
     2221 atttcgttaa acaccactcg gctatagcgc gcatcatcac ccccaatcac ttcccgcagg
     2281 tgccatgcaa tggcttcccc ttcgcggtca aggtcggttg cgagatagat gtggtcggct
     2341 ttttcagcca gttgtttcag ttcagagacg accttctctt taccaggcaa cacttcatag
     2401 tgcgcctccc aattgtgcca cgggtcaacc cccatacggt tgacgagagc gccacgttca
     2461 tcctttttag gctttttagc cgtcttggtg gaggtagagt cggcactctt tttggcagct
     2521 gagccactgg tcggcaaatc gcggatgtga ccgacgctgg atttcaccac gtagtcacta
     2581 cccagatact tgttgatcgt tttggctttt gccggggact caacgatgac aagagcttta
     2641 cccatattca ccttacctaa tttgattctt ccaggaatgc gtcgcacgtt gataaacctt
     2701 ccactggcaa cgagttaccg atatggactc gttctctgcg gatatcaacc ccttgtcgtg
     2761 actctgttca cgaaaattca ggtgactgag ttaacaggtc ttggcctaca ggcgctatag
     2821 cacgacggaa ttttggtcga atgtcaagca aatctattgc cagattgacg aaagtcgtca
     2881 cactgtacct gataaaatcc gatacgcaac tttattagca tgcaaaatcc aaagttgcca
     2941 gtaaggcgct cttgccacca gcgtggtata tttgtctgca agccatgcct ggcgtagact
     3001 aatgtccttg tttaaggagt aaataatgaa caaagagaca caacccatcg accgcgaaac
     3061 gctgttgaaa gaggccaaca aaatcattcg tgagcatgag gatacgctcg cagggattga
     3121 agccaccggc gtcacgcagc gtaatggcgt gctggtattt accggcgact actttttaga
     3181 tgaacaagga ttgccaacag ccaaaagcac cgcggtgttt aatatgttca aacacctggc
     3241 ccatgtgctt tcagaaaaat atcatctggt tgattaaagc aaaacgcgag gtcttagcct
     3301 cgcgtttgtc ttttacatca atggcttttg accccgctgc caccagcgta gcaacaatcg
     3361 atcggcgctc tctgccgcgc tgccggtgaa tcggtcaatg agtcgtttac gctgcatata
     3421 gcgtacatta accacttcac ggccttccat caggctaaga ataacttcat cactggtgtt
     3481 gatttcatca accaggcctt tctctaccgc ctgttgtccg taccagtgtt cacctgttgc
     3541 cacctgttca atatccagag acggacgcat acgcttcaca aaatctttaa acaactgatg
     3601 cgtttcgttc aactcttcgc ggaatttctc ccgcccttct tcggtatttt cacccagcaa
     3661 cgtcagagta cgcttatact gcccggcagt gtgcagttcg atatcaatat atttgctttt
     3721 caggaagcgg ttaaagttgg gcatttgcgc caccacccca atggaaccca caatagcaaa
     3781 cggtgcggaa acaattttgt ccgccacaca ggccatcatg taaccgccgc tggcagcgac
     3841 tttgtctacc gtaacagtta aaggaatgtt tttatcacgc agacgctgca gctgcgaagc
     3901 cgccaacccg taaccatgca ccatgccacc agggctttcc agacggagca caacctgatc
     3961 ctgcggtttg aatgctgcga gtaccgccgt tatctcttca cgtagcgagt tcacttcatg
     4021 ggcgtccatg ctgcctttaa aatccagcac ccagacgcga ggtttactgt cagttgccac
     4081 ctcgcccagt ttggctttcg cttttgctgc tttcgcttct tgcttgtgct ttttcttctg
     4141 cgctttgtgc cactgttttt gctgatgtga gcccatcagc gccgcggcca gttcttcttt
     4201 catctcctta tactgttcgc tgagattgtt gacccgtaac tcgccacgct ggcgtttatt
     4261 acgttgagca acattgacaa taatggcggc aatcgccgca atcgctagca caacggtaac
     4321 gattttcgcc aaaaacaaac catattcaga caacaattcc acgagtcccc accttggtta
     4381 aacaacgctt tggctcacag tttacaacag gcatgttaag ccgtctcgca gagatgttat
     4441 tgcagcgaaa gtatgacaaa gtatccattt tgcggtgtta tcgccccagg ctgattgaaa
     4501 tgcccttctg tttcaggcat aaagccccaa agtcataaag tacactggca gcgcgacaga
     4561 caacgtcgtt gaggagtagc catgcattac cagccaaaac aagatttact caatgatcgc
     4621 attatcctgg tgacgggagc cagcgatggg attggtcgtg aagccgcgat gacgtatgca
     4681 cgctatggtg cgacagtgat tctgttgggc cgtaatgaag aaaaattacg tcaggtagcc
     4741 agccacataa acgaagaaac tgggcgtcag ccacagtggt ttattctcga tttgctgacc
     4801 tgcacgtccg aaaattgcca acaactggca cagcgcattg tcgttaatta tccgcgtctg
     4861 gatggtgttt tgcataatgc cggattgctc ggcgatattt gcccaatgag cgaacaaaat
     4921 ccgcaggtct ggcaggacgt catgcaggtc aacgttaatg ccacctttat gctcacccag
     4981 gcactgcttc ctttattact caaatcggac gccggttcac tggtctttac ttcatcaagc
     5041 gttggacgtc agggacgagc taactggggt gcatatgcag cgtcgaaatt tgccaccgaa
     5101 gggatgatgc aggtactggc cgatgaatat cagcagcgcc tgcgcgtcaa ctgcattaac
     5161 ccaggcggta cgcgcaccgc aatgcgcgca agcgccttcc cgaccgaaga tccacagaaa
     5221 cttaaaacac ccgctgatat catgccgctc tacctctggc tgatgggcga tgacagccgc
     5281 cgtaaaaccg gcatgacctt tgacgcccaa ccgggccgta aaccaggaat ttcccaatga
     5341 gtgatgaacg ctaccaacag cgtcagcagc gagtgaaaga aaaagtagat gctcgtgtgg
     5401 cccaggcccc aggatgaacg cggtattatc atcgtcttta ccggcaatgg aaaaggcaaa
     5461 accaccgcgg catttggtac ggcaacacgc gcagttggtc acggaaaaaa agtgggcgtc
     5521 gtgcagttta ttaaaggcac ctggcctaat ggcgaacgca atctgctgga accacatggc
     5581 gttgagtttc aggtgatggc aacgggcttt acctgggata cacaaaaccg cgagtctgat
     5641 accgccgcct gccgcgaagt ctggcaacat gcaaagcgga tgcttgctga ttcctcactg
     5701 gatatggttt tgcttgatga actgacgtat atggtggcgt atgactattt gccactggaa
     5761 gaagtggtgc aggcgttaaa tgaacgtcca catcaacaga cggtgattat cacgggtcga
     5821 ggctgtcatc gggatattct tgaactagcg gatacggtaa gtgagctgcg ccccatcaaa
     5881 catgcgtttg atgccggtgt taaggcgcaa atagggattg attattaatc tgtaaaaatg
     5941 ccggatatga cgtccggcat actttgatta accgttatta cgcccgccag aacgacgacc
     6001 gccgctcacc tgactgtgac gtttcaccgc acgacgaatc tgattagcct tcatgcgacg
     6061 acggtctttt tctacagcga ctttagagct ggtttctggc ggaagctcca ccagttcgcg
     6121 cagatagtta gtctgggcga ggtccagctc cgtccagcca ccgcgtggca gaccttttgg
     6181 cagtgggata tcaccgtaac gaacacggat caggcggctc acctgcacac caaccgcttc
     6241 ccacagacga cgaacttcac ggttacggcc ttcggtcaga gtcacgttgt accactggtt
     6301 gatcccttcg ccgccgctga acttgatgat tttaaaagct gccggaccat cttccagttg
     6361 cacgccacga ctcaaatcac gcagtttcgc gtcgtcaacc tgaccaaata cacgcacggc
     6421 gtattcacgt tcaacttcac ggcttggatg cattaaacgg tttgccagtt caccatcggt
     6481 ggtgaacagc agcagaccac aggtgttaac gtccagacga cctacggcaa tccagcgtgc
     6541 gccacgcagc tttggcagac ggtcaaacac cgtcggacgc ccttccggat cgttacgggt
     6601 acacaactca ccttccggtt tgtaataggc cagaacgcga caaatttgtt cagcggactc
     6661 acgtaccgaa atcagatgac catcgatacg aattttcagc ccaggggtaa cttcaacgcg
     6721 atcgccgagt ttagcaattt tgccatcaac actcacacga ccggcttcaa taatagattc
     6781 gatttcacgg cgggagccgt ggccagcgcg ggccagcact ttctgtaatt tttcgctcat
     6841 agagcttcct tttggtgtcg ccttcccagg cgtctgatat gcttttgtgc aacagtgagt
     6901 cagaacttac atctgactca ctgatagtaa agtctgtttg aactcttcag gccttaagta
     6961 aacgactcga cgtttatcgg cctggctttg aggcgcaaca tactacacta tctttatggt
     7021 taaagcttgt ttcgattaac atcagcttaa ttaccagcca ccaccgcctc cgccacccgc
     7081 gccgccgcca gcaccaccac cggaataact tcgccccaac aaactggtat tggccccgca
     7141 acttaggtgc gtctgtaatg agaataaaac gccgttacgg gcaatctctg gagcgcgaat
     7201 cgccgaagaa agcgaagggg caatgcgtaa cgcccattcc ctccccaaat ttgccgatat
     7261 agcccaacct agcaacgcgt aatccagttt ccgtgtttcc cctttccgcc gacgtccact
     7321 gtgtgttgct gcctctttac gcgcaagata gttaacgata gcttcaccgc gggcataacg
     7381 ttgctgccca gtttgggtaa actttggcag aaaaatatac cccatgccag tgagataacc
     7441 ggtcaggcaa acagcgctaa aataacccgc tggcatatac cagtaaaaga atacatctcc
     7501 gacattgata tagagagaat agaaggccac gcctgaacaa atcagtggta aaaacaaagt
     7561 gatgattgca cgattaacgc aaggcttgtc atcatcgcgg gcaaacaaaa gctcaaggga
     7621 acaaaataaa aaaggaataa tccagcagat cataataaac atatcgccta ccagactcat
     7681 tcctgcccaa cctacgggac tcaggttacc gtagagaatg atcgccaata ttgccagtcc
     7741 accccattgc aaaaacgtat caggccggta aaacaaagac tttttacgcg gcagataaaa
     7801 tttctgcatc cgtaaaaatg ccctgcgtaa gactctgttg cgtctccccg taagaacgac
     7861 cttatcgcct ttacgaaata acgcttccag taataactgc tctgcgggca gtaatacctc
     7921 attatttctg gtcgcgcctt cattaacaca aatcaggatt tgctggttct tatcatactg
     7981 atcttccaga tgaatttttc ccttcacgat cagatttacg atatcggcac agaaaccttt
     8041 atcgtcgtaa accagcttcg catcgagacg taacatgccg ggcgtgtaat ctggcggaat
     8101 gacatcggtt tcaatcacat ctaccggcgt aaattgcggc ctgcgcttcc agagatataa
     8161 ccatccacaa accaggaata gacacggaaa ccaaattaac aacgatgacg tggagggtaa
     8221 aagaagatgg ctgaaaatat tcgtcgtttg tggagccggg gcattgctaa gtaacgcgtg
     8281 aggccagcgg tagagtaccg tgaaatcttc tcgataaaac ggatcgcggg attcaattct
     8341 tccgtcctca aggatgcggc catttcgata tgtgtcgccc tcttctccag taaagagatc
     8401 gatttcgcta aatggattac ccgcgatatc agggaacttg agtgaaaatc gggtcttata
     8461 gatttcaaac ggccagtggt taccagtcac gttccagatt aacagatctg aatctccctc
     8521 acgcaggaaa gcatttttaa cctgataatg aatttgataa tgatagtcgc cttgaggcaa
     8581 gaaacgttgt ttatcgccca cgacaatact cattaacccg atatgccagt caagatgcca
     8641 gggttcagga ataccatcac gagtgacgcc aacaatatga tagttcagca gtgcagcgtc
     8701 cccatcaggc tgcatccaga gtcgtggtaa atcacgataa aatccgtgct taatctgctg
     8761 atttcgcgcc tgaaaatgaa tattttcttt gatgtcgagc accccatccg gttgcagagt
     8821 ggcttcaaca tcaaagagcg agatcccttc ttcataagaa gggatctccg ggttttctgc
     8881 ataacttaga gatgatacaa acagccctgc tatcaacagc aaaatgcagc gaaacttccc
     8941 tgccatagtc ttccatccgt ggaacgcaat ttgttataag aaaggcttca catcacccac
     9001 gccttcacgc accacgaccg gcgtatcatc ggtaagatca atgaccgttg tcggtttctg
     9061 tccgagatag ccgccgtgga taatcaaatc cacctgtttt tccagacggt ctttaatttc
     9121 ttctggatcg gattcggtaa attcgctgcc tggcagcatt agcgaagtgg aaagcatcgg
     9181 ttcgcccagt gcttcaagca acgcctgcgc aatcgggtta gaaggcacac gcataccgat
     9241 ggttttgcgt ttttcctgca acagacggcg tggcacctcc ttcgtcccct tcaggatgaa
     9301 ggtatagttg cccggcgtgt tgtttttcat taaacgaaac gcaacgttat ccacgaatga
     9361 ataggtcgaa agttcagaaa gatcgcgaca catcagggta aagttgtgac cgtccggcag
     9421 ctggcgaata cgacaaatac gctccatcgc gtttttatct tcaattttac agccgagcgc
     9481 atagccggaa tcagttggat aaacaatcac cccgccttta cgcacgatct ccaccgcctg
     9541 gttgatcaga cgttgctgcg ggttatcagg atgaatataa aaaaactggc tcataattcc
     9601 ctctctgtgg tgttctgcgg ctgttcccat agctgccaga cgccttcaac gcctgcgggc
     9661 agccagagtt tacgacccag ttcgatccac gggcatggct gatgaaaatc agatccttgt
     9721 gatgcccata aatgatgctg acgcgcaagt gtcgtcaact gggtgcgttc attgggcgat
     9781 tgctggcact gcgcgacttc catcgcgtcg ccgtggtgtt cggcaaaatg cgcaaccaat
     9841 cttttcagcc atttagcact aagattgtac cgcccaggat gagctagcac cgccttaccg
     9901 ccagaatgat gaatgacatc aatagcttgt tctattgtac accactgtgg cgaaacgtat
     9961 ccggttttcc cgcgcgccag atacttttta aagacatctg ccattgaact ggctttgccg
    10021 cactcaacaa ggaaacgcgc aaaatgaccg cgcgtcactg cgccgccctg cgccagtcgt
    10081 tgtgcgcctt ccagcgcccc aggtatttgc gctttttcaa gtctttcggc aatttgctgc
    10141 gcccgctgat tgcgccgttc tgtctgctgc gcgaggaact cacacattag cggatgagta
    10201 atatcaatat tcagcccgac aatatgaatt tcatgatttt cccagaccgt ggaaatttcc
    10261 acgccgggaa taagattcag cgccagtccc gaacgtgaaa tttcctctct tgctggcgcg
    10321 attgcagctg tggtgtcatg gtcggtgatc gccagggtgc cgacgcgcat ctcgactgca
    10381 cggtgcacca atgcttctgg cgtcaggcag ccatcggaag ctgtggtatg gctgtgcagg
    10441 tcgtaaatca ctgcgtaatt cgtgtcgctc aaggcgcact cccgttctgg ataatgtttt
    10501 ttgcgccgac atcataacgg ttctggcaaa tattctgaaa tcagctgttg acaattaatc
    10561 atcgaactag ttaactagta cgcaagttca cgtaaaaagg gtatcgacaa tgaaagcaat
    10621 tttcgtactg aaagcttggt ggcgcacttc ctgaaacggg cagtgtattc accatgcgta
    10681 aagcaatcag atacccagcc cgcctaatga gcgggctttt ttttgaacaa aattagagaa
    10741 taacaatgca aacacaaaaa ccgactctcg aactgctaac ctgcgaaggc gcttatcgcg
    10801 acaacccgac tgcgcttttt caccagttgt gtggggatcg tccggcaacg ctgctgctgg
    10861 aatccgcaga tatcgacagc aaagatgatt taaaaagcct gctactggta gacagtgcgc
    10921 tgcgcattac agcattaggt gacactgtca caattcaggc actttccggc aacggcgaag
    10981 ccctgctgac actactggat aacgccctgc ctgcgggtgt ggaaaatgaa caatcaccaa
    11041 actgccgtgt gctgcgcttc ccccctgtca gtccactgct ggatgaagac gctcgcttat
    11101 gctccctttc ggtttttgac gctttccgtt tattgcagaa tctgttgaat gtaccgaagg
    11161 aagaacgaga agcaatgttc ttcggcggcc tgttctctta tgaccttgtg gcgggatttg
    11221 aagatttacc gcaactgtca gcggaaaata actgccctga tttctgtttt tatctcgctg
    11281 aaacgctgat ggtgattgac catcagaaaa aaaacacccg cattcaggcc agcctgtttg
    11341 ctccgaatga agaagaaaaa caacgtctca ctgctcgcct gaacgatctt cgccagcagc
    11401 tgaccgaagc cgcgccgccg ctgccggtgg tttccgtgcc gcatatgcgt tgtgaatgta
    11461 accagagcga tgaagagttc ggtggcgtgg tgcgtttgtt gcaaaaagcg attcgcaccg
    11521 gagaaatttt ccaggtggtg ccgtctcgcc gtttctctct gccctgcccg tcaccgctgg
    11581 cggcctatta cgtgctgaaa aagagtaatc ccagcccgta catgtttttt atgcaggata
    11641 atgatttcac cctgtttggc gcgtcgccgg aaagttcgct caagtatgac gccaccagcc
    11701 gccagattga gatctacccg attgccggaa cacgcccgcg cggtcgtcgc gccgatggtt
    11761 cactggacag agacctcgac agccgcatcg aactggaaat gcgtaccgat cataaagagc
    11821 tttctgaaca tctgatgctg gtggatctcg cccgtaatga tctggcacgc atttgcaccc
    11881 ccggcagccg ctacgtcgcc gatcttacca aagttgaccg ttactcttac gtgatgcacc
    11941 tggtctcccg cgtggtcggt gagctgcgcc acgatctcga cgccctgcac gcttaccgcg
    12001 cctgtatgaa tatggggacg ttaagcggtg cgccgaaagt acgcgccatg cagttaattg
    12061 ccgaggcgga aggtcgtcgc cgcggcagct acggcggcgc ggtaggttat ttcaccgcgc
    12121 atggcgatct cgacacctgc attgtgatcc gctcagcgct ggtggaaaac ggtatcgcca
    12181 ccgtgcaagc cggtgctggc atagtccttg attctgttcc gcagtcggaa gccgacgaaa
    12241 cccgtaataa agcccgcgct gtactgcgcg ctattgccac cgcgcatcat gcacaggaaa
    12301 ctttctgatg gctgacattc tgctgctcga taatatcgac tcttttacgt acaacctggc
    12361 agatcagttg cgcagcaatg ggcataatgt ggtgatttac cgcaaccata ttccggcgca
    12421 gaccttaatt gaacgcctgg cgacgatgag caatccggtg ctgatgcttt ctcctggccc
    12481 cggtgtgccg agcgaagccg gttgtatgcc ggaactcctc acccgcttgc gtggcaagct
    12541 gcccattatt ggcatttgcc tcggacatca ggcgattgtc gaagcttacg ggggctatgt
    12601 cggtcaggcg ggcgaaattc tccacggtaa agcctccagc attgaacacg acggtcaggc
    12661 gatgtttgcc ggattaacaa acccgctacc agtggcgcgt tatcactcgc tggttggcag
    12721 taacattccg gccggtttaa ccatcaacgc ccattttaat ggcatggtga tggcagtacg
    12781 tcacgatgcg gatcgcgttt gtggattcca gttccatccg gaatccattc ttactaccca
    12841 gggcgctcgc ctgctggaac aaacgctggc ctgggcgcag cggaaactag agccaaccaa
    12901 cacgctgcaa ccgattctgg aaaaactgta tcaggcgcag acgcttagcc agcaagaaag
    12961 ccaccagctg ttttcagcag tggtacgtgg cgaactgaaa ccggaacaac tggcggcggc
    13021 gctggtgagc atgaaaattc gcggcgagca cccgaacgag atcgccggag cagcaaccgc
    13081 gttactggaa aacgccgcgc cgttcccgcg cccggattat ctgtttgccg atatcgtcgg
    13141 caccggtggt gacggcagta acagcatcaa tatttccacc gccagtgcgt ttgtcgccgc
    13201 ggcctgtggg ctgaaagtgg cgaaacacgg caaccgtagc gtctccagta aatctggttc
    13261 gtccgatctg ctggcggcgt tcggtattaa tcttgatatg aatgccgata aatcgcgcca
    13321 agcgctggat gagttaggcg tatgtttcct ctttgcgccg aaatatcaca ccggatttcg
    13381 ccatgcgatg ccggttcgcc agcaactgaa aacccgcact ctgttcaacg tgctgggacc
    13441 attgattaac ccggcgcatc cgccgctggc gttaattggt gtttatagtc cggaactggt
    13501 gctgccgatt gccgaaacct tgcgcgtgct ggggtatcaa cgcgcggcgg tagtgcacag
    13561 cggcggtatg gatgaagttt cattacacgc gccgacaatc gttgccgaac tgcatgacgg
    13621 tgaaattaag agctatcagc taactgcaga agattttggc ctgacaccct accaccagga
    13681 gcaactggca ggcggaacac cggaagaaaa ccgtgacatt ttaacacgct tgttacaagg
    13741 taaaggcgac gccgctcacg aagcagccgt cgcggcgaat gtcgccatgt taatgcgcct
    13801 gcatggccat gaagatctgc aagccaatgc gcaaaccgtt cttgaggtac tgcgcagtgg
    13861 ttccgcttac gacagagtta ccgcactggc ggcacgaggg taaatgatgc aaaccgtttt
    13921 agcgaaaatc gtcgcagaca aggcgatttg ggtagaaacc cgcaaacagc agcaaccgct
    13981 ggccagtttt cagaatgagg ttcagccgag cacgcgacat ttttatgatg cgctacaggg
    14041 tgcacgcacg gcgtttattc tggagtgcaa gaaagcgtcg ccgtcaaaag gcgtgatccg
    14101 tgatgatttc gatccggcac gcattgccgc catttataaa cattacgctt cggcaatttc
    14161 ggtgctgact gatgagaaat attttcaggg gagctttgat ttcctcccca tcgtcagcca
    14221 aatcgccccg cagccgattt tatgtaaaga cttcattatc gacccttacc agatctatct
    14281 ggcgcgctat taccaggccg atgcctgctt attaatgctt tcagtactgg atgacgacca
    14341 atatcgccag cttgcagccg tcgctcacag tctggagatg ggggggctga ccgaagtcag
    14401 taatgaagag gaactggagc gcgccattgc attaggggca aaggtcgttg gcatcaacaa
    14461 ccgcgatctg cgtgatttgt cgattgatct caaccgtacc cgcgagcttg cgccgaaact
    14521 ggggcacaac gtaacggtaa tcagcgaatc cggcatcaat acttacgctc aggtgcgcga
    14581 gttaagccac ttcgctaacg gttttctgat tggttcggcg ttgatggccc atgacgattt
    14641 gcacgccgcc gtgcgccggg tgttgctggg tgagaataaa gtatgtggcc tgacgcgtgg
    14701 gcaagatgct aaagcagctt atgacgcggg cgcgatttac ggtgggttga tttttgtcgc
    14761 gacatcaccg cgttgcgtca acgttgaaca ggcgcaggaa gtgatggctg cggcaccgtt
    14821 gcagtatgtt ggcgtgttcc gcaatcacga tattgccgat gtggtggaca aagctaaggt
    14881 gttatcgctg gcggcagtgc aactgcatgg taatgaagat cagctgtata tcgatacgct
    14941 gcgtgaagct ctgccagcac atgttgccat ctggaaagca ttaagcgtcg gtgaaaccct
    15001 gcccgcccgc gagtttcagc acgttgataa atatgtttta gacaacggcc agggtggaag
    15061 cgggcaacgt tttgactggt cactattaaa tggtcaatcg cttggcaacg ttctgctggc
    15121 ggggggctta ggcgcagata actgcgtgga agcggcacaa accggctgcg ccggacttga
    15181 ttttaattct gctgtagagt cgcaaccggg catcaaagac gcacgtcttt tggcctcggt
    15241 tttccagacg ctgcgcgcat attaaggaaa ggaacaatga caacattact taacccctat
    15301 tttggtgagt ttggcggcat gtacgtgcca caaatcctga tgcctgctct gcgccagctg
    15361 gaagaagctt ttgtcagcgc gcaaaaagat cctgaatttc aggctcagtt caacgacctg
    15421 ctgaaaaact atgccgggcg tccaaccgcg ctgaccaaat gccagaacat tacggctggg
    15481 acgaacacca cgctgtatct gaagcgcgaa gatttgctgc acggcggcgc gcataaaact
    15541 aaccaggtgc tcggtcaggc tttactggcg aagcggatgg gtaaaaccga aatcatcgcc
    15601 gaaaccggtg ccggtcagca tggcgtggcg tcggcccttg ccagcgccct gctcggcctg
    15661 aaatgccgta tttatatggg tgccaaagac gttgaacgcc agtcgcctaa cgtttttcgt
    15721 atgcgcttaa tgggtgcgga agtgatcccg gtacatagcg gttccgcgac gctgaaagat
    15781 gcctgtaacg aggcgctgcg cgactggtcc ggcagttatg aaaccgcgca ctatatgctg
    15841 ggcaccgcag ctggcccaca tccttatccg accattgtgt gtgagtttca gcggatgatt
    15901 ggcgaagaaa cgaaagcgca gattctggaa agagaaggtc gcctgccgga tgccgttatc
    15961 gcctgtgttg gcggcggttc gaatgccatc ggcatgtttg cagatttcat caacgaaacc
    16021 aacgtcggcc tgattggtgt ggagccgggt ggtcacggta tcgaaactgg cgagcacggc
    16081 gcaccgctaa aacatggtcg cgtgggcatt tatttcggta tgaaagcgcc gatgatgcaa
    16141 accgaagacg ggcagattga agaatcttac tccatctccg ccggactgga tttcccgtct
    16201 gtcggcccac aacacgcgta tcttaacagc actggacgcg ctgattacgt gtctattacc
    16261 gatgatgaag cccttgaagc cttcaaaacg ctgtgcctgc acgaagggat tatcccggcg
    16321 ctggagtctt cccacgccct ggcccatgcg ctgaaaatga tgcgcgaaac cccggaaaaa
    16381 gagcagctac tggtggttaa cctttccggt cgcggcgata aagacatctt caccgttcac
    16441 gatattttga aagcacgagg ggaaatctga tggaacgcta cgaatctctg tttgcccagt
    16501 tgaaggagcg caaagaaggc gcattcgttc ctttcgtcac gctcggggat ccgggcattg
    16561 agcagtcatt gaaaattatc gatacgctaa ttgaagccgg tgctgacgcg ctggagttag
    16621 gtatcccctt ctccgaccca ctggcggatg gcccgaccat tcaaaacgcc actctgcgcg
    16681 cctttgcggc aggtgtgact ccggcacaat gttttgaaat gctggcactg attcgccaga
    16741 aacacccgac cattcccatt ggcctgttga tgtatgccaa tctggtgttt aacaaaggca
    16801 ttgatgagtt ttatgcccag tgcgagaaag tcggcgtcga ttcggtgctg gttgccgatg
    16861 tgccagttga agagtccgcg cccttccgcc aggccgcgtt gcgccataat gtcgcaccta
    16921 tcttcatctg cccgccaaat gccgatgacg acctgctgcg ccagatagcc tcttacggtc
    16981 gtggttacac ctatttgctg tcacgagcgg gcgtgaccgg cgcagaaaac cgcgccgcgt
    17041 tacccctcaa tcatctggtt gcgaagctga aagagtacaa cgctgcacct ccattgcagg
    17101 ggtttggtat ttccgccccg gatcaggtaa aagcagcgat tgatgcagga gctgcgggcg
    17161 cgatttctgg ttcggccatt gttaaaatca tcgagcaaca tattaatgag ccagagaaaa
    17221 tgctggcggc actgaaagtt tttgtacaac cgatgaaagc ggcgacgagc agttaatccc
    17281 acagtcgcca gttccgttgg cggcatttta actttcttta atgaagccgg aaaaatccta
    17341 aattcattta atatttatct ttttaccgct tcgcttaccc ctgtcgaacg tcaacttacg
    17401 tcatttttcc gtccaacagt aatataatca aacaaattaa tcccgcaaca taacaccagt
    17461 aaaatcaata attttctcta agtcacttat tcctcaga
//
LOCUS       DADMHM010000070        16904 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.071, whole genome shotgun sequence.
ACCESSION   DADMHM010000070 DADMHM010000000
VERSION     DADMHM010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16904)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16904)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16904
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.071"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..384)
                     /locus_tag="JN125_002073"
     CDS             complement(<1..384)
                     /locus_tag="JN125_002073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HAY8871861.1"
                     /translation="MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLVLFSLAGKNLLDI
                     QTAAFCLVCLLWPTAAVTVKRLHDRGRSGAWAFLMIVAWMLLAGNWAILPGVWQWAVG
                     CFVPTLILVMMLIDLGAFVGTQGENK"
     gene            485..1084
                     /locus_tag="JN125_002074"
     CDS             485..1084
                     /locus_tag="JN125_002074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiQ family protein"
                     /protein_id="HAY8871862.1"
                     /translation="MKPGCTLFFLLCSALTVTTTAHAQTPDTATTAPYLLAGAPTFDL
                     SISQFREDFNSQNPSLPLNEFRAIDSSPDKANLTRAASKINENLYASTALERGTLKIK
                     SIQMTWLPIQGPEQKAAKAKAQEYMAAVIRTLTPLMTKTQSQKKLQSLLTAGKNKRYY
                     TETEGALRYVVADNGEKGLTFAVEPIKLALSESLEGLNK"
     gene            1192..1959
                     /gene="tpiA"
                     /locus_tag="JN125_002075"
     CDS             1192..1959
                     /gene="tpiA"
                     /locus_tag="JN125_002075"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HAY8871863.1"
                     /translation="MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPE
                     MYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYH
                     KESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFE
                     GAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNA
                     AELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA"
     gene            complement(2014..2769)
                     /gene="cdh"
                     /locus_tag="JN125_002076"
     CDS             complement(2014..2769)
                     /gene="cdh"
                     /locus_tag="JN125_002076"
                     /EC_number="3.6.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol diphosphatase"
                     /protein_id="HAY8871864.1"
                     /translation="MKKAGLLFLVMIVIAVVAAGIGYWKLTGEESDTLRKIVLEECLP
                     NQQQNQNPSPCAEVKPNAGYVVLKDLNGPLQYLLMPTYRINGTESPLLTDPSTPNFFW
                     LAWQARDFMSKKYGQPVPDRAVSLAINSRTGRTQNHFHIHISCIRPDVREQLDNNLAN
                     ISSRWLPLPGGLRGHEYLARRVTESELVQRSPFMMLAEEVPEAREHMGSYGLAMVRQS
                     DNSFVLLATQRNLLTLNRASAEEIQDHQCEILR"
     gene            complement(2875..3864)
                     /locus_tag="JN125_002077"
     CDS             complement(2875..3864)
                     /locus_tag="JN125_002077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY8871865.1"
                     /translation="MNKWGVGLTFLLAATSVMAKDIQLLNVSYDPTRELYEQYNKAFS
                     AHWKQQTGDNVVMRQSHGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKEWI
                     KRLPDNSAPYTSTIVFLVRKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAW
                     GYALHHNNNDQAKAQDFVRALYKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLA
                     ANELGKDKFEIVTPSESILAEPTVSVVDKVVEKKGTKEVAEAYLKYLYSPEGQEIAAK
                     NYYRPRDAEVAKKYENAFPKLKLFTIDEEFGGWTKAQKEHFANGGTFDQISKR"
     gene            complement(4184..5146)
                     /gene="pfkA"
                     /locus_tag="JN125_002078"
     CDS             complement(4184..5146)
                     /gene="pfkA"
                     /locus_tag="JN125_002078"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HAY8871866.1"
                     /translation="MIKKIGVLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLG
                     LYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIG
                     GDGSYMGAMRLTEMGFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSS
                     HQRISVVEVMGRYCGDLTLAAAIAGGCEFVVVPEVEFSREDLVNEIKAGIAKGKKHAI
                     VAITEHMCDVDELAHFIEKETGRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLL
                     LAGYGGRCVGIQNEQLVHHDIIDAIENMKRPFKGDWLDCAKKLY"
     gene            complement(5327..6229)
                     /gene="fieF"
                     /locus_tag="JN125_002079"
     CDS             complement(5327..6229)
                     /gene="fieF"
                     /locus_tag="JN125_002079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312867.1"
                     /note="FieF, a metal efflux transporter, is a member of
                     the CDF (cation diffusion facilitator) family of
                     transporters; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter FieF"
                     /protein_id="HAY8871867.1"
                     /translation="MNQSYGRLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALV
                     DSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGI
                     QHLISPTPMIDPGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMM
                     NGAILLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEI
                     IDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFP
                     GSDVIIHQDPCSVVPREGKRSMLS"
     gene            complement(6379..6891)
                     /gene="cpxP"
                     /locus_tag="JN125_002080"
     CDS             complement(6379..6891)
                     /gene="cpxP"
                     /locus_tag="JN125_002080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell-envelope stress modulator CpxP"
                     /protein_id="HAY8871868.1"
                     /translation="MRIVTAAVMASTLAVSSLSHAAEVGSGDNWHPGEELTQRRTQRS
                     TQSHMFDGISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVTAENFDENAVRAQ
                     AEKMANEQIARQVEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVTQWQKSSSLK
                     LLSSSNSRSQ"
     gene            7041..7739
                     /gene="cpxR"
                     /locus_tag="JN125_002081"
     CDS             7041..7739
                     /gene="cpxR"
                     /locus_tag="JN125_002081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001033718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response regulator transcription
                     factor CpxR"
                     /protein_id="HAY8871869.1"
                     /translation="MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS
                     IDLLLLDVMMPKKNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPF
                     NDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGT
                     EFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWF
                     KTLRGRGYLMVSAS"
     gene            7736..9109
                     /gene="cpxA"
                     /locus_tag="JN125_002082"
     CDS             7736..9109
                     /gene="cpxA"
                     /locus_tag="JN125_002082"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress sensor histidine kinase CpxA"
                     /protein_id="HAY8871870.1"
                     /translation="MIGSLTARIFAIFWLTLALVLMLVLMLPKLDSRQMTELLDSEQR
                     QGLMIEQHVEAELANDPPNDLMWWRRLFRAIDKWAPPGQRLLLVTTEGRVIGAERSEM
                     QIIRNFIGQADNADHPQKKKYGRVELVGPFSVRDGEDNYQLYLIRPASSSQSDFINLL
                     FDRPLLLLIVTMLVSTPLLLWLAWSLAKPARKLKNAADEVAQGNLRQHPELEAGPQEF
                     LAAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLGTALLRRRSGESKELER
                     IETEAQRLDSMINDLLVMSRNQQKNALVSETIKANQLWSEVLDNAAFEAEQMGKSLTV
                     NFPPGPWPLYGNPNALESALENIVRNALRYSHTKIEVGFAVDKDGITITVDDDGPGVS
                     PEDREQIFRPFYRTDEARDRESGGTGLGLAIVETAIQQHRGWVKAEDSPLGGLRLVIW
                     LPLYKRS"
     gene            complement(9215..9889)
                     /gene="yiiM"
                     /locus_tag="JN125_002083"
     CDS             complement(9215..9889)
                     /gene="yiiM"
                     /locus_tag="JN125_002083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418346.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-N-hydroxylaminopurine resistance protein"
                     /protein_id="HAY8871871.1"
                     /translation="MRYPVDVYTGKIQAYPEGKPSAIAKIQVDGELMLTELGLEGDEQ
                     AEKKVHGGPDRALCHYPREHYLYWAREFPEQAELFVAPAFGENLSTDGLTESNVYMGD
                     IFRWGEALIQVSQPRSPCYKLNYHFDISDIAQLMQNTGKVGWLYSVIAPGKVSADAPL
                     ELVSRVSDVTVQEAAAIAWHMPFDDDQYHRLLSAAGLSKSWTRTMQKRRLSGKIEDFP
                     RRLWGK"
     gene            complement(10038..10949)
                     /gene="kdgT"
                     /locus_tag="JN125_002084"
     CDS             complement(10038..10949)
                     /gene="kdgT"
                     /locus_tag="JN125_002084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709713.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-keto-3-deoxygluconate transporter"
                     /protein_id="HAY8871872.1"
                     /translation="MQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMI
                     TGTVSILAVWFFCMGASIKLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVE
                     VGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGT
                     AGIASFEPHVFVGAVLPFLVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTV
                     IAQTGLLGILLGVAVIIVTGIPLIIADKLIGGGDGTAGIAASSSAGAAVATAVIVTSI
                     LVPILTSIWSRKVKARAAKIEILGTVK"
     gene            complement(11209..11829)
                     /gene="sodA"
                     /locus_tag="JN125_002085"
     CDS             complement(11209..11829)
                     /gene="sodA"
                     /locus_tag="JN125_002085"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010345169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Mn]"
                     /protein_id="HAY8871873.1"
                     /translation="MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALE
                     SLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA
                     IERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGDKLAVVSTANQDSPLMGEAISGAS
                     GFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAAARFAAKK"
     gene            12113..13147
                     /gene="rhaT"
                     /locus_tag="JN125_002086"
     CDS             12113..13147
                     /gene="rhaT"
                     /locus_tag="JN125_002086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose/proton symporter RhaT"
                     /protein_id="HAY8871874.1"
                     /translation="MSNAITMGIFWHLIGAASAACFYAPFKKVKKWSWETMWSVGGIV
                     SWIILPWAISALLLPNFWAYYSSFSLSTLLPVFLFGAMWGIGNINYGLTMRYLGMSMG
                     IGIAIGITLIVGTLMTPIINGNFDVLLNTEGGRMTLLGVLVALIGVGIVTRAGQLKER
                     KMGIKAEEFNLKKGLVLAVMCGIFSAGMSFAMNAAKPMHEAAAALGVDPLYVALPSYV
                     IIMGGGAIINLGFCFIRLAKVKDLSLKADFSLAKPLIIHNVLLSALGGLMWYLQFFFY
                     AWGHARIPAQYDYISWMLHMSFYVLCGGIVGLVLKEWNNAGRRPVTVLSLGCVVIIVA
                     ANIVGIGMAN"
     gene            complement(13144..14082)
                     /gene="rhaR"
                     /locus_tag="JN125_002087"
     CDS             complement(13144..14082)
                     /gene="rhaR"
                     /locus_tag="JN125_002087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709710.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator RhaR"
                     /protein_id="HAY8871875.1"
                     /translation="MAFCNNANLLNVFVRHIANNQLRSLAEVATVAHQLKLLKDDFFA
                     SDQQAVAVADRYPQDVFAEHTHDFCELVIVWRGNGLHVLNDRPYRITRGDLFYIHADD
                     KHSYASVNDLVLQNIIYCPERLKLNLDWQGAIPGFSASAGQPHWRLGSVGMAQARQVI
                     GQLEHESSQHVSFANEMAELLFGQLVMLLNRHRYTSDSLPPTSSETLLDKLITRLAAS
                     LKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLLQHSRLLISD
                     ISTECGFEDSNYFSVVFTRETGMTPSQWRHLNSQKD"
     gene            complement(14066..14902)
                     /gene="rhaS"
                     /locus_tag="JN125_002088"
     CDS             complement(14066..14902)
                     /gene="rhaS"
                     /locus_tag="JN125_002088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator RhaS"
                     /protein_id="HAY8871876.1"
                     /translation="MTVLHSVDFFPSGNASVAIEPRLPQADFPEHHHDFHEIVIVEHG
                     TGIHVFNGQPYTITGGTVCFVRDHDRHLYEHTDNLCLTNVLYRSPDRFQFLAGLNQLL
                     PQELDGQYPSHWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKS
                     SLQENLENSASRLNLLLAWLEDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQR
                     YLNRLRLMKARHLLRHSEASVTDIAYRCGFSDSNHFSTLFHREFNWSPRDIRQGRDGF
                     LQ"
     gene            15190..16605
                     /gene="rhaB"
                     /locus_tag="JN125_002089"
     CDS             15190..16605
                     /gene="rhaB"
                     /locus_tag="JN125_002089"
                     /EC_number="2.7.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnulokinase"
                     /protein_id="HAY8871877.1"
                     /translation="MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIHHFNNGLHS
                     QNGYVTWNVDSLESAIRLELNKVCEEGIRIDSIGIDTWGVDFVLLDQQGQRVGLPVAY
                     RDSRSNGLMAQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLM
                     PDYFSYRLTGKMNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIG
                     HWICPQGNEIPVVAVASHDTASAVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTA
                     LAANITNEGGAEGRYRVLKNIMGLWLLQRVLQERQINDLPAHFLSHCERIKATNGKDR
                     VIMHCHATNLIALTYVLENDTAVFTRQLWEGSTECLVVFPDGVGILPWMVPGTDEIGQ
                     ATAQEMQKHSLVLWPFHGVFGSGSTLDETFGLIDTAEKSAQVLVKVYSMGGMKQTISR
                     EELIALGKRFGVTPLASALAL"
     gene            16615..>16904
                     /gene="rhaM"
                     /locus_tag="JN125_002090"
     CDS             16615..>16904
                     /gene="rhaM"
                     /locus_tag="JN125_002090"
                     /EC_number="5.1.3.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose mutarotase"
                     /protein_id="HAY8871878.1"
                     /translation="MIRKAFVMQVNPDAHEEYQRRHNPIWPELEAVLKSHGAHNYAIY
                     LDKARNLLFATVEIESEERWNAVASTDVCQRWWKYMTDVMPANPDNSPVSSEL"
BASE COUNT         4232 a         4420 c         4224 g         4028 t
ORIGIN      
        1 tttattttcg ccttgtgtgc caacaaacgc accaagatcg ataagcatca tcaccagaat
       61 caacgtcggg acaaaacacc ccaccgccca ttgccagaca cccggtaaaa tcgcccagtt
      121 acccgccagc agcatccacg ccacaatcat cagaaatgcc catgcgccgg aacgcccgcg
      181 atcatgcaag cgcttaacag ttactgccgc tgttggccaa agcaagcaca caaggcaaaa
      241 cgccgcggtc tgaatatcga gtaaattttt acccgccagt gagaaaagca ccagcatgcc
      301 tgcgaaccac aggcctatcc aaatccagaa atcacggcgt ccaatacgcc ctttaaatga
      361 gaataaccat tgctgtatgg tcatgtaagt tccttgatgg ttgtcttttc caggattcta
      421 cccttttgac aagggcgaca gatatcgttt taatcggagc cagtcataac aaaaggtact
      481 gtcaatgaag ccagggtgta cgctgttttt tctcttatgt tctgcattaa ccgttacaac
      541 aacggcgcat gcacaaacac cagatacggc aacgaccgcg ccttatctgc tggctggagc
      601 ccctactttc gatctctcca tcagccagtt tcgagaagac tttaacagcc agaatcctag
      661 cctgccactg aacgaatttc gtgccatcga cagcagtccc gacaaagcca atctcactcg
      721 tgctgcaagt aaaattaacg agaacttgta tgcttctaca gcgctggagc gcggtacctt
      781 aaaaatcaaa agcattcaaa tgacctggct acccatccag gggccagagc aaaaagcagc
      841 gaaagcgaaa gctcaggaat acatggcagc agtgatccgc acactcaccc cattaatgac
      901 caaaacacaa agccagaaaa aactgcagtc gctgctaacg gcggggaaaa acaaacgtta
      961 ttacaccgag acagaaggtg cactgcgtta tgttgtcgcg gacaacggcg aaaaggggct
     1021 gaccttcgct gttgaaccga ttaagctggc gctatctgaa tcgcttgaag gtttgaataa
     1081 atgacaaaaa gcaaagcctt tgtgccgatg aatctctata ctgtttcaca gacctgctgc
     1141 cctgcggggc ggccatcttc ctttattcgc ttataagcgt ggagaattaa aatgcgacat
     1201 cctttagtga tgggtaactg gaaactgaac ggcagccgcc acatggttca cgagctggtt
     1261 tctaacctgc gtaaagagct ggcaggtgtt gctggctgtg cggttgcaat cgcaccaccg
     1321 gaaatgtaca tcgatatggc gaagcgcgaa gctgaaggca gccacatcat gctgggtgcg
     1381 caaaacgtgg acctgaacct gtccggcgca ttcaccggtg aaacctctgc tgctatgctg
     1441 aaagacatcg gcgcacagta catcatcatc ggccactctg aacgtcgtac ttaccacaaa
     1501 gagtctgacg aactgatcgc gaaaaaattc gcggtgctga aagagcaggg tctgactccg
     1561 gttctgtgca tcggtgaaac cgaagctgaa aacgaagcgg gcaaaactga agaagtttgc
     1621 gcacgtcaga tcgacgcggt actgaaaact cagggtgctg cggcattcga aggtgcggtt
     1681 atcgcttacg aacctgtatg ggcaatcggt actggcaaat ctgcaactcc ggctcaggca
     1741 caggctgttc acaaattcat ccgtgaccac atcgctaaag ttgacgctaa catcgctgaa
     1801 caagtgatca ttcagtacgg cggctctgta aacgcgtcta acgctgcaga actgtttgct
     1861 cagccagaca tcgacggcgc gctggttggc ggtgcgtctc tgaaagctga cgctttcgca
     1921 gtaatcgtta aagctgcaga agcggctaaa caggcttaag tctgacaggt gccggatttc
     1981 atatccggca cttactttcc ttaactcttc gccttaacgc aaaatctcac actgatgatc
     2041 ctgaatttcc tcggctgaag cacggttaag cgtcagtaga tttcgttgtg tcgccagcaa
     2101 tacaaatgag ttatcactct gccgtaccat cgccagcccg tagcttccca tatgttcccg
     2161 cgcctcaggt acttcttctg ccagcatcat aaatgggctg cgttgtacca gttcgctttc
     2221 cgttacccga cgcgccaggt attcatgccc gcgcaaacca cctggcagtg gcaaccagcg
     2281 gctgctgatg ttcgccagat tgttatccag ttgttcgcgc acatcaggac gaatacaaga
     2341 gatatgaata tgaaaatggt tttgcgtacg cccggtgcgg gagttgatcg ccaaagaaac
     2401 cgcgcgatcg ggaaccggct ggccgtactt tttgctcata aaatcacgcg cctgccaggc
     2461 caaccaaaag aagttcggcg ttgaaggatc ggtcaacaaa ggactttcag taccgttaat
     2521 acgatacgtt ggcatcaaca gatattgcag tgggccatta agatctttta aaaccacgta
     2581 tccggcattg ggtttgactt ccgcacatgg cgaaggattt tgattttgct gctgattggg
     2641 caaacattcc tcaaggacaa tcttacgtaa tgtatccgac tcttcaccgg ttaatttcca
     2701 gtaaccaata ccggcagcca caacggcgat aactatcatc accaaaaaaa gaagacccgc
     2761 ttttttcatc ttttttccct gtacctcaaa gagatgcaag ggtaacgcaa aatcgtgaca
     2821 aataaaaaac ccggtcgcga gaaaccaccg ggtttgataa ttatcctggg gaaatcagcg
     2881 tttgctgatc tgatcgaacg taccgccgtt agcaaaatgc tctttttgcg ctttcgtcca
     2941 gccgccgaac tcttcatcaa tggtgaataa cttcagcttt ggaaacgcat tttcgtactt
     3001 tttcgctact tcagcgtcgc gcggacggta gtagtttttc gcggcaattt cctgaccttc
     3061 tggcgagtag agatatttca ggtaggcttc cgccacctct ttggtgcctt ttttctcgac
     3121 cactttatcg accaccgaca cggttggctc tgcgaggata gactcactcg gcgtgacgat
     3181 ttcgaattta tctttcccca gttcattcgc tgccagcaga gcttcgtttt cccaggcgat
     3241 cagtacatcg ccaatcccgc gctcgacaaa ggtgttagtg gagccgcgcg cgccagaatc
     3301 cagaacttcg acgtttttat acagtgcccg aacaaaatcc tgtgcttttg cctgatcgtt
     3361 gttgttgtga tgcagcgcgt agccccaggc agccaggtag ttccagcgtg cgccaccaga
     3421 gcttttcgga ttaggcgtga tcaccgaaac acccggttta atcagatcgt tccagtcatg
     3481 gatctgcttc ggattgccct tacgcaccag gaaaacaatg gtggaagtgt acggtgcgga
     3541 gttatccggc agacgtttga tccactcttt atcaatccgc ccgcgttccg caattgcgtc
     3601 cacgtcatag gccagagcca gcgtgacaac atcagcttca ataccgttga ttaccgacgt
     3661 cgcttgttta cctgaaccac cgtgtgactg acgcatcacc acgttatcac cagtttgctg
     3721 tttccagtgg gcgctgaatg ccttgttgta ctgttcgtac aattcgcgcg ttggatcata
     3781 tgaaacgtta agaagctgaa tatcctttgc cataacgctg gttgccgcca gcaaaaatgt
     3841 taaccctacg ccccacttgt tcatcgcccg actctcttat gttgtgttgt gatgagcaaa
     3901 gcgtgccaga aggttaacca aacattaaag aataaaaaaa gattggctat aacttgcggg
     3961 tatatgttga gggattaaaa aggcggaaga aatccgcctc atattgctga caaagtgcgc
     4021 tttgtccatg ccggatgcgg cgcgaacgcc ttatccggcc tacaaaagtt tgcaaattca
     4081 ataaattgca gaattcatgt aggtctgata agcgaagcgc atcaggcatt tttgcttctg
     4141 tcatcggttt caggctaaag gaatctgcct ttttccgaaa tcattaatac agttttttcg
     4201 cgcagtccag ccagtcacct ttgaacggac gcttcatgtt ttcgatagcg tcgatgatgt
     4261 cgtggtgaac cagctgttcg ttctggatac ctacacaacg accgccgtaa cctgccagca
     4321 gcagatcgat agcgtaagcg cccatacggg aagccagaat acggtcgtaa ggcaccggag
     4381 aaccaccgcg ctggatgtgg cccagcacag ttgcgcgggt ttcacgaccg gtttctttct
     4441 cgatgaaatg cgccagttcg tcaacatcac acatatgttc ggtaatcgcc acgatcgcgt
     4501 gttttttacc tttcgcgata cccgctttga tttcgtttac caggtcttca cggctgaatt
     4561 caacttccgg aaccacaacg aattcacagc caccggcaat ggccgcagcc aacgtcagat
     4621 cgccacaata acggcccatc acttccacca cggaaatacg ctggtgagaa gaagaggtgt
     4681 cacgcagacg gtcgatcgct tctacaacgg tgctcagcgc agtgaagaaa ccgatagtgt
     4741 agtcagtgcc tttgatgtcg ttgtcgatag tgcccggcag accgatgcac gggaagccca
     4801 tttcggtcag acgcattgca cccatgtagg aaccgtcacc gccgataacc accagcgcgt
     4861 cgataccacg ttttttcagg ttttcgatag ccacggcgcg gatgttctcg tcgcggaatt
     4921 ccgggaaacg cgcagaaccg aggaacgtac cgccacggtt gatcatgtca gacacgctgt
     4981 aacggtctag ctgtaccata cggtcttcat acagacccag atagccgtca taaataccca
     5041 ttacttccag accttctgtc agcgcagaac gaacaacccc gcgaattgcg gcgttcatgc
     5101 ctggcgcatc accgccgctt gtcaacacac cgattttctt aatcattact acctctgaac
     5161 tttggaatgc aaaatgaaat ctgttgccgg aagtcttctt gcacatcgaa gtgatccaac
     5221 gaatgtgcaa atagtataac aatcacttcc tgctgaattg attcaggtca ggccaaatgg
     5281 cggtatttta tacacaaaat gcgggtctgg ctctctttta tactgattat gaaagcatag
     5341 accgtttacc ctccctgggt acgacggaac aggggtcctg atggataatt acatccgatc
     5401 ccggaaaacg ccgtaaaata gcctgctcta cctgatccgc caccatatgt gcctgaacca
     5461 aaggcagaga gtcttccatt tccaaatgaa tctgaataaa gcgggtcggc cctgactgcc
     5521 gcgtgcgaag atcgtgagcg ccgctaacac ccggccagga agtcacgata tcaataattt
     5581 cttgccgttc ctcatcaggc aatgcgcgat ccagtaatga ctgtaccgcc tcatatccca
     5641 tgcgtaacgc gctatataaa atatagatgc cgattcccaa tgcaaacaga gcatcggcgc
     5701 gatgccagcc gtaccaggac aaccccagcg ccagcagaat tgcgccgttc atcataacat
     5761 cagactggta atgtagcata tcagcccgca ccgcctggct ttgcgtccgg cgcaccaccc
     5821 aacgctgaaa cgagacaagg ataatcgtac aaattagcgc cacaattgtc acgataaccc
     5881 cgacgcctgg atctatcatc ggtgttggag atatcagatg ttgaataccc gtcaaaaaca
     5941 ggaatagtgc cgaaccagag ataaacatac tttgcgccag cgccgcgagg gactctgctt
     6001 taccgtgacc aaacgagtga ttatcgtcgg caggttgcag ggaatatcgc accaccagta
     6061 aattcgtcaa cgacgcgccg atatccacca gcgaatccac cagcgcggcg agaatactca
     6121 ccgacccggt ataccaccat gcaaaaattt taatcagcaa tagcaacgaa gccatcgccg
     6181 tcgcagcaat cgccgcccga ctgaccagcc gtccataaga ttgattcata aatactcccg
     6241 ctatcaactg acgctagtat aacggaagca aatcatctgc aatgcattaa gcagcaggca
     6301 aattgaggat aaaaaaaaaa ccccacatca tgtgggggaa gacagggatg gtgtctatgg
     6361 caaggaaaac agggtttact actgggaacg tgagttgcta ctactcaata gcttcaacga
     6421 tgaacttttt tgccattgcg tcacgtcacg caactgctcc attcgttgtt gatgtttctc
     6481 gtttaaaacc gcttgctgct ccggcgttaa caggcgatac atttggttgc ggacttttgc
     6541 catctcaacc tgacgagcaa tttgctcatt cgccattttt tctgcctgtg cgcgcacagc
     6601 gttttcatca aaattttctg cggtgacaag gcgatgcatt gtctccagtt cgctaacatt
     6661 aacaggaggc tgttcgtgcc gggcctgttg cataagatct cgcatctgct gacgctgatg
     6721 ttcggttaaa cttatgccgt cgaacatatg gctctgcgta ctgcgctgcg tcctgcgctg
     6781 cgtaagttct tcacccggat gccagttatc gcctgaaccg acttcagcag cgtggcttaa
     6841 tgaactgact gccagcgttg aggccatgac ggcagcggta actatgcgca tcatttgctc
     6901 ccaaaatctt tctgtcgcga ttcaacgata gagagtttac gattcaggct gcaaacatgc
     6961 gtcagggggt gtaaaacaac gtaaagtcat ggattagcga cgtctgatga cgtaatttct
     7021 gcctcggagg tatttaaaca atgaataaaa tcctgttagt tgatgatgac cgagagctga
     7081 cttccctatt aaaggagctg ctcgagatgg aaggcttcaa cgtgattgtt gcccacgatg
     7141 gggaacaggc gcttgatctt ctggacgaca gcattgattt acttttgctt gacgtaatga
     7201 tgccgaagaa aaatggtatc gacacattaa aagcacttcg ccagacacac cagacgcctg
     7261 tcattatgtt gacggcgcgc ggcagtgaac ttgatcgcgt tctcggcctt gagctgggcg
     7321 cagatgacta tctcccgaaa ccgtttaatg atcgtgagct ggtggcacgt attcgcgcga
     7381 tcctgcgccg ttcgcactgg agcgagcaac agcaaaacaa cgacaacggt tcaccgacac
     7441 tggaagttga tgccttagtg ctgaatccag gccgtcagga agccagcttc gacgggcaaa
     7501 cgctggagtt aaccggtact gagtttaccc tgctctattt gctggcacag catctgggtc
     7561 aggtggtttc ccgtgaacat ttaagccagg aagtgttggg caaacgcctg acgcctttcg
     7621 accgcgctat tgatatgcac atttccaacc tgcgtcgtaa actgccggat cgtaaagatg
     7681 gtcacccgtg gtttaaaacc ttgcgtggtc gcggctatct gatggtttct gcttcatgat
     7741 aggcagctta accgcgcgca tcttcgccat cttctggctg acgctggcgc tggtgttgat
     7801 gttggttttg atgttaccca agctcgattc acgccagatg accgagcttc tggatagcga
     7861 acagcgtcag gggctgatga ttgagcagca tgtcgaagcg gagctggcga acgatccgcc
     7921 caacgattta atgtggtggc ggcgtctgtt ccgggcgatt gataagtggg caccgccagg
     7981 acagcgtttg ttattggtga ccaccgaagg ccgcgtgatc ggcgctgaac gcagcgaaat
     8041 gcagatcatt cgtaacttta ttggtcaggc cgataacgcc gatcatccgc agaagaaaaa
     8101 gtatggccgc gtggaactgg tcggtccgtt ctccgtgcgt gatggcgaag ataattacca
     8161 actttatctg attcgtccgg ccagcagttc tcaatccgat ttcattaact tactgtttga
     8221 ccgcccgcta ttactgctga ttgtcaccat gttggtcagt acgccgctgc tgttgtggtt
     8281 ggcctggagt ctggcaaaac cggcgcgtaa gctgaaaaac gctgccgatg aagttgccca
     8341 gggaaactta cgccagcacc cggaactgga agcggggcca caggaattcc ttgccgcagg
     8401 tgccagtttt aaccagatgg tcaccgcgct ggagcgcatg atgacctctc agcagcgtct
     8461 gctttctgat atctctcacg agctgcgcac cccgctgacg cgtctgcaac tgggtacggc
     8521 gttactgcgc cgtcgtagcg gtgaaagcaa ggaactggag cgtattgaaa ccgaagcgca
     8581 acgtctggac agcatgatca acgatctgtt ggtgatgtca cgtaatcagc aaaaaaacgc
     8641 gctggttagc gaaaccatca aagccaacca gttgtggagt gaagtgctgg ataacgcggc
     8701 gttcgaagcc gagcaaatgg gcaagtcgtt gacagttaac ttcccgcctg ggccgtggcc
     8761 gctgtacggc aatccgaacg ccctggaaag tgcgctggaa aacattgttc gtaatgctct
     8821 gcgttattcc catacgaaga ttgaagtggg ctttgcggta gataaagacg gtatcaccat
     8881 tacggtggac gacgatggtc ctggcgttag cccggaagat cgcgaacaga ttttccgtcc
     8941 gttctatcgg accgatgaag cacgcgatcg tgaatctggc ggtacaggat tggggctggc
     9001 gattgttgaa accgccattc agcagcatcg tggctgggtg aaggcagaag acagcccgct
     9061 gggcggttta cggctggtga tttggttgcc gctgtataag cggagttaaa ctccgcattt
     9121 gtaggcagga taaggcgttt acgccgcatc cggcatttga gcaggatgcc tgatgcgacg
     9181 ctgatagcgt cttatcaggc ctacactccg ggggttattt tccccacaac cggcggggaa
     9241 aatcttcgat cttgccgctc agtcggcgct tttgcatcgt ccgcgtccag cttttcgata
     9301 acccggcggc ggagagtaaa cggtgatact gatcgtcatc aaacggcata tgccatgcga
     9361 tggcggcagc ctcctgcacg gtcacatcgc tgacacggga aaccaactcc agcggcgcgt
     9421 ccgcagacac tttccctggc gctatcacgc tatacaacca ccccacctta cctgtgtttt
     9481 gcatcaactg cgctatatcg ctgatatcaa aatggtaatt gagtttatag caaggtgagc
     9541 gcggctggct gacctgaatt aatgcctctc cccagcggaa aatatcgccc atataaacat
     9601 tactttccgt caggccgtcg gttgagaggt tttcaccaaa cgcaggcgca acaaacaact
     9661 ccgcctgttc cggaaattcc cgcgcccagt agagataatg ctcacgagga taatgacaca
     9721 gcgctctgtc tggcccaccg tgaacctttt tctccgcctg ctcgtcacct tccagcccca
     9781 gctccgtcag catcaactca ccatcaacct ggattttggc aattgcgctg ggtttgcctt
     9841 cgggataagc ctgaatcttg cctgtgtata catcaaccgg atatcgcatc tgttccctct
     9901 ccacgagaaa tttccccatt agaccatatt tattttatgt caggcgtgct gttttcgcgg
     9961 taagtatcca ggcaggaact caatagcaaa ccggacgaac gttagttcat ccggctgtgg
    10021 ggattaagga agcaggttta tttcaccgta cctaaaattt cgattttcgc tgctctggct
    10081 ttgactttac gtgaccagat agaggtaaga attggcacca gaatcgaagt cacaatgacc
    10141 gccgtcgcta ccgcggcccc tgcggaactg gaagcggcaa ttccggcagt gccatcgcca
    10201 ccgccaatca atttatcggc gataatcaac ggaataccgg tcacgataat tactgccaca
    10261 cccaacagga tccccagcaa accagtctgg gcaatcacag tcaaatcaat ggtattgccc
    10321 agcgcgaagg caaagaatgg aatcagcgtt tgcaccgctt tgctgaaaaa ttctcgtaat
    10381 tcagggtcaa ggttccccag ggcaaagccc accaagaacg gtaatactgc gccgacgaaa
    10441 acatgcggtt caaacgaggc aatccctgca gtgcccagaa taatcatcgt catgagcggc
    10501 ccggactcca acgacatcaa cacaaatgcc ccagcttctt cttttgtgcc gtactgctgc
    10561 atgatggaag cgtaaagtcc gccattggtc atatccatcg ccgccaccag cgccagcgtt
    10621 gaaagtccgg caaagaatcc aacttcaaca ccatgttccg gaataatgcg cgaggcaatt
    10681 gccgcaacca cccacgcgac ggcaattttt gttaccacca gcgtaccgga tttacgcaat
    10741 accgttcccg tcgcgcttaa ttttattgac gcccccatgc aaaaaaacca caccgccaga
    10801 atggacaccg taccggtaat catcccgttg gtgaatgatc caaaatattt ccccgccccc
    10861 ggcgagaagg tgtggcacag tgcgccaagg aatagcggga cgagcatcat cccccccggg
    10921 attttctcaa tcgagcgttt tatctgcatt tccatcacct gtcggcatat ttttaagggc
    10981 tgatgcgtaa ttcctcaatg gagcatcagt gttgatggaa acgaagatag acattcattt
    11041 aatcaataaa agtgatcaaa accacatcaa ttgaaacgct gttttatttt tatcggataa
    11101 ttgtttttat tttgaaattg atcataaaaa aaccaccgcc gttggcgatg gttcattttt
    11161 taagctgata tgcggcgtaa acgcctcatt gcagcaggcg gcaaatgatt attttttcgc
    11221 cgcgaaacgt gccgctgctt catcccagtt caccacgttc cagaactctt tgatgtagtc
    11281 gggacggcgg ttctggaatt tcaggtagta agcatgttcc cacacatcca ggcccagaat
    11341 cgggaagccg gaagcgccag aaatagcttc acccatcagc ggggaatcct ggttagcagt
    11401 agaaaccacc gccagtttat cgcctttcag caccagccat gcccagccgg aaccaaagcg
    11461 ggaagctgcc gctttctcaa attctgcttt gaagttatca acggagccga agtcacgttc
    11521 gatagccgct ttcaggtcac cctgtaaggt ggtgcctttt ttcagacctt tccagaacag
    11581 gctgtggtta gcgtgaccgc cagcgttgtt gcgcagtacg gttttcttgt ctgctggcag
    11641 ctggtccagt ttggtgatca gctcttcaac cggcaggttg gcaaattctg gcaggctttc
    11701 cagcgccgcg ttggcgttgt tgacgtaggt ctgatggtgt ttggtgtggt ggatttccat
    11761 ggtctgctta tcgaagtgcg gttccagggc atcgtaagca tacggcaggg atggcagggt
    11821 atagctcata ttcatctcca gtattgtcgg gcggccgatt gttaatgcgc gtaagcagtt
    11881 ggttcattat agttaattaa atgatattga aaatgattat caatgccgta cttttcgtaa
    11941 gggtatggtt ttgcaggaaa atgcccgaga tgtgaagcaa atcacccact taatgccgtg
    12001 attgccagta aatcgacaac ggcggcaaca ggcgaaaggt taatcgacag cacgattttt
    12061 acactcatct cgtcggagat gtgacgcgac gaaaaatgat gaggataaga agatgagtaa
    12121 cgcgattacg atggggatat tttggcattt gatcggcgcg gccagtgcag cctgttttta
    12181 cgctccgttc aaaaaagtaa aaaaatggtc atgggaaacc atgtggtcag ttggtgggat
    12241 tgtttcgtgg attattctgc cgtgggccat cagcgccctg ttactgccga atttctgggc
    12301 gtattacagc tcgtttagtc tctctacgct gctgcctgtt tttctgttcg gcgctatgtg
    12361 ggggatcggt aatatcaact acggcctgac catgcgttat ctcggcatgt cgatgggaat
    12421 tggcatcgcc attggcatta cgttgattgt cggtacgctg atgacgccaa ttatcaacgg
    12481 caatttcgat gttctgctta ataccgaagg cggacgcatg acgttgctcg gcgttctggt
    12541 ggcgctgatt ggtgtaggga ttgtgactcg cgccgggcag ttgaaagagc gcaaaatggg
    12601 cattaaagcc gaagagttca acctgaaaaa agggctggtg ctggcggtga tgtgcggcat
    12661 tttctctgcc ggtatgtctt ttgcgatgaa cgccgcaaaa ccgatgcatg aagccgctgc
    12721 cgcactgggc gtcgatccac tgtatgtcgc tctgccaagc tatgtcatca tcatgggcgg
    12781 cggcgcgatc atcaacctcg gtttctgctt cattcgtctg gcaaaagtga aggatttgtc
    12841 gctaaaagcc gacttctcgc tggcaaaacc gctgatcatt cacaatgtgt tactctcagc
    12901 actgggcggg ttgatgtggt atctgcaatt ctttttctat gcctggggcc acgcccgcat
    12961 tccggcgcag tatgactaca tcagttggat gctgcatatg agtttctatg tattgtgcgg
    13021 cggtatcgtc gggctggtgc tgaaagagtg gaacaatgca ggtcgccgtc cggtaacggt
    13081 gttgagcctc ggttgtgtgg tgattattgt cgccgccaac atcgtcggca tcggcatggc
    13141 gaattaatct ttctgcgaat tgagatgacg ccactggctg ggcgtcatcc cggtttcccg
    13201 ggtaaacacc accgaaaaat agttactatc ttcaaagcca cattcggtcg aaatatcact
    13261 gattaacagg cggctatgct ggagaagata ttgcgcatga cacactctga cctgccgcag
    13321 atattgattg atggtcattc cagtctgctg gcgaaattgc tgacgcaaaa cgcgctcact
    13381 gcacgatgcc tcatcacaaa atttatccag cgcaaaggga cttttcaggc tagccgccag
    13441 ccgggtaatc agcttatcca gcaacgtttc gctggatgtt ggcggcaacg aatcactggt
    13501 gtaacgatgg cgattcagca acatcaccaa ctgcccgaac agcaactcag ccatttcgtt
    13561 agcaaacgac acatgctgac tactttcatg ctcaagctga ccgataacct gccgcgcctg
    13621 cgccatcccc acgctaccta agcgccagtg tggttgccct gcgctggcgc taaatcccgg
    13681 aatcgctccc tgccagtcaa gattcagctt cagccgctcc gggcaataaa taatattctg
    13741 caaaaccaga tcgttaacgg aagcgtagga gtgtttatcg tcagcatgaa tgtaaaagag
    13801 atcgccacgg gtaatgcgat aagggcgatc gttgagtaca tgcagaccat taccgcgcca
    13861 gacaatcacc agctcacaaa aatcatgtgt atgttcggca aaaacatctt gcggataacg
    13921 gtcagccaca gcgactgcct gctggtcgct ggcaaaaaaa tcatctttga gaagttttaa
    13981 ctgatgcgcc accgtggcta cctcggccag agaacgaagt tgattattcg caatatggcg
    14041 tacaaatacg ttgagaagat tcgcgttatt gcagaaagcc atcccgtccc tggcgaatat
    14101 cacgcggtga ccagttaaac tctcggtgaa aaagcgtcga aaagtggtta ctgtcgctga
    14161 atccgcagcg ataggcgatg tcagtaacgc tggcctcgct gtgacgtagc agatgtcggg
    14221 ccttcatcag tcgcaggcgg ttcaggtaac gctgaggcgt cagtcccgtt tgctgcttaa
    14281 gctgccgatg tagcgtacgc agtgaaagag aaaattgatc cgccacggca tcccaattca
    14341 cctcatcggc aaaatggtcc tccagccagg ccagaagcaa gttgagacgt gatgcgctgt
    14401 tttccaggtt ctcctgcaaa ctgcttttac gcagcaagag cagtaattgc ataaacaaga
    14461 tctcgcgact ggcggtcgag ggtaaatcat tttccccttc ctgctgttcc atctgtgcaa
    14521 ccagctgtcg cacctgctgc aatacgctgt ggttaacgcg ccagtgagac ggatactgcc
    14581 catccagttc ttgtggcagc aactgattca gcccggcgag aaactgaaat cgatccggcg
    14641 agcgatacag cacattggtc agacacagat tatcggtatg ttcatacaga tgccgatcat
    14701 gatcgcgtac gaaacagacc gtgccaccgg tgatggtata gggctgccca ttaaacacat
    14761 gaatacccgt gccatgttcg acaatcacaa tttcatgaaa atcatgatga tgttcaggaa
    14821 aatccgcctg cgggagccgg ggttctatcg ccacggacgc gttaccagac ggaaaaaaat
    14881 ccacactatg taatacggtc atactggcct cctgatgtcg tcaacacggc gaaatagtaa
    14941 tcacgaggtc aggttcttac cttaaatttt cgacggaaaa ccacgtaaaa aacgtcgatt
    15001 tttcaagata cagcgtgaat tttcaggaaa tgcggtgagc atcacatcac cacaatgaag
    15061 caaattgtga atatcatcac gttcatcttt ccctggttgc caatggccca ttttcctgtc
    15121 agtaacgaga aggtcacgaa ttcaggcgct ttttagactg gtcgtaatga aattcagcag
    15181 gatcacatta tgacctttcg caattgtgtc gccgtcgatc tcggcgcatc cagtgggcgc
    15241 gtgatgctgg cgcgttacga gcgtgaatgc cgcagcctga cgctgcgcga aatccatcat
    15301 tttaacaatg gcctgcatag ccagaacggt tatgtcacct ggaatgtgga tagcctggaa
    15361 agtgccattc gccttgaatt aaacaaggtg tgcgaggaag ggattcgtat cgatagcatt
    15421 gggattgata cctggggcgt ggactttgtg ctgctcgacc aacagggtca gcgtgtgggc
    15481 ctgcccgttg cttatcgcga tagccgctcc aatggcctaa tggcgcaggc acagcaacaa
    15541 ctcggcaaac gcgatattta tcaacgtagc ggcatccagt ttctgccctt caatacgctt
    15601 tatcaactgc gtgcgctgac ggagcaacaa cctgaactta ttccacacat tgctcacgct
    15661 ctgctgatgc cggattactt cagctatcgc ctgaccggca agatgaactg ggaatatacc
    15721 aatgccacca ccacacaact ggtcaatatc aatagcgacg actgggacga gtcgctactg
    15781 gcgtggagcg gggccaacaa agcctggttt ggtcgcccga cgcatccggg taatgtcatt
    15841 gggcactgga tttgcccgca gggtaatgag attccggtgg tcgccgttgc cagccatgat
    15901 accgccagcg cggttatcgc ctcgccgtta aacggttcac gcgctgctta tctctcttct
    15961 ggcacctggt cattgatggg cttcgaaagc cagacgccat ttaccaatga cacggcgctg
    16021 gcagccaaca taaccaatga aggcggggcg gaaggtcgct atcgggtgct gaaaaatatt
    16081 atgggcttat ggctgcttca gcgagtgctt caggagcggc aaatcaacga tctcccggcg
    16141 cactttctct cccactgcga gcgcattaaa gccaccaacg gtaaagatcg ggtgatcatg
    16201 cactgccacg ccaccaacct gatcgccctc acctatgtac tggaaaacga caccgcggtc
    16261 tttactcgcc aactgtggga aggcagcacc gagtgtctgg tggtattccc ggatggcgtt
    16321 ggcattctgc cgtggatggt gcccggcacg gacgaaatcg gccaggcgac cgcacaagag
    16381 atgcaaaaac attcgctggt gttgtggccc ttccacggcg tcttcggcag cgggtcgacg
    16441 ttggatgaaa cattcggttt aatcgacacc gcagaaaaat cagcacaagt attagtgaag
    16501 gtttattcga tgggcggcat gaaacagacc atcagccgtg aagagttgat agcgctcggc
    16561 aagcgcttcg gcgttacacc actagccagt gcgctggcgc tgtaaggagc aaacatgatc
    16621 cgcaaagcct ttgtcatgca ggttaacccc gacgcccacg aagagtatca gcgtcggcat
    16681 aaccccatct ggccggaact ggaagcagtg ttgaaatctc acggtgcgca taactacgcc
    16741 atttacctcg acaaagcgcg taatctgctg tttgccacgg tagagattga atctgaagaa
    16801 cggtggaatg cggtagccag tactgatgtt tgccaacgtt ggtggaaata tatgaccgat
    16861 gttatgcccg ctaacccgga taacagcccg gtgagtagcg agct
//
LOCUS       DADMHM010000071        16693 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.072, whole genome shotgun sequence.
ACCESSION   DADMHM010000071 DADMHM010000000
VERSION     DADMHM010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16693)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16693)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16693
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.072"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            56..526
                     /locus_tag="JN125_002091"
     CDS             56..526
                     /locus_tag="JN125_002091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001212336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HAY8871879.1"
                     /translation="MDLALVTGQRREDITNMRFSDIYDDRLHIRQIKTGMMIAIPLSL
                     SLPVAGLRLGAVVEQCRMVSRGDYLISAGIRKNSPDGSIHPDGLTKKFVAARKLTGIQ
                     FSENPPTFHEVRSLAGRLYKETCGEEFAQRLLGHTSEKTTKMYLDEREKTYLLL"
     gene            complement(919..1260)
                     /locus_tag="JN125_002092"
     CDS             complement(919..1260)
                     /locus_tag="JN125_002092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebY family protein"
                     /protein_id="HAY8871880.1"
                     /translation="MMKKSILAFLLLTSSAAALAAPQVITVSRFEVGKDKWAFNREEV
                     MLTCRPGNALYVINPSTLVQYPLNDIAQKEVASGKTNAQPISVIQIDDPNNPGKKMSL
                     APFIERAEKLC"
     gene            complement(1273..2145)
                     /gene="copD"
                     /locus_tag="JN125_002093"
     CDS             complement(1273..2145)
                     /gene="copD"
                     /locus_tag="JN125_002093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis membrane protein CopD"
                     /protein_id="HAY8871881.1"
                     /translation="MLAFTWIALRFIHFTSLMLVFGFAMYGAWLAPLTIRRLLAKRFL
                     RLQQHAAVWSLISATAMLAVQGGLMGTGWTDVFSPNIWQAVLQTQFGGVWLWQIVLAL
                     VTLIVALMQPRNMPRLLFMLTTAQFILLAGVGHATLNEGVTAKIHQTNHAIHLICAAA
                     WFGGLLPVLWCMQLIKGRWRHQAIQALMRFSWCGHFAVIGVLASGVLSALLITGFPPT
                     LTTYWGQLLLLKAILVMIMVVIALANRYVLVPRMRQDEDRAAPWFVWMTKLEWAIGAV
                     VLVIISLLATLEPF"
     gene            complement(2149..2523)
                     /gene="yobA"
                     /locus_tag="JN125_002094"
     CDS             complement(2149..2523)
                     /gene="yobA"
                     /locus_tag="JN125_002094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopC domain-containing protein YobA"
                     /protein_id="HAY8871882.1"
                     /translation="MASTARSLRYALAILTTSLVTPSVWAHAHLTHQYPAANAQVTAA
                     PQAITLNFSEGVETGFSGAKITGPKNENIKTLPAKRNEQDQKQLIVPLADSLKPGTYT
                     VDWHVVSVDGHKTKGHYTFSVK"
     gene            2662..2892
                     /locus_tag="JN125_002095"
     CDS             2662..2892
                     /locus_tag="JN125_002095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit theta"
                     /protein_id="HAY8871883.1"
                     /translation="MLKNLAKLDQTEMDKVNVDLAAAGVAFKERYNMPVIAEAVEREQ
                     PEHLRSWFRERLIAHRLASVKLSRLPYEPKLK"
     gene            2994..3650
                     /locus_tag="JN125_002096"
     CDS             2994..3650
                     /locus_tag="JN125_002096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HAY8871884.1"
                     /translation="MSFWKVAAAQYEPRKTSLTEQVAHHLEFVRAAARQQCQLLVFPS
                     LSLLGCDYSRRALPAPPDLSLLDPLCYAATTWRMTIIAGLPVEYNDRFIRGIAVFAPW
                     RKTPGIYHQSHGACLGRRSRTITVVDEQPQGMDMDPTCSLFTTGQCLGEPDLLASARR
                     LQFFSHQYSIAVLMANARGNSALWDEYGRLIVRADRGSLLLVGQRSSQGWQGDIIPLR
                     "
     gene            3674..4336
                     /gene="exoX"
                     /locus_tag="JN125_002097"
     CDS             3674..4336
                     /gene="exoX"
                     /locus_tag="JN125_002097"
                     /EC_number="3.1.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease X"
                     /protein_id="HAY8871885.1"
                     /translation="MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSHLVRPDRPIS
                     PQAMAIHRITEAMVADKPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKL
                     ARRLWPGIKYSNMALYKTRKLNVQTPPGLHHHRALYDCYITAALLIDIMNTSGWTAEQ
                     MADITGRPSLMTTFTFGKYRGKAVSDVAERDPGYLRWSFNNLDSMSPELRLTLKHYLE
                     KT"
     gene            complement(4333..6407)
                     /gene="ptrB"
                     /locus_tag="JN125_002098"
                     /pseudo
     CDS             complement(4333..6407)
                     /gene="ptrB"
                     /locus_tag="JN125_002098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416359.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptidase B"
     gene            complement(6616..7275)
                     /locus_tag="JN125_002099"
     CDS             complement(6616..7275)
                     /locus_tag="JN125_002099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance TerB family protein"
                     /protein_id="HAY8871886.1"
                     /translation="MSNWLNQLQSLLGQSSSSISSSADQGLGKLLVPGALGGLAGLLV
                     ANKSARKLLTKYGTNALLVGGGAVAGTVLWNKYKDKIRAAHQDEPQFGAQSTPLDERT
                     ERLILALVFAAKSDGHIDAKERAAIDQQLREAGVEEQGRVLIEQAIEQPLDPQRLATG
                     VRNEEEALEIYFLSCAAIDIDHFMERSYLNALGDALKIPQDVRDGIERDLEQQKRTLA
                     E"
     gene            complement(7589..7945)
                     /gene="yebF"
                     /locus_tag="JN125_002100"
     CDS             complement(7589..7945)
                     /gene="yebF"
                     /locus_tag="JN125_002100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310584.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YebF"
                     /protein_id="HAY8871887.1"
                     /translation="MKKRGAFLGLLLVSACASVFAANNETSKSVTFPKCEGLDAAGIA
                     ASVKRDYQQNRVARWADDQKIVGQADPVAWVSLQDIQGKDDKWSVPLTVRGKSADIHY
                     QVSVDCKAGMAEYQRR"
     gene            complement(8012..8228)
                     /locus_tag="JN125_002101"
                     /pseudo
     CDS             complement(8012..8228)
                     /locus_tag="JN125_002101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310585.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="damage-inducible protein YebG"
     gene            8362..9540
                     /gene="purT"
                     /locus_tag="JN125_002102"
     CDS             8362..9540
                     /gene="purT"
                     /locus_tag="JN125_002102"
                     /EC_number="2.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent phosphoribosylglycinamide
                     formyltransferase"
                     /protein_id="HAY8871888.1"
                     /translation="MTLLGTALRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRY
                     ADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAIATDMLIQLEEEGLNVV
                     PCARATKLTMNREGIRRLAAEELQLPTSTYRFADSESLFREAVADIGYPCIVKPVMSS
                     SGKGQTFIRSAEQLAQAWKYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFC
                     APVGHRQEDGDYRESWQPQQMSPLALERAQEIARKVVLALGGYGLFGVELFVCSDEVI
                     FSEVSPRPHDTGMVTLISQDLSEFALHVRAFLGLPVGGIRQYGPAASAVILPQLTSQN
                     VTFDNVQNAVGADLQIRLFGKPEIDGSRRLGVALATAESVVDAIERAKHAAGQVKVQG
                     "
     gene            complement(9596..10237)
                     /locus_tag="JN125_002103"
     CDS             complement(9596..10237)
                     /locus_tag="JN125_002103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HAY8871889.1"
                     /translation="MKNWKTSAESILTTGPVVPVIVVKKLEHAVPMAKALVAGGVRVL
                     EVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLK
                     AATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCP
                     TGGISPANYRDYLALKSVLCIGGSWLVPADALEAGDYDRITKLAREAVEGAKL"
     gene            complement(10274..12085)
                     /gene="edd"
                     /locus_tag="JN125_002104"
     CDS             complement(10274..12085)
                     /gene="edd"
                     /locus_tag="JN125_002104"
                     /EC_number="4.2.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020244583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphogluconate dehydratase"
                     /protein_id="HAY8871890.1"
                     /translation="MNPQLLRVTNRIIERSRETRSAYLARIEQAKTSTVHRSQLACGN
                     LAHGFAACQPEDKASLKSMLRNNIAIITSYNDMLSAHQPYEHYPEIIRKALHEANAVG
                     QVAGGVPAMCDGVTQGQDGMELSLLSREVIAMSAAVGLSHNMFDGALFLGVCDKIVPG
                     LTMAALSFGHLPAVFVPSGPMASGLPNKEKVRIRQLYAEGKVDRMALLESEAASYHAP
                     GTCTFYGTANTNQMVVEFMGMQSPGSSFVHPDSPLRDALTAAAARQVTRMTGNGNEWM
                     PIGKMIDEKVVVNGIVALLATGGSTNHTMHLVAMARAAGIQINWDDFSDLSDVVPLMA
                     RLYPNGPADINHFQAAGGVPVLVRELLKAGLLHEDVNTVAGFGLSRYTLEPWLNNGEL
                     DWREGAEKSLDSNVIASFEQPFSHHGGTKVLSGNLGRAVMKTSAVPVENQVIEAPAVV
                     FESQHDVMPAFEAGLLDRDCVVVVRHQGPKANGMPELHKLMPPLGVLLDRCFKIALVT
                     DGRLSGASGKVPSAIHVTPEAYDGGLLAKVRDGDIIRVNGQTGELTLLVDEAELAARE
                     PHIPDLSASRVGTGRELFSALREKLSGAEQGATCITF"
     gene            complement(12320..13795)
                     /gene="zwf"
                     /locus_tag="JN125_002105"
     CDS             complement(12320..13795)
                     /gene="zwf"
                     /locus_tag="JN125_002105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HAY8871891.1"
                     /translation="MAVTQTAQACDLVIFGAKGDLARRKLLPSLYQLEKAGQLNPDTR
                     IIGVGRADWDKAAYTKVVREALETFMKETIDEGLWDTLSARLDFCNLDVNDTAAFNRL
                     GAMLDQKNRITINYFAMPPSTFGAICKGLGEAKLNAKPARVVMEKPLGTSLATSQEIN
                     DQVGEYFEECQVYRIDHYLGKETVLNLLALRFANSLFVNNWDNRTIDHVEITVAEEVG
                     IEGRWGYFDKAGQMRDMIQNHLLQILCMIAMSPPSDLSADSIRDEKVKVLKSLRRIDR
                     SNVREKTVRGQYTAGFAQGKKVPGYLEEEGANKSSNTETFVAIRVDIDNWRWAGVPFY
                     LRTGKRLPTKCSEVVVYFKTPELNLFKESWQDLPQNKLTIRLQPDEGVDIQVLNKVPG
                     LDHKHNLQITKLDLSYSETFNQTHLADAYERLLLETMRGIQALFVRRDEVEEAWKWVD
                     SITEAWAMDNDAPKPYQAGTWGPVASVAMITRDGRSWNEFE"
     gene            14133..15001
                     /locus_tag="JN125_002106"
                     /pseudo
     CDS             14133..15001
                     /locus_tag="JN125_002106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416367.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
     gene            15129..16571
                     /locus_tag="JN125_002107"
     CDS             15129..16571
                     /locus_tag="JN125_002107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase II"
                     /protein_id="HAY8871892.1"
                     /translation="MSRRLRRTKIVTTLGPATDRDNNLEKVIAAGANVVRMNFSHGSP
                     EDHKMRADKVREIAAKLGRHVAILGDLQGPKIRVSTFKEGKVFLNIGDKFLLDANLGK
                     GEGDKEKVGIDYKGLPADVVPGDILLLDDGRVQLKVLEVQGMKVFTEVTVGGPLSNNK
                     GINKLGGGLSAEALTEKDKADIKTAALIGVDYLAVSFPRCGEDLNYARRLARDAGCDA
                     KIVAKVERAEAVCSQDAMDDIILASDVVMVARGDLGVEIGDPELVGIQKALIRRARQL
                     NRAVITATQMMESMITNPMPTRAEVMDVANAVLDGTDAVMLSAETAAGQYPSETVAAM
                     ARVCLGAEKIPSINVSKHRLDVQFDNVEEAIAMSAMYAANHLKGVTAIITMTESGRTA
                     LMTSRISSGLPIFAMSRHERTLNLTALYRGVTPVHFDSANDGVAAASEAVNLLRDKGY
                     LMSGDLVIVTQGDVMSTVGSTNTTRILTVE"
BASE COUNT         4153 a         4255 c         4130 g         4155 t
ORIGIN      
        1 atacaactgc atcagggagg cagcagatca acttccggca tggttcccat tagctatgga
       61 tttagccctt gtaacaggac aacgtcgcga agacataacg aatatgcggt tcagtgatat
      121 ttatgatgat cgtctccaca tcaggcaaat taagacagga atgatgattg ctatccccct
      181 gtcactcagc cttcctgtcg ctggtttacg acttggtgca gtagttgaac aatgccgcat
      241 ggtaagtagg ggggattatc taatcagtgc cgggattaga aaaaacagcc ctgacggcag
      301 cattcacccg gacggcctga caaagaaatt tgtcgcagcc agaaaattaa caggtatcca
      361 gttcagtgaa aacccaccaa cttttcacga agtcagaagc ctggctggac gattgtacaa
      421 agaaacatgt ggagaagaat ttgctcagcg tctacttggc cacacatcgg agaagacaac
      481 aaaaatgtat cttgatgaga gagaaaaaac gtacttactg ctctgatttt aacgtaaatg
      541 gattgttaaa tgtattttgg ttgtgatata accaaaaaag accggaatac agaaattcga
      601 gtaaatttcg gggaatttcg gggagatatt tgcaactaat tgatttcaaa tgcaattaaa
      661 aaaagaccga atacgattcc tgtattcggt ccagggaaat ggctcttggg agagagccgt
      721 gcgctaaaag ttggcattaa tgcaggctta gttgccttgc cctttaagaa tagatgacga
      781 cgccaggttt tccagtttgc gtgcaaaatg gtcaataaaa agcgtggtgg tcatcagctg
      841 aaatgttaaa aaccgcccgt tctggtgaaa gaactgaggc ggttttttta ttggaaatca
      901 aaaggctatt ttaggtaatt aacagagttt ttcagctcgt tctataaacg gtgccagact
      961 catttttttg ccgggattgt taggatcatc aatctgaatc accgaaatgg gttgggcatt
     1021 ggtcttccca ctggcaactt ccttttgtgc gatatcgttt aaaggatact gcacgagggt
     1081 actcggatta ataacataca aagcattacc cggtcggcaa gtcagcatca cctcttcgcg
     1141 attaaacgcc catttgtctt tacccacttc aaaacgactg acggtaatca cctgcggtgc
     1201 agccagcgcc gctgcagaac tggtgagtaa cagaaacgcc agaatacttt ttttcatcat
     1261 tttcgtaatc catcaaaaag gttcgagagt cgcaagcagg ctgatgatca ccagcactac
     1321 cgcacctatc gcccattcga gtttagtcat ccacacaaac cagggtgccg cacgatcttc
     1381 atcctgcctc atgcgcggta caagaacata acgattagcc agcgcaatga ccaccataat
     1441 catcaccagg atggctttga gcaataagag ttggccccag taagtcgtaa gcgtgggggg
     1501 aaatccggta atcaacaatg cactaagcac gccgcttgcc agtacgccga tcaccgcaaa
     1561 atgcccgcac catgaaaaac gcatcagcgc ctgaatagcc tggtgtcgcc aacggccttt
     1621 gatgagttgc atacaccaga gcaccggcag taatccccca aaccacgccg ccgcacaaat
     1681 caggtgaatc gcgtgattag tctgatggat tttcgccgtt accccttcat tcagcgtcgc
     1741 atgccccact cccgccagca gaataaattg cgcggtagtg agcataaaca gcaaacgtgg
     1801 catattccgc ggttgcataa gggcgacgat caacgttacg agggcgagaa caatttgcca
     1861 taaccagacg ccaccaaact gcgtttgcaa aacagcctgc caaatgtttg gcgaaaatac
     1921 atctgtccat cccgttccca tcaacccgcc ctgaacggcg agcattgcag tggcactgat
     1981 caaactccag acggcagcgt gctgttgtaa acgcagaaaa cgcttcgcca gcaagcgacg
     2041 aatcgtcaag ggggccagcc aggcaccgta cattgcgaag ccaaaaacca gcatcagcga
     2101 ggtgaaatgg ataaatcgca gcgcgatcca ggtaaacgcc agcatgattt atttcacgct
     2161 aaaggtgtag tgtcctttcg ttttatgccc gtccaccgaa acaacatgcc agtcaacggt
     2221 gtaggttccg ggtttcagcg aatcggccag tggaacaatc agttgctttt ggtcctgctc
     2281 atttcgcttc gccggtaatg ttttaatatt ttcgtttttt ggccccgtga tttttgcacc
     2341 actgaatcct gtttcaacac cttccgagaa gtttaaagtg attgcctgcg gtgcagctgt
     2401 cacttgcgcg tttgccgcag gatactgatg cgttaaatgc gcatgtgccc agacggaagg
     2461 tgtcaccaac gaagtggtca ggattgccag cgcgtagcga agggagcgtg cagttgaagc
     2521 catattatct attccttttt gtaataactt ttttacagag cataaccttg tctaatgtct
     2581 gagtcgagga tcatcaattc cggcttgcca tcctggctca ctcttagtaa cttttgcccg
     2641 cgaatgatga ggagattaag aatgctgaag aatctggcta aactggatca aacagaaatg
     2701 gataaagtga atgtcgattt ggcggcggcc ggggtggcat ttaaagaacg ctacaatatg
     2761 ccggtgatcg ctgaagcggt tgaacgtgaa cagcctgaac atttgcgcag ctggtttcgc
     2821 gagaggctta ttgcccaccg tttggcttcg gtcaaactgt cacgtttacc ttacgagccc
     2881 aaacttaaat aaaacttata cagagttaca ctttcttaca taacgcctgc taaattatga
     2941 gtattttcta aaccgcaccc ataatttgca gtcattttga aaaggaagtc attatgtcgt
     3001 tctggaaagt tgcagcagcg caatatgagc ctcgtaaaac ctcactcacc gaacaggtag
     3061 ctcatcatct ggagtttgtg agggccgccg ccaggcaaca atgtcagctg ttagtttttc
     3121 catcgctttc tttactgggg tgtgattatt cgcgacgtgc ccttcctgcc ccacccgatc
     3181 tctcactgtt agacccgctt tgttatgccg caacgacctg gcgaatgacc atcattgccg
     3241 gccttcccgt tgaatataac gatcgcttta ttcgtggaat tgcggtgttc gcaccgtggc
     3301 gaaaaacgcc tgggatctac catcagagtc atggtgcatg tctgggccgt cgttccagaa
     3361 ccatcacggt ggtcgatgaa caaccgcaag gtatggatat ggacccgacc tgttcactgt
     3421 ttactacagg gcaatgtctg ggagaacccg acctgctggc gtcggcccgt cgcttacaat
     3481 ttttttcaca tcagtactcg attgccgtgc tgatggcaaa tgcccgtggt aacagtgcac
     3541 tatgggatga atatggtcgt ctcatcgttc gcgccgatcg tggttcatta ttgttagtcg
     3601 gtcagcgttc atcacagggt tggcaaggcg atatcattcc attacgctag gctttttcgg
     3661 cctggagcat gccatgttgc gcattatcga tacagaaacc tgcggtttgc agggagggat
     3721 cgttgagatt gcctctgttg atgtcattga cggaaaaatc gtcaacccca tgagccacct
     3781 ggtgcgcccc gatcgtccta ttagtccaca agcgatggcg attcatcgca tcaccgaagc
     3841 catggtcgcc gataaaccgt ggattgaaga tgtgatccca cactattacg gtagtgaatg
     3901 gtatgtcgcg cacaacgcca gctttgaccg ccgcgtactg cctgagatgc ccggtgagtg
     3961 gatttgcact atgaaactgg cccgtcgttt gtggccaggg atcaagtaca gcaatatggc
     4021 gttatataaa acacggaagc tcaatgtaca gacgccgccg ggcctgcatc atcaccgcgc
     4081 gttgtatgac tgttatatca ccgccgcgtt gcttatcgat attatgaaca cctccggctg
     4141 gacggcagaa cagatggccg atatcaccgg acgtccgtcg ttgatgacga ccttcacctt
     4201 tggcaaatac cgtggcaaag cggtttccga cgttgccgaa cgcgatccgg gctatctgcg
     4261 ctggtcattt aataacctgg acagcatgag cccggagctg cgtttaacac tgaaacatta
     4321 tctggaaaag acttaatccg caggcgtagc gggtaatgtt ccctgcgcca gcgcgaccag
     4381 aaaagcatat tccatcgcta cgccttcgta cgatttaaag cggccagatt taccgccatg
     4441 gcctgagtcc atgtcggtac agagcaataa aagatggtta tcggttttca gctcgcgcaa
     4501 tttagcgacc cattttgccg gttcccaata ttgcacctga gaatcgtgta aaccggtcgt
     4561 taccagtaaa tgcggataag cctgtgcggt gacgttgtca tacgggctgt agcttttcat
     4621 gtactcgtaa tattgcggat cctgcgggtt accccactct tcaaactcac cagtggtaag
     4681 aggaattgat tcatcaagca tcgttgttac aacatcaaca aacggtacct gggcgataac
     4741 gccgtggaat aattccgggc gttgattaat tgcaacgccc atcaacatgc cccccgcact
     4801 cccgcccatc gcataacaaa gcgaaggaaa gccatagccc agttttaaca atgcatcgca
     4861 ggcatcaaga taatcattaa acgtattttt cttcttcaga aattttccgt cttcgtacca
     4921 ttgttgcccc agctcaccac cgccgcgaac atggacaatg gcgtagacaa agccacgatc
     4981 taacaaactc aagcggctaa aactgaaatc ggcatcaata cttgcgccgt aagaaccata
     5041 gccatacacc agcaacgggt tgtgtccttt gcgaaaatgt ttgcgatggt agaccaacga
     5101 aaccggaact tcgacgccat cacgggcgac tatccacagg tgttcactgc ggtaattcgc
     5161 cgcatcaaaa ccaggaactt ccgtttgttt taatacacga cgctcaccgg tatccatatc
     5221 cagttcaaac aaagtgtctg gtgtggtcat ggaagaataa ccataacgca atcgcgcggt
     5281 ttcaggttct ggattgtagg caatccaggt cacataggct ggatcatcaa aggcaatacc
     5341 aatgacttcc cgggtcttgc ggttaatttg gcgcaaactg gttaacccac gctgacgctc
     5401 ttcaaccacc agccagtcgg taaacagcgt aaacccttcc agcatgatgt tttcgcgtgg
     5461 cggaattaac tcttcccact gttgctcatc acgcaggcgg gtacggtata agccaaagtt
     5521 tttgccgtgg cggttggaac gcagataaaa ccgatgctgg tagtgatcaa ggctgtattc
     5581 gtgatctttg cggcgcggca gaaaaacaaa cggctcggca tcggccattt ccgcgtccag
     5641 caggcgaact tcactggtgg tggcgctggc caaatgaatg actacatagt gcttcgaggt
     5701 cgttttatgc aggctgacgt aataggtatc gtctttttct tcgtagatca gtttatcttg
     5761 cgatgctggc gtaccgatgg cgtgacgcca gacctgataa ggcagcagcg tcaccggatg
     5821 cttgcgaaca tagtagaaag tccaggagtc atttgcccag acaaagctgg gttcaacgtt
     5881 atccagcagt tccgggtacc agttaccagt ttccagtttc cagtttccag attacgaaaa
     5941 cgaatgccgt actggcgtcg ggaaagaaaa tcttctgcca gcgccataat ggtgttatcg
     6001 ggcgtaatcg ccattccgcc catcgaataa aactcactat gagctgcgcg cttattggca
     6061 tcgagcaatg tttcccactc atcccactct tcactgaatg ccgattgacg ctggtagata
     6121 gcatattcac agcctggttc ataaatatgc cgatagcggt agccattttt gatgtagggc
     6181 gcagaaactt ctcgttgcgg aatgcggtcg atgatttcct ttaagatgcg atcctgcaag
     6241 gcttgttgtg aggccatcac ccgatgaccg taactatttt cttgttgcag gtagtccagg
     6301 acttctggct gagaacgcgt atcgtcccgc agccagtagt aattatcgat gcgcgtatcg
     6361 ccatgaagcg tcatggcgtg gggaatgcgg gcggcttttg gtagcatgtt attgttcttt
     6421 ctggttgaaa catcttataa gggtggcaaa actcaccggg gatgcaagcg aaacagggga
     6481 gtcattgctt agatgatgac aggtaatggc gcggatatcg aatgttatgc agacagagaa
     6541 aatcagcctg ttcaaatggc tgtgcgattc tggatagccc gaaatagtca acttcaggct
     6601 atccagagag cggaattatt ccgccaaagt gcgtttttgc tgttcgagat cgcgttcaat
     6661 gccgtcacga acatcctggg ggattttcag cgcgtcaccc agtgcattca ggtaactgcg
     6721 ttccataaaa tggtcaatat caatagccgc gcaactcagg aaatagattt ccagcgcctc
     6781 ttcttcattg cggaccccgg tagccaggcg ttgtggatcc agcggttgtt cgattgcctg
     6841 ctcaatgagt acacgcccct gctcttccac gccggcttca cgcaattgct ggtcgattgc
     6901 cgcacgttct ttggcatcaa tatgaccatc acttttagcg gcaaagacca gcgcaaggat
     6961 caaacgttct gtacgctcat ccagcggcgt actttgcgcg ccaaactgcg gttcgtcctg
     7021 atgcgccgcg cgaattttat ctttgtattt attccacagc accgtacccg ctaccgctcc
     7081 gccgccaacc agtaacgcgt tggtgccata tttcgtaaga agtttacgtg ctgatttatt
     7141 tgcgaccagc agcccagcca gtccgcctaa tgcgcctggc actaacagtt tgcccaatcc
     7201 ctgatccgca gacgaggaga tagaagaact gctttgccca agcagggatt gcagttgatt
     7261 taaccagtta ctcaataacc atttttagtg cctgtagcat agcggatgag gatgtcagaa
     7321 aatgtatatc gagacaaaag atgcgcaaat aagcggggcg gtaggccgtt attcaaagaa
     7381 attcgcgcca ggtaaggtat ttactgtata tcaggtgata agggtatttt aggtgaaagt
     7441 agtttgtcgt tttgagtggc attgtttgat gctgattgcc cgatgcgacg ctgttgcgtc
     7501 ttctcaggcc tacgattgtg gtgcgttctg gggcggacaa ggcactcgcg ccgcatccgc
     7561 caacggtcaa tcaaattatc agaagccatt aacgccgctg atattccgcc attcccgctt
     7621 tgcagtccac gctgacctgg taatgaatat cggcactttt accacgcacg gttagcggta
     7681 ctgaccattt atcatcttta ccctgaatgt cctgcaaact gacccaagcc acgggatcgg
     7741 cctgaccgac aattttttga tcatctgccc aacgcgccac gcgattttgt tgataatcac
     7801 gttttacgct cgcggcaatt ccggcagcat ccagaccttc acactttggg aaagtgaccg
     7861 acttgctggt ttcattattg gcagcgaaaa ctgatgcgca ggcagaaacc aacaacagcc
     7921 ctaaaaacgc ccctcttttt ttcatgtttt tctccatagc acaatgattc aggagaaagc
     7981 atggtacaaa ttgtcaggag cgcaagttgc ttcaggccgc gtgtgaggca tcttcctctt
     8041 cggattcagc accgacgacc tgtgggtggg gacggtaatt tgccggtttt cagaatggtg
     8101 ctcagcacat ctttttgttc tgccagccat agcgaaaggg cttcacgttg ctcggcttcc
     8161 tttttgctgg taaacgacat tttctcttcg ccctcacgaa tgactacgta tttaacttca
     8221 accgccattt gcagcctctc ataataactg tgattttata cagtatattt cttttcggtt
     8281 gagaaatcaa catcagcaat aaagacacac gcaaacgttt tcgtttatac tgcgcgcgga
     8341 attaatcagg ggatattcgt tatgacgtta ttaggcactg cgctgcgtcc ggcagcaact
     8401 cgcgtgatgt tattaggctc cggtgaactg ggtaaagaag tggcaatcga gtgtcagcgt
     8461 ctcggcgtag aggtgattgc cgtcgatcgc tatgccgacg caccagccat gcatgtcgcg
     8521 catcgctccc atgtcattaa tatgcttgat ggtgatgcat tacgccgtgt ggttgaactg
     8581 gaaaaaccac attatatcgt gccggagatc gaagctattg ccaccgatat gctgatccaa
     8641 cttgaagagg aaggactgaa tgttgtcccc tgcgctcgcg caacgaaatt aacgatgaat
     8701 cgcgagggta tccgtcgcct ggcggcagaa gagctgcagc tgcccacttc cacttatcgt
     8761 tttgccgata gcgaaagcct tttccgcgag gcggttgctg acattggcta tccctgcatt
     8821 gtaaaaccgg tgatgagctc ttccggcaag gggcagacgt ttattcgttc tgcagagcaa
     8881 cttgctcagg catggaagta cgctcagcaa ggcggtcgcg ccggagcggg ccgcgtaatt
     8941 gttgaaggcg tcgttaagtt tgacttcgaa attaccttgc taaccgtcag cgcggtggat
     9001 ggcgtccatt tctgtgcacc ggtaggtcat cgccaggaag atggcgacta ccgtgaatcc
     9061 tggcaaccac agcaaatgag cccgcttgcc cttgaacgtg cgcaggagat tgcccgtaaa
     9121 gtggtgctgg cactgggcgg ttatggtctg tttggtgtcg agctgtttgt ctgtagtgat
     9181 gaggtgattt tcagtgaggt ctcccctcgt ccacatgata ccgggatggt gacgttaatt
     9241 tctcaagatc tttcagagtt tgccctgcat gtacgtgcct tcctcggact tccggttggc
     9301 gggatccgtc agtatggtcc tgcagcttct gccgttattc tgccacaact gaccagtcag
     9361 aatgtcacgt ttgataatgt gcagaatgcc gtaggcgcag atttgcagat tcgtttattt
     9421 ggtaagccgg aaattgatgg cagccgtcgt ctgggtgttg cgctggcgac cgctgagagt
     9481 gttgttgacg ccattgaacg cgcgaagcac gccgccggac aggtaaaagt acagggttaa
     9541 acccggcaaa aaaacgctac aaaaatgccc gatcgtagat cgggcgtttt gacttttaca
     9601 gcttagcgcc ttctacagct tcacgcgcca gcttagtaat gcggtcgtaa tcgcccgctt
     9661 ccagcgcatc tgccggaacc agccaggaac caccgatgca cagcacgctt ttcagcgcca
     9721 ggtagtcacg gtagttagcc ggagaaatac cacccgtcgg gcagaaacgg acctgggaga
     9781 acggacccgc gatcgcctgc agggctttca cgccgccgtt agcttcagcc gggaagaatt
     9841 tgaactcttt caaaccgtag tccataccca gcatcagttc ggaaacagtg ctgatccccg
     9901 gaattagagg aatagtccct tcggtagcag ctttcagcag cggctcggtc agacccgggc
     9961 taattgcgaa ctgtgcaccc gcttcagtga cttctgccag ctgctgtgga ttcagcaccg
    10021 taccggcacc cacaatcgct tcaggcactt ctttggcgat agcacggata gcgtcaactg
    10081 cacactcggt acgcagagtc acttccagaa cgcgcacccc accagcaacc aacgcttttg
    10141 ccatcggcac tgcgtgttcc agttttttta ccacgataac cggtacaacc gggccggtgg
    10201 tcaggattga ttctgcactt gttttccagt ttttcatcag agttttctct cgcctgatta
    10261 taaatttgtc gtcttaaaaa gtgatacagg ttgcgccctg ttcggcaccg gacagttttt
    10321 cacgcaaggc gctgaataat tcacgtcctg tccccacgcg tgacgcgctc aggtcaggaa
    10381 tgtgcggttc gcgagcagcc agttccgctt cgtctaccag cagcgtcagt tcgcctgtct
    10441 gtccattcac acgaatgatg tccccgtcgc gcacttttgc cagcagcccg ccatcgtagg
    10501 cttctggtgt tacgtggata gctgacggca ctttacctga agcgccggag agtcgtccat
    10561 cggtaactaa cgcaattttg aaacaccggt ccaataatac accaagtggc ggcatgagtt
    10621 tatgtaattc tggcattccg ttcgcttttg gcccctgatg acggacaaca acgacacaat
    10681 cgcggtccag caaacccgct tcaaaggccg gcataacgtc atgctggctt tcaaaaacaa
    10741 ccgctggcgc ttcaatcacc tggttctcaa ccggcacggc agaggttttc ataaccgcac
    10801 ggcccaggtt accgcttaac acttttgtcc caccatgatg agagaaaggt tgttcgaagg
    10861 aagcgatcac attgctgtcg agtgattttt ccgccccttc ccgccagtcc agttcaccat
    10921 tattcagcca tggttcaagg gtataacgag acagaccaaa gcctgccacc gtattgacat
    10981 cttcatgcag caggcctgct ttgagcagtt cacgcaccag aaccggtacg ccacctgccg
    11041 cctggaagtg gttaatatcg gccggaccgt tcgggtagag acgtgccatc agcggtacaa
    11101 catcagaaag gtcagagaag tcatcccagt taatctgaat accggccgcg cgcgccatcg
    11161 ccaccaggtg catggtgtgg ttagtggaac caccggtcgc cagcagtgca acgataccgt
    11221 tcaccaccac tttctcatcg atcatcttac cgatcggcat ccattcatta ccattaccgg
    11281 tcatgcgtgt aacctgacgc gcagcggcag cggtcaaagc atcgcgcagc ggagaatccg
    11341 gatgaacaaa agaagagcct ggcgactgca tccccataaa ttccaccacc atctggttgg
    11401 tgttggcagt accgtagaaa gtacatgttc ccggcgcatg gtaagacgcg gcttctgact
    11461 ccagtaaggc catgcggtcc actttacctt cggcataaag ctggcgaata cgcacttttt
    11521 ctttatttgg caaaccgctt gccatcggtc cagacggcac aaacaccgca ggcaaatgac
    11581 caaacgacag ggctgccatc gtcagacccg ggacaatctt gtcgcacaca ccgaggaaca
    11641 gagcaccatc aaacatgtta tgggacagcc ccaccgccgc agacatcgct atcacttcgc
    11701 ggcttagcag cgacaattcc attccatcct gcccctgggt gacaccatca cacatcgccg
    11761 gaacaccgcc cgcaacctga ccaaccgcat tcgcttcatg cagggcttta cgaatgattt
    11821 ctggatagtg ttcataaggc tggtgcgcgg agagcatgtc gttataggag gtgatgatgg
    11881 cgatattgtt acgcaacatg cttttcaaag aggctttgtc ttctggctgg caggcagcga
    11941 aaccgtgtgc caggttaccg catgccaact gcgaacgatg aacggtcgac gttttcgctt
    12001 gttctatccg ggcgagataa gcagagcgag tctcgcgcga acgttcaatg attcgatttg
    12061 ttacgcgtaa caattgtgga ttcataaagg ctcctgaaat tgagttgtca gagcaggatg
    12121 attcacaacg cgtttcattc agaggattta tgagtgaaac gcctgtaacc ggagctcata
    12181 gggcaaaaac gtttcagtca gtgtaataaa aaaagcctcg tgggtgaatc cgcacgaggc
    12241 ctgaaagtgt aaaaattgtt ctacaatctg tgcaagatca tgttaccggt aaaataacca
    12301 taaaggataa gcgcagatat tactcaaact cattccagga acgaccatca cgggtaatca
    12361 tcgccaccga ggcaacgggt ccccaggttc cggcctgata cggtttcggc gcatcattgt
    12421 ccatcgccca cgcctcagta atggagtcta cccatttcca ggcttcttcc acttcatcac
    12481 gacgtacaaa cagtgcctga ataccacgca tggtttccag cagcagacgt tcataggcat
    12541 ccgccagatg cgtctgatta aaggtttctg aatagctcag atccagcttg gtgatttgca
    12601 ggttatgttt gtggtcaagg ccaggaactt tattcagtac ctggatatcc acgccttcat
    12661 caggttgcag acggatagtc agtttattct gcggcagatc ctgccacgac tctttaaaca
    12721 gattcagttc aggtgttttg aaatagacca cgacttcaga acatttggtc ggcagacgtt
    12781 taccagtacg caggtagaat ggcacaccgg cccagcgcca gttatcaatg tcgacgcgga
    12841 tcgccacgaa ggtttctgta ttgctgctct tgttcgcgcc ctcttcttcc agatatcccg
    12901 gcactttttt gccctgggcg aagcccgcag tatattgccc acgtacggtt ttttcgcgta
    12961 cgttggagcg gtcgatgcgg cgcagggact tcagtacttt cactttttca tcgcggatgc
    13021 tgtctgcgct caggtcagat ggcggagaca tcgcaatcat gcagagaatt tgtagcaggt
    13081 ggttctgaat catgtcacgc atctgaccgg ctttatcaaa atagccccag cgcccttcga
    13141 tccccacttc ttctgccacg gtaatctcaa catgatcaat ggtgcgattg tcccagttat
    13201 tcacaaacag ggagttagca aaacgcagcg ccaacaggtt cagcaccgtt tctttaccaa
    13261 gatagtggtc gatacggtaa acctggcact cctcgaagta ttcgccaacc tgatcattga
    13321 tttcctgcga ggtcgccagc gacgtcccca gcggtttctc catgactacg cgtgccggtt
    13381 tagcattcag ttttgcctcg ccaagccctt tgcaaattgc gccaaaagtg ctgggcggca
    13441 tggcaaagta gttaatggtg atacgatttt tttgatccag catcgcgccg agacggttga
    13501 atgcagcagt gtcattgaca tcgagattac aaaaatccag acgtgcactc agggtgtccc
    13561 ataaaccttc atcaatggtt tctttcatga aagtttcgag cgcctcgcgg acaactttgg
    13621 tatatgccgc tttatcccag tcagcacgcc ctacgccgat aatccgggtg tccgggttga
    13681 gctgaccggc tttttccagt tgatacaggg aaggcagcaa tttacgacgc gcaaggtcgc
    13741 ctttcgcgcc gaaaatgacc aggtcacagg cctgggctgt ttgcgttacc gccatgtcat
    13801 tctccttaag ttaactaacc cggtacttaa gccagggtat acttgtaatt ttcttacggt
    13861 gcactgtact gcttttacga gcttgcgaaa actgtaaacg cttatccacc cgtgcgatta
    13921 cgggaaaagc gcgcaaagtg cggcaaaact gataaaaaaa tcatcgtttt ccattcggta
    13981 aaaatctgat actgatcatg ttatgaaaaa aaataacaac ttttttatct gcttttgtca
    14041 ttaacacggc acacaggcgt aatatctgac aaaactgcat ttcgatttct ttcagtgcgg
    14101 aaatcgtcat tacccgtgag tctctttaca tcatgaatat gctggaaaaa atccagtctc
    14161 agctggaaca tttgagcaaa tcagagcgca aagttgccga ggtcattctg gcttcgcccg
    14221 ataacgcgat ccattcgagt attgctgcta tggcactgga agccaatgtt agcgaaccga
    14281 cggtgaatcg tttctgtcgc agcatggaca cgcgcggttt tcctgatttt aaacttcatc
    14341 tggcacagag tctggcgaat ggcactccct atgttaatcg caatgtcaat gaagatgaca
    14401 gcgttgaatc atacacaggg aaaatatttg agtccgcaat ggcaacgctt gatcatgtcc
    14461 gtcattcact ggataaatct gccatcaacc gcgccgtcga cttgctcact caggcaaaaa
    14521 aaatcgcctt tttcggatta ggctcttcag ccgccgttgc ccacgatgcg atgaataagt
    14581 tctttcgttt taatgttccg gtggtgtact ccgatgatat cgtgctgcaa cgcatgagtt
    14641 gtatgaattg tagcgacgga gacgtggtgg tgctgatttc tcacactgga agaacaaaaa
    14701 tctggtcaag ctggcgcagc tggctcgcga aaacgacgca atggtgattg ccctcacctc
    14761 tgcgggtacc ccgctcgccc gggaagcaac gctggcaatt accctcgacg taccggaaga
    14821 tactgacatt tatatgccca tggtttctcg acttgcacag ctgaccgtga tagatgtgct
    14881 ggcgacagga tttactttgc gacgcggtgc aaaattcaga gataacttga agcgggtcaa
    14941 ggaagcgctg aaggaatcgc gttttgataa gcagttactt aatttaagtg acgatcgcta
    15001 aaaacgactg tcactgtcct aatcttatac gacatccgaa tgagattaat ttatcgccat
    15061 cgcggcgtta tttcattcgg atttcatgtt caagcaacac ctggttgttt cagtcaacgg
    15121 agtattacat gtccagaagg cttcgcagaa caaaaatcgt taccacgtta ggcccagcaa
    15181 cagatcgcga taataatctt gaaaaagtta tcgcggcggg tgccaacgtt gtacgtatga
    15241 acttttctca cggctcgcct gaagatcaca aaatgcgcgc ggataaagtt cgtgagattg
    15301 ccgcaaaact ggggcgtcat gtggctattc tgggtgacct ccaggggccc aaaatccgtg
    15361 tatccacctt taaagaaggc aaagttttcc tcaatattgg ggataaattc ctgctcgacg
    15421 ccaacctggg taaaggtgaa ggcgacaaag aaaaagtcgg tatcgactac aaaggcctgc
    15481 ctgctgacgt cgtgcctggt gacatcctgc tgctggacga tggtcgcgtc cagttaaaag
    15541 tactggaagt tcagggcatg aaagtgttca ccgaagtcac cgtcggtggt cccctctcca
    15601 acaataaagg tatcaacaaa cttggcggcg gtttgtcggc tgaagcgctg accgaaaaag
    15661 acaaagcaga cattaagact gcggcgttga ttggcgtaga ttacctggct gtctccttcc
    15721 cacgctgtgg cgaagatctg aactatgccc gtcgcctggc acgcgatgca ggatgtgatg
    15781 cgaaaattgt tgccaaggtt gaacgtgcgg aagccgtttg cagccaggat gcaatggatg
    15841 acatcatcct cgcctctgac gtggtaatgg ttgcacgtgg cgacctcggt gtggaaattg
    15901 gcgacccgga actggtcggc attcagaaag cgttgatccg tcgtgcgcgt cagctaaacc
    15961 gagcggtaat cacggcgacc cagatgatgg agtcaatgat tactaacccg atgccgacgc
    16021 gtgcagaagt catggacgta gcaaacgccg ttctggatgg tactgacgct gtgatgctgt
    16081 ctgcagaaac tgccgcaggg cagtatccgt cagaaactgt tgcagccatg gcgcgcgttt
    16141 gcctgggtgc ggaaaaaatc ccgagcatca acgtttctaa acaccgtctg gacgttcagt
    16201 tcgacaatgt ggaagaagct attgccatgt cagcaatgta cgcagctaac cacctgaaag
    16261 gcgttacggc gattattacc atgaccgaat cgggtcgtac cgcgctgatg acctcccgta
    16321 tcagctctgg tctaccaatt ttcgccatgt cgcgccatga acgtacgctg aacctgactg
    16381 ctctctatcg tggcgttacg ccggtgcact ttgatagcgc taatgacggc gtagcagctg
    16441 ccagcgaagc ggttaatctg ctgcgcgata aaggttactt gatgtctggt gacctggtga
    16501 ttgtcaccca gggcgacgtg atgagtaccg tgggttctac taataccacg cgtattttaa
    16561 cggtagagta atctcacctg ccccggccgc tgatggccgg ggtatttagc aacacataaa
    16621 ttaggactac ttattcaatc caatcattat cacagccccc tgtaaaatga atacagggat
    16681 agcctgaatg gag
//
LOCUS       DADMHM010000072        16690 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.073, whole genome shotgun sequence.
ACCESSION   DADMHM010000072 DADMHM010000000
VERSION     DADMHM010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16690)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16690)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16690
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.073"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(75..1436)
                     /locus_tag="JN125_002108"
     CDS             complement(75..1436)
                     /locus_tag="JN125_002108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase subunit EutB"
                     /protein_id="HAY8871893.1"
                     /translation="MKLKTTLFGNVYQFKDVKEVLAKANELRSGDVLAGVAAASSQER
                     VAAKQVLSEMTLADIRNNPVIAYEDDCVTRLIQDDVNETAYNQIKNWSISELREYVLS
                     DETSVDDIAFTRKGLTSEVVAAVAKICSNADLIYGAKKMPVIKKANTTIGIPGTFSAR
                     LQPNDTRDDVQSIAAQIYEGLSFGVGDAVIGVNPVTDDVENLSRVLDTIYGVIDKFNI
                     PTQGCVLAHVTTQIEAIRRGAPGGLIFQSICGSEKGLKEFGVELAMLDEARAVGAEFN
                     RIAGENCLYFETGQGSALSAGANFGADQVTMEARNYGLARHYDPFIVNTVVGFIGPEY
                     LYNDRQIIRAGLEDHFMGKLSGISMGCDCCYTNHADADQNLNENLMILLATAGCNYIM
                     GMPLGDDIMLNYQTTAFHDTATVRQLLNLRPSPEFERWLESMGIMANGRLTKRAGDPS
                     LFF"
     gene            complement(1448..2851)
                     /gene="eutA"
                     /locus_tag="JN125_002109"
     CDS             complement(1448..2851)
                     /gene="eutA"
                     /locus_tag="JN125_002109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase reactivating factor
                     EutA"
                     /protein_id="HAY8871894.1"
                     /translation="MNTRQLLSVGIDIGTTTTQVIFSHLELVNRAAVSQVPRYEFIKR
                     EISWQSPVFFTPVDKQGGLEEAELKSLILEQYQAAGIAPESVDSGAIIITGESAKTRN
                     ARPAVMALSQSLGDFVVASAGSHLESVIAGHGAGAQTLSEQRLCRVLNIDIGGGTANY
                     ALFDAGKISGTACLNVGGRLLETDSQGRVVYAHKPGQMIVDECFGAGTDVRSLTGAQL
                     VQVTRRMAELIVEVIDGTLSPLAQALMQTGLLPAGVTPEIITLSGGVGECYRHQPADP
                     FCFADIGPLLATALHDHPRLREMNVQFPAQTVRATVIGAGAHTLSLSGSTIWLEGVQL
                     PLRNLPVAIPIDETDLVSAWQQALLQLDLDPKTDAYVLALPASLPVRYAAVLTVINAL
                     VDFVARFPNPHPLLVVAGQDFGKALGMLLRPQLQQLPLAVIDEVIVRAGDYIDIGTPL
                     FGGSVVPVTVKSLAFPS"
     gene            complement(2848..4074)
                     /gene="eutH"
                     /locus_tag="JN125_002110"
     CDS             complement(2848..4074)
                     /gene="eutH"
                     /locus_tag="JN125_002110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization protein EutH"
                     /protein_id="HAY8871895.1"
                     /translation="MGINEIIMYIMMFFMLIAAVDRILSQFGGSASFLGKFGKSIEGS
                     GGQFEEGFMAMGALGLAMVGMTALAPVLAHVLGPVIIPVYEMLGANPSMFAGTLLACD
                     MGGFFLAKELAGGDVAAWLYSGLILGSMMGPTIVFSIPVALGIIEPSDRRYLALGVLA
                     GIVTIPIGCIVGGLVAMYSGVQINGQPVEFTFALILMNMIPVIIVAILVALGLKFIPE
                     KMINGFQIFAKFLVALITLGLAAAVVKFLLGWELIPGLDPIFMAPGDKPGEVMRAIEV
                     IGSISCVLLGAYPMVLLLTRWFEKTLMSVGKVLNMNNIAAAGMVATLANNIPMFGMMK
                     QMDTRGKVINCAFAVSAAFALGDHLGFAAANMNAMIFPMIVGKLIGGVTAIGVAMMLV
                     PKDDATAAKTEAEAQS"
     gene            complement(4291..5478)
                     /gene="eutG"
                     /locus_tag="JN125_002111"
     CDS             complement(4291..5478)
                     /gene="eutG"
                     /locus_tag="JN125_002111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311342.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization ethanol dehydrogenase
                     EutG"
                     /protein_id="HAY8871896.1"
                     /translation="MQNELQTALFQAFDTLNLQRVKTFSVPPVTLCGPGSVSSCGQQA
                     QTRGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQL
                     RESGCDGVIAFGGGSVLDAAKAVALLVTNPDSTLAEMSETSVLQPRLPLIAIPTTAGT
                     GSETTNVTVIIDAVSGRKQVLAHASLMPDVAILDAALTEDVPSHVTAMTGIDALTHAI
                     EAYSALNAIPLTDSLAIGAIAMIGKSLPKAVGYGHDLAARESMLLASCMAGMAFSSAG
                     LGLCHAMAHQPGAALHIPHGLANAMLLPTVMEFNRMVCRERFSQIGRALRTKKSDDRD
                     AINAVSELIAEVGIGKRLGDVGATSAHYGAWAQAALEDICLRSNPRTASLEQIVGLYA
                     AAQ"
     gene            complement(5468..6304)
                     /gene="eutJ"
                     /locus_tag="JN125_002112"
     CDS             complement(5468..6304)
                     /gene="eutJ"
                     /locus_tag="JN125_002112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization protein EutJ"
                     /protein_id="HAY8871897.1"
                     /translation="MAHDEQWLTPRLQTAATLCNQTPAATESPLWLGVDLGTCDVVSM
                     VVDRDGQPVAVCLDWADVVRDGIVWDFFGAVTIVRRHLDTLEQQFGRRFSHAATSFPP
                     GTDPRISINVLESAGLEVSHVLDEPTAVADLLQLDNAGVVDIGGGTTGIAIVKKGKVT
                     YSADEATGGHHISLTLAGNRRISLEEAEQYKRGHGEEIWPTVKPVYEKMADIVARHIE
                     GQGITDLWLAGGSCMQPGVAELFRKQFPALQVHLPQHSLFMTPLAIASSGREKAEGLY
                     AK"
     gene            complement(6315..7718)
                     /locus_tag="JN125_002113"
     CDS             complement(6315..7718)
                     /locus_tag="JN125_002113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase EutE"
                     /protein_id="HAY8871898.1"
                     /translation="MNQQDIEQVVKAVLLKMQSSDTPPAAVHEMGVFASLDDAVAAAK
                     VAQQGLKSVAMRQLAIAAILEAGEKHARDLAELAVSETGMGRVEDKFAKNVAQARGTP
                     GVECLSPQVLTGDNGLTLIENAPWGMVASVTPSTNPAATVINNAISLIAAGNSVIFAP
                     HPAAKKVSQRAITLLNQAIVAAGGPENLLVTVANPDIETAQRLFKFPGIGLLVVTGGE
                     AVVEAARKHTNKRLIAAGAGNPPVVVDETADLARAAQSIVKGASFDNNIICADEKVLI
                     VVDSVADELMRLMEGQHAVKLTAEQAQQLQPVLLKNIDERGKGTVSRDWVGRDAAKIA
                     AAIGLNVPQETRLLFVETTAEHPFAVTELMMPVLPVVRVANVADAIALAVKLEGGCHH
                     TAAMHSRNIENMNQMANAIDTSIFVKNGPCIAGLGLGGEGWTTMTITTPTGEGVTSAR
                     TFVRLRRCVLVDAFRIV"
     gene            complement(7730..8017)
                     /gene="eutN"
                     /locus_tag="JN125_002114"
     CDS             complement(7730..8017)
                     /gene="eutN"
                     /locus_tag="JN125_002114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutN"
                     /protein_id="HAY8871899.1"
                     /translation="MKLAVVTGQIVCTVRHHGLAHDKLLMVEMIDPQGNPDGQCAVAI
                     DNIGAGTGEWVLLVSGSSARQAHKSETSPVDLCVIGIVDEVVSGGQVIFHK"
     gene            complement(8124..8417)
                     /gene="eutM"
                     /locus_tag="JN125_002115"
     CDS             complement(8124..8417)
                     /gene="eutM"
                     /locus_tag="JN125_002115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416952.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutM"
                     /protein_id="HAY8871900.1"
                     /translation="MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAM
                     VRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHGDLEEVFPIGLKGDSSNL"
     gene            complement(8456..9472)
                     /gene="pta"
                     /locus_tag="JN125_002116"
     CDS             complement(8456..9472)
                     /gene="pta"
                     /locus_tag="JN125_002116"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HAY8871901.1"
                     /translation="MIIERCRELALRAPARVVFPDALDQRVLKAAQYLHQQGLATPIL
                     VANPFELRQFALSHGVAMDGLQVIDPHGNLAMREEFAHRWLARAGEKTPPDALEKLTD
                     PLMFAAAMVSAGKADVCIAGNLSSTANVLRAGLRIIGLQPGCKTLSFIFLMLPQYSGP
                     ALGFADCSVVPQPTAAQLADIALASAETWRAITGEEPRVAMLSFSSNGSARHPCVANV
                     QQATEIVRERAPKLVVDGELQFDAAFVPEVAAQKAPASPLQGKANVMVFPSLEAGNIG
                     YNIAQRLGGYRAVGPLIQGLAVPMHDLSRGCSVQDIIELALVAAVPRQTEVNRESSLQ
                     TLVE"
     gene            complement(9462..10271)
                     /gene="eutT"
                     /locus_tag="JN125_002117"
     CDS             complement(9462..10271)
                     /gene="eutT"
                     /locus_tag="JN125_002117"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001425897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization cob(I)yrinic acid
                     a,c-diamide adenosyltransferase EutT"
                     /protein_id="HAY8871902.1"
                     /translation="MKDFITEAWLRANHTLSEGAEIHLPADSRLTPSARELLESRHLR
                     IKFIDEQGRLFVDDEQQQPQPVHGLTSSDEHPQACCELCRQPVAKKPDTLTHLSAEKM
                     VAKSDPRLGFRAVLDSTIALAVWLQIELAEPWQPWLADIRSRLGNIMRADALGEPLGC
                     QAIVGLSDEDLHRLSHQPLRYLDHDHLVPEASHGRDAALLNLLRTKVRETETVAAQVF
                     ITRSFEVLRPDILQALNRLSSTVYVMMILSVTKQPLTVKQIQQRLGERNDY"
     gene            complement(10268..10969)
                     /gene="eutQ"
                     /locus_tag="JN125_002118"
     CDS             complement(10268..10969)
                     /gene="eutQ"
                     /locus_tag="JN125_002118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization acetate kinase EutQ"
                     /protein_id="HAY8871903.1"
                     /translation="MKKLITANDIREAHARGEQAMSVVLRASIITPEAREVADLLGFT
                     ITECDESIPVTASVPASVPADKTESQRIRETIIAQLPEGQFTESLVAQLMEKVMKEKQ
                     SLEQGAMQPSFKSVTGKGGIKVIDGSSVKFGRFDGAEPHCVGLTDLVTGDDGSSMAAG
                     FMQWENAFFPWTLNYDEIDMVLEEELHVRHEGQTMIAKAGDVMFIPKGSSIEFGMTSS
                     VKFLYVAWPANWQSL"
     gene            complement(10944..11423)
                     /gene="eutP"
                     /locus_tag="JN125_002119"
     CDS             complement(10944..11423)
                     /gene="eutP"
                     /locus_tag="JN125_002119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization acetate kinase EutP"
                     /protein_id="HAY8871904.1"
                     /translation="MKRIAFVGSVGAGKTTLFNALQGNYTLARKTQAVEFNDKGDIDT
                     PGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTD
                     MPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQEEAGEKTHHSE"
     gene            complement(11436..11771)
                     /gene="eutS"
                     /locus_tag="JN125_002120"
     CDS             complement(11436..11771)
                     /gene="eutS"
                     /locus_tag="JN125_002120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311351.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutS"
                     /protein_id="HAY8871905.1"
                     /translation="MDKERIIQEFVPGKQVTQAHLIAHPGEELAKKIGVPDAGAIGIM
                     TLTPGETAMIAGDLALKAADVHIGFLDRFSGALVIYCSVGAVEEALSQTVSGLGRLLN
                     YTLCEMTKS"
     gene            complement(12064..14343)
                     /gene="maeB"
                     /locus_tag="JN125_002121"
     CDS             complement(12064..14343)
                     /gene="maeB"
                     /locus_tag="JN125_002121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxaloacetate-decarboxylating
                     malate dehydrogenase"
                     /protein_id="HAY8871906.1"
                     /translation="MDDQLKQSALDFHEFPVPGKIQVSPTKPLATQRDLALAYSPGVA
                     APCLEIEKDPLKAYKYTARGNLVAVISNGTAVLGLGNIGALAGKPVMEGKGVLFKKFA
                     GIDVFDIEVDELDPDKFIEVVAALEPTFGGINLEDIKAPECFYIEQKLRERMNIPVFH
                     DDQHGTAIISTAAILNGLRVVEKNISDVRMVVSGAGAAAIACMNLLVALGLQKHNIVV
                     CDSKGVIYQGREPNMAETKAAYAVVDDGKRTLDDVIEGADIFLGCSGPKVLTQEMVKK
                     MARAPMILALANPEPEILPPLAKEVRPDAIICTGRSDYPNQVNNVLCFPFIFRGALDV
                     GATAINEEMKLAAVRAIAELAHAEQSEVVASAYGDQDLSFGPEYIIPKPFDPRLIVKI
                     APAVAKAAMESGVATRPIADFDVYIDKLTEFVYKTNLFMKPIFSQARKAPKRVVLPEG
                     EEARVLHATQELVTQGLAKPILIGRPNVIEMRIQKLGLQIKAGVDFEIVNNESDPRFK
                     EYWTEYFQIMKRRGVTQEQAQRALISNPTVIGAIMVQRGEADAMICGTVGDYHEHFSV
                     VKNVFGYRDGVHTAGAMNALLLPSGNTFIADTYVNDEPDAEELAEITLMAAETVRRFG
                     IEPRVALLSHSNFGSSDCPSSSKMRQALELVRDRAPDLMIDGEMHGDAALVEAIRNDR
                     MPDSPLKGSANILVMPNMEAARISYNLLRVSSSEGVTVGPVLMGVAKPVHVLTPIASV
                     RRIVNMVALAVVEAQTQPL"
     gene            14632..15582
                     /gene="tal"
                     /locus_tag="JN125_002122"
     CDS             14632..15582
                     /gene="tal"
                     /locus_tag="JN125_002122"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HAY8871907.1"
                     /translation="MNELDGIKQFTTVVADSGDIESIRHYHPQDATTNPSLLLKAAGL
                     SQYEHLIDDAIAWGKKNGKTQEQQVVAACDKLAVNFGAEILKIVPGRVSTEVDARLSF
                     DKEKSIEKARHLVDLYQQQGVEKSRILIKLASTWEGISAAEELEKEGINCNLTLLFSF
                     AQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHHYE
                     TIVMGASFRRTEQILALTGCDRLTIAPNLLKELQEKVSPVVRKLIPPSQTFPRPAPMS
                     EAEFRWEHNQDAMAVEKLSEGIRLFAVDQRKLEDLLAAKL"
     gene            15602..>16690
                     /locus_tag="JN125_002123"
     CDS             15602..>16690
                     /locus_tag="JN125_002123"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416960.1"
                     /note="catalyzes the formation of ribose 5-phosphate and
                     xylulose 5-phosphate from sedoheptulose 7-phosphate and
                     glyceraldehyde 3-phosphate; can transfer ketol groups
                     between several groups; in Escherichia coli there are two
                     tkt genes, tktA expressed during exponential growth and
                     the tktB during stationary phase; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HAY8871908.1"
                     /translation="MSRKDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWNDFL
                     KHNPTDPTWYDRDRFILSNGHASMLLYSLLHLTGYDLPLEELKNFRQLHSKTPGHPEI
                     GYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNQPDHEIVDHFTYVFMGDGCLMEG
                     ISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVIHEIDGH
                     DPQAVKEAILEAQSVKDKPSLIICRTVIGFGSPNKAGKEEAHGAPLGEEEVALARQKL
                     GWHHPPFEIPKEIYHAWDAREKGEKAQQSWNEKFAAYKKAHPQLAEEFTRRMSGGLPK
                     DWEKTTQKYINELQANPAKIATRKASQNT"
BASE COUNT         3746 a         4845 c         4363 g         3736 t
ORIGIN      
        1 tcccattgac gccatcacgc tgcgtacaat ttcttcaatc tgtttttgat ccatgatgtg
       61 ttatctccgc gtcatcagaa gaacagtgac ggatcgcccg cccgtttggt caggcgaccg
      121 tttgccataa tgcccatgct ttccagccag cgttcaaact ctggtgacgg gcgcaggttg
      181 agtaactgac gcacagtggc ggtatcgtgg aatgcggtgg tctggtagtt gagcatgatg
      241 tcatcaccca gcggcatccc catgatgtag ttgcagcctg cggtggcgag caggatcatc
      301 aggttttcgt tgaggttctg gtcagcgtca gcgtggttgg tgtagcagca gtcacagccc
      361 atagagatgc cgctcagctt gcccataaag tgatcttcta agccagcacg gataatctgg
      421 cggtcgttgt agagatactc cggcccaata aagccgacca cggtgttgac gataaacgga
      481 tcgtaatgac gcgccagccc atagttacgt gcttccatcg tcacctggtc agcgccgaag
      541 ttagcgccag cggatagcgc agagccttgt ccggtttcga aatagaggca gttttccccg
      601 gcgatacggt tgaactctgc acccactgcg cgcgcttcgt cgagcatcgc cagttccacg
      661 ccaaactctt tcagcccttt ttcgctgcca cagatactct ggaaaatcag tccgccaggc
      721 gcgccgcgac gaatcgcttc gatctgggtg gtgacgtgcg ccagtacgca gccctgagtt
      781 gggatgttga atttgtcgat cacgccataa atggtatcca gcacgcggct taagttttcc
      841 acgtcgtcag ttaccgggtt gacgccgatc accgcatcgc ccaccccgaa ggaaagccct
      901 tcgtagattt gcgcggcgat actttgcacg tcgtcacgag tgtcatttgg ctgcaaacgg
      961 gcgctgaagg tgcccggaat accgatggtg gtattggcct ttttgattac cggcattttc
     1021 ttcgcgccgt agatcaggtc cgcgttggag caaatcttcg ctaccgccgc gaccacttcc
     1081 gaggtcagcc ctttgcgggt aaaggcaatg tcgtccacgc tagtttcatc gctcagcaca
     1141 tactcacgca gttcgctgat gctccagttt ttaatctggt tgtaggccgt ttcgttaaca
     1201 tcgtcctgaa tcagccgcgt cacgcagtca tcttcatagg caatcaccgg attattgcgg
     1261 atgtccgcta aggtcatttc cgacaacacc tgctttgccg ccacgcgctc ctgtgaactt
     1321 gccgctgcaa cgcctgccag cacatccccc gaacgcagtt cgttggcttt agccagcacc
     1381 tcttttacat ccttaaactg atatacattg ccgaacaatg tggtctttag tttcataagt
     1441 cgttccctca ggaaggaaat gcgagtgatt tcaccgtcac cggcacaacc gatccgccaa
     1501 aaagaggcgt accaatgtcg atatagtccc ccgcgcggac aatcacttcg tcaatgactg
     1561 ccaacgggag ttgttgtagc tgtgggcgca acaacatgcc cagagcttta ccaaagtcct
     1621 gcccggccac caccagcagg ggatgcggat tcggaaaacg cgcgacgaaa tcgaccagcg
     1681 cgttgatgac cgtcagtacc gcggcgtaac gcacaggcag cgaggcggga agcgccagca
     1741 cgtacgcgtc agttttggga tcaagatcca gctgaagcag cgcctgttgc caggcactca
     1801 ccagatccgt ttcatcaatt gggatcgcca ccggcaaatt gcgcagcggc agttgtacgc
     1861 cctccagcca gattgtgctg ccagagagcg aaagggtatg tgcgcccgcg ccaatcaccg
     1921 tggcgcgtac ggtttgcgcc ggaaactgca cattcatctc acgcaggcgc ggatggtcat
     1981 gcagcgccgt tgccagcagc gggccaatat cggcaaaaca gaacggatcg gcgggctggt
     2041 ggcgataaca ttcgcccacg ccgccagaaa gcgtaatgat ttcgggcgta acacctgcgg
     2101 gcagcaaacc ggtttgcatt aatgcctgcg cgagcggcga aagcgttccg tcaatcactt
     2161 cgacaatcag ttctgccatc cgccgggtaa cctgcaccag ctgcgcgccg gtcagcgaac
     2221 ggacgtcagt gcctgcaccg aagcactcat ccacaatcat ctgccccggt ttatgagcgt
     2281 aaaccacgcg cccctggctg tcggtttcca gcaggcgacc accgacgttg aggcaggcag
     2341 tgccgctgat ttttccggca tcgaacaggg cgtagttcgc ggtgccaccg ccgatgtcga
     2401 tattcagtac ccgacacagc cgttgttcag aaagggtttg cgccccggca ccgtgaccgg
     2461 cgatcacgga ttcgaggtgc gacccggcgc tggcgacgac aaaatcgccc agcgactgag
     2521 agagcgccat caccgccggg cgagcattgc gggttttcgc gctttcaccg gtgatgatga
     2581 tggcaccaga atcaacgctt tccggcgcaa tgcccgcagc ctgatattgc tctaaaatca
     2641 gcgacttcag ttccgcttct tctaaaccac cctgtttatc gacaggggta aagaacaccg
     2701 ggctttgcca gctaatttcg cgtttgatga attcgtagcg cggcacctgc gacaccgccg
     2761 cacggttaac cagttccagg tgggagaaaa tcacctgggt ggtggtggtg ccgatatcga
     2821 taccgacgct cagtagctgg cgagtgttca cgattgtgcc tccgcttcgg ttttagctgc
     2881 ggtcgcgtca tcttttggca ccagcatcat cgccacgcca atcgccgtta cgccgccgat
     2941 caacttgccg acaatcatcg ggaagatcat ggcattcatg ttggcagcgg cgaaccctaa
     3001 gtggtcgccc agggcgaaag cagcagaaac ggcgaaggcg cagttgatga ctttgccgcg
     3061 ggtatccatc tgcttcatca tgccgaacat cgggatgttg ttggcaagcg ttgccaccat
     3121 gccggctgcc gcgatgttgt tcatattcag cactttaccg acgctcatca gcgttttttc
     3181 aaaccagcga gtcagcagca gcaccatcgg atacgcccct aacagaacgc aggagataga
     3241 accgataact tcaatggcgc gcatcacctc accgggttta tcgccagggg ccataaagat
     3301 aggatccaga ccggggatca gttcccagcc aagcaggaat ttcactaccg cagcggcaag
     3361 accgagggtg atcaatgcaa cgaggaattt ggcgaagatc tggaagccgt tgatcatttt
     3421 ttccgggatg aatttcagcc ccagcgccac cagaatcgca acaatgatca ccgggatcat
     3481 gttcatcagg atcagggcga aagtgaattc caccggctga ccgttgatct gcacaccgga
     3541 gtacatagca accagaccac caacaataca gccaatcgga atggtcacaa tgcccgccag
     3601 cacgccgagc gccagataac gacggtcaga aggttcgata atgccgagcg ccaccggaat
     3661 ggaaaacaca atcgttggcc ccatcatcga cccaagaatt aacccagagt atagccacgc
     3721 tgctacgtcg ccgcccgcca gctctttggc gaggaagaag ccgcccatat cgcacgccag
     3781 cagcgttccg gcgaacattg acgggtttgc gccgagcatt tcgtaaaccg ggataattac
     3841 cggcccgagt acgtgagcca gtaccggtgc cagcgcggtc ataccgacca tcgccagacc
     3901 cagagcgccc attgccataa agccttcttc gaactgaccg cctgatcctt cgatactttt
     3961 accgaactta ccgaggaaac tagcagaacc gccgaactgc gacaggatcc tgtctacggc
     4021 agctatcagc ataaagaaca tcatgatgta catgatgatt tcgttaattc ccatcgcctt
     4081 tactccctgt tagttgttat ttattggcgg atgcggcgta aacgccttat ccgccctaca
     4141 tgtgcaatcc cgaaggccgg atcagacgcg gcaagcgtcg catccggcaa ttgcaccgcg
     4201 ccactggcgg atgcggcgtg aacgccttat ccgccctaca tgtgcaatcc cgtaggctgg
     4261 ataagacgcg gcaagcgtcg catccggcat ttattgcgcc gctgcgtaca ggccgacaat
     4321 ctgctccagg ctggcggtac gcgggttact gcgcagacaa atatcttcca gcgcggcctg
     4381 cgcccatgcg ccgtaatgcg cagatgtcgc accaacatcg cccagtcgtt taccaatccc
     4441 aacttccgca atcagctcac ttaccgcgtt aatagcgtca cgatcgtcgg attttttagt
     4501 tcgcagtgcc cgaccaatct gactaaagcg ttcacgacaa accatccggt taaattccat
     4561 caccgttggc agcaacatgg cgttcgccag accgtgtgga atatgcagcg ccgcgcccgg
     4621 ctgatgcgcc atcgcgtggc acaacccaag acccgcactg gaaaacgcca ttcccgccat
     4681 acatgaagcc agcaacatgc tctcgcgcgc ggcaaggtcg tgaccgtagc ccaccgcttt
     4741 cggcagcgat ttgccaatca tcgcaatagc gccaatcgcc aggctgtcgg taagcggtat
     4801 agcgttcagg gcgctgtatg cttcaatggc atgggttaac gcatcaatgc cggtcatcgc
     4861 cgtgacatgc gacggcacat cttcggtcaa tgcggcgtcg aggatcgcca catccggcat
     4921 cagcgaggca tgggctaaca cctgcttgcg cccgctcacc gcgtcgataa tcaccgttac
     4981 attggtggtt tcagagccgg ttccggcggt cgttggaatg gcaatcagcg gcaagcgcgg
     5041 ttgcagaacg ctggtttctg acatctctgc cagcgtgcta tccgggttcg tcaccagcaa
     5101 cgccacggct ttcgccgcat ccagcaccga gccgccgcca aatgcgatca ccccatcaca
     5161 gcctgactca cgcaactgcg ccacggctgc acacacgtcg gtgatgcacg gttcgcccac
     5221 cggacatggc cagagcgtca tggcgatgcc tttaacagcc aggctgcgcg tcagcccggc
     5281 ggtcatccct gcctgatgca aaaagctgtc tgccatcacg aacagatgtt tcagcccacg
     5341 cgtttgcgct tgctgtccgc aactgctcac cgagcccgga ccgcaaagcg tcaccggtgg
     5401 aacgctaaat gtttttaccc gttgcagatt cagggtatcg aacgcctgaa agagcgcggt
     5461 ctgcaattca ttttgcatat agcccctccg ctttctctcg cccactactg gcgatcgcca
     5521 gcggggtcat aaacaaactg tgctgcggta aatgcacctg taacgccggg aattgtttgc
     5581 gaaacagttc cgccacgccc ggttgcatac aagagccgcc cgccagccat aaatcagtaa
     5641 tgccctgccc ttcaatatgc cgggcgacaa tgtccgccat tttttcgtac accggtttca
     5701 ccgtaggcca aatctcttca ccgtgaccgc gcttgtactg ctccgcctct tccagcgaaa
     5761 tacggcgatt tccggcgaga gtcagagata tgtgatgtcc gccggttgct tcatccgccg
     5821 agtacgtcac cttgcccttt ttcacgatgg caatgccggt agtgccgccg ccgatatcca
     5881 ctacaccggc gttgtccagt tgcagcagat ccgcaactgc ggttggctca tccagcacat
     5941 ggctcacttc cagtccagca gactccagca cgttgatgga aatacgcggg tccgtacctg
     6001 gaggaaatga agtcgccgca tggctaaaac ggcgaccgaa ttgctgctcg agcgtgtcga
     6061 gatggcgacg aacaatggtg acagcgccga agaaatccca gacgatgccg tcgcggacca
     6121 catcggccca gtcgaggcat accgccaccg gctgaccgtc gcggtcgaca accatcgaca
     6181 ccacatcgca ggtgcccaga tccaccccca gccacagcgg agattccgtc gcggcgggcg
     6241 tctggttaca cagcgttgcc gccgtttgca gacgtggggt gagccattgt tcgtcgtgcg
     6301 ccatctgtta ctccttaaac aatgcgaaac gcatcgacta atacacagcg acgcagacgg
     6361 acaaacgtac gcgcgctggt taccccttca ccggttggcg tggtgatggt catggtggtc
     6421 cagccttccc cgcccagccc cagcccggca atgcacggtc cgttcttaac gaaaatgctg
     6481 gtatcaatag cattcgccat ctggttcatg ttttcgatgt tgcgcgagtg cattgccgcc
     6541 gtgtggtggc aaccgccttc cagtttcacc gccagcgcaa tggcatccgc cacgttggcg
     6601 acgcgcacga cgggcagcac cggcatcatc agttcggtca cggcaaacgg atgttctgca
     6661 gtggtttcca caaacagcaa acgcgtttct tgcggcacgt tcaggccgat tgccgccgcg
     6721 attttcgccg catcgcgacc aacccagtca cggctgacgg tgccttttcc gcgctcgtcg
     6781 atatttttca gcaacaccgg ttgcagctgc tgcgcctgtt ctgcggtcag tttcaccgcg
     6841 tgctggcctt ccatcagacg catcagttca tcggctacgc tatcaacaac aatcagtacc
     6901 ttttcgtcgg cacaaatgat gttgttatcg aaagaagcgc ctttgacgat ggactgagcg
     6961 gcacgggcga ggtcggcggt ttcatccacc actaccggcg ggttgccagc gcctgcggca
     7021 atcagacgtt tattggtgtg tttacgcgcc gcttctacta ccgcttcgcc gccggtcacc
     7081 accagaaggc cgatgcccgg aaacttgaac aaacgctgcg cggtttcgat atccggattt
     7141 gccacagtaa ccagtaagtt ttccggcccg cctgcggcaa caatcgcctg gttgagcagc
     7201 gtgatcgccc gctgggagac ttttttcgcc gccggatgcg gggcaaaaat gacgctgttg
     7261 cccgcggcaa tcaggctgat ggcgttatta attacggttg ccgccgggtt agtggacgga
     7321 gttaccgaag ccaccatgcc ccagggcgcg ttttcaatta aagtcaggcc gttgtcgccg
     7381 gtcagcacct gcggagagag acactcaacg cctggcgtgc cgcgcgcctg agcgacgttt
     7441 ttggcaaatt tatcttcaac gcggcccatg ccggtttcac tgacggcaag ttccgctaaa
     7501 tctctggcgt gtttttcgcc tgcctcaaga atggcagcaa tggctaactg gcgcattgcc
     7561 acgcttttta acccttgctg ggcgactttg gctgccgcaa cggcgtcatc cagggacgcg
     7621 aaaacgccca tctcatgaac ggcggcgggc ggcgtgtcac tgctttgcat tttcagcagt
     7681 accgctttca ccacctgttc aatatcctgt tgattcatga tgttctgcct tatttgtgga
     7741 aaattacctg accgccagac accacctcat cgacaatgcc aatcacgcac agatcgaccg
     7801 gtgacgtttc gcttttatgc gcctggcggg cggaactgcc actcaccagt aacacccact
     7861 ccccggttcc cgcaccaata ttgtcgatgg cgacggcgca ttgcccgtca ggattacctt
     7921 gtggatcaat catttccacc atcagcaatt tgtcatgcgc cagtccgtga tggcgtacgg
     7981 tacaaacaat ttgtccagtg acgactgcca gtttcatacc cgcctccgtg gcgtatttca
     8041 ggtaaaagct ccccctaccc tccgcagaag gtaaaatgaa aaaggagaga gcgtgacgcc
     8101 cgaatcgacg tcacacaggg tgattacagg ttgctgctat cgcctttcag gccgatcggg
     8161 aagacttctt ccaggtcgcc gtgcggacgc gggataacgt gtacagatac cagctcgccg
     8221 atacgctgtg ccgctgcggc acctgcatcg gtcgcggctt tacaggctgc aacatcacca
     8281 cgaaccatgg cagtacacag gccgccgcca atctgcttaa caccaaccag cttgacgcgc
     8341 gcagctttca ccatcgcgtc agaagcctca atcagtgcaa ccaggccccg ggtttcgatc
     8401 attcctaatg cttccattgt gctttcctct ttatcagggt ccagaacggg accgttcatt
     8461 caaccagtgt ttgtaaactg ctttcgcggt tcacttctgt ctgacgcggc acagctgcca
     8521 ccagcgccag ctcgataatg tcctgcacgc tacaaccacg agagagatcg tgcatcggca
     8581 cggcaagtcc ttgtatcagt ggcccgacgg cacgatatcc gccgagtcgt tgtgcgatgt
     8641 tgtaaccaat atttccggct tccagcgacg gaaaaaccat cacattggcc ttgccctgta
     8701 gcgggctggc aggcgctttt tgcgccgcca cttccggcac gaaggcggcg tcaaactgta
     8761 actcgccatc caccaccagc tttggtgcgc gctcacggac gatttctgtc gcctgctgga
     8821 cgttagcaac acaggggtga cgggcgctac cattgctgga aaacgacagc atcgccacgc
     8881 gcggctcttc tccggtgatg gcgcgccagg tttcggcact ggcaagcgcg atatccgcca
     8941 gctgcgccgc cgtcggctgt ggcaccacgc tgcaatcggc aaagcccaac gccgggccgc
     9001 tgtactgtgg caacatcagg aaaatgaaag agagcgtttt acagcctggc tgcaagccga
     9061 taatgcgtaa tccggcacgc agcacatttg ccgtggaaga gaggttgccc gcgatacaga
     9121 catccgcttt accggcgctg accattgctg cggcgaacat cagagggtcg gtaagttttt
     9181 ccagcgcatc cggcggcgtt ttttcgcccg cgcgggccag ccagcgatga gcaaattctt
     9241 cccgcattgc gaggttgcca tgcggatcaa tcacctgtag cccgtccatc gccacgccgt
     9301 gactgagcgc aaactgacga agttcaaacg gattggcgac cagaatgggc gttgccagac
     9361 cttgttgatg taaatattgc gcggctttca gcacacgttg gtctaacgca tccggaaaaa
     9421 ccactctggc gggcgctcgc aacgccagtt cacgacaacg ttcaataatc attgcgttcc
     9481 cccagtcgtt gttggatctg cttcaccgtt agcggctgct tcgttacgct caggatcatc
     9541 atcacgtaga ccgtgctgga aaggcggttc agcgcctgca aaatgtccgg gcgtaatact
     9601 tcaaagctgc gggtgataaa gacctgcgcc gctacggttt cggtttcccg cactttggtg
     9661 cgtagcagat tgagcaacgc agcatcgcgc ccgtggctgg cttccggcac cagatgatcg
     9721 tggtcgagat agcgcagcgg ctgatgagaa agccgatgca gatcttcgtc agaaagcccg
     9781 acaatcgcct ggcagcccag cggttccccc agcgcatcgg cgcgcataat gttgccaaga
     9841 cgcgaacgga tatccgccag ccacggctgc cacggttccg ccagttcaat ttgcagccac
     9901 actgccagcg caatggtgct gtcgagaacc gcgcgaaaac ccagacgcgg atcgcttttg
     9961 gcgaccattt tttccgccga caggtgagtc agcgtatccg gcttttttgc caccggctgg
    10021 cggcacagtt cgcagcacgc ctgcggatgt tcatcgctac tggtcagccc atgaacgggc
    10081 tgcggctgct gctgttcatc gtcaacaaac aggcggccct gctcgtcaat aaacttgatg
    10141 cgcagatggc ggctttccag caactcccgg gcagagggcg tcaggcgact gtccgcaggg
    10201 agatggatct ctgcgccttc gctgagcgta tggttcgctc ttagccatgc ttcggtgatg
    10261 aaatctttca tagggattgc cagttagccg gccaggcgac atacaggaat ttcacgctgg
    10321 atgtcatacc aaattcgatg ctggagcctt tcgggataaa catcacgtcg cctgctttgg
    10381 cgatcatggt ttggccttcg tggcgaacat gcagctcctc ttccagcacc atgtcgattt
    10441 cgtcgtagtt cagggtccac gggaagaatg cgttctccca ctgcataaaa ccggcggcca
    10501 tgctgctgcc gtcgtctccg gtcacaagat cagtcaagcc cacgcaatgc ggctctgcgc
    10561 cgtcgaaacg accaaacttg acgctgctgc catcaatcac tttgatgccg cctttgccgg
    10621 tcaccgattt gaagctcggc tgcattgcgc cctgctccag cgactgtttt tccttcatca
    10681 ctttttccat cagctgtgcg accaggcttt cggtaaactg gccttccggc agctgggcaa
    10741 tgatggtttc gcggatgcgc tggctttcgg ttttgtcggc tggcacgctg gcgggcacgg
    10801 acgccgttac cgggatcgat tcatcacatt cggtgatggt aaaacccagt agatccgcca
    10861 cttcacgggc ttccggggta ataatgctgg cgcgcagaac cacggacatt gcctgttcgc
    10921 cgcgcgcgtg tgcttcacga atatcattcg ctgtgatgag ttttttcacc tgcttcctcc
    10981 tgtttggtga gagatgccag ataatccacc agttgctgca cgctttgcgg gtcgtggctg
    11041 tttagctcga aaatcggctc ttcgaaaccc gtctcaagca ataactttcg cgttgcggcg
    11101 acgtcagcat ctggcatgtc cgttttactg atgacggcga tttgccgttt gctgacgcca
    11161 atatccagca acccggcagg caaccgactt tccgggtcat ttgcgccatg gacatagatc
    11221 agcatgtcta catcctgtag cgtggtaatt aaggcgtgat accagcgggg atggctaaaa
    11281 tattcacccg gcgtatcaat atcgccctta tcattaaatt ccacggcctg tgtttttctg
    11341 gcgagggtat aattcccctg caacgcatta aataacgttg tttttcctgc cccgacgcta
    11401 cccacaaacg caattcgttt catgaatgcc tcgtattaac ttttggtcat ttcacaaagc
    11461 gtataattta ataagcgacc taaaccgctg acggtttgtg ataacgcttc ttctactgcg
    11521 cccaccgagc aataaatcac caatgcaccg ctgaagcggt cgagaaaacc gatatgcaca
    11581 tcagcggctt tcagcgctaa atcaccggcg atcatcgccg tttcgccggg agttagcgtc
    11641 ataatgccaa ttgcgcccgc atccggaacg ccgattttct tcgccagttc ctcaccggga
    11701 tgcgcgatga gatgcgcctg tgtgacctgt ttgccgggca caaattcctg aatgatgcgt
    11761 tctttatcca tgagtcgccg cctgtgaaaa actttcgtgt atcgtgacaa tttttcgtca
    11821 gagtaaataa caaaattcgg caagcgcgtt taaaaggtga ggtagatcac taagaatgga
    11881 gagatattcg ctgtggtgca taaactttca tatgcaacgc atgaatataa ataaaataat
    11941 atcgagatat tatatagact gcttttttta ttattcgcaa actcagtaat aagctttact
    12001 aatatattgc agccaaaccg cttaccctga atattcaggg taagcgtgag agttaaaaaa
    12061 gaattacagc ggttgggttt gcgcttcaac cacggccagc gccaccatgt tgacgatacg
    12121 acgcaccgat gcgatcggcg ttaacacgtg aaccggtttc gccacgccca tcagcaccgg
    12181 accgacagtc acaccttccg agctggaaac gcgcagtaag ttgtaactaa tgcgggcagc
    12241 ttccatgttc ggcatcacca gaatattggc agaacctttc aaagggctgt ccggcatacg
    12301 gtcgttgcga atcgcttcca ccagcgctgc atcgccgtgc atttcaccat caatcatcag
    12361 atctggcgca cgatccctga ccagttccag cgcctgacgc attttgctcg acgacgggca
    12421 gtcagaagaa ccaaagttgg agtgcgacaa cagagcaacg cgcggctcaa taccaaaacg
    12481 acggacagtt tctgccgcca tcaaggtgat ctccgccagc tcttctgcgt ctggttcgtc
    12541 attgacgtag gtatcggcaa taaaggtgtt accactcggc agcagcaacg cgttcattgc
    12601 acctgcggtg tgaacgccat cgcgataacc aaagacattt ttcaccacgc taaaatgttc
    12661 atgataatcg cccaccgtac cgcagatcat tgcatcggct tccccacgct gaaccatgat
    12721 cgcgccgatc actgtcgggt tactgatcag cgcccgctgc gcctgttcct gagtgacacc
    12781 gcgacgcttc atgatctgga agtattcggt ccagtactct ttaaagcgcg gatcggattc
    12841 gttattgacg atctcaaaat caacgcccgc tttgatctgc aagcccagtt tctgaatgcg
    12901 catttcgatc acgttcggac gaccgataag gatcggtttc gccagtccct gcgttaccag
    12961 ttcctgagtg gcatgcagaa cgcgcgcctc ttccccttct ggcagaacaa cgcgcttcgg
    13021 cgctttgcga gcctgggaga aaatcggctt cataaacagg ttggttttgt aaacgaactc
    13081 agtcagcttg tcgatgtaga cgtcgaaatc agcaatcgga cgcgtcgcca cgcccgactc
    13141 catcgcggct ttagcgaccg caggagcgat cttaacgatc aagcgcggat caaacggttt
    13201 tggaatgatg tattccggac caaagctcag atcctgatcg ccatacgctg aagccaccac
    13261 ttcgctctgt tccgcatggg cgagttctgc aatcgcacgt accgccgcca gtttcatctc
    13321 ttcgttgatg gcggttgcgc caacgtccag cgcgccacgg aagatgaacg ggaagcacag
    13381 gacgttgttc acctggttcg gatagtcaga acgaccggtg caaatgatgg catccggacg
    13441 cacttctttc gccagcggcg gcagaatttc cggttccggg ttcgccagcg ccaggatcat
    13501 tggcgcacga gccattttct tcaccatttc ctgggtcagc actttcgggc cggaacatcc
    13561 gaggaaaata tccgcgcctt caatcacatc atcgagggta cgtttgccgt catccaccac
    13621 cgcatatgcg gctttggttt ccgccatgtt tggctcacgg ccctgataga taacgccttt
    13681 tgaatcgcaa accacgatgt tatgtttttg cagacccagc gctaccagca ggttcataca
    13741 ggcgattgct gcggcacccg cgccggaaac caccatccgc acgtcggaga tgtttttctc
    13801 caccacgcgc aagccgttga ggatggcggc agtgctgatg attgccgtgc cgtgctgatc
    13861 gtcgtggaat accggaatat tcatccgctc gcgcagtttc tgttcaatat agaaacattc
    13921 tggcgcttta atgtcttcga ggttgattcc gccgaaggtc ggttcgagcg cagcgacaac
    13981 ttcaataaat ttgtccgggt cgagttcatc aacttcaatg tcaaatacat caatcccggc
    14041 gaatttctta aacagaacgc ccttgccttc catcaccggt ttgccagcca gcgcgccaat
    14101 gttgcctaac cccagcaccg ccgtaccgtt agagatcacc gccaccaggt taccgcgcgc
    14161 ggtatatttg taggctttta acgggtcttt ttcgatttca agacaaggtg cggcaacgcc
    14221 tggtgagtag gccagcgcca gatcgcgctg cgttgccaga ggcttggttg gagaaacctg
    14281 gattttccct ggaactggaa attcatggaa atcaagtgca ctttgtttta actggtcatc
    14341 catttggttg ttcctttcac gtaacgttca caaataaagt gtgtgggcaa cagcccctgc
    14401 ccacaacgtg gcgcacatta ttaccccgcc ggagtctaca gactttgagc aagtccaaac
    14461 tctcaccatt aatataatgt tttggtaata atcctataac actgatgtta cctgcttaat
    14521 ccagcaatac catgcctgtc tgctatgctt ttttgatgcg tttagcgaaa tttctcagaa
    14581 gtgtgaatta acgcactcat ctaacacttt acttttcaag gagtatttcc tatgaacgag
    14641 ttagacggca tcaaacagtt caccactgtc gtggcagaca gcggcgatat tgagtccatt
    14701 cgccattatc atccccagga tgccaccacc aatccttcgc tgttgctcaa ggctgccgga
    14761 ttatcacaat atgagcattt aatagacgat gctatcgcct ggggtaaaaa aaatggcaag
    14821 acccaggaac aacaggtggt cgcagcgtgt gacaaactgg cggtcaattt cggtgctgaa
    14881 attctcaaaa tcgtacccgg tcgcgtgtca acagaagttg atgcacgcct ctcttttgat
    14941 aaagaaaaga gtattgagaa ggcgcgccat ctggtggact tgtatcagca acaaggcgtt
    15001 gagaaatcac gcattctgat caaactggct tcgacctggg aaggaattag cgcggcagaa
    15061 gagctggaaa aagaaggtat taactgcaac ctgacgctgc tgttttcttt tgcccaggcg
    15121 cgggcctgtg cggaagcagg cgtttttctg atttcgccgt ttgtcgggcg tatttatgac
    15181 tggtatcagg cacgcaagcc gatggacccg tatgtggtgg aagaagatcc gggcgttaaa
    15241 tcggtgcgca atatctacga ctactataag caacaccact atgaaaccat tgtgatgggc
    15301 gcgagcttcc gtcgcaccga acaaatcctc gccttaaccg gctgcgatcg actgactatc
    15361 gcaccgaatt tgctgaagga gctgcaggaa aaagtttcgc cagtggtacg taaattaatc
    15421 ccaccttctc agacgttccc acgcccagct cccatgagcg aagcggagtt ccgttgggag
    15481 cacaatcagg atgcgatggc ggtagaaaaa ctgtctgaag gcattcgtct gttcgccgtt
    15541 gatcaacgca aactggaaga tcttcttgcc gccaaactat aaaccagcca cggagtgtta
    15601 tatgtcccga aaagaccttg ccaatgcgat tcgcgcactc agtatggatg cggtacaaaa
    15661 agccaactct ggtcatcccg gcgcgccgat gggcatggct gatattgccg aagtgctgtg
    15721 gaacgatttt cttaaacata accctaccga cccaacctgg tatgatcgcg accgctttat
    15781 tctttccaac ggtcacgcgt cgatgctgct ctacagtttg ctgcatctga ccggttacga
    15841 cctgccgctg gaagagctga agaacttccg tcagttgcat tcgaaaaccc caggccaccc
    15901 ggagattggt tatacgcccg gtgttgaaac caccaccggt ccacttggac aaggtttggc
    15961 gaacgccgtc ggactggcga tagcagagcg tacactggcg gcgcagttta atcagccgga
    16021 tcatgaaatt gtcgatcact tcacctatgt gtttatgggc gacggctgcc tgatggaagg
    16081 tatttcccac gaagtctgtt cgctggcggg cacgctagga ctgggcaagc tgattggttt
    16141 ttacgatcac aacggtattt cgattgatgg agaaaccgaa ggctggttta ccgacgatac
    16201 ggcaaaacgt tttgaagcct atcactggca tgtgatccat gaaatcgacg gtcacgatcc
    16261 gcaggcggtg aaggaagcga tccttgaagc gcaaagcgtg aaagataagc cgtcgctgat
    16321 tatctgccgt acggtgattg gctttggttc gccgaataaa gcaggtaagg aagaggcgca
    16381 cggcgcacca ctgggggaag aagaagtggc gctggcacgg caaaaactgg gctggcacca
    16441 tccgccattt gagatcccta aagagattta tcacgcctgg gatgcccgtg aaaaaggcga
    16501 aaaagcgcag cagagctgga atgagaagtt tgccgcctat aaaaaggctc atccgcaact
    16561 ggcagaagag tttacccgac ggatgagcgg tggtttaccg aaggactggg agaaaacgac
    16621 tcagaaatat atcaatgagt tacaggcaaa tccggcgaaa atcgctaccc gtaaggcttc
    16681 gcaaaatacg
//
LOCUS       DADMHM010000073        16643 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.074, whole genome shotgun sequence.
ACCESSION   DADMHM010000073 DADMHM010000000
VERSION     DADMHM010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16643)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16643)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16643
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.074"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(206..952)
                     /gene="cutC"
                     /locus_tag="JN125_002124"
     CDS             complement(206..952)
                     /gene="cutC"
                     /locus_tag="JN125_002124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310611.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis protein CutC"
                     /protein_id="HAY8871909.1"
                     /translation="MALLEICCYSMECALTAQQNGADRVELCAAPKEGGLTPSLGVLK
                     SVRQWVTIPVHPIIRPRGGDFCYSDGEFAAILEDVLTVRELGFPGLVTGVLDVDGNVD
                     MPRMEKIMAAAGPLAVTFHRAFDMCANPLNTLSNLAELGIARVLTSGQKSDALQGLSK
                     IMELIAHRDAPIIMAGAGVRAENLHHFLDAGVLEVHSSAGAWQASPMRYRNQGLSMSS
                     DAHADEYSRYVVDGAAVAEMKGIIERHQAK"
     gene            complement(966..1532)
                     /locus_tag="JN125_002125"
     CDS             complement(966..1532)
                     /locus_tag="JN125_002125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707763.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HAY8871910.1"
                     /translation="MANWQSIDELQDIASDLPRFTHALDELSRRLGLDITPLTADHIS
                     LRCHQNVTAERWRRGFEQCGELLSENMINGRPICLFKLHEPVQVAHWQFSIVELPWPG
                     EKRYPHEGWEHIEIVLPGDPETLNARALALLSDEGLSLPGISVKTSSPKGEYERLPNP
                     TLAVTDGKTTIKFHPWSIEEIVASEQSA"
     gene            1748..3481
                     /gene="argS"
                     /locus_tag="JN125_002126"
     CDS             1748..3481
                     /gene="argS"
                     /locus_tag="JN125_002126"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001025321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HAY8871911.1"
                     /translation="MNIQALLSEKVRQAMIAAGAPADCEPQVRQSAKVQFGDYQANGM
                     MAVAKKLGMAPRQLAEQVLTHLDLNGIASKVEIAGPGFINIFLDPAFLAEHVQQALAS
                     DRLGVSTPEKQTIVVDYSAPNVAKEMHVGHLRSTIIGDAAVRTLEFLGHKVIRANHVG
                     DWGTQFGMLIAWLEKQQQENAGEMELADLEGFYRDAKKHYDEDEEFAERARNYVVKLQ
                     SGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMGESLYNPMLPGIVADLKAKG
                     LAVESEGATVVFLDEFKNKEGEPMGVIIQKKDGGYLYTTTDIACAKYRYETLHADRVL
                     YYIDSRQHQHLMQAWAIVRKAGYVPESVPLEHHMFGMMLGKDGKPFKTRAGGTVKLAD
                     LLDEALERARRLVAEKNPDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNML
                     AFEGNTAPYMQYAYTRVLSVFRKAEINEEQLAAAPVIIREDREAQLAARLLQFEETLT
                     VVAREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENEEVRNSRLKLAQLTAKTLKLGL
                     DTLGIETVERM"
     gene            3658..4146
                     /locus_tag="JN125_002127"
                     /pseudo
     CDS             3658..4146
                     /locus_tag="JN125_002127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416391.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme inhibitor LprI family protein"
     gene            complement(4266..4658)
                     /locus_tag="JN125_002128"
     CDS             complement(4266..4658)
                     /locus_tag="JN125_002128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlhE"
                     /protein_id="HAY8871912.1"
                     /translation="MRTLLAILLFPLLVQAAGEGMWQASSVGITLNHRGESMSSAPLS
                     TRQPASGLMTLVAWRYQLIGPTPSGLRVRLCSQSRCVELEGQSGTTVAFSGIAAAEPL
                     RFIWEVPGGGRLIPPLKVQRNEVIVNYR"
     gene            complement(4658..6734)
                     /gene="flhA"
                     /locus_tag="JN125_002129"
                     /pseudo
     CDS             complement(4658..6734)
                     /gene="flhA"
                     /locus_tag="JN125_002129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416393.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
     gene            complement(6727..7830)
                     /gene="flhB"
                     /locus_tag="JN125_002130"
                     /pseudo
     CDS             complement(6727..7830)
                     /gene="flhB"
                     /locus_tag="JN125_002130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416394.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FlhB"
     gene            complement(7913..8557)
                     /gene="cheZ"
                     /locus_tag="JN125_002131"
     CDS             complement(7913..8557)
                     /gene="cheZ"
                     /locus_tag="JN125_002131"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein phosphatase CheZ"
                     /protein_id="HAY8871913.1"
                     /translation="MMQPSIKPADEHSAGDIIARIGSLTRMLRDSLRELGLDQAIAEA
                     AEAIPDARDRLYYVVQMTAQAAERALNSVEASQPHQDQMEKSAKALTQRWDDWFADPI
                     DLADARELVTDTRQFLADVPAHTSFTNAQLLEIMMAQDFQDLTGQVIKRMMDVIQEIE
                     RQLLMVLLENIPEQESRPKRENQSLLNGPQVDTSKAGVVASQDLVDDLLDSLGF"
     gene            complement(8568..8957)
                     /gene="cheY"
                     /locus_tag="JN125_002132"
     CDS             complement(8568..8957)
                     /gene="cheY"
                     /locus_tag="JN125_002132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheY"
                     /protein_id="HAY8871914.1"
                     /translation="MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALN
                     KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAG
                     ASGYVVKPFTAATLEEKLNKIFDKLDM"
     gene            complement(8972..10021)
                     /locus_tag="JN125_002133"
     CDS             complement(8972..10021)
                     /locus_tag="JN125_002133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000036372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator protein-glutamate
                     methylesterase"
                     /protein_id="HAY8871915.1"
                     /translation="MSKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDL
                     IKKFNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAI
                     DFVTKPQLGIREGMLAYSEMIAEKVRTAAKASLAAHKPLSAPTTLKAGPLLSSEKLIA
                     IGASTGGTEAIRHVLQPLPLSSPALLITQHMPPGFTRSFADRLNKLCQIGVKEAEDGE
                     RVLPGHAYIAQGDRHMELARSGANYQIKIHDGPAVNRHRPSVDVLFHSVAKQAGRNAV
                     GVILTGMGNDGAVGMLAMRQAGAWTLAQNEASCVVFGMPREAINMGGVCEVVDLSQVS
                     QQMLAKISAGQAIRI"
     gene            complement(10024..10884)
                     /gene="cheR"
                     /locus_tag="JN125_002134"
     CDS             complement(10024..10884)
                     /gene="cheR"
                     /locus_tag="JN125_002134"
                     /EC_number="2.1.1.80"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-glutamate O-methyltransferase CheR"
                     /protein_id="HAY8871916.1"
                     /translation="MTSSLPCGQTSLLLQMTERLALSDAHFRRISQLIYQRAGIVLAD
                     HKRDMVYNRLVRRLRSLGLTDFGHYLNLLESNQHSGEWQAFINSLTTNLTAFFREAHH
                     FPLLADHARRRSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVL
                     EKARSGIYRHEELKNLTPQQLQRYFMRGTGPHEGLVRVRQELANYVDFAPLNLLAKQY
                     TVPGPFDAIFCRNVMIYFDQNTQQEILRRFVPLLKPDGLLFAGHSENFSHLERRFTLR
                     GQTVYALSKD"
     gene            complement(10903..12504)
                     /gene="tap"
                     /locus_tag="JN125_002135"
     CDS             complement(10903..12504)
                     /gene="tap"
                     /locus_tag="JN125_002135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein IV"
                     /protein_id="HAY8871917.1"
                     /translation="MFNRIRISTTLFLILILCGILQIGSNGMSFWAFRDDLQRLNQVE
                     QSNQQRAALAQTRAIMLQASTALNKAGTLTALSYPADDIKTLMTTARASLTQSTTLFK
                     SFMAMTAGNEHVRALQKETEKSFARWHNDLEHQATWLESNQLSDFLTAPVQGSQNAFD
                     VNFEAWQLEINHVLEAASAQSQRNYQISALVFISMIIVAAIYISSALWWTRKMIVQPL
                     AIIGSHFDSIAAGNLARPIAVYGRNEITAIFASLKTMQQALRGTVSDVRKGSHEMHIG
                     IAEIVAGNNDLSSRTEQQAASLAQTAASMEQLTATVGQNADNARQASELAKNAATTAQ
                     AGGVQVSTMTHTMQEIATSSQKIGDIISVIDGIAFQTNILALNAAVEAARAGEQGRGF
                     AVVAGEVRNLASRSAQAAKEIKGLIEESVNRVQQGSKLVNNAAATMTDIVSSVTRVND
                     IMGEIASASEEQRRGIEQVAQAVSQMDQVTQQNASLVEEAAVATEQLANQADHLSSRV
                     AVFTLEEHEVARHESAQLQIAPVVS"
     gene            complement(12550..13968)
                     /locus_tag="JN125_002136"
     CDS             complement(12550..13968)
                     /locus_tag="JN125_002136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HAY8871918.1"
                     /translation="MINRIRVVTLLVMVLGVFALLQLISGSLFFSSLHHSQKSFVVSN
                     QLREQQGELTSTWDLMLQTRINLSRSAVRMMMDSSNQQSNAKVELLDSARKTLAQAAT
                     HYKKFKSMAPLPEMVATSRNIDEKYKNYYTALTELIDYLDYGNTGAYFAQPTQGMQNI
                     DGRSEMGDLAQSVSHMQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASA
                     LEETAASMEQLTATVKQNADNARQASQLAQSASDTAQHGGKVVDGVVKTMHEIADSSK
                     KIADIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRNLASRSVQAAKEI
                     KALIEDSVARVDTGSVLVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIVQVAL
                     AVSEMDRVTQQNASLVQESAAAAAALEEQASRLTQAVSTFRLAASPLTNKPQTPSRPA
                     SEQPPAQPRLRIAEQDPNWETF"
     gene            complement(14113..14616)
                     /gene="cheW"
                     /locus_tag="JN125_002137"
     CDS             complement(14113..14616)
                     /gene="cheW"
                     /locus_tag="JN125_002137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HAY8871919.1"
                     /translation="MTGMTNVTKLASEPSGQEFLVFTLGDEEYGIDILKVQEIRGYDQ
                     VTRIANTPAFIKGVTNLRGVIVLIVDLRIKFSQVDVDYNDNTVVIVLNLGQRVVGIVV
                     DGVSDVLSLTAEQIRPAPEFAVTLSTEYLTGLGALGDRMLILVNIEKLLNSEEMALLD
                     SAASEVA"
     gene            complement(14637..16601)
                     /gene="cheA"
                     /locus_tag="JN125_002138"
     CDS             complement(14637..16601)
                     /gene="cheA"
                     /locus_tag="JN125_002138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheA"
                     /protein_id="HAY8871920.1"
                     /translation="MSMDISDFYQTFFDEADELLADMEQHLLVLQPEAPDAEQLNAIF
                     RAVHSIKGGAGTFGFSVLQETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQEQL
                     DAYKQSQEPDAASFDYICQALRQLALEAKGETPSAVTRLSVVAKSEPQDEQSRSQSPR
                     RIILSRLKAGEVDLLEEELGHLITLTDVVKGADSLSAILPGDIAEDDITAVLCFVIEA
                     DQITFETVEVSPKISTPPVLKLAAEQAPTGRVEREKTTRSSESTSIRVAVEKVDQLIN
                     LVGELVITQSMLAQRSSELDPVNHGDLITSMGQLQRNARDLQESVMSIRMMPMEYVFS
                     RYPRLVRDLAGKLGKQVELTLVGSSTELDKSLIERIIDPLTHLVRNSLDHGIELPEKR
                     LAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGLTVSENMSDDEV
                     AMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGTGTTIRILLPLT
                     LAILDGMSVRVADEVFILPLNAVMESLQPREADLHPLAGGERVLEVRGEYLPIVELWK
                     VFNVAGAKTEATQGIVVILQSGGRRYALLVDQLIGQHQVVVKNLESNYRKVPGISAAT
                     ILGDGSVALIVDVSALQAINREQRMANTAA"
BASE COUNT         3959 a         4640 c         4053 g         3991 t
ORIGIN      
        1 cagttttagc aatttaaacc ccataattaa tgtgaatata taaaatattt ttagcacaac
       61 gctatgttca ctgtcacccg ctcaacagat cacgtttatc gtacgttttt tatactgctc
      121 agggataaaa aaaggcccct gttgaaattg caggggcctg gtacgagcaa gcatcatatt
      181 gggcgacatg atgcaacggt aaaaatcatt tggcctgatg gcgttcaatg attcctttca
      241 tttcagcaac cgccgccccg tctacgacat aacgcgaata ctcgtccgcg tgtgcatctg
      301 atgacatgga caatccttga ttacgataac gcatcggtga agcttgccac gctcccgcgg
      361 agctatggac ttccagcact ccggcatcga ggaagtggtg caggttttct gcacggactc
      421 ctgctccggc cataatgatt ggagcatcac gatgggcaat aagttccata atttttgata
      481 aaccttgcag tgcatctgat ttttgccctg atgtcagcac ccgggcgatg cccaattccg
      541 caagattact gagtgtattt aaagggttag cgcacatatc gaaggcgcga tgaaaagtca
      601 ctgccagcgg accggcagca gccattattt tttccattcg tggcatatcg acattcccgt
      661 caacatcgag cacgcccgtc accagtccag gaaaacctaa ttcgcggact gtgagcacat
      721 cctcaagaat ggcggcaaac tcaccgtcgc tgtagcaaaa atcaccaccg cgtgggcgga
      781 taatcggatg cacagggatc gtcacccact ggcgcacgga tttcagtaca cccaacgacg
      841 gcgttaagcc cccctctttt ggggctgcgc ataattcaac tctgtctgcg ccgttttgct
      901 gcgccgttag tgcacattcc atgctgtaac agcaaatttc cagtaatgcc atttttactc
      961 cttaattacg ccgactgctc gctggcaacg atctcttcaa tggaccacgg atgaaactta
     1021 atagttgttt tgccatcggt gaccgccagc gtcggattcg gtaatcgctc atactcacct
     1081 tttggcgaac tggttttcac tgagatcccc ggtaggctga gtccttcatc agaaagcaat
     1141 gccagcgcac gggcattcag cgtttctgga tcacccggca gaacgatttc aatatgttcc
     1201 caaccttcgt gtgggtaacg tttttccccg ggccacggta gctccacaat ggaaaactgc
     1261 cagtgcgcaa cctgtaccgg ttcatgcaat ttaaacagac aaatcggtct gccattgatc
     1321 atattttctg acaaaagctc gccacactgt tcaaaaccgc gacgccagcg ctcagcggtg
     1381 acgttttgat ggcaacgcaa agaaatgtga tcggcagtca gcggagtgat atccaacccc
     1441 agacggcggg agagttcatc taatgcgtgg gtaaatcgcg gtaaatccga tgcaatatcc
     1501 tgcagctcgt cgatagattg ccagttcgcc ataatcactt ttcgtctttc agtaaaagcg
     1561 ttaatttacc ctgttgccct gcgccaacca accgctgatt tcacgccgct tctgatgcaa
     1621 tagtgaaaac ggcaatacgc cacgcgcacg ttgctgacga aaacagccat ttgcagtata
     1681 ctcccgccct aatttcttta actggtgcgg gcaatttttg ctcgcttcat caatgtaagg
     1741 tattccggtg aatattcagg ctcttctctc agaaaaagtc cgtcaggcca tgattgcggc
     1801 aggcgcgcct gcggattgcg aaccgcaggt tcgtcagtca gcaaaagttc agttcggcga
     1861 ctatcaggct aacggcatga tggcagttgc taaaaaactg ggtatggcac cgcgacaatt
     1921 agcagagcag gtgctgactc atctggatct taacggtatc gccagcaaag ttgagatcgc
     1981 cggtccaggc tttatcaaca ttttccttga tccggcattc ctggctgaac atgttcagca
     2041 ggcgctggcg tccgatcgtc tcggtgtttc tacgccagaa aaacagacca ttgtggttga
     2101 ctactctgcg ccaaacgtgg cgaaagagat gcatgtcggt cacctgcgct ctaccattat
     2161 tggtgacgca gcagtgcgta ctctggagtt cctcggtcac aaagtgattc gcgcaaacca
     2221 cgtcggcgac tggggcactc agttcggtat gctgattgca tggctggaaa agcagcagca
     2281 ggaaaacgcc ggtgaaatgg agctggctga ccttgaaggt ttctaccgcg atgcgaaaaa
     2341 gcattacgac gaagatgaag agtttgccga gcgtgcacgt aactacgtgg taaaactgca
     2401 aagcggtgac gaatatttcc gcgagatgtg gcgcaaactg gtcgacatca ccatgacgca
     2461 gaaccagatc acctacgatc gtctcaacgt gacgctgacc cgtgatgacg tgatgggcga
     2521 aagcctctac aacccaatgc tgccaggaat tgtggcggat ctcaaagcca aaggtctggc
     2581 agtagaaagc gaaggggcga ccgtcgtatt ccttgatgag tttaaaaaca aggaaggcga
     2641 accgatgggc gtgatcattc agaagaaaga tggcggctat ctctacacca ccactgatat
     2701 cgcctgtgcg aaatatcgtt atgaaacact gcatgccgat cgcgtgctgt attacatcga
     2761 ctcccgtcag catcaacacc tgatgcaggc atgggcgatc gtccgtaaag caggctatgt
     2821 accggaatcc gtaccgctgg aacaccacat gttcggcatg atgctgggta aagacggcaa
     2881 accgttcaaa acccgcgcgg gtggtacagt gaaactggcc gatctgctgg atgaagccct
     2941 ggaacgtgca cgccgtctgg tggcagaaaa gaacccggat atgccagctg acgagctgga
     3001 aaaactggct aacgcggttg gtattggtgc ggtgaaatat gcggatctct ccaaaaaccg
     3061 caccacggac tacatcttcg actgggacaa catgctggcg tttgagggta ataccgcgcc
     3121 atacatgcag tatgcttaca cgcgtgtatt gtccgtgttc cgtaaggcag aaattaacga
     3181 agagcaactg gctgcagctc cggtaatcat ccgtgaagat cgtgaagcgc aactggcagc
     3241 tcgcctgctg cagtttgaag aaaccctcac cgtggttgcc cgtgaaggca cgccgcatgt
     3301 gatgtgtgct tacctgtacg atctggctgg tctgttctct ggcttctacg agcactgccc
     3361 gatcctcagc gcagaaaacg aagaagtgcg taacagccgt ctgaaactgg cacaactgac
     3421 agcgaagacg ctaaagctgg gtctggatac gctgggtatt gagacagtag agcgtatgta
     3481 atcgattttt cgtgagagta aagcctgatc agggttacct gatcaggctt ttttattgcc
     3541 atctaaatgt attctgaaaa tggacatgcc attgttttct gactgttgga taagaggcca
     3601 gaagcgtaat atccggcccc agggaaacga taacggttga atttaaggaa taccgcagtg
     3661 tttaaatttc ttgtattaac attaggcatt atctcttgcc aggcttacgc agaagatacg
     3721 gttatagtaa acgaccatga catttcagcc atcaaagatt gttggcaaaa aaattcagat
     3781 gatgatactg acattaacgt gatcaaatca tgcctgcgac aagaatacaa tctcgtcgat
     3841 gcgcaattaa ataaagccta tggtgaagct tatcgttata tagaacaagt gccacgcaca
     3901 ggtgtaaaaa aaactgatac ctaacaactt aacttgctta aaaaatcaca gcgagcctgg
     3961 ctggatttta gggacaaaga atgtgaatta atcctttcaa atgaggacgt tcaggattta
     4021 agtgaccctt attctgaatc agaatggctc tcatgtatga tcatacagac caatacgcga
     4081 actcgccagt tgcagctata ccgtaactct gaagattttt atccaagccc tttgacaaga
     4141 ggataattca catctttttg gcatgttttg ttgcaagcta ttcctgataa ataattgcaa
     4201 caagacatcg agcctttttc actgagttat taaacatact cgcgagcgcg taattttttt
     4261 gtccttcagc gataattcac aatcacttca ttacgttgta cctttagcgg tggaattaac
     4321 cgcccaccgc ctggcacttc ccagataaat cgcaacggtt ctgctgccgc tataccggaa
     4381 aaggccacgg tggttccgct ctgcccctct aattcgacac aacgagattg cgaacacaag
     4441 cgaacccgca gtcctgaagg tgtcgggccg ataagctgat aacgccacgc taccagcgtc
     4501 atcaatcctg aagcaggttg tcgcgtagaa agaggcgcag acgacatcga ctcaccgcga
     4561 tgatttagcg taattcctac actacttgcc tgccacatcc cctccccggc ggcttgcacc
     4621 agcagcggaa acaataatat tgctaataag gttctcatta tttgccgcca attgtcgccg
     4681 tcatgcggat atgtcggtta tcagacagtt ccagattcga caggaccact aactgcggca
     4741 agctgcggcg caggaagcga gacaataatg gtcgcagcgc gtggttcacc aacaatactg
     4801 gcggcgcacc cagcatctcc tgacgggata gagcttcctg agtttgcgcc agtaaacgat
     4861 ccgccagccc tggctccagt ccttccccgc cctgcagcgc ctgtagtaac aaacgttcca
     4921 gcggtgtatc gaggccaata acatggactt catctttgcc aagaaaccac tgctgggtaa
     4981 tcgcccgtcc caacgccacg cgcacgacgg cggttaattc atgtggatcg ctttggatgg
     5041 gcgcatgttc cgccagcgtt tcgagaatgg tgcgcatatc gcgaatcggt actttttcat
     5101 cgaggagatt ttgcagcact ttatgcagtg tggtgagcgt gacgacgcca ggaacgagat
     5161 cttccgtcag ctttggcatc tcctgggcga cgcgatccaa cagctgttgc gcctcctgac
     5221 gaccaaacag ctctgcggca tgctggctaa tgaggtggtt aagatgcgtt gctaccaccg
     5281 tgctggcctc aaccactgtg tacccctgaa tctgcgcctg ttcttttagc gcactttcaa
     5341 tccagatagc attcaggcca aatgccggat cgacggtcgc ctcaccaggt aacgtcccgg
     5401 cagcggttcc agggttaatc gccaaccagc gccccggata agcatcacca ctgccaatct
     5461 ccacgccttt catcaaaatg cgatagcggg caggttgcag atccatattg tcgcgaatgt
     5521 gcaccactgg cggcagaaat cccatctcct gggcaaattt cttgcggata ctgcgtatac
     5581 ggcccaacaa ctcaccatcc tgctggaaat cgaccatcgg gatcagtcga taacccactt
     5641 ccattcccag agaatcttcc agttgtacat cgttccacgt cgcttcgaca acggtattat
     5701 tctctgccat ttttaccggt ttgggttcgg caggcgcttt ttgttcgcgt ccgcgtatcc
     5761 accaggccag ccccagatcc ggcagtgaac agcaaaaata ccaggttcgg cattccaggc
     5821 accaagccga gtaaaccgag cacggcggcg cttaacaaca taacgcttgg gttactgaaa
     5881 agctgattca ccatctgctc gccaacatcc tgatcggtgc tgacacgcgt aacgatgacc
     5941 cccgcggcgg tagaaatcac cagcgtcgga atttgtgcca ccagaccgtc gccaatggtc
     6001 aatagcgtat aactttccgc cgcgtgtccc atgctcatgc catgttgcag cacgccgacc
     6061 agcaacccgc cgacaacgtt aatgaccatg atgaggatcc cggcgatggc atcgccgcga
     6121 acaaacttac ttgccccgtc cattgagccg taaaaatcgg cttcctgagt cacttcggag
     6181 cggcgttttt tcgcctcatc ttcaccaatc aatccagcgt taaggtcggc gtcaatcgcc
     6241 atctgcttac ccggcatacc atcgagaaca aagcgcgcac ccacttctgc gatacgcccg
     6301 gcacctttgg taatgaccat aaagttgatg atcacgagaa tgacaaacac cacgatacct
     6361 atagcgaaat tgccaccaac gaggaagtga ccgaacgctt cgaccacctt ccctgccgcc
     6421 gccgcgccgg tatgcccttc catcaaaatg atacgggttg aagccacgtt aagtgccaga
     6481 cgcaacaacg tagtaaacaa cagaatggtc ggaaacgcag caaactcaag cgtgcgctgg
     6541 gtaaacatcg ccaccagcaa caccatgatc gacaaggcaa tattgaaggt aaacaacagg
     6601 tcgagtatga atgcgggcag tggcagcacc atcatcgaca agatcaacag gatcaaaatc
     6661 ggtccggcaa ggatctgcca ttgtgtcgat ttcaggtttg cgggcaggcg cagcatcgcg
     6721 gccagattac tcatgggtcg gtttctcgtt aataaaatcc agggcttccg gcaccggaag
     6781 atgagtaggt tgtacagggc gctgtccacc agccagacgc cagcgtttca gttgccagat
     6841 ccaggccagc acttccgcca ccgcggcgta cagttgaccc gggatttgtt gaccaatctc
     6901 cgcatgtcga tacagcgctc gcgccagcgg cggcgcttca agcgtcggga cgttattttc
     6961 agcgccaatt tcacgaatgc gcagcgcgac cagccctgca cctttagcga ccactttcgg
     7021 tgcgctcatt ttgttttcgt catactgcaa cgctaccgaa tagtgggtcg ggttattgac
     7081 aatgacatcc gctttcggca catcggccat catccgacgc cgtgcggcag ctcgctgcat
     7141 ctgacggatc cgtcctttaa catgggggtc gccttcgctt tgtttgaact catcacgaat
     7201 atcctgccgc gacattcgca gctttttcag gtggctgaag atttggaaaa agacgtcaaa
     7261 tcccaccatt ggaatgacac caagcaccac cagcagtgcg catagcccta ccaaatccat
     7321 cgcattaccc atggcggtaa tcggagactc ggccagtaag cgcatcatct gcggccagtg
     7381 atgccagaga aaaaaacccg tcacgctgcc aaccaggatg gttttcaaaa ttgctttaag
     7441 caactccgcg ccagtctgtg ccgagaacat ccgtttaatg cccggtagcg ggttgagttt
     7501 ggaaaacttc ggctgcaagg attttccgct aaataccagc ccccccagca tgaccggaga
     7561 aatgagcgct accagcacca cgccgctaat cagcggtagc agcgccagca tggcttctct
     7621 gatcagcaga ataatctgcc cgaggatcag attcgggtct ttgataatac tgtgatcaaa
     7681 atgcagccca gcggagagca tgcccgacaa tcgacgggcc agcgacacac cgccgaacca
     7741 gataacacac acgcccacca gcaaaatcag cagtgaggtc agttcacggg aacgcgggat
     7801 ttagggcttt tgctgccaca catcaagcat agtgtgcgtt tgtcggatgc ggcgtcatcg
     7861 ccttatcaga ccgcctgata tgacgtggtc acgccacatc aggcaataca aatcaaaatc
     7921 caagactatc caacaaatcg tccaccagat cctgactggc taccacaccg gctttgctgg
     7981 tatcgacctg aggtccatta agcaaactct ggttttcacg ttttggacgc gactcctgtt
     8041 ccgggatgtt ttccaacagc accatcagca actggcgttc gatctcctga atgacatcca
     8101 tcatccgctt aataacctgc ccggtgagat cctgaaaatc ctgcgccatc atgatttcca
     8161 gcagttgcgc gttagtaaag ctggtatgcg cgggtacatc tgccagaaat tgtcgtgtat
     8221 ctgttaccag ttcacgggcg tcggcaaggt caatcggatc ggcaaaccag tcatcccaac
     8281 gttgggttaa cgcttttgct gatttctcca tttgatcctg atgcggttgt gacgcctcaa
     8341 cactgttcag cgcccgctcc gcagcctggg cggtcatctg cacaacatag tacaaacgat
     8401 cgcgcgcatc ggggatggct tccgccgctt cggcaatggc ctgatccagc cccagttccc
     8461 gcaaactgtc gcgcagcata cgcgtcaggc tgccgatgcg cgcaatgata tcgccagctg
     8521 aatgctcgtc agcaggtttg attgatggtt gcatcatagt cgcatcctca catgtccagt
     8581 ttatcaaaga ttttgttgag tttttcctcc agcgtcgcgg cggtaaatgg cttcaccaca
     8641 tagccactgg cccccgcttg cgccgcagca atgatgttct ctttcttcgc ttctgcagtc
     8701 accattaaca ctggcaatgc cgacatcgcg ccatccgcac gaattgtttt cagcaattcc
     8761 aggccatcca tattgggcat gttccagtcg gagataacaa atccataacc gcctgcctgc
     8821 aacttattga gagcgtcgac gccatcttcc gcttcctcaa cattattgaa tcccagctct
     8881 ttcagcaggt tacgcactat gcgtcgcatg gtggaaaagt catccacaac caaaaattta
     8941 agttctttat ccgccatttc acactcctga tttaaatacg tatcgcctgt ccggcactaa
     9001 tttttgccaa catttgctgg cttacctggc taagatcgac cacttcgcag acaccaccca
     9061 tattgatggc ctcgcgcggc atgccgaaca ccacgcaact tgcttcgttt tgcgcaaggg
     9121 tccatgcccc cgcctgacgc atcgccaaca ttcccaccgc gccgtcgttg cccataccgg
     9181 tcaggatcac cccaaccgca ttacgccccg cctgtttggc gacagaatgg aacaacacat
     9241 ctaccgaagg ccgatgacgg ttaaccgccg ggccgtcgtg aattttgatt tgataatttg
     9301 cgccactacg cgccagttcc atatgccgat cgccctgcgc aatataggca tgccccggca
     9361 agacacgttc tccgtcttcg gcttctttaa ccccgatctg gcaaagctta ttaagtctgt
     9421 cggcaaaaga gcgggtgaaa ccgggcggca tatgttgggt aattaacaat gccgggctgg
     9481 aaagcggcaa cggttgcagt acgtgacgaa ttgcctcagt tccacccgtt gaagcaccaa
     9541 tcgcaatcag tttttcagaa ctcaacaacg gacccgcctt cagcgttgtc ggtgctgaca
     9601 atggcttatg tgctgcaagg ctcgcctttg ctgccgtacg caccttttca gcaatcattt
     9661 cgctatacgc cagcattcct tcgcgaatac ccagttgcgg tttggtgaca aaatctattg
     9721 cccccagctc cagcgcgcgc agcgtgactt ctgatccttt gccggtcaag gaagaaacca
     9781 tcacaacggg cattggacgc aaacgcatta atttttcgag gaaatccagt ccgtccatcc
     9841 gcggcatttc aacatccagc gtcagcacat cgggattgaa tttcttaatc aagtcacgcg
     9901 cgaccagcgg atcaggcgcg gtcgccacca tttccatgtc gctatggctg ttgatgattt
     9961 ctgtcatgat ctggcgcatc agtgccgaat catcgacaga taacaccctg attttgctca
    10021 tcgttaatcc ttacttagcg catacaccgt ctgaccacgc agcgtgaagc ggcgctcaag
    10081 gtggctaaag ttttcagagt gacccgcaaa cagcaatccg tcgggtttaa ggagcggaac
    10141 aaagcggcgc aaaatctcct gctgggtatt ttgatcgaag tagatcatga cgttacgaca
    10201 gaagatcgca tcaaacggcc ccggcacggt gtactgtttc gccagtagat tcagcggggc
    10261 aaaatcaaca tagttcgcca gctcctgacg cacgcgtacc agcccttcat gcggtcccgt
    10321 ccctcgcatg aaataccgtt gcagttgctg cggcgtcagg tttttcaact cttcatggcg
    10381 ataaataccg cttctggctt tttccagcac ttcggtgtcg atatcactgg caaacacttt
    10441 ccagcgtccg ggcgcggtgc ccaatgtgtc agccagcgtc atcgcaatgc tgtacggctc
    10501 ttcgccggtt gaagccgccg cgctccatac gcgatactcg ccagaacggc gacgtgcgtg
    10561 atccgcgagc agagggaaat gatgtgcctc acggaaaaat gccgtcagat tcgtggtcag
    10621 cgaattgata aacgcctgcc actcaccgct gtgctgatta gattccagca agttcagata
    10681 atgaccgaaa tccgtcagtc ctagcgaacg caaacgacga accagtcggt tgtaaaccat
    10741 gtcgcgttta tgatcggcca ggacgatccc ggctcgttga tagatcaatt gacttatccg
    10801 ccgaaaatgc gcgtcggaaa gcgccaggcg ctcggtcatc tgtaacaata aagacgtttg
    10861 cccacagggc agagatgaag tcatagcgcc ttctcaatca cttcaggata ccactggcgc
    10921 aatttgtaac tgcgccgact catgtcgtgc tacttcatgt tcttcaaggg taaataccgc
    10981 cacacgcgac gaaagatggt cggcctgatt cgccagttgt tccgttgcca ccgccgcttc
    11041 ttctaccagc gaggcgttct gctgagtcac ctgatccatc tggctgacag cctgtgcaac
    11101 ctgctcaatc ccccgccgtt gttcttccga cgccgaagca atttctccca taatgtcgtt
    11161 cacgcgggtc accgaactga caatatcggt catggtcgcg gcggcgttat tcaccagttt
    11221 cgaaccctgc tggacacgat tgactgactc ttcgatcagc cctttgatct cttttgctgc
    11281 ctgcgcgcta cggctggcaa gattgcgcac ttcacctgcc actaccgcaa aaccacgccc
    11341 ctgctctccg gcgcgagccg cttccactgc cgcattcagg gccagaatat tggtctggaa
    11401 agcaattccg tcgataacgc tgataatgtc gccaattttt tgcgagctgg tggcgatctc
    11461 ctgcatggtg tgagtcatgg tactgacctg aacaccgccc gcctgcgccg ttgtcgcggc
    11521 attttttgcc agttccgacg cctgtcgtgc gttatcggcg ttttgcccta ccgtggcggt
    11581 taattgctcc atactggcgg ccgtttgtgc cagcgatgcc gcctgctgtt cggtacgact
    11641 tgagagatcg ttattgcctg cgacaatctc cgcgatccca atgtgcatct catggcttcc
    11701 cttacgcaca tcactcaccg tcccacgcaa agcctgctgc atggtcttca ggctggcaaa
    11761 aatggcggtg atctcattac gaccatatac cgcaatcgga cgcgccagat tacccgcagc
    11821 aatgctgtca aaatggctac caataatggc cagtggttga acaatcatct tgcgcgtcca
    11881 ccacagcgca ctgctgatgt agattgccgc aacaataatc atgctgataa acaccagcgc
    11941 cgaaatctga tagttacgct gactttgcgc actggcggct tccagcacat ggttgatctc
    12001 cagctgccag gcctcaaagt taacgtcaaa cgcattctgt gatccctgca ccggcgcagt
    12061 gaggaaatcc gaaagttgat tactttcaag ccaggtcgcc tgatgttcga gatcgttgtg
    12121 ccagcgggca aaacttttct ccgtctcttt ttgcaatgcc ctgacgtgct cgttgcccgc
    12181 agtcatcgcc ataaaacttt taaacagcgt ggtggattgc gtcagactgg cgcgcgccgt
    12241 cgtcatcaac gttttaatgt catccgccgg atagctaagt gccgtcagag tgcccgcttt
    12301 gttcagcgcg gtactggcct gtaacattat cgcccgagtt tgcgctaatg ccgcacgttg
    12361 ctgattgctc tgctcgacct gattcagtcg ttgcaaatcg tcgcgaaatg cccaaaaaga
    12421 catgccgtta ctgccaatct gcaagatccc gcagagaatc aaaattaaaa acagcgtggt
    12481 cgaaattcga atacgattaa acatcaacgc tccccatcag gcggcaatga ccgcgttagt
    12541 aaatactcgt caaaatgttt cccagtttgg atcttgttca gcaattcgca gtcgtggctg
    12601 tgccggtggt tgctcactgg caggacggga tggtgtttgc ggtttattgg tgagtgggct
    12661 ggctgccaga cggaacgtgg aaaccgcttg cgttaaacga ctcgcctgtt cttccagcgc
    12721 agcggcggcg gcagctgatt cctgcaccag cgatgcgttc tgttgcgtga cgcgatccat
    12781 ttccgaaacc gccaatgcga cttgaacgat gccacggctc tgttcatccg atgccgatgc
    12841 aatctcgccc ataatgtcag tcacgcgagt gacagcattg acgatattgt tcattgtttc
    12901 cccggcgctt tcgaccagca ccgaaccggt atcaacgcgt gcgacggagt cttcaatgag
    12961 ggctttgatc tcttttgccg cctggacgct gcgactggca agattacgca cttcacccgc
    13021 caccacggca aaaccacggc cctgttcacc cgcacgcgcg gcttcaaccg cggcattcag
    13081 cgcgaggata ttagtctgga aggcgatacc gtcgataacg ctgataatgt cggcaatttt
    13141 cttcgaacta tcggcgatct catgcatcgt tttcactacg ccatccacca ctttgccgcc
    13201 gtgctgggcg gtgtcggagg cactttgcgc cagttgcgag gcctggcggg cgttatcggc
    13261 gttttgcttc actgtcgcgg tgagctgctc catgctggcg gcagtttctt ccagcgcgga
    13321 tgcctgctgt tcagtacggg aggaaagatc ggtgttgccc gccgcaattt cacgggtacc
    13381 ggcatagatg gcatctgaac cttcgcggac atgagtgacg gtgtcagtca aagagcgttg
    13441 catatgtgaa acgctctgcg ccaggtcgcc catttcactg cgcccgtcaa tgttttgcat
    13501 tccctgggtt ggctgagcga aataagctcc agtattgcca taatctagat aatcaatcag
    13561 ttcagttaac gctgtgtaat agtttttata tttttcatca atattacgac tggtagcgac
    13621 catttcaggt aacggtgcca tgcttttgaa ttttttataa tgcgtcgctg cctgcgccaa
    13681 tgttttcctg gcgctatcga gcaattcaac tttggcgtta ctttgttgat tggaggaatc
    13741 catcatcatc cgcaccgctg aacgactcag gttaatgcgc gtttgcagca ttaaatccca
    13801 ggttgacgtc agctcgccct gctgttcccg caattgattg gaaaccacaa agctcttctg
    13861 gctatggtga agggaagaaa aaaacagact gccggaaata agctgtaaca gtgcaaatac
    13921 ccccaacacc attaccaaca gcgtgactac gcggatacgg ttaatcataa ggcaccttcc
    13981 tgaaaacaag ttgatctcgt tatcggcaag aaggggggaa actttattgc tgatgccacc
    14041 cgccgcgaaa ttgaaataaa aaacccgatg cgcagatcat cgggttcatt tcaattgagg
    14101 aaatcgggag aattacgcca cttctgacgc cgcgctatct aacagcgcca tctcttcgct
    14161 gttcagcagt ttttcgatgt tcaccagaat caacatccgg tcgcccagtg cgcccagtcc
    14221 agtgagatat tctgttgaaa gcgtcacggc aaattccggt gccggacgaa tttgctccgc
    14281 cgtcaatgaa agcacgtctg agacgccgtc aaccacgatg ccgaccaccc gctgtccgag
    14341 attcaggacg ataactaccg tgttgtcgtt atagtccaca tccacctggc tgaacttaat
    14401 tcgtaagtca acaatcagca caataacgcc gcgcagattc gtgacgcctt tgataaacgc
    14461 tggcgtgttc gcaatccgtg ttacctgatc gtagccacgg atctcctgca ctttcaggat
    14521 atcaataccg tactcttcat caccaagggt aaataccaga aattcctggc ctgacggctc
    14581 gctggccagc tttgttacat tcgtcatacc ggtcatattg ttaccttttt actcattcag
    14641 gcggcggtgt tcgccatacg ttgttcgcgg tttatcgcct gcaaggcgga gacatcaaca
    14701 atcagtgcca cgctgccgtc gccaagaatg gtcgcagcag aaatgccggg gactttgcga
    14761 tagttacttt caaggttttt aaccacaacc tggtgctgac caattaattg atccaccagc
    14821 aaggcgtagc ggcgaccgcc actttgtaag atcaccacaa ttccctgggt ggcttcggtt
    14881 ttcgcgcccg cgacgttgaa cactttccac agttcgacga tgggcagata ttcgccccgc
    14941 acttccagca cccgctcgcc gccggccagt ggatgcagat cggcttcacg gggttgcagt
    15001 gattccatga cagcattcag cggcagaatg aaaacttcat ccgcaacgcg tacggacatg
    15061 ccgtcgagga tggccagcgt cagcggcagt aaaatgcgga tcgtagtgcc agtaccctgc
    15121 ttcgactgga tttcgacatg accgcccatc tcctggatat tacgtttaac gacgtccatg
    15181 ccgacgccgc gcccggagac gtcggtgacc tgctctgccg tggagaagcc tggtgcaaat
    15241 atcagcatcg cgacttcgtc gtcgctcatg ttttcgctga cagtcaaacc ttgcgaggcc
    15301 gcttttgcca gaattcgctc acggtttagc cccgccccat cgtcggtcac ttcaatgcaa
    15361 atgttgccgc cctgatgttc ggcagacaga attaaatttc cgacgctgtt tttacctgcg
    15421 gcgagccgtt tttctggcag ttcaataccg tgatcgaggc tattgcgtac caggtgggtc
    15481 agcgggtcga taatgcgttc tatcaggctc ttgtcgagct cagtggaact gcccaccagc
    15541 gtcagttcta cctgcttgcc gagttttccc gccagatcac gcaccagccg gggatagcga
    15601 ctaaaaacat attccatcgg catcatgcga atcgacatca ctgattcctg caaatcacgg
    15661 gcgttacgtt gtaactgccc catgctggtt atcaaatcac catgattaac cgggtctagt
    15721 tcgctggaac gctgggcaag catggactgg gtgataacca gctcgccgac gaggttaatt
    15781 aattgatcaa ccttttctac cgctacacgg atgctggtgg attcactgct gcgcgtcgtt
    15841 ttttcccgct ccacgcggcc ggttggtgct tgttcggctg ccagtttaag cactggtggg
    15901 gtggatattt ttggcgagac ttctactgtt tcaaaggtaa tctgatcggc ttcaatcaca
    15961 aaacagagta ccgctgtgat gtcatcttcg gcgatgtcgc ccggtaatat tgccgagagc
    16021 gaatccgccc ctttcaccac gtcagttaac gttatcagat gtcccagttc ttcttccagc
    16081 aggtcgactt ccccggcctt caggcgcgaa aggataattc gtcgcggcga ctgactgcga
    16141 ctctgctcat cttgcggttc acttttggca accacactta atcgggtcac tgcggatggc
    16201 gtttcgcctt tcgcttctaa tgccaattga cgcaaggcct ggcagatata atcgaagctg
    16261 gcggcatccg gctcttgcga ctgtttataa gcgtcgagct gttcttgcat gatgtccttc
    16321 gtttccaaaa acagattgat aatgtcggtg ttgagttgca tctcacctcg tctggcttca
    16381 tcgagcaggt tttccatcag atgcgtggtt tcctgcaaaa cgctgaagcc aaaagttcct
    16441 gcccctcctt tgatcgagtg gacagcccga aagatggcat tcaattgttc ggcatctggc
    16501 gcttccggct gcaaaaccag cagatgctgc tccatatcag ccaacagttc gtccgcttca
    16561 tcaaaaaatg tctgataaaa atcgcttata tccatgctca cgctgtcacc tcggttcggc
    16621 tgatggcatt gtgggaacac tga
//
LOCUS       DADMHM010000074        16549 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.075, whole genome shotgun sequence.
ACCESSION   DADMHM010000074 DADMHM010000000
VERSION     DADMHM010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16549)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16549)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16549
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.075"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            89..365
                     /locus_tag="JN125_002139"
                     /pseudo
     CDS             89..365
                     /locus_tag="JN125_002139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001254202.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            536..883
                     /locus_tag="JN125_002140"
     CDS             536..883
                     /locus_tag="JN125_002140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YidH family protein"
                     /protein_id="HAY8871921.1"
                     /translation="MKISRLGEAPDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAP
                     DFATPVIRELLALLLCLFSGGLAMYGYLRWLRNEKAMRLKEDLPYTNSLLIISLILMV
                     VAVIVMGLVLYAG"
     gene            873..1235
                     /locus_tag="JN125_002141"
     CDS             873..1235
                     /locus_tag="JN125_002141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF202 domain-containing protein"
                     /protein_id="HAY8871922.1"
                     /translation="MPDSRKARRIADPGLQPERTSLAWFRTMLGYGALMALAIKHNWH
                     QAGMLFWISIGILAIVALILWHYTRNRNLMDVTNSDFSQFHVVRDKFLISLAVLSLAI
                     LFAVTHIHQLIVFIERVA"
     gene            1232..1729
                     /locus_tag="JN125_002142"
     CDS             1232..1729
                     /locus_tag="JN125_002142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HAY8871923.1"
                     /translation="MTGSQVIDAEEDRHKLVVEYKDALQPADFYHNFKQRGIRSVQLI
                     PYLEFDDRGDLTAASVTAELWGKFLIALFECWVRADISRISIELFDATLQKWCGGENP
                     QPRRDCQACDWHRLCPHARQETPDSVLCAGYQAFYSYSAPHMRVMRDLIKQHRSPMEL
                     MTMLR"
     gene            complement(1737..2921)
                     /gene="emrD"
                     /locus_tag="JN125_002143"
     CDS             complement(1737..2921)
                     /gene="emrD"
                     /locus_tag="JN125_002143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418129.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter EmrD"
                     /protein_id="HAY8871924.1"
                     /translation="MKRQRNVNLLLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGA
                     VQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAA
                     SAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWN
                     WRACYLFLLVLCVGVTFSMARWMPETRPVDAPRTRLLTSYKTLFGNSGFNCYLLMLIG
                     GLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ
                     SVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGT
                     AGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGWLIVLCWLPLATRMSHQGQ
                     PV"
     gene            complement(3340..3429)
                     /gene="tisB"
                     /locus_tag="JN125_002144"
     CDS             complement(3340..3429)
                     /gene="tisB"
                     /locus_tag="JN125_002144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin TisB"
                     /protein_id="HAY8871925.1"
                     /translation="MSLVDIAILILKLIVAALQLLDAVLKYLK"
     gene            3994..4092
                     /gene="ivbL"
                     /locus_tag="JN125_002145"
     CDS             3994..4092
                     /gene="ivbL"
                     /locus_tag="JN125_002145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ilvB operon leader peptide IvbL"
                     /protein_id="HAY8871926.1"
                     /translation="MTTSMFNAKLLPTALSAAVVVVRVVVVVGNAP"
     gene            4198..5886
                     /gene="ilvB"
                     /locus_tag="JN125_002146"
     CDS             4198..5886
                     /gene="ilvB"
                     /locus_tag="JN125_002146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HAY8871927.1"
                     /translation="MASSGTTSTRKRFTGAEFIVHFLEQQGIKIVTGIPGGSILPVYD
                     ALSQSTQIRHILARHEQGAGFIAQGMARTDGKPAVCMACSGPGATNLVTAIADARLDS
                     IPLICITGQVPASMIGTDAFQEVDTYGISIPITKHNYLVRHIEELPQVMSDAFRIAQS
                     GRPGPVWIDIPKDVQTAVFEIETQPAMAEKAAAPAFSEESIRDAAAMINAAKRPVLYL
                     GGGVINAPARVRELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGVRSTNYILQEA
                     DLLIVLGARFDDRAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQL
                     IPQVEAQPRAEWHQLVADLQREFPCPIPKACDPLSHYGLINAVAACVDDNAIITTDVG
                     QHQMWTAQAYPLNRPRQWLTSGGLGTMGFGLPAAIGAALANPDRKVLCFSGDGSLMMN
                     IQEMATASENQLDVKIILMNNEALGLVHQQQSLFYEQGVFAATYPGKINFMQIAAGFG
                     LETCDLNNEADPQAALQEIINRPGPALIHVRIDAEEKVYPMVPPGAANTEMVGE"
     gene            5890..6180
                     /locus_tag="JN125_002147"
     CDS             5890..6180
                     /locus_tag="JN125_002147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase isozyme 1 small subunit"
                     /protein_id="HAY8871928.1"
                     /translation="MQNTTHNNVILELTVRNHPGVMTHVCGLFSRRAFNVEGILCLPI
                     QDSDKSHIWLLVNDDQRLEQMISQIDKLEDVVKVQRNQSDPTMFNKIAVFFQ"
     gene            6254..6844
                     /gene="uhpA"
                     /locus_tag="JN125_002148"
     CDS             6254..6844
                     /gene="uhpA"
                     /locus_tag="JN125_002148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator UhpA"
                     /protein_id="HAY8871929.1"
                     /translation="MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLP
                     GRGVQVCICDISMPDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKR
                     CSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA
                     ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW"
     gene            6844..8346
                     /gene="uhpB"
                     /locus_tag="JN125_002149"
     CDS             6844..8346
                     /gene="uhpB"
                     /locus_tag="JN125_002149"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418124.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal transduction histidine-protein
                     kinase/phosphatase UhpB"
                     /protein_id="HAY8871930.1"
                     /translation="MKTLFSRLITVIACFFIFSAAWFCLWSISLHLVERPDMAVLLFP
                     FGLRLGLMLQCPRGYWPVLLGAEWLLIYWLTQAVGLTHFPLLMIGSLLTLLPVALISR
                     YRHQRDWRTLLLQGAALTAAALLQSLPWLWHGKESWNALLLTLTGGLTLAPICLVFWH
                     YLANNTWLPLGPSLVSQPINWRGRHLVWYLLLFVISLWLQLGLPDELSRFTPFCLALP
                     IIALAWHYGWQGALIATLMNAIALIASQTWRDHPVDLLLSLLVQSLTGLLLGAGIQRL
                     RELNQSLQKELARNQHLAERLLETEESVRRDVARELHDDIGQTITAIRTQAGIVQRLA
                     ADNASVKQSGQLIEQLSLGVYDAVRRLLGRLRPRQLDDLTLEQAIRSLMREMELEGRG
                     IVSHLEWRIDESALSENQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQDERLMLVIE
                     DDGSGLPPGSGQQGFGLTGMRERVTALGGTLHISCLHGTRVSVSLPQRYV"
     gene            8356..9675
                     /gene="uhpC"
                     /locus_tag="JN125_002150"
     CDS             8356..9675
                     /gene="uhpC"
                     /locus_tag="JN125_002150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418123.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter family glucose-6-phosphate
                     receptor UhpC"
                     /protein_id="HAY8871931.1"
                     /translation="MLPFLKAPADAPLMTDKYEIDARYRYWRRHILLTIWLGYALFYF
                     TRKSFNAAVPEILANGVLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGL
                     IATGIINILFGFSTSLWAFAVLWVLNAFFQGWGSPVCARLLTAWYSRTERGGWWALWN
                     TAHNVGGALIPIVMAAVALHYGWRAGMMIAGCMAIVVGIFLCWRLRDRPQALGLPAVG
                     EWRHDALEIAQQQEGAGQTRKEILTKYVLLNPYIWLLSFCYVLVYVVRAAINDWGNLY
                     MSETLGVDLVTANTAVTMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVG
                     SLWLMPFASYVMQATCFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLG
                     ASLAGWPLAKVLDTWHWSGFFVVISIAAGISALLLLPFLNAQTPREA"
     gene            9813..11204
                     /gene="uhpT"
                     /locus_tag="JN125_002151"
     CDS             9813..11204
                     /gene="uhpT"
                     /locus_tag="JN125_002151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexose-6-phosphate:phosphate antiporter"
                     /protein_id="HAY8871932.1"
                     /translation="MLAFLNQVRKPTLDLPLEVRRKMWFKPFMQSYLVVFIGYLTMYL
                     IRKNFNIAQNDMISTYGLSMTQLGMIGLGFSITYGVGKTLVSYYADGKNTKQFLPFML
                     ILSAICMLGFSASMGSGSVSLFLMIAFYSLSGFFQSTGGSCSYSTITKWTPRRKRGTF
                     LGFWNISHNLGGAGAAGVALFGANYLFDGHVIGMFIFPSIIALIVGFIGLRYGSDSPE
                     SYGLGKAEELFGEEISEEDKETESTDMTKWQIFVEYVLKNKVIWLLCFANIFLYVVRI
                     GIDQWSTVYAFQELKLSKAVAIQGFTLFEAGALVGTLLWGWLSDLANGRRGLVACIAL
                     ALIIATLGVYQHASNEYIYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGAADGIKG
                     TFAYLIGDSFAKLGLGMIADGTPVFGLTGWAGTFAALDIAAIGCICLMAIVAVMEERK
                     IRREKKIQQLTVA"
     gene            complement(11249..13015)
                     /gene="adeD"
                     /locus_tag="JN125_002152"
     CDS             complement(11249..13015)
                     /gene="adeD"
                     /locus_tag="JN125_002152"
                     /EC_number="3.5.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine deaminase"
                     /protein_id="HAY8871933.1"
                     /translation="MNNSINHKFHHISRAEYQELLAVSRGDAVADYIIDNVSILDLIN
                     GGEISGPIVIKGRYIAGVGAEYADAPALQRIDARGATAVPGFIDAHLHIESSMMTPVT
                     FETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSSCVPALEGCD
                     VNGASFTLEQMLAWRDHPQVTGLAEMMDYPGVISGQNALLDKLDAFRHLTLDGHCPGL
                     GGKELNAYITAGIENCHESYQLEEGRRKLQLGMSLMIREGSAARNLNALAPLINEFNS
                     PQCMLCTDDRNPWEIAHEGHIDALIRRLIEQHNVPLHVAYRVASWSTARHFGLNHLGL
                     LAPGKQADIVLLSDARKVTVQQVLVKGEPIDAQTLQAEESARLAQSAPPYGNTIARQP
                     VSASDFALQFTPGKRYRVIDVIHNELITHSHSSVYSENGFDRDDVCFIAVLERYGQRL
                     APACGLLGGFGLNEGALAATVSHDSHNIVVIGRSAEEMALAVYQVIQDGGGLCVVRNG
                     QVQSHLPLPIAGLMSTDTAQSLAEQIDALKAAARECGPLPDEPFIQMAFLSLPVIPAL
                     KLTSQGLFDGEKFAFTTLEVTE"
     gene            13190..14524
                     /locus_tag="JN125_002153"
     CDS             13190..14524
                     /locus_tag="JN125_002153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418120.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HAY8871934.1"
                     /translation="MNNDNTDYVSNESGTLSRLFKLPQHGTTVRTELIAGMTTFLTMV
                     YIVFVNPQILGAAQMDPKVVFVTTCLIAGIGSIAMGIFANLPVALAPAMGLNAFFAFV
                     VVGAMGISWQTGMGAIFWGAVGLFLLTLFRIRYWMISNIPLSLRIGITSGIGLFIALM
                     GLKNTGVIVANKDTLVMIGDLSSHGVLLGILGFFIITVLSSRHFHAAVLVSIVVTSCC
                     GLFFGDVHFSGVYSIPPDISGVIGEVDLSGALTLELAGIIFSFMLINLFDSSGTLIGV
                     TDKAGLIDGNGKFPNMNKALYVDSVSSVAGAFIGTSSVTAYIESTSGVAVGGRTGLTA
                     VVVGVMFLLVMFFSPLVAMVPPYATAGALIFVGVLMTSSLARVNWDDFTESVPAFITT
                     VMMPFTFSITEGIALGFMSYCIMKVCTGRWRDLNLCVVVVAALFALKIILVD"
     gene            14577..15029
                     /locus_tag="JN125_002154"
     CDS             14577..15029
                     /locus_tag="JN125_002154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418119.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1198 domain-containing protein"
                     /protein_id="HAY8871935.1"
                     /translation="MIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRLNIDVVPVES
                     MVDQMGKSAGDEFLRYLHRPDESHLQNAAQVLLIWQIVIVDGSEQNLLQWHRILQKAR
                     LAAPITDAQVRLALGFLRETEPEMQDINAFQMRYNAFFQPAEGVHWLH"
     gene            15239..16429
                     /gene="nepI"
                     /locus_tag="JN125_002155"
     CDS             15239..16429
                     /gene="nepI"
                     /locus_tag="JN125_002155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418118.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine ribonucleoside efflux pump NepI"
                     /protein_id="HAY8871936.1"
                     /translation="MSEFIAENRGADAITRPNWSAVFSVAFCVACLIIVEFLPVSLLT
                     PMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRCYVVILFAVLLTLSCLLV
                     SFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVAPRTVPKALSVIFGAVSIALVIA
                     APLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSHQKQNTFRLLQRPGV
                     MAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFIGTSLSSFIL
                     KRSVKLALAGAPLILAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSL
                     ADQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALLVTAKVK
                     MKKS"
BASE COUNT         3593 a         4206 c         4611 g         4139 t
ORIGIN      
        1 agcagcgggt acggtcagcc tgccggggcg caatgtccgg gcaaaatcag gtttaaaccg
       61 ttcgatactg gatcagggct ggtatgaaat gcgccgccag cttgagtaca agcagctctg
      121 gagtggcggt caggtgcttg ctgttccgcc agcgttgcgc gtgctgtggt catacagcga
      181 aagaaaatcg cctgtcacaa agtaaattca gatgccaggt atgtggatat acagcgaacg
      241 ccgatgtaaa tggcgctcgt aacattttag cggcggggca cgccgttctt gcctgtggag
      301 agatggtgca gtcaggccgc ccgttgaagc aggaacccac cgaaatgatt caggcgacag
      361 cctgaacgta gcagggatcc tcgtccttca gggcgtggag gatgtcaatt tgcgctatga
      421 tacccatctg acctccttgt agcggatggc aaaagcatat caggaaacgg gcggacgaaa
      481 ttcttaaaaa aaaccgctaa agatagagcg ttagtgaaat tgcaaaggag caacaatgaa
      541 aatttcccgc cttggagaag cgcccgatta ccgcttctcg ctggctaatg agcgtacttt
      601 tctggcgtgg atccgtaccg cactaggatt tctggcggcg ggggttgggc ttgatcaact
      661 tgcgccagat ttcgccacgc ccgtcattcg tgaactgctg gcgttgttgt tgtgtctgtt
      721 ttccggcggg ttagcaatgt atggctacct gcgctggtta cgcaatgaaa aagcgatgcg
      781 tctgaaagag gacctgccct acaccaacag cttattaatc attagcttaa tattgatggt
      841 cgtggcggtg atcgttatgg gactggtgtt gtatgccgga tagccgcaaa gccagacgca
      901 ttgccgaccc aggactgcag ccggagcgca catcactggc gtggtttcgt accatgctgg
      961 gctacggcgc gttgatggcg ttggctatca aacacaactg gcaccaggcg ggcatgttat
     1021 tctggatttc gattggcatt ctcgccatcg tggcgctgat cctctggcac tacacccgta
     1081 atcgcaattt aatggatgtc acgaatagcg atttttccca atttcacgta gtccgtgaca
     1141 aatttttgat ctccctcgcg gtgttatctc tcgcaatact gtttgctgta acgcatatac
     1201 atcaacttat cgtatttatt gagagagtcg catgacagga agtcaggtca ttgatgctga
     1261 agaggacagg cataaactgg ttgtagagta caaggatgct ctgcaacctg ccgattttta
     1321 tcacaatttc aaacagcggg gcatccgctc cgtacagctc attccctatc ttgaatttga
     1381 tgaccggggc gatctgacgg ccgcttcggt gacagcagag ctgtggggga aatttttaat
     1441 tgccctgttc gagtgttggg tgcgggcaga tatcagtcgt atctcgattg agctttttga
     1501 cgccacctta caaaaatggt gtggcggcga aaacccgcaa ccgcgccgtg actgccaggc
     1561 gtgcgactgg catcgcctgt gcccgcacgc tcggcaggag acgccagaca gcgtgctttg
     1621 tgcgggctat caggcgtttt attcttactc cgcaccgcat atgcgggtga tgcgtgatct
     1681 gataaagcag catcgttctc ccatggagct gatgacgatg ctgcggtgac gtgcgcttaa
     1741 acgggctgcc cctgatgcga catccgcgtc gccagcggca gccagcacag cacgatcaac
     1801 catcccatta aggtcatcaa taaccccagg ctaccctgac cggtttgcgg caacatcgca
     1861 gagagcgacg ccagcacgcc ggaaccaatg ttttgcagac cgccgaccag cgcgccagcc
     1921 gtgcccgcca ggaaggggaa cggctccatc gcgccgctgg tcgccagcgg aaacagcatc
     1981 ccggcaccga aaaagaacag cgcggcggga acgagcagcg tccagacatt catcacgcca
     2041 aaccagtcgg ggatccacat cagcaagcca gccagcaggc agcagataac cgactgccac
     2101 attaacgtgg agaagcgttt attgggacgt ccggcaaacc atgcgccaaa aaacgctgcc
     2161 ggaatcggca gaataaacaa aatactgacc gtcatactgc tcagccctaa caccgcgccc
     2221 atcagcacgc cggagcaggc ttcaaaggcg gcaatcccgg ccagaccgcc aatcagcatc
     2281 agcaaataac agttaaaacc gctgttaccg aaaagcgttt tataactggt aagcaggcgc
     2341 gtgcgcggtg catcgaccgg acgcgtttcc ggcatccagc gggccatact gaaggtcaca
     2401 ccaacacaaa gaaccaacaa aaagagataa caggcgcgcc agttccacat cgtatccagc
     2461 agaccgccga ttagcggtgc gagcaacgga ctgacgagaa tccccatgtt taacaggctg
     2521 ttagcatggc gcaactgtgt ccgttcatat aaatctcgcg gcaaagtacg cgccattacg
     2581 ccgccaacgc cggtgcccat cccctgcatc gcgctggcgg caatcaatac cgtcaaactg
     2641 gaggtcgtga ccgcgaccag cgttgccagc ataaaaatgg acattccgac gaggatcacc
     2701 ggtcggcgac ccacacggtc ggaaatcggg ccataaaaca gctgtgagac accgtaagtc
     2761 agcagataag cgcccattac gctctgcacc gccccttcac ggacgttgag atcgcgcgcc
     2821 atatcggcaa tagctggaat ataaatggtt tgcgccatct gaccgacggc cacgagtaat
     2881 accaacatca ataacaaatt gacgtttctt tgccttttca ttatcacgga tgcttttata
     2941 aaaataatta gaataagtca ctacgcattc ccataaatgc gggagaggaa tctatcacat
     3001 tgatgaatgt tagccagata tacgccagga atggggaatt gtttagcggc agaatatgta
     3061 aacaaaagcg gcaataaatg ttgccgggag ggattacgtg cgaactgtaa ccctctcccc
     3121 aaaggggcga gggggaaacc accgttccct ttcagaaaat gagctaaaca ttgcacggga
     3181 cggtcccctc gcccctttgg ggagagggct agggtgaggg gcacaggcag cgcaggtgca
     3241 aacattctgc tggtagaaga agcccccaac tccaacccgc acgctaaata taaaagggga
     3301 gcggttaccc gctccccttt ggtgcgactt gaatctgaat tacttcaggt atttcagaac
     3361 agcatcaagc agttgcagtg ctgcaacaat gagtttgagg ataagaatgg cgatatccac
     3421 caggctcata cgcgtctcct gtggttcagg agcactgcca gctgacgtac ctttccgctg
     3481 cctgttgcca gctgttgtgc acgcggtatc tcaaggagaa acgttgtgct tgttgacata
     3541 acacagtgtg ctcacgcggg gttaaggcgc tgacggcacc acccgtttca gccaggactt
     3601 agtgcgccgg gtaacgatgc ggcccccgta taatacattg cgtacagtga tattatagaa
     3661 gtttactgta taaataaaca gtaatatttg gacaaaacgc aaactgtgat cgatactcaa
     3721 ctatgcccta aatacgtcaa aattcgtgcc gaaattgcgc gttctgcgcg gaacacgtat
     3781 actttcagtg ttgacataat acagtgtgct ttgcggttac cagctgcagg cggctgatga
     3841 aacctcgctc cggcggggtt ttttgttacc tgcaattcag tacaaaacgt gatcagcccc
     3901 tcaattttcc cttgctgaaa aattttccat tgtctcccct gtaaagctgt gcttgtataa
     3961 atattgttaa acacaaaacc aacaaggtcc ccaatgacta cttccatgtt caacgcaaaa
     4021 ctactaccaa ctgcgctatc cgccgcagtg gtcgtcgtgc gtgtggtggt ggtcgtcggc
     4081 aatgcgccgt agggactgga acaacacacg attccaaaac cccgccggcg caaaccgggc
     4141 ggggtttttc gtttaagcac ctcccggaaa gtcggcccag aagaaaagga ctggagcatg
     4201 gcaagttcgg gcacaacatc gacgcgtaag cgctttaccg gcgcagaatt tatcgttcat
     4261 ttcctggaac agcagggcat taagattgtg acgggcattc caggcggttc tatcctgcct
     4321 gtttacgatg ccttaagcca aagcacgcaa atccgccata ttctggcccg tcatgaacag
     4381 ggcgcgggat ttatcgctca ggggatggcg cgcaccgacg gtaaaccggc ggtctgtatg
     4441 gcctgtagcg gaccgggtgc gactaacctg gtgaccgcca ttgccgatgc gcggctggac
     4501 tccatcccgc tgatttgcat caccggtcag gttcccgcct cgatgatcgg caccgacgcc
     4561 ttccaggaag tggacaccta cggcatctct atccccatca ccaaacacaa ctatctggtc
     4621 agacatatcg aagaactccc gcaggtcatg agcgatgcct tccgcattgc gcaatcaggc
     4681 cgcccaggcc cggtgtggat agacattcct aaggatgtgc aaacggcagt ttttgagatt
     4741 gaaacacagc ccgctatggc agaaaaagcc gccgcccccg cctttagcga agaaagcatt
     4801 cgtgacgcag cggcgatgat taacgctgcc aaacgcccgg tgctttatct gggcggcggt
     4861 gtgatcaatg cgcccgcacg ggtgcgtgaa ctggcggaga aagcgcaact gcctaccacc
     4921 atgactttaa tggcgctggg catgttgcca aaagcgcatc cgttgtcgct gggtatgctg
     4981 gggatgcacg gtgtgcgcag caccaactat attttgcagg aggcggattt gttgatagtg
     5041 ctcggtgcgc gttttgatga ccgggcgatt ggcaaaaccg agcagttctg tccgaatgcc
     5101 aaaattattc atgtcgatat cgatcgcgca gagctgggta aaatcaagca gccgcatgtg
     5161 gcgattcagg cggatgttga tgacgtgctg gcgcaattga tcccgcaggt ggaagcgcaa
     5221 ccgcgtgcag agtggcacca gttggtagcg gatttgcagc gcgaattccc gtgtccaatc
     5281 ccgaaagcgt gcgatccatt aagccattac ggcctgatca acgccgttgc cgcctgtgtc
     5341 gatgacaatg cgattatcac caccgatgtg ggtcagcatc agatgtggac cgcgcaagct
     5401 tatccgctca atcgcccacg ccagtggctg acctccggtg ggctgggcac gatgggtttt
     5461 ggcctgcctg cggcgattgg cgcggcgctg gcgaacccgg atcgcaaagt gttgtgtttc
     5521 tccggcgacg gcagcctgat gatgaatatt caggagatgg cgaccgccag tgaaaatcag
     5581 ctggatgtca aaatcattct gatgaacaac gaagcgctgg ggctggtgca tcagcaacag
     5641 agtctgttct acgagcaagg cgtttttgcc gccacctatc cgggcaaaat caactttatg
     5701 cagattgccg ccggattcgg cctcgaaacc tgtgatttga ataacgaagc cgatccgcag
     5761 gctgcattgc aggaaatcat caatcgccct ggcccggcgc tgatccatgt gcgcattgat
     5821 gccgaagaaa aagtttaccc gatggtgccg ccaggtgcgg cgaatactga aatggtgggg
     5881 gaataagcca tgcaaaacac aactcataac aacgtaattc tggagctcac cgttcgcaac
     5941 catccgggcg taatgacgca cgtttgtggc cttttttccc gccgcgcttt taacgttgaa
     6001 ggcattcttt gtctgccgat tcaggacagc gacaaaagcc atatctggct actggtcaat
     6061 gacgaccagc gtctggagca gatgataagc caaatcgata agctggaaga tgtcgtgaaa
     6121 gtgcagcgta atcagtccga tccgacgatg tttaacaaga tcgcggtgtt ttttcagtaa
     6181 ccgctcaagg cttgaacaac atcgcgctta tcgttaaggt aagcgcgttt tttttacccg
     6241 ccaggacaag accatgatca ccgttgccct tatagacgat cacctcatcg tccgctccgg
     6301 ctttgcgcag ctgctggggc tggaacctga tttgcaggta gttgccgagt ttggttcggg
     6361 gcgcgaggcg ctggcggggc tgccggggcg cggtgtgcag gtgtgtattt gcgatatctc
     6421 catgcccgat atctccggtc tggagctgct aagccagctg ccgaaaggta tggcgacgat
     6481 tatgctctcc gttcacgaca gtcctgcgct ggttgagcag gcgcttaacg cgggggcacg
     6541 cggctttctt tccaaacgct gtagcccgga tgaactcatt gctgcggtgc atacggttgc
     6601 cacgggcggc tgttatctga cgccggatat tgccattaaa ctggcatccg gtcgtcagga
     6661 cccgctaacc aaacgtgaac gccaggtggc ggaaaaactg gcgcaaggaa tggcggtgaa
     6721 agagattgcc gccgaactgg gcttgtcacc gaaaacggta cacgtccatc gcgccaatct
     6781 gatggaaaaa ctgggcgtca gtaacgacgt agagctggcg cgccgcatgt ttgatggctg
     6841 gtgatgaaga cgttgttctc ccgcttaatt accgttattg cctgcttttt tatcttctct
     6901 gccgcatggt tttgcctgtg gagtatcagc ctgcatctgg ttgagcgccc tgatatggcg
     6961 gtgctgttat ttccgtttgg tctgcgtctg gggctaatgc tgcaatgccc gcgcggatac
     7021 tggccggtgc tgctgggcgc ggagtggctg ctgatttact ggctaacgca ggcggtcggt
     7081 ttaacccatt ttccgttatt gatgatcggt agtttactga cgttactgcc cgtagcgctg
     7141 atctcgcgct atcgccatca gcgtgactgg cgcaccttgc tgttacaggg ggcggcgtta
     7201 acggcggcgg cgttgttgca gtcgctgccc tggctttggc acggcaaaga gtcgtggaat
     7261 gcgctgttgc tgactttaac tggcggcctg acgctggccc cgatatgtct ggtgttctgg
     7321 cactatctcg ccaataacac ctggctgccg ctcggcccgt cactggtttc tcagccaatc
     7381 aactggcgcg ggcgacatct ggtctggtac ttgctgctgt ttgttatcag tctctggctc
     7441 cagttgggat tgccggacga actgtcgcgc tttacgccat tctgtctggc gctgccgatt
     7501 atcgcgctgg cctggcacta tggttggcaa ggggcgctga ttgcgacgtt gatgaacgcc
     7561 atcgcgctga tcgccagtca aacctggcgc gatcatccgg tggatttatt gctctcgctg
     7621 ctggtgcaaa gtctgacagg gttgttgctt ggcgctggca tccagcggtt gcgtgaactt
     7681 aaccagtcgc tgcaaaagga actggcgcgc aatcagcatc tggctgaacg gttgctggaa
     7741 accgaagaga gcgtgcgccg tgatgtggcg cgtgagctgc atgatgatat cggtcagacc
     7801 atcactgcta ttcgtactca ggcgggcatt gttcagcggc tggcggcaga taacgccagc
     7861 gtgaagcaga gcgggcagct catcgaacaa ctatcgctgg gcgtttacga cgcggtgcgc
     7921 cgtttgttgg gtcggttacg tccgcgccag ttggatgatc tcaccctgga gcaggccatc
     7981 cgctcactga tgcgggaaat ggagctggaa gggcgcggta ttgtcagcca tctcgaatgg
     8041 cgaatcgatg aatcagcgtt aagcgaaaac cagcgcgtga cgctgtttcg tgtctgccag
     8101 gaagggctga acaacattgt gaaacatgct gatgccagcg cggtcaccct gcaaggctgg
     8161 cagcaggatg aacggttgat gctggttatt gaagacgatg gcagcggttt gccgccgggt
     8221 tccgggcaac aaggttttgg cctcaccgga atgcgcgagc gcgtaacggc gctgggtggc
     8281 acattacaca tttcctgtct gcacggcacg cgtgtcagcg tttctctacc tcaacgctat
     8341 gtctaaggtt tgatgatgtt gccgtttctg aaagcgcctg ccgatgcgcc attaatgact
     8401 gataaatatg aaattgatgc ccgctatcgc tactggcgtc ggcatattct gctgaccatc
     8461 tggctgggtt acgcgctgtt ttacttcacg cggaaaagtt ttaacgccgc cgtaccagaa
     8521 atccttgcta acggcgtgct cagccgtagc gatatcggcc tgttagcgac cctgttttac
     8581 attacctatg gcgtgtcgaa gtttgtctcc ggcattgtca gcgatcgctc aaatgcccgt
     8641 tattttatgg ggatagggct tatcgccacg ggcattatca acattctgtt tggcttctcg
     8701 acgtcgctat gggcgtttgc cgtactctgg gtgctgaacg cctttttcca gggctggggt
     8761 tcaccggtgt gtgcgcgtct gttaacggcc tggtattcac gtaccgagcg cggtggttgg
     8821 tgggcattat ggaacacggc gcataacgtc ggcggcgcac tcattcccat tgtgatggca
     8881 gcggttgcac tacattacgg ctggcgtgcc gggatgatga ttgctggttg tatggcgatc
     8941 gtcgtgggaa tttttctctg ctggcggctg cgcgatcgcc cgcaggcgtt aggtttaccg
     9001 gcggtcggtg aatggcgaca cgacgcgctg gagatagctc aacaacaaga aggggcaggg
     9061 cagacgcgta aagagatcct caccaaatat gtgttgctga atccgtatat ctggctgctt
     9121 tcgttttgct atgtgctggt ctatgtggtc cgggcggcga tcaacgactg gggcaatttg
     9181 tatatgtccg agacgctggg cgtcgatctg gtcacggcga atacggcagt gacgatgttt
     9241 gaactgggtg gatttatcgg tgcgctggta gcgggttggg gctcggacaa attgtttaac
     9301 ggcaaccgag ggccgatgaa tttgattttc gccgccggaa ttttgctttc agtcggctcc
     9361 ctgtggctga tgccatttgc cagctacgtg atgcaggcaa cctgcttctt caccattggt
     9421 ttttttgtct ttggcccaca gatgttaatc ggtatggcgg cggcagagtg ttcccacaaa
     9481 gaggcggcag gggcggcgac ggggtttgtc ggcttgtttg cttatctggg ggcgtcgctt
     9541 gctggttggc cgctggcgaa agtactcgat acctggcact ggagcggatt ttttgtggtt
     9601 atctctatcg ccgccgggat ttccgcactg ctgttactgc cctttttgaa cgcccagaca
     9661 ccgcgcgaag cgtgatgcat ctcacctttt cacttcatat ccggcaaaac taagaaattt
     9721 tccaggtttt gcctggacgc tatctcaggc ctgatttgct gctgattttt acaatgcatg
     9781 cctcacgcag gtattcattt caggagtaac ccatgctggc tttcctaaac caggttcgca
     9841 agccgaccct ggaccttccg ctcgaagtgc ggcgcaaaat gtggttcaaa ccgttcatgc
     9901 aatcctacct ggtggtcttt atcggctacc tgacgatgta cctgattcgc aagaacttta
     9961 acatcgcgca gaacgatatg atttcgacct acgggttgag catgacgcag ctggggatga
    10021 tcggcctggg tttctccatc acttatggcg tgggtaaaac gttggtttca tactacgccg
    10081 acggcaaaaa caccaaacaa ttcctgccgt tcatgctgat cctgtctgcc atttgtatgc
    10141 tgggcttcag tgccagtatg ggcagcggct cggttagcct gttcctgatg attgccttct
    10201 actccttaag cggctttttc cagagtaccg gcggttcgtg cagttactcc accatcacca
    10261 aatggacgcc gcgtcgtaaa cgcgggacat tcctcggttt ctggaatatt tctcacaacc
    10321 ttggcggtgc aggcgcagca ggtgtggcgc tgttcggggc aaattacctg ttcgatggcc
    10381 atgtcatcgg catgtttatc ttcccgtcga ttatcgcgct gattgtcggt tttatcggcc
    10441 tgcgttacgg cagcgactcc ccagaatctt atggcctcgg caaagctgaa gaactgttcg
    10501 gcgaggagat cagcgaagag gacaaagaga cagaatctac cgatatgacc aagtggcaga
    10561 tctttgttga gtatgtgctg aaaaacaaag tgatctggct gctgtgcttc gccaacattt
    10621 tcctctatgt ggtacgtatt ggtatcgacc agtggtcaac cgtatacgcg ttccaggaac
    10681 tgaaactctc taaagcggtg gcgattcagg gctttacgct gtttgaagct ggtgcgctgg
    10741 tcggtacgct gctgtggggc tggctctctg acctggcgaa cggtcgccgt ggcctggtgg
    10801 cctgcatcgc gctggcgctg attatcgcca cgctcggtgt gtatcaacat gccagcaacg
    10861 aatatatcta tctggcttct ctctttgcgt tgggtttcct ggtctttggc ccgcaattgt
    10921 tgattggtgt ggctgctgtt ggctttgtac ctaaaaaagc gattggcgct gccgatggta
    10981 ttaaaggcac ctttgcttac ctgattggtg acagctttgc caagttaggt ctgggaatga
    11041 ttgccgatgg gacgccggta ttcggcctta ccggctgggc aggcaccttc gccgcacttg
    11101 atatcgccgc gattggttgt atctgcctga tggcgatagt ggcggtgatg gaagaacgca
    11161 aaatccgccg cgagaaaaaa attcagcagt tgacagtggc ataaacgtaa ctggtgactt
    11221 ttgcccggca tgacgccggg cttttttatt attccgtgac ttccagcgta gtgaaggcaa
    11281 acttctcgcc atcaaatagc ccctgactgg ttagttttag cgcggggatc actggcagag
    11341 aaagaaacgc catctgaata aacggctcat cgggtaacgg accgcattca cgggcggcgg
    11401 ctttcaaggc gtcaatttgt tccgccagcg actgcgccgt gtcggtgctc atcaggccgg
    11461 caatgggcaa cggcagatga ctttggacct ggccgttacg taccacgcac agcccgccgc
    11521 catcctgaat cacctgatag accgccagcg ccatctcttc ggcactgcga ccgatcacca
    11581 caatattatg gctgtcatgg ctgaccgtcg cagccagcgc accttcattc agtccaaagc
    11641 cgccaagcaa accacaagcc ggagccagcc gttgcccgta acgctcaagt acggcaataa
    11701 agcacacatc atcgcgatca aaaccatttt cgctgtagac gctggagtgg gagtgcgtaa
    11761 tcaattcgtt atggatgacg tcaatgaccc gatagcgttt tccgggcgta aattgcaggg
    11821 caaagtcgct ggcggaaact ggctggcggg caatggtgtt gccatatggc ggagcggatt
    11881 gtgccagtct cgccgactct tccgcctgta aggtttgcgc atcaatcggc tcgcctttca
    11941 ccagtacctg ctgcaccgtg accttacgcg catcgctcaa caggacgata tcggcctgct
    12001 tgccgggtgc cagtaagccg aggtgattca gaccaaagtg gcgcgccgtc gaccagctgg
    12061 cgacgcgata tgccacatgc agcggcacat tgtgttgttc gatcaggcgg cgaattaagg
    12121 catcgatgtg tccttcatgg gcgatctccc acgggttacg gtcatcggta cagagcatgc
    12181 attgcgggct gttaaattcg ttgatcaacg gtgccagcgc gttgagattg cgggcagcgg
    12241 acccttcgcg gatcatcaac gacatgccga gttgtaattt ccggcgtcct tcttccagct
    12301 gataactttc gtggcagttt tcaatacccg cagtaatata ggcgttaagt tctttaccac
    12361 ccaaacccgg gcagtgaccg tccagcgtca ggtggcgaaa tgcatccagt ttatcgagca
    12421 gcgcattctg cccgctaatt acgccagggt agtccatcat ttctgcaagg ccggtaacct
    12481 gcggatggtc ccgccaggcg agcatctgtt caagggtaaa actggcaccg ttaacatcgc
    12541 agccttccag ggcgggtacg caagagctga cctgtaagta ctggttttgc cttgcctgtt
    12601 cggcacagcg ggcaaaccag gcgaatccgg cttctcccat cacgttgacg atttcatgag
    12661 ggtcgcaaat aacggtcgtc aggccgcgcg gcagggtagc ggtttcaaag gtgaccggcg
    12721 tcatcatgct ggattcaata tgcaggtgag catcaataaa ccctggcacc gccgttgcgc
    12781 cgcgagcatc aatccgctgc aaagccggag catcagcgta ttctgcgcca acaccggcaa
    12841 tgtaacgtcc tttaatcaca attgggccgg aaatttctcc gccattgatc aggtcgagaa
    12901 tagagacatt atcaataata taatcggcaa cagcgtcgcc acgggaaacg gctaacaatt
    12961 cctggtattc agcccggcta atgtgatgaa atttatggtt aatggaatta ttcatatttt
    13021 tctcattttg attttatcaa tttgattatt atttatcata aagaaacgtc gcgagattat
    13081 taaagaatat ctattaatgt gcaattgaaa tgtgataatt atcactgaac cgttgttgtc
    13141 atttgtttta caaaagcaag ggattaaatc tcctccaatg gacaaaaaaa tgaataatga
    13201 caataccgat tacgtgagta atgaatcagg gacgctttcg cgattattta aactacctca
    13261 gcatgggacc accgtccgca cagaattgat tgcggggatg accacttttt taaccatggt
    13321 gtacatcgtt tttgtgaacc cgcaaatcct cggcgcggca caaatggacc cgaaagtggt
    13381 gtttgttacc acctgtttga ttgccggtat cggcagtatt gcgatgggga tatttgctaa
    13441 cttacccgtg gcgctggctc cggcaatggg gctgaacgcc ttctttgcct tcgtggtcgt
    13501 gggggcgatg ggcatctcct ggcagaccgg gatgggcgca atattctggg gcgcagttgg
    13561 actatttttg ctcacgctgt ttcgtatccg gtactggatg atctccaaca ttcccttaag
    13621 tttacgtatt ggtatcacca gcggaattgg attatttatc gccttaatgg gattaaaaaa
    13681 tactggcgtt attgtcgcca ataaagacac gctggtgatg attggcgatt taagttctca
    13741 cggcgtgttg ttaggtattt tagggttttt tattataacc gtgttgtcat cacgtcattt
    13801 tcatgccgcg gtgctggttt ctattgtggt gacgtcttgc tgtggattat ttttcggtga
    13861 tgttcatttt agcggcgtct attccattcc gcctgatatt agcggcgtca ttggtgaagt
    13921 agatttgagc ggcgcgttaa cacttgaact cgccggtatc attttctcct ttatgctgat
    13981 caacctattt gattcatcag gaacattaat tggtgtaact gataaagcgg gcttaataga
    14041 tggtaacggt aaattcccca atatgaataa ggcgctgtat gttgatagcg tcagttcggt
    14101 ggcgggtgcg tttatcggca cctcgtctgt tactgcctat attgaaagta cttctggtgt
    14161 ggcagtcggt ggccgcacgg ggctgactgc ggttgtggtt ggcgttatgt tcctgttggt
    14221 tatgttcttc tcaccgctgg tggcgatggt tcctccttac gcaaccgccg gagcgttaat
    14281 ctttgttggc gtgctgatga cttcgagcct ggcgcgcgtt aactgggatg attttaccga
    14341 atcggtgcct gcgtttatta ccacggtgat gatgcccttt actttctcga tcaccgaagg
    14401 gattgcactc ggctttatgt cgtactgcat catgaaagtg tgcaccgggc gctggcgcga
    14461 tctgaacctg tgtgtggtgg tggtcgcagc tctgtttgca ctgaagatta ttctggtgga
    14521 ttagtaactg gcgagggttt ccagatatca tgagttctga ttacgcagga gaactcatga
    14581 tctggataat gctcgccacg ctggcggtag tgtttgtggt tggttttcgg gtgctgacat
    14641 ccggggccag aaaagcgatt cgccgtctca gtgatcggct gaatatcgat gtcgtacccg
    14701 tggagtcgat ggtcgatcaa atgggaaagt cagccggtga cgaattttta cgttatttgc
    14761 atcgcccgga tgagtcgcac ctgcaaaacg ccgcgcaggt gttgctcatc tggcaaattg
    14821 tcattgtcga tggtagcgaa cagaacctgc tgcaatggca tcggatttta caaaaagccc
    14881 gtcttgccgc gccgattacc gatgctcagg tcaggctggc gctgggtttt ctgcgcgaaa
    14941 ccgaacctga aatgcaggat attaatgctt ttcagatgcg ctataacgcg ttctttcagc
    15001 ctgccgaggg cgttcactgg ctgcattaaa accgcttcgt cttatcagcc tacagaccgc
    15061 gcctgacctg tcgggtggat aagacgttca cgccgcatcc ggtaatcttt gccctgttcc
    15121 gtttcgatct taactccagc tcaagcaaca ccgtaaagtt gcaaaaacgt taaatgcgtc
    15181 acacatttca atgttaaagt ggtcggcttt tcccctgaaa catgccacgg gtaacaccat
    15241 gagtgaattt attgccgaaa accgcggcgc ggatgccatc acccgaccga actggtcagc
    15301 cgttttctcg gtggcgtttt gtgtcgcctg tctgattatc gttgagtttt tgcccgtcag
    15361 tttgttgacg ccaatggccc aggatttagg catttcggaa ggggttgccg ggcaatcggt
    15421 gaccgtgacc gcctttgtgg caatgtttgc cagtttgttt attacccaga caattcaggc
    15481 tactgaccgc tgctacgttg ttattttgtt tgccgttttg ctgacgctct cctgcttgct
    15541 ggtttccttt gctaactcat tcagtttgct tttaatcggt cgagcctgtc tggggctggc
    15601 gctgggcggg ttctgggcga tgtcggcgtc gctgaccatg cgtctggtgg cgccgcgtac
    15661 ggtgccgaag gcgctgtcgg tgatcttcgg cgcggtttct attgcgctgg tgattgccgc
    15721 gccgttgggc agttttttag gcgagcttat cggttggcgc aatgtcttta atgcggcggc
    15781 ggtgatgggc gtgctgtgta ttttctggat tatcaaatca ttgccttcac tgccaggcga
    15841 accctcgcat cagaaacaaa atactttccg cttattacaa cgtccgggtg tgatggcagg
    15901 gatgatcgcc atcttcatgt ctttcgccgg gcagtttgct ttcttcacgt atattcgccc
    15961 ggtgtatatg aacctggcgg gattcggcgt ggatggctta acgctggtgc tgttgagttt
    16021 tggtatcgcc agctttattg gtacgtcgct ttcgtcgttc attcttaaac gttcggtaaa
    16081 actggcctta gcaggcgcgc cgttaatact ggctgtgagt gcgttggtac tgacgttgtg
    16141 gggaagcgat aaaatcgttg ctaccggcgt ggcgattatc tgggggctaa cttttgcatt
    16201 ggttcccgtc ggctggtcaa cgtggatcac ccgctcgctg gccgatcagg cagaaaaagc
    16261 cgggtctatt caggtggcgg ttattcagct tgctaatacc tgtggcgcgg caatcggcgg
    16321 ttatgcgctg gataatattg gtttgacttc gccgttgatg ttgtccggca cattgatgtt
    16381 gctgactgca ttgttggtta ctgcaaaggt gaaaatgaag aaatcctgat atcaggtaaa
    16441 gaagcgttgg tcagtagttg ttgctgttct tacatatccg ggcattctac cttacccaac
    16501 gcttcccaat aattgctctg attattacgt tccatcgcca cgatggcct
//
LOCUS       DADMHM010000075        16455 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.076, whole genome shotgun sequence.
ACCESSION   DADMHM010000075 DADMHM010000000
VERSION     DADMHM010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16455)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16455)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16455
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.076"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            16..100
                     /locus_tag="JN125_002156"
     tRNA            16..100
                     /locus_tag="JN125_002156"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:50..52,aa:Tyr,seq:gta)
     gene            148..279
                     /locus_tag="JN125_002157"
     ncRNA           148..279
                     /ncRNA_class="other"
                     /locus_tag="JN125_002157"
                     /product="RtT sRNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00391"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="rtT sRNA, processed from tyrT transcript; Derived
                     by automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00391"
     gene            complement(463..1140)
                     /gene="narI"
                     /locus_tag="JN125_002158"
     CDS             complement(463..1140)
                     /gene="narI"
                     /locus_tag="JN125_002158"
                     /EC_number="1.7.99.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="respiratory nitrate reductase subunit gamma"
                     /protein_id="HAY8871937.1"
                     /translation="MQFLNMFFFDIYPYIAGAVFLIGSWLRYDYGQYTWRAASSQMLD
                     RKGMNLASNLFHIGILGIFVGHFFGMLTPHWMYEAWLPIEVKQKMAMFAGGASGVLCL
                     IGGVLLLKRRLFSPRVRATTTGADILILSLLVIQCALGLLTIPFSAQHMDGSEMMKLV
                     GWAQSVVTFHGGASQHLDGVAFIFRLHLVLGMTLFLLFPFSRLVHIWSVPVEYLTRKY
                     QLVRARH"
     gene            complement(1140..1850)
                     /gene="narJ"
                     /locus_tag="JN125_002159"
     CDS             complement(1140..1850)
                     /gene="narJ"
                     /locus_tag="JN125_002159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase molybdenum cofactor assembly
                     chaperone"
                     /protein_id="HAY8871938.1"
                     /translation="MIELVIVSRLLEYPDAALWQHQQEMFEAIAASKNLSKEDAHALG
                     IFLRDLTAMDPLDAQAQYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLLAQYEQHG
                     LQLNSRELPDHLPLYLEYLSQLPQSEAVEGLKDIAPILALLSARLQQRESRYAVMFDL
                     LLKLANTAIDSDKVAEKIADEARDDTPQALDAVWEEEQVKFFADKGCGDSAITAHQRR
                     FAGAVAPQYLNITTGGQH"
     gene            complement(1847..3385)
                     /gene="narH"
                     /locus_tag="JN125_002160"
     CDS             complement(1847..3385)
                     /gene="narH"
                     /locus_tag="JN125_002160"
                     /EC_number="1.7.99.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase subunit beta"
                     /protein_id="HAY8871939.1"
                     /translation="MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGVEYAWFNNV
                     ETKPGQGFPTDWENQEKYKGGWIRKINGKLQPRMGNRAMLLGKIFANPHLPGIDDYYE
                     PFDFDYQNLHTAPEGSKSQPIARPRSLITGERMAKIEKGPNWEDDLGGEFDKLAKDKN
                     FDNIQKAMYSQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCR
                     GWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYD
                     ADAIERAASTENEKDLYQRQLEVFLDPNDPKVIEQAIKDGIPLSVIEAAQQSPVYKMA
                     MEWKLALPLHPEYRTLPMVWYVPPLSPIQSAVDAGELGSNGILPDVESLRIPVQYLAN
                     LLTAGDTKPVLRALKRMLAMRHYKRAETVDGKVDTRALEEVGLTEAQAQEMYRYLAIA
                     NYEDRFVVPSSHRELAREAFPEKNGCGFTFGDGCHGSDTKFNLFNSRRIDAIDVTSKT
                     EPHP"
     gene            complement(3403..7125)
                     /locus_tag="JN125_002161"
     CDS             complement(3403..7125)
                     /locus_tag="JN125_002161"
                     /EC_number="1.7.99.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase subunit alpha"
                     /protein_id="HAY8871940.1"
                     /translation="MSKFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDK
                     IVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWY
                     LYSANRLKYPMMRKRLMKMWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVR
                     SSWQEVNELIAASNVYTIKNYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFY
                     DWYCDLPPASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGT
                     KTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPSQYFTDYVRRY
                     TDMPMLVMLEERDGYYAAGRMLRAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIG
                     FRWGEKGKWNLEQRDGKTGEETELQLSLLGSQDEIAEVGFPYFGGDGTEHFNKVELEN
                     VLLHKLPVKRLQLADGSTALVTTVYDLTLANYGLERGLNDVNCATSYDDVKAYTPAWA
                     EQITGVSRSQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLIFCG
                     CVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETV
                     TAEELLSPMADKSRYTGHLIDFNVRAERMGWLPSAPQLGTNPLTIAGEAEKAGMNPVD
                     YTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGIQ
                     GKDLGQQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDM
                     NTSDMHPFIHPLSAAVDPAWEAKSDWEIYKAIAKKFSEVCVGHLGKETDIVTLPIQHD
                     SAAELAQPLDVKDWKKGECDLIPGKTAPHIMVVERAYPATYERFTSIGPLMEKIGNGG
                     KGIAWNTQSEMDLLRKLNYTKAEGPAKGQPILNTAIDAAEMILTLAPETNGQVAVKAW
                     AALSEFTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNV
                     HELIPWRTLSGRQQLYQDHQWMRDFGESLLVYRPPIDTRSVKEVIGQKSNGNPEKALN
                     FLTPHQKWGIHSTYSDNQLMLTLGRGGPVVWLSEADAKELGIADNDWIEVYNSNGALT
                     ARAVVSQRVPAGMTMMYHAQERIVNLPGSEITGQRGGIHNSVTRITPKPTHMIGGYAH
                     LAYGFNYYGTVGSNRDEFVVVRKMKNIDWLDGEGND"
     gene            complement(7641..9032)
                     /gene="narK"
                     /locus_tag="JN125_002162"
     CDS             complement(7641..9032)
                     /gene="narK"
                     /locus_tag="JN125_002162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate transporter NarK"
                     /protein_id="HAY8871941.1"
                     /translation="MSHSSAPERATGAVITDWRPEDPAFWQQRGQRIASRNLWISVPC
                     LLLAFCVWMLFSAVAVNLPKVGFNFTTDQLFMLTALPSVSGALLRVPYSFMVPIFGGR
                     RWTAFSTGILIIPCVWLGFAVQDTSTPYSVFIIISLLCGFAGANFASSMANISFFFPK
                     QKQGGALGLNGGLGNMGVSVMQLVAPLVVSLSIFAVFGSQGVKQPDGTELYLANASWI
                     WVPFLAIFTIAAWFGMNDLATSKASIKEQLPVLKRGHLWIMSLLYLATFGSFIGFSAG
                     FAMLSKTQFPDVQILQYAFFGPFIGALARSAGGALSDRLGGTRVTLVNFILMAIFSGL
                     LFLTLPTDGQGGSFMAFFAVFLALFLTAGLGSGSTFQMISVIFRKLTMDRVKAEGGSD
                     ERAMREAATDTAAALGFISAIGAIGGFFIPKAFGSSLALTGSPVGAMKVFLIFYIACV
                     VITWAVYGRHSKK"
     gene            9371..11167
                     /gene="narX"
                     /locus_tag="JN125_002163"
     CDS             9371..11167
                     /gene="narX"
                     /locus_tag="JN125_002163"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite two-component system sensor
                     histidine kinase NarX"
                     /protein_id="HAY8871942.1"
                     /translation="MLKRCLSPLTLVNQVALIVLLSTAIGLAGMAVSGWLVQGVQGSA
                     HAINKAGSLRMQSYRLLAAVPLSEKDKPLIKEMEQTAFSAELTRAAERDEQLAQLQGL
                     QDYWRNELIPALMRAQNRETVSADVSQFVAGLDQLVSGFDRTTEMRIETVVLVHRVMA
                     VFMALLLVFTIIWLRARLLQPWRQLLAMASAVSHRDFTQRANISGRNEMAMLGTALNN
                     MSAELAESYAVLEQRVQEKTAGLEHKNQILSFLWQANRRLHSRAPLCERLSPVLNGLQ
                     NLTLLRDIELRVYDTDDEENHQEFTCQPDMTCDDKGCQLCPRGVLPVGDRGTTLKWRL
                     ADSHTQYGILLATLPQGRHLSHDQQQLVDTLVEQLTATLALDRHQERQQQLIVMEERA
                     TIARELHDSIAQSLSCMKMQVSCLQMQGDALPASSRELLSQIRNELNASWAQLRELLT
                     TFRLQLTEPGLRPALEASCEEYSAKFGFPVKLDYQLPPRLVPSHQAIHLLQIAREALS
                     NALKHSQASEVVVTVAQNDNQVKLTVQDNGCGVPENAIRSNHYGMIIMRDRAQSLRGD
                     CRVRRRESGGTEVVVTFIPEKTFTDVQGDTHE"
     gene            11160..11810
                     /gene="narL"
                     /locus_tag="JN125_002164"
     CDS             11160..11810
                     /gene="narL"
                     /locus_tag="JN125_002164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator NarL"
                     /protein_id="HAY8871943.1"
                     /translation="MSNQEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQG
                     IELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRG
                     ADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRTTTERDVNQLTPRE
                     RDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF"
     gene            complement(11811..13205)
                     /gene="ychO"
                     /locus_tag="JN125_002165"
     CDS             complement(11811..13205)
                     /gene="ychO"
                     /locus_tag="JN125_002165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415738.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter invasin YchO"
                     /protein_id="HAY8871944.1"
                     /translation="MSRFVPRIIPFYLLLLVAGGTANAQSTFEQKAANPFDNNNDGLP
                     DLGMAPENHDGEKHFAEIVKDFGETSMNDNGLDTGEQAKAFALGKVRDALSQQVNQHV
                     ESWLSPWGNASVDVKVDNEGHFTGSRGSWFVPLQDNDRYLTWSQLGLTQQDNGLVSNV
                     GVGQRWARGNWLVGYNTFYDNLLDENLQRAGFGAEAWGEYLRLLANFYQPFAAWHEQT
                     ATQEQRMARGYDLTARMRMPFYQHLNTSVSLEQYFGDRVDLFNSGTGYHNPVALSLGL
                     NYTPVPLVTVTAQHKQGESGENQNNLGLNLNYRFGVPLKKQLSAGEVAESQSLRGSRY
                     DNPQRNNLPTLEYRQRKTLTVFLATPPWDLKPGETVPLKLQIRSRYGIRQLIWQGDTQ
                     ILSLTPGAQANSAEGWTLIMPDWQNGEGASNHWRLSVVVEDNQGQRVSSNEITLTLVE
                     PFDALSNDELRWEP"
     gene            13389..13742
                     /gene="ychN"
                     /locus_tag="JN125_002166"
     CDS             13389..13742
                     /gene="ychN"
                     /locus_tag="JN125_002166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsrE/F sulfur relay family protein YchN"
                     /protein_id="HAY8871945.1"
                     /translation="MQKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSD
                     AVTAGLRGQKPGEGYNIQQMLEILTAQNVPVKLCKTCTDGRGISTLPLIDGVEIGTLV
                     ELAQWTLSADKVLTF"
     gene            complement(13786..14481)
                     /locus_tag="JN125_002167"
     CDS             complement(13786..14481)
                     /locus_tag="JN125_002167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415736.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamylcyclotransferase"
                     /protein_id="HAY8871946.1"
                     /translation="MITRDFLMNADCKTAFGAIEESLLWSAEQRAASLAATLACRPDE
                     GPVWIFGYGSLMWNPALEFTESCTGTLVGWHRAFCLRLTAGRGTAHQPGRMLALKEGG
                     RTTGVAYRLPEETLEQELTLLWKREMITGCYLPTWCQLDLDDGCTVNAIVFIMDPRHP
                     EYESDTRAQVIAPLIAAASGPLGTNAQYLFSLEQELIKLGMQDDGLNDLLVSVKKLLA
                     ENYPDGVLRPGFA"
     gene            complement(14639..14869)
                     /gene="chaB"
                     /locus_tag="JN125_002168"
     CDS             complement(14639..14869)
                     /gene="chaB"
                     /locus_tag="JN125_002168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative cation transport regulator ChaB"
                     /protein_id="HAY8871947.1"
                     /translation="MPYKTKSDLPESVKHVLPSHAQDIYKEAFNSAWDQYKDKDDRRD
                     DASREETAHKVAWAAVKHEYAKGDDDKWHKKS"
     gene            15139..16239
                     /gene="chaA"
                     /locus_tag="JN125_002169"
     CDS             15139..16239
                     /gene="chaA"
                     /locus_tag="JN125_002169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-potassium/proton antiporter ChaA"
                     /protein_id="HAY8871948.1"
                     /translation="MSNAQEAVKTRHKETSLIFPVLALVVLFLWGSSQTLPVVIAINL
                     LALIGILSSAFSVVRHADVLAHRLGEPYGSLILSLSVVILEVSLISALMATGDAAPTL
                     MRDTLYSIIMIVTGGLVGFSLLLGGRKFATQYMNLFGIKQYLIALFPLAIIVLVFPMA
                     LPAANFSTGQALLVALISAAMYGVFLLIQTKTHQSLFVYEHEDDSDDDDPHHGKPSAH
                     SSVWHAIWLIIHLIAVIAVTKMNASPLETLLDSMNAPVAFTGFLVALLILSPEGLGAL
                     KAVLNNQVQRAMNLFFGSVLATISLTVPVVTLIAFMTGNELQFALGAPEMVVMVASLV
                     LCHISFSTGRTNVLNGAAHLALFAAYLMTIFA"
BASE COUNT         3974 a         4420 c         4109 g         3952 t
ORIGIN      
        1 atttgaatta cccctggtgg ggttcccgag cggccaaagg gagcagactg taaatctgcc
       61 gtcatcgact tcgaaggttc gaatccttcc cccaccacca tcacttttca aaagtccgta
      121 aactctcaaa cgaatccgca attaaatatt ctgcccaagc ggggaaggat gagaagcttc
      181 gaccaaggtt cgacttgagc gccagcgaga gagcgttgcc gcaggcaacg acccgaaggg
      241 cgaagcgcgc agcgctgagt aatccttccc ccaccaccat cgcttccttg aataatcaaa
      301 acctgttact ccgagctaat tttgcccgat ggcaccacgt ttaccgggcc tacaatatcc
      361 tcccctgtag gtcggataag cgaagcgcat ccgacaactc accccgcacc gtgcccataa
      421 aaaaaccccg ccgaagcagg gtctatgtga actaaaattc gtttagtgac gagcgcgcac
      481 cagctggtac ttacgtgtca gatactccac cggtacgctc cagatgtgta ccagacgcga
      541 gaacgggaac agcaggaata acgtcatccc cagcaccagg tgcagacgga agataaacgc
      601 cacaccatcg aggtgttgag aagcgccacc gtggaaggtc accaccgact gcgcccagcc
      661 aaccagtttc atcatctcgc taccgtccat atgctgagcg gagaacggaa tggtcaacag
      721 gcccagcgcg cactggataa cgagcagcga caggatcagg atatccgctc cggtagtggt
      781 tgcacgcacg cgtgggctga acagacgacg cttcagcaac agcacgccgc caatcagaca
      841 cagcacgccg ctggcaccac cagcaaacat cgccattttc tgtttcactt caatcggcag
      901 ccaggcttca tacatccagt gcggcgtcag cataccgaag aagtgaccaa caaaaatccc
      961 cagaataccg atatggaaca ggttcgacgc caggttcatc cctttgcgat ccagcatctg
     1021 gctggacgcc gcgcgccagg tgtactgccc gtagtcataa cgcagccagc taccaatcag
     1081 gaagaccgcc ccggctatgt acgggtagat atcaaagaag aacatattca ggaattgcat
     1141 tagtgctgtc ctccggtggt gatattcaga tattgcggcg cgacggcacc ggcaaagcga
     1201 cgctgatgag cagtgattgc tgaatcaccg cagcctttgt cagcaaagaa tttaacctgc
     1261 tcttcttccc agacagcatc cagcgcctgc ggcgtatcat cgcgcgcttc gtcggcaatt
     1321 ttttccgcca ctttgtcgct gtcgatagcg gtattggcca atttcagcag cagatcaaac
     1381 atcacggcat aacggctttc acgctgttgc agacgcgcgc tcagcaatgc cagaatcggc
     1441 gcgatatctt tcaaaccttc cacggcttcg ctttgcggca gctgcgacag gtactccaga
     1501 tacagcggca gatggtccgg taattcgcgg ctgtttaact gcaagccgtg ctgctcgtac
     1561 tgcgccagca ggtccaccat cgcctggccg cggtcacggg attcaccgtg aacatgttca
     1621 aatagcaaca gtgacgtggc gcggccacgg tcgaacagtt cgctgtactg ggcctgggca
     1681 tcgagcggat ccatcgccgt taaatcgcgc aggaaaatgc ccagcgcatg ggcatcttct
     1741 ttcgacagat ttttcgacgc agcaatcgcc tcaaacatct cttgttgatg ctgccataag
     1801 gcagcatccg gatattcaag gagacgcgat acaatcacga gttcgatcat ggatgcggct
     1861 ccgttttgct ggtcacatcg atggcatcga tacgacggct gttgaacaga ttgaatttgg
     1921 tatctgagcc gtggcagcca tcaccaaagg taaagccgca gccatttttc tccgggaagg
     1981 cttcccgtgc cagttcacga tgactactcg gcaccacaaa gcgatcttcg tagttagcaa
     2041 tcgccagata acggtacatc tcctgtgcct gggcttcggt cagaccgacc tcttccagcg
     2101 cacgggtatc aactttaccg tcaacggttt cagcacgttt gtaatgacgc atcgccagca
     2161 tacgtttcag tgcgcgcagt accggtttgg tatcaccggc ggtcagcaga ttcgccagat
     2221 actgtaccgg aatacgcaag ctttcgacgt ctggcagaat gccgttgcta cccagctcac
     2281 ccgcgtctac tgcagactga atcggagaca gaggcggcac gtaccagacc atcggcagtg
     2341 tgcgatattc tggatgcagc ggcagcgcca gtttccattc cattgccatt ttataaaccg
     2401 gcgactgctg tgcggcttca ataacgctca gcggaatacc gtctttaatc gcctgctcga
     2461 tgactttcgg atcgttcgga tcgaggaaca cctccagctg acgctggtaa agatctttct
     2521 cgttctcggt gctggctgca cgttcaatcg cgtcggcatc gtacagcagc acgccaagat
     2581 aacggatacg accgacacag gtttctgagc acacggtcgg ctgacccgct tcaatacgcg
     2641 gatagcagaa gatgcacttc tcagacttac cgctcttcca gttgaagtag atttttttgt
     2701 acgggcatcc ggtgatgcac atacgccagc cacggcattt atcctggtcg atcaggacga
     2761 tgccatcttc ttcacgcttg taaatcgcac cgctcgggca ggtcgccaca catgccgggt
     2821 tcaggcagtg ttcgcacagg cgcggcaaat acatcataaa ggtgttttcg aactggctat
     2881 acatcgcctt ctggatgttg tcgaagttct tgtctttcgc cagtttgtca aactcaccac
     2941 ccaggtcatc ttcccagttc ggcccttttt cgattttcgc catccgttcc ccggtaatca
     3001 gcgaacgggg acgggcaatc ggctgcgatt tgctgccttc cggcgcggta tgcaggttct
     3061 gatagtcaaa atcgaacggc tcgtaataat cgtcgatccc cggcagatgc gggttagcga
     3121 agattttacc cagcaacatg gcacggttac ccatgcgcgg ctgcagtttg ccgttgattt
     3181 tacggatcca gccgcctttg tatttttcct ggttttccca gtcagtcggg aagccctgac
     3241 ccggcttggt ttccacgttg ttgaaccacg cgtactccac gccttcacgg ctggtccaga
     3301 cgtttttaca ggtaactgaa caggtgtggc agccgatgca cttatcgaga ttcagcacca
     3361 tgccgacttg tgaacgaatt ttcattttac gctctcctgt acctagtcat tgccttcgcc
     3421 atctaaccag tcaatgttct tcatcttacg cactacaaca aactcatcgc ggttagaacc
     3481 tacggtgccg tagtagttaa agccgtatgc cagatgggca tagccaccaa tcatatgcgt
     3541 cggtttcggc gtgatacggg tgaccgagtt gtggatcccc ccacgctggc cagtaatttc
     3601 cgaacccggc aggttaacga tacgttcctg cgcgtggtac atcatggtca tccctgccgg
     3661 aacacgctgg ctgacaaccg cacgggcagt cagcgcaccg ttgctgttgt aaacttcaat
     3721 ccagtcgtta tcggcaatgc ccagctcttt ggcatcggct tcgctcagcc agaccaccgg
     3781 gccaccgcga cctaaggtca gcatcaactg gttgtcgctg taggtggagt ggatccccca
     3841 cttctggtgc ggcgtcagga agttgagcgc tttttccggg ttgccgttgg atttctggcc
     3901 tatcacttct ttcaccgaac gggtgtcgat cggcggacga taaaccagca ggctttcacc
     3961 gaaatcacgc atccactggt gatcctgata cagttgctga cgaccagaga gcgtacgcca
     4021 tgggatcagc tcgtgaacgt tggtgtaacc ggcgttgtaa gaaacgtgtt catcttccag
     4081 accagaccag gtcgggctgg agataatttt gcgcggctgt gcctgaatat cgcggaagcg
     4141 gatcttctcg tcttctttat tcagcgccag atgcgtatgg tcacgaccgg taaattcgct
     4201 cagggcagcc caggctttca cggctacctg accgttggtt tccggtgcca gtgtcaggat
     4261 catctctgcc gcatcaattg cggtgttcag tatcggctgg cctttcgccg gaccttccgc
     4321 tttggtgtag ttgagcttac gcagcagatc catctcgctc tgggtgttcc aggcaatccc
     4381 tttaccgcca ttaccgattt tctccatcag cgggccgata gaggtaaagc gttcgtaagt
     4441 cgccggataa gcgcgctcta cgaccataat gtgtggcgcg gttttacctg ggatcaggtc
     4501 gcactcgcct tttttccagt ctttcacatc cagcggctgc gccagttcag cggcagagtc
     4561 atgctggata ggcagcgtga cgatgtcggt ttctttaccc agatggccga cgcacacttc
     4621 ggagaatttc ttcgcgatgg ctttgtagat ttcccagtcg cttttcgctt cccaggccgg
     4681 atcgaccgcc gcagacagcg ggtgaataaa cggatgcata tccgaagtat tcatgtcgtc
     4741 tttttcgtac caggtcgccg tcggcaaaat gatgtcggaa tagagacagg tgctcgacag
     4801 acggaagtcc agcgtaacca ccagatccag cttgccttcc agaccattgt cctgccagtc
     4861 cacttcttcc ggcttcacgc cgccctgttg ccccagatct ttaccctgga taccgtgctc
     4921 cgtccccagc aggtacttga gcataaactc atgaccttta ccggaagaac cgagcaggtt
     4981 agaacgccag atgaacaggt tgcgcgggtg gtttttaccg ttttctggtt gttctgccgc
     5041 aaaacggatg gaaccctctt tcagggattt caccgtatag tccaccggat tcatcccggc
     5101 tttttccgct tcgccagcga tagtcagcgg gttagtgcct aactgcggtg cagacggcag
     5161 ccagcccatg cgttccgcac ggacgttaaa gtcgatcaag tgtccggtat agcgggattt
     5221 gtccgccatc ggtgacagca actcttccgc cgtgacggtt tcataacgcc actggctgga
     5281 gtggttatag aaataagaag tgctgttcat gtgacgcgcc ggacgctgcc agtcaagggc
     5341 aaacgccagc ggctgccagc cggtttgcgg acgcagtttt tcctgaccta catagtgcgc
     5401 ccagccgccc ccgctctgac cgacacagcc gcagaaaatc agcatgttga tcagaccacg
     5461 atagttcata tcgaggtgat accagtggtt cagccccgca ccaacgataa tcatcgaacg
     5521 accgtgcgtt ttatcagcgt tatcggcaaa ttcacgggcg atgcgaataa tctggctgcg
     5581 agaaacgccg gtaatctgct cggcccaggc cggggtataa gctttcacat cgtcatagct
     5641 ggttgcacag ttaacgtcgt tcaggccacg ttccagaccg tagtttgcca gcgtcagatc
     5701 ataaacggtg gtcaccaggg cggtgctgcc atcagccagt tgcaggcgtt tcaccggcag
     5761 tttgtgcagc agcacgtttt ccagttccac tttgttgaag tgttccgtgc cgtcgccacc
     5821 aaagtacggg aagcctacct cagcgatctc atcttggcta cccagcaggc tcagttgcag
     5881 ctcggtttct tcgccagttt tgccgtcgcg ctgctcaaga ttccatttgc ccttctcgcc
     5941 ccagcggaag ccaatagaac cgttcggcgc aaccatttcg ccattggtat taaaggcgac
     6001 agttttccat tccggattgt tttcctggcc cagcgcatca accagatcag cagcgcgcag
     6061 catacgacct gcagcgtagt aaccgtcgcg ttcttccagc atcaccagca tcggcatgtc
     6121 ggtgtagcga cgcacatagt cggtgaaata ctggcttggg ttgtcgaggt ggaattcacg
     6181 cagcattacg tggcccatcg ccagcgccat tgccgcatcg gtgccctgtt tcggtgccag
     6241 ccacagatcg cacagtttgg cgatttcagc gtagtctggt gtgacggcaa cagttttggt
     6301 gcctttgtaa cgcacttcag taaagaagtg agcatccggg gtacgcgtct gcggcacgtt
     6361 tgaaccccag gcgatgatgt agctggagtt ataccagtca gcagattccg gtacgtcagt
     6421 ttgctcgccc caggtttgcg gagacgcagg aggcaggtcg cagtaccagt cgtagaagct
     6481 taagcaagta ccgccaatca gcgagagata gcgtgcaccc gatgcgtaag aaaccatcga
     6541 cattgccgga attggcgaga aaccagcaac acggtccggg ccgtagtttt tgatggtgta
     6601 aacgttagat gcggcgatca gttcgttcac ctcctgccag gaagaacgaa caaatccacc
     6661 gcgtccacgc gcctgcttaa agcttttcgc tttatcggcg tcttcaatga tagaagccca
     6721 tgcctcaacc ggatcgctat gcagcgcctt cgcttcacgc cacattttca tcaggcgttt
     6781 gcgcatcatc gggtatttca ggcggttggc actgtaaaga taccaggagt agctggcacc
     6841 gcgcgggcag ccgcgaggtt catggtttgg cagatccgga cgggtacgcg gatagtcagt
     6901 ctgctgggtt tcccaggtga ccagaccgtt tttgacgtag attttccagc tgcaggagcc
     6961 ggtgcagttt accccgtggg tagagcggac gattttgtca tgctgccaac gctggcgata
     7021 tccatcctcc cagtcacggt tggtattgag aagctggcca tgcccatcgg caaaggtttc
     7081 acccttctgt ttgaagtagc gaaaccggtc caggaattta ctcatcggtt ttctcctgtg
     7141 ggagcctgtc ggccctctga taaatcgaca ttgctaatgt ttaagggcaa ggtaacgctc
     7201 tgaaacagcg tgggaattga taacgatcaa gagtgatggg gatgaaaaat aaagtaaatt
     7261 cctaagatac ccctttagga taattaacag ccaccacata acagactgta aattaagacg
     7321 ttttatacct gtagttattt aaactattaa gatttttatg cagatgggta ttaaggagta
     7381 ttccccatgg gtaacatatt aatggctctt aatgaaatcc ggcgaaataa accatataac
     7441 attagtatgt tgtaactaaa taacgcttaa aaaaagcgcg acatcatgcc gcgcaaagga
     7501 taatcaaata ttttactcta tataattcgg tttacaggaa ggcggcaagt gaatgaatcc
     7561 caggagctta ctaaagtaag tgactggggt gaatgaacgc agccgcagca catgtaaccc
     7621 gaagtatgac gagtaacggt ttatttttta gaatgccgac catataccgc ccaggtaatc
     7681 actacgcagg cgatatagaa aatcaaaaat accttcattg cgccgactgg cgaacccgtt
     7741 aatgccagcg agctaccaaa cgctttcggg ataaagaagc caccaatcgc gccaatcgca
     7801 gagatgaaac ccagcgccgc cgccgtgtcg gttgccgctt cacgcatcgc acgttcgtca
     7861 gaaccccctt ctgctttcac gcgatccatt gtcagtttac ggaagatcac tgaaatcatc
     7921 tggaaagtgg aaccactacc cagcccagct gtcaggaaca gcgccaggaa gaccgcgaag
     7981 aacgccatga agcttccgcc ctgcccgtca gtcggtaagg tcaggaacag caggccgctg
     8041 aaaatcgcca tcagaataaa gttcaccagc gtgacacgag ttccgcccag acggtcagat
     8101 aatgcaccac ctgcagaacg cgccagcgca ccaataaacg gcccgaagaa agcgtattgc
     8161 agaatctgaa catccgggaa ctgcgttttt gacagcattg caaagcccgc ggagaagccg
     8221 atgaaggagc cgaaggttgc cagatacagc aggctcataa tccacagatg accccgtttg
     8281 agtaccggca actgctcctt gatggaggct ttcgaggtag caagatcgtt catgccaaac
     8341 cacgccgcaa tggtgaagat ggcaaggaac ggcacccata tccaggacgc attcgccaga
     8401 tacagctcag tcccatccgg ctgtttgacg ccctggctac caaatactgc gaaaatcgac
     8461 agtgatacca ccagcggagc aaccaactgc atgacgctga cgcccatgtt tcccagacca
     8521 ccattcagac ccagcgcgcc accctgcttc tgtttcggaa agaagaagct gatgtttgcc
     8581 atactggatg cgaagttcgc gccagcaaag ccgcatagca gagagatgat gatgaagacg
     8641 ctataaggcg tggaggtatc ctgcacggca aaacccagcc agacgcaagg aataatcaga
     8701 ataccggtgc tgaacgccgt ccagcgacga ccaccgaaga taggaaccat aaaggagtat
     8761 ggaacacgta ataacgcgcc agaaaccgaa ggcagcgcag tcaacataaa tagctgatcg
     8821 gtcgtaaaat taaaaccgac tttcggtaag ttcaccgcaa cagcgctgaa caacatccat
     8881 acgcaaaacg ccagcagcag acagggaacg gaaatccaca ggttacggct ggcaatacgt
     8941 tgaccgcgtt gttgccagaa cgcaggatct tccggtcgcc aatctgtaat gacagctcca
     9001 gtagcccttt cgggggcgga tgagtgactc atagacacct ctgatactcg tttcgatgtc
     9061 tgccacctta gtgtctgtag ctaaaggcaa tttgatgtaa atcaaacgat aagataactt
     9121 tatctatcat tgatatttat cattacccat agtgagtaca gtgatttcat aaaaattatg
     9181 agatttttca cggtgctgta aaatccctac ccttaccgat gtaaagcgac taaccacacg
     9241 gcaaataagg agtaactctt tccgggtatg ggtatacttc agccaatagc cgagaatact
     9301 gccattccag aatgtatcat cacattcatt aaggttattg ctcatttaaa gcctgaagga
     9361 agaggtttac atgcttaaac gttgtctctc tccgctcacc ctggttaatc aggttgcgct
     9421 tattgtgttg ctttctactg ctattggact ggcagggatg gcggtttctg gctggctggt
     9481 gcaaggcgtt cagggcagcg cccatgcgat caacaaagcg ggatcgctgc gcatgcaaag
     9541 ttaccgtctg ttggcggcag tgccattaag tgagaaagac aagcccttaa ttaaagagat
     9601 ggaacaaacg gcatttagcg ccgagttaac tcgagcagca gaacgagacg aacaactggc
     9661 gcaattacag ggtttacaag attactggcg taatgaactg atccctgcac tgatgcgtgc
     9721 acaaaaccgc gaaacggtgt cagcggatgt cagccagttt gttgccgggc ttgatcagct
     9781 ggtatctggt tttgaccgca ccacggaaat gcgcattgag acagtggtac tggtccatcg
     9841 ggtaatggcg gtatttatgg cacttttact ggtgttcact attatctggt tgcgggcgcg
     9901 actgctacaa ccgtggcggc aactgctggc aatggcgagt gccgtcagtc atcgcgattt
     9961 tacccaacgc gcgaacatca gcgggcgcaa cgaaatggcg atgcttggaa ctgcattgaa
    10021 caatatgtct gcagaactgg ccgaaagtta tgccgtactt gagcagcggg ttcaggagaa
    10081 aaccgccggg ctggagcata aaaatcagat cctctctttt ttatggcagg ctaaccgccg
    10141 tttgcattcc cgcgccccgc tgtgtgaacg cctgtcacct gtactcaacg gcttacagaa
    10201 tttaaccctg ctacgtgata tcgaactgcg ggtgtatgac actgatgatg aagagaatca
    10261 tcaggagttt acctgccagc cagatatgac ttgtgatgat aaaggctgcc agctctgccc
    10321 gcgcggcgta ttacccgttg gtgatcgcgg cacaaccctg aagtggcgac tggctgactc
    10381 tcatacgcag tacggtattt tgctggcgac cctgccgcag gggcgtcatc ttagccatga
    10441 tcaacaacaa ctggtggata ccctggttga acaactcacc gccacgctgg cgctggatcg
    10501 ccatcaggaa cgtcagcaac agttgatcgt gatggaagag cgtgccacca ttgcgcgcga
    10561 actgcatgat tctattgccc aatctctctc ttgcatgaag atgcaggtga gttgtttaca
    10621 gatgcagggc gatgcgctgc cagcaagcag ccgcgaactg ttaagtcaga tccgtaacga
    10681 actgaatgca tcctgggcgc agttgcgtga attgctcacc acattccgct tgcagctcac
    10741 cgagcctgga ttacgtccgg cgctggaggc gagttgcgaa gagtacagcg ccaaatttgg
    10801 cttcccggtg aagctggatt atcaattgcc gcctcgtctg gtgccttcac atcaggcaat
    10861 ccacttgttg caaattgccc gtgaggcatt aagtaacgcc ctcaaacatt cgcaagcgag
    10921 tgaggtcgtg gtgacggtgg cgcaaaacga taatcaggtc aaactgaccg tccaagataa
    10981 cggctgcggc gtgcctgaaa atgccatccg cagcaatcac tacggcatga taataatgcg
    11041 cgaccgtgcg caaagtttac gaggcgattg ccgcgtccgc cgtcgtgaat caggtggcac
    11101 cgaagtggtg gtcaccttta ttcccgaaaa aactttcaca gacgtccaag gagataccca
    11161 tgagtaatca ggaaccggct actatcctgc tgatcgacga tcacccgatg ctgcgaactg
    11221 gcgtaaaaca gcttatcagt atggcaccag atatcaccgt ggttggcgaa gcgagtaatg
    11281 gcgaacaggg tattgaactg gcggagtctc ttgatcccga tctgatcctg ttagatctca
    11341 atatgcccgg catgaacggt ctggaaacgc tggataaact gcgcgaaaag tccctctcag
    11401 ggcgcattgt ggtattcagc gtctctaacc atgaagaaga tgtggtcacc gcactgaaac
    11461 gcggcgcgga tggttatctg ttaaaagata tggaaccgga agatctgctg aaagcattgc
    11521 atcaggcagc tgctggcgaa atggtattaa gcgaagcatt aacgcctgtt ctggccgcca
    11581 gcttgcgcgc taaccgtacc actactgagc gcgatgttaa ccagttaacc ccacgcgagc
    11641 gcgatattct caagctgatt gcccagggtt tgccgaacaa gatgattgcc cgccgcctgg
    11701 atatcaccga aagcacagta aaagtgcacg tcaagcacat gctgaagaaa atgaaactca
    11761 agtctcgcgt ggaagcagcg gtatgggtgc atcaggagcg cattttctga ttacggttcc
    11821 cagcgcagtt cgtcgtttga caatgcatcg aacggttcga caagcgttag cgtgatctca
    11881 ttggaggaga cacgctgccc ctggttatct tccaccacca ccgacaatcg ccagtgattg
    11941 cttgcccctt ccccgttctg ccagtcaggc atgatcagcg tccagccctc cgcgctgttg
    12001 gcttgtgcgc ccggcgtcaa acttaatatc tgcgtatcgc cctgccaaat cagttgccga
    12061 ataccgtaac gactgcggat ttgtaatttc agcggcactg tttcgccagg ttttagatcc
    12121 cacggcggtg tcgccagaaa caccgttaac gtttttcgct gtcggtactc aagagtcggt
    12181 agattatttc gctgcggatt gtcatagcga ctaccacgta acgactgact ttcggcaacc
    12241 tcgcccgcag aaagttgttt tttgagcggt acaccaaagc ggtaattaag attcagcccg
    12301 aggttatttt gattctcgcc actttcaccc tgtttatgct gggccgtcac agtgactaat
    12361 ggcacagggg tgtaatttaa tcccagactc aacgcgacgg gattgtgata acccgtacca
    12421 gagttaaaca aatcaacacg atcaccaaaa tactgttcta ggctgacact ggtattgagg
    12481 tgttgataga acggcatgcg catccgagct gtcaggtcgt acccgcgcgc catccgttgt
    12541 tcctgcgtgg ctgtctgttc atgccatgca gcaaacggct gataaaagtt tgccaataat
    12601 cgcaaatatt cgccccacgc ttcggcacca aagcccgctc gctgaagatt ttcgtccagc
    12661 aagttgtcat aaaaagtgtt ataacccacc agccagttgc cgcgcgccca gcgttgccca
    12721 acgcccacat tgctcaccaa cccattatcc tgctgagtaa gaccaagctg gctccaggtg
    12781 agataacgat cattatcttg taacggcaca aaccagcttc cacgactgcc ggtgaaatgt
    12841 ccttcgttat ccactttgac gtcaacactg gcatttcccc acggtgatag ccaggactct
    12901 acgtgctgat taacctgttg actaagcgcg tcgcggactt ttcccaatgc gaaagctttt
    12961 gcctgctcgc cagtatccag cccgttatca ttcatactgg tttcgccgaa atctttcaca
    13021 atttcagcaa agtgtttttc cccatcatga ttttcgggag ccatgcctaa atccggcaga
    13081 ccatcattgt tattatcaaa gggatttgcc gctttttgct cgaaggtaga ttgtgcgtta
    13141 gctgtaccgc ctgctacaag caagagtaaa taaaacggga taatgcgagg aacgaaacgg
    13201 ctcaaaacgt cggtaacttc cggtaataat gaaaaccata gccttaaaga ataacgatta
    13261 ctggcaactt ttgtcgtatt ttctcgcgct ttcaggaaaa tccttaaaaa tgtgaccgat
    13321 tggtcagacg ctgctgaagc agtaagatag aagatgagtg tctaattccc tgaatacagg
    13381 agtaaataat gcaaaaaatc gtgatcgttg ccaatggcgc accttacggg agcgaatcct
    13441 tgtttaacag cttgcggctg gccattgcgt tacgagagca ggagagcaat ctggatctgc
    13501 gtctgttcct catgtctgat gcggtcacag ccgggttgcg cgggcaaaaa ccaggggaag
    13561 gctacaacat tcagcaaatg ctggagatcc ttaccgctca gaatgtaccg gtgaaattgt
    13621 gcaaaacctg taccgacggg cgcgggatta gtacacttcc tctgattgat ggggtggaaa
    13681 tcggtactct tgtggaactg gcgcaatgga cgctgtcagc cgataaagtg ctcacatttt
    13741 aatgtttgag ggggcgtctg acgccccact atgcgggaag tttactcagg cgaatcccgg
    13801 ccgtaacaca ccatccggat aattctccgc cagcagtttt tttaccgata ccagcaaatc
    13861 attcagccca tcgtcctgca ttcccagttt gataagctcc tgttccagtg aaaacaggta
    13921 ttgtgcgttg gttcccagcg gaccgctcgc cgccgcaatc aacggcgcga tgacctgagc
    13981 gcgagtgtca gattcatatt ctggatgtcg cgggtccata ataaacacaa tggcgtttac
    14041 tgtgcatcca tcatcaagat caagctgaca ccaggttggc agataacagc cggtaatcat
    14101 ctcgcgcttc cacaacaggg ttagttcctg ctccagcgtc tcttctggca gtcgataggc
    14161 gacgcctgta gtgcgtccgc cctctttcag tgcaagcatc cgtcccggct ggtgcgcagt
    14221 cccgcgcccg gcggtcaggc gcaggcaaaa cgcgcgatgc catccaacca gtgtaccggt
    14281 gcacgactcg gtaaactcca gtgccggatt ccacatcaac gatccataac cgaagatcca
    14341 caccggtccc tcatcaggtc gacaagccag cgtcgccgcc agcgaagccg ctcgttgctc
    14401 tgctgaccat aagagtgatt cttcaatggc accaaatgcc gttttacaat cggcattcat
    14461 caagaaatca cgcgttatca ccttacacct ccgccactgc atacttccct gcgacaactt
    14521 tttggtgtct tccggacatt tttactgctc attttgaaac cactaacggg acaatatgca
    14581 atccacggac cacttgcaag gcaacaccgc acgaatagct ttaactaagc taccggtttt
    14641 acgatttttt atgccattta tcatcatccc ctttggcata ttcatgcttc acagcagccc
    14701 aggccacttt atgcgcggtt tcttcgcggc tggcgtcatc acgccgatcg tctttatctt
    14761 tatattgatc ccatgcgctg ttgaacgctt ctttatagat atcctgggca tgagacggta
    14821 gaacgtgctt tacgctttcc ggcagatcgc ttttcgtttt atacggcatc gttgactcct
    14881 tttacaaagt tgaacattaa gtgtggtcaa caatatctac tcttgccaaa acataagaat
    14941 tttcatgtca gactgttctt aagaaacgct aaaacaaaca ttgtctaaac gtaatactta
    15001 tttttatgtc ccaatgagta aaaaatcgat agcggggtaa aaattcgtaa aatgttaccg
    15061 atatccagac actttctgtt atttttccta cctatttttt acattttcga taaattcatc
    15121 tgcaaaggga taaccataat gtcaaatgct caagaggcgg taaaaacccg ccacaaggag
    15181 acttcgctta ttttcccggt tctggcgctg gtagtgctgt tcctgtgggg aagcagccag
    15241 acactaccag tggtcattgc catcaatctt cttgcgctta ttggtatttt aagtagcgcc
    15301 tttagtgttg tccgtcatgc ggacgtatta gcccatcgcc tgggagaacc ttacggttcg
    15361 cttattctta gcctttcagt ggttattctt gaagtcagtt tgatttcagc tttaatggca
    15421 accggcgacg ccgcgccaac gctaatgcgt gatacgctct attcaatcat tatgattgtt
    15481 accggtgggc tggttggctt ttcattattg ttgggcggtc gtaagtttgc cacccaatat
    15541 atgaatctgt ttggtatcaa gcagtattta attgcgctgt tccccctggc gataatcgta
    15601 ctggtatttc caatggctct gcctgcggcg aatttttcaa ccggtcaggc gttactggta
    15661 gcattaattt ctgcggcaat gtatggcgta tttttgctga tccagaccaa aacgcatcaa
    15721 agtttgtttg tctacgagca cgaagatgac agtgatgacg acgacccgca tcacggtaaa
    15781 ccgtctgccc atagcagcgt gtggcatgct atctggttga ttatccatct gattgccgtt
    15841 attgcagtca ccaaaatgaa tgccagcccg ctggagacat tgctcgacag catgaatgcc
    15901 cctgtcgcct ttactggctt cctggtggct ctgttgattc tgtcgccgga aggtttaggt
    15961 gcgttaaaag cagtgttgaa caaccaggtc cagcgcgcga tgaatctgtt ctttggttca
    16021 gtgttagcaa ccatttcgct taccgtacct gtcgtcacgc taattgcctt tatgacgggt
    16081 aacgaattac agtttgcact tggtgcgcca gaaatggtgg tgatggtggc ctctttagtg
    16141 ctgtgccata tctccttctc caccggacgt actaacgtgc tcaatggcgc agcgcatctg
    16201 gcactgtttg ccgcctattt gatgacgata tttgcctgac agttatatct cctccgatga
    16261 cggaaatcgg gggagataag ataaattcct gcttattgta tttcttcata ctacctagac
    16321 agctcgttaa tcagaattgc gagcctgtac cacaacctgc acgaaaccac tgcaacagct
    16381 gttgaaaagc cggaatgtac tctttattgc aaacatttca gggatgaagt gaagatgaat
    16441 tgagacgtag tatcc
//
LOCUS       DADMHM010000076        16355 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.077, whole genome shotgun sequence.
ACCESSION   DADMHM010000076 DADMHM010000000
VERSION     DADMHM010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16355)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16355)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16355
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.077"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(1..322)
                     /locus_tag="JN125_002170"
                     /pseudo
     CDS             complement(1..322)
                     /locus_tag="JN125_002170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707590.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(267..646)
                     /locus_tag="JN125_002171"
                     /pseudo
     CDS             complement(267..646)
                     /locus_tag="JN125_002171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001014786.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YdiL family protein"
     gene            complement(782..889)
                     /gene="rprA"
                     /locus_tag="JN125_002172"
     ncRNA           complement(782..889)
                     /ncRNA_class="antisense_RNA"
                     /gene="rprA"
                     /locus_tag="JN125_002172"
                     /product="antisense sRNA RprA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00034"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00034"
     gene            complement(1075..2187)
                     /gene="ydiK"
                     /locus_tag="JN125_002173"
     CDS             complement(1075..2187)
                     /gene="ydiK"
                     /locus_tag="JN125_002173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter YdiK"
                     /protein_id="HAY8871949.1"
                     /translation="MVNVRQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTV
                     VIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISS
                     GDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHI
                     GRFMVHCALMLLFSALLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGV
                     VVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTT
                     WGTVLLVWSGVVGTLDNVIRPMLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLL
                     AVSWRLFAAWVEEVPPPTDQPEEILEELGEIEKPNK"
     gene            2576..5632
                     /locus_tag="JN125_002174"
     CDS             2576..5632
                     /locus_tag="JN125_002174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HAY8871950.1"
                     /translation="MIPQISQAPGVVQLVLNFLQELEQQGFTGDTATSYADRLTMSTD
                     NSIYQLLPDAVVFPRSTADVALIARLAAQERYSSLIFTPRGGGTGTNGQALNQGIIVD
                     MSRHMNRIIEINPEEGWVRVEAGVIKDQLNQYLKPFGYFFAPELSTSNRATLGGMINT
                     DASGQGSLVYGKTSDHVLGVRAVLLGGDILDTQPLPVELAETLGKSNTTIGRIYNTVY
                     QRCRQQRQLIIDNFPKLNRFLTGYDLRHVFNDEMTEFDLTRILTGSEGTLAFITEARL
                     DITRLPKVRRLVNVKYDSFDSALRNAPFMVEARALSVETVDSKVLNLAREDIVWHSVS
                     ELITDVPDQEMLGLNIVEFAGDDEALIDERVNALCARLDELIASHQAGVIGWQVCREL
                     AGVERIYAMRKKAVGLLGNAKGAAKPIPFAEDTCVPPEHLADYIAEFRALLDSHGLSY
                     GMFGHVDAGVLHVRPALDMCDPQQEILMKQISDDVVALTAKYGGLLWGEHGKGFRAEY
                     SPAFFGEELFAELRKVKAAFDPHNRLNPGKICPPEGLDAPMMKVDAVKRGTFDRQIPI
                     AVRQQWRGAMECNGNGLCFNFDARSPMCPSMKITQNRIHSPKGRATLVREWLRLLADR
                     GVDPLKLEQELPESGVSVRTLIARTRNSWHANKGEYDFSHEVKEAMSGCLACKACSTL
                     CPIKIDVPEFRSRFLQLYHTRYLRPLRDHLVATVESYAPLMARAPKTFNFFINQPLVR
                     KLSEKHIGMVDLPLLSVPSLQQQMVGHRSANMTLEQLESLNAEQKARTVLVVQDPFTS
                     YYDAQVVADFVRLVEKLGFQPVLLPFSPNGKAQHIKGFLNRFAKTAKKTADFLNRMAK
                     LGMPMVGVDPALVLCYRDEYKLALGEERGEFNVLLANEWLASALESQPVATVSGESWY
                     FFGHCTEVTALPGAPAQWAAIFARFGAKLENVSVGCCGMAGTYGHEAKNHENSLGIYE
                     LSWHQAMQRLPRNRCLATGYSCRSQVKRVEGTGVRHPVQALLEIIK"
     gene            5629..6039
                     /gene="menI"
                     /locus_tag="JN125_002175"
     CDS             5629..6039
                     /gene="menI"
                     /locus_tag="JN125_002175"
                     /EC_number="3.1.2.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA hydrolase"
                     /protein_id="HAY8871951.1"
                     /translation="MIWKRKITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDS
                     RTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGRVRGIC
                     KPLHLGSRHQVWQIEIFDEKGRLCCSSRLTTAIL"
     gene            6139..6327
                     /locus_tag="JN125_002176"
     CDS             6139..6327
                     /locus_tag="JN125_002176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416200.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871952.1"
                     /translation="MSTQLDPTQLAIEFLRRDQSNLSPAQYLKRLKQLELEFADLLTL
                     SSAELKEEIYFAWRLGVH"
     gene            6874..7242
                     /gene="sufA"
                     /locus_tag="JN125_002177"
     CDS             6874..7242
                     /gene="sufA"
                     /locus_tag="JN125_002177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly scaffold SufA"
                     /protein_id="HAY8871953.1"
                     /translation="MDMHSGTFNPQDFTWQGLTLTPAAAIHIRELVAKQPGMVGVRLG
                     VKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDFVREGLNQI
                     FKFHNPKAQNECGCGESFGV"
     gene            7251..8738
                     /gene="sufB"
                     /locus_tag="JN125_002178"
                     /pseudo
     CDS             7251..8738
                     /gene="sufB"
                     /locus_tag="JN125_002178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416198.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
     gene            8748..9494
                     /gene="sufC"
                     /locus_tag="JN125_002179"
     CDS             8748..9494
                     /gene="sufC"
                     /locus_tag="JN125_002179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008500629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HAY8871954.1"
                     /translation="MLSIKDLHVSVEDKAILRGLSLAVRPGEVHAIMGPNGSGKSTLS
                     ATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTA
                     LNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA
                     VLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHV
                     LYQGRIVKSGDFTLVKQLEEQGYGWLTEQQ"
     gene            9469..10740
                     /gene="sufD"
                     /locus_tag="JN125_002180"
     CDS             9469..10740
                     /gene="sufD"
                     /locus_tag="JN125_002180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HAY8871955.1"
                     /translation="MAGLPNSSNALQQWHHLFEAEGTKRSPQAQQHLQQLLRTGLPTR
                     KHENWKYTPLEGLTNSQFVSIAGEISPQQRDALALTLDAVRLVFVDGRYVPALSDAIE
                     GSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMYITQG
                     VAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKL
                     AFENPLSHHFAHNDLLLAEDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMP
                     VKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNN
                     LLMGKLAEVDTKPLLEIYADDVKCSHGATVGRIDDEQMFYLRSRGINQQDAQQMIIYA
                     FAAELTEALRDEGLKQQVLARIGQRLPGGAR"
     gene            10737..11957
                     /gene="sufS"
                     /locus_tag="JN125_002181"
     CDS             10737..11957
                     /gene="sufS"
                     /locus_tag="JN125_002181"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase SufS"
                     /protein_id="HAY8871956.1"
                     /translation="MTFSVDKVRADFPVLSREVNGLPLAYLDSAASAQKPSQVIDAEA
                     EFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVA
                     NSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLHTL
                     FDEKTRLLAITHVSNVLGTENPLAGMITLAHQHGAKVLVDGAQAVMHHPVDVQALDCD
                     FYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEA
                     GTPNTGGIIGLGAALEYVSVLGLNNIAEYELNLMHYALSQLESVPNLTLYGPQNRLGV
                     IAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVD
                     RLVTGLQRIHRLLG"
     gene            11970..12386
                     /gene="sufE"
                     /locus_tag="JN125_002182"
     CDS             11970..12386
                     /gene="sufE"
                     /locus_tag="JN125_002182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfuration protein SufE"
                     /protein_id="HAY8871957.1"
                     /translation="MALLPDKEKLLRNFLRCANWEEKYLYIIELGQRLPELRDEDRSP
                     QNSIQGCQNQVWIVMRQNAQGIIELQGDSDAAIVKGLIAVVFILYDQMTPQDIVNFDV
                     RPWFEKMALTQHLTPSRSQGLEAMIRAIRAKAAALS"
     gene            12535..13538
                     /gene="ldtE"
                     /locus_tag="JN125_002183"
                     /pseudo
     CDS             12535..13538
                     /gene="ldtE"
                     /locus_tag="JN125_002183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707577.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase LdtE"
     gene            complement(13602..13838)
                     /locus_tag="JN125_002184"
     CDS             complement(13602..13838)
                     /locus_tag="JN125_002184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006675846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major outer membrane lipoprotein"
                     /protein_id="HAY8871958.1"
                     /translation="MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQL
                     SNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK"
     gene            complement(14149..15561)
                     /locus_tag="JN125_002185"
     CDS             complement(14149..15561)
                     /locus_tag="JN125_002185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010346010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase I"
                     /protein_id="HAY8871959.1"
                     /translation="MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHG
                     QRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGN
                     SEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNL
                     PGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHII
                     SKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVIT
                     ATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICER
                     TDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFP
                     DATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVV
                     MVSGALVPSGTTNTASVHVL"
     gene            16118..16327
                     /gene="fumD"
                     /locus_tag="JN125_002186"
     CDS             16118..16327
                     /gene="fumD"
                     /locus_tag="JN125_002186"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate hydratase FumD"
                     /protein_id="HAY8871960.1"
                     /translation="MGNRTKEDELYREMCRVVGKVVLEIRDLGQEPKHIVIAGVLRTA
                     LANKRIQRSELDKQAMETVINALVK"
BASE COUNT         4170 a         3933 c         4303 g         3949 t
ORIGIN      
        1 gtgcagagtt aaatacatta gcccagatgg gccggaccat ttttttcagt agtgcggcaa
       61 aaataaagac acagaccaac gagcccatac tgtaataaga gatggttttt aatgcctcag
      121 cttctgacat accagcaaaa gccatcgcat atttgggcat ccacaccaca atcacataaa
      181 aggtcgagaa tgcggctaca ccgaacagta ccgatgaaac accttccagc cagactaacg
      241 gtttgctgtt catttgcggt aattcattag ctacgctggc gtccaccaac tggctgggga
      301 atttgctttt caacagcatt accttcagcg gctaccgatt gatagatctt ccagtcaata
      361 aaattgccat cagggtagac tcgttgaaat gcggttaagt cggggaaaaa acgcatggtg
      421 ttgttgccga tgcggttatt tattttctct atgatggcat gaagatgttt ttttctttgc
      481 tgacgcatag ccaacagttg ctcgactaca cgatcaggaa tggcacactt gccattttcc
      541 cactgacgcc agctttcact gtcaccggtc tgggcaatcc aggtgcgcat tcatcaatag
      601 tcatggcaaa aatatggcgg agtgcctgga gttcataagc gttcatcgtg taatggctgc
      661 atgaaataaa caataaaata taaataacat tatcagcctg ctgacggctt gaagagagtc
      721 acagtatctt gtgcaacatt attggaaaga gtgaggggcg aggtagcgaa gtggaaaaat
      781 gttaaaaaaa agcccatcgt gggagatggg caaagactac acacagcaat tcgttgtttc
      841 actcagggga tttccatgct tataaatcaa tatgttgatt tataaccgtg agctaatagt
      901 aggcatacgg actttttgcg tcgatcagat tcgtctcatt agtttaaaaa ctgtaaagaa
      961 tttgcgacag gtactaccag ctgaatggcg gtaagcagga aaatatgggg aagagcaagc
     1021 aaatatcaat tagcgggggt taacaatcag gcggcagagc cgcctgatga gaaattactt
     1081 attcggtttc tcgatttcgc caagttcttc gagaatttct tccggttggt ccgtcggcgg
     1141 cgggacttct tccacccacg cggcaaacag acgccaggaa acggctaaca gaaccggacc
     1201 aataaacaga ccgatcatcc cgaaagcaat caaaccacca ataacaccag agaggatcag
     1261 gatcagcggt aaatcggcac ccatgcgaat taacattggg cggatgacgt tatccagcgt
     1321 gccaaccaca ccgctccaca ctaacaatac cgttccccag gtggtatcgc cagtccagta
     1381 gagccagata atcgccggaa tcagtaccgg caacgggcca agctggacaa ggcaggagag
     1441 gatcattaac accgttagca acgttgcata aggtacgccg gatacggcga ggccgatacc
     1501 gccaagcact gcctgtacta acgccgtcac caccacaccc agcgccaccg cgcggatagc
     1561 ctgtgccgcc agcagtacgg cggcatctcc gcgaacgcct gccagacggg ttgcaaaatg
     1621 gcgaatgcct tgtgccacct gttcaccgcg ccagtacagc agggcactga agagaagcat
     1681 cagcgcacaa tgcaccataa agcgcccgat atgcgccgcc tgcccaacga accaggtggt
     1741 ggtggtgcca atataagggc ggactttcgc catgatcgcc gtccccccca tatccagcaa
     1801 gttgtgccag cctgcataca gcttcgcgcc aatcaccgga atggtattaa gccacgccag
     1861 atcgggtaac gtcatgtcgc cgctggaaat ggctttaatt agcgggccgc tgccgtcgac
     1921 gatactgtta accagcaaag caatagggat gataaacacc atcactaata acagcgtcat
     1981 caccagaacg gcgagagagc ggcggccaaa catgatcttt tgcaaacgta acaataccgg
     2041 ccaggtggcg ataaccaccg taccggccca tgcaaagccg agaataaagg gttgaacaat
     2101 ccacagacat gccacaatca tgatggctaa aaacagcacc gaaagcagaa tttgtgcgac
     2161 atccctgggc tgacgaacat ttaccataac tacttttcac cttttttgtg cgtcaaatcg
     2221 tcgacgcgac gtgaacacgc gaaactcacc tgcataatga tgagcaattt cagcggtttt
     2281 taacaggccg attctgccct taattctgat gggcgtgtta gaaaaaaatg tggtacaaca
     2341 actcaggcaa cacgcaaacg atttactcgt cgtatttcaa gttgcatgtg ctgcggctac
     2401 gttcgttcac cccagtcact tactattgta agctcctgga gttcactcgc ttgccgcctt
     2461 cctgcaactc gaaatccata gagtaaataa acatctcctt tcagtgcgct attgcagccg
     2521 cctgaaagaa tagtgtatcg acctacatca cagaccgcag gaaaggggca atataatgat
     2581 tccacagatt tcccaggcac ccggcgtcgt tcaactggtg cttaattttt tgcaagagct
     2641 ggagcaacaa ggttttaccg gcgatacggc gacaagttat gccgatcgtc tgacaatgtc
     2701 gaccgacaac agtatttacc aacttctccc cgatgcggtg gtatttccgc gttcaaccgc
     2761 agatgtggcg ctgatcgccc gtcttgccgc gcaggaacgc tattcatcgc tgatctttac
     2821 cccccgcggc ggcggcaccg gcactaacgg tcaggcgctc aaccagggga ttattgttga
     2881 tatgtcccgc catatgaacc gcatcatcga aattaaccct gaagagggct gggtgcgcgt
     2941 tgaggccggg gtgataaaag atcaactcaa tcagtacctg aaaccgttcg gctacttttt
     3001 tgcgccggaa ctttcgacca gcaaccgggc aacgctcggt gggatgatca ataccgatgc
     3061 atccggtcag ggatcgctgg tctatggcaa aacgtcagat cacgtacttg gcgtacgcgc
     3121 ggtgttgttg gggggcgata ttctcgatac gcaaccttta cccgtcgaat tggcggaaac
     3181 gctgggtaaa tccaatacca caatcgggcg aatttataac acggtttatc aacgttgccg
     3241 tcagcaacgc cagttaatta tcgacaactt ccccaaactt aaccgctttc ttaccggtta
     3301 cgatctgcgt catgtcttta acgatgagat gaccgagttc gacctgacgc gcattctgac
     3361 gggttcagaa gggacgctgg cctttattac cgaagcgcgg ctggatatta cgcgcttgcc
     3421 taaagtgcgc cgtctggtga acgtcaaata tgactctttt gactctgcgc tgcgtaacgc
     3481 gccgtttatg gttgaggcgc gggcgctttc ggtagagacg gtggactcaa aagtgctgaa
     3541 tctggcgcgg gaagatattg tctggcattc cgtcagcgag ttgattaccg atgtgcctga
     3601 ccaagagatg ctcgggctga acattgtgga atttgctggt gatgatgagg cgctgattga
     3661 tgagcgggta aatgcactct gtgcgcggtt ggatgagctg atcgccagtc atcaagcagg
     3721 tgtcatcggc tggcaggtgt gccgtgagct ggcgggggtt gaacgtatct atgcaatgcg
     3781 caaaaaagcc gttggtctgc ttggcaatgc caaaggtgcc gctaagccaa ttccgtttgc
     3841 tgaggatacc tgcgtaccac cggaacacct ggcggattat attgctgaat ttcgcgcgct
     3901 gctcgacagc cacggcttaa gctacggtat gttcggtcac gtcgacgcag gtgtcttgca
     3961 cgtccgtcca gcgctggata tgtgcgatcc tcaacaagag attttgatga agcaaatctc
     4021 tgatgacgtg gtggcgctga ctgcgaaata cggtggtttg ttgtggggcg agcacggcaa
     4081 aggttttcgc gctgaataca gcccggcgtt tttcggtgag gaactttttg cagaactgcg
     4141 caaagtgaaa gcggcatttg acccgcataa ccgactcaac ccagggaaga tttgcccgcc
     4201 agaaggtctc gatgcgccga tgatgaaagt ggacgcggtg aagcgcggta cattcgatcg
     4261 gcagatcccc attgcggtac gccagcagtg gcgcggtgcg atggagtgta acggcaacgg
     4321 tttatgcttc aactttgatg cccgtagtcc gatgtgtccg tcgatgaaga tcacccagaa
     4381 ccggattcat tcaccgaaag ggcgcgcaac gctggtgcgt gaatggctgc gtttgttggc
     4441 ggatcgcggc gttgatccac tcaaactgga acaagaactg cctgaatccg gcgtcagtgt
     4501 gcggacgtta attgcccgca cgcgcaatag ctggcatgcg aataaaggcg aatatgactt
     4561 ctcacacgaa gtcaaagagg cgatgtcggg ctgtctggcc tgtaaagcgt gttcgaccct
     4621 gtgccccatc aaaattgatg tgccggagtt tcgctctcgt tttctgcagc tctatcacac
     4681 ccgttattta cgcccgctgc gcgaccacct cgtcgctacg gtcgagagct acgcgccgct
     4741 gatggcacgc gcgccgaaaa cctttaactt cttcattaac cagccgctgg tgcgcaaact
     4801 ctcggaaaaa catatcggca tggttgattt gccgctgctg tcggtcccct cgctacaaca
     4861 acaaatggtg gggcatcgct cggcaaacat gacgctggaa cagcttgaat ctctcaatgc
     4921 agagcagaaa gcgcgcacag tgttggtggt gcaggacccc tttaccagct attacgatgc
     4981 gcaagtggtg gcggattttg tccgtctggt cgaaaaatta ggtttccagc ctgtgttact
     5041 gccattttcg ccaaatggca aagcccagca tattaaaggt tttcttaatc gttttgcgaa
     5101 gacggcgaaa aagacggcgg atttcctcaa ccgtatggcg aagctgggta tgccaatggt
     5161 gggcgtcgat ccggcgctgg tactttgtta tcgcgatgaa tataaactgg cgctgggcga
     5221 ggagcgtggc gagtttaacg tcttactggc gaatgaatgg ctggcaagcg cacttgagtc
     5281 acagccagtg gctacagtca gcggtgaatc atggtatttc tttggtcact gtaccgaagt
     5341 taccgccttg ccgggtgcgc cagcacaatg ggccgcgata tttgcccgtt ttggcgcgaa
     5401 actggaaaat gtcagcgtgg gttgctgcgg catggcaggg acttacggac atgaagcgaa
     5461 aaaccatgaa aattcgctcg ggatctatga gttatcctgg catcaggcta tgcagcgact
     5521 gccgcgtaac cgctgtctgg cgaccggata ttcctgccgt agccaggtaa aacgggttga
     5581 aggcacgggg gtacgccatc ctgtgcaggc tttactggag attattaaat gatatggaaa
     5641 cggaaaatca ccctggaagc actgaatgct atgggtgaag gaaacatggt ggggttcctg
     5701 gatattcgct ttgaacatat tggtgatgac acccttgaag cgacaatgcc agtagactcg
     5761 cggacaaagc agcctttcgg gttgctgcat ggaggagcat ccgtggtact ggccgaaagt
     5821 atcggttccg ttgccggtta tttatgtacc gaaggtgagc aaaaagtggt tggtctggaa
     5881 atcaatgcta atcacgtccg ctcggcacga gaagggcggg tgcgcggcat atgtaaaccg
     5941 ttgcatctcg gttcgcgtca ccaggtctgg cagattgaaa tcttcgatga gaaagggcgt
     6001 ttgtgctgtt cgtcacgatt gacgaccgcc attttgtgac gttgtcacca gaaaagtgtg
     6061 acgcatattg cttttggtca ttatctgcac agtaaacggt ggtatactgt acacgtcttg
     6121 tctaaaagcg aggatgctat gtctactcaa cttgatccca cccagctggc cattgaattt
     6181 ttacgccgtg accagagcaa tctttcacct gcccaatatc tcaaacgtct gaaacaacta
     6241 gaacttgaat ttgctgacct gcttactctc tcttctgctg aattaaaaga agaaatctac
     6301 tttgcctggc gtctgggcgt gcattgatcc tgacttaatg ccgcaagttc gccaaatcga
     6361 cctggattaa cctccgtcca ggttcgatga ccttcttaat actgcttatc taccgcctga
     6421 tattgttcaa aaataatact aatcgcagtt tgtgttaaaa cggcgggtta gctttatgag
     6481 attattctta tcgccccttc aagagctaag ccactgagag tgccggagat aagcgccgga
     6541 tggggtagaa acccttaagc ctgtgtcgca cagacttaag ggttttctta tttctgaacg
     6601 ctgcactttt ttacctatct cttaaatagt cattttaata caactttttc tttttcatca
     6661 cagccttaat ggtccttaga taataaccat tatctaacaa tgagatacct aattcttagc
     6721 gtgcctgtta acccacacat cagggtctat gcttattaaa agcaggcaaa aagcatgttt
     6781 tacggtaaag cccctgcgtt tgctgagttg aactgataat cattatcact aacatgctgt
     6841 tatacgctga aagcgatgaa gtgaggtaaa tcgatggaca tgcattcagg aacctttaac
     6901 ccacaagatt tcacctggca aggcttaacg ctgacacccg cagcggcgat acacatccgt
     6961 gagctggtgg caaagcagcc gggtatggtc ggcgtgcgct taggcgtgaa gcaaacgggc
     7021 tgcgcgggct ttggctatgt gctcgacagt gttagcgagc cggacaaaga cgatctgctg
     7081 tttgaacacg acggcgcgaa gctgtttgtc ccgctgcaag cgatgccgtt tattgatggc
     7141 acggaagtcg atttcgttcg tgaaggactt aatcagatat tcaaatttca caaccctaaa
     7201 gcccagaatg aatgtggctg tggcgaaagc tttggggtat aggcggtact atgtctcgta
     7261 atactgaagc aactgacgat gtcaaaacct ggaccggcgg cccgctgaat tataaagaag
     7321 gattcttcac ccagttagcc accgatgagc tggcaaaggg gataaacgaa gaggtggtgc
     7381 gcgcaatttc ggcgaagcgt aatgagccgg agtggatgct ggagtttcgt ctaaacgcct
     7441 atcgcgcata gctggagatg gaagaaccgc actggttgaa agcgcactac gacaagctga
     7501 attatcagga ttacagctac tactcagcac catcgtgcgg taattgtgac gacacttgcg
     7561 cgtctgaacc tggcgcggtg cagcaaactg gcgcgaacgc ctttttaagt aaagaggtgg
     7621 aggcggcgtt tgagcagttg ggcgttcccg tgcgggaagg caaagaggtg gcggtggatg
     7681 ccattttcga ctctgtttcg gttgccacta cttatcgcga aaaactggcg gagcagggaa
     7741 ttattttctg ttcctttggt gaggcgatcc acgatcaccc ggaactggtg cgtaaatatc
     7801 tcggcaccgt ggtgccgggg aatgacaact tctttgccgc gcttaatgcg gcggtagcct
     7861 ctgacggtac gtttatttat gtgcctaaag gcgtgcgctg cccgatggaa ctttccacct
     7921 attttcgcat taacgcggaa aaaaccgggc agtttgagcg caccattctg gtggccgacg
     7981 aaggcagcta cgtcagctac attgaaggct gttccgctcc ggtgcgtgac agctatcagt
     8041 tacacgcggc agtggtggaa gtcatcatcc ataaaaacgc cgaggtgaaa tattccacgg
     8101 tacaaaactg gttccctggc gataacaaca ccggcggtat tctcaacttc gtcaccaagc
     8161 gtgctttgtg cgaaggcgaa aacagcaaaa tgtcatggac gcaatcagaa accgggtccg
     8221 cgattacgtg gaaatatccc agctgcattt tgcgcggcga taactccatt ggtgagtttt
     8281 actcagtggc gctgaccagc ggtcatcagc aagcggatac cggcaccaag atgatccaca
     8341 tcggtaaaaa caccaaatcg accattatct cgaaagggat ctctgccgga catagtcaga
     8401 acagttatcg cggcttagtg aaaatcatgc cgacggcaac caatgcgcgc aatttcactc
     8461 agtgcgactc aatgctgatt ggcgctaatt gtggggcgca taccttcccg tatgtcgaat
     8521 gtcgcaataa cagcgcacaa ctggagcacg aggcaacgac atcacgtatt ggtgaagatc
     8581 aactgtttta ctgcctgcaa cgcgggatca gcgaagaaga cgccatctcg atgattgtta
     8641 acggtttctg caaagacgtg ttctcagaac tgccgctgga atttgccgtt gaagcacaaa
     8701 aactcctcgc catcagtctt gaacacagcg tcggataagg aataaacatg ttaagtatta
     8761 aagatttaca cgtcagcgtg gaagataaag ctatcctgcg tggattaagc ctcgccgttc
     8821 gtcccggcga agttcacgcc attatggggc caaacggttc gggcaaaagt accttatcgg
     8881 caacgcttgc cgggcgcgaa gattatgaag tgacgggcgg cacggttgag ttcaaaggca
     8941 aagatttgct tgcactgtcg ccggaagatc gtgcaggcga aggcatcttt atggccttcc
     9001 agtatccggt ggagattcca ggcgtcagta accagttttt cctgcaaacg gcacttaatg
     9061 cagtgcgcag ctatcgcggc caggaaacgc tcgaccgctt tgattttcag gatttgatgg
     9121 aagagaaaat cgctctcctg aagatgccgg aagatttatt aacccgttcg gtaaacgttg
     9181 gtttttccgg cggcgagaaa aagcgcaacg atattttgca aatggcggtg ctggaaccgg
     9241 agttatgcat tcttgatgag tcggactccg ggctggatat tgacgcatta aaagtggtcg
     9301 ccgatggcgt gaactccctg cgtgatggca agcgctcatt catcattgtt acgcactacc
     9361 aacgcattct cgactacatc aagcctgatt acgtccatgt gctatatcag ggacgaattg
     9421 tgaaatccgg cgatttcacg ttggtcaaac aactggagga gcagggttat ggctggctta
     9481 ccgaacagca gtaacgcgct gcaacagtgg catcacttgt ttgaagctga agggacaaaa
     9541 cgctccccgc aagcacagca gcatttacaa caattgctgc gtaccggact gccgacacgt
     9601 aaacatgaaa actggaaata tacgccgctg gaagggctga ccaatagcca gtttgtcagc
     9661 attgcggggg agatatcccc acagcagcgt gatgccttag cgttaacgtt agacgccgtg
     9721 cggctggtgt ttgtcgatgg acgttacgtg cccgcgctga gcgatgcaat tgaaggcagc
     9781 ggatatgaag tgagcattaa cgacgaccgt caggggttac ccgacgctat tcaggcggaa
     9841 gtgtttctgc atttgacgga aagcctggca caaagcgtga cgcatatcgc cgtgaagcgc
     9901 ggtcaacggc cggcaaagcc attgctgtta atgtatatca cccagggcgt ggcaggtgaa
     9961 gaggtgaaca ctgcccatta ccggcatcat ctggatctgg cggaaggtgc cgaagcaacg
    10021 gtgatcgaac attttgtcag ccttaatgat gctcgtcatt ttaccggggc acggttcact
    10081 atcaatgtcg cagcgaacgc ccacttgcag catatcaagc tggcgtttga aaacccgctc
    10141 agtcaccact ttgctcataa cgatttgttg ctggctgagg atgccaccgc atttagccat
    10201 agtttcctgc tgggtggcgc agtgttacga cacaacacca gtacgcaact caatggcgaa
    10261 aacagcacgc tgcggatcaa tagcctggcg atgccggtga aaaacgaggt gtgtgatacc
    10321 cgtacctggc tggaacacaa taaaggtttt tgtaacagcc gacagttgca caaaactatc
    10381 gtcagcgaca aaggccgcgc ggtatttaac ggtttgatca acgtcgcgca gcacgccatc
    10441 aaaacggatg gtcagatgac caacaataat ctgctgatgg gcaaactggc ggaagtggat
    10501 acgaaaccgc tgctggaaat ctatgcagat gatgtgaaat gcagccacgg cgcgacggtg
    10561 gggcgtattg atgatgaaca gatgttctat ctgcgctcgc gcgggatcaa tcagcaggat
    10621 gcccagcaga tgatcattta cgcctttgct gccgaactga cggaagcact gcgtgatgag
    10681 gggcttaaac agcaggtgct ggcccgaatc ggtcaacggc tgccaggagg tgcaagatga
    10741 ctttttccgt cgacaaagtg cgggccgact ttccggtgct ttcgcgtgag gtaaacggtt
    10801 tgccgctggc ttatctcgac agcgccgcca gtgcacagaa accgagccag gtgattgacg
    10861 ccgaggccga gttttatcgt catggctacg cggcggtgca tcgcggtatt cataccttaa
    10921 gcgcccaggc gaccgagaaa atggagaacg tgcgcaagcg ggcatcgctg tttattaatg
    10981 cccgttcggc ggaagagctg gtgttcgtcc gcggcacgac ggaagggatc aatctggtcg
    11041 ccaatagctg gggcaacagc aatgtgcggg cgggcgataa catcatcatc agtcagatgg
    11101 agcaccacgc taacattgtc ccctggcaga tgctttgcgc acgcgttggc gcagagctgc
    11161 gtgtgatccc tctcaacccc gacggtacgc tgcaactgga gacgctgcat acgctgtttg
    11221 atgagaaaac tcgcctgctg gcaattactc atgtctccaa cgtgcttggc acagaaaatc
    11281 cactggcggg aatgatcacg cttgcgcacc agcatggcgc aaaagtgctg gtggatggcg
    11341 ctcaggcggt gatgcatcat ccggtggatg ttcaggcgct ggattgcgat ttttacgtgt
    11401 tttccgggca taaactgtat ggccccaccg ggattggcat tctttatgtc aaagaagcct
    11461 tgttgcagga gatgccgccg tgggaagggg gcggttctat gatcgccacc gtcagcctga
    11521 gtgaaggcac tacctggacc aaagcaccat ggcggtttga agccggtaca cccaataccg
    11581 ggggcatcat tggtcttggc gcggcgctgg aatatgtttc ggtgctgggg cttaataaca
    11641 tagccgagta tgaactgaat ctgatgcatt acgcgctatc acagctggaa tctgtaccga
    11701 atctcactct ctatggccca caaaacaggc ttggcgttat tgcttttaat ctcggaaaac
    11761 accacgccta tgatgttggc agttttctcg ataattacgg cattgctgtg cgtaccggac
    11821 atcactgcgc tatgccatta atggcctatt acaacgtccc tgcgatgtgt cgggcgtcgc
    11881 tggccatgta taacactcat gaagaagtgg atcgtctggt gaccggcctg caacgtattc
    11941 accgtctgct gggataacag ggaggcacta tggctttatt gccggataaa gaaaaattgc
    12001 tgcgtaattt tttacgctgc gccaactggg aagagaaata tctctacatt attgagctgg
    12061 gccagcgtct gccagaatta cgcgacgaag accgaagccc acaaaatagc attcagggct
    12121 gccagaatca ggtgtggatt gtcatgcgcc agaatgcgca gggaattatt gaattgcagg
    12181 gcgacagcga tgcggcgatt gtgaaagggc ttattgcggt cgtatttatt ctctacgatc
    12241 agatgacgcc gcaggatatt gtcaatttcg atgtgcgtcc gtggtttgaa aaaatggcgc
    12301 tcacccaaca tctcacccca tctcgttcac aaggtctgga agcgatgatt cgcgcaattc
    12361 gcgccaaagc cgctgcactt agctaaacta aagggacagc tttcatccgg ttggctcaca
    12421 ttgccggatg gtcaatgttt acactgacct gcacaggagt gttttggttt caggtgaaca
    12481 taagcgccat ccgacgtttc agcgtgagtc tccggcaaat acaggaggtt tacaatgaaa
    12541 cgcgagtctt tgcttacact cacgcttatc ggcgctttta gcgccatcca ggctgcctgg
    12601 gcggttgatt atccgctacc accaaccgga agccgactgg ttgggcaaaa tcaaacgtat
    12661 acggtgcaag aaggggataa aaaccttcag gctattgccc gacgttttga tactgcggca
    12721 atgttgatcc ttgaagccaa tacactatcg ccccggtgcc aaaacctggt acgacgataa
    12781 ctattccttc acaactgtta ttacctgatg caccgcgtca ggggattatc gttaaccttg
    12841 cagagctgcg cctttattat tatccgccgg gagaaaatat cgtgcaggtt tatccgatag
    12901 gtattggctt gcaggggctg gaaacgccgg tgatggaaac gcgtgtgggg cagaaaatcc
    12961 ctaatccaac ctggacgcct acggcaggca ttcgtcaacg ttcgctggag cgtggcatta
    13021 aattactgcc agtcgttcct gccggaccaa ataacccgct aggacgttac gcactgcgct
    13081 tcgcgcatga taatggcgaa tacctcattc atggtaccag tgcgccggac agcgtcggtt
    13141 tgcgcgtcag ttcgggctgt attcgcatga atgcaccgga tattaaagcc ttattctcca
    13201 gcgtgcggac gggaacgccg gtgaaagtga tcaacgaacc ggtgaaatat tccgtggagc
    13261 ctaacgggat gcgttatgtt gaagtacatc gaccactatc ggcagaagaa cagcagaacg
    13321 ttcagacaat gccatacaca ctgccagcag gctttacgca atttaaagac aataaggctg
    13381 tagatcagaa gttagtcgat aaagcgttgt atcgtcgggc agggtatccg gtttcggtga
    13441 gcagtggagc aactcccgca gccagcaatg cgccttcagt agagtcagcg cagaatggtg
    13501 aaccagagca agggaatatg ttacgcgcga ggcagtagtg gtaaatagca gacaaaaaaa
    13561 atggcgcaca atgtgcgcca tttttcactt cacaggtact attacttgcg gtatttagta
    13621 gccatgttgt ccagacgctg gttagcacga gctgcgtcat ctttagcagc ctgaacgtcg
    13681 gaacgcattg cgttcacgtc gttgctcagc tggtcaactt tagcgttcag agtctgaacg
    13741 tcagaagaca gctgatcgat tttagcgttg ctggagcaac ctgccagcag agtagaaccc
    13801 aggattaccg cgcccagtac cagtttagta gctttcatta ttaataccct ctagattgag
    13861 ttaatctcca tgtagcgtta caagtattac acaaagtttt ttatgttgag aatatttttt
    13921 tgatgggaag gcacttattt ttgatcgttc gctcaaagaa gcatcgaacg ctgggtttta
    13981 gataaaaaaa ttgagagaaa acaggatgct tccatcggat tcatcttaga taaagtgaga
    14041 ttatatagtg aaatccgatt tgatttttta ttgcttctgg ttatcgatta aataaaaaaa
    14101 gcgcccatca gggcgcttcg atatacaaat taattcacaa aagcaatatt acaggacgtg
    14161 aacagatgcg gtgttagtag tgccgctcgg taccagtgca ccagaaacca taactacaac
    14221 gtcacctttg tgtgccagac cgctctgcag agccagttct ttacccagac ggtagaaatc
    14281 atcagtagaa gtgatctctt taaccagctg cggcacaacg cctttgctca gtaccaactg
    14341 atgagccgtt ttttcgttgg tggtcagtgc caggatggtg gcatccggga agtatttacg
    14401 tactgcgcga gcagatttac cgccctgagt agcaaccacg atcagcggag catccagttt
    14461 ttcagcagtt tcaacggcac cacggcatac cgcttcggta atgcgcagtt tacggttgtc
    14521 attgttgaac tcgagacggc tgttcatcac gcggtcggta cgttcgcaga tggtcgccat
    14581 gatagaaacc gcttccagcg ggtatttacc ttttgcggat tcaccagaca gcatcactgc
    14641 atcagtaccg tcgaggatgg cgtttgcaac gtcaccggct tctgcgcgag tcgggcgtgg
    14701 gtttttaatc atggaatcca gcatctgggt cgcagtgata acgactttac gtgcacggat
    14761 acatttttcg atcatcatct tctgggcgaa gataacttct tctaccggga tttctacacc
    14821 caggtcgcca cgcgcaacca tgatgccgtc agaggcttcg aggatttcgt cgaagttgtt
    14881 gaggccttcc tggttttcga ttttggagat gatgtggatg ttttcgccgc cgtgcgcttt
    14941 caggtgctca cggatttcga taacgtcaga acgcttacga ataaaggaag cagcaacaaa
    15001 gtctacgcct tgttcgcaac caaagatcag gtcctgtttg tctttttcag ccagtgctgg
    15061 cagagcaatg gaaacgccag gcaggttcac acctttgttt tcgcccaggt caccgttgtt
    15121 cagcacttta cagataactt tgttaccttc aatggcggta acttccatac cgatcagacc
    15181 atcgtcaacc agtacggtgt tgccaactga caggtcagta gtgaaacctt catacgttac
    15241 cgcaaccatt tcgctgttgc cgataacaga tttatcagtg gtgaaagtaa aggtctgacc
    15301 agctttcaga gaaacgtcgt taccgccttc cagtttcatg gtgcggattt ccggaccttt
    15361 ggtatcaagc aggatagcgg cggttttacc agttttgctc atcacgttgc gcagattctg
    15421 aatgcgctga ccgtgttctg catagtcacc atgagagaag ttcagacgca taacgttcat
    15481 gccagcgtcc agcattttag ctaacatctc ttcagattcg gttttcggtc cgatggtgca
    15541 aacaattttg gtctttttca tgacagtctt agtctttaag ttgagaagga tgggagaaac
    15601 ttgctttctg ggcgcactgc cggaaagcga atccggtatt acgaaagtgg tggtgcctcg
    15661 ctctaaggat aggtgacatc gaaaaagcgt gcagaggaat gtgtgcttgt gtctcagccc
    15721 aacgtgagtg cctgtttttg agtcgttgag ttctacagtc caaagtgctg aaaccattca
    15781 agagtcaatt ggcgcgcatt atacgctgaa attaatccaa aaggaaaaca aaaacagcgt
    15841 ttcaaaaaat atacaacttg ttagacaata aattgttatc aaagatttaa cgttccaggg
    15901 aaaaggttac gcaaaaactt cgctgtttgc gcaacgtctg gtgccaaagt tgtcagtgtg
    15961 aggataagtg aaagttcatc cggtgtataa atatatcatc gctcaattgc tacagttaaa
    16021 ataatttatc gcgttatttg tctgattttg tttgattttt gtttaattgg ttagattgat
    16081 atatgctgat agttggcatg ataaataggt ataaagaatg ggaaatcgga caaaagagga
    16141 tgaactgtac cgagaaatgt gcagagttgt cggtaaagtt gtgctggaaa tacgcgatct
    16201 ggggcaggaa ccaaagcata ttgttatcgc aggcgtatta cgtacagcat tagccaataa
    16261 acgcattcag cgcagtgagc tggataagca ggcgatggaa accgtcatta acgcactggt
    16321 aaaatgacca ttcaggatga ggcggtaagc ttcat
//
LOCUS       DADMHM010000077        16199 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.078, whole genome shotgun sequence.
ACCESSION   DADMHM010000077 DADMHM010000000
VERSION     DADMHM010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 16199)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16199)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16199
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.078"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..184)
                     /locus_tag="JN125_002187"
     CDS             complement(<1..184)
                     /locus_tag="JN125_002187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001341904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871961.1"
                     /translation="MKNIKLLGSAMLVSLALFSQNSLAKEYKIGASLLTQQHPFYIDL
                     ANAMKEEAKKDNVNLSV"
     gene            complement(220..1074)
                     /locus_tag="JN125_002188"
     CDS             complement(220..1074)
                     /locus_tag="JN125_002188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000275530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose bisphosphate family class II aldolase"
                     /protein_id="HAY8871962.1"
                     /translation="MYIISSKNMLKKAQSEGYAVPAFNIHNLETLQVVVESAAQLRSP
                     VMLAGTPGTYRYGGVGSLISLVQSLAREYNLPLVLHLDHHEESDDIFNKVRAGIRSVM
                     IDGSHLPFEDNIARVQEVTTFCHRFDVSVEVELGRLGGQEDDLLVDEKDSAYTSPAAA
                     AEFVQRTQIDSLAVAIGTAHGLYAHEPRLDFVRLEQIRQRVEIPLVLHGASGLSEQDV
                     QHCIRRGICKVNVATELKIAFADALKGYFYNNPAANDPRHYMQPAKAAMKEVVTRIIG
                     VCGSEGKI"
     gene            1416..2246
                     /locus_tag="JN125_002189"
     CDS             1416..2246
                     /locus_tag="JN125_002189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000843961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HAY8871963.1"
                     /translation="MKSVNVPRKSSNLLKRRLKIAEIVAAQGEIKVDDLSAQLGVSGV
                     TIRGDLSYLEQQGYLKRSFGGAIATPLSSEPEAIQPIAPLSLAQQMEIARHCARLIRD
                     RDTLFLGHGTICRKIIPLLSEVKKLRLITNDPEHALLANQFIDGEIILAGSEMLRPDT
                     ALAGKPLEQALQHFTITHSILEINHLDADGTLNINVPRLAAAWQLCFDHAQNKTVIVA
                     ADPAPSTAAIGHLHQAENVIVSRSINEQYQQQLQSADFVILYTSNECFTWSNRERLQE
                     "
     gene            2278..3213
                     /locus_tag="JN125_002190"
     CDS             2278..3213
                     /locus_tag="JN125_002190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001446002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HAY8871964.1"
                     /translation="MGELLAEFLSRNPHQKFTQPGEFIGPFPSGAPAIFAAQVAKLSH
                     RAIFFGCVGNDDFGRLIIERLRHEGVITDGIHVMNNAVTGTAFVSYQNPQQRDFVFNI
                     PNSACGLFTAEHIDKDLLKQCNHLHIVGSSLFSFRMIDVMRKAITTIKSAGGTVSFDP
                     NIRKEMLSIPEMAQALDYLIEYTDIFIPSESELPFFARHKNLSEEQIVSDLLHGGVKH
                     VAIKRAQRGASYYKLKNGTLHAQHVTGHDIEIIDPTGAGDCFGATFITLFLSGFPAHK
                     ALQYANASGALAVMRQGPMEGISSLADIEDFLQQH"
     gene            3306..3548
                     /locus_tag="JN125_002191"
     CDS             3306..3548
                     /locus_tag="JN125_002191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhdT family protein"
                     /protein_id="HAY8871965.1"
                     /translation="MDTRFVQAHKEARWALGLTLLYLAVWLAAAYLPDVAPGFTGFPR
                     WFEMACILTPLLFIGLCWAMVKFIYRDIPLEDDDAA"
     gene            3538..4989
                     /gene="panF"
                     /locus_tag="JN125_002192"
     CDS             3538..4989
                     /gene="panF"
                     /locus_tag="JN125_002192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312157.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/pantothenate symporter"
                     /protein_id="HAY8871966.1"
                     /translation="MQLEVILPLVAYLVVVFGISVYAMRKRSTGTFLNEYFLGSRSMG
                     GIVLAMTLTATYISASSFIGGPGAAYKYGLGWVLLAMIQLPAVWLSLGILGKKFAILA
                     RRYNAVTLNDMLFARYQSRLLVWLASLSLLVAFVGAMTVQFIGGARLLETAAGIPYET
                     GLLIFGISIALYTAFGGFRASVLNDTMQGLVMLIGTVVLLIGVVHAAGGLSNAVETLQ
                     TIDPQLVTPQGADDILSPAFMTSFWVLVCFGVIGLPHTAVRCISYKDSKAVHRGIIIG
                     TIVVAILMFGMHLAGALGRAVIPDLTVPDLVIPTLMVKVLPPFAAGIFLAAPMAAIMS
                     TINAQLLQSSATIIKDLYLNIRPDQMQNETRLKRMSAVITLVLGALLLLAAWKPPEMI
                     IWLNLLAFGGLEAVFLWPLVLGLYWERANAKGALSAMIVGGVLYAVLATLNIQYLGFH
                     PIVPSLLLSLLAFLVGNRFGTSVPQATVLTTDK"
     gene            5001..5882
                     /gene="prmA"
                     /locus_tag="JN125_002193"
     CDS             5001..5882
                     /gene="prmA"
                     /locus_tag="JN125_002193"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HAY8871967.1"
                     /translation="MPWIQLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPL
                     PGETRLWGDTDVIGLFDAETDMNDVVAILENHPLLGAGFAHKIEQLEDKDWEREWMDN
                     FHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLTGK
                     TVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRDNAERNGVSDRLELYLPKDQ
                     PEEMKADVVVANILAGPLRELAPLISVLPVSGGLLGLSGILASQAESVCEAYADSFAL
                     DPVVEKEEWCRITGRKN"
     gene            6211..7176
                     /gene="dusB"
                     /locus_tag="JN125_002194"
     CDS             6211..7176
                     /gene="dusB"
                     /locus_tag="JN125_002194"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008785970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HAY8871968.1"
                     /translation="MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSS
                     NPQVWESDKSRLRMVHIDEPGIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPA
                     KKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCEEIAQLAED
                     CGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGA
                     DALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPAKGY
                     RIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYFENFA"
     gene            7202..7498
                     /gene="fis"
                     /locus_tag="JN125_002195"
     CDS             7202..7498
                     /gene="fis"
                     /locus_tag="JN125_002195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001465625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator Fis"
                     /protein_id="HAY8871969.1"
                     /translation="MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNG
                     QDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN"
     gene            7584..8468
                     /gene="yhdJ"
                     /locus_tag="JN125_002196"
     CDS             7584..8468
                     /gene="yhdJ"
                     /locus_tag="JN125_002196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417728.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine-specific DNA-methyltransferase"
                     /protein_id="HAY8871970.1"
                     /translation="MRTGCEPTRFGNEAKTIIHGDALAELKKIPAESVDLIFADPPYN
                     IGKNFDGLIEAWKEDLFIDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKLF
                     TIKSRIVWSYDSSGVQAKKHYGSMYDPILMMVKDAKNYTFNGDAILVEAKTGSQRALI
                     DYRKNPPQPYNHQKVPGNVWDFPRVRYLMDEYENHPTQKPEALLKRIILASSNPGDIV
                     LDPFAGSFTTGAVAVSSGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTG
                     NLSKRSRLSEVDPDLIAK"
     gene            8552..8731
                     /locus_tag="JN125_002197"
     CDS             8552..8731
                     /locus_tag="JN125_002197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2556 domain-containing protein"
                     /protein_id="HAY8871971.1"
                     /translation="MIRKYWWLVVFAVFVFLFDTLLMQWIELLTTETDKCRNMNSVNP
                     LKLVNCDELNFQDRM"
     gene            complement(8734..9396)
                     /gene="acrS"
                     /locus_tag="JN125_002198"
     CDS             complement(8734..9396)
                     /gene="acrS"
                     /locus_tag="JN125_002198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter transcriptional
                     repressor AcrS"
                     /protein_id="HAY8871972.1"
                     /translation="MAKRTKAEALKTRQELIETAIAQFAQHGVSKTTLNDIADAANVT
                     RGAIYWHFENKTQLFNEMWLQQPSLRELIQEHLTAGLEHDPFQQLREKLIVGLQYIAK
                     IPRQQALLKILYHKCEFNDEMLAEGVIREKMGFNPQTLREVLQACQQQGCVANNLDLD
                     VVMIIINGAFSGIVQNWLMNMAGYDLYKQAPALVDNVLRMFMPDENITKLIHQTNELS
                     VM"
     gene            9795..10952
                     /gene="acrE"
                     /locus_tag="JN125_002199"
     CDS             9795..10952
                     /gene="acrE"
                     /locus_tag="JN125_002199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit AcrE"
                     /protein_id="HAY8871973.1"
                     /translation="MTKHARFFLLPSFILISAALIAGCNDKGEEKAHVGEPQVTVHIV
                     KTAPLEVKTELPGRTNAYRIAEVRPQVSGIVLNRNFTEGSDVQAGQSLYQIDPATYQA
                     NYDSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQQEYDQAIADARQADAAVIAAK
                     ATVESARINLAYTKVTAPISGRIGKSTVTEGALVTNGQTTELATVQQLDPIYVDVTQS
                     SNDFMRLKQSVEQGNLHKENATSNVELVMENGQTYPLKGTLQFSDVTVDESTGSITLR
                     AVFPNPQHTLLPGMYVRARIDEGVQPDAILIPQQGVSRTPRGDATVLIVNDKSQVEAR
                     PVVASQAIGDKWLISEGLKSGDQVIVSGLQKARPGEQVKATTDTPADTASK"
     gene            10964..12673
                     /locus_tag="JN125_002200"
     CDS             10964..12673
                     /locus_tag="JN125_002200"
                     /inference="COORDINATES: protein motif:HMM:TIGR00915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter permease subunit"
                     /protein_id="HAY8871974.1"
                     /translation="MANFFIRRPIFAWVLAIILMMAGALAILQLPVAQYPTIAPPAVS
                     VSANYPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDI
                     AQVQVQNKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVAS
                     NVKDTLSRLNGVGDVQLFGAQYAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQ
                     LGGTPALPGQQLNASIIAQTRLKNPEEFGKLTLRVNSDGSVVRLKDVARVELGGENYN
                     VIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ
                     LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINT
                     LTMFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLS
                     AVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENK
                     GGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSYLKRIR
                     VSF"
     gene            12676..13152
                     /locus_tag="JN125_002201"
                     /pseudo
     CDS             12676..13152
                     /locus_tag="JN125_002201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005077209.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            13189..14061
                     /locus_tag="JN125_002202"
     CDS             13189..14061
                     /locus_tag="JN125_002202"
                     /inference="COORDINATES: protein motif:HMM:NF013069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871975.1"
                     /translation="MNQTISTALGGTYVNDFIDRGRVKKVYVQADAKFRMLPEDVDKL
                     YVRSANGEMVPFSAFTTSHWVYGSPRLEHYNGLPSMEIQGEAAPGTSSGDAMALMENL
                     ASKLPAGIGYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVV
                     PLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKGVVEA
                     TLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFF
                     VPVFFVVIRRCFKG"
     gene            14314..14535
                     /locus_tag="JN125_002203"
     CDS             14314..14535
                     /locus_tag="JN125_002203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8871976.1"
                     /translation="MKRLIPVALLTALLAGCAHDSPCVPVYDDQGRLVHTNTCMKGTT
                     QDNWETAGAIAGGAAAVAGLTMGIIALSK"
     gene            14966..15991
                     /locus_tag="JN125_002204"
     CDS             14966..15991
                     /locus_tag="JN125_002204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312168.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY8871977.1"
                     /translation="MKKMMIATLAAASVLLAVANQAHAGATLDAVQKKGFVQCGISDG
                     LPGFSYADADGKFSGIDVDVCRSVAAAVFGDDTKVKYTPLTAKERFTALQPGEVDLLS
                     RNTTWTSSRDAGMGMAFTGVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELN
                     VADYFKANNMKYTPVTFDRSDESAKALESGRCDTLASDQSQLYALRIKLSNPAEWIVL
                     PEVISKEPLGPVVRRGDDEWFSIVRWTLFAMLNAEEMGINSQNVDEKAANPATPDMAH
                     LLGKEGDYGKDLKLDNKWAYNIIKQVGNYSEIFERNVGSESPLKIKRGQNNLWNNGGI
                     QYAPPVR"
     gene            16059..>16199
                     /locus_tag="JN125_002205"
     CDS             16059..>16199
                     /locus_tag="JN125_002205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312169.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAY8871978.1"
                     /translation="MSHRRSTVKGSLSFANPTVRAWLFQILAVVAVVGIVGWLFHNTV
                     TNL"
BASE COUNT         4068 a         3860 c         4018 g         4253 t
ORIGIN      
        1 agacacttaa attgacattg tctttttttg cctcttcttt catggcattc gcaagatcaa
       61 tatagaaagg atgttgctgt gttaataatg acgcaccaat tttatactct tttgccaacg
      121 aattttgcga gaacaatgcc aggctcacca acatagctga accaagtaat ttaatatttt
      181 tcataaacaa tcctcattgt ttttgtaggg tacaacgtct taaatttttc cttcactacc
      241 acagacacca ataatacgag ttacgacttc tttcatggcg gcctttgcgg gctgcatata
      301 gtggcgtgga tcatttgccg caggattgtt gtagaaatat ccttttaacg catcggcaaa
      361 cgcaattttc aattctgtcg cgacattcac tttacaaata ccgcggcgaa tacagtgctg
      421 aacgtcctgt tctgataagc ccgaagcacc atgcaacacc agtggaatct ccactcgctg
      481 acgaatctgt tccagccgca caaaatccag tcgtggttca tgcgcatata aaccatgtgc
      541 tgtgccgatt gctacggcca gggagtcaat ttgggtacgt tgaacaaact ctgcagctgc
      601 ggctggtgag gtataagcgg aatctttttc atccaccagc agatcgtcct cctggccgcc
      661 aagacgccct agctcgacct caacgctaac atcaaagcga tggcaaaagg tggtaacttc
      721 ttgcactcgc gcaatgttgt cttcaaatgg caaatgggag ccatcaatca tgacagaacg
      781 gatccctgcg cgaaccttgt taaaaatgtc atcactctct tcatgatggt cgagatgcag
      841 gactaacggc aggttgtact cgcgagccag cgattgtact aacgaaatta aacttcccac
      901 gccaccataa cgataagtac cgggtgttcc cgccagcata acgggagagc gaagttgtgc
      961 agcgctctca acaactacct gtaaagtttc aaggttatga atgttgaaag cggggacggc
     1021 atatccctct gactgggctt ttttcagcat gtttttgctt gaaatgatgt acatcgcagc
     1081 tcctgttatt tgtcgttcgc cttacaaaat gaagaaagag aatattcact ttcattttga
     1141 aagcaaacta gcacagcaaa agcggcaaaa agcgtgatgc atgtcgaata tcatcaaaat
     1201 aacttacaaa aaataactta atttgttttt cactttacaa gtgaaaccaa taacatctct
     1261 gcataaatat gaataaattc atttattttt caatgaatta atctattttt gttgcgattt
     1321 ttgacccatg attttctttt cgaattgtcg atattattga aggataactt tcaaagaaaa
     1381 atacaagggg ctatagtgtt acgcattaaa ggccaatgaa gagtgttaac gtgccgagaa
     1441 aatcgtctaa cctactgaaa cgcagattaa aaattgcaga aattgttgcc gcccaaggtg
     1501 aaatcaaagt tgatgactta tctgcgcaac ttggtgtctc tggcgtgacg atccgcggcg
     1561 atctcagtta tctggagcaa cagggatatt taaagcgatc atttggcggt gctattgcga
     1621 caccactctc ctctgaacca gaagcgatac aaccgatcgc gccattgtct ctggcacaac
     1681 aaatggaaat agcacgacat tgcgcacggt taattcgcga tcgtgacacg ctatttcttg
     1741 gacatgggac aatctgccgt aagatcattc cattgctcag cgaagtgaaa aaactgcgtc
     1801 tgatcaccaa cgatcccgaa catgcgctgc tggcaaatca gtttattgat ggcgaaataa
     1861 tactggctgg cagtgaaatg ctgcgccccg acaccgcact ggccggaaaa ccgcttgaac
     1921 aggcacttca gcatttcacc attacacata gcattctgga aatcaaccat ctggatgctg
     1981 atggtacttt aaatatcaac gttcccagac tggccgctgc ctggcagctc tgtttcgatc
     2041 atgcccagaa taagacggtt atcgttgccg ccgatcctgc gccatcaacg gctgctatcg
     2101 ggcatttgca tcaggcagaa aatgtgatcg tcagccgcag cattaacgaa caatatcagc
     2161 aacaattgca gtcggctgat ttcgttatcc tttataccag taatgagtgc tttacctggt
     2221 ccaatcgcga aaggcttcag gaatgagagg ggttttgtga caataactat ctgcgctatg
     2281 ggcgaattgc tggccgagtt tttgtcccgc aacccacatc aaaaattcac tcagcctggg
     2341 gagtttatcg ggccatttcc cagcggtgcg ccagcaattt ttgctgctca ggtggcaaaa
     2401 ctgtcccatc gggccatctt cttcggatgt gttggtaatg atgattttgg ccgactcatt
     2461 atagagcgcc tccgtcatga aggtgtcatt accgatggga tccatgttat gaacaatgcc
     2521 gtcacaggta cggcgttcgt gagttatcaa aatccccagc agcgcgattt cgtctttaat
     2581 atccctaaca gcgcctgcgg cttgtttact gctgagcaca ttgataagga tctgctaaaa
     2641 cagtgtaacc atctccatat tgtgggctca tcgttgttct catttcgcat gatcgatgtc
     2701 atgcgtaaag caataacgac gatcaaatcg gctggcggca ccgtttcttt cgatcccaat
     2761 attcgcaaag agatgctgag cattcctgaa atggcgcagg ctctcgatta tttgattgaa
     2821 tatacggata ttttcatccc cagcgaaagc gaactccctt tcttcgcgcg tcacaaaaat
     2881 ctgtcagaag aacagattgt tagcgatctt ctccacggcg gcgtaaaaca tgtggcgata
     2941 aaacgcgccc agcgtggggc cagctattac aagcttaaaa acggtacatt acacgcccag
     3001 catgttacag gccacgatat cgaaattatc gatccaacgg gtgcaggcga ctgctttggc
     3061 gcaacgttta tcactctttt cttatccggt ttcccggcac ataaggcact gcaatatgca
     3121 aatgccagcg gcgcgctcgc cgtaatgcgg caaggtccga tggaagggat atcctcactg
     3181 gctgacattg aagacttttt gcagcagcac tgaacggcaa ttttctgtca gattattttc
     3241 cctgcctgaa gagttgccgt agaattgccc gtttctcgta tccccccatg aggaggaacc
     3301 cttccgtgga cactcgtttt gttcaggccc ataaagaggc gcgctgggcg ctggggctga
     3361 cccttttgta tctggcagtt tggttagcag ccgcttactt acctgacgtt gcccccggtt
     3421 ttaccggctt tccgcgctgg tttgagatgg cctgcatcct gacgccgctg ctgtttattg
     3481 gactgtgctg ggcgatggtg aaatttatct atcgcgatat cccactggag gatgacgatg
     3541 cagcttgaag tgattctacc gctggtcgcc tatctggtgg tggtgttcgg tatctctgtt
     3601 tatgcgatgc gtaaacggag caccggtacc ttccttaatg agtatttcct cggcagccgc
     3661 tctatgggcg gtattgtgct ggcgatgacg ctcaccgcga cctatatcag tgcaagttcg
     3721 tttatcggcg ggcctggagc tgcttataaa tacggcctgg gttgggtatt gctggcgatg
     3781 attcagcttc ctgcagtctg gctttcgctc ggtattctcg gcaagaagtt cgcgattctt
     3841 gcgcgccgct acaatgcagt gacgctgaac gacatgctgt ttgcccgcta ccagagtcgt
     3901 cttctggtgt ggctggcgag tttgagtttg ctggttgcgt tcgttggggc aatgaccgtg
     3961 cagtttatcg gcggtgcgcg cctgctggaa accgcggcgg gtattcctta tgaaaccggg
     4021 ctgctgattt tcggtatcag cattgcgttg tataccgcct ttggcggctt tcgcgccagc
     4081 gtgctgaacg acaccatgca agggcttgtg atgctgattg gcaccgttgt gctgcttatt
     4141 ggcgtggtac atgccgcagg tggtttaagt aatgcggtag agacgctgca aaccatcgat
     4201 ccgcaactgg ttacgccaca aggcgctgac gatattctgt cgcctgcctt tatgacgtcg
     4261 ttttgggtac tggtgtgctt tggcgtgatt ggcctgccgc atactgcggt gcgctgtatc
     4321 tcttataaag acagcaaagc ggtacaccgg gggatcatca tcggtacgat tgtagtcgca
     4381 atcctgatgt tcggtatgca cctggccgga gcgttaggtc gtgcagtgat ccccgatctc
     4441 accgtaccgg atctggtgat cccgacgtta atggtaaaag tgctgccacc gtttgctgcc
     4501 gggatctttc tggctgcacc tatggctgcg atcatgtcga caattaacgc ccaattgcta
     4561 caaagttccg ctacgatcat taaagatctc tatctgaata tccgtccgga tcaaatgcaa
     4621 aacgagacgc gtctgaagcg gatgtcggcg gtaattacgt tagttctcgg cgcgttgctg
     4681 ctgcttgccg cctggaagcc gccagaaatg atcatctggc tgaatttgct ggccttcggt
     4741 gggttggaag ccgttttcct gtggccgctg gtgctgggtc tttactggga acgcgccaac
     4801 gccaaaggcg cgctaagtgc gatgatcgtt ggcggcgtgc tgtatgccgt actcgcgacg
     4861 ctgaatattc agtacctggg cttccaccct atcgtgccct cgttactact aagtttgctg
     4921 gctttcctgg tcggaaaccg tttcggtaca tccgtcccgc aagctaccgt tttgactact
     4981 gataaataaa gagttttgcc atgccttgga tccaactgaa actgaacacc accggcgcga
     5041 acgctgaaga tcttagcgat gcgctgatgg aagcgggtgc cgtttctatc acttttcagg
     5101 atacccacga tacgccagta tttgagccgc tgccgggcga aacgcgcctg tggggcgaca
     5161 ccgatgtgat tggtctgttc gacgctgaaa ccgatatgaa cgacgtggtg gcgattctgg
     5221 aaaaccatcc gctgctcggc gcaggcttcg cgcataaaat cgaacaactg gaagataaag
     5281 actgggagcg cgaatggatg gataatttcc acccgatgcg ctttggtgaa cgactgtgga
     5341 tctgcccaag ctggcgtgat gtgccggacg aaaacgccgt caacgtgatg ttagacccag
     5401 ggctggcgtt tggtacgggt acccatccaa ctacctctct gtgcctacaa tggctcgaca
     5461 gcctcgattt aactggtaaa acagtcatcg actttggctg cggttccggc attctggcta
     5521 tcgcggcgct gaaactgggt gcagcaaaag ccattggtat tgatatcgat ccgcaggcga
     5581 ttcaggctag ccgcgacaac gccgaacgta atggcgtttc tgaccgtctg gaactctact
     5641 taccgaaaga tcagccagaa gaaatgaaag ccgacgtggt ggtcgcgaac atccttgcag
     5701 gcccattacg tgaactggca ccgttaatca gcgtcctgcc ggtttcaggc ggtttgctgg
     5761 gcctttccgg tattctggca agccaggcag agagcgtttg tgaagcttat gccgatagct
     5821 tcgcactgga cccggtcgtg gaaaaagaag agtggtgccg tattaccggt cgtaagaatt
     5881 aaccttcgca tcgccgtagg gtgacgcggg gcgaagtgcg agcaagctca caaaaggcac
     5941 gtaaatttgc cggttattta cgcaaatttg cgtgccaaaa ttttcattca taaagaaaaa
     6001 ttgagaactt actcaaattt ctttgaatgt aaattttagt cactattttc taatatgatg
     6061 atttttatga gtaattatcg caccacgctc attttaaatg caattctttg atccatctca
     6121 gaggattggt caaagtttgg cctttcatct cgtgcaaaaa atgcgtaata tacgccgcct
     6181 tgcagtcaca gtatggtcat ttcttaactc atgcgcatcg gacaatatca gctcagaaat
     6241 cgcctgatcg cagcgcccat ggctggcatt acagacagac cttttcggac gttgtgctac
     6301 gagatgggag ccggattgac agtatccgag atgatgtctt ctaacccaca ggtttgggaa
     6361 agcgacaaat ctcgtttacg gatggtgcac attgatgaac ccggtattcg caccgtgcaa
     6421 attgctggta gcgatccgaa agaaatggca gatgcagcac gtattaacgt ggaaagcggt
     6481 gcccagatta ttgatatcaa tatgggttgc ccggctaaaa aagtgaatcg caagctcgca
     6541 ggttcagccc tcttgcagta cccggatgtc gttaaatcga tccttaccga ggtcgtcaat
     6601 gcagtggacg ttcctgttac cctgaagatt cgcactggct gggcaccgga acaccgtaac
     6661 tgcgaagaga ttgcccaact ggctgaagac tgtggcattc aggctctgac cattcatggc
     6721 cgtacacgcg cctgtttgtt caatggagaa gctgagtacg acagtattcg ggcagttaag
     6781 cagaaagttt ccattccggt tatcgcgaat ggcgacatta ctgacccgct taaagccaga
     6841 gctgtgctcg actatacagg ggcggatgcc ctgatgatag gccgcgcagc tcagggaaga
     6901 ccctggatct ttcgggaaat ccagcattat ctggacactg gggagttgct gcccccactg
     6961 cctttggcag aggttaagcg cttgctttgc gcgcacgttc gggaactgca tgacttttat
     7021 ggtccggcaa aagggtaccg aattgcacgt aaacacgttt cctggtatct ccaggaacac
     7081 gctccaaatg accagtttcg gcgcacattc aacgccattg aggatgctag cgaacagctg
     7141 gaggcgttgg aggcatactt cgaaaatttt gcgtaaacag aaataaagag ctgacagaac
     7201 tatgttcgaa caacgcgtaa attctgacgt actgaccgtt tctaccgtta actctcagga
     7261 tcaggtaacc caaaaacccc tgcgtgactc ggttaaacag gcactgaaga actattttgc
     7321 tcaactgaat ggtcaggatg tgaatgacct ctatgagctg gtactggctg aagtagaaca
     7381 gcccctgttg gacatggtga tgcaatacac ccgtggtaac cagacccgtg ctgcgctgat
     7441 gatgggcatc aaccgtggta cgctgcgtaa aaaattgaaa aaatacggca tgaactaatt
     7501 caggttagct aaatgcttga ttaaaaaggc gctactcggc atggggaagc gcctttttta
     7561 taggtgtcac aaagggagtg accatgagaa caggatgtga accgacccgg tttggtaatg
     7621 aagctaagac cattattcac ggtgatgcgc ttgccgaact taaaaagatc cccgccgaaa
     7681 gtgtcgatct gatctttgcc gacccaccat ataacatcgg taaaaatttt gatggtctga
     7741 tcgaagcctg gaaagaagat ctgtttatcg actggctgtt tgaagtgatt gcagagtgcc
     7801 accgcgttct gaaaaagcag ggcagcatgt acatcatgaa cagcacggaa aacatgccct
     7861 ttatcgatct ccagtgccgc aagcttttta ccatcaaaag tcgcatcgtc tggtcatatg
     7921 acagttctgg agtacaggcg aaaaaacact acggctccat gtacgacccc atcctgatga
     7981 tggtgaaaga cgcaaagaac tacacattca acggtgatgc tattctggta gaagccaaaa
     8041 ccggatcgca gcgcgcgttg atcgattatc gcaaaaatcc tccacagcca tacaatcatc
     8101 aaaaagtacc gggtaacgtc tgggattttc cgcgcgtgcg ttatttgatg gatgaatatg
     8161 agaaccaccc gacgcaaaaa ccggaagcct tactgaaacg cattattctc gcctcttcca
     8221 acccaggcga tatcgttctc gacccgtttg ccggtagctt tactaccggt gccgtagccg
     8281 tctccagcgg gcgaaaattc attggtattg agatcaacag cgagtacatc aaaatggggc
     8341 ttcgacggct ggatgtcgcg tcgcattact ctgcggaaga actggcgaaa gtgaaaaaaa
     8401 gaaagaccgg caacctgtca aaacgaagcc ggttaagcga agttgacccc gatctcattg
     8461 caaagtaaag gaagtgtaag cctggttttc agattattca tttcgtgtat atttcctgcc
     8521 agacttggtt aaacatgcac aggctcaggt aatgattcgc aagtattggt ggctcgtcgt
     8581 tttcgctgtc ttcgtttttc tgtttgatac tttactgatg cagtggattg aactgctgac
     8641 aacagaaaca gacaaatgcc gtaatatgaa ctcagttaat ccactaaaac tggttaactg
     8701 tgacgaactg aattttcagg acagaatgtg aatttacatg acacttaatt cattcgtttg
     8761 atgaattaat ttcgttatgt tttcatctgg catgaacatt cttaatacgt tatcgaccag
     8821 cgcgggtgct tgtttataaa gatcataacc cgccatattc attaaccagt tttgaacaat
     8881 tccgctgaag gcaccattaa taataatcat cacaacatct aaatcgaggt tatttgctac
     8941 acaaccttgt tgctgacacg cctgcaatac ttcgcggaga gtctgcggat taaagcccat
     9001 cttttcgcgt atcactccct cggccagcat ctcatcatta aattcacatt tgtgatataa
     9061 gattttcagc aacgcctgct ggcggggaat tttggcaata tattgcaagc cgacaatcaa
     9121 tttttcacgc aattgttgaa acgggtcatg ctctaatcca gccgtcaagt gttcctggat
     9181 taactcccgc aatgaaggct gttgcaacca catctcatta aacagttgag tcttgttttc
     9241 gaagtgccag tagatagcgc cacgcgtaac gttagcggcg tcggcaatgt cgttgagcgt
     9301 cgtcttgctt acgccatgct gcgcaaactg ggcgatggca gtttcaatca gttcttgccg
     9361 ggtcttcaga gcttcggctt tggttctttt tgccatgatt aattattcag gaaataaata
     9421 tattcgacac agggtgagaa aatagcgaag gttaatctat catctaatgt gtatttatac
     9481 gagagggtaa cattgagttg ctataaatcg tcaaataaac aatgtatatt atttacctaa
     9541 aatacattcg ccacatgaat atatatttca atttacgagg ttttaattct gcctctttca
     9601 acccgcgtca aaataaaaca gtagaatatt aatctttttt tgtgtttatg tgccttgaga
     9661 cgccagtatt cataactatt ccttacatcg acgaatgata atttgtagga tagcaaactg
     9721 tatttttctt tctgcgagtt aacgcgttgc ctttctgggt aaataacgcg cttttggttt
     9781 tttgaggaat agtaatgacg aaacatgcca ggtttttcct cctgccctcc tttattctga
     9841 tctccgcggc tttaatcgcc ggttgtaacg ataagggaga agagaaagct cacgtcggtg
     9901 aaccgcaggt taccgttcat attgtgaaaa cggccccgtt agaagttaag actgaattac
     9961 caggccgcac caatgcttac cgtatagccg aagttcgccc acaggttagc gggatcgtac
    10021 tgaatcgtaa tttcactgaa ggcagcgatg tacaagcagg ccagtccctg taccagatcg
    10081 atcccgcgac ctatcaggca aattatgaca gcgcgaaagg cgaactggcg aaaagtgaag
    10141 ccgccgccgc catcgcgcat ttgacggtaa aacgttacgt tccgctcgtg ggtacgaaat
    10201 acatcagcca gcaggagtac gaccaggcca ttgctgatgc tcgccaggcc gatgccgccg
    10261 tgattgccgc aaaagccaca gtcgaaagcg ctcgcatcaa tctcgcttat accaaagtga
    10321 ctgcgccaat tagcggacgt atcggcaaat cgaccgtgac cgaaggcgct cttgtcacta
    10381 atgggcaaac gactgaactg gcgactgtcc agcagctcga tcctatctac gttgatgtga
    10441 cccaatccag caacgatttt atgaggctga agcaatccgt agagcaagga aatttgcata
    10501 aggaaaacgc caccagcaac gtagagttgg tcatggaaaa cggtcaaacc tatcccctga
    10561 aaggtacgct gcaattctct gatgtgaccg ttgatgaaag caccggctcc ataaccctac
    10621 gtgctgtctt ccctaacccg caacatacgc ttttgccggg tatgtatgtg cgtgcacgga
    10681 ttgatgaagg cgtccaacct gacgccattc ttatcccgca acaaggcgtt agccgcacac
    10741 cgcgtggtga tgcaaccgtg ctgattgtta acgataaaag tcaggtggaa gcgcgccctg
    10801 tcgttgccag tcaggcgatt ggcgataaat ggttgattag cgaaggtctg aaatctggcg
    10861 atcaagtcat tgtcagcggc ctgcaaaaag cgcgtccggg agagcaggtt aaagccacta
    10921 ccgatacccc cgcagatact gcatcgaagt aaggtaatct gacatggcaa acttttttat
    10981 tcgacgaccg atatttgcat gggtgctggc cattattctg atgatggcgg gcgcactggc
    11041 gatcctacaa ttgcccgtcg ctcagtatcc aaccattgca ccgcctgcgg tttctgtttc
    11101 ggcaaactat ccaggtgctg atgcgcagac cgtgcaggat acggtgacgc aggttatcga
    11161 acagaatatg aatggtatcg ataacctgat gtatatgtcc tccaccagcg attccgccgg
    11221 tagcgtgaca attactctta ccttccagtc cgggaccgat cctgatatcg cgcaagtgca
    11281 ggtgcagaac aaactccagc tcgccacgcc gttgctgccg caggaggttc agcagcaggg
    11341 gatcagtgtt gaaaagtcca gtagcagcta tttgatggtg gcgggttttg tctctgataa
    11401 cccaggcacc acacaggacg atatctcgga ctatgtggcc tctaacgtta aagatacgct
    11461 tagccgtctg aatggcgtcg gtgacgtaca gcttttcggc gcacagtatg cgatgcgtat
    11521 ctggctggac gccgatctgc taaacaaata taaactgaca ccggttgatg tgattaacca
    11581 gttgaaggta cagaacgatc agatcgctgc cggacagttg ggcggaacgc cagcgttacc
    11641 agggcaacag ttgaatgcct cgattattgc tcaaacgcgg ttaaaaaatc cggaagaatt
    11701 cggcaaattg accctgcgcg taaacagtga cggctcggtg gtacgcctga aagatgtcgc
    11761 acgggttgaa cttggcggtg aaaactataa cgttatcgct cgtatcaacg gaaaaccggc
    11821 ggcgggcctg gggattaagc tggcaaccgg cgcgaatgct ctcgataccg cgaaagccat
    11881 taaggcaaaa ctggcggaat tacagccatt cttcccgcag ggaatgaagg ttctctaccc
    11941 ttatgacacc acgccattcg tccagctttc tattcacgaa gtggtaaaaa cgctgttcga
    12001 agccattatg ctggtgttcc tggtgatgta tctgttcttg cagaatatgc gagcaacgct
    12061 gatccccacc attgcggtac ccgtggtgtt gttagggacg tttgccatcc tcgccgcttt
    12121 tggttactcc atcaacacac taacgatgtt cgggatggtg cttgccatcg ggctgctcgt
    12181 cgatgatgcg atagtggtgg tggagaacgt cgagcgcgtg atgatggagg ataagctccc
    12241 gccaaaagaa gcgacggaaa aatcgatgtc gcaaattcag ggcgcactgg tgggtatcgc
    12301 gatggtgctg tcagcggtat ttattccgat ggcattcttc ggcggttcta ctggggcaat
    12361 ttatcgccag ttctctatca ccatcgtttc ggcaatggca ctttctgttc tggtggcatt
    12421 gattcttacc cctgcgttat gtgcaacgct gcttaaaccc gtctctgctg agcatcacga
    12481 aaataagggc ggtttcttcg gctggtttaa taccaccttc gatcatagcg ttaaccacta
    12541 caccaacagc gtcggcaaaa tcctcggttc cacaggacga tatttactga tctatgcgct
    12601 gattgttgca ggaatggtgg tgttgttttt acgtcttcct tcttacctga agaggatcag
    12661 ggtgtctttc tgaccatgat tcagttaccc gctggcgcga cgcaagagcg gacgcaaaaa
    12721 gtgttggatc aagtgacgga ttactatctg aagaacgaga aagcgaacgt tgaaagtgtc
    12781 tttacggtta acggctttag cttcagcggc taggcacaaa acgccggtat ggccttcgtc
    12841 agtctgaaac cgtgggaaga gcgtaatggt gatgaaaaca gtgcggaagc ggtaatccat
    12901 cgtgccaaaa tggaattggg caagatccgc gacggttttg tcattccatt caatatgcca
    12961 gccattgttg aactgggcac ggcaacgggt ttcgactttg agttaattga tcaggctggg
    13021 ctgggtcacg atgccctaac ccaggcccgt aaccagttgc ttggtatggc ggcgcaacat
    13081 cctgccagct tagtcagcgt gcgtcctaat ggcctggaag acaccgcgca gtttaaactg
    13141 gaagttgact aggaaaaggc gcaggcatta agtgtttcac tttctgacat caatcagacc
    13201 atttcaacgg cgttgggtgg gacttacgtt aacgacttca tcgaccgtgg tcgcgtgaaa
    13261 aaggtgtatg ttcaggcgga tgccaaattc cgtatgctgc cagaagatgt cgataaactt
    13321 tatgtccgca gcgccaacgg cgaaatggtg ccattctcgg cctttaccac ttcacattgg
    13381 gtgtatggct ctccgcgact ggaacactac aacggtctgc cgtcaatgga gattcagggg
    13441 gaagccgcgc caggaaccag ttccggcgat gccatggcgt tgatggaaaa ccttgcgtca
    13501 aaattacctg cgggcattgg ttatgactgg acgggtatgt cgtatcagga acgcttatcg
    13561 ggaaaccagg ctcccgctct ggtagcaatt tcctttgtgg ttgttttcct gtgccttgct
    13621 gcactctatg aaagctggtc aattcctgtc tcggttatgt tggtcgtgcc gttagggatt
    13681 gtcggcgtgc tgctggcggc gacactcttt aatcaaaaaa atgacgtcta ctttatggtg
    13741 ggcttgctaa cgacaattgg cttgtcggcc aaaaacgcta ttttgattgt tgagttcgct
    13801 aaagatctca tggagaaaga gggtaaaggt gttgttgaag cgacactaat ggcagtacgt
    13861 atgcgtctgc gtcctatcct gatgacctct ctcgccttta ttctcggcgt attaccgcta
    13921 gctatcagta acggtgcagg cagtggcgcg cagaacgcag tgggtatcgg ggtaatgggc
    13981 ggaatggtct ctgcaacgtt gctggcaatc ttcttcgtac cggtgttctt tgtggtgatc
    14041 cgccgttgct ttaaaggata aatcagaaac ataaaggcac tttcggatgc ctttattatt
    14101 ttcagtgaaa cccataaaaa ttaataagat attcttccac tcactcttta aaaactttct
    14161 atagttcccg ctcccttcac tatttttaca attcacataa tttgtcatta ttcattccgc
    14221 aatatttata acctccggtg ataaaatggc attcagctcg ttaataagag agttaactta
    14281 ttaagcgtta gcgtttatta ctgaggtaac accatgaaaa gattaattcc tgtggcattg
    14341 ctcaccgcat tgctggcggg ctgtgctcac gattcgccct gcgttccggt ttatgacgat
    14401 cagggtcgtc tggttcacac caatacctgt atgaaaggca cgactcagga taactgggaa
    14461 acggctgggg ctattgccgg cggggcagcg gctgttgctg gcctgacgat ggggatcatc
    14521 gctctgtcga aataactgaa cagggcgcgg agtttcgcgc tctgtttaac gatacagtat
    14581 ctttacataa gataaaatat tgctatattc tgctggctaa ttctctgctg atttagcatg
    14641 ttatatcgcg ttatttcgct gctttcgaaa taacgcatca atttaacttt cacacttccc
    14701 accagaaata tactcacgct aacaatcatt attctgctta gtaaaacacg cgtaaatatt
    14761 ctgcgccaaa atgtggcgca tgtttcattt tcgcaccatt gcggggcgct gtttttatta
    14821 tttactgtct acactcagct tattgcgacg cgaaatcgtg cgcaaaagct ggcactactt
    14881 ttgcttataa gaggatggcc acagacaggt aaaagacgtt tcccaaacgt cctataacga
    14941 taattttcgc ctcacaggaa gcattatgaa aaagatgatg atagccacac tggctgccgc
    15001 cagcgtgctg cttgccgttg caaatcaggc gcatgctggc gcgacgcttg atgccgttca
    15061 gaaaaaaggt tttgtgcaat gcgggatcag tgatggatta cctgggttct cttatgccga
    15121 tgcagacggt aagttttcag gtattgatgt tgatgtttgt cgtagtgttg ccgctgctgt
    15181 atttggtgac gacacgaaag tgaaatatac cccactcaca gcaaaagaac gcttcacggc
    15241 tttacagcca ggggaagtgg atttgctctc ccgtaatacg acctggactt catctcgcga
    15301 cgccgggatg ggaatggcat ttactggcgt cacttattac gacggcattg gcttcctgac
    15361 gcacgataaa gcggggctaa aaagcgcgaa agaactggat ggcgctaccg tctgtattca
    15421 ggcgggtact gataccgaac tcaacgttgc cgactatttc aaggcaaaca atatgaagta
    15481 cacaccggtg actttcgatc gctctgacga atcagcgaag gcactggaat ctggtcgctg
    15541 cgatacgctg gcctcggatc agtcgcaact gtatgccctg cgcatcaaat taagcaaccc
    15601 agctgaatgg attgtcttac cggaggttat ctctaaagaa ccgcttgggc cggtagttcg
    15661 tcgtggcgat gatgaatggt tctcgattgt acgctggacg cttttcgcca tgctgaatgc
    15721 tgaagagatg ggcatcaatt cccagaacgt cgatgaaaaa gcggctaatc cagcaacgcc
    15781 tgatatggca catctgctgg gtaaagaagg cgattacggc aaggatctga agttggataa
    15841 taaatgggcc tataacatca tcaaacaggt gggtaactac tcggaaattt tcgagcgtaa
    15901 cgtaggttca gaaagcccgc tgaaaattaa acgtgggcaa aataatctct ggaataacgg
    15961 cggtattcag tacgcgccgc ccgtgcgtta agtcggtgtg aggtaacgag cgtcgctacg
    16021 gcggcgctct cttcagcgtt atgctttccg aggtttctat gtctcatcgc cgctcaaccg
    16081 ttaaaggctc actctccttt gccaacccta cggttcgtgc ctggttattc cagatccttg
    16141 ccgttgttgc tgttgtcgga attgttggtt ggttatttca caacactgta acgaatctc
//
LOCUS       DADMHM010000078        15805 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.079, whole genome shotgun sequence.
ACCESSION   DADMHM010000078 DADMHM010000000
VERSION     DADMHM010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15805)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15805)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15805
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.079"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(1..2651)
                     /locus_tag="JN125_002206"
                     /pseudo
     CDS             complement(1..2651)
                     /locus_tag="JN125_002206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415720.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            complement(3419..4510)
                     /gene="ychF"
                     /locus_tag="JN125_002207"
     CDS             complement(3419..4510)
                     /gene="ychF"
                     /locus_tag="JN125_002207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001538644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HAY8871979.1"
                     /translation="MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVV
                     PMPDPRLDQLAEIVKPQRTLPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGH
                     VVRCFENDNIIHVSGKVNPADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKA
                     ELAVLEKCLPQLENAGMLRALDLSAEEKAAIRYLSFLTLKPTMYIANVNEDGFENNPY
                     LDQVREIAAKEGSVVVPVCAAVEADIAELDDEERDEFMQELGLEEPGLNRVIRAGYKL
                     LNLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAQTISFEDFITYKGEQ
                     GAKEAGKMRAEGKDYIVKDGDVMNFLFNV"
     gene            complement(4627..5211)
                     /gene="pth"
                     /locus_tag="JN125_002208"
     CDS             complement(4627..5211)
                     /gene="pth"
                     /locus_tag="JN125_002208"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HAY8871980.1"
                     /translation="MTIKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAK
                     FFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGV
                     AKLKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQK
                     LIDEAIDEAARCTEMWFTDGLTKATNRLHAFKAQ"
     gene            5489..5767
                     /gene="ychH"
                     /locus_tag="JN125_002209"
     CDS             5489..5767
                     /gene="ychH"
                     /locus_tag="JN125_002209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress-induced protein YchH"
                     /protein_id="HAY8871981.1"
                     /translation="MKRKNASLLGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAH
                     GAVLSIFVGAILWLAGARVGGHEQVCDRYWWVRHYDKRCRRSDNRRHS"
     gene            complement(5822..7501)
                     /gene="dauA"
                     /locus_tag="JN125_002210"
     CDS             complement(5822..7501)
                     /gene="dauA"
                     /locus_tag="JN125_002210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415724.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylic acid transporter DauA"
                     /protein_id="HAY8871982.1"
                     /translation="MNKIFSSHVMPFRALIDACWKEKYTAARFTRDLIAGITVGIIAI
                     PLAMALAIGSGVAPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQFGL
                     AGLLVAALLSGIFLILMGLARFGRLIEYIPVSVTLGFTSGIGITIGTMQIKDFLGLQM
                     VHVPEHYLQKVGALFMALPTINVGDAAIGIVTLGILVFWPRLGIRLPGHLPALLAGCA
                     VMGIVNLLGGHVATIGSQFHYVLADGSQGNGIPQLLPQLVLPWDLPNSEFTLTWDSIR
                     TLLPAAFSMAMLGAIESLLCAVVLDGMTGTKHKANSELVGQGLGNIIAPFFGGITATA
                     AIARSAANVRAGATSPISAVIHSILVILALLVLAPLLSWLPLSAMAALLLMVAWNMSE
                     AHKVVDLLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIARMTRLAP
                     VVVDVPDDVLVLRVIGPLFFAAAEGLFTDLESRLEGKRIVILKWDAVPVLDAGGLDAF
                     QRFVKRLPEGCELRVCNVEFQPLRTMARAGIQPIPGRLAFFPNRRAAMADL"
     gene            complement(7626..8573)
                     /locus_tag="JN125_002211"
     CDS             complement(7626..8573)
                     /locus_tag="JN125_002211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HAY8871983.1"
                     /translation="MPDMKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQI
                     NENVRGGDIFIIQSTCAPTNDNLMELVVMVDSLRRASAGRITAVIPYFGYARQDRRVR
                     SARVPITAKVVADFLSSVGVDRVLTVDLHAEQIQGFFDVPVDNVFGSPILLEDMLQLN
                     LDNPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVL
                     VDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIFSGNAANNLRNSVIDEVVVCDTIP
                     LSDEIKSLPNVRTLTLSGMLAEAIRRISNEESISAMFEH"
     gene            complement(8724..9575)
                     /gene="ispE"
                     /locus_tag="JN125_002212"
     CDS             complement(8724..9575)
                     /gene="ispE"
                     /locus_tag="JN125_002212"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HAY8871984.1"
                     /translation="MRTQWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIE
                     LRDDGDIRLLTPVEGVEHEDNLIVRAARLLMKTAADSGRLPTGSGANISIDKRLPMGG
                     GLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGADVPVFVRGHAAFAEGVGEIL
                     TPVDPPEKWYLVAHPGVSIPTPVIFKDPELPRNTPKRSIETLLKCEFSNDCEVIARKR
                     FREVDAVLSWLLEYAPSRLTGTGACVFAEFDTESEARQVLEQAPEWLNGFVAKGVNLS
                     PLHRAML"
     gene            complement(9575..10198)
                     /gene="lolB"
                     /locus_tag="JN125_002213"
     CDS             complement(9575..10198)
                     /gene="lolB"
                     /locus_tag="JN125_002213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein localization protein LolB"
                     /protein_id="HAY8871985.1"
                     /translation="MPLPDFRLIRLLPLAALVLTACSVTTPKGPGKSPDSPQWRQHQQ
                     DVRNLNQYQTRGAFAYISDQQKVYARFFWQQTGQDRYRLLLTNPLGSTELELNAQPGN
                     VQLVDNKGQRYTADDAEEMIGKLTGMPIPLNSLRQWILGLPGDATDYKLDDQYRLSEI
                     TYSQNGKNWKVVYGGYDTKTHPAMPANMELTDGGQRIKLKMDNWIVK"
     gene            10412..11668
                     /gene="hemA"
                     /locus_tag="JN125_002214"
     CDS             10412..11668
                     /gene="hemA"
                     /locus_tag="JN125_002214"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707119.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HAY8871986.1"
                     /translation="MTLLALGINHKTAPVSLRERVSFSPDKLDQALDSLLAQPMVQGG
                     VVLSTCNRTELYLSVEEQDNLQEALIRWLCDYHNLNEEDLRKSLYWHQDNDAVSHLMR
                     VASGLDSLVLGEPQILGQVKKAFADSQKGHMKASELERMFQKSFSVAKRVRTETDIGA
                     SAVSVAFAACTLARQIFESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRER
                     AQILADEVGAEVIALSEIDERLREADIIISSTASPLPIIGKGMVERALKSRRNQPMLL
                     VDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRKAAAVEAETIVAQETSEFMA
                     WLRAQSASETIREYRSQAEHVRDELTAKALAALEQGGDAQAIMQDLAWKLTNRLIHAP
                     TKSLQQAARDGDNERLNILRDSLGLE"
     gene            11710..12792
                     /gene="prfA"
                     /locus_tag="JN125_002215"
     CDS             11710..12792
                     /gene="prfA"
                     /locus_tag="JN125_002215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012132158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HAY8871987.1"
                     /translation="MKPSIVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQ
                     LSDVSRCFTDWQQVQEDIETAQMMLDDPEMREMAQDELRKAKEKSEQLEQQLQVLLLP
                     KDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYK
                     EIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDIN
                     PADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGA
                     RIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME
                     GKLDMLIEPIIQEHQADQLAALSEQE"
     gene            12792..13625
                     /gene="prmC"
                     /locus_tag="JN125_002216"
     CDS             12792..13625
                     /gene="prmC"
                     /locus_tag="JN125_002216"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HAY8871988.1"
                     /translation="MEYQHWLREAISQLQASESPRRDAEILLEHVTGRGRTFILAFGE
                     TQLTDEQCQQLDALLTRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQA
                     LARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKN
                     IHILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIV
                     HIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRYY
                     Q"
     gene            13622..14014
                     /locus_tag="JN125_002217"
     CDS             13622..14014
                     /locus_tag="JN125_002217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SirB family protein"
                     /protein_id="HAY8871989.1"
                     /translation="MTSFSTLLSVHLISIALSVGLLTLRFWLRYQKHPQAFARWTRIV
                     PPVVDTVLLLSGIALMAKAHILPFSGQAQWLTEKLFGVIIYIVLGFIALDYRRMHSQQ
                     ARIIAFPLALVVLYIIIKLATTKVPLLG"
     gene            14018..14827
                     /locus_tag="JN125_002218"
     CDS             14018..14827
                     /locus_tag="JN125_002218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat-containing protein"
                     /protein_id="HAY8871990.1"
                     /translation="MRSLADFEFNKAPLCEGMILACEAIRRDFPSQDVYDELERLVSL
                     AKEEISQLLPLEEQLEKLIALFYGDWGFKASRGVYRLSDALWLDQVLKNRQGSAVSLG
                     AVLLWVANRLDLPLLPVIFPTQLILRIECPDGEIWLINPFNGESLSEHMLDVWLKGNI
                     SPSAELFYEDLDEADNIEVIRKLLDTLKASLMEENQMELALRTSEALLQFNPEDPYEI
                     RDRGLIYAQLDCEHVALNDLSYFVEQCPEDPISEMIRAQINNIAHKHIVLH"
     gene            14863..15717
                     /gene="kdsA"
                     /locus_tag="JN125_002219"
     CDS             14863..15717
                     /gene="kdsA"
                     /locus_tag="JN125_002219"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HAY8871991.1"
                     /translation="MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTV
                     TQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKIFQELKQTFGVKIITDVHEPSQA
                     QPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN
                     EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRR
                     AQVAELARAGMAVGLAGLFIEAHPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKG
                     FEELDTSK"
BASE COUNT         3934 a         3942 c         4018 g         3911 t
ORIGIN      
        1 catagacatt cagctggctg ttgcctgcgg tgatgtcata ccccagtatc atgctggcac
       61 gccccagcag cgattcgtag tgattcagat gtatattgag gccattactc gccttcatag
      121 ccatctcatt ctggtggctg tatgtaagct gggtttgcgg ctctatatag aacccataac
      181 cagtagggga caggttgaac ctctgcccgg cttccaggga gatgctcatt ccattcgcag
      241 tgccgttggc gttaacgccg ttgttatgac tgtccagtac gtggaaacta tttttctggc
      301 gcgatgcttt tataacgaga tcgctgtaaa aaccgttttg tgccatgtaa ctggcgtaca
      361 ttcccatgta gtctgaacgt gcggtaccgt cgcctccgct atagtccggc gatgcatgtg
      421 ttgagccaat atacagaccg acatacaacg gcatttcatc agagagacgt ttatccccac
      481 caaactggat accgctgtaa cccatgtcaa agccgctcag tttgccactg gcaaaggagt
      541 ccaggcttcc cccataactg tgcaaccaga tattaccgtc tttactctga tttcgcaggt
      601 cacccatccg ttgcatcagc gtacggtttt caacatagtt caataagtaa ccgacattga
      661 gataattgcc gccagcatct gcggtcgtgg tgggtttagg cgtgggagcg ggttcaggcg
      721 taggatcggg gttgactatg ggaggctgag cgggagctgg tgtgggttca ggattaggag
      781 tcggttccgg aactgtcccg gaagcgtaaa gctcccagtt agtgccattt ttacgcacat
      841 cgtacagata tcccccccaa ctcaacctga gaagacgcgc tgaacgaggc cgcgccgtca
      901 gtggttttta ccactgtcag aacttcattt cccgttgtgg cctcgctgcc ctggttgcgg
      961 atagccaata cgtgattacc agcactactc ccgctgatat tcaataaatc ccctttatta
     1021 ttaacgccat taccctcgcc aacaacatca gcacgcataa taaaggtact gttaccgctc
     1081 aggttctcta cgtttaatgt ggcaaatgtg ccggcagttg acccgtggct ggcaaaatcg
     1141 acagttgaat ggctcagcgc cagcgtgtcg agattagaat tacttgttac gttccagacg
     1201 ctgttattca ttgcaacgtc cagttttccg ccattgacat tatcgctgag ggaggaacct
     1261 gtccaaaccg acccagggtg catatccaga ttgattagcc cacctttgga aaaaacgcta
     1321 ccgttgataa gcatacgacc cgaggcgttg atgcggctgg cggcataacc atcgtcatgt
     1381 tgcattgcaa tggccatctg gtcgggtgta ctcatatcaa tgaccagatc gctcgtgagg
     1441 tcgatctggc tgttggtcat ggcataaatt cccctggctc ctgccgcgcc ggtgatagcc
     1501 aaactgtctc cggttattct accgccgctg agcgcccaca aacccagcgc cagactgcca
     1561 ttacgatcaa ctgtaatatc ggtattttgc atgttgacaa cagccgttgc cgtctgggcc
     1621 gaggcaccat aagaaccgcc ggaaaagatg ctgtttcgtt gcgctgccgt gccagaaaaa
     1681 ttgattgtcg cgtctgaacc actggtgacg aggccaccgc cctgcgcgga agaaatatgg
     1741 ctatctgcac cgatagtggt tgtaccacca cgaacttcga cgccattggc cgcggctcca
     1801 gttacatcaa cagtgagtgc attcgcgcta acctggccaa agctccagag gccgtgtgca
     1861 ttatcgccat tggttttaat ggaactgttt gttccgagat cgacaacaga gtttttctgt
     1921 acgcttatcc ccatggcgct gtagccctga acatcgattg tcaggtctgt agccgtaaaa
     1981 cgcgcagcac cattggcgtt attgccgttg agaccaccga tataaacacc tgtacttcca
     2041 tcggtcgtga ttttacttcc gcttccaaga tcgacactgg tgccatagtc attgatggtt
     2101 aggcctatac cgttcgagtt ttcaatggtg aattgagtgg ctgttagtgt tgagctatgc
     2161 ccaataatga tgccgtcatc gttactctta atggtgctgc ctgtgcctaa gtcagcatgg
     2221 gtatagtcac caattaagtt aatgccgatg gcagaggttt gaccaacaac atctactgtg
     2281 agtcggttag ctgtcaggga gctgtttttg ccctgaataa tgattccttt tgcatatcca
     2341 gaggcgtcgt tgacattgac ggtgacatca ttacccaggt tgatattgcc aggcgtgttt
     2401 cctgctgggg tcattacacc atagaggttt cctgatggat cggcggtatc tcctgtaatt
     2461 ctgtcaccat cattaatagt catattggtg ccatattgac ttcctgtatc agcagctatc
     2521 agcagggggg aaaagataat tgcattcaaa ccaatagcgc caaattttat cagttgaatt
     2581 gagggcgaac ggatttttaa ttcagcgaga cgatctgctt tggtattccc attgtgttgt
     2641 ttgatgccca taccactcct atatagtacc cagactatgg gtctatggat tttgtcattt
     2701 tgtttaaatc aatgaataat atcctcttat catcatgata tttgtatggt gtaatcatga
     2761 tgagcttctc agagaataat tctctattac cgggcaaaat caggacacag gaattaatat
     2821 atatttaaca tcccccttac aaaggtgagt ttatatcgac ttattcccta agttgtcgtt
     2881 acttattcca attcgttact ataaatatgg caaaaatatt acaacaaaca gcggttaaaa
     2941 aatttggtga agattttttg taataatcct aattagttat gggaatttcg cttgatgtat
     3001 ctgcataaca aaaacaatat gcgccatttt tgcattactg ataagaaaaa gcaaaaaaca
     3061 tcgatattca tttttggtca atgggttttc tggcctatcg ttgttattgt gctactggtt
     3121 atcattttca tcttgccagc atattggagc gtgatcaatt ttgatcagct gtgaaggtgg
     3181 ctgatgtgta gtgatacaaa aacttacgtt atatcactgc taatgagata tccgtcatct
     3241 gaacacttat gtctttaatt attctcgtgg ttcactatag gcaataagca caaaagtgta
     3301 ggatgttaca agaatgatta ggactcggtg aaatgaaaaa tccacgcaat tgcgtggatt
     3361 ttatatactt ttgcgctctt catgagattt agcgaaacct catgagacaa taaattaatt
     3421 agacgttgaa aaggaagttc atcacatcgc catctttcac gatgtaatct ttaccttctg
     3481 cacgcatttt gcctgcttct ttcgcgcctt gttcaccttt gtaagtgatg aaatcttcaa
     3541 acgagatggt ttgtgcacgg ataaagcctt tttcaaaatc agtatggatt ttgcccgctg
     3601 cctgcggcgc ggttgctcca accggaatgg tccatgcacg cacttctttc accccagcgg
     3661 tgaagtaagt ttgcaggttc agcagcttat aaccggcacg gatcacacgg ttcaggcccg
     3721 gctcttccag cccaagctcc tgcataaact cgtcacgttc ttcgtcgtcc agttcggcaa
     3781 tgtctgcttc aacagcagca caaaccggaa ccacaacaga accttctttc gccgcgattt
     3841 cacgcacctg gtcaagatat gggttgtttt caaaaccgtc ttcgttgacg ttggcgatgt
     3901 acattgttgg tttcagcgtc aggaagctca ggtaacgaat agccgctttc tcttcagcgc
     3961 ttaaatccag cgcgcgcagc atacctgcat tttccaactg gggcaggcat ttttccagga
     4021 ccgccagctc agctttcgcg tctttatcgc cacctttggc tttcttctgt acgcgatgaa
     4081 tcgcacgttc gcaggtgtcg aggtctgcca gcgccagttc ggtgttgata acttcaatat
     4141 cgtcagccgg gttaactttg ccggaaacgt gaatgatgtt gtcattttca aagcagcgaa
     4201 caacgtgacc gatcgcttcg gtttcacgga tgttggtcag gaactggtta cccagacctt
     4261 cgcctttcga tgcgcctttt accagaccgg cgatatcgac aaattccatg gtcgtgggaa
     4321 gcgtacgctg cggttttacg atttcagcca gttgatccag gcgaggatca ggcattggta
     4381 cgacacctgt gttcggctca atggtgcaga atggaaagtt ggccgcttca ataccggctt
     4441 tggtcagcgc gttgaacagg gtagatttcc cgacgttggg caaaccgacg ataccgcatt
     4501 tgaatcccat gatttaaatc accttaatat cttaataatc aacctgttat tgctaacaga
     4561 ttgctgaaat ggaaataact ttgcctatta tacacggcac tcggcaaaaa tgccgcagac
     4621 aacgacttat tgcgctttaa aggcgtgcaa tcggttcgtt gctttggtca agccatctgt
     4681 aaaccacatt tcagtacaac gcgccgcttc gtcaatggct tcatcaatta acttctgttc
     4741 actaacaggc ggtttgccta acacaaaacc gacaacttta tttttatcgc ccggatgacc
     4801 gattccgatg cgtaaacggt gaaagttagg gttattaccc aatttactga tgatgtcttt
     4861 cagtccattg tgaccaccat ggccaccgcc caattttaat ttggcgacgc caggaggcag
     4921 atccagttcg tcgtgggcca ccagaatttc gtccggatta atgcggaaaa aactggccat
     4981 cgccgcaacg gctttgccgc tgagattcat aaatgtagtc gggactaaca ggcggacatc
     5041 ttcgcctcca agagtgactc gcgaagtata accaaagaat ttagcctctt cgcgcagcgg
     5101 agcgcgcaaa cgctctgcca gtaagtcaac gaaccaggca ccagcattat gtcgcgttgc
     5161 ggcgtattca gcaccggggt tcgccaggcc gacaatcaat ttaatcgtca cgtttttttg
     5221 tcctgagtgt gtacataact ggcgcgtagt ttactggttg cggccccgct tgacaaaaaa
     5281 ctgcgtatca aatgcagata acgtaataat tgcctgagtg gactattaga aagtcaaggt
     5341 gttcaggcgt ttatttgtaa agttttgttg aaataagggt tgtaattgtg atcacgcccg
     5401 cacataaccc acagggtgtt gtctatactt tacacataag gaagaggggt attccctgtt
     5461 acaacccaga aagttccgga ggtgacatat gaaacgcaaa aacgcttcgt tactcggtaa
     5521 cgtgctcatg gggttgggtc tggtggtaat ggtggtcggc gtggggtatt caatcctcaa
     5581 ccagttacca cagtttaata tgccccagta tttcgcacat ggtgcagtgc taagtatttt
     5641 cgtcggtgcc attctctggc tggcgggtgc ccgtgttggc gggcatgaac aggtgtgcga
     5701 ccgttactgg tgggttcgcc actatgacaa acgttgccgc cgtagcgata atcgccgtca
     5761 tagctaacaa ataatgcagt ttgctgacca gtcagtttgc gctgactggt caatctcgta
     5821 cttataaatc cgccatcgcc gcgcgacgat tcgggaagaa cgcgaggcgt cccgggatcg
     5881 gttgaatgcc tgcgcgagcc atagtgcgca gtggctggaa ttccacgttg cacacgcgca
     5941 gttcacatcc ttcgggcaga cgcttcacaa aacgctggaa cgcatcaaga ccaccagcat
     6001 caagtaccgg aacggcatcc cacttcagaa tcacaatccg tttgccttca agacgtgact
     6061 ccaggtccgt gaacaagcct tcagcagcag caaaaaacag cgggccaata acgcgcagta
     6121 ccagaacatc gtctggaaca tctacgacta ccggtgccag gcgagtcata cgtgcgatac
     6181 gacgcataaa cagcagcgat gccagcacga tccccacgct gatggcaata accatatcaa
     6241 acagcacggt cagcgacatg cacagcagca tgacaatgat gtcatctttc ggtgcatgac
     6301 gcagcaagtc gaccacttta tgcgcttcac tcatgttcca cgccaccatc aacagcaggg
     6361 ctgccatagc ggaaagcggc agccaggaga gcagcggtgc cagtaccagc agggcaagaa
     6421 taaccagaat agagtggatc accgctgaga taggggaagt tgccccggca cggacgttag
     6481 cggcagaacg cgcgatggca gctgtagcgg taataccacc aaagaatgga gcgataatat
     6541 tccccagtcc ctgtccaacc agttcgctgt tcgccttgtg tttcgtcccg gtcataccat
     6601 ccagtaccac ggcgcagagc agagattcga ttgcgccgag cattgccatt gagaatgccg
     6661 caggcagcag tgtgcgaata gaatcccagg ttagcgtgaa ttctgaatta ggcagatccc
     6721 acggcagcac cagttgcggc agcagttgcg gaataccgtt accctgagaa ccatcggcca
     6781 ggacgtagtg gaattgcgaa ccgatggtag caacatgtcc gccgagcagg ttaacaatcc
     6841 ccatcaccgc gcaaccagcc agcaaggccg gaaggtgacc gggtaaacga atgcccagac
     6901 gcggccaaaa aacaagaata cctagcgtca caatgccaat ggcagcatca cccacattaa
     6961 tggtcggcag cgccataaat aatgcgccga ctttttgtag ataatgttcc gggacatgga
     7021 ccatttgcag accgagaaaa tctttaatct gcatggtacc gatggtgatc ccgatacccg
     7081 aggtgaaacc taaggtgacg gaaaccggaa tatactcaat caggcgacca aagcgtgcca
     7141 gacccatcag aatcaaaaag atccccgaca gcaaggccgc aaccagcagt cctgccagtc
     7201 caaactgttg cgacacggga tagagaatta ccacaaatgc cgcagtcgga ccggaaacgc
     7261 taaagcgtga cccacccgtc agagcaatga caatccccgc aacagctgcg gtatataaac
     7321 cgtactgggg tgccacacca ctaccaatag ccaacgccat cgccagcggg atagcaataa
     7381 tcccgacggt tatcccggca atcaggtcac gggtaaaccg tgcggcagta tatttttctt
     7441 tccagcaagc gtcgatcaga gcgcggaaag gcatcacatg tgaggaaaat attttgttca
     7501 caataatgtt tcatccgtga gcgcatcatc tgtcaactaa atggcaggtg aaggaggcat
     7561 aggtcataca aatggatatt acagacaaaa aaacccgccg cagcgggtct ttgagccggg
     7621 ttcgattagt gttcgaacat ggcagagatc gattcttcgt tgctgatacg acgaatcgct
     7681 tcggccagca tacctgacag ggtcagagta cgcacgttcg gcagtgattt gatttcatcg
     7741 ctcagcggaa tggtatcgca gacaacgact tcatcaatta cagagttacg caggttgttc
     7801 gccgcgttgc cagagaagat cgggtgagtc gcgtacgcaa atacacgttt agcaccacgt
     7861 tctttcagag cttcagcagc tttacacagc gtaccgccag tgtcgatcat atcatcgacc
     7921 agtacgcagt cacgacctgc aacgtcaccg atgatatgca tcacctggga aacgttcgca
     7981 cgcggacgac gtttgtcgat gattgccata tcggtatcgt tcagcagctt agcgatagcg
     8041 cgggcacgca caacgccgcc gatgtccgga gaaaccacaa ttgggttatc cagattcagc
     8101 tgcagcatgt cttccagcag gatcgggcta ccaaatacgt tatcaaccgg aacgtcgaag
     8161 aaaccctgaa tctgttcagc gtgcagatcc actgtcagca cacggtcaac accgacgctg
     8221 gagaggaagt ctgcaaccac tttcgcagtg attggtacac gagcggaacg gacgcgacgg
     8281 tcctggcgcg catagccaaa gtaggggata acagcggtga tacgacctgc ggaagcacga
     8341 cgcagggaat caaccataac gactaattcc atcaggttgt cgttagtagg ggcacaagtg
     8401 gactggatga tgaaaatatc accaccgcgt acattttcat taatttgtac gctgacttcg
     8461 ccatcgctaa agcgacctac agcggcgtcg ccgagtgaag tgtacaggcg gttggcaata
     8521 cgttgtgcta gttccggggt ggcgttacca gcaaaaagct tcatatcagg cacgagaaga
     8581 acctcaggca tgcgtccatt ggtggaaaga atctgccgaa aactgtgcgg gccaggcatg
     8641 atcctttcca ggcggtgtat taaagagcgc gatgcaacgt ctggaacaag gtgacgttgt
     8701 caccgaaact cagcttgccc ggcttaaagc atggctctgt gcaatgggga aagattaacg
     8761 cctttcgcca caaagccatt gagccattcc ggggcttgct ctagcacctg gcgggcttca
     8821 gactctgtat caaattcagc aaagacacag gcccctgtcc cagtcaggcg cgacggggcg
     8881 tattctaaca gccaggaaag caccgcatca acctcgcgaa aacgttttct tgcgataacc
     8941 tcgcaatcat tgctgaattc acattttagc aacgtttcta ttgacctttt tggcgtattg
     9001 cgcgggagtt caggatcttt aaaaatcacc ggagtcggaa tacttacacc agggtgcgcc
     9061 accagatacc acttctctgg cggatccacc ggcgttagta tttcaccaac gccttcggca
     9121 aacgcggcat gcccccgaac aaagacagga acatctgcgc ccagcgtcag ccccatttcc
     9181 gccagctcat ccatgcttag cccgcattgc cagagatgat ttaatgccac caggaccgtc
     9241 gcggcattgg atgaaccacc gccgagaccg ccgcccatcg gcaaacgctt gtcaatgctg
     9301 atattcgcac cgcttcccgt cggaagacgc ccgctgtctg ccgcagtttt catcaacaat
     9361 cgcgctgcgc gaacgatcag gttatcttca tgttccacgc cttcaacggg cgttaacaga
     9421 cgaatatccc catcgtcacg aagctcaatg ctgatggtgt cgccgtaatc aagaaactga
     9481 aacagcgttt gcagcgtgtg gtaaccatcc gcacgctgac cggtaatgta taaaaacaga
     9541 ttaagttttg ccggagaggg ccactgtgtc cgcattattt cactatccag ttatccattt
     9601 ttaacttgat gcgttgacca ccgtcggtga gttccatatt ggctggcatc gcaggatgcg
     9661 ttttggtgtc ataaccacca taaacaacct tccagttttt gccattctgg ctgtaggtaa
     9721 tttcgctcag gcggtactgg tcgtccagtt tgtagtcggt tgcatcaccc ggtaaaccta
     9781 aaatccactg gcgcaagctg ttgagcggaa ttggcattcc ggtcaatttg ccaatcatct
     9841 cttcggcgtc atcggcggta taacgctgac ctttattgtc gactaactgc acgttacccg
     9901 gttgagcatt cagctccagt tccgtgctgc ccaatgggtt agtgagcagc agacggtagc
     9961 gatcctggcc ggtttgctgc cagaaaaagc gggcgtacac tttttgttgg tcagaaatat
    10021 aagcgaacgc gccgcgagtc tgatactgat taagattgcg cacgtcttgc tgatgctgac
    10081 gccattgtgg cgaatccggg cttttgccag gacctttggg cgtggtaacg gaacaggcag
    10141 tgagcacaag agcagccagc ggtagcaggc ggataagacg aaaatcgggc aggggcatag
    10201 tgatgacaag tccttgagat acgttgcagt tataaccctt aatgctagcg ttaccgtccg
    10261 ctatcgtcta tgttcaagtt gtcttaattg ccagaatcta acggctttcg gcaattactc
    10321 caaaaggggg cgctctcttt tattgatctt acgcatcctg tatgatgcaa gcagactaac
    10381 cctatcaacg ttggtattat ttcccgcaga catgaccctt ttagcactcg gtatcaacca
    10441 taaaacggca cctgtatcgc tgcgagaacg tgtatcgttt tcgccggata agctcgatca
    10501 ggcgcttgac agcctgcttg cgcagccgat ggtgcagggc ggcgtggtgc tgtcgacgtg
    10561 caaccgcacg gaactttatc ttagcgttga agagcaggat aacctgcaag aggcgttaat
    10621 ccgctggctt tgcgattatc acaatcttaa tgaagaagat ctgcgtaaaa gcctctactg
    10681 gcatcaggat aacgacgcgg ttagccattt aatgcgtgtt gccagcggcc tggattcact
    10741 ggttcttggg gagccgcaga tcctcggtca ggttaaaaaa gcgtttgccg attcgcaaaa
    10801 aggtcatatg aaggccagcg aactggaacg catgttccag aaatctttct ctgtagcgaa
    10861 acgcgttcgc actgaaacag atatcggtgc cagtgctgtg tctgtcgctt ttgcggcttg
    10921 tacgctggcg cggcagatct ttgaatcgct ctctacggtc acagtgttgc tggtaggcgc
    10981 gggcgaaacc atcgagctgg tagcgcgtca tctgcgcgaa cataaagtac agaagatgat
    11041 tatcgccaac cgcactcgcg aacgtgccca aattctggca gatgaagttg gcgcggaagt
    11101 gattgccctg agtgagatcg acgaacgtct gcgcgaagcc gatatcatca tcagttccac
    11161 cgccagcccg ttaccgatta tcgggaaagg catggtggag cgcgcattaa aaagtcgtcg
    11221 taaccaacca atgctgttgg tggatattgc cgttccgcgc gatgttgagc cggaagttgg
    11281 caaactggcg aatgcttatc tttatagtgt ggacgatctg caaagcatca tttcgcacaa
    11341 cctggcgcag cgtaaagccg cagcggttga ggcggaaact attgtcgctc aggaaaccag
    11401 cgaatttatg gcgtggctgc gagcacaaag cgccagcgaa accattcgcg agtatcgcag
    11461 ccaggcagag cacgttcgcg atgagttaac cgccaaagcg ttagcggccc ttgagcaggg
    11521 cggcgacgcg caagccatta tgcaggatct ggcatggaaa ctgactaacc gcttgatcca
    11581 tgcgccaacg aaatcacttc aacaggccgc ccgtgacggg gataacgaac gcctgaatat
    11641 tctgcgcgac agcctcgggc tggagtagca gtacatcatt ttcttttttt acagggtgca
    11701 tttacgccta tgaagccttc tatcgttgcc aaactggaag ccctgcatga acgccatgaa
    11761 gaagttcagg cgttgctggg tgacgcgcaa actatcgccg accaggaacg ttttcgcgca
    11821 ttatcacgcg aatatgcgca gttaagtgat gtttcgcgct gttttaccga ctggcaacag
    11881 gttcaggaag atatcgaaac cgcacagatg atgctcgatg atcctgaaat gcgtgagatg
    11941 gcgcaggatg aactgcgcaa agctaaagaa aaaagcgagc aactggaaca gcaattacag
    12001 gttctgttac tgccaaaaga tcctgatgac gaacgtaacg ccttcctcga agtccgagcc
    12061 ggaaccggcg gcgacgaagc ggcgctgttc gcaggcgatc tgttccgtat gtacagccgt
    12121 tacgccgaag cccgccgctg gcgggtagaa atcatgagcg ccagcgaggg tgaacatggt
    12181 ggttataaag agatcatcgc caaaattagc ggtgatggtg tgtatggtcg tctgaaattt
    12241 gaatctggcg gtcatcgcgt gcagcgtgtt cctgctacgg aatcgcaggg tcgtattcat
    12301 acttctgctt gtaccgttgc ggtaatgcca gaactgcctg acgcagaact gccggacatc
    12361 aacccagcag atttacgcat tgatactttc cgctcgtcag gggcgggtgg tcagcacgtt
    12421 aataccaccg attcggcaat tcgtattact cacttgccga ccgggattgt tgttgaatgt
    12481 caggatgaac gttcacaaca taaaaacaaa gcgaaggcgc tttcagtgct cggtgctcgc
    12541 atccacgctg ctgaaatggc aaaacgccaa caggccgaag cgtctacccg tcgtaacctg
    12601 ctggggagtg gcgatcgcag cgaccgtaac cgtacttaca atttcccgca ggggcgcgtt
    12661 accgatcacc gcatcaacct gacgctctac cgcctggatg aagtgatgga aggtaagctg
    12721 gatatgctga ttgaaccgat tatccaggaa catcaggccg accaactggc ggcgttgtcc
    12781 gagcaggaat aatggaatat caacactggt tacgtgaagc aataagccaa cttcaggcga
    12841 gcgaaagccc gcggcgtgat gctgaaatcc tgctggagca tgttaccggc agagggcgta
    12901 cttttattct cgcctttggt gaaacgcagc tgactgacga acaatgtcag caacttgatg
    12961 cgctactgac acgtcgtcgc gatggtgaac ccattgctca tttaaccggg gtgcgagaat
    13021 tctggtcgtt gccgttattt gtttcgccag cgaccttaat tccgcgcccg gatacggagt
    13081 gtctggtgga gcaggcactg gcgcggttgc ctgaacaacc ttgccgtatt cttgatctcg
    13141 ggacgggtac cggggcgatt gcgcttgcgc tggctagcga gcgcccggac tgcgaaatta
    13201 tcgctgtaga tcgtatgcct gatgctgtct ccctggcaca acgtaatgcc cagcatctgg
    13261 cgatcaaaaa tatccacatt ctgcaaagcg actggtttag cgcgctagcc gggcagcagt
    13321 ttgcgatgat tgtcagcaat ccgccgtata ttgacgagca ggacccacat cttcaacaag
    13381 gcgatgtccg ctttgagccg ctcactgcgc tggttgcggc agacagtgga atggcagaca
    13441 tcgtgcatat catcgaacag tcgcgtaacg cgctggtatc cggcggcttt ctgcttctgg
    13501 aacatggctg gcagcagggc gaagcggtgc gacaagcatt tatcctcgcg gggtatcatg
    13561 acgtcgaaac ctgccgtgac tatggtgata acgagcgcgt aacgctcggc cgctattatc
    13621 aatgacaagt ttttctacac tgcttagtgt tcatcttatt agtatcgcgc tttctgttgg
    13681 gctattaacc ttacgtttct ggctacgtta tcagaagcat ccacaggcat ttgctcgctg
    13741 gacgcgcatt gtgccgccgg ttgtcgatac ggtgttattg ttaagcggca ttgcgttgat
    13801 ggctaaagcg cacatcctgc cattttccgg gcaggcacag tggctgactg aaaagctgtt
    13861 tggagttatc atttatatcg ttttgggttt tattgcactc gattatcgtc gtatgcacag
    13921 tcagcaggcg cgcattattg ccttcccgct ggcgttggtg gtgctgtaca tcatcattaa
    13981 actcgccacc acaaaagtac cgttactggg gtaagtcatg agatcgttag ctgatttcga
    14041 atttaataaa gcgccattgt gcgaaggcat gatcctggct tgcgaagcaa tccgccgcga
    14101 ttttccctcg caagatgttt acgacgaact ggagcgtctc gttagtctgg cgaaggaaga
    14161 aatcagccag cttctgcctt tagaagagca gctggaaaaa ctgatcgcgc tgttttacgg
    14221 cgactgggga tttaaagcct cacgcggcgt ttatcgtctt tccgatgcat tatggctgga
    14281 ccaggtgtta aagaatcgac agggcagtgc ggtatcatta ggtgcggttt tattatgggt
    14341 cgcgaatcgt ctcgatttgc cgctgctgcc ggtgattttc cctacgcagc tgatattgcg
    14401 cattgaatgt ccggatggcg aaatttggct gattaatcct tttaacggtg aatcgttaag
    14461 cgaacatatg ctggacgtat ggttaaaggg aaatatcagc ccgtcggcgg aactgtttta
    14521 tgaagacctt gatgaagctg ataacattga ggtaatccgc aaattgctgg atacactcaa
    14581 agcctcgttg atggaagaaa atcagatgga gctggcgtta cgcaccagcg aagctttatt
    14641 acaattcaac cctgaagatc cctatgaaat tcgcgatcgc gggttgattt atgcgcaact
    14701 ggattgcgaa cacgttgcgt tgaacgattt aagttatttc gttgaacagt gtccggaaga
    14761 cccgatcagc gaaatgatcc gtgcgcaaat aaataacatc gcgcataaac atattgtgct
    14821 gcattaatta atcgacattt tactcaagat taaggcgatc ctatgaaaca aaaagtggtt
    14881 agcattggcg acatcaacgt agcaaatgac ctgccgttcg tactgtttgg cggtatgaac
    14941 gtgctggaat ctcgcgatct ggcgatgcgc atttgcgagc actacgtaac tgtgacccag
    15001 aaactgggta tcccttacgt gttcaaagcc tcttttgaca aagccaaccg ctcctccatc
    15061 cactcttatc gtggaccggg cctggaagaa gggatgaaaa tcttccagga gttgaagcag
    15121 acttttggcg tgaaaattat caccgacgtt cacgaaccaa gtcaggcaca gcccgttgct
    15181 gatgtcgtgg atgtgattca gttgccggcg tttcttgctc gccagactga cctggttgaa
    15241 gccatggcga aaaccggtgc ggtaattaac gtcaagaaac cacagtttgt cagcccggga
    15301 cagatgggta atatcgttga taaattcaaa gaaggcggca acgaaaaagt gattctttgc
    15361 gatcgtggtg ctaacttcgg ctatgacaac ctggttgtcg atatgctggg cttcagcatt
    15421 atgaagaaag tgtctggtaa ctcgccggtg attttcgacg tgacccacgc actgcaatgc
    15481 cgcgatccgt ttggcgcagc ttccggtggt cgtcgtgctc aggtggctga gctggcacga
    15541 gccggtatgg cggtaggtct ggcggggctg tttattgaag cgcatccgga tccggaacat
    15601 gcgaaatgtg atggtccatc cgcgctgccg ctggctaaac tggaaccgtt cctcaagcag
    15661 atgaaagcga ttgatgatct ggtgaaaggt ttcgaagaac tggataccag caagtaatct
    15721 tttttgcttg aaaaataaag tcttagcgtt ctgcgttaag acttttttca tgggtgccag
    15781 atacaaaaaa ggccgcaggc tgtta
//
LOCUS       DADMHM010000079        15727 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.080, whole genome shotgun sequence.
ACCESSION   DADMHM010000079 DADMHM010000000
VERSION     DADMHM010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15727)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15727)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15727
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.080"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..449)
                     /locus_tag="JN125_002220"
     CDS             complement(<1..449)
                     /locus_tag="JN125_002220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1266 domain-containing protein"
                     /protein_id="HAY8871992.1"
                     /translation="MDMGSQKILFALSTPMEIRNECCLPSHSSPKMYLGTCFFDLSSS
                     WGIDDRDDLLRTIHRMIENGHAARLAGFYHRWFRYSPCEWRDYLAELNEQGQAYAQFV
                     ASTAECCGEGGIKAWDYVRMGFLSRMGVLNNWLSEEESLWIQSRIHLR"
     gene            612..1589
                     /locus_tag="JN125_002221"
     CDS             612..1589
                     /locus_tag="JN125_002221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415177.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SEL1-like repeat protein"
                     /protein_id="HAY8871993.1"
                     /translation="MIFTSSCCDNLSIDEIIERAEKGDCEAQYIVGFYYNRDSAIDSP
                     DDEKAFYWLKLAAEQGHCEAQYSLGQKYTEDKSRHKDNEHAIFWLKKTALQGHTFASN
                     ALGWILDRGEDPNYKEAVVWYQIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYK
                     QAALQGHSDAQNNLADLYEDGKGVAQNKTLAAFWYLKSAQQSNRHAQFQIAWDYNAGE
                     GVDQDYKQAMYWYLKAAAQESVGAYVNIGYMYKHGQGVEKDYQAAFEWFTKAAECNDA
                     TAWYNLAIMYHYGEGRPVDLRQALDLYRKVQSSGTRDVSQEIRETEDLL"
     gene            complement(1659..2141)
                     /locus_tag="JN125_002222"
     CDS             complement(1659..2141)
                     /locus_tag="JN125_002222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon-containing protein"
                     /protein_id="HAY8871994.1"
                     /translation="MNKVAQYYRELVASLSERLRNGERDIDALVEQARERVIKTGELT
                     RTEVDELTRAVRRDLEEFAMSYEESLKEESDSVFMRVIKESLWQELADITDKTQLEWR
                     EVFPDLNHHGVYHSGEVVGLGNLVCEKCHFHLPIYTPEVLTLCPKCGHDQFQRRPFEP
                     "
     gene            2376..4958
                     /gene="leuS"
                     /locus_tag="JN125_002223"
     CDS             2376..4958
                     /gene="leuS"
                     /locus_tag="JN125_002223"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008456064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HAY8871995.1"
                     /translation="MQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYP
                     SGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTY
                     DNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCP
                     NDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKS
                     MQRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNP
                     ELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGA
                     VMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDH
                     EAAFNAIADKLTAMGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQL
                     PVILPEDVVMDGITSPIKADPEWAKTTVNGMPALRETDTFDTFMESSWYYARYTCPEY
                     KEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQ
                     GMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSK
                     NNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTA
                     KGDVAALNVDALTEDQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAP
                     TDGEQDRALMQEALLAVVRMLNPFTPHICFTLWQELKGEGDIDNAPWPVADEKAMVED
                     STLVVVQVNGKVRAKITVPVDATEEQVRERAGQEHLVAKYLDGVTVRKVIYVPGKLLN
                     LVVG"
     gene            4973..5554
                     /gene="lptE"
                     /locus_tag="JN125_002224"
     CDS             4973..5554
                     /gene="lptE"
                     /locus_tag="JN125_002224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HAY8871996.1"
                     /translation="MRYLATLLLSLAVLITAGCGWHLRDTTQVPSTMKVMILDSGDPN
                     GPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLGKVSIAKDTASVFRNGQTAEYQMIM
                     TVNATVLIPGRDIYPISAKVFRSFFDNPQMALAKDNEQDMIVKEMYDRAAEQLIRKLP
                     SIRAADIRSDEEQTSTTTDTPATPARVSTTLGN"
     gene            5554..6585
                     /gene="holA"
                     /locus_tag="JN125_002225"
     CDS             5554..6585
                     /gene="holA"
                     /locus_tag="JN125_002225"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HAY8871997.1"
                     /translation="MIRLYPEQLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAA
                     QGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTG
                     LLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNL
                     ELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWV
                     DALLMGKSKRTLHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKH
                     RVWQNRRGMMGEALNRLSQMQLRQAVQLLTRTELTLKQDYGQLVWAELEGLSLLLCHK
                     PLADVFIDG"
     gene            6587..7228
                     /gene="nadD"
                     /locus_tag="JN125_002226"
     CDS             6587..7228
                     /gene="nadD"
                     /locus_tag="JN125_002226"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HAY8871998.1"
                     /translation="MKSLQALFGGTFDPVHYGHLNPVETLANLIGLTRVTIIPNNVPP
                     HRPQPEANSVQRKHMLELAIADKPLFTLDERELKRNAPSYTAQTLKEWRQEQGPDVPL
                     AFIIGQDSLLTFPTWYEYETILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHNQED
                     LHLQPAGKIYLAETPWFNISATIIRERLQNGESCEDLLPEPVLTYINQQGLYR"
     gene            7252..7862
                     /locus_tag="JN125_002227"
                     /pseudo
     CDS             7252..7862
                     /locus_tag="JN125_002227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415171.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobalamin/alpha-ribazole phosphatase"
     gene            8122..8439
                     /gene="rsfS"
                     /locus_tag="JN125_002228"
                     /gene_synonym="rsfA"
     CDS             8122..8439
                     /gene="rsfS"
                     /locus_tag="JN125_002228"
                     /gene_synonym="rsfA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308702.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HAY8871999.1"
                     /translation="MQGKALQDFVIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTS
                     SRHVMSIADHVVQESRAAGLLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEK
                     LWS"
     gene            8443..8910
                     /gene="rlmH"
                     /locus_tag="JN125_002229"
     CDS             8443..8910
                     /gene="rlmH"
                     /locus_tag="JN125_002229"
                     /EC_number="2.1.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010618862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HAY8872000.1"
                     /translation="MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRG
                     KNADIKRILDKEGEQMLAAAGKNRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLI
                     GGPEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYHRE"
     gene            8941..10842
                     /gene="mrdA"
                     /locus_tag="JN125_002230"
     CDS             8941..10842
                     /gene="mrdA"
                     /locus_tag="JN125_002230"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-transpeptidase MrdA"
                     /protein_id="HAY8872001.1"
                     /translation="MKLQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYNLQI
                     VRFTDYQTRSNENRIKLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTL
                     DALRSVVDLTDDDIAAFRKERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKG
                     YKRRYYPYGSALTHVIGYVSKINDKDVERLNNDGKLANYAATHDIGKLGIERYYEDVL
                     HGQTGYEEVEVNNRGRVIRQLKEVPPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVT
                     DPRTGGVLALVSTPSYDPNLFVDGISSKDYSALLNDPNTPLVNRATQGVYPPASTVKP
                     YVAVSALSAGVITRNTTLFDPGWWQLPGSEKRYRDWKKWGHGRLNVTRSLEESADTFF
                     YQVAYDMGIDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIP
                     VGIGQGYWTATPIQMSKALMILINDGIVKVPHLLMSTAEDGKQVPWVQPHEPPVGDIH
                     SGYWELAKDGMYGVANRPNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAE
                     RLRDHKLMTAFAPYNNPQVAVAIILENGGAGPAVGTLMRQILDHIMLGDNNTDLPAEN
                     PAVAAAEDH"
     gene            10845..11957
                     /gene="mrdB"
                     /locus_tag="JN125_002231"
                     /gene_synonym="rodA"
     CDS             10845..11957
                     /gene="mrdB"
                     /locus_tag="JN125_002231"
                     /gene_synonym="rodA"
                     /EC_number="2.4.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004885876.1"
                     /note="rod shape-determining protein RodA; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan glycosyltransferase MrdB"
                     /protein_id="HAY8872002.1"
                     /translation="MTDNPNKKTFWDKVHLDPTMLLILLALLVYSALVIWSASGQDIG
                     MMERKIGQIAMGLVIMVVMAQIPPRVYEGWAPYLYIICIILLVAVDAFGAISKGAQRW
                     LDLGIVRFQPSEIAKIAVPLMVARFINRDVCPPSLKNTGIALVLIFMPTLLVAAQPDL
                     GTSILVALSGLFVLFLSGLSWRLIGVAVVLVAAFIPILWFFLMHDYQRQRVMMLLDPE
                     SDPLGAGYHIIQSKIAIGSGGLRGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVG
                     ILILLALYILLIMRGLWIAARAQTTFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGV
                     PLPLVSYGGSALIVLMAGFGIVMSIHTHRKMLSKSV"
     gene            11968..13056
                     /gene="rlpA"
                     /locus_tag="JN125_002232"
     CDS             11968..13056
                     /gene="rlpA"
                     /locus_tag="JN125_002232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic peptidoglycan transglycosylase RlpA"
                     /protein_id="HAY8872003.1"
                     /translation="MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEIS
                     GADPRFEPLNATANQDYQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEAFD
                     PTQLTAAHPTLPLPSYARITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSN
                     NTKVRIDPIIVAQDGSLSGPGMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILP
                     VSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVLEGSEPTPAPQPVVTAPSTTPATSPA
                     MVTPQAASQSASGNFMVQVGAVSDQARAQQYQQQLGQKFGVPGRVTQNGAVWRIQLGP
                     FASKAEASTLQQRLQTEAQLQSFITTAQ"
     gene            13196..14407
                     /gene="dacA"
                     /locus_tag="JN125_002233"
     CDS             13196..14407
                     /gene="dacA"
                     /locus_tag="JN125_002233"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase DacA"
                     /protein_id="HAY8872004.1"
                     /translation="MNTIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPSVPQI
                     DAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQTMKAGKFKETDLVTIGN
                     DAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVG
                     LMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFT
                     FNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKG
                     REAESKKLLTWGFRFFETVNPLKVGKEFASEPVWFGDSDRASLGVDKDMYLTIPRGRM
                     KDLKASYVLNSSELHAPLQKNQVVGTINFQLDGKTIEQRPLVVLQEIPEGNFFGKIID
                     YIKLMFHHWFG"
     gene            14518..14781
                     /locus_tag="JN125_002234"
     CDS             14518..14781
                     /locus_tag="JN125_002234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbeD family protein"
                     /protein_id="HAY8872005.1"
                     /translation="MKTKLNELLEFPTPFTYKVMGQALPELVDQVVEVVQRHAPGDYT
                     PTVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMVL"
     gene            14882..15523
                     /gene="lipB"
                     /locus_tag="JN125_002235"
     CDS             14882..15523
                     /gene="lipB"
                     /locus_tag="JN125_002235"
                     /EC_number="2.3.1.181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415163.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl(octanoyl) transferase LipB"
                     /protein_id="HAY8872006.1"
                     /translation="MYQDKILVRQLGLQPYEPISQAMHEFTDTRDDSTLDEIWLVEHY
                     PVFTQGQAGKAEHILMPGDIPVIQSDRGGQVTYHGPGQQVMYVLLNLKRRKLGVRELV
                     TLLEQTVVNTLAELGIEAHPRADAPGVYVGEKKICSLGLRIRRGCSFHGLALNVNMDL
                     SPFLRINPCGYAGMEMAKISQWKPEATTNNIAPRLLENILALLNNPDFEYITA"
BASE COUNT         3935 a         3968 c         4055 g         3769 t
ORIGIN      
        1 cgtagatgaa tacgcgactg gatccataga ctttcttctt cactcaacca gttattaagt
       61 acgcccattc gacttaaaaa acccatccgg acataatccc atgctttaat tcctccctca
      121 ccacagcatt cggctgtgct ggcgacaaat tgcgcataag cctgaccttg ctcatttaat
      181 tcagcaagat agtcacgcca ttcacatgga gaataacgaa accagcggtg ataaaaccct
      241 gccaaccgag cggcatgacc gttctcgatc attcggtgaa ttgtgcgtag caggtcatca
      301 cggtcatcaa ttccccatga ggaagaaagg tcaaaaaagc atgtacctaa atacattttg
      361 ggggatgaat gcgaaggtaa acagcattca ttgcgtattt ccatcggagt ggaaagtgca
      421 aacaatattt tttgcgaccc catgtccata taatttatcc ttaaacattc atttaatgaa
      481 tgtaaactac atttcgagac tcagttattt atacttttct gacgcgacat aatacgcata
      541 aaataaggct tacgcaaaaa tggaacacat aaaatataat atgttttatc tacaaccata
      601 aggaaatgat aatgattttt acgtcaagtt gctgcgataa tttatcaata gatgagatta
      661 tcgaacgtgc tgaaaaaggc gattgcgagg ctcaatatat tgttgggttt tattataatc
      721 gcgatagcgc aattgactct ccggacgacg aaaaggcctt ttactggctg aagctggccg
      781 ccgagcaagg tcattgtgaa gcacaatatt ccttaggaca aaagtatact gaggataaaa
      841 gccgtcataa agataatgag catgccatct tttggctgaa aaaaactgcc ctacaaggcc
      901 atactttcgc ttccaacgcc cttggctgga tactggatcg tggagaagac cccaattata
      961 aagaagcggt tgtctggtat cagatagccg cggagagcgg aatgtcttat gcgcaaaata
     1021 atcttgggtg gatgtacaga aatggcaacg gagtcgcaaa agactatgcg ctggcatttt
     1081 tctggtacaa acaagctgca ttacaaggcc atagtgacgc gcaaaacaat ctggccgatc
     1141 tttatgaaga cggaaaaggc gttgctcaaa acaagacact cgccgcattc tggtatttga
     1201 aaagcgcaca gcagagtaat cggcacgccc agtttcaaat tgcatgggat tataacgctg
     1261 gcgaaggggt ggaccaggac tataagcaag cgatgtactg gtatctgaag gctgccgctc
     1321 aggaaagcgt cggcgcttac gtcaacatcg gttatatgta taaacacgga caaggcgttg
     1381 agaaagatta tcaggctgcc tttgaatggt ttacgaaagc cgctgaatgc aatgacgcca
     1441 ctgcctggta taacctggcc attatgtatc actacggaga aggaagacct gtcgatctcc
     1501 gacaggctct cgacctgtat cgtaaagttc agtcatccgg aaccagagat gtcagtcagg
     1561 aaattcgtga gactgaagat ttactgtaga gataaaaaca agggccgggg aatttcattc
     1621 ggcccatatt ctctttattg ctgtgcgaaa tcagactatt acggctcaaa cgggcgtctc
     1681 tggaactggt catgaccaca tttcgggcat agcgtcagca cttccggtgt gtagatcggg
     1741 agatggaagt gacatttctc gcagaccaga tttcccagcc cgaccacttc tccgctgtga
     1801 taaaccccat gatgattgag gtccgggaaa acttcgcgcc attcaagctg cgttttatcg
     1861 gtgatatctg ccagctcctg ccataagctt tctttaatca cccgcataaa gacgctgtca
     1921 gattcttctt tcaggctctc ttcatagctc atggcgaact cttccaggtc acgtcttaca
     1981 gctcgcgtca gctcatcgac ctcggttcgc gttaactccc ctgtttttat tacgcgctcg
     2041 cgcgcctgtt ccaccagtgc gtcgatatca cgttcgccat tgcgcaggcg ttcgctcagt
     2101 gacgcgacca gttcacggta atattgagca accttgttca tcgtttcatc tcccgggtcg
     2161 ttaactgact ataataatag acgttctttg ttccttgctt tgctaatacg cccacaaact
     2221 ctgtaaatta atgtatgaat aatccgggca tcatttcaac gtcgagtgcg cgaaaggctg
     2281 ttttgacgcg gacgtttggg ctatgctatg cggatctgaa aaaccacctc aacgctacat
     2341 ttgtagccgt attgaaaaca ggaccactgg ctgccatgca agagcaatac cgcccggaag
     2401 agatagaatc caaagtacag cttcattggg atgagaagcg cacatttgaa gtaaccgaag
     2461 acgagagcaa agagaagtat tactgcctgt ctatgcttcc ctatccttct ggtcgactac
     2521 acatgggcca cgtacgtaac tacaccatcg gtgacgtgat cgcccgctac cagcgtatgc
     2581 tgggcaaaaa cgtcctgcag ccgatcggct gggacgcgtt tggtctgcct gcggaaggcg
     2641 cggcggtgaa aaacaacacc gctccggcac cgtggacgta cgacaacatc gcgtatatga
     2701 aaaaccagct caaaatgctg ggctttggtt atgactggag ccgcgagctg gcaacctgta
     2761 cgccggaata ctaccgttgg gaacagaaat tcttcaccga gctgtataaa aaaggcctgg
     2821 tatataagaa gacttctgcg gtcaactggt gcccgaacga ccagaccgta ctggcgaacg
     2881 aacaagttat cgacggctgc tgctggcgct gcgataccaa agttgaacgt aaagagatcc
     2941 cgcagtggtt tatcaaaatc actgcttacg ctgacgagct gctcaacgat ctggataaac
     3001 tggatcactg gccagacacc gttaaaagca tgcagcgtaa ctggatcggt cgttccgaag
     3061 gagtggagat caccttcaac gttaacgact atgacaacac gctgaccgtt tacactaccc
     3121 gcccggacac ctttatgggt tgtacctact tggcggtagc tgcgggtcat ccgctggcgc
     3181 agaaagcggc ggaaaataat cctgaactgg cggcctttat tgacgaatgc cgtaacacca
     3241 aagttgccga agctgaaatg gcgacgatgg agaaaaaagg cgtcgatact ggctttaaag
     3301 ctgttcaccc attaacgggc gaagaaattc ccgtttgggc agcaaacttc gtattgatgg
     3361 agtacggcac gggcgcagtt atggcggttc cgggtcacga ccagcgcgac tacgagtttg
     3421 cctctaaata cggcctgaac atcaaaccag ttatcctggc tgctgacggc tctgagccag
     3481 atctttctca gcaagccctg actgaaaaag gcgtgctgtt caactctggc gaattcaacg
     3541 gtcttgacca tgaagcggcc ttcaacgcca tcgccgataa actgactgcg atgggcgttg
     3601 gcgagcgtaa agtgaactac cgcctgcgcg actggggtgt ttctcgtcag cgttactggg
     3661 gcgcgccgat tccgatggtg acgctggaag acggtaccgt aatgccgacc ccggacgacc
     3721 agctgccggt gatcctgccg gaagatgtgg tgatggacgg cattaccagc ccgattaaag
     3781 cagatccgga gtgggcaaaa actaccgtta acggtatgcc agcgctgcgt gaaaccgaca
     3841 ctttcgacac ctttatggag tcctcctggt actatgcgcg ctacacttgc ccagagtaca
     3901 aagaaggtat gctggattcc gaagcggcta actactggct gccggtggat atctacattg
     3961 gtggtatcga acacgccatt atgcacctgc tctacttccg cttcttccac aaactgatgc
     4021 gtgatgcagg catggtgaac tctgacgaac cagcgaaaca gttgctgtgt cagggtatgg
     4081 tgctggcaga tgccttctac tatgttggcg aaaacggcga acgtaactgg gtttccccgg
     4141 ttgatgctat cgttgaacgt gacgagaaag gccgtatcgt gaaagcgaaa gatgcggcag
     4201 gccatgaact ggtttatacc ggcatgagca aaatgtccaa gtcgaagaac aacggtatcg
     4261 acccacaggt gatggttgaa cgttacggcg cggacaccgt tcgtctgttt atgatgtttg
     4321 cttctccggc tgatatgact ctagaatggc aggaatccgg tgtggaaggg gctaaccgct
     4381 tcctgaaacg tgtctggaaa ctggtttacg agcacacagc aaaaggtgat gttgcggcac
     4441 tgaacgttga tgcgctgact gaagatcaga aagcgctgcg tcgcgatgtg cataaaacga
     4501 tcgctaaagt gaccgatgat atcggccgtc gtcagacctt caacaccgca attgcggcga
     4561 ttatggagct gatgaacaaa ctggcgaaag caccaaccga tggcgagcag gatcgcgctc
     4621 tgatgcagga agcgctgctg gccgttgtcc gtatgcttaa cccgttcacc ccgcacatct
     4681 gcttcacgct gtggcaggaa ctgaaaggcg aaggcgatat cgacaacgcg ccgtggccgg
     4741 ttgctgacga aaaagcgatg gtggaagact ccacgctggt cgtggtgcag gttaacggta
     4801 aagtccgtgc caaaatcacc gttccggtgg acgcaacgga agaacaggtt cgcgaacgtg
     4861 ctggccagga acatctggta gcaaaatatc ttgatggcgt taccgtgcgt aaagtgattt
     4921 acgtaccagg taaactcctc aatctggtcg ttggctaagc gcgggaggaa gcgtgcgata
     4981 tctggcaaca ttgttgttat ctctggcggt gttaatcacc gccgggtgtg gctggcatct
     5041 gcgtgatacc acgcaggttc cttccactat gaaggtcatg atcctggact caggcgatcc
     5101 gaacgggcca ttaagccgtg cggtgcgtaa ccagttacgt ctgaatggtg tcgagttgct
     5161 tgataaagaa accacgcgta aggacgttcc atccctgcgt ttgggtaaag tgagcatcgc
     5221 gaaagatacc gcatcggtat tccgtaacgg tcaaacagca gagtatcaga tgatcatgac
     5281 ggtgaatgcg accgtgttga tccccggccg tgatatctac ccgattagcg ccaaagtctt
     5341 ccgttcgttc tttgataacc cgcaaatggc gttagcgaaa gataacgaac aagacatgat
     5401 cgtaaaagag atgtacgacc gtgctgccga acagctgatt cgtaagctgc caagcatccg
     5461 tgctgcggat attcgttccg acgaagaaca gacgtcgacc acaacggata ctccggcaac
     5521 gcctgcacgc gtctccacca cgctgggtaa ctgatgattc ggttgtaccc ggaacaactc
     5581 cgcgcgcagc tcaatgaagg gctgcgcgcg gcgtatcttt tacttggtaa cgatcctctg
     5641 ttattgcagg aaagccagga cgctgttcgt caggtagctg cggcacaagg attcgaagaa
     5701 caccacactt tttccattga tcccaacact gactggaatg cgatcttttc gttatgccag
     5761 gctatgagtc tgtttgccag tcgacaaacg ctattgctgt tgttaccaga aaacggaccg
     5821 aatgcggcga tcaatgaaca acttctcaca ctcaccggac ttctgcatga cgacctgctg
     5881 ttgatcgtcc gcggtaataa attaagcaaa gcgcaagaaa atgccgcctg gtttactgca
     5941 cttgcgaatc gcagcgtgca ggtgacctgt cagacaccgg agcaggctca gcttccccgc
     6001 tgggttgctg cgcgcgcaaa acagctcaac ttagaactgg atgacgcggc aaatcaggtg
     6061 ctctgctact gttatgaagg taacctgctg gcgctggctc aggcactgga gcgtttatcg
     6121 ctgctctggc cagacggcaa attgacatta ccgcgcgttg aacaggcggt gaatgatgcc
     6181 gcgcatttca ccccttttca ttgggttgat gctttgttga tgggaaaaag taagcgcaca
     6241 ttgcatattc ttcagcaact gcgtctggaa ggcagcgaac cggttatttt gttgcgcaca
     6301 ttacaacgtg aactgttgtt actggttaac ctgaaacgcc agtctgccca tacgccactg
     6361 cgtgcgttgt ttgataagca tcgggtatgg cagaaccgcc ggggcatgat gggcgaggcg
     6421 ttaaatcgct taagtcagat gcagttacgt caggccgtgc aactcctgac acgaacggaa
     6481 ctcaccctca aacaagatta cggtcagtta gtgtgggcag agctggaagg gttatctctt
     6541 ctgttgtgcc ataaacccct ggcggacgta tttatcgacg gttgatatga aatctttaca
     6601 ggctctgttt ggcggcacct ttgatccggt gcactatggt catctaaacc ccgtggaaac
     6661 gctggcgaat ttgattggtc tgacgcgggt cacaatcatc cctaataatg ttcctccgca
     6721 tcgtccccag ccggaagcga acagcgtgca gcgtaaacac atgcttgaac tggcgattgc
     6781 cgacaagcca ttatttactc ttgatgaacg cgagctaaag cgcaatgccc cctcttacac
     6841 tgcgcaaaca ctgaaagagt ggcggcagga acaaggaccg gacgtgccgc tggcgtttat
     6901 tattggtcag gattcactgc tgacctttcc gacctggtac gaatacgaaa cgatactcga
     6961 caatgcacat ttgatcgtct gtcggcgtcc aggttaccca cttgaaatgg cgcaaccgca
     7021 ataccagcaa tggctggaag atcatttgac acataaccag gaagatcttc accttcagcc
     7081 tgccggtaaa atttatctgg ctgaaacgcc gtggtttaac atctcggcga ccatcatccg
     7141 cgaacgtttg caaaacggtg aatcgtgtga ggatttattg ccggaaccgg tactgactta
     7201 cattaaccaa caaggcttgt atcgctgata cctgtcgtta cggagggcat gatgcgactg
     7261 tggttaattc gtcatggtga aacgcaagcg aatatcgatg gtctttacag cggtcatgcg
     7321 ccccccccct gaccgcgcgc ggtattgagc aagcgcaaaa tctgcatacg ctgctacatg
     7381 gtgtttcctt tgatctggtt ttatgcagtg aactggaacg ggcacagcat accgcgcgac
     7441 tggttctcag tgaccgccag ctccccgtgc aaatcatccc tgaactcaac gaaatgtttt
     7501 ttggcgactg ggagatgcga catcatcgcg acctcatgca agaagatgcc gaaaactata
     7561 gcgcgtggtg caatgactgg cagcatgcaa tccccacgaa cggtgaagga tttcaggcat
     7621 tttcgcaacg tgtggaacgc tttatcgcaa ggcttagtga atttcagcac tatcagaata
     7681 ttttagtcgt cagccatcag ggtgtactga gtctgttaat cgcccgttta attggcatgc
     7741 ctgccgaggc tatgtggcat tttcgcgttg actaggggtg ttggagcgcc attgatatca
     7801 accaaaaatt cgcgacgcta cgcgtcctca atagccgtgc catcggggtc gataatgcat
     7861 gacttttctg tttttttacg ggtaagccgc aacgaccatt gacagacccg ggcaggctga
     7921 tattctccgc agccagactt ttttcgccag acacgacttt gtagaaattg ttttacaaaa
     7981 atggcgatgc aatctgcggc gcggggtggg atgatagccc actttcgaaa gccgattcgg
     8041 cgacaattgt cccgaaatcg cctctggttc aggtatactg acagaccatt tttatctatt
     8101 tgattcaccc agggggaaaa cttgcagggt aaagcactcc aggattttgt tatcgacaaa
     8161 attgatgacc tcaaaggtca ggacatcatc gccttagacg ttcaaggcaa atccagcatc
     8221 accgactgca tgatcatctg tacgggtacg tccagccgtc atgttatgtc cattgctgac
     8281 cacgttgtgc aggagtctcg cgcagcgggc ctgttaccgc tcggcgtaga aggtgaaaac
     8341 agcgccgact ggattgtcgt ggatttgggc gatgtgattg tccatgtcat gcaggaagag
     8401 agccgtcgcc tgtatgaact ggaaaaactc tggagttaat gcgtgaagct gcaacttgtc
     8461 gccgtgggaa cgaaaatgcc ggactgggta caaaccggtt ttaccgagta cctgcgtcgt
     8521 tttccgaaag atatgccctt cgagctgatt gaaattccgg ccggaaaacg cggcaagaat
     8581 gcggacatca agcgcatact cgacaaagag ggtgagcaga tgttggcggc cgcaggcaaa
     8641 aaccgcattg tcaccctcga tattccaggc aagccctggg atacgccgca gttagccgct
     8701 gagctggaac gctggaagct ggatggtcgc gacgtcagtc tactgattgg cgggcctgaa
     8761 gggttgtcgc ctgcctgtaa agcggcggcg gagcagagct ggtcgctgtc ggcgcttacc
     8821 ctcccccatc cgctggttcg cgtgctggtc gcagagagtc tgtaccgggc gtggagcatc
     8881 accaccaacc atccttatca ccgtgagtga taagggagct ttgagtagaa aacgcagcgg
     8941 atgaaactac agaactcttt tcgcgactat acggcagagt ccgcgctgtt tgtgcgccgg
     9001 gcgctggtcg cctttttggg gattttgctg ctgaccggcg tgcttatcgc caacctgtat
     9061 aatctgcaaa ttgttcgctt taccgactac cagacccgct ctaatgaaaa ccgcattaag
     9121 ctggtgccta tcgcgcccag ccgcggcatt atttacgacc gtaatggtat ccctctggcc
     9181 ctcaaccgca ctatctacca gatagaaatg atgccagaga aagtcgataa cgtgcagcaa
     9241 acgctggacg ctttgcgcag cgtggttgat ctgaccgatg acgatattgc tgcattccga
     9301 aaagagcgcg cacgttcaca ccgtttcacc tctattcccg tgaaaactaa cctgaccgaa
     9361 gtacaagtag ctcgctttgc cgtcaatcag taccgttttc cgggggttga agttaaaggc
     9421 tataaacgtc gttactatcc ttacggttcg gcgttgaccc acgtcatcgg ctatgtgtcg
     9481 aaaatcaacg ataaagacgt cgaacgcctg aataatgacg gcaaactggc caactatgcg
     9541 gcaacgcatg atatcggtaa gctgggcatt gagcgttact atgaagacgt gctgcacggt
     9601 cagaccggtt atgaagaggt tgaagttaac aaccgtgggc gtgttatccg ccagttaaaa
     9661 gaagtaccac cgcaagccgg acacgatatt tacctgacgc tggatctcaa actccagcaa
     9721 tatattgaaa cgctgctggc gggtagccgc gcagctgtgg tagtcaccga tccgcgtaca
     9781 ggtggggtgc tggcgctggt ttccacgcct agttatgacc caaacttgtt tgttgacggt
     9841 atctccagca aagattattc cgccttgttg aacgacccga atacaccgct ggtgaaccgc
     9901 gccacacagg gggtttatcc tcccgcgtct acagttaaac cctatgtggc ggtttcggca
     9961 ttgagcgccg gggtgatcac gcgcaatacg acgctgtttg acccaggctg gtggcaactg
    10021 ccaggttcgg aaaaacgtta tcgtgactgg aaaaaatggg gccacgggcg tctgaatgtc
    10081 acaagatcgc tggaagaatc tgcggatacc ttcttctatc aggtggccta cgatatgggg
    10141 atcgatcgcc tctccgaatg gatgggtaaa ttcggttatg gtcattacac cggtatcgac
    10201 ctggcggaag aacgttccgg caacatgcct acccgcgaat ggaaacagaa acgctttaaa
    10261 aaaccgtggt atcagggtga caccattccg gttggtatcg gtcagggtta ctggacagcg
    10321 accccaatcc agatgagtaa ggcactgatg atcctgatta atgacggtat cgtgaaggtt
    10381 ccgcatttgc tgatgagcac cgccgaagac ggcaaacagg tgccatgggt acaaccgcat
    10441 gaaccgcccg tcggcgatat tcattccggt tactgggagc tggcgaaaga cggtatgtac
    10501 ggtgttgcta accgccctaa cggtacggcg cataaatact ttgccagcgc accgtacaaa
    10561 attgcggcga aatctggtac cgctcaggtc ttcggtctga aagcgaacga aacctataat
    10621 gcgcacaaaa ttgccgagcg tttacgtgac cacaaactga tgaccgcctt tgcgccatac
    10681 aacaatccgc aagtggctgt cgccattatt ctggagaacg gcggcgcggg tccggcggtt
    10741 ggtacgctga tgcgtcagat cctcgaccac attatgctgg gtgataacaa caccgatctg
    10801 cctgcggaaa atccagcggt tgccgcagcg gaggaccatt aatcatgacg gataatccga
    10861 ataaaaaaac attctgggat aaagtccatc tcgatcccac aatgctgctg atcttactgg
    10921 cattgctggt ttacagcgcc ctggttatct ggagcgccag cggtcaggat attggcatga
    10981 tggagcgtaa aatcggccaa atcgcaatgg gtctggtcat catggtggtg atggcgcaaa
    11041 ttcctccacg cgtttatgaa ggctgggccc cctatctcta tatcatctgt attattttgc
    11101 tggtggcggt agatgctttc ggtgccatct ctaaaggtgc tcaacgctgg ctggacctcg
    11161 gtattgttcg ttttcagccg tcggaaattg ccaaaatagc cgtaccactg atggttgcgc
    11221 gctttatcaa ccgcgatgtt tgcccaccgt cgttgaagaa cacaggcatc gcgctggtgc
    11281 tgatatttat gcccacgctg ctggtggctg cacagcctga cctgggaaca tcaatcctcg
    11341 ttgcgctttc cggtctgttt gtactgttcc tctctggcct tagctggcgt ctgattggcg
    11401 tcgcagtagt gctggtggcg gcgttcattc ctattctgtg gttcttcctg atgcatgatt
    11461 accagcgcca gcgcgtaatg atgctcctgg acccggaatc agacccactc ggcgcgggct
    11521 atcacattat tcagtctaaa attgctattg gctccggcgg attacgcggc aaaggctggc
    11581 tgcatggcac tcagtcacaa cttgaatttc tacccgaacg ccataccgac tttatcttcg
    11641 cggtactggc ggaagagctg ggattagtgg gcattttgat tctgctcgct ctctacattc
    11701 tgctgatcat gcgcgggctg tggatagccg ccagagcgca aaccaccttt ggtcgcgtca
    11761 tggctggcgg cttaatgctg atattattcg tttatgtctt cgtaaatatt ggtatggtaa
    11821 gcggtattct gccggttgta ggggttccgc tcccactggt cagttatgga ggatcagcgc
    11881 taattgtgct gatggctggg ttcgggattg taatgtcaat ccacacccac aggaaaatgt
    11941 tgtcgaaaag cgtgtaagag gtgcgcaatg cgtaagcagt ggctcgggat ctgcatcgcg
    12001 gcaggaatgc tcgcggcatg tacaagcgat gatggtcagc aacagacggt aagtgtaccg
    12061 cagcctgcgg tatgtaacgg ccccatagtt gaaattagcg gggcggaccc gcgtttcgaa
    12121 ccactgaacg cgacggcaaa tcaggattac cagcgcgacg gtaaaagcta caaaatcgtg
    12181 caggatccgt ctcgatttag ccaggcggga ctggcggcaa tctatgatgc cgaaccaggc
    12241 agtaacctga cggcctctgg cgaagctttc gatccgacac agctgacggc ggcccatcca
    12301 acgcttccgc tccccagcta cgccagaatc actaacctgg ctaacgggcg aatgatcgtg
    12361 gtgcgcatta atgatcgcgg cccttacggc aacgaccgcg ttatttcgct ttctcgcgcg
    12421 gcagctgacc gtcttaacac gtcaaacaac accaaagttc gtatcgatcc gattattgtc
    12481 gcccaggatg gttcgctttc tggtcctggt atggcttgta ccacagtcgc caaacagact
    12541 tacgccctgc ctgcacctcc cgatttaagt ggtggcgcgg gaacaagttc agtgtctggc
    12601 ccgcagggtg acattcttcc ggtcagtaat tcgacgctaa aaagcgaaga tccgaccggc
    12661 gcgccggtaa ccagtagcgg tttcctcggc gcaccaacga ccttagcgcc tggtgtactg
    12721 gaaggcagcg aaccgacgcc tgcgccacag cccgttgtta cagctccgtc gacaacgcct
    12781 gcaacctcgc ctgcaatggt gacaccgcaa gccgcctcgc aaagcgccag cggcaacttt
    12841 atggtgcaag tcggggccgt tagcgatcag gctcgtgcgc aacagtacca acagcaactg
    12901 ggacagaagt tcggcgtccc cggtcgcgta actcaaaatg gcgcggtctg gcggatccag
    12961 cttggcccct tcgccagcaa agccgaagcc agtaccttgc agcaacgttt gcaaaccgaa
    13021 gcccaattac agtcatttat taccaccgcg cagtagcgta aagcaggcat ctgatgtgtc
    13081 aatttctgta aatgacgtta acaaagtcac gcggaaagtc agatgcctgc cggtagtgca
    13141 tttgctatag tagggcactt tttttaattc catcacggat gtcgtagttc agaccatgaa
    13201 taccattttt tccgctcgta tcatgaagcg cctggcgctc accacggctc tttgcacagc
    13261 ctttatctct gctgcacatg ccgatgacct gaatatcaaa actatgatcc cgagtgtacc
    13321 gcagatcgat gcggagtcct acatcctgat tgactataac tccggcaaag tgctcgccga
    13381 acagaacgca gatgtccgcc gcgatcctgc cagcctgacc aaaatgatga ccagttacgt
    13441 tatcggccaa acaatgaaag ccggtaaatt taaagaaact gatttagtca ctatcggcaa
    13501 cgacgcatgg gccaccggta acccggtgtt taaaggttct tcgctgatgt tcctcaaacc
    13561 gggcatgcag gttccggttt ctcagctgat ccgcggtatt aacctgcaat cgggtaacga
    13621 tgcttgtgtc gccatggctg attttgccgc tggtagccag gacgcttttg ttggcttgat
    13681 gaacagctac gttaacgccc tgggcctgaa aaacacccac ttccagacgg tacatggtct
    13741 ggatgctgat ggtcagtaca gctccgcgcg cgatatggcg ctgatcggcc aggcgttgat
    13801 ccgtgacgta ccgaatgaat actcgatcta taaagaaaaa gaatttacgt ttaacggtat
    13861 tcgccagctg aaccgtaacg gcctgttatg ggataacagc ctgaatgtcg acggcatcaa
    13921 aaccggacac actgacaaag caggttacaa ccttgttgct tctgcgactg aaggccagat
    13981 gcgcttgatc tctgcggtga tgggcggacg tacttttaaa ggccgtgaag ccgaaagtaa
    14041 aaaactgctg acctggggct tccgtttctt cgaaaccgtt aacccactga aagtaggtaa
    14101 agagttcgcc tctgaaccgg tttggtttgg tgattctgat cgcgcttcgt taggggttga
    14161 taaagacatg tacctgacca ttccgcgtgg tcgcatgaaa gatctgaaag ccagctatgt
    14221 gctgaacagc agtgaattgc atgcgccgct gcaaaagaat caggtcgtcg gaactatcaa
    14281 cttccagctt gatggcaaaa cgatcgagca acgcccgctg gttgtgttgc aagaaatccc
    14341 ggaaggtaac ttcttcggca aaatcattga ttacattaaa ttaatgttcc atcactggtt
    14401 tggttaaaaa ttgaacactt gaaagtgtaa tttccgtccc catatactaa gcatcagtaa
    14461 aaaaactccc gccttctggc gggagttgct atttaattac gttacgccgg agctgacatg
    14521 aaaaccaaac ttaacgaact gcttgaattc cctactcctt ttacttacaa agttatgggg
    14581 caggcgttac ctgagctggt tgatcaggtg gttgaagtgg tacagcgcca tgcgccaggt
    14641 gactacaccc caacggtaaa accaagcagc aaaggcaact accactcggt atctatcact
    14701 atcaacgcca ctcatatcga gcaggttgaa acactgtatg aagaactggg caaaatcgat
    14761 attgtccgca tggttctgta actcgcttct ccgttacccg gctcctggtc gggtaactcc
    14821 cctctcctcg ctgtgatata cttttccccc acttttactc attctccacg gagatgccgt
    14881 tttgtatcag gataaaattc ttgtccgcca gctcggtctt cagccttacg agccaatctc
    14941 ccaggctatg catgaattca ccgatacccg cgatgatagt acccttgatg aaatctggct
    15001 ggtcgagcac tatccggtat tcacccaagg tcaggcagga aaagcggagc acattttaat
    15061 gccgggtgat attccggtga tccagagcga tcgcggtggg caggtgactt atcacgggcc
    15121 gggacaacag gtgatgtatg tgttgcttaa cctgaaacgc cgtaaactcg gtgtgcgtga
    15181 actggtgacc ttgcttgagc aaacagtggt gaataccctg gctgaactgg gtatagaagc
    15241 gcatcctcgg gctgacgcgc ctggtgtcta tgtcggggaa aagaaaattt gctcactggg
    15301 tttacgaatt cgacgcggtt gttcattcca cggtctggca ttaaacgtca atatggatct
    15361 ttcaccattt ttacgtatta atccttgtgg gtatgccgga atggaaatgg ctaaaatatc
    15421 acaatggaaa cccgaagcga cgactaataa tattgctcca cgtttactgg aaaatatttt
    15481 agcgctacta aacaatccgg acttcgaata tattaccgct taattccata catcaatggc
    15541 ccaatttaca ctgggtcatt actcataata cctgctaatg ctttacatct ccttcgcgtt
    15601 tgtatatttt ctttatcact tgcagaaatg cggtgccacg ccttgctccg taactcagcc
    15661 cattgattaa cctattgaaa tagttgatta tggtgagcaa aagcgttccg ttccaattag
    15721 acataag
//
LOCUS       DADMHM010000080        15711 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.081, whole genome shotgun sequence.
ACCESSION   DADMHM010000080 DADMHM010000000
VERSION     DADMHM010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15711)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15711)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15711
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.081"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..731
                     /gene="rihB"
                     /locus_tag="JN125_002236"
     CDS             <1..731
                     /gene="rihB"
                     /locus_tag="JN125_002236"
                     /EC_number="3.2.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ribosylpyrimidine nucleosidase"
                     /protein_id="HAY8872007.1"
                     /translation="MRKQIVADNIHGETGLDGPVFESLTRQAESTHAVKYIIDTLMAS
                     DGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYGTGNFTPSAEFNIFADPEA
                     ARVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERAGGPAGELFSDIMNFTLKTQFENY
                     GLAGGPVHDATCIGYLINPDGIKTQEMYVEVDVNSGPCYGRTVCDELGVLGKPANTKV
                     GITIDTDWFWGLVEECVRGYIKTH"
     gene            831..2078
                     /locus_tag="JN125_002237"
     CDS             831..2078
                     /locus_tag="JN125_002237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
                     /protein_id="HAY8872008.1"
                     /translation="MDVMRSVLGMVVLLTIAFLLSVNKKKISLRTVGAALVLQVVIGG
                     IMLWLPAGRWIAEKVAFGVHKVMAYSDAGSAFIFGSLVGPKMDTLFDGAGFIFGFRVL
                     PAIIFVTALVSILYYIGVMGILIRILGGIFQKALNISKIESFVAVTTIFLGQNEIPAI
                     VKPFIDHLNRNELFTAICSGMASIAGSTMIGYAALGVPVEYLLAASLMAIPGGILFAR
                     LLSPATESSQVSFNNLSFTETPPKSIIEAAATGAMTGLKIAAGVATVVMAVAIIALIN
                     GIIGGVGGWFGFAHASLESILGYLLAPLAWVMGVDWSDANLAGSLIGQKLAINEFVAY
                     LNFSPYLQTGGTLDAKTVAIISFALCGFANFGSIGVVVGAFSAVAPHRAPEIAQLGLR
                     ALAAATLSNLMSATIAGFFIGLA"
     gene            complement(2134..3222)
                     /locus_tag="JN125_002238"
     CDS             complement(2134..3222)
                     /locus_tag="JN125_002238"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HAY8872009.1"
                     /translation="MNNREKEILAILRRNPLIQQNEIADMLQISRSRVAAHIMDLMRK
                     GRIKGKGYILTEQEYCVVVGTINMDIRGMADIRYPQAASHPGTIHCSAGGVGRNIAHN
                     LALLGRDVHLLSVIGDDFYGEMLLEETRRAGVNVSGCVRLHGQSTSTYLAIANRDDQT
                     VLAINDTHLLEQLTPQLLNGSRDLLRHAGVVLADCNLTAEALEWVFTLADEIPVFVDT
                     VSEFKAGKIKHWLAHIHTLKPTLPELEILWGQAITSDADRNAAVNALHQQGVQQLFVY
                     LPDESVYCSEKDGEQFLLTAPAHTTVDSFGADDGFMAGLVYSFLEGYSFRDSARFAVA
                     CAAISRASGSLNNPTLSADNALSLVPMV"
     gene            complement(3225..4082)
                     /gene="nfo"
                     /locus_tag="JN125_002239"
     CDS             complement(3225..4082)
                     /gene="nfo"
                     /locus_tag="JN125_002239"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HAY8872010.1"
                     /translation="MKYIGAHVSAAGGLANAAIRAAEIDATAFALFTKNQRQWRAAPL
                     TTQTIDEFKAACEKYHYTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCEQLG
                     LSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVTAVIENTAGQGSNLGFKFEH
                     LAAIIDGVEDKSRVGVCIDTCHAFAAGYDLRTPAECEKTFADFARIVGFKYLRGMHLN
                     DAKSTFGSRVDRHHSLGEDNIGHDAFRWIMQDDRFDGIPLILETINPDIWAEEIAWLK
                     AQQTEKAVA"
     gene            complement(4156..5205)
                     /locus_tag="JN125_002240"
     CDS             complement(4156..5205)
                     /locus_tag="JN125_002240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HAY8872011.1"
                     /translation="MTNITLQKQHRTLWHFIPGLALSAVITGVALWGGSIPAVAGAGF
                     SALTLAILLGMVLGNTIYPHIWKSCDGGVLFAKQYLLRLGIILYGFRLTFSQIADVGI
                     SGIIIDVLTLSSTFLLACFLGQKVFGLDKHTSWLIGAGSSICGAAAVLATEPVVKAEA
                     SKVTVAVATVVIFGTVAIFLYPAIYPLMSQWFSPETFGIYIGSTVHEVAQVVAAGHAI
                     SPDAENAAVISKMLRVMMLAPFLILLAARVKQLSGANSGEKSKITIPWFAILFIVVAI
                     FNSFHLLPQSVVNMLVTLDTFLLAMAMAALGLTTHVSALKKAGAKPLLMALVLFAWLI
                     VGGGAINYVIQSIIA"
     gene            5305..6186
                     /locus_tag="JN125_002241"
     CDS             5305..6186
                     /locus_tag="JN125_002241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY8872012.1"
                     /translation="MHITLRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQ
                     LGVQLFDRVGKRLVVNEHGRLLYPRALALLEQAVEIEQLFREDNGAIRIYASSTIGNY
                     ILPAVIARYRHDYPQLPIELSVGNSQDVMQAVLDFRVDIGFIEGPCHSTEIISEPWLE
                     DELVVFAAPTSPLARGPITLEQLAAAPWILRERGSGTREIVDYLLLSHLPKFEMAMEL
                     GNSEAIKHAVRHGLGISCLSRRVIEDQLQAGTLSEVAVPLPRLMRTLWRIHHRQKHLS
                     NALRRFLDYCDPANVPR"
     gene            6391..7860
                     /gene="lysP"
                     /locus_tag="JN125_002242"
     CDS             6391..7860
                     /gene="lysP"
                     /locus_tag="JN125_002242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine-specific permease"
                     /protein_id="HAY8872013.1"
                     /translation="MVSETKTTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATIS
                     QAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNY
                     WYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFS
                     LIKVTTVIVFIIVGVLMIIGIFKGAQPAGWSNWTIGEAPFAGGFAAMIGVAMIVGFSF
                     QGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDV
                     KDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPR
                     IFAKLSRGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAIS
                     HYRFRRGYVLQGHDINDLPYRSGFFPLGPIFAFILCLIITLGQNYEAFLKDTIDWGGV
                     AATYIGIPLFLIIWFGYKLIKGTHFVRYSEMKFPQNDKK"
     gene            8153..10133
                     /gene="cirA"
                     /locus_tag="JN125_002243"
                     /pseudo
     CDS             8153..10133
                     /gene="cirA"
                     /locus_tag="JN125_002243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416660.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="catecholate siderophore receptor CirA"
     gene            complement(10165..11001)
                     /gene="yeiG"
                     /locus_tag="JN125_002244"
     CDS             complement(10165..11001)
                     /gene="yeiG"
                     /locus_tag="JN125_002244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-formylglutathione hydrolase"
                     /protein_id="HAY8872014.1"
                     /translation="MEMLEEHRCFEGWQQRWRHDSSTLNCPMTFSIFLPPPRDHTPPP
                     VLYWLSGLTCNDENFTTKAGAQRVAAELGIVLVMPDTSPRGEKVANDDGYDLGQGAGF
                     YLNATQPPWATHYRMYDYLRDELPALVQSQFNVSDRCAISGHSMGGHGALIMALKNPG
                     KYTSVSAFAPIVNPCSVPWGIKAFSSYLGEDKNAWLEWDSCALMYASNAQDAIPTLID
                     QGDNDQFLADQLQPAVLAEAARQKAWPMTLRIQPGYDHSYYFIASFIEDHLRFHAQYL
                     LK"
     gene            11259..11927
                     /gene="folE"
                     /locus_tag="JN125_002245"
     CDS             11259..11927
                     /gene="folE"
                     /locus_tag="JN125_002245"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HAY8872015.1"
                     /translation="MPSLSKEAALVHEALVARGLETPLRPPVHEMDNETRKSLIAGHM
                     TEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDYANFPKITLIENKMKVDEMVTV
                     RDITLTSTCEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQIL
                     IALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHEFLRAV
                     RHHN"
     gene            11944..13101
                     /locus_tag="JN125_002246"
     CDS             11944..13101
                     /locus_tag="JN125_002246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF418 family protein"
                     /protein_id="HAY8872016.1"
                     /translation="MERNVTLDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAITP
                     QDAWTWAFLDLIGQVKFLTLFALLFGAGLQMLLPRGRRWIQSRLTLLVLLGFIHGLLF
                     WDGDILLAYGLVGLICWRLVRDAPSVKSLFNTGVMLYLVGLGVLLLLGLISDSQTSRA
                     WTPDASAILYEKYWKLHGGVEAISNRADGVGNSLLALGAQYGWQLAGMMLIGAALMRS
                     GWLKGQFSLRHYRRTGFVLVAIGVTINLPAIALQWQLDWAYRWCAFLLQMPRELSAPF
                     QAIGYASLFYGFWPQLSRFKLVLAIACVGRMALTNYLLQTLICTMLFYHLGLFMHFDR
                     LELLAFVIPVWLANILFSVIWLRYFRQGPVEWLWRQLTLRAAGTAISKTSR"
     gene            13243..14282
                     /gene="galS"
                     /locus_tag="JN125_002247"
                     /pseudo
     CDS             13243..14282
                     /gene="galS"
                     /locus_tag="JN125_002247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708050.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator GalS"
     gene            14562..15560
                     /gene="mglB"
                     /locus_tag="JN125_002248"
     CDS             14562..15560
                     /gene="mglB"
                     /locus_tag="JN125_002248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose/glucose ABC transporter
                     substrate-binding protein MglB"
                     /protein_id="HAY8872017.1"
                     /translation="MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVR
                     KAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEK
                     ARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNK
                     DGQIQSVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAW
                     LSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGT
                     VLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK"
     gene            15621..>15711
                     /locus_tag="JN125_002249"
     CDS             15621..>15711
                     /locus_tag="JN125_002249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020883197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter ATP-binding protein"
                     /protein_id="HAY8872018.1"
                     /translation="MVSSTTPSSGEYLLEMSGINKSFPGVKALD"
BASE COUNT         3715 a         3917 c         4209 g         3870 t
ORIGIN      
        1 ttatgcgtaa acaaatcgtt gccgataata ttcacggtga aaccggactg gatggtccgg
       61 tattcgagtc gctgacccgc caggcagaaa gtacccacgc ggtgaaatac atcattgata
      121 ccctgatggc aagcgatggc gatatcactc tggtgccggt tggtccgctt tcaaatatcg
      181 cggtggcaat gcgtatgcaa cccgcgatcc tgcccaaaat ccgtgaaatt gtgctaatgg
      241 gcggcgctta cggtacaggc aacttcacgc catctgccga gttcaacatc tttgctgatc
      301 cggaagcagc ccgcgtggtg ttcacctccg gcgttccatt agtgatgatg ggcctcgatc
      361 tcaccaacca gactgtttgc accccggacg tgattgcacg gatggaaagg gcaggcggcc
      421 ctgccggaga gctgttcagc gacatcatga acttcactct caaaacgcag ttcgaaaact
      481 acggcctggc tggcggcccg gtgcacgacg ccacctgcat cggttatctg attaaccctg
      541 atggcattaa aacccaggag atgtacgtcg aagtggacgt caacagtggc ccttgctatg
      601 ggcgtaccgt ctgcgacgag ctgggcgttc ttggcaagcc cgctaatacc aaagtcggca
      661 tcactattga taccgactgg ttctggggct tagtcgaaga gtgcgtgcgc ggctacatca
      721 aaacccatta agtgttgata acaagccggg tcagtatcgc aagatccaag cccggctatt
      781 tctgatgggc agaaagccgt cgcccaatat gacatgaaga gataataact atggatgtca
      841 tgagaagtgt tctgggaatg gtggtattgc tgacgattgc gtttttgctg tcagtaaaca
      901 agaagaagat cagcctgcgt accgttggcg cggcgttagt gttacaggtc gtgattggcg
      961 ggattatgct ttggttaccg gcagggcgtt ggatcgctga aaaagtcgct tttggcgtgc
     1021 ataaagtgat ggcgtacagc gacgcgggta gcgcatttat cttcggttcg ctggtcgggc
     1081 cgaaaatgga cacgctgttt gatggcgcag gatttatctt tggtttcagg gtattaccgg
     1141 caattatctt cgtcactgca ctggtgagta ttctctacta catcggtgtg atggggattt
     1201 taattcgcat tctcggcggt atattccaga aagcattaaa tatcagcaag attgagtcat
     1261 tcgtcgcggt caccaccatt ttcctcgggc aaaacgaaat tccggcgatc gtcaaaccct
     1321 ttatcgatca tctgaatcgc aatgaattat ttacagcgat ttgtagtggc atggcctcga
     1381 ttgctggttc gacaatgatt ggttacgccg ccctgggcgt acctgtggaa tatttgctgg
     1441 cggcatcgtt aatggcgatc ccaggcggga tcttgtttgc ccgcctgtta agcccggcta
     1501 cggaatcttc gcaggtttcc tttaataacc tctctttcac cgaaacaccg ccaaaaagca
     1561 ttattgaagc cgctgcgaca ggggcaatga ccgggctgaa aatcgccgcc ggtgtagcga
     1621 cagttgttat ggcagtcgcc atcattgcgt taattaatgg tattatcggc ggcgttggcg
     1681 gctggtttgg ttttgcacat gcctcgctgg agtccatttt aggttacctg ttggccccat
     1741 tggcgtgggt gatgggggtt gactggagtg atgcaaatct tgccgggagt ttgattgggc
     1801 agaagctggc gatcaatgaa tttgtcgctt atctcaattt ctcgccatat ctgcaaacgg
     1861 gtggcactct ggatgctaaa accgtggcga ttatttcttt cgcgttgtgc ggtttcgcta
     1921 actttggttc tatcggggtg gtggtggggg cgttttctgc ggttgcgcca caccgtgcgc
     1981 cggaaatcgc ccaacttggt ttacgcgcgc tggcggcggc gacactttct aacctgatga
     2041 gtgctactat tgcaggattc tttattggtt tagcgtagtg cgcaatttat gagccggata
     2101 agatgcggtc aagcgtcgaa tccggcaaca ttgttacacc attggcacta atgaaagcgc
     2161 gttatcggca gacagggtag ggttgtttaa gctgccgctg gcgcgcgaaa ttgccgcgca
     2221 ggctaccgca aaacgggcgc tgtcgcggaa actgtatcct tcaagaaagc tatatactag
     2281 gcccgccata aaaccatcgt cagcaccaaa actgtctact gtcgtatgcg ctggcgcggt
     2341 cagcaaaaat tgttctccat ccttttcgct gcaataaact gactcatcgg gcaaataaac
     2401 aaacagttgc tgaacacctt gctgatgcaa tgcattcact gcggcattac ggtcagcatc
     2461 gctggtgatc gcctgtcccc ataaaatttc cagctccggt aaagtgggtt tcagggtgtg
     2521 aatatgcgcc agccagtgtt tgattttgcc cgctttgaat tctgaaacgg tatcgacaaa
     2581 caccgggatt tcatcagcga gggtaaagac ccattccagc gcctcggctg tcaggttgca
     2641 atcagccagt accacgcccg catgacgaag taaatcgcgc gacccgttca gtagttgcgg
     2701 tgtcaactgt tccagcagat gggtatcgtt aatcgccagc acggtttgat cgtctcgatt
     2761 ggcaattgcc agatacgtcg atgtgctttg accatgcaaa cgaacgcagc cggagacatt
     2821 cacgccggca cggcgcgttt cttccaggag catttcgcca taaaagtcat cgccaatcac
     2881 tgaaagcaaa tggacgtcac ggcctaacag cgccagattg tgggcgatgt tgcgtcccac
     2941 gccgcccgcc gagcaatgaa ttgtaccggg atgagaagcc gcttgcgggt aacggatatc
     3001 cgccatcccg cgaatatcca tattgattgt ccccaccact acgcagtatt cctgctcggt
     3061 gagaatgtaa cctttgcctt taatccgccc tttgcgcatt aaatccataa tatgcgccgc
     3121 aacgcgcgaa cgactgattt gcagcatgtc cgcaatttcg ttctgctgaa tcagcgggtt
     3181 acgccgtaaa attgcaagga tctccttttc ccggttattc atcttcaggc taccgctttt
     3241 tcagtttgtt gcgctttcag ccaggcgatc tcttctgccc agatatccgg gttgatggtt
     3301 tcaaggatca gcggaatgcc gtcgaaacgg tcgtcctgca tgatccagcg gaacgcatca
     3361 tgaccgatat tgtcttcacc gaggctatga tggcggtcaa cgcggctgcc aaaggtgctt
     3421 ttcgcatcgt taaggtgcat cccgcgcaga tacttaaagc caacaatacg ggcaaaatcc
     3481 gcgaacgttt tctcgcattc ggctggagta cgcaaatcat acccggcagc gaaagcatgg
     3541 caggtatcaa tgcagacgcc gacacgggat ttatcttcca cgccgtcgat aatcgccgcg
     3601 agatgttcga atttaaaccc taagttactg ccctgaccgg cggtgttttc aatcaccgct
     3661 gttacacctt gagttttatc cagcgcaatg ttgatggatt cggcaatacg cgcaaggcaa
     3721 tcctcttctg aaatctgcat cagatggctg ccagggtgga agttgagcaa agaaagcccc
     3781 agttgttcgc aacgctgcat ttcatctata aaggcatcgc gcgatttttc cagagcttca
     3841 gtgaccggat gtccgaggtt aatcagatag ctgtcgtggg gaagaatttg cgccgatgtg
     3901 tagtgatatt tttcacaggc cgctttgaat tcatcgatgg tttgcgtcgt gagcggtgcg
     3961 gcacgccact gacgttggtt tttggtgaac aaggcaaacg cggttgcgtc gatttcggcg
     4021 gcgcgaattg cggcatttgc cagaccgcca gcagcactaa cgtgcgctcc aatgtatttc
     4081 atgcgaggac tcctgttaaa cccgctggag gaaaacggta atgatagcgg gttaacagga
     4141 gcaagatgta gtggtttatg cgatgatgct ttgaatcaca tagttaatcg caccaccacc
     4201 aacaatcagc caggcaaaca gtaccagtgc catcagcaga ggtttcgccc cggctttttt
     4261 cagcgcgctg acgtgagtgg tcagacccag cgccgccatc gccattgcca gcaggaaggt
     4321 atccagcgtt accagcatgt tcaccacgct ctgcggtaac aggtggaacg agttaaagat
     4381 ggcaacgacg atgaacaaga tggcaaacca cggaatagtg attttgcttt tctcgccgct
     4441 gttcgcccca gacagctgtt taacacgcgc cgccagcagg atgaggaacg gagccagcat
     4501 catcacgcgc agcattttgg aaataactgc tgcgttttcc gcatccgggc tgatggcatg
     4561 acctgccgcc accacctgcg ccacttcgtg cacagtagaa ccaatgtaga taccgaaagt
     4621 ttccggacta aaccattgag acatcagcgg atatatcgcc gggtagagga aaatcgcgac
     4681 ggtcccgaag ataacaacgg ttgcaacagc cacggttact ttactggctt ccgctttcac
     4741 taccggctca gtcgccagta ccgcggcagc accacagata ctgctaccgg caccgatcaa
     4801 ccagctggtg tgcttatcca gaccaaacac tttctgcccc aggaagcaag ccagcaggaa
     4861 ggtactggac agcgtcaaca cgtcaatgat gatcccactg ataccgacat cggcaatttg
     4921 cgagaacgtc agacggaagc cataaagaat gatacccaga cgtaataaat attgcttggc
     4981 aaacagcaca ccaccgtcac agcttttcca gatgtgcgga tagatggtgt tgcctaaaac
     5041 catccccaac aagattgcga gggtgagggc actaaacccg gcacccgcaa ccgcgggaat
     5101 ggaaccaccc cacagggcga ccccggtgat aactgcactc agggctaacc ccggaataaa
     5161 atgccacagt gtacgatgtt gtttctgtaa ggtgatattc gtcataaccc tctccttata
     5221 accgggcata aggttacgac taactggttt aaaaataaaa ttgattatat atttataatt
     5281 aatctttata agtggtaagc gactatgcac atcaccctcc ggcagttgga agtttttgca
     5341 gaagtattga aaagtggatc aaccacccag gcgtcggtga tgctggcgtt gtcgcaatca
     5401 gcagtgagcg cagccttgac cgacctggaa gggcagcttg gcgtgcaact gtttgatcgc
     5461 gtggggaaaa gactggttgt taatgaacac gggcggctgc tctatccgcg tgcgttggca
     5521 ttgcttgaac aggcggttga aatcgaacaa ctgtttcgcg aagacaacgg cgcgattcgt
     5581 atctatgcca gtagtaccat cggtaactac attctgcctg cagttatcgc ccgttatcgc
     5641 catgattatc cgcagttgcc gattgaactt agcgttggga acagccagga cgtgatgcaa
     5701 gcggtgctgg atttccgcgt tgatattggc tttattgaag gaccgtgcca cagcactgaa
     5761 atcatttctg aaccgtggct ggaagacgag ctggtggttt tcgccgcgcc gacttcgccg
     5821 ttggctcgtg gtccgatcac cttagaacag ctggccgctg cgccgtggat cctgcgtgaa
     5881 cgcggttccg gcacgcggga gattgtcgat tatctattgc tgtcacattt accgaagttt
     5941 gagatggcga tggaattagg taactccgag gcaatcaaac atgcggtgcg tcatgggttg
     6001 ggaattagtt gcctgtcgcg acgggtgatt gaagatcaat tgcaggcagg cacattaagt
     6061 gaagttgcgg tccctctgcc gcgcctgatg cgtacgttgt ggcgtataca tcatcggcaa
     6121 aaacaccttt ccaacgcgct acggcgcttt ctggactatt gcgatcccgc gaatgtaccg
     6181 cgttaagttg ctgtacaaga acatgctggt gctgtgtcga tttcgtgacg cagcgccctc
     6241 agcatgcatt cgccagaaaa gagattggct gctttactta taatccctgg gcgatcatga
     6301 aggtgtctta taaccgtgta tttctgccgg aaggattgcc aattgtctgc tacaatcgcg
     6361 cctcattttt aagatggata gcatttttgt atggtttccg aaactaaaac cacagaagcg
     6421 ccgggcttac gccgtgaatt aaaggcgcgt cacctgacga tgattgccat tggcggttcc
     6481 atcggtacag gtctttttgt tgcctctggc gcaacgattt ctcaggcagg tccgggcggg
     6541 gcattgctct cgtatatgct gattggcctg atggtttact tcctgatgac cagtctcggt
     6601 gaactggctg catatatgcc ggtttccggt tcgtttgcca cttacggtca gaactatgtt
     6661 gaagaaggct ttggcttcgc gctgggctgg aactactggt acaactgggc ggtgactatc
     6721 gccgttgacc tggttgcagc tcagctggtc atgagctggt ggttcccgga tacaccgggc
     6781 tggatctgga gtgcgttgtt cctcggcgtt atcttcctgc tgaactacat ctcagttcgt
     6841 ggctttggtg aagcggaata ctggttctca ctgatcaaag tcacgacagt tattgtcttt
     6901 atcatcgttg gcgtgctgat gattatcggt atcttcaaag gcgcgcagcc tgcgggctgg
     6961 agcaactgga caatcggcga agcgccgttt gctggtggtt ttgcggcgat gatcggcgta
     7021 gctatgattg tcggcttctc tttccaggga accgagctga tcggtattgc tgcaggcgag
     7081 tccgaagatc cggcgaaaaa cattccacgc gcggtacgtc aggtgttctg gcgaatcctg
     7141 ttgttctatg tgttcgcgat cctgattatc agcctgatta ttccgtacac cgatccgagc
     7201 ctgctgcgta acgatgttaa agacatcagc gttagtccgt tcaccctggt gttccagcac
     7261 gcgggtctgc tctctgcggc ggcggtgatg aacgcagtta ttctgacggc ggtgctgtca
     7321 gccggtaact ccggtatgta tgcgtctact cgtatgctgt acaccctggc gtgtgacggt
     7381 aaagcgccgc gcattttcgc taaactgtcg cgtggtggcg tgccgcgtaa tgcgctgtat
     7441 gcgacgacgg tgattgccgg tctgtgcttc ctgacctcca tgtttggcaa ccagacggta
     7501 tacctgtggc tgctgaacac ctccgggatg acgggtttta tcgcctggct ggggattgcc
     7561 attagccact atcgcttccg tcgcggttac gtattgcagg gacacgacat taacgatctg
     7621 ccgtaccgtt caggtttctt cccactgggg ccgatcttcg cattcattct gtgtctgatt
     7681 atcactttgg gccagaacta cgaagcgttc ctgaaagata ccattgactg gggcggcgta
     7741 gcggcaacgt atattggtat cccgctgttc ctgattattt ggttcggcta caagctgatt
     7801 aaaggaactc acttcgtacg ctacagcgaa atgaagttcc cgcagaacga taagaaataa
     7861 gtttcctccc ttccttgcta agccctctca accgagaggg ctttttcaat tccatttccc
     7921 tgacaaatca tgcggatata aaatttaaca tttagattga taattgttat cgtttgcatt
     7981 atcgttacgc cgcaatcaaa aaaggctgac aaatcagagg ctgttccggc tttctgggat
     8041 gatcacctgc atacaaataa gtccaccgcg atgctgccgt acgcaagggg acgtgaagaa
     8101 gatgtgagcg ataacccatt ttattttcgt agttacctca tggaaatatg gaatgtttag
     8161 gttgaaccct ttcgtacggg tcgggctgtg tttgtccgct atttcttgtg catggcctgt
     8221 gttagcggtc gatgatgatg gcgaaacgat ggttgtcact gcatcttccg ttgaacaaaa
     8281 cctcaaagat gcacccgcca gtatcagcgt cattacccag gaagacctgc agcgaaaacc
     8341 ggtacagaat ctgaaggatg tcctcaaaga agtgcctggc gtacaactga cgaacgaagg
     8401 ggataaccgt aagggcgtta gtattcgtgg tctggacagc agctacaccc tgattctcgt
     8461 cgacggtaaa cgcgttaact cccgcaatgc cgtcttccgc cacaatgatt tcgatctgaa
     8521 ctggatcccg gtcgattcca tcgaacgtat tgaagtggtt cgtggcccga tgtcgtcgct
     8581 atacggctcc gatgcgctcg gcggtgtagt gaatatcatc accaaaaaaa tcggtcagaa
     8641 atggtcgggt accgttaccg tcgataccac cattcaggaa catcgcgatc gcggtgatac
     8701 ctataacggt cagttcttta ccagtggacc attaattgat ggtgtgctgg gaatgaaagc
     8761 ttacggcagc ctggcaaaac gtgaaaagga tgacccgcaa aactcaacga ccaccgatac
     8821 cggagaaacg ccgcgtattg aaggattctc cagccgcgac ggcaatgttg aatttgcctg
     8881 gacaccgaat caaaatcacg attttactgc cggatacggt ttcgaccgtc aggaactcgc
     8941 tggacaaaaa ccgcctggaa cgccagaact actccgtcag ccataatggg cgttgggatt
     9001 acggcaccag cgaactgaaa tactacggtg agaaagtcga gaacaaaaac cctggcaaca
     9061 gcagcccgat aacttccgaa agcaatacgg tcgacggcaa atacacgttg ccgctgacgg
     9121 cgattaatca gtttctcacg gttggcggtg aatggcgtca cgacaaactt agcgatgcgg
     9181 tgaacctgac cgggggaacc agctccaaaa cgtctgccag ccagtacgcg ctgtttgtgg
     9241 aagatgaatg gcggatcttc gagccgctgg cgctgacgac cggcgtgcgt atggacgatc
     9301 acgaaaccta cggtgaacac tggagtccgc gtgcctacct ggtttataac gccaccgaca
     9361 ccgtaacggt gaaagggggc tgggcgacgg catttaaagc accttctctg ttgcaactta
     9421 gccctgactg gacgagcaat tcctgccgtg gcgcatgtaa gattgtgggt agcccggatc
     9481 tgaaaccaga aaccagcgaa agttgggagc tggggcttta ctacatgggt gaagaaggct
     9541 ggctggaagg ggttgaatcc agcgttaccg ttttccgtaa cgatgtgaaa gatcgtatca
     9601 gcatcagccg tacgtctgac gtcaacgctg caccgggcta ccaaaacttt gttggttttg
     9661 agacgggcgc taacggacgg cgcataccgg tatttagcta ctacaacgtt aacaaagctc
     9721 gtattcaggg cgtggaaacc gaactgaaaa ttccgttcaa cgatgaatgg aaactgtcga
     9781 tcaactacac ctacaacgat ggtcgtgatg tcagcaacgg cgaaaacaaa ccgctatccg
     9841 atctgccgtt ccatactgct aacggtacgc tggactggaa accgctggcg ctggaagact
     9901 ggtcattcta tgtttctggt cactataccg ggcagaaacg cgccgacagc gcgacggcta
     9961 aaacaccggg cggttatacc atctggaata ccggcgcggc ctggcaggtg actaaagacg
    10021 tcaaactgcg cgcaggcgtg ctgaaccttg gcgacaagga tctcagtcgt gacgactaca
    10081 gctataacga agacggacgt cgttacttta tggcagtgga ttatcgcttc tgatgagaag
    10141 atgcccggcg aaccgggcgg actttcactt cagtaaatac tgcgcatgga agcgcaggtg
    10201 atcctctata aaagaggcga tgaagtagta actgtgatca tatcccggct gaatacgcag
    10261 cgtcatcggc cacgctttct ggcgcgcggc ttctgccagt accgcaggtt gcaactggtc
    10321 ggcaagaaac tgatcattat cgccctgatc gataagcgtc gggatcgcat cctgcgcgtt
    10381 actggcatac atcagcgcgc aactgtccca ttccagccat gcatttttgt cctcacctaa
    10441 atagctgcta aacgctttga ttccccacgg gacgctgcac ggattcacaa ttggcgcaaa
    10501 ggccgaaacg ctggtgtatt tacccggatt tttcagcgcc ataatcagcg caccgtgacc
    10561 acccattgag tgaccgctaa tggcgcagcg gtcgctgaca ttaaattgcg attgaaccag
    10621 cgccggtaat tcatcgcgca gataatcata catccggtaa tgcgtcgccc acggcggttg
    10681 cgtggcatta agataaaagc ctgcgccctg gcctaaatcg tagccatcgt cgttggcaac
    10741 cttttcgccg cgcgggctgg tgtctggcat caccagtaca atccccagtt ctgccgccac
    10801 gcgctgggca cccgccttgg tggtgaagtt ctcgtcattg caggttaatc cggaaagcca
    10861 gtacagcact ggtggcgggg tgtgatcacg agggggtggg agaaagatac tgaacgtcat
    10921 cgggcagttt aaggtactgg agtcgtgtcg ccagcgttgc tgccagcctt caaaacagcg
    10981 gtgctcttcg agcatttcca tgcgtggctc cttgttgtgt tgtttgcaat ttcttcatca
    11041 taccgtttat tcaatgtgct gtgagtaact ttcacttccg tatttgcata acgatgtttt
    11101 aacatctgct gatgaaaggc agcggcaatt acaataatta tcgctgtgaa tactggatta
    11161 tgtgcgccgc ctcacgcaca ataatcaggc tgtaaatcag cttaataact ttgcccccac
    11221 gcagggcgga ggcgtcacac ctgcaggaga aatcataaat gccatcactc agtaaagaag
    11281 cggccctggt tcatgaagcg ttagttgcgc gaggactgga aacaccgctg cgcccgcccg
    11341 tgcatgaaat ggataacgaa acgcgcaaaa gccttattgc tggtcatatg accgaaatca
    11401 tgcagctgct gaatctcgac ctggctgatg acagtttgat ggaaacgccg catcgcatcg
    11461 ctaaaatgta tgtcgatgaa attttctccg gtctggatta cgccaacttc ccgaaaatca
    11521 ccctcattga aaacaaaatg aaggtcgatg aaatggtcac cgtgcgcgat atcactctga
    11581 ccagtacctg tgaacaccat tttgttacca tcgatggcaa agcgacggtg gcttatatcc
    11641 cgaaagattc ggtgatcggt ctgtcaaaaa ttaaccgtat cgtgcagttc tttgcccagc
    11701 gtccgcaggt gcaggaacgt ctgacgcagc aaattcttat tgcgctacaa acgctgctgg
    11761 gcaccaataa cgtggctgtc tccattgatg cggtgcatta ctgcgtgaaa gcgcgtggca
    11821 tccgcgatgc aaccagtgcc acaacaacga cctctcttgg tggattgttc aaatccagtc
    11881 agaatacgcg ccacgagttt ctgcgcgctg tgcgtcatca caactgatta aaaggcagga
    11941 accatggagc gcaacgtaac gctcgatttt gttcgcggcg tcgccattct ggggatcctg
    12001 ctattaaaca tcagcgcctt tgggctacca aaggcggctt atctcaatcc cgcttggtac
    12061 ggcgctatta cgccgcagga tgcatggacc tgggcatttc tcgatctcat cggccaggtg
    12121 aaattcctca cgctttttgc gctgctgttt ggtgcgggcc tgcaaatgtt gctgccccgt
    12181 ggcagacgct ggatccagtc gcggttaacg ctgttagtct tgctgggttt tattcacggt
    12241 ttattgttct gggacggcga tattctgctg gcttacgggc tggtgggctt aatctgctgg
    12301 cggctggtgc gcgatgcgcc atcggtaaaa agcctgttta atacaggcgt catgctttat
    12361 ctggtggggc ttggcgtttt gctgttattg gggctgattt ccgacagcca gaccagccgc
    12421 gcctggacgc cggatgcatc ggctattttg tatgaaaaat actggaagct tcacggcggc
    12481 gttgaagcaa tcagtaatcg tgccgatggt gttggcaaca gtttactggc actgggcgca
    12541 cagtatggct ggcaactggc agggatgatg ctcattggtg cggcgctgat gcgcagcggc
    12601 tggctgaaag ggcagttcag cttacgtcac tatcgtcgta ctggttttgt gctggtggcg
    12661 attggggtga ctattaacct tcctgccatc gccctgcaat ggcagctgga ctgggcgtat
    12721 cgctggtgtg ccttcttact tcaaatgccg cgggaactga gtgcgccgtt tcaggcgatt
    12781 ggctatgcgt cgctgtttta tggcttctgg ccgcaattga gccgctttaa gctggtgctt
    12841 gcgatcgcct gcgtcggacg gatggcgctg accaactatc tattgcaaac gctgatttgt
    12901 accatgcttt tttaccacct cggtttgttt atgcattttg accgcctgga gctgctggcg
    12961 tttgttattc cggtatggct ggcgaatatc ctcttctctg ttatctggct gcgttacttc
    13021 cgccaggggc cggtggaatg gctctggcgt cagttaactt tgcgtgctgc cggaacggca
    13081 atatctaaaa catcaagata acgatctgga tcacattcgt taacaaaacg gctgtaaccg
    13141 tttccattgc tgtgactcga ttcacgaagt cctgtattca gtgctgacaa aatagccgcc
    13201 agcaagcagt catttactgc aatctcataa caggtagtga atatgatcac cattcgtgat
    13261 gtagcgcgtc aggctggcgt ctctgtggca acggtttccc gggtgctcaa taacagcacg
    13321 ctggtcagtg ccgacacgcg tgaagcagta atgaaagccg tgagtgagct ggattatcgg
    13381 ccaaacgcca atgcccaggc gctggcaact caggttagcg acaccattgg cgtggtggtg
    13441 atggacgttt ctgatgcgtt tttcggcgcg ctggtaaaag cggtggatct agtcgctcag
    13501 cagcatcaga aatacgtgct aatcggcaat agctatcatg aagcggaaaa agagcgtcac
    13561 gccattgagg tgttaattcg ccagcgttgt aatgcgttga ttgttcactc aaaagcattg
    13621 agtgacgatg aactggcgca atttatggat aacattcccg gtatggtgtt aatcaaccgc
    13681 gttgtgccgg ggtacgccca tcgttgcgtt tgcctggata atctcagcgg tgcccgaatg
    13741 gcgacgcgca tgttgctgaa taacggtcat caacgtattg gttatctttc ttccagtcac
    13801 ggcattgaag atgacgccat gcgtaaagca ggctggatga gtgcgttgaa agagcaggat
    13861 attattccgc cggaaagctg gattggcact ggtacgccgg acatgccggg cggtgaggcg
    13921 gcgatggttg aactgctggg gcgcaatcta caacttaccg ctatatttgc ttataacgac
    13981 aatatggccg ctggcgcact gacagcatta aaagataatg gcattgcgat tccgttacat
    14041 ctctcaatca tcggtttcga tgatattccc atcgcccgtt acaccgcccg caattaacga
    14101 ccgtgcgtta tcccattgct tcaatggcta aattagccac cgaactggcc ttgcaggggg
    14161 cagcaggcaa tattgatcct cgtgccagcc actgttttat gccgacgtta gtgcgtcgcc
    14221 attctgtcgc aacgcgccag aatgcggcgg cgatcactaa ctcaacaaat caggcgatgt
    14281 aaccgctttc aatctgtgag tgatttcaca gtatcttaac aatgtgatag ctatgattgc
    14341 accgttttaa cgttgtaacc cgtatgtaac agtgaataat cactttcacc gaggtaatag
    14401 cgtcataaca acaattaaag ccgttttctg gagcgttacc gggcatggaa gaacgaattt
    14461 taaaaagtga gcttcggcgt tcagtaacac ttcattaact ctactgccct gccgagcatt
    14521 tatctcaagc actaccctgc ataagaaaaa ccggagatac catgaataag aaggtgttaa
    14581 ccctgtctgc tgtgatggcc agcatgttat tcggtgccgc tgcacacgct gctgatactc
    14641 gcattggtgt aacaatctat aagtacgacg ataactttat gtctgtagtg cgcaaggcta
    14701 ttgagcaaga tgcgaaagcc gcgccagatg ttcagctgct gatgaatgat tctcagaatg
    14761 accagtccaa gcagaacgat cagatcgacg tattgctggc gaaaggggtg aaggcactgg
    14821 caatcaacct ggttgacccg gcagctgcgg gtacggtgat tgagaaagcg cgtgggcaaa
    14881 acgtgccggt ggttttcttc aacaaagaac cgtctcgtaa ggcgctggat agctacgaca
    14941 aagcctacta cgttggcact gactccaaag agtccggcat tattcagggc gatttgattg
    15001 ctaaacactg ggcggcgaat cagggttggg atctgaacaa agacggtcag attcagtccg
    15061 tactgctgaa aggtgaaccg ggccatccgg atgcagaagc acgtaccact tacgtgatta
    15121 aagaattgaa cgataaaggc atcaaaactg aacagttaca gttagatacc gcaatgtggg
    15181 ataccgctca ggcgaaagat aagatggacg cctggctgtc tggcccgaac gccaacaaaa
    15241 tcgaagtggt tatcgccaac aacgatgcga tggcaatggg cgcggtagaa gcactgaaag
    15301 cacacaacaa gtccagcatt ccggtgtttg gcgtcgatgc tctgccagaa gcgctggcgc
    15361 tggtgaaatc cggtgcactg gcgggcaccg tactgaacga tgctaacaac caggcgaaag
    15421 cgacctttga tctggcgaaa aacctggccg atggtaaagg tgcggctgat ggcaccaact
    15481 ggaaaatcga caacaaagtg gtccgcgtac cttatgttgg cgtagataaa gacaacctgg
    15541 ctgaattcag caagaaataa gactgattgg gcgcagtcta ttactgcgcc cttattgtat
    15601 gaccaacaag gtaaaattat atggtcagct caacgactcc gtcctccggg gaatacttgt
    15661 tggaaatgag cggtatcaac aagtcctttc ctggtgttaa ggcacttgat a
//
LOCUS       DADMHM010000081        15478 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.082, whole genome shotgun sequence.
ACCESSION   DADMHM010000081 DADMHM010000000
VERSION     DADMHM010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15478)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15478)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15478
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.082"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..1233)
                     /locus_tag="JN125_002250"
     CDS             complement(<1..1233)
                     /locus_tag="JN125_002250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309023.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HAY8872019.1"
                     /translation="MKITTVGVCIICGIFPLLILPQLPGTLTLAFLTLFACVLAFIPV
                     KTVRYIALTLLFFVWGILSAKQILWAGETLTGATQDAIVEITATDGMTTHYGQITHLQ
                     GRRIFPAPGLVLYGEYLPQAVCAGQQWSMKLKVRAVHGQLNDGGFDSQRYAIAQHQPL
                     IGRFLQASVIEPNCSLRAQYLASLQTTLQPYMWNAVILGLGMGERLSVPKEIKNIMRD
                     TGTAHLMAISGLHIAFAVLLAAGLIRGGQVFLPGRWIHWQMPLIGGICCAAFYAWLTG
                     MQPPALRTVVALATWGMLKLSGRQWSGWDVWICCLAAILLMDPVAILSQSLWLSAAAV
                     AALIFGYQWFPCPEWQLPPVLRAVVSLIHLQLGITLLLMPVQIVIFHGISLTSFIANL
                     LAIPLVTFITVPLILAAMV"
     gene            complement(1440..1724)
                     /gene="ihfB"
                     /locus_tag="JN125_002251"
     CDS             complement(1440..1724)
                     /gene="ihfB"
                     /locus_tag="JN125_002251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit beta"
                     /protein_id="HAY8872020.1"
                     /translation="MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIE
                     IRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG"
     gene            complement(1884..3557)
                     /gene="rpsA"
                     /locus_tag="JN125_002252"
     CDS             complement(1884..3557)
                     /gene="rpsA"
                     /locus_tag="JN125_002252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HAY8872021.1"
                     /translation="MTESFAQLFEESLKEIETRPGSIVRGVVVAIDKDVVLVDAGLKS
                     ESAIPAEQFKNAQGELEIQVGDEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAY
                     EDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLD
                     QKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLL
                     HITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPE
                     GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLD
                     IDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVH
                     LSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKK
                     GAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGV
                     DRKNRAISLSVRAKDEADEKDAIATVNKQEDANFSNNAMAEAFKAAKGE"
     gene            complement(3668..4351)
                     /gene="cmk"
                     /locus_tag="JN125_002253"
     CDS             complement(3668..4351)
                     /gene="cmk"
                     /locus_tag="JN125_002253"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000125007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HAY8872022.1"
                     /translation="MTAIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA
                     LAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQ
                     VAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRML
                     QLQEKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQ
                     YARQKLALA"
     gene            complement(4524..5287)
                     /locus_tag="JN125_002254"
                     /pseudo
     CDS             complement(4524..5287)
                     /locus_tag="JN125_002254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706828.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
     gene            complement(5456..6739)
                     /gene="aroA"
                     /locus_tag="JN125_002255"
     CDS             complement(5456..6739)
                     /gene="aroA"
                     /locus_tag="JN125_002255"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HAY8872023.1"
                     /translation="MESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNL
                     LDSDDVRHMLNALTALGVSYTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPL
                     AAALCLGSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGG
                     NVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQ
                     HYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRF
                     ADVLEKMGATICWGDDYISCTRGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNI
                     YNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEKLNFAEIATYNDHRMAMCFS
                     LVALSDTPVTILDPKCTAKTFPDYFEQLARISQAA"
     gene            complement(6810..7898)
                     /gene="serC"
                     /locus_tag="JN125_002256"
     CDS             complement(6810..7898)
                     /gene="serC"
                     /locus_tag="JN125_002256"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000057138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HAY8872024.1"
                     /translation="MAQIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGK
                     EFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYW
                     AATAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAID
                     ETPDFGKDVVVAADFSSTILSRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKA
                     NIACPSILDYSIFNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELL
                     YGVIDNSDFYRNDVAKANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGM
                     RASIYNAMPLEGVKALTDFMVEFERRHG"
     gene            complement(8097..8789)
                     /locus_tag="JN125_002257"
     CDS             complement(8097..8789)
                     /locus_tag="JN125_002257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF421 domain-containing protein"
                     /protein_id="HAY8872025.1"
                     /translation="MKAFDLHRMAFDKVPFDFLGEVALRSLYTFVLVFLFLKMTGRRG
                     VRQMSLFEVLIILTLGSAAGDVAFYDDVPMVPVLIVFITLALLYRLVMWLMAHSEKLE
                     DLLEGKPVVIIEDGELAWSKLNNSNMTEFEFFMELRLRGVEQLGQVRLAILETNGQIS
                     VYFFEDDKVKPGLLILPSDCTQRYKVVPESADYACIRCSEIIHMKAGEKQLCPRCANP
                     EWTKASRAKRVT"
     gene            8919..10679
                     /locus_tag="JN125_002258"
     CDS             8919..10679
                     /locus_tag="JN125_002258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     accessory protein YcaO"
                     /protein_id="HAY8872026.1"
                     /translation="MTQTFIPGKDAALEDSIARFQQKISDLGFQIEEASWLNPVPNVW
                     SVHIRDKECALCFTNGKGATKKAALASALGEYFERLSTNYFFADFWLGETIANGPFVH
                     YPNEKWFPLTENDDVPEGLLDDRLRAFYDPENELTGSMLIDLQSGNEDRGICGLPFTR
                     QSDNQTVYIPMNIIGNLYVSNGMSAGNTRNEARVQGLSEVFERYVKNRIIAESISLPE
                     IPADVLARYPAVVEAIETLEAEGFPIFAYDGSLGGQYPVICVVLFNPANGTCFASFGA
                     HPDFGVALERTVTELLQGRGLKDLDVFTPPTFDDEEVAEHTNLETHFIDSSGLISWDL
                     FKQDADYPFVDWNFSGTTEEEFATLMAIFNKEDKEVYIADYEHLGVYACRIIVPGMSD
                     IYPAEDLWLANNSMGSHLRETILSLPGSEWEKEDYLNLIEQLDEEGFDDFTRVRELLG
                     LATGSDNGWYTLRIGELKAMLALAGGDLEQALVWTEWTMEFNSSVFSPERANYYRCLQ
                     TLLLLAQEEDRQPLQYLNAFVRMYGADAVEAASAAMSGEAAFYGLQPVDSDLHAFAAH
                     QSLLKAYEKLQRAKAAFWAK"
     gene            11085..11942
                     /gene="focA"
                     /locus_tag="JN125_002259"
     CDS             11085..11942
                     /gene="focA"
                     /locus_tag="JN125_002259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate transporter FocA"
                     /protein_id="HAY8872027.1"
                     /translation="MKADNPFDLLLPAAMAKVAEEAGVYKATKHPLKTFYLAITAGVF
                     ISIAFVFYITATTGTGTMPFGMAKLVGGICFSLGLILCVVCGADLFTSTVLIVVAKAS
                     GRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQWGLNVLQTADHKVHHT
                     FIEAVCLGILANLMVCLAVWMSYSGRSLMDKAFIMVLPVAMFVASGFEHSIANMFMIP
                     MGIVIRDFASPEFWTAVGSAPENFSHLTVMNFITDNLIPVTIGNIIGGGLLVGLTYWV
                     IYLRENDHH"
     gene            11997..14279
                     /gene="pflB"
                     /locus_tag="JN125_002260"
     CDS             11997..14279
                     /gene="pflB"
                     /locus_tag="JN125_002260"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_459948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HAY8872028.1"
                     /translation="MSELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFL
                     AGATEATTTLWDKVMEGVKLENRTHAPVDFDTAVASTITSHDAGYINKQLEKIVGLQT
                     EAPLKRALIPFGGIKMIEGSCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRC
                     RKSGVLTGLPDAYGRGRIIGDYRRVALYGIDYLMKDKLAQFTSLQADLENGVNLEQTI
                     RLREEIAEQHRALGQMKEMAAKYGYDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMS
                     FGRTSTFLDVYIERDLKAGKITEQEAQEMVDHLVMKLRMVRFLRTPEYDELFSGDPIW
                     ATESIGGMGLDGRTLVTKNSFRFLNTLYTMGPSPEPNMTILWSEKLPLNFKKFAAKVS
                     IDTSSLQYENDDLMRPDFNNDDYAIACCVSPMIVGKQMQFFGARANLAKTMLYAINGG
                     VDEKLKMQVGPKSEPIKGDLLNYDEVMERMDHFMDWLAKQYITALNIIHYMHDKYSYE
                     ASLMALHDRDVIRTMACGIAGLSVAADSLSAIKYAKVKPIRDEDGLAIDFEIEGEYPQ
                     FGNNDPRVDDLAVDLVERFMKKIQKLHTYRDAIPTQSVLTITSNVVYGKKTGNTPDGR
                     RAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDEVR
                     KTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAMENPEKYPQLTIRVSGYAVRF
                     NSLTKEQQQDVITRTFTQSM"
     gene            14471..15211
                     /gene="pflA"
                     /locus_tag="JN125_002261"
     CDS             14471..15211
                     /gene="pflA"
                     /locus_tag="JN125_002261"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase 1-activating protein"
                     /protein_id="HAY8872029.1"
                     /translation="MSVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWD
                     THGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHT
                     CLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANK
                     NVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYK
                     LDGVKPPKKETMERVKGILEQYGHKVMF"
     gene            complement(15293..>15478)
                     /locus_tag="JN125_002262"
     CDS             complement(15293..>15478)
                     /locus_tag="JN125_002262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872030.1"
                     /translation="FVQMGWEKNISDYLKNMCSYLGIEDADVTFLCNTVVFDGEELHA
                     SYYQSLLSQVRDMVDAL"
BASE COUNT         3960 a         3946 c         3653 g         3919 t
ORIGIN      
        1 aaccatcgcg gcgaggatca acggaaccgt gataaatgtc accaagggaa ttgctaatag
       61 atttgcaata aacgaggtca gactaatgcc atgaaatatg acgatttgca caggcataag
      121 caggagtgtg attcccagtt gcaaatgaat gagggaaaca actgcacgca ataccggcgg
      181 cagttgccac tcaggacagg gaaaccactg gtacccaaaa atcagtgccg cgaccgcagc
      241 ggcagagagc cataaacttt gcgagagaat ggcaacagga tccatcagca aaattgccgc
      301 cagacaacat atccatacat cccagccact ccactgtcgc ccacttaact taagcattcc
      361 ccacgtagca agcgccacca cggtacgcaa tgcaggaggt tgcattcccg tcaaccaggc
      421 ataaaaagca gcacagcaga ttccaccaat taatggcatt tgccagtgga tccagcgccc
      481 aggcagaaaa acttgcccac cgcgaatgag tccggcagcc agcaacaccg caaaagcgat
      541 gtgcaatccc gatatcgcca ttaaatgcgc cgttccagta tcacgcatga tatttttgat
      601 ttctttgggg acggataacc gttcccccat acctaaacca agaataaccg cattccacat
      661 atagggttgc agcgttgttt gtagtgacgc cagatactgt gcacgcaggc tacaattcgg
      721 ttcaatgaca cttgcctgca gaaagcggcc gatgagcggc tgatgctggg caatggcata
      781 acgctggcta tcaaagccgc catcattaag ttggccatga actgcacgaa ctttgagttt
      841 cattgaccat tgttgtccag cacaaaccgc ttgcggaaga tattcgccat acagcacaag
      901 gcctggcgca gggaatatac gtcgaccttg tagatgagta atttgaccgt aatgagtggt
      961 catgccgtca gttgcagtga tctcaacaat tgcatcctgc gtcgcgccag ttaaggtttc
     1021 tcctgcccac aaaatttgct ttgctgataa tatgccccaa acgaaaaaca gcaacgtcag
     1081 cgcgatataa cggacggttt taacagggat aaatgccagt acgcaggcga agagagtcag
     1141 aaacgcaagg gttaatgtcc caggcaattg gggcaaaatc agcaacggaa aaattccgca
     1201 aattatgcat acgccgactg tcgttatttt catgcacccc tccctgttta tggaaagtgt
     1261 gcaactttgt tgagcggttg tctggtggga attttgcgtt ccccgaggca cattcagaag
     1321 aatttaacga aagggtgaaa actgctcaaa actctgcgag gcagcttcca gttcctgatt
     1381 agagaaatga aaaaagcacc cgacaggtgc ttttctcgcg ttcaagtttg agtaaaaact
     1441 taaccgtaaa tattggcgcg atcgcgcagt tctttaccag gtttaaagtg aggaacgtat
     1501 tttccttcca gttctacttt atcgccagtc ttcggattac gtccggtacg tggtgcgcgg
     1561 tagtgcaaag agaaactgcc gaaaccgcgg atttcaatac gctcgccctg cgcaagagtc
     1621 gaggccatat gctccagcat ctcttttact gcatcttcaa ccgtcttggc gggaatgtgc
     1681 gattgctggg tggcaagtct ttctatcaat tctgacttgg tcatgattcc tccggttcct
     1741 taaaggcaaa ttaagcggct gctgttgctg cattgattaa gggcggccgt agccgccctt
     1801 agtgcttgat tacaggacga aacctgcaat ctgtcaagta aactcaacaa acttcggaat
     1861 aaaaatcccg aagagtcaga gaattactcg cctttagctg ctttgaaagc ttcagccatt
     1921 gcgttgttgg agaagtttgc atcttcctgt ttgttaacag ttgcgattgc atctttctcg
     1981 tcagcttcgt ctttcgcacg aacagacagg ctgattgcgc ggtttttacg atcaacgccg
     2041 gtgaatttag cttcaacttc gtcgccaacg ctcagaacca gggtagcgtc ttcaacgcgg
     2101 tcacgggatg cttcagaagc acgcaggtaa ccttcaacgc cgtcagccag ttctacggtt
     2161 gcgcctttag cgtcaactgc agttacttta ccggttacga tagcgccttt cttgttcaga
     2221 gcaacccagt tgttgaacgg atcttctgcg agctgtttaa cgcccaggga gatacgttca
     2281 cgttctgcgt caacctgcag aacaactgca gcgatttcgt cgcctttttt gtattcacga
     2341 actgcttctt cgcctgcaac gttccaggag atgtcagaca ggtgaaccaa gccgtcgatg
     2401 ccgccgtcca ggccgatgaa gataccgaag tcagtgatag acttgatttt accttcaaca
     2461 cggtcgccct tgttgtgggt ttccgcgaac tgctgccacg ggttagcttt gcactgtttc
     2521 agacccaggg agatacgacg acgttcttcg tcgatatcca gaaccataac ttccactaca
     2581 tcgccaacgt taacaacttt ggacgggtgg atgtttttgt tggtccaatc catttcggaa
     2641 acgtgtacca ggccttcaac gccttcttcg atttcaacga agcagccgta gtcggtcagg
     2701 ttggtcacgc gaccagtcag tttggtacct tccggataac gtttagcgat agctacccac
     2761 ggatcttcgc ccaactgttt caggcccagg gatacacggg tacgttcgcg gtcgaacttc
     2821 agcactttaa cagtgatttc gtcgcccacg ttgacgattt cgctcggatg cttaacgcgt
     2881 ttccaggcca tgtcagtgat gtgcagcagg ccgtcaacgc cgcccagatc aacgaatgca
     2941 ccgtagtcag tgaggttctt aacgatacct ttaacttcca tgccttcctg caggttttcc
     3001 agcagctgat cgcgctctgc gctgttttcg gattcgataa cggcacgacg agaaacaaca
     3061 acgttgttgc gcttctgatc cagcttgatt actttaaatt caagctcttt gccttccagg
     3121 tgcagagtgt cacgcaccgg acgaacgtct accagagaac ctggcaggaa cgcacgaata
     3181 ccgttcagct caacagtgaa gccgccctta actttgccgt tgataacacc ggtaacagtt
     3241 tcagcatctt cgtaagcttt ttccagcgtg atccaggctt cgtgacgttt agctttctca
     3301 cgggacagca gagtttcacc gaagccgtct tctactgcgt ccagagcaac gtcaacttcg
     3361 tcacctacct ggatttccag ctcgccctgg gcgtttttga actgctcagc cgggatggcg
     3421 gactcagatt tcagaccagc gtcaaccagt actacgtctt tgtcgatagc aacaacaacg
     3481 ccacgaacga tagaacccgg gcgggtttcg atttctttta aggactcttc aaagagttga
     3541 gcaaaagatt cagtcatgtt taatcttcag gtttatattt aacgtccacc tagctccatg
     3601 ccggatgggg ttgtttaaca tacccgctgt cattccattg caacgggggt actgcaaatt
     3661 cggtcgctta tgcgagagcc aatttctggc gcgcgtattg tagcgctttt tcaatcactt
     3721 gctcaatgct taaggtggtg gaatccaaca ctaaagcatc ggctgccgga accagtggcg
     3781 ctaccgctcg gttacgatcg cggtcgtcgc gttctttgat ctcggccaaa aggcgctcaa
     3841 agttaacact aaagcccttc tcctgcaact gtagcatgcg gcgatgcgca cgttcttccg
     3901 aggaggcgtc aaggaaaatt ttcactggtg catcagggaa taccaccgtt cccatgtcgc
     3961 ggccatcggc aatcagacct ggtaattcgc gaaacgcgcg ttggcgacgc aataatgctt
     4021 cacgaacgcg tgggaatgcc gcgacttgtg aagccgcatt cgccacttcc tgagtacgaa
     4081 tttcgccgct gacatcttcc ccttcgagga tcacttccag attgccattg gttgacacaa
     4141 aacgtacatc cagatgggat gccagcggta ccagcgcatc ttctgacgca acatcaacat
     4201 ggtgatgtaa tgccgccaat gccagtacgc gataaattgc acccgaatcc agcagatgcc
     4261 attgcaatgc ttccgccata gccttacaca aggtgccttt ccctgcaccg cttgggccat
     4321 caatggtaat aaccggggca attgccgtca tctttatctc cttaaaacag gcgtaccgtt
     4381 aacataaccg cgcgcattat acgcgccgac gccacaaatc gttaacgttg tgtgcaaaaa
     4441 ccagttttgt ctgtattcag atggggattt attgcgcaat tatagcaggc tggcagaaga
     4501 ccagcccgaa agatgacaat gatttactta ccagaggcga tacgatcacg gatgtgttgc
     4561 gcacgctctg ttgatggtgg gtgagagtca aacatggact gggtgcgacc gccatccaga
     4621 ctagccagtt tttcaaagct gccaaccagc ccctgggtgc tgatgccacg tttcttcaac
     4681 agatcaaagg agaaatcatc tgcttcggac tctttatcac gggagtattt agcattaata
     4741 gcgccttctg cgatatcacc caattgtgag cgggaaagct gggaagccac accgctggta
     4801 gctgaaatgg catcgcgtgc ggcaacgatc gcataagaag ctttcatttc agccagcgag
     4861 tgacccaacg cgacgtggcc cagttcatgg cccagaacac cttcaatttc gttgtcattc
     4921 atcatgtcca tcaggccact gtagacacgg acacagccgt tcgccatcgc ccatgcgttg
     4981 acgtcgctgg tcatataaac cttatagttg accggcgtgc cattaatatt gttacccaat
     5041 gctttggcga tttttgccag acgtttaccg tacttgctgg atttacttgc gacttgattg
     5101 ccgctgtcca tttcggcaca gccctgattg gcaatcgctt ttgcatcggc atcgcttaat
     5161 gttgctgctt tataggcatt taaaccggag ctgatagcca tattggtatc aataccgtgg
     5221 gtattttgca ccctgtcagt aatgctgcag aggtcgcaat cgccagcagt aatttagtat
     5281 tcttcatgtg aatcatccgt tgattaatca tatataaaca ttatgtatca acaacttaca
     5341 ttgacaagcg acgctaccat taatcaaaat gactcacaag gtccgaaaaa aaacgccgac
     5401 aatgtgccga cgttttgata aagaaagatt tggctattta ttgcccgttg ttcattcagg
     5461 ctgcctggct aatccgcgcc aactgctcga aataatccgg aaatgttttg gccgtacatt
     5521 tgggatcaag aatcgtcact ggtgtatctg acaacgccac cagcgagaaa cacatcgcca
     5581 tccggtgatc attgtatgtc gcgatctcgg caaagttcag tttttccggt ggagtgatac
     5641 gaatgtaatc gtgcccctct tctacttccg caccgacttt acgcagttct gttgccatcg
     5701 caaacaggcg atcggtttct ttaacacgcc agttatagat attgcgcagc gtggtggtgc
     5761 cttttgcaaa taacgccgcc gtggcaatgg tcatcgccgc atcgggaata tggttcatat
     5821 ccatatcaat agcgttcagt tcaccacgcg tgcaggaaat ataatcatcg ccccagcaaa
     5881 tggtcgcgcc cattttttcc agcacatcag caaagcgaat atcaccctgc atactgttac
     5941 gtccaatacc ggtcactttt acagtgccgc ctttgattgc tgctgctgcc agaaagtaag
     6001 aagccgaaga tgcatcgcct tcgaccaaat aagtacccgg agactgataa gactgtccgc
     6061 cttttacgac aaattgttga tagtgctgat tttcaatttc aacaccaaac gtcttcatca
     6121 gattgagtgt gatgtcgata taaggtttag aaaccagatc gcctttaata cgaatcaccg
     6181 tatcttccgg cgcaagaggc gcagtcatta acagtgcggt gaggaattgg ctggaaacgg
     6241 agccatcaac gtcaacgttg ccgccagtaa agccgccctg taaacgcaac ggcggataat
     6301 tttcttgttc caggtaagtg atcttcgccc cgcccaggcg cagcgcatcc accagatgac
     6361 caatcgggcg ttctttcata cgcggctcac cggtcagcac aatatcattg ctacccagac
     6421 aaagagctgc cgccagcgga cgcattgccg ttccggcgtt accgaggaac aactccaggg
     6481 caccttctgc gtgtaatgga ccgccgttac cgataatttc gcaacgcgta cgatcggctg
     6541 aaagcgtata gcttacccct aacgctgtta atgcattcag catatggcgc acgtcatcgc
     6601 tatccagcag attggttaat actgttttgc cgtgtgctaa tgccgccagc aataaagcgc
     6661 ggttagaaac gctcttggaa ccgggcagat taatagtgcc atcgacacga gcgatgggtt
     6721 gtaacgtcag ggattccatg aactcaactc tctacaacag aaataaaaac cccacaggct
     6781 ggctgtgggg attaagcaaa atttcggcat taaccgtgac ggcgttcgaa ctcaaccatg
     6841 aagtctgtca gcgctttaac gccttccagc ggcatggcgt tataaataga agcgcgcatt
     6901 ccgccgacca cacggtgacc tttcagtgca tgaaggccag cagcaaaaga ctcttcaagg
     6961 aacaatttgt caagcgcact gtccgccaac tggaacggca cgttcatccg cgaacggtta
     7021 gctttcgcca cgtcattgcg gtagaaatcg ctgttatcaa tcaccccata tagcagttct
     7081 gctttttgct gattgatttt atccatttca gctacaccgc cgttcgcttt cagccattta
     7141 aagaccagac cagatagata ccaggcaaat gtcggcggcg tgttaaacat ggagccgtta
     7201 tcgttgaaga tggaataatc cagtatcgac ggacacgcga tattcgcttt gcccagcaaa
     7261 tcttcacgaa cgatgacgat tgtcaggcca gccgggccga tatttttctg cgcgccagcg
     7321 taaatcacgc cataacggct gacgtcaatc ggacgggaaa gaatggttga agagaagtcg
     7381 gcggcgacca ccacatcttt gccgaagtct ggcgtttcgt cgatggcgat accgtcgatg
     7441 gtttcattcg ggcagtaatg catataagca gcattatcag agagttgcca ttcacgcatt
     7501 ggcttaaccg cgcgcagacc atcaacagtc actttggcgt caaagacatt aggcgtgcag
     7561 tattttttcg cttctttaat ggcagttgcc gcccagtaac cggcatcaac ataatctgcg
     7621 gtggttttat caccgagaat attcagcggt accgcagcaa actgaccgcg accaccgcca
     7681 tggcagaata ataccttgta gttggagggg acattaagaa gatcgcgaaa atccttctcg
     7741 gcttcctctg caacctgaat gaactctttg ccacggtgac tcacttccat caccgacgta
     7801 ccaagaccgt tccagtcgcg cagttcctgt tgagcctgtt taagcacctc tgccggtagc
     7861 attgccggac cagaactaaa attgaagatt tgagccattt cccctcacca cgttgcgttg
     7921 ctattaaccc gcggtcaatc gattgcgacc acaggtaata cattattcct gtggctatcg
     7981 gttttatcat tcagtgacac acatcgcaat gagtaaaacc gttgagggca aaaatgtggc
     8041 ttgcatcaca caaaagaatc tctcggatta ttagcaaaaa gccgatgttt ttactgtcag
     8101 gtcacccgtt ttgcccgact tgccttcgtc cattctggat ttgcacagcg cggacataat
     8161 tgtttttccc ccgctttcat atgaatgatt tcactacaac gaatacaggc atagtccgcc
     8221 gactccggca ccactttgta acgctgcgta caatcactgg gtaaaataag taaacccggt
     8281 ttcaccttgt catcttcaaa gaaatagaca ctgatttgcc cgttggtttc gagaatcgcc
     8341 agacgtacct gccccagctg ctccacgcca cgcaatcgta gctccataaa gaactcaaat
     8401 tccgtcatgt tggagttatt gagtttcgac caggccagct cgccatcttc aataataaca
     8461 accggcttac cttccagtag atcttccagt ttttcactgt gcgccatcaa ccacattacc
     8521 aggcggtata acaacgccag agtgataaag acgataagta ccggcaccat cggcacatca
     8581 tcataaaacg ccacatctcc cgccgctgaa cccagcgtga gaatgattaa cacttcaaac
     8641 agcgacatct gtcgcacacc gcgtcttccg gtcattttga ggaacaaaaa aaccagtaca
     8701 aaggtataaa gactacgtag tgcaacttcg ccaaggaaat caaaaggcac tttatcaaat
     8761 gccatacggt ggagatcgaa cgccttcatt tttatgctct tatcgtggtt tattcgctaa
     8821 aagcatagtc aacagttcat cggcatagcg gcggtgatag cgcctttgag ataaaacccg
     8881 tattattgcg cgctttccgt acgactaaag tgattttcat gacgcaaaca tttatccccg
     8941 gcaaagatgc cgctctggaa gattccatcg ctcgcttcca gcaaaaaatt tcagacctcg
     9001 gctttcagat tgaagaggcc tcctggctga atcctgtgcc taacgtctgg tctgtacata
     9061 ttcgcgacaa agagtgcgca ctgtgtttta ccaacggtaa aggcgcaacc aaaaaagcgg
     9121 cgctggcttc tgcacttggt gaatatttcg agcgtctctc aaccaactac ttttttgctg
     9181 atttctggct gggcgaaacc atcgccaacg gtccgttcgt gcattatccc aacgaaaaat
     9241 ggttcccact gaccgaaaat gacgatgtgc cagaaggact actcgatgac cgtctgcgcg
     9301 cgttttatga tccggagaat gaactgaccg gcagcatgct gattgaccta caatccggta
     9361 acgaagatcg tggtatttgc ggcctgccgt ttacgcgtca gtccgacaat cagaccgttt
     9421 atattccgat gaatatcatt ggtaacctgt acgtctccaa cggtatgtcc gcaggtaata
     9481 cccgcaacga agcacgcgtt cagggattgt ctgaagtttt cgaacgctac gtgaaaaacc
     9541 gcattattgc tgaaagcatc agcctgccag agatcccggc agacgtgctg gcgcgttacc
     9601 cagcggtggt tgaagcgatc gaaacactgg aagcagaagg tttcccgatc ttcgcatatg
     9661 atggttccct tggcggccag tatccggtga tttgcgtggt actgttcaat cctgctaacg
     9721 gtacctgctt tgcctctttc ggtgcgcatc ctgattttgg cgtagcactg gaacgtaccg
     9781 tgaccgagct gctgcaaggt cgtggcctga aagatttgga tgtgtttact ccgccaacct
     9841 tcgatgatga agaagtcgct gaacatacca acctcgaaac gcactttatc gattccagcg
     9901 gtttaatctc ctgggacctg ttcaagcagg atgccgatta tccgtttgtg gactggaatt
     9961 tctccggcac cacggaagaa gagtttgcta cgctgatggc tatcttcaac aaagaagata
    10021 aagaagttta tattgccgat tacgagcatc tgggcgttta tgcttgccgt attatcgtgc
    10081 ctggcatgtc cgatatttat ccggctgaag atctgtggct cgcgaataac agtatgggca
    10141 gccatttacg tgaaacgatt ctttcgctac caggcagcga gtgggaaaaa gaagattacc
    10201 tgaacctcat cgagcaactg gatgaagaag gttttgatga ctttacccgc gtgcgtgagc
    10261 tgttgggtct ggcgaccggg tcggataacg gttggtacac cctgcgtatc ggtgaattaa
    10321 aagccatgct ggcgctggct ggtggcgatc tggaacaggc tctggtctgg accgaatgga
    10381 cgatggagtt taactcatca gtatttagtc cggaacgcgc caactattat cgctgcctgc
    10441 aaacgttgtt attactggca caggaagaag atcgccagcc gctgcaatat ctgaatgcgt
    10501 ttgttcgcat gtacggcgca gatgccgtgg aagccgccag tgcggcaatg agcggcgaag
    10561 cggcgtttta cggcctgcaa ccggtagata gcgatctgca cgcgtttgct gcacatcagt
    10621 cgttgttgaa ggcctacgaa aagctgcagc gcgccaaagc agcattctgg gcaaaataaa
    10681 atcaaatagc ctacgcaatg taggcttaat gattagtctg agttatatta cggggcgttt
    10741 ttctaatgcc ccgctttaca tatatttgca ttaataaaat aattgtaatt ataaggttaa
    10801 atatcggtaa tttgtattta ataaatacga tcgatattgt tactttattc gcctgatgct
    10861 cccttttaat taactatttt agcggaggat gcggaaaaaa ttcaactcat ttgttaattt
    10921 ttaaaattta tttttatttg gataatcaaa tatttactcc gtatttgcat aaaaaccatg
    10981 cgagttacgg gcctataagc caggcgagat atgatctata tcaatttctc atctataatg
    11041 ctttgttagt atctcatctc cgacttaata aagagagagt tagtgtgaaa gctgacaacc
    11101 cttttgatct tttacttcct gctgcaatgg ccaaagtggc cgaagaggcg ggtgtctata
    11161 aagcaacgaa acatccgctt aagactttct atctggcgat taccgccggt gttttcatct
    11221 caatcgcatt cgtcttctat atcacagcaa ccactggcac aggcacaatg cccttcggca
    11281 tggcaaaact ggttggcggc atttgcttct ctctggggct gattctttgt gttgtctgcg
    11341 gagccgatct ctttacttcc accgtgttga ttgttgttgc taaggcgagt gggcgcatca
    11401 cctggggtca gttggcgaaa aactggctaa atgtctattt tggcaacctg gtcggcgcac
    11461 tgctgtttgt acttttaatg tggctttccg gcgagtatat gaccgcaaat ggtcaatggg
    11521 gactaaacgt cctacaaacc gccgaccaca aagtgcacca tacttttatt gaggccgtct
    11581 gtcttggtat cctggcaaac ctgatggtat gtctggcagt atggatgagt tattctggcc
    11641 gcagcctgat ggacaaagcg ttcattatgg tgctgccggt cgcgatgttt gttgccagcg
    11701 gttttgagca cagtatcgca aacatgttta tgatcccgat gggtattgta atccgcgact
    11761 tcgcatctcc ggaattctgg accgctgtcg gttctgcacc ggaaaatttt tctcacctga
    11821 ccgtgatgaa cttcatcact gataacctga tcccggttac gatcggtaat attatcggcg
    11881 gtggtttgtt ggttgggttg acatactggg tcatttacct gcgtgaaaac gatcaccatt
    11941 aatggttgtc gaagtacgca gtaaataaaa aatccactta agaaggtagg tgttacatgt
    12001 ccgagcttaa tgaaaagtta gccacagcct gggaaggttt taccaaaggt gactggcaga
    12061 atgaagtaaa cgtccgtgac ttcattcaga aaaactacac tccgtacgag ggtgacgagt
    12121 ccttcctagc tggcgctact gaagcgacca ccaccctgtg ggacaaagta atggaaggcg
    12181 ttaaactgga aaaccgcact cacgcgccag ttgactttga caccgctgtt gcttccacca
    12241 tcacctctca cgacgcaggc tacatcaaca agcagcttga gaaaatcgtt ggtctgcaga
    12301 ctgaagctcc gctgaaacgt gctcttatcc cgttcggtgg tatcaaaatg atcgaaggtt
    12361 cctgcaaagc gtacaaccgc gaactggatc cgatgatcaa aaaaatcttc actgaatacc
    12421 gtaaaactca caaccagggc gtgttcgacg tttacactcc ggacatcctg cgttgccgta
    12481 aatctggtgt tctgaccggt ctgccagatg catatggccg tggccgtatc atcggtgact
    12541 accgtcgcgt tgcgctgtac ggtatcgact acctgatgaa agacaaactg gcacagttca
    12601 cttctctgca ggctgatctg gaaaacggcg taaacctgga acagactatc cgtctgcgcg
    12661 aagaaatcgc tgaacagcac cgcgctctgg gtcagatgaa agaaatggct gcgaaatacg
    12721 gctacgacat ctctggtccg gctaccaacg ctcaggaagc tatccagtgg acttacttcg
    12781 gctacctggc tgctgttaag tctcagaacg gtgctgcaat gtccttcggt cgtacctcca
    12841 ccttcctgga tgtgtacatc gaacgtgacc tgaaagctgg caagatcacc gaacaagaag
    12901 cgcaggaaat ggttgaccac ctggtcatga aactgcgtat ggttcgcttc ctgcgtactc
    12961 cggaatacga tgaactgttc tctggcgacc cgatctgggc aaccgaatct atcggtggta
    13021 tgggcctcga cggtcgtacc ctggttacca aaaacagctt ccgtttcctg aacaccctgt
    13081 acaccatggg tccgtctccg gaaccgaaca tgaccattct gtggtctgaa aaactgccgc
    13141 tgaacttcaa gaaattcgcc gctaaagtgt ccatcgacac ctcttctctg cagtatgaga
    13201 acgatgacct gatgcgtccg gacttcaaca acgatgacta tgctatcgct tgctgcgtaa
    13261 gcccgatgat cgttggtaaa caaatgcagt tcttcggtgc gcgtgcaaac ctggcgaaaa
    13321 ccatgctgta cgcaatcaac ggcggcgttg acgaaaaact gaaaatgcag gttggtccga
    13381 agtctgaacc gatcaaaggc gatctcctga actacgatga agtgatggag cgcatggatc
    13441 acttcatgga ctggctggct aaacagtaca tcactgcact gaacatcatc cactacatgc
    13501 acgacaagta cagctacgaa gcctctctga tggcgctgca cgaccgtgac gttatccgca
    13561 ccatggcgtg tggtatcgct ggtctgtccg ttgctgctga ctccctgtct gcaatcaaat
    13621 atgcgaaagt taaaccgatt cgtgacgaag acggtctggc tatcgacttc gaaatcgaag
    13681 gcgaataccc gcagtttggt aacaatgatc cgcgtgtaga tgacctggct gttgacctgg
    13741 tagaacgttt catgaagaaa attcagaaac tgcacaccta ccgtgacgct atcccgactc
    13801 agtctgttct gaccatcact tctaacgttg tgtatggtaa gaaaactggt aacaccccag
    13861 acggtcgtcg tgctggcgcg ccgttcggac cgggtgctaa cccgatgcac ggtcgtgacc
    13921 agaaaggtgc tgtagcgtct ctgacttccg ttgctaaact gccgtttgct tacgctaaag
    13981 atggtatctc ctacaccttc tctatcgttc cgaacgcact gggtaaagac gacgaagttc
    14041 gtaagaccaa cctggctggt ctgatggatg gttacttcca ccacgaagca tccatcgaag
    14101 gtggtcagca cctgaacgtt aacgtgatga accgtgaaat gctgctcgac gcgatggaaa
    14161 acccggaaaa atatccgcag ctgaccatcc gtgtatctgg ctacgcagta cgtttcaact
    14221 cgctgactaa agaacagcag caggacgtta ttactcgtac cttcactcaa tctatgtaat
    14281 tagatttgac tgaaatcgta cagtaaaaag cgtacaataa aggctccacg aaagtggggc
    14341 cttttttagc acgagagcct tttttgtcag ctatctatac tttaaggtga ctgccaaaac
    14401 agactcgacg tagccttcga gctgcgcacc aacacggcct cagatgggcc acatctggag
    14461 aaacaccgca atgtcagtta ttggtcgcat tcactccttt gaatcctgtg gaaccgtaga
    14521 cggcccgggt attcgcttta tcaccttttt ccagggctgc ctgatgcgct gcctgtattg
    14581 tcataaccgc gacacctggg acacgcatgg cggtaaagaa gttaccgttg aagatttgat
    14641 gaaggaagtg gtgacctatc gccactttat gaacgcttcc ggcggcggcg ttaccgcatc
    14701 cggcggtgaa gcaatcctgc aagctgagtt tgttcgtgac tggttccgcg cctgcaaaaa
    14761 agaaggcatt catacctgtc tggacaccaa cggttttgtt cgtcgttacg atccggtgat
    14821 tgatgaactg ctggaagtaa ccgacctggt aatgctcgat ctcaaacaga tgaacgacga
    14881 gatccaccaa aatctggttg gagtttccaa ccaccgcacg ctggagttcg ccaaatatct
    14941 ggcgaacaaa aatgtgaagg tgtggatccg ctacgttgtt gtcccaggct ggtctgacga
    15001 tgacgattca gcgcatcgcc tcggtgaatt tacccgtgat atgggcaacg ttgagaaaat
    15061 cgaactcctc ccctaccacg agctgggcaa acacaaatgg gtggcaatgg gtgaagagta
    15121 caaactcgac ggtgttaaac cacctaagaa agagaccatg gaacgcgtga aaggcattct
    15181 tgagcagtac ggtcataagg taatgttcta atttccccgt aaagcggcaa ctttattgag
    15241 ttgccgcttt tttattccgc gcttcattct gctacagtgt ttttaacaca ttttatagtg
    15301 catctaccat atcccgtacc tgagataata acgactgata atagctcgca tgaagttctt
    15361 ccccatcgaa taccactgta ttacacaaga aagtgacatc ggcatcttca ataccaagat
    15421 aactgcacat atttttcaaa taatcgctta tatttttttc ccagcccatc tggacaaa
//
LOCUS       DADMHM010000082        15410 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.083, whole genome shotgun sequence.
ACCESSION   DADMHM010000082 DADMHM010000000
VERSION     DADMHM010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15410)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15410)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15410
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.083"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(3..350)
                     /locus_tag="JN125_002263"
     CDS             complement(3..350)
                     /locus_tag="JN125_002263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707676.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbL family protein"
                     /protein_id="HAY8872031.1"
                     /translation="MMKKTLLLCAFLVGLVSSNVMALTLDEARTQGRVGETFYGYLVA
                     LKTDAETEKLVTDINAERKASYQQLAKQNNVSVDDIAKLAGQKLVARAKPGEYVQGIN
                     GKWVRKLVMTPTY"
     gene            complement(355..540)
                     /locus_tag="JN125_002264"
     CDS             complement(355..540)
                     /locus_tag="JN125_002264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnbE family lipoprotein"
                     /protein_id="HAY8872032.1"
                     /translation="MKILLAALTSSFMLAACTPRIEVAAPKEPITINMNVKIEHEIII
                     KADKDVEELLETRSDLY"
     gene            complement(537..3176)
                     /locus_tag="JN125_002265"
     CDS             complement(537..3176)
                     /locus_tag="JN125_002265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdbH family protein"
                     /protein_id="HAY8872033.1"
                     /translation="MLGKYKAVLALLLLIILVPLTLLMTLGLWVPTLAGIWLPLGTRI
                     ALDESPRITRKGLIIPDLRYLVGDCQLAHITNASLSHPSRWLLNVGTVEFDSACLAKL
                     PQTEQSPAAPKTLAQWQSMLPNTWINIDKLIFSPWQEWQGKLSLALTSDIQQLRYQGE
                     KVKFQGQLKGQQLTVSELDVIAFEYQPPVKLVGEFTMPLVPDGLPVSGHATATLNLPQ
                     EPSLVDAELDWQENSGQLIVLARDNGDPLLDLPWQITRQQLTVSDGRWSWPYAGFPLS
                     GRLGVKVDNWQAGLENALISGRLSVLTQGQAGKGNAVLNFGPGKLSMDNSQLPLQLTG
                     EAKQADLILYARLPAQLSGSLTDPTLAFEPGALLRSKGRVIDSLDIDEIRWPLAGVKV
                     TQRGVDGRLQAILQAHENELGDFVLHMDGLANDFLPDAGRWQWRYWGKGSFTPMNATW
                     DVAGKGEWHDSTITLTDLSTGFDQLQYGTMTVEKPRLILDKPVVWVRDAQHPSFSGAL
                     SLDAGQTLFTGGSVLPPSTLKFSVDGRDPTYFLFKGDLHAGEIGPVRVNGRWDGIRLR
                     GNAWWPKQSLTVFQPLVPPDWKMNLRDGELYAQVAFSAAPEQGFRAGGHGVLKGGSAW
                     MPDNQVNGVDFVLPFRFADGAWHLGTRGPVTLRIAEVINLVTAKNITADLQGRYPWTE
                     EEPLLLTDVSVDVLGGNVLMKQLRMPQHDPALLRLNNLSSSELVSAVNPKQFAMSGAF
                     SGALPLWLNNEKWIVKDGWLANSGPMTLRLDKDTADAVVKDNMTAGSAINWLRYMEIS
                     RSSTNINLDNLGLLTMQANITGTSRVDGKSGTVNLNYHHEENIFTLWRSLRFGDNLQA
                     WLEQNARLPGNDCPQGKECEEKQ"
     gene            3384..4373
                     /gene="ldhA"
                     /locus_tag="JN125_002266"
     CDS             3384..4373
                     /gene="ldhA"
                     /locus_tag="JN125_002266"
                     /EC_number="1.1.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-lactate dehydrogenase"
                     /protein_id="HAY8872034.1"
                     /translation="MKLAVYSTKQYDKKYLQQVNESFGFELEFFDFLLTEKTAKTANG
                     CEAVCIFVNDDGSRPVLEELKKHGVKYIALRCAGFNNVDLDAAKELGLKVVRVPAYDP
                     EAVAEHAIGMMMTLNRRIHRAYQRTRDANFSLEGLTGFTMYGKTAGVIGTGKIGVAML
                     RILKGFGMRLLAFDPYPSAAALELGVEYVDLPTLFSESDVISLHCPLTPENYHLLNEA
                     AFDQMKNGVMIVNTSRGALIDSQAAIEALKNQKIGSLGMDVYENERDLFFEDKSNDVI
                     QDDVFRRLSACHNVLFTGHQAFLTAEALTSISQTTLQNLSNLEKGETCPNELV"
     gene            4484..4906
                     /gene="hslJ"
                     /locus_tag="JN125_002267"
     CDS             4484..4906
                     /gene="hslJ"
                     /locus_tag="JN125_002267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock protein HslJ"
                     /protein_id="HAY8872035.1"
                     /translation="MKKVAAFVALSLLMAGCVSNDKIAVTPEQLQHHRFVLESVNGKP
                     VTSDKNPPEISFGEKMMISGSMCNRFSGEGKLSNGELTAKGLAMTRMMCANPQLNELD
                     NTISEMLKEGAQVDLTANQLTLATAKQTLTYKLADLMN"
     gene            complement(4903..5169)
                     /locus_tag="JN125_002268"
     CDS             complement(4903..5169)
                     /locus_tag="JN125_002268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015964583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF333 domain-containing protein"
                     /protein_id="HAY8872036.1"
                     /translation="MRAAFWVGCAALLLSACSSEPVQQATAAHVAPGLKASMSSSGEA
                     NCAMIGGSLSVARQLDGTAIGMCALPNGKRCSEQSLAAGSCGSY"
     gene            5443..8967
                     /gene="nifJ"
                     /locus_tag="JN125_002269"
     CDS             5443..8967
                     /gene="nifJ"
                     /locus_tag="JN125_002269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HAY8872037.1"
                     /translation="MITIDGNGAVASVAFRTSEVIAIYPITPSSTMAEQADAWAGNGL
                     KNVWGDTPRVVEMQSEAGAIATVHGALQTGALSTSFTSSQGLLLMIPTLYKLAGELTP
                     FVLHVAARTVATHALSIFGDHSDVMAVRQTGCAMLCAANVQEAQDFALISHIATLKSR
                     VPFIHFFDGFRTSHEINKIVPLADDTILDLMPQAEIDAHRARALNPEHPVIRGTSANP
                     DTYFQSREATNPWYNAVYDHVEQAMNDFSAATGRQYQPFEYYGHPQAERVIILMGSAI
                     GTCEEVVDELLTRGEKVGVLKVRLYRPFSAKHLLQTLPGSVRSVAVLDRTKEPGAQAE
                     PLYLDVMTALAEAFNNGKRETLPRVIGGRYGLSSKEFGPDCVLAVFAELNAAKPKARF
                     TVGIYDDVTNLSLPLPENTQPNSAKLEALFYGLGSDGSVSATKNNIKIIGNSTPWYAQ
                     GYFVYDSKKAGGLTVSHLRVSEQPIRSAYLISQADFVGCHQLQFIDKYQMAERLKPGG
                     TFLLNTPYSADEVWSRLPQEVQAVLNQKKARFYVINAAKIARECGLAARINTVMQMAF
                     FHLTQILPGDSALAELQGAIAKSYSSKGQDLVEGNWQALALARESVEEVPLQPVNPHS
                     ANRPPVVSDAAPDFVKTVTAAMLAGLGDALPVSALPPDGTWPMGTTRWEKRNIAEEIP
                     IWKEELCTQCNHCVAACPHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQV
                     APEDCTGCNLCVEVCPAKDRQNPEIKAINMMSRLEHVEEEKINYDFFLNLPEIDRSKL
                     ERIDIRTSQLITPLFEYSGACSGCGETPYIKLLTQLYGDRMLIANATGCSSIYGGNLP
                     STPYTTDANGRGPAWANSLFEDNAEFGLGFRLTVDQHRVRVLRLLDQFADKIPAELLT
                     ALKSDATPEVRREQIAALRQQLNDVAEAHELLRDADALVEKSIWLIGGDGWAYDIGFG
                     GLDHVLSLTENVNILVLDTQCYSNTGGQASKATPLGAVTKFGEHGKRKARKDLGVSMM
                     MYGHVYVAQISLGAQLNQTVKAIQEAEAYPGPSLIIAYSPCEEHGYDLALSHDQMRQL
                     TATGFWPLYRFDPRRADEGKLPLALDSRPPSEALEETLLHEQRFRRLNSQQPEVAEQL
                     WKDAAADLQKRYDFLAQMAGKAEKSNTD"
     gene            9333..10466
                     /gene="ompN"
                     /locus_tag="JN125_002270"
     CDS             9333..10466
                     /gene="ompN"
                     /locus_tag="JN125_002270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpN"
                     /protein_id="HAY8872038.1"
                     /translation="MKSKVLALLIPALLAAGAAHAAEVYNKDGNKLDLYGKVDGLHYF
                     SDNSAKDGDQSYARLGFKGETQINDQLTGYGQWEYNIQANNTESSKNQSWTRLAFAGL
                     KFADYGSFDYGRNYGVMYDIEGWTDMLPEFGGDSYTNADNFMTGRANGVATYRNTDFF
                     GLVNGLNFAVQYQGNNEGASNGQEGTNNGRDVRHENGDGWGFSTTYDLGMGFSAGAAY
                     TSSDRTNDQVNHTAAGGDKADAWTAGLKYDANNIYLATMYSETRNMTPFGDSDYAVAN
                     KTQNFEVTAQYQFDFGLRPAVSFLMSKGRDLHAAGGADNPAGVDDKDLVKYADVGATY
                     YFNKNMSTYVDYKINLLDEDDSFYAANGISTDDIVALGLVYQF"
     gene            10607..11041
                     /gene="uspF"
                     /locus_tag="JN125_002271"
     CDS             10607..11041
                     /gene="uspF"
                     /locus_tag="JN125_002271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310024.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspF"
                     /protein_id="HAY8872039.1"
                     /translation="MNRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSL
                     PYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKLPTDRVHVHVEEGSPKDRILEL
                     AKKIPAHMIIIASHRPDITTYLLGSNAAAVVRHAECSVLVVR"
     gene            11622..12512
                     /gene="sitA"
                     /locus_tag="JN125_002272"
     CDS             11622..12512
                     /gene="sitA"
                     /locus_tag="JN125_002272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707262.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter substrate-binding
                     protein SitA"
                     /protein_id="HAY8872040.1"
                     /translation="MLLGCLALTCSIAFQASATEKFKVITTFTIIADMAKNVAGDAAE
                     VSSITKPGAEIHEYQPTPGDIKRAQGAQLILANGMNLELWFQRFYQHLNGVPEVIVSS
                     GVTPVGITEGPYEGKPNPHAWMSPDNALIYVDNIRDALIKYDPANAQTYQRNADTYKA
                     KITQTLAPLRKQITELPENQRWIVTSEGAFSYLARDLGLKELYLWPINADQQGTPQQV
                     RKVVDIVKKNHIPAVFSESTISDKPARQVARETGAHYGGVLYVDSLSTENGPVPTYID
                     LLKVTTSTLVQGIKAGKREK"
     gene            12512..13339
                     /gene="sitB"
                     /locus_tag="JN125_002273"
     CDS             12512..13339
                     /gene="sitB"
                     /locus_tag="JN125_002273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter ATP-binding
                     protein SitB"
                     /protein_id="HAY8872041.1"
                     /translation="MMQSAGIVVNDVTVTWRNGHTALRDASFTVPSGSIAALVGVNGS
                     GKSTLFKAIMGFVRLTSGKISVLGIPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVM
                     MGRYGYMGMLRIAKKRDRQIVTDALERVDMVDFRHRQIGELSGGQKKRVFLARAIAQQ
                     GDVILLDEPFTGVDVKTEAKIISLLRELRAEGKTMLVSTHNLGSVTTFCDYTVMVKGT
                     VLASGPTDTTFTAENLELAFSGVLRHVTLNGSEESIITDDERPFVAHRPSAVQREAR"
     gene            13336..14193
                     /gene="sitC"
                     /locus_tag="JN125_002274"
     CDS             13336..14193
                     /gene="sitC"
                     /locus_tag="JN125_002274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter permease subunit
                     SitC"
                     /protein_id="HAY8872042.1"
                     /translation="MNVLLEPFSYEYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGD
                     ALSHSIVPGVAGAYMLGLPFSLGAFFSGGLAAGSMLFLNQRTRLKEDAIIGLIFSSFF
                     GLGLFMVSLNPTSVNIQTIVLGNILAIDPADILQLTIIGILSIIVLFFKWKDLMVTFF
                     DENHARAIGLHPGRLKILFFTLLSVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFP
                     RLLIIAVTIGSVTSFLGAWVSYFLDGATGGIIVVAQTLLFLLAFVFAPTHGLLANRRR
                     AHKALEDRS"
     gene            14190..15047
                     /gene="sitD"
                     /locus_tag="JN125_002275"
     CDS             14190..15047
                     /gene="sitD"
                     /locus_tag="JN125_002275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron/manganese ABC transporter permease subunit
                     SitD"
                     /protein_id="HAY8872043.1"
                     /translation="MMALLLEPLQFTFMSHALLISLVVSIPCALLSVFLVLKGWALMG
                     DAMSHAVFPGIVLTWILGLPLATGAFVAGVFCAVATGYLKDNSRIKQDTVMGIVFSGM
                     FAAGLILYIAIKPDVHLDHILFGDMLGITIGDIIQTVIIAGLVTLVISVKWRDFLLFS
                     FDYQQAQVSGLHTRWLHYGLLCMVSLTIVATLKAVGIILSISLLIAPGAIAVLLTQRF
                     HIALLLATGISVIVSMTGVWLSFFIDSAPAPTIVVLFAVVFIMTFTVTSINARTKGNA
                     HTQDLLSPN"
BASE COUNT         3879 a         3868 c         3728 g         3935 t
ORIGIN      
        1 tatcagtaag ttggagtcat taccaatttt cgtacccatt taccgtttat cccttgtaca
       61 tattcccccg gtttggcccg agctacgagc ttttgcccgg cgagtttcgc gatatcatct
      121 acagacacat tattttgctt tgccagttgt tggtaactcg ctttacgttc ggcattaatg
      181 tcggttacta atttctctgt ttcagcatcc gttttcagcg caaccagata accataaaat
      241 gtttccccga cccgcccctg cgttctggct tcatccagag tcaatgccat tacattgctg
      301 cttaccagcc caacaagaaa cgcacaaaga agtaatgttt tcttcatcat cgcctcagta
      361 aagatcgcta cgagtttcaa gcagctcttc gacatctttg tctgccttga tgatgatctc
      421 atgctcaatt ttaacgttca tattgatagt gatcggttcc ttgggcgcag cgacttcaat
      481 acgcggcgta caggcagcca gcataaaaga tgacgtcaac gcagccagta aaattttcat
      541 tgtttttcct cacactcttt tccttgcgga cagtcatttc ccggcagacg tgcgttctgc
      601 tccaaccatg cctggagatt atcgccaaag cgtaaactgc gccacagcgt aaaaatattc
      661 tcttcatgat ggtaattaag gtttaccgta ccgcttttac catcaacgcg actggtacct
      721 gtaatgttgg cctgcatggt taataaaccg agattatcta aattaatatt tgtcgatgaa
      781 cggctaattt ccatatagcg caaccagtta attgctgaac ccgcagtcat attgtctttc
      841 accaccgcat ctgcggtgtc tttatccagc cgcaaggtca ttggcccgct atttgccagc
      901 caaccatctt tcactatcca tttttcgttg tttagccata acggcaatgc accactaaat
      961 gccccggaca tggcgaattg tttcggattg acggcgctaa ccagttcgct ggatgagaga
     1021 ttattcagcc gcaacagcgc cgggtcatgt tgcggcatac gtaattgttt catcagtacg
     1081 ttaccgccta acacatcgac gctaacatca gtcaacagca agggttcttc ttcagtccac
     1141 ggataacgcc cttgcaaatc agccgtaata tttttcgctg tcaccagatt aatcacttcg
     1201 gcaattcgca acgtaacggg gccgcgagtc cccagatgcc aggctccatc ggcaaaacgg
     1261 aaaggcagga caaaatcgac accgttaacc tgattatctg gcatccaggc actaccgcct
     1321 ttcaacacgc cgtgccctcc cgcgcggaat ccttgttcag gcgcagcaga aaatgcaacc
     1381 tgagcataca gttcaccatc gcgtaagttc atcttccagt cgggtggcac cagcggctgg
     1441 aatacagtca gtgattgttt tggccaccag gcgttaccgc gcagacgaat accgtcccag
     1501 cgaccattta cccgaaccgg gccaatctca ccagcatgta aatcgccttt aaagaggaaa
     1561 tacgtcggat cgcgcccatc gacgctaaat tttaaggttg atggcggtaa cacactgccg
     1621 ccagtgaaca gcgtttgccc ggcgtccagt gacagcgcgc cgctgaagga gggatgctgt
     1681 gcgtcacgta cccagacgac gggcttgtcc agaattaatc gcggcttttc taccgtcatc
     1741 gtaccgtatt gtaactggtc gaaaccggtg gagaggtcgg tcagcgtaat cgtgctgtca
     1801 tgccattcac cttttcctgc gacatcccag gtggcattca tcggtgtaaa actgcctttt
     1861 ccccagtagc gccactgcca gcggcccgcg tcagggagaa aatcattcgc cagcccatcc
     1921 atatgcagca cgaaatcgcc cagttcattt tcatgcgcct gcaaaatggc ctgcaaacgt
     1981 ccgtcaacac cacgttgggt gacttttaca cccgctaaag gccagcggat ttcatcgatg
     2041 tccagcgaat cgatgactct tccctttgaa cgaagtaacg cgcctggctc aaaggccagc
     2101 gttgggtcag tcagacttcc acttagctgc gcgggtaagc gggcatataa aatgaggtcc
     2161 gcctgtttcg cttcaccggt cagctgcaga ggcagctggc tgttatccat gcttaatttt
     2221 cctgggccaa aatttagcac cgcgttacct ttacccgctt gcccctgggt cagcacactc
     2281 agtcgtccgc tgatcagagc gttctcaagc cctgcctgcc agttgtcgac tttgacaccc
     2341 agtcggccac tcaaaggaaa acctgcatac ggccaactcc agcgaccatc gcttacggtc
     2401 aattgttgac gagtaatttg ccacggcaaa tcgagcaacg gatcgccgtt atcacgtgcc
     2461 agcacaatca attgcccgct attttcctgc cagtccagct ctgcatccac cagtgacggt
     2521 tcctgcggca agtttaacgt cgcagtagca tgcccactta caggaagtcc atccggcacg
     2581 agcggcatag taaattcccc caccagttta accggcggct gatattcaaa cgcgatgaca
     2641 tccagttcgc tgactgtaag ttgttgccct ttcagctggc cttgaaattt aactttttcg
     2701 ccctgataac gcagttgctg gatatcagag gttaatgcga gagagagttt tccctgccat
     2761 tcctgccagg gagaaaaaat cagtttatcg atattgatcc aggtgttagg cagcatggac
     2821 tgccactgcg cgagggtttt tggagcagct ggcgattgct ccgtctgcgg caatttcgcc
     2881 agacaagcag aatcaaattc taccgtgccg acgttcaata accagcggct gggatgtgaa
     2941 aggctggcgt tggtgatatg cgcaagctga caatctccca ccagataacg gagatcggga
     3001 atgattaaac ctttacgcgt aatgcgtggg ctttcatcta atgcaatacg tgtcccgagc
     3061 ggtagccaga tgcccgccag cgtgggaacc cacagcccga gcgtcatcag cagcgtcaac
     3121 ggcacaagaa taatcagtaa taacagcgcg agaacggctt tatatttacc cagcatgggt
     3181 agttaatatc ctgatttagc gaaaaattaa gcattcaata cgggtattgt ggcatgttta
     3241 accgttcagt tgaaggttgc gcctacacta agcatagttg ttgatgaatt tttcaatatc
     3301 gccatggttt tcaattatat ttgaaatttt gtaaaatatt tttagtggct taaatgtgat
     3361 tcaacatcac tggagaaagt cttatgaaac tcgccgttta tagcacaaaa cagtacgaca
     3421 agaagtacct gcaacaggtg aacgagtcct ttggctttga gctggaattt tttgactttc
     3481 tgctgacgga aaaaaccgct aaaactgcca atggctgcga agcggtatgt attttcgtaa
     3541 acgatgacgg cagccgcccg gtgctggaag agctgaaaaa gcacggcgtt aaatatatcg
     3601 ccctgcgctg tgccggtttc aataacgtcg accttgatgc ggcaaaagaa ctggggctga
     3661 aagtagtccg tgttccagcc tatgatccag aggccgttgc tgaacacgcc atcggtatga
     3721 tgatgacgct gaaccgccgt attcaccgcg cgtatcagcg tacccgtgac gctaacttct
     3781 ctctggaagg tctgaccggc tttactatgt atggcaaaac ggcaggcgtt atcggtaccg
     3841 gtaaaatcgg tgtggcgatg ctgcgcattc tgaaaggttt tggtatgcgt ctgctggcgt
     3901 tcgatccgta tccaagtgca gcggcgctgg aactcggtgt ggagtatgtc gatctgccaa
     3961 ccctgttctc tgaatcagac gttatctctc tgcactgccc gctgacaccg gaaaactacc
     4021 atctgttgaa cgaagccgcc ttcgatcaga tgaaaaatgg cgtgatgatc gtcaatacca
     4081 gtcgcggtgc attgattgat tctcaggcag caattgaagc gctgaaaaat cagaaaattg
     4141 gttcgttggg tatggacgtg tatgagaacg aacgcgatct gttctttgaa gataaatcca
     4201 acgacgtgat ccaggatgac gtattccgtc gcctgtctgc ctgccacaac gtgctgttta
     4261 ccgggcacca ggcattcctg acagcagaag ctctgaccag tatttctcag actacgctgc
     4321 aaaacttaag caatctggaa aaaggcgaaa cctgcccgaa cgaactggtt taatgttgca
     4381 gctcccctgc aatccagggg agctgattca gataatcccc aatgaccttt cattctctat
     4441 tcttaaaata gtcctgagtc agaaactgta attgagaacc acaatgaaga aagtagccgc
     4501 gtttgttgcg ctaagcctgc tgatggcggg atgtgtaagt aatgacaaaa ttgctgttac
     4561 gccagaacag ctacagcatc atcgctttgt gctggaaagc gtaaacggta agcccgtgac
     4621 cagcgataaa aatccgccag aaatcagctt tggtgaaaaa atgatgattt ccggcagcat
     4681 gtgtaaccgc tttagcggtg aaggcaaact gtctaatggt gaactgacag ccaaagggct
     4741 ggcaatgacc cgtatgatgt gcgctaaccc gcagcttaat gaactcgata acaccattag
     4801 cgaaatgctg aaagaaggtg cacaagtgga tctgaccgcg aaccagttaa cgctggcgac
     4861 cgcgaaacag acattaactt ataagctggc ggatttaatg aattaatagc tgccacagct
     4921 cccggcggca agtgactgtt cgctacagcg tttgccgttg ggtaatgcac acatcccaat
     4981 cgccgtgcca tccagttgac gggcaacaga aagcgaaccg ccgatcattg cacaatttgc
     5041 ttctccacta ctggacatcg acgcttttaa acctggcgct acgtgcgccg cagtcgcctg
     5101 ctgaacaggt tcactactac acgccgacaa caataaagcg gcacacccta cccaaaacgc
     5161 tgctcgcatc ttttcttcct ctgatcttca agccaaacga caccgccata aataataggc
     5221 agcacagagg gcgacatcga gagctgtcct gcgcgttgcc ccgcattttt acttttttat
     5281 ggctattttt ttgccctctg tttgatcaaa acattcatta cgctgatgtg ggggacacaa
     5341 aagcgaaaat gcagaagaaa gccatttgct aaaattgaaa gattactact gggcgcgcag
     5401 caatttcgtg cgcccctcat ttgcgcaatg taagggtgtc atatgattac tattgacggt
     5461 aatggcgcgg ttgcttcggt ggcgtttcgc accagtgaag ttatcgccat ctaccctatt
     5521 acccccagtt ccacgatggc agaacaggct gatgcctggg ccggaaacgg cttgaagaac
     5581 gtttggggag acacaccacg cgtggttgaa atgcagtcgg aagcgggtgc tatcgctacc
     5641 gtgcatggcg ctttgcagac gggtgccctt tcaacatcgt ttacgtcatc gcagggtttg
     5701 ctgctgatga tcccgacact gtacaaactg gcaggcgaac tcacaccgtt tgtcctgcat
     5761 gtagcggcac gtaccgttgc cacacatgca ctctctattt ttggcgatca ttccgacgtc
     5821 atggcggtgc gccagacggg ttgcgcgatg ttgtgtgcgg caaacgtcca ggaagcgcaa
     5881 gactttgctc tcatttcgca catcgcgacg ctgaaaagcc gcgtgccatt tattcatttc
     5941 tttgatggtt tccgcacgtc ccacgaaatc aataaaattg tcccgctggc cgatgacacg
     6001 attcttgatc tcatgccgca ggccgaaatt gatgctcatc gcgcccgggc gctcaacccg
     6061 gaacatccgg tgatccgtgg tacgtccgcc aatcctgaca cttatttcca gtctcgcgaa
     6121 gccaccaacc cctggtacaa cgcagtctat gaccatgttg aacaggcgat gaatgatttc
     6181 tctgccgcga caggtcgtca gtatcagccg tttgaatatt acgggcatcc gcaagctgaa
     6241 cgggtgatta tcctgatggg ctcagccatt ggcacctgtg aagaagtggt tgatgaattg
     6301 ctaacccgtg gcgaaaaagt cggcgtgctg aaagttcgcc tgtaccgccc cttctcagcc
     6361 aaacacttgc tacaaactct accgggatcc gtacgcagcg tggcggtact ggacagaacc
     6421 aaagaacccg gtgcccaggc agaaccgctc tatctggatg tgatgaccgc actggcagaa
     6481 gcctttaata atggcaagcg cgaaactctg ccccgtgtca ttggtgggcg ctatggtctt
     6541 tcatccaaag aatttggccc ggactgtgta ctggcggtat ttgccgagct caacgcggct
     6601 aaaccgaaag cgcgctttac ggttggtatt tacgatgatg taaccaatct gtccctgccg
     6661 ttgccggaaa acacccagcc aaactcggcg aaacttgaag ccttgtttta tggccttggt
     6721 agtgatggca gcgtttccgc gaccaaaaac aatatcaaga ttatcggtaa ttccacgccg
     6781 tggtacgcac agggctattt tgtttacgac tccaaaaaag cgggcggcct gacggtttct
     6841 caccttcgcg tgagcgaaca gccgattcgt tccgcttatc tcatttccca ggctgatttt
     6901 gttggctgcc accagttgca gtttatcgat aaatatcaga tggctgagcg tttaaaacct
     6961 ggcggcactt tcctgctcaa cacgccgtac agcgcagatg aagtgtggtc gcgcttgccg
     7021 caagaagttc aggccgtgtt aaaccagaaa aaagcgcgct tctatgtgat taacgcggcg
     7081 aaaatcgccc gcgaatgtgg cctggcggcc cgtattaata ccgtcatgca gatggctttt
     7141 ttccatctga cgcaaattct gcctggcgat agcgccctcg cagaattgca gggtgcgatt
     7201 gccaaaagtt acagtagcaa aggccaggat ctggtggaag gcaactggca ggctctggcg
     7261 ctggcgcgtg aatccgtaga agaagttccg ttgcaaccgg taaatccgca cagcgccaat
     7321 cgaccgccag tggtttccga tgccgcccct gatttcgtga aaaccgtaac cgcagcgatg
     7381 ctcgcagggc ttggtgatgc cctccccgtt tcggcgctgc cgccagacgg cacctggccg
     7441 atggggacca ctcgctggga aaaacgcaat atcgccgaag agatccccat ctggaaagag
     7501 gaactctgta cccaatgtaa ccactgcgtc gccgcttgcc cacactcagc tattcgcgca
     7561 aaagtggtac cacccgaagc gatggaaaac gcccctgcca gcctgcattc gctggatgtg
     7621 aaatcgcgtg atatgcgcgg gcagaaatat gtcttgcagg tggctccgga agattgcacc
     7681 ggttgtaacc tgtgcgtcga agtttgcccg gcgaaagacc gtcagaatcc agagattaaa
     7741 gccatcaata tgatgtcgcg cctggaacat gtcgaagaag agaaaatcaa ttacgatttc
     7801 ttcctcaacc tgccagaaat cgaccgtagc aaactggaac gtattgatat tcgtacatcg
     7861 cagctgatta caccgctgtt tgaatattcc ggtgcttgct ccggttgtgg cgagacgccg
     7921 tatattaaat tgctgactca gctctatggc gaccggatgt tgatcgctaa cgccaccggc
     7981 tgttcttcaa tttatggcgg taacctgccc tctacaccgt ataccaccga tgccaacggt
     8041 cgtgggccgg catgggcgaa ctctctattt gaagataatg ccgaatttgg ccttggtttc
     8101 cgcctgacgg tcgatcaaca ccgtgtccgc gtgctgcgtc tgctggatca atttgccgat
     8161 aaaatcccgg cggaattact gacggcgttg aaatcagacg ctacgccaga ggttcgtcga
     8221 gaacagatcg cagctttacg ccagcaactc aacgatgttg ccgaagcaca tgaactgcta
     8281 cgtgatgcag atgcactggt ggaaaaatca atctggctga ttggtggtga tggctgggct
     8341 tacgatatcg gctttggcgg tctggatcat gtattgagtt tgacggaaaa cgtcaacatt
     8401 ctggtgctgg atacgcaatg ctattccaac accggtggtc aggcgtcgaa agcgacaccg
     8461 ctgggtgcag taactaaatt tggcgagcac ggcaaacgta aagcgcgtaa agatcttggc
     8521 gtcagtatga tgatgtacgg tcatgtttat gtggcgcaga tttctctcgg cgcgcagctg
     8581 aaccagacgg tgaaagcgat tcaggaagcg gaagcgtatc cgggaccatc gctgatcatt
     8641 gcttatagcc cgtgtgaaga gcatggttac gatctggcac tcagccatga ccagatgcgc
     8701 caactcacag ctaccggctt ctggccgcta tatcgcttcg atcctcgtcg tgccgatgaa
     8761 ggcaaactgc cgctggcgct ggattcacgc ccgccgtcag aagcactgga agaaacgtta
     8821 cttcacgagc aacgtttccg tcgtctgaat tcgcagcagc cagaagtggc agaacagtta
     8881 tggaaagatg ctgcagctga tttgcaaaaa cgctatgact tcctggcaca aatggccgga
     8941 aaagcggaaa aaagcaacac cgattaaatg ctctggataa ggattatcca attctaaaaa
     9001 aaagcccgga cgactgttcg ggcttgtctt tttatatgtt ggaaaatcag tggcaatgca
     9061 atggcccaac agaaaataaa atctgtgaca ataaaggcat ataacccgcg cagaataacg
     9121 tatagaaaat taaaagtata atttttattt tgtatgtatt atcttcgata cattcaccag
     9181 acttattatc atttcagaag aattatttga ttaaggtttt acttaaggcg taacaaatga
     9241 tatttatcgg ctaactgaac ttctccttta ggatgttttc actccccgga atggggataa
     9301 aaggcaaata aaataactaa aggatttatt caatgaaaag caaagtactg gcacttttaa
     9361 ttcctgccct gctcgccgca ggtgctgcac atgcagccga agtttataat aaagacggca
     9421 acaaattaga tctgtatggc aaagttgatg gcctgcatta tttttctgat aattcagcga
     9481 aagatggcga tcagagctat gcgcgtctgg gttttaaagg cgaaacccaa attaacgatc
     9541 aactcactgg ctacggtcaa tgggaataca atattcaggc aaacaacact gaatcttcaa
     9601 aaaaccagtc atggacccgt ctggcatttg ccgggctgaa atttgcagat tacggttctt
     9661 tcgattacgg acgtaattat ggcgtaatgt acgacatcga aggctggaca gatatgctgc
     9721 ctgaatttgg cggtgactct tataccaatg cagacaactt tatgactggt cgagccaatg
     9781 gcgtcgcgac ttatcgtaat actgatttct tcggtctggt aaatggtctg aacttcgcgg
     9841 tgcagtatca aggtaacaac gaaggagcca gtaatggtca ggaaggcacc aacaacggac
     9901 gtgatgttcg ccatgaaaac ggtgacggct ggggtttttc cacaacatat gatttaggca
     9961 tgggctttag cgctggtgcg gcatacacct cttctgaccg caccaatgac caggttaacc
    10021 atactgcggc gggtggtgat aaagcagacg cgtggactgc tgggctaaaa tacgatgcta
    10081 acaatattta cctggcaacc atgtattcag aaacgcgtaa tatgaccccg tttggcgaca
    10141 gcgattatgc tgtggcaaac aaaacccaga attttgaagt cactgcccag taccagtttg
    10201 attttggtct gcgtccggca gtctctttcc tgatgtctaa aggccgtgac ctgcacgctg
    10261 ccggtggtgc agacaacccg gcaggtgttg atgataaaga tctggttaaa tacgccgatg
    10321 ttggcgcgac ttactatttc aataaaaaca tgtccaccta cgttgactat aaaatcaacc
    10381 tgttggatga agatgacagc ttctacgctg ccaatggcat ctctaccgat gatattgtcg
    10441 ctttaggtct ggtttatcag ttctaaatcc tcctgcccgc tgttatggcg ggctttttct
    10501 gcttattctt cctcctttga tctaaattaa aaatgtgaac tccatcatta cacaaaaagt
    10561 gtcatctggc gttacacttt atgcggatac taaaacagga ggttttatga acagaacgat
    10621 tcttgtccct atcgatattt ccgattcaga attaactcaa cgcgtgatta gccacgttga
    10681 ggcagaggca aagattgacg atgcagaggt tcatttcctg acggtaatac cttcactgcc
    10741 ctactatgcc tctctgggtt tagcgtattc cgcagaatta ccggcaatgg atgacctgaa
    10801 agcggaagcc aaatcgcaac tggaagagat cattaaaaaa tttaaactgc caaccgacag
    10861 agtgcatgtc catgttgagg aaggctcgcc caaagaccgc attctggaat tggcgaagaa
    10921 gatccccgct catatgatca tcattgcttc ccatcgaccg gatatcacca cttatctgct
    10981 cggttccaac gccgcagctg tagtgcgtca cgcagagtgc tccgtgctgg ttgtgcgctg
    11041 acactaacgc ccgcacattg ctgcgggctt tttgattcat ttcgcaaatg tgctgacatt
    11101 ttcccctcta atccgtacca tacacgccac tgtttttata tcagatttct tatgctgggc
    11161 attccggcat gacgcatact cttctgatgc catataacga attgagtcgc ttttaaatgt
    11221 cgcaaaatca agaaattagt aagaaagaac aatacaacct gaacaagtaa gggcaaaaat
    11281 cacaactatc tgactcataa gtattttatt tatttttcaa tatgttaaac attatcagcg
    11341 acaacaataa gctacgataa cccactcttt ttttgcccca tttttgccat caacaatttt
    11401 cctcataaag tcatttcaaa gcctaatagc tgctctactt ttttcctcaa tatcatgtcg
    11461 ccagtaggaa acaacctaat ccctgtttta ggcctcaaag ctgttaatga taattatttt
    11521 cattttgtat aggttatgct ataaaacata gctgttgcta tgtttgttct aattttgctc
    11581 actataggta ctaaattatg cactcaataa aaaaagtaac catgctcttg gggtgcctcg
    11641 ccctcacctg ctcgatcgca tttcaggcaa gtgcaactga aaaattcaag gtcattacaa
    11701 catttaccat catcgcggat atggccaaaa acgtggctgg agatgctgca gaagtctcat
    11761 ccataaccaa gcctggtgca gaaattcatg agtatcagcc tacccctggc gatattaaac
    11821 gtgcacaggg ggcacaactg attctcgcca atggtatgaa tctggaattg tggttccaac
    11881 gcttttacca gcatctcaat ggggttccag aagtaattgt ctcttcgggt gtgacgccag
    11941 tagggatcac cgaaggaccc tatgagggca aacctaatcc ccatgcatgg atgtcgccag
    12001 ataatgctct gatttacgtc gataatattc gtgatgcgtt gataaaatac gatccggcaa
    12061 atgcacaaac ctaccaacgt aatgccgata cttataaagc caagattacc caaacccttg
    12121 cccccctgcg taagcagatt acggaactcc ctgagaatca gcgatggatt gtcaccagtg
    12181 aaggggcttt ttcttatctc gcacgcgatt tggggctaaa agagctttat ctgtggccga
    12241 ttaatgccga tcaacaagga acaccgcagc aggtacgtaa ggttgttgat atagttaaga
    12301 aaaatcatat cccggcagtc tttagcgaga gtacgatttc cgataaacca gcgcgtcagg
    12361 ttgcgcgtga aaccggcgca cactacggcg gtgtgctcta tgtcgattcc ctgagcacag
    12421 aaaacggccc ggtacctacg tatatcgacc ttcttaaggt tactaccagt acgctggtac
    12481 agggaattaa agccgggaaa agggagaaat aatgatgcaa tctgcaggca ttgtcgttaa
    12541 tgatgttact gtcacctggc gtaacgggca cacagcactg cgcgatgcat ccttcacagt
    12601 accaagtgga tctattgccg ctctggttgg ggtaaacggt tccggaaaat cgacgttgtt
    12661 taaagcgatt atgggatttg tgcgtctgac cagcggaaag atatctgttc tgggtattcc
    12721 cacgcgacag gcgctacaga aaaacctggt tgcctacgtc cctcagtcag aagaggttga
    12781 ctggtcgttt cctgtactgg tggaagatgt ggtgatgatg ggccgctatg ggtatatggg
    12841 tatgttgcgt atagccaaaa agagggatcg tcagattgtc accgatgcgc tggaacgtgt
    12901 cgatatggtg gattttcgcc atcgtcaaat cggcgagctt tccggtggac aaaagaaacg
    12961 cgtctttctg gcgagagcga ttgcacagca gggtgatgtg atcctgctgg atgaaccttt
    13021 taccggcgtt gatgtgaaaa ccgaagcgaa aatcatcagc ctgttgaggg agttacgcgc
    13081 ggaaggcaaa acgatgcttg tctcaacgca caatctcggc tcagtcacga cattttgcga
    13141 ttatacggtc atggtcaaag gcaccgtcct ggcaagcggg ccgacagaca ccacttttac
    13201 agccgagaac ctggagctgg cttttagcgg cgtactgcgc catgtcacac ttaacggctc
    13261 ggaagaaagc attattactg acgatgaacg cccttttgtg gcacatcgac cgtcagcggt
    13321 gcagagggaa gcaagatgaa cgtgctactg gaacccttca gctatgaata tatgctcaat
    13381 gcgatgtggg tctcggcaat ggtcggcggt ctctgcgctt tcctgtcatg ctatctgatg
    13441 ctaaaaggct ggtcgctgat tggcgatgcg ctgtcgcact ctattgtccc gggtgttgcg
    13501 ggggcatata tgctggggct tccgttttct ctgggagcct tcttttccgg cggactggca
    13561 gcgggcagca tgctgtttct taaccaacgc acccgcttaa aagaagatgc catcatcggc
    13621 ctgatcttct cgtccttttt tggcctgggg ctgtttatgg tgtcattgaa cccgacatcc
    13681 gtgaacattc agaccatcgt cctgggcaat attctggcaa tcgatccggc ggatatcctg
    13741 caactcacta tcattggcat tctctcgatc atcgtgcttt ttttcaaatg gaaagatctt
    13801 atggtgacct ttttcgacga gaatcacgcc cgtgctattg gattacatcc gggcagatta
    13861 aaaatcctct tcttcaccct gctgtcggtt tcgaccgttg cggcgctgca aacggttggt
    13921 gcctttctgg tgatctgtct ggtggtgact cccggtgcaa cagcatggtt gttaaccgat
    13981 cgttttcccc gcctgctcat aattgctgta actattggca gtgtaaccag tttcctcggc
    14041 gcgtgggtca gttactttct ggacggcgcg acaggtggaa tcatcgtggt ggcgcagaca
    14101 ctgctgtttc ttttagcatt tgtatttgcg cccacccatg gacttttggc aaatcgtcgg
    14161 cgtgcgcata aagcgctgga ggatcgctca tgatggcatt attactggag ccactgcagt
    14221 tcacctttat gagtcacgca ctgctgattt cactggtagt ttccataccc tgtgcgctgc
    14281 tgtcggtctt tctggtcctg aaaggttggg cactgatggg tgacgcgatg agtcatgcgg
    14341 tttttcctgg catcgtgctt acctggattc tggggttacc tctggctaca ggggcattcg
    14401 tcgccggagt attctgcgcg gtggcgacgg gatacctgaa agacaacagc cgaatcaagc
    14461 aagatacagt tatggggatt gttttttctg gcatgtttgc cgcaggtctg atcttgtata
    14521 ttgcaatcaa accagacgta catcttgacc atattctttt cggcgacatg ctcgggataa
    14581 ccatcggcga tataatccag acggtgatta ttgccgggct ggttacactt gttattagcg
    14641 taaaatggcg ggattttttg ctgttcagct ttgattatca acaggcgcag gtaagcggtt
    14701 tgcatacgag atggctgcat tatgggctgc tgtgcatggt ttccctgacc attgtggcga
    14761 cgctgaaagc agtaggtatc attctctcta tttctctgct cattgcgcct ggcgccattg
    14821 cagtactcct gacacaacgc tttcatattg cgctcctact ggcgactggc atatcggtaa
    14881 tagtgtcaat gactggtgtc tggctgtcct tttttatcga cagcgcacca gctccgacga
    14941 ttgtcgtctt attcgcggtc gtgttcatca tgacgtttac cgttaccagc atcaacgcac
    15001 gcacaaaggg aaacgcccat acacaggatc tgttatcacc caattagcac aatatccgag
    15061 gacagcatcg tccgccagcc tacagaagtc cggaaagcca tggaaggtcg ttgggaggag
    15121 gtacgaattc tatcatgcaa aaaatacgta aaatcgataa cgcctagaaa tcattcaata
    15181 ctcgcactat cgaaagttta ccagccaacc gcggcacgtt cctgcatacg acgtgccgca
    15241 gcttctgtta ttccacgata aaattcctaa ccgaattcaa atccttcaga ctattcagct
    15301 cttccttcag ctcccgctga cggcgataaa tcgtaagcgc cccgagaagt acgtagcgta
    15361 aggattattt tacagacgag aagttccagg gcagcagttc atgcacttgg
//
LOCUS       DADMHM010000083        15309 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.084, whole genome shotgun sequence.
ACCESSION   DADMHM010000083 DADMHM010000000
VERSION     DADMHM010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15309)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15309)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15309
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.084"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(74..4534)
                     /gene="mukB"
                     /locus_tag="JN125_002276"
     CDS             complement(74..4534)
                     /gene="mukB"
                     /locus_tag="JN125_002276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukB"
                     /protein_id="HAY8872044.1"
                     /translation="MIERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTM
                     AAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQRVVV
                     GVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLPLNELKDKLEAM
                     EGVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLR
                     DYLLPENSGVRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLISEATNYVAADYMR
                     HANERRVHLDKALEFRRELHTSRQQLAAEQYKHVDMARELAEHNGAEGDLEADYQAAS
                     DHLNLVQTALRQQEKIERYEADLDELQIRLEEQNEVVAEAIERQEENEARAEAAELEV
                     DELKSQLADYQQALDVQQTRAIQYNQAIAALNRAKELCHLPDLTADSAAEWLETFQAK
                     ELEATEKMLSLEQKMSMAQTAHSQFEQAYQLVVAINGPLARNEAWDVARELLREGVDQ
                     RHLAEQVQPLRMRLSELEQRLREQQEAERLLADFCKRQGKNFDIDELEALHQELEARI
                     ASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFTS
                     SQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLSQPGGSEDQRLNALAERFG
                     GVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQVTEHLDGLTDCPEDLYLIEGD
                     PQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPEVPLFGRAARESRIESLHAEREVLS
                     ERFATLSFDVQKTQRLHQAFSRFIGSHLAVVFESDPEAEIRQLNSRRVELERALSNHE
                     NDNQQQRIQFEQAKEGVTALNRILPRLNLLADDSLADRVDEIRERLDEAQEAARFVQQ
                     FGNQLAKLEPIVSVLQSDPEQFEQLKEDYAYSQQMQRDARQQAFALTEVVQRRAHFSY
                     SDSAEMLSGNSDLNEKLRERLEQAEAERTRAREALRGHAAQLSQYNQVLASLKSSYDT
                     KKDLLNDLQRELQDIGVRADSGAEERARIRRDELHAQLSNNRSRRNQLEKALTFCEAE
                     MDNLTRKLRKLERDYFEMREQVVTAKAGWCAVMRMVKDNGVERRLHRRELAYLSADDL
                     RSMSDKALGALRLAVADNEHLRDVLRMSEDPKRPERKIQFFVAAYQHLRERIRQDIIR
                     TDDPVEAIEQMEIELSRLTEELTSREQKLVISSRSVANIIRKTIQREQNRIRMLNQGL
                     QNVSFGQVNSVRLNVNVRETHAMLLDVLSEQHEQHQDLFNSNRLTFSEALAKLYQRLN
                     PQIDMGQRTPQTIGEELLDYRNYLEMEVEVNRGSDGWLRAESGALSTGEAIGTGMSIL
                     VMVVQSWEDESRRLRGKDISPCRLLFLDEAARLDARSIATLFELCERLQMQLIIAAPE
                     NISPEKGTTYKLVRKVFQNTEHVHVVGLRGFAPQLPETLPGTDEAPSQAS"
     gene            complement(4534..5238)
                     /gene="mukE"
                     /locus_tag="JN125_002277"
     CDS             complement(4534..5238)
                     /gene="mukE"
                     /locus_tag="JN125_002277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415443.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukE"
                     /protein_id="HAY8872045.1"
                     /translation="MSSTNIEQVMPVKLAQALANPLFPALDSALRSGRHIGLDELDNH
                     AFLMDFQEYLEEFYARYNVELIRAPEGFFYLRPRSTTLIPRSVLSELDMMVGKILCYL
                     YLSPERLANEGIFTQQELYDELLTLADEAKLLKLVNNRSTGSDVDRQKLQEKVRSSLN
                     RLRRLGMVWFMGHDSSKFRITESVFRFGADVRAGDDPREAQRRLIRDGEAMPIENHLQ
                     LNDETEENQPDSGEEE"
     gene            complement(5219..6541)
                     /gene="mukF"
                     /locus_tag="JN125_002278"
     CDS             complement(5219..6541)
                     /gene="mukF"
                     /locus_tag="JN125_002278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005123549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partition protein MukF"
                     /protein_id="HAY8872046.1"
                     /translation="MSEFSQTVPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLD
                     GEMSEGELVDAFRHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYR
                     LTPLGIGITDYYIRQREFSTLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPL
                     KYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL
                     QDTLEAAGDKLQANLLRIQDATMPHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIG
                     YDRHVHKFIRTAIDMDKNRVFAQRLRQSVQTYFDEPWALTYANADRLLDMRDEEMALR
                     DEEVTGELPEDLEYEEFNEIREQLAAIIEEQLAVYKTRQVPLDLGLVVREYLSQYPRA
                     RHFDVARIVIDQAVRLGVAQADFTGLPAKWQPINDYGAKVQAHVIDKY"
     gene            complement(6538..7323)
                     /gene="cmoM"
                     /locus_tag="JN125_002279"
     CDS             complement(6538..7323)
                     /gene="cmoM"
                     /locus_tag="JN125_002279"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine 5-oxyacetic acid(34)
                     methyltransferase CmoM"
                     /protein_id="HAY8872047.1"
                     /translation="MQDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEMGPQ
                     KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAA
                     QDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNM
                     VAGNFDYVQAGMPKKKKRTLSPDYPRDPAQVYLWLEEAGWQIMGKTGVRVFHDYLREK
                     HQQRDCYEALLELETRYCRQEPYITLGRYIHVTARKPQSKDKV"
     gene            7459..8238
                     /gene="elyC"
                     /locus_tag="JN125_002280"
     CDS             7459..8238
                     /gene="elyC"
                     /locus_tag="JN125_002280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706838.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope biogenesis factor ElyC"
                     /protein_id="HAY8872048.1"
                     /translation="MLFTLKKVIGNMLLPLPLMLLIIGAGLALLWFSRFQKTAKIFIS
                     IGWLALLLLSLQPVADRLLRPIESTYPTWNNSQKVDYIVVLGGGYTWNPQWAPSSNLI
                     NNSLPRLNEGIRLWRENPGSKLIFTGGVAKTNTVSTAEVGARVAQSLGVPREQIITLD
                     LPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRAMIFFQQEGLNPLPAPANQLAIDSPL
                     NPWERAIPSPVWLMHSDRVGYETLGRIWQWLKGPSGEPRQE"
     gene            complement(8215..9108)
                     /locus_tag="JN125_002281"
     CDS             complement(8215..9108)
                     /locus_tag="JN125_002281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcbJ family phosphotransferase"
                     /protein_id="HAY8872049.1"
                     /translation="MEQLRAELSHLLGEKLSRIECVNEKADTALWALYDSQGNPMPLM
                     ARSFSTPGKARQLAWKTTMLARSGTVRMPTIYGVMTHEEHPGPDVLLLERMRGVSVEA
                     PARTPERWEQLKDQIVEALLAWHRQDSRGCVGAVDNTQENFWPSWYRQHVEVLWTTLN
                     QFNNTGLTMQDKRILFRTRECLPALFEGFNDNCVLIHGNFCLRSMLKDSRSDQLLAMV
                     GPGLMLWAPREYELFRLMDNSLAEDLLWSYLQRAPVAESFIWRRWLYVLWDEVAQLVN
                     TGRFSRRNFDLASKSLLPWLA"
     gene            complement(9262..10008)
                     /gene="kdsB"
                     /locus_tag="JN125_002282"
     CDS             complement(9262..10008)
                     /gene="kdsB"
                     /locus_tag="JN125_002282"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HAY8872050.1"
                     /translation="MSFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAER
                     IIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEP
                     MIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATI
                     PWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQASPLEHIEMLEQLRVLWYG
                     EKIHVAVAQEVPGTGVDTPEDLERVRAEMR"
     gene            complement(10005..10187)
                     /locus_tag="JN125_002283"
     CDS             complement(10005..10187)
                     /locus_tag="JN125_002283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YcaR"
                     /protein_id="HAY8872051.1"
                     /translation="MDHRLLEIIACPVCNGKLWYNQEKQELICKLDNLAFPLRDGIPV
                     LLETEARVLTADESKS"
     gene            complement(10239..11471)
                     /locus_tag="JN125_002284"
     CDS             complement(10239..11471)
                     /locus_tag="JN125_002284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HAY8872052.1"
                     /translation="MSLPHLSLADARNLHLAAQGLLNKPRRRASLEDIPATISSMSLL
                     QIDTINIVARSPYLVLFSRLGNYPAQWLDESLARGELMEYWAHEACFMPRSDFRLIRH
                     RMLAPEKMGWKYKDAWMQEHEAEIAQLIQHIHDKGPVRSADFEHPRKGASGWWEWKPH
                     KRHLEGLFTAGKVMVIERRNFQRVYDLTHRVMPDWDDERDLVSQTEAEIIMLDNSARS
                     LGIFREQWLADYYRLKRPALAAWREARAEQQQIIAVHVEKLGNLWLHADLLPLLERAL
                     AGKLTATHSAVLSPFDPVVWDRKRAEQLFDFSYRLECYTPAPKRQYGYFVLPLLHRGQ
                     LVGRMDAKMHRQTGILEVISLWLQEGIKPTTMLQKGLRQAITDFASWQQATRVTLGRC
                     PQGLFTDCRTGWEIDPVA"
     gene            complement(11508..12494)
                     /gene="lpxK"
                     /locus_tag="JN125_002285"
     CDS             complement(11508..12494)
                     /gene="lpxK"
                     /locus_tag="JN125_002285"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HAY8872053.1"
                     /translation="MIEKIWSGESPLWRLLLPLSWLYGLVSGAIRLCYKLKLKRAWRA
                     PVPVVVVGNLTAGGNGKTPVVVWLVEQLQQRGIRVGVVSRGYGSKAESYPLLLSADTT
                     TAQAGDEPVLIYQRTDAPVAVSPVRSDAVKAILAQHPDVQIIVTDDGLQHYRLARDVE
                     IVVIDGVRRFGNGWWLPAGPMRERAGRLKSVDAVIVNGGVPRSGEIPMHLLPGQAVNL
                     RTGTRCDVAQLEHVVAMAGIGHPPRFFATLKMCGVQPEKCVPLADHQSLNHADVSALV
                     SAGQTLVMTEKDAVKCRAFAEENWWYLPVDAQLSGDEPAKLLTQLTSLASGN"
     gene            complement(12491..14239)
                     /gene="msbA"
                     /locus_tag="JN125_002286"
     CDS             complement(12491..14239)
                     /gene="msbA"
                     /locus_tag="JN125_002286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A ABC transporter ATP-binding
                     protein/permease MsbA"
                     /protein_id="HAY8872054.1"
                     /translation="MHNDKDLSTWQTFRRLWPTIAPFKAGLIVAGVALILNAASDTFM
                     LSLLKPLLDDGFGKTDRSVLVWMPLVVIGLMILRGITSYVSSYCISWVSGKVVMTMRR
                     RLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMM
                     FYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVL
                     IFGGQEVETKRFDKVSNRMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVM
                     DSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTILDSEQEKDEGKRV
                     IERATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF
                     YDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQI
                     EEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT
                     SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLL
                     EHRGVYAQLHKMQFGQ"
     gene            complement(14276..>15309)
                     /locus_tag="JN125_002287"
     CDS             complement(14276..>15309)
                     /locus_tag="JN125_002287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309023.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HAY8872055.1"
                     /translation="VHLSGPLILEQGLWFLADRSLALLFWGLKSLPEGWINIAERWQW
                     LSFSPWFLLVVWRLNVWRTLPAMCVAVGLLMCWPLWQKPRPDEWQVYMLDVGQGLAMV
                     IARNGKAILYDTGLAWPEGDSGQQLIIPWLHWHNLEPEGVILSHEHLDHRGGLDSILH
                     TWPMLWIRSPLNWEHHQPCVRGEAWQWQGLRFSVHWPLQASNDKGNNHSCVVKVYDGT
                     NSILLTGDIEVPAEQKMLSRYWQQVQTTLLQVPHHGSNTSSSLPLIQRVNGKVALASA
                     SRYNAWRLPSNKVKHRYQQQGYQWLDTPHQGQVTVNFSAQGWRISSLREQILPRWYHQ
                     WFGVPVDNG"
BASE COUNT         3616 a         4314 c         3765 g         3614 t
ORIGIN      
        1 ttatgtgcca tttttttagt gcagaaacgg agttttcgga aaaagaaaag gcggcattgc
       61 tgccgcctta attttaactc gcctgagaag gcgcttcgtc agttcctgga agcgtttcag
      121 ggagttgcgg cgcaaatcct cgcaggccga cgacatgaac atgttcggta ttctggaaga
      181 ctttacgcac cagtttatag gtggtgcctt tctccgggct gatattttcc ggcgctgcga
      241 tgatgagctg catttgtaaa cgctcacaca attcaaacag cgtggcgata gaacgagcat
      301 ccagtcgcgc tgcttcatcg aggaacagca gacggcaagg agagatatct ttaccgcgca
      361 ggcggcgaga ttcatcttcc cagctttgta ccaccatcac cagaatcgac ataccggtac
      421 caatcgcctc accggtcgac aatgcaccag actctgcgcg caaccaacca tcggaaccac
      481 ggttaacctc aacttccatt tccagatagt tgcggtaatc cagcagttct tcgccaatgg
      541 tctgcggcgt gcgctgcccc atatcaatct gcggattaag acgctgatac aatttcgcca
      601 acgcttccga gaaggtcaga cggttgctgt taaacagatc ctgatgctgc tcgtgctgtt
      661 cagagagcac atccagcagc atggcgtgcg tttcacgcac gttcacgttg aggcgcacgc
      721 tgttcacctg accaaacgat acgttctgca acccctggtt gagcatacgg atacggttct
      781 gctcgcgctg aatggttttg cgaatgatgt tcgccacgct gcgggaactg atcaccagtt
      841 tctgttcacg ggaggttaat tcttcggtca gacggctaag ttcgatctcc atctgttcga
      901 tagcttccac cggatcatcg gtacgaataa tatcctgacg aatacgttca cgcagatgct
      961 gataagccgc cacgaagaac tgaattttac gctccggacg tttcggatct tccgacatgc
     1021 gcagcacgtc gcgcagatgt tcgttatccg ccaccgccag acgcagcgca cccaatgcct
     1081 tatccgacat agagcgcaaa tcatcagcgg agagataagc cagctcacga cggtgtaagc
     1141 ggcgctcaac gccgttatct ttcaccatgc gcatcaccgc acaccagccc gctttggcgg
     1201 tcactacctg ctcgcgcatc tcaaagtaat cccgctccag cttgcgcagt ttgcgggtca
     1261 ggttgtccat ctccgcttcg cagaaggtaa gcgctttttc cagttgattg cggcgtgaac
     1321 ggttattgct cagttgcgca tgcagctcgt cacggcgaat acgcgcccgc tcttctgccc
     1381 cgctatcagc acgcacgccg atatcctgca attcacgttg cagatcgttg agtagatctt
     1441 ttttggtgtc gtaagaactt ttcagcgaag ccagcacctg gttgtactga ctcaactgcg
     1501 ctgcgtgacc gcgcaacgct tcgcgagcgc gggtacgctc cgcttccgcc tgttccagac
     1561 gttcacgcag tttttcgttg agatcgctgt taccgctaag catttctgcc gagtcagagt
     1621 agctaaagtg cgcacgacgc tgcaccactt ccgtcagggc aaacgcctgc tgacgggcat
     1681 cgcgctgcat ctgttgagag tacgcgtaat cttcttttaa ctgttcgaac tgttccgggt
     1741 cgctctgcaa taccgaaacg atcggttcca gtttcgccag ttgattgcca aactgctgaa
     1801 caaaacgcgc ggcttcctgg gcttcatcca gacgttcgcg gatttcatcg acgcgatccg
     1861 ccaggctatc atcagccaac aggttgagac gcggcagaat gcggttcagc gccgtaacgc
     1921 cctctttcgc ctgctcaaac tgaatacgct gctgctggtt atcattttca tgattactta
     1981 acgcccgctc cagttcgacg cgacggctgt tcagttgacg gatttctgct tccgggtcag
     2041 actcaaacac aaccgccaga tgactgccga taaagcggct gaacgcctga tgcagacgct
     2101 gagttttctg tacatcaaag gagagcgtgg cgaagcgttc ggaaagcact tcacgctcgg
     2161 catggaggct ttcaatacgg ctttcacgcg cagcacgacc aaacagcggc acttccggga
     2221 aacgtgaata acgccactga cgatcggcga ttttcaccac taccgctttt tccagctcat
     2281 caacgctgaa cacgctgtca tcgaatgact gcggatctcc ttcgatcaga tagagatctt
     2341 ccgggcaatc ggtcaagcca tccaggtgtt cagttacctg tgacagatct ggcaccacga
     2401 tggcgtggcg tgacgggcca tacagcgctg agaagtacgg cgcatcttcc aggctaacgt
     2461 cgtcataaat ttctgacagc agcacaccac caaaacgctc cgccagcgcg ttcagacgct
     2521 gatcttcaga gccgccaggc tggcttaaac gttcgatctc ttcatcgacg gcgtttttgc
     2581 gcgcgcccac ttcatcgcgt tcaacaatcg cctctcgctc acgctccagc aactgttgca
     2641 gatattcggt gacgtcctgg ctggaggtaa actcttcgcc gcactgttcg ctcaactggt
     2701 tgagactgtt ttgcgctgcc agccaaaccg gcgcacgctg catcaaactc tgaatgcgag
     2761 actgcagctg ttcctgctcc tggcgcagtg ccatgcgctc ttcacgggcg ttagacacgc
     2821 tatcggaaag agaggcaatg cgtgcttcca gttcctgatg cagggcttcc agttcgtcga
     2881 tatcaaaatt cttgccctga cgtttgcaga aatctgccag cagacgctca gcttcttgct
     2941 gctcgcgtag acgctgttcc agttcgctta atcgcatccg cagcggctga acctgctctg
     3001 ccaggtgacg ctgatcgacc ccttcgcgca atagttcgcg agcgacatcc cacgcctcgt
     3061 tacgcgccag tgggccgttg attgccacca ccagctgata agcctgctca aactggctgt
     3121 gcgcggtttg cgccatgctc attttctgct caagagagag cattttttca gtcgcttcca
     3181 gctctttcgc ctggaaggtt tccagccatt cggcggcgct gtcggcggtt aagtccggca
     3241 gatggcacag ttctttggca cgattaagcg cagcaatcgc ctggttatac tggatcgcgc
     3301 gcgtttgctg gacgtccagc gcctgctggt agtcagcaag ctggcttttc agctcgtcca
     3361 cttccagttc ggcagcttcc gcgcgagcct cgttctcttc ctggcgttcg atggcttctg
     3421 ccaccacttc gttttgctct tccagacgga tctgcagctc atcgagatcc gcttcgtagc
     3481 gttcgatctt ctcctgctga cgcagtgcgg tttgcaccaa gttcaggtga tcgctggccg
     3541 cctgataatc cgcttccaga tcgccttcgg caccgttgtg ctctgccagc tcacgcgcca
     3601 tatcgacgtg tttgtactgc tcagccgcca gttgctgacg cgaagtatgt aactcgcgac
     3661 gaaactccag ggctttgtcg agatggacac ggcgctcgtt ggcgtgacgc atgtagtccg
     3721 ccgccacgta gttggtagct tcgctgatca gatgcttaaa caggtcacgg tccgactggg
     3781 tgacacgaat cgcttccagc gtcatgcggt tttcacgcag cgccgcttcc atgtcctgga
     3841 acgctttacg cacgccgctg ttttccggca acaggtagtc gcgcagagaa cgggtaatgg
     3901 cactggagat cccgccatac agcgaagctt cgatcagacg atagaatttg ctacggtcag
     3961 atgcggagcg cagacgacgc gcgatgatgc ccagatcgaa catcagcgag tggtaatcgg
     4021 taatggagtt gaactgttta aactgcacgc cttccatcgc ctcgagcttg tctttcagct
     4081 cgttaagcgg cagcacgcgc gcctggcgtt cgttcagggt ttcggtcacc agctgtgtcg
     4141 gctgcaccga catcggcagt ccctgaatgg caaatggttt gatatccact ttacgatcgc
     4201 gtccggcaac ctgttgcaga cgcacaccga ccaccacgcg ctggtggcgc gagttaatgg
     4261 tgtcgagcat cgaataacag acacccgctt tcagcttacc gtgcagacct ttatcgcgcg
     4321 aaccgctggt ggccccggct tccgtagtgt tacggaaatg cagcagggtc aggtcgggga
     4381 tcagcgccgt aacgaacgcc gccatggtgg tggatttacc cgccccgtta ccgccagaaa
     4441 gcgtcgtgac cagctcgtca aggtcaaaag ttcgggcaaa aaagccgttc cagttaatca
     4501 gcgtcagtga gcgaaattta ccgcgttcaa tcattattct tcctctccgc tatctggctg
     4561 attctcttcg gtttcatcgt tgagttgcag atgattttca atcggcattg cttcgccatc
     4621 acgaatcagg cgacgctgtg cttcacgggg atcgtcgcca gcacgcacat cggctccgaa
     4681 gcggaacacc gattcggtaa tgcgaaactt gctgctgtcg tggcccataa accacaccat
     4741 gcctaaacga cgcagacggt tgagcgaaga acgtactttc tcctgcaact tctgacggtc
     4801 aacgtctgaa ccggttgaac ggttgttcac cagtttcagc agttttgctt catcggccag
     4861 ggtgagcagt tcgtcgtaca gttcctgctg ggtgaaaatc ccctcattcg ccagccgttc
     4921 cgggctgaga tagagataac agaggatttt cccgaccatc atatccagtt ccgacaagac
     4981 ggaacgcggg ataagagtgg tggaacgtgg gcgtaaatag aagaaccctt ccggtgcgcg
     5041 aataagctca acgttataac gcgcgtaaaa ctcttccaga tattcctgaa aatccatcag
     5101 gaatgcatga ttatccagtt cgtcgaggcc aatatggcgg cctgaacgta aggcgctgtc
     5161 cagcgccgga aataacggat tcgccagcgc ctgcgccagc ttaaccggca tcacttgttc
     5221 aatatttgtc gatgacatgc gcctgtacct tggctccgta atcattaatc ggctgccatt
     5281 tcgctggcag tccggtgaaa tctgcttgcg ctacgccaag acgtaccgcc tgatcaataa
     5341 caatacgcgc aacgtcaaag tgacgtgcac gcggatactg tgacagatat tcgcgtacca
     5401 ccagaccaag atccagcggc acttgtctgg ttttgtacac ggcaagttgt tcttcgatga
     5461 tcgccgccag ctgttcgcgg atctcgttaa actcttcgta ttccagatcc tcaggaagtt
     5521 ccccagtcac ttcttcatcg cgcagtgcca tctcttcgtc acgcatatcc agcagacgat
     5581 cggcattggc ataagttagc gcccacggct catcaaaata ggtttgtacc gactgacgta
     5641 accgctgagc aaagacgcgg tttttatcca tatcgatcgc ggtacgaata aatttgtgta
     5701 cgtggcggtc gtagccaatc cacaagtcga tggattgctg gccccaactg ataatacgat
     5761 cgagtttgct ctgcagatcg aacaccagac gatcgacgaa atgcagatcg tcatggggca
     5821 tcgtcgcatc ctgaatgcgc aacagattag cctgcaattt gtcgcctgcc gcttccagcg
     5881 tatcctgcaa ttcacgcagc gttccggaag tttccgaaag caacaattca cagctggaaa
     5941 tcgccgcccg ccagtctttg ttcagcaact gggcgatatc gtccttcacc tgctgctgct
     6001 gttcgtccat cagacgttgc gtcaggtcga tactgtcgaa aatttctgct accgaatatt
     6061 tcagtggcgc atagacatta cggtgccagt gaaattcatc accgccctct tcggcggcat
     6121 ctgctgcgcg tttgagctca cccgccacaa tcgacaactg catagaaaga cgcagcgtag
     6181 aaaactcgcg ctgacggatg tagtagtcag taatgccgat gccgagcggc gtcagacggt
     6241 aaattgcgtt cccttccgcc tgctcgctgg taaagcggtt cagcagacgt tgacgcacca
     6301 tgtcgttgat cgcgttattg gcgcgcacgc cgatggtttc gctggtttgc tcaaacgcat
     6361 cactcacatg gcggaatgca tccaccagct cgccttcact catctcacca tccagacgct
     6421 cgccgttcag cgtggcaacc gccagcagaa aagagagtcg gtctaccggc agcgagatgg
     6481 agaagtcatt ttttctggcc caggcaacca gttcggggac tgtctgggaa aattcactca
     6541 tactttatcc ttgctctgcg gtttgcgcgc ggtgacatga atataacgcc ccagggtaat
     6601 atacggttcc tgacggcaat aacgcgtttc taattcaagt aatgcttcat agcagtcgcg
     6661 ctgctggtgc ttctcgcgca gataatcatg aaacacgcga acgcctgtct tacccataat
     6721 ttgccaacca gcttcttcca gccacagata aacctgcgcc gggtcgcgtg gataatctgg
     6781 cgaaagcgtc cgttttttct ttttcggcat tcccgcctgc acgtaatcaa aattcccggc
     6841 gaccatgtta tgcatcaaca aaccatgcgc attgtagaac attaacgaca acacgccgcc
     6901 tggacgcaac actgaccaca gggtctgcaa tacactgcgg ggatcggcca cccactcgag
     6961 caccgcatgg aacaatatca gatcaacggg cgtttccaaa tgcgaagcaa catcctgagc
     7021 ggcgcaatgt ataaattgca tgttgtcgct cacacctttt gcttctgccg cctgttttgc
     7081 gcggtcgatc atctgcgcag aaagatcgca taaaatgacc tgatgcccac gctcggccat
     7141 tttgattgcg gtctgccctt ctccaccgcc agcatccagc acacgcagtt tttgcgggcc
     7201 catttccgcc agcacgcgat cgagatcctg ccacagaata gcctgtcgaa gctgcccttt
     7261 ggtggtgccg taaatgttac gggaaaactt ttccgcaata tcatcaaaat tgcgatcctg
     7321 cattgctttc tccaccggtt ggctaagacg ttttctgata aagacgctat tttgtcacag
     7381 ccacggcgag aatgaacccg tctggtgtaa tatcgctggc gatcccttgc tatatggtta
     7441 aaaaaggaac cagaaaggat gctttttaca ctgaaaaaag tgattggcaa tatgttgctg
     7501 ccacttccgc tgatgttgtt aattattggc gctggcctgg cgctgctgtg gtttagccgt
     7561 tttcaaaaaa ccgcgaagat ttttattagc attgggtggc tggcactctt gttattgagt
     7621 ttgcaaccgg tagccgaccg cctgctgcgt cccatcgaaa gcacctatcc gacatggaat
     7681 aattcgcaaa aagtggacta tatcgtggtg ctcggaggtg gttatacctg gaacccgcag
     7741 tgggcaccga gctctaattt aatcaataac agtctgccac gcctgaatga aggtattcgc
     7801 ttatggcgcg aaaatccggg atcaaaactg atcttcacgg gaggcgtagc aaaaaccaat
     7861 acggtgagta cagcggaagt aggtgccaga gttgcgcaat cgctgggcgt gccgcgcgag
     7921 caaattatca ccctggattt gccaaaagat accgaagaag aagctgcggc agtgaaacag
     7981 gcgattggtg acgccccttt cctgctggtg acctccgcat cacatctgcc gcgggcgatg
     8041 atcttttttc agcaggaagg gttaaatccg ctaccagccc cggcgaatca gttggccatc
     8101 gactcgccgc ttaatccgtg ggaacgggca atcccttctc cggtctggct gatgcatagc
     8161 gatcgtgttg gctatgaaac gcttggccgc atctggcagt ggctgaaagg tccgtcaggc
     8221 gagccacggc aagagtgatt ttgatgccag atcgaagttg cgccgactaa atcgtccggt
     8281 attaaccagt tgcgcaactt catcccataa cacatacaac caacgccgcc agatgaacga
     8341 ctccgccact ggcgcgcgtt gcaggtaact ccagagcaaa tcttccgcca gagaattatc
     8401 cattagtcgg aacagttcgt attctcgcgg tgcccaaagc attagtcccg gcccgaccat
     8461 cgccagtaac tgatcgctgc gcgaatcttt cagcatgctg cgtaaacaga agttaccgtg
     8521 aatcaacaca caattgtcgt taaagccttc aaataatgcc gggagacatt cgcgagtgcg
     8581 aaacaggatc cgcttatcct gcatcgtcag accggtgtta ttgaactgat tgagcgtggt
     8641 ccatagcact tcaacatgtt gccggtacca tgagggccag aaattttcct gagtattgtc
     8701 gaccgcgccg acgcaaccgc gactgtcctg acggtgccag gccagtaagg cttcaacgat
     8761 ttggtctttg agctgttccc agcgttctgg tgttcgggct ggtgcctcca ccgaaacacc
     8821 acgcatccgc tccagtagca ggacatcagg gccggggtgt tcttcatgcg tcatcacacc
     8881 ataaatagtc ggcatacgga cagtcccact tcttgccagc atggtggttt tccatgccag
     8941 ttgtcgggct tttccgggcg tactaaagct tcttgccatt aacggcattg ggtttccctg
     9001 gctgtcatac aaagcccaca acgccgtatc cgctttttca ttgacgcact caatacgact
     9061 gagtttttcg cccagtaaat ggcttaattc ggcacgcagc tgttccattc agattaccct
     9121 cataaaagct actgctttca taatgagcgc caatataaaa gatgtcacct gaatgagatc
     9181 aattgttgaa aagaaaaatt gaggaaaatc gtaacggtac gacactcctc ccaaaattgg
     9241 ctgaagtgtc gtgaagtgaa attagcgcat ttcagcgcga acgcgctcaa gatcttcagg
     9301 ggtatccaca cctgtgccag gaacttcctg agcaacagca acatggattt tttcgccgta
     9361 ccacagaaca cgaagctgct ctaacatttc gatgtgttct aacggacttg cctgccagtt
     9421 gacgtaacga cggataaagc ctgcacggta gccataaatg ccaagatgac gcaggaagtt
     9481 atcgccaacg gtttcaaggc cttctgcaaa acgatcacga tcccaaggaa tggtggcgcg
     9541 tgagaagtac agtgcatacc cttcagcgtc gagaaccact ttcaccgcat tcgggttaaa
     9601 cgcttcttcc gcattgtgga ttggcaccgc cagagtcgcc atacccacct gacgctgagc
     9661 gaggttatca gcaacctgac gaatgattgt cgcagggatc atcggttcat caccctgcac
     9721 attaacgatc accgtgtcgt cgctgaatgc gcatttttcg acaacttccg ccagacgttc
     9781 tgttcctgac tgatgatcgg cgcgcgtcat acatacttca ccgccagcgg cttcaacggc
     9841 gcgggcaaca tcctcatgat cggttgccac gatgatgcgc tcggcacctg attcacgcgc
     9901 gcgttcaaga acatgaacaa tcatgggttt gccgttaata tcaaccaatg gtttaccggg
     9961 cagacgcgtg gacgcgtagc gcgcgggaat aatgaccaca aaactcatga tttactctca
    10021 tcagcagtca gcacgcgggc ttccgtttcc agcaacactg gaatgccatc gcggagcggg
    10081 aaagccaggt tatccagttt gcaaataagc tcttgttttt cctggttata ccaaagtttt
    10141 ccgttgcaaa ccgggcaggc aatgatttca agcaaacgat gatccatagt tcctccagat
    10201 ggatcgggtt atgaatgcat aaatcttatc ataatcattt atgcgacggg gtctatttcc
    10261 cagccagtgc ggcaatcagt aaagagacct tgcgggcagc gtcctaatgt cacccgcgtt
    10321 gcctgctgcc agctcgcgaa atcagtaatc gcctgacgta accctttttg cagcattgtc
    10381 gttggtttaa tgccttcctg taaccacaga gagataactt caaggatgcc tgtctggcga
    10441 tgcattttgg catccattcg cccaactaat tgcccacgat gtaataatgg cagaacaaaa
    10501 tagccatact ggcgtttcgg cgctggggta tagcactcca gccggtagct aaaatcaaaa
    10561 agctgctctg cgcgtttgcg atcccagaca acaggatcaa aaggcgaaag taccgcgctg
    10621 tgcgttgcag tgagctttcc ggccagcgca cgctcgagta gcggcagcaa atcagcatgc
    10681 agccaaagat tgcccaattt ttcaacatgc acagcaatga tttgctgctg ttcagccctc
    10741 gcttcgcgcc acgccgccag tgccggacgt ttcagccgat agtaatctgc cagccactgt
    10801 tcgcggaata ttcccaggct acgcgcactg ttatccagca tgatgatttc tgcttctgtt
    10861 tgcgaaacga gatcgcgctc atcatcccag tcaggcatga cacggtgggt taaatcataa
    10921 acgcgctgga agttgcgccg ttcaatcacc atcacctttc cggcagtaaa taaaccttcc
    10981 agatgccgtt tatgcggctt ccattcccac cagccgcttg cacctttacg aggatgctca
    11041 aaatcggctg aacgtaccgg ccccttatca tgaatatgct gaattaactg tgcaatttcc
    11101 gcctcatgtt cctgcatcca ggcgtctttg tatttccagc ccattttttc aggtgccagc
    11161 atgcggtggc gaataagacg aaagtcgcta cgcggcataa agcaggcttc atgcgcccag
    11221 tattccatta attcgccacg cgccagagac tcatccagcc actgggcagg ataatttccc
    11281 agacgactga aaagcaccag atatggacta cgggcaacaa tattgatggt atcgatttgc
    11341 agcaaggaca tgctggagat cgttgccgga atatcctcca acgacgctcg acggcggggt
    11401 ttgtttaaca ggccttgtgc ggcaaggtga agattacgcg catcagcaag ggagaggtgc
    11461 ggcagcgaca ttcatgactc catcaatcga acgctgccgc ggcgtaacta gttgccagaa
    11521 gccagcgagg ttagttgcgt aagcagtttc gctggttcat cacctgaaag ctgtgcgtct
    11581 acaggcaaat accaccaatt ttcttctgca aaggcccggc atttcaccgc atctttttca
    11641 gtcattacca gcgtttgccc ggcgcttacc aacgcactga catccgcatg gttcaaagac
    11701 tgatgatcgg ccagcggtac acatttttcc ggttgtacgc cacacatctt cagcgtggca
    11761 aaaaagcgcg gcggatgccc aatccccgcc atcgccacta catgttcaag ctgagcaacg
    11821 tcacaacgcg taccggtacg taaattcacc gcctgacccg gcagcagatg catggggatt
    11881 tcaccgctgc gagggacacc gccgttgacg attaccgcat caaccgactt taagcgcccc
    11941 gctcgctcac gcattggccc cgccggcaac caccagccat tgccaaagcg acgcacacca
    12001 tcaataacga caatttccac atcacgcgcc agacggtaat gctgtaaacc gtcgtcggtt
    12061 acgatgatct gcacatcagg gtgttgcgcc agaatggctt ttaccgcatc agaacgaacg
    12121 ggagaaaccg caacaggcgc atcagtgcgt tgataaatca acacaggttc atcacccgcc
    12181 tgtgctgttg tggtatctgc cgacaataac agcggataag attcagcctt actaccatat
    12241 ccccgcgata cgacccccac gcgaataccg cgctgttgca actgttccac cagccagaca
    12301 acgaccgggg tttttccgtt gccgcctgcg gtgagattac caaccacgac aaccggtacg
    12361 ggggcacgcc aggcgcgctt cagttttagt ttatagcaaa gacggatcgc gccactcacc
    12421 aggccataca accaggagag tggcagcaat agccgccaca aaggggattc accagaccag
    12481 attttttcga tcattggcca aactgcattt tgtgaagttg cgcgtaaacg ccgcggtgct
    12541 caagcaaatc gttatgcgta ccgcgttcca caatgacgcc atcctcgacg accacgattt
    12601 cgtctgcctt ttcaatggta gacaagcggt gggcaatcac cagagaggta cggtttttct
    12661 gcaactcatc cagtgccgcc tgaatcgcac gttcggattc ggtatccaga gccgaggtag
    12721 cttcatccag aatcagaatc gggctatcac gcagcaaggc tcgagcgata gcaatacgct
    12781 gacgctgacc gccagagagc agcacgccgt tttcaccaat cactgtatcg agaccgttat
    12841 ccatcttatt gatgaagtcc atggcgtagg ccatacgcgc cgcttcttca atttgctcac
    12901 ggctgtactg ttcagtccgt gcgtaagcaa tgttgttagc aaccgtatcg ttaaacagat
    12961 ggacattctg cgacaccaga gcaacctggt tacgtaacga cgccagggta tactcgcgca
    13021 gatcgtgacc atccatcagg atttcgcctt catcaatatc gtaaaaacga gtgatcaggc
    13081 tggcgatggt tgatttacct gaaccagagc gtccaaccag agcaaccgtc ttccctgccg
    13141 gaattttcag gttgatgtta cgcaatgcag gtacgtcacg tcccggataa gtaaaggtga
    13201 cattgcggaa ttccacgtcg ccagtcgcac gctcgatcac gcgcttacct tcgtctttct
    13261 cctgctcact gtccagaatg gtaaacagcg tctgacaagc cgccataccg cgctggaact
    13321 gggcgttaac gttggtcagt gatttcagcg gacgcatcag tgcaatcatt gaagagaaaa
    13381 caacggtaat cgtaccggca gtcaggctat ccatgacact tgggaagctc gccgcataca
    13441 gaacaaacgc cagcgccaaa gaggcgatca gctgaatgat cggatcagag atggaagagg
    13501 ctgaaaccat tttcatcccc tgaagacgca ttcggttgct gactttatca aagcgtttcg
    13561 tttccacttc ctgaccaccg aaaatcaata cttctttgtg gcccttcagc atttgttcgg
    13621 cgctggtggt cacctgcccc atggtgttct gcatgttttt actgatgttg cgaaaacgct
    13681 tcgatactac gcgaatcgca atcgaaacaa tcggtgccag cacaatcaaa atgatcgaca
    13741 gttgccaact gtaatagaac atcatgatga acaggccgat gattgacgca ccttcacgca
    13801 caaccgttat cagtgcgccg gaagaagaag aagcaacctg ttcggaatcg taggtgatac
    13861 gtgacaacag cgtccccgtt gactgtttgt caaaaaatga aaccggcatt cccatcatgt
    13921 gaccaaacag gcggcgacgc atggtcatta ccacctttcc tgatacccag gagatacagt
    13981 agctggagac atagctggtg ataccacgta aaatcatcag cccgatcacc accagcggca
    14041 tccacaccag cacggagcga tctgttttac caaagccatc atcaagaagt ggcttaagga
    14101 gcgataacat gaaggtatcg ctggctgcgt tgaggattaa cgctacgccc gccacgatca
    14161 gacccgcttt aaaaggcgca atggttggcc acagtcggcg gaacgtctgc cacgtagaga
    14221 gatctttgtc gttatgcatt caaaaaacca gcatttgttg aaatagccgc atattctacc
    14281 cgttatccac tggcacgcca aaccactgat gataccaacg aggtaaaatt tgctctctga
    14341 ggctgctaat ccgccagcct tgcgctgaaa aattgaccgt cacttgaccc tgatgtggag
    14401 tatcaagcca ttgatatcct tgctgttgat agcgatgctt aactttatta gagggcaatc
    14461 gccatgcgtt atagcgcgat gccgatgcga gtgccacttt tccattcact cgctgaatta
    14521 atggcaacga tgatgaggta ttactgccat ggtgaggtac ctgaagcaat gttgtctgca
    14581 cttgctgcca gtaacggctt agcatctttt gttcagcggg gacttcaata tcaccggtta
    14641 gaagaatgct attcgtcccg tcataaacct taaccacaca ggaatggtta tttcctttat
    14701 cgttgctagc ttgtaaaggc cagtgcacgc tgaaacgcaa tccttgccat tgccacgctt
    14761 cgccacgcac acagggctga tgatgttccc agtttaacgg acttctgatc cataacatcg
    14821 gccatgtgtg caatattgag tccagccctc cccggtgatc cagatgttca tgactcagaa
    14881 taacgccttc cggttcaaga ttatgccagt ggagccaggg gataatcagt tgttgcccac
    14941 tatccccttc gggccaggcc agtcctgtgt catagagaat cgctttgccg tttctggcta
    15001 tcaccattgc cagcccttgc ccgacatcaa gcatgtacac ctgccactcg tcaggtcgag
    15061 gtttttgcca cagcggccag cacatcagca agcctacagc cacacacatt gctggcaacg
    15121 ttcgccagac gtttaatcgc cataccacca gtaagaacca tggggaaaat gatagccatt
    15181 gccaacgttc agcaatgttg atccaccctt ctggcaaact ctttaacccc cagaaaagta
    15241 aagccaaaga ccggtcggca agaaaccata acccttgctc caggattaac ggcccgctta
    15301 aatgcacaa
//
LOCUS       DADMHM010000084        15233 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.085, whole genome shotgun sequence.
ACCESSION   DADMHM010000084 DADMHM010000000
VERSION     DADMHM010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15233)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15233)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15233
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.085"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(128..553)
                     /gene="arsC"
                     /locus_tag="JN125_002288"
     CDS             complement(128..553)
                     /gene="arsC"
                     /locus_tag="JN125_002288"
                     /EC_number="1.20.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin-dependent arsenate reductase"
                     /protein_id="HAY8872056.1"
                     /translation="MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDEL
                     VKLIADMGISVRALLRKNVEPYEELGLAEDKFTDDRLIDFMLQHPILINRPIVVTPLG
                     TRLCRPSEVVLEILPDAQKGAFSKEDGEKVVDEAGKRLK"
     gene            complement(566..1855)
                     /gene="arsB"
                     /locus_tag="JN125_002289"
     CDS             complement(566..1855)
                     /gene="arsB"
                     /locus_tag="JN125_002289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenite/antimonite:H(+) antiporter ArsB"
                     /protein_id="HAY8872057.1"
                     /translation="MLLAGAIFVLTIVLVIWQPKGLGIGWSATLGAVLALVTGVVHPG
                     DIPVVWNIVWNATAAFIAVIIISLLLDESGFFEWAALHVSRWGNGRGRLLFTWIVLLG
                     AAVAALFANDGAALILTPIVIAMLLALGFSKGTTLAFVMAAGFIADTASLPLIVSNLV
                     NIVSADFFGLGFREYASVMVPVDIAAIVATLVMLHLYFRKDIPQNYDMALLKSPAEAI
                     KDPATFKTGWVVLLLLLVGFFVLEPLGIPVSAIAAVGALILFVVAKRGHAINTGKVLR
                     GAPWQIVIFSLGMYLVVYGLRNAGLTEYLSGVLNVLADNGLWAAMLGTGFLTAFLSSI
                     MNNMPTVLVGALSIDGSTASGVIKEAMVYANVIGCDLGPKITPIGSLATLLWLHVLSQ
                     KNMTISWGYYFRTGIIMTLPVLFVTLAALALRLSFTL"
     gene            complement(1910..2263)
                     /gene="arsR"
                     /locus_tag="JN125_002290"
     CDS             complement(1910..2263)
                     /gene="arsR"
                     /locus_tag="JN125_002290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="As(III)-sensing metalloregulatory
                     transcriptional repressor ArsR"
                     /protein_id="HAY8872058.1"
                     /translation="MSFLLPIQLFKILADETRLGIVLLLSELGELCVCDLCTALDQSQ
                     PKISRHLALLRESGLLLDRKQGKWVHYRLSPHIPAWAAKIIDEAWRCEQEKIQAIVRN
                     LARQNCSADSKNIYS"
     gene            3003..3086
                     /locus_tag="JN125_002291"
     CDS             3003..3086
                     /locus_tag="JN125_002291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165328.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Damage inducible protein"
                     /protein_id="HAY8872059.1"
                     /translation="MIDKAIIVLGALIALLELIRFLLQLLN"
     gene            complement(3140..4492)
                     /gene="gorA"
                     /locus_tag="JN125_002292"
     CDS             complement(3140..4492)
                     /gene="gorA"
                     /locus_tag="JN125_002292"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003861215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HAY8872060.1"
                     /translation="MTKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVN
                     VGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENV
                     LGKNNVDVIKGFARFVDAKMLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGF
                     FALPALPERVAVVGAGYIAVELAGVINGLGAKTHLFVRKHAPLRSFDPMISETLVEVM
                     NAEGPQLHTNAIPKAVVKNADGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAG
                     VKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNKPDEHL
                     DYSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMK
                     LVCVGSEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFVTMR
                     "
     gene            complement(4564..5406)
                     /locus_tag="JN125_002293"
     CDS             complement(4564..5406)
                     /locus_tag="JN125_002293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2030)-N(6))-methyltransferase
                     RlmJ"
                     /protein_id="HAY8872061.1"
                     /translation="MLSYRHSFHAGNHADVLKHTVQSLIIESLKEKDKPFLYLDTHAG
                     AGRYQLGSEHAERTGEYLEGIARIWQQDDLPAELEAYINVVKHFNRSGQLRYYPGSPL
                     IARQLLREQDSLQLTELHPSDYPLLRSEFQKDSRARVEKADGFQQLKAKLPPVSRRGL
                     ILIDPPYEMKTDYQAVVSGIAEGYKRFATGTYALWYPVVLRQQIKRMLHDLEATGIRK
                     ILQIELAVLPDSDRRGMTASGMIVINPPWKLEQQMNNVLPWLHSKLVPAGTGHATVSW
                     IVPE"
     gene            5609..7651
                     /gene="prlC"
                     /locus_tag="JN125_002294"
     CDS             5609..7651
                     /gene="prlC"
                     /locus_tag="JN125_002294"
                     /EC_number="3.4.24.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptidase A"
                     /protein_id="HAY8872062.1"
                     /translation="MTNPLLTPFELPPFSKILPEHVVPAVTQALNDCRENVERVVAQG
                     APYTWENLCQPLAEVDDVLGRIFSPVSHLNSVKNSPELREAYEQTLPLLSEYSTWVGQ
                     HEGLYKAYRDLRDGDHYATLNTAQKKAVDNALRDFELSGIGLPKEKQQRYGEIATRLS
                     ELGNQYSNNVLDATMGWTKLVTDEAELAGMPESALAAAKAQAEAKELEGYLLTLDIPS
                     YLPVMTYCDNQALREEMYRAYSTRASDQGPNAGKWDNSKVMEEILALRHELAQLLGFE
                     NYAFKSLATKMAENPQQVLDFLTDLAKRARPQGEKELAQLRAFAKAEFGVDELQPWDI
                     AYYSEKQKQHLYSISDEQLRPYFPENKAVNGLFEVVKRIYGITAKERKDVDVWHPDVR
                     FFELYDENNELRGSFYLDLYARENKRGGAWMDDCVGQMRKADGSLQKPVAYLTCNFNR
                     PVNGKPALFTHDEVITLFHEFGHGLHHMLTRIETAGVSGISGVPWDAVELPSQFMENW
                     CWEPEALAFISGHYETGEPLPKELLDKMLAAKNYQAALFILRQLEFGLFDFRLHAEFR
                     PDQGAKILETLAEIKKLVAVVPSPSWGRFPHAFSHIFAGGYAAGYYSYLWADVLAADA
                     FSRFEEEGIFNRETGQSFLDNILSRGGSEEPMDLFKRFRGREPQLDAMLEHYGIKG"
     gene            7659..8411
                     /gene="rsmJ"
                     /locus_tag="JN125_002295"
     CDS             7659..8411
                     /gene="rsmJ"
                     /locus_tag="JN125_002295"
                     /EC_number="2.1.1.242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709277.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(1516)-N(2))-methyltransferase
                     RsmJ"
                     /protein_id="HAY8872063.1"
                     /translation="MKICLIDETGAGDGALSVLAARWGLEHDEDNLMALVLTPEHLEL
                     RKRDEPKLGGIFVDFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRD
                     AFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD
                     ITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLATKRVVVK
                     RPDYAPPLANVTTPNAVVTKGHRFDIYAGTPV"
     gene            complement(8460..9929)
                     /gene="dtpB"
                     /locus_tag="JN125_002296"
     CDS             complement(8460..9929)
                     /gene="dtpB"
                     /locus_tag="JN125_002296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide/tripeptide permease DtpB"
                     /protein_id="HAY8872064.1"
                     /translation="MNTTTPMGMLQQPRPFFMIFFVELWERFGYYGVQGVLAVFFVKQ
                     LGFSQEQAFVTFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGALVLAIGYFMTGMSL
                     LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLIAL
                     SLAPVIADRFGYSVTYNLCGAGLIIALLVYIACRGMVKDIGSEPDFKPMSFSKLLYVL
                     LGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFRQAFKLDKTGRNKMFVAFVLML
                     EAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVLASPILADIYT
                     HLGNKGKDLSMPMKFTLGMFMCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLG
                     ELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLET
                     LPVYTNVFGKIGLVTLGVAVVMLLMVPWLKRMIATPESH"
     gene            complement(10247..10681)
                     /gene="uspA"
                     /locus_tag="JN125_002297"
     CDS             complement(10247..10681)
                     /gene="uspA"
                     /locus_tag="JN125_002297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspA"
                     /protein_id="HAY8872065.1"
                     /translation="MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYS
                     DLYTGLIDVNLGDMQKRISEETHHALTELSTNAGYPITETLSGSGDLGQVLVDAIKKY
                     DMDLVVCGHHQDFWSKLMSSARQLINTVHVDMLIVPLRDEEE"
     gene            11071..11406
                     /gene="uspB"
                     /locus_tag="JN125_002298"
     CDS             11071..11406
                     /gene="uspB"
                     /locus_tag="JN125_002298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspB"
                     /protein_id="HAY8872066.1"
                     /translation="MISTVALFWALCVVCIVNMARYFSSLRALLVVLRNCDPLLYQYV
                     DGGGFFTSHGQPNKQVRLVWYIYAQRYRDHHDDEFIRRCERVRRQFILTSALCGLVVV
                     SLIALMIWH"
     gene            complement(11650..13149)
                     /gene="pitA"
                     /locus_tag="JN125_002299"
     CDS             complement(11650..13149)
                     /gene="pitA"
                     /locus_tag="JN125_002299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter PitA"
                     /protein_id="HAY8872067.1"
                     /translation="MLHLFAGLDLHTGLLLLLALAFVLFYEAINGFHDTANAVATVIY
                     TRAMRSQLAVVMAAVFNFLGVLLGGLSVAYAIVHMLPTDLLLNMGSSHGLAMVFSMLL
                     AAIIWNLGTWYFGLPASSSHTLIGAIIGIGLTNALMTGTSVVDALNIPKVLSIFGSLI
                     VSPIVGLVFAGGLIFLLRRYWSGTKKRARIHLTPAEREKKDGKKKPPFWTRIALILSA
                     IGVAFSHGANDGQKGIGLVMLVLIGVAPAGFVVNMNATGYEITRTRDAINNVEAYFEQ
                     HPALLKQATGADQLVPAPEAGATQPAEFHCHPSNTINALNRLKGMLTTDVESYDKLSL
                     DQRSQMRRIMLCVSDTIDKVVKIPGVSADDQRLLKKLKSDMLSTIEYAPVWIIMAVAL
                     ALGIGTMIGWRRVATTIGEKIGKKGMTYAQGMSAQMTAAVSIGLASYTGMPVSTTHVL
                     SSSVAGTMVVDGGGLQRKTVTSILMAWVFTLPAAVLLSGGLYWLSLQFL"
     gene            13381..14583
                     /locus_tag="JN125_002300"
     CDS             13381..14583
                     /locus_tag="JN125_002300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HAY8872068.1"
                     /translation="MERFDAIIIGAGAAGMFCSALAGQAGRRVLLIDNGKKPGRKILM
                     SGGGRCNFTNLYVEPGAYLSQNPHFCKSALARFTQWDFIDLVNKHGIAWHEKTLGQLF
                     CDDSAQQIVDMLVDECEKGNVTFRLRSEVLSVAKDETGFTLELNGMTVGCEKLVIATG
                     GLSMPGLGASPFGYKIAEQFGLNVLPTRAGLVPFTLHKPLLEELQVLAGVAVPSVITA
                     ENGTVFRENLLFTHRGLSGPAVLQISSYWQPGEFVSINLLPDVDLETFLNEQRNAHPN
                     QSLKNTLAVHLPKRLVERLQQLGQIPDVSLKQLNVRDQQALISTLTDWRVQPNGTEGY
                     RTAEVTLGGVDTNELSSRTMEARKVPGLYFIGEVMDVTGWLGGYNFQWAWSSAWACAQ
                     DLIAAKSS"
     gene            complement(14899..>15233)
                     /locus_tag="JN125_002301"
     CDS             complement(14899..>15233)
                     /locus_tag="JN125_002301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417948.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2776 domain-containing protein"
                     /protein_id="HAY8872069.1"
                     /translation="GIYVLVSSDASARLAPGIILICLGMICYSIFSKVWLLALVWRRT
                     CSLANRIPMIPVFTCLFCLFLASFLAEMAQTDMGYFIPSRVLVGLGAVCFTLFSIVSI
                     LEAGSAKK"
BASE COUNT         3844 a         3902 c         3998 g         3489 t
ORIGIN      
        1 acgctctaca tatttcatgc catatattga atttgcacgg ttttgtaggt cggataagac
       61 gcgttagcgt cgcatccgac ataaacaaag cgcactttac caactatcgg cagtggatat
      121 cgccgcttta tttcaggcgc ttacccgctt catcaaccac tttctcgcca tcttccttgg
      181 agaatgcgcc tttttgcgca tctggcagaa tttccagcac cacttctgaa gggcggcaca
      241 ggcgagttcc cagcggcgtc accacaatcg ggcgattaat cagaatcggg tgctgaagca
      301 taaagtcgat taaccgatcg tcagtaaatt tatcttccgc aaggcccagc tcctcatacg
      361 gttcgacgtt tttacgcagc agcgcgcgta cggaaatccc catatcggca atgagtttga
      421 ccagttcatc gcgcgttggc ggagtttcca gataatggat aatggtcggt tctgtgccgc
      481 tgttgcggat catctccagc gtattacgcg acgtgccgca ggccgggttg tgataaatgg
      541 taatgttgct catatcagta tctcattaca aagtgaaaga gagacgtagc gccagcgcag
      601 ccagcgtcac aaacagcaca ggcagggtca tgataatccc tgtacggaag taatatcccc
      661 agctgatagt catattcttc tgtgaaagta cgtgcagcca gagtagtgta gccaggctac
      721 caattggggt aattttcggt cccaaatcgc agccaatcac attggcataa accatcgctt
      781 ctttgataac gccagatgcc gtgctgccat caatggacaa cgcgccaacc agtaccgtcg
      841 gcatattgtt cataatagaa gagaggaagg ctgtgaggaa tccggtgccg agcatcgcgg
      901 cccacaggcc gttatccgcc agcacgttga gtacgccaga aagatattcc gttaatccgg
      961 cattgcgcag gccataaacc accagataca tgccgagcga gaagatgaca atttgccagg
     1021 gggcaccgcg caggacttta cccgtattaa tcgcatgacc gcgtttagcg acgacaaata
     1081 atatcagcgc gcccacagct gcaatggcgc tcaccggaat gccgagcggt tccaggacga
     1141 aaaatcccac cagcagaagc agtaaaacaa cccagccagt tttgaacgta gcaggatctt
     1201 tgatcgcttc tgcgggagat ttcagcagcg ccatatcgta gttctgcgga atatctttgc
     1261 gaaaatagag atgtagcatc accagcgtgg caacaatcgc ggcgatatcc accggcacca
     1321 tcaccgaggc gtattcgcga aagccgaggc caaagaaatc agcggaaacg atattcacca
     1381 agttggagac aataagcggg aggctggcgg tatcggcaat gaatccggcc gccatcacga
     1441 acgccagcgt cgtgccttta ctgaatccta aagccagcag catggcgatg acaatcggcg
     1501 tcaaaataag cgctgcgcca tcattggcaa acagggcggc aacggcagca ccgagcagga
     1561 caatccaggt aaacagcaag cgaccacgac cattacccca gcgtgagacg tgcagcgccg
     1621 cccattcaaa aaagccggac tcatccagca gcaggctgat gataatgacg gcaataaacg
     1681 cagccgtcgc gttccagacg atattccaca ccaccggaat atcacccgga tggaccacgc
     1741 ccgtaactaa cgccagtact gcgccgagcg ttgcactcca gccgatgcct aaacctttcg
     1801 gctgccagat aaccaataca atggtcagga caaagatagc gcctgccagt aacataatgc
     1861 ctcctggata aaacacatgc gaaaatacat atgtgtttag ctaaattttt taactgtaaa
     1921 tgttcttact gtctgcggaa cagttttgtc gagccaggtt gcggacaatt gcctgaatct
     1981 tttcctgttc acatcgccag gcttcatcaa ttattttcgc cgcccatgct ggaatatgcg
     2041 gcgataagcg gtaatgaacc catttacctt gcttgcggtc cagcaatagc ccgctttcac
     2101 gcagcaatgc caggtggcgg gagatcttgg gctgcgactg gtcgagagca gtgcagagat
     2161 cgcagacgca taactctccc agttcgctga gcagtaaaac gatgcccaga cgggtttcat
     2221 cagcaagaat tttgaacaat tggatgggta acagaaatga catattgcgc tcctgattgt
     2281 tgcaggtagt gtctctcttc gaagcggata agtcaaaaac atatatgatt taacgaatgt
     2341 gtaagtgcag aggaaggtaa taggtgtgaa ttttgagttg gctattcatt tgaaaggagg
     2401 tctgaatcag gacgtaaaaa aaccgacttt gcgtcggttt tttactttcc agccctgagt
     2461 tggtggctct ggctggagtg agagagttct tatctaacag ctcaatacta ttagccagtg
     2521 gctaacattg caagaattag cgatttcttc agctggcgga gggagcactt cggtatatat
     2581 cgcagtgacg atttatatac tttcactggg tcatcgtcat attaagcctt gtccgaatcc
     2641 ggatgtaaaa aaaccgactt tgcgtcggtt ttttactttc cagccctgag ttggtggctc
     2701 tgactggagt gagatagcca tcatctaacg catcaatgct aataccatac tgaaactatt
     2761 gcaaggacgt gctggtttta taacctgcat gtactgtatg attatccagt tagctctgag
     2821 gcattttcac tctggcaatg cgcataaacg ctttcaaagt cctggtcaga agtacgggtg
     2881 gtgccgttaa ctgatgctct ggccggagtg agagagttct tatctaacaa tgagacatgc
     2941 gccgtgacag gcagtggatg agtaagcgga tgcattctca ctccatcgca tggagaaaac
     3001 gggtgattga taaagcaatc atcgttctag gggcgttaat tgcgctgctg gaactgatcc
     3061 gctttctgct tcagcttctg aactgatagc ggaaacgtaa ttaagggcta agagcacact
     3121 actcttagcc ctttaacatt taacgcattg tcacgaactc ttctgccgcc gttgggtgaa
     3181 tggcgacggt attgtcgaag tcttttttgg ttgcccccat cttcagcgcc accgcgaagc
     3241 cctgcaacat ttcgtccata ccaaagccaa tgccgtgaat accgacaatc ttctcttccg
     3301 atccaacgca caccagcttc atgcggcacg gctggcggtg agtggtgacg gcggtataca
     3361 tcgcggtgaa agaggattta tacactttca cctgatcgtc gccatactgc tcgcgcgcct
     3421 gcggttccgt taaaccaaca gtaccaatcg gcggatggct gaagaccacg gtcggaatgt
     3481 tgctgtaatc cagatgctca tccggcttgt tattaaacag gcgttcagag agacggcgac
     3541 ccgctgcaac tgccaccggt gtcagctcca ctgcacccgt gttatcgccc accgcgtaaa
     3601 taccttcaat gttggtgttt tgatatttat cgacgacgat atagcctttt tcgttggttt
     3661 taacgccagc ggcttcgagg ttgatgttgt cattggcagg ctcgcgacca atcgcccaaa
     3721 tcaggcaatc caccgtttca ctgcgaccat cttccagctc cagcgtcagg ctaccatcgg
     3781 catttttcac taccgctttc gggatggcgt tggtgtgcag ctgcgggcct tcggcgttca
     3841 tcacttcgac cagcgtttcg gaaatcatcg ggtcgaagct gcgcagcggc gcatgtttac
     3901 gcacaaacag atgcgttttc gcgccgaggc cgttaatcac gcccgccagc tcaacggcga
     3961 tgtaacccgc gccaacaacc gccacgcgct ctggcaaagc aggaagggcg aagaagccat
     4021 cagaatcaat accgtattcc acgcccggaa tatccgggtg gctcggacga ccgcctgtgg
     4081 cgatcagaat atgatcggcc gtgatggttt cgccgtttac ctccagcatt ttggcatcaa
     4141 cgaagcgggc aaagcctttg attacatcaa cgttattttt accgagcacg ttttcatagg
     4201 aagtatgaat acggtcgata taggcggtac ggctggcgat caacgtttcc cagttgaact
     4261 tgttgatggt ggtatcgaaa ccataatcag ggccgtacat atggatcgct tcacggattt
     4321 gcgccgcgtg ccacatcact tttttcggca cgcagccgac gttcacgcag gtgccgccca
     4381 gctctttggc ttcaatcagt gcgcatttct ggccgtacat agccgcgcgg ttgatggagg
     4441 ctataccgcc gctgccgccg ccgatggcga tgtaatcata gtgtttagtc atgacagagt
     4501 gtccttatcg ttgattaccg cgattgtagc gcgagacgta ataggtgcca gcaatggctg
     4561 caattactcc ggcacgatcc agcttacggt ggcgtgcccg gtgcctgccg gaaccagttt
     4621 gctgtgcagc cacggcagca cgttattcat ctgctgttcc agtttccacg gcgggttaat
     4681 cacaatcatg ccggaagcgg tcatgccacg gcgatcgctg tctggcagta ccgccagttc
     4741 aatttgcaga attttgcgaa taccggtcgc ttccagatcg tggagcatgc gcttaatttg
     4801 ctgacgcagc accaccggat accacagtgc gtaagtacca gtggcgaaac gtttgtaacc
     4861 ttctgctatc ccgctgacca ccgcctgata gtcggttttc atttcatacg gcgggtcgat
     4921 aaggattaaa ccacggcggg aaaccggcgg cagtttggcc ttaagctgct ggaaaccatc
     4981 ggctttttcg acgcgcgcac ggctgtcttt ctgaaattca gaacgcagca acgggtaatc
     5041 gctcgggtgc agttcggtca gttgcaggct gtcttgttcg cgcagtagct ggcgagcaat
     5101 caatggcgaa ccggggtagt aacgcaactg accgctacgg ttgaagtgtt ttaccacatt
     5161 gatgtacgcc tccagttctg cgggcaaatc gtcctgctgc cagatacggg cgatgccttc
     5221 gagatattcg ccggtacgct cggcatgttc gctgcctaac tgataacgcc cggcccctgc
     5281 gtgggtgtcg agatagagaa acggtttatc tttctctttc agcgactcga tgatcaggct
     5341 ctgaacggta tgtttaagga cgtcggcgtg gttgccagcg tgaaagctgt ggcgataact
     5401 gagcatgggt aaaggtgttc cggtaagtaa aaatcggccc gtattcgggg cgcacaaaag
     5461 cgtatcagga cagtataccg aaaagaggcc gccgccgcga aagcgtaacg tttctcattg
     5521 aaattcacta cacttaaccc catgctacac acattatgta aagcgcctgt tgagcgcttc
     5581 cttaacctct ttaaccagga ctgcgcgaat gacgaatccg ttactgactc cctttgaatt
     5641 gcctccgttt tctaaaattc tcccggaaca tgtcgttcca gccgtgactc aggcgctgaa
     5701 cgattgccgc gaaaatgtgg agcgcgtagt agcgcaaggg gcaccgtaca cctgggaaaa
     5761 tctctgccag ccgttggcgg aagtggacga tgtgttgggg cgtatcttct ccccggtcag
     5821 ccacctgaac tcggtgaaaa atagcccgga actgcgtgaa gcctacgagc aaaccctgcc
     5881 gctgctgtcg gaatacagca cctgggtagg gcaacatgaa gggctgtata aagcgtaccg
     5941 cgacctgcgc gatggcgatc attacgccac gctgaacacg gcgcagaaga aagcggttga
     6001 taacgccctg cgtgattttg aactctctgg cataggtctg ccgaaagaga aacagcagcg
     6061 ttacggcgaa attgcgaccc gtctttctga actgggcaac cagtacagca acaacgtcct
     6121 cgatgcgaca atgggctgga ccaaactcgt taccgacgaa gcggagctgg cggggatgcc
     6181 tgaaagcgcg ctggctgcgg caaaagccca ggccgaagcg aaagagctgg aaggctacct
     6241 gctgacgctg gatatcccaa gctacctgcc ggtaatgacc tactgcgaca accaggcctt
     6301 gcgtgaagag atgtatcgcg cttacagcac ccgcgcctcc gatcaaggcc cgaacgccgg
     6361 taaatgggat aacagcaagg tgatggaaga gatcctcgct ctgcgtcacg aactggcgca
     6421 actgctgggc tttgaaaact acgcctttaa atcccttgcc actaaaatgg cagaaaaccc
     6481 gcagcaggtg ctggatttct taaccgatct ggcaaaacgc gcgcgtccgc aaggcgaaaa
     6541 agagctggca caactgcgcg ccttcgccaa agcggaattt ggcgtcgatg agttgcagcc
     6601 gtgggatatc gcgtactaca gcgaaaaaca aaaacagcac ctctacagca tcagtgacga
     6661 acagctgcgt ccgtacttcc cggaaaacaa agcggttaac ggcctgtttg aagtggtgaa
     6721 acgtatttac ggcatcaccg ctaaagagcg taaagatgtt gatgtctggc atccggatgt
     6781 acgtttcttc gaactgtatg acgagaacaa cgaactgcgc ggcagcttct acctcgatct
     6841 gtatgcccgt gaaaacaagc gcggcggggc gtggatggat gactgcgtag gccagatgcg
     6901 taaagctgac ggttctctgc aaaaaccggt cgcgtatttg acttgtaact tcaaccgccc
     6961 ggtaaatggt aaaccggcgc tgttcactca cgacgaagtg atcaccctgt tccacgagtt
     7021 cggtcacggc ctgcaccata tgctgacccg catcgaaacc gctggtgttt ccggtatcag
     7081 cggtgtgccg tgggatgcgg tcgaactgcc gagtcagttt atggaaaact ggtgctggga
     7141 gccggaggcg ctggcgttta tctctggtca ctatgaaacc ggcgaaccgc tgccgaaaga
     7201 gttgctggat aaaatgctgg cggcgaagaa ctaccaggcg gcgctgttta ttctgcgcca
     7261 gctggagttc ggcctgttcg atttccgcct ccatgccgag ttccgcccgg atcagggtgc
     7321 gaaaatcctc gaaactctgg cagaaatcaa gaaactggtt gccgtagtac cgtctccatc
     7381 ctggggccgt ttcccgcacg ctttcagcca tattttcgcc ggtggttatg ccgcaggtta
     7441 ctacagctac ctgtgggctg acgtactggc ggcagatgcc ttctcgcgct ttgaggaaga
     7501 gggcattttc aaccgtgaaa ccgggcagtc gttcctcgac aacattctga gccgtggcgg
     7561 ttcagaagag ccgatggatc tgttcaaacg cttccgtggt cgtgaaccgc agctggatgc
     7621 gatgctggag cattacggca ttaagggctg atcattcagt gaaaatctgc ttaattgatg
     7681 aaacaggcgc cggagacggc gccttatctg ttctggcggc ccgctggggg ctggagcacg
     7741 atgaagacaa cctgatggcg ctggtgttaa cgccggaaca tctggaattg cgcaagcgtg
     7801 atgagccaaa acttggcggc atctttgttg attttgttgg cggagcgatg gcgcaccgac
     7861 gcaaattcgg cggtggtcgc ggtgaggcgg tggcgaaagc ggtgggcatt aaaggcgatt
     7921 atttgccgga tgtggtggac gccaccgcag ggctggggcg cgatgccttt gtactggctt
     7981 cagtcggctg ccgcgtgcgg atgctggagc gtaatccagt ggttgccgcg ctactcgacg
     8041 acggcctggc gcgtggttat gcggatgcgg aaatcggcgg ctggttgcag gagcggttgc
     8101 agttaattca cgcctccagc ctgacggcgc taaccgatat taccccacgc ccgcaggtgg
     8161 tctatctcga tccgatgttc ccgcataagc agaaaagcgc gctagtgaaa aaagagatgc
     8221 gtgtctttca gtcgctggtg ggaccggatc ttgatgccga tggattactg gagcctgcac
     8281 gcttgctggc gaccaaacgc gtggtggtaa agcgcccgga ctacgcgcca ccgctagcga
     8341 atgtcaccac gccaaacgcg gttgtgacta aagggcatcg ctttgatatc tatgcaggta
     8401 cgcccgtgta aaagtaaagc agggtagcga taacgctacc ctgctttctg caagaataat
     8461 taatggcttt ccggcgtcgc aatcatgcgt ttcagccacg gcaccatcaa cagcatcact
     8521 actgcaacgc ccagcgtgac cagaccaatc ttaccaaaca cgttggtata gacgggcaac
     8581 gtctcaagcg gatcggtaat gttgtccggc accgcggtaa atgttgccac atagccgccc
     8641 agcaagaacg cggcagcctg cgtcaggaac cacatcccga gaataaagcc catcaaatgc
     8701 tgcggcacca gggcagcaat catcgccagg ccaagggcgc taataaacag ttcacctaag
     8761 ctctggaata agtacaccag cacgataaac catggcgatg tcagcccttg tgcatccgca
     8821 aaccacattc ccgcagctgc cgccgtcaaa aagcccagtg agcacataaa catgccgaga
     8881 gtaaatttca tcggcatcga gaggtctttg cctttgttac ccagatgcgt gtaaatgtct
     8941 gccagtattg ggctggcgag taccacccag aacgggttaa gcgcctggaa gctgaccggg
     9001 ttgatggaaa aaccgagaat ttcatgatgc acgttgttga tggcaaagaa gttcagcgat
     9061 gttggcatct gggcgtagag aatgtaaaac accaccgctt cgagcatcag gacaaaggcg
     9121 acaaacattt tattgcgccc ggttttatcc agcttgaatg cctgacgaaa gaagatgatg
     9181 gtgacgacga tggagagaac aatcagcacc agattggcga cttctacgtt gtgcatcagc
     9241 catgcacata cgaagatcat caccacgctg ccaagtaata cgtacaacag tttgctgaag
     9301 ctcatcggct tgaagtcggg ttcagaacca atgtctttca ccattccacg acaggcgatg
     9361 taaaccagta atgcgataat taaccccgcc ccgcacaggt tgtaggtgac tgaataaccg
     9421 aatctatcag cgatcacagg ggccagcgat aacgctatca acgagccgat attgatcgac
     9481 atatagaaca gggtgaatgc gccatcaagc cgcggatctt tcggcggata gcacttcgaa
     9541 agcaagctgg ctgggttagc tttaaacagg ccgttaccga cagcgatagt ccccagggcg
     9601 atgaaaatca ggtcaggctt aagtagcgac atgccggtca tgaagtagcc aatcgccagc
     9661 acaagtgctc cgagaacaat ggtgcgtttg gtccccagca ggtggtcgcc gacatagccg
     9721 ccaatggaaa tgaggccata gaccagcgca gcaaaagcac caaaagtgac aaaagcctgc
     9781 tcttgcgaga atccaagctg tttaacgaag aaaaccgcca gtacgccctg cacgccgtag
     9841 tagccgaatc gctcccataa ctcgacaaaa aagatcatga aaaatgggcg aggttgctgc
     9901 agcatcccca tgggtgttgt tgtattcata tttattaacc ttccaatacc atcctgaaaa
     9961 gtatgaacgc gtaagggata acgcgcgaaa aagtttacat ctgtcagaga ttcttaatat
    10021 tgatgcggtg aatagattaa tacactatta caacagaaaa taaccagcta atcacactaa
    10081 tgatggaaaa tatgatggtg ttaaatgttg tattggcagg agattttgat tgcgtacgca
    10141 gatcgtaggc cagataaggg gtttacgctg catcaggtaa caaggcgcgc caaaaagcaa
    10201 aacgcccgca tatgcgggcg ttcaggaaca cgtcgtggag ggaagattat tcttcttcgt
    10261 cgcgcagcgg aacaatcagc atatcaacgt gaacggtgtt gatcagctga cgtgcggaag
    10321 acatcagttt gctccagaag tcctggtggt gaccacaaac caccagatcc atatcgtatt
    10381 tcttgattgc atcgaccaga acctggccca ggtcgccgct gccgctcagg gtttcagtga
    10441 ttgggtagcc tgcattagtg gaaagctcgg tcagcgcatg atgtgtctct tcagagatgc
    10501 gtttctgcat atcacccaga ttcacatcaa taagcccggt gtataggtca gagtagttta
    10561 catctacgtg gatcagagaa actttcgcat tgtaggggcg agccatagag actgctttct
    10621 ctaccagaac tttgctttcc ggggagagat cgaccgcgat gagaatgtgt ttataagcca
    10681 tagtgttact ccttccataa agttgtcgat gactggccag ctagcgtttc ttgtgccgtt
    10741 acgtcacccg cgtcctgcga actacgtgcg cggggctaac ccagccgtaa agattcagtg
    10801 ttaagaccat ccttacctta tagcgacccg gatgatccgt caatccgcct tgcttacccg
    10861 ttagataaac aaattttcga catgaatata ttgatagtgg ttaaccttct ggaaaaaaaa
    10921 caacctgatc tcctacacta tctatagagc cgctcggatg ttggtcacca caaaagcggt
    10981 ttctccagga cctggtgtta actgattggc agcgtatcgg gagcggtagc cccgggtgga
    11041 actccgcggg caggtcgccg gggaggaggt atgataagca ccgtcgcatt attttgggct
    11101 ttatgtgtcg tttgcattgt taacatggcg cgctatttct catcactacg cgcgttgtta
    11161 gtggtactgc gtaactgcga tccattgctc tatcaatatg ttgatggagg gggctttttt
    11221 acctcacatg gccaaccaaa caaacaggtg cgtctcgttt ggtatatcta tgcccaacgt
    11281 tatcgcgatc atcacgatga tgagtttatt cgccgctgtg agcgggtgcg tcggcagttt
    11341 attctgacta gcgcattgtg tggtctggtg gtggtcagcc tgattgcatt gatgatttgg
    11401 cattaagcac ttcagcaata ataacgcata aaaaaagcgg gccagtaaac tgacccgctc
    11461 gagactgatt acaaacgcaa aattgcctga tgcgctacgc ttatcaggcc tgcataatct
    11521 ctgcaatcta ttgaatttgc atgtttttgt aggccggata aggcgttcac gccgcatccg
    11581 gcatgaacaa agcgcactat gtcacaatct gaagcgggcc agctgacccg ctcgttttgg
    11641 tgcgtacgat tacaggaact gcaaggagag ccagtacagc ccgccggaaa gcagtaccgc
    11701 agccggaagg gtaaacaccc aggccatcag aatgctggtc acggttttac gctgtaagcc
    11761 gccaccatct accaccatcg tccccgcgac agaagaggag agtacgtgag tagtggaaac
    11821 cggcatcccg gtataactcg ccaggccgat agacactgcc gccgtcatct gggcagacat
    11881 cccctgagcg taggtcatgc ctttcttacc gattttctca ccgatagtcg ttgccacacg
    11941 acgccagcca atcatcgtac cgatacctaa cgccagcgcg accgccatga tgatccacac
    12001 cggtgcatac tcgatggtgc taagcatgtc ggacttcagt ttcttcaaca ggcgctgatc
    12061 gtcagcactc acgccaggta tcttcactac tttgtcgata gtgtcagaaa cgcacagcat
    12121 aatgcggcgc atctggctac gttgatcaag cgacagcttg tcgtagcttt ccacatcggt
    12181 agttaacata cctttcaggc ggttgagcgc gttaatggta ttcgacggat ggcaatggaa
    12241 ctccgcgggt tgcgttgcgc cagcttccgg agccggtact aactgatcag caccggtagc
    12301 ctgtttcagc agcgcaggat gctgctcaaa gtaagcttcg acgttgttga tggcatcacg
    12361 ggtacgggtg atttcgtagc cagtggcatt catattcacc acgaagcctg caggtgcgac
    12421 accaatcaat accaacataa ccagaccaat gcctttctga ccatcgttcg cgccgtgcga
    12481 aaacgccacg ccgatagcgg aaaggatcag cgcaatacgc gtccagaacg gcggcttttt
    12541 cttgccgtct ttcttttcac gctccgctgg ggtcaggtgg atacgggcgc gtttcttggt
    12601 gccgctccag tagcgacgca gcaagaaaat cagaccgcca gcaaacacca ggccgacaat
    12661 aggggaaacg atcagagaac cgaaaatact taatactttc gggatattga gtgcatccac
    12721 cactgacgtc ccggtcatca acgcattggt taaaccaatc ccgatgatcg cgccaatcag
    12781 tgtatgagag ctggatgcag gtaaaccaaa gtaccaggta cccaggttcc agataatcgc
    12841 cgccagcaac atagagaaca ccatggcaag gccatgagac gatcccatat taagcagcag
    12901 atccgtcggc agcatatgca caatggcata ggcaacactc agaccaccca gcaaaacacc
    12961 caaaaagttg aacaccgccg ccataaccac ggcgagctga gaacgcatcg cgcgggtata
    13021 gataacggtt gccacggcgt tggctgtgtc atggaaacca ttgatggctt cgtagaacag
    13081 cacaaaagcc agtgcaagca ataataacag cccggtatgc aaatccaggc cagcaaacaa
    13141 atgtagcata ggacgttacg ccattttgag gacatgaacg cggcgcatta tcagtgactt
    13201 tcgcggcgcg ggcaaagtga aatatagact ttttttgatt tgcctcctgt atggatttca
    13261 ctcaaaaaat aattatctta tataattcag gcaaatactt ccttttagta atattgatgc
    13321 tggtgtgacc actgaggaat ctttacaatt cacgcccgtt ttttctaaga ggagcgcaac
    13381 gtggaaaggt ttgatgccat tattataggc gctggtgcgg cgggtatgtt ctgttctgcg
    13441 ctggcaggtc aggcaggacg ccgggttctg ctgatcgata atggtaaaaa accagggcgc
    13501 aaaatcctta tgtctggcgg tgggcgctgc aactttacca acctttatgt cgaaccaggc
    13561 gcttatctga gccagaatcc gcatttttgt aagtctgcac tcgcgcgttt tacccagtgg
    13621 gatttcattg atctggtcaa taaacacggc atcgcctggc acgagaaaac gttaggacaa
    13681 ctcttctgcg atgactccgc gcagcagatt gtcgacatgc tggtggatga gtgcgagaag
    13741 ggcaatgtaa ccttcagatt gcgtagcgaa gtgctgagtg tggcgaagga tgaaacaggc
    13801 ttcacgcttg aactgaacgg catgactgtc ggttgcgaaa agctggtcat cgcgaccggt
    13861 gggctgtcaa tgccggggct gggcgcatcg ccgtttggtt ataagattgc cgaacaattt
    13921 ggcctcaacg tgctgccgac ccgtgcgggt ctggtgccat tcactctgca taaaccgttg
    13981 ctcgaagagt tacaggtgct ggcgggcgtg gcggtgcctt ccgtgattac cgctgaaaac
    14041 ggcaccgttt tccgtgagaa cttactcttc acccaccgcg gcttatctgg accggcggtg
    14101 ttgcagattt ccagctactg gcaaccgggt gaatttgtca gtatcaatct gctaccggat
    14161 gtggacctcg aaaccttcct gaatgagcag cgtaacgcac atccgaatca gagcctgaaa
    14221 aacacactgg cggttcatct accgaagcgg ttggttgaac gcttacagca actcgggcaa
    14281 atcccggatg tttcgctaaa acagctcaac gtgcgtgacc aacaggcact gattagcaca
    14341 ttgaccgact ggcgcgtaca acccaacggc actgaaggct atcgcactgc cgaagtgacg
    14401 ctcggcggcg tggacaccaa cgaactctct tcacgaacga tggaagcgcg caaagtgcct
    14461 gggctgtact tcatcggcga agtgatggac gttaccggct ggctgggggg ctataacttc
    14521 cagtgggcgt ggtcgagtgc gtgggcttgt gcgcaggatt tgattgcagc gaagtcgtcc
    14581 tgacctgtta cctaaagatg aaaattatta gagccgcatt aaaaatgagc taattttgat
    14641 agtggctatc ttgtgattat tttctaatga gcccgtgaac tgaaaccctc caagcttaat
    14701 ataaggtgga aggaaagatg attgaaaact cacccagtgg ccagatcttt ataaaatatg
    14761 aacaggctga aaaagacagt aactttgttg tttttttatc cttaaccact atgcattaat
    14821 gctgcgttat ttcatgatgc ctaagaaaaa ccagcgttac gcaaatggtc aacgctggtt
    14881 ttatccggta cgttgcaatt attttttagc agaacctgct tctaatattg aaacgattga
    14941 gaacaacgta aagcataccg ctcccaaacc gaccaaaacc cgcgaaggaa taaaatatcc
    15001 catgtcggtc tgcgccattt ccgcaagaaa cgatgccagg aaaaggcaaa acaggcaggt
    15061 gaagacggga atcatcggta ttctgttggc taacgaacag gtacgtctcc ataccagtgc
    15121 cagtagccag acttttgaga atatgctgta acagatcatt ccgaggcaaa taagaataat
    15181 gccgggagcc agtcgggcgc ttgcatcgga actgactaag acgtatatcc cct
//
LOCUS       DADMHM010000085        15155 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.086, whole genome shotgun sequence.
ACCESSION   DADMHM010000085 DADMHM010000000
VERSION     DADMHM010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15155)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15155)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15155
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.086"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(652..1848)
                     /gene="hemY"
                     /locus_tag="JN125_002302"
     CDS             complement(652..1848)
                     /gene="hemY"
                     /locus_tag="JN125_002302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoheme IX biogenesis protein HemY"
                     /protein_id="HAY8872070.1"
                     /translation="MLKVLLLFVLLIAGIVVGPMIAGHQGYVLIQTDNYNIETSVTGL
                     AIILILAMVVLFAIEWLLRRIFRTGAHTRGWFVGRKRRRARKQTEQALLKLAEGDYQQ
                     VEKLMAKNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELAGNDTIPVEITRV
                     RLQLARNENHAARHGVDKLLEVTPRHPEVLRLAEQAYIRTGAWSSLLDIIPSMAKAHV
                     GDEEHRAMLEQQAWIGLMDQARADNGSEGLRNWWKNQSRKTRHQVALQVAMAEHLIEC
                     DDHDTAQQIIIDGLKRQYDDRLLLPIPRLKTNNPEQLEKVLRQQIKNVGDRPLLWSTL
                     GQSLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLTL
                     QNNPPQ"
     gene            complement(1851..3128)
                     /gene="hemX"
                     /locus_tag="JN125_002303"
     CDS             complement(1851..3128)
                     /gene="hemX"
                     /locus_tag="JN125_002303"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HAY8872071.1"
                     /translation="MTEQEKTSAVVEETREAVDTTSQPVATEKKSKNNTALILSAVAI
                     AIALAAGVGLYGWGKQQAVNQTATSDALANQLTALQKAQESQKAELEGIIKQQAAQLK
                     QANRQQETLAKQLDEVQQKVATISGSDAKTWLLAQADFLVKLAGRKLWSDQDVTTAAA
                     LLKSADASLADMNDPSLITVRRAITDDIASLSAVSQVDYDGIILKLNQLSNQVDNLRL
                     ADNDSDGSPMDSDGEELSSSISEWRINLQKSWQNFMDNFITIRRRDDTAVPLLAPNQD
                     IYLRENIRSRLLVAAQAVPRHQEETYRQALENVSTWVRAYYDTDDATTKAFLDEVDQL
                     SQQNISMDLPETLQSQAMLEKLMQTRVRNLLAQPAAGTTEAKPAPAPAPAPAPAPAPA
                     PAPAPAPAPAPAPAPAPAPAPQGDTPAAAPQGE"
     gene            complement(3150..3890)
                     /gene="hemD"
                     /locus_tag="JN125_002304"
     CDS             complement(3150..3890)
                     /gene="hemD"
                     /locus_tag="JN125_002304"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HAY8872072.1"
                     /translation="MSILVTRPSPAGEELVSRLRTLGQVAWHFPLIEFSPGRQLPQLA
                     DQLAALGESDLLFALSQHAVAFAQSQLHQQDRKWPRLPDYFAIGRTTALALHTVSGQK
                     ILYPQDREISEVLLQLPELQNIAGKRALILRGNGGRELIGDTLTARGAEVTFCKCYQR
                     CAIHYDGAEEAMRWQSREVTMVVVTSGEMLQQLWSLIPQWYREHWLLRCRLLVVSERL
                     AKLARELGWQDIKVADNADNDALLRALQ"
     gene            complement(3887..4828)
                     /gene="hemC"
                     /locus_tag="JN125_002305"
     CDS             complement(3887..4828)
                     /gene="hemC"
                     /locus_tag="JN125_002305"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HAY8872073.1"
                     /translation="MLDNVLRIATRQSPLALWQAHYVKDKLMTSHPGLVVELVPMVTR
                     GDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICERE
                     DPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLD
                     NGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDARTRELLAA
                     LNHHETALRVTAERAMNTRLEGGCQVPIGSYAELIDGEIWLRALVGAPDGSQIIRGER
                     RGAPQDAEQMGISLAEELLNNGAREILAEVYNGDAPA"
     gene            5215..7761
                     /gene="cyaA"
                     /locus_tag="JN125_002306"
     CDS             5215..7761
                     /gene="cyaA"
                     /locus_tag="JN125_002306"
                     /EC_number="4.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I adenylate cyclase"
                     /protein_id="HAY8872074.1"
                     /translation="MYLYIETLKQRLDAINQLRVDRALAAMGPAFQQVYSLLPTLLHY
                     HHPLMPGYLDGNVPKGICLYTPDETQRHYLNELELYRGMSVQDPPKGELPITGVYTMG
                     STSSVGQSCSSDLDIWVCHQSWLDSEERQLLQRKCSLLESWAASLGVEVSFFLIDENR
                     FRHNESGSLGGEDCGSTQHILLLDEFYRTAVRLAGKRILWNMVPCDEEEHYDDYVMTL
                     YAQGVLTPNEWLDLGGLSSLSAEEYFGASLWQLYKSIDSPYKAVLKTLLLEAYSWEYP
                     NPLLLAKDIKQRLHDGEIVSFGLDPYCMMLERVTEYLTAIEDFTRLDLVRRCFYLKVC
                     EKLSRERACVGWRRAVLSQLVSEWGWDEARLAMLDNRANWKIDQVREAHNELLDAMMQ
                     SYRNLIRFARRNNLSVSASPQDIGVLTRKLYAAFEALPGKVTLVNPQISPDLSEPNLT
                     FIYVPPGRANRSGWYLYNRAPNIESIISHQPLEYNRYLNKLVAWAWFNGLLTSRTRLY
                     IKGNGIVDLPKLQEMVADVSHHFPLRLPAPTPKALYSPCEIRHLAIIVNLEYDPTAAF
                     RNQVVHFDFRKLDVFSFGENQNCLVGSVDLLYRNSWNEVRTLHFNGEQSMIEALKTIL
                     GKMHQDAAPPDSVEVFCYSQHLRGLIRTRVQQLVSECIELRLSSTRQETGRFKALRVS
                     GQTWGLFFERLNVSVQKLENAIEFYGAISHNKLHGLSVQVETNHVKLPAVVDGFASEG
                     IIQFFFEETQDENGFNIYILDESNRVEVYHHCEGSKEELVRDVSRFYSSSHDRFTYGS
                     SFINFNLPQFYQIVKVDGREQVIPFRTKSIGNMPPANQDHDTPLLQQYFS"
     gene            complement(7801..8121)
                     /gene="cyaY"
                     /locus_tag="JN125_002307"
     CDS             complement(7801..8121)
                     /gene="cyaY"
                     /locus_tag="JN125_002307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000999950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron donor protein CyaY"
                     /protein_id="HAY8872075.1"
                     /translation="MNDSEFHRLADQLWLTIEEHLDDWDGDSDIDCEINGGVLTITFE
                     NGSKIIINRQEPLHQVWLATKQGGYHFDLKGDEWICDRSGETFWDLLEQAATQQAGET
                     VSFR"
     gene            8584..8787
                     /locus_tag="JN125_002308"
     CDS             8584..8787
                     /locus_tag="JN125_002308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HAY8872076.1"
                     /translation="MKNVFKVLTVLLTLFSLTGCGLKGPLYFPPADKNAPPPTKPVET
                     QTQSTVPDKNDRATGDGPSQVNY"
     gene            8824..9648
                     /gene="dapF"
                     /locus_tag="JN125_002309"
     CDS             8824..9648
                     /gene="dapF"
                     /locus_tag="JN125_002309"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HAY8872077.1"
                     /translation="MQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFDQ
                     LLVIEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTANG
                     RMVLTVTDDDLVRVNMGEPNFEPSAVPFRANKAEKTYIMRAAEQTILCGVVSMGNPHC
                     VIQVDDVDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQACG
                     SGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL"
     gene            9645..10352
                     /locus_tag="JN125_002310"
     CDS             9645..10352
                     /locus_tag="JN125_002310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF484 domain-containing protein"
                     /protein_id="HAY8872078.1"
                     /translation="MKQPGEELQETLTELDDRAVVDYLIKNPEFFIRNARAVEAIRVP
                     HPVRGTVSLVEWHMARARNHIHVLEENMALLMEQAIANEGLFYRLLYLQRSLTAASSL
                     DDMLMRFHRWARDLGLAGASLRLFPDRWRLGAPSNHTHLALSRQSFEPLRIQRLGQEQ
                     HYLGPLNGPELLVVLPEAKAVGSVAMSMLGSDADLGVVLFTSRDASHYQQGQGTQLLH
                     EIALMLPELLERWIERV"
     gene            10349..11245
                     /gene="xerC"
                     /locus_tag="JN125_002311"
     CDS             10349..11245
                     /gene="xerC"
                     /locus_tag="JN125_002311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HAY8872079.1"
                     /translation="MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENG
                     LQSWQQCDVTMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVS
                     APKAPRHLPKNIDVDDMNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHL
                     DLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISAR
                     NVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYT
                     HLDFQHLASVYDAAHPRAKRGK"
     gene            11245..11961
                     /gene="yigB"
                     /locus_tag="JN125_002312"
     CDS             11245..11961
                     /gene="yigB"
                     /locus_tag="JN125_002312"
                     /EC_number="3.1.3.104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-amino-6-(5-phospho-D-ribitylamino)uracil
                     phosphatase YigB"
                     /protein_id="HAY8872080.1"
                     /translation="MRFYRPLGRISALTFDLDDTLYDNRPVILRTEREALTFVQNYHP
                     ALRSFQNEDLQRLRQAVREAEPEIYHDVTRWRFRSIEQAMLDAGLSAEEASAGAHAAM
                     INFAKWRSRIDVPQQTHDTLKQLAKKWPLVAITNGNAQPELFGLGDYFEFVLRAGPHG
                     RSKPFSDMYFLAAEKLNVPIGEILHVGDDLTTDVGGAIRSGMQACWIRPENGDLMQTW
                     DSRLLPHLEISRLASLTSLI"
     gene            12045..14207
                     /gene="uvrD"
                     /locus_tag="JN125_002313"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
     CDS             12045..14207
                     /gene="uvrD"
                     /locus_tag="JN125_002313"
                     /gene_synonym="mutU"
                     /gene_synonym="recL"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase II"
                     /protein_id="HAY8872081.1"
                     /translation="MDVSYLLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIA
                     WLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHH
                     MDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQ
                     SYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNIL
                     VDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAET
                     IRLEQNYRSTSNILSAANALIENNNGRLGKKLWTDGADGEPISLYCAFNELDEARFVV
                     NRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDAL
                     SYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKAL
                     AGRAASALQRFMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIEN
                     LEELVTATRQFSYNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTMHSAKGLE
                     FPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKE
                     VYHRPSRFIGELPEECVEEVRLRATVSRPVSHQRMGTPMVENDSGYKLGQRVRHAKFG
                     EGTIVNMEGSGEHSRLQVAFQGQGIKWLVAAYARLETV"
     gene            complement(14252..15154)
                     /locus_tag="JN125_002314"
     CDS             complement(14252..15154)
                     /locus_tag="JN125_002314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-adenosyl-l-methionine hydroxide
                     adenosyltransferase family protein"
                     /protein_id="HAY8872082.1"
                     /translation="MKKTLATLFLLTCLGSSSAYADNALILQTDFSLKDGAVSAMKGV
                     AFGVDHNLKIFDLTHEIPPYNIWEGAYRLYQTASYWPQGSVFVSVVDPGVGTDRKSVV
                     LKTKNGQYFVSPDNGTLTLVAQTLGIDSVREIDEKANRLKGSEKSYTFHGRDVYAYTG
                     ARLASGAITFEQVGPELPAKVVELSYQKAKATKGEVKGNIPILDIQYGNVWSNISDEL
                     LNQAEIKLNDTLCVTISEGSQQKYAGKMPYVASFGDVPEGQPMVYLNSLLNVSVALNM
                     DNFAQKHQVASGADWNIDVKKCAK"
BASE COUNT         3437 a         3946 c         4104 g         3668 t
ORIGIN      
        1 aaaatgatga cgtaattaag cattgataat tgagatccct ctccctgaca ggatgattac
       61 ataaataata gtgacaaaaa taaattattt atttatccag aaaatgaatt ggaaaatcag
      121 gagagcgttt tcaatcctac ctctggcgca gttgatatgt aaggcaggtt tattatatcg
      181 cgttgattat tgatgctttt ttagttttaa cggcaattaa tatatgtgtt attaattgaa
      241 tgaattttat cattcataat aagtatgtgt aggatcaagc tcaggttaaa tattcactca
      301 ggaagttatt actcaggaag caaagaggat tacagaatta tctcataaca agtgttaagg
      361 gatgttattt cccgattctc tgtggcataa taaacgagta gatgctcatt ccatctctta
      421 tgttcgcctt agtgcctcat aaactccgga atgacgcaga gccgtttacg gtgcttatcg
      481 tccactgaca gatgtcgctt atgcctcatc agacaccatg gacacaacgt tgagtgaagc
      541 acccacttgt tgtcatacag acctgtttta acgcctgctc cgtaataaga gcaggcgttt
      601 ttttatgcat cagaaaggtc ccggaggtgc ttgcctccgg gtgagaagga actactgtgg
      661 tgggttgttc tgcaacgtta acatcaaacc gtcgcgacgc atcgctgcag cttcttccgg
      721 cttgtgcagt ctgtccagcg cgtcggcaag ccatgcgtaa tcgtaggcgt ccggacgttg
      781 tttcagcgct gcgcggaagg cgagcgatgc ttcctgccat tctccgtgct tcatcagtga
      841 ctggcccagt gtgctccaca acagcgggcg atcgccgacg tttttgatct gctggcgcag
      901 cactttttcc agctgttccg gattgttggt tttcagtcga ggaatcggca gcagtaggcg
      961 atcgtcgtac tggcgtttca ggccatcgat gataatttgc tgggcagtat catgatcgtc
     1021 acattcaata agatgttccg ccattgccac ctgcaacgct acttgatgac gcgttttccg
     1081 gctttggttt ttccaccagt tacgcaaacc ttcactaccg ttatcggcac gcgcctgatc
     1141 catcaggcca atccatgcct gttgttccag cattgcacga tgttcttcat caccaacatg
     1201 ggctttcgcc attgatggga tgatatccag cagagaactc catgcacctg tgcggatata
     1261 cgcctgttcc gccagacgta atacttccgg atggcgtggc gtaacttcca gcagcttatc
     1321 cacgccgtgg cgtgcagcat ggttttcatt acgggccagt tgcagacgta cacgggtgat
     1381 ttctaccgga atggtgtcat tgccggccag ctccgctgcg cgttccagat gttggttggc
     1441 gcgcgcttca tcaccacgtt gttgcgcggc ttcggcagcc agtagatagt tcaccaccgg
     1501 ttgttcagcg tgatcggcat ttttcgccat cagcttttca acttgctgat aatcgccttc
     1561 cgccagtttc agcagcgcct gttcggtctg cttacgtgca cggcgacgct tacgcccgac
     1621 aaaccaccca cgggtgtgcg cgccagtgcg gaagatccgc cgcagtagcc actcaatggc
     1681 aaacagcact accatcgcca gaatcaatat gatcgccagg cccgtgacgc tggtttcgat
     1741 attgtagttg tcggtctgga tcagcacata accctgatga ccggcaatca tcgggccaac
     1801 cactatcccc gcaatcagca aaacaaagag taataacact tttagcatgg ttattctcct
     1861 tgcggcgcgg ctgccggagt atcaccttgc ggtgcaggtg caggtgcagg tgcaggtgca
     1921 ggtgcaggtg caggtgcagg tgcaggtgca ggtgcaggtg caggtgcagg cgcaggtgca
     1981 ggcgcaggtg caggtgcagg tttagcttcc gttgtccctg ctgccggttg tgccagcagg
     2041 ttacgcacgc gagtctgcat cagtttttcc agcatcgcct ggctttgcag ggtttccgga
     2101 agatccatcg agatattttg ctggcttaac tggtccacct cgtcgaggaa cgctttggtg
     2161 gtggcatcat cagtatcgta gtaagcacgt acccaggtgg agacgttctc cagcgcctgg
     2221 cgataagtct cttcctggtg acgcggtaca gcttgtgctg cgaccagcag gcgagagcga
     2281 atattttcgc gcagatagat atcctgattt ggcgctaaca gcggtacggc ggtgtcatca
     2341 cgacggcgaa tcgtaatgaa gttgtccata aagttctgcc agcttttttg cagattgata
     2401 cgccattcgc tgatggaact ggaaagctct tcaccgtcgg aatccatcgg cgaaccatcg
     2461 ctgtcattat cggccagacg caggttatct acctgatttg aaagctgatt aagcttaagg
     2521 atgatgccgt cataatccac ctgcgaaact gcagaaaggc tggcgatatc atcggtaatt
     2581 gcccgacgaa cggtaatcag actcgggtca ttcatatccg ccaggctggc atctgcactt
     2641 ttcagcaacg ctgcagcggt cgtgacgtcc tgatcgctcc acagcttccg tccggcgagt
     2701 ttcaccagaa aatcggcctg agccagcagc caggttttag catcgctgcc ggaaatggtg
     2761 gcgacctttt gttggacttc atccaactgt tttgccagcg tttcttgctg acgattcgcc
     2821 tgcttaagct gtgcagcttg ttgcttaata atgccttcca gctcggcttt ttggctctcc
     2881 tgggcttttt gcaatgccgt cagttggtta gccagggcat cgctggtggc ggtctgattg
     2941 acggcctgtt gtttacccca gccatacaaa ccgacgcccg ccgccagagc aatagcgata
     3001 gccaccgcgc tgagaatcaa tgcggtattg ttcttactct ttttttctgt tgcgacaggt
     3061 tgtgacgtgg tgtccacggc ctccctggtc tcttcaacca cggcggaggt tttttcttgt
     3121 tccgtcatta tggcttcctg ttatgagagt tattgtaatg cccgtaaaag cgcatcgttg
     3181 tcagcgttat cggcgacctt aatgtcttgc cagcccagtt cccgggcgag tttcgccaaa
     3241 cgctcactga cgaccaatag tcgacagcgt agtaaccagt gctcacgata ccattgtggg
     3301 atcagcgacc agagttgctg caacatttca ccgctggtaa caacgaccat cgtcacctcg
     3361 cgggattgcc agcgcatcgc ttcttctgca ccatcgtaat ggattgcgca tcgttgataa
     3421 catttacaaa aagtgacctc agcaccgcgc gctgtcaggg tatccccaat tagctcacga
     3481 ccgccattgc cacgtaatat cagcgcacgt ttgcccgcaa tattttgtaa ttcaggtaat
     3541 tgtagcaaga cttcgctgat ttcccgatcc tgcgggtaga gaatcttctg tccgcttacg
     3601 gtatgtagcg ccagtgcggt ggtgcgtcca atggcgaaat aatcaggtag tcggggccat
     3661 ttacgatctt gctgatgcag ctgtgattgg gcaaaagcaa ccgcgtgttg cgagagggca
     3721 aacaacagat cgctctcccc cagcgccgcc agttgatcag caagttgtgg taattgtcga
     3781 cccggagaaa actcaatcag cggaaaatgc caggccacct gccccagtgt gcgcagacgg
     3841 ctcactaact cttctccagc gggagacggg cgggtgacca ggatactcat gccggggcgt
     3901 ctccgttata gacttcagcg aggatctcgc gcgcgccgtt attcagtagc tcttctgcca
     3961 gcgaaatccc catttgttcg gcatcttgcg gcgcaccgcg gcgttcaccg cgaataatct
     4021 gcgaaccgtc cggcgcgccg accagcgcac gcagccagat ttcaccatca ataagctcgg
     4081 cgtagctacc aattggcacc tgacatccgc cttcgagacg ggtattcatg gcgcgttctg
     4141 cggtaacgcg cagtgcagtt tcgtggtgat tcagcgcggc aagcagctcg cgagtgcgtg
     4201 catcatcaag gcggcattca ataccgaccg caccttgtcc taccgctgga agagaaatct
     4261 cgggtggtaa cgcggcgcga atgcgggact ccagacctaa acgttttagt ccggctacag
     4321 caagaatgat ggcatcgtat tcgccgttat ctagtttgct caggcgagtg ccgacgttgc
     4381 cgcgcaggga gcggataatc agatccgggc ggcgttcagc cagttggcac tggcgacgta
     4441 aactggacgt cccgacgata ctgcctgctg gtaacgcatc cagactgtca tagttattgg
     4501 acacaaaggc atcgcgagga tcttcacgct cacaaatagt gaccagtccc agaccttgcg
     4561 ggaattcaac cggcacatct ttcattgaat gtacggcgat atcggcgcga ttttcgagga
     4621 gcgcgacttc cagctctttt acaaataagc cttttccgcc tactttcgcc agcggcgtat
     4681 caagaatcac atcgccgcgc gtcaccatcg gtaccagttc aacgaccagg cccggatggc
     4741 tcgtcatcaa cttgtctttg acatagtgtg cctgccagag tgcaagtggg ctttggcgtg
     4801 tggcaattct taaaacattg tctaacatgc ttgttaccgt cattatcatc cgtggtccat
     4861 cctaacatcc ttgccagagt gatgtcagtg ttgtggtgaa acgtagacgc ctgcgcaaac
     4921 cgtaaaatga ggtctggcag tggatcctga caggcgtttc acgccgtcgt aataaggaat
     4981 ttacagagaa taaacggtgc tacacttgta tgtagcgcat ctttctttac ggtcaattag
     5041 caaggtgtta aattgatcac gttttagacc attttttcgt cgtgaaacta aaaaaaccag
     5101 gcgcgaaaag tggtaacggt tacctttgac atacgaaata tcccgaatgc cgcgtgttac
     5161 cgttgatgtt ggcggaatca cagtcatgac gggtagcaaa tcaggcgata cgtcttgtac
     5221 ctctatattg agactctgaa acagagactg gatgccataa atcaattgcg tgtggatcgc
     5281 gcgcttgctg ctatggggcc tgcattccaa caggtctaca gtctactgcc gacattgttg
     5341 cactatcacc atccgctaat gccgggttac cttgatggta acgttcccaa aggcatttgc
     5401 ctttacacgc ctgatgaaac tcaacgccac tacctgaacg agcttgaact gtatcgtgga
     5461 atgtcagtac aggatccacc gaaaggtgag cttccaatta ctggtgtata caccatgggc
     5521 agcacctcgt ccgtagggca aagttgttcc tctgacttgg atatctgggt ctgtcatcaa
     5581 tcctggctcg atagcgaaga gcgccagtta ctacaacgta aatgtagtct gctggaaagc
     5641 tgggccgcct cgctgggtgt ggaagtcagc ttcttcctga ttgatgaaaa ccgcttccgt
     5701 cataatgaaa gcggcagcct ggggggcgaa gattgtggct ccacccagca tatactgctg
     5761 cttgacgaat tttatcgtac cgccgtgcgt ctcgccggta agcgtattct gtggaatatg
     5821 gtgccgtgcg acgaagaaga gcattacgac gactatgtga tgacgcttta cgcgcagggc
     5881 gtgctgacgc caaatgaatg gctggatctc ggtggcttaa gctcgctttc tgctgaagag
     5941 tactttggtg ccagcctttg gcagctctac aagagtatcg attccccata caaagcggta
     6001 ctgaaaacac tgctgctgga agcctattcc tgggaatacc cgaacccact tctgctggcg
     6061 aaagatatca aacagcgttt gcacgacggt gagattgtat cgtttggtct cgatccatac
     6121 tgcatgatgc tggagcgtgt tactgaatac ctgacggcga ttgaagattt tacccgtctg
     6181 gatttagtac gtcgctgctt ctatttaaaa gtgtgcgaaa agctcagccg tgaacgcgcc
     6241 tgcgtaggct ggcgtcgcgc agtgttgagc cagttagtga gcgagtgggg ttgggacgaa
     6301 gctcgtctgg caatgctcga taaccgcgct aactggaaga ttgatcaggt gcgtgaggcg
     6361 cacaacgagt tgctcgacgc gatgatgcag agctaccgta atctgatccg ctttgcgcgt
     6421 cgcaataacc ttagcgtctc cgccagtccg caggatatcg gcgtgctgac gcgtaagctg
     6481 tatgccgcgt ttgaagcatt accaggtaaa gtgacgctgg taaacccgca gatttcaccc
     6541 gatctctcgg aaccgaatct gacctttatt tatgtgccgc cgggccgtgc taaccgttca
     6601 ggttggtatc tgtataaccg cgcgccaaat attgagtcga tcatcagcca tcagccgctg
     6661 gaatataacc gttacctgaa caaactggtg gcgtgggcat ggtttaacgg cctgctgacc
     6721 tcgcgcaccc gtttgtatat taaaggtaac ggcattgtcg atttgcctaa gttgcaggag
     6781 atggtcgccg acgtgtcgca ccatttcccg ctgcgcttac ctgcaccgac accgaaggcg
     6841 ctctacagcc cgtgtgagat ccgccatctg gcgattatcg ttaacctgga atatgacccg
     6901 acagcggcgt tccgcaatca ggtggtgcat tttgatttcc gtaagctgga tgtcttcagc
     6961 tttggcgaga atcaaaattg cctggtaggt agcgttgacc tgctgtaccg caactcgtgg
     7021 aacgaagtgc gtacgctgca cttcaacggc gagcaatcga tgatcgaagc cctgaaaact
     7081 attctcggca aaatgcatca ggacgccgca ccgccagata gcgtggaagt cttctgttat
     7141 agccagcatc tgcgcgggtt aatccgtact cgcgtgcagc aactggtttc tgagtgtatt
     7201 gaactgcgcc tttccagcac ccgccaggaa accgggcgtt tcaaggcgct gcgcgtttct
     7261 ggtcaaacct ggggcttgtt cttcgaacgc ctgaatgtat cggtacagaa gctggagaac
     7321 gccatcgagt tttatggcgc tatttcgcat aacaaactgc acggcctgtc agtgcaggtt
     7381 gaaaccaatc acgtcaaatt accggcggtg gtggacggct ttgctagtga agggatcatc
     7441 cagttcttct tcgaagaaac gcaagacgag aatggcttta atatctacat tcttgacgaa
     7501 agcaaccggg ttgaggtgta tcaccactgc gaaggcagca aagaggaact ggtgcgtgac
     7561 gtcagtcgct tctactcgtc atcgcacgac cgcttcacct acggctcaag cttcatcaac
     7621 ttcaacctgc cgcagttcta tcagattgtg aaggttgatg gtcgtgaaca ggtgattccg
     7681 ttccgcacaa aatctatcgg taacatgccg cctgccaatc aggatcacga tacgccgcta
     7741 ttacagcaat atttttcgtg atgaacgtgc cggaaagcga ggcttatccg gcatgcaatc
     7801 ttagcggaaa ctgactgttt cacccgcctg ctgcgtcgcc gcctgttcca gcaaatccca
     7861 gaaggtttcg ccgctgcgat cgcaaatcca ctcatcgcct ttcagatcaa aatggtagcc
     7921 gccttgtttg gttgccagcc atacctggtg cagcggttcc tggcggttga taatgatttt
     7981 gctgccgttt tcaaaggtaa tggtcagcac gccgccgttg atttcgcagt cgatatcgct
     8041 gtcgccatcc cagtcgtcca gatgctcttc aatggtcagc cacagttgat cagccaggcg
     8101 atgaaattca ctgtcgttca ttgttgtatc ctgtttttaa gtgatggcgg cagtatagcg
     8161 gcatggggtc agggcttcaa agtttgcacc tctgctgctg cgttccggca tgattcatcc
     8221 gtcaccggaa taatgatgtc tctgtgtggc gaaagatttg tctcttcatt agggcgcagt
     8281 tacaccacgc ctttccctgt ttctggtaaa cattatgatc aggtttaccg agcgagcatc
     8341 ctcacgctga cggaactaaa aaagccaaca aacaaaccac attgcgatag tgcataaagc
     8401 catcctggcg cgaggtgccg atcacgaaac tgccagcaga acataaatcc tcacgagtaa
     8461 gcgttatact cgcagcattt cctcactttt cagacttcat aaagagtcgc taaacgcttg
     8521 cttttacgcc ttctcctgcg atgatagaaa gcagaaagcg atgaacttta caggcaatcc
     8581 ataatgaaaa acgtgtttaa ggtactcact gtattactta ctctcttcag cctgacgggc
     8641 tgcggtctga aaggtccgct ctatttcccg cctgcagata aaaatgcacc gccgccgacc
     8701 aaaccggtag agacgcaaac gcaatccacg gtgccggata aaaacgatcg cgccactggc
     8761 gatggtccat cccaggtgaa ttactaaaag tcagtttctg tacccgcgtg attggagtaa
     8821 atgatgcagt tctcgaaaat gcatggcctt ggcaacgatt ttatggtcgt cgacgcggta
     8881 acgcagaatg tctttttttc accggagctg attcgtcggc tggcggatcg gcacctgggg
     8941 gtagggtttg accagctgct ggtgattgag ccgccgtatg atcctgaact ggattttcac
     9001 tatcgcattt tcaatgctga tggcagtgaa gtggcgcagt gcggcaacgg tgcgcgctgc
     9061 tttgcccgtt ttgtgcgcct gaaagggctg accaataagc gcgatatccg cgtcagcacc
     9121 gccaacgggc ggatggttct gaccgtcacc gatgatgatc tggtccgcgt aaatatgggc
     9181 gaacccaact tcgaaccttc cgctgtgccg tttcgcgcta acaaagcgga aaagacctat
     9241 attatgcgcg ccgccgagca gacaatctta tgcggcgtgg tgtcgatggg aaatccgcat
     9301 tgcgtgattc aggtcgatga tgtcgatacc gcggcggtag aaacgcttgg tcctgttctg
     9361 gaaagccacg agcgttttcc ggagcgcgcc aatatcggtt ttatgcaagt ggttaagcgc
     9421 gagcatattc gtttacgcgt ttatgagcgt ggggcaggag aaacccaggc ctgcggcagc
     9481 ggcgcgtgtg cggcggttgc agtagggatt cagcaaggtt tgctggccga agaagtacgc
     9541 gtggaactcc ccggcggtcg tcttgatatc gcctggaaag gtccgggtca cccgttatat
     9601 atgactggcc cggcggtaca tgtctatgac ggatttattc atctatgaag caaccagggg
     9661 aagaactgca ggaaacactc acggagcttg atgaccgggc ggttgtcgat tatctgatta
     9721 aaaatcctga gttttttatc cgtaatgcgc gcgcagtaga agcgatacgt gtgccgcatc
     9781 cggtacgcgg caccgtttcg ttggtcgagt ggcacatggc ccgcgcacgt aatcatattc
     9841 atgttctgga agagaacatg gcgctgttga tggaacaggc tatcgccaac gaaggcctgt
     9901 tttatcgcct actctacctg cagcgcagtc tcaccgccgc cagcagtctc gacgatatgc
     9961 tgatgcgctt tcaccgctgg gcgcgcgatc tcggcctggc aggtgcgagt ctgcgcctgt
    10021 ttccggatcg ctggcgctta ggtgcgccgt cgaaccacac tcatctggca ttaagccgtc
    10081 agtctttcga accgctgcgt attcagcgtt tggggcagga acagcactat cttgggccgc
    10141 ttaacggacc agagctgctg gtggtgctac cggaagcgaa agcggtggga tcggtggcga
    10201 tgtcgatgct gggaagcgat gctgatttgg gtgtcgtgct gtttaccagt cgcgatgcca
    10261 gtcactatca acaagggcaa ggaacgcagt tacttcatga aattgcgctg atgttgccgg
    10321 agcttctgga gcgttggatt gaacgcgtat gaccgattta cacaccgatg tagaacgcta
    10381 cctacgttat ctgagcgtgg agcgccagct tagcccgata accctgctta actaccagcg
    10441 tcagcttgag gcgatcatca attttgccag cgaaaacggc ctgcaaagct ggcagcaatg
    10501 tgatgtgacg atggtgcgca attttgctgt acgcagtcgc cgtaaagggc tgggagcagc
    10561 aagtctggcg ttacggcttt ctgcgctacg tagctttttt gactggctgg tcagccagaa
    10621 cgaactcaaa gctaacccgg cgaaaggtgt ttcggcaccg aaagcgccgc gtcatctgcc
    10681 gaaaaatatc gacgtcgacg atatgaatcg gctgctggat attgatatca acgatcccct
    10741 cgctgtacgc gaccgtgcaa tgctggaagt gatgtacggc gctggtctgc gtctttccga
    10801 gctggtgggg ctggatatca aacacctcga cctggagtct ggtgaagtgt gggtaatggg
    10861 gaaaggcagc aaagagcgcc gcctgccgat tggtcgcaac gctgtggcgt ggattgagca
    10921 ctggcttgat ttgcgcgacc tgtttggtag cgaagacgac gcgctttttc tgtcgaaact
    10981 gggcaagcgt atctccgcgc gtaatgtgca gaaacgcttt gccgaatggg gcataaaaca
    11041 agggctgaat aatcacgttc acccacataa attacgtcac tcgttcgcta cgcatatgct
    11101 ggagtcgagc ggcgatcttc gtggtgtgca ggagctactg ggtcatgcca acctctccac
    11161 cacgcaaatc tatactcatc ttgattttca acaccttgcc tcggtgtacg atgcggcgca
    11221 tccacgcgcc aaacggggga aataatgcgt ttttaccggc ctttggggcg catctcggcg
    11281 ctcacctttg acctggatga taccctttac gataaccgtc cggtgatttt gcgcaccgag
    11341 cgagaggcgc ttacctttgt gcaaaattat catccggcgc tgcgcagctt ccagaatgaa
    11401 gatctgcaac gcctgcgcca ggcggtacgg gaagcggaac ccgagattta tcacgacgtg
    11461 acgcgctggc gttttcgttc gattgaacaa gcgatgctcg acgccgggct gagtgccgaa
    11521 gaagccagtg caggcgcaca cgcagcaatg atcaactttg ccaaatggcg cagccgaatc
    11581 gacgtcccgc agcaaactca cgacacctta aaacagctgg cgaagaaatg gccgctggtg
    11641 gcgatcacca acggtaacgc ccagccggaa ctgtttggtt tgggggatta ttttgagttt
    11701 gtgctgcgcg ctggcccgca cgggcgctca aaaccgttca gcgatatgta ctttctggct
    11761 gcggaaaaac tcaacgtgcc gatcggcgag atcttacatg ttggggacga tctcaccact
    11821 gacgtgggtg gggcaattcg cagcggaatg caggcctgtt ggatcagacc ggaaaatggc
    11881 gatctgatgc aaacctggga cagccgttta ctgccgcatc tggaaatttc ccggttggca
    11941 tctctgacct cgctgatata atcagcaaat ctgtatatat acccagcttt ttggcggagg
    12001 gcgttgcgct tctccgccca acctattttt acgcggcggt gccaatggac gtttcttacc
    12061 tgctcgacag ccttaatgac aaacagcgcg aagcggtggc cgcgccacgc agcaaccttc
    12121 tggtgctggc gggcgcgggc agtggtaaga cgcgcgtact ggtgcatcgt atcgcctggc
    12181 tgatgagcgt ggaaaactgc tcgccatact cgattatggc ggtgacgttt accaacaaag
    12241 cggcggcgga gatgcgtcat cgtatcgggc agctaatggg caccagccag ggcggcatgt
    12301 gggtcggcac cttccacggg ctggcgcacc gtctgctgcg tgcgcaccat atggacgcca
    12361 atctgccgca ggattttcag atcctcgaca gcgaggacca gctacgcctg ctcaaacgcc
    12421 taatcaaggc gatgaacctc gacgagaagc agtggccgcc gcgccaggca atgtggtaca
    12481 tcaacagcca gaaagatgaa ggcctgcgtc cacatcatat tcaaagctac ggtaatccgg
    12541 tggagcagac ctggcagaag gtgtatcagg cgtatcagga agcgtgtgac cgcgcgggcc
    12601 tggtggactt cgccgagctg ctgctgcgcg ctcacgagtt gtggcttaac aagccgcata
    12661 tcctgcaaca ctaccgcgaa cgttttacca atatcctggt ggacgaattc caggatacca
    12721 acaacattca gtacgcgtgg atccgcctgc tggcgggcga caccggcaaa gtgatgatcg
    12781 tcggtgatga cgaccagtca atctacggct ggcgcggggc gcaggtggag aatattcagc
    12841 gtttccttaa tgatttcccc ggtgccgaaa ctattcgtct ggagcaaaac taccgctcta
    12901 ccagcaatat tctgagcgcc gctaacgccc tgattgaaaa caataacggg cgtctgggta
    12961 aaaaactgtg gaccgatggc gcggacggtg agcctatttc cctctattgc gcttttaacg
    13021 aactcgatga agcgcgtttt gtggttaacc gcatcaaaac ctggcaggac aacggcgggg
    13081 cgcttgccga gtgcgccatt ctctaccgca gtaacgccca gtcgcgtgtg ctggaagaag
    13141 cactgttgca ggcgagtatg ccgtaccgta tttacggcgg gatgcgcttc ttcgaacgcc
    13201 aggaaatcaa agatgcgctc tcgtatctgc gcctgattgc caaccgtaac gacgacgcgg
    13261 cctttgagcg tgtggtgaat acgccaacgc ggggtattgg tgaccggacg ctggacgtgg
    13321 tacgtcagac atcgcgcgat cgccagttaa cactctggca ggcatgtcgt gaactgttgc
    13381 aggaaaaagc cctcgccgga cgtgctgcca gcgccttaca gcggtttatg gaactgatcg
    13441 acgccttagc gcaggaaact gccgatatgc cgctgcatgt acagactgac cgggtaatta
    13501 aagactccgg cctgcgtacc atgtacgagc aggagaaggg cgaaaaaggt cagacgcgta
    13561 tcgaaaactt agaggaactg gtgacggcaa cgcgccagtt cagctacaac gaagaagacg
    13621 aagatttaat gccgctgcag gcgttcctat cccatgcggc gctggaagca ggcgaagggc
    13681 aggcggatac ctggcaggat gcggtacaac tgatgaccat gcactcggcg aaaggtctgg
    13741 agttcccgca ggtgtttatc gtcggtatgg aagagggcat gttcccaagc cagatgtcgc
    13801 tggatgaagg cgggcgtctg gaagaagaac gccgtctggc ctacgttggc gtaacccgcg
    13861 cgatgcagaa actgacgctg acctacgcgg aaactcgccg tctgtatggc aaagaggttt
    13921 accatcgccc gtcgcgcttt attggcgagc tgccggaaga gtgtgtggaa gaggtgcgcc
    13981 tgcgcgccac ggtaagccgc ccggtcagcc atcagcggat gggtacgccg atggtcgaga
    14041 acgacagcgg ctacaagctc ggccagcgtg tacgccacgc taagtttggt gaaggcacca
    14101 tcgtcaatat ggaaggcagc ggtgaacata gccgtttgca ggtggcattc cagggccagg
    14161 gtattaaatg gctggtggcg gcttatgccc ggttggagac ggtgtgacgt tgcgggatgc
    14221 ggtgcgccac accgcattcc gcatcagcac cttacttagc gcacttcttc acatcaatat
    14281 tccagtcagc accagacgca acctgatgtt tctgcgcgaa attatccata ttcagcgcca
    14341 cggaaacatt caataagctg ttcagataca ccatcggctg gccttccggc acatcgccga
    14401 agcttgcgac atacggcatt ttccctgcgt atttttgctg ggaaccttcg gaaatggtca
    14461 cacacaacgt gtcgttgagt ttgatttctg cctgattcag caactcgtcg ctgatattgc
    14521 tccagacgtt gccgtactga atatcgagaa tcgggatatt gcccttcact tcaccttttg
    14581 ttgcttttgc tttctgataa gaaagttcga caacttttgc tggaagctct ggccccacct
    14641 gttcgaacgt aatcgccccg gaagccagac gtgcaccggt gtaggcatac acgtcacgac
    14701 cgtggaaggt atatgacttt tcagaacctt tcaggcggtt agctttttcg tcgatttccc
    14761 ggacgctatc aatacccaga gtttgtgcca ccaaagtgag cgtaccgtta tctggtgaaa
    14821 cgaagtattg accgtttttg gttttcagca ctaccgattt acggtcagtg cctacgcccg
    14881 gatcgaccac gctaacaaac accgaacctt gcggccagta actggcagtc tgatacaggc
    14941 gataagcgcc ttcccagatg ttatacggtg gaatttcgtg tgttaaatca aagattttaa
    15001 gattatggtc aacgccgaat gcgacccctt tcatcgccga gacggcacca tctttcaggc
    15061 taaaatcagt ttgtaaaatc aaagcgttat ccgcataggc ggatgatgat cccagacacg
    15121 ttaataaaaa taacgttgcg agcgtttttt tcatt
//
LOCUS       DADMHM010000086        15150 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.087, whole genome shotgun sequence.
ACCESSION   DADMHM010000086 DADMHM010000000
VERSION     DADMHM010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15150)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15150)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15150
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.087"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(118..1401)
                     /gene="gltA"
                     /locus_tag="JN125_002315"
     CDS             complement(118..1401)
                     /gene="gltA"
                     /locus_tag="JN125_002315"
                     /EC_number="2.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate (Si)-synthase"
                     /protein_id="HAY8872083.1"
                     /translation="MADTKAKLTLNGDTAVELDVLKGTLGQDVIDIRTLGSKGVFTFD
                     PGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPTQEQYD
                     EFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREI
                     AAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILER
                     AMDRILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKML
                     EEISSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKD
                     DLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGW
                     IAHWSEMHSDGMKIARPRQLYTGYEKRDFKSDIKR"
     gene            complement(1607..1714)
                     /locus_tag="JN125_002316"
     CDS             complement(1607..1714)
                     /locus_tag="JN125_002316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872084.1"
                     /translation="MRKSYEVGISPKINLCNSVEVLTNSFGTVISGRQV"
     gene            2095..2499
                     /gene="sdhC"
                     /locus_tag="JN125_002317"
                     /gene_synonym="cybA"
                     /gene_synonym="dhsC"
     CDS             2095..2499
                     /gene="sdhC"
                     /locus_tag="JN125_002317"
                     /gene_synonym="cybA"
                     /gene_synonym="dhsC"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000263334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase cytochrome b556 subunit"
                     /protein_id="HAY8872085.1"
                     /translation="MWALFMIRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFV
                     AVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFG
                     YLEETFEAGKRSAKISFVITVVLSLLAGVLVW"
     gene            2493..2840
                     /gene="sdhD"
                     /locus_tag="JN125_002318"
                     /gene_synonym="cybS"
                     /gene_synonym="dhsD"
     CDS             2493..2840
                     /gene="sdhD"
                     /locus_tag="JN125_002318"
                     /gene_synonym="cybS"
                     /gene_synonym="dhsD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase membrane anchor subunit"
                     /protein_id="HAY8872086.1"
                     /translation="MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELT
                     YEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYAKPLALRLMLQLVIVVALV
                     VYVIYGFVVVWGV"
     gene            2840..4606
                     /gene="sdhA"
                     /locus_tag="JN125_002319"
     CDS             2840..4606
                     /gene="sdhA"
                     /locus_tag="JN125_002319"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase flavoprotein subunit"
                     /protein_id="HAY8872087.1"
                     /translation="MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS
                     HTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHM
                     GLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTI
                     FSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHIN
                     TGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERY
                     APNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELS
                     RTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACV
                     SVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALRDASESDVEASLDRLNRWNNN
                     RNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNT
                     QRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPESESM
                     TRRSVNMEPKLRPAFPPKIRTY"
     gene            4622..5338
                     /locus_tag="JN125_002320"
     CDS             4622..5338
                     /locus_tag="JN125_002320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit"
                     /protein_id="HAY8872088.1"
                     /translation="MRLEFSIYRYNPDVDDAPRMQDYTLEAEEGRDMMLLDALIQLKE
                     KDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRD
                     LVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCP
                     SFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPK
                     GLNPTRAIGHIKSMLLQRNA"
     gene            5639..8440
                     /gene="sucA"
                     /locus_tag="JN125_002321"
     CDS             5639..8440
                     /gene="sucA"
                     /locus_tag="JN125_002321"
                     /EC_number="1.2.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase E1 component"
                     /protein_id="HAY8872089.1"
                     /translation="MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRST
                     FQQLPGTGVKPDQFHSQTREYFRRLAKDASRYSSTISDPDTNVKQVKVLQLINAYRFR
                     GHQHANLDPLGLWQQDKVADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLEAL
                     KQTYCGPIGAEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLG
                     AKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQ
                     DLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSV
                     RARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQV
                     GFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFI
                     DLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNL
                     YRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPE
                     AVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFF
                     HRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIW
                     EAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQL
                     CAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGT
                     FLPAIGEIDELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAM
                     QEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGY
                     MSVHQKQQQDLVNDALNVE"
     gene            8455..9672
                     /gene="odhB"
                     /locus_tag="JN125_002322"
     CDS             8455..9672
                     /gene="odhB"
                     /locus_tag="JN125_002322"
                     /EC_number="2.3.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate dehydrogenase complex
                     dihydrolipoyllysine-residue succinyltransferase"
                     /protein_id="HAY8872090.1"
                     /translation="MSSVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDK
                     VVLEVPASADGILDAVLEDEGTTVTSRQILGRLREGNSAGKETSAKSEEKASTPAQRQ
                     QASLEEQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAKSPAKESAP
                     AAAAPAAQPALAARSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRK
                     QYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTP
                     RGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMS
                     TPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIK
                     ELLEDPTRLLLDV"
     gene            9948..11114
                     /gene="sucC"
                     /locus_tag="JN125_002323"
     CDS             9948..11114
                     /gene="sucC"
                     /locus_tag="JN125_002323"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012133271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HAY8872091.1"
                     /translation="MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWV
                     VKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAAT
                     DIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPQLIHKVALDPLTGPMPYQG
                     RELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGA
                     DGNALFRQLDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIV
                     KLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKVVLVNIFGGIVRCDLIADGIIG
                     AVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAVEGK"
     gene            11114..11983
                     /gene="sucD"
                     /locus_tag="JN125_002324"
     CDS             11114..11983
                     /gene="sucD"
                     /locus_tag="JN125_002324"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HAY8872092.1"
                     /translation="MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKG
                     GTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPT
                     LDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYE
                     AVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEA
                     AAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRS
                     LADIGEALKTVLK"
     gene            complement(12087..12809)
                     /gene="mngR"
                     /locus_tag="JN125_002325"
     CDS             complement(12087..12809)
                     /gene="mngR"
                     /locus_tag="JN125_002325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyl-D-glycerate transport/metabolism system
                     transcriptional repressor MngR"
                     /protein_id="HAY8872093.1"
                     /translation="MGHKPLYRQIADRIREQIARGELKPGDALPTESALQTEFGVSRV
                     TVRQALRQLVEQQILESIQGSGTYVKEERVNYDIFQLTSFDEKLSDRHVDTHSEVLIF
                     EVIPADDFLQQQLQITAQDRVWHVKRVRYRKQKPMALEETWMPLALFPDLTWQVMENS
                     KYHFIEEVKKMVIDRSEQEIIPLMPTEEMSRLLNISQTKPILEKISRGYLVDGRVFEY
                     SRNAFNTDDYKFTLIAQRKSSR"
     gene            12918..14894
                     /gene="mngA"
                     /locus_tag="JN125_002326"
     CDS             12918..14894
                     /gene="mngA"
                     /locus_tag="JN125_002326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS 2-O-a-mannosyl-D-glycerate transporter
                     subunit IIABC"
                     /protein_id="HAY8872094.1"
                     /translation="MVLFYRAHWRDYKNDQVRIMMNLTTLTHRDALRLNARFTSREEA
                     IHALTQRLAALGKISSTEQFLEEVYRRESLGPTALGEGLAVPHGKTAAVKEAAFAVAT
                     LSEPLQWEGVDGPEAVDLVVLLAIPPNEAGTMHMQLLTALTTRLADDEIRARIQSATT
                     PDELLSALDDKGGTQPSASFSNAPTIVCVTACPAGIAHTYMAAEYLEKAGRKLGVNVY
                     VEKQGANGIEGRLTADQLNSATACIFAAEVAIKESERFNGIPALSVPVAEPIRHAEAL
                     IQQALTLKRSDETRTVQQDTQPVKSVKTELKQALLSGISFAVPLIVAGGTVLAVAVLL
                     SQIFGLQDLFNEENSWLWMYRKLGGGLLGILMVPVLAAYTAYSLADKPALAPGFAAGL
                     AANMIGSGFLGAVVGGLIAGYLMRWVKNHLRLSSKFNGFLTFYLYPVLGTLGAGSLML
                     FVVGEPVAWINNSLTAWLNGLSGSNALLLGAIFGFMCSFDLGGPVNKAAYAFCLGAMA
                     NGVYGPYAIFASVKMVSAFTVTASTMLAPRLFKEFEIETGKSTWLLGLAGITEGAIPM
                     AIEDPLRVIGSFVLGSMVTGAIVGAMNIGLSTPGAGIFSLFLLHDNGAGGVMAAIGWF
                     GAALVGAAISTAILLIWRRHAVKHGNYLTDGVMP"
     gene            14912..>15150
                     /locus_tag="JN125_002327"
     CDS             14912..>15150
                     /locus_tag="JN125_002327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872095.1"
                     /translation="MKAVSRVHITPHMHWDREWYFTTEESRILLVNNMEEILCRLEQD
                     NEYKYYVLDGQTSILEDYFAVKPENKDRVKKQVEAG"
BASE COUNT         3607 a         3829 c         4145 g         3569 t
ORIGIN      
        1 aatatatgaa tgtccgatag tggattttat ttttacaatt ttttgtgttt aggcatataa
       61 aaattaaccc gccatttgaa cggcgggtta aaatatttac aacttagcaa tcaaccatta
      121 acgcttgata tcgcttttaa agtcgcgttt ttcatatcct gtatacagct gacgcggacg
      181 ggcaatcttc ataccgtcac tgtgcatttc gctccagtgg gcgatccagc caacggtacg
      241 tgccattgcg aaaatgacgg tgaacatgga agacggaata cccatcgctt tcaggatgat
      301 accagagtag aaatcgacgt tcgggtacag tttcttctcg ataaagtacg ggtcgttcag
      361 cgcgatgttt tccagctcca tagccacttc cagcaggtca tctttggtgc ccagctcttt
      421 cagaacttca tggcaggttt cacgcattac ggtggcgcgc gggtcgtaat ttttgtacac
      481 gcggtgaccg aagcccatca ggcggaaaga atcattttta tctttcgcac gacgaacaaa
      541 ttccggaatg tgtttaacgg agctaatttc ttccagcatt ttcagcgccg cttcgttagc
      601 accaccgtgc gcaggtcccc acagtgaagc aatacctgct gcgatacagg caaacgggtt
      661 cgcacccgaa gagccagcgg tacgcacggt ggaggtagag gcgttctgtt catggtcagc
      721 gtgcaggatc agaatacggt ccatagcacg ttccagaatc ggattaactt catacggttc
      781 gcacggcgtg gagaacatca tattcaggaa gttaccggca taggagagat cgttgcgcgg
      841 ataaacaaat ggctgaccaa tggaatactt gtaacacatc gcggccatgg tcggcatttt
      901 cgacagcagg cggaacgcgg caatttcacg atgacgagga ttgttaacat ccagcgagtc
      961 gtgatagaac gccgccagcg cgccggtaat accacacatg actgccattg gatgtgagtc
     1021 gcgacggaaa gcgtggaaca gacgggtaat ctgctcgtgg atcatggtat gacgggtcac
     1081 cgtagtttta aattcgtcat actgttcctg agtcggtttt tcaccattca gcaggatgta
     1141 acaaacttcc aggtagttag aatcggtcgc cagctgatcg atcgggaaac cgcggtgcag
     1201 caaaatacct tcatcaccat caataaaagt aattttagat tcgcaggatg cggttgaagt
     1261 gaagcctggg tcaaaggtga acacaccttt tgaaccgaga gtacggatat caataacatc
     1321 ttgacccagc gtgcctttca gcacatccag ttcaacagct gtgtccccgt tgagggtgag
     1381 ttttgctttt gtatcagcca tttaaggtct ccttagcgcc ttattgcgta agactgccgg
     1441 aacttaaatt tgccttcgca catcaacctg gctttacccg tttgttattt ggctcgccgc
     1501 tctgtgaaag aggggaaaac ctgggtacag agctctgggc gcttgcaggt aaaggatcca
     1561 ttgatgacga ataaatggcg aatcaagtac ttagcaatcc gaattattaa acttgtctac
     1621 cactaataac tgtcccgaat gaattggtca atacttccac actgttacat aagttaatct
     1681 taggtgaaat accgacttca taacttttac gcattatatg cttttcctgg taatgtttgt
     1741 aacaactttg ttgagcgatt gtcaaattag atgattaaaa attaaataaa tgttgttatc
     1801 gtgacctgga tcactgttca ggataaaacc cgacaaacta tatgtaggtt aattgtaatg
     1861 attttgtgaa cagcctatac tgccgccagg tctccggaac accctgcaat cccgagccac
     1921 ccagcgttgt aacgtgtcgt tttcgcatct ggaagcagtg ttttgcatga cgcgcagtta
     1981 tagaaaggac gctgtctgac ccgcaagcag accggaggaa ggaaatcccg acgtctccag
     2041 gtaacagaaa gttaacctct gtgcccgtag tccccaggga ataataagaa cagcatgtgg
     2101 gcgttattca tgataagaaa tgtgaaaaaa caaagacctg ttaatctgga cctacagacc
     2161 atccggttcc ccatcacggc gatagcgtcc attctccatc gcgtttccgg tgtgatcacc
     2221 tttgttgcag tgggcatcct gctgtggctt ctgggtacca gcctctcttc ccctgaaggt
     2281 ttcgagcaag cttccgcgat tatgggcagc ttcttcgtca aatttatcat gtggggcatc
     2341 cttaccgctc tggcgtatca cgtcgtcgta ggtattcgcc acatgatgat ggattttggc
     2401 tatctggaag aaacattcga agcgggtaaa cgctccgcca aaatctcctt tgttattact
     2461 gtcgtgcttt cacttctcgc aggagtcctc gtatggtaag caacgcctcc gcattaggac
     2521 gcaatggcgt acatgatttc atcctcgttc gcgctaccgc tatcgtcctg acgctctaca
     2581 tcatttatat ggtcggtttt ttcgccacca gtggcgaact gacatatgaa gtctggatcg
     2641 gtttcttcgc ctctgcgttc accaaagtgt tcaccctgct ggcgctgttt tctatcttga
     2701 ttcatgcctg gatcggcatg tggcaggtgt tgaccgacta cgctaaaccg ctggcattgc
     2761 gcctgatgct gcaactggtg attgtcgttg cactggtggt ttacgtgatt tatggattcg
     2821 ttgtggtgtg gggtgtgtga tgaaattgcc agtcagagaa tttgatgcag ttgtgattgg
     2881 tgccggtggc gcaggtatgc gcgcggcgct gcaaatttcc cagagcggcc agacctgtgc
     2941 gctgctctct aaagtcttcc cgacccgttc ccataccgtt tctgcgcaag gcggcattac
     3001 cgttgcgctg ggtaataccc atgaagataa ctgggaatgg catatgtacg acaccgtaaa
     3061 agggtcggac tatatcggtg accaggacgc gattgaatat atgtgtaaaa ccgggccgga
     3121 agcgattctg gaactcgaac acatgggcct gccgttctcg cgtcttgatg atggtcgtat
     3181 ctatcaacgt ccgtttggcg gtcagtcgaa aaacttcggc ggcgagcagg cggcacgcac
     3241 tgcggcggcg gctgaccgta ccggtcacgc actgttgcac acgctttatc agcagaacct
     3301 gaaaaaccac accaccattt tctccgagtg gtatgcgctg gatctggtga agaaccagga
     3361 tggcgcggtg gtgggttgta ctgcactgtg catcgaaact ggtgaagtgg tttatttcaa
     3421 agcccgcgct accgtgctgg cgactggcgg ggcagggcgt atttatcagt ccaccactaa
     3481 cgcccacatt aacactggcg acggcgtcgg catggctatc cgcgcaggcg taccggtgca
     3541 ggatatggaa atgtggcagt tccacccgac cggtattgcc ggtgcgggcg tactggtcac
     3601 cgaaggttgc cgtggtgaag gcggttatct gctgaacaaa catggcgaac gctttatgga
     3661 gcgttatgcg ccgaacgcca aagacctggc gggccgtgat gtggtggcgc gttccatcat
     3721 gatcgaaatc cgtgaaggtc gcggctgtga tggtccgtgg gggccacacg cgaaactgaa
     3781 actcgaccac ctgggtaaag aagttctcga atcccgtctg ccgggcatcc tggaactctc
     3841 ccgtaccttc gctcacgtcg atccggtgaa agagccgatc ccggttatcc caacctgtca
     3901 ttacatgatg ggcggtattc cgaccaaagt gaccggtcag gcgctgactg tgaatgagaa
     3961 aggcgaagat gtggttgttc cgggactgtt tgccgttggt gaaatcgctt gtgtatcggt
     4021 acacggcgct aaccgtctgg gcggcaactc gctgctggac ctggtggtct ttggtcgtgc
     4081 ggcaggtctg catctgcaag agtctatcgc cgagcagggc gcattgcgcg atgccagcga
     4141 gtctgatgtt gaagcatctc tggatcgtct gaaccgctgg aacaataatc gtaatggtga
     4201 agatccggtg gcgattcgta aagcgctgca agaatgtatg cagcataact tctcggtctt
     4261 ccgtgaaggt gatgcgatgg cgaaagggct tgagcagttg aaagttatcc gcgagcgtct
     4321 gaaaaatgcc cgtctggatg acacttccag cgagttcaac acccagcgcg ttgagtgcct
     4381 ggaactggat aacctgatgg aaacggcgta tgcaacggct gtttctgcca acttccgtac
     4441 cgaaagccgt ggcgcgcata gccgcttcga cttcccggat cgtgatgatg aaaactggct
     4501 gtgccactcc ctgtatctgc cagagtcgga atccatgacg cgccgaagcg tcaacatgga
     4561 accgaaactg cgcccggcat tcccgccgaa gattcgtact tactaatgcg gagacaggaa
     4621 aatgagactc gagttttcaa tttatcgcta taacccggat gttgatgatg ctccgcgtat
     4681 gcaggattac accctggaag cggaagaagg tcgcgacatg atgctgctgg atgcgcttat
     4741 ccagctgaaa gagaaagatc ccagcctgtc gttccgccgc tcctgtcgtg aaggtgtgtg
     4801 cggttccgac ggtctgaaca tgaacggcaa gaatggtctg gcctgtatta ccccgatttc
     4861 ggcactcaac cagccgggca agaagattgt gattcgcccg ctgccaggtt taccggtgat
     4921 ccgcgatttg gtggtagaca tgggacaatt ctatgcgcaa tatgagaaaa ttaagcctta
     4981 cctgttgaat aatggacaaa atccgccagc tcgcgagcat ttacagatgc cagagcagcg
     5041 cgaaaaactc gacgggctgt atgaatgtat tctctgcgca tgttgttcaa cctcttgtcc
     5101 gtctttctgg tggaatcccg ataagtttat cggcccggca ggcttgttag cggcatatcg
     5161 tttcctgatc gatagccgtg ataccgagac tgacagccgc ctcgacggtt tgagcgatgc
     5221 attcagcgta ttccgctgtc acagcatcat gaactgcgtc agtgtatgtc cgaaggggct
     5281 gaacccgacg cgcgccatcg gccatatcaa gtcgatgttg ttgcaacgta atgcgtaaac
     5341 cgtaggcctg ataagacgcg caagcgtcgc atcaggcaac cagtgccgga tgcggcgtga
     5401 acgccttatc cggcctacaa gtcattaccc gtaggcctga taagcgcagc gcatcaggcg
     5461 taacaaagaa atgcaggaaa tctttaaaaa ctgcccctga cactaagaca gtttttaaag
     5521 gttccttcgc gagccactac gtagacaaga gctcgcaagt gaaccccggc acgcacatca
     5581 ctgtgcgtgg tagtatccac ggcgaagtaa gcataaaaaa gatgcttaag ggatcacgat
     5641 gcagaacagc gctttgaaag cctggttgga ctcttcttac ctctctggcg caaaccagag
     5701 ctggatagaa cagctctatg aagacttctt aaccgatcct gactcggttg acgctaactg
     5761 gcgttcgacg ttccagcagt tacctggtac gggagtcaaa ccggatcaat tccactctca
     5821 aacgcgtgaa tatttccgcc gcctggcgaa agacgcttca cgttactctt caacgatctc
     5881 cgaccctgac accaatgtga agcaggttaa agtcctgcag ctcattaacg cataccgctt
     5941 ccgtggtcac cagcatgcga atctcgatcc gctgggactg tggcagcaag ataaagtggc
     6001 cgatctggat ccgtctttcc acgatctgac cgaagcagac ttccaggaaa ccttcaacgt
     6061 cggttcattt gccagcggca aagaaaccat gaaactcggc gagctgctgg aagccctcaa
     6121 gcaaacctac tgcggcccga ttggtgccga gtatatgcac atcaccagca ccgaagaaaa
     6181 acgctggatc caacagcgta tcgagtctgg tcgcgcgact ttcaatagcg aagagaaaaa
     6241 acgcttctta agcgaactga ccgccgctga aggccttgaa cgttacctcg gcgcaaaatt
     6301 ccctggcgca aaacgcttct cgctggaagg cggtgacgcg ttaatcccga tgcttaaaga
     6361 gatgatccgc cacgctggca acagcggcac ccgcgaagtg gttctcggga tggcgcaccg
     6421 tggtcgtctg aacgtgctgg tgaacgtgct gggtaaaaaa ccgcaagact tgttcgacga
     6481 gttcgccggt aaacataaag aacacctcgg cacgggtgac gtgaaatacc acatgggctt
     6541 ctcgtctgac ttccagaccg atggcggcct ggtgcacctg gcgctggcgt ttaacccgtc
     6601 tcaccttgag attgtaagcc cggtagttat cggttctgtt cgtgcccgtc tggacagact
     6661 tgatgagccg agcagcaaca aagtgctgcc aatcaccatc cacggtgacg ccgcagtgac
     6721 cgggcagggc gtggttcagg aaaccctgaa catgtcgaaa gcgcgtggtt atgaagttgg
     6781 cggtacggta cgtatcgtta tcaacaacca ggttggtttc accacctcta atccgctgga
     6841 tgcccgttct acgccgtact gtactgatat cggtaagatg gttcaggccc cgattttcca
     6901 cgttaacgcg gacgatccgg aagccgttgc ctttgtgacc cgtctggcgc tcgatttccg
     6961 taacaccttt aaacgtgatg tcttcatcga cctggtgtgc taccgccgtc acggccacaa
     7021 cgaagccgac gagccgagcg caacccagcc gctgatgtat cagaaaatca aaaaacatcc
     7081 gacaccgcgc aaaatctacg ctgacaagct ggagcaggaa aaagtggcga cgctggaaga
     7141 tgccaccgag atggttaacc tgtaccgcga tgcgctggat gctggcgatt gcgtagtggc
     7201 agagtggcgt ccgatgaaca tgcactcttt cacctggtcg ccgtacctca accacgaatg
     7261 ggacgaagag tacccgaaca aagttgagat gaagcgcctg caggagctgg cgaaacgcat
     7321 cagcacggtg ccggaagcag ttgaaatgca gtctcgcgtt gccaagattt atggcgatcg
     7381 ccaggcgatg gctgccggtg agaaactgtt cgactggggc ggtgcggaaa acctcgctta
     7441 cgccacgctg gttgacgaag gcattccggt tcgcctgtcg ggtgaagact ccggtcgcgg
     7501 taccttcttc caccgccacg cggtgatcca caaccagtct aacggttcca cttacacgcc
     7561 gctgcaacac atccataacg ggcagggcgc gttccgcgtc tgggactccg tactgtctga
     7621 agaagcagtg ctggcgtttg aatacggtta tgccaccgca gaaccacgca ctctgaccat
     7681 ctgggaagcg cagttcggtg acttcgctaa cggtgctcag gtggttatcg accagttcat
     7741 ctcctctggc gaacagaaat ggggccggat gtgtggtctg gtgatgttgc tgccgcacgg
     7801 ttatgaaggg caggggccgg agcactcctc cgcgcgtctg gaacgttatc tgcaactttg
     7861 tgctgagcaa aacatgcagg tgtgcgtacc gtctaccccg gcacaggttt accacatgct
     7921 gcgtcgtcag gcgctgcgcg ggatgcgtcg tccgctggtc gtgatgtcgc cgaaatccct
     7981 gctgcgtcat ccgctggcgg tttccagcct cgaagaactg gcgaacggca ccttcctgcc
     8041 agccatcggt gaaatcgacg agcttgatcc gaagggcgtg aagcgcgtag tgatgtgttc
     8101 tggtaaggtt tattacgacc tgctggaaca gcgtcgtaag aacaatcaac acgatgtcgc
     8161 cattgtgcgt atcgagcaac tctacccgtt cccgcataaa gcgatgcagg aagtgttgca
     8221 gcagtttgct cacgtcaagg attttgtctg gtgccaggaa gagccgctca accagggcgc
     8281 atggtactgc agccagcatc atttccgtga agtgattccg tttggggctt ctctgcgtta
     8341 tgcaggccgc ccggcctccg cctctccggc ggtagggtat atgtccgttc accagaaaca
     8401 gcaacaagat ctggttaatg acgcgctgaa cgtcgaataa ataaaggata cacaatgagt
     8461 agcgtagata ttctggtccc tgacctgcct gaatccgtag ccgatgccac cgtcgcaacc
     8521 tggcataaaa aacccggcga cgcagtcgta cgtgatgaag tgctggtaga aatcgaaact
     8581 gacaaagtgg tactggaagt accggcatca gcagacggca ttctggatgc ggttctggaa
     8641 gatgaaggta caaccgtaac gtctcgtcag atccttggtc gcctgcgtga aggcaacagc
     8701 gccggtaaag aaaccagcgc caaatctgaa gagaaagcgt ccactccggc gcaacgccag
     8761 caggcgtctc tggaagagca aaacaacgat gcgttaagcc cggcgatccg tcgcttgctg
     8821 gctgaacata acctcgacgc cagcgctatt aaaggcaccg gcgtgggtgg tcgtctgacc
     8881 cgtgaagatg tggaaaaaca tctggcgaaa tccccggcga aagagtctgc accggcagcg
     8941 gctgctccgg cggcgcaacc ggctctggct gcacgtagtg aaaaacgtgt cccgatgact
     9001 cgcctgcgta agcgtgtggc agagcgtctg ctggaagcga aaaactccac cgccatgctg
     9061 accacgttca acgaagtcaa catgaagccg attatggatc tgcgtaagca gtacggtgaa
     9121 gcgtttgaaa aacgccacgg catccgtctg ggctttatgt ccttctacgt gaaagcggtg
     9181 gttgaagccc tgaaacgtta cccggaagtg aatgcttcta tcgacggcga tgacgtggtt
     9241 taccacaact atttcgacgt cagcatggcg gtttctacgc cgcgcggcct ggtgacgccg
     9301 gttctgcgtg atgtcgatac cctcggcatg gcagacatcg agaagaaaat caaagagctg
     9361 gcagtcaaag gccgtgatgg caagctgacc gttgaagatc tgaccggtgg taacttcacc
     9421 atcaccaacg gtggtgtgtt cggttccctg atgtctacgc cgatcatcaa cccgccgcag
     9481 agcgcaattc tgggtatgca cgctatcaaa gatcgtccga tggcggtgaa tggtcaggtt
     9541 gagatcctgc cgatgatgta cctggcgctg tcctacgatc accgtctgat cgatggtcgc
     9601 gaatccgtgg gcttcctggt aacgatcaaa gagttgctgg aagatccgac gcgtctgctg
     9661 ctggacgtgt agtagtttaa gtttcacctg cactgtagac aggataaggc attatcgcct
     9721 tctccggcaa ttgaagcctg atgcgacgct taacgcgtct tatcaggcct acgggaagca
     9781 ccaatgtagg tcggataagg cgcttgcgcc gcatccgaca agcgatgcct gatgcgacac
     9841 ttacgcgtct tatcgggcct acaggtgacc gacaatgccc ggaagcgata cgaaatattc
     9901 ggtctacggt ttaaaagata acgattactg aaggatggac agaacacatg aacttacatg
     9961 aatatcaggc aaaacaactt tttgcccgct atggcttacc agcaccggtg ggttatgcct
    10021 gtactactcc gcgcgaagca gaagaagccg cttcaaaaat cggtgccggt ccgtgggtag
    10081 tgaaatgtca ggttcacgct ggtggccgcg gtaaagcggg cggtgtgaaa gttgtaaaca
    10141 gcaaagaaga catccgtgct tttgcagaaa attggctcgg caagcgtctg gtaacgtatc
    10201 aaacagatgc caatggccaa ccggttaacc agattctggt tgaagcagcg accgatattg
    10261 ctaaagagct gtatctcggt gccgttgtag accgtagttc ccgtcgtgtg gtctttatgg
    10321 cctccactga aggcggcgtg gaaatcgaaa aagtggcgga agaaactccg cagctgatcc
    10381 ataaagttgc gcttgatccg ctgacaggcc cgatgccgta tcagggacgc gagctggcgt
    10441 tcaaactggg tctggaaggt aaactggttc agcagttcac caaaatcttc atgggtctgg
    10501 cgaccatttt cctagagcgc gacctggcgt tgatcgaaat caacccgctg gtcatcacca
    10561 aacagggtga tctgatttgc ctcgacggca aactgggcgc tgatggcaac gcactgttcc
    10621 gccagcttga tctgcgcgaa atgcgtgacc agtcgcagga agatccgcgt gaagcacagg
    10681 ctgcacagtg ggaactgaac tacgttgcgc tggacggtaa catcggttgt atggttaacg
    10741 gcgcaggtct ggcgatgggt acgatggaca tcgttaaact gcacggcggc gaaccggcta
    10801 acttccttga cgttggcggc ggcgcaacca aagaacgtgt aaccgaagcg ttcaaaatca
    10861 tcctctctga cgacaaagtg aaagtcgttc tggttaacat cttcggcggt atcgttcgtt
    10921 gcgacctgat cgctgacggt atcatcggcg cggtagcaga agtgggtgtt aacgtaccgg
    10981 tcgtggtacg tctggaaggt aacaacgccg aactcggcgc gaagaaactg gctgacagcg
    11041 gcctgaatat tattgcagca aaaggtctga cggatgcagc tcagcaggtt gttgccgcag
    11101 tggaggggaa ataatgtcca ttttaattga taaaaacacc aaggttatct gccagggctt
    11161 tactggtagc caggggactt tccactcaga acaggccatt gcatacggca ctaaaatggt
    11221 tggcggcgta accccaggta aaggcggtac tacccacctc ggcctgccgg tgttcaacac
    11281 cgtgcgtgaa gctgttgctg ctactggcgc taccgcttct gttatctacg taccagcacc
    11341 gttctgcaaa gactccattc tggaagctat tgatgcaggc atcaaactga ttatcaccat
    11401 cactgaaggc atcccgacgc tggatatgct gactgtgaaa gtgaaactgg acgaagccgg
    11461 cgttcgtatg atcggcccga actgcccggg cgttatcact ccgggtgaat gcaaaatcgg
    11521 tatccagccg ggtcacattc acaaaccggg taaagtgggt atcgtttccc gttccggtac
    11581 actgacctat gaagcggtta aacagaccac ggattacggt ttcggtcagt cgacctgtgt
    11641 tggtatcggc ggtgacccga tcccaggctc taactttatc gacatcctcg aaatgttcga
    11701 aaaagatccg cagaccgaag cgatcgtgat gatcggtgag atcggcggta gcgctgaaga
    11761 agaagcggca gcgtacatca aagagcacgt taccaagcca gttgtaggtt acatcgctgg
    11821 tgtgactgcg ccgaaaggca aacgtatggg ccacgcgggt gcgatcattg ccggtgggaa
    11881 agggactgcg gatgagaaat tcgctgctct ggaagccgca ggcgtgaaaa ccgttcgcag
    11941 cctggcggat atcggtgaag cactgaaaac tgttctgaaa taaatatctg taataagaaa
    12001 tagccctcgc cgcttccctc tacaggaatg gcgaagggct gtcggtttcg acatggttgg
    12061 ccatcgtatg atggcctttt ttgtgcttat cgcgatgatt ttcgctgcgc tatcagggta
    12121 aatttatagt catcggtatt aaaagcgttg cggctatatt caaacacccg accatcaact
    12181 aaatatccac gcgatatttt ttcaagaatc ggctttgtct ggctgatatt aagcagacgg
    12241 ctcatctctt cggttggcat cagaggaatg atttcctgtt cgctacgatc gataaccatc
    12301 ttcttcactt cttcaataaa gtgatatttc gaattttcca tgacctgcca ggtgagatcc
    12361 gggaacaacg caagcggcat ccaggtttct tccagcgcca ttggcttttg cttgcgatag
    12421 cgcacgcgct tcacatgcca cacacgatcc tgcgcggtga tttgtagctg ttgctgaaga
    12481 aaatcgtcag ccggaatcac ttcaaatatc aggacttcac tgtgtgtatc gacgtgacgg
    12541 tccgacagtt tttcatcaaa actggttaac tgaaaaatat cgtaattgac ccgctcttct
    12601 ttgacgtaag tcccgctgcc ctgaatgctt tcgaggatct gctgctcgac tagctggcgc
    12661 aaagcctgac gcaccgtaac ccggctgacg ccaaactctg tttgtagcgc tgattcagtg
    12721 ggtaacgcat cgccaggttt aagctcgcca cgcgcaattt gttcacgaat gcgatcggca
    12781 atctgccggt ataagggctt gtgtcccatt tttagtatct cattaatacg aatttagcca
    12841 ttatgcccga taaattcatt ctgtaaataa tgcaaataca atacaaataa tttcaatcaa
    12901 gtgaaattga tcatgtaatg gtattgtttt atcgggcaca ctggcgcgac tataaaaacg
    12961 atcaagtgag gatcatgatg aatctgacga ctctgaccca ccgcgatgcg ttgcgtctga
    13021 atgcgcgctt taccagccgt gaagaggcca tccacgcgtt gactcaacgt cttgctgctc
    13081 tggggaaaat ttccagtact gagcaatttc tggaagaagt gtatcgccgt gaaagccttg
    13141 gcccgaccgc cttaggtgaa gggttggctg tgccgcatgg caaaactgct gcggtaaaag
    13201 aagcggcgtt tgcggtcgcc acactcagcg agccgcttca gtgggaaggc gttgatggcc
    13261 cggaagcagt tgatttagtg gtgctgctgg cgattccccc caatgaagcg ggtactatgc
    13321 atatgcaact gctgacagcg ctgaccacgc gccttgcgga tgatgagatt cgggcgcgta
    13381 tacagtcggc gacgacgcct gatgagttgc tctcggcgct ggatgacaag ggaggcacgc
    13441 aaccttctgc ctctttttcc aacgcgccaa ctatcgtctg cgtaacggcc tgtccggcgg
    13501 gtattgctca cacctatatg gctgcggaat atctggaaaa agccggacgc aaactcggcg
    13561 taaatgttta cgttgaaaaa caaggcgcta acggcattga agggcgttta acggcggatc
    13621 aactcaatag tgcaaccgcc tgtatttttg cggctgaagt cgccatcaag gagagtgagc
    13681 gttttaatgg cattcccgcg ctttcagtgc ctgttgccga gccgattcgc catgcagaag
    13741 cgttgatcca acaagcgctt accctcaagc gtagcgatga gacgcgtacc gtacagcaag
    13801 atacgcaacc ggtgaaaagt gtcaaaacgg agctgaaaca ggcactgttg agcggaatct
    13861 cttttgccgt accgttgatt gtcgcggggg gcacggtgct ggcggtcgcg gtattactgt
    13921 cgcaaatctt cgggctacaa gatctgttta atgaagaaaa ctcctggctg tggatgtacc
    13981 gcaagctggg cggcgggctg ctcggaattt tgatggtacc ggtgctcgcg gcctataccg
    14041 cctattctct ggcagataaa ccggcgttag cgccaggctt tgcggctgga cttgccgcca
    14101 acatgatcgg ctccgggttt ctcggcgcgg ttgttggcgg attgatagcc ggttacttga
    14161 tgcgctgggt gaaaaatcac ttgcgtctta gcagtaaatt caatggattc ctgacttttt
    14221 atctctaccc ggtgctcggt acgttgggag cgggcagtct gatgctgttt gtggtgggag
    14281 aacctgtcgc atggatcaat aactcgctta ccgcctggct gaacggtctg tcaggaagta
    14341 acgcgctgtt gctgggtgcc attttcggtt ttatgtgttc ctttgacctt ggagggccag
    14401 tgaacaaagc cgcttatgca ttctgcctgg gcgcaatggc gaacggcgtt tacggcccgt
    14461 atgccatttt cgcctccgtc aaaatggttt cggcatttac cgtaaccgct tccacgatgc
    14521 tcgcaccgcg cctgtttaaa gagtttgaaa ttgagaccgg gaaatccacc tggctgttag
    14581 ggctggcagg tattaccgaa ggggcgatcc cgatggcgat tgaagatccg ctgcgggtta
    14641 ttggttcgtt tgtgctgggc tctatggtaa cgggcgctat tgtcggtgcg atgaatatcg
    14701 gcctttcgac acccggtgcc ggcattttct cgctcttttt acttcatgat aatggcgcgg
    14761 gcggtgttat ggcggcaatt ggctggtttg gtgcggcatt ggtgggggct gcaatctcga
    14821 ctgcaattct cctgatctgg cggcgtcacg cggttaagca tggcaactat ctgactgatg
    14881 gcgtaatgcc ataaacaaaa aggaaacgac gatgaaagcg gtatctcgcg ttcacatcac
    14941 cccgcatatg cactgggatc gagagtggta tttcaccacc gaagagtcac gtattctgct
    15001 ggtcaataat atggaagaga tcctgtgccg actggaacag gacaacgaat acaaatatta
    15061 cgtactcgac gggcaaacgt cgatcctcga agattatttc gcggtgaaac cggaaaacaa
    15121 agaccgtgtg aagaaacagg tagaagccgg
//
LOCUS       DADMHM010000087        15150 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.088, whole genome shotgun sequence.
ACCESSION   DADMHM010000087 DADMHM010000000
VERSION     DADMHM010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 15150)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15150)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15150
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.088"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(1..467)
                     /locus_tag="JN125_002328"
                     /pseudo
     CDS             complement(1..467)
                     /locus_tag="JN125_002328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308756.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(627..839)
                     /gene="rpmE"
                     /locus_tag="JN125_002329"
     CDS             complement(627..839)
                     /gene="rpmE"
                     /locus_tag="JN125_002329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HAY8872096.1"
                     /translation="MKKDIHPKYEEITASCSCGNVMKIRSTVGHDLNLDVCSKCHPFF
                     TGKQRDVATGGRVDRFNKRFNIPGSK"
     gene            1042..3240
                     /gene="priA"
                     /locus_tag="JN125_002330"
     CDS             1042..3240
                     /gene="priA"
                     /locus_tag="JN125_002330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HAY8872097.1"
                     /translation="MPVAHVALPVPLPRTFDYLLPEGMTVKAGCRVRVPFGKQQERIG
                     VVVSVSDVSELPLNELKAVVEVLDVEPVFTHSVWRLLLWAADYYHHPIGDVLFHALPI
                     LLRQGRPAANAPMWYWFATEQGQAVDLNSLKRSPKQQQALAALRQGKIWRDQVATLEF
                     NDAALQALRKKGLCDLASETPEFSDWRTNYAVSGERLRLNTEQATAVGAIHSAADTFS
                     AWLLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQTIARFRERFNAPVEVL
                     HSGLNDSERLSAWLKAKNGEAAIVIGTRSALFTPFKNLGVIVIDEEHDSSYKQQEGWR
                     YHARDLAVYRAHSEQIPIILGSATPALETLCNVQQKKYRLLRLTRRAGNARPAIQHVL
                     DLKGQKVQAGLAPALITRMRQHLQANNQVILFLNRRGFAPALLCHDCGWIAECPRCDH
                     YYTLHQAQQHLHCHHCDSQRPVPRQCPSCGSTHLVPVGLGTEQLEQTLAPMFPGVPIS
                     RIDRDTTSRKGALEQQLAKVHRGGARILIGTQMLAKGHHFPDVTLVALLDVDGALFSA
                     DFRSAERFAQLYTQVAGRAGRAGKQGEVVLQTYHPEHPLLQTLLYKGYDAFAEQALAE
                     RRMMQLPPWTSHVIVRAEDHNNQHAPLFLQQLRNLILSSPLADDKLWILGPVPALAPK
                     RGGRWRWQILLQHPSRVRLQHIISGTLALINTIPDSRKVKWVLDVDPIEG"
     gene            3396..4421
                     /gene="cytR"
                     /locus_tag="JN125_002331"
     CDS             3396..4421
                     /gene="cytR"
                     /locus_tag="JN125_002331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator CytR"
                     /protein_id="HAY8872098.1"
                     /translation="MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRV
                     EKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDPFFSEIIRGIEVTAANHGYLVLI
                     GDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
                     LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVD
                     PQYIARGDFTFEAGSKAMQQLLDLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLS
                     IIGFDNIDLTQCCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHVGSGSRLMDCELIIR
                     GSTRALP"
     gene            4513..5472
                     /gene="ftsN"
                     /locus_tag="JN125_002332"
     CDS             4513..5472
                     /gene="ftsN"
                     /locus_tag="JN125_002332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsN"
                     /protein_id="HAY8872099.1"
                     /translation="MAQRDYVRRSQPAPSRRKKSTSRKKQRNLPAVSPAMVAIAAAVL
                     VTFIGGLYFITHHKKEESETLQSQKVTGNGLPPKPEERWRYIKELESRQPGVRAPTEP
                     SAGGEVKTPEQLTPEQRQLLEQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQ
                     QLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDLLQTPAHTT
                     AQSKPQQAAPVARAADAPKPTAEKKDERRWMVQCGSFRGAEQAETVRAQLAFEGFDSK
                     ITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIRLAAGG"
     gene            5565..6095
                     /gene="hslV"
                     /locus_tag="JN125_002333"
     CDS             5565..6095
                     /gene="hslV"
                     /locus_tag="JN125_002333"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008457544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HAY8872100.1"
                     /translation="MTTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVI
                     AGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADET
                     ASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDIC
                     IYTNHFHTIEELSYKA"
     gene            6105..7436
                     /gene="hslU"
                     /locus_tag="JN125_002334"
     CDS             6105..7436
                     /gene="hslU"
                     /locus_tag="JN125_002334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019841241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HslU--HslV peptidase ATPase subunit"
                     /protein_id="HAY8872101.1"
                     /translation="MSEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEEL
                     RHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD
                     LTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFR
                     KKLREGQLDDKEIEIDLAAAPMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKI
                     KDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREG
                     VQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQA
                     LTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGA
                     RRLHTVLERLMEEISYDASDLSGQNITIDADYVSKRLDALVADEDLSRFIL"
     gene            7503..8429
                     /gene="menA"
                     /locus_tag="JN125_002335"
     CDS             7503..8429
                     /gene="menA"
                     /locus_tag="JN125_002335"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HAY8872102.1"
                     /translation="MTEQQISRTQAWLESLRPKTLPLAFAAIIVGTALAWWQGHFDPL
                     VALLALITAGLLQILSNLANDYGDAVKGSDKPDRIGPLRGMQKGVITQQEMKRALIIT
                     VVLICLSGLALVAVACHTLADFVGFLILGGLSIIAAITYTVGNRPYGYIGLGDISVLV
                     FFGWLSVMGSWYLQAHTLIPALILPATACGLLATAVLNINNLRDINSDRENGKNTLVV
                     RLGEVNARRYHACLLMGSLVCLALFNLFSLHSLWGWLFLLAAPLLVKQARYVMREMDP
                     VAMRPMLERTVKGALLTNLLFILGIFLSQWAA"
     gene            8522..9007
                     /gene="rraA"
                     /locus_tag="JN125_002336"
     CDS             8522..9007
                     /gene="rraA"
                     /locus_tag="JN125_002336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001392924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E activity regulator RraA"
                     /protein_id="HAY8872103.1"
                     /translation="MKYDTSELCDIYQEDVNVVEPLFSNFGGRASFGGQIITVKCFED
                     NGLLYDLLEQNGRGRVLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDL
                     EELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDI
                     E"
     gene            complement(9092..9337)
                     /gene="zapB"
                     /locus_tag="JN125_002337"
     CDS             complement(9092..9337)
                     /gene="zapB"
                     /locus_tag="JN125_002337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring assembly protein ZapB"
                     /protein_id="HAY8872104.1"
                     /translation="MTMSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ
                     NAQHQREELERENNHLKEQQNGWQERLQALLGRMEEV"
     gene            9763..10608
                     /gene="glpF"
                     /locus_tag="JN125_002338"
     CDS             9763..10608
                     /gene="glpF"
                     /locus_tag="JN125_002338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol uptake facilitator protein GlpF"
                     /protein_id="HAY8872105.1"
                     /translation="MSQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGLWEI
                     SVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVIPFIVSQVAGAFCAAA
                     LVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILM
                     GLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKVFAWLAG
                     WGNVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRHLPCDICVVEEKETTTPSE
                     QKASL"
     gene            10631..12139
                     /gene="glpK"
                     /locus_tag="JN125_002339"
     CDS             10631..12139
                     /gene="glpK"
                     /locus_tag="JN125_002339"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HAY8872106.1"
                     /translation="MTEKKYIVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPKPG
                     WVEHDPMEIWATQSSTLVEVLAKADISSDQIAAIGITNQRETTIVWEKETGKPIYNAI
                     VWQCRRTAEICEHLKRDGLEDYIRSNTGLVIDPYFSGTKVKWILDHVEGSRERARRGE
                     LLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLGWDDKMLEVLDIPREMLPEV
                     RRSSEVYGQTNIGGKGGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNT
                     GEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLINDAYDSEYFA
                     TKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLESIAYQTRDV
                     LEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGL
                     AVGFWQNLDELQEKAVIEREFRPGIETTERNYRYAGWKKAVKRAMAWEKHDE"
     gene            12274..13284
                     /gene="glpX"
                     /locus_tag="JN125_002340"
     CDS             12274..13284
                     /gene="glpX"
                     /locus_tag="JN125_002340"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
                     /protein_id="HAY8872107.1"
                     /translation="MRRELAIEFSRVTESAALAGYKWLGRGDKNTADGAAVNAMRIML
                     NQVNIDGTIVIGEGEIDEAPMLYIGEKVGTGRGDAVDIAVDPIEGTRMTAMGQANALA
                     VLAVGDKGCFLNAPDMYMEKLIVGPGAKGTIDLNLPLADNLRNVAAALGKPLSELTVT
                     ILAKPRHDAVIAEMQQLGVRVFAIPDGDVAASILTCMPDSEVDVLYGIGGAPEGVVSA
                     AVIRALDGDMNGRLLARHDVKGDNEENRRIGEQELARCKAMGIEAGKVLRLGDMARSD
                     NVIFSATGITKGDLLEGISRKGNIATTETLLIRGKSRTIRRIQSIHYLDRKDPEMQVH
                     IL"
     gene            13381..14127
                     /gene="fpr"
                     /locus_tag="JN125_002341"
     CDS             13381..14127
                     /gene="fpr"
                     /locus_tag="JN125_002341"
                     /EC_number="1.18.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001742479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin--NADP(+) reductase"
                     /protein_id="HAY8872108.1"
                     /translation="MADWVTGKVTKVQNWTDALFSLTVHAPVLPFTAGQFTKLGLEID
                     GERVQRAYSYVNSPDNPDLEFYLVTVPDGKLSPRLAALKPGDEVQVVSEAAGFFVLDE
                     VPDCETLWMLATGTAIGPYLSILQLGKDLDRFKNLVLVHAARYAADLSYLPLMQELEK
                     RYEGKLRIQTVVSRETAAGSLTGRIPALIESGELESAIGLPMNKETSHVMLCGNPQMV
                     RDTQQLLKETRQMTKHLRRRPGHMTAEHYW"
     gene            complement(14132..14560)
                     /gene="uspD"
                     /locus_tag="JN125_002342"
     CDS             complement(14132..14560)
                     /gene="uspD"
                     /locus_tag="JN125_002342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspD"
                     /protein_id="HAY8872109.1"
                     /translation="MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLS
                     ELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQWPKTKLRIERGEMPETLLEIMQKE
                     QCDLLVCGHHHSFINRLMPAYRGMINKMSADLLIVPFIDK"
     gene            complement(14587..14886)
                     /locus_tag="JN125_002343"
     CDS             complement(14587..14886)
                     /locus_tag="JN125_002343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF406 domain-containing protein"
                     /protein_id="HAY8872110.1"
                     /translation="MKDVVDKCSTKGCAIDIGTVIDNDNCTSKFSRFFATREEAESFM
                     TKLKELAAAASSADEGASVAYKIKDLEGQVELDAAFTFSCQAEMIIFELSLRSLA"
BASE COUNT         3643 a         3902 c         4078 g         3527 t
ORIGIN      
        1 ggccagccgg tgaccttcat ccagtttcgc cacgccgccg cgcaccagcc cagtgactcg
       61 ctgcggctgt aaccgtcctc accgggaaac aggtgctcaa aatacaggct tctgccgccg
      121 ttatcactga gtatcagtgt gttatcgcgc agctgtaagc ggatatccgc aggcattttc
      181 cagccggggc cgaggctccc caccggcgcg ggcgtttttg tccggtaact gctgtaggtg
      241 cgggagagga tgaacggcag cggggcgggc agggcaaggt ctgtctcgcc gggaaggacc
      301 tttgcaccga gcagcggatt gaccggatgg ccggacgtca ccccgccggg gcacactgaa
      361 caggccacgc cggtgggggc accaatgcgc accccggctg aaccctgaac aatgctaccg
      421 ccatactgcg tcatgtcgcc ctgacgcgcc gccggttttt cgctcatcgt aaaatccttt
      481 tgaaataaat aagaaccaga agcctagcgc cagtcaacaa caggaaatga taatgagtta
      541 acaccccgga atttttcaga atttataaaa ggcaaaattc aggcacaaaa aaagcgccgt
      601 gcggcgcttt tttcggaaat ccggtcttat ttgctgcccg ggatgttgaa acgcttgttg
      661 aagcggtcaa cacggccacc ggtagcaaca tcacgctgtt tgccagtgaa gaacgggtgg
      721 cacttgctgc acacgtcgag gttcaggtca tgaccaacag tggagcggat tttcattacg
      781 ttaccgcaag agcagctagc agtaatttct tcgtatttcg ggtgaatatc ttttttcatg
      841 ggaaaacctc ggtttaaggc cgcgtcgctc ttccagccct aacgccagac accacgcgat
      901 gttaaaagta tagcttcaat acgatcattt cgtacgaagg cgcgaaatca tacagaaatt
      961 aaccagcgta tgcaaactga tccgcactct tctacggcaa tgtgtatact aacccaccga
     1021 atttcaagtc aggatgatgc tatgcccgtt gcccacgttg ccttgcccgt tccgcttcct
     1081 cgtacctttg actatctgct gccagaaggc atgacggtta aagccgggtg tcgcgtgcgc
     1141 gtgccgtttg gcaaacaaca ggagcgcatc ggggttgtgg tgtcagttag cgatgtcagt
     1201 gagctgccgc ttaacgagct gaaagcggta gtggaagtgc tggacgttga gccggtattt
     1261 actcactccg tctggcggtt actgctctgg gcggcagatt actatcatca tccgattggc
     1321 gatgtgctgt ttcatgcctt gccgatttta ctgcgccagg ggcggcctgc ggcgaacgcg
     1381 ccgatgtggt actggtttgc cactgaacaa ggccaggcgg tggatctgaa cagcctgaaa
     1441 cgctccccca agcaacaaca ggcgctggcg gcgttacggc aaggcaaaat ctggcgcgac
     1501 caggtcgcca cgctcgaatt taatgatgcc gcgttgcagg cgctacgcaa aaaaggtctg
     1561 tgtgatttag caagtgaaac accagagttt agcgactggc gaacgaacta tgccgtttct
     1621 ggtgagcggt tgcgattgaa taccgaacag gccaccgccg ttggcgcaat tcatagcgcg
     1681 gcagatactt tttctgcctg gctgctggcg ggcgttaccg gttccggtaa aacggaggtt
     1741 tatctcagtg tactggaaaa cgtgctcgct cagggcaaac aggcgctggt gatggtgccg
     1801 gaaatcggcc tgacaccgca aactatcgcc cgttttcgtg aacgttttaa tgcccccgtg
     1861 gaagttctgc attccggcct gaacgacagc gagcggcttt cggcgtggtt gaaagcgaaa
     1921 aatggcgagg cggcgattgt gatcggcacc cgctccgcgc tgtttacgcc gtttaaaaat
     1981 ctcggcgtga ttgtcattga tgaagagcac gacagctcct acaagcagca ggaaggctgg
     2041 cgctatcatg cccgcgacct ggcggtgtat cgtgcgcaca gcgagcaaat cccgattatt
     2101 cttggctccg caacgcccgc gctggaaacg ttatgcaacg tccagcagaa aaaataccgc
     2161 ctgctgcgcc tgacccgtcg ggcagggaat gcgcgtccgg caattcaaca tgtgctggat
     2221 ttaaaaggtc agaaggtgca ggcaggtctg gctccggcgt taatcacccg tatgcgccag
     2281 catttacagg ccaacaatca ggttatcctc tttcttaatc gtcggggttt tgcgcctgcg
     2341 ctgctgtgcc acgactgcgg ctggatagcc gaatgcccac gttgcgatca ctactacacg
     2401 ctgcatcagg cgcaacagca tttgcactgt caccactgtg acagtcagcg tccggtgccg
     2461 cgccagtgcc cttcctgcgg ttccacgcac ctggtccccg tggggctggg caccgaacag
     2521 cttgaacaga cgcttgcgcc gatgttcccc ggcgtgccca tttcacgtat cgaccgcgat
     2581 accaccagcc gcaaaggggc gctggaacag caactggcga aagtgcatcg cggcggcgcg
     2641 aggattttga tcggcacaca aatgctggcg aaaggtcacc actttccgga tgtgacgctg
     2701 gtggcgttac tggatgtgga cggcgcgctg ttttctgccg attttcgctc ggcagaacgt
     2761 ttcgcccagc tttacaccca ggtcgccggt cgtgccgggc gtgcgggtaa acagggcgaa
     2821 gtggtgctgc aaacgtacca tccggaacat cctctgttgc aaacgttgct ctataaaggc
     2881 tacgacgcct ttgccgaaca ggcgctggct gagcgacgca tgatgcagct gccgccgtgg
     2941 accagccatg tgattgtgcg tgcggaagat cataacaatc agcacgcgcc gctgttcctg
     3001 caacaactgc gtaatctgat cctttccagc ccgctggcag acgacaaact gtggattctc
     3061 ggcccggttc cggctctggc acctaagcgt ggtggccgct ggcgctggca gatcttgttg
     3121 cagcaccctt cccgcgtgcg cttgcaacac atcattagtg gtacgctggc gcttattaat
     3181 acaataccgg attcccgcaa ggtgaaatgg gtgttggatg tcgatcccat cgaaggctaa
     3241 tgcgcaaacg ttgcgaggcg gatcgaaaaa ttcaatattc atcacacttt tcatgaaaat
     3301 tctgtaaccg ttttcacgcg ctatctgcta aaaatgttgc cgatgtgaag taaacatgga
     3361 tgtagtacgc ctgacgtacc aggcgaggag tgagtgtgaa agcgaagaag caggaaactg
     3421 ccgcgaccat gaaagacgtt gccctcaagg caaaagtctc tacagcgact gtctcccgag
     3481 cattaatgaa tcccgataaa gtctcccagg ccacccgtaa tcgggttgaa aaagcggccc
     3541 gggaagtggg ttatttaccg cagcctatgg ggcgcaacgt caagcgtaat gaatcccgca
     3601 ccattctggt gattgtcccg gatatctgcg atcccttctt tagcgaaatt attcgcggta
     3661 tcgaagttac ggcggcaaat cacggatatc tggtgctgat tggcgactgt gcgcatcaaa
     3721 atcagcagga aaaaaccttt atcgatttga tcatcaccaa gcaaattgat ggcatgttgc
     3781 tgctgggttc aaggctgccg tttgatgcca gcattgagga acagcgtaat ctgccgccga
     3841 tggtgatggc gaacgaattt gcaccggaac tggagctgcc taccgttcat atcgacaatc
     3901 tgaccgccgc atttgatgca gtaaattatt tatatgagca agggcataaa cggattggct
     3961 gtatagccgg tcccgaagag atgccactgt gtcactaccg cctgcaaggc tatgttcagg
     4021 cgctgcgtcg ctgcggaatt atggttgatc cacaatacat cgcccgtggc gacttcacct
     4081 tcgaagccgg aagcaaagca atgcaacagc tgcttgatct tccacaaccg cctactgcag
     4141 tcttctgcca tagcgatgtg atggcgctcg gcgcactttc tcaggcaaaa cgccaggggc
     4201 tgaaagtccc ggaagacctt tccataatcg gttttgataa catcgacctg acgcaatgtt
     4261 gtgatccgcc gctgacaacc atcgcgcagc cgcgttacga aatcggtcgg gaagctatgc
     4321 tgttattgct tgatcaaatg caggggcaac acgttggcag tggctctcgt ttaatggact
     4381 gcgaacttat catccgggga tcaacacgcg cgttacctta aagtaaacct ttaagactgc
     4441 cgtgactggt caaaggcccg ccgcttaagt aacatggcgg gctgacgaac gaataaatac
     4501 agcgaaacga tagtggcaca acgagattat gtacgccgca gccaaccggc accttcgcgg
     4561 cgaaaaaaga gcacctcacg gaaaaagcaa cgaaatctgc ctgcggtttc tcccgctatg
     4621 gtcgctattg ctgccgccgt tcttgtgacc tttatcggtg gtctgtactt cattacgcat
     4681 cacaagaaag aagagtccga gacgctgcaa agccagaaag tgaccggaaa cggactacca
     4741 ccaaaaccag aagaacgctg gcgctacatt aaagagctgg aaagtcgcca gccgggtgtg
     4801 cgtgcgccca cagaaccttc tgccggtggt gaagtgaaaa cgccggagca actgacacca
     4861 gaacaacgtc agcttcttga acaaatgcag gctgatatgc gccagcagcc aacgcagctg
     4921 gttgaggttc cgtggaatga acagacgccg gaacagcgtc agcaaacgct acaacgccag
     4981 cgtcaggcgc agcaattagc ggagcagcaa cgcctggctc agcagtcgcg tacgactgaa
     5041 caaagctggc agcagcagac gcgtacgtcg caagccgcgc cggtacaggc gcaaccgcgc
     5101 cagtctaaac cagcttctac tcagcagccg taccaggatc tgctgcaaac ccctgcgcac
     5161 acgaccgcgc agtcgaagcc gcagcaagct gcgccggttg ctcgtgccgc tgacgcgcca
     5221 aaaccgacgg cggagaaaaa agacgaacgc cgctggatgg tgcagtgcgg ttcgttcaga
     5281 ggcgcggaac aggcagagac ggtacgtgct cagctggcgt tcgaaggatt tgactcgaaa
     5341 atcaccacca acaatggctg gaatcgtgtg gtcattggcc cggtgaaagg caaagagaac
     5401 gcagacagca ccctcaatcg gttgaagatg gcgggtcata caaactgcat tcggctcgcc
     5461 gccgggggtt gaaaccctca aaatcccccc catctataat tgcattatgc cccgtacttt
     5521 tgtacggggt ttgtactctg tattcgtaac caaggggtca gctcgtgaca actatagtaa
     5581 gcgtacgccg taacggccat gtggtcatcg ctggtgatgg tcaggccacg ttgggcaata
     5641 ccgtaatgaa aggcaacgtg aaaaaggtcc gccgtctgta caacgacaaa gtcatcgcgg
     5701 gctttgcggg cggtactgcg gatgctttta cgctgttcga actgtttgaa cgtaaactgg
     5761 aaatgcatca gggccatctg gttaaagccg ccgttgagct ggcaaaagac tggcgtaccg
     5821 atcgcatgct gcgcaaactt gaagcactgc tggcagtcgc ggatgaaact gcatcgctta
     5881 tcatcaccgg taacggtgac gtggtgcagc cagaaaacga tcttattgct atcggctccg
     5941 gcggccctta cgcccaggct gcggcgcgcg cgctgttaga aaacactgaa cttagcgccc
     6001 gtgaaattgc tgaaaaggcg ttggatattg caggcgacat ttgcatctat accaaccatt
     6061 tccacaccat cgaagaatta agctacaaag cgtaaggatc tcccatgtct gaaatgaccc
     6121 cacgcgaaat cgtcagcgaa ctggataagc acatcatcgg ccaggacaac gccaagcgtt
     6181 ctgtggcgat tgctctgcgt aaccgctggc gtcgcatgca gctcaacgaa gagctgcgcc
     6241 atgaagtgac cccgaaaaat atcctgatga tcggcccgac cggtgtcggt aaaactgaaa
     6301 tcgcccgtcg tctggctaag ctggcgaatg cgccgttcat caaagttgaa gcgaccaaat
     6361 tcaccgaagt gggctatgtc ggtaaggaag tggattctat tattcgcgat ctgaccgatg
     6421 ccgccgtgaa aatggtacgc gtccaggcta tcgagaaaaa ccgttatcgc gctgaagaac
     6481 tggcagaaga acgtattctc gacgtgctga tcccacctgc taaaaacaac tggggacaga
     6541 ccgaacagca gcaggaaccg tccgctgctc gtcaggcatt ccgcaaaaaa ctgcgtgaag
     6601 gccagcttga tgacaaagaa atcgagatcg atcttgccgc agcaccgatg ggcgttgaaa
     6661 ttatggctcc tccaggcatg gaagagatga ccagccagct gcagtccatg ttccagaacc
     6721 tgggcggcca gaagcaaaaa gcgcgtaagc tgaaaatcaa agatgccatg aagctgctga
     6781 ttgaagaaga agcggcgaaa ctggtgaacc cggaagagct gaagcaagac gctatcgacg
     6841 ctgttgagca gcacgggatc gtgtttatcg acgaaatcga caaaatctgt aagcgcggcg
     6901 agtcttccgg tccggatgtt tctcgtgaag gcgttcagcg tgacctgctg ccgctggtag
     6961 aaggttgcac cgtttccacc aaacacggga tggtcaaaac tgaccacatt ctgtttatcg
     7021 cttctggcgc gttccagatt gcgaaaccgt ctgacctaat cccggaactg caaggtcgtc
     7081 tgccaatccg cgttgaactg caggcactga ccaccagcga cttcgagcgt attctgaccg
     7141 agccgaatgc ctctatcacc gtgcagtaca aagcactgat ggcgactgaa ggcgtaaata
     7201 tcgagtttac cgactccggt attaaacgca tcgcggaagc ggcatggcag gtgaacgaat
     7261 ctaccgaaaa catcggtgct cgtcgtttac acactgttct ggagcgttta atggaagaga
     7321 tttcctacga cgccagcgat ttaagcggtc aaaatatcac tattgacgca gattatgtga
     7381 gcaaacgtct ggatgcgttg gtggcagatg aagatctgag ccgttttatc ctataatcgc
     7441 gttcaatcat tttcatcatt gtttgatggg gctgaaaggc cccattttta ttggcgcgta
     7501 ttatgactga acaacaaatt agccgaactc aggcgtggct ggaaagttta cgacctaaaa
     7561 ccctccccct cgcctttgct gcaattatcg tcgggacggc gctggcatgg tggcaaggtc
     7621 attttgatcc gctggtcgcc ctgctggcac tgattaccgc cgggctatta cagatccttt
     7681 ctaacctcgc caatgattac ggcgatgcgg taaaaggcag cgataaacct gaccgcattg
     7741 ggccgctacg cggcatgcaa aaaggggtca ttacccagca agagatgaaa cgggcgctca
     7801 ttattaccgt cgtgctcatc tgtctctccg ggctggcact ggttgcagtg gcgtgccata
     7861 cgctggctga ttttgtcggt ttcctgattc ttggcgggtt gtcgatcatt gccgctatca
     7921 cctacaccgt gggcaatcgt ccttatggtt atatcggtct gggggatatt tccgtactgg
     7981 ttttctttgg ctggttaagc gtcatgggga gctggtattt acaggctcat acattgattc
     8041 cggcactgat ccttccggcg accgcatgcg gcctgctggc aacggcagta ctgaacatta
     8101 ataacctgcg tgatatcaat agcgaccgcg aaaacggcaa aaacacgctg gtggtgcgct
     8161 taggtgaagt gaacgcgcgt cgttatcatg cctgcctgct gatgggctct ctggtatgtc
     8221 tggcgctgtt taatctcttt tcgctgcata gcctgtgggg ctggctgttc ctgctggcgg
     8281 caccgttgct ggtgaagcaa gcccgttatg tgatgcggga aatggacccg gtggcgatgc
     8341 gaccgatgct ggaacgcact gtcaaggggg cgttactgac taacctgctg tttattttag
     8401 ggatattcct aagccagtgg gcagcataac tgacaaatat caattaacaa ttgatgattt
     8461 tgccaacagc ccacatagcg cgatatactg aaaattctcg cagcaactga atgttaagcc
     8521 tatgaaatac gatacttccg agctttgtga catctatcaa gaagatgtta acgtcgtgga
     8581 accgctgttc tccaactttg gcggacgggc gtcgtttggc ggacaaataa tcacggtaaa
     8641 atgtttcgag gacaacgggt tgctgtacga tctgctcgaa cagaatggcc gtggtcgtgt
     8701 tcttgtcgtc gatggcggtg gttctgttcg tcgcgcactg gtcgatgctg aactggcgcg
     8761 tctggcagta caaaatgaat gggaaggtct ggttatttac ggcgcggtgc gtcaggtaga
     8821 tgacctggaa gagttggata tcggcatcca ggcgatggcg gcaattccgg ttggtgccgc
     8881 tggcgaaggc attggcgaaa gcgatgtccg cgtcaatttt ggcggtgtaa ccttcttctc
     8941 cggcgaccat ctttatgccg acaataccgg gattattctt tcagaagatc cgctggatat
     9001 tgaatgataa gaaaggcacc gcaaggtgcc ttttttctgc gttacctgtt ggcctacaca
     9061 gtaaagaaat tacgcgaaag atgaagcgta atcagacctc ttccatgcga cccagcaggg
     9121 cctgcagacg ttcctgccag ccgttctgct gttctttcag atggttgttc tcacgctcca
     9181 gctcttcgcg ctgatgctgg gcattttgaa cttcctgcga cagtgagttg tttttttctt
     9241 tcagctcttc gatttccatc tgcaacagag tgatggtatc aatcgcctgc tgtacttttg
     9301 cttccagttt ctcaaacact tctaatgaca ttgtcatacc tctcctgaat tgcaaggcgt
     9361 tgatggataa aaaatcctcg tcccgattac cggtgacgcc ttaataaata cgagcgcact
     9421 ttagttagct ccgattgtat gaagccgcgc catcgctgtc cagcggcacg ccttgcagat
     9481 tacggtttgc cacacttttc atccttctcc tggtgacata atccacatca atcgaaaatg
     9541 ttaataaatt tgttgcgcga atgatctaac aaacatgcat catgtacaat cagatggaat
     9601 aaatggcgcg ataacgctca ttttatgacg aagcacacac attttaagtt cgatatttct
     9661 cgtttttgct cgttaacgat aagtttacag catgcctaca agcatcgtgg aggtccgtga
     9721 ctttcacgca tacaacaaac attaactctt caggatccga ttatgagtca aacatcaacc
     9781 ttgaaaggcc agtgcattgc tgaattcctc ggtaccgggt tgttgatttt tttcggtgtg
     9841 ggttgcgttg cagcactaaa agtcgctggt gcgtcttttg gtctgtggga aatcagtgtc
     9901 atttggggac tgggggtggc aatggctatc tacctgaccg caggggtttc cggcgcgcat
     9961 cttaatcccg ctgttaccat tgcattgtgg ctgtttgcct gtttcgacaa gcgcaaagtt
    10021 attcctttta tcgtttcaca agttgccggc gctttctgtg ctgcggcttt agtttacggg
    10081 ctttactaca atttattttt cgacttcgag cagactcatc acattgttcg cggcagcgtt
    10141 gaaagtgttg atctggcagg cactttctct acttacccta atcctcatat caattttgtg
    10201 caggctttcg cagttgagat ggtgattacc gctattctga tggggctgat cctggcgtta
    10261 acggacgatg gcaacggtgt accacgcggc cctttggctc ccttgctgat tggtctactg
    10321 attgcggtca ttggcgcatc tatgggccca ttgacgggtt ttgccatgaa cccagcgcgt
    10381 gacttcggtc cgaaagtctt tgcctggctg gcgggctggg gcaatgtcgc ctttaccggc
    10441 ggcagagaca ttccttactt cctggtgccg ctttttggcc ctatcgttgg cgcgattgta
    10501 ggtgcatttg cctaccgcaa actgattggt cgccatttgc cttgcgatat ctgtgttgtg
    10561 gaagaaaagg aaaccacaac tccttcagaa caaaaagctt cgctgtaata tgactacggg
    10621 acaattaaac atgactgaaa aaaaatatat cgttgcgctc gaccagggca ccaccagctc
    10681 ccgcgcggtc gtaatggatc acgatgccaa tatcattagc gtgtcgcagc gcgaatttga
    10741 gcaaatctac ccaaaaccag gttgggtaga acacgaccca atggaaatct gggccaccca
    10801 aagctccacg ctggtagaag tgctggcgaa agccgatatc agttccgatc aaattgcagc
    10861 tatcggtatt acgaaccagc gtgaaaccac tattgtctgg gaaaaagaaa ccggcaagcc
    10921 tatctataac gccattgtct ggcagtgccg tcgtaccgca gaaatctgcg agcatttaaa
    10981 acgtgacggt ttagaagatt atatccgcag caataccggt ctggtgattg acccgtactt
    11041 ttctggcacc aaagtgaagt ggatcctcga ccatgtggaa ggctctcgcg agcgtgcacg
    11101 tcgtggtgaa ttgctgtttg gtacggttga tacgtggctt atctggaaaa tgactcaggg
    11161 ccgtgtccat gtgaccgatt acaccaacgc ctctcgtacc atgttgttca acatccatac
    11221 cctaggctgg gacgacaaaa tgctggaagt gctggatatt ccgcgcgaga tgctgccaga
    11281 agtgcgtcgt tcttccgaag tatacggtca gactaacatt ggcggcaaag gcggcacgcg
    11341 tattccaatc tccgggatcg ccggtgacca gcaggccgcg ctgtttggtc agttgtgcgt
    11401 gaaagaaggg atggcgaaga acacctatgg cactggctgc tttatgctga tgaacactgg
    11461 cgagaaagcg gtgaaatcag aaaacggcct gctgaccacc atcgcctgtg gcccgactgg
    11521 cgaagtgaac tatgcgttgg aaggtgcggt gtttatggca ggcgcatcca ttcagtggct
    11581 gcgcgatgag atgaagttga ttaacgacgc ctacgattcc gaatatttcg ccaccaaagt
    11641 gcaaaacacc aatggtgtgt atgtggttcc ggcatttacc gggctgggtg cgccgtactg
    11701 ggacccgtat gcgcgcgggg cgattttcgg tctgactcgt ggggtgaacg ctaaccacat
    11761 tatacgcgcg acgctggagt ctattgctta tcagacgcgt gacgtgctgg aagcgatgca
    11821 ggccgactct ggtatccgtc tgcacgccct gcgcgtggat ggtggcgcag tagcaaacaa
    11881 tttcctgatg cagttccagt ccgatattct cggcacccgc gttgagcgcc cggaagtgcg
    11941 cgaagtcacc gcattgggtg cggcctatct cgcaggcctg gcggttggct tctggcagaa
    12001 cctcgacgag ctgcaagaga aagcggtgat tgagcgcgag ttccgtccag gcatcgaaac
    12061 cactgagcgt aattaccgtt acgcaggctg gaaaaaagcg gtcaaacgcg cgatggcgtg
    12121 ggaaaaacac gacgagtaat gtaaatgccg gatgaagcgt ttatgccgca tccggtagtc
    12181 ctgaaacgtg cgggggcaac cccgcacaca tcaataatcc cacccttccc ctgtgctaca
    12241 cttcgcgcca ttccttactg cttagagttt gctatgagac gagaacttgc catcgaattt
    12301 tcccgcgtca ccgaatctgc ggcgctggct ggctacaaat ggttaggacg cggcgataaa
    12361 aacaccgcgg acggcgcggc ggtaaacgcc atgcgtatta tgctcaacca ggtcaacatt
    12421 gacggcacca tcgtcattgg tgaaggtgaa atcgacgaag caccgatgct ctacattggt
    12481 gaaaaagtcg gtactggtcg cggcgacgcg gtagatattg ctgttgatcc gattgaaggc
    12541 acgcgcatga cggcgatggg ccaggctaac gcgctggcgg tgctggcagt aggcgataaa
    12601 ggctgcttcc tcaatgcgcc ggatatgtat atggagaagc tgattgtcgg gccgggagcc
    12661 aaaggcacca ttgatctgaa cctgccgctg gcggataacc tgcgcaatgt agcggcggcg
    12721 ctcggcaaac cgttgagcga actgacggta acgattctag ctaaaccacg ccacgatgcc
    12781 gttatcgctg aaatgcagca actcggcgta cgcgtatttg ctattccgga tggcgacgtt
    12841 gcggcctcaa ttctcacctg tatgccagac agcgaagttg acgtgctgta cggtattggt
    12901 ggcgcgccgg aaggcgtagt ttctgcggcg gtgatccgcg cattagatgg cgacatgaac
    12961 ggtcgtctgc tggcgcgtca tgacgtcaaa ggcgacaacg aagagaatcg tcgcattggc
    13021 gagcaggagc tggcacgctg caaagcgatg ggcatcgaag ccggtaaagt attgcgcctg
    13081 ggcgatatgg cgcgcagcga taacgtcatc ttctctgcca ccggtattac caaaggcgat
    13141 ctgctggaag gcattagccg caaaggcaat atcgcgacta ccgaaacgct gctgatccgc
    13201 ggcaagtcac gcaccattcg ccgcattcag tccatccact atctggatcg caaagacccg
    13261 gaaatgcagg tgcacatcct ctgattggtt tgatcgattg agccttccag tccttcggga
    13321 ctggaatttt tttgttcgga gaacgaagat aaggcaagtc aatcaaaaca ggagaaaaac
    13381 atggctgatt gggtaacagg caaagtcact aaagtgcaga actggaccga cgccctgttt
    13441 agtctcaccg ttcacgcccc cgtgcttccg tttaccgccg ggcaattcac caagcttggc
    13501 cttgaaatcg acggcgaacg cgtccagcgc gcctactcct atgttaactc gcccgataat
    13561 cccgatctgg agttttacct ggtcaccgtc cccgatggca aattaagccc acgattggcg
    13621 gcactgaaac caggcgatga agtgcaggtg gttagcgaag cagctggctt ctttgttctg
    13681 gatgaagtac cagattgcga aacgctatgg atgctggcaa ccggtacagc gattggccct
    13741 tatttatcga ttctgcaact aggcaaagat ttagatcgct tcaaaaatct ggtcctggtt
    13801 cacgccgcac gttatgccgc cgacttaagc tatttgccac tgatgcaaga actggaaaaa
    13861 cgctacgaag gcaaactgcg cattcagacg gtggtcagtc gggaaacggc agcggggtcg
    13921 ctcaccggac ggataccggc attaattgaa agtggggaac tggaaagcgc gattggcctg
    13981 ccgatgaata aagaaaccag ccatgtgatg ctgtgcggca atccacagat ggtgcgcgat
    14041 acacaacagt tgctgaaaga gacccggcag atgacgaaac atttacgtcg ccgaccgggc
    14101 catatgacag cggagcatta ctggtaagcg gttacttatc gataaacggc acgatgagca
    14161 aatccgcact catcttattg atcatcccgc gatatgccgg catcaaacgg ttgataaatg
    14221 agtgatgatg accacagaca aggaggtcgc actgctcttt ttgcataatt tccagcagtg
    14281 tttccggcat ttctccgcgt tcaatacgca gttttgtctt cggccattga atatttttcg
    14341 tcagtttata cagcttgtta tccgacttat tcttcaacaa ttgaagaata tcttctgttg
    14401 cagggaagta gatacccgga tacaactcgc ttaagccatc atcaatatga attaacgtca
    14461 ggtgagcgtc attatgtctg gcgagctcca gagctttatt caccagtaag gcatcttctt
    14521 cattcccgga aattgccacg ccaatgtgtt tataagccat gtttaactcc ttctaaagca
    14581 actccatcaa gctaacgaac gcagtgataa ctcaaaaata atcatctcgg cctggcatga
    14641 gaaagtgaag gccgcatcaa gctcaacttg cccctccaga tccttaatct tgtaggccac
    14701 gctggcccct tcatctgcag aggatgcagc ggcggcaagc tctttcagtt tggtcataaa
    14761 agactctgct tcttcgcggg tggcaaaaaa gcgcgaaaac ttactggtac agttgtcgtt
    14821 atcaatcacc gtaccgatat caatcgcaca tcctttagta ctgcatttat ctacgacatc
    14881 tttcataggg cacctctgta tattcgcctc tctgtcgatt acgacttaag aataatgcgc
    14941 cgttaaggga agaacaaaca agtaatgatc ttatggatta ccattttttt gatattgctt
    15001 aaggtgaaga gttcagaagg attttccggg tattgtcatt tgcatcgtgg aaataacaat
    15061 cccggaaaaa aatagcagta agagatatat taaaggttaa ttacttgatt tattgtcggc
    15121 tttatacttc acatcctgag tatctttacc
//
LOCUS       DADMHM010000088        14927 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.089, whole genome shotgun sequence.
ACCESSION   DADMHM010000088 DADMHM010000000
VERSION     DADMHM010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14927)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14927)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14927
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.089"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..180
                     /locus_tag="JN125_002344"
     CDS             <1..180
                     /locus_tag="JN125_002344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016247257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HAY8872111.1"
                     /translation="KEELLAPEVFHALTTALRREPRLRFTLTEVNDLPVRQTPMFTLL
                     REAGFSSSPQGLDWG"
     gene            complement(231..578)
                     /gene="grxD"
                     /locus_tag="JN125_002345"
     CDS             complement(231..578)
                     /gene="grxD"
                     /locus_tag="JN125_002345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monothiol glutaredoxin 4"
                     /protein_id="HAY8872112.1"
                     /translation="MSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACG
                     ERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKE
                     TAAKYKSEEPDAE"
     gene            912..1727
                     /locus_tag="JN125_002346"
     CDS             912..1727
                     /locus_tag="JN125_002346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HAY8872113.1"
                     /translation="MARINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKA
                     DKKKSTATTKKTQKTAKKAASKSTTKSKTASSVKKSSITASKNAKTRSKHAVNKTASA
                     SFTEKCTKRKGYKSHCVKVKNAASGTLADAHKAKVQKATKVAMNKLMQQIGKPYRWGG
                     SSPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSELKNGDLVFFRTQG
                     RGTADHVGVYVGNGKFIQSPRTGQEIQITSLSEDYWQRHYVGARRVMTPKTLR"
     gene            1855..2436
                     /gene="sodB"
                     /locus_tag="JN125_002347"
     CDS             1855..2436
                     /gene="sodB"
                     /locus_tag="JN125_002347"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020079002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HAY8872114.1"
                     /translation="MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIK
                     GTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFG
                     SFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWE
                     HAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA"
     gene            complement(2582..3751)
                     /locus_tag="JN125_002348"
     CDS             complement(2582..3751)
                     /locus_tag="JN125_002348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8872115.1"
                     /translation="MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGM
                     LISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRIL
                     TSLNHGAFFGLGSVVAASVEPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRM
                     SFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMF
                     TLYTYIYPVLQSITHATPVFVTAMLVLIGVGFSIGNYPGGKLADRSVNGTLKGFLLLL
                     MVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAF
                     NLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS"
     gene            complement(3917..4006)
                     /gene="ynhF"
                     /locus_tag="JN125_002349"
     CDS             complement(3917..4006)
                     /gene="ynhF"
                     /locus_tag="JN125_002349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein YnhF"
                     /protein_id="HAY8872116.1"
                     /translation="MSTDLKFSLVTTIIVLGLIVAVGLTAALH"
     gene            4305..5330
                     /gene="purR"
                     /locus_tag="JN125_002350"
     CDS             4305..5330
                     /gene="purR"
                     /locus_tag="JN125_002350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor PurR"
                     /protein_id="HAY8872117.1"
                     /translation="MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELH
                     YSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLE
                     KQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVID
                     NAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQ
                     GDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDN
                     VRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADG
                     PFRDYRR"
     gene            complement(5327..6259)
                     /locus_tag="JN125_002351"
     CDS             complement(5327..6259)
                     /locus_tag="JN125_002351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY8872118.1"
                     /translation="MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWL
                     AVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIV
                     RPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAF
                     RDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKR
                     VVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQND
                     MSPALTWLLEYLGDSETLNKEWLREPEETPATGD"
     gene            6372..7583
                     /locus_tag="JN125_002352"
     CDS             6372..7583
                     /locus_tag="JN125_002352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bcr/CflA family multidrug efflux MFS
                     transporter"
                     /protein_id="HAY8872119.1"
                     /translation="MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVS
                     ASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRF
                     VQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQ
                     AIFATLFAITVVLILPIFWLKPTTKAGNNSQDGLTFTDLLRSKTYRGNVLIYAACSAS
                     FFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLV
                     LFAVSVIATWTAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAA
                     LQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEAGCQNH
                     GNAEVAHSESH"
     gene            7874..9022
                     /gene="cfa"
                     /locus_tag="JN125_002353"
     CDS             7874..9022
                     /gene="cfa"
                     /locus_tag="JN125_002353"
                     /EC_number="2.1.1.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclopropane fatty acyl phospholipid synthase"
                     /protein_id="HAY8872120.1"
                     /translation="MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNP
                     DFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGAR
                     LFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMIC
                     EKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSMVGVTISAEQQKMAQERCEGLDVTIL
                     LQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLN
                     VDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPE
                     IADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR"
     gene            complement(9062..9703)
                     /gene="ribE"
                     /locus_tag="JN125_002354"
     CDS             complement(9062..9703)
                     /gene="ribE"
                     /locus_tag="JN125_002354"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HAY8872121.1"
                     /translation="MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAH
                     NGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGH
                     IMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVH
                     LIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA"
     gene            9918..11291
                     /gene="mdtK"
                     /locus_tag="JN125_002355"
     CDS             9918..11291
                     /gene="mdtK"
                     /locus_tag="JN125_002355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MATE transporter MdtK"
                     /protein_id="HAY8872122.1"
                     /translation="MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDM
                     AAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLI
                     MLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPG
                     MVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSM
                     RDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQI
                     ALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTV
                     SLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITF
                     TAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSVI
                     ILQRASR"
     gene            complement(11332..12588)
                     /locus_tag="JN125_002356"
     CDS             complement(11332..12588)
                     /locus_tag="JN125_002356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872123.1"
                     /translation="MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENT
                     VVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRH
                     PEGEFSVDQGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGE
                     LLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGT
                     DGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRA
                     PVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDGVTFIVGNINL
                     NGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITD
                     ASRQTLCNALKLQPDEDGIGATLQPA"
     gene            12896..12972
                     /locus_tag="JN125_002357"
     tRNA            12896..12972
                     /locus_tag="JN125_002357"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:12930..12932,aa:Val,seq:gac)
     gene            12977..13053
                     /locus_tag="JN125_002358"
     tRNA            12977..13053
                     /locus_tag="JN125_002358"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:13011..13013,aa:Val,seq:gac)
     gene            13161..13466
                     /locus_tag="JN125_002359"
     CDS             13161..13466
                     /locus_tag="JN125_002359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monooxygenase"
                     /protein_id="HAY8872124.1"
                     /translation="MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTES
                     EKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA"
     gene            13592..14927
                     /locus_tag="JN125_002360"
                     /pseudo
     CDS             13592..14927
                     /locus_tag="JN125_002360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416183.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-NAD(P)-binding protein"
BASE COUNT         3679 a         3828 c         3558 g         3862 t
ORIGIN      
        1 aaagaggaat tactcgcccc agaggttttc cacgcgctga ctaccgcact gcgtcgcgaa
       61 ccacggctgc gctttacgct aacagaagtg aatgatctac cggtccggca aacgccgatg
      121 tttacgctgc tgcgtgaggc gggattttca agttcgccac aagggctgga ttggggatag
      181 agaaaggact gacggatgcc cgttcgcatc cgtcagtatt gcaggacgga ttattccgcg
      241 tccggctctt cagacttgta tttagcggca gtttctttga tcagctgctg cagttcgcca
      301 cgctgataca tttcgatcac gatatcacaa ccgccgacca gctcgccgtc aacccacagt
      361 tgcgggaagg tcggccagtt agcatatttc ggcagttccg cacgaatgtc cggattctgc
      421 agaatatcaa cataggcaaa acgttcgcca catgcggcaa gcgcctggac tgcctgggca
      481 gagaaaccgc agctcggcag tttcggtgaa cctttcatgt acagcaggat cgggttttca
      541 gcaatctggc gttggatttt ttcgatagtg gtgctcattg tcttgcttcc tcaaacttct
      601 ttacggcagt aatctgacat tgtagcgggt cagtgcggca tcggaaaata acattttcat
      661 cacgcttttg ctattttatc cctttgctct atttgttgca tttcaaatat tcgtttcttc
      721 tctgatgccg gcaaactggc gtatttataa ccatttttag ctttcactgc tgcatttttt
      781 tgcgctcgcc aacgaaacgt attttttaac aataaaagct attaactttc tcttcttcta
      841 tgcattagaa tcatcaagtt ttgtaaatca gacgcaggca tgatagacct gccttaacag
      901 agggacgctc agtggcgcgg ataaaccgta tttcgatcac gctctgtgct ttacttttta
      961 ccaccctgcc tttaacgcct atggcccatg cttcaaagca agccagggag agttctgcta
     1021 ccactcatat caccaaaaaa gcagataaaa agaaaagcac ggcaaccacc aaaaagaccc
     1081 agaaaacagc gaaaaaagcc gccagtaaaa gtacgaccaa aagcaaaacc gcttcttccg
     1141 ttaaaaaatc ttccattacc gcttctaaaa acgccaaaac tcgcagcaaa cacgccgtca
     1201 ataaaacggc ctcagccagc tttaccgaaa agtgtaccaa acgtaagggc tataaatcgc
     1261 attgtgtgaa agtcaaaaat gccgcgtcag gaactcttgc cgacgcgcac aaagcgaagg
     1321 tgcaaaaagc tacgaaagtg gcaatgaata aactgatgca gcaaattggt aagccatatc
     1381 gttggggtgg cagctcaccg cgtaccggtt ttgattgcag cggcctggtt tattacgctt
     1441 ataaagattt ggtgaaaatt cgtattccgc gtacggcgaa tgaaatgtat cacctgcgtg
     1501 atgcagcgcc aatcgaacgt agtgaactga aaaacggcga cctggtcttt ttccgtactc
     1561 agggacgcgg cacagccgat catgtcggcg tgtatgtcgg caacggcaaa tttattcagt
     1621 caccgcgcac aggtcaggaa attcaaatca cttctctcag tgaagactac tggcagcgcc
     1681 actatgttgg cgctcgtcgg gtaatgaccc caaaaacact tcgctaaaac tttaccctgt
     1741 tgttacggca acagggtaag ttcatctttt gtctcacctt ttaatttgct accctatcca
     1801 tacgcacaat aaggctattg tacgtatgca aattaataat aaaggagagt agcaatgtca
     1861 ttcgaattac ctgcactacc atatgctaaa gatgctctgg caccgcacat ttctgcggaa
     1921 actatcgagt atcactacgg caagcatcat cagacttatg tcactaacct gaacaacctg
     1981 attaaaggta ccgcgtttga aggtaaatca ctggaagaga ttattcgcag ctctgaaggt
     2041 ggcgtattca acaacgcagc tcaggtctgg aaccatactt tctactggaa ctgcctggca
     2101 ccgaacgccg gtggcgaacc gactggaaaa gtcgctgaag ctatcgccgc atcttttggc
     2161 agctttgccg atttcaaagc gcagtttact gatgcagcga tcaaaaactt tggttctggc
     2221 tggacctggc tggtgaaaaa cagcgatggc aaactggcta tcgtttcaac ctctaacgcg
     2281 ggtactccgc tgaccaccga tgcgactccg ctgctgaccg ttgatgtctg ggaacacgct
     2341 tattacatcg actatcgcaa tgcacgtcct ggctatctgg agcacttctg ggcgctggtg
     2401 aactgggaat tcgtagcgaa aaatctcgct gcataataac tgatggcaaa tgcagcattg
     2461 cctgatgcgc ttcgtttacc atgccaacgc ggatgaggcg ttaacagcgc attcggcaag
     2521 ataaatcgca cgttgtcagc aactgtaacg cagaaggtta tccttctgcg tttttgttta
     2581 attagctgtt agcaacgcaa actgtttcag gttgttttct ggctgacata aacaccagca
     2641 ataatgccag tcccgcgaca atcgctccca tcaccggcac aaagctgtat cccagcccag
     2701 cggaaattac cgcaccacca gcagctgctc ccagcgcatt tccaagatta aaggcaccaa
     2761 tattgactga tgaagacaga cctggcgctt cactggcgac acgcatcacg cgcatctgta
     2821 acggcggtac gaccgcaaag gttgctgcgc cccacaccac catgctaata gctgcgccga
     2881 actcattgcg ggccaggaac gggattgcca gcataatcac catcaacaac aacaaaaagc
     2941 ctttcaacgt gccgttaact gaacgatctg ccagtttgcc gccgggatag ttaccgatag
     3001 agaatccgac accaatcagc accagcattg ccgtgacgaa caccggtgtt gcgtgggtaa
     3061 tactttgcag taccggatag atataggtgt agagagtaaa cattgcacca gctcccagta
     3121 ccgtcgtcag caatgcagac agcacctgcg gacgcattaa taccgccagc tcttttttca
     3181 cttcaggtcg tgcccctgca ccacctttag gtaatgagaa gaacagactt accattgaaa
     3241 tcactcccag ccccgccgtt gccagaaatg acatccgcca gccgatggtt tcacccaacc
     3301 aggtcgccgc cggcacgcca ccgatatttg ccagggttaa ccccataaac atagtggcaa
     3361 ctgcgctggc ctgtttatgt tttggctcca cgcttgcggc cacgactgaa cccaaaccaa
     3421 aaaatgctcc gtgattcagg ctggtcaaaa tgcgtgaaag catcagggtc atataatccg
     3481 gcgcgatggc ggaaagtacg ttgccgagcg tgaaaattgc catcaggaaa atcaacgcac
     3541 tgcggcgggc acgatgagaa agtagaagcg tcatcagcgg cgcgccaacc attacgccaa
     3601 ctgcataggc actgattaac attccggcag cgggaatcga gacatccaca ccgcgcgcaa
     3661 tgacgggcaa caagcccatt ggcgagaact ccgttgtccc gataccaaac gcgccaatcg
     3721 ccagcgccag caacggatag ttaattttca tgccttattt ccacctcttc gcgtcattac
     3781 gcgatattca ttaaagtggc gaaagcatga cagcaatcac aaaaaaatga aaataacaaa
     3841 aagagaaaac acttttgcca ttttgctaac aaacaggaag gagatgcgag ggagaacgcg
     3901 ctccctcgag aggaaatcag tgcagcgcgg cagtcaaacc cacggccacg atcaaaccga
     3961 ggacgataat cgttgttacc agtgaaaatt taaggtcggt gctcatcaag ttttctcctt
     4021 ttttattacc acacaaatag tgatattacg catttttaca cactgtgatg aaaaaatctc
     4081 ccgtcattta taatgataag tgtttttacc acttcccctt ttcgtcaaga tcggccaaaa
     4141 ttccacgctt acactatttg cgtactggcc attgacccct tcctgacgct ccgtgtcgtt
     4201 tttccggcgt accgcaacac ttttgttgtg cgtaaggtgt gtaaaggcaa acgtttacct
     4261 tgcgattttg caggagctga agttagggtc tggagtgaaa tggaatggca acaataaaag
     4321 atgtagcgaa acgagcaaac gtttccacta caactgtgtc acacgtaatc aacaaaacac
     4381 gtttcgtcgc tgaagaaacg cgcaacgccg tgtgggcagc gattaaagaa ttacactact
     4441 cccctagcgc ggtggcgcgt agcctgaagg ttaaccacac caagtctatc ggtttgctgg
     4501 cgaccagcag cgaagcggcc tattttgccg agatcattga agcggttgaa aaaaattgct
     4561 tccagaaagg ttacaccctg attctgggta atgcgtggaa caatcttgag aaacagcggg
     4621 cttatctgtc gatgatggcg caaaaacgcg tcgatggtct gctggtgatg tgttctgagt
     4681 acccagagcc gttgctggcg atgctggaag agtatcgcca tatcccaatg gtggtgatgg
     4741 actggggtga agcaaaagct gacttcaccg atgcggtcat tgataacgcg ttcgaaggcg
     4801 gctacatggc cgggcgttat ctgattgaac gcggtcaccg cgaaatcggc gtcatccccg
     4861 gcccgctgga acgtaacacc ggcgcaggcc gccttgccgg ttttatgaag gcgatggaag
     4921 aagcgatgat caaggtgccg gaaagctgga ttgttcaggg tgactttgaa cccgaatctg
     4981 gttatcgcgc catgcagcaa atactgtcgc agccgcatcg ccctactgcc gtcttctgtg
     5041 gtggcgatat catggcaatg ggcgcacttt gtgctgctga tgaaatgggt ctgcgcgtcc
     5101 cgcaggatgt ttcgctgatc ggttatgata acgtgcgcaa cgcccgctat tttacgccgg
     5161 cgctgaccac gatccaccag ccaaaagatt cgctgggtga aacagcgttc aacatgctgt
     5221 tggatcgtat cgtcaacaaa cgtgaagaac cgcagtccat tgaagtgcat ccgcgcttga
     5281 ttgaacgccg ctccgtggct gacggcccgt tccgcgacta tcgtcgttaa tcacccgttg
     5341 cgggagtctc ttccggctcc cgcagccact ccttattcag cgtctcacta tcgccgagat
     5401 actcaagcag ccaggttaac gcaggcgaca tatcattttg ctgccatgtc agacaacatg
     5461 ccgaatccgg gaaggggttt tccaattcaa gtgctaccca cttcccctca ttaagccacg
     5521 gtttggcgaa atgtgttggc accatcccta tgcataatcc tgccgagata caggttgccg
     5581 atgattccca gtcaggcacg acaactcttt tttggttatc cagcaaccag gtaatacgtt
     5641 taggtagcgt tcgcgaggtg tcttcgcgca ccaacgacgg ccagttgcgc aacgtatcat
     5701 cgctgaatgg gccatccatc aacgccagcg ggtggtggct ggcaacaacg caactccagc
     5761 ttagcatccc catatcccgg aaggcataac gaccgcctac cggaatcgcg cgtgttgcgc
     5821 caatcgccag ttccacgcgc ccgtcggaaa gcgcatccca gacaccgttg aacacttcct
     5881 gaaagacaag aagttcgaca tcatcaaaat ggcgataaaa atcaacgatc atctgccgtg
     5941 tacgttctgg cctgacaata ttatccactg cgatagctaa ctgaccgcgc cagccgttcg
     6001 ctatctgctg acattgctgg cgggtgatct gcattttttt gacaacagag cgcccttctt
     6061 tgagaaacca cgctccagca gcggtcagct ccacatcacg gtgccgtcgt tcaaagagcg
     6121 gcaccgccag ccactcttcc agctgacgca cggtatagct gaccgcagaa ggaacgcgat
     6181 gcagctcctg tgccgcagcg ctaaaactac cattacgcgc taccgcatca acaacttcga
     6241 gtgaatattc tgaccacata gtctgcctgc aaaatttttg aaatcagtca tcaaatatta
     6301 ccgtttcaca acactaattt cactccctac actttgcggc ggtgtttaat tgagagattt
     6361 agagaatata catgcaacct gggaaaagat ttttagtctg gctggcgggt ttgagcgtac
     6421 tcggttttct ggcaaccgat atgtatctgc ctgctttcgc cgccatacag gccgacctgc
     6481 aaacgcctgc gtctgctgtc agtgccagcc ttagtctgtt ccttgccggt tttgccgcag
     6541 cccagcttct gtgggggcca ctctccgacc gttatggtcg taaaccggtg ttattaatcg
     6601 gcctgacaat ttttgcgtta ggtagtctgg ggatgctgtg ggtagaaaac gccgctacgc
     6661 tgctggtatt gcgttttgta caggctgtgg gtgtctgcgc cgcggcggtt atctggcaag
     6721 cgttagtgac ggattattat ccttcacaga aagttaaccg aatttttgcg accatcatgc
     6781 cgctggtggg tctatctccg gccctggctc ctctgttagg aagctggctg ctggtccatt
     6841 tttcctggca ggcgattttc gccaccctgt ttgccattac cgtggtgctg attctgccta
     6901 ttttctggct caaacccacg acgaaggccg gtaacaatag tcaggatggt ctgaccttta
     6961 ccgacctgct acgttctaaa acctatcgcg gcaacgtgct gatatacgcg gcctgttcag
     7021 ccagtttttt tgcatggctg accggttcac cgttcatcct tagtgaaatg ggctacagcc
     7081 cggcagttat tggtttaagt tatgtcccgc aaactatcgc gtttctgatt ggtggttatg
     7141 gctgtcgcgc cgcgctgcag aaatggcaag gcaagcagtt attaccgtgg ttgctggtgc
     7201 tgtttgctgt cagcgtcatt gcgacctgga ctgcgggctt cattagccat gtgtcgctgg
     7261 tcgaaatcct gatcccattc tgtgtgatgg cgattgccaa tggcgcgatc taccctattg
     7321 ttgtcgccca ggcgctgcgt cccttcccac acgcaactgg tcgcgccgca gcgttgcaga
     7381 acactctaca actgggtctg tgcttcctcg caagtctggt agtttcctgg cttattagta
     7441 tcagcacgcc attgctcacc accaccagcg tgatgttatc aacagtagtg ctggtcgcgc
     7501 tgggttacat gatgcaacgt tgtgaagaag ctggctgcca gaatcatggc aatgccgaag
     7561 tcgctcatag cgaatcacac tgatctatat cgatatactt atacttaggc tgctaacaaa
     7621 attttgttgt atgattgaaa ttagcggcct atactaattt cgagttgtta aagctacgat
     7681 aaatattatg tttttacggg gacaggatcg ttcccgactc actatggatg gtcatttcgg
     7741 caagggttcc tcctttccct ctgttctacg tcggattata gactcgcggt tttttctgcg
     7801 agatttctca caaagcccaa aaagcgtcta cgctgtttta aggttctgat caccgaccag
     7861 tgatggagaa actatgagtt catcgtgtat agaagaagtc agcgtaccgg atgacaactg
     7921 gtaccgtatc gccaacgaat tacttagccg tgccggtata gccattaacg gttctgcccc
     7981 ggcggatatt cgtgtgaaaa accccgattt ttttaaacgc gttctgcaag aaggctcttt
     8041 ggggttaggc gaaagttata tggatggctg gtgggaatgt gaccgactgg atatgttttt
     8101 tagcaaagtc ttacgcgcag gtctcgagaa ccaactcccc catcatttca aagacacgct
     8161 gcgtattgcc ggcgctcgtc tcttcaatct gcagagtaaa aaacgtgcct ggatagtcgg
     8221 caaagagcat tacgatttgg gtaatgactt gttcagccgc atgcttgatc ccttcatgca
     8281 atattcctgc gcttactgga aagatgccga taatctggaa tctgcccagc aggcgaagct
     8341 caaaatgatt tgtgaaaaat tgcagttaaa accagggatg cgcgtactgg atattggctg
     8401 cggctggggc ggactggcac actacatggc atctaattat gacgtaagca tggtgggcgt
     8461 caccatttct gccgaacagc aaaaaatggc tcaggaacgc tgtgaaggcc tggatgtcac
     8521 cattttgctg caagattatc gtgacctgaa cgaccagttt gatcgtattg tttctgtggg
     8581 gatgttcgag cacgtcggac cgaaaaatta cgatacctat tttgcggtgg tggatcgtaa
     8641 tttgaaaccg gaaggcatat tcctgctcca tactatcggt tcgaaaaaaa ccgatctgaa
     8701 tgttgatccc tggattaata aatatatttt tccgaacggt tgcctgccct ctgtacgcca
     8761 gattgctcag tccagcgaac cccactttgt gatggaagac tggcataact tcggtgctga
     8821 ttacgatact acgttgatgg cgtggtatga acgattcctc gccgcatggc cagaaattgc
     8881 ggataactac agtgaacgct ttaaacggat gtttacctat tatctgaatg cctgcgcagg
     8941 tgctttccgc gcccgtgata ttcagctctg gcaggtcgtg ttctcacgcg gtgttgaaaa
     9001 cggccttcga gtcgctcgct aaaggctatt ctatcgcccc ctctccgggg gcgatttcag
     9061 atcaggcttc tgtacctggt tgattcatgg cattttctcg tgccgccagc acacgttcta
     9121 ccgtatctac cactgcctga gtttgtggat caatttcaat gttgacgcgt gcgccgagtt
     9181 ttttcttccc aagagtcgtg cgttccagag tttccggaat taaatggacg caaaaacgcg
     9241 ttggcgtgac ttcgccgacg gtcaggctaa taccgtcgat gccaataaat cctttgtaca
     9301 ggatatattt catcaactga ctatcctgga ctttaaacca gatctggcga ttattttccg
     9361 aggttaatat tttcgccact tcagcggtgg tcataatatg acctgacatt aagtgtccgc
     9421 caatttcatc actgaatttc gccgcacgct caacgtttac ccaatccccc acttttaaat
     9481 cgccaagatt ggtaatgcgt aacgtttctt tcatcaggtc aaaactgaca tggttgccgt
     9541 taatttccgt cacggtcagg cagcaaccgt tatgcgccac ggaagcaccg gtttccaggc
     9601 cgtccagcat gtggtcgggt aactccacca catgcgtacg aaaatttggt ttctcgtcaa
     9661 tcgacaccag ttttgcggtg ccctgtacaa tccccgtaaa catacttaca actcctgaaa
     9721 tcagttaaga cattctgttc agcacaatag caggtggcaa acgcccttac cagtgaaggg
     9781 gtaagaatga ctattttttc actggagaat taataaatcc tcgctacaat agactgaatt
     9841 tcccctgctt cttctttttg ctgcccattc aggcggcttt ttagtctctc atataactac
     9901 aaataaaagg tgttcacgtg cagaagtata tcagtgaagc gcgtctgtta ttagcattag
     9961 caatcccggt gattctcgcg caaatcgccc aaactgcgat gggttttgtc gataccgtga
    10021 tggcgggcgg ctatagtgcc accgacatgg cggcggtcgc tatcggtact tctatctggc
    10081 ttccggcgat cctctttggt cacggactgc tgctggcatt aacgccggtt atcgcgcaat
    10141 taaatggttc cggtcgacgt gagcgcattg cgcatcaggt gcgacaaggt ttctggctgg
    10201 caggttttgt ttccgttctc attatgctgg tgctgtggaa tgcaggttac attatccgct
    10261 ccatggaaaa catcgatccg gctctggcgg acaaagccgt gggttatctg cgtgcgttgt
    10321 tgtggggcgc gccgggctat ctgttcttcc aggttgcccg taaccaatgt gaaggtctgg
    10381 caaaaaccaa gccgggtatg gtaatgggct ttatcggcct gctggtgaac attccggtga
    10441 actatatctt tatttatggt catttcggta tgcctgagct cggtggcgtt ggttgtggcg
    10501 tggctactgc ggcggtgtat tgggtcatgt tccttgccat ggtttcttac attaaacgcg
    10561 cccgctccat gcgcgatatt cgtaacgaaa aaggcaccgc gaaacccgat cctgcggtta
    10621 tgaaacgact gattcaactc ggtttaccga ttgcgctggc actattcttt gaagtgacac
    10681 tgtttgccgt cgtggctctg ttagtgtctc cgctcggtat tgttgatgtc gcaggacacc
    10741 agattgccct gaactttagt tcactgatgt ttgtgcttcc aatgtcgctg gcggcagcgg
    10801 taactatccg cgtaggttat cgtctgggtc agggctcaac gctggatgcg caaaccgctg
    10861 cgcggaccgg gcttatggtg ggtgtctgta tggcaaccct gacggccatt ttcacggttt
    10921 cactccggga gcaaatcgcc ctgttgtaca acgacaatcc cgaggttgta acgctggctg
    10981 cgcatttgat gttgctggcg gcggtatatc agatttctga ctcaatccag gtgattggca
    11041 gtgggatttt gcgtggttat aaagatacgc gttccatttt ctatatcacc tttacagctt
    11101 actgggtgct gggcttgcca agcggctata ttctggcact gaccgatctg gtcgttgaac
    11161 ctatggggcc agcaggcttc tggataggct ttattatcgg cctgacatcg gcagccatta
    11221 tgatgatgtt gcgtatgcgg ttcctgcaac gtctgccgtc agttatcatt ctgcaacgag
    11281 catcccgcta ataaagacaa ggcgcaacct tcacgggttg cgcctgtgtt tttacgcagg
    11341 ctggagcgtt gcgccaatcc cgtcttcgtc tggctgtaat ttcagagcgt tgcacagagt
    11401 ttgccgactg gcatctgtta tctcaacgtg tatatcaccg gtaacttccc ctttcacatt
    11461 gatgaagtca ggtgagattt ctttcgcact ggtttgcagg caaatcgctc cctctccgcg
    11521 caggcgtttc actttcagtt gcacatgcgt tgccgcacca gtgatcagcc acagttttcc
    11581 gccattcaga ttgatgttac caacaataaa agtgacaccg tcacctttta ccgtactgcc
    11641 gtcgagaatc aacacaccgc cctgctgtac agtaatcgtt gattgttgca gatctgcgcc
    11701 atagccaata atcattgaag cgccgtccag taatgcaaca ctcccggtca gttcaaccgg
    11761 tgcgcgatct tcctctacga caaaattttc gtccgcgctg gtgggtgaca acaggatcac
    11821 tgttccacct tgtattaccg cattttccag cgtaccggca tgcacttcag cccgaccacc
    11881 cacattcacg gacaggtttt gcgtcttacc ggaactgtag agctgaaggc catccgtccc
    11941 cagacgataa atggatccat tctcaacaat agtgtcagag tcttcaccac cgagattatt
    12001 catggtgcca ccagcaagca acgtatcact ggctttcccg gccagcataa aaacgccgcc
    12061 ctgattaatc tcacaattgc tggcttcccc acctggatac accaacaatt caccaccttc
    12121 atctaccacg accgctgagg ttgtcccatt aaccaacagg ccgccctctt gatcgagaat
    12181 gattttttcc gcgcgatgtc cttccagtac acgcaggtta ccgccatttt ccagcaacaa
    12241 accgcaggca taaccctgat caacgctgaa ttcaccttcg ggatggcggc cattaaccgt
    12301 agcgagcgta gagagactaa ttgcgcctcc ctcggactga acaatatctg tggcaatggc
    12361 accgtcgctg accgatagcg tgccattgtt accgtactgt gtgcatttgg cgatcccacc
    12421 ggttgccact ttcaaccagc cagcccccgt gaccacggta ttttcggctc ttccgccagc
    12481 ttcaacaatc aactcgcctt cagtaagttg cgtcgcgcca atgacctcgc cggtcttaac
    12541 aatttgcaca ttcccgtcgc tcatcaagtt tttcgcatca gatcccatga tttattcctt
    12601 tgctgcatct gtgtgccttt attgctacct aagtgtaaag gctacggagg atttatccac
    12661 gacagatttg agatggtggc aaacaactct gtttaaactc tgatacacga attattgggt
    12721 tgtatcagat gtaaatgcga tcctgaataa aaatcgccct tgcaaatcaa caaaatatag
    12781 ccaatttgct taaaagctct gcaaacggtc gaaatagcgc agaaaattac gttttgcctc
    12841 ttgccacctt cccactctgc cgctaatatt cgtccccgtt gtcacctaca acgttgcgtt
    12901 catagctcag ttggttagag caccaccttg acatggtggg ggtcgttggt tcgagtccaa
    12961 ttgaacgcac catcctgcgt ccgtagctca gttggttaga gcaccacctt gacatggtgg
    13021 gggtcggtgg ttcgagtcca ctcggacgca ccagattttc ttaatctggt cttctccttt
    13081 ttccctctgt ttcttctctg tatccaatac gttaaaagat ttacactgtc ttcgtatgcg
    13141 ttatcagaag gagaatcgct atggcaactt tgttacaact tcattttgct tttaatggcc
    13201 catttggcga cgcaatggct gagcagctta aaccgcttgc tgagtcgatt aatcaggaac
    13261 ctggttttct gtggaaggta tggacagaaa gtgaaaagaa ccacgaagcc ggtgggatct
    13321 atctttttac tgatgaaaaa agcgcccttg cctatctgga aaaacatact gcccgactta
    13381 aaaatctcgg cgttgaggaa gttgtcgcca aagttttcga tgtcaatgag ccactgagtc
    13441 aaatcaatca ggcaaaactc gcctgacaga atttaatcaa gggcggttag cgcccttttc
    13501 atccctgtct gaaatttctc aaattctaaa aatctcaacc aaacttatct gataacacta
    13561 aattcgaaag aatgcgtaca ggtaagtaac aatgaaaaaa attgctattg tgggtgccgg
    13621 gcctacgggg atctacacct tattctcgct tctacagcaa taaactccac tttctatttc
    13681 tatcttcgag caggctgacg aggccggtgt cgggatgcca tacagtgatg aggaaaactc
    13741 aaaaatgatg ctggcaaata ttgccagtat tgaaataccg ccgattaatt gtacgtatct
    13801 cgaatggcta caaaagcaag aagccagcca tctccagcgt tatggcgtta aaaaagaaac
    13861 cttgcacgat cgtcagtttt taccgcgaat tctgctgggc gaatatttcc gcgatcaatt
    13921 tttacgatta gtagaccagg cacgacagca aaaatttgca gtggctgttt atgaatcatg
    13981 ccaggttacc gatctgcaaa ttacaaatgc tggcgtcatg ctcgctacaa atcaggattt
    14041 acccagcgag acgtttgatt tagcggtgat tgccacgggt cacgtctggc ctgatgaaga
    14101 agaagcaacc agaacgtatt ttcccagtcc gtggtcaggc ctgatggaag caaaggtcga
    14161 tgcgtgtaac gtgggtatta tgggaacatc cttgagcgga ctggatgcgg caatggcagt
    14221 ggctattcag catggttcgt tcattgaaga tgataaacaa cacgtcgttt ttaaccgcga
    14281 taacgcaagt gaaaagctaa atattacgtt gatgtcgcgc acgggtattt tacccgaagc
    14341 cgatttctat tgccctattc cctacgagcc cttacacatc gtcaccgatc aggcattaaa
    14401 tgctgagatt caaaaaggtg aagagggcct tttggatcgg gtatttagat tgatagtaga
    14461 ggaaatcaag tttgctgatc cagactggag ccaacgcata gccttagaga gcctgaatgt
    14521 cgattccttt gctcaagcct ggtttgccga gcgcaaacaa cgcgacccat ttgactgggc
    14581 agaaaaaaat ctccaggaag tcgaacgcaa taaacgagaa aaacatactg ttccctggcg
    14641 ttatgtcatt ctgcgcctgc atgaagccgt acaggaaatt gttccacatc tgaatgaaca
    14701 cgaccataaa cggttcagta aaggccttgc ccgggttttt atcgataatt atgcggcaat
    14761 cccttcagag tctattcgtc ggctgctggc cttacgtgaa gcggggatca ttcatattct
    14821 cgccctcggt gaagactacg aaatggaaat taatgagtcg cgcaccgtcc tgaaaacgga
    14881 agacaacagc tactcgtttg acgtttttat tgatgcccgc ggacagc
//
LOCUS       DADMHM010000089        14901 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.090, whole genome shotgun sequence.
ACCESSION   DADMHM010000089 DADMHM010000000
VERSION     DADMHM010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14901)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14901)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14901
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.090"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..421
                     /locus_tag="JN125_002361"
     CDS             <1..421
                     /locus_tag="JN125_002361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HAY8872125.1"
                     /translation="LINNSDARKTSALLFLDGDNFKYINDTWGHATGDRVLIEIAKRL
                     AEFGGLRHKAYRLGGDEFAMVLYDVQSESEVQQICSALTQIFNLPFDLHNGHQTTMTL
                     SIGYAMTIEHASAEKLQELADHNMYQAKHQRAEKLVR"
     gene            422..700
                     /locus_tag="JN125_002362"
                     /pseudo
     CDS             422..700
                     /locus_tag="JN125_002362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708453.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
     gene            complement(777..1124)
                     /gene="rplS"
                     /locus_tag="JN125_002363"
     CDS             complement(777..1124)
                     /gene="rplS"
                     /locus_tag="JN125_002363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012768745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HAY8872126.1"
                     /translation="MSNIIKQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFE
                     GVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRE
                     RTGKAARIKERLN"
     gene            complement(1166..1933)
                     /gene="trmD"
                     /locus_tag="JN125_002364"
     CDS             complement(1166..1933)
                     /gene="trmD"
                     /locus_tag="JN125_002364"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HAY8872127.1"
                     /translation="MWIGIISLFPEMFRAITDYGVTGRAVKNGLLSIQSWSPRDFTHD
                     RHRTVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSEL
                     ATNQKLILVCGRYEGIDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVSRFIPGVL
                     GHEASATEDSFAEGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWL
                     RRPELLENLALTEEQARLLAEFKTEHAQQQHKHDGMA"
     gene            complement(1964..2512)
                     /gene="rimM"
                     /locus_tag="JN125_002365"
     CDS             complement(1964..2512)
                     /gene="rimM"
                     /locus_tag="JN125_002365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000043333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HAY8872128.1"
                     /translation="MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDY
                     QPWFIQKAGQWQQVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLE
                     EGDYYWKDLMGCQVVTTEGYDLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLD
                     GQVIKKVDLTTRSIEVDWDPGF"
     gene            complement(2531..2779)
                     /gene="rpsP"
                     /locus_tag="JN125_002366"
     CDS             complement(2531..2779)
                     /gene="rpsP"
                     /locus_tag="JN125_002366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HAY8872129.1"
                     /translation="MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIAS
                     EKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVNKAA"
     gene            complement(2916..4277)
                     /gene="ffh"
                     /locus_tag="JN125_002367"
     CDS             complement(2916..4277)
                     /gene="ffh"
                     /locus_tag="JN125_002367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HAY8872130.1"
                     /translation="MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVA
                     LPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAV
                     VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF
                     PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETL
                     FVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVG
                     EKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDF
                     LEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPE
                     IIKGSRKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMRSMKGMMPPGF
                     PGR"
     gene            4369..5235
                     /locus_tag="JN125_002368"
     CDS             4369..5235
                     /locus_tag="JN125_002368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311501.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane protein YpjD"
                     /protein_id="HAY8872131.1"
                     /translation="MQRLEQRSPDAILLLFLIAQTVDITMPVFALLALVAYSVSLALI
                     VPGLLQKNGGWRRMAIISAVIALVCHAIALEARILPDGDSGQNLSLLNVGSLVSLMIC
                     TVMTIVASRNRGWLLLPIVYAFALINLALATFMPNEYITHLEATPGMLVHIGLSLFSY
                     ATLIIAALYALQLAWIDYQLKNKKLAFNQEMPPLMSIERKMFHITQIGVVLLTLTLCT
                     GLFYMHNLFSMENIDKAVLSIVAWFVYIVLLWGHYHEGWRGRRVVWFNVAGAVILTLA
                     YFGSRIVQQLIS"
     gene            5256..6542
                     /locus_tag="JN125_002369"
     CDS             5256..6542
                     /locus_tag="JN125_002369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026171.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HAY8872132.1"
                     /translation="MEHISTTTLIIILIIMVVISAYFSGSETGMMTLNRYRLRHMAKQ
                     GNRSAKRVEKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLT
                     FVVLVFAEVLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNAITRMLMRMMGIK
                     TDIVVSGSLSKEELRTIVHESRSQISRRNQDMLLSVLDLEKMTVDDIMVPRSEIIGID
                     INDDWKSILRQLSHSPHGRIVLYRDSLDDAISMLRVREAWRLMSEKKEFTKETMLRAA
                     DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVNEYGDIQGLVTVEDILEEIVGDFTTSMS
                     PTLAEEVTPQNDGSVIIDGTANVREINKAFNWHLPEDDARTVNGVILEALEEIPVAGT
                     RVRIGEYDIDILDVQDNMIKQVKVFPVKPLRESVAE"
     gene            complement(6597..7190)
                     /gene="grpE"
                     /locus_tag="JN125_002370"
     CDS             complement(6597..7190)
                     /gene="grpE"
                     /locus_tag="JN125_002370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HAY8872133.1"
                     /translation="MSSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKI
                     ANLEAQLAEAQTRERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSL
                     DRALEVADKANPDMSAMVEGIELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMV
                     ESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKAKA"
     gene            7313..8191
                     /gene="nadK"
                     /locus_tag="JN125_002371"
     CDS             7313..8191
                     /gene="nadK"
                     /locus_tag="JN125_002371"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020239499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HAY8872134.1"
                     /translation="MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCTKGYEVIVEQQIA
                     HELQLKNVKTGTLAEIGQLADLAVVVGGDGNMLGAARTLARYDIKVIGINRGNLGFLT
                     DLDPDNAQQQLADVLEGHYISEKRFLLEAQVCQQDCQKRISTAINEVVLHPGKVAHMI
                     EFEVYIDEIFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSA
                     RPLVINSSSTIRLRFSHRRNDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKDYS
                     YFNTLSTKLGWSKKLF"
     gene            8277..9938
                     /gene="recN"
                     /locus_tag="JN125_002372"
     CDS             8277..9938
                     /gene="recN"
                     /locus_tag="JN125_002372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HAY8872135.1"
                     /translation="MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGL
                     CLGGRAEADMVRTGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGR
                     SRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMT
                     ARYQLWHQSCRDLAHHQQLGQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLA
                     NSGQLLTTSQNALALMAYGEDANLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQ
                     IAEASDELRHYCDRLDLDPNRLFELEQRISKQISLARKHHVSPEALPQYYQSLLEEQQ
                     QLDDQADSQETLALAVTKHHQQALEIARALHQQRQQYAEELAQLITDSMHALSMPHGQ
                     FTIDVKFDEHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALATQVITARK
                     METPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHYFVSKE
                     TDGAMTETHMQSLNKKARLQELARLLGGSEVTRNTLANAKELLAA"
     gene            10087..10428
                     /gene="bamE"
                     /locus_tag="JN125_002373"
     CDS             10087..10428
                     /gene="bamE"
                     /locus_tag="JN125_002373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417107.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamE"
                     /protein_id="HAY8872136.1"
                     /translation="MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVS
                     KIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHKGVTQQTLTLTFNSSGVLT
                     NIDNKPALSSN"
     gene            complement(10490..10780)
                     /locus_tag="JN125_002374"
     CDS             complement(10490..10780)
                     /locus_tag="JN125_002374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417108.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RnfH family protein"
                     /protein_id="HAY8872137.1"
                     /translation="MPGKIAVEVAYALPEKQYLQRVTLQEGATVEEAIRASGLLELRT
                     DIDLTKNKVGIYSRPAKLSDSVHDGDRVEIYRPLIADPKELRRQRAEKSANK"
     gene            complement(10770..11246)
                     /gene="ratA"
                     /locus_tag="JN125_002375"
     CDS             complement(10770..11246)
                     /gene="ratA"
                     /locus_tag="JN125_002375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system toxin RatA"
                     /protein_id="HAY8872138.1"
                     /translation="MILFVGFLLMEIVMPQISRTALVPYSAEQMYQLVNDVQSYPQFL
                     PGCTGSRILESTPGQMTAAVDVSKAGISKTFTTRNQLTSNQSILMNLVDGPFKKLIGG
                     WKFTPLSQEACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAFTVRAKEVYSAR"
     gene            11378..11860
                     /gene="smpB"
                     /locus_tag="JN125_002376"
     CDS             11378..11860
                     /gene="smpB"
                     /locus_tag="JN125_002376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HAY8872139.1"
                     /translation="MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSL
                     RAGKANISDSYVLLRDGEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYG
                     RVNREGYTVVALSLYWKNAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR
                     "
     gene            12075..12437
                     /gene="ssrA"
                     /locus_tag="JN125_002377"
     tmRNA           12075..12437
                     /gene="ssrA"
                     /locus_tag="JN125_002377"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            complement(12598..14901)
                     /locus_tag="JN125_002378"
                     /pseudo
     CDS             complement(12598..14901)
                     /locus_tag="JN125_002378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311542.2"
                     /note="frameshifted; internal stop; incomplete; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
BASE COUNT         3654 a         4002 c         3493 g         3752 t
ORIGIN      
        1 gttgataaac aattccgatg cccgaaaaac gtcggcgtta ctatttcttg atggcgataa
       61 tttcaaatat atcaatgata cctggggtca tgcgacgggc gatagggtct tgattgaaat
      121 cgcaaaacgg ttagctgaat ttggcgggct gcgacataaa gcataccgcc tgggcggcga
      181 tgaattcgct atggtgctct atgatgtaca gtcggaatct gaagtgcaac agatatgctc
      241 agcactgaca caaatcttta atctcccgtt tgatcttcat aatggccatc agaccaccat
      301 gacattaagc attggttacg cgatgaccat tgagcacgcc tctgcggaaa aattacaaga
      361 gcttgccgat cacaatatgt atcaggccaa acaccagcgt gccgaaaagc tggtgagata
      421 gcaacagatc caaaccatgg cagccaaatt ggcctcgaca gggctaacac atgcccgtat
      481 ggatggacac accgataact atggtgaaga cagttacaac gaaggcttat cattgaaacg
      541 ggcgaatgtc gtggccgatg catgggctat tggtggacaa attccacgca gcaatctcac
      601 cacacagggt ttaggaaaaa aatatcccat agccagtaac aagaccgccc agggccgcgc
      661 cgagaaccgc cgcgtcgcag tggtgattac aaccccttaa aacacgagca aacagacaaa
      721 aaaagggcca gccaattggc cagcccttct taacaggatg tcgcttaagc gaaatcttag
      781 ttaagacgct ctttgatacg agcagcctta ccagtacgct cacgcaggta gtacagttta
      841 gctttacgaa cagcaccacg acgtttgaca gaaatgctgt caactaccgg agagtgagtc
      901 tggaagacac gctcaacgcc ttcgccgttg gaaattttac gaacagtgaa tgcagagtgc
      961 agaccgcggt tacgaatagc gataaccacg ccctcgaatg cctgcagacg ttttttggaa
     1021 ccttcaacaa cccatacttt cacttccacg gtatcacccg gacggaagga aggtacgtcc
     1081 tgcttcatct gctcttgttc aagttgctta ataatgttgc tcataattta atctcttatc
     1141 ctgggtaaac tgatatctcg ggggcttacg ccatcccatc atgtttatgt tgctgttgtg
     1201 cgtgttccgt tttgaactcc gccagcaacc ttgcttgctc ttcagtcaga gccaggtttt
     1261 ccagaagttc aggtcttcta agccaggtac ggcccagcga ctgtttcaaa cgccagcgac
     1321 gtatctcggc atggttgccc gacagtaaca ctggcggaac ttccatccct tctaacacct
     1381 caggccgcgt atagtgcggg caatccagca atccttcagc aaaggaatct tccgttgccg
     1441 aggcttcatg tcccagtacc cccggaataa accgggaaac ggagtcaatc agcgtcattg
     1501 ctggtaactc accaccactg agaacgtaat cgccgattga ccattcttcg tcaatttcgg
     1561 tttggatcac gcgctcatct ataccttcgt agcgaccgca caccagaatc aatttttgat
     1621 tcgttgccaa ttcgctgacg cccgcttgat caagcttgcg tccctgtggt gacagataaa
     1681 tcacctttgc gccttcaccc gccgcggctt ttgctgcatg aatggcgtcc cgcaagggtt
     1741 gcaccatcat taacatcccc ggtccgccgc cgtaaggacg atcgtccacg gtacggtgcc
     1801 ggtcatgcgt gaagtcgcga ggactccagc tctggatgct cagcaggcca tttttaactg
     1861 cccggccagt taccccgtaa tcggtaattg cgcggaacat ttcaggaaac aggctaatta
     1921 tgccaatcca catagcgccg tcttttaccg tttatccggt ggtttaaaaa ccaggatccc
     1981 aatctacttc gattgaacga gtagtgagat cgactttctt gataacctgc ccatcgagga
     2041 acggtacgag acgttccttg ataccaaacg catctttcag gtttgcctta atgacgagaa
     2101 cgtcattaga tccggtttcc atcatatcga tgactttacc gagatcgtag ccttcagtgg
     2161 ttactacctg gcagcccatc aggtctttcc agtagtagtc accctcttca agctgaggca
     2221 actgcgatga atccacgaca atttcacaat tcgtcagcag gttcgccgca tcacgatcgt
     2281 caacgccttt cagcttgatg atcatgtcct gattgtggtg cttccagctt tccagctgga
     2341 cttgctgcca ctgacccgcc ttctggataa accagggctg atagtcaaaa atgctttcgg
     2401 cgtcttcggt ggaagaaaac actctgagcc acccacgaat accgtaagac gaacccattt
     2461 ttcccaaaac gatgggatca acaggtgctt gcgcggtgag ttgtttgctc atcatgacca
     2521 ccgtgacaga ttaagctgct ttgtttactt ctttgatcag cgcagcaacg cgatcagaaa
     2581 tagttgcgcc ctggccaacc cagtgagcga tgcgatccag atccaggcga gtgccttctt
     2641 ctttttcgct agcgattggg ttgaagaaac caacgcgctc gatgaagcga ccgttgcgtg
     2701 cattacggct gtcagcgaca acaacctggt agaacggacg ctttttagcg ccgtgacgtg
     2761 ctaaacgaat agttaccata acatcctctt gtgtgaataa aacaacctga ccccatcgag
     2821 gaacggagtc cggcgtcata ttaaaagccc gaaaatttta ctgatttctg gagaaaatgc
     2881 aatcagcagt taataactct gtcgcataag gtcatttagc gaccaggaaa tcccggcggc
     2941 atcatcccct tcatgcttct catcatcttc gccattccgc ccttcttcat tttcttcatc
     3001 atgcgctgca tgtcgtcgaa ctgtttcaga agacggttaa cgtcctgcac ctgcataccg
     3061 caaccggcag caatacggcg tttacgcgaa cctttgatga tttctggctt agcgcgctct
     3121 ttcatcgtca tcgagttgat gatggcttcc atacgcacca gcactttatc gtccatctgt
     3181 gacttgacgt tatccgggat ctgccccatg cccggcagct tgcccatcag gctggccatg
     3241 ccgcccatat ttttcatctg gcgcagctgc tcaagaaagt cgttgagatc gaagccgtca
     3301 ccttttttca gcttgctggc taatttctct gcctgcgcgc ggtcaacttt gctttcgata
     3361 tcttcgatca gcgacagtac gtcgcccatg ccgagaatac gcgacgcaat gcggtccgga
     3421 tggaacggct ccagcgcctc agttttctcg ccaacaccga ggaacttgat cggtttgcca
     3481 gtgatgtgac gaatagagag cgccgcaccg ccgcgggcat cgccgtccac tttggtcaac
     3541 actacgccgg taagcggtaa cgcttcattg aatgcttttg ccgtattggc cgcatcctga
     3601 ccggtcatgg cgtcaaccac aaacagggtt tcaaccgggt taatcgacgc atggacttgt
     3661 ttgatctcgt ccatcatcgc ttcgtcaacg tgcagacgac cagcggtatc caccagcagc
     3721 acgtcgtaga atttcagttt ggcttctttc agcgccgcgt taacgatatc taccggcttc
     3781 tgaccaacat cagaagggaa gaaatcaacg cccacctgct ctgccagcgt ctcaagctgt
     3841 ttgattgccg ccgggcgata aacgtcggca gaaaccacca gcactttctt cttgtgcttc
     3901 tcgcgcagga acttaccgag tttaccaacg ctggttgttt taccggcacc ttgcaggccc
     3961 gccatcagca cgaccgcagg cggttgcgcc gccaggttca gggtctggtt ctcttcgccc
     4021 atcgccgcaa ccagttcgtt acggacgatt ttgacgaact cctgccccgg cgtcaggctc
     4081 ttattaactt catgaccaac cgctttctct tttacgcgat tgataaactc acgcactacc
     4141 ggcagagcga catccgcctc cagcagcgcc atgcgcactt cgcgcagcgt atcttttacg
     4201 ttgtcttcag ttaggcgtcc acggccactg atattgcgca gcgtgcgcga caaacgatcg
     4261 gttaaattat caaacattgt ctctcgcctg gggtggaaac ggttggccgc aatcgcgaca
     4321 catcatcagt attttgccgc agtataacat gaaggcgtct ttgttgttat gcaacggttg
     4381 gagcagcgtt cacctgacgc tatactgctt ctctttctta ttgctcaaac tgtcgacatc
     4441 actatgcccg tttttgctct gctcgcgctt gtcgcctact ccgtcagtct tgcgctgatt
     4501 gttcccggtc tgctgcaaaa aaacggcggc tggcggcgca tggctattat ttctgcggtc
     4561 attgcgctgg tctgccacgc aatcgctctg gaagcccgca tcctacccga cggtgatagc
     4621 ggacaaaacc tcagcctgct gaacgttggt tcattggtca gtttgatgat ctgtacggta
     4681 atgaccattg tggcttctcg caatcgtggc tggttgctgc tacccattgt ctatgccttt
     4741 gcgcttatca acctagcgct ggcgaccttc atgcccaatg aatacatcac ccatctggaa
     4801 gcaacgcctg ggatgctggt gcacattggc ttatcgctct tttcctatgc cacgctaatt
     4861 atcgccgccc tgtacgcgct gcaactggcg tggattgatt accaactgaa gaacaagaag
     4921 ctggcattta accaggaaat gccgccattg atgagtatcg agcgtaaaat gttccacatc
     4981 acgcagattg gcgtggtgct gctaacgctc acgctttgca ctggcctgtt ctacatgcac
     5041 aacctattta gcatggaaaa tatcgacaag gctgtgctct ctatcgtggc gtggtttgtc
     5101 tatattgtgc tgctgtgggg acattaccat gaaggatggc gtggacgccg cgtcgtctgg
     5161 tttaacgttg cgggcgcggt aattctgaca ctggcctact tcggcagccg aattgtccag
     5221 cagttaatca gctaaaccca gaaaaggagt ttcccctgga acacatttct actactacgt
     5281 tgatcattat tctgatcatc atggtggtca tttcagccta tttttccggg tccgaaaccg
     5341 gaatgatgac cctcaaccgc tatcgtctgc gacatatggc gaaacagggt aatcgctcgg
     5401 ccaaacgcgt cgaaaaattg ctgcgtaagc cagaccgcct gataagcctg gtgttaatcg
     5461 gcaataacct ggtcaatatt cttgcctccg cgctcggcac tattgttggg atgcgtttgt
     5521 acggcgatgc gggcgtggca attgctactg gtgtgctgac ttttgtcgta ctggtatttg
     5581 ctgaggtatt gccgaaaacc attgccgcgc tgtacccgga aaaagtcgct tatccgagta
     5641 gttttctgct ggctccgctg caaattttga tgatgccgct ggtctggttg ctgaatgcta
     5701 tcacccgtat gctgatgcgc atgatgggta tcaaaaccga tatcgtggtt agcggctctt
     5761 tgagcaaaga agagttgcgc actatcgtgc acgaatcacg ctcacaaatt tcccgtcgca
     5821 atcaggatat gctgctgtcg gtgctcgatc tggaaaaaat gaccgttgat gacatcatgg
     5881 tgccgcgcag tgaaattatc ggtattgata tcaacgatga ctggaaatcg attctgcgcc
     5941 aactctccca ctcacctcac gggcgcatcg tgctctaccg tgattcgctg gacgacgcca
     6001 tcagtatgct gcgagtacgt gaagcctggc ggttgatgtc ggagaaaaaa gagttcacca
     6061 aagaaaccat gctgcgcgcc gcggacgaga tctattttgt gccggaaggt acgccgctca
     6121 gcacgcagtt agtaaagttt cagcgcaaca aaaagaaagt cggcctggtc gtcaacgagt
     6181 atggagacat tcaggggctg gtgacggttg aagatattct ggaagagatt gtcggcgatt
     6241 tcactacgtc gatgtcgcca acacttgccg aagaggtcac gccgcaaaac gacggttcgg
     6301 tgattatcga tggcaccgcc aacgtgcggg aaatcaacaa agcctttaac tggcatctac
     6361 cggaagatga tgcccgcacg gttaatggcg tcattcttga ggcactggaa gagatccctg
     6421 tcgcaggcac ccgcgtgcgt attggcgagt acgatataga tattctcgac gtacaggaca
     6481 atatgattaa gcaggtaaaa gtttttcctg tgaaaccgct gcgcgagagt gtggcggagt
     6541 aacgaaaacg gccctgcatt cgcatgcagg gccgtgaatt attacgaaaa cagaaattac
     6601 gcttttgctt tcgctacagt taccatcgcc gcacgaatcg tacgaccatt cagcgtataa
     6661 cccttctgca taatgcccag tacgttacct ggcgcaacgt catcagattc caccattgcg
     6721 atagcctgat gcacattcgg gtccagcggc acgttagttt cggcgatcac ttcaacacca
     6781 aacttacgca caacatccag catcgacttc agcgtcagct caatgccttc aaccatcgca
     6841 gacatatccg ggttagcttt atcagccact tccagcgcac gatccaggct atcaatcacc
     6901 ggcagcaatt cgttgatgaa tttctccagc gcgaatttgt gggctttttc aatatccagt
     6961 tcagtacgtc gacgcaggtt ttccatttcg gcttttacac gcaaaatgcc gtcacgttca
     7021 cgggtctggg cttcagccag ctgagcttcg agattcgcaa ttttttcatc gcgcggatcc
     7081 acctgctcag cagaagcttc tggctcaact gcctcaatct cttcgtgctg atccatgata
     7141 atttcttccg gggcttgccc ctcaggcgtt ttctgttctt tactactcat gaatttctcc
     7201 gcgttttttt cgcattcatc tcgctaactt cgcttattat ggggatcagt ttcagggttt
     7261 caagggaagc actcacattg tcatcaatct tcgcaacaag gacctcggaa aaatgaataa
     7321 tcatttcaag tgtattggca ttgtgggaca cccacggcac cccactgcac tgacaacaca
     7381 tgaaatgctc taccgctggc tgtgcacaaa aggttacgag gtcatcgttg agcaacaaat
     7441 cgctcacgaa ctgcaactga agaatgtgaa aactggcacg ctcgcggaga ttgggcaact
     7501 agctgatctc gcggtagtcg ttggtggcga cggtaatatg ctgggcgcgg cacgcacact
     7561 cgcccgttac gatattaaag ttattggaat caaccgtggc aacctgggtt tcctgactga
     7621 ccttgacccc gataacgccc agcaacagtt agccgatgtg ctggaaggcc actacatcag
     7681 cgagaaacgt tttttgctgg aagcgcaagt ctgtcagcaa gattgccaga aacgcatcag
     7741 caccgcgata aatgaagtgg tgcttcatcc aggcaaagtg gcacatatga ttgagttcga
     7801 agtgtatatc gacgagatct ttgcgttttc tcagcgatct gatggactaa ttatttcgac
     7861 gccaacaggc tccaccgcct attccctctc tgcaggcggt cctattctga ccccctctct
     7921 ggatgcgatt accctggtgc ccatgttccc gcatacgttg tcagcacgac cactggtcat
     7981 aaacagcagc agcacgatcc gtctgcgttt ttcgcatcgc cgtaacgacc tggaaatcag
     8041 ttgcgacagc cagatagcac tgccgattca ggaaggtgaa gatgtcctga ttcgtcgctg
     8101 tgattaccat ctgaatctga ttcatccgaa agattacagt tatttcaaca cattaagcac
     8161 caagctcggc tggtcaaaaa aattattcta attttacgcc agcctcttta ctgtatataa
     8221 aaccagttta tactgtacac aataacagta atggtttttc atacaggaaa acgactatgt
     8281 tggcacaact gaccatcagc aactttgcta tcgttcgtga gcttgagatt gattttcata
     8341 gcggcatgac cgtaataact ggcgagaccg gcgcgggtaa atctattgca atagatgccc
     8401 tcggtctttg tctcggtggt cgcgctgaag ccgacatggt gcgtaccggc gctgctcgcg
     8461 ctgacctgtg cgcccgtttt tctctgaaag atacgccagc ggctctgcgc tggctggaag
     8521 aaaatcagct tgaagacggg catgaatgtt tgcttcgtcg cgtgatcagc agcgatggtc
     8581 gctcccgtgg tttcatcaac ggtacagctg ttcctctgtc acaactgcgc gaactgggtc
     8641 agttgctgat tcagatccat ggtcagcacg ctcatcaatt actcaccaaa cctgagcacc
     8701 aaaaattcct gcttgatggc tatgccaatg aaacctctct actgcaggaa atgaccgcac
     8761 gttatcagtt gtggcatcaa agctgccgtg acctcgcgca tcatcaacag ttaggtcagg
     8821 aacgcgccgc ccgtgcggaa ctgctgcaat accaattaaa agaacttaac gaatttaatc
     8881 cgcagcccgg agagtttgaa caaatcgacg aagagtacaa acgtctggcg aacagcggtc
     8941 aattgctgac caccagccag aatgcattgg cattaatggc ctacggtgaa gacgcaaacc
     9001 tgcaaagtca gctttacacg gctaaacaac tggtgagcga attgattggc atggacagca
     9061 aactgtccgg cgtacttgat atgctggaag aagctaccat ccagattgct gaagccagcg
     9121 atgaactgcg ccactactgc gatcgtctgg atctcgatcc caaccgacta tttgaacttg
     9181 aacagcgcat ctcaaaacag atttcgctgg cacgtaaaca tcacgtcagc cctgaggcat
     9241 tgccacagta ttaccagtcg ctactggaag aacagcagca actggacgat caggccgact
     9301 cacaagaaac gcttgcgctg gcggtaacga aacatcatca gcaggcactg gaaatcgcgc
     9361 gcgcattaca ccaacaacgc cagcaatatg cagaagaact tgcacagctg atcaccgaca
     9421 gtatgcatgc gctctcaatg ccgcatgggc agtttacgat cgatgttaaa tttgacgagc
     9481 atcacctggg cgctgacggt gccgatcgta ttgagtttcg ggtaaccacc aacccaggtc
     9541 agccaatgca gcctattgcc aaagtcgcat ccggtggtga attgtcccgc atcgcactgg
     9601 caacccaggt catcacggcg cgtaaaatgg aaaccccggc actgattttt gatgaagtgg
     9661 atgtagggat tagcggtcca acagcggcag ttgtcggcaa actgctgcgt caactcggcg
     9721 aatcaactca ggtgatgtgt gttacccacc tgccacaagt cgcgggatgt ggtcatcaac
     9781 actattttgt cagcaaagaa accgatggtg cgatgacaga aacgcatatg caatccctga
     9841 ataaaaaagc gcggttacaa gagctggcgc gcctgcttgg tggcagtgaa gtcacacgta
     9901 atacactggc gaatgcgaaa gaactgcttg cagcgtaaac ttttttcctg cttcacggtc
     9961 agagtaaaca gcaaaacgcc gtaagaccgg aaagcaaaag gttttaaagt gatgaaaggt
    10021 ctattatcat cggcatatta cagatgagcc acgtactgct cgggcccgaa aaggaatcaa
    10081 atcactatgc gctgtaaaac gctgactgct gcagcagcag tactattgat gttgaccgca
    10141 ggctgttcca ctctggagcg agtggtttac cgtcctgaca tcaaccaggg gaactatctg
    10201 accgctaacg acgtatccaa aatacgtgtt ggcatgacgc aacaacaagt tgcgtacgca
    10261 ttgggtacac cgctgatgtc cgatccattt ggtacgaata cctggttcta tgtcttccgc
    10321 cagcaaccag gtcataaagg tgtaacgcag caaacgctga cgctgacctt taacagtagc
    10381 ggtgtgttga ccaatattga taacaaacct gcgctgagta gtaactaata ataaagttgc
    10441 tctcaaagac gttaaaaaag gtgctcaatg agcacctttt ttctgtctgt tatttattcg
    10501 ctgatttttc tgctcgttgc ctgcgaagct ctttcggatc ggcaatgaga gggcgataaa
    10561 tctccacccg atcgccatca tgcacactat cgcttagttt tgccggacgg ctgtaaatgc
    10621 cgactttgtt tttagttaaa tcgatatcgg tacgcaattc cagcaagcca ctggcgcgaa
    10681 tagcttcttc aaccgtcgcg ccctcctgca gcgtcacgcg ctgcaggtac tgcttctcag
    10741 gtagcgcata agccacctca acggcaattt tacctggcac tgtaaacctc tttcgcacga
    10801 accgtaaaag cctggaccat attagacgcc agctctttaa acacgcgacc aaaggcgagt
    10861 tcaatcaact tattggtaaa ctcaaagtcg agatgaaact cgatacgaca cgcctcctgg
    10921 ctcagcggcg taaacttcca tccaccaatc aatttcttga acggcccatc caccagattc
    10981 ataagaatac tttggttact ggtcaactgg ttgcgggtag taaacgtttt gctgatccca
    11041 gccttagaga catctaccgc cgcagtcatc tgcccaggag tggactccag aatccgactt
    11101 ccggtacaac ccggcaaaaa ctgaggataa gactgaacgt cattcactaa ctgatacatt
    11161 tgctccgcgc tgtagggtac cagtgcggtc cggctaatct gaggcataac tatttccatc
    11221 aacaaaaatc caacaaataa tatcatttat cctgctgtaa aaaaaacgct atcccggcgc
    11281 tgggtaacat cgggttcatg ctaagataga gccttgtccc ccgcaggatt gatatggggt
    11341 gttttcgatt tcagattacc gatgattcac gacgcttatg acgaagaaaa aagcacataa
    11401 acctggttca gcgaccatcg cgcttaacaa gcgcgcccgt cacgaatact ttatcgaaga
    11461 agagttcgaa gcgggacttg ccctgcaagg ctgggaagtt aaatccctgc gcgcaggaaa
    11521 agccaatatc agcgacagct acgtccttct gcgtgacgga gaggcatttc tgtttggcgc
    11581 taacatcacg ccaatggccg tagcctccac gcatgtggtg tgcgatccta cccgtacccg
    11641 caagttactt ctcaaccagc gcgaactgga ctcattgtac ggtcgcgtca atcgagaagg
    11701 ctataccgta gtggcgctct ccctgtactg gaaaaatgcc tggtgcaaag tgaaaatcgg
    11761 cgtcgccaaa ggtaaaaaac agcacgataa acgttcagat atcaaagaac gcgaatggca
    11821 ggtggataaa gcacgtatca tgaaaaacgc ccaccgttaa acctgcactc caattattga
    11881 ccagttcctc accgcgcctc cctctccggc ggcgcgaatg aacatcttat tggctatcac
    11941 atccgacaca aatgttgcca tcccattgct taatcgaata aaaatcaggc tacatgggtg
    12001 ctaaatcttt aacgataacg ccattgaggc tggtcatggc gctcataaat ctggtatact
    12061 tgccgttaca cattggggct gattctggat tcgacgggat ttgcgaaacc caaggtgcat
    12121 gccgaggggc ggttggcctc gtaaaaagcc gcaaaaaata gtcgcaaacg acgaaaacta
    12181 cgctttagca gcttaataac ctgcttagag ccctctctcc ctagcctccg ctcttaggac
    12241 ggggatcaag agaggtcaaa cccaaaagag atcgcgtgga agccctgcct ggggttgaag
    12301 cgttaaaact taatcaggct agtttgttag tggcgtgtcc gtccgcagct ggcaagcgaa
    12361 tgtaaagact gactaagcat gtagtaccga ggacgtagga atttcggacg cgggttcaac
    12421 tcccgccagc tccaccaatc atgattggac ggtataagga caacaccaat aaaaacagga
    12481 agttagcagt ctcagcagga caccgaccag acggtgaaga gacataaaag gatacgcaaa
    12541 ggagccgcgg ctcctggtga catgaaagcc cacagatgtg ggctttttcg ttgatggtca
    12601 gaacgaccag ttcacaccag ctaccccgtt ccacggggat tccacaccgg caccatggct
    12661 ataccccacc ccaagatgcc cgcttaacgt actgctgaat gaggctttaa tacctgcctg
    12721 gtatattcca cgtctgcccg acaaatcatt gacgaaatta ccgtcactat tcactttcac
    12781 ccggttatca tcgacaaatt ctttgcgcac agccgccttc agccacggct caacttccat
    12841 accgttcccc agacgcatgt tgtaactcag cgttgcaccc agttcacgat ataaactgcg
    12901 ggtatcgact gatttcgatt ccatgccatt ggataaatga tattcagggt tatcagcggt
    12961 gaacccccgt taacgatgca tacggcgtca ggttccagtt accatcggta aatcgcatcc
    13021 cggtttcaat gtgaccgccc agcccgttgc tgcgataact gccgttggcg gctccaccgc
    13081 tgccaaccgt ggagtcgcga gcttcggtac ctgctaatac caataaatta ccgccatttt
    13141 ccagcaacat attggtcgct aaattgccgg aaatggaaaa agtgccgtac tggtgagtac
    13201 cgctgattta aataccgtta gccgtgctcg tctggagagc ggcaccgctg ttctggacga
    13261 tatctgtcgc tttgccatta tcgttaactg tcagcgtacc gccttcattg atctttgttt
    13321 ttattgcctc tccgttagct gaaactgttt gtattccgcc gtcgttaatc gttgtctcat
    13381 tcgccacccc ctcgacgatt tgttcgccgc cggtgagcgt cgtgcctgtc gcagtggctt
    13441 ttgttttgac gatctcccgt ccgcccgtat tgacctgtgt tttgtcagaa gaggtgtctg
    13501 actccacggt taacacgccg ccatttgcca gcaggatatt gttcgccgca ccctgctcga
    13561 tgctgaacgc gacgccatcc gcgcgtgttc ctgtgacccg cgtcgccctg gtggttgcaa
    13621 ccaaagcgcc ctggctactc tgctgtatct ccgttgcgct gcctttctcc cgcacatcga
    13681 gtgtgccgcc gtcattaagc accgagtttt cagccagacc gccctcatta actacctgtg
    13741 aacccccatt aataatggaa ccttccgctg tcccgtttgc cataatttgt tgtaggccag
    13801 agacgatatc ggtattgatt gccttaccat aattctgaac ggtttgcgtg ccaccattga
    13861 tgtgtgtttt ctctgttgac ccaccatcaa caatttgttc accactttcg atatttgcct
    13921 cagtggctaa tccatatacc gtttgcttgc cacctttgat atttgcttta tcagaagtgg
    13981 cactggcata tattgtttgg gtgccagcac tattgagtac agtgccaaca tcttttccat
    14041 aaacatccat tttgccgttg gcattaataa tcgtatcaac tgcccgggaa ccagtgacga
    14101 ctgttaatga gccagcgttt tccagcacta catttttagc ttctgaattc ctgatgtaga
    14161 aagcatcacc ataactgttg gttcctttga taagggttcc ggaagttgtg gaagcaatta
    14221 atgcgccgcc ggattgttgc tcaacatgct tagcctcacc accgtcctga acctccagaa
    14281 cgccaccatt attaagtctg gtggtatctg ttttagcctc cttctggaca atcagcttac
    14341 cgccagcatc aacggtagta tttttcgccg aggttttagc cactaccgtc agttcgccgg
    14401 tattttccag cacaacataa ttagcctccc ctccgggtaa tagtgaagtg agagagcttg
    14461 ttgtatcctt cgatatcagt ccctgcgccc gtgttggcaa ctaaagcact gcccgtctcc
    14521 tggttaaccc catgtgctat accgccggta tagacaatca gcgagcctcc ggcgctaata
    14581 ttgctgccag ttgccgtacc atctttctca acaacctgcc ggctcccggt ggaaatattt
    14641 gtcgtgtcag ctttcccgcc gctcttgata ttttgtgttc cgctgttgat attggtaccc
    14701 gtggcaatac catgattatt aatattctgt gtaccaccat tgattatggt attggtcgcg
    14761 tttccggtaa catccattac cccgccgtta tctattcggg tcgcatcagc tttagcattc
    14821 gttaaaactg acattgttcc tttatcttta ataatcgtct tatttgccga accatatgcg
    14881 tttatgtcta aatgaccacc g
//
LOCUS       DADMHM010000090        14830 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.091, whole genome shotgun sequence.
ACCESSION   DADMHM010000090 DADMHM010000000
VERSION     DADMHM010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14830)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14830)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14830
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.091"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..309)
                     /locus_tag="JN125_002379"
     CDS             complement(<1..309)
                     /locus_tag="JN125_002379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HAY8872140.1"
                     /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA
                     RAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGA
                     I"
     gene            complement(380..2494)
                     /gene="fusA"
                     /locus_tag="JN125_002380"
     CDS             complement(380..2494)
                     /gene="fusA"
                     /locus_tag="JN125_002380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020455498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HAY8872141.1"
                     /translation="MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH
                     DGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERS
                     MRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVNQIKT
                     RLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEW
                     HQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQ
                     AMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLT
                     FFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVT
                     TGDTLCDPDAPIILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTD
                     EESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQ
                     SGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPL
                     AGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETP
                     EENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTM
                     EFLKYDEAPSNVAQAVIEARGK"
     gene            complement(2591..3061)
                     /gene="rpsG"
                     /locus_tag="JN125_002381"
     CDS             complement(2591..3061)
                     /gene="rpsG"
                     /locus_tag="JN125_002381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006714698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HAY8872142.1"
                     /translation="MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVY
                     SALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMR
                     WIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW"
     gene            complement(3158..3532)
                     /gene="rpsL"
                     /locus_tag="JN125_002382"
     CDS             complement(3158..3532)
                     /gene="rpsL"
                     /locus_tag="JN125_002382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003852912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HAY8872143.1"
                     /translation="MATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKK
                     PNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGAL
                     DCSGVKDRKQARSKYGVKRPKA"
     gene            complement(3658..3945)
                     /gene="tusB"
                     /locus_tag="JN125_002383"
     CDS             complement(3658..3945)
                     /gene="tusB"
                     /locus_tag="JN125_002383"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusB"
                     /protein_id="HAY8872144.1"
                     /translation="MLHTLHRSPWLTDFAALLRLLSEGDELLLLQDGVTAAVDGNRYL
                     ESLRNAPIKVYALNEDLIARGLTGQISNDIIPIDYTDFVRLTVKHSSQMAW"
     gene            complement(3953..4312)
                     /gene="tusC"
                     /locus_tag="JN125_002384"
     CDS             complement(3953..4312)
                     /gene="tusC"
                     /locus_tag="JN125_002384"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusC"
                     /protein_id="HAY8872145.1"
                     /translation="MKRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIADGV
                     FQLLSGQKPDAVLARDYIATFKLLGLYDIEQCWVCAASLRERGLDPQTPFVVEATPLE
                     ADALRRELANYDVILRF"
     gene            complement(4312..4698)
                     /gene="tusD"
                     /locus_tag="JN125_002385"
     CDS             complement(4312..4698)
                     /gene="tusD"
                     /locus_tag="JN125_002385"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase complex subunit TusD"
                     /protein_id="HAY8872146.1"
                     /translation="MRFAIVVTGPAYGTQQASSAFQFAQALIVEGHELSSVFFYRGGV
                     YNANQLTSPASDEFDLVRGWQQLNAQHGVALNICVAAALRRGIVDETEAGRLGLASSN
                     LQPGFTLSGLGALAEASLTCDRVVQF"
     gene            complement(4698..5420)
                     /locus_tag="JN125_002386"
     CDS             complement(4698..5420)
                     /locus_tag="JN125_002386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709120.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HAY8872147.1"
                     /translation="MSRSLLTNETSELDLLDQRPFDQTDFDILKSYEAVVDGLAMLIG
                     SHCEIVLHSLQDLKCSAIRIANGEHTGRKIGSPITDLALRMLHDMTGADSSVSKCYFT
                     RAKSGVLMKSLTIAIRNREQRVIGLLCINMNLDVPFSQIMSTFVPPETPDVGSSVNFA
                     SSVEDLVTQTLEFTIEEVNADRNVSNNAKNRQIVLNLYEKGIFDIKDAINQVADRLNI
                     SKHTVYLYIRQFKSGDFQGQDK"
     gene            complement(5587..6399)
                     /gene="fkpA"
                     /locus_tag="JN125_002387"
     CDS             complement(5587..6399)
                     /gene="fkpA"
                     /locus_tag="JN125_002387"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003827768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HAY8872148.1"
                     /translation="MKSLFKVTLLATTMAVALHAPITFAAEAAKPATTADSKAAFKND
                     DQKSAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAFADKNKLSDQEIEQTL
                     QAFEARVKSSAQAKMEKDAADNEAKGKEYREKFAKEKGVKTSSTGLVYQVVEAGKGEA
                     PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLV
                     IPPELAYGKAGVPGIPPNSTLVFDVELLDVKPAPKADAKPEADAKAADSAKK"
     gene            6620..6838
                     /locus_tag="JN125_002388"
     CDS             6620..6838
                     /locus_tag="JN125_002388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein SlyX"
                     /protein_id="HAY8872149.1"
                     /translation="MQDLSLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDH
                     LRLLTEKLKASQPSNIASQAEETPPPHY"
     gene            complement(6887..7477)
                     /gene="slyD"
                     /locus_tag="JN125_002389"
     CDS             complement(6887..7477)
                     /gene="slyD"
                     /locus_tag="JN125_002389"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HAY8872150.1"
                     /translation="MKVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISG
                     LETALEGHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQ
                     GPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHH
                     DHDHDGCCGGHGHDHGHEHGGEGCCGGKGNGGCGCH"
     gene            complement(7572..7772)
                     /locus_tag="JN125_002390"
     CDS             complement(7572..7772)
                     /locus_tag="JN125_002390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheV family putative metal-binding protein"
                     /protein_id="HAY8872151.1"
                     /translation="MAIRKRFIAGAKCPACQAQDSMAMWRENNIDIVECVKCGHQMRE
                     ADKEARDHVRKDEQVIGIFHPD"
     gene            complement(7782..9587)
                     /gene="kefB"
                     /locus_tag="JN125_002391"
     CDS             complement(7782..9587)
                     /gene="kefB"
                     /locus_tag="JN125_002391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     protein KefB"
                     /protein_id="HAY8872152.1"
                     /translation="MEGSDFLLAGVLFLFAAVAAVPLASRLGIGAVLGYLLAGIAIGP
                     WGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVGAAQVLLSAALL
                     AGLLMLTDFAWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAV
                     IPALALVPLLAGSADEHFDWMKIGMKVLAFVGMLIGGRYLLRPVFRFIAASGVREVFT
                     AATLLLVLGSALFMDALGLSMALGTFIAGVLLAESEYRHELETAIDPFKGLLLGLFFI
                     SVGMSLNLGVLYIHLLWVVISVVVLVAVKILVLYLLARLYGVRSSERMQFAGVLSQGG
                     EFAFVLFSTASSQRLFQGDQMALLLVTVTLSMMTTPLLMKLVDKWLSRQFNGPEEEDE
                     KPWVNDDKPQVIVVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGD
                     ATQVDLLRSAGAEAAESIVITCNEPEDTMKLVEICQQHFPHLHILARARGRVEAHELL
                     QAGVTQFSRETFSSALELGRKTLVTLGMHPHQAQRAQLHFRRLDMRMLRELIPMHADT
                     VQISRAREARRELEEIFQREMQQERRQLDGWDEFE"
     gene            complement(9587..10138)
                     /gene="kefG"
                     /locus_tag="JN125_002392"
     CDS             complement(9587..10138)
                     /gene="kefG"
                     /locus_tag="JN125_002392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709126.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-regulated potassium-efflux system
                     ancillary protein KefG"
                     /protein_id="HAY8872153.1"
                     /translation="MSQPAKVLLLYAHPESQDSVANRVLLKPATQLSNVTVHDLYAHY
                     PDFFIDIPREQALLREHEVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNQLAG
                     KYWRNVITTGEPESAYRYDALNRYPMSDVLRPFELAAGMCRMHWLSPIIIYWARRQSA
                     KELANHARAYGDWLANPLSPGGR"
     gene            10264..12177
                     /locus_tag="JN125_002393"
     CDS             10264..12177
                     /locus_tag="JN125_002393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAY8872154.1"
                     /translation="MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLL
                     ALLKNEISADGGSYTFPGSWQLAWVNQETPALSQAALEYVIDGDREYRQLEAQLHDAN
                     ERNDGHAIATIHGKLDAIDAWSIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNL
                     AQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIH
                     IEQQSMFEYTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQA
                     QSRIKMLERMELIAPAHVDNPFRFSFRAPESLPNPLLKMEKVSAGYGDRIILDSIKLN
                     LVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEYLRADE
                     SPIQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPN
                     LLLLDEPTNHLDLDMRQALTEALIEFEGALVVVSHDRHLLRSTTDDLYLVHDRKVEPF
                     DGDLEDYQQWLSDVQKQENQTDEAPKENANSAQARKDQKRREAELRAQTQPLRKEIAR
                     LEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQ
                     EQLEQMLLEGQSN"
     gene            12177..13199
                     /locus_tag="JN125_002394"
     CDS             12177..13199
                     /locus_tag="JN125_002394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HAY8872155.1"
                     /translation="MAQITTTDANEFSSSAEFTPMRGFSNCHLQTMLPRLFRRQVKFT
                     PYWQRLELPDGDFVDLAWSEAPAQARHKPRLVIFHGLEGSLNSPYAHGLVEAAQKRGW
                     LGVVMHFRGCSGEPNRMHRIYHSGETEDASWFLRWLQREFGHAPTAAVGYSLGGNMLA
                     CLLAKEGNDLPVDAAVIVSAPFMLEACSYHMEKGFSRVYQRYLLNLLKANAARKLAAY
                     PGTLPINLAQLKSVRRIREFDDLITARIHGYADAIDYYRQCSAMPMLNRIAKPTLIIH
                     AKDDPFMDHQVIPKPESLPSQVEYQLTEHGGHVGFIGGTLLHPQMWLESRIPDWLTTY
                     LEAKSC"
     gene            13193..13411
                     /locus_tag="JN125_002395"
     CDS             13193..13411
                     /locus_tag="JN125_002395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YheU family protein"
                     /protein_id="HAY8872156.1"
                     /translation="MLIPWQDLSPETLENLIESFVLREGTDYGEHERTLEQKVADVKR
                     QLQCGEAVLVWSELHETVNIMPRSQFRE"
     gene            13465..14334
                     /locus_tag="JN125_002396"
     CDS             13465..14334
                     /locus_tag="JN125_002396"
                     /EC_number="2.7.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribulokinase"
                     /protein_id="HAY8872157.1"
                     /translation="MSAKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNLHAAEVEGDSV
                     HRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTFIEYGQSGKGKSRKYLHTYD
                     EAVPWNQVPGTFTPWQPLPEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLE
                     WIQKLIRDTSERGHSREAVMDSVVRSMEDYINYITPQFSRTHLNFQRVPTVDTSNPFA
                     AKGIPSLDESFVVIHFRNLEGIDFPWLLAMLQGSFISHINTLVVPGGKMGLAMELIML
                     PLVQRLMEGKKIE"
     gene            complement(14389..14793)
                     /locus_tag="JN125_002397"
     CDS             complement(14389..14793)
                     /locus_tag="JN125_002397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HAY8872158.1"
                     /translation="MQARVKWVEGLTFLGESASGHQILMDGNSGDKAPSPMEMVLMAA
                     GGCSAIDVVSILQKGRQDVVDYEVKLTSERREEAPRLFTHINLHFIVTGRDLKDAAVA
                     RAVDLSAEKYCSVALMLEKAVNITHSYEVVAA"
BASE COUNT         3654 a         4049 c         3651 g         3476 t
ORIGIN      
        1 gatcgcgccg tccatctgag cagcaccggt gatcatgttt ttaacatagt cggcgtgccc
       61 cgggcagtct acgtgtgcgt agtgacgggt cggggtgtca tattcaacgt gagaagtgtt
      121 gatggtgata ccacgagctt tttcttccgg cgcgttatcg atctggtcga atgcacgagc
      181 agcaccgccg taggttttag ccagtacggt ggtgattgca gcggtcagag tagttttacc
      241 gtggtcaacg tggccgatag taccaacgtt aacgtgcggt tttgtacgtt caaatttttc
      301 tttagacacg gctatattcc ttactatagt gctctcccct tcaggagaga gcacgggact
      361 ttggtattaa cccttaggct tatttaccac gggcttcaat tacggcctga gcaacgttac
      421 tcggcgcttc atcatacttc aggaattcca tagtgtatga tgcacgacct ttggtcagag
      481 aacgcagctg agttgcgtat ccgaacattt cagacagcgg tacttcagcg tggatcttaa
      541 cgccagtaac ttcagattcc tgacctttga gcataccacg acgacggctc aagtcaccga
      601 taacgtcacc ggtgttctct tccggagttt ctacttcaac cttcatgatc ggctcaagca
      661 gaactggttt cgctttctta aagccttctt taaaggcgat agaagcagcc agtttaaacg
      721 ccagttcaga ggagtcaacg tcatggtaag aaccgaagtg cagacgaata cccatgtcta
      781 ctaccgggta gcctgccagc ggacctgctt tcagctgttc ctggatacct ttatcaacgg
      841 ccgggatgta ttcgccaggg attacaccac ctttaatgtc gttgatgaac tcgtagcctt
      901 tcgggtttga acccggctcc agcgggtaca tgtcgataac aacatgacca tactgaccac
      961 gaccaccaga ctgtttcgcg tgtttacctt caacatcggt aactttctgg cggatagttt
     1021 cacggtaagc aacctgcggt ttacctacgt tcgcttcaac gttgaattca cgcttcatac
     1081 ggtcaacgat gatgtcgagg tgcagttcgc ccatacccgc gatgattgtc tggttagatt
     1141 cttcgtcagt ccatacacgg aaagacgggt cttctttagc cagacggccc agagccagac
     1201 ccattttttc ctggtcagct ttggttttcg gttcaactgc gatggagatt accggctcag
     1261 ggaattccat acgttccaga atgatcggcg catccgggtc acacagggtg tcaccagtgg
     1321 ttacgtcttt cagaccgata gcagcagcga tgtcgcccgc gcgaacttct ttgatctctt
     1381 cacgtttgtt agcgtgcatc tgaacgatac gaccgaaacg ctcacgtgca gctttcacgg
     1441 agttcagtac ggtatcacca gagttaacca caccggagta aacacggaag aaggtcaggt
     1501 taccaacaaa cgggtcggta gcgattttga acgccagtgc agagaacggc tcgtcatcac
     1561 ttgcgtgacg ttcagccgga gtgtctttac cgtcgtccag gataccgttg atcgcaggta
     1621 cgtcaaccgg ggatggcagg taatcaatta ccgcatccag catcgcctga acacctttgt
     1681 tcttgaacgc agaaccacag gttaccagga tgatttcgtt gttcagaacg cgctgacgca
     1741 gagcaccttt gatttctgct tcagtcagtt cttcaccacc caggtatttt tccatcagct
     1801 cttcagaagc ttcagctgcg gattcgatca ggttctggtg ccattcgtta gccagttcaa
     1861 ccatgtctgc cgggatatct tcgtattcga aggttacgcc ctggtcagcg tcgttccagt
     1921 taatagcttt cattttcacc aggtcaacaa caccggtgaa atgttcttca gcaccaatcg
     1981 ccagctgcag cggaaccgga ttcgcgccca gacgggtttt gatctggtta acaactttca
     2041 ggaagttcgc acccatgcgg tccattttgt taacgaacgc aatgcgcgga actttatatt
     2101 tgtttgcctg acgccatacg gtttcagact gcggctgaac accaccaact gcgcagtaaa
     2161 ccattaccgc accatcgaga acacgcatgg aacgttctac ttcgattgtg aagtcaacgt
     2221 gccccggggt gtcgatgatg ttgatgcgat gcggctcata ctgcttagcc ataccagacc
     2281 agaatgcagt agtcgcagcg gaagtgatgg taataccacg ttcctgctcc tgctccatcc
     2341 agtccatggt tgcagcgccg tcatgaactt cacctatttt atggtttaca ccggtgtaga
     2401 acagaatacg ttcggtagta gtggttttac cggcgtcgat gtgcgcactg ataccgatgt
     2461 tacggtagcg tgcgatgggt gttgtacgag ccatttgttt cctcgtttat cttttaggcg
     2521 ttcaatttaa gtagcccaaa gcgggctgct tactggaagc gcccgcctgg tgactaaaac
     2581 tccgaaggga ttaccaacgg tagtgtgcga acgccttgtt ggcttcggcc atacggtgaa
     2641 cgtcttcacg tttcttaact gcagtacctt tgttttctgc agcatcagaa agttcgttcg
     2701 ccaggcgcag agccatggat ttatcaccgc gtttacgagc agcttcaacg atccaacgca
     2761 ttgccagagc attacgacga accggacgga cttcaactgg tacctgataa gtagaaccac
     2821 caacgcggcg agacttaact tctacagtcg ggcgcacgtt ttcgagagct acttcgaatg
     2881 cttccagttc agatttacca gagcgctgag ccagggtctc cagcgcgctg tatacgatag
     2941 attcagcagt agatttttta ccatctacca tcaggatatt tacaaattta gccagcagtt
     3001 ctgatccgaa cttcggatcc ggcagaattt tacgctgacc aatgacgcga cgacgtggca
     3061 tggaaatact ccgttgttaa ttcaggattg tccaaaactc tacgagttta gtttgacatt
     3121 taagttaaaa cgtttggcct tacttaacgg agaaccatta agccttagga cgcttcacgc
     3181 catacttgga acgagcctgc ttacggtctt taacgccgga gcagtcaagc gcaccacgta
     3241 cggtgtggta acgaacaccc gggaggtctt taacacgacc gccacggatc aggatcacgg
     3301 agtgctcctg caggttgtga ccttcaccac cgatgtagga agtcacttcg aaaccgttag
     3361 tcagacgaac acggcatact ttacgcagcg cggagttcgg ttttttagga gtggtagtat
     3421 atacacgagt acatacgcca cgtttttgcg ggcatgcttc cagcgcaggc acgttgcttt
     3481 tcgcaacttt gcgagcacgt ggtttgcgta ccagctggtt aactgttgcc attaaatagc
     3541 tcctggtttt agcttttgct tcgtaaacac gtaataaaac gtcctcacac aatatgagga
     3601 cgccgaattt tagggcgatg ccgaaaaggt gtcaagaaat atacaacgat cccgccatca
     3661 ccaggccatc tggctggagt gcttaaccgt aagtctgacg aaatcagtat agtcaatggg
     3721 aatgatgtcg ttcgaaattt gaccagtcaa accgcgggca ataaggtctt cgttcagggc
     3781 atagacctta atgggggcat tacgcagact ttcaaggtag cggttaccgt caactgcggc
     3841 agttacgcca tcttgcaata atagcagttc gtctccttca ctgagcagac gcagcagcgc
     3901 agcaaaatcc gtcagccagg gtgaacgatg taacgtgtgc agcataaacg cctcaaaacc
     3961 tcaaaataac atcgtagttg gcgagttcgc ggcgtaaggc atctgcttcg agcggcgtgg
     4021 cttcgacaac aaagggtgtc tgcggatcta acccgcgttc gcgcagtgaa gccgcacaaa
     4081 cccagcactg ttcaatgtcg tacagaccca acaatttaaa agtggcaatg taatcacgcg
     4141 ccagcactgc atcgggcttt tgtcctgaca gcagctgaaa aacgccatca gcaataaaga
     4201 agacggccag atcgtcagtt aatgcggaag ttgccagtaa agcatctaaa ccttcccgac
     4261 cagcagctgt accatgaggt gcagtagaaa aaacaaacgc aattcgtttc atcagaactg
     4321 taccaccctg tcacaggtca gcgaggcttc cgccagcgcg ccaagtccgc ttaaggtaaa
     4381 tcccggctga aggtttgacg aagccagccc cagccttcct gcttcagttt catcgacgat
     4441 accgcggcgt aacgctgccg ctacgcagat attcagcgcc acaccatgtt gcgcattcaa
     4501 ctgttgccag ccgcgcacaa ggtcaaattc gtcacttgcc ggtgaggtca attggttagc
     4561 gttatagacc cctccccgat agaaaaagac gctgcttaac tcatggcctt ctactatcag
     4621 cgcctgcgca aactgaaaag cactactcgc ctgttgcgta ccgtatgctg gcccggtcac
     4681 cacgatggca aaacgcatta cttatcttgc ccctggaaat caccgctctt gaactggcgg
     4741 atgtagagat agacagtgtg tttggagatg ttcaggcggt cagcaacctg gttgatcgca
     4801 tctttaatat cgaagatccc tttctcgtag agattcagca cgatctgacg atttttggcg
     4861 ttattagaaa cattgcgatc ggcattcact tcttcgatgg tgaactccag cgtttgggta
     4921 accagatctt caacagaaga ggcaaagttg acgcttgaac cgacatccgg ggtttctggc
     4981 ggcacaaaag tgctcataat ctgcgagaag ggaacatcaa gattcatatt gatgcacagc
     5041 agaccaatta cacgctgttc gcggttacga atcgcgatag tcagggactt cattaatacg
     5101 ccgcttttgg cgcgagtaaa gtagcattta gaaacgctgc tatccgctcc cgtcatatcg
     5161 tgcagcatac gtagcgccag gtcagtaatt ggcgaaccaa tcttccggcc tgtatgttca
     5221 ccgttagcaa tgcgaatggc tgaacatttt agatcctgca aagagtgcaa aacgatttca
     5281 cagtgggagc caataagcat cgctaacccg tccaccaccg cttcgtagga tttcagaata
     5341 tcaaaatcgg tctggtcgaa aggacgttga tccagtaaat ccaactcact ggtttcgttg
     5401 gttaaaagcg acctggacat gaaaaaaaac actccttttc aggagcctgt cgttaacttt
     5461 tcagggcagg ctcattaatg atgcgggtaa ctaaattaat acagcggagg ttccgctttc
     5521 cagcactaat tatatccggc ctgtaataaa aaaaccgccg cctggtcagg cggcggttct
     5581 taatgcttat tttttagcag aatctgcggc tttcgcatca gcttccggct ttgcatcagc
     5641 cttcggtgct ggtttcacat ccagcagctc tacgtcaaac accagggtag aattcggtgg
     5701 gatccccgga acacccgctt tgccgtaagc cagttctggt ggaataacca gtttgatctt
     5761 accgcctttc ttgatgttct tcagaccttc tgtccaaccc gggataacac cgtccagacg
     5821 gaaagaaagc ggttcaccac gggtgtaaga gttgtcgaac tctttaccgt cgatcagcgt
     5881 acctttgtag ttcactacaa cagtatcgct gtctttcggt gcttcgcctt taccggcttc
     5941 tactacctga taaaccagac cagttgaaga ggttttcaca cctttctctt tggcaaattt
     6001 ctcgcggtac tctttacctt ttgcttcgtt atcagccgcg tctttttcca tcttcgcctg
     6061 agcagaagac ttcacgcgag cttcgaatgc ttgcagagtc tgttcgatct cttggtcgga
     6121 gagtttgttc ttatcagcaa atgcatcctg aacaccagcg atcagctgat ctttatccag
     6181 tttgatgccc agtttttctt gttctttaag agagttttcc atgtaacgac ccagcgaagc
     6241 acccagtgca taagctgatt tctgatcgtc atttttgaac gctgctttgc tgtcagcagt
     6301 tgtagcaggt tttgcagctt cagcagcaaa agtgattggt gcatgcaggg caacggccat
     6361 tgtggtcgcc agcagcgtta ctttaaacag tgatttcatc catatctcca ggatcggggc
     6421 atctcacccc agggttaact attatcagaa gggtactata aagcgttgtc gaacaaatct
     6481 acatacagac acgccctatt atcatctatt ttcagactct ttttgtttaa attagtttcg
     6541 atgaccgcga aatgagtgct gtctcgggca gcaaagttaa gtagaatccg cggcaaccat
     6601 tcgacaaaag aggtgaatca tgcaggattt atcattggaa gcacgcctgg cagagctgga
     6661 gagccgactg gcttttcagg aaatcaccat tgaagaactg aacgtcacgg tgaccgctca
     6721 tgaaatggag atggcgaaac tgcgcgatca tctgcgtctg ctgaccgaga agttaaaagc
     6781 cagccagccg tcgaacatcg cgtcgcaggc tgaagaaacg ccaccgccac attattgagg
     6841 cgtaaaaaaa gcggggattc cccgcttttt tgtcaccttt tcggtattag tggcaaccac
     6901 aaccgccgtt gcctttaccg ccacagcagc cttcgccacc gtgttcatga ccgtgatcgt
     6961 ggccatgacc gccgcagcaa ccgtcgtggt cgtgatcgtg gtgatgatcg tgcgcgccgt
     7021 gaacgtgacc atgagccagt tcttcttcgg tcgcttcacg aatcgccaca acctcaacgt
     7081 tgaatttcag gttctgaccg gccagcatgt ggttaccatc aaccactacg tgatcgtctt
     7141 caaccgcagt gatttcaacc ggtaccggac cctggtcggt ttcagccagg aaacgcatac
     7201 ctacctgcag ttcatcaacg cccataaata cgtctttagg aacacgttgc accaggtttt
     7261 cgtcgtactg accgtaagcg tcgttcgcgc caacagcgac atcaaatttg tcgccaactt
     7321 catgaccttc cagcgccgtt tccaggccag agatcaggga accgtgacca tgcaggtagt
     7381 ccagcggcgc actcaccgga gactcatcaa ccaacacacc gtcttctgta cgtacctgat
     7441 aggccaggct gaccaccagg tcttttgcta ctttcatgat atctcctgag catgggaaga
     7501 atagtggcgc agattgtagc ggaattctgc agccgtgtac tcactagctt aaaaaaactc
     7561 ggcgcatatc gctagtccgg atgaaaaatc ccgatcactt gctcatcttt gcgaacgtga
     7621 tcgcgggctt ctttgtctgc ttctcgcatc tgatgtccgc acttaacgca ttcaacaata
     7681 tcaatattat tttcgcgcca catcgccatt gaatcctgtg cctgacaggc cgggcatttt
     7741 gcgcccgcaa taaaacgttt tcggattgcc atctttaccc tctactcaaa ttcatcccag
     7801 ccgtccagct ggcgtcgttc ttgttgcatt tcacgctgga aaatctcttc cagttcgcgt
     7861 cgggcttccc tggcgcgaga aatttgtaca gtatcggcat gcattgggat gagctctcgc
     7921 agcatccgca tatccaggcg gcgaaaatgc agttgcgccc gctgcgcctg atgcggatgc
     7981 atcccaagcg tgaccaaagt cttgcgcccc agctctaacg cactggagaa tgtttcacgg
     8041 gaaaactgcg tcacccctgc ctgtaataac tcatgcgctt ccacacgtcc gcgcgctcgc
     8101 gcaagaatat gcaaatgcgg aaagtgctgc tggcatattt ccaccagctt catggtgtct
     8161 tccggctcgt tacaggtaat gacgatagac tcagcggcct ctgcacccgc agaacgtaat
     8221 agatcgacct gcgtggcgtc gccgtaataa actttgtagc catatttacg catcaggtta
     8281 acggcgctga tatcccgctc cagcacggta atgcgcattt tatttgccat cagcaaacga
     8341 ccaatcacct gaccaaaacg cccgaagccc acgacaatga cctggggttt atcatcgttg
     8401 acccacggtt tttcgtcttc ttcttccggt ccgttaaact ggcgggataa ccatttatcc
     8461 accagcttca tcagcaacgg cgtggtcatc atggaaagcg tcaccgtcac cagcaacagc
     8521 gccatctggt cgccctggaa taaacgttgt gaagaagcgg tagaaaagag gacaaaggca
     8581 aactcaccac cctgactcaa cacgccagca aactgcatcc gctctgagct acgcacgcca
     8641 tacaatcgcg ccagcagata cagcacgaga attttcaccg ccaccagcac aaccacgctt
     8701 atcactaccc acaacagatg gatataaagc accccgaggt tgagcgacat gccgacagag
     8761 ataaagaaca aaccgagcag caagcctttg aagggatcga tagccgtttc cagttcatgg
     8821 cgatattcac tttccgccag cagcacgccc gcaataaatg taccgagcgc catcgacagc
     8881 cccagcgcat ccataaacaa tgcggaaccc aacaccagca gcagcgtcgc ggcggtgaac
     8941 acttcccgca cgccagaagc tgcaataaag cggaataccg gacgcagtaa atagcgccca
     9001 ccaatcagca tgccgacaaa cgccagcacc ttcatgccga tcttcatcca gtcgaaatgt
     9061 tcgtctgccg accccgccaa caacggcact aacgccagtg ctgggatcac tgccagatcc
     9121 tgaaacagca gaaccgaaaa cccgagctgg ccggattcgc tgcgattcat ccctttctca
     9181 cgcatcaatt gcaacgccat tgcagttgaa gacatcgcaa ggccaatgcc accgaccacc
     9241 gccgcctgcc aggcgaaatc cgtcagcatc aataatcccg ccagcaacgc cgcgcttaac
     9301 agcacctgtg ccgcgcctac gccaaaaatc gaacgccgca gttgccaaag tttggaggga
     9361 ttcaactcaa gaccgatgat aaacatcagg aataccacgc cgagttccga aaagtggagg
     9421 atctcatcga cgtcgctaat aaaccccagc ccccacgggc caattgcaat ccctgccagc
     9481 aaatatccca acacagcgcc aatccccagc cgcgatgcca acggcaccgc agccaccgcc
     9541 gcgaagagaa acagcactcc tgcgagtaaa aaatcggaac cttccatcag cggcctcctg
     9601 gagacagcgg atttgccagc cagtcaccgt aggctctggc gtggttcgcc agctcctttg
     9661 cgctttgccg tctcgcccag taaataatga tgggacttaa ccaatgcatc cggcacatgc
     9721 ccgccgccag ttcaaagggg cgcagcacat cgctcatcgg gtagcgattc agcgcgtcat
     9781 aacggtaagc actttccggc tcgccggtgg taatcacgtt acgccagtac tttcccgcca
     9841 gttggtttcc tcccggcccg ctggcaaaac cacgacttaa tacccggtcc agccactctt
     9901 tcagtagcgc cgggcagcta taggtataaa gaggatgctg aaagacaatc acctcgtgct
     9961 cgcgcagtaa tgcctgctca cgggggatat caataaaaaa atcgggatag tgcgcgtaaa
    10021 ggtcgtgcac ggtaacattg ctgagctgcg tggccggttt aagcagtacc cggtttgcca
    10081 ccgagtcctg agattccgga tgggcataca gcagcaaaac tttcgctggc tgagacatca
    10141 tccccctccc ggtatggttt ttgtgtatag tcgctgtttt gggctaccat tgcgcccggt
    10201 gcggcagctc gcccatacat tatcataatg ataagttaac atagtctgaa catacggcgc
    10261 cttatgattg ttttctcctc gttacaaatt cgtcgcggcg tgcgcgtcct gctggataat
    10321 gccaccgcca ccatcaaccc tgggcagaaa gtcggcctgg tgggtaaaaa cggctgtggt
    10381 aaatctaccc tgctggcatt gctgaaaaat gaaatcagcg ccgacggcgg cagctacacc
    10441 tttccgggaa gctggcaact ggcgtgggtg aatcaggaaa cgccggcgtt atcgcaagcg
    10501 gcgctggaat atgtcattga cggcgaccgt gaatatcgtc aactggaagc gcagctgcac
    10561 gacgccaacg aacgtaacga cgggcacgcc attgcgacca ttcatggcaa gctggatgct
    10621 attgacgcat ggagtattcg ctcccgtgcc gccagcctgc tgcacggcct cggtttcagc
    10681 aatgaacaac tggagcgccc ggtaagtgat ttctccggtg gctggcgtat gcgtcttaac
    10741 cttgcccagg cgctgatttg ccgttcagac ttgctgctgc tcgacgaacc gactaaccac
    10801 ctcgatctcg atgccgttat ctggctggaa aaatggttga agagctatca aggcacgctg
    10861 atcctgatct ctcacgaccg cgacttcctc gatccgatcg ttgataaaat tattcatatc
    10921 gaacaacaaa gcatgttcga gtacaccggc aactacagtt cgtttgaagt acagcgcgcc
    10981 acccgtctgg cgcagcaaca agcgatgtat gaaagccagc aggaacgcgt ggcacatctg
    11041 caaagttata tcgaccgttt ccgtgccaaa gccaccaaag cgaagcaagc ccagagccgc
    11101 attaagatgc ttgagcgtat ggagctgatt gcccccgcgc acgtcgacaa cccgttccgc
    11161 tttagcttcc gcgcgccgga aagcctgcca aatccgttac tgaagatgga aaaagtcagc
    11221 gcgggctatg gcgatcgcat tattctcgac tcgattaaac tgaacctggt gcccggctcg
    11281 cgcattggtc tgttaggccg caacggcgcg ggtaaatcga cattaatcaa actgttagcc
    11341 ggtgaacttg cgccagtcag cggtgaaatt ggtctggcga aagggatcaa gctcggctac
    11401 ttcgcccagc atcaacttga atacctgcgc gccgacgaat cacctattca acatctggca
    11461 cgtttagcgc cgcaggagct ggaacaaaaa ctgcgtgact acctcggcgg ctttggtttc
    11521 cagggcgata aagtaaccga agaaacgcgc cgcttctccg gtggggaaaa agcccgcctg
    11581 gtgctggcat taattgtctg gcagcgtccg aatctgctgc tgctcgacga accgactaac
    11641 caccttgacc tcgacatgcg tcaggcactc accgaagcat taatcgagtt tgaaggcgcg
    11701 ctggttgtcg tttcgcacga ccgtcatttg ctgcgttcca ccactgacga tctctacctg
    11761 gttcacgatc gtaaagtcga accgttcgac ggcgatctgg aagattatca acagtggttg
    11821 agcgacgtac aaaagcagga aaaccagacc gacgaagcgc caaaagagaa cgcgaacagc
    11881 gcccaggcac gtaaagatca gaagcgtcgg gaagcggagc tgcgtgcgca aacccagccg
    11941 ctgcgtaaag agattgcccg tctggaaaaa gagatggaga agctgaacgc gcaactggcg
    12001 caggcggaag agaaactcgg cgacagcgaa ctgtatgacc agagccgtaa agcggagttg
    12061 accgcctgcc tgcaacagca agccagcgcc aaatccggcc tggaagagtg cgaaatggcg
    12121 tggctggaag cccaggagca gcttgagcag atgctgctgg aaggccaaag caactgatgg
    12181 cgcagataac gacgaccgat gccaatgaat tcagcagcag tgctgaattc acccctatgc
    12241 gcggctttag caattgtcat ctacaaacta tgctgccgcg tttgtttcgt cgtcaggtga
    12301 aattcacccc gtactggcag cggctggagt tgcccgacgg cgattttgtc gatctcgcgt
    12361 ggagtgaagc ccctgcacag gctcggcata aaccgcgttt agtgatattt cacgggctgg
    12421 aaggcagtct caatagccct tacgcccacg gtctggttga ggcggcgcaa aagcgcggct
    12481 ggctgggcgt ggtgatgcat tttcgcggat gcagcggtga accaaaccgt atgcaccgca
    12541 tttaccattc gggcgaaacc gaagacgcca gttggttttt acgctggctg caacgcgaat
    12601 ttggtcatgc gccaacggct gccgtcggct attcgctcgg cggtaatatg ctggcctgtt
    12661 tgctggcaaa ggaaggcaat gatctcccgg ttgatgcggc ggtgattgtc tctgcgccgt
    12721 ttatgctgga agcctgtagc tatcatatgg aaaagggctt ttcccgcgtt tatcagcgtt
    12781 acttgctgaa cctgttaaaa gccaatgccg cgcgcaagct ggcagcctac cccggaacgc
    12841 tgccgattaa tctcgcgcag ttaaaatcgg tacgtcgcat ccgtgaattt gacgatctaa
    12901 tcaccgccag aattcacggc tacgccgacg ctatcgacta ttatcgtcag tgtagcgcca
    12961 tgccgatgct gaaccggatc gccaaaccga cgctgattat tcacgccaaa gacgatccgt
    13021 ttatggatca tcaggtgatc ccgaaaccgg aaagtctccc ctcgcaggtg gagtatcaac
    13081 tgactgaaca tggcggtcat gttggcttta ttggcggtac attacttcat ccgcaaatgt
    13141 ggctggagtc acgcattcct gactggttaa caacgtatct ggaggcgaaa tcatgttgat
    13201 tccgtggcaa gacctctccc ccgaaacgct ggaaaattta attgaaagct ttgtgttacg
    13261 tgaaggcacc gattatggtg aacatgagcg tacacttgaa cagaaagtcg ccgacgtcaa
    13321 acgccagcta cagtgcggag aagcggtgct ggtatggtcg gagctgcacg aaacggtcaa
    13381 tattatgccg cgcagtcagt ttcgcgaata acctgcaacc gtcggcggac gagataataa
    13441 tgatagctaa gtcatggagt tactatgtct gccaaacatc cggtcattgc ggtaacagga
    13501 tccagcggcg cggggaccac caccaccagc ctcgcgtttc gtaaaatatt cgcgcagtta
    13561 aatctgcatg cagctgaggt ggaaggcgac agtgttcacc gttacacccg cccggaaatg
    13621 gacatggcga tccgcaaagc gcgcgacgcc gggcggcata tcagctactt cggccccgaa
    13681 gcgaacgact tcggcctgct ggaacaaacc ttcattgaat acggtcagag cggcaaaggg
    13741 aaatctcgca aatatctgca tacctacgac gaagccgtac cgtggaatca ggtaccggga
    13801 acattcaccc cctggcaacc tttaccagaa cccactgatg tactgtttta tgaaggttta
    13861 cacggcggcg tagtcacgcc acagcataac gttgcgcagc atgtggactt actggtcggc
    13921 gtagtgccta tcgttaacct tgagtggatt caaaaactga tccgcgacac cagcgagcgc
    13981 gggcactcac gagaagcagt gatggactca gtagtgcgtt caatggaaga ctatatcaac
    14041 tacatcacac cgcagttttc ccgcacccat cttaacttcc agcgcgttcc caccgtcgac
    14101 acttcaaacc cgttcgcggc aaaaggtatc ccgtcgctgg atgaaagctt tgtggtgatc
    14161 cattttcgta atctggaagg gatcgatttc ccctggctgc tggcgatgtt gcaaggctca
    14221 ttcatttccc acatcaatac gttagtggta ccgggcggca aaatgggtct ggcaatggaa
    14281 ttaattatgc tgccgctggt gcaacgattg atggaaggaa agaaaatcga gtaactctgc
    14341 tattacgccg gataaaatac tatccggctt cacaacggga tagttaaatc acgcggcaac
    14401 cacttcatac gagtgagtaa tattcaccgc tttttccagc atcaacgcca ctgaacaata
    14461 tttctcggca gagagatcaa ccgcacgcgc aaccgctgcg tctttcaggt cgcgaccggt
    14521 gacgataaaa tgcagattaa tgtgcgtaaa caggcgtggt gcctcttcgc ggcgttcaga
    14581 ggtcaatttt acttcataat cgaccacatc ctgacgccct ttttgcagga tcgaaaccac
    14641 atcgatggca ctgcaacccc ccgccgccat caacaccatt tccatcggac ttggtgcttt
    14701 atcgcctgag ttgccgtcca ttaaaatctg atgaccagag gcggattcgc ccagaaaagt
    14761 taacccttcg acccacttca ctcgcgcttg catttttgct actccactgc gtcaattttc
    14821 ctgacagagt
//
LOCUS       DADMHM010000091        14793 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.092, whole genome shotgun sequence.
ACCESSION   DADMHM010000091 DADMHM010000000
VERSION     DADMHM010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14793)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14793)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14793
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.092"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..464
                     /locus_tag="JN125_002398"
     CDS             <1..464
                     /locus_tag="JN125_002398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416352.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="serine/threonine-protein phosphatase"
                     /protein_id="HAY8872159.1"
                     /translation="QLLEQHWVCAVRGNHEQMAMDALASQQMSLWLMNGCDWFIALAD
                     NQQKQAKTALEKCQHLPFILEVHSRTGKHVIAHADYPDDVYEWQKDVDLHQVLWSRSR
                     LGERQKGQGITGADHFWFGHTPLRHRVDIGNLHYIDTGAVFGGELTLVQLQ"
     gene            complement(465..740)
                     /locus_tag="JN125_002399"
     CDS             complement(465..740)
                     /locus_tag="JN125_002399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebW family protein"
                     /protein_id="HAY8872160.1"
                     /translation="MAGYLSWLFPRCKISPKLNGTAPHFGDEMFALVLFVCYLDGGCE
                     DIVVDVYNTEQQCLYSMSDQRIRQGGCFPIEDFIDGFWRPAQEYGDF"
     gene            complement(761..997)
                     /locus_tag="JN125_002400"
     CDS             complement(761..997)
                     /locus_tag="JN125_002400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707284.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1480 family protein"
                     /protein_id="HAY8872161.1"
                     /translation="MKTSVRIGAFEIDDGELHGESPGDRTLTILCKSDPDLCMQLDAW
                     DAETSIPALLNGEHSVLYRTRYDQQSDAWIMRLA"
     gene            complement(1115..2554)
                     /gene="rsmF"
                     /locus_tag="JN125_002401"
     CDS             complement(1115..2554)
                     /gene="rsmF"
                     /locus_tag="JN125_002401"
                     /EC_number="2.1.1.178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416349.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1407)-C(5))-methyltransferase
                     RsmF"
                     /protein_id="HAY8872162.1"
                     /translation="MAQHTVYFPDAFLTQMREAMPSTLSFDDFLAACQHPLRRSIRVN
                     TLKISVADFLQLTAPYGWTLTPIPWCEEGFWIERDNEDALPLGSTAEHLSGLFYIQEA
                     SSMLPVAALFADGNAPQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSASRVKVLHA
                     NISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESN
                     QEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETYPDAVEFLPLGD
                     LFPGANKALTEEGFLHVFPQIYDCEGFFVARLRKTQAIPALPAPKYKVGNFPFSPVKD
                     REAGQIRQAAADVGLNWDENLRLWQRDKELWLFPVGIEALIGKVRFSRLGIKLAETHN
                     KGYRWQHEAVIALATPDNVNAFELTPQEAEEWYRGRDVYPQAAPVADDVLVTFQHQPI
                     GLAKRIGSRLKNSYPRELVRDGKLFTGNA"
     gene            complement(2634..5267)
                     /gene="yebT"
                     /locus_tag="JN125_002402"
     CDS             complement(2634..5267)
                     /gene="yebT"
                     /locus_tag="JN125_002402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416348.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-binding membrane homeostasis protein YebT"
                     /protein_id="HAY8872163.1"
                     /translation="MSQETPASTTEAQIKNKRRISPFWLLPFIALMIAGWLIWDSYQD
                     RSNTVTIDFMSADGIVPGRTPVRYQGVEVGTVQDISLSDDLRKIEVKVSIKSDMKDAL
                     REETQFWLVTPKASLAGVSGLDALVGGNYIGMMPGTGKEQDHFVALDTQPKYRLDNGD
                     LMIHLQAPDLGSLNSGSLVYFRKIPVGKVYDYAINPNKQGVVIDVLIERRFTDLVKKG
                     SRFWNVSGVDANVSISGAKVKLESLAALVNGAIAFDSPEESKPAEAEDTFGLYEDLAH
                     SQRGVIIKLELPSGAGLTADSTPLMYQGLEVGQLTKLDLNPGGKVTGEMTVDPSVVTL
                     LRENTRIELRNPKLSLSDANLSALLTGKTFELVPGDGEPRKEFVVVPGEKALLHEPDV
                     LTLTLTAPESYGIDTGQPLILHGVQVGQVIDRKLTSKGVTFTVAIEPQHRELVKGDSK
                     FVVNSRVDVKVGLDGVEFLGASASEWINGGIRILPGDKGEMKASYPLYANLEKALENS
                     LSDLPTTTVSLSAETLPDVQAGSVVLYRKFEVGEVITVRPRANAFDIDLHIKPEYRNL
                     LTSNSVFWAEGGAKVQLNGSGLTVQASPLSRALKGAISFDNLSGASASQRKGDKRILY
                     ASETAARAVGGQITLHAFDAGKLAVGMPIRYLGIDIGQIQTLDLITARNEVQAKAVLY
                     PEYVQTFARGGTRFSVVTPQISAAGVEHLNTILQPYINVEPGRGNPRRDFELQEATIT
                     DSRYLDGLSIIAEAPEAGSLGIGTPVLFRGLEVGTVTGMTLGTLSDRVMIAMRISKRY
                     QHLVRNNSVFWLASGYSLDFGLTGGVVKTGTFNQFIRGGIAFATPPGTPLAPKAQEGK
                     HFLLQESEPKEWREWGTALPK"
     gene            complement(5236..6519)
                     /gene="yebS"
                     /locus_tag="JN125_002403"
     CDS             complement(5236..6519)
                     /gene="yebS"
                     /locus_tag="JN125_002403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity lipid transport subunit YebS"
                     /protein_id="HAY8872164.1"
                     /translation="MALNTPQITPTKKITVRSIGEELPRGDYQRCPQCDMLFSLPEIN
                     SHQSAYCPRCQAKIRDGRDWSLTRLAAMAFTMLLLMPFAWGEPLLHIWLLGIRIDANV
                     MQGIWQMTKQGDTITGAMVFFCVIGAPLILVSSIAYLWFGNRLGMNLRPVLLMLERLK
                     EWVMLDIYLVGIGVASIKVQDYAHIQAGVGLFSFVALVILTTVTLSHLNVEELWERYY
                     PQRPATRRDEKLRVCLGCHFTGYPDQRGRCPRCHIPLRLRRRHSLQKCWAALLASIVL
                     LLPANLLPISIIYLNGGRQEDTILSGIMSLASSNIAVAGIVFIASILVPFTKVIVMFT
                     LLLSTHFKCQQGLRTRILLLRMVTWIGRWSMLDLFVISLTMSLINRDQILAFTMGPAA
                     FYFGAAVILTILAVEWLDSRLLWDAHESGNARFDD"
     gene            6649..7146
                     /locus_tag="JN125_002404"
     CDS             6649..7146
                     /locus_tag="JN125_002404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HAY8872165.1"
                     /translation="MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDVNW
                     AGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHAFDGHIACDA
                     ASNSEIVLPLVVKNQIIGVLDIDSTVFGRFTDEDEQGLRQLVAQLEKVLATTDYKKFF
                     ASVAG"
     gene            7243..7941
                     /gene="proQ"
                     /locus_tag="JN125_002405"
     CDS             7243..7941
                     /gene="proQ"
                     /locus_tag="JN125_002405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707288.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone ProQ"
                     /protein_id="HAY8872166.1"
                     /translation="MENQPKLNSSKEVIAFLAERFPHCFSAEGEARPLKIGIFQDLVD
                     RVAGEMNLSKTQLRSALRLYTSSWRYLYGVKPGATRVDLDGNPCGELDEQHVEHARKQ
                     LEEAKARVQAQRAEQQAKKREAAAAAGEKEDAPRRERKPRPTTPRRKEGAERKPRAQK
                     PVEKAPKTVKAPREEQHTPVSDISALTVGQALKVKAGQNAMDATVLEITKDGVRVQLN
                     SGMSLIVRAEHLVF"
     gene            7961..10009
                     /gene="prc"
                     /locus_tag="JN125_002406"
     CDS             7961..10009
                     /gene="prc"
                     /locus_tag="JN125_002406"
                     /EC_number="3.4.21.102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy terminal-processing peptidase"
                     /protein_id="HAY8872167.1"
                     /translation="MNMFFRLTALAGLLAIAGQTFAVEDITRADQIPVLKEETQHATV
                     SERVTSRFTRSHYRQFDLDQAFSAKIFDRYLNLLDYSHNVLLASDVEQFAKKKTELGD
                     ELRSGKLDVFYDLYNLAQKRRFERYQYALSVLEKPMDFTGNDTYNLDRSKAPWPKNEA
                     ELNALWDSKVKFDELSLKLAGKTDKEIRETLTRRYKFAIRRLAQTNSEDVFSLAMTAF
                     AREIDPHTNYLSPRNTEQFNTEMSLSLEGIGAVLQMDDDYTVINSMVAGGPAAKSKAI
                     SVGDKIVGVGQTGKPMVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRTVTLT
                     RERIRLEDRAVKMSVKTVGKEKVGVLDIPGFYVGLTDDVKVQLQKLEKQNVSSVIIDL
                     RSNGGGALTEAVSLSGLFIPAGPIVQVRDNNGKVREDSDTDGQVFYKGPLVVLVDRFS
                     ASASEIFAAAMQDYGRALVVGEPTFGKGTVQQYRSLNRIYDQMLRPEWPALGSVQYTI
                     QKFYRVNGGSTQRKGVTPDIIMPTGNEETETGEKFEDNALPWDSIDAATYVKSGDLTA
                     FGPELLKEHNARIAKDPEFQNIMKDIARFNAMKDKRNIVSLNYAVREKENNEDDATRL
                     ARLNERFKREGKPELKKLDDLPKDYQEPDPYLDETVNIALDLAKLEKARPAEQPAPVK
                     "
     gene            10201..11082
                     /gene="htpX"
                     /locus_tag="JN125_002407"
     CDS             10201..11082
                     /gene="htpX"
                     /locus_tag="JN125_002407"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014229823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease HtpX"
                     /protein_id="HAY8872168.1"
                     /translation="MMRIALFLLTNLAVMVVFGLVLSLTGIQSSSVQGLMIMALLFGF
                     GGSFVSLLMSKWMALRSVGGEVIEQPRNERERWLVNTVATQARQAGIAMPQVAIYHAP
                     DINAFATGARRDASLVAVSTGLLQNMSPDEAEAVIAHEISHIANGDMVTMTLIQGVVN
                     TFVIFISRILAQLAAGFMGGNRDEGEESNGNPLIYFAVATVLELVFGILASIITMWFS
                     RHREFHADAGSAKLVGREKMIAALQRLKTSYEPQEATSMMAFCINGKSKSLSELFMTH
                     PPLDKRIEALRTGEYLK"
     gene            complement(11128..12501)
                     /locus_tag="JN125_002408"
     CDS             complement(11128..12501)
                     /locus_tag="JN125_002408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416342.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8872169.1"
                     /translation="MPKVQADGLPLPQRYGAILTIVIGISMAVLDGAIANVALPTIAT
                     DLHATPASSIWVVNAYQIAIVISLLSFSFLGDMFGYRRIYKCGLVVFLLSSLFCALSD
                     SLQMLTLARVIQGFGGAALMSVNTALIRLIYPQRFLGRGMGINSFIVAVSSAAGPTIA
                     AAILSIASWKWLFLINVPLGIIALLLAMRFLPPNGSRASKPRFDLPSAVMNALTFGLL
                     ITALSGFAQGQSLTLIAAELVVMVVVGIFFIRRQLSLPVPLLPVDLLRIPLFSLSICT
                     SVCSFCAQMLAMVSLPFYLQTVLGRSEVETGLLLTPWPLATMVMAPLAGYLIERVHAG
                     LLGALGLFIMAAGLFSLVLLPASPADINIIWPMILCGAGFGLFQSPNNHTIITSAPRE
                     RSGGASGMLGTARLLGQSSGAALVALMLNQFGDNGTHVSLMAAAILAVIAACVSGLRI
                     TQPRSRA"
     gene            12678..13469
                     /gene="kdgR"
                     /locus_tag="JN125_002409"
     CDS             12678..13469
                     /gene="kdgR"
                     /locus_tag="JN125_002409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012132042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator KdgR"
                     /protein_id="HAY8872170.1"
                     /translation="MANADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMS
                     KSTVYRFLQTMKTLGYVAQEGESEKYSLTLKLFELGARALQNVDLIRSADIQMREISR
                     LTKETIHLGALDEDSIVYIHKIDSMYNLRMYSRIGRRNPLYSTAIGKVLLAWRDRDEV
                     KQILEGVEYKRSTERTITSTEALLPVLDQVREQGYGEDNEEQEEGLRCIAVPVFDRFG
                     VVIAGLSISFPTLRFSEERLQEYVAMLHTAARKISAQMGYHDYPF"
     gene            complement(13612..13851)
                     /locus_tag="JN125_002410"
     CDS             complement(13612..13851)
                     /locus_tag="JN125_002410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872171.1"
                     /translation="MRFIIRTVMLIALVWIGLLLSGYGVLIGSKENAAGLGLQCTYLT
                     ARGTSTVQYLHTKNGFLGITDCPLLRKSNIVADNG"
     gene            14010..14153
                     /gene="mgrB"
                     /locus_tag="JN125_002411"
     CDS             14010..14153
                     /gene="mgrB"
                     /locus_tag="JN125_002411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoP/PhoQ regulator MgrB"
                     /protein_id="HAY8872172.1"
                     /translation="MKKFRWVVLVVVVLACLLLWAQVFNMMCDQDVQFFSGICAINQF
                     IPW"
     gene            14228..14515
                     /locus_tag="JN125_002412"
     CDS             14228..14515
                     /locus_tag="JN125_002412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872173.1"
                     /translation="MNEVVNSGVMNIASLVVSVVVLLIGLILWFFINRASSRTNEQIE
                     LLEALLDQQKRQNALLRRLCEANEPEKADKKTIESQKSVDDEDIIRLVAER"
BASE COUNT         3878 a         3595 c         3796 g         3524 t
ORIGIN      
        1 tgcagttact ggaacaacat tgggtttgtg cggtaagagg caatcatgaa cagatggcga
       61 tggatgcgct ggcatcccag cagatgtctt tgtggttgat gaatggctgc gactggttta
      121 ttgcgctggc agataatcaa cagaaacaag cgaaaacggc gctggaaaaa tgtcagcatt
      181 tgccctttat tcttgaagta cacagtcgca ccggcaagca tgttattgct catgcggatt
      241 atccagatga tgtttatgaa tggcaaaagg acgttgattt gcatcaggtc ttgtggagcc
      301 gctcgcgatt aggtgaacgc caaaaagggc agggaattac aggtgctgat catttctggt
      361 ttggtcatac accgttgcga catcgcgtgg atattggcaa cctgcattat attgataccg
      421 gtgctgtctt tgggggcgaa ctgactcttg tgcaattgca atgattaaaa atcaccgtac
      481 tcctgtgcag gtcgccagaa accatctata aaatcctcaa tcggaaaaca accgccctgg
      541 cggatccgtt gatcgctcat agaataaaga cactgctgtt ccgtgttgta gacatccaca
      601 acaatatctt cacaaccgcc atccaggtag caaacaaaaa gtaccagcgc gaacatttca
      661 tccccgaagt gtggtgccgt accgttaagt ttaggagaga ttttacaacg ggggaataac
      721 caggacaaat aacccgccat gccgacgggt tctttttgga tcaggcaaga cgcataatcc
      781 aggcatcaga ttgttgatcg taacgggtac ggtaaaggac agagtgttcg ccatttagca
      841 gggcagggat actggtttca gcatcccagg catcgagttg catacataaa tcggggtcag
      901 atttacaaag aatggttaac gttcgatcac ccggcgattc accgtgtaat tcgccgtcgt
      961 cgatttcaaa agcgcctatg cgcacactgg ttttcatctt cgtgctctcc atttagctgc
     1021 cggttgtggt acgaccagtc cgatcgcacc atttttcagc ctagttgagg cagccgaatg
     1081 tgccagtcaa aaagtgcgct ttttttgtgc gctgtcaggc gttaccggta aaaagtttcc
     1141 catcgcgcac cagttcacgc ggatagctgt ttttcaatcg cgaaccaatc cgtttggcta
     1201 aaccaatcgg ttgatgctgg aaagtaacca acacgtcatc cgccactggc gcggcttgcg
     1261 ggtaaacatc gcgcccgcga taccactcct ccgcttcctg cggtgtcagt tcaaaagcgt
     1321 tcacattgtc gggggtggca agggcaataa ctgcttcatg ctgccagcga taacctttgt
     1381 tgtgcgtttc ggcaagttta atccccaagc gagaaaatcg gactttaccg atcagggctt
     1441 caatgcccac cgggaacaac cacagttctt tgtcacgctg ccagaggcgc aggttttcat
     1501 cccagtttaa gccaacatct gcagccgcct ggcgaatttg tccagcttcg cgatctttca
     1561 ccgggctgaa cggaaaatta ccgactttgt atttgggggc gggtaaggcg ggaatcgcct
     1621 gagttttacg cagacgagca acgaagaagc cttcgcagtc gtaaatttgt gggaaaacat
     1681 gcaaaaagcc ttcttcggtc agcgctttgt ttgcaccagg gaagagatcg ccaagtggta
     1741 aaaactctac tgcgtcgggg taagtctctt tcagccacag gcaaacggct tcgttttctt
     1801 cctggtttaa ggtacaggtc gagtaaacca gcgtaccacc aggacgtaat gcatgaaagg
     1861 cgctgtcgat aagctcccgt tgtgtagctg cgatttcctg attgctttct ggtgaccagt
     1921 tttttagcgc atcgggatct ttacgcacca cgccttcgcc ggagcaggga gcgtccagca
     1981 aaatggcatc aaacatttct ggcactgccg caccaaacac gcggccatca aaatgtgtga
     2041 gcgcaacatt actgatgcca cagcggctga tattggcatg taacactttt acccgactgg
     2101 cggaaaactc attggcaagg attgcccctt cgttattcat ccgcgcggca atttgcgtcg
     2161 tttttgagcc tggcgcagca gcgacatcca tcacccgctg tggtgcatta ccgtcagcaa
     2221 acaaggcggc gacgggcaac attgaactgg cttcctgaat ataaaacagg ccacttaaat
     2281 gctcggcggt actacccaat ggcaatgcat cttcattgtc gcgttcaatc cagaaacctt
     2341 cttcacacca cggaattggc gtaagcgtcc agccataagg agcggttaat tgcaggaaat
     2401 cagcaacgga gattttcagc gtattaacgc gaatgctgcg gcgcaacggg tgctgacagg
     2461 cggcaagaaa atcatcaaat gagagcgtcg aaggcatagc ttcgcgcatt tgtgtcagaa
     2521 acgcgtccgg gaaataaacg gtgtgttggg ccacgagcat gtaccactgg caaaaaaaca
     2581 ggcgcgcagt ttagcataaa cgctccggcg caggcacgcc ggagcagtgg gcattatttg
     2641 ggaagcgcag ttccccattc acgccactct ttcggttcac tttcctgcaa caggaagtgt
     2701 ttgccttcct gggctttcgg tgccagtggc gtacccggag gcgtggcgaa ggcgatgccg
     2761 ccacggataa actggttaaa ggtgccggtt ttcactacgc cgcccgtcag accaaagtcc
     2821 agactgtaac ccgatgccaa ccagaagacg gaattgttac gcaccaggtg ttgatagcgt
     2881 ttactgatgc gcatcgcaat catcacgcga tctgacaatg tccccagcgt cattccggta
     2941 accgtaccta cttccagacc acggaacagc acaggcgtac caatacctaa cgaaccggct
     3001 tccggtgctt cggcaataat gcttaagcca tccaggtaac gcgaatcagt aatagtagct
     3061 tcttgcaact caaagtcacg gcgaggatta ccccgacctg gttcgacatt gatatacggc
     3121 tggaggatag tatttagatg ctcaacgcct gcggctgaaa tttgcggtgt gaccaccgag
     3181 aagcgcgtac cgccgcgggc gaaggtctgg acatactccg gatagagcac cgcctttgcc
     3241 tgtacttcat tgcgcgcggt aatcagatcc agcgtctgga tttgcccgat atcaataccg
     3301 agatagcgaa ttggcatccc gaccgccagt tttccggcat cgaaagcgtg aagcgtaatc
     3361 tgcccaccaa ccgcacgggc cgctgtttcg gaagcataca gaattcgttt gtcgccttta
     3421 cgctgactgg cgctggcacc gctgaggtta tcgaagctaa tggctccctt taatgctctg
     3481 gagagcgggg atgcctgtac ggtcaggcca ctaccattca gctgaacttt cgccccgcct
     3541 tctgcccaga acacgctatt gctggtcaga aggttgcgat actccggctt aatatgcaga
     3601 tcgatatcaa acgcgttagc tcgcggacgc acggtaatca cttcaccaac ttcaaattta
     3661 cggtacagca ctaccgatcc tgcctgcaca tccggcagcg tctctgcact caaactcacg
     3721 gttgtggtgg gtaaatcgct aaggctgttc tccagcgctt tttccagatt ggcatacagt
     3781 ggatagctgg ctttcatctc acctttatcg cctggcagaa tacgtatccc gccgttaatc
     3841 cattctgagg cgctggcacc aagaaactca acgccatcca gccccacctt cacgtcgaca
     3901 cggctgttga cgacaaattt gctatcgcct tttaccagtt cgcgatgctg aggctcgatg
     3961 gcgacggtaa aggtaacgcc tttgctggtg agtttacgat caataacctg gcctacctgc
     4021 acgccgtgaa gaatgagcgg ctgacccgta tcaataccgt aactttccgg cgcggtcagg
     4081 gtcagcgtca gaacatcagg ttcatgcagc agtgcttttt cgcctggcac aacaacgaac
     4141 tctttgcgtg gctcgccatc gccgggtacc aactcgaagg ttttgccagt cagcagggcg
     4201 ctgagattgg catcgctaag ggataatttc ggattacgta attcgatgcg ggtattttca
     4261 cgaagcaggg taacgacgct gggatcaact gtcatttccc cagtgacttt accaccagga
     4321 tttaaatcca gtttagttag ctgtccgact tccagtccct gatacattaa tggcgtcgag
     4381 tcggcggtta atccggcccc actcggcagt tccagtttga ttattacgcc acgctggcta
     4441 tgggcgaggt cttcatacag accaaaggta tcttccgcct cggcaggttt cgactcttct
     4501 ggtgaatcga aggcaatcgc accgttaacc agtgccgcca ggctttccag tttcaccttc
     4561 gcgccactga tactgacatt ggcatcaacg ccggaaacgt tccagaaacg gctacctttt
     4621 ttcaccagat cggtaaaacg ccgctcgatc aggacatcaa tcaccacgcc ttgtttgttg
     4681 ggattgatgg catagtcgta gacttttccc accgggatct tgcggaaata gaccaatgaa
     4741 ccgctgttca gcgaaccgag atcgggggct tgcaggtgga tcatcagatc gccattgtcc
     4801 agccgatatt tcggttgggt atcgagtgcg acaaagtgat cctgctcttt acctgtaccc
     4861 ggcatcatgc cgatatagtt cccaccgacg agggcgtcca gcccggagac acctgccaac
     4921 gatgcttttg gcgtcaccag ccagaattga gtctcttcgc gcagcgcatc tttcatatcg
     4981 gacttgatgc tgaccttgac ttcaatctta cgaagatcgt cgctgaggct gatatcctgc
     5041 actgttccga cttcaacgcc ctgataacga acaggcgtac ggcccgggac aataccatcc
     5101 gccgacataa agtcgatggt gacggtatta cttcggtcct gataactgtc ccaaatcagc
     5161 caaccggcaa tcattagcgc gatgaaaggc agcagccaga aaggtgagat acggcgttta
     5221 tttttaatct gcgcttcagt cgtcgaagcg ggcgtttcct gactcatgtg catcccaaag
     5281 taagcggctg tccagccatt ccacagcaag aatagtcaaa attacggctg cgccaaaata
     5341 aaacgcagcc ggtcccatag taaaagcgag gatctgatcg cgattaatca gcgacatggt
     5401 taaagatatg acaaacaggt cgagcatcga ccagcgtcca atccaggtca ccatccgcag
     5461 taacagaatg cgtgtgcgta aaccttgctg gcatttaaaa tgagtgctca acagtaaagt
     5521 gaacatgacg atcactttag taaacggtac cagaatactg gcgataaaca cgattccggc
     5581 gaccgcaatg ttgctacttg ccagcgacat aatcccggaa agaatcgtat cttcctgccg
     5641 gccaccattc agataaatga tagaaatagg caataggttg gctggtaaca acaaaacgat
     5701 tgacgctaac agcgccgccc agcatttttg caaactatga cgacgacgca ggcgtagcgg
     5761 gatatggcaa cgcgggcagc gaccacgctg atcaggatag ccggtaaaat ggcacccaag
     5821 acagacacga agtttctcgt ccctacgcgt agcggggcgc tgcggataat atcgctccca
     5881 cagctcctca acattaagat gtgacaacgt caccgtcgtt aaaatcacca acgccacaaa
     5941 agagaacaag ccgacacccg cctggatatg ggcataatcc tgtaccttta tagaagcaac
     6001 gccaatgccg accaggtaga tatccagcat tacccactct ttaagacgct caagcatcag
     6061 cagtaccgga cgtaaattca ttcccagtcg gttaccaaac cataaatatg ctatggagga
     6121 caccagaatg aggggggcac caataacgca gaaaaagacc atcgcccccg ttatcgtatc
     6181 gccctgtttg gtcatttgcc agatgccttg catgacgttt gcgtcgatac gaatacctaa
     6241 cagccagata tgcaacagcg gttcgcccca ggcaaacggc atcagcaaca gcatggtgaa
     6301 agccattgcc gccaggcgcg ttagcgacca gtcgcgcccg tcgcgaattt ttgcctgaca
     6361 gcgcggacaa taggcactct gatgagaatt tatctcgggc aggctaaaca gcatgtcaca
     6421 ttgcgggcaa cgttggtaat caccacgcgg cagttcctcg ccgattgacc tcactgttat
     6481 cttttttgtc ggcgtaattt gtggtgtgtt aagagccatg acgtgccaaa tgtaataaga
     6541 attaacatta atcttaaccc atgatgggaa tgatcttgag cattaacgca tttaatgctt
     6601 attttaatag gctggcagtt ccaggtaaga caaacaagtg attatataat gaacaaaaca
     6661 gaattttacg cggatttaaa tcgcgacttt aacgcgctga tggcgggaga aaccagtttt
     6721 ctggcaacgc ttgcgaacac cagtgcgttg ttatacgagc gtctcactga cgtaaactgg
     6781 gcaggttttt atttgcttga ggacgataca ctggtactcg gaccatttca gggcaaaatt
     6841 gcctgtgtcc ggatacccgt cgggcgcggg gtgtgcggca ctgcggttgc ccgcaatcaa
     6901 gtgcagcgta tcgaggatgt tcacgcgttt gacgggcata ttgcctgtga tgcggcgagt
     6961 aattctgaaa ttgttctgcc gctggtggtg aaaaatcaga ttattggtgt tcttgacatc
     7021 gatagtaccg tcttcggtcg ctttacagac gaggacgagc aaggcttacg tcagcttgtg
     7081 gcacagcttg aaaaagtgct tgcaacgacg gattacaaaa aattctttgc gagcgtcgca
     7141 ggataatcaa cggataacgt agcatttact ggtagcgtca ttataatgac gcctgttcat
     7201 gcctgcgctt gttggctacg tccgttgtaa tcaggaaatt tcatggaaaa tcaacctaag
     7261 ttgaatagca gtaaagaagt aatcgcgttt ctggccgaac gttttcccca ctgtttcagt
     7321 gcggaaggtg aagcgcgtcc gctgaaaatc ggtatttttc aggatttggt cgatcgtgtt
     7381 gccggggaaa tgaacctgag caaaacgcaa ttacgatccg ctttacgtct ctacacttcg
     7441 agctggcgtt atctttacgg tgttaaaccc ggcgcaacgc gtgtcgatct tgacggcaac
     7501 ccatgcggtg agctggacga gcaacatgta gagcatgctc gcaagcagct tgaagaagcg
     7561 aaagcgcgtg ttcaggcaca gcgtgctgaa cagcaagcga aaaaacgcga agctgccgca
     7621 gctgctggtg agaaagaaga cgcaccgcgc cgcgaacgca agccacgtcc gaccacgcca
     7681 cgccgcaaag aaggcgctga acgtaaacct cgtgcgcaaa agccggtaga gaaagcgcca
     7741 aaaacagtaa aagcacctcg cgaagaacag cacaccccgg tttctgacat ttcagctctg
     7801 actgtcggac aagctctgaa ggtgaaagcg ggtcaaaacg cgatggatgc caccgtatta
     7861 gaaatcacca aagacggcgt ccgcgtccag ctgaattcgg gtatgtcttt gattgtgcgc
     7921 gcagaacacc tggtgttctg aaacggaggc cgggccaggc atgaacatgt tttttaggct
     7981 taccgcgtta gctggcctgc ttgcaatagc aggccagacc ttcgctgtag aagatatcac
     8041 gcgtgctgat caaattccgg tattaaagga agagacgcag catgcgacgg taagtgagcg
     8101 cgtaacgtcg cgcttcaccc gttctcatta tcgccagttc gacctcgatc aggcattttc
     8161 ggccaaaatc tttgaccgct acctgaatct gctcgattac agccacaacg tgctgctggc
     8221 aagcgatgtt gaacagttcg cgaaaaagaa aaccgagtta ggcgatgaac tgcgttcagg
     8281 caaactcgac gttttctacg atctctacaa tctggcgcaa aagcgccgtt ttgagcgtta
     8341 ccagtacgct ttgtcggtac tggaaaagcc gatggatttc accggcaacg acacttataa
     8401 ccttgaccgc agcaaagcgc cctggccgaa aaacgaggct gagttgaacg cgctgtggga
     8461 cagtaaagtc aaattcgacg agttaagcct gaagctggca ggaaaaacgg ataaagaaat
     8521 tcgtgaaacc ctgacacgcc gctacaaatt tgccattcgt cgtctggcgc aaaccaacag
     8581 cgaagatgtt ttctcgctgg caatgacggc gtttgcgcgt gaaatcgacc cgcataccaa
     8641 ctatctttcc ccgcgtaata ccgaacagtt caacactgaa atgagtttgt cgctggaagg
     8701 tattggcgca gtgctgcaaa tggatgatga ctacaccgtt atcaattcga tggtggcagg
     8761 tggtccggca gcgaagagta aagctatcag cgttggtgac aaaattgtcg gtgttggtca
     8821 aacaggcaag ccgatggttg acgtgattgg ctggcgtctt gatgatgtgg ttgccttaat
     8881 taaagggccg aagggcagta aagttcgtct ggaaatttta cctgctggta aagggaccaa
     8941 gacccgcact gtaacattga cccgtgaacg tattcgtctc gaagaccgcg cggttaaaat
     9001 gtcggtgaag accgtcggta aagagaaagt cggcgtgctg gatattccgg gcttctatgt
     9061 gggtttgaca gacgatgtca aagttcaact gcagaaactg gaaaaacaga atgtcagcag
     9121 tgtgatcatc gacctgcgta gcaatggcgg tggggcgttg accgaagcgg tatcgctctc
     9181 aggtctgttt attcctgcgg gtcccattgt tcaggtccgc gataacaacg gcaaggttcg
     9241 tgaagacagc gataccgacg ggcaggtgtt ctataaaggc ccgctggtgg tactggttga
     9301 ccgtttcagt gcttcggctt cagaaatctt tgccgcggca atgcaggatt acggtcgtgc
     9361 gctggttgtg ggtgaaccga cgtttggtaa aggcaccgtt cagcaatacc gttcattgaa
     9421 ccgtatttac gatcagatgt tacgtcctga atggccagcg ctgggttctg tgcagtacac
     9481 gatccagaaa ttctatcgcg ttaacggcgg cagtacgcaa cgtaaaggcg taacgccaga
     9541 catcatcatg ccgacgggta atgaagaaac ggaaacgggt gagaaattcg aagataacgc
     9601 gctgccgtgg gatagcattg atgccgcgac ttatgtgaaa tcaggcgatt taacggcctt
     9661 tgggccggag ctgctgaagg aacataatgc gcgcatcgcg aaagatcctg agttccagaa
     9721 catcatgaag gatatcgcgc gcttcaacgc tatgaaggac aagcgcaata tcgtttctct
     9781 gaactacgct gtgcgtgaga aagagaataa tgaagatgat gcgacgcgtc tggcgcgttt
     9841 gaacgaacgc tttaaacgcg aaggtaaacc ggagttgaag aagctggatg atctaccgaa
     9901 agattaccaa gagccggatc cttatctgga tgagacggtg aatatcgcac tcgatctggc
     9961 gaagcttgaa aaagccagac ccgcggaaca acccgctccc gtcaagtaat atcaatcagg
    10021 cacaagaaat tgtgcctgat tttttaacag cggcaagatg ccgtaaatca gatgctacaa
    10081 aatgtaaagt tgtgtctttc tggtgactta cgcactatcc agacttgaaa atagtcgcgt
    10141 aacccatacg atgtgggtat cgcatattgc gttttgttaa actgaggtaa aaagaaaatt
    10201 atgatgcgaa tcgcgctctt cctgctaacg aacctggccg taatggtcgt tttcgggctg
    10261 gtactgagcc tgacagggat acagtcgagc agcgttcagg ggctgatgat catggccttg
    10321 ctgttcggtt ttggtggttc cttcgtttcg cttctgatgt ccaaatggat ggcattacga
    10381 tctgttggcg gggaagtgat cgagcaaccg cgtaacgaaa gggaacgttg gctggtcaat
    10441 actgtagcaa cccaggctcg tcaggcaggg atcgctatgc cgcaagtggc tatctaccat
    10501 gcgccggaca tcaacgcttt tgcaaccggt gcgcgccgtg atgcctctct ggttgctgtc
    10561 agcaccggtt tgctgcagaa catgagcccg gatgaagccg aggcggtaat tgctcacgaa
    10621 atcagccaca tcgccaatgg tgatatggtt accatgacgc tgattcaggg cgtggtgaac
    10681 accttcgtta tctttatttc ccgtattctg gcgcagcttg ccgcgggttt tatgggcgga
    10741 aaccgtgatg aaggtgaaga gagcaacggc aacccgctga tctactttgc ggttgcaacg
    10801 gttctggaac tggtgtttgg tattctggcg agcattatca ccatgtggtt ctcgcgtcat
    10861 cgtgaattcc atgctgatgc cggttcggca aaactggttg gtcgcgagaa aatgattgcc
    10921 gcgctgcagc gcctgaaaac cagctatgaa ccgcaagaag caaccagcat gatggctttc
    10981 tgcattaacg gtaagtcgaa atcgctcagt gagttgttca tgactcaccc gccgctggat
    11041 aaacgaattg aagctctgcg tacgggtgaa tacctgaagt aatatgaagt aaatactaaa
    11101 aagtgcgtcc tgatcgacgc gcttttttta tgccctggat cgtggctgag tgatacgtaa
    11161 accactgaca caggcagcaa tcactgccag aatagccgca gccatcagcg aaacgtgcgt
    11221 accattatca ccgaactgat ttagcatcag cgccaccagt gccgcgccgc tactctgacc
    11281 cagtagacga gccgttccta acatgccact ggctccaccg ctacgttcgc gaggagcgga
    11341 ggtaataatg gtgtggttat tgggtgactg gaacaagcca aatccagcgc cacataagat
    11401 catcggccag ataatattga tatccgcagg tgacgcgggc agcagaacca gggaaaaaag
    11461 ccccgcagcc atgatgaaca accctagagc acccagcaat cctgcatgta cgcgttcaat
    11521 caaatagcct gccaacggag ccatcaccat cgttgctaac ggccacggtg tcagaagtaa
    11581 acctgtttcg acttcactac gcccgagcac ggtttgcagg taaaagggca gggaaaccat
    11641 tgccagcatt tgtgcgcaga aagagcaaac agatgtgcaa atagaaagtg aaaacagcgg
    11701 gatacgcagt aaatccaccg gtagcagcgg tacgggaaga gaaagctggc ggcgaataaa
    11761 gaaaatacca acaacaacca ttaccaccag ttccgcagca attaacgtca gcgattgccc
    11821 ctgagcgaaa ccactcaacg cagtgataag caggccgaag gttaacgcgt tcatcacggc
    11881 gctgggcagg tcgaaacggg gtttactggc gcgagaacca ttgggtggca gaaaacgcat
    11941 cgccagaagc agggcgataa tacctaacgg tacgttgatt aaaaataacc atttccagga
    12001 tgcgatggag aggattgctg cagcaattgt cggcccggca gcagaagaga cggcaacaat
    12061 aaacgagttt atgcccatcc ctctccccag aaaacgttgt ggatagatca ggcggataag
    12121 tgcggtatta acgctcatca acgctgcacc gccgaaacct tgtatgacac gcgcaagggt
    12181 gagcatttgc agcgaatcag aaagggcgca gaacagtgaa gacaacagaa aaacgaccag
    12241 accgcattta taaatacgtc gatagccaaa catatcgccc agaaacgaaa acgagagcag
    12301 ggagatgaca atggcgattt gataggcgtt cactacccag atggaactgg ctggcgtggc
    12361 atgaaggtcc gtggcgattg ttggcagggc gacgttggcg attgcgccgt caaggacagc
    12421 catcgaaata ccaatcacaa tggttaatat cgcaccgtat cgctggggca atggcaggcc
    12481 gtcggcctga acttttggca taggaatttt atatctttgg tgaataatca acaggggtat
    12541 gattctagca ctgatattca cggtggatgt cgcagaattg taactaaccg gcaaaagatg
    12601 gattgcgacc cccctggtgc gaaattataa taaaaaacag ttctgatttt tataaaacac
    12661 tcgcaatgag gtgataaatg gctaacgcag atctggataa acagcctgat tctgtatctt
    12721 ccgtgctaaa agtttttggc attttgcagg cgctgggtga agagcgcgaa atagggataa
    12781 ccgagctgtc gcagcgcgtc atgatgtcaa aaagcaccgt ttatcgcttt ttacagacca
    12841 tgaaaacctt aggttatgtg gcgcaggaag gggagtcgga gaaatattcc ctgaccctga
    12901 aattgtttga actgggcgct cgcgcgttac aaaacgtcga tttaattcgt agcgcagata
    12961 tccagatgcg tgagatctcc cgcctgacca aagaaactat ccacctcggc gcactggacg
    13021 aagacagtat tgtttacatt cacaaaattg actctatgta caatttgcgc atgtattcac
    13081 ggattgggcg tcgtaatccg ctgtacagca ccgcgattgg taaggtactg ctggcatggc
    13141 gcgatcgcga tgaagtgaag caaattcttg agggcgtgga gtataaacgc agtaccgagc
    13201 ggaccatcac cagtacagaa gcgttattac ccgttctgga ccaggtgcgc gagcaggggt
    13261 atggcgaaga taacgaagag caggaagaag ggctgcgatg cattgcggta ccggtatttg
    13321 atcgctttgg cgtggtcatt gccggtttga gcatctcctt cccgacgttg cgtttctctg
    13381 aagagcgttt acaggaatat gtcgcaatgt tgcataccgc agcgcgcaaa atttctgccc
    13441 aaatgggtta tcacgactat ccgttctgat gagagtaaga acctgtcgga atatcaaaca
    13501 gacaggttct ttatttagca tgagaaaaat aaagttgaag gtgcgttata ttaaacgcgc
    13561 ttgctataag aatattttac tcatgagtga gaatctggtt atttattacc cttaaccatt
    13621 atcggccacg atattgcttt tacgtaacag tgggcaatct gttatcccca agaaaccatt
    13681 tttagtgtgc aagtattgta ccgtgctggt gcctctggca gtcagatagg tacattgcaa
    13741 acctaatcct gcggcattct ctttgcttcc aatcaaaacg ccatatccgc tgagtaataa
    13801 tcctatccat accagtgcta tcagcataac tgtgcgaatg atgaatcgca ttacaacctc
    13861 ttctcttttt atgttcgctt aatcgtagcg gcaatatgcg ctgaagcaag ctactcattc
    13921 cgaaaaagca cgaatatcga catagttagg cgctgtttaa ctaacgcatg ctagtttaat
    13981 gacataaggt aggtgaagcg gagattggag tgaaaaagtt tcgatgggtc gttctggttg
    14041 tcgtggtgtt ggcttgcttg ctgctttggg cgcaggtatt caacatgatg tgcgatcagg
    14101 atgtacaatt tttcagcgga atttgtgcca ttaaccagtt tatcccgtgg tgatatcatt
    14161 ttttcagcac tagattttct tcctctccag cagtggtaga atagcgcctc tactcagagg
    14221 tggtgaaatg aacgaagttg taaattcagg cgtgatgaac attgcgtctt tggttgtatc
    14281 ggtggtggtt cttcttatcg ggctcatctt gtggtttttt atcaatcgtg ccagttcacg
    14341 gactaacgaa cagattgaac tgcttgaggc gttgctggat cagcaaaaac gtcaaaatgc
    14401 actgttacgt cgtttgtgcg aagcaaacga accagagaaa gcagataaaa agaccattga
    14461 gagtcaaaaa tcggttgatg acgaagatat tattcgcctg gtcgccgaac gataatcctt
    14521 cctcaatctt gagtaacccc gtcgttgaag ggttactcaa ttcatcctga ttatacgcac
    14581 tgtcatggtg caactgcttc aaattaaaac tctggtctga cttcagataa ttatcatatt
    14641 atttatttgc gtaacgggat atcagaaaaa gatattttcc tcattaattt attaggatgt
    14701 ttacatcgga tttgtgatta agcgtggtat tatttattag cgaaacgttt ctctcttgat
    14761 ttttttgctc attcatcaat ttttcttatt tta
//
LOCUS       DADMHM010000092        14716 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.093, whole genome shotgun sequence.
ACCESSION   DADMHM010000092 DADMHM010000000
VERSION     DADMHM010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14716)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14716)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14716
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.093"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            3..155
                     /locus_tag="JN125_002413"
     CDS             3..155
                     /locus_tag="JN125_002413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015386348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872174.1"
                     /translation="MLLSPLTTYAKNYPCSGKKGGVSHCTSDGKFVCNDGTISKFKKI
                     CTKNSR"
     gene            416..1396
                     /locus_tag="JN125_002414"
                     /pseudo
     CDS             416..1396
                     /locus_tag="JN125_002414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226013.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
     gene            complement(1501..2037)
                     /locus_tag="JN125_002415"
     CDS             complement(1501..2037)
                     /locus_tag="JN125_002415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HAY8872175.1"
                     /translation="MRRANDPQRREKIIQATLEAVKLYGIHAVTHRKIATLAGVPLGS
                     MTYYFSGIDELLLEAFSSFTEIMSRQYQAFFSDVSDAQGACQAITDMIYSSQVATPDN
                     MELMYQLYALASRKPLLKTVMQNWMQRSQQTLEQWFEPGTARALDAFIEGMTLHFVTD
                     RKPLSREEILRMVERVAG"
     gene            2121..3329
                     /locus_tag="JN125_002416"
     CDS             2121..3329
                     /locus_tag="JN125_002416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8872176.1"
                     /translation="MTVNSSRNALKRRTWALFMFFFLPGLLMASWATRTPAIRDILSV
                     SIAEMGGVLFGLSIGSMSGILCSAWLVKRFGTRNVILVTMSCALIGMMILSLALWLTS
                     PLLFAVGLGVFGASFGSAEVAINVEGAAVEREMNKTVLPMMHGFYSLGTLAGAGVGMA
                     LTAFGVPATVHILLAALVGIAPIYIAIQAIPDGTGKNAADGTQHGEKGIPFYRDIQLL
                     LIGVVVLAMAFAEGSANDWLPLLMVDGHGFSPTSGSLIYAGFTLGMTVGRFTGGWFID
                     RYSRVAVVRASALMGALGIGLIIFVDSAWVAGVSVVLWGLGASLGFPLTISAASDTGP
                     DAPTRVSVVATTGYLAFLVGPPLLGYLGEHYGLRSAMLVVLALVILAAIVAKAVAKPD
                     TKTQTAMENS"
     gene            3329..4144
                     /gene="ybjI"
                     /locus_tag="JN125_002417"
     CDS             3329..4144
                     /gene="ybjI"
                     /locus_tag="JN125_002417"
                     /EC_number="3.1.3.104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-amino-6-(5-phospho-D-ribitylamino)uracil
                     phosphatase"
                     /protein_id="HAY8872177.1"
                     /translation="MSIKLIAVDMDGTFLSDQKTYNRERFMAQYQQMKAQGIRFVVAS
                     GNQYYQLISFFPEIANEIAFVAENGGWVVSEGKDVFNGELSKDAFTTVVEHLLTRPEV
                     EIIACGKNSAYTLKKYDDAMKTVAEMYYHRLEYVDNFDNLEDIFFKFGLNLSDELIPQ
                     VQKALHEAIGDIMVPVHTGNGSIDLIIPGVHKANGLRQLQKLWGIDDSEVVVFGDGGN
                     DIEMLRQAGFSFAMENAGSAVVAAAKYRAGSNNREGVLDVIDKVLKHEAPFDQ"
     gene            4230..4514
                     /locus_tag="JN125_002418"
     CDS             4230..4514
                     /locus_tag="JN125_002418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872178.1"
                     /translation="MIMKNCLLLGALLMGFTGVAMAQSVTVDVPSGYKVVVVPDSVSV
                     PQAVSVATVPQTVYVAPAPAPAYRPHPYARHLASVGEGMVIEHQIDDHHH"
     gene            complement(4555..5784)
                     /gene="mdfA"
                     /locus_tag="JN125_002419"
                     /pseudo
     CDS             complement(4555..5784)
                     /gene="mdfA"
                     /locus_tag="JN125_002419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308949.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdfA"
     gene            6069..6665
                     /gene="ybjG"
                     /locus_tag="JN125_002420"
     CDS             6069..6665
                     /gene="ybjG"
                     /locus_tag="JN125_002420"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HAY8872179.1"
                     /translation="MLENLNLSLFSLINATPDSAPWMISLAIFIAQDLITVVPLLAAV
                     LWLWGLTAQRQLVIKIAIALAVSLFVSWTMGHLFPHDRPFVENIGYNFLHHAADDSFP
                     SDHGTVIFTFALAFLCWHRLWSGSLLMVLAVVIAWSRVYLGVHWPLDMLGGLLAGMIG
                     CLSAQIIWQAMGHKLYQRLQSWYRFCFALPIRKGWVRD"
     gene            6723..7481
                     /gene="deoR"
                     /locus_tag="JN125_002421"
     CDS             6723..7481
                     /gene="deoR"
                     /locus_tag="JN125_002421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional repressor DeoR"
                     /protein_id="HAY8872180.1"
                     /translation="METRREERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLNN
                     HSAPVVLLGGYIVLEPHSASHYLLSDQKSRLVEEKRRAAKLAATLVEPDQTLFFDCGT
                     TTPWIIEAIDNEIPFTAVCYSLNTFLALKEKPHCRAFLCGGEFHASNAIFKPIDFQQT
                     LNNFCPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMSMAQKHVLVVDHSKFGKVRPA
                     RMGDLKRFDIVVSDCCPEDEYVKYAQTHRIKLMY"
     gene            complement(7528..8730)
                     /gene="dacC"
                     /locus_tag="JN125_002422"
     CDS             complement(7528..8730)
                     /gene="dacC"
                     /locus_tag="JN125_002422"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase"
                     /protein_id="HAY8872181.1"
                     /translation="MTQYSSLLRGLAAGSAFLFLFAPTAFAAEQTVEAPSVDARAWIL
                     MDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGKDAWATGN
                     PALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIGLMNGYAK
                     KLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFTFNKIRQP
                     NRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEK
                     LLTWGFRFFETVTPIKPDATFVTQRVWFGDKSELNLGAGEAGSVTIPRGQLKNLKASY
                     TLTEPQLTAPLKKGQVVGTIDFQLNGKSIEQRPLIVMENVEEGGFFGRMWDFVMMKFH
                     QWFGSWFS"
     gene            9023..9601
                     /locus_tag="JN125_002423"
     CDS             9023..9601
                     /locus_tag="JN125_002423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HAY8872182.1"
                     /translation="MLTLEELELPYEQILAGREFGINHDADFLAMNPNGLVPLLRDDE
                     SDLILWESNAIVRYLAAQYGQKRLWIDSPARRAEAEKWMDWANQTLSNAHRGILMGLV
                     RTPPEERDQAAIDASCKECDALFALLDAELAKVKWFSGDEFGVGDIAIAPFIYNLFNV
                     GLTWTPRPNLQRWYQQLTERPAVRKVVMIPVS"
     gene            complement(9598..10713)
                     /locus_tag="JN125_002424"
     CDS             complement(9598..10713)
                     /locus_tag="JN125_002424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HAY8872183.1"
                     /translation="MHRQSFFLVPLICLSSALWAAPATVNVEVLQDKLDHPWALAFLP
                     DNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFVQSRRIWL
                     SYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYL
                     FIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGARAEIWSYGIRNPQG
                     MAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAG
                     TEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRI
                     LTDRGQRIRDVRTGPDGYLYVLTDESSGELLKVSPRN"
     gene            complement(10824..11207)
                     /gene="bssR"
                     /locus_tag="JN125_002425"
     CDS             complement(10824..11207)
                     /gene="bssR"
                     /locus_tag="JN125_002425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm formation regulator BssR"
                     /protein_id="HAY8872184.1"
                     /translation="MFVDRQRIDLLNRLIDARVDLAAYVQLRKAKGYMSVSESNHLRD
                     NFFKLNRELHDKSLRLNLHLDQEEWSALHHAEEALATAAVCLMSGHHDCPTVITVNAD
                     KLENCLMSLTLSIQSLQKHAMLEKA"
     gene            11421..12746
                     /gene="rimO"
                     /locus_tag="JN125_002426"
     CDS             11421..12746
                     /gene="rimO"
                     /locus_tag="JN125_002426"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HAY8872185.1"
                     /translation="MSKVTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDD
                     ADMVIVNTCGFIDSAVQESLEAIGEALNENGKVIVTGCLGAKEDQIREVHPKVLEITG
                     PHSYEQVLEHVHHYVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIP
                     SMRGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGKPVKTS
                     MVSLCEQLSKLGIWTRLHYVYPYPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMK
                     RPGSVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCF
                     KYSPVEGADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDE
                     EGAIGRSMADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV"
     gene            complement(12793..14121)
                     /locus_tag="JN125_002427"
     CDS             complement(12793..14121)
                     /locus_tag="JN125_002427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HAY8872186.1"
                     /translation="MSRINKFVLTVSLLIFIMISAVACGIYTQMVKERVYSLKQSVID
                     TAFAVANIAEYRRSVAIDLINTLNPTEEQLLVGLRTAYADSVSPSYLYDVGPYLISSD
                     ECIQVKEFEKNYCADIMQVVKYRHVKNTGFISFDGKTFVYYLYPVTHNRSLIFLLGLE
                     RFSLLSKSLAMDSENLMFSLFKNGKPVTGDEYNAKNAIFTVSEAMEHFAYLPTGLYVF
                     AYKKDVYLRVCTLIIFFAALVAVISGASCLYLVRRVINRGIVEKEAIINNHFERVLDG
                     GLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNI
                     NDTFGHLLGDEVLMKVVKILKSQIPVDKGKIYRFGGDEFAVIYTGGTLEELLSILKEI
                     VHFQVGSINLSTSIGVAHSNECTTVERLKMLADERLYKSKKNGRAQISWQ"
     gene            complement(14129..>14716)
                     /locus_tag="JN125_002428"
     CDS             complement(14129..>14716)
                     /locus_tag="JN125_002428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HAY8872187.1"
                     /translation="GFINELGYQIIKTAMGEFRHFSQRASLKDDFLLHINVSPWQLNE
                     PHFHERFTTIMKENGLKANSLCVEITETVIERINEHFYLNIEQLRKQGVRISIDDFGT
                     GLSNLKRFYEINPDSIKVDSQFTGDIFGTAGKIVRIIFDLARYNRIPVIAEGVESEDV
                     ARELIKLGCVQAQGYLYQKPMPFSAWDKSGKLVKE"
BASE COUNT         3754 a         3714 c         3496 g         3752 t
ORIGIN      
        1 ctttgttatt aagcccacta actacctatg ctaaaaatta tccttgttct gggaaaaagg
       61 gaggtgtctc tcactgtacc tccgatggaa aatttgtttg caatgatgga actattagta
      121 aattcaaaaa aatctgtact aaaaactcac gataactttt gcttttatat ctgcgtctaa
      181 aataaaaatg agccgcaggt taaccgcaaa agttacatgc tcacatagca aaaagaatag
      241 ccaacttcat tatggcttca gtgagatgta tggtcgtagg atttcataca ttgacactgg
      301 ttatacatac agtaaaaata ctctctactg gagggcattt tttatggcag tacgaaaact
      361 caccactggg aaatggcttt gcgaatgtta ccccgccgga cgaagtgggc gtcgtgtgcg
      421 taaacaattc gccaccaaag gcgaagcact ggcttttgag cgccacatga tggaagaaac
      481 cgaagcaaag ccctggctgg gtgaatcagt gaatcgtcga acactgaaag acgtggttga
      541 gctatggttc aaactacatg gtaaatctct gacagctggg cagcatgtct atgacaaatt
      601 gctgttgatg gttgacgctc tgggcaatcc tcttgcaacc gatctcacct ctaaaatgtt
      661 tgcccactat cgagataaac acctgacagg cgagatctac ttcagcgaga aatggaagaa
      721 aggagcaagc ccggtcacca ttaacctgga gcaaagctat ctaagtagtg tttttagcga
      781 actatcccgt ctgggcgaat ggtcgtatcc gaacccactg gagaacatgc gaaaattcac
      841 catcgcagaa aaagagatgg catggcttac ccatgagcag attgttgaat tgctggctga
      901 ttgcaaacgt caggacccaa ttctggcact ggtagttaag atatgcttaa gcacaggcgc
      961 acgctagcgt gaagccgtaa atcttacccg ctcacaggtg accaaatacc gaattacctt
     1021 tgtcagaacg aaggggaaga aaaacagaag catccctatc agtaaagagc tttacgaaga
     1081 gatcatggcg cttgatgggt tcaatttctt cacagactgc tattttcaat ttttatccgt
     1141 gatggaaaaa acgtctatcg tgctccctcg cggtcaactc acacacgttc tgcgccatac
     1201 gtttgcggcg cacttcatga tgtcgggtgg aaacattctg gccttacaaa aaattctcgg
     1261 acaccacgat ataaaaatga ctatgcgtta cgcacatctg gcaccggatc atctggaaac
     1321 ggcgctccgt ttcaatcctc tggcaacgct gccaagtggc gacaaagtgg cggcagcggt
     1381 tggcattacc ccgtaataac caccactgac caccaaccta acttattgtt tttaatctaa
     1441 cttattgttt tcattaaccc gtttacataa atgggttttt tgttatctaa aatttatcta
     1501 ctaccctgca accctctcaa ccatcctcaa aatctcctcg cgcgatagcg gcttacggtc
     1561 ggtgacaaaa tgcagcgtca tcccctcaat aaacgcatca agcgcgcggg cggttccggg
     1621 ttcaaaccat tgttcgagcg tttgctgact gcgctgcatc cagttttgca ttaccgtttt
     1681 taatagcggt tttcggctag ccagcgcgta gagctggtac atcagctcca tattatccgg
     1741 cgttgcaacc tgtgagctgt agatcatatc ggtgatagcc tggcatgcgc cttgagcatc
     1801 actaacatcg ctaaaaaatg cctgatattg ccgggacata atctcagtaa aactgctgaa
     1861 cgcctccagc aacaactcat caattcctga aaaatagtag gtcatcgatc ccaacggtac
     1921 cccggcaagg gtagcaattt tgcggtgcgt aacagcatgt attccgtaaa gtttcaccgc
     1981 ctccagcgtg gcctggataa ttttttctcg ccgttgcgga tcgttagcgc gacgcatgtc
     2041 atttcctctg tctgcaattg tgtacaaatg tacacaacct tgctaatgtt gtcttccctc
     2101 ttcttatttt gacgtgatct atgaccgtaa attcttcacg taatgcattg aaacgccgaa
     2161 cctgggcgct gtttatgttc ttctttttgc caggcctgtt aatggcgtcc tgggcaaccc
     2221 gtacgcctgc tatccgcgat attctctctg tctcgatcgc tgaaatgggc ggtgttctct
     2281 ttggtctgtc gatcggttcg atgagcggta ttctctgctc ggcgtggtta gtgaaacgct
     2341 ttgggacacg taatgtcatc ctggtcacga tgtcctgcgc attgatcggg atgatgatat
     2401 taagtctggc actctggctg acatcgcccc tgctctttgc cgttggtctc ggcgtctttg
     2461 gggcaagttt tggttctgcg gaagtggcga taaacgttga aggtgccgcc gttgagcgag
     2521 aaatgaataa aacggttttg ccgatgatgc acggttttta tagcctgggc acgctggcag
     2581 gcgctggtgt cgggatggca ctgacggcct ttggcgttcc ggcaacggtg cacattttat
     2641 tggcggcgct ggtaggtatc gcgcctattt atatcgccat tcaggcaatc cctgacggta
     2701 cgggcaaaaa tgctgccgat ggcacccagc atggcgaaaa aggcattcct ttttatcgcg
     2761 atatccagtt gctgttgatt ggtgttgtag tgctggcgat ggcctttgcc gaaggttctg
     2821 ccaacgactg gttaccctta ttaatggttg acggtcacgg ttttagccct acttccggct
     2881 cgctgattta tgccggtttt accctgggga tgaccgttgg acgcttcact ggcggttggt
     2941 tcatcgaccg ttacagtcgc gttgccgtgg ttcgggccag tgcactaatg ggggcgttgg
     3001 gtattgggct gattattttt gtcgatagcg cctgggtcgc tggggtgtct gttgtactct
     3061 ggggactggg tgcctcgctg ggcttcccgc tgaccatttc tgccgccagc gataccggcc
     3121 ccgatgcacc aacccgcgtc agtgtggtag caacgaccgg ttatctggct ttcctcgtcg
     3181 ggccgccgct gctgggctat ctcggcgaac attatggatt acgtagtgca atgctggttg
     3241 tactggcgct ggttattctc gcggctattg tcgcgaaagc cgtcgccaaa cccgatacca
     3301 aaacgcagac ggcgatggag aatagttgat gagcattaaa ttaattgcgg tagacatgga
     3361 tggtactttc ttaagcgatc aaaaaaccta taaccgtgag cggtttatgg ctcagtatca
     3421 gcaaatgaaa gcacaaggca ttcgctttgt ggtcgccagc gggaatcaat attatcagtt
     3481 gatctctttc ttccctgaaa ttgctaatga aattgccttt gtggctgaaa acggcggctg
     3541 ggtagtgagt gaaggcaaag atgtttttaa tggcgagctg tcgaaagatg cctttactac
     3601 tgtcgtggaa catttgctga cgcgcccgga agtggaaatt attgcctgcg gaaaaaatag
     3661 cgcctatacg ctcaaaaaat atgacgatgc catgaaaacg gtggcggaaa tgtattatca
     3721 ccgtctggaa tacgtcgata actttgacaa cttagaagat attttcttta agtttggcct
     3781 gaatctttcc gatgaactga ttccacaagt acaaaaagca ttacatgagg ccatcggcga
     3841 tattatggtg ccagtccaca ccggcaacgg cagcatcgat ctgattatcc ccggcgtaca
     3901 taaagccaat ggccttcgcc aactgcagaa attatgggga atagacgaca gcgaagtggt
     3961 ggtctttggc gatggcggta acgatattga gatgctgcgt caggcaggct ttagttttgc
     4021 aatggaaaat gccggcagcg cggtcgtcgc agcggcaaaa taccgggcag gctccaataa
     4081 ccgtgaaggc gtactggatg tgatcgataa agtgcttaaa cacgaagcgc catttgacca
     4141 ataaaaacgg cagcacgccc ggcaacacaa tacctgaatg aaggctgcat aattcgcaga
     4201 aattaacccg ctgcattatt tcaggcgaaa tgattatgaa aaattgtcta ctgttgggcg
     4261 cgcttttaat gggctttact ggtgtggcga tggcgcaaag tgtcaccgtc gatgtgccga
     4321 gtggatacaa agtggttgta gttcctgatt cagtcagcgt tccacaagcg gtcagcgtcg
     4381 cgactgtgcc gcaaaccgtc tatgtggctc ctgcgccagc tccggcttac cgcccgcatc
     4441 cttatgctcg ccatcttgcc agcgtaggtg aagggatggt tatcgaacac cagattgacg
     4501 accatcacca ttaattcgag aatgcctgat cgcacaaagc agtcaggcat ttttttaccc
     4561 ttcgtgagaa tttcccatct gtttatcttt taaaaagata accatcagcg acagccacaa
     4621 aattccgttg acaaggttga agagattaaa ctgtccgttg cccccgttca gccaggcatg
     4681 tttgctgatt tcaataccaa cggtaaagat cagcatttgc agcattccca tcgcagcaga
     4741 aaccgtacct ttactcatat cgctggcaaa cagggttaat cgcaccagtc ccgcattcgc
     4801 cagaccaata ccgaaagcat aaatacttaa cccggcagtc atccataaat acgcgtgcga
     4861 tgagataacc gttgccgcag cagcgaccaa cagaccaatc ataatcggcc agccgcccat
     4921 aattatcagc gaacgtacgg tgcggcgcga ggtcagacgc gctaacagca agttacccgc
     4981 aattaacgcc ccgaaaatag gcacttgcag caagccatat tcatagctgc tcaactgctc
     5041 gccggtaatg atgataatcg gcgactgggc gatccacgcc agcaatggca ggctaacgaa
     5101 tcccagcgcc agcgcccccg ccacaaagcg gccgttcttc agcaccagct tatagtcacg
     5161 accgagttct ttcagtgaca gtttctcgcc tatacgcgtg gcggtttcag gcatagctcg
     5221 ttgcagaccg aaaaaggaga tcgctgccaa tgcggcaaac aaaacaaaca tcccctccca
     5281 gggcagcaca tggatccacg ccgcgcccac cagcggacca agtagcggag caatcagcgc
     5341 cacgttcgcc atcagcgcgg tgatcttgat acaaaccgcc tcttcgaaag attcctgaat
     5401 tgcggcgtat cccacagcgc caatgaaaca gaggcttatg ccctgcaaga agcgcaacag
     5461 agtgaattgt tcaatgtttt gcgccagtaa tattgccaga caggtgatga taaaccacac
     5521 ccccccgcca gcatcaccgg acggcgacca atacgatccg acagcggccc caggagccat
     5581 tgtaaaaaca tcccgcccgc cagatatgcg gtcattgaag taggaaccca atcaatgccc
     5641 gcctgatatt gttccaccac ggccaacata ccgggttgaa tcatatctgc cgatataggt
     5701 tgaaaattcg taaagcacca gacagagagg gaaaagtaac gcctgacgtc caagcctggc
     5761 accggaagct aatttatttt gcatgcaatt tcttcgccaa taataatcgc gcagagttta
     5821 ataaaagcgc agctaacgag aaagcgaatt ttgtagctga aaccacggtt aagcacattc
     5881 ttacattatt gcgagtatag ctacgctttc tttaagtttt atttaaccta tgcccgttac
     5941 aatcacccac cgtaaacagg ccgcttgagg gaaataagac gatgccgctt tacccagttt
     6001 aacctgcact ttattctcaa cgacttgcct gtattggctc ccttttaatc actttgcgtc
     6061 gggaagttat gctggaaaat ttgaatctct ctctattctc tcttattaac gcgacgccag
     6121 actcggctcc gtggatgatc tcgttggcga tttttattgc tcaagatttg attaccgtgg
     6181 tgccgctgct ggccgcggtg ctttggttgt gggggcttac agcacaacgg caactggtga
     6241 taaaaatcgc tatcgcgctg gcggtcagcc tgtttgtgtc ctggacgatg ggacatcttt
     6301 ttccgcacga ccgacccttt gtcgaaaata tcggctataa cttcctgcat catgcggcgg
     6361 atgactcatt cccaagcgac cacggtacgg tgattttcac ctttgcactg gcatttttat
     6421 gctggcatcg cctgtggtcc ggctcacttt taatggtgct ggccgtcgtc attgcctggt
     6481 cgcgcgttta tcttggcgtc cactggccgc tggatatgct cggtggattg ctggcaggta
     6541 tgattggctg ccttagtgcc cagattatct ggcaagcgat ggggcataaa ctctatcaac
     6601 gtctgcaatc gtggtatcgc ttctgttttg cattaccgat ccgcaaaggc tgggtgcgtg
     6661 actgatctct gctaaaaagt gtagtattga gcggctcgct tcaataacta ttcagaggga
     6721 ttatggaaac acgtcgcgaa gagcgtatcg ggcagctgct gcaagaatta aaacgcagcg
     6781 ataagttaca tcttaaagac gccgccgccc tgcttggggt ttcggagatg acgattcgtc
     6841 gcgatctgaa caaccacagt gcgcccgtcg ttttgctcgg cggctatatt gttctggaac
     6901 cgcatagtgc cagccattac ctgttaagcg atcaaaaatc ccgcctggtg gaagaaaaac
     6961 gccgggcggc aaaactggct gcgacactgg tagaacccga tcagaccctc ttttttgact
     7021 gtggcaccac cacgccgtgg attattgaag cgattgataa tgaaatccct tttaccgccg
     7081 tttgttattc gctaaatacc tttctggcgc tgaaagagaa accccattgc cgcgcatttc
     7141 tgtgcggtgg tgaatttcac gccagcaacg ccattttcaa acccatcgat tttcagcaaa
     7201 cgttgaataa tttttgcccg gatatcgctt tttattccgc ggcgggcgtg catgtcagta
     7261 aaggcgctac ctgttttaat cttgaagagt tgccggtaaa acactgggcc atgtcgatgg
     7321 cgcaaaagca tgtgctggtt gtcgaccaca gtaaatttgg caaggtccgt ccggcgcgca
     7381 tgggtgacct gaaacgcttt gatattgtgg tgagtgattg ttgcccggaa gatgagtatg
     7441 tgaagtacgc gcagacgcac cgtattaagt tgatgtatta atgacgtata accggatgac
     7501 gtttcgcgcc atccggttat cagaagatta agagaaccag ctgccgaacc actgatggaa
     7561 tttcatcatc acgaaatccc acatccgacc aaagaatccg ccctcttcca cattttccat
     7621 cacgatcagc ggacgctgct caatggattt accgttaagc tggaaatcaa tggtcccgac
     7681 aacctgacct tttttcagcg gtgcggtaag ctgcggttcc gttaacgtgt agctcgcctt
     7741 caggtttttc agctgcccac gcggtatggt cactgagccc gcttcgcctg ccccgagatt
     7801 cagttcgctc ttatcaccaa accagacgcg ctgagtcaca aaggtggcat caggtttaat
     7861 tggcgtcacg gtttcaaaga agcggaaacc ccaggtcaat aatttctcag actcattaaa
     7921 acggatacgg tcagttttcg cccccaacac tacggagatt aaacgcatat cgccctgggt
     7981 agccgaagca accagattat atcccgcgcc tgccgtggtt cctgtcttca tgccatcaac
     8041 attcagattg ctgctccaca gcagacggtt acggttaggc tgacgaattt tgttgaaggt
     8101 gaactctttc tctttatgaa tggcgtactc ttccggcaca tcgtggatca atgctttacc
     8161 cagcaatgcc atatcgcgcg cggtactgaa ctgccccggc gcatccaggc cgtgcaccgt
     8221 ctggaaggta gtgttggtca gacccagttt tttggcataa ccattcatca gaccaataaa
     8281 tgactcctgg ctcccggcaa cgtaatcggc cagcgcaata caggcgtcat taccggactg
     8341 gataatcaca cctttgttca agtctgccac cgaaacctga tcgcccggtt tgaggaacat
     8401 taccgatgaa ccacgcagtg ccggatttcc cgtcgcccag gcatctttac cgaccgtcac
     8461 catatcggtg agtttaatct tatcggcctt aagcgcctgc ccaaccacat agctggtcat
     8521 gattttagtc aggctcgcgg gatccagttt ctcatccgca ttgccttctg ccagcacttt
     8581 accgctggcg taatccatta aaatccatgc acgcgcatcc acgctcggcg cttcaacggt
     8641 ttgttcggcc gcgaatgccg ttggggcaaa aaggaataaa aatgcagaac ccgctgcaag
     8701 accacgaagg agagaggagt attgcgtcat aaatgccacc cgagtatcca ttcaaaaaaa
     8761 tacgttatat cgccgtatga taagttcggt gattaataac gcacacacaa acttaaagaa
     8821 accgtaagtt ggtaaagttt ttaaagttta tgcaatatcc tgccgcttcg ctgcttctgg
     8881 tgtcattttt ttgccagctg ttgcttaaaa gttaacttta cttcaccatc ggagtcctgt
     8941 tcagcctgtg gctgcctgtc ggaaaagggg tgagtatgat tacgctgtgg ggtcggaata
     9001 attcaaccaa cgtaaaaaag tattgctgac gctcgaagaa ctggaactac cttatgagca
     9061 aattctcgcg ggccgtgagt ttgggataaa tcacgatgct gattttctgg cgatgaaccc
     9121 taacgggctg gtgccgttgt tgcgtgacga cgaaagtgat ctcattcttt gggaatcaaa
     9181 cgccattgtc cgctatctgg cggcacagta cgggcaaaaa cgcctgtgga tcgactcacc
     9241 ggcacgtcgt gcggaagcgg aaaaatggat ggactgggca aaccagacgc tcagtaatgc
     9301 ccatcgaggg atcctgatgg gattagtcag aacaccaccg gaagagcgcg atcaggccgc
     9361 cattgatgcc agttgcaaag agtgcgacgc cctgtttgcc ctgctcgatg cggaactggc
     9421 aaaagtaaaa tggttctctg gcgacgagtt tggtgtgggc gatatcgcta tcgcaccgtt
     9481 catctacaat ttgtttaacg ttggcctgac ctggacaccg cgtccaaatc tgcaacgctg
     9541 gtatcagcaa ctcactgaac gccccgcagt gcgcaaagtg gtgatgattc ccgttagcta
     9601 attgcgtggg ctaactttaa gtaattcccc actggactcg tcggtgagaa cgtataaata
     9661 accgtcgggt ccagtgcgaa catcacgaat tcgctgccct ctgtccgtta aaatacggcc
     9721 atcttctgtc actttgtcgc cgttgacgct catcacaatg acatctttat ctttcagcgc
     9781 gccaataaat aatttttgct gccactgggg gaatttatcg ctgttataga aggccatgcc
     9841 gctcacagcg ggcgaatctt tccagtaaaa aacaggttgc tcggtcccgg cgacgatctc
     9901 ccctttcgct tccggtatct taaagcctga atagttgatt ccccaggttg ccagcggcca
     9961 gccgtagttt ttgccttttt gcgggatatt aatttcatca ccaccgcgcg ggccatgttc
    10021 attcagccac agtgcattac tccacggatt catcgccatt ccttgcggat tacgaatgcc
    10081 ataagaccag atctcggcgc gcgcaccgga ttcctttata aaaggattat catccgggat
    10141 ttcgccctga tcggtcagac gcaccagttt gccctgtaat ttatccagat cctgcgccgt
    10201 cgggcgctga ttgttttcgc ccagagcaat aaaaagataa cctttaccgt cgaataccag
    10261 ccgcccgcca aaatggttgc cggtagacag ttttggcatc tggcggaaga cggtgcggaa
    10321 gtcggtcact tttgagagat catcacttaa gcggccataa cccacagcag ttccggcttt
    10381 gccatcatcg ccaacttcgg aataacttaa ccagatgcgg cgagactgaa caaaatcagg
    10441 cgctaaaacc acgtccagca ggccgccctg cccgtgcgcc caaacgtccg gaactccgga
    10501 aagcggcgca gataatcctt ttcctgcttg ccaatgacgc aactcgccgc cgcgcagagt
    10561 gattaacata ccgtgattat cgggtaaaaa ggccagtgcc cagggatggt cgagtttgtc
    10621 ttgcagtact tcgacattta ccgttgcagg agccgcccag agagcggaag aaagacaaat
    10681 aaggggcaca aggaaaaagg attgtcgatg cataacgcct ccggattgac tctggcttaa
    10741 agcgtagtca gtggaggaga taacaaattc atttttacaa aaacttaaac atgaaggggg
    10801 agacgctttc tcccccttag ttttcaggcc ttctcaagca tggcgtgctt ctgcaggctc
    10861 tggatactca gcgttaagct catcagacaa ttttcaagct tatcggcgtt gacggtaata
    10921 acagtcgggc aatcatggtg cccactcatc aaacatactg cggctgtcgc taatgcttct
    10981 tcagcatgat gaagagcact ccactcttcc tgatccagat gaagattcaa ccgcagcgat
    11041 ttatcgtgca gttcgcgatt cagtttaaaa aagttatctc gtagatgatt gctttcgctg
    11101 acggacatgt atccttttgc cttcctcagt tgcacgtatg cagcgaggtc aacgcgtgcg
    11161 tcgatcaacc ggttcagcag atcgattcgc tgtctgtcaa cgaacatact tcgatcctcc
    11221 tctttccagc cttgttgcaa ttaaatagta tggctatttt tttgagcaaa atgctgtcca
    11281 ggatcaattc ttcacgccga attaacaaaa tttacatttc cttcgcctcc gccagcgaat
    11341 gagattgcga tacaaatttt atccagaact ctgtagaatc cctgccctga cctttcctgt
    11401 aactgaatat tttttaagct atgagcaaag taactcccca gccgaaaatc ggctttgttt
    11461 cccttggctg tccgaaaaac cttgtcgatt cagagcgtat tctcaccgaa ctccgcactg
    11521 aaggttatga cgtggtaccg agctatgacg atgcggacat ggtgatcgtc aacacctgcg
    11581 gctttattga cagcgcggta caagaatcac tggaagccat tggtgaagcg ttgaatgaaa
    11641 acggcaaggt aattgtgacc ggttgtctgg gggcaaaaga agatcagatc cgcgaagtcc
    11701 acccgaaagt gctggaaatc accgggcctc atagctatga gcaggttctg gagcacgttc
    11761 atcactacgt gccaaaaccg aaacacaacc cattcctgag cctggtgcca gaacaaggtg
    11821 tgaaactgac gccgcgtcat tatgcctatc tgaaaatttc ggaaggctgt aatcaccgct
    11881 gcaccttctg cattattccg tctatgcgcg gcgacctggt gagccgtccg attggcgaag
    11941 tgttaagtga agcgaaacgt ctggtagatg cgggcgttaa agagattctg gtgatctcgc
    12001 aggatacttc cgcctatggc gttgatgtta aacatcgtac tggcttccac aacggcaagc
    12061 cggtaaaaac cagcatggtc agcctgtgcg aacagttatc gaaactgggg atctggacac
    12121 gtctgcacta cgtttaccct tatccgcatg tggacgacgt catcccactg atggcagaag
    12181 gcaaaatcct gccgtatctg gacattccgt tgcagcacgc cagcccgcgc attctcaaac
    12241 tgatgaagcg tccgggttct gtagatcgcc aactggcgcg catcaaacag tggcgcgaaa
    12301 tctgcccgga actgacccta cgctcaacct ttattgtcgg cttccctggc gagacagaag
    12361 aagatttcca gatgctactc gacttcctga aagaagcgcg tctggatcgc gttggctgct
    12421 ttaaatacag cccggttgaa ggtgcagacg ccaatgccct gcctgaccag gttccggaag
    12481 aagttaaaga agaacgctgg aaccgtttca tgcagctgca gcagcagatt tccgccgagc
    12541 gcctgcaaga gaaagtgggc cgtgaaattc tggtgattat cgacgaagtg gacgaagaag
    12601 gcgcgattgg tcgcagcatg gcagatgcac cggaaatcga cggcgcggtt tatctcaatg
    12661 gtgaaaccaa cgttaagccg ggtgatatcc tgcgtgtgaa agtcgagcac gccgatgagt
    12721 acgatttgtg gggtagccgg gtttaattaa ttcaggccgg gcaaaatcat ttgtccggcc
    12781 tgcgaataat gattactgcc agctaatctg agccctgccg tttttcttac tcttatacag
    12841 ccgctcatcc gccagcattt tcaagcgttc gacggtggta cattcatttg aatgcgctac
    12901 accgatactg gtacttaaat taatgcttcc cacctggaaa tgaacgattt cttttagaat
    12961 cgacagcaac tcttccagcg ttccacccgt ataaatcacc gcaaattcgt caccgccgaa
    13021 gcggtagatt ttacctttat ctaccgggat ctgtgattta aggattttca ccactttcat
    13081 caacacttca tcgcccagca aatgaccgaa ggtgtcgtta atgtttttga atttatcgac
    13141 gtcaaacagg cacaaataac cgcctttttc cggcagcgct tttaaatctt cgtcaaagga
    13201 ttttctgccc attgctttgg tcaggtcgtc caggaacgcc gagttataca tactgtagag
    13261 ttttttgaca tcggcagccg aaaagaaaag cccgccatcc agtacgcgtt caaaatggtt
    13321 attaatgatg gcttctttct ccacaatacc acgattaatc actctgcgta ccagatagag
    13381 gcaactggca cccgatatca cagccaccaa tgcggcaaag aaaataatca atgtacagac
    13441 ccgcaaataa acatcttttt tatacgcaaa tacgtacaat ccggtcggca aataggcgaa
    13501 gtgctccatc gcttccgaaa cggtgaagat ggcgttttta gcattatatt catcaccggt
    13561 caccggttta ccgttcttaa atagagagaa catcaggttc tcgctgtcca tcgccagcga
    13621 ttttgacagt aaagaaaaac gctccagacc aagcaaaaat atcagactac gattgtgagt
    13681 taccggatag aggtaataga cgaaggtttt accgtcaaaa gagataaacc ctgtattttt
    13741 gacatgtcga tacttcacaa cctgcataat atctgcacaa taatttttct cgaactcctt
    13801 tacctgaata cattcgtcac tggaaatcag ataaggaccg acatcgtaca aataagaggg
    13861 ggaaaccgag tcggcgtaag ctgtgcgcaa accaaccaac agctgttcct ccgtgggatt
    13921 tagcgtgttg ataagatcaa ttgccacgct acgccgatat tcagcaatat ttgccaccgc
    13981 aaaagcagta tcaataacgg actgtttcag gctatacacc cgttccttta ccatttgagt
    14041 gtagatcccg caggcaactg ctgaaatcat gataaaaatc agcagactga ctgtaagtac
    14101 gaacttattg attctggaca tacgtaaact actcttttac taattttcca cttttatccc
    14161 aggcggagaa tggcataggt ttctggtaca gatacccctg agcctgaaca catcctaatt
    14221 taattaattc gcgcgcaacg tcttcgctct ctacgccttc cgcaatcacc gggatccggt
    14281 tatagcgtgc cagatcgaaa ataatgcgca caatttttcc cgcagtaccg aaaatatcgc
    14341 cggtaaattg cgagtccacc tttatgctgt ctggattaat ttcataaaaa cgtttcaggt
    14401 ttgacaaacc ggtgccaaag tcatcaatcg atatccgtac cccttgttta cgcagttgtt
    14461 caatattgag ataaaaatgt tcattaattc gctcgatcac ggtttcagtg atctcaacac
    14521 agaggctgtt cgccttcagg ccattttctt tcatgatggt ggtaaaacgc tcatgaaagt
    14581 gcggttcgtt taactgccag ggcgaaacat taatatgcag taagaaatca tccttcagcg
    14641 acgcacgctg actaaaatgt ctgaattcac ccattgccgt tttaataatc tgataaccca
    14701 gctcattgat aaaccc
//
LOCUS       DADMHM010000093        14534 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.094, whole genome shotgun sequence.
ACCESSION   DADMHM010000093 DADMHM010000000
VERSION     DADMHM010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14534)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14534)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14534
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.094"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            1..957
                     /gene="xylF"
                     /locus_tag="JN125_002429"
     CDS             1..957
                     /gene="xylF"
                     /locus_tag="JN125_002429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY8872188.1"
                     /translation="MLLTLCTSLLLTNVAAHAKEVKIGMAIDDLRLERWQKDRDIFVK
                     KAESLGAKVFVQSANGNGETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQEGI
                     KVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFR
                     AGQMKVLKPYVDSGKIKVVGDQWVDGWLPENALTANNNKIDAVVASNDATAGGAIQAL
                     SAQGLSGKVAISGQDADLAGIKRIAAGTQTMTVYKPITLLANTAAEIAVELGNGQEPK
                     ADTSLNNGLKDVPSRLLTPIDVNKNNIKDTVIKDGFHKESEL"
     gene            1035..2576
                     /gene="xylG"
                     /locus_tag="JN125_002430"
     CDS             1035..2576
                     /gene="xylG"
                     /locus_tag="JN125_002430"
                     /EC_number="7.5.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-xylose ABC transporter ATP-binding protein"
                     /protein_id="HAY8872189.1"
                     /translation="MPYLLEMKNITKTFGSVKAIDNVSLRLNAGEIVSLCGENGSGKS
                     TLMKVLCGIYPHGSYEGEIIFAGEEIQASHIRDTERKGIAIIHQELALVKELTVLENI
                     FLGNEITHNGIMDYDLMTLRCQKLLAQVSLSISPDTRVGDLGLGQQQLVEIAKALNKQ
                     VRLLILDEPTASLTEQETSVLLDIIRDLQQHGITCIYISHKLNEVKAISDTICVIRDG
                     QHIGTRDAAGMSEDDIITMMVGRELTALYPNEPHTTGDEILRIEHLTAWHPVNRHIKR
                     VNDVSFSLKRGEILGIAGLVGAGRTETIQCLFGVWPGQWEGKIYIDGKQVDIRNCQQA
                     IAQGIAMVPEDRKRDGIVPVMAVGKNITLAALNKFTGGISQLDDAAEQKCILESIQQL
                     KVKTSSPDLAIGRLSGGNQQKAILARCLLLNPRILILDEPTRGIDIGVKYEIYKLINQ
                     LVQQGIAVIVISSELPEVLGLSDRVLVMHEGKLKANLINHNLTQEQVMEAALRSEHHV
                     EKQSV"
     gene            2554..3735
                     /gene="xylH"
                     /locus_tag="JN125_002431"
     CDS             2554..3735
                     /gene="xylH"
                     /locus_tag="JN125_002431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose ABC transporter permease XylH"
                     /protein_id="HAY8872190.1"
                     /translation="MSKSNPSEVKLAVPTSGGFSGLKSLNLQVFVMIAAIIAIMLFFT
                     WTTDGAYLSARNVSNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGVAAICD
                     VWLGWPLPLTIIVTLVLGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGT
                     TVSPTSAAMSQIGQSYLPASTGFIIGALGLMAFVGWQWRGRMRRQALGLQSPASTAVV
                     GRQALTAIIVLGAIWLLNDYRGVPTPVLLLTLLLLGGMFMATRTAFGRRIYAIGGNLE
                     AARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGG
                     TSLAGGVGSVAGAVMGAFIMASLDNGMSMMDVPTFWQYIVKGAILLLAVWMDSATKRR
                     S"
     gene            3813..4991
                     /locus_tag="JN125_002432"
     CDS             3813..4991
                     /locus_tag="JN125_002432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XylR family transcriptional regulator"
                     /protein_id="HAY8872191.1"
                     /translation="MFTKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEED
                     FRARIDKIKDWLGDGVIADFDDKQIEQALADVDVPIVGVGGSYHLAESYPPVHYIATD
                     NYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREYAFRQLVAEEKYRGVVYQGL
                     ETAPENWQHAQNRLADWLQTLPPQTGIIAVTDARARHILQVCEHLHIPVPEKLCVIGI
                     DNEELTRYLSRVALSSVAQGARQMGYQAAKLLHRLLDKEEMPLQRILVPPVRVIERRS
                     TDYRSLTDPAVIQAMHYIRNHACKGIKVDQVLDAVGISRSNLEKRFKEEVGETIHAMI
                     HAEKLEKARSLLISTTLSINEISQMCGYPSLQYFYSVFKKAYDTTPKEYRDVNSEVML
                     "
     gene            complement(5099..5923)
                     /locus_tag="JN125_002433"
     CDS             complement(5099..5923)
                     /locus_tag="JN125_002433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein bax"
                     /protein_id="HAY8872192.1"
                     /translation="MILTPIRRYGAMILMLLTLVFSSEVLAKTHTTTASQKSHLTKAS
                     NKQVSSKQEYSRNSAKSSSLPDLRKYPSGTPRKKAFLRTVMPYITSQNAAITAERNWL
                     ISKQYQGQWSPAERARLKDIAKRYKVKWSGNTRKIPWNTLLERVDIIPTSMVATMAAA
                     ESGWGTSKLARNNNNLFGMKCMKGRCTNAPGKVKGYSQFSSVKESVSAYVTNLNTHPA
                     YSSFRKSRAQLRKADQEVTATAMIHKLKGYSTKGKSYNNYLFAMYQDNQRLIAAHM"
     gene            6243..8273
                     /gene="malS"
                     /locus_tag="JN125_002434"
     CDS             6243..8273
                     /gene="malS"
                     /locus_tag="JN125_002434"
                     /EC_number="3.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HAY8872193.1"
                     /translation="MKLASCFLTLLPGFAVAASWTSPGFPVFSEQGTGTFVSHAQLPK
                     GTRPLTLNFDQQCWQPADAIKLNQMLSLQPYSNTPPQWRLFRDGKYTLQIDTRSGTPT
                     LMISIQNAAEAVANLVRECPKWDGLPLTLDVSATFPEGAAVRDYYSQQIAIVKNGQIT
                     LQPAATSNGLLLLERAETDTSAPFDWHNATVYFVLTDRFENGDPSNDQSYGRHKDGMA
                     EIGTFHGGDLRALINKLDYLQQLGVNALWISAPFEQIHGWVGGGTKGDFPHYAYHGYY
                     TQDWTNLDANMGNEADLRTLVDSAHQRGIRILFDVVMNHTGYATLADMQEYQFGALYL
                     SGDEVKKTLGERWSDWKPAAGQTWHSFNDYINFSDKTGWDKWWGKNWIRTDIGDYDNP
                     GFDDLTMSLAFLPDIKTESTTASGLPVFYKNKTDTHAKVIEGFTPRDYLTHWLSQWVR
                     DYGIDGFRVDTAKHVELPAWQQLKTEASSALREWKKTNPDKALDDKPFWMTGEAWGHG
                     VMQSDYYRHGFDAMINFDYQEQAAKAVDCLAQMDTTWQQMAEKLQGFNVLSYLSSHDT
                     RLFREGGDKAAELLLLAPGAVQIFYGDESSRPFGPTGSDPLQGTRSDMNWQDVSGKSA
                     ANVAHWQKISQFRARHPAIGAGKQTTLSLKQGYGFVREHGDDKVLVIWAGQQ"
     gene            8451..9704
                     /gene="avtA"
                     /locus_tag="JN125_002435"
     CDS             8451..9704
                     /gene="avtA"
                     /locus_tag="JN125_002435"
                     /EC_number="2.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--pyruvate transaminase"
                     /protein_id="HAY8872194.1"
                     /translation="MTFSLFGDKFTRHSGITLLMEDLNDGLRTPGAIMLGGGNPAQIP
                     EMQDYFQTLLTDMLESGKATDALCNYDGPQGKTELLTLLAGMLREKLGWDIEPQNIAL
                     TNGSQSAFFYLFNLFAGRRADGRVKKVLFPLAPEYIGYADAGLEEDLFVSARPNIELL
                     PEGQFKYHVDFEHLHIGEETGMICVSRPTNPTGNVITDEELLKLDALANQHGIPLVID
                     NAYGVPFPGIIFSEARPLWNPNIVLCMSLSKLGLPGSRCGIIIANEKIITAITNMNGI
                     ISLAPGGIGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQETIAIIRRYLPENRCLIHK
                     PEGAIFLWLWFKDLPITTEQLYQRLKARGVLMVPGHNFFPGLDKPWPHTHQCMRMNYV
                     PEPEKIEAGVKILAEEIERAWAESH"
     gene            complement(9855..10328)
                     /locus_tag="JN125_002436"
     CDS             complement(9855..10328)
                     /locus_tag="JN125_002436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HAY8872195.1"
                     /translation="MNRFIIADATKCIGCRTCEVACAVSHQENQDCAALSPDEFISRI
                     RVIKDHSWTTAVACHQCEDAPCANVCHVDAISREHGHIFIEQTRCIGCKSCMLACPFG
                     AMEVVSSRKKARAIKCDLCWHRETGPACVEACPTKALQCMDVEKVQRHRLRQQPV"
     gene            complement(10430..11278)
                     /gene="yiaJ"
                     /locus_tag="JN125_002437"
     CDS             complement(10430..11278)
                     /gene="yiaJ"
                     /locus_tag="JN125_002437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator YiaJ"
                     /protein_id="HAY8872196.1"
                     /translation="MGKEVMGKKENEMAQEKERPAGSQSLFRGLMLIEILSNYPNGCP
                     LAHLSELAGLNKSTVHRLLQGLQSCGYVTTAPAAGSYRLTTKFIAVGQKALSSLNIIH
                     IAAPHLEALNIATGETINFSSREDDHAILIYKLEPTTGMLRTRAYIGQHMPLYCSAMG
                     KIYMAFGHPDYVKSYWENHQHEIQPLTRNTITELPAMFDELAHIRESGAAMDGEENEL
                     GVSCIAVPVFDIHGRVPYAVSISLSTSRLKQVGEKNLLKPLRETAQAISNELGFTVRD
                     DLGAIT"
     gene            11479..12468
                     /gene="yiaK"
                     /locus_tag="JN125_002438"
     CDS             11479..12468
                     /gene="yiaK"
                     /locus_tag="JN125_002438"
                     /EC_number="1.1.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydro-L-gulonate 2-dehydrogenase"
                     /protein_id="HAY8872197.1"
                     /translation="MKVTFEQLKAAFNRVLISRGVDSETADACAEMFARTTESGVYSH
                     GVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELAA
                     DHGIGLVALRNANHWMRGGSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNPLI
                     VAIPSTPITMVDMSMSMFSYGMLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRI
                     LPMGYWKGSGMSIVLDMIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPT
                     RDAKLQRIMDYVTTAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKI"
     gene            12489..12957
                     /locus_tag="JN125_002439"
                     /pseudo
     CDS             12489..12957
                     /locus_tag="JN125_002439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418033.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF386 domain-containing protein"
     gene            13075..13548
                     /gene="yiaM"
                     /locus_tag="JN125_002440"
     CDS             13075..13548
                     /gene="yiaM"
                     /locus_tag="JN125_002440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diketo-L-gulonate TRAP transporter small
                     permease YiaM"
                     /protein_id="HAY8872198.1"
                     /translation="MKKILEAILAINLAVLSCIVFINIILRYGFQTSILSVDELSRYL
                     FVWLTFIGAIVAFMDNAHVQVTFLVEKLSPAWQRRVALVTHSLILFICGALAWGATLK
                     TIQDWSDYSPILGLPIGLMYAACLPTSLVIAFFELRHLYQLITRSNSLTSPPQGA"
     gene            13551..>14534
                     /locus_tag="JN125_002441"
     CDS             13551..>14534
                     /locus_tag="JN125_002441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAP transporter large permease subunit"
                     /protein_id="HAY8872199.1"
                     /translation="MAVLIFLGCLLGGIAIGLPIAWALLLCGAALMFWLDMFDVQIMA
                     QTLVNGADSFSLLAIPFFVLAGEIMNAGGLSKRIVDLPMKLVGHKPGGLGYVGVLAAM
                     IMASLSGSAVADTAAVAALLVPMMRSANYPVNRAAGLIASGGIIAPIIPPSIPFIIFG
                     VSSGLSISKLFMAGIAPGMMMGATLMLTWWWQASRLNLPRQQKATMQEIWHSFVSGIW
                     ALFLSVIIIGGFRSGLFTPTEAGAVAAFYALFVATVIYREMAFATLWHVLIGAAKTTS
                     VVMFLVASAQVSAWLITIAELPMMVSDLLQPLVDSPRLLFIVIMVAILIVGM"
BASE COUNT         3610 a         3600 c         3639 g         3685 t
ORIGIN      
        1 attctactca ccctttgcac ctcacttctg cttaccaacg ttgcggcaca cgccaaagaa
       61 gtcaaaatag gtatggcgat tgatgatcta cgtcttgaac gctggcaaaa agatcgagat
      121 atttttgtga aaaaggctga atctctcggt gcgaaagtat ttgtacagtc tgcaaatggc
      181 aatggagaaa cacaaatgtc gcagattgaa aacatgatta accggggtgt cgatgttctt
      241 gtcattattc cgtataacgg ccaggtatta agtaacgttg taaaagaagc caaacaagaa
      301 ggtattaaag tattagctta cgaccgtatg attaacgatg cggatatcga tttttatatt
      361 tctttcgata acgaaaaagt cggtgaactg caggcaaaag ccctggtcga tattgttccg
      421 caaggtaatt acttcctgat gggcggctcg ccggtagata acaacgccaa gctgttccgc
      481 gccggacaaa tgaaagtgtt aaaaccttac gttgattccg gaaaaattaa agtcgttggt
      541 gaccaatggg ttgatggctg gttaccggaa aacgcgctaa ccgccaataa taacaaaatt
      601 gatgctgtag ttgcctcaaa cgatgccacc gcaggtgggg caattcaggc attaagcgcg
      661 caaggtttat cagggaaagt agcaatttcc ggccaggatg cggatctcgc aggtattaaa
      721 cgtattgctg ccggtacgca aactatgacg gtgtataaac ctattacatt gctggcaaat
      781 actgccgcag aaattgccgt tgaattgggc aatggtcagg agccaaaagc agatacctca
      841 ctgaataatg gcctgaaaga tgtcccctcc cgcctcctga caccgatcga tgtgaataaa
      901 aacaacatca aagatacggt aattaaagac ggattccaca aagagagcga gctgtaagcg
      961 ttacgccccg gcgcggagcg ggggcgtgat ttctctccat gccgcgtgaa tgaattggct
     1021 taggtggagt cgttatgcct tatctacttg aaatgaagaa cattaccaaa accttcggca
     1081 gtgtgaaggc gattgataac gtcagcttgc ggttgaatgc tggcgaaatc gtctcactct
     1141 gtggggaaaa tgggtctggt aaatcaacgc tgatgaaagt gctgtgtggt atttatcccc
     1201 atggctccta cgaaggcgaa attatttttg cgggagaaga gattcaggcg agtcacatcc
     1261 gcgataccga acgcaaaggt atcgccatca ttcaccagga attggccctg gtgaaagaat
     1321 tgaccgtgct ggaaaatatc ttcctgggta acgaaataac ccacaatggc attatggatt
     1381 atgacctgat gacgctacgc tgtcagaagc tgctcgcaca ggtcagttta tccatttcac
     1441 ctgatacccg cgttggcgat ttagggcttg ggcaacaaca actggttgaa attgccaagg
     1501 cacttaataa acaggtgcgc ttgttaattc tcgatgaacc gacagcctca ttaactgagc
     1561 aggaaacgtc ggttttactg gatattattc gcgatctaca acagcacggt atcacctgta
     1621 tttatatttc gcacaaactc aacgaagtca aagcgatttc cgatacgatt tgcgttattc
     1681 gcgacggtca gcacattggt acgcgtgatg ctgccggaat gagtgaagac gatattatca
     1741 ccatgatggt cgggcgagag ttaaccgcgc tttaccctaa tgaaccacat accaccggag
     1801 atgaaatatt acgtattgaa catctgacgg catggcatcc ggttaatcgt catattaaac
     1861 gagttaatga tgtctcgttt tccctgaaac gtggcgaaat actgggtatt gccggactcg
     1921 ttggtgccgg acgtaccgag accattcagt gcctgtttgg cgtgtggccc ggacaatggg
     1981 aaggaaaaat ttatattgat ggcaaacagg tagatattcg taactgtcag caagccatcg
     2041 cccaggggat tgcgatggta cccgaagaca gaaagcgcga cggcatcgtt ccggtaatgg
     2101 cggttggtaa aaatattacc ctcgccgcac tcaataaatt taccggtggc attagccagc
     2161 ttgatgacgc ggcagagcaa aaatgtattc tggaatcaat ccagcaactc aaagttaaaa
     2221 cgtcgtcccc cgatcttgct attggacgtt tgagcggcgg caatcagcaa aaagcgatcc
     2281 tcgcccgctg tctgttactc aacccgcgca ttctcattct tgatgaacct accaggggta
     2341 ttgatattgg cgtgaaatat gagatctaca aattaattaa ccaactcgtc cagcagggta
     2401 ttgccgttat tgtcatctct tccgaattac ctgaagtgct cggccttagc gatcgtgtac
     2461 tggtgatgca tgaagggaaa ctaaaagcca acctgataaa tcataacctg actcaggagc
     2521 aggtgatgga agccgcattg aggagcgaac atcatgtcga aaagcaatcc gtctgaagtg
     2581 aaattggccg taccgacatc cggtggcttt tccgggctga aatcactgaa tttgcaggtc
     2641 ttcgtgatga ttgcagctat catcgcaatc atgctgttct ttacctggac caccgatggt
     2701 gcctacttaa gcgcccgtaa cgtctccaac ctgttacgcc agaccgcgat taccggcatc
     2761 ctcgcggtag gaatggtgtt cgtcataatt tctgctgaaa tcgacctttc cgtcggctca
     2821 atgatggggc tattaggtgg cgtcgcggcg atttgtgacg tctggttagg ctggcctttg
     2881 ccacttacca tcattgtgac gttggttctg ggactgcttc tcggtgcgtg gaacggatgg
     2941 tgggtcgcgt accgtaaagt cccttcattt attgtcaccc tcgcgggcat gttggcattt
     3001 cgcggcatac tcattggcat caccaacggc acgactgtat cccccaccag cgccgcgatg
     3061 tcacaaattg ggcaaagcta tctccccgcc agtaccggct tcatcattgg cgcgcttggc
     3121 ttaatggctt ttgttggttg gcaatggcgc ggaagaatgc gccgtcaggc tttgggttta
     3181 cagtctccgg cctctaccgc agtagtcggt cgccaggctt taaccgctat catcgtatta
     3241 ggcgcaatct ggctgttgaa tgattaccgt ggcgttccca ctcctgttct gctgctgacg
     3301 ttgctgttac tcggcggaat gtttatggca acgcggacgg catttggacg acgcatttat
     3361 gccatcggcg gcaatctgga agcagcacgt ctctccggga ttaacgttga acgcaccaaa
     3421 cttgccgtgt tcgcgattaa cggattaatg gtagccatcg ccggattaat ccttagttct
     3481 cgacttggcg ctggttcacc ttctgcggga aatatcgccg aactggacgc tattgcagca
     3541 tgcgtgattg gcggcaccag cctggctggc ggtgtgggaa gcgttgccgg agcagtaatg
     3601 ggggcattta tcatggcttc actggataac ggcatgagta tgatggatgt accgaccttc
     3661 tggcagtata tcgttaaagg tgcgattctg ttgctggcag tatggatgga ctccgcaacc
     3721 aaacgccgtt cttgattttg ataaaaattt tctcaaagcc ggttacgtat taccggtttt
     3781 gagtttttgc atgattcagc aggaaaagaa ccatgtttac taaacgtcac cgcatcacat
     3841 tactgttcaa tgccaataaa gcctatgacc ggcaggtagt agaaggcgta ggggaatatt
     3901 tacaggcgtc acaatcagaa tgggatattt tcattgaaga agatttccgc gcccgcattg
     3961 ataaaatcaa ggactggtta ggagatggcg tcattgccga cttcgacgac aaacaaatcg
     4021 agcaagcgct ggctgatgtc gacgtcccca ttgttggggt tggcggctcg tatcaccttg
     4081 cagaaagtta cccacccgtt cattacattg ccaccgataa ctatgcgctg gttgaaagcg
     4141 catttttgca tttaaaagag aaaggcgtta accgctttgc tttttatggt cttccggaat
     4201 caagcggcaa acgttgggcc actgaacgcg aatatgcatt tcgtcagctt gtcgccgaag
     4261 aaaagtatcg cggagtggtt tatcaggggt tagaaaccgc gccagagaac tggcaacacg
     4321 cgcaaaatcg gctggcagac tggctacaaa cgctgccacc gcaaaccggg attattgccg
     4381 ttactgacgc ccgggcgcgg catattctgc aagtatgtga acatctacac attcccgtac
     4441 cggaaaaatt atgcgtgatt ggcatcgaca acgaagaact gacccgctat ctgtcgcgtg
     4501 tcgccctttc ttcggtcgct cagggcgcgc ggcaaatggg ctatcaggcg gcaaaactgt
     4561 tgcatcgatt attagataaa gaagaaatgc cgctacagcg aattttggtc ccacctgttc
     4621 gcgtcattga acggcgctca acagattatc gctcgctgac cgatcccgcc gttattcagg
     4681 ccatgcatta cattcgtaat cacgcctgta aagggattaa agtggatcag gtactggatg
     4741 cggtcgggat ctcgcgctcc aatcttgaga agcgttttaa agaagaggtg ggtgaaacca
     4801 tccatgccat gattcatgcc gagaagctgg agaaagcgcg cagtctgctg atttcaacca
     4861 ccttgtcgat caatgagata tcgcaaatgt gcggttatcc atcgctgcaa tatttctact
     4921 ctgtttttaa aaaagcatat gacacaacgc caaaagagta tcgcgatgta aatagcgagg
     4981 tcatgttgta gcgatgatga gaattgtcgg cgtcacatca gggaactcag cacagccacc
     5041 tgatgcgagc aaaagcctta tccgaccgac aaatcagata aggctcaagg aaatgcaatt
     5101 acatatgcgc cgcgattaac cgttggttat cctggtacat tgcgaacagg tagttattat
     5161 aactcttccc tttggtcgag tagcccttca gcttgtgaat catcgctgtg gcagtcactt
     5221 cctgatccgc tttacgcagc tgcgcacgcg atttacggaa cgaagagtaa gccgggtgcg
     5281 tattcaggtt agtgacatag gcgctcaccg attctttgac agaactaaac tgtgagtacc
     5341 ctttcacttt acccggcgca ttggtacaac gtcctttcat gcatttcatg ccgaacagat
     5401 tgttattgtt gcgcgccagc ttcgacgttc cccaaccgct ttctgctgca gccatcgtcg
     5461 ccaccatact ggtagggata atgtctacgc gttcaagcaa ggtattccac gggatttttc
     5521 gcgtattacc agaccacttc accttgtagc gtttggcgat gtctttcaga cgcgcacgct
     5581 cagcaggtga ccattggccc tgatactgtt ttgaaatcag ccagttacgt tctgcagtaa
     5641 tggctgcatt ttggctggta atgtaaggca ttacggtccg gagaaacgcc tttttccttg
     5701 gtgttccgga agggtatttt cgcaaatcag gaagtgaact actctttgca ctattgcgag
     5761 aatactcttg tttactgctt acctgtttat tactagcttt agttaagtgg gacttttgac
     5821 tcgctgttgt tgtgtgcgtc ttcgctaaca cctcactcga aaacaccaga gtgagtaaca
     5881 taagaatcat cgccccatat cgtcgtatgg gagtcaaaat catcaggtct cctggtcgga
     5941 tttaatcatt ccaacacctt atatttttca caaatttgag agttgaatct caaatcatat
     6001 caaaaatagc tgtcaagagc accccaagga atagtccaaa tctgaaacta tgtcacgagt
     6061 taacgattca gattggcgct aaatcgcaga aaatgtgggg tttatcgcaa aattcagccg
     6121 ttttttgcgc gcgatcgctc acccttgctt ctcatcctgt ggacttaccg ctcagggatg
     6181 agttttgtct ggcttatcgc tggcaaactg tctgaaatcg cagcaataag gactcatcca
     6241 ccatgaaact cgcctcctgt tttctgacac tccttcctgg cttcgccgtt gccgccagct
     6301 ggacttctcc ggggttccct gtctttagcg aacagggaac gggaacattt gtcagccacg
     6361 cgcagttgcc caaaggtacg cgtccactca cgctaaattt tgaccaacag tgctggcagc
     6421 ctgcagatgc gataaaactc aatcagatgc tttccctgca accttatagc aacacgccgc
     6481 ctcaatggcg attgttcagg gacggcaaat atacgctgca aatagacacc cgctccggta
     6541 cgccaacatt gatgatttcc atccagaacg ccgccgaagc ggtagcaaac ctggtccgtg
     6601 aatgcccgaa atgggatgga ttaccgctca cgctggatgt cagcgccact ttcccggaag
     6661 gagccgccgt acgggattat tacagccagc aaattgcgat agtgaagaac ggtcaaataa
     6721 cgttacaacc cgctgctacc agcaacggtt tactcctgct ggaacgggca gaaactgaca
     6781 catccgcccc tttcgactgg cataacgcca cggtttactt tgtgctgaca gatcgtttcg
     6841 aaaacggcga tcccagtaat gaccagagtt acggacgtca taaagacggt atggcggaaa
     6901 ttggcacttt tcacggcggc gatttacgcg ccctgatcaa taaactggat tacctccagc
     6961 agttgggcgt taatgcttta tggataagcg ccccatttga gcaaattcac ggctgggtcg
     7021 gcggcggtac aaaaggcgat ttcccgcatt atgcctacca cggttattac acacaggact
     7081 ggacgaatct tgatgccaat atgggcaacg aagccgatct acggacgctg gttgatagcg
     7141 cacatcagcg cggtattcgt attctctttg atgtcgtgat gaaccacacc ggctatgcca
     7201 cgctggcgga tatgcaggag tatcagtttg gtgcgttata tctttctggt gacgaagtga
     7261 aaaaaacgct gggtgaacgc tggagcgact ggaaacctgc cgccgggcaa acctggcata
     7321 gctttaacga ttacattaat ttcagcgaca aaacaggctg ggataaatgg tggggaaaaa
     7381 actggatcag aacggatatc ggcgattacg acaatcctgg attcgacgat ctcactatgt
     7441 cgctggcctt tttgccggat atcaaaaccg aatcaactac cgcttctggt ctgccggtgt
     7501 tctataaaaa caaaacggat actcacgcta aagtcatcga aggctttaca cctcgcgatt
     7561 acttaaccca ctggttaagt cagtgggtcc gcgactatgg gattgatggt tttcgggtcg
     7621 ataccgccaa acatgttgag ttgcccgcct ggcagcaact gaaaaccgaa gccagctccg
     7681 cgcttcgcga atggaaaaaa actaaccccg acaaagcatt agatgacaaa cctttctgga
     7741 tgaccggtga agcctggggc cacggcgtga tgcaaagtga ctactatcgc cacggcttcg
     7801 atgcgatgat caatttcgat tatcaggagc aggcggcgaa agcagtcgat tgtctggcgc
     7861 agatggatac gacctggcag caaatggcgg agaaattgca gggtttcaac gtgttgagct
     7921 acctctcgtc gcatgatacc cgtctgttcc gtgaaggggg cgacaaagca gcagagttat
     7981 tactattagc gccaggcgcg gtacaaatct tttatggcga tgaatcctcg cgtccgttcg
     8041 gtcctacagg ttctgatccg ctgcaaggta cacgttcgga tatgaactgg caggatgtta
     8101 gcggtaaatc tgccgccaac gtcgcgcact ggcagaaaat cagccagttc cgcgcccgcc
     8161 atcccgcaat tggcgcgggc aaacaaacga cactttcgct gaagcagggc tacggctttg
     8221 ttcgtgagca tggcgacgat aaagtgctgg tcatctgggc tgggcaacag tgacttttcc
     8281 ggcttcccgt tcatcagtac ctcgggaagc cgccaaccag gataaaatgt cagccctaat
     8341 cagcgttgca ggataaagca ccgctcactc ttcaacagac cgatttgcac cccagcaaat
     8401 gtagcgttat tgttaccttc cttgctacag agttcgacag atatcccgct atgacattct
     8461 ccctttttgg tgacaaattt acccgccact ccggcattac gctgctgatg gaagatctga
     8521 acgacggttt acgcacgcct ggcgcgatta tgctcggcgg cggtaatccg gcgcagatcc
     8581 cggaaatgca ggactacttc cagacgctac tcaccgacat gctggaaagt ggcaaagcga
     8641 ctgatgcact gtgtaactac gacggtccac aggggaaaac ggagctactc acactgcttg
     8701 ccggaatgct gcgcgagaag ttgggttggg atatcgaacc acagaatatt gcactaacaa
     8761 acggcagcca gagcgcgttt ttctacttat ttaacctgtt tgccggacgc cgtgccgatg
     8821 gtcgggtcaa aaaagtgctg ttcccgctgg caccggaata cattggctac gctgacgccg
     8881 gactggaaga agatctgttt gtctctgcgc gtccgaatat tgaactgctg ccggaaggcc
     8941 agtttaaata ccacgtcgat tttgagcatc tgcatattgg cgaagaaacc gggatgattt
     9001 gcgtctcccg gccgacgaat ccaacaggca atgtgattac tgacgaagag ttgctgaagc
     9061 ttgacgcgct ggcgaatcaa cacggcattc cgctggtgat tgataacgct tatggcgtcc
     9121 cgttcccggg tatcatcttc agtgaagcgc gcccgctatg gaatccgaat atcgtgctgt
     9181 gcatgagtct ttccaagctg gggctgcctg gctcccgctg cggcattatc atcgccaatg
     9241 aaaaaatcat cactgccatc accaatatga acggcattat cagcctggca cctggcggta
     9301 ttggtccggc gatgatgtgt gaaatgatta agcgtaacga tctgctgcgc ctgtctgaaa
     9361 cagtcatcaa accgttttac taccagcgtg ttcaggaaac tatcgccatc attcgccgct
     9421 atttaccgga aaatcgctgc ctgattcata aaccggaagg agccattttc ctctggctat
     9481 ggtttaagga tttgcccatt acgaccgagc agctctatca gcgcctgaaa gcacgcggcg
     9541 tgctgatggt gccggggcac aacttcttcc cgggactgga taaaccgtgg ccgcatacgc
     9601 atcaatgtat gcgcatgaac tacgtaccag agccggagaa aattgaggcg ggggtgaaga
     9661 ttctggcgga agagatagaa agagcctggg cagaaagtca ctaaaaattg cctgatgcgc
     9721 tacgcttatc aggcctacat gatttctgca atatattgaa tttggaagaa tttgtaggcc
     9781 ggataaggcg tttacgccgc atctggcata aacaaaacgc actattccgg cgttgagaaa
     9841 cgccggaaaa cgtttcaaac aggctgctgc cgtagccgat gccgctgtac tttctcgaca
     9901 tccatgcact gcaacgcctt tgtcgggcag gcttcaacac aggccggccc cgtctcccga
     9961 tgccagcaca gatcgcactt aatcgccctc gcctttttgc gcgaagaaac gacctccatc
    10021 gcaccaaacg ggcaagccag catacagctt ttacagccaa tgcaacgtgt ttgttcaatg
    10081 aaaatatgcc catgttcgcg gcttatcgcg tcaacatggc agacattcgc gcacggtgca
    10141 tcttcacact gatgacaggc tactgccgtg gtccagctgt ggtctttaat gacacgaata
    10201 cgggaaataa actcgtctgg tgacaacgca gcgcaatcct gattctcctg atgcgacact
    10261 gcgcaagcca cttcacaggt acggcaaccg atacatttcg tcgcatccgc aataataaac
    10321 cggttcatga tcactccttt gcactaaaac agcagagtgc cagagagcgc gtccctactg
    10381 ctttgatcca acgaaggaaa tgttaaagtt ttggcacttg tccaaagcgt tatgtgatcg
    10441 cgcccaggtc atccctgaca gtaaatccca gttcattaga aatagcctgc gcggtttcac
    10501 gcagtggttt caggagattt ttctctccca cctgtttcag acgtgatgtc gaaagcgaaa
    10561 tcgacacggc gtacggcacc cgcccatgaa tatcaaacac cggaacagca atacaggaga
    10621 cgccgagttc gttttcttct ccgtccatcg ccgctccgct ttcacgaatg tgcgccagtt
    10681 cgtcgaacat cgcgggcagc tcggtaatgg tattgcgggt taacggctgg atctcatgct
    10741 gatggttttc ccagtatgac ttcacgtagt ccgggtgacc aaacgccatg tagatcttgc
    10801 ccattgcgga acagtagagc ggcatatgct ggccaatata ggcacgggtt cgcagcatcc
    10861 cggttgtggg ttccagctta taaatcaaaa tagcgtgatc gtcttcgcgg ctggagaagt
    10921 taatggtttc accagtggcg atgttcagtg cctcaagatg cggagcggcg atatgaatga
    10981 tattcagcga agacagcgcc ttctgcccga cggcaataaa tttggtagtc aggcggtaac
    11041 tccctgcggc gggcgcggtg gtcacatagc cgcaggactg taatccctgc aataagcgat
    11101 ggacggtact cttatttaaa ccagccagct ccgaaagatg cgccaacgga caaccgtttg
    11161 gatagttgct caaaatctca atcagcatca acccgcgaaa cagactctgg cttccggctg
    11221 gacgctcttt ttcctgcgcc atctcgttct ctttttttcc catcacttct ttccccattt
    11281 tgtcgcgtcc tgatggtagc gcaaagtgtg ccgtagttca cgatctcgac agataattta
    11341 taaccacttg atttttatgt cttttgaaat tcatcaatca gatttctttg ttaaaaagtg
    11401 atcaatatat ttgaaatcaa gtttcgcata ttgaaatttt aagccaaaaa agcgatcaaa
    11461 aaaacaagga agcctgggat gaaagtgaca tttgagcagt taaaagcagc ctttaatcgg
    11521 gtcttaattt cacgcggcgt tgacagcgaa acggctgacg cctgtgcaga gatgttcgcc
    11581 cgcaccaccg aatccggcgt ttattctcac ggcgttaatc gtttccctcg tttcattcaa
    11641 caactggaaa acggcgatat cattcctgat gcccaaccca aacgtataac cagcctcggc
    11701 gcaattgaac agtgggatgc ccagcgttcg atcggcaacc tgacggcgaa aaagatgatg
    11761 gatcgcgcca ttgaactggc tgccgatcac ggtattggtc tggtggcact tcgtaatgcc
    11821 aaccactgga tgcgcggcgg cagctacggc tggcaggcgg cggaaaaagg ctatattggc
    11881 atttgctgga ccaactccat cgccgtaatg ccgccgtggg gcgcaaaaga gtgtcgcatt
    11941 ggcactaacc cgctgatcgt cgccattcct tccacgccga tcaccatggt cgatatgtcg
    12001 atgtcgatgt tctcttacgg catgttagaa gttaaccgcc tggcgggccg tcagctcccg
    12061 gtcgatggtg gctttgatga tgagggcaat ttgaccaaag aacctggcgt tatcgagaag
    12121 aatcgccgca ttttgccgat gggctactgg aaaggttctg gcatgtcgat tgtgctggat
    12181 atgatcgcta ctctcctttc cgacggcgca tcggttgccg aagtcaccca ggacaacagc
    12241 gacgaatacg gcatttcaca aatttttatt gccattgaag tggacaagct tatcgacggt
    12301 cccacccgcg atgccaagct gcaacgcatc atggattacg ttactaccgc tgaacgcgct
    12361 gacgaaaacc aggccatccg cttacccggc cacgaattta ctaccctgct ggccgaaaac
    12421 cgccgtaacg gcatcactgt tgatgacagc gtgtgggcca aaatctaggc gttatgagga
    12481 gataagtcat gatttttgga catatcgcgc agcccaatcc gtgccgtttg cccgccgcca
    12541 ttgaaaaggc gctcgatttt ctgcgcgcta ccaacttcaa cgtcctggag ccgggcgttg
    12601 tcgaaatcga cggcaagaat atttatgcgc aaattatcga tttaaccaca cgcgaagcgg
    12661 tggaaaactg tccggaagtg catcgtcggt atatcgatat tcagtttctg gcgtggggtc
    12721 aagagaaaat cggcattgct attgatacag gaaataataa agtcagcgaa tcactattag
    12781 agcagcgcga tattattttt tatcatgtca gtgaacatga atcatttata gaaatgatac
    12841 cgggcagcta cgctattttc ttcccgcagg atgttcaccg accaggttgt attctgcaaa
    12901 caggcctctg agatacgaaa aattgtggtt aaagtcgcat taacagcgct gaattaatca
    12961 aataatcgtc tacgccagaa cgactgggta atgttattgc tctaactata ttaataattt
    13021 aggttgctgc acatgcaact tgaattatga cagacatagc ctcaaggaat agctatgaaa
    13081 aaaatacttg aagcaatact ggcgattaat ctcgccgtac tttcctgtat tgtgtttata
    13141 aacattattt taagatatgg ttttcagaca agcattttat ctgtagatga attgtcacgt
    13201 tatttatttg tctggttaac atttattggc gcgattgtgg cttttatgga taacgcccac
    13261 gttcaggtca cctttctggt ggagaaactc tcccccgcat ggcaacgacg agtcgctctg
    13321 gttacccatt ccttaatctt atttatttgt ggcgcactgg cctggggcgc aacgctaaaa
    13381 acaattcagg actggagcga ttattcaccg atcctcggtt tgcccatcgg cctgatgtat
    13441 gccgcttgtc tgcccaccag cctcgttatc gcattctttg aactgcgtca tttatatcaa
    13501 ctcatcacgc gtagcaattc tctaacgtcg ccaccgcaag gagcttaatc atggctgtgc
    13561 tgatttttct gggctgtctg ttgggtggta ttgctatcgg tttgcctatt gcctgggcac
    13621 tgttgttgtg cggggcggcg ttaatgttct ggctggacat gtttgatgtc cagatcatgg
    13681 cacaaacgct ggtgaacgga gccgatagct tctccctgct ggcgattccg ttctttgtgc
    13741 tggcgggtga aatcatgaat gcgggcggct tgtcaaaacg cattgttgac ctgccgatga
    13801 aactggtggg gcataaacca ggcgggctgg gctacgtcgg cgtgctggca gctatgatta
    13861 tggcgagcct ttctggttct gccgttgcgg ataccgccgc cgttgccgct ctactggtgc
    13921 cgatgatgcg cagcgccaac tacccggtca accgggcggc ggggctgatt gcctctggcg
    13981 gcattatcgc gccaattatt cccccttcca ttccgtttat tatcttcggc gtttccagcg
    14041 gattatccat cagtaagctg tttatggcgg gcattgcccc tggcatgatg atgggcgcaa
    14101 cgctgatgct tacctggtgg tggcaggcca gtcgccttaa tttaccccgc cagcaaaaag
    14161 caacgatgca ggaaatctgg cactcttttg tctccggtat ctgggctctg tttctttcag
    14221 tcatcattat tggcgggttt cgctccggtc tgtttacccc taccgaagcc ggggccgttg
    14281 ctgctttcta tgcgctgttt gtcgccacag ttatttaccg tgaaatggcc ttcgccacac
    14341 tttggcatgt actcattggc gcggcgaaaa ccacctcagt ggttatgttt ctggtggcct
    14401 cggcacaagt ttccgcctgg ctgattacca ttgctgaact gccgatgatg gtttctgatt
    14461 tactgcaacc gttggtcgat tcaccgcgtc tgctgtttat cgtcattatg gtggctatcc
    14521 tgattgtcgg catg
//
LOCUS       DADMHM010000094        14467 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.095, whole genome shotgun sequence.
ACCESSION   DADMHM010000094 DADMHM010000000
VERSION     DADMHM010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14467)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14467)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14467
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.095"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..476)
                     /gene="dpiB"
                     /locus_tag="JN125_002442"
                     /gene_synonym="citA"
     CDS             complement(<1..476)
                     /gene="dpiB"
                     /locus_tag="JN125_002442"
                     /gene_synonym="citA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415152.1"
                     /note="regulates the expression of citrate fermentation
                     genes; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase DpiB"
                     /protein_id="HAY8872200.1"
                     /translation="MLQLNENKQFAFFQRLAFPLRIFLLILVFSIFVIAALAQYFTAS
                     FEDYLTLHVRDMAMNQAKIIASNDSVISAVKTRDYKRLATIANKLQRDTDFDYVVIGD
                     RHSIRLYHPNPEKIGYPMQFTKQGALEKGESYFITGKGSMGMAMRAKTPIFDDDGKV"
     gene            855..1913
                     /gene="citC"
                     /locus_tag="JN125_002443"
     CDS             855..1913
                     /gene="citC"
                     /locus_tag="JN125_002443"
                     /EC_number="6.2.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415151.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="[citrate (pro-3S)-lyase] ligase"
                     /protein_id="HAY8872201.1"
                     /translation="MFGNDIFTRVKRSENKKMAEIAQFLHENDLSVDTTVEVFITVTH
                     DEKLIACGGIAGNIIKCVAISESVRGEGLALTLATELINLAYERHSTHLFIYTKTEYE
                     ALFRQCGFSTLTSVPGVMVLMENSATRLKRYAESLKKFRHPGNKIGCIVMNANPFTNG
                     HRYLIQQAAAQCDWLHLFLVKEDSSRFPYEDRLDLVLKGTADIPRLTVHRGSEYIISR
                     ATFPCYFIKEQSVINHCYTEIDLKIFRQYLAPALGVTHRFVGTEPFCRVTAQYNQDMR
                     YWLKTPTISAPPIELVEIERLRYQEMPISASRVRQLLAKNDLTAIAPLVPAVTLHYLQ
                     NLLEHSRQDAAARQKPPA"
     gene            1928..2224
                     /gene="citD"
                     /locus_tag="JN125_002444"
     CDS             1928..2224
                     /gene="citD"
                     /locus_tag="JN125_002444"
                     /EC_number="4.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate lyase acyl carrier protein"
                     /protein_id="HAY8872202.1"
                     /translation="MKINQPAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGDA
                     IRTTILDVLAHYNVRGVQLNVDDKGTLDCILRARLEALLARASGIPTLPWEDCQ"
     gene            2221..3129
                     /gene="citE"
                     /locus_tag="JN125_002445"
     CDS             2221..3129
                     /gene="citE"
                     /locus_tag="JN125_002445"
                     /EC_number="4.1.3.34"
                     /EC_number="4.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415149.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate (pro-3S)-lyase subunit beta"
                     /protein_id="HAY8872203.1"
                     /translation="MISASLQQRKTRTRRSMLFVPGANAAMVSNSFIYPADALMFDLE
                     DSVALREKDTARRMVYHALQHPLYRDIETIVRVNALDSEWGVNDLEAVVRGGADVVRL
                     PKTDTAQDVLDIEKEILRIEKACGREPGSTGLLAAIESPLGITRAVEIAHASERLIGI
                     ALGAEDYVRNLRTERSPEGTELLFARCSILQAARSAGIQAFDTVYSDANNEAGFLQEA
                     AHIKQLGFDGKSLINPRQIDLLHNLYAPTQKEVDHARRVVEAAEAAAREGLGVVSLNG
                     KMVDGPVIDRARLVLSRAELSGIREE"
     gene            3140..4672
                     /gene="citF"
                     /locus_tag="JN125_002446"
     CDS             3140..4672
                     /gene="citF"
                     /locus_tag="JN125_002446"
                     /EC_number="2.8.3.10"
                     /EC_number="4.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate lyase subunit alpha"
                     /protein_id="HAY8872204.1"
                     /translation="MTQKIEQSQRQERVAAWNRRAECDLAAFQNSPKQTYQAEKARDR
                     KLCANLEEAIHRSGLQDGMTVSFHHAFRGGDLTVNMVMGVIAKMGFKNLTLASSSLSD
                     CHAPLVEHIRQGVVTRIYTSGLRGPLAEETSRGLLAEPVQIHSHGGRVHLVQSGELNI
                     DVAFLGVPSCDEFGNANGYTGKACCGSLGYAMVDADNAKQVVMLTEELLPYPHNPASI
                     EQDQVDLIVKVDRVGDAAKIGAGATRMTTNPRELLIARSAADVIVNSGYFKEGFSMQT
                     GTGGASLAVTRFLEDKMRSRDIRADFALGGITATMVDLHEKGLIRKLLDVQSFDSHAA
                     QSLARNPNHIEISANQYANWGSKGASVDRLYVVVLSALEIDTQFNVNVLTGSDGVLRG
                     ASGGHCDTAIASALSIIVAPLVRGRIPTLVDNVLTCITPGSSVDILVTDHGIAVNPAR
                     PELAERLPEAGIKVVSIEWLRERARLLTGEPQPIEFTDRVVAVVRYRDGSVIDVVHQV
                     KE"
     gene            4676..5227
                     /gene="citX"
                     /locus_tag="JN125_002447"
     CDS             4676..5227
                     /gene="citX"
                     /locus_tag="JN125_002447"
                     /EC_number="2.7.7.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate lyase holo-[acyl-carrier protein]
                     synthase"
                     /protein_id="HAY8872205.1"
                     /translation="MHLLPELASHHAVSIPELLVSRDERQARQHVWLKRHPVPLVSFT
                     VVAPGPIKDSEVTRRIFNHGVTALRALAAKQGWQIQEQAALVSASGPEGMLSIAAPAR
                     DLKLATIELEHSHPLGRLWDIDVLTPEGEILSRRDYSLPPRRCLLCEQSAAVCARGKT
                     HQLTDLLNRMEALLNDVDACNVN"
     gene            5202..6080
                     /gene="citG"
                     /locus_tag="JN125_002448"
     CDS             5202..6080
                     /gene="citG"
                     /locus_tag="JN125_002448"
                     /EC_number="2.4.2.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triphosphoribosyl-dephospho-CoA synthase CitG"
                     /protein_id="HAY8872206.1"
                     /translation="MSMPATSTKTTKLATSLIDEYALLGWRAMLTEVNLSPKPGLVDR
                     INCGAHKDMALEDFHRSALAIQGWLPRFIEFGACSAEMAPEAVLHGLRPIGMACEGDM
                     FRATAGVNTHKGSIFSLGLLCAAIGRLLQLNQSLTPTTVCSTAASFCRGLTDRELRTN
                     NSQLTAGQRLYQQLALTGARGEAEAGYPLVINHALPHYLTLLDQGLDPELALLDTLLL
                     LMAINGDTNVASRGGEGGLRWLQREAQTLLQKGGIRTLADLDYLRQFDRECIERNLSP
                     GGSADLLILTWFLAQI"
     gene            6131..7594
                     /gene="citT"
                     /locus_tag="JN125_002449"
                     /pseudo
     CDS             6131..7594
                     /gene="citT"
                     /locus_tag="JN125_002449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308678.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="citrate/succinate antiporter CitT"
     gene            7705..8511
                     /gene="rna"
                     /locus_tag="JN125_002450"
     CDS             7705..8511
                     /gene="rna"
                     /locus_tag="JN125_002450"
                     /EC_number="4.6.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease I"
                     /protein_id="HAY8872207.1"
                     /translation="MKAFWRNAALLAVSLLPFSSANAVALQTKQYGDFDRYVLALSWQ
                     TGFCQSQHDRNRNERDECRLQTETTNKADFLTVHGLWPGLPKSVAARGVDERRWMRFG
                     CATRPIPNLPEAHASRMCSSPETGLSLETAAKLSEVMPGAGGRSCLERYEYAKHGACF
                     GFDPDAYFGTMVRLNQEIKESEAGKFLADNYGKTVSRRDFDAAFAKSWGKENVKAVKL
                     TCQGNPAYLTEIQISIKADAINAPLSANSFLPQPHPGNCGKTFVIDKVGY"
     gene            8741..9151
                     /gene="rnk"
                     /locus_tag="JN125_002451"
     CDS             8741..9151
                     /gene="rnk"
                     /locus_tag="JN125_002451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside diphosphate kinase regulator"
                     /protein_id="HAY8872208.1"
                     /translation="MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMC
                     SPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLR
                     VGDSIHWELPGGVATHLEVLELEYQPEAAGDYLL"
     gene            complement(9382..10620)
                     /locus_tag="JN125_002452"
                     /pseudo
     CDS             complement(9382..10620)
                     /locus_tag="JN125_002452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308674.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-dependent formaldehyde
                     dehydrogenase"
     gene            10841..11269
                     /gene="uspG"
                     /locus_tag="JN125_002453"
     CDS             10841..11269
                     /gene="uspG"
                     /locus_tag="JN125_002453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspG"
                     /protein_id="HAY8872209.1"
                     /translation="MYKTIIMPVDVFEMELSDKAVRHAEFLTQDDGVIHLLHVLPGSA
                     SLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTIDPSRIKQHVRFGSVRDEVNELAE
                     ELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVLVVR"
     gene            complement(11390..12955)
                     /gene="ahpF"
                     /locus_tag="JN125_002454"
     CDS             complement(11390..12955)
                     /gene="ahpF"
                     /locus_tag="JN125_002454"
                     /EC_number="1.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415139.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl hydroperoxide reductase subunit F"
                     /protein_id="HAY8872210.1"
                     /translation="MLDTNMKTQLKAYLEKLTKPVELIATLDDSAKSAEIKELLAEIA
                     ELSDKVTFKEDNSLPVRKPSFLITNPGSNQGPRFAGSPLGHEFTSLVLALLWTGGHPS
                     KEAQSLLEQIRHIDGDFEFETYYSLSCHNCPDVVQALNLMSVLNPRIKHTAIDGGTFQ
                     NEITDRNVMGVPAVFVNGKEFGQGRMTLTEIVAKIDTGAEKRAAEELNKRDAYDVLIV
                     GSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVH
                     VDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGE
                     DQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA
                     DQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG
                     LLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQIIIATGEGAKAS
                     LSAFDYLIRTKTA"
     gene            complement(13126..13689)
                     /gene="ahpC"
                     /locus_tag="JN125_002455"
     CDS             complement(13126..13689)
                     /gene="ahpC"
                     /locus_tag="JN125_002455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003858764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkyl hydroperoxide reductase subunit C"
                     /protein_id="HAY8872211.1"
                     /translation="MSLINTKIKPFKNQAFKNGEFIEITEKDTEGRWSVFFFYPADFT
                     FVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTG
                     ALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAS
                     HPGEVCPAKWKEGEATLAPSLDLVGKI"
     gene            14001..>14467
                     /gene="dsbG"
                     /locus_tag="JN125_002456"
     CDS             14001..>14467
                     /gene="dsbG"
                     /locus_tag="JN125_002456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706462.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbG"
                     /protein_id="HAY8872212.1"
                     /translation="MTVIGYAFYSTFALTEKDKLMLKKILLLALLPAIAFAEELPAPV
                     KAIEKQGITIIKTFDAPGGMKGYLGKYQDMGVTIYLTPDGKHAISGYMYNEKGENLSN
                     TLIEKEIYAPAGREMWQRMEQSHWLLDGKKDAPVIVYVFADPFCPYCKQFWQQA"
BASE COUNT         3465 a         3815 c         3576 g         3611 t
ORIGIN      
        1 acttttccat cgtcatcaaa gattggcgtt ttggcgcgca tcgccatccc cattgaccct
       61 ttcccggtaa tgaagtagct ctcccctttc tccagcgcgc cctgtttggt gaactgcata
      121 ggataaccaa ttttctccgg attaggatgg taaaggcgga tcgagtgccg gtcgccaatc
      181 accacataat caaaatcggt atctctttgt aatttgttag cgatggtcgc cagccgtttg
      241 tagtcacgcg ttttcaccgc agagatgaca ctgtcattgg aggcaataat tttcgcctga
      301 ttcattgcca tgtcgcgtac atgaagcgtt aaatagtcct caaaactggc cgtaaaatat
      361 tgcgccaagg ctgcaatgac aaatattgag aacaccagaa tcagcaaaaa gatacgcagc
      421 ggaaatgcca gtctttggaa aaatgcaaac tgtttattct cgttaagctg caacattgtt
      481 ttccttgcgg gttgtcccga gcctctttga cagatgtaat taaaatgttg aatcaaaata
      541 catagatatt aattatgatc gttgcaaatt ttattcatta aatcaattaa atcacttaaa
      601 cctgcagatc atttcgtaat tacattaatt aaaaaactta aaccattaaa taaataaaaa
      661 accactaacc ctatgtgaaa taaatcaaaa tttcacgcca aaatactcct taggatgtat
      721 agcgaaagga gaaaaagata tacctcgatc accccccttt ctcccaagtg aaaataaaag
      781 gttatcagtt tgcaacattg aacaacattc gttgcaaatc gataacaaca tgcaccttca
      841 ggatactatt tattatgttc ggcaatgata ttttcacccg cgtaaaacgt tcagaaaata
      901 aaaaaatggc ggaaatcgcc caattcctgc atgaaaatga tttgagcgtt gacaccacag
      961 tcgaagtatt tattaccgta acccacgatg aaaagcttat cgcgtgcggt ggaattgccg
     1021 gaaatattat taaatgcgtt gctatcagtg aatccgttcg cggtgaagga ctggcgctga
     1081 cattagccac tgaactgata aacctcgcct atgagcggca cagcacgcat ctgtttattt
     1141 ataccaaaac cgaatacgag gcgctgttcc gccagtgcgg tttttccacg ctgaccagcg
     1201 tacccggcgt gatggtgctg atggaaaaca gcgccacgcg actgaaacgc tatgccgaat
     1261 cgctgaaaaa atttcgtcat ccagggaaca agattggctg cattgtgatg aacgccaatc
     1321 cctttacgaa tggtcaccgt tatctgattc aacaagctgc ggcacagtgc gactggttgc
     1381 atctgttttt agtcaaagaa gattcttcac gcttccccta tgaagaccgg ctggatctgg
     1441 tgttaaaagg caccgccgat attccacgcc tgactgtgca tcgcggctcc gaatacatca
     1501 tctcccgcgc tacgttccct tgctacttca ttaaagaaca gagcgtcatt aaccattgtt
     1561 acaccgaaat tgatctgaag attttccgtc agtacctcgc tcccgcactg ggtgtaactc
     1621 accgctttgt cggtactgaa cccttttgtc gcgttaccgc ccagtacaac caggatatgc
     1681 gctactggct gaaaacgccg actatctccg caccgcccat cgaactggtt gaaattgagc
     1741 ggctgcgtta ccaggagatg ccgatatccg cttcccgggt acgtcaactg ctggcgaaaa
     1801 acgatctcac ggctatcgcg ccgctggtcc ctgcagtcac gctgcattat ttgcagaacc
     1861 tgcttgagca ctcccgccag gacgcggcag ctcgtcaaaa gccccccgca tgagaaacag
     1921 gtgaaaaatg aaaataaacc agcccgccgt tgcaggcacc cttgagtctg gggatgtgat
     1981 gatacgcatc gccccactcg atacgcagga tatcgacctg caaatcaaca gcagcgttga
     2041 gaaacagttt ggcgatgcaa ttcgcaccac cattctggac gttctcgccc actacaacgt
     2101 gcgcggcgta cagctgaatg tcgatgacaa aggcacactg gactgcattt tacgtgcacg
     2161 actggaagcc ctgctggcac gcgccagcgg tatcccgact ctgccatggg aggattgcca
     2221 atgatttccg cttcgctgca acaacgtaaa actcgcaccc gccgcagcat gttgtttgtg
     2281 cctggtgcca atgccgcgat ggtcagcaac tccttcatct acccggctga tgccctgatg
     2341 tttgacctcg aagactccgt ggcattacgt gaaaaagaca ccgcccgccg catggtttat
     2401 cacgcgctgc aacatccgct gtatcgcgat attgaaacca ttgtgcgtgt caacgcgctg
     2461 gattccgaat ggggtgttaa cgacctggaa gccgtcgttc gcggtggtgc ggacgttgtg
     2521 cgtctgccga aaaccgatac cgctcaggat gttctggata ttgaaaaaga gatcctgcgt
     2581 atcgaaaaag cctgtggtcg tgaacccggc agcaccggcc tgctggcggc gattgaatct
     2641 ccgctgggca ttacccgcgc agtggaaatc gctcacgctt ccgagcgttt gatcggtatc
     2701 gccctaggtg cagaagacta tgtgcgcaac ctgcgtacag aacgctcccc ggaaggaact
     2761 gaactgctgt tcgcacgctg ttccattttg caggccgcgc gctctgcggg tattcaggcg
     2821 ttcgataccg tctattccga cgctaacaac gaagccggat tcctgcaaga agccgcccac
     2881 atcaaacagc tgggctttga cggcaaatcg ctgatcaacc cgcgtcagat tgatctgctg
     2941 cacaacctct acgcaccgac ccagaaagaa gtggatcacg cccgccgcgt cgtagaagcc
     3001 gctgaagccg ccgctcgcga aggcctcggc gtggtttccc tgaacggcaa gatggtggac
     3061 ggtccggtta tcgatcgcgc ccgtctggtg ctctcccgtg cagaactttc cggcatccgc
     3121 gaagaataag gcaatcaaaa tgacgcagaa aattgaacaa tctcaacgac aagaacgggt
     3181 agcggcctgg aatcgtcgcg ctgaatgcga tcttgccgct ttccagaact caccaaagca
     3241 aacctaccag gctgaaaaag cgcgcgatcg caaactgtgc gccaacctgg aagaagcgat
     3301 tcatcgctct ggtttacagg acggcatgac ggtttccttc catcacgctt tccgtggcgg
     3361 tgacctgacc gtcaatatgg tgatgggcgt catcgcgaag atgggcttta aaaacctgac
     3421 tctggcctcc agctccctga gtgattgcca tgcgccgctg gtagaacaca ttcgccaggg
     3481 cgtggttacc cgcatttata cctctggcct gcgcggtcca ctggcggaag aaacctcccg
     3541 tggtctgctg gcggaaccgg tgcaaatcca ctctcacggc ggacgtgtgc atctggtaca
     3601 gagcggcgaa ctgaatatcg acgtggcttt cctcggcgtc ccatcctgtg atgaattcgg
     3661 taatgccaac ggttacaccg gtaaagcctg ctgtggctcc ctcggctatg caatggttga
     3721 tgccgacaac gcaaaacagg tcgtgatgct taccgaagaa ctgctgcctt atccgcataa
     3781 tccggcaagc attgagcaag atcaggttga tttgatcgtc aaagttgatc gcgttggcga
     3841 tgctgcaaaa atcggcgctg gtgcgacccg tatgaccact aacccgcgcg aactgcttat
     3901 tgcccgtagc gctgcggatg tgattgtcaa ctctggctac ttcaaagaag gtttctccat
     3961 gcaaaccggc accggcggcg cttcgctggc ggtaacccgt ttcctggaag acaaaatgcg
     4021 tagccgcgat attcgcgccg acttcgccct cggcggtatt actgcaacga tggttgatct
     4081 gcacgaaaaa ggtctgatcc gcaaactgct ggatgtgcag agctttgaca gccatgctgc
     4141 gcaatcgctg gcccgtaacc ccaatcacat cgaaatcagc gccaaccagt acgctaactg
     4201 gggttcgaaa ggcgcatcgg ttgatcgtct ctacgtggtg gtactgagcg cgctggaaat
     4261 tgacacccag ttcaacgtta acgtgctgac cggctctgac ggcgtactgc gtggtgcttc
     4321 cggtggtcac tgcgataccg cgattgcctc tgcgctttcc atcatcgtcg cgccgctggt
     4381 acgcggtcgt attccgactc tggtggataa cgtgctgacc tgcatcaccc cgggctccag
     4441 tgtcgatatt ctggtcacag accacggtat cgcagttaac ccggcacgtc cggagctggc
     4501 agaacgtctg ccggaagcgg gcattaaagt ggtttccatt gagtggctgc gtgaacgtgc
     4561 gcgtctgctg accggtgaac cacagccgat tgaattcacc gaccgagtcg ttgccgttgt
     4621 gcgttaccgc gatggctcgg tgatcgatgt tgtacatcag gtgaaggaat aagccatgca
     4681 cctgcttcct gaactcgcca gccaccatgc ggtgtcaatt cccgagctgc tcgtcagccg
     4741 ggatgaaagg caagcacggc aacacgtctg gctcaagcgc catcctgttc cactggtctc
     4801 ctttaccgtg gttgcgcctg ggccgattaa agacagtgag gtcacacgcc gaatttttaa
     4861 tcatggcgtg acagccttgc gtgccttagc cgcaaaacag ggctggcaaa ttcaggagca
     4921 ggctgcactg gtttccgcca gcggaccgga gggtatgttg agcattgccg ccccggctcg
     4981 cgacctcaag ctcgccacca ttgagcttga acatagtcat cctctcgggc ggttatggga
     5041 tatcgatgtc ctgacgcccg aaggcgaaat tctctcccgc cgcgactatt cactgccgcc
     5101 tcgccgctgc ctgttgtgcg agcaaagcgc agccgtctgc gcgcgtggaa aaacccatca
     5161 actgaccgat ttactcaacc gcatggaggc actgctgaac gatgtcgatg cctgcaacgt
     5221 caactaaaac cacaaagctt gcgacgtcat taatcgatga gtacgccctg ctgggctggc
     5281 gcgccatgct gactgaagtc aatctgtcac cgaaaccagg tctcgtggat cgcattaact
     5341 gcggtgcgca taaagatatg gcgctggaag atttccaccg cagcgcgctg gcgattcagg
     5401 gctggctacc ccgtttcatt gaatttggtg cctgtagtgc ggaaatggca ccagaagcgg
     5461 tactccacgg attacgccca attggtatgg cttgcgaagg tgatatgttc cgcgccaccg
     5521 cgggagtaaa cacgcataag ggcagcattt tttctttagg gctactgtgt gcggcaattg
     5581 gccgtttgct tcagctcaac cagtcgctaa cgccaacaac cgtttgttct acggcggcaa
     5641 gtttctgccg tggcctgacc gatcgcgaac tgcgtaccaa taattcacaa ctgacggcag
     5701 gtcaacggtt gtaccagcag cttgccctta ccggcgcacg cggtgaagcc gaagcgggtt
     5761 atccactggt gatcaaccac gccttgccgc attacctcac tctgctggat caggggttag
     5821 atcctgaact ggcattgctc gataccttgc tcctactgat ggcgatcaac ggcgatacca
     5881 acgttgcttc gcgcggtggc gaggggggcc tgcgctggct acagcgcgag gcgcaaacat
     5941 tattgcaaaa agggggcatt cgaaccctcg ccgatctcga ttatctccgg cagttcgaca
     6001 gggagtgtat cgaacgaaat ctcagtccag gcggcagtgc cgacctgctg atccttacct
     6061 ggtttttagc acagatttaa ttatttaagc acttgataaa tttggaaata ttaattttcg
     6121 gagaacccgt atgtctttag caaaagataa tatatggaaa ctattggccc cactggtggt
     6181 gatgggtgtc atgtttctta tccctgtccc cgacggtatg ccaccacagg catggcatta
     6241 cttcgctgtg tttgtggcaa tgattgtcgg catgatcctc gagccaattc cggcaacagc
     6301 gatcagtttt attgcggtta ctatttgcat tattggcagt aattacctgc tctttgatgc
     6361 caaagaatta gctgacccag cgtttaatgc gcaaaaacag gcgctgaaat ggggtctggc
     6421 tggtttttcc agcaccacgg tatggctggt atttggcgca tttatttttg cattagggta
     6481 tgaagtttcc gggttaggtc ttcgcattgc ccttttcctg gtgaaattca tgggcaaacg
     6541 cacgctgacg ttgggttatg cgattgtcat tatcgacatt ctgctggcgc cgtttacacc
     6601 gtccaacacc gcgcgtaccg ggggtacggt ttttccggtc attaaaaacc tgccgccgtt
     6661 gtttaaatca ttccccaacg atccgtccgc gcgtcatatt ggcggctatt tgatgtggat
     6721 gatggtcatt agtaccagtc tgagttcgtc catgtttgtc accggtgcgg caccaaacgt
     6781 gctgggtctg gagttcgtca gcaaaattgc cggtatccag attagctggt tgcagtggtt
     6841 cctctgcttc ctgccggttg gggttatctt gcttatcatt gcgccgtggc tttcctacgt
     6901 gctgtacaaa ccggaaatca cacacagtga agaagtggca acctaggcgg gtgatgaact
     6961 gaaaaccatg ggtgcgctga cacgcagaga gtggacactg attggccttg tattgctcag
     7021 cttaggtttg tgggtttttg gcagtgaagt cattaatgct actgcagttg gtctgctggc
     7081 agtttcgcta atgctggccc tgcacgttgt gccttggaaa gatattaccc gctataacag
     7141 cgcatggaac acgctggtca acctggcaac tctggttgtg atggctaacg gcctgactcg
     7201 ttctggcttt attgactggt tcgccggtac catgagtacg cacctggaag gattctcacc
     7261 aaacgcaacg gtgattgtac tggttctggt gttctacttt gcacactacc tgtttgccag
     7321 cctgtctgcg cacaccgcaa ccatgctgcc ggttattctg gccgtcggta aaggtattcc
     7381 gggcgtacca atggaacaac tgtgtatcct gctggtgctg tctatcggta tcatgggctg
     7441 tctgacgccc tatgcaaccg gtcctggggt gattatttac ggctgtggct atgtgaaatc
     7501 aaaagattac tggcgtcttg gcgcaatctt cggggtgatt tacatctcta tgttgctgtt
     7561 ggttggctgg ccgattctcg ccatgtggaa ctaatacgtt cgccaaacgc tgaataaatc
     7621 atcacgcccg ccaggtaagc ccacctggcg ggcgtgatga tttaatagat agtattcagt
     7681 gtatgtatga gttccacacc cattatgaaa gcattctggc gtaacgccgc gttgctcgcg
     7741 gtttctctgc ttcccttctc ttctgccaac gccgtagcgt tgcagacaaa acagtatggc
     7801 gattttgatc gctatgtcct ggccctctcc tggcaaaccg gattttgcca gagtcaacac
     7861 gatcgaaatc gtaacgaacg agatgaatgt cgcctgcaaa ccgaaacgac caacaaagct
     7921 gattttctga ccgtacatgg tctgtggcca ggattgccta aatcggttgc tgcccgtggt
     7981 gttgatgaac gccgctggat gcgcttcggt tgcgctactc gcccaatccc gaatctacca
     8041 gaagcgcacg ccagccggat gtgttcatcg ccggaaaccg ggttatcact ggaaacggcc
     8101 gctaaactaa gtgaagtcat gccaggagct ggcggacgtt cctgcctgga acgctacgaa
     8161 tatgccaaac acggtgcctg ctttggtttt gatccggacg catacttcgg tacgatggta
     8221 cgcctgaatc aagaaattaa agagagcgaa gccggaaaat tccttgcgga taattacggt
     8281 aaaacagtga gccgccgtga ctttgacgcc gcctttgcca aaagctgggg aaaagagaac
     8341 gtgaaagcag ttaagctaac gtgccagggt aaccctgcgt atttgactga aattcagatc
     8401 tcgatcaaag ctgacgccat caacgctccg ctttctgcaa actcattctt gccacaacca
     8461 cacccaggca actgtggcaa aacctttgtg attgataaag tgggttatta atcatctgat
     8521 ttacaaaaca cgctaattcg tcttccataa accgtgacga ttaagaatta tacataatgc
     8581 gctgcattga ggaattccct gaatgtgacg caaatcactt caaagagtga gcaacagtca
     8641 gtatcatcat gtgagttaaa ccctcgccgc ctgacggtga gggttttctt ttgggtatgt
     8701 ttatctgcga cactcgcagt accgacgaca tggagtaaaa atgtccagac caactatcat
     8761 cattaacgac ctggatgccg aacgcatcga tattctgctg gagcaacccg cctatgctgg
     8821 tttgccaatc gccgacgcgt taaacgcaga gttggatcgc gcccaaatgt gttcgccaga
     8881 agagatgcca cacgacgtgg tgacaatgaa cagccgggtt aaattccgca atcttagcga
     8941 tggcgaagtg cgtgtgcgca cgctggtgta tccggcaaaa atgaccgata gcaatactca
     9001 gctttccgtt atggctccgg taggtgccgc actgctgggg ctgcgcgttg gcgattccat
     9061 tcactgggaa cttccgggcg gcgttgcaac ccaccttgaa gtgctggaac tcgaatacca
     9121 gccagaagct gctggcgact acctgcttta atcccatctg cacaagcgat aactcgcttt
     9181 gcccagagga tgcactcgca tcctctttac gcaaaatcag caatttttcc tggttctcac
     9241 tgttcacttt tgctgcaaaa ttattccgtt tcgtttgtgg gaataaccat ggcagaagca
     9301 ttttacatcc tgataggatt tctgattatg gcggcgatta tcgtcatggc tgtcctttac
     9361 ctcgaaaacc actcctgacg atcatattgt tccccccggc atcgcattca ccagacctga
     9421 aactgccttc tgcgccgcct ctgcgctttg tgcaccgggt accagaatca ccttacggca
     9481 ctcctcttca cgtttttcga aaatctcata tccccgggcg gcctcttcaa acggcatata
     9541 gtgggtaaca atttcttctg gtttcagtaa tcctttctca attaacggta ataattctcc
     9601 cagccatgcg tgaacgtggg tctgtcccat tttaaacgtc aaccctttat caaaggcgtc
     9661 accaaacagg aaaccgtgaa taaatccagc gtagacgccc ggtacgctaa caatgccgcc
     9721 acgcctgacc gccgcaatac actggcgcaa cgctttaccg ctgctgccct ccagtttcag
     9781 gttagtcagc accgtttccg tggtgctgcc tttcgcttca aaaccgacgg cgtctattac
     9841 tgcatccacg ccccggtgac ctgccgtttg ttcaataatt gactgtgccg gatcgctatc
     9901 ttcatcgaaa ttaatcggga tcgcgccgta gcggtcagcg gcgaaactca agcggtaggg
     9961 atgatgatca acaacaaaaa tctgttccgc accgagcaac cgtgcacagg cgattgtcaa
    10021 caatcccact ggaccggcac catagactgc aacgcttgaa ccttgttgga tctgcgcatt
    10081 ttttgctgcc tgccatgccg ttggcagaat atcagaaagg aaaagggctt tatcatctga
    10141 aagcaaaggc ggtactttaa acggccccac attcccttta gggacgcgga catattccgc
    10201 ctgtccacca ggaacgccac catacaggtg actataacca aacaatgccg cgggagctgg
    10261 tatctgtttt ttattgagcg cagcgccttt acccgcattg gtattttcgc aggcggcata
    10321 ttgctgcatt cgacagaaaa aacagtcgcc acaagcaatg acaaacggaa ttaccacccg
    10381 gtcgcctttt tgcaaatttt ttacgtcctt tccggtttca acgacttccc ccataaattc
    10441 atgaccaaaa atatcgccat gtttaaccta gggtattttg cctcgataaa gatggagatc
    10501 agagccacag atcgccgttg ccgtaatacg cagaataata tcatctgcct gttcaatgcc
    10561 cggatcggga acattttcta cctgaacgtg atgtgggccg tgataagtca atgctttcat
    10621 gcaacctcca gagacagttc aaaaaagagt cagtctttaa gggtagctat cacagcggga
    10681 aaacgggcgg taccgcaggt tttgggagaa ttcctagtgt tcagtgagaa tatattaatc
    10741 acagaaaccg ttcgtaagga aaaagaacca gacaaatatc agggataaat attataatca
    10801 tggcgaatga ttttttcatg attaacaggg agaaagggtt atgtataaga caatcattat
    10861 gccagttgat gtatttgaaa tggaattgag cgacaaagct gttcgccacg ctgaattcct
    10921 cacccaggat gacggagtta ttcatctact tcacgtacta cccgggtcag ccagcctgag
    10981 cctgcaccgt tttgccgctg atgtgcgtcg ttttgaagag catctgcaac atgaagcaga
    11041 agaacgtctg caaacgatgg tcagccactt caccatcgat ccttcccgca ttaaacaaca
    11101 tgtccgtttt ggtagcgtgc gggatgaagt caatgagttg gcagaagaac tgggggctga
    11161 tgttgtagtt atcggttctc gcaacccatc gatttcgacc catctgttag gttctaacgc
    11221 ctcgagcgtg atccgccacg ccaatctgcc tgtactggtc gttcgctaac agataaaagt
    11281 atttatgccg ccctgcctag aacatcccgg cagggctttt taatgccata aaaaagccgc
    11341 taggtttgac cccggcggct aagcaattgc aggtgaatct tacttcttct tatgcagttt
    11401 tggtgcgaat caggtagtca aaagcactca gagaggcttt ggcaccttcg ccagtggcga
    11461 tgatgatctg cttgtacgga accgtcgtac agtcacccgc tgcgaatacg cctttgacgt
    11521 tggtttcgca tttcgcatca atgataatct cacccatgcg gttacgttcg actgcgcctt
    11581 cgagccagtt ggtgttcggc agcagaccaa tctgcacgaa aataccggcc agttcgatgt
    11641 tgtgaatatc gccgctgaca cgatctcgat attccagacc aacgactttg ctgccgtcgc
    11701 ctttcacttc cgtggtttgc gcattcagaa taatgtcgac gtttttcagg ctgcgcagtt
    11761 tgtcctgcag aacctggtcg gctttcattt ctggcgcaaa ttccagcagc gttacgtgct
    11821 caacgatacc cgccaggtca attgccgctt ccacgccgga gttaccgccg ccgataaccg
    11881 ctacgcgttt acctttaaac agcgggccgt cgcagtgcgg gcagtaggtc acgcctttgg
    11941 tgcgatactg atcttcgccc ggaacgttca tgttgcgcca ttttgcaccg gtcgccacga
    12001 taatgctgcg tgctttcagt accgcgccag aagctgtttc aatctgatgc agaccacctt
    12061 caactgctgc tgggatcagt ttgctggcgc tctggctgtc gatcacatca acgtcgtatt
    12121 catcaacgtg aactttcagt gcgcctgcca gcttctgccc ttcagtcttc ggtacagaaa
    12181 tgtagttttc gatatcaacg gtatcgagga tctgaccacc aaaacgttcg cccatcagac
    12241 cggtacggat gcctttacgt gcggagtaaa ttgctgccgc tgcacccgcc gggccggaac
    12301 cgacgattaa tacgtcataa gcatcacgct tgttcagctc ttctgccgca cgtttttccg
    12361 cgcccgtatc aattttggca acgatttcag tcaacgtcat gcggccctga ccaaactctt
    12421 tcccgtttac gaacactgcc ggaacgccca tcacgttgcg atcggtgatt tcgttctgga
    12481 aggtgccgcc gtcaattgca gtgtgcttga tgcgcgggtt cagtacgctc atcaggttca
    12541 gcgcctgcac cacgtccggg cagttatggc aagagagcga gtaataggtt tcgaattcaa
    12601 aatcaccgtc aatatggcga atctgctcca gcagagactg cgcttctttc gacggatgac
    12661 caccggtcca cagcaacgcc agtaccagcg aggtgaactc gtggcccagc ggggagcctg
    12721 caaaacgtgg cccctggttg gaacctgggt tggtgatcag gaaagacggc ttacgcaccg
    12781 gcaagctgtt atcttcttta aaggtgactt tgtctgacag ttctgcgatt tcagccaaca
    12841 gttccttgat ttctgccgat ttagcgctgt catccagcgt ggcaattaac tcaacaggct
    12901 tggtcaattt ctcaaggtaa gccttgagtt gagttttcat atttgtgtcg agcatgttta
    12961 tctcctgggc tttaaacatc atcatgcaag cggcctctac ggctacctgg atgcagcttg
    13021 catcatagtg cggggaagaa aatcgggtgc cgcagcaccc gaagaattag gtgaatttcc
    13081 gaagtatttc gcgccggagt tggtagcgcg aaagacgaag gaaatttaga ttttaccaac
    13141 caggtccaga gacggagcca gagttgcttc accttctttc catttagccg ggcaaacttc
    13201 acctgggtga gaagctacgt actgtgctgc tttgatttta cgcagcaggt cagacgcgtc
    13261 acggccaatg ccttcagcgg taacttcgat tgcctggatg ataccctgcg ggtcaacaac
    13321 gaaggtcgca cggtcagcca gaccttcatc ttcacgcatg ttgtcgaagt tacgggtcag
    13381 ggcgccagtc gggtcgccga tcatcgcata tttgatttta gcgatggttt cagagctgct
    13441 gtgccatgct ttgtgggtga agtgagtatc ggtagatact gcgtatacgt ctacgcccag
    13501 tttctgcagt tcttcgtagt ggtcagcaac gtcacccagt tcggtcgggc atacgaaagt
    13561 aaagtcagcc gggtagaaga agaagacgct ccagcggcct tcggtatctt tttcggtgat
    13621 ttcgatgaat tcgccgtttt tgaatgcctg gtttttaaaa ggtttaattt tggtgttaat
    13681 caaggacatc tatacttcct ccgtgttttc gatgagatgt aaggtaacca atttttgccg
    13741 attcggctaa tgcgtttcca ttatcaaatc gataagtttt accttacaac cttcgtaaga
    13801 caactttgtg aactttgcac cgccagcggc gataaaaagt aaaatggccc cctttccagg
    13861 tgaccgtgta atctgaacta ccctttggta tcttcagcgc ctgcctgcag gctgaggtgt
    13921 tgcccttaca aatgcaacaa cgacatggat tacaacaccc tcataaacaa agggcaatca
    13981 cctgatctaa gctcttacct atgacagtga taggttatgc cttttactcg acttttgcac
    14041 tgactgaaaa ggacaaatta atgttaaaaa agatactttt actggctctg cttcctgcaa
    14101 tcgccttcgc agaggaactt cctgctccag taaaagcgat tgaaaaacag ggcattacaa
    14161 tcatcaaaac gttcgatgcc cccggaggaa tgaaaggtta tctcggaaag tatcaggata
    14221 tgggcgtcac catctacctg actccagatg gtaagcacgc tatctctggt tacatgtaca
    14281 acgagaaagg tgaaaacctg agtaacacac ttatcgaaaa agaaatttac gcaccagccg
    14341 gacgcgaaat gtggcaacgg atggaacaat cccactggct cctcgacggt aaaaaagatg
    14401 cgccggtcat tgtctacgtc ttcgccgatc cgttctgccc atattgtaaa cagttctggc
    14461 agcaggc
//
LOCUS       DADMHM010000095        14446 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.096, whole genome shotgun sequence.
ACCESSION   DADMHM010000095 DADMHM010000000
VERSION     DADMHM010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14446)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14446)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14446
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.096"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            205..624
                     /gene="umuD"
                     /locus_tag="JN125_002457"
     CDS             205..624
                     /gene="umuD"
                     /locus_tag="JN125_002457"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translesion error-prone DNA polymerase V
                     autoproteolytic subunit"
                     /protein_id="HAY8872213.1"
                     /translation="MLFIKPADLREIVTFPLFSDLVQCGFPSPAADYVEQRIDLNQLL
                     IQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAAVDGEFTVKKLQLR
                     PTVQLIPMNSAYSPITISSEDTLDVFGVVIHVVKAMR"
     gene            624..1892
                     /locus_tag="JN125_002458"
     CDS             624..1892
                     /locus_tag="JN125_002458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Y-family DNA polymerase"
                     /protein_id="HAY8872214.1"
                     /translation="MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEA
                     KALGVKMGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDE
                     AFCDLTGVRNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQT
                     GGVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHF
                     NVVLERTVRELRGEPCLLLEEFAPTKQEIICSRSFGERITDYTSMRQAICSYAARAAE
                     KLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIW
                     QAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMTVMDTLNAKEGRGTLYFA
                     GQGIQQQWQMKRAMLSPRYTTRSSDLLRVK"
     gene            complement(1938..2468)
                     /gene="dsbB"
                     /locus_tag="JN125_002459"
     CDS             complement(1938..2468)
                     /gene="dsbB"
                     /locus_tag="JN125_002459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbB"
                     /protein_id="HAY8872215.1"
                     /translation="MLRFLNQCSQGRGAWLLMAFTALALELTALWFQHVMLLKPCVLC
                     IYERCALFGVLGAALIGAIAPKTPLRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSPFA
                     TCDFMVRFPEWLPLDKWVPQVFVASGDCAERQWDFLGLEMPQWLLGIFIAYLIVAVLV
                     MISQPFKAKKRDLFGR"
     gene            complement(2614..4155)
                     /gene="nhaB"
                     /locus_tag="JN125_002460"
     CDS             complement(2614..4155)
                     /gene="nhaB"
                     /locus_tag="JN125_002460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)/H(+) antiporter NhaB"
                     /protein_id="HAY8872216.1"
                     /translation="MEISWGRALWRNFLGQSPDWYKLALIIFLIVNPLIFLISPFVAG
                     WLLVAEFIFTLAMALKCYPLLPGGLLAIEAVFIGMTSAEHVREEVAANLEVLLLLMFM
                     VAGIYFMKQLLLFIFTRLLLSIRSKMLLSLSFCVAAAFLSAFLDALTVVAVVISVAVG
                     FYGIYHRVASSRTEDTDLQDDSHIDKHYKVVLEQFRGFLRSLMMHAGVGTALGGVMTM
                     VGEPQNLIIAKAAGWHFGDFFLRMSPVTVPVLICGLLTCLLVEKLRWFGYGETLPEKV
                     REVLQQFDDQSRHQRTRQDKIRLIVQAIIGVWLVTALALHLAEVGLIGLSVIILATSL
                     TGVTDEHAIGKAFTESLPFTALLTVFFSVVAVIIDQQLFSPIIQFVLQASEHAQLSLF
                     YIFNGLLSSISDNVFVGTIYINEAKAAMESGAITLKQYELLAVAINTGTNLPSVATPN
                     GQAAFLFLLTSALAPLIRLSYGRMVWMALPYTLVLTLVGLLCVEFTLAPVTEWFMQMG
                     WIATL"
     gene            4377..5096
                     /gene="fadR"
                     /locus_tag="JN125_002461"
     CDS             4377..5096
                     /gene="fadR"
                     /locus_tag="JN125_002461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid metabolism transcriptional regulator
                     FadR"
                     /protein_id="HAY8872217.1"
                     /translation="MVIKAQSPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVT
                     RTTLREVLQRLARDGWLTIQHGKPTKVNNFWETSGLNILETLARLDHESVPQLIDNLL
                     SVRTNISTIFIRTAFRQHPDKAQEVLATANEVADHADAFAELDYNIFRGLAFASGNPI
                     YGLILNGMKGLYTRIGRHYFANPEARSLALGFYHKLSALCSEGAHDQVYETVRRYGHE
                     SGEIWHRMQKNLPGDLAIQGR"
     gene            complement(5148..6680)
                     /locus_tag="JN125_002462"
     CDS             complement(5148..6680)
                     /locus_tag="JN125_002462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SpoVR family protein"
                     /protein_id="HAY8872218.1"
                     /translation="MATIDSMNKDTTRLSDGPDWTFDLLDVYLAEIDRVAKLYRLDTY
                     PHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIETERLYKHGQQGLAYEIVINSNP
                     CIAYLMEENTITMQALVMAHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARKYITEC
                     EERYGVDEVERLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWR
                     TLPKREEEKTVAEARRYPSELQENLLYFMEKNAPLLESWQREILRIVRKVSQYFYPQK
                     QTQVMNEGWATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVFQPPYNSPWYSGINP
                     YALGFAMFQDIKRICQSPTEEDKYWFPDIAGSDWLETLHFAMRDFKDESFISQFLSPK
                     VMRDFRFFTVLDDDRHNYLEISAIHNEEGYREIRNRLSSQYNLSNLEPNIQIWNVDLR
                     GDRSLTLRYIPHNRAPLDRGRKEVLKHVHRLWGFDVMLEQQNEDGSVELLERCPPRMG
                     NL"
     gene            7010..8308
                     /locus_tag="JN125_002463"
     CDS             7010..8308
                     /locus_tag="JN125_002463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino acid dehydrogenase"
                     /protein_id="HAY8872219.1"
                     /translation="MRVVILGSGVVGVASAWYLNQAGHEVTVIDREPGAALETSAANA
                     GQISPGYAAPWAAPGVPLKAIKWMFQRHAPLAVRLDGTQFQLKWMWQMLRNCDTSHYM
                     ENKGRMVRLAEYSRDCLKALRAETNIQYEGRQGGTLQLFRTEQQYENATRDIVVLEDA
                     GVPYQLLESSRLAEVEPALAEVAHKLTGGLQLPNDETGDCQLFTQNLARMAEQAGVKF
                     RFNTPVDQLLCDGEQIYGVKCGDEVIKADAYVMAFGSYSTAMLKGIVDIPVYPLKGYS
                     LTIPIAQEDGAPVSTILDETYKIAITRFDNRIRVGGMAEIVGFNTELLQPRRETLEMV
                     VRDLYPRGGHVEQATFWTGLRPMTPDGTPVVGRTRFKNLWLNTGHGTLGWTMACGSGQ
                     LLSDLLSGRTPAIPYEDLSVARYSRGFTPSRPGHLHGAHS"
     gene            8376..9377
                     /gene="dadX"
                     /locus_tag="JN125_002464"
     CDS             8376..9377
                     /gene="dadX"
                     /locus_tag="JN125_002464"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005005651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catabolic alanine racemase DadX"
                     /protein_id="HAY8872220.1"
                     /translation="MSARPRRTRVVKANAYGHGIERIWSALGATDGFALLNLEEAITL
                     RERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHSNWQLKALQNARLKAPLDIYLKVN
                     SGMNRLGFQPDRVLTVWQQLRAMANVGEMTLMSHFAEAEHPDGISSAMARIEQAAEGL
                     ECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPSGQWRDIANTGLRPVMTLSSEIIG
                     VQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGYPRHAPTGTPVLVDGVRTMTVGTV
                     SMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAAAAGTVGYELMCALALRVPVVTV"
     gene            complement(9764..11500)
                     /locus_tag="JN125_002465"
     CDS             complement(9764..11500)
                     /locus_tag="JN125_002465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309713.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium/proton antiporter"
                     /protein_id="HAY8872221.1"
                     /translation="MDATTIISLFILGSILVTSSILLSSFSSRLGIPILVIFLAIGML
                     AGVDGVGGIPFDNYPFAYMVSNLALAIILLDGGMRTQASSFRVALGPALSLATLGVLI
                     TSGLTGMMAAWLFNLDLIEGLLIGAIVGSTDAAAVFSLLGGKGLNERVGSTLEIESGS
                     NDPMAVFLTITLIAMIQQHESSVSWMFVVDILQQFGLGIVIGLGGGYLLLQMINRIAL
                     PAGLYPLLALSGGILIFALTTALEGSGILAVYLCGFLLGNRPIRNRYGILQNFDGLAW
                     LAQIAMFLVLGLLVNPSDLLPIAIPALILSAWMIFFARPLSVFAGLLPFRGFNLRERV
                     FISWVGLRGAVPIILAVFPMMAGLENARLFFNVAFFVVLVSLLLQGTSLSWAAKKAKV
                     VVPPVGRPVSRVGLDIHPENPWEQFVYQLSADKWCVGAALRDLHMPKETRIAALFRDN
                     QLLHPTGSTRLREGDVLCVIGRERDLPALGKLFSQSPPVALDQRFFGDFILEASAKYA
                     DVALIYGLEDGREYRDKQQTLGEIVQQLLGAAPVVGDQVEFAGMIWTVAEKEDNEVLK
                     IGVRVAEEEAES"
     gene            complement(11595..12509)
                     /gene="ldcA"
                     /locus_tag="JN125_002466"
     CDS             complement(11595..12509)
                     /gene="ldcA"
                     /locus_tag="JN125_002466"
                     /EC_number="3.4.17.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="muramoyltetrapeptide carboxypeptidase"
                     /protein_id="HAY8872222.1"
                     /translation="MSLFHLIAPSGYSIKQHAALRGIQRLTDAGHQVNNVEVIARRCE
                     RFAGTETERLEDLNSLARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLI
                     CGHSDFTAIQCGLLAQGNVITFSGPMLVVNFGADELNAFTEHHFWLALRNKTFTIEWQ
                     GEGPTCQTEGTLWGGNLAMLISLIGTPWMPKIENGILVLEDINEHPFRVERMLLQLYH
                     AGILPRQKAIILGSFSGSTPNDYDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVT
                     LPLGAHAILNNTREGTQLTISGHPVLKM"
     gene            12609..13220
                     /gene="emtA"
                     /locus_tag="JN125_002467"
     CDS             12609..13220
                     /gene="emtA"
                     /locus_tag="JN125_002467"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309714.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane-bound lytic murein transglycosylase
                     EmtA"
                     /protein_id="HAY8872223.1"
                     /translation="MKLRWFAFLIVLLAGCSSKHDYTNPPWNAKVPVQRAMQWMPISQ
                     KAGAAWGVDPQLITAIIAIESGGNPNAVSKSNAIGLMQLKASTSGRDVYRRMGWSGEP
                     TTSELKNPERNISMGAAYLNILETGPLAGIEDPKVLQYALVVSYANGAGALLRTFSSD
                     RKKAISKINDLDADEFLDHVARNHPAPQAPRYIYKLEQALDAM"
     gene            complement(13222..13956)
                     /locus_tag="JN125_002468"
     CDS             complement(13222..13956)
                     /locus_tag="JN125_002468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar brake protein"
                     /protein_id="HAY8872224.1"
                     /translation="MSHYHEQFLKQNPLAVLGVLRDLHKAAIPLRLSWNGGQLISKIL
                     AITPDKLVLDFGSQAEDNIAVLKAQHITITAETQGAKVEFTVEQLQQSEYLQLPAFIT
                     VPPPTLWFVQRRRYFRISAPLHPPYFCQTKLADNSTLRFRLYDLSLGGMGALLETAKP
                     AELQEGMRFAQIEVNMGQWGVFHFDAQLISISERKVIDGKNETITTPRLSFRFLNVSP
                     TVERQLQRIIFSLEQEAREKADKVRD"
     gene            14157..14411
                     /locus_tag="JN125_002469"
     CDS             14157..14411
                     /locus_tag="JN125_002469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HAY8872225.1"
                     /translation="MGIIAWIIFGLIAGIIAKLIMPGRDGGGFFQTCILGIVGAVVGG
                     WLATMFGIGGSISGFDLHSFLVAVVGAILVLGVFRLLRRE"
BASE COUNT         3662 a         3613 c         3799 g         3372 t
ORIGIN      
        1 cttctattct atttttttgc cgggtgatat ttttcatttc tgctggatga gcgtcgtcgc
       61 cagaaggcca cgtgagcaca ggataagaga acgaaaaatc agcagtctat acagcgacaa
      121 atattgatag cctgaatcag tattgatctg ctggcaagaa tagactactg tatataaaaa
      181 cagtataact tcaggcagat tattatgttg tttatcaagc ctgcggatct ccgcgaaatt
      241 gtgacttttc cgctatttag cgatcttgtt cagtgtggct ttccttcacc ggcagcagat
      301 tacgtcgaac agcgcatcga tctgaatcaa ctgttgatcc agcatcccag cgcgacttac
      361 ttcgtcaaag caagtggtga ttctatgatt gatggtggaa ttagtgacgg tgatttactg
      421 attgtcgata gcgctattac cgccagccat ggtgatattg tcatcgctgc tgttgacggc
      481 gagtttacgg tgaaaaaatt gcaactacgc ccgacggtac agcttattcc catgaacagt
      541 gcgtactcgc ccattaccat cagtagcgaa gatacgctgg atgtctttgg tgtggtgatc
      601 cacgtcgtta aggcgatgcg ctgatgtttg ctctctgtga tgtaaacgcg ttttatgcca
      661 gctgtgagac ggtgtttcgc cctgatttat ggggtaaacc ggtggttgtg ctatcgaata
      721 atgacggttg cgttatcgcc cgaaacgctg aggcaaaggc gctgggtgtt aaaatgggcg
      781 atccttggtt caaacaaaaa gatctgtttc gtcgctgtgg tgtggtttgc tttagcagca
      841 attatgagct ttacgcagac atgagcaatc gggtgatgtc gacgctggaa gaactatcgc
      901 cccgcgtcga gatttacagt attgatgagg cattctgcga tctgacaggt gtgcgtaatt
      961 gtcgcgatct gactgatttt ggcagagaaa ttcgcgcaac ggtgctacaa cgtacccatc
     1021 ttactgttgg tgtggggatc gcccagacca aaacgctggc taagcttgcc aatcatgcgg
     1081 caaaaaaatg gcagcggcag acgggggggg tggtggattt atcaaatctg gaacgccagc
     1141 gtaaattaat gtctgctctc cccgtggatg acgtctgggg gattggacgg cggatcagca
     1201 aaaaactgga cgcgatgggg atcaaaaccg ttcttgattt ggcggataca gatatccggt
     1261 ttatccgtaa acattttaat gtcgtgctcg aaagaacggt gcgtgaactg cgcggtgaac
     1321 cctgtttgct actggaagaa tttgcaccga caaagcagga aattatctgt tcccgctcgt
     1381 ttggtgaacg tatcacggat tatacgtcga tgcggcaggc catttgtagt tacgctgccc
     1441 gggcggcgga aaaacttcgc agtgagcatc aatattgtcg gtttatctcc acatttatta
     1501 agacgtcacc atttgcgctc aatgaacctt attacggcaa tagcgcgtcg gtaaaactgc
     1561 tgacgcccac tcaggacagc agggatatca ttaacgccgc tacgcgatct ctggatgcca
     1621 tctggcaagc gggccatcgc taccaaaaag cgggcgtgat gctgggggat ttcttcagtc
     1681 agggagtcgc gcagctcaat ttattcgatg acaacgcacc gcgccccggg agtgagcaat
     1741 tgatgacggt aatggataca ctgaatgcta aagagggcag aggaacactc tattttgccg
     1801 ggcaggggat ccaacaacaa tggcagatga agcgagccat gctttcacca cgttatacaa
     1861 cgcgaagttc tgatttactg cgggtcaaat aaatatagcg gcaggaaaaa agcgctcccg
     1921 caggagcgcc gaatggatta gcgaccgaac agatcacgtt ttttcgcttt aaacggctgg
     1981 gaaatcatca ccagcaccgc gacaatcagg taagcgataa aaataccgag cagccactgc
     2041 ggcatttcca gacctaaaaa atcccactga cgctcggcgc aatcgccaga ggcgacaaac
     2101 acttgcggca cccatttatc cagcggcagc cattccggga aacgaaccat aaaatcacag
     2161 gtggcaaacg gcgaaggata gagctgaagc atggtgtgct cgtaagttaa ctgcacaccg
     2221 cggaacgcac tatacaacca gataaccatc gctacataac gcagcggagt tttcggggcg
     2281 atcgcgccaa tcagcgcagc acccagaacg ccgaataacg cgcagcgttc ataaatacag
     2341 agcacgcaag gtttcagtaa catcacatgc tggaaccaca gcgccgtcag ttccagtgcc
     2401 agagcagtaa acgccatcaa cagccacgcg ccccggcctt gtgaacattg gttcaaaaat
     2461 cgcaacataa tcatttccct gcaatatgca tagagtgcgc agtttaaacc aattcattcg
     2521 ctgcgccacc aggaggcagc aaaaatagga cgcaattgga caattatcgg gcgaaaaggc
     2581 aaaccgggca tttatatgcc cggtaagttg ttatcaaagc gttgctatcc agcccatttg
     2641 cataaaccat tcggttacag gggcaagcgt aaactcgacg cagagcagcc cgacgagtgt
     2701 caggacgagg gtgtaaggca gggccatcca caccatgcgg ccataagaga ggcgaatcaa
     2761 tggcgcgagt gcagaggtca gcaggaacag gaacgcagcc tgaccgttcg gcgtagcgac
     2821 agagggcaga ttggtaccgg tattaatggc gaccgccagc agctcgtatt gcttcaacgt
     2881 gatagcgcca ctttccattg ccgctttcgc ttcgttgata taaatcgtcc ccacgaagac
     2941 gttatccgaa atggatgaca gcaggccgtt gaaaatatag aacaacgaca gctgagcatg
     3001 ttccgatgcc tgcaacacaa actgaataat cggcgaaaac agttgttggt cgataatcac
     3061 cgcgactacc gagaaaaaca ccgtcaacag tgcggtgaat ggcagagatt cggtgaaggc
     3121 tttaccgata gcatgttcat cggtgacacc ggtcaatgat gtcgccagaa taatgaccga
     3181 caaaccaatc aagccaacct ccgccagatg caacgccagc gcagtcacca gccagacgcc
     3241 gataatcgcc tggacaatca gacggatttt atcctgacgg gtacgctggt ggcggctttg
     3301 atcgtcaaac tgttgcaaca cttcgcggac tttctccggc agcgtttcac cgtagccaaa
     3361 ccaacgcagc ttctctacca gcaggcaggt taacaggcca caaatcagaa ccggaacggt
     3421 caccggcgac atgcgcagga agaaatcgcc aaaatgccag ccagccgctt tagcgatgat
     3481 caggttctgt ggttcgccca ccatggtcat tacgccgcct aatgcggtgc cgacaccggc
     3541 atgcatcatc aggctacgca gaaagccacg gaactgttcc agaaccactt tgtaatgctt
     3601 gtcgatatga ctatcgtctt gcaggtcggt atcttcagta cgggaagagg ctacgcggtg
     3661 ataaatacca taaaaaccga ctgcaacgct gatcaccacc gccacgacgg ttaaggcatc
     3721 gaggaacgcg gagaggaacg ccgccgccac gcaaaaagag agcgacagca gcattttgga
     3781 acgaatgctt aacagcaaac gggtaaatat gaacagcaat agctgtttca taaaatagat
     3841 acccgccacc ataaacatca gtaacagcaa gacttcaaga tttgccgcca cctcttcacg
     3901 gacgtgttcc gcgctggtca tgccgatgaa taccgcttca atagccaaca gaccaccggg
     3961 gagtagcggg tagcatttca gggccatcgc cagagtgaaa ataaattccg ctaccagcaa
     4021 ccagccagcg acgaaagggc tgatgaggaa aattaacgga tttacgatta agaaaatgat
     4081 gagggcgagt ttgtaccagt cgggggactg gcccaaaaaa ttgcgccata gcgcgcggcc
     4141 ccaggagatc tccatgatgg tttcccttac cttacaaata atcaatgatg tttttatgtt
     4201 taaacgcaaa gcttaacggt caggcaggag tgaggcaagt cttgatagtc aaggggaaag
     4261 agatgcggaa aatgaagcct tgatcccttt tttcttcttt ttgtctgcta tcagcgtagt
     4321 tagccctctg gtatgatgag tccaactttg ttttgctgtg ttatggaaat ctcactatgg
     4381 tcattaaggc gcaaagcccg gcgggtttcg cggaagagta cattattgaa agtatctgga
     4441 ataaccgctt ccctcccggg actattttgc ccgcagaacg tgaactttca gaattaattg
     4501 gcgtaacgcg tactacgtta cgtgaagtgt tacagcgtct ggcacgagat ggctggttga
     4561 ccattcaaca tggcaagccg acgaaggtga ataatttctg ggaaacctct ggtttaaata
     4621 tccttgaaac actggcgcga ctggatcacg aaagtgtgcc gcagcttatt gataatttgc
     4681 tgtcggtgcg taccaatatt tccactattt ttattcgcac cgcgtttcgt cagcatcccg
     4741 ataaagcgca ggaagtgctg gctaccgcta atgaagtggc cgatcacgcc gatgcctttg
     4801 ccgagctgga ttacaacata ttccgcggcc tggcgtttgc ttccggcaac ccgatttacg
     4861 gtctgatcct taacgggatg aaagggctgt atacgcgcat tggtcgtcac tatttcgcca
     4921 atccggaagc gcgcagtctg gcgctgggct tctaccacaa actgtcggcg ttgtgcagtg
     4981 aaggcgcgca cgatcaggtg tacgaaacag tgcgtcgcta tgggcatgag agtggcgaga
     5041 tttggcaccg gatgcagaaa aatctgccgg gtgatttagc cattcagggg cgataatccc
     5101 ttccgtttaa aaagcaaacc cctcaaacga ggggtttttt gttgttttta cagatttccc
     5161 attcttggcg ggcaacgttc cagcaactcg acgctgccat cttcgttttg ctgttccagc
     5221 atcacatcaa atccccacag gcgatgcaca tgcttcagca cttctttgcg cccccgatcc
     5281 agcggtgcgc gattatgtgg aatgtaacgc agcgtcagcg aacggtcacc gcgcaaatcc
     5341 acgttccaga tctgaatatt cggctccaga ttacttaagt tatattgcga cgataaccgg
     5401 ttacggatct cccgataacc ttcttcatta tgaatagcgg aaatctccag ataattatgc
     5461 cgatcgtcat ccagcacggt gaagaagcgg aaatcacgca tcactttcgg tgacagaaac
     5521 tggctgataa aactctcatc tttgaaatca cgcatcgcga aatgcagcgt ttccagccag
     5581 tcggaaccgg cgatatccgg gaaccagtat ttgtcttctt ccgttggcga ctgacaaatc
     5641 cgtttaatat cctggaacat ggcgaacccg agggcatacg ggttgatgcc gctgtaccac
     5701 gggctgttat aggggggctg gaagaccaca ttggtgtggc tgtgcaaaaa ctccagcata
     5761 aaacgttccg ttactttccc ttcatcatac agatggttaa ggatggtgta gtgccagaag
     5821 gtggcccagc cttcgttcat cacctgagtc tgtttttgcg gataaaaata ctggctcacc
     5881 ttacgcacaa tacgcaggat ttcacgctgc catgattcca gcagtggcgc atttttctcc
     5941 ataaaataga gcaggttttc ttgtagttcg gacggatagc ggcgcgcttc agcaaccgtt
     6001 ttctcttcct cgcgcttcgg cagggtacgc cagagcatat tgacctgact ttgtagatac
     6061 tcttcgcgac ttttctgccg ggctttctct tcttgcagcg agattttttg cgggcgtttg
     6121 taccggtcca cgccgtagtt catcagcgcg tggcacgagt ccagaagccg ttctacttca
     6181 tccacgccat aacgttcttc gcactcggta atatatttac gggcaaaaat cagataatcg
     6241 acaatcgaac tggcgtcggt ccaactgcgg aataagtaat tgtttttaaa gaaagagtta
     6301 tgcccatagc aggcgtgtgc catcaccagc gcttgcatgg taatggtgtt ctcttccatc
     6361 aggtaagcga tacacgggtt agagttaatg acgatttcat aggccagtcc ttgctgaccg
     6421 tgcttataca gccgttcagt ctcgataaac tttttaccga atgaccagtg cggatagtta
     6481 attggcatgc cgacgctgga gtaggcatcc atcatctgtt ctgaggttat cacttcaatc
     6541 tggtgcgggt aggtatccag ccggtagagt ttcgccaccc ggtctatctc tgccagataa
     6601 acatccagca ggtcgaacgt ccagtcgggt ccatcgctca accgtgtggt gtccttattc
     6661 atagaatcga tcgtcgccat acgcgcacct cattgttgtc ggcgctctct gtgtggagca
     6721 cctcatttca agcatagaac acctgttaaa aaccgcgtcg ccggagaatt tttttctttg
     6781 cgatttctta ttatcagagt gccactaatc cgcttctgaa cggaatttta tgctggataa
     6841 aaagggcgtt cagcaggaga tactaaagac gccatattgc cgcagagtca gggagatgtg
     6901 agccagctca ccataaaaaa gctgtatgtt gaataatatt ttcaactgag ttatcaagat
     6961 gtaattagat tattattctt ttactgtatc taccgttatc ggagtggcta tgcgagttgt
     7021 catactggga agtggtgtgg taggcgttgc cagcgcctgg tacttaaatc aggcaggaca
     7081 tgaggtcacc gtcattgatc gggagccggg ggccgccctg gaaaccagcg ccgcgaatgc
     7141 cgggcaaatc tcccccggat atgctgcacc gtgggcggca ccaggtgtgc ctttaaaagc
     7201 gatcaaatgg atgttccagc gccatgcgcc gctggcggtt cgtctcgacg gtacgcagtt
     7261 tcagttgaaa tggatgtggc aaatgttacg taactgcgac accagccact acatggaaaa
     7321 caaagggcgg atggtgcgtc tggcggaata cagccgtgat tgcctgaaag cattgcgcgc
     7381 cgaaaccaat attcagtatg aagggcgtca gggtgggacg ctgcaactgt tccgtaccga
     7441 acaacagtat gaaaatgcga cccgcgatat cgtcgtgctg gaagatgccg gcgtaccgta
     7501 tcagctgctg gaatccagcc gcctggcgga agtggagcca gcgctggcag aagtagcgca
     7561 caaactgacg gggggtctgc aactgcccaa tgatgaaacc ggagactgcc agctgtttac
     7621 ccagaatctg gcgcggatgg cagagcaggc gggggttaaa ttccgcttta atacgcccgt
     7681 tgaccaactg ctttgcgacg gcgagcaaat ctacggcgtg aagtgtggcg atgaagtgat
     7741 taaggccgat gcgtatgtga tggcgtttgg ttcttactcg acggcgatgc tcaaaggcat
     7801 tgttgatatt ccggtgtatc cgctgaaagg ctactcgctg actattccaa ttgcgcagga
     7861 agatggtgcg ccagtatcca ccattcttga tgaaacctac aaaatcgcca ttacccgttt
     7921 cgataaccgc attcgtgttg gcggaatggc ggaaattgtt ggttttaaca ccgagctgtt
     7981 gcaaccgcgt cgtgaaacgc tggaaatggt ggttcgcgat ctctatccac gcggcggtca
     8041 tgtcgagcag gcgactttct ggacgggttt gcgcccgatg acgccagacg gtacgccggt
     8101 tgtcgggcgt acacgcttta aaaatctgtg gctgaatacc ggtcacggca cgctcggctg
     8161 gacgatggct tgcggttccg gtcagttgtt aagcgatctg ctctctggtc gcacgccagc
     8221 gatcccatat gaggatctaa gcgtagcgcg ctacagccgt ggatttacgc catcacgtcc
     8281 gggccattta catggcgcac acagctaagg aaacgagatg acccgtccga tacaggccag
     8341 cctcgatctg caggcattaa aacagaatct gtccattgtc cgccaggccg cgccgcacgc
     8401 gggtggtaaa agcgaacgct tacgggcatg gtattgagcg tatctggagc gcgctcgggg
     8461 ccaccgatgg ctttgcatta cttaacctgg aagaggcaat aacgttacgt gagcgcggct
     8521 ggaaggggcc gatcctgatg ctggaaggat ttttccatgc tcaggatctg gagatttatg
     8581 accagcaccg cctgaccacc tgcgtacaca gcaactggca gctcaaagca ctgcaaaatg
     8641 cgcggctaaa agcaccgttg gatatttatc ttaaagtgaa cagtgggatg aatcggttgg
     8701 gcttccagcc cgatcgcgtg cttaccgtct ggcagcagtt gcgggcaatg gcgaatgttg
     8761 gcgagatgac cctgatgtcg cattttgccg aagcggaaca tcctgatgga atttccagcg
     8821 cgatggcgcg tattgagcag gcggcggaag ggctggagtg tcggcgttcg ttgtccaatt
     8881 cggcggcgac tctgtggcat ccggaagcgc attttgactg ggttcggcct ggcattattt
     8941 tgtatggcgc ttcgccgtcc ggtcagtggc gtgatatcgc caataccgga ttacgtccgg
     9001 tgatgacgct aagcagtgag attattggtg tccagacgct aaaagcgggt gagcgtgtgg
     9061 gctacggcgg tcgctatact gcgcgcgatg aacagcgaat cggcattgtc gccgcagggt
     9121 acgccgacgg ttatccgcgc cacgcgccta ccggtacccc tgttttagtg gacggcgtgc
     9181 gcaccatgac ggtggggacc gtctcgatgg atatgctggc ggtcgattta acgccttgcc
     9241 cgcaggcggg tattggtacg ccggttgagc tgtggggcaa ggagatcaaa attgatgatg
     9301 tcgccgccgc tgccggaacg gtgggctatg agttgatgtg cgcgctggcg ctacgcgtcc
     9361 cggttgtgac ggtgtaactt gttgtaagcc ggatcgtagg caacgtcttc tgggtgcaaa
     9421 aaaaatcatc catccggctg gtcagcaact gtagttgtta atgtgacaga gccattgccc
     9481 atgatagtgt ccattaaaag gatggacact atttccccgg aacctgaact caccgcacag
     9541 gggttctaca taaaacgctt acgcttcatt gttgactcgg agtcgacttc agataaatca
     9601 cgctttaccc ttgatggagc ctgtacatag atttgtgtaa ttgcctgatt ttgatatgtt
     9661 caattcaaca tcaaatgaag gttaaattat ggacgacaaa caattgcagg ctcaggctgc
     9721 gttcagcaaa gcatcgcaac cggcgataga tgcttcatta aatttaagat tcagcttcct
     9781 cttcagccac ccgtacgcca atcttcaaca cttcattatc ttctttctcg gccaccgtcc
     9841 agatcatccc ggcaaactct acctggtcac cgacaaccgg tgccgcgcct aacaactgct
     9901 ggacaatttc acccagcgtt tgctgcttat cacgatattc tcgcccgtct tccaggccat
     9961 atatcagcgc aacatcagca tatttggcgc tggcttcgag aatgaagtca ccaaagaagc
    10021 gttgatccag cgcgaccggc ggcgactggc tgaacagttt accgagcgcc ggaagatcgc
    10081 gttcccgacc aattacacac aacacatcgc cttcgcgcag tcgggtgctg ccggtaggat
    10141 gaagcaactg gttatcacga aacagtgccg caatacgcgt ctcttttggc atatgcaaat
    10201 cgcgcagtgc cgcgcccacg caccatttat cggcactcaa ttgataaaca aactgctccc
    10261 acggattttc cggatgaata tccaggccaa cgcgtgacac cggacgtccc actggcggaa
    10321 ccaccacttt ggctttttta gccgcccacg agagtgatgt tccctgcaag agcagtgaaa
    10381 ccagaaccac aaagaaggcg acattaaaga acagacgtgc attctccagc cccgccatca
    10441 tcgggaacac ggccaggatg attggcaccg cgccgcgtaa tcctacccag ctgataaaca
    10501 cgcgctcacg cagattgaaa ccgcggaagg ggagcaatcc agcaaatacc gaaaggggac
    10561 gggcgaagaa tatcatccat gccgacaaaa tgagcgccgg aatggcaata ggcagcagat
    10621 cgcttgggtt aaccaatagc cccagcacca ggaacatggc gatttgcgcc agccaggcga
    10681 ggccgtcgaa attttgcagg atgccgtagc ggttgcgaat cggccgatta cccagcagaa
    10741 aaccgcacag ataaacagcc agaataccgc tgccttccag cgccgtggtt aaagcaaaaa
    10801 ttaaaatacc gccgcttaat gccagcaatg gatataatcc ggcaggcagg gcgatgcgat
    10861 taatcatttg cagcagtaaa taaccaccgc caagtccgat gacaatcccg aggccaaatt
    10921 gctgcagaat atcgaccacg aacatccaac tgacactgct ttcatgttgc tggatcatcg
    10981 caatcagggt aatcgtcaga aagaccgcca ttggatcatt actgccggat tcaatttcca
    11041 gcgtcgagcc aacacgttcg ttaagcccct taccacccag cagagaaaag accgctgcag
    11101 catcggtaga gccgacgata gcgccgatta ataagccttc aatcaaatca agattaaaca
    11161 gccacgccgc catcatgccg gttaaaccag aggtgataag cacgcccagc gtcgccagcg
    11221 acagtgccgg tcctaacgcc acacgaaagg aactggcctg agtgcgcatc ccgccgtcga
    11281 gcaaaataat cgccagtgcc aggttactta ccatgtaggc gaaggggtaa ttatcaaacg
    11341 ggataccgcc gacgccatcg actcctgcca gcatgccgat cgccagaaaa ataaccagaa
    11401 taggaatgcc aagacgggaa gaaaatgaac taagtaatat actgctggtg acaaggatgg
    11461 atcctaagat gaaaaggcta attattgttg tggcatccaa cggtcggtta ctcctgatta
    11521 cgctgtctct tatataaacc ctaccatatt agcggcagag acagcgtttt acttagccct
    11581 gaagcgtgat ttttttacat tttaagaaca ggatgaccgc taatcgtcaa ctgagtgcct
    11641 tcccgggtgt tattcagaat ggcatgtgcg cccaacggca gcgtaaccgt gcgttgttca
    11701 tgaccaaaat cgaggccggt aatgagtgga atcgacaggc gggaacgcaa aaacgcgtac
    11761 actgactcca ggttgtaacc tgcgtcataa tcattgggcg tgctgccgct aaagctaccg
    11821 agaataatcg ccttctgacg tggcaaaatt cccgcatgat agagctgcaa cagcatacgt
    11881 tcgacgcgga aagggtgctc gttaatatct tccagtacca ggataccgtt ctcaattttt
    11941 ggcatccacg gtgtaccaat cagtgaaatc agcatcgcaa gattgcctcc ccacaacgtg
    12001 ccttcggtct gacatgtcgg gccttcccct tgccattcaa tggtgaaggt tttattgcgt
    12061 aacgccagcc agaaatggtg ctcggtaaag gcgttcagtt catccgcacc aaagtttact
    12121 accagcatgg ggccgctaaa ggtgatgaca ttgccttgcg ccagaagacc gcactgaatg
    12181 gcggtaaaat cgctatgtcc gcaaatgagt aacgggtcat gttgttggcg agccaccagt
    12241 gcctgccagt caatatctgc cagtaaacga ctggcaccgt aaccgccgcg tacagccagc
    12301 acgatggtgt tgggtgtagt cagtctggca agggaattga gatcttccag acgctccgtt
    12361 tccgtacccg caaaacgctc acaacgacgg gcaataacct cgacgttatt gacttgatgc
    12421 cccgcgtcgg taaggcgctg gataccacgc agcgcggcgt gctgtttaat gctgtaaccc
    12481 gatggggcaa ttaagtgaaa cagagacatg gcaattcctt gctgacaaca gaaacgaaat
    12541 gtatatcatg ccgcttaggt gtgccgttgt cacctcaacg gcgattccag gctataagga
    12601 tagaagaagt gaaattgaga tggtttgcct ttttgattgt gttattagcg ggttgttcat
    12661 caaagcatga ctatacgaac ccgccgtgga acgcgaaagt tccggtgcaa cgtgcgatgc
    12721 agtggatgcc aataagccag aaagccggtg cagcctgggg cgtcgatcca caattgatca
    12781 cggcgattat cgctatcgaa tcgggtggta atccgaacgc ggtgagtaaa tcgaatgcca
    12841 ttggtttgat gcagttaaaa gcttcaacct ccggacgtga tgtttatcgc cgtatgggct
    12901 ggagtggtga gccgacgacc agcgagctga aaaatccaga gcgtaatatt tcaatggggg
    12961 cggcttacct gaatattctg gaaaccggcc cgctggcagg cattgaagat ccgaaggtac
    13021 tgcaatatgc gctggtggtg tcatacgcta acggggcagg tgcgctgcta cggactttct
    13081 cgtcagatcg gaaaaaggcg atcagcaaaa tcaacgattt ggatgctgac gagttcctcg
    13141 atcacgtagc gcgcaatcat cctgcgccgc aggctccgcg ctatatctac aaacttgagc
    13201 aggcactgga cgcgatgtaa atcagtcgcg tactttgtcc gctttctccc gggcttcctg
    13261 ctcgagagag aaaataatcc gttgtaattg ccgctccacc gtcgggctga cgttaagaaa
    13321 acggaagctc agacggggag tggtgatggt ttcattcttg ccatcaatca ctttgcgctc
    13381 gctgatggag attaactggg cgtcaaagtg aaaaacaccc cattgcccca tgttgacttc
    13441 aatctgagcg aagcgcatgc cttcttgtaa ttcggcaggc tttgctgttt ccagtaatgc
    13501 gcccatgccg cctaacgaca aatcatacag gcggaaacgt aacgtactgt tatccgccag
    13561 tttggtctgg caaaaataag gcggatggag tggggcggag atgcggaaat atcggcgtcg
    13621 ttgtacaaac cataaggtgg gaggcggtac ggtaataaat gccggaagct gcaagtattc
    13681 actctgctgt agttgttcaa cagtaaactc gactttcgca ccctgagttt cggcggtaat
    13741 ggtaatatgc tgcgccttta gcacggcgat gttgtcttcg gcttgactgc cgaaatccag
    13801 caccagttta tccggggtta ttgccagtat tttgctgatc agctgcccgc cattccaact
    13861 gagacgcaaa ggaattgcgg ctttgtgcaa atcgcgtaac acgcccagga cggctaacgg
    13921 attttgtttc aggaactgct catggtaatg actcacgcgg aaaaactcct gactgacaaa
    13981 ctgtctttgg tttatcggtc acagttaaca aaacttaata caaatgcgtg aatatttttt
    14041 acatgttgtt cttaaatcag ccgacatacg cccagcatcg atcccgccct tgcctatact
    14101 tagagcgttg acgtaagcat ttcttgcgtc cgattcatcg aaacgagggc ctgaacatgg
    14161 gaattattgc ctggattatt tttggcctga tagccggcat tatcgccaag ctaatcatgc
    14221 cggggcgtga tggtggtgga tttttccaga cctgtattct cgggatagtc ggtgcggtgg
    14281 tcggcggctg gctggcgacc atgtttggca ttggcggctc catcagcggt tttgatttgc
    14341 acagcttcct ggtggcggtg gtgggagcta ttctcgttct gggcgtattc cgcctgctgc
    14401 gaagagaata agattttcat aaggcggata gcgatacaga tgccgc
//
LOCUS       DADMHM010000096        14388 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.097, whole genome shotgun sequence.
ACCESSION   DADMHM010000096 DADMHM010000000
VERSION     DADMHM010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14388)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14388)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14388
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.097"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            36..227
                     /locus_tag="JN125_002470"
     CDS             36..227
                     /locus_tag="JN125_002470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000886534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate transporter"
                     /protein_id="HAY8872226.1"
                     /translation="MLDNLIGAPPFWQLAHSSADNFPALTVSHFITANLLPVMLGNII
                     GGAVLVSMCYRAIYLRQES"
     gene            complement(265..1326)
                     /locus_tag="JN125_002471"
     CDS             complement(265..1326)
                     /locus_tag="JN125_002471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HAY8872227.1"
                     /translation="MLEMLMQWYRRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLV
                     AIVLAYLLEWPTVRLQSIGCSRRWATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRD
                     MPGMLNKLSDFAATLPRRYPALMDAGIIDAMAENMRSRMLTMGDSVVKISLASLVGLL
                     TIAVYLVLVPLMVFFLLKDKEQMLNAVRRVLPRNRGLAGQVWKEMNQQITNYIRGKVL
                     EMIVVGIATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGT
                     EFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPL
                     ATLIKAVIHAWPDGQIAQE"
     gene            1539..3002
                     /gene="bepA"
                     /locus_tag="JN125_002472"
     CDS             1539..3002
                     /gene="bepA"
                     /locus_tag="JN125_002472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-barrel assembly-enhancing protease"
                     /protein_id="HAY8872228.1"
                     /translation="MFRQLKKNLVATLIAAMTIGQVAPAFADNADTLPDMGTSAGSTL
                     SIGQEMQMGDYYVRQLRGSAPLINDPLLTQYINSLGMRLVSHANSVKTPFHFFLINND
                     EINAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHLTQRHLARAMEDQQRSAPLT
                     WVGALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRSGFD
                     PQAMPTFLEKLLDQARYSSRPPEILLTHPLPESRLADARNRANQMRPMVVQSSEDFYL
                     AKARTLGMYNSGRNQLTSDLLDEWAKGNVRQQRAAQYGRALQAMEANKYDEARKTLQP
                     LLAAEPGNAWYLDLATDIDLGQNKANEAINRLKNARDLRTNPVLQLNLANAYLQGGQP
                     QEAANILNRYTFNNKDDSNGWDLLAQAEAALNNRDQELAARAEGYALAGRLDQAISLL
                     SSASSQVKLGSLQQARYDARIDQLRQLQERFKPYTKM"
     gene            3023..3382
                     /gene="arsC"
                     /locus_tag="JN125_002473"
     CDS             3023..3382
                     /gene="arsC"
                     /locus_tag="JN125_002473"
                     /EC_number="1.20.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311384.1"
                     /note="This arsenate reductase requires both glutathione
                     and glutaredoxin to convert arsenate to arsenite, after
                     which the efflux transporter formed by ArsA and ArsB can
                     extrude the arsenite from the cell, providing resistance;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase (glutaredoxin)"
                     /protein_id="HAY8872229.1"
                     /translation="MTKQVKIYHNPRCSKSRETLNLLKENGVEPEVVLYLETPADAAT
                     LRDLLKMLGMNSARELMRQKEDLYKELNLADSSLSEEALIQAMVDNPKLMERPIVVAN
                     GKARIGRPPEQVLEIVG"
     gene            complement(3520..4266)
                     /gene="hda"
                     /locus_tag="JN125_002474"
     CDS             complement(3520..4266)
                     /gene="hda"
                     /locus_tag="JN125_002474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaA inactivator Hda"
                     /protein_id="HAY8872230.1"
                     /translation="MVNFSRFCEILVEVSLNTPAQLSLPLYLPDDETFASFWPGDNSS
                     LLAALQNVLRQEHSGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVP
                     EVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNL
                     GLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRT
                     LFMTLDQLDRASITAQRKLTIPFVKEILKL"
     gene            complement(4316..5605)
                     /gene="uraA"
                     /locus_tag="JN125_002475"
     CDS             complement(4316..5605)
                     /gene="uraA"
                     /locus_tag="JN125_002475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil permease"
                     /protein_id="HAY8872231.1"
                     /translation="MTRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLFHINPA
                     TVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFC
                     LVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPDSKTII
                     ISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTL
                     YTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVI
                     SGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVM
                     GGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAELKGM
                     ALATIVGIGLSLIFKLISVLRPEEVVLDAEEADITDK"
     gene            complement(5691..6317)
                     /gene="upp"
                     /locus_tag="JN125_002476"
     CDS             complement(5691..6317)
                     /gene="upp"
                     /locus_tag="JN125_002476"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HAY8872232.1"
                     /translation="MKIVEVKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEAT
                     ADLETEKVTIEGWNGPVEIDQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGMY
                     RNEETLEPVPYFQKLVSNIDERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLV
                     AAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGTK"
     gene            6641..7678
                     /gene="purM"
                     /locus_tag="JN125_002477"
     CDS             6641..7678
                     /gene="purM"
                     /locus_tag="JN125_002477"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HAY8872233.1"
                     /translation="MTDKTSLSYKDAGVDIDAGNALVGRIKGVVKKTRRPEVMGGLGG
                     FGALCALPQKYREPVLVSGTDGVGTKLRLAMDLKRHDTIGIDLVAMCVNDLVVQGAEP
                     LFFLDYYATGKLDVDTASAVISGIAEGCLQSGCSLVGGETAEMPGMYHGEDYDVAGFC
                     VGVVEKSEIIDGSKVSDGDVLIALGSSGPHSNGYSLVRKILEVSGCDPQTTELDGKPL
                     ADHLLAPTRIYVKSVLELIEKVDVHAIAHLTGGGFWENIPRVLPDNTQAVIDESSWQW
                     PEVFNWLQTAGNVERHEMYRTFNCGVGMIIALPAPEVDKALALLNANGENAWKIGIIK
                     ASDSEQRVVIE"
     gene            7678..8316
                     /gene="purN"
                     /locus_tag="JN125_002478"
     CDS             7678..8316
                     /gene="purN"
                     /locus_tag="JN125_002478"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HAY8872234.1"
                     /translation="MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLE
                     RARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAG
                     RLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGD
                     TEDDVTARVQTQEHAIYPLVISWFADGRLKMHENAAWLDGQRLPPQGYAADE"
     gene            8488..10554
                     /gene="ppk1"
                     /locus_tag="JN125_002479"
     CDS             8488..10554
                     /gene="ppk1"
                     /locus_tag="JN125_002479"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 1"
                     /protein_id="HAY8872235.1"
                     /translation="MGQEKLYIEKELSWLSFNERVLQEAADKSNPLIERMRFLGIYSN
                     NLDEFYKVRFAELKRRIIISEEQGSNSHSRHLLGKIQSRVLKADQEFDGLYNELLLEM
                     ARNQIFLINERQLSVNQQNWLRHYFKQYLRQHITPILINPDTDLVQFLKDDYTYLAVE
                     IIRGDTIRYALLEIPSDKVPRFVNLPPEAPRRRKPMILLDNILRYCLDDIFKGFFDYD
                     ALNAYSMKMTRDAEYDLVHEMEASLMELMSSSLKQRLTAEPVRFVYQRDMPNALVEVL
                     REKLTISRYDSIVPGGRYHNFKDFINFPNVGKANLVNKPLPRLRHIWFDKAQFRNGFD
                     AIRERDVLLYYPYHTFEHVLELLRQASFDPSVLAIKINIYRVAKDSRIIDSMIHAAHN
                     GKKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFSAPGLKIHAKLFLISRKENGEVV
                     RYAHIGTGNFNEKTARLYTDYSLLTADARITNEVRRVFNFIENPYRPVTFDYLMVSPQ
                     NSRRLLYEMVDREIANAQQGLPSGITLKLNNLVDKGLVDRLYAASSSGVPVNLLVRGM
                     CSLIPNLEGISDNIRAISIVDRYLEHDRVYIFENGGDKKVYLSSADWMTRNIDYRIEV
                     ATPLLDPHLKQRVLDIIDILFSDTVKARYIDKELSNRYVPRGNRRKVRAQLAIYDYIK
                     SLEQPE"
     gene            10559..12100
                     /gene="ppx"
                     /locus_tag="JN125_002480"
     CDS             10559..12100
                     /gene="ppx"
                     /locus_tag="JN125_002480"
                     /EC_number="3.6.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exopolyphosphatase"
                     /protein_id="HAY8872236.1"
                     /translation="MPIHDKSPRPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQR
                     VHLADGLGPDNMLSEEAMTRGLNCLSLFAERLQGFSPASVCIVGTHTLRQALNATDFL
                     KRVEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI
                     LVESRRMGCVSFAQLYFPGGVINKENFQRARMAAAQKLETLTWQFRIQGWNVAMGASG
                     TIKAAHEVLMEMGEKDGIITPERLEKLVKEVLRHRNFASLSLPGLSEERKTVFVPGLA
                     ILCGVFDALAIRELRLSDGALREGVLYEMEGRFRHQDVRSRTASSLANQYHIDSEQAR
                     RVLDTTMQMYEQWREQQPKLAHPQLEALLRWAAMLHEVGLNINHSGLHRHSAYILQNS
                     DLPGFNQEQQLMMATLVRYHRKAIKLDDLPRFTLFKKKQFLPLIQLLRLGVLLNNQRQ
                     ATTTPPTLTLITDDSHWTLRFPHDWFSQNALVLLDLEKEQEYWEGVAGWRLKIEEEST
                     PEIAA"
     gene            complement(12190..14379)
                     /gene="pdeF"
                     /locus_tag="JN125_002481"
                     /pseudo
     CDS             complement(12190..14379)
                     /gene="pdeF"
                     /locus_tag="JN125_002481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416998.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-guanylate-specific phosphodiesterase
                     PdeF"
BASE COUNT         3791 a         3687 c         3594 g         3316 t
ORIGIN      
        1 cgacgggact ttttataccc cgcaggggtc ataacatgct tgacaactta ataggggcac
       61 cccccttctg gcaactggcg cacagtagcg cagacaattt tccggcactg acggtcagcc
      121 attttattac cgccaatctg ctcccggtga tgctgggtaa tattatcggc ggtgcagtgc
      181 tggtgagtat gtgttatcgg gctatttatt tacgtcagga atcctgaaaa atcagcccgg
      241 cgaaacagtt cgtcgggctg aagattattc ttgcgcgatt tgcccatcgg gccaggcgtg
      301 gatcacggct ttgatcagcg tcgccaatgg aatggcgaag aatacgcccc agaatcccca
      361 caaaccaccg aagatcacca ccgataaaat aatcaccagc ggatgcaggt taaccgcttc
      421 ggagaacaac accggtacta gcaggttgcc gtccagcgcc tgaataatca gatacaccgc
      481 gaagcagctc cagaattccg tgcctgcgcc aaactggaat agcgccacgc caaccaccgg
      541 aatggtcacc acaaatgcgc caatgtacgg aataagaacc gagaagccga ccagcaccgc
      601 cagcagcagc gaatagttca gcccaaagag caagaacccc agccaggtgg cgatccccac
      661 cacgatcatc tccagcactt tgccgcggat atagttggtg atttgttgat tcatctcctt
      721 ccacacctgt cctgccagtc cacggttgcg cggcagcacc cgacgaacgg cgttcagcat
      781 ctgctctttg tctttcagca ggaagaagac catcaatggc accagcacca gatagacggc
      841 aatggtcagc aaaccgacca gcgaggcgag ggaaattttc accaccgaat cgcccatggt
      901 cagcatccga ctgcgcatat tttcggccat tgcatcaata atgcccgcgt ccattaacgc
      961 cggatagcgg cgcggcaacg tggcggcaaa gtcagaaagc ttattgagca tccccggcat
     1021 atcgcggatt aagtagatgc cctgttgcca ggcgataggc agtaccacga acgccatcag
     1081 tagcaatata ccgacaaaaa ccaccaatac aatcgacgtc gcccagcggc gggagcagcc
     1141 aatagattgc aggcgcacgg ttggccattc cagcaaatag gccagcacaa tagccaccag
     1201 caacggagca agcaggccac taaagaaaaa gataatgcca aatccggcaa ctaaaataac
     1261 cagcaaggca atcgcttccg ggtcgctaaa acggcggcga taccattgca tcaacatttc
     1321 gagcataaaa accttccctg aacctcaaga gcgggattgc gatccgcaat tgtatcgaaa
     1381 tgtcacaaaa aagacttcgc tttttatgac ggattcagga aactgaaaag tcatttgagt
     1441 gggctaatct tcgccgttac actcaaaggc ggcgcggtgg gaacgatatt tcacagtatc
     1501 ggtcaaatga ctatcttcag aaatacagga tagaggttat gttcaggcag ttgaaaaaaa
     1561 acctggttgc aaccctcatt gctgctatga ccattggtca ggtagccccg gcgtttgccg
     1621 acaacgcaga caccttgccg gatatgggaa cctccgcagg aagcacgctt tccattggtc
     1681 aggaaatgca gatgggcgac tattatgtcc gccagctacg cggcagcgcg ccgttaatta
     1741 atgacccgct gttaacgcaa tatattaatt cgctggggat gcgtctggtt tcgcatgcca
     1801 attcggttaa gacaccgttt catttttttc taatcaacaa cgacgaaatt aacgcctttg
     1861 ctttctttgg cggcaacgtg gtgctgcact ctgccctgtt ccgttattcc gataacgaaa
     1921 gtcaactggc ttcagttatg gcgcacgaaa tctcccacct cacccaacgt cacctggcgc
     1981 gagcgatgga agatcagcag cgcagcgcgc cgctgacctg ggtcggcgcg ttaggttcta
     2041 ttttactggc gatggccagt ccgcaggcgg ggatggcggc gctgaccggt acactggcgg
     2101 gaacgcgtca ggggatgatc agtttcaccc agcaaaatga acaggaagcg gaccgcattg
     2161 gtattcaggt gctgcaacgc tcgggattcg atccgcaggc gatgccaacc ttcctcgaaa
     2221 aattactcga tcaggcgcgt tactcctcgc gcccgccgga aattttattg actcacccgt
     2281 tgccggaaag tcgtctggca gatgcccgca accgtgctaa tcagatgcga ccgatggtgg
     2341 tgcagtcgtc ggaagatttc tatctggcga aagcgcgcac actggggatg tataattccg
     2401 gacgtaacca gctcaccagt gatttgctgg atgaatgggc gaaaggaaac gttcgtcagc
     2461 aacgagcggc gcaatatggt cgtgctttac aggcgatgga agccaataaa tacgacgagg
     2521 cgcgtaaaac gctgcaaccg ttactggcgg cagaacctgg caacgcatgg tatctcgatc
     2581 tggctaccga tatcgatctt gggcaaaaca aagccaatga ggcaatcaat cgcctgaaaa
     2641 atgcccgtga tttgcgcacc aatccggtgt tgcagctcaa cctggcaaac gcttatctgc
     2701 aaggcggtca accacaagaa gcggccaata ttctcaatcg ctacaccttt aataataaag
     2761 atgacagcaa cggctgggat ttactggcac aggcggaagc cgcgctaaat aaccgcgatc
     2821 aggagctggc tgcgcgagca gaaggttatg cgctcgccgg acgactcgat caggccattt
     2881 cgctgttgag tagcgccagt tcgcaggtga aattaggcag cctgcaacaa gcgcgttacg
     2941 atgcgcgcat cgaccagttg cgccagctgc aggaacgctt taagccttat accaagatgt
     3001 aattcgcatt aaaggaagaa caatgaccaa acaggtaaaa atctaccata acccacgctg
     3061 ttcaaagagc cgggaaacgc tgaacctgct gaaagaaaac ggcgtggagc cagaagtggt
     3121 actctacctt gagacacccg ccgatgcggc aacgctgcgc gatttgctga aaatgctggg
     3181 gatgaatagc gcccgtgaat tgatgcgcca gaaagaggat ctttataaag aactgaacct
     3241 ggctgacagt tcgcttagcg aagaggcgct gattcaggca atggtggata atccgaagct
     3301 gatggagcgc ccgattgtgg tcgcgaatgg caaagcgcgg attggtcgtc caccggagca
     3361 ggtactggaa atcgtgggtt aagatgtgct ccatcgctag ttgaagcaca ttgccggatg
     3421 cgacgcttgc catgtcttat ccggcctacg aatactatgg attaacttcg cgtagttcgg
     3481 ataaggcgtt cgcgccgcat ccgacaataa acaccttatc tacaacttca gaatttcttt
     3541 cacaaacgga atggtcagct tacgttgcgc ggtaatcgac gcacgatcca actgatccaa
     3601 cgtcataaat agcgtgcgca tttctctgtc gagccgcttc agcaagaaac gccccacatc
     3661 ttccggcagt tcaaaaccac gcaaacgcgc gcgtaactgt agcgcctgca acttatcttc
     3721 atcagaaagt ggctgcaatt tgtagatctg cccccagtcg agtcgcgacg cgagatccgg
     3781 taatcccaga ttcaactgcc gcggtggacg atcgccggtg atcaacaacc gtgttttgcc
     3841 cgattccaga attcgattgt agagatcgaa aatcgccatc tcccacaact catcgcctgc
     3901 aatacactca atgttgtcga tacaaaccag cgacaaatgc tccataccgt cgagcacttc
     3961 cggaacaaac caggtgcgtt tatccagcgg gacatagccc accgcatcgc cacgctgcga
     4021 caattccgcg caagccgcgt gcagcagatg gctgcgcccc gcgccttcgc gtgcccagag
     4081 atagatgtaa ccgctatgtt cctgacgcag cacgttttgc agcgcggcca gtaaagagga
     4141 gttatccccc ggccagaaac ttgcaaaggt ttcgtcgtca ggaagataaa gtggcaaaga
     4201 gagctgtgcc ggtgtgttca gagatacctc aaccaggatt tcacaaaatc gcgagaagtt
     4261 taccacagaa tcccatgatg tttgaaccgg gcagcaacac tgcccggtcg gtacattatt
     4321 tgtctgttat atccgcctct tctgcgtcca gcaccacttc ttcagggcgc agcacactga
     4381 tcagtttgaa aatcaaactt aagccgatac cgacgatggt cgccagcgcc atacctttta
     4441 actccgccgc gccgatgttt accttcgcgc cactgacgcc gatgatcaaa atcacggaag
     4501 tcaggatcag gttctgtgct ttgttgtaat ccactttcga ttcgatcaaa acacgaatac
     4561 cggaagcacc gatgacacca taaagcagca gtgaaacgcc gcccatcacc ggcaatggga
     4621 tcatctggat agcggcagcc agtttaccga cgcaggaaag caggatagcg aaaatcgccg
     4681 ccccgccgat aacccaggta ctgtaaacac gggtgatcgc catcacgcca atgttttctc
     4741 cgtaagtggt atttggcgtg gagccaaaga agccggagat cacggtcgac aggccgttag
     4801 caaacatcga acggtgcaga cctggatcgc gcagcagatc ttttttgacg atattagccg
     4861 ttactaccag gtgccctacg tgttcggcaa taaccactaa cgccgctggc agaatagtca
     4921 gaatggcaaa ccactcgaag cgcggcgtat agagggttgg cagcgcaaac cagtgagcat
     4981 taataatcgg cgtggtatcg acaattccca ttgcgaaaga gagcgcgtag cccaccagca
     5041 cgccaattaa aatcgggata attgccagga aaccacgaaa cagcacagaa cctaaaaccg
     5101 tgaccgccag ggtggtaata gagatgatga tggttttgga gtctggcgtt tgcccttcag
     5161 ccgggagtaa acccgccata ccggcagcta cgcccgccag ctccagaccg atgacggcaa
     5221 cgattgcgcc cattgccgca ggtggaaaca gcacgtccag ccagccggtc cccgctttct
     5281 tcacgataaa agaaaccagg cagaacagca cgccgcacat aataaagccg cccagcgcga
     5341 cttcataccc taacggcaac agtaacaata ccggtgaaat aaaggcaaag ctggaaccaa
     5401 gataagccgg aattttccct ttacagatga agagatacag cagcgttcca ataccgttaa
     5461 ataacagtac agtcgccggg ttaatatgaa ataagacggg caccaggacg gttgcaccaa
     5521 acatggcgaa caaatgttgc aaactaagcg ggattgtctg taaaagtggc ggtctttcac
     5581 tcaccccgat agcacggcgc gtcatagtat tatcctctgt attatgtgtt ataggcgctt
     5641 tactcaaaaa aaagccgact cttaaagtcg gctttaatta tttttattct ttatttcgta
     5701 ccaaagattt tgtcaccggc atcgccgagg cccggaataa tgtatccgtg ctcgttcagt
     5761 ccctgatcaa tcgatgcggt atacagttcg acgtccgggt gcgctttttc cagcgcagcg
     5821 ataccttctg gcgcagcgac cagcaccaga actttgatgc tgctgcagcc cgcttttttc
     5881 agcaggtcga tggtcgcgat aacggaacca ccggttgcca gcattgggtc aacgatcagc
     5941 gccatacgct catcgatgtt agaaaccagt ttctggaagt acggtaccgg ctccagcgtt
     6001 tcttcattac ggtacatacc gacaacgctg atgcgcgcgc tcggaacatt ttccagcaca
     6061 ccgtccatca taccaagacc cgcacgcaga attggcacaa cggtaatttt cttacctttg
     6121 atctggtcga tttctaccgg gccgttccag ccttcgatag ttactttttc cgtttcgagg
     6181 tcggcggtcg cttcgtaagt cagcaggcta cccacttcgg aagcgagttc gcgaaagcgc
     6241 ttggtgctga tatcttgctc acgcatcagt cccagcttgt gtttgacgag tgggtgtttg
     6301 acttccacga tcttcatact ctttctcctt tgaggggcag ccacaaaaaa atcgacggat
     6361 tatacctcct ttcttcaagg cggcaatatt cttttcgttg actttagtca aaatgataac
     6421 gatttgagat aaagttattt tatattcaaa tggttatgaa agaagatcat tccatccgaa
     6481 aactaacctt tgccctggca caagtcttct ttcgccgcgc gtctggggaa aagacgtgca
     6541 aaaaggttgt gcaaagcagt ctcgcaaacg tttgctttcc ctgttagaat tgcgccgaat
     6601 tttatttttc taccgcaagt aacgcgtggg gacccaagca gtgaccgata aaacctctct
     6661 tagctacaaa gatgccggtg ttgatattga cgcgggtaat gctctggttg gaagaatcaa
     6721 aggcgtagtg aagaaaacgc gtcgtccgga agtgatgggc ggtctgggcg gcttcggtgc
     6781 gctgtgtgca ttgccgcaaa aatatcgtga acccgtgctg gtttccggca ctgacggcgt
     6841 aggtaccaag ctgcgtctgg caatggactt aaaacgtcac gacaccattg gtattgatct
     6901 ggtcgccatg tgcgttaatg acctggtggt gcaaggtgca gaaccgctgt ttttcctcga
     6961 ctattacgca accggaaaac tggatgttga taccgcttca gcggtgatca gcggcatcgc
     7021 ggaaggttgt ctgcaatcgg gctgttcact ggtgggtggc gaaacggcag aaatgccggg
     7081 gatgtatcac ggtgaagatt acgatgtcgc gggtttctgc gtgggcgtgg tagaaaaatc
     7141 agaaatcatc gacggctcta aagtcagcga cggcgatgtt ctgattgcac tcggttccag
     7201 cggtccgcac tcgaacggct attcgctggt gcgcaaaatt cttgaagtca gcggttgtga
     7261 tccgcaaacc accgaacttg atggtaagcc attagccgat catctgctgg caccgacccg
     7321 catttacgtg aagtcagtgc tggagttgat tgaaaaggtc gatgtgcatg ccattgcgca
     7381 cctgaccggc ggcggcttct gggaaaacat tccacgcgta ttgccagata atactcaggc
     7441 agtgattgat gaatcttcct ggcagtggcc ggaagtgttc aactggctgc aaacggcagg
     7501 taacgttgag cgccatgaaa tgtatcgcac cttcaactgc ggcgtcggga tgattattgc
     7561 cctacctgct ccggaagtgg acaaagccct cgccctgctc aatgccaacg gtgaaaacgc
     7621 gtggaaaatc ggtatcatca aagcctctga ttccgaacaa cgcgtggtta tcgaataatg
     7681 aatattgtgg tgcttatttc cggtaacgga agtaatttac aggcaattat tgacgcctgt
     7741 aaaaccaaca aaattaaagg caccgtacgg gcagttttca gcaataaggc cgacgcgttc
     7801 ggccttgaac gcgcccgcca ggcgggtatt gcaacgcata cgctcatcgc cagcgcgttt
     7861 gacagtcgtg aagcctatga ccgggagttg attcatgaaa tcgacatgta cgcacccgat
     7921 gtggtcgtgc tggctggttt tatgcgcatt ctcagcccgg cgtttgtctc ccactatgcc
     7981 gggcgtttgc tgaacattca cccttctctg ctgccgaaat atcccggatt acacacccat
     8041 cgtcaggcgc tggaaaatgg cgatgaagag cacggtacat cggtgcattt cgtcaccgat
     8101 gaactggacg gtggcccggt tattttacag gcgaaagtcc cggtatttgc tggtgatacg
     8161 gaagatgacg tcaccgcccg cgtgcaaacc caggaacacg ctatttatcc actggtgatt
     8221 agctggtttg ccgatggtcg tctgaaaatg cacgaaaacg ccgcgtggct ggatggtcaa
     8281 cgtctgccgc cgcagggcta cgctgccgac gagtaatgcc cccgtagtta aagcgccagc
     8341 tctgccgctg gcgtttttca attcacctgt aaatcgcaag ctccagcagt ttttttcccc
     8401 cttttctggc atagttggac atctgccaat attgctcgcc ataatatcca ggcagtgtcc
     8461 cgtgaataaa acggagtaaa agtggtaatg ggtcaggaaa agctatacat cgaaaaagag
     8521 ctcagttggt tatcgttcaa tgaacgcgtg cttcaggaag cggcggacaa atctaacccg
     8581 ctgattgaaa ggatgcgttt cttggggatc tattccaata accttgatga gttctataaa
     8641 gtccgcttcg ctgaactgaa gcgacgcatc attattagcg aagaacaagg ctccaactct
     8701 cattcccgcc atttactggg caaaattcag tcccgggtgc tgaaagccga tcaggaattc
     8761 gacggcctct acaacgagct attgctggag atggcgcgca accagatctt cctgattaat
     8821 gaacgccagc tctccgtcaa tcaacaaaac tggcttcgtc attattttaa gcagtatctg
     8881 cgtcagcaca ttacgccgat tttaatcaat cctgacactg acttagtgca gttcctgaag
     8941 gatgattaca cctatctggc ggtggaaatt atccgtggag acaccatccg ttacgcgctg
     9001 ctggagatcc catcagataa agtgccgcgc tttgtgaatt taccgccaga agcgccgcgt
     9061 cgacgcaagc cgatgattct tctggataac attctgcgtt actgccttga tgatattttc
     9121 aaaggcttct ttgattatga cgcgctgaat gcctattcaa tgaagatgac ccgcgatgcc
     9181 gaatacgatt tagtgcatga gatggaagcc agcctgatgg agttgatgtc ttccagtctc
     9241 aagcagcgtt taactgctga gccggtgcgt tttgtttatc agcgcgatat gcccaatgcg
     9301 ctggttgaag tgttacgcga aaaactgact atttcccgct acgactccat cgtccccggc
     9361 ggtcgttatc ataattttaa agactttatt aatttcccca atgtcggcaa agccaatctg
     9421 gtgaacaaac cactgccgcg tttacgccac atttggtttg ataaagccca gttccgcaat
     9481 ggttttgatg ccattcgcga acgcgatgtg ttgctctatt atccttatca cacctttgag
     9541 catgtgctgg aactgctgcg tcaggcttcg ttcgacccga gcgtactggc gattaaaatt
     9601 aacatttacc gcgtggcgaa agattcacgc atcatcgact cgatgatcca cgccgcacat
     9661 aacggtaaga aagtcactgt ggtggttgag ttacaggcgc gtttcgacga agaagccaac
     9721 attcactggg cgaagcgcct gaccgaagca ggcgtgcacg ttatcttctc tgcgccgggg
     9781 ctgaaaattc acgccaaact gttcctgatt tcacgtaaag aaaacggtga agtggtccgt
     9841 tacgcacaca tcgggaccgg gaactttaac gaaaaaaccg cgcgtcttta tactgactat
     9901 tcgttgctga ccgcagatgc gcgtatcacc aacgaagtac ggcgggtatt taactttatt
     9961 gaaaacccat accgcccagt gacatttgat tatttaatgg tgtcaccgca aaactctcgc
    10021 cgtctgttat atgaaatggt agaccgcgaa atcgccaacg cgcagcaagg gctgcccagt
    10081 ggtatcaccc tgaagctaaa taaccttgtc gataaaggct tggttgatcg tctgtatgcg
    10141 gcctccagct ccggcgtacc ggttaatctg ctggttcgcg gaatgtgttc gctgatcccc
    10201 aatctggaag gcattagcga caacattcgt gccatcagta ttgttgaccg ttaccttgaa
    10261 catgaccggg tttatatttt tgaaaatggc ggcgataaaa aggtctacct ttcttccgcc
    10321 gactggatga cgcgcaatat tgattatcgt attgaagtgg cgacaccgct gctcgatccg
    10381 cacctgaagc agcgggtgct ggacatcatc gacatattgt tcagcgatac ggtcaaagca
    10441 cgttatatcg ataaagaact cagtaatcgc tacgttcccc gcggcaatcg ccgcaaagta
    10501 cgggcgcagt tggcgattta cgactacatc aaatcactcg aacaacctga ataaccctat
    10561 gccaatacac gataaatccc ctcgtccgca ggagtttgct gcggtcgatc ttggttcaaa
    10621 cagttttcac atggtcatag cccgtgtggt agatggtgcc atgcagatta ttggccgcct
    10681 gaaacagcga gtgcatctgg cggacggcct ggggccagat aatatgttga gtgaagaggc
    10741 aatgacgcgc ggtttgaact gtctgtcgct gtttgccgaa cggctacaag ggttttctcc
    10801 tgccagcgtc tgtatagtcg gcacccatac gctgcgtcag gcgctgaacg ccactgactt
    10861 tctgaaacgc gtggaaaagg tcattcccta cccgattgaa attatttccg gtaatgaaga
    10921 agcccgtctg atttttatgg gcgtggaaca tacccaaccg gagaaaggtc gcaaactggt
    10981 tattgatatt ggcggcggat ctacggaact ggtgattggt gaaaatttcg aaccgattct
    11041 cgttgaaagc cgccggatgg gttgtgtcag ctttgcccag ctttacttcc ctggcggggt
    11101 catcaataaa gagaattttc agcgcgctcg tatggcggca gcacaaaaac tggaaacttt
    11161 aacctggcaa ttccgtattc agggctggaa cgtggcaatg ggcgcttccg gtaccataaa
    11221 agccgcccat gaagtgttaa tggaaatggg cgagaaagac ggaataatta ccccggaacg
    11281 tctggaaaaa ctggtaaaag aagttttacg tcaccgtaat ttcgcatcgc tgagtttacc
    11341 gggtctttcc gaagagcgga aaacagtctt cgttcctgga ctggcgattt tatgcggtgt
    11401 gtttgatgct ttagccatcc gtgaactgcg cctttctgac ggggcgttac gcgaaggcgt
    11461 actgtacgaa atggaaggac gtttccgtca tcaggatgtg cgtagtcgca ccgccagcag
    11521 cctcgccaac cagtatcaca tcgacagcga acaggcccga cgggtgctgg ataccactat
    11581 gcaaatgtac gaacagtggc gggaacagca accgaagctg gcgcatccgc aactggaggc
    11641 gctactgcga tgggccgcca tgctgcatga ggtcgggttg aatatcaacc acagcggttt
    11701 gcatcgccac tccgcttata ttctgcaaaa cagtgacttg ccgggtttta atcaggaaca
    11761 gcagctgatg atggcgacac tggtgcgcta tcaccgcaaa gcgattaaac tcgacgatct
    11821 gccgcgcttt accttgttta agaagaaaca gttcctgcca ctgattcagc tattgcgcct
    11881 tggcgtatta ctcaacaatc aacgtcaggc aaccaccaca ccgccaacat tgacactgat
    11941 tactgatgac agtcactgga cactgcgttt cccgcatgac tggtttagtc agaatgcgtt
    12001 ggtactgctt gatctggaaa aggagcaaga atactgggaa ggcgtggctg gctggcggtt
    12061 gaaaattgaa gaagaaagta cacctgaaat cgccgcttaa tgctttgcgg gccgacgaga
    12121 aatggcggcc cgcattattc aggcactttc gcgaatgggt tcgatttcat tcaacgtatc
    12181 aattaacggc tacggcttac caataagata accctgcata taatcgatcc ccaaagagag
    12241 caccgcctcg cggatctctt cgttttcaac gtactctgcc actacccgca ttttcttcat
    12301 tcgcgccagg tggcaaatcg atgccactat ctgataatcc agactatttg acacaatatt
    12361 gcggataaaa ctgccgtcaa ttttaagcag atcggcattc acatttttaa gccgtgcata
    12421 gctggcgtag ccggtgccga aatcatcaat cgcaatctgg cagcctaatt cctgaagatg
    12481 ctgcaaggtg atttgcgcct gcttaacatt ggtcagagca ttactttcgg tgacttcaaa
    12541 aataagttgc cacgcttcaa tctgatattt agccagcaac tgacttcaaa aggaaaacga
    12601 gcctgacata ccgaggttgg agacagatta atagcaaaaa cggtgagcgg gcatcttcgc
    12661 tctgttttca gccataaatt gcagcgtatg ctcaatgacc cacatgtcga tactcgacga
    12721 taaaccaaat tcgtgcgcga ccggcaagaa gctatcgggg ctgatcagtt catcattctc
    12781 acctttcatg cgcagaagaa tttcatggta aacatcacca cgcataccgg taatcggctg
    12841 ggccatcagg aaaaaatggt tgtgttccag cgcctgctgt agtcgattca tcatcgcgac
    12901 tttatctttc aattcgcgtt gcaaatacat tgccccgcga cgctgcatat tttccggggc
    12961 gttggtcacg atggaaagtt cggcgaccgt atttagctct cccagcagca ggtagatatg
    13021 attcactggc gagcgcacat agcagtaact gacgccaatc tgcggttgca tcggcatgcc
    13081 atcccaaaag aaacgaaatt gcttgagatg gctatccagt gcggtaatgc gctcctggtg
    13141 cgattctgta ttcagtcgca gcgcgagatc gttacccgaa agctgataaa catcttcacc
    13201 cggttccagc aagggtgaca gccagtgaga aagtttttgc ttgtattgaa tccgcagcat
    13261 gatgccatag ttcttaacca gcatttccat gccagggatg cgtaaataac aaagcgcaga
    13321 ccagggggca tcacgcaacg cgcaattcag ggcgcgaaca tttggcagat gaaccaccgg
    13381 gtccacatac gcaagccgct gaatgcgtct gactaccgct ctctgacggg ttgccagtac
    13441 agccatataa ttgacaataa aagagaatac cagataactg gaggaggtta tggtcagctg
    13501 cgtggtatag ctaggataaa tgggaatgta attttgatag ctgtggatgc tgatcatcaa
    13561 cacgaccgcc cagagcagag aaatcagctt ataaccatag cgcatcgctc cccacatcat
    13621 caggggcagc aataatgata aggtataatt ggtgctaaaa attgtgcttt tttcatttaa
    13681 cggcatgcat aacagcaaca ataaagcacc taatgccagt agccagagcg cgaactcttt
    13741 tttggtgact ttggcatcaa cctgctgttt taattgcgaa taatagctac gtaaataaaa
    13801 tggatttcgc actacccgaa tgatgaagta gcacagcggg acaccgatca gattacccac
    13861 cagtaaggcc tgataattga ttaaagtccc gaggttaaaa ggcatgacac cgaccagatt
    13921 ttctctgctc gccagtaatc ctacaaatgc agcaaactgg aaaagtatca gaaacagcgt
    13981 tgcaggaaac acaatctgcc agaatatacg ctgggaaatt aaacgggtat caccatgtga
    14041 aacgttgtta cgccggggag taaagaccct gtaaccgccc caacagagaa tgataatgat
    14101 aataaaatta gccgttaatg atagcgtttc gtaaaaaccc agctctgcat atttgcggac
    14161 aaaaatccct aaggcgatcc ctggcaatgc cgcccagctg aaaaacatca tcatgctgat
    14221 catcagtgcc agaggcagat aaaagagaaa aacctcaccg gaagaaatat gcgcgaaagt
    14281 attaatgtgg gcgaaaatgg gcaagattaa aaaaggcagg aatagcggaa gcccccacca
    14341 tttatcacgt atttttatat aagttgcatt cagtttcata gatgctca
//
LOCUS       DADMHM010000097        14073 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.098, whole genome shotgun sequence.
ACCESSION   DADMHM010000097 DADMHM010000000
VERSION     DADMHM010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 14073)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14073)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14073
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.098"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..2042)
                     /locus_tag="JN125_002482"
     CDS             complement(<1..2042)
                     /locus_tag="JN125_002482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001591423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HAY8872237.1"
                     /translation="MSQLDDTILDALTHVTFPKGFAQAEPAWVVTVDGVNYPLWQTDA
                     LVVGSGAARLRAAVELKRRQQNVLIATAGLYMGTSACSGSDKQTLFTAATAGNGDNFT
                     KLAEALASGGAMDHDTAYVEAVGSLHTLGGLQYLGLELPEDRYGAILRYQTDHDEAGR
                     ATSCGPRTSRLMVKVLLEEVQRLAIPVLTSATVIKLLHQRDENGEDRVAGAILATGHR
                     AHNPWGLAIVTAPNVVLATGGPGELYRDSVYPHKCFGSLGLALEEGLTLTNLTESQFG
                     IGTPRSTFPWNLSGTYVQVIPYIYSVDAEGNEYNFLADYYRTTQELASNIFRKGYQWP
                     FHATRVMDFGSSLLDMAVAQEQQSGRQVFMDFNRNPEAVPGDLPFSLDRLDDDVRAYL
                     ENNDALAPSPIERLQRMNPLSISLYKMHGYDLTTQPLQFAMNNQHMNGCIEVDIWGQT
                     SLPGCFAVGEVAGTHGVTRPGGAALNAGQVFAVRLARFIGCTQKRSVEGDVAQLVASS
                     LNIVREVIAQALANENGMALVTVKDKIQARMSDYAGFICHADKVRHATRDALLLSEFV
                     QQHGLTINHAGEIAELFMWRHMTLTSAAVLTQLTHYIDAGGGSRGARMVIDPQGKCLP
                     QTRRGAKEEWRFRSERAEDKNHRLTIQYSQGSFITEVKSLRMQPCINGIYFEKNWP"
     gene            complement(2039..3580)
                     /locus_tag="JN125_002483"
     CDS             complement(2039..3580)
                     /locus_tag="JN125_002483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001226973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl CoA:acetate/3-ketoacid CoA transferase"
                     /protein_id="HAY8872238.1"
                     /translation="MRKITTAEALAAQIQDGATIAISGNGGGMVEADHILAAIEARFL
                     QTGHPRDLTLIHSLGIGDRDCKGTNRFAHAEMLKRIIAGHFTWSPKMQALVKNNTIEA
                     YCFPGGVIQALLREIGSGRPGLFTHVGLGSFVDPRNGGGKSNECTTDDLVELIEIDGE
                     TKLRYRPFKVDYAILRGTYADPRGNVSLEEEAIDMDSYSMALAAHNSGGKVFVQVRDV
                     LEAGAIEPRRVKLPGILVDGIVEHRKQPQTYLGGYDLTISGQHRRLSSNDAIELVSHP
                     VRRLIARRAARELVAGASTNFGFGIPGGVPGVALREGVPYQSLWLSVEQGVHNGMMLD
                     DAFFGCARNADAIIPSLDQFEFYSGGGIDITFLGMGEMDQYGNVNVSHLNGNLIGPGG
                     FLEIAQNARKVVFCGTFDAKGSKIDITPDGLHIAQSGQIPKLVTKVEKITFSAAYAQQ
                     SGQEVLYITERAVFQLTAEGVELIEIAPGVEIERDILPYMAFRPIIKHPRLMESSLFT
                     PMEDA"
     gene            complement(3590..4366)
                     /locus_tag="JN125_002484"
     CDS             complement(3590..4366)
                     /locus_tag="JN125_002484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001283531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase/isomerase family protein"
                     /protein_id="HAY8872239.1"
                     /translation="MSDQPVLFSRVAASCRLTLNREDKCHAINEEVIESLDHYLNEIE
                     NDTTLRLVELTATGDKFFCAGGDIKSWSAYSPLDMGRKWIKRGNDVFNRLRNIPQLTV
                     ANLNGHTIGGGIELALCCDIRIARPGAKFSNPEVMLGMVPGWMGIERVLNQVGPVVGR
                     QMLMLGKRLTAQEAQAANLIDEVVEKEQVESWMANQLAQLEKCGPVALAHIKQLILAL
                     ENKHADYPHQLLAGLMSATQDCQQATRAFAEKSSVSFHNQ"
     gene            complement(4376..5217)
                     /locus_tag="JN125_002485"
                     /pseudo
     CDS             complement(4376..5217)
                     /locus_tag="JN125_002485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001205218.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
     gene            complement(5227..6018)
                     /locus_tag="JN125_002486"
     CDS             complement(5227..6018)
                     /locus_tag="JN125_002486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709993.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-ketoacyl-ACP reductase"
                     /protein_id="HAY8872240.1"
                     /translation="MKSTRPVAVITGAARGIGKGCAQELARGGFNLLINDRPDADSVE
                     KLHITQQECLAEGVEVICFPADVGDLSLHEEMLDAAQNQWGRLECLLNNAGISVKKRG
                     DLLDLEPDSFDQNIAINTRAPFFLAQAFSKRLLAQPKPEAELPHRSIIFVSSINAIML
                     AMNRGEYTIAKTAVSAAARLFAARLCNEQIGVYEVRPGLIKTDMTIPATAYYDELIAK
                     GLVPWGRWGYPADIASTVRAMAEGKLIYTCGQAVAIDGGLSMPRF"
     gene            6230..6877
                     /locus_tag="JN125_002487"
     CDS             6230..6877
                     /locus_tag="JN125_002487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709992.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HAY8872241.1"
                     /translation="MYLDTSNVQSLKEKLLLCAVNEFAEYGYEGARVDNIVKAAGCSK
                     QTVYHHFGNKENLFIEVLEYTWNDIRQKEKALDFSDLLPQKAIEKIIDFTWDYYIANP
                     WFLKIVHSENQSKGVHYAKSQRLLEINHAHLQLMESLLDEGKKHNIFKPDIDPLQVNI
                     NIAALGGYYLINQHTLGLVYHISMVSPQALEARRKVIKETILSWLLVDPSSTAHE"
     gene            complement(6861..7499)
                     /gene="ytfB"
                     /locus_tag="JN125_002488"
     CDS             complement(6861..7499)
                     /gene="ytfB"
                     /locus_tag="JN125_002488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein YtfB"
                     /protein_id="HAY8872242.1"
                     /translation="MPGRFELKPTLEKVWHAPDNFRFMDPLPPMHRRGIIIAAIVLVV
                     GFLLPSDDTPNAPVVTREAQLDIQSQSQPPTEEQLRAQLVTPQNDPDQVAPVAPEPIQ
                     EGQPEEQPQTTQTQPFQPDSGIDNQWRSYRVEPGKTMAQLFHDHGLPATDVYAMAQVE
                     GAGKPLSNLQNGQMVKIRQNASGVVTGLTIDTGNNQQVLFTRQPDGSFIRAR"
     gene            7718..8338
                     /locus_tag="JN125_002489"
     CDS             7718..8338
                     /locus_tag="JN125_002489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313212.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HAY8872243.1"
                     /translation="MTTPTFDTIEAQASYGIGLQVGQQLSESGLEGLLPEALVAGIAD
                     ALEGKHPAVPVDVVHRALREIHERADAVRRQRFQAMAAEGVKYLEENAKKEGVNSTES
                     GLQFRVINQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVNGVIPGWIE
                     ALTLMPVGSKWELTIPQELAYGERGAGASIPPFSTLVFEVELLEIL"
     gene            8647..10059
                     /gene="cycA"
                     /locus_tag="JN125_002490"
                     /gene_synonym="dagA"
     CDS             8647..10059
                     /gene="cycA"
                     /locus_tag="JN125_002490"
                     /gene_synonym="dagA"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-serine/D-alanine/glycine transporter"
                     /protein_id="HAY8872244.1"
                     /translation="MVDQVKVVADDQAPAEQSLRRNLTNRHIQLIAIGGAIGTGLFMG
                     SGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPWAGYF
                     TGWTYWFCWVVTGMADVVAITAYAQFWFPDLSDWVASLAVIVLLLTLNLATVKMFGEM
                     EFWFAMIKIVAIVSLIVVGLVMVAMHFQSPTGVEASFAHLWNDGGWFPKGLSGFFAGF
                     QIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSV
                     VPEKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKA
                     FAKLSKRAVPAKGLTFSCICLLGGVVMQYVNPSVIGAFTMITTVSAILFMFVWTIILC
                     SYLVYRKQRPHLHEKSIYKMPLGKLMCWVCMAFFVFVVVLLTLEDDTRQALLVTPLWF
                     IALGLGWLFIGKKRAAELRK"
     gene            complement(10104..10766)
                     /gene="ytfE"
                     /locus_tag="JN125_002491"
     CDS             complement(10104..10766)
                     /gene="ytfE"
                     /locus_tag="JN125_002491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster repair protein YtfE"
                     /protein_id="HAY8872245.1"
                     /translation="MAYRDQPLGELALSIPRASALFRKYDMDYCCGGKQTLARAAARK
                     ELDVEVIEAELAKLAEQPIEKDWRSAPLAEIIDHIIVRYHDRHREQLPELILQATKVE
                     RVHADKPSVPKGLTKYLTMLHEELSSHMMKEEQILFPMIKQGMGSQAMGPISVMESEH
                     DEAGELLEVIKHTTNNVTPPPEACTTWKAMYNGINELIDDLMDHISLENNVLFPRALA
                     GE"
     gene            complement(10874..11839)
                     /locus_tag="JN125_002492"
     CDS             complement(10874..11839)
                     /locus_tag="JN125_002492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418631.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HAY8872246.1"
                     /translation="MISGVLYALLAGLMWGLIFVGPLIVPEYPAMLQSMGRYLALGLI
                     ALPIAWLGRVRLRQLARRDWLTALMLTMMGNLIYYFCLASAIQRTGAPVSTMIIGTLP
                     VVIPVFANLLYSQRDGKLVWGKLAPALVCIGIGLACVNIAELNHGLPDFDWARYTSGI
                     VLALVSVVCWAWYALRNARWLRENPDKHPMMWATAQALVTLPVSLIGYLVACYWLNTQ
                     TPDFSLPFGPRPLVFISLMVAIAVLCSWVGALCWNVASQRLPTVILGPLIVFETLAGL
                     LYTFLIRQQMPPLMTLSGIALLVVGVVIAVRAKPEKPLTESVSES"
     gene            complement(11947..12807)
                     /gene="qorB"
                     /locus_tag="JN125_002493"
     CDS             complement(11947..12807)
                     /gene="qorB"
                     /locus_tag="JN125_002493"
                     /EC_number="1.6.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H:quinone oxidoreductase"
                     /protein_id="HAY8872247.1"
                     /translation="MIAITGATGQLGHYIIESLMKTVPASQIVAIVRNPAKAQALAAQ
                     GITVRQADYGDEAALTSALQGVEKLLLISSSEVGQRAPQHRNVINAAKAAGVRFIAYT
                     SLLHADTSPLGLADEHIETEKMLADSGIVYTLLRNGWYSENYLASAPAALEHGVFIGA
                     AGDGKIASATRADYAAAAARVISEAGHEGKVYELAGDSAWTLTQLATELTKQSGKQVT
                     YQNLSEADFAAALKSVGLPDGLADMLADSDVGASKGGLFDNSKTLSKLIGRPTTTLAE
                     SVSHLFNVNN"
     gene            12896..13276
                     /locus_tag="JN125_002494"
     CDS             12896..13276
                     /locus_tag="JN125_002494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418633.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HAY8872248.1"
                     /translation="MSQVSLSQQLKEGNLFAEQCPSREVLKHVTSRWGVLILVALREG
                     THRFSDLRRKIGGVSEKMLAQSLQALEQDGFLNRIAYPVVPPHVEYSLTPLGEQVSEK
                     VAALADWIELNLPEVLAVRDERAA"
     gene            complement(13405..>14073)
                     /gene="cpdB"
                     /locus_tag="JN125_002495"
     CDS             complement(13405..>14073)
                     /gene="cpdB"
                     /locus_tag="JN125_002495"
                     /EC_number="3.1.3.6"
                     /EC_number="3.1.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418634.1"
                     /note="periplasmic enzyme; functions during ribonucleic
                     acid degradation; 2',3'-cyclic nucleotides are first
                     converted to 3'-nucleotide and then cleaved to yield a
                     ribonucleotide and a phosphate; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2',3'-cyclic-nucleotide 2'-phosphodiesterase"
                     /protein_id="HAY8872249.1"
                     /translation="KGQLTFRNAADLYLYPNTLIVVKASGKEVKEWLECSAGQFNQID
                     PNSTKPQSLINWDGFRTYNFDVIDGVNYQIDVTQPARYDGECQMINANAERIKNLTFN
                     GKPIDPNAMFLVATNNYRAYGGKFAGTGDSHIAFASPDENRSVLAARIADESKRAGEI
                     HPAADNNWRLAPIAGDKKLDIRFETSPSDKAAAFIKEKGQYPMNKVATDDIGFAIYQV
                     DLSK"
BASE COUNT         3280 a         3651 c         3630 g         3512 t
ORIGIN      
        1 tctggccagt ttttttcaaa gtaaataccg ttaatacacg gttgcatacg taaagacttc
       61 acttcggtaa taaaagaacc ttgcgaatat tgaatcgtta atctgtgatt tttgtcttca
      121 gcacgttcag agcgaaaacg ccattcttct tttgcgccgc gacgagtttg tgggaggcat
      181 ttgccttgtg gatcaataac catccgtgct ccacgactgc ctccacctgc gtcaatataa
      241 tgcgtcaatt gcgttaatac ggcggcagaa gtcagcgtca tatgccgcca cataaacagt
      301 tcggcaattt cgcctgcgtg attgatggtt aaaccgtgtt gttgtacaaa ctcacttagc
      361 agcagggcgt cacgggtggc atgacgaact ttatcggcat gacaaataaa tccggcgtaa
      421 tcagacattc gcgcctggat tttgtctttc accgttacca gcgccattcc gttctcgttt
      481 gccagtgcct gagcgataac ttctctgact atattcagag atgaggctac cagctgcgcg
      541 acatcaccct caacagaccg cttttgcgtg caaccaataa aacgtgccag acgaacagca
      601 aaaacctgcc cggcattcaa tgctgcacca cctgggcgag tgacgccgtg tgtgccagca
      661 acttccccca cggcgaaaca gccgggcagg gaggtttgtc cccagatatc cacttcaatg
      721 cagccattca tatgctgatt attcatggca aactgcaaag gctgtgtggt gagatcgtaa
      781 ccgtgcatct tatacagcga gatagacagc ggattcattc gttgcagccg ttcgatgggc
      841 gatggtgcca gagcgtcgtt attttccaga tacgcgcgaa cgtcgtcgtc cagtcgatct
      901 aatgagaacg gcaggtcacc cggcaccgct tcaggattgc gattgaaatc cataaatacc
      961 tgacgccctg attgctgctc ttgcgctact gccatatcta acaagctgga gccaaaatcc
     1021 atcacccgag tggcgtggaa cggccactga tagcctttac ggaaaatgtt tgaagccagc
     1081 tcctgggtgg tgcgatagta atccgcgagg aagttatact cgttaccctc agcatccacg
     1141 gaatagatat acgggatcac ctgtacatag gtgccggata aattccacgg aaacgtgcta
     1201 cgcggcgtgc ctataccaaa ctggctttcg gtcagattgg ttagcgtcag accttcctcc
     1261 agcgccagcc ccagcgagcc gaagcattta tgtggataaa cactgtcgcg ataaagctcg
     1321 cccggtccgc ccgttgccag taccacattg ggcgcagtca caattgccag cccccatggg
     1381 ttatgggcgc gatgaccggt cgcgaggatt gcccctgcca cgcggtcttc gccgttttcg
     1441 tcacgctgat gcagcagttt aatcactgtt gcactggtca acactggaat ggcgaggcgc
     1501 tgtacttctt ccaacagcac tttcaccatt aaccttgagg tacgcggccc acacgaggtt
     1561 gcacgcccgg cttcgtcatg gtcggtttga taacgaagaa tcgcgccata gcgatcttcc
     1621 ggtaattcca gaccaagata ttgcaacccg cctagagtgt gcagagaacc taccgcttcg
     1681 acataagcgg tgtcgtgatc catcgcccca ccgctcgcca gtgcctctgc cagtttggtg
     1741 aagttgtcgc cgttgcccgc ggtagcggcg gtaaatagtg tctgtttatc ggaaccagaa
     1801 catgccgacg tccccatata taacccggcg gtagcgatca gcacattttg ctggcggcgt
     1861 ttaagttcaa ctgccgcacg taatcttgct gcaccactgc cgactaccag ggcatctgtt
     1921 tgccagagtg ggtaattaac accgtctacc gtgacaaccc atgcgggctc tgcctgtgca
     1981 aaaccctttg ggaaagtaac gtgcgtcagc gcatcaagga tggtgtcatc aagctgactc
     2041 atgcatcctc catcggcgta aacaggctac tttccatcag gcgtgggtgc ttgataattg
     2101 gacggaaagc catatacggc agaatgtcgc gctcaatctc cacacccggc gcgatttcaa
     2161 ttaattcaac gccttctgcc gttaactgga atactgcgcg ttcagtgata tacaacactt
     2221 cctgaccact ttgctgtgcg taggcggcgc taaaagtgat tttttccacc ttggtaacca
     2281 gtttagggat ttgacctgac tgggcgatat gcaagccatc tggtgttata tcgatcttgc
     2341 tgcctttagc gtcgaacgtg ccgcagaaca ccactttacg ggcattttgc gcaatttcga
     2401 gaaatccgcc ggggccaatc agattgccat tgagatggga gacgttgacg ttaccgtact
     2461 gatccatctc tcccatgccg aggaaggtga tatcgatccc tccgccactg tagaactcaa
     2521 attgatcgag tgatggaata atggcatcgg cgttgcgggc gcagccgaaa aacgcatcat
     2581 ccagcatcat gccgttatgt acgccttgct cgacgctcag ccataaactt tggtaaggaa
     2641 cgccttcgcg cagcgctact cctggaacgc cgccgggaat accaaagcca aagttggttg
     2701 aagcgccagc taccagttcg cgtgctgccc gacgggcaat caggcgacgt accggatgac
     2761 taaccagttc aatagcgtcg ttagaactca gacggcgatg ttggccgctg atggtcaggt
     2821 cgtaaccgcc aagataggtt tgtggctgtt tgcggtgttc aacgatgcca tcaaccagaa
     2881 tgcccggtaa tttgactcgg cgtggttcaa tcgcgccagc ttccagcaca tcgcgtacct
     2941 gtacgaacac tttgccgccg ctgttgtgtg ctgccagcgc catggaatag ctatccatat
     3001 caatcgcttc ttcttcaagg ctgacgttgc ctcgaggatc ggcataagtg ccacgcaaaa
     3061 tcgcgtaatc cactttgaaa gggcgataac gaagtttggt ttcaccgtcg atttcaatca
     3121 gttctaccag gtcgtcggta gtgcattcat tcgacttacc gccgccattg cgtggatcaa
     3181 caaacgatcc cagcccaacg tgggtaaaaa gccccggacg tccggagccg atctcccgta
     3241 gcagtgcctg aatcacgcca ccaggaaagc agtaggcttc aatcgtgtta ttttttacca
     3301 gcgcctgcat tttgggcgac caggtaaagt gcccggcaat aatgcgtttg agcatctctg
     3361 cgtgcgcaaa acggttagtg cctttgcagt cgcgatcgcc aatacccagc gagtggatta
     3421 gcgtcaggtc gcgagggtgt ccggtttgca ggaaacgcgc ttcaatagca gccagaatat
     3481 ggtcggcttc taccataccg ccgccgttac cgctaatagc aatagtcgca ccgtcctgaa
     3541 tttgcgccgc cagtgcctcg gcggttgtta tcttacgcat acaatttcct tattgattat
     3601 ggaagctcac gctacttttt tcggcaaagg cgcgcgtcgc ctgctggcaa tcctgagtgg
     3661 cggacattaa tccggccagt agctggtgcg ggtaatcggc atgtttattt tccagtgcca
     3721 gaatcagttg cttaatatgc gccagtgcca ccggaccgca tttttccagc tgcgctaact
     3781 ggttcgccat ccagctttcc acctgttctt tttctaccac ttcatcaatt aaattcgccg
     3841 cctgagcttc ctgcgccgtc aggcgtttac ccagcatcag catctggcga ccgaccaccg
     3901 gaccgacctg attaagcaca cgttcaatgc ccatccagcc aggcaccatg ccgagcatca
     3961 cttccgggtt agagaatttc gcgccggggc gggcaatacg aatatcgcag cacaaggcca
     4021 gttcaatacc accgccgatg gtatgaccgt tgagattcgc aacggttaat tggggtatgt
     4081 ttcgcaggcg attaaaaacg tcattaccgc gtttaatcca ttttctgccc atatctaatg
     4141 gcgaataggc cgaccacgat ttaatatcgc cgcccgcaca aaagaattta tcgccggttg
     4201 ccgttaattc gactaatcgt aatgtggtgt cgttttcaat ttcatttaaa taatggtcga
     4261 gagattcgat cacctcttcg ttaatagcat gacatttatc ttcacggttc aatgtcaggc
     4321 ggcaggaagc cgccactctg ctgaacagaa cgggttggtc actcatgatc attccttaac
     4381 aataatgcgc gatgcgatcg acgctaatat ccagcgtgct gttaatatct ttctgccacc
     4441 agtaaggcga gaatatttcc agttcaatag caccattaaa tccggcgttt tcaaccagcc
     4501 gacgaattga cggaatattg atgacgccat ctcccggcat accacggtca ttgaccagat
     4561 cagtggtcgg cactaaccag tcggaaacat gaaacgcgag gatgcgtttt ccggcacgca
     4621 ggatctgact ggcgagatcc ggatcccacc agacgtgata aacatccacc gccacgccga
     4681 ggccaaactc accatcggga tcgagttcat cacaccagtc cagcgcctga cgtaacgtgc
     4741 acaggcaaga gcgatcggca gctgtcatcg ggtgcagtgg ctccagcgca attggcacgc
     4801 cgacatcttt cgaatgtggc agcaactggc gaatcccttg tttcacttgt tctcgcgctt
     4861 catatagatc tttagtgccc gttggcagac cgccaaccac ctgcatataa caggcggcgt
     4921 taagcaccgc tgcgtcgtcc agcgcccggc ggttatcatc aatcgccagt ttgcgttccg
     4981 ccagtgtcgg cgcggtgtag taagtgctac ggcacaaacc ggaaacgctc atgttactgg
     5041 cggcaagctg gcgggtgatt tgctggagat cttcaccctg caactccctg cgccaggggc
     5101 aattgcgcca ataccgcgtg cggcgcaggc atcaataatg gcgggtagcg gcgttttata
     5161 gcccagtgtc gcggtattga tactgaataa atccgggcgt tgtaacagat ctctcatgat
     5221 tcagcctcag aagcgcggca tacttaagcc gccgtcgatg gcgaccgcct gaccacaggt
     5281 gtaaatcagt ttaccttccg ccattgcgcg gacggtggaa gcaatatcag ccggataacc
     5341 ccaacgtccc cacggcacca gacctttggc aatcagttcg tcgtaataag ccgttgccgg
     5401 aatagtcata tcagttttga tgagaccagg gcgcacttca taaacgccaa tttgttcatt
     5461 acaaaggcga gcagcaaaca gacgagcagc ggcagaaacg gcggttttgg caatggtgta
     5521 ttcgccgcga ttcatcgcca gcatgatggc gttgatggaa ctgacgaaaa taatcgagcg
     5581 gtgcggcagc tccgcttccg gtttcggctg tgccagtaag cgcttactga atgcctgagc
     5641 aaggaagaac ggcgcgcggg tgttaatggc aatgttttga tcgaagctgt ctggttcgag
     5701 gtcgaggagg tcaccgcgtt ttttcactga aatccccgcg ttattgagca gacactccag
     5761 ccgcccccac tggttttgcg ccgcgtcgag catctcctca tgcagagata gatcaccgac
     5821 atcagcaggg aagcaaatca cttccacgcc ttccgccaaa cattcttgtt gtgtgatatg
     5881 cagtttttct acgctgtcgg catcgggacg atcgttaatc agcaggttaa acccgccacg
     5941 agcaagctcc tgcgcacagc cctttccaat accgcgagcg gctccggtaa tcacggcaac
     6001 aggacgagtg gatttcatac aatagctctc ttttttgaat tttgtttcct tggtgatgat
     6061 tagcttgcga ctggaggata aaaagatcaa ccatctagtt ggttgatatg cgatgacgat
     6121 cacaggacat ttgataacct gatgaaagta caagtttttg cccttttttc tgaagctgaa
     6181 atcaaatcag gttatgatag tcaccacgaa gaggtcgtgg ggaagcgtta tgtatcttga
     6241 taccagcaac gtacagagcc tgaaggaaaa gctgctgtta tgcgcggtta atgaatttgc
     6301 cgaatatggt tatgaagggg ccagggtcga taatattgtt aaggctgcgg ggtgtagtaa
     6361 acagacggtt tatcatcact ttggtaataa agaaaattta tttattgaag tactggaata
     6421 tacctggaac gatattcgac aaaaagaaaa ggcccttgat ttctcagatc ttctgccaca
     6481 aaaggctatt gagaaaatta ttgattttac atgggattat tatattgcta acccctggtt
     6541 tttaaaaatt gtgcatagtg aaaatcaaag taaaggtgtg cattatgcaa aatcacagcg
     6601 tctcttagaa attaaccatg cgcacttgca gttaatggaa tccttattgg atgaagggaa
     6661 gaaacacaat atttttaagc cagatatcga cccattgcag gtgaatatta atattgctgc
     6721 gcttggcgga tattatttga tcaaccagca tacgcttggc ctggtttatc atatcagtat
     6781 ggtttccccc caggcactgg aagccagacg taaggtcatc aaagagacaa tccttagctg
     6841 gcttttggtt gacccttcat ctaccgcgca cgaataaaac tgccatccgg ctggcgggtg
     6901 aacaggacct gttgattatt ccccgtatca atggttaagc ccgtcaccac gccgctggcg
     6961 ttctggcgga ttttcaccat ctgcccgttt tgcaaattac tcagcggctt acccgcgcct
     7021 tctacctgcg ccattgcata gacatcggta gcgggcagtc cgtggtcgtg gaacagctgc
     7081 gccatcgttt taccgggttc gacacggtaa gagcgccatt gattatcaat tccgctatct
     7141 ggctggaatg gttgcgtttg ggtagtttgc ggctgctctt ctggctggcc ttcctgtata
     7201 ggttctggag cgaccggagc cacctgatca ggatcatttt gtggtgtgac taattgcgcc
     7261 cgcagctgtt cttctgtcgg cggttgtgat tgcgactgaa tatctaactg cgcttcacgc
     7321 gtcacgaccg gcgcgttggg cgtatcatca gatggaagca gaaatccgac caccaataca
     7381 atggcggcaa taatgatccc ccgacgatgc atcggcggca gcgggtccat gaagcgaaaa
     7441 ttgtccggcg cgtgccagac tttctccagg gttggtttta gttcaaagcg cccgggcatg
     7501 gtttcctcct gctccgcgtc ttgttcctca atcatagcct atgaataagc taacgctatg
     7561 atgtccgtgg taaacccgcc tttattatat tcatacggga tattgctatt gtttcttttt
     7621 ccccgggatt tgtcatcatt cctgcgacaa agttttaccc aaagaagtgt ggctgatatg
     7681 ctgcccgcta cttttatacc ctaagaaagg aaatacgatg accaccccaa cttttgacac
     7741 catcgaagcg caagcaagct acggcattgg tttgcaggta gggcaacaac tgagtgaatc
     7801 tggcctggaa gggctgctgc cagaagcact ggttgcaggt attgccgatg cgctggaagg
     7861 caaacatccg gctgttccgg ttgatgtggt gcatcgcgcg ctgcgtgaaa tccacgaacg
     7921 cgccgatgcc gttcgtcgtc agcgtttcca ggcgatggct gctgaaggtg tgaaatacct
     7981 ggaagaaaac gccaaaaaag aaggtgtgaa tagcaccgaa tctggcctgc aattccgcgt
     8041 gatcaaccag ggtgaaggcg caattccggc acgtaccgac cgcgttcgtg ttcattacac
     8101 cggtaaactg atcgacggca ccgtgtttga cagctccgtt gctcgtggtg aacccgctga
     8161 attcccggtt aacggcgtga tccctggctg gattgaagca ctgactctga tgccggtagg
     8221 ttctaaatgg gaactgacta tcccgcagga actggcatat ggcgagcgcg gcgcaggtgc
     8281 atccatccct ccgttcagca ccctggtgtt tgaagtcgaa ctgctggaaa tcctctaagc
     8341 agcgcattct gttcccctcg aaccagaggg gagcaggcat tcagcaataa acccttcagt
     8401 ttgccaaacg gcgctatttt gtgttgcaaa gaccccgtaa gcgtgtattt ttgtgagctg
     8461 tttcgcgtta tcaccgtgat atgacactca ctttaaacat aaaattaaca ttagatctaa
     8521 atcttagtat tcatcccgcg tattgttacc taatatcgat gagtcccgat acagattcgt
     8581 cgtatcatag actgactaaa ggccgtagag cctgaacaac acagacaggt acaggaagaa
     8641 aaaaacatgg tagatcaggt aaaagtcgtt gccgatgatc aggctccggc tgaacagtcg
     8701 ctacggcgca atctcacaaa ccgacatatt cagcttattg ccattggcgg tgccattggt
     8761 acggggttgt ttatggggtc tggcaaaacg attagccttg ccgggccgtc gatcattttc
     8821 gtttatatga tcattggttt tatgctcttt ttcgtgatgc gggcaatggg ggaattgctg
     8881 ctttcgaatc tggaatacaa atcttttagt gacttcgctt ccgatttact cgggccgtgg
     8941 gcaggatatt tcactggctg gacttactgg ttctgctggg ttgtaaccgg tatggcagac
     9001 gtggtggcga tcacggctta tgctcagttc tggttccccg atctctccga ctgggtcgcc
     9061 tcgctggcgg tgatagtgct gctgctgacg ctcaaccttg ccaccgtgaa aatgttcggt
     9121 gagatggagt tctggtttgc gatgatcaaa atcgtcgcca tcgtgtcgct gattgtcgtc
     9181 ggcctggtca tggtggcgat gcactttcag tcaccgactg gtgtggaagc gtcattcgcg
     9241 catttgtgga atgacggcgg ctggttcccg aaaggtttaa gtggcttctt tgccggattc
     9301 cagatagcgg ttttcgcttt cgtggggatt gagctggtag gtacaacagc tgcggaaacc
     9361 aaagatccgg agaaatcact gccacgcgcg attaactcca ttccgatccg tatcattatg
     9421 ttctacgtct tcgcgctgat tgtgattatg tccgtgacac cgtggagttc ggtagtcccg
     9481 gagaaaagcc cgttcgttga gctgtttgtg ttggtaggtt tgcctgcggc tgccagcgtg
     9541 atcaactttg tggtgctgac ctctgcggcg tcttccgcta acagcggcgt cttctctacc
     9601 agccgtatgc tgtttggtct ggcgcaggaa ggtgtggcac cgaaagcgtt cgctaaactt
     9661 tctaagcgcg cagtaccagc gaaagggctg accttctcct gcatctgcct gctcggtggc
     9721 gtggtgatgc agtatgtgaa tcctagcgtg attggtgcgt tcacgatgat tacaaccgtt
     9781 tccgcgattc tgtttatgtt cgtctggacg attatccttt gctcgtacct ggtgtaccgc
     9841 aaacagcgtc ctcatctgca tgagaagtcg atctacaaga tgccgctcgg caagctgatg
     9901 tgctgggtat gtatggcgtt ctttgtgttc gtggtcgtgt tgctgacact ggaagatgac
     9961 actcgccagg cgctgctggt taccccgctg tggtttatcg cactggggct gggctggttg
    10021 tttattggta agaagcgggc tgctgaactg cggaaataac cgcattatca tgctggatgg
    10081 cgcaatgcca tccagctttt agatcactca cccgccagcg cgcgtgggaa cagtacattg
    10141 ttttccagac tgatgtgatc catcaggtca tcaatcagtt cattaatgcc gttatacatc
    10201 gctttccagg tggtgcaggc ttctggcggc ggtgtgacgt tattggtagt gtgtttgatc
    10261 acttccagca gttcgcccgc ttcatcgtgc tcgctttcca ttacgctgat tggccccatt
    10321 gcctggctgc ccatgccttg tttgatcatc gggaagagga tctgctcttc tttcatcatg
    10381 tggctggaaa gctcttcatg cagcatggtc aggtattttg tcagcccttt tggcacgctc
    10441 ggtttgtcgg cgtgaacgcg ctcgacttta gtcgcttgca ggatcagctc cggcagttgc
    10501 tcgcggtgac gatcgtggta gcgcacgatg atatggtcaa tgatttctgc cagcggggcg
    10561 ctacgccagt ctttctcaat cggttgttca gcaagctttg ccagttcagc ttcaatgacc
    10621 tcaacatcca gttctttacg tgccgccgcg cgcgccagcg tctgcttacc gccacagcag
    10681 taatccatat catatttacg aaacagagct gaagcgcgag gaatagagag cgccagttca
    10741 cctaaaggtt ggtcgcgata agccatagct gatacctcat tcttaataag ataagatgta
    10801 ttttaaatac atctttaagg caaaagctat aacccttacg tagcagaggc ttatttaact
    10861 cacagccagt atgtcaactt tctgagacag attcagttaa aggcttttcc ggttttgctc
    10921 tgactgcaat gaccacgcca accactaaca gcgcgatacc gctcagcgtc atcagcggcg
    10981 gcatttgctg gcgtatcaaa aaggtgtaca gcaaacctgc cagtgtttcg aaaacgatca
    11041 gcggcccgag aatcactgtc ggtaatcgct ggctggcgac gttccagcag agtgcgccaa
    11101 cccatgagca aagcacggct atcgcaacca tcagactaat aaacaccagc ggacgggggc
    11161 caaaaggtag ggagaagtcc ggcgtttgcg tattcagcca gtaacaggcg acgagatagc
    11221 cgatgagaga aaccggcagt gtgaccagcg cctgcgccgt cgcccacatc atcggatgtt
    11281 tgtcgggatt ctcccgcagc cagcgggcgt tgcgcagggc ataccatgcc cagcagacca
    11341 cggaaactaa cgctagcacg atgcctgagg tataacgtgc ccagtcaaaa tcggggagtc
    11401 cgtggtttaa ctcagcaata ttcacacacg ccaggccgat gccaatacaa accagtgccg
    11461 gggcgagttt tccccacacg agtttgccgt cgcgctggct ataaagcaga ttggcaaaaa
    11521 cgggaatcac caccggcagg gtgccgataa tcatcgtgga aacaggcgca ccagtacgtt
    11581 gaatggcact ggcaaggcag aagtaataga tgaggttgcc catcattgtg agcatcaagg
    11641 cggtaagcca gtcgcgacgc gccaactgac gcagacgcac gcgtcccagc caggcaatgg
    11701 gcagcgcaat taaccctaac gccagataac gccccatcga ctgcaacatc gccgggtatt
    11761 ccggtacgat caacggcccg acaaaaataa gcccccacat caaccctgct aacagggcgt
    11821 acagcacgcc gctaatcatt actggcatcc attggtctgt cagaagaaag ttcaggaagc
    11881 agacatgatt gctcccggca tcccgtcatt attagagagg atgcgggagg atgccacttt
    11941 aattaactag ttattaacat taaaaagatg gcttacgctt tcggctaacg ttgtcgttgg
    12001 gcggccaatc aatttgctaa gcgttttgct gttatcaaac agaccacctt tcgatgcgcc
    12061 aacgtcagaa tccgccagca tatccgccag tccgtcgggc agtccgacgc ttttcagtgc
    12121 cgcggcgaaa tcggcttcgc tcagattttg ataggtaacc tgtttgccgc tctgtttggt
    12181 cagctctgtc gctaactgtg tcaacgtcca ggcactatcg cccgccagtt cgtaaacctt
    12241 gccttcgtga ccggcttcgc taatcacgcg tgccgcagct gccgcataat ctgcccgcgt
    12301 tgctgaggcg attttgccat cgcccgccgc accgataaat acgccgtgtt ccagtgctgc
    12361 cggggcgctg gcgaggtagt tttcgctgta ccagccgttg cgcagcaggg tgtaaacgat
    12421 gccagaatca gccaacattt tctccgtctc aatgtgctca tcggcgaggc cgagcgggga
    12481 ggtatctgca tgtagcaggc tggtataagc gataaatctc acgccagccg cctttgcggc
    12541 attaataaca ttacgatgct gcggggcacg ttgacccact tcgctggaag agatcagcag
    12601 tagtttttcc actccctgaa gtgcagatgt cagtgcggct tcatcgccgt agtcagcctg
    12661 acgcacggta atgccttgtg ctgccagagc ctgggctttt gccggattac gaacgatagc
    12721 cactatttgg ctggcaggaa ccgttttcat caaggattca ataatatagt gaccaagttg
    12781 gccagtggca ccagtaatag cgatcatggg aagtctccat cgttttgtct tgtgtttaaa
    12841 tacgctaaca cctaaactta cttttagtaa gtacgtacaa aaaggtaagt atgaaatgag
    12901 tcaggttagc ctgtcgcaac aactgaaaga gggtaatctc tttgcggaac agtgcccgtc
    12961 gcgcgaggtg ttgaaacacg tcaccagccg ttggggggtg ttgattctgg tggcgctacg
    13021 cgaaggtact catcgcttta gcgacctgcg gcgcaaaatc ggcggggtga gcgaaaagat
    13081 gcttgcgcag tcgttacagg cgttagaaca ggatggtttt cttaaccgta tcgcgtatcc
    13141 ggtggtgcca ccgcatgtgg aatatagcct cacgccgctg ggcgagcagg tgagcgaaaa
    13201 ggttgctgca ctggcggact ggattgagtt gaatttgccc gaggtgttgg cggtgcggga
    13261 tgaacgtgcg gcataactgc cggatgcgct gagcttatct ggtctacggt gcatggcttg
    13321 tagggcggat aagatgcgcc agcatcgcat ccgccaataa atgccggatg cggttgataa
    13381 tttatagacc gaaaaagaag tgttttactt actcaaatcc acctgataaa tcgcaaaccc
    13441 gatatcatcg gtcgcgactt tattcatcgg atattgccct ttctctttaa taaacgctgc
    13501 ggctttatct gacggggaag tttcgaaacg gatatccagt ttcttatcgc cagctatcgg
    13561 tgctaaacgc cagttgttat ctgccgccgg gtgaatttct cccgcacgtt tcgactcatc
    13621 agcaatcctc gctgccagca ccgagcgatt ctcatccggt gaagcaaaag cgatatggct
    13681 gtcgcccgta ccggcaaatt tgccgccgta agcgcgatag ttattggtgg caacgaggaa
    13741 catagcgttc ggatcaatcg gcttgccatt aaaggtcagg ttcttaatcc gctctgcatt
    13801 ggcattaatc atctggcact cgccgtcata gcgggcgggt tgggtaacat caatctgata
    13861 attcacacca tcaataacat caaagttata agtgcggaaa ccatcccagt tgatgagtga
    13921 ctgtggtttc gtgctgttag gatcaatctg gttaaactgt ccggcggagc actccagcca
    13981 ctctttcacc tctttaccgc tggctttcac tacaatcagc gtattggggt agagataaag
    14041 atcggcggca ttacggaagg tcaactggcc ttt
//
LOCUS       DADMHM010000098        13964 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.099, whole genome shotgun sequence.
ACCESSION   DADMHM010000098 DADMHM010000000
VERSION     DADMHM010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13964)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13964)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13964
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.099"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            438..2069
                     /gene="oppA"
                     /locus_tag="JN125_002496"
     CDS             438..2069
                     /gene="oppA"
                     /locus_tag="JN125_002496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707150.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter substrate-binding
                     protein OppA"
                     /protein_id="HAY8872250.1"
                     /translation="MTNITKRSLVAAGVLAALMAGNVALAADVPAGVTLAEKQTLVRN
                     NGSEVQSLDPHKIEGVPESNISRDLFEGLLVSDLDGHPAPGVAESWDNKDAKVWIFHL
                     RKDAKWSDGTPVTAQDFVYSWQRSVDPNTASPYASYLQYGHIAGIDEILEGKKTITDL
                     GVKAIDDHTLEVTLSEPVPYFYKLLVHPSTSPVPKAAIEKFGEKWTQPGNIVTNGAYT
                     LKDWVVNERIVLERSPTYWNNAKTVINQVTYLPIASEVTDVNRYRSGEIDMTYNNMPI
                     ELFQKLKKEIPDEVHVDPYLCTYYYEINNQKPPFNDVRVRTALKLGMDRDIIVNKVKA
                     QGDMPAYGYTPPYTDGAKLTQPEWFGWSQEKRNEEAKKLLAEAGYTADKPLTINLLYN
                     TSDLHKKLAIAASSLWKKNIGVNVKLVNQEWKTFLDTRHQGTFDVARAGWCADYNEPT
                     SFLNTMLSNSSMNTAHYKSPAFDSIMAETLKVTDEAQRTALYTKAEQQLDKDSAIVPV
                     YYYVNARLVKPWVGGYTGKDPLDNTYTRNMYIVKH"
     gene            2155..3075
                     /gene="oppB"
                     /locus_tag="JN125_002497"
     CDS             2155..3075
                     /gene="oppB"
                     /locus_tag="JN125_002497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppB"
                     /protein_id="HAY8872251.1"
                     /translation="MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPE
                     VMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFKYKDYSVNDLVASSFPVSAKLGA
                     AAFFLAVILGVSAGVIAALKQNTKWDYTVMGLAMTGIVIPSFVVAPLLVMIFAIILHW
                     LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRR
                     IILRHALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVL
                     SLTILVGALTILFNAIVDVLYAVIDPKIRY"
     gene            3090..3998
                     /gene="oppC"
                     /locus_tag="JN125_002498"
     CDS             3090..3998
                     /gene="oppC"
                     /locus_tag="JN125_002498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000979653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide ABC transporter permease OppC"
                     /protein_id="HAY8872252.1"
                     /translation="MMLSKKNSETLENFSEKLEVEGRSLWQDARRRFIHNRAAVASLM
                     VLVLIALFVILAPMLSQFAYDDTDWAMMSSAPDMESGHYFGTDSSGRDLLVRVAIGGR
                     ISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFF
                     GQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTSGIVIRHIVPNV
                     LGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPA
                     GFLVVTLFCFNFIGDGLRDALDPKDR"
     gene            4010..5023
                     /gene="oppD"
                     /locus_tag="JN125_002499"
     CDS             4010..5023
                     /gene="oppD"
                     /locus_tag="JN125_002499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide/oligopeptide ABC transporter
                     ATP binding protein OppD"
                     /protein_id="HAY8872253.1"
                     /translation="MSVIETATVPLAQQQADALLNVKDLRVTFSTPDGDVTAVNDLNF
                     SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEHELNKLR
                     AEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKNMSKAEAFEESVRMLDAVKMPEARK
                     RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREF
                     NTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPVHPYSIGLLNAVPRLD
                     AEGETMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICSSAPPLEEFTPGRLCACFKPVE
                     ELL"
     gene            5020..6024
                     /gene="oppF"
                     /locus_tag="JN125_002500"
     CDS             5020..6024
                     /gene="oppF"
                     /locus_tag="JN125_002500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide/oligopeptide ABC transporter
                     ATP binding protein OppF"
                     /protein_id="HAY8872254.1"
                     /translation="MNAVTEGRKVLLEIADLKVHFEIKDGKQWFWQPPKTLKAVDGVT
                     LRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGHVAWLGKELLGIKPDEWRAVRSD
                     IQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKMSRQEVRERVKAMMLKVGLLPNLINR
                     YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSL
                     IFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTRALMSAVPIPDPDLE
                     KNKTIQLLEGELPSPINPPSGCVFRTRCPIAGPECAKTRPVLEGSFRHAVSCLKVDPL
                     "
     gene            complement(6077..6406)
                     /locus_tag="JN125_002501"
     CDS             complement(6077..6406)
                     /locus_tag="JN125_002501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309775.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciU family protein"
                     /protein_id="HAY8872255.1"
                     /translation="MDMDLNNRLTEDETLEQAYDIFLELAADNLDPADVLLFNLQFEE
                     RGGAELFDPAEDWQEHVDFDLNPDFFAEVVIGLADSEDGEINDVFARILLCREKDHKL
                     CHIIWRE"
     gene            complement(6441..7901)
                     /gene="cls"
                     /locus_tag="JN125_002502"
     CDS             complement(6441..7901)
                     /gene="cls"
                     /locus_tag="JN125_002502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase"
                     /protein_id="HAY8872256.1"
                     /translation="MTTVYTLVSWLAILGYWLLIAGVTLRILMKRRAVPSAMAWLLII
                     YILPLVGIIAYLAVGELHLGKRRAERARAMWPSTAKWLNDLKACKHIFAEENSSVAAP
                     LFKLCERRQGIAGVKGNQLQLMTESDDVMQALIRDIQLARHNIEIVFYIWQPGGMADQ
                     VAESLMAAARRGIHCRLMLDSAGSVAFFRSPWPELMRNAGIEVVEALKVNLMRVFLRR
                     MDLRQHRKMIMIDNYIAYTGSMNMVDPRYFKQDAGVGQWIDLMARMEGPIATAMGIIY
                     SCDWEIETGKRILPPPPDVNIMPFEQASGHTIHTIASGPGFPEDLIHQALLTAAYSAR
                     EYLIMTTPYFVPSDDLLHAICTAAQRGVDVSIILPRKNDSMLVGWASRAFFTELLAAG
                     VKIYQFEGGLLHTKSVLVDGELSLVGTVNLDMRSLWLNFEITLAIDDKGFGADLAAVQ
                     DDYISRSRLLDARLWLKRPLWHRVAERLFYFFSPLL"
     gene            8044..8217
                     /locus_tag="JN125_002503"
     CDS             8044..8217
                     /locus_tag="JN125_002503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciY family protein"
                     /protein_id="HAY8872257.1"
                     /translation="MKRSRTEVGRWRMQRQASRRKSRWLEGQSRRNMRIHSIRKCILN
                     KQRNSLLFAIYNI"
     gene            complement(8272..9525)
                     /gene="kch"
                     /locus_tag="JN125_002504"
     CDS             complement(8272..9525)
                     /gene="kch"
                     /locus_tag="JN125_002504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="voltage-gated potassium channel protein"
                     /protein_id="HAY8872258.1"
                     /translation="MSHWATFKQTATNLWVTLRHDILALAVFLNGLLIFKTIYGMSVN
                     LLDIFHIKAFSELDLSLLANAPLFMLGVFLVLNSIGLLFRAKLAWAISIILLLIALIY
                     TLHFYPWLKFSIGFCIFTLVFLLILRKDFSHSSAAAGTIFAFISFTTLLFYSTYGALY
                     LSEGFNPRIESLMTAFYFSIETMSTVGYGDIVPVSESARLFTISVIISGITVFATSMT
                     SIFGPLIRGGFNKLVKGNNHTMHRKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP
                     EDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCQAILALSDNDADNAFVVLSAKD
                     MSSDVKTVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILARVLNGEEINNDMLVSMLL
                     NSGHGIFSDNDEQETKADSKESAQK"
     gene            complement(9825..10121)
                     /locus_tag="JN125_002505"
     CDS             complement(9825..10121)
                     /locus_tag="JN125_002505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009448315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YciI family protein"
                     /protein_id="HAY8872259.1"
                     /translation="MLYVIYAQDKADSLEKRLSVRPAHLARLQLLHDEGRLLTAGPMP
                     AVDSNDPGAAGFTGSTVIAEFESLEAAQAWADADPYVAAGVYEHVSVKPFKKVF"
     gene            10336..11064
                     /gene="tonB"
                     /locus_tag="JN125_002506"
     CDS             10336..11064
                     /gene="tonB"
                     /locus_tag="JN125_002506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707161.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein TonB"
                     /protein_id="HAY8872260.1"
                     /translation="MTSMTLDLPRRFPWPTLLSVCIHGAVVAGLLYTSVHQVIELPAP
                     AQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPK
                     PKPVKKVQEQPKRDIKPVESRPASPFENTAPARLISSTATAATSKPVTSVASGPRALS
                     RNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRY
                     EPGKPGSEIVVNILFKINGTTEIQ"
     gene            complement(11104..11502)
                     /gene="yciA"
                     /locus_tag="JN125_002507"
     CDS             complement(11104..11502)
                     /gene="yciA"
                     /locus_tag="JN125_002507"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioester hydrolase YciA"
                     /protein_id="HAY8872261.1"
                     /translation="MSTTHNVPQGDLVLRTLAMPADTNANGDIFGGWLMSQMDIGGAI
                     LAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVQKGTTSVSINIEVWVKKVASE
                     PIGQRYKATEALFKYVAVDPEGKPRALPVE"
     gene            complement(11607..12146)
                     /locus_tag="JN125_002508"
     CDS             complement(11607..12146)
                     /locus_tag="JN125_002508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation protein A"
                     /protein_id="HAY8872262.1"
                     /translation="MKQFLDFLPLVVFFAFYKIYDIYAATAALIVATAIVLIYSWVRF
                     RKVEKMALITFVLVVVFGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWVMKKPLIQ
                     RMLGKELTLPQPVWSKLNLAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLI
                     FTLLSGIYIYRHMPQEDKS"
     gene            complement(12176..12919)
                     /locus_tag="JN125_002509"
     CDS             complement(12176..12919)
                     /locus_tag="JN125_002509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0259 family protein"
                     /protein_id="HAY8872263.1"
                     /translation="MSITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVLGHVFSPS
                     DAQLAQLNDGVPVSGSSGLFDLVQNMSPEQQQILLQASAASTFSGLIGNAILAGGVIL
                     IIQLVSAGQRVSALRAIGASAPILPKLFILIFLTTLLVQIGIMLVVVPGIIMAILLAL
                     APVMLVQDKMGIFASMRSSMRLTWANMRLVAPAVLSWLLAKTLLLLFASSFAALTPEI
                     GAVLANTLSNLISAVLLIYLFRLYMLIRQ"
     gene            complement(12947..13036)
                     /locus_tag="JN125_002510"
                     /pseudo
     CDS             complement(12947..13036)
                     /locus_tag="JN125_002510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460692.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
     gene            13276..13914
                     /gene="ompW"
                     /locus_tag="JN125_002511"
     CDS             13276..13914
                     /gene="ompW"
                     /locus_tag="JN125_002511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein OmpW"
                     /protein_id="HAY8872264.1"
                     /translation="MKKLTVAALAVTTLLSGSAFAHEAGEFFMRAGSATVRPTEGAGG
                     TLGSLGGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPP
                     TLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVG
                     VDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRF"
BASE COUNT         3748 a         3281 c         3436 g         3499 t
ORIGIN      
        1 aaggtcatcg ggcattatct gaacataaaa cactatcagt aagttggagt cattacctgt
       61 taaggcatgg atgcaagcta tagattctga tacggtcaat aaaagagaat tgcttaacaa
      121 ttttgcaaaa tgtattggcg agtaagaacc gcatttggta ctttccgggc aaccgccaga
      181 cgattcttta ttggtaatga gaataattaa caattaaaga gcgtcgcgaa agaataatgt
      241 gtctcgatag gggagacaca gtacgaatcg acataaggtg atcgtctgaa tcaccagaat
      301 aaataaagtc ggtgatagca atccgtaacg ataaagtaac ctgacagcag aaagtctccg
      361 agcctgtgca gggtcccaat ccgggattac acatgctggt taataccagt aattataatg
      421 agggagtcca aaaaacaatg accaacatca ccaagagaag tttagtagca gctggcgttc
      481 tggctgcgct aatggcaggg aatgtcgcgc tggcagctga tgtacccgca ggcgtcacac
      541 tggcggaaaa acaaacgctg gtacgtaaca atggttcaga agttcagtca ttagatccgc
      601 acaaaattga aggtgttccg gagtctaata tcagccgaga cctgtttgaa ggcttactgg
      661 tcagcgatct tgacggtcat ccggcacctg gcgtcgctga atcctgggat aataaagacg
      721 cgaaagtctg gatcttccat ttgcgtaaag atgcgaaatg gtctgatggt acgccagtca
      781 cagcacaaga ctttgtgtat agctggcaac gttctgttga tccgaacact gcttctccgt
      841 atgccagtta tctgcaatat gggcatatcg ccggtattga tgaaattctt gaagggaaaa
      901 aaacgattac cgatctcggc gtgaaagcta ttgatgatca cacattagaa gtcaccttaa
      961 gtgaacccgt tccgtacttc tataaattac ttgttcaccc atcaacttca ccggtgccaa
     1021 aagccgctat cgagaaattc ggcgaaaaat ggacccagcc tggtaatatc gtcaccaacg
     1081 gtgcctatac cttaaaagat tgggtcgtaa acgaacgaat cgttcttgaa cgcagcccga
     1141 cctactggaa caacgcgaaa accgttatta accaggtaac ctatttgcct attgcttctg
     1201 aagttaccga tgtcaaccgc taccgtagtg gtgaaatcga catgacttat aacaacatgc
     1261 cgatcgaatt gttccagaag ctgaaaaaag agatcccgga cgaagttcac gttgatccat
     1321 acctgtgcac ttactattac gaaattaaca accagaaacc gccattcaac gatgtgcgtg
     1381 tgcgtaccgc actgaaacta ggtatggacc gcgatatcat tgttaataaa gtgaaagcgc
     1441 agggcgacat gcccgcctat ggttacactc caccgtatac tgatggcgca aaattgactc
     1501 agccggaatg gtttggctgg agccaggaaa aacgtaacga agaagcgaaa aaactgctgg
     1561 ctgaagcggg ttataccgca gacaaaccgt tgaccatcaa cctgttgtat aacacctccg
     1621 atctgcataa aaagctggcg attgctgcct cttcattgtg gaagaaaaac attggtgtaa
     1681 acgtcaaact ggttaaccag gagtggaaaa cgttcctcga cacccgtcac cagggtactt
     1741 ttgatgtggc ccgtgcaggc tggtgtgctg actacaacga accaacttcc ttcctgaaca
     1801 ccatgctttc gaacagctcg atgaataccg cgcattataa gagcccggcc tttgacagca
     1861 ttatggcgga aacgctgaaa gtgactgacg aggcgcagcg cacagctctg tacactaaag
     1921 cagaacaaca gctggataag gattcggcca ttgttcctgt ttattactac gtgaatgcgc
     1981 gtctggtgaa accgtgggtt ggtggctata ccggcaaaga tccgctggat aatacctata
     2041 cccggaatat gtacattgtg aagcactaat ggcaatacgt ggggcaggag tgtcctgctc
     2101 cacggtgtct gatttttatc gcattacaga aggcacaggc cagaaggtag ggcaatgtta
     2161 aaatttattc tacgtcgctg tctggaagcg attccgacgc tatttattct tattactatt
     2221 tcgttcttta tgatgcgcct cgcgccggga agccctttta ccggcgaacg tactttaccg
     2281 ccagaagtga tggccaatat cgaagcgaaa tatcatctta atgatccgat catgacacag
     2341 tatttcagct acctgaaaca actggcgcac ggtgatttcg gtccatcgtt taaatataaa
     2401 gattattcgg tcaatgactt ggttgcatcc agttttcccg tttctgccaa actgggagcc
     2461 gcagcatttt tccttgcggt aatactgggt gttagtgctg gcgttattgc cgcattaaaa
     2521 caaaacacca aatgggacta taccgtgatg gggctggcaa tgaccgggat tgttatcccc
     2581 agttttgtgg ttgcaccatt attagtcatg atatttgcga tcattttgca ttggctgccg
     2641 ggcggtggct ggaatggtgg ggcgcttaaa ttcatgatat tgccgatggt ggcgttgtca
     2701 ctcgcttata tcgccagtat tgcgcgtatt acccgtggct ctatgattga agtattacac
     2761 tccaatttta ttcgtactgc ccgggcgaaa gggttaccta tgcggcggat cattttacgt
     2821 cacgcattaa aacctgctct gttacccgtg ctctcttata tgggccccgc atttgtcggc
     2881 attattaccg gttctatggt tatcgaaacc atttatggtt tgccggggat tggacaactg
     2941 ttcgttaatg gcgcattgaa ccgtgactat tccttagtgt taagcctgac catcctggtt
     3001 ggtgctttaa ccattttgtt taatgccatt gtcgatgtgc tatatgcggt tatcgacccg
     3061 aaaatccgtt actgatactg gagctcgcga tgatgttaag taagaaaaac agcgagacgc
     3121 tggaaaattt cagtgaaaag ctggaggtcg aagggcgcag cttgtggcag gacgcacgtc
     3181 gacgttttat tcataaccgt gcggcggttg ccagtctgat ggtgctggtg ctgatcgcgt
     3241 tatttgtaat cctggcaccg atgctttccc agtttgccta tgacgatact gactgggcga
     3301 tgatgtccag cgccccggat atggagtccg gtcactactt tggtactgac tcatccggtc
     3361 gcgacctgct tgtgcgcgtt gcgattggtg ggcgtatctc actcatggtc ggtgttgctg
     3421 cggcactggt ggctgtggtc gtcgggacac tttatggttc gctttccggt tatctgggcg
     3481 gtaaagtgga ttcggtaatg atgcgtctgc tggaaatcct caactccttc ccattcatgt
     3541 tcttcgtcat tttgctggtg acctttttcg gtcaaaacat cctgctgatt ttcgtggcga
     3601 taggcatggt ttcctggctg gatatggctc gtattgtgcg tgggcaaacc ctgagtctga
     3661 agcgcaaaga gtttattgag gcggcacaag ttggcggtgt atcgacatcg ggcattgtta
     3721 ttcgccacat tgtgccgaat gtactcggtg tggtggtggt ctacgcatca cttctggtgc
     3781 ccagcatgat cctctttgaa tctttcctta gcttcctggg gttgggtacg caagagccgt
     3841 taagcagctg gggtgcattg ctgagtgatg gcgcgaactc gatggaagtc tctccatggt
     3901 tattgttgtt cccagcggga ttcctcgtgg tgacgctgtt ttgtttcaac tttatcggcg
     3961 atggcttgcg tgatgccctc gacccgaaag atcgttaagg agtgcagcca tgagcgtaat
     4021 tgaaactgca actgtgccgc tcgcacaaca acaggctgac gcactgctga acgtgaaaga
     4081 tttgcgtgtc acctttagta ccccggacgg cgacgtcacg gcggtcaatg atttgaattt
     4141 ttccctacgt gccggagaaa cgctgggtat tgtaggtgag tctggttcgg gtaaatcgca
     4201 aactgcattt gcgttgatgg gcctgttggc tgccaacgga cgtattggcg gatcggcaac
     4261 cttcaatggg cgtgaaatcc tcaatttgcc agagcatgaa ctcaataaac tgcgcgctga
     4321 acaaatctca atgatttttc aggacccaat gacttcgttg aatccctata tgcgcgtcgg
     4381 tgagcagttg atggaagtgc tgatgctgca taagaacatg agcaaagctg aggcgtttga
     4441 agagtcggtg cggatgctcg atgcggtaaa aatgccggaa gcacgtaaac gcatgaaaat
     4501 gtacccgcac gagttttctg gtggcatgcg tcagcgagtt atgattgcga tggcattgct
     4561 atgtcgacct aagctgctga ttgcggatga acccactaca gcgctggacg tcaccgtaca
     4621 ggcgcagatc atgacgctat taaatgaact gaaacgggaa tttaataccg ccatcattat
     4681 gattacccac gatcttggcg tggtggcggg gatctgtgac aaagtgctgg taatgtacgc
     4741 cgggcgcacg atggaatatg gcaacgcgcg cgatgtcttt tatcaacccg ttcatcctta
     4801 ttctatcggt ttgctcaacg cggtgccacg tctcgatgcg gaaggtgaaa caatgttgac
     4861 catcccgggt aatccgccaa acctgctgcg attaccgaaa ggttgcccgt tccagccacg
     4921 ttgtccgcat gcgatggaaa tttgtagtag cgcaccgccg ctggaagagt ttacgcctgg
     4981 ccgtctgtgt gcttgcttta aaccggtgga ggaactgtta tgaatgctgt aaccgaagga
     5041 agaaaagtcc tccttgaaat cgccgatctg aaagtgcact ttgaaatcaa agatggcaaa
     5101 cagtggttct ggcaaccgcc gaaaacgctc aaagccgtcg atggtgtcac gcttcgcctg
     5161 tatgaagggg aaacattagg tgtggtaggg gaatcgggat gcggtaagtc cacctttgct
     5221 cgcgccatca ttggcctggt taaagcgacc gacggtcatg ttgcctggtt aggtaaagag
     5281 ttgctgggca ttaagcccga tgaatggcgt gccgttcgca gtgatattca gatgattttc
     5341 caggatccat tggcatcgct aaacccgcgc atgaccatcg gcgagatcat cgctgaacca
     5401 ctgcgtactt atcatccgaa aatgtcacgt caggaagttc gcgagcgcgt gaaggcgatg
     5461 atgctgaaag tcgggttatt gcctaacctg attaaccgct atccgcatga gttctccggt
     5521 gggcagtgcc agcgtatcgg gattgctcgt gctcttattc ttgaaccgaa gctgattatc
     5581 tgtgatgagc cggtgtcggc gctggacgtg tcaattcagg cgcaggtggt caacctgctc
     5641 cagcagctgc aacgtgagat gggattgtca ttaattttta ttgctcatga cctggccgtg
     5701 gtaaaacaca tttccgatcg tgtgttggtg atgtatctcg gccatgcggt agaactgggg
     5761 acctatgatg aggtctacca caatccacta catccttaca ccagggcatt gatgtcggca
     5821 gtccccatac ctgatccgga tctggagaag aacaaaacta tccagttact ggaaggggaa
     5881 ttaccgtcgc cgatcaaccc gccttccggt tgtgttttcc gtacccgttg cccgattgcc
     5941 ggtccggagt gcgccaaaac acgtcctgtg ctggaaggga gtttcagaca cgccgtttct
     6001 tgcctgaaag tcgatccgct ttaaacacaa taagggctga cagttgtcag ccctttttca
     6061 cgccgaaagc gattatttat tcccgccaga tgatatggca aagtttgtga tctttttcgc
     6121 ggcataacag aatgcgggcg aaaacatcgt tgatttcacc atcctcactg tccgccagac
     6181 caatcaccac ttcggcaaaa aagtccgggt tcaaatcgaa atcaacatgt tcctgccagt
     6241 cttccgccgg atcgaataac tccgcgccgc cgcgctcttc aaactgaaga ttgaacagca
     6301 gaacatcagc tgggtcgaga ttgtcggcag ccagttcgag aaaaatatcg taggcctgct
     6361 caagcgtttc atcttcagtc aggcgattgt ttagatccat atccatagtc actacctgtt
     6421 taacctctgt tggagatgtt ttacagcaac gggctgaaga agtaaaacag tcgctcggcg
     6481 acacgatgcc ataatggacg ttttagccat aaacgggcat cgagcagacg tgaacgcgaa
     6541 atataatcgt cctgaacggc ggcaaggtct gcaccaaaac ctttatcgtc gattgccagg
     6601 gtaatctcga aattcagcca cagactacgc atatcaaggt taacggtgcc aaccagactt
     6661 agttcgccat cgaccagcac gctcttggta tgcagtaacc cgccttcaaa ctgataaatt
     6721 ttaaccccag cagcaagaag ttccgtaaag aatgcgcgac tggcccagcc gaccagcatc
     6781 gagtcatttt ttcgcggaag gataatactg acatccaccc cgcgctgtgc cgccgtgcaa
     6841 atcgcatgaa gtaaatcatc gcttggcaca aagtagggcg tggtcatgat caaatattca
     6901 cgcgccgaat aagccgcagt caataatgcc tggtgaatga gatcttccgg aaagccgggg
     6961 ccagaagcaa ttgtgtgaat ggtgtgaccg ctggcctgtt caaacggcat aatattgaca
     7021 tctggtggtg gcggcagaat acgttttccg gtttcaatct cccagtcgca ggaataaata
     7081 atccccatcg cggtggcgat ggggccttcc atacgcgcca tcagatcaat ccattgccct
     7141 acgcccgcat cttgtttgaa gtagcgagga tcgaccatat tcatgctgcc ggtgtacgcg
     7201 atgtaattat cgatcatgat catcttgcga tgttggcgca ggtccatacg gcgtaaaaac
     7261 acacgcatca gattgacctt taaggcttcg accacttcaa taccggcatt acgcattagc
     7321 tcgggccacg ggctgcggaa aaaagccaca ctcccggcgg agtcgagcat caatcggcaa
     7381 tgaatgccgc gtcgcgcagc ggccattaat gattcagcca cctggtccgc catgccgccg
     7441 ggctgccaga tataaaacac aatctcaata ttatggcgcg cgagctggat gtcgcggatt
     7501 aacgcctgca tcacatcatc tgactcggtc atcagttgta gctgattccc tttgacccca
     7561 gcgatcccct gacgacgctc gcaaagcttg aataatggcg cagcgacact gctattttct
     7621 tcggcgaaga tatgcttaca ggctttaagg tcgttaagcc attttgcggt ggaaggccac
     7681 atcgctctgg cgcgctcagc gcggcgtttg cctaaatgga gctcgccaac ggcaagatag
     7741 gcaataattc cgactaacgg cagaatgtaa ataatcaaca gccaggccat cgcggaggga
     7801 actgcgcgtc gtttcattag aatgcgtaaa gttacgcctg caatgagcaa ccagtatccc
     7861 agaatggcca accaactcac caacgtataa acggttgtca tagattagaa atccttttga
     7921 aagcgcattg ttatgagttt acgcatatgg attcatctgg caaataaaaa cgcgggaaaa
     7981 gcactggtca gcgtcggggg cgggggtata atgaccattc tgttattgca tagagtagtt
     8041 aacatgaagc ggagtagaac ggaagtgggg cgctggcgca tgcagcgtca ggctagccga
     8101 cgtaaatcgc gttggcttga ggggcaatcg cgccgaaata tgcgtatcca cagcatcagg
     8161 aagtgcattc taaacaaaca gcgtaactcg ttattgtttg cgatctacaa tatctaaatg
     8221 tactgggcac cattgcggtg cccaataagt ttactcctct atctttaaac tctatttttg
     8281 cgccgattct ttactgtcag ctttcgtttc ttgttcatcg ttatcgctga aaatgccatg
     8341 accggagttc aacaacattg aaacgagcat atcattatta atctcttcac catttaaaac
     8401 tcgcgccaga atttcgctgc caaacagttg cggtgagaga atgatatccg gatgtaccat
     8461 cttaatctta ttcaggtttt tgctatcact gacggcgaga actgttttga catcactgct
     8521 catatctttt gccgagagta caacaaacgc gttatctgca tcgttatcac tcagcgccag
     8581 aatggcctgg caacgatcga ttcccgcttt ctttaatact gaactgtcat tactgtcacc
     8641 ggggataaca tcagcgttat cgcctaagcg ttgctcaagt tgcttgatat catcttcagg
     8701 caagttgctg ataaccgtta cgttttgtcc gcgttgattc agttgcagaa tcgtattgat
     8761 ggcgagaatc gaatgtccgc aaacaataaa atgatcttta cgatgcattg tatgattgtt
     8821 tccttttaca agtttgttga atcccccgcg gataagcgga ccaaaaattg aggtcataga
     8881 tgtggcaaaa acggtaatac cggaaataat gaccgaaata gtgaacaatc gtgctgattc
     8941 agaaacaggg acaatatcgc catagccgac ggttgacatg gtttctatcg aaaaatagaa
     9001 cgcggtcatc aaactttcta ttcgcggatt aaaaccttcg cttaaataaa gcgcaccgta
     9061 ggttgagtaa aacagtaatg tcgtgaaact aataaatgca aaaattgtcc cggctgcggc
     9121 gctactgtgg gagaagtctt tgcgcagtat cagcaaaaac accagcgtaa aaatgcaaaa
     9181 tccaatacta aatttcaacc agggataaaa atgcagggta taaattagcg ctatcaacaa
     9241 caaaatgata ctgattgccc atgcgagctt tgcccggaac agtaagccaa tggagttcag
     9301 gacaagaaag acgccgagca taaatagtgg ggcgtttgcc agcaaggaga gatccaactc
     9361 tgaaaatgct ttgatatgga aaatatctag caaattgacc gacataccat agattgtttt
     9421 aaaaataagc aatccattta aaaagacggc cagcgcgaga atgtcgtgcc gtagggtcac
     9481 ccataaattt gttgctgttt gtttgaatgt agcccagtga ctcactgata cctctgtaac
     9541 cacaattttg tttaattatc ttagcgtgca cattttctga acatacatgc agcgcgtgaa
     9601 tgtgttaaac aatagtagat gactttatcc gcagtaatca aaggttttga gcgagcaact
     9661 gtacctcagg aaaggtcatt tttcctgaat atgctcacat catataaaga aatacagata
     9721 aagttattat ctgcttgtgg tggtgaatgc actgaccggc tataaggaaa ggccaaacaa
     9781 gaacacggtt gcaaaaaccg tgcccttaaa tattgaatct ctattcagaa cactttctta
     9841 aatggtttca ctgaaacgtg ttcatagact cctgccgcta cgtacgggtc agcatcggcc
     9901 caggcctgag ctgcttccag cgattcaaat tcagcaataa cggttgagcc agtaaatccc
     9961 gcagcccctg gatcgttact gtctaccgct ggcattggac cagctgtcaa caaacgacct
    10021 tcatcatgca gtaactgtaa acgtgctaaa tgtgccggac gaacggaaag gcgtttttcg
    10081 aggctatcag ctttgtcttg agcgtaaata acatacaaca cgggcacaac tccttgttcg
    10141 ggaaagttgt aaagtacgtt atttgaaagg gcgaagatct gcaacggaaa gatgatgtct
    10201 ttgttaagac catgtataaa gtaaggttaa ttacggcaaa aatgacattt tcactgatcc
    10261 tgatcgtctt accttattga atatgattgc tatttgcatt taaaatcgag gcttggtttt
    10321 tctactgaaa tgattatgac ttcaatgacc cttgatttac ctcgccgctt cccctggccg
    10381 acgttacttt cggtctgcat tcatggtgct gttgtggcgg gtctgctcta tacctcggta
    10441 catcaggtta ttgaactacc tgcgcctgcg cagccaattt ctgtcacgat ggttgcgcct
    10501 gctgatctcg aaccgccaca agccgttcag ccgccaccgg agccggtggt agagccagaa
    10561 ccggaacctg agccgatccc cgaaccgcca aaagaagcac cggtggtcat tgaaaagccg
    10621 aagccgaaac ctaagccaaa accgaagccg gtgaaaaagg tacaggagca gccaaaacgc
    10681 gatatcaaac ccgtagagtc gcgtccggca tcaccgtttg aaaatacggc accggcacgc
    10741 ctgatatcaa gtacagcaac ggctgcaacc agcaagccgg ttaccagtgt ggcttcaggg
    10801 ccacgcgcat taagccgtaa tcagccgcag tatccggcac gagcacaggc attgcgcatt
    10861 gaagggcagg ttaaagttaa atttgacgtc acgccggatg gtcgcgtgga taacgtacaa
    10921 atcctctcag ccaagcctgc gaacatgttt gagcgtgagg tgaaaaatgc gatgcgcaga
    10981 tggcgttatg agccgggtaa gccaggcagt gagattgtgg tgaatatcct gtttaaaatt
    11041 aacggcacca ccgaaattca gtaagcagaa agtcaaaagc ctccgaccgg aggcttttga
    11101 ctattactca acaggtaagg cgcgaggttt tccttcagga tcaaccgcga catacttaaa
    11161 taatgcttct gtcgctttat agcgttgccc gattggttca gacgctactt ttttcaccca
    11221 cacttcaata ttaatgctga ccgatgtcgt ccctttctgg acacagcgtg catagcagca
    11281 caccacatcg ccgaccgcaa ccggccgtaa gaaagtcatt ccttcaaccc gcacggtcac
    11341 tacgcgaccg tgggcaattt ctttcgccag aatagcgccg ccaatatcca tttgtgacat
    11401 taaccaacca ccaaagatgt caccattggc attggtatcg gcgggcatgg ctaaagtacg
    11461 taaaacaaga tcgccctgag ggacgttatg tgttgtagac atggtaaaac cgacttaaaa
    11521 ggaaaatcac aggcgcgatg ctactatgat tttcctgagg agaacagagg agatacagcg
    11581 ccagccccga aggactggca gtctggttag gatttatctt cctgcggcat gtggcggtag
    11641 atatagatac cgcttaacaa tgtgaagatt aaggtaaggg cggtcagtcc aaagacttta
    11701 aagttgaccc aaatattttg cggcagccag aatgcgatgt agatgtttgc cagaccgcaa
    11761 aggataaaga aaacagccca ggccagattc agcttcgacc ataccggttg cggcagcgtg
    11821 agttctttac ccagcatccg ctgaattagc ggctttttca tcacccattg gctgactaac
    11881 agggctcccg caaacagagc ataaatgact gtaaccttcc atttaataaa ctcatcattg
    11941 tggaagaaca gcgtcaagcc accgaagacg accaccagaa caaaagtgat cagggccatc
    12001 ttctcaacct tacgaaagcg aacccagcta tagataagca caatcgccgt ggcgacgatc
    12061 agcgccgcag tagccgcata gatgtcataa atcttgtaaa acgcgaaaaa gacaaccagc
    12121 ggtaaaaaat caagaaactg cttcatttta cgattccgta atcaaatgct taaggttatt
    12181 ggcgaatcaa catatacaga cggaacagat agatgagcaa tacggctgaa atcaggttgc
    12241 tcaaggtgtt cgccagtacg gcaccaattt ccggggttaa tgcggcaaaa gaagaggcaa
    12301 aaagcagcaa cagtgttttt gccagcaacc agctcagtac tgcgggtgcc accagacgca
    12361 tattcgccca agtcagccgc atactgctac gcatcgaggc aaaaatgccc attttgtcct
    12421 gtaccagcat caccggtgcc agggccagta aaatggccat gataattccc ggaacgacca
    12481 ctagcatgat gccaatctgt actaaaaggg tagtcagaaa aatcagaata aataactttg
    12541 gcaatatcgg cgcactggca ccaatagctc gcagcgcact gactctctga cccgcagaca
    12601 ccagctggat aattaatatt acgcctccgg cgagaatggc gttaccgatt aatcctgaaa
    12661 aagtggacgc cgctgaagcc tgcagcaaaa tttgttgctg ttccggtgac atattctgaa
    12721 ccaggtcgaa caacccacta ctgccgctaa cgggcacgcc gtcattgagc tgcgcaagct
    12781 gtgcatcact gggtgagaaa acatgcccta acaccactgt gataaacgca catagcaacg
    12841 ataccaacag aatggtcata aattgattac ggaagaaatt tccggtgtca cggtatacgg
    12901 actgcgccgt gatagacatg cactctcctt gagttttatg caggtgttaa ttagcgggca
    12961 attgtaccct ggttaagcct cgggtggcag catcaggtct tgtatggaaa agcatatctt
    13021 tgtaaagcgg aggtaattgc tggccttcag gcgtgggcaa accgcggcaa gtggcgatcg
    13081 agttaatatt tgcgtagcga aaatatttaa aaattgattt aaatcacgtt aaccaggatt
    13141 ctcaatgcaa cttctaaatt aatccagatc aataaagggt gaattatcat atgtaatgtg
    13201 atctatgtag gatcatttgt tactccaatg taggtatatt cgtcacgttt ttataaccat
    13261 aacgacggag cggatatgaa aaagttaaca gtggcggctt tggcagtaac aactcttctc
    13321 tctggcagtg cctttgcgca tgaagcaggc gaatttttta tgcgtgcagg ttctgcaacc
    13381 gtacgtccaa cagaaggtgc tggtggtacg ttaggaagtc tgggtggatt cagcgtgacc
    13441 aataacactc aactgggctt gacgtttact tatatggcga ccgacaacat tggtgtggaa
    13501 ttactggcag cgacgccgtt ccgccataaa atcggcaccc gggcgaccgg cgatattgca
    13561 accgttcacc atctgccacc aacactgatg gcgcagtggt attttggtga tgccagcagc
    13621 aaattccgtc cttacgttgg ggcaggtatt aactacacca ccttctttga taatggattt
    13681 aacgatcatg gcaaagaggc agggctttcc gatctcagtc tgaaagattc ctggggagct
    13741 gccgggcagg tgggggttga ttatctgatt aaccgtgact ggttggttaa catgtcagtc
    13801 tggtacatgg atatcgatac caccgccaat tataagctgg gcggtgcaca gcaacatgat
    13861 agcgtacgcc tcgatccgtg ggtgtttatg ttctcagcag gatatcgttt ttaattccgc
    13921 acaaaaacga ccccgtaata tacggggtca ataaggacat ggca
//
LOCUS       DADMHM010000099        13875 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.100, whole genome shotgun sequence.
ACCESSION   DADMHM010000099 DADMHM010000000
VERSION     DADMHM010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13875)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13875)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13875
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.100"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..401
                     /locus_tag="JN125_002512"
     CDS             <1..401
                     /locus_tag="JN125_002512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8872265.1"
                     /translation="ATITAAIIYLYPSPLVCNAGAFVIGFSAAGGILQLGVSVMSEFF
                     PKSKAKVTSIYMMMGGLANFVIPLITGYLSNIGLQYIIVLDFTFALLALITAIIVFIR
                     YYRVFIIPENDVRFGERKFSTRLNTIKHRG"
     gene            413..1279
                     /gene="ydiB"
                     /locus_tag="JN125_002513"
     CDS             413..1279
                     /gene="ydiB"
                     /locus_tag="JN125_002513"
                     /EC_number="1.1.1.282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinate/shikimate dehydrogenase"
                     /protein_id="HAY8872266.1"
                     /translation="MDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEV
                     DNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVNDDGYLR
                     GYNTDGTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEF
                     FDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVN
                     DISLLHPGLLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFP
                     LEYVKQVMGFGA"
     gene            1311..2069
                     /gene="aroD"
                     /locus_tag="JN125_002514"
     CDS             1311..2069
                     /gene="aroD"
                     /locus_tag="JN125_002514"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HAY8872267.1"
                     /translation="MKTVTVKDLVIGTGAPKIIVSLMAKDIARVKSEALAYREADFDI
                     LEWRVDHFADLSNVESVMAAAKILRETMPEKPLLFTFRSAKEGGEQAISTEAYIALNR
                     AAIDSGLVDMIDLELFTGDDQVKEAVACAHAHDVKVVMSNHDFHKTPEAEEIIARLRK
                     MQSFNADIPKIALMPQSTSDVLTLLAATLEMQEQYADRPIITMSMAKTGVISRLAGEV
                     FGSAATFGAVKKASAPGQISVNDLRTVLTILHQA"
     gene            2215..3810
                     /locus_tag="JN125_002515"
     CDS             2215..3810
                     /locus_tag="JN125_002515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl CoA:acetate/3-ketoacid CoA transferase"
                     /protein_id="HAY8872268.1"
                     /translation="MKPVKPPRINGRVPVLSAQEAVNYIPDEATLCVLGAGGGILEAT
                     TLITALADKYKQTQTPRNLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRI
                     SELAEQNKIIAYNYPQGVLTQTLRAAAAHQPGIISDIGIGTFVDPRQQGGKLNEVTKE
                     DLIKLVEFDNKEYLYYKAIAPDIAFIRATTCDSEGYATFEDEVMYLDALVIAQAVHNN
                     GGIVMMQVQKMVKKATLHPKSVRIPGYLVDIVVVDPDQSQLYGGAPVNRFISGDFTLD
                     DSTKLSLPLNQRKLVARRALFEMRKGAVGNVGVDIADGIGLVAREEGCADDFILTVET
                     GPIGGITSQGIAFGANVNTRAILDMTSQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKF
                     NGKIMGTGGFIDISATSKKIIFCGTLTAGSLKTEIADGKLNIVQEGRVKKFIQELPEI
                     TFSGKIALERELDVRYITERAVFTLKEDGLHLIEIAPGVDLQKDILDKMDFTPVISPE
                     LKLMDERLFIDAAMGFVLPEAAH"
     gene            3824..4975
                     /locus_tag="JN125_002516"
     CDS             3824..4975
                     /locus_tag="JN125_002516"
                     /EC_number="1.3.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310429.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HAY8872269.1"
                     /translation="MDFSLTEEQELLLASIRELITTNFAEEYFRTCDQNGTYPREFMR
                     ALADNGISMLGVPEEFGGIPADYVTQMLALMEVSKCGAPAFLITNGQCIHSMRRFGSA
                     EQLRKTAESTLETGDPAYALALTEPGAGSDNNSATTTYTRKNGKVYINGQKTFITGAK
                     EYPYMLVLARDPQPKDPKKAFTLWWVDSSKPGIKINPLHKIGWHMLSTCEVYLDNVEV
                     EESDMVGEEGMGFLNVMYNFEMERLINAARSTGFAECAFEDAARYANQRIAFGKPIGH
                     NQMIQEKLALMAIKIDNMRNMVLKVAWQADQHQSLRTSAALAKLYCARTAMEVIDDAI
                     QIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYVAGRQILKDYQNK"
     gene            complement(5018..5929)
                     /locus_tag="JN125_002517"
     CDS             complement(5018..5929)
                     /locus_tag="JN125_002517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HAY8872270.1"
                     /translation="MYQRCFDNASETLFVAGKTPRLSRFAFSDDPKWESGHHVHDNET
                     ELIYVKKGVARFTIDSSLYVAHADDIVVIERGRLHAVASDVNDPATTCTCALYGFQFQ
                     GAEENQLLQPHSCPVIAAGQGKEVIKTLFNELSVILPQSKNSQTSSLWDAFAYTLAIL
                     YYENFKNAYRSEQGYIKKDVLIKDILFYLNNNYREKITLEQLSKKFRASVSYICHEFT
                     KEYRISPINYVIQRRMTEAKWSLTNTELSQAEISWRVGYENVDHFAKLFLRHVGCSPS
                     DYRRQFKNCFAEQEILSEFPQPVSLVG"
     gene            6245..7009
                     /locus_tag="JN125_002518"
     CDS             6245..7009
                     /locus_tag="JN125_002518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein"
                     /protein_id="HAY8872271.1"
                     /translation="MKIITCFKLVPEEQDIVVTPEYTLNFDNADAKISQFDLNAIEAA
                     SQLATDDDEIAALTVGGLLLQNSKVRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALA
                     AAIEKIGFDLLIFGEGSGDLYAQQVGLLVGEILQLPVINAVSAIQRQGNTLVIERTLE
                     DDVEVIELSVPAVLCVTSDINVPRIPSMKAILGAGKKPVNQWQASDIDWSQSAPLAEL
                     VGIRVPPQTERKHIIIDNDSPEAITELAEHLKKALN"
     gene            7029..7967
                     /locus_tag="JN125_002519"
     CDS             7029..7967
                     /locus_tag="JN125_002519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit alpha"
                     /protein_id="HAY8872272.1"
                     /translation="MSQLNSVWVFSDNPERYAELFGGAQQWGQQVYAIVQNTDQAQAV
                     MPYGPKCIYVLEQNDALQRTENYAESIAAPLKDKHPAMLLLAATKRGKALAARLSVQL
                     NAALVNDATAVDIVDGHICAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTSDTSH
                     KCPTETVPYVAPRHEILCRERRAKAASSVDLSKAKRVVGVGHGLAAQDDLKMVHELAA
                     VLNAEVGCSRPIAEGENWMERERYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKVI
                     VAINKDKNAPIFNYADYGLVGDIYKVVPALISQLSR"
     gene            8023..9312
                     /locus_tag="JN125_002520"
     CDS             8023..9312
                     /locus_tag="JN125_002520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HAY8872273.1"
                     /translation="MSDNKFDAIVVGADVAGSVAALVMARAGLDVLVIERGDSAGCKN
                     MTGGRLYAHTLEAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHAS
                     YTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILQANVVVLAD
                     GVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSD
                     GLMGGGFLYTNKDSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEY
                     SAHMVPEGGLAMVPQMVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAA
                     KEREDFSASSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMVADIMNEMF
                     TIDGKPNQPVRKMIMGHAKKIGLINLLKDGIKGATAL"
     gene            9309..9602
                     /locus_tag="JN125_002521"
     CDS             9309..9602
                     /locus_tag="JN125_002521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HAY8872274.1"
                     /translation="MSQNATVNVDIKLGVNKFHVDEGHPHIILAANPDINEFRKLMKA
                     CPAGLYKQDDAGNIHFDSAGCLECGTCRVLCGNTILEQWQYPAGTFGIDFRYG"
     gene            9605..11305
                     /gene="fadK"
                     /locus_tag="JN125_002522"
     CDS             9605..11305
                     /gene="fadK"
                     /locus_tag="JN125_002522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416216.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="medium-chain fatty-acid--CoA ligase"
                     /protein_id="HAY8872275.1"
                     /translation="MHPTGPHLGPDVLFRESKMKVTLTFNEQRRAAYRQQGLWGDASL
                     ADYWQQTARAMPDKIAVVDNHGATYTYSALDHALSCLANWMLAKGIESGDRIAFQLPG
                     WCEFTVIYLACLKIGAVSVPLLPSWREAELVSVLNKCQAKMFFAPTLFKQTRPVDLIL
                     PLQNQLPQLQQIVGVDKLAPATSSLSLSPIIADNTSLTTAITTHGDELAAVLFTSGTE
                     GLPKGVMLTHNNILASERAYCARLNLTWQDVFMMPAPLGHATGFLHGVTAPFLIGARS
                     VLLDIFTPDACLALLEQQRCTCMLGATPFVYDLLNVLEKQPADLSALRFFLCGGTTIP
                     KKVARECQQRGIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDDAR
                     KTLPPGCEGEEASRGPNVFMGYFDEPELTARALDEEGWYCSGDLCRMDEAGYIKITGR
                     KKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLS
                     LEEVVAFFSRKRVAKYKYPEHIVVIEKLPRTASGKIQKFLLRKDIMRRLTQDVCEEIE
                     "
     gene            complement(11362..13740)
                     /gene="ppsA"
                     /locus_tag="JN125_002523"
     CDS             complement(11362..13740)
                     /gene="ppsA"
                     /locus_tag="JN125_002523"
                     /EC_number="2.7.9.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000069371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate synthase"
                     /protein_id="HAY8872276.1"
                     /translation="MSNNGSSPLVLWYNQLGMNDVDRVGGKNASLGEMITNLSGMGVS
                     VPNGFATTADAFNQFLDQSGVNQRIYELLDKTDIDDVTQLAKAGAQIRQWIIDTPFQA
                     ELENAIREAYAQLSADDENASFAVRSSATAEDMPDASFAGQQETFLNVQGFDAVLVAV
                     KHVFASLFNDRAISYRVHQGYDHRGVALSAGVQRMVRSDLASSGVMFSIDTESGFDQV
                     VFITSAWGLGEMVVQGAVNPDEFYVHKPTLAANRPAIVRRTMGSKKIRMVYAPTQEHG
                     KQVKIEDVPQEQRDIFSLTNEEVQELAKQAVQIEKHYGRPMDIEWAKDGHTGKLFIVQ
                     ARPETVRSRGQVMERYTLHSQGKIIAEGRAIGHRIGAGPVKVIHDISEMNRIEPGDVL
                     VTDMTDPDWEPIMKKASAIVTNRGGRTCHAAIIARELGIPAVVGCGDATERMKDGENV
                     TVSCAEGDTGYVYAELLEFSVKSSSVETMPDLPLKVMMNVGNPDRAFDFACLPNKGVG
                     LARLEFIINRMIGVHPRALLEFDDQEPQLQNEIREMMKGFDSPREFYVGRLTEGIATL
                     GAAFYPKRVIVRLSDFKSNEYANLVGGERYEPDEENPMLGFRGAGRYVSDSFRDCFAL
                     ECEAVKRVRNDMGLTNVEIMIPFVRTVDQAKAVVEELARQGLKRGENGLKIIMMCEIP
                     SNALLAEQFLEYFDGFSIGSNDMTQLALGLDRDSGVVSELFDERNDAVKALLSMAIRA
                     AKKQGKYVGICGQGPSDHEDFAAWLMEEGIDSLSLNPDTVVQTWLSLAELKK"
BASE COUNT         3535 a         3428 c         3527 g         3385 t
ORIGIN      
        1 tggcaacaat aacagcagcc attatctatc tgtacccttc tccactggtg tgtaatgccg
       61 gcgcctttgt tatcggtttc tcagcagctg gcggcatttt acagctcggt gtttcggtca
      121 tgtcagagtt tttcccaaaa agcaaagcca aagtcaccag tatttatatg atgatgggtg
      181 gactggctaa ctttgttatt ccgctgatta ccggttatct gtcgaacatc ggccttcaat
      241 atatcattgt tctcgatttt actttcgcgc tgctggccct gattaccgca attattgttt
      301 ttatccgcta ttaccgcgtt tttattattc ctgagaatga tgtgcggttt ggcgagcgta
      361 aatttagcac ccggttaaac acaattaagc atagaggtta aaggagttaa ttatggatgt
      421 taccgcaaaa tacgaattga ttgggctgat ggcctatcct atccgccaca gtttatcgcc
      481 tgaaatgcag aataaagcct tagaaaaagc gggattgcca tttacctata tggcctttga
      541 agtggataac gatagttttc ccggagcaat tgaaggatta aaagctctaa aaatgcgcgg
      601 aactggtgta tcaatgccga acaaacaact ggcttgtgaa tatgttgatg aattaacgcc
      661 agcagccaaa ctggtgggtg ccatcaacac catcgttaat gatgatggct acctgcgcgg
      721 ctataacacc gacggcacgg gccatattcg cgccattaaa gagagcggtt ttgatatcaa
      781 aggcaaaaca atggtgctgt taggggccgg aggtgcctca acggcgattg gcgcgcaggg
      841 ggcaattgaa ggtttaaaag aaattaaact ctttaaccgt cgggatgagt tcttcgataa
      901 agccctcgcc ttcgcgcagc gggttaacga aaacaccgat tgtgtcgtca cggttaccga
      961 tctcgccgat cagcaagcct ttgctgaagc cctggcttcc gccgacattt taaccaatgg
     1021 cacaaaagtg ggtatgaaac cccttgagaa tgaatcatta gttaatgata tcagtctgtt
     1081 acatccggga cttctggtca ctgaatgcgt gtataacccg catatgacga agttattgca
     1141 gcaggcgcaa caagctggtt gcaaaacgat tgatggatac ggcatgttgt tgtggcaagg
     1201 ggctgaacag ttcacgttat ggactggcaa agatttccct ctggaatatg ttaaacaggt
     1261 catggggttc ggtgcctgac aggctgaccg cgtgcagaaa gggtaaaaaa atgaaaaccg
     1321 taactgtaaa agatctcgtc attggtacgg gcgcacctaa aatcatcgtc tcgctgatgg
     1381 cgaaagatat cgcccgcgtg aaatccgaag ctctcgccta tcgtgaagcg gactttgata
     1441 ttctggaatg gcgtgtggac cactttgccg acctctccaa tgtggagtct gtcatggcgg
     1501 cggcaaaaat tctccgcgaa accatgccag aaaaaccgct gctgtttacc ttccgcagtg
     1561 ccaaagaagg cggcgagcag gcgatttcca ccgaggctta tattgctctc aatcgtgcag
     1621 ccatcgacag cggcctggtt gatatgatag atctggagtt atttaccggc gatgatcagg
     1681 ttaaagaagc cgtcgcctgc gcccacgcgc atgatgtgaa agttgtcatg tccaaccatg
     1741 acttccataa aacgccggaa gccgaagaaa tcattgcccg tctgcgcaaa atgcagtcct
     1801 tcaacgccga tattcctaag attgcgctga tgccgcaaag taccagcgat gtgctgacgt
     1861 tgcttgccgc gaccctggag atgcaggagc agtatgccga tcgtccaatc atcacaatgt
     1921 caatggcaaa aactggcgta atttctcgtc tggctggtga agtatttggc tcggcggcaa
     1981 cttttggtgc ggtaaaaaaa gcctctgcgc cagggcaaat ctcggtaaat gatttacgca
     2041 cagtattaac tattttacat caggcataag caataatatt tcggcgggaa tatcctcccc
     2101 cgccgaacta aaaaaaatat attcaaccgt atttaataaa aatatttcgt gagtctctgt
     2161 gcgctaaata tccatctggc gtagggaaaa tcacacctga atcaggaatt aacaatgaaa
     2221 cctgtaaaac cacctcgtat taatggacga gtgccggtcc tgtcggcaca ggaagcggtg
     2281 aattatattc ccgacgaagc aacactttgt gtgttaggcg ctggcggcgg tattctggaa
     2341 gccacgacgt taattactgc tcttgctgat aaatataaac agactcaaac gccacgtaat
     2401 ttatcgatta ttagtccaac agggcttggc gatcgcgccg accgtggtat tagtccgctg
     2461 gcgcaagaag gtctggtgaa atgggcatta tgtggtcact ggggacaatc gccgcgtatt
     2521 tctgaactcg cagaacaaaa taaaattatt gcttataact atccacaagg tgtacttaca
     2581 caaaccttac gcgccgccgc agcccaccag cctggtatta ttagtgatat tggcatcggg
     2641 acatttgtcg atccacgcca gcaaggcggc aaactgaatg aagtcacgaa agaagacctg
     2701 attaaactgg tcgagtttga taacaaagaa tatctctatt acaaagcgat tgcgccagat
     2761 atcgccttca ttcgcgctac cacctgcgac agtgaaggct acgccacttt tgaagatgag
     2821 gtgatgtatc tcgacgcatt ggttattgcc caggcggtgc acaataacgg cggtattgtg
     2881 atgatgcagg tgcagaaaat ggttaagaaa gccacgctgc atcctaaatc tgtccgtatt
     2941 ccgggttatc tggtggatat tgtggtggtc gatccggatc aaagccaact gtatggcggt
     3001 gcgccggtta accgctttat ttctggtgac ttcactcttg atgacagcac caaacttagc
     3061 ctgcccctaa accaacgtaa attagttgcg aggcgtgcat tattcgaaat gcgtaaaggc
     3121 gcggtgggga atgtcggcgt cgatattgct gacggtattg gcctggtcgc ccgggaagaa
     3181 ggttgtgctg atgactttat tctgacggta gaaacaggtc cgattggcgg aattacttca
     3241 caggggatcg cctttggcgc gaacgtgaat acccgtgcca ttctggatat gacgtcccag
     3301 tttgattttt atcacggtgg tggtctggat gtttgttatt tgagttttgc tgaagtcgac
     3361 cagcacggta acgtcggcgt gcataaattc aatggcaaaa tcatgggtac cggtggattt
     3421 attgatatca gtgccacctc gaagaaaatt attttctgcg gcacgttaac cgcgggcagt
     3481 ttaaaaacag aaattgccga tggcaaatta aatatcgtcc aggaaggacg ggtgaagaaa
     3541 tttattcagg aactaccgga aattactttt agcggaaaaa tcgcgctcga acgggaactg
     3601 gatgttcgtt acatcaccga acgtgctgta ttcacgctga aagaagacgg cctgcattta
     3661 atcgaaatcg cccctggcgt cgatttacaa aaagatattc tcgacaaaat ggatttcacc
     3721 ccagtgattt cgccagaact caaactgatg gacgaaagat tatttatcga tgcggcgatg
     3781 ggttttgtcc tgcctgaagc ggctcattaa caggagtatc acgatggatt tttctttaac
     3841 tgaagaacaa gaactgctgc tggccagtat tcgcgaactg attacgacta actttgcgga
     3901 agagtatttc cgcacctgcg atcaaaacgg gacatatccg cgtgagttta tgcgggcgct
     3961 ggcggataac ggcatttcta tgcttggcgt gccggaagag ttcggtggca tccctgcgga
     4021 ttacgtcacc cagatgctgg cgctgatgga agtgtcaaaa tgcggtgctc cggcattttt
     4081 gattaccaac ggtcaatgta ttcacagtat gcgccgtttc ggttctgcag agcagctacg
     4141 taaaacggca gagagcaccc tggaaacggg tgatcccgcc tatgccctgg cgttgacgga
     4201 gccaggcgca ggctcagaca acaacagtgc cactaccact tacacgcgta aaaacggcaa
     4261 ggtttacatc aacggacaga aaacctttat taccggtgcg aaagagtacc cgtatatgct
     4321 ggtgttggcg cgcgatccgc aaccgaaaga tcccaaaaaa gccttcaccc tgtggtgggt
     4381 cgactccagt aagcccggca ttaagattaa cccgctgcat aaaatcggct ggcatatgct
     4441 cagcacctgc gaagtctatc tcgacaacgt ggaggttgaa gagagcgaca tggtgggcga
     4501 agaaggaatg ggtttcctca atgtgatgta caactttgag atggagcgcc tgatcaacgc
     4561 cgcgcgcagc accggctttg ccgaatgcgc ctttgaagat gccgcccgct atgccaacca
     4621 acgtatcgct tttggtaagc ccattggtca taaccagatg atccaggaaa aactggcgct
     4681 gatggcgatt aagatcgaca acatgcgcaa catggtgctg aaagtggcat ggcaagccga
     4741 tcagcatcag tcactgcgca ccagcgcggc gctggcaaaa ctgtattgcg cacgtaccgc
     4801 aatggaagtc attgatgatg cgattcaaat catgggcggt ctgggctata ccgatgaagc
     4861 gcgcgtctcc cgcttctggc gtgatgtccg ttgtgaacgt atcggcggcg gtacagacga
     4921 aattatgatt tacgtagcag gtcggcagat cctgaaagac tatcagaaca aataatctgc
     4981 aggcggcgca gcttcttaac aaactgcgcc gccagattta tccaacaaga cttaccggtt
     5041 gaggaaattc agataggatt tcttgttccg caaaacagtt tttaaattgt ctacggtaat
     5101 cgctgggcga acaaccgaca tggcgcaaaa acagtttggc aaagtgatcg acattttcat
     5161 aacccacacg ccaggagatc tctgcctgtg ataattcagt attagtgagt gaccattttg
     5221 cttccgtcat acgccgttga ataacatagt taatagggga aatacgatac tctttggtaa
     5281 attcatggca aatataactg acgctggcac gaaatttttt cgataactgt tctaaagtga
     5341 ttttttcgcg ataattatta ttcagataga aaagaatatc ttttatcaga acatcttttt
     5401 taatataccc ctgctccgaa cgataagcat ttttaaaatt ttcgtagtaa agaatggcta
     5461 acgtataggc aaatgcatcc cataacgaag atgtttggct atttttactt tgcggcaaaa
     5521 tcacacttag ctcattaaat aaggttttta tgacttcttt tccctgcccc gcggcaatta
     5581 ccggacaaga atgcggttgc agtagctgat tttcctcagc cccctgaaac tgaaagccgt
     5641 acagcgcaca ggtacacgtc gttgccggat cgttaacgtc agaggccacc gcatgcagcc
     5701 tgccgcgttc tatcaccaca atgtcatccg catgtgcgac atataacgaa gaatcgatgg
     5761 taaaccttgc aacccctttc ttgacgtaaa tcaactcggt ttcattgtca tgaacgtgat
     5821 gtccggactc ccattttgga tcatcgctaa atgcaaaacg tgaaagccgt ggcgttttac
     5881 cggcgacaaa cagcgtttca ctggcgttat caaaacagcg ttgatacatg acaacctccc
     5941 tattccatga gcaagcaaaa acaatatatg ccggataaaa tacggcgtgt attgcggtta
     6001 tacaaccgcg tttagcgaga gctaaacaag attatttaca ctgaatgcaa gattgtacgg
     6061 tcatggaata actatattgc cgcaaattgc acttttgttt tagcgatcgc attttttttg
     6121 caagattgtt ggcaaggaaa acagcttgct ccgtcgaaaa ccccgcaccg ctatcgcaca
     6181 ctattttcag gccattttta ccttccatcg gagatggttc cgtatgcgac tcacaggaga
     6241 aatcatgaaa ataataacct gctttaagct ggtgcctgaa gaacaggaca ttgttgtcac
     6301 tccagaatac accctgaatt tcgacaatgc cgacgccaaa atcagccagt tcgatctcaa
     6361 tgccattgaa gctgcaagcc agctcgcaac agatgacgat gagatagccg cgctgaccgt
     6421 tggcggctta ttgttgcaga actcgaaagt gcgcaaagat gtgctatccc gcgggccgca
     6481 cagcctgtat ttggtgcagg atgcgcaact tgaacatgca ctgcctctcg ataccgcaaa
     6541 agcgctggcg gcagcaattg aaaagatcgg cttcgattta ctgatctttg gtgaaggttc
     6601 cggcgacctt tatgcccagc aggttggctt gctggtcgga gaaattctgc aacttccggt
     6661 gattaatgca gtgagtgcta ttcagcgtca gggcaataca ctggtgattg aacgcacgct
     6721 tgaagatgat gttgaagtta ttgaactctc tgttccagcc gtgctctgcg tcacctccga
     6781 tattaacgtg ccacgcattc cttcgatgaa agccattctc ggcgcgggta aaaaaccggt
     6841 aaatcagtgg caggcaagtg atattgactg gagccagagc gcgccacttg ctgaactggt
     6901 cggcattcgc gtaccgccgc aaacagaacg taagcacatc attatcgata acgattcgcc
     6961 ggaggccatt accgagctgg cggaacatct gaagaaagcc ctgaactgaa gcctacggag
     7021 aagaaacgat gagtcaatta aacagcgtct gggtctttag cgataatcct gaacgttatg
     7081 ctgaactgtt tggcggcgct cagcaatggg gccaacaggt gtatgccatt gtacaaaata
     7141 ccgaccaggc gcaggcagtt atgccttatg gtccaaaatg tatttatgtt cttgagcaaa
     7201 acgacgcgct gcaacgcact gaaaattacg ccgaaagcat tgctgccccg ctgaaagata
     7261 aacaccccgc tatgttgctg ttggccgcga cgaaacgtgg taaagctctg gcagcacggt
     7321 taagtgtgca actgaatgcg gcgctggtga acgatgccac ggcggtggat attgtcgatg
     7381 gtcacatttg cgccgaacac cggatgtatg gcgggttagc gttcgctcag gaaaagatca
     7441 acagcccgct ggcgatcatt acccttgcac ccggtgttca ggaaccgtgc accagtgata
     7501 cctctcataa gtgcccgaca gaaacggtac cttatgttgc tccgcgtcat gaaattctct
     7561 gtcgcgaacg ccgtgcgaaa gccgcaagca gcgtggacct gagcaaagca aaacgtgtgg
     7621 ttggcgtcgg tcatggtctg gcggcgcagg atgacctgaa aatggtccac gaactggcgg
     7681 cggtgctgaa tgctgaagtc ggctgttcac gtccaattgc cgaaggcgag aactggatgg
     7741 agcgtgaacg ttatatcggt gtctccggcg tgttgctgaa atccgatctc tacctgacgc
     7801 tggggatctc cgggcagatc cagcatatgg ttggcggcaa cggcgcaaaa gtgattgtcg
     7861 ccatcaataa agataaaaat gcgccaatct tcaattatgc cgactacggc ctggtgggcg
     7921 atatctacaa agtcgtccct gccctgatta gccagttgag ccgctaattc ccctttcaac
     7981 cacatctccc gctgtaaacg cagcgggaag ggagcataac gcatgtcgga taacaaattt
     8041 gatgccattg tggtcggtgc ggacgttgct ggtagcgttg ccgcactggt catggcgcga
     8101 gccggactgg atgtcctggt gatagaacgc ggcgacagtg ccggatgtaa aaacatgacc
     8161 ggcgggcgtc tttatgccca cacacttgaa gcaatcattc caggctttgc agtatcagcg
     8221 ccggtagaac gcaaggtcac acgcgagaaa atctccttct taaccgaaga aagcgccgtt
     8281 accctcgatt ttcaccgcga gcaaccagat gttccgcaac acgcatctta taccgtattg
     8341 cgtaatcgtc tggacccgtg gttgatggaa caagccgagc aggcgggcgc acagtttatc
     8401 ccgggcgttc gcgtcgatgc gttggttcgt gaaggaaaca aggtcactgg cgtgcaggcc
     8461 ggggatgata ttctccaagc gaatgtggtg gttctagctg atggcgtaaa ctcgatgctt
     8521 ggccgctcgc tgggaatggt tcccgcttcc gatccgcatc attacgctgt tggtgttaaa
     8581 gaggttattg gcctcacacc agaacagatc aacgatcgct ttaatattac gggcgaggaa
     8641 ggtgccgcct ggctgtttgc cggttcccct tctgacggcc tgatgggcgg gggatttctc
     8701 tataccaaca aggattccat atccttgggg ctggtttgtg gattgggtga tatcgcccat
     8761 gcgcaaaaaa gcgtgccgca aatgctggaa gattttaaac aacaccccgc cattcgccca
     8821 ctaattagcg gcggcaaact gcttgaatat tccgcgcata tggtgccaga aggcggtctg
     8881 gcaatggtgc cgcagatggt taacgatggc gtgatgatcg ttggtgacgc cgcaggcttc
     8941 tgcctgaatt tgggttttac agttcgtggc atggatttag ccattgcatc ggctcaggct
     9001 gccgccacaa cggtgatcgc cgccaaagaa cgcgaggatt tctccgccag cagtctggcg
     9061 caatacaaac gtgagctgga acaaagctgc gtcatgcgcg atatgcagca tttccgcaag
     9121 atcccggcgc tgatggaaaa cccgcgcctg tttagccaat acccacgaat ggtcgccgac
     9181 atcatgaacg agatgttcac cattgacggc aaaccaaacc agccggtacg caaaatgatc
     9241 atgggacacg cgaagaaaat tgggctgatc aacttgctga aagatggcat taagggagca
     9301 accgcgctat gagccagaac gctacggtta acgtcgacat caaattaggc gtcaataaat
     9361 tccatgttga tgagggccac ccgcatatca ttctggcggc aaatcccgat atcaatgaat
     9421 tccgtaaatt aatgaaagct tgccctgccg gactttataa gcaggatgac gccggcaaca
     9481 ttcatttcga ttccgccggt tgtctggagt gcggcacctg tcgggtgctg tgcggcaaca
     9541 ctattctcga acagtggcaa tatcccgcag gcaccttcgg tattgatttt cgctacggct
     9601 aatcatgcat cccacaggcc cgcatctcgg gcctgatgtt ctgtttcgag agtccaaaat
     9661 gaaagtgaca ttaacgttca acgaacaacg tcgtgcggcg tatcgtcagc aagggttatg
     9721 gggcgatgct tcactggccg attactggca gcagaccgct cgtgcgatgc cagacaaaat
     9781 tgccgtggtc gacaatcatg gtgcaacgta cacctatagc gcgctcgatc acgccttgag
     9841 ctgtctggca aactggatgt tagcgaaggg tattgaatca ggcgatcgca tcgcatttca
     9901 actgcctggc tggtgtgaat ttaccgttat ctatcttgcc tgcctgaaaa tcggtgcggt
     9961 ttccgtgccg ctgttgcctt cctggcggga agcagaactg gtgtcggtgc tcaataagtg
    10021 tcaggcaaaa atgttctttg caccgacgtt gtttaaacaa acacgtccgg tagatttaat
    10081 cctgccgctg caaaatcagc ttccacaact acaacaaatt gtcggcgtgg acaaactggc
    10141 tcccgccacc tcttccctct cattaagtcc gattatcgcc gacaatacct cactgaccac
    10201 ggcgataacg acccacggcg atgaattagc tgcggtgctg tttacctccg gaaccgaggg
    10261 tctgccaaag ggcgtgatgc taacgcataa caatattctc gccagtgagc gggcttattg
    10321 cgcgcgactg aatctgacct ggcaggatgt ctttatgatg cctgcgccac ttggtcacgc
    10381 aacgggcttt ctgcatggcg taacggcacc attcttaatt ggcgctcgca gcgtgttgtt
    10441 agatattttc actcctgatg cgtgtctcgc gctgcttgag cagcagcgtt gcacctgtat
    10501 gctaggcgca acgccgtttg tctatgatct tttgaatgta ctagagaaac aacccgcgga
    10561 cctttcagcg ctgcgtttct ttctttgcgg cggtaccaca atccccaaaa aagtggcacg
    10621 tgaatgccag cagcgcggca ttaaattatt aagtgtttat ggttccacag aaagttcgcc
    10681 gcatgcggtg gtgaatctcg atgatccttt gtcgcgcttt atgcacaccg atggttacgc
    10741 tgccgcaggt gtagagatta aagtggtcga tgacgcacgc aagaccttac cgccaggttg
    10801 cgaaggtgaa gaagcctcgc gtggccccaa tgtgtttatg gggtattttg atgaacctga
    10861 attaaccgcc cgtgcgctgg acgaagaagg ctggtattgc agcggcgatc tctgccgtat
    10921 ggatgaggct ggctatataa aaattaccgg acgcaaaaaa gatattattg tccgcggcgg
    10981 cgaaaatatt agcagccgtg aagtggaaga tattttattg cagcatccta aaattcacga
    11041 tgcctgtgtg gttgcaatgc ccgatgaacg tttaggtgaa cgatcatgcg cttatgtcgt
    11101 gctgaaagcg ccgcatcatt cattatcgct ggaagaggtg gtggcttttt ttagccgtaa
    11161 acgggtcgca aaatataaat atcctgaaca tatcgtggta atcgaaaaac taccgcgcac
    11221 tgcctcaggt aaaatacaaa agtttttgtt aagaaaagat attatgcggc gattaacgca
    11281 ggatgtctgt gaagagattg aataagtttc atcttcgggg atcacataaa cccggcgaca
    11341 aaacgccgcc gggtatttat tttatttctt cagttcagcc aggcttaacc aggtttgcac
    11401 cacggtgtcc ggattcagag acaggctatc gatcccctct tccatcaacc atgcggcaaa
    11461 atcttcgtgg tcggacggac cctgaccgca aatcccgaca tatttgccct gtttcttcgc
    11521 ggcacggata gccatcgaca gcaatgcttt caccgcatcg ttgcgctcat cgaacagttc
    11581 agacaccacg ccggagtcac gatccagacc gagcgccaac tgcgtcatgt cgtttgagcc
    11641 aattgagaag ccgtcgaaat attcgaggaa ctgctcggcc agcaaggcgt tggacgggat
    11701 ttcacacatc atgatgattt tcagcccgtt ctcaccacgc ttcagcccct gacgcgccag
    11761 ttcttcaacc accgctttcg cctggtctac ggtacgcacg aacgggatca tgatctcaac
    11821 gttggtcagc cccatgtcgt tgcgcacacg tttcactgct tcacactcca gcgcgaagca
    11881 gtcgcggaag ctgtcggaaa catagcggcc cgcgccacgg aagccgagca tcgggttctc
    11941 ttcatctggc tcgtaacgct caccaccgac caggttggca tattcgttcg atttaaaatc
    12001 agagagacgg acaatgacgc gcttcggata aaacgcggca cccagcgtcg cgatcccttc
    12061 agtcagacga ccaacgtaaa attcacgcgg agaatcaaaa cctttcatca tctcgcggat
    12121 ttcgttttgc aactgcggtt cctgatcgtc aaactcaagc agtgcgcgtg ggtggacgcc
    12181 aatcatacgg ttgatgataa attccagacg cgcaagtccc acgcctttgt tcggcagaca
    12241 ggcgaagtcg aaagctcgat ccgggttacc gacgttcatc ataactttca acggcagatc
    12301 cggcatggtt tctacgctgg agcttttcac gctaaattcc agcaactccg catagacgta
    12361 accggtatca ccttcggcac aagaaacagt gacgttctca ccgtctttca tccgttctgt
    12421 tgcatcacca cagcccacta ccgccggaat acccagttca cgagcgatga tcgccgcgtg
    12481 acaggtacga ccgccacggt tggtgacgat ggcagatgct ttcttcatga tcggttccca
    12541 gtccgggtcg gtcatgtcag tgaccagcac gtcaccaggt tcgatgcggt tcatttcgct
    12601 gatgtcatgg atgactttca ccggacccgc accgatgcga tgaccgatag cacggccttc
    12661 ggcgataatc ttaccctgtg aatgcagcgt ataacgctcc atgacctgac cgcgtgagcg
    12721 cacggtttcc ggacgcgcct gcacaatgaa cagtttgccg gtgtggccat ctttcgccca
    12781 ctcaatatcc atcgggcgac cgtagtgttt ctcaatttgt acggcctgtt ttgccagttc
    12841 ctgcacttct tcgttggtca gcgagaagat gtcacgctgt tcctgcggta cgtcttcgat
    12901 tttaacctgc ttgccgtgct cctgggtcgg cgcgtaaacc atgcggattt ttttcgaccc
    12961 catggtgcgg cgcacgatag ccgggcgatt cgccgccagt gtcggtttat gcacgtaaaa
    13021 ctcatccggg ttaaccgccc cctgcacgac catctcacca aggccccatg cggaagtgat
    13081 aaacaccacc tggtcaaagc cggattcggt atcaatggag aacatcacgc cagaagatgc
    13141 gaggtcggag cgcaccatcc gctgaacacc ggcggagagc gccacgccac ggtgatcgta
    13201 accctggtgc acacgataag agatggcgcg atcgttaaac agagaagcaa atacatgttt
    13261 cactgccacg agaacggcgt caaacccctg aacgttgagg aaggtttcct gctgaccggc
    13321 aaaggaagcg tccggcatat cttctgcggt ggcggaggag cgcaccgcaa aagaggcgtt
    13381 ttcgtcatcg gcggaaagct gagcataggc ttcgcggatg gcgttttcca gctcagcctg
    13441 gaagggagtg tcgataatcc actggcggat ttgcgcgccc gctttcgcaa gctgagtaac
    13501 atcgtcaata tccgttttat ccagcagttc ataaatgcgc tggtttacgc cgctttggtc
    13561 cagaaactgg ttaaacgcgt cggcggttgt ggcgaaacca ttcggaacgg aaacgcccat
    13621 tccggaaagg ttagtaatca tttcacccag ggaggcattt ttgcccccaa ccctgtctac
    13681 atcattcatg ccgagttggt tgtaccaaag caccagcggt gacgagccat tgttggacat
    13741 cgaacaatcc ttttgtgata aatgaacggt ttgagaaaca catttctgcg catttatctt
    13801 tgcatattta accggatgaa aaaaacggtg aatcgttcaa gcaaatatat ttttttactt
    13861 tttaagactg atccc
//
LOCUS       DADMHM010000100        13846 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.101, whole genome shotgun sequence.
ACCESSION   DADMHM010000100 DADMHM010000000
VERSION     DADMHM010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13846)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13846)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13846
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.101"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            99..419
                     /locus_tag="JN125_002524"
                     /pseudo
     CDS             99..419
                     /locus_tag="JN125_002524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016244610.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            409..939
                     /locus_tag="JN125_002525"
     CDS             409..939
                     /locus_tag="JN125_002525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001409670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HipA family
                     toxin"
                     /protein_id="HAY8872277.1"
                     /translation="MKYESDGGPGIARIMAFLMGSSEALRDRYDFMKFQVFQWLIGAT
                     DGHAKNFSVFIQAGGSYRLTPFYDIISAFPVLGGTGIHISDLKLAMGLNASKGKKMAI
                     DKIYPRHFLATATVLRFPEVQMHEILSDFARMIPAALDNVKTSLPTDFPENVVTAVET
                     NVLRLHGRLSREYGSK"
     gene            1199..1291
                     /locus_tag="JN125_002526"
                     /pseudo
     CDS             1199..1291
                     /locus_tag="JN125_002526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004120448.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
     gene            1295..1474
                     /locus_tag="JN125_002527"
                     /pseudo
     CDS             1295..1474
                     /locus_tag="JN125_002527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310134.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimH domain protein"
     gene            1808..4087
                     /gene="ydeP"
                     /locus_tag="JN125_002528"
     CDS             1808..4087
                     /gene="ydeP"
                     /locus_tag="JN125_002528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance putative oxidoreductase YdeP"
                     /protein_id="HAY8872278.1"
                     /translation="MKKKIESYQGAAGGWGAVKSVANAVRKQMDIRQDVIAMFDMNKP
                     EGFDCPGCAWPDPKHSASFDICENGAKAIAWEVTDKQVNASFFAENTVQSLLTWGDHE
                     LEAAGRLTQPLKYDAVSDCYKPLSWQQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAA
                     FLYQLFAREYGSNNFPDCSNMCHEPTSVGLAASIGVGKGTVLLEDFEKCDLVICIGHN
                     PGTNHPRMLTSLRALVKRGAKMIAINPLQERGLERFTAPQNPFEMLTNSETQLASAYY
                     NVRIGGDMALLKGMMRLLIERDDAASAAGRPSLLDDEFIQTHTVGFDELRRDVLNSEW
                     KDIERISGLSQTQIAELADAYAAADRTIICYGMGITQHEHGTQNVQQLVNLLLMKGNI
                     GKPGAGICPLRGHSNVQGDRTVGITEKPSAEFLARLGERYGFTPPHAPGHAAIASMQA
                     ICTGQARALICMGGNFALAMPDREASAVPLTQLDLAVHVATKLNRSHLLTARHSYILP
                     VLGRSEIDMQKSGAQAVTVEDSMSMIHASRGVLKPAGVMLKSECAVVAGIAQAALPQS
                     VVAWEYLVEDYDRIRNDIEAVLPEFADYNQRIRHPGGFHLINAAAERRWMTPSGKANF
                     ITSKGLLEDPSSAFNSKLVMATVRSHDQYNTTIYGMDDRYRGVFGQRDVVFMSAKQAK
                     ICRVKNGERVNLIALTPDGKRSSRRMDRLKVVIYPMADRSLVTYFPESNHMLTLDNHD
                     PLSGIPGYKSIPVELEPSN"
     gene            4335..4532
                     /gene="safA"
                     /locus_tag="JN125_002529"
     CDS             4335..4532
                     /gene="safA"
                     /locus_tag="JN125_002529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system connector SafA"
                     /protein_id="HAY8872279.1"
                     /translation="MHATTVKNKITQRDNYKEIMSVIVVVLLLTLTLIAIFSAIDQLG
                     ISEMGRIARDLTHFIINSLQD"
     gene            4607..5368
                     /gene="ydeO"
                     /locus_tag="JN125_002530"
     CDS             4607..5368
                     /gene="ydeO"
                     /locus_tag="JN125_002530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid stress response transcriptional regulator
                     YdeO"
                     /protein_id="HAY8872280.1"
                     /translation="MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY
                     ERHFKEIGFTENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERN
                     HHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKLAHPWKLKDICDCL
                     YISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYA
                     FRKHFGNSPKRVSKEYRCQSHTGMNTGNTMSALAI"
     gene            5406..6017
                     /locus_tag="JN125_002531"
     CDS             5406..6017
                     /locus_tag="JN125_002531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016245973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPASM domain-containing protein"
                     /protein_id="HAY8872281.1"
                     /translation="MQFIELLETGTPNIDFSGHSENTFRIIDFSVPPTAYGKFMSTIF
                     MQWVKNDVGEIFIRQFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIYECDHFVYP
                     QYKIGNINKSELKTMNSVQLTAQKKRISAKCQQCAYKPICNGGCPKHRITKVNNETVS
                     YFCEGYKILFSTMVPYMNAMVELAKNRVPLYHIMDVAKQMENN"
     gene            complement(5983..6105)
                     /locus_tag="JN125_002532"
     CDS             complement(5983..6105)
                     /locus_tag="JN125_002532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872282.1"
                     /translation="MTKHPTGIYVGCLVKVIRRRLRMELKESVINYSPFVLQHP"
     gene            6308..7993
                     /locus_tag="JN125_002533"
     CDS             6308..7993
                     /locus_tag="JN125_002533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
                     /protein_id="HAY8872283.1"
                     /translation="MITIPITFCMLIAKYLCLLKPFWLRKNNKTSVLLIIIILAMILG
                     VVKIQVWLNDWNNDFFNALSQKETDKLWQLVLWFPALLGIFVLISANKTWLIKLLTIR
                     WREWLTDYYLNRWFADKNYYFTQIYGEHKNTDNPDQRIAEDILLLISKTLSLSFGFIQ
                     SLSMLITFTVILWQSAGTLSFTVGGTEWNIQGYMVYTVVLIVIGGTLFTHKVGKRIRP
                     LNVEKQRSEATFRTNLVQHNKQAELIALSNAESLQRQELRDNFHTIKENWHRLMNRQR
                     WLDYWQNIYSRSLSVLPYFLLLPQFISGQINLGGLMKSRQAFMLVSNNLSWFIYKYDE
                     LAELAAVIDRLYEFHQLTEQRPTNKPKNCQHAVQVANASIRTPDNKIILENLNFHVSP
                     GKWLLLKGYSGAGKTTLLKTLSHCWPWFKGDIFSPADSWYVSQTPLIKTGLLKEIICK
                     ALPLPVDDKSLSEVLHQVGLGKLAARIHDHDRWGDILSSGEKQRIALARLILRRPKWI
                     FLDETTSHLEEQEAIRLLRLVREKLSTSGVIMVTHQPGVWNLADDICDISAVL"
     gene            8031..10403
                     /locus_tag="JN125_002534"
     CDS             8031..10403
                     /locus_tag="JN125_002534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HAY8872284.1"
                     /translation="MKRVLIPGVILCGADVAQAVDDKNMYMHFFEEMTVYAPVPVPVN
                     GNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQSTSLNQGDIRPEKISIHGASPY
                     QNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFG
                     RFNGGVIDAKIKRFNADDSKVKLGYRTTRSDWLTSHIDENNKSAFNQGSSGSTYFSPD
                     FKKNFYTLSFNQELADNFGVTAGLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALS
                     KFTWFASDRFTHDLTLKYTGSSRDYNTSTFPQSDREMGNKSYGLAWDMDTQLAWAKLR
                     TTVGWDHISDYTRHDHDIWYTELSCTYGDITGRCTRGGLGHISQAVDNYTFKTRLDWQ
                     KFAVGDVSHQPYSGAEYIYSDAWTERHNQSESYVINAAGKKTNHTIYHKGKGSLGIDN
                     YTLYMADHISWRNVSLMPGVRYDYDNYLSNHNISPRFMTEWDIFADQTSMITAGYNRY
                     YGGNILDMGLRDIRNSWTESVSGNKTLTRYQNLKTPYNDELAMGLQQKIGKNVIARAN
                     YVYRAAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFNLSFELAEPLHIRQVDINPQ
                     IVFSYIKSKGNLSLNNGYEESNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFT
                     HQPSGLVWANTLAWQEARKARIILGKTNAQYISEYSDYKQYVDEKLDSSLTWDTRLSW
                     TPQFLKQQNLTISADILNVLDSKTAVDTTNTGVATYASGRTFWLDVSMKF"
     gene            10448..13243
                     /locus_tag="JN125_002535"
     CDS             10448..13243
                     /locus_tag="JN125_002535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HAY8872285.1"
                     /translation="MEIIMRNLCFLLTLVATLLLPGRLIAAALPQDEKLITGQLDNGL
                     RYMIYPHAQPKDQVNLWLQIHTGSLQEEDNERGVAHFVEHMMFNGTKTWPGNKVIETF
                     ESMGLRFGRDVNAYTSYDETVYQVSLPTTQKQNLQQVMAIFSEWSNAATFEKLEVDAE
                     RGVITEEWRAHQDAKWRTSQARRPFLLANTRNLDREPIGLMDTVATVTPAQLRQFYQR
                     WYQPNNMTFIVVGDIDSKEALALIKDNLSKLPANKAAENRVWPTKAENHLRFNIINDK
                     ENRVNGIALYYRLPMVQVNDEQSFIEQAEWSMLVQLFSQRLQERIQSGELKTISGGTA
                     RSVKIAPDYQSLFFRVNARDDNMQDAANALMSELATIDQHGFSAEELDDVKSTRLTWL
                     KNAVDQQAERDLRMLTSRLASSSLNNTPFLSPEETYQLSKRLWQQITVQSLAEKWQQL
                     RKNQDAFWEQMVNNELAAKKALSPAAILALEKEYANKKLAAYIFPGRNLSLTVDADPQ
                     AEISSKETLAENLTSLTLSNGARVILAKSAGEEQKLQITAVSNKGDLSFPAQQKSLIA
                     LANKAVSGSGVGELSSSSLKRWSAENSVTMSSKVSGMNTLLSVSARTNNPEPGFQLIN
                     QRITHSTINDNIWASLQNAQIQALKTLDQRPAEKFAQQMYETRYADDRTKLLQENQIV
                     QFTAADALAADRQLFSSPADITFVIVGNVSEDKLVALITRYLGSIKHSDSPLAAGKPL
                     TRATDNASVTVKEQNEPVAQVSQWKRYDSRTPVNLATRMALDAFNVALAKDLRVNIRE
                     QASGAYSVSSRLSVDPQAKDISHLLAFTCQPERHDELLTLANEVMVKRLAKGISEQEL
                     NEYQQNVQRSLDIQQRSVQQLANTIVNSLIQYDDPAAWTEQEQLLKQMTVENVNTAVK
                     QYLSHPVNTYTGVLLPK"
     gene            13605..>13846
                     /locus_tag="JN125_002536"
     CDS             13605..>13846
                     /locus_tag="JN125_002536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate decarboxylase"
                     /protein_id="HAY8872286.1"
                     /translation="MDKKQVTDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQ
                     IINDELYLDGNARQNLATFCQTWDDENVHKLMDLSI"
BASE COUNT         3984 a         3009 c         3139 g         3714 t
ORIGIN      
        1 agcgaaaagc tcctgactca aacgtgactg gcgaactgcg caatagcata agcgggaagg
       61 gtatcgtgag cgcaaccgcc aggacagatg tagagctgga tggcgataat agccgctttg
      121 gggtgaaaac ctacctgaac agccatcacc agcgtgacga tggtaaacag cgtgagttcc
      181 agccttacat tgaagcgaat tggatcaaca acagcaaagt ctacgccgtg aagatgaatg
      241 gtcaaaccgt aggccgtgaa ggtgcgcgta atctcggtga agtacgtacc ggggttgagg
      301 cgaaagtaaa taacaacctt agcctgtggg ggaatgtcgg tgtgcaacta ggtgataaag
      361 gctatagcga tactcagggc atgctgggag tgaaatttac cttcatctgt gaaatatgaa
      421 tcagatggag gcccaggcat cgcgcggatc atggcgtttt tgatggggtc cagcgaggcg
      481 cttcgcgatc gttatgattt tatgaaattc caggtcttcc agtggttgat tggcgcaacg
      541 gatggccatg caaaaaactt ctccgtattt attcaggctg gcggcagtta tcgactcacg
      601 ccattttacg acatcatttc agcatttccg gtccttggcg gtacgggaat acacatcagc
      661 gatctcaaac tggcaatggg gcttaacgca tccaaaggca aaaaaatggc aatcgataaa
      721 atttatccgc gacatttttt ggcgacagca acggtgctga gattcccgga agtgcagatg
      781 catgaaatcc taagtgactt tgccagaatg attccggcag cactggataa cgtgaagact
      841 tcattaccga cagattttcc ggagaacgtg gtgacggcag ttgaaaccaa tgtgttgagg
      901 ttgcatggac ggttaagccg agaatacggt agtaagtgag atatggggtt tggtcattgt
      961 taatgagcaa ccatgaccgc caacgactgg attctccctt ggtttatgtt ggtgcgcata
     1021 atgtatatta tgttaaatca tatctgagtg atgcgaagtg cttttctggt agtcgttatt
     1081 cgttcagggt tccagaactt aagcctctcc tctttcataa ttggcctgtg catgacggat
     1141 ataggctggc tggtatgcag atttgccgtt tgccgcatct tcccagcgtt gaagactcaa
     1201 gctggcaaac cgcgtgcaaa tgagcacgcc ctctttccat caacacttca ggcagcttgc
     1261 gggaatgagt ccactacggt atcagaaatg ggaagtgggt gtctctctga tgcgtaatgg
     1321 aaaaatactg gctacgggag aaaatgtctc cctggggaca gtaaataaaa gcaaagtatc
     1381 tctgggttta agcgcaacct atggacaaac aggaaacaag gttgcagccg gaaccgtcca
     1441 gtcagtcatt ggtgtcactt ttatctatga ataattgtga ttttgatctt agtctatgcg
     1501 ctccattcac gaaaattgcg cggataatta ttttgtgaag gctattatcc tacacctgta
     1561 agaaaatccg cgcacaattg aagccagagt cttatttttt atattgaaaa atatgttaat
     1621 ttaaacacta tgagagatga tgcttaactt atcgtattta atctattgtt taacgataat
     1681 agattaaaaa tagaaagaga gtagtcccct actcttatat atccatgttg gcgataatcc
     1741 ctttgtatgt actgtgcatc atcgctatta caaatcctaa taattcattt ccacacagga
     1801 taagtagatg aagaaaaaaa ttgaatccta ccagggtgct gcaggtggtt ggggtgctgt
     1861 taaatccgta gcgaatgcag tacgtaagca gatggatata cgccaggatg ttattgccat
     1921 gtttgacatg aataagccag agggctttga ctgtccgggt tgtgcatggc cagatcctaa
     1981 gcacagtgcg tcattcgaca tttgtgaaaa cggcgcaaaa gcaatcgcct gggaagtcac
     2041 ggataagcag gtaaatgcct ctttctttgc tgagaatacg gttcaatcat tacttacctg
     2101 gggagatcac gagcttgagg ctgcgggacg tctcactcag cctttgaaat atgatgccgt
     2161 cagcgactgt tacaagccat taagctggca acaagctttc gacgaaattg gcgcacgcct
     2221 tcaaagctat agtgatccca atcaggttga attctatact tcgggccgca cttccaatga
     2281 agctgccttt ctttatcagc tttttgcccg tgaatacggg agcaataact ttcccgactg
     2341 ctccaacatg tgccatgaac cgaccagtgt gggtttggca gcgagtatcg gcgtgggtaa
     2401 agggactgtg ttgctggaag actttgagaa gtgcgattta gtcatttgca ttgggcataa
     2461 ccctggtaca aaccaccccc gcatgctgac ttcgttgcgc gctttagtga aacggggagc
     2521 gaaaatgatc gccatcaatc ctctacagga acgtggcctg gagcgattta ccgcaccgca
     2581 aaacccgttt gaaatgctga cgaactctga gactcagttg gccagtgcgt actacaacgt
     2641 gcgcattggt ggcgatatgg cgttgctcaa ggggatgatg cgcctgttaa ttgagcgcga
     2701 tgatgctgca agtgccgcag gtcggccctc attgcttgat gacgaattta ttcaaacgca
     2761 taccgtcggc tttgacgagc tacgccgtga cgttctcaat tccgagtgga aagatatcga
     2821 acgtatttct ggactaagtc agacacaaat cgccgaactg gctgacgcat atgccgctgc
     2881 cgatcgcacc attatctgtt acggaatggg gatcactcag cacgaacatg gtacccagaa
     2941 tgtacagcaa ctggtcaatc tgttgttgat gaaaggtaac attggcaagc ctggtgcggg
     3001 tatctgccca ctacgaggtc actctaatgt acagggcgac cgaaccgtcg gtatcaccga
     3061 gaaaccgtct gcagagtttc tggctcgcct gggtgagcgc tatggcttca ccccacctca
     3121 tgcacctgga catgctgcaa ttgccagcat gcaagcaata tgcacggggc aggctcgagc
     3181 attgatctgc atggggggca actttgcact ggcaatgcca gatcgggaag cgagcgctgt
     3241 accgttaacg caattagatt tggcggtaca cgtagccact aagcttaacc gctctcatct
     3301 gctgaccgca cggcatagct atattctgcc ggttctgggg cgtagcgaga ttgacatgca
     3361 aaaaagcggt gcgcaggcgg taaccgttga ggattcaatg tcgatgattc atgcctcgcg
     3421 tggcgtgtta aaacccgccg gtgtaatgct gaaatcagag tgtgcagtgg tcgcgggaat
     3481 cgcgcaggca gcactacccc agagcgtggt agcctgggag tatctggtgg aagattatga
     3541 tcgcattcgc aatgacattg aagctgtgtt accagagttc gccgactata accagcgcat
     3601 ccgacatcct ggaggttttc acctgataaa tgcagctgct gaaaggcgct ggatgacgcc
     3661 gtcaggtaag gctaatttca ttaccagcaa agggctgtta gaagatccct cttcagcgtt
     3721 taacagtaag ctggtcatgg cgacagtacg cagccacgat cagtacaaca cgacgattta
     3781 tggtatggat gatcgctatc gaggggtatt cggtcaacga gatgtggtct ttatgagtgc
     3841 taaacaagct aaaatttgcc gtgtaaaaaa cggcgaaaga gttaatctta ttgcgcttac
     3901 gccagacggt aagcgcagct cacgccgcat ggatagatta aaagtggtca tttaccctat
     3961 ggctgaccgc tcactggtga cctattttcc agaatcgaat cacatgctaa ctcttgataa
     4021 ccacgatcca ttaagtggca ttcctggtta taaaagtatt ccggttgaat tagaaccatc
     4081 aaattaattc gcctcctcat ttcttctgct gtcatccgca cagcagaaga atttctcatt
     4141 gactattatc gcgcaatttg ctcacattga tcaaattaaa ccacacacta taagatataa
     4201 acctctgcct acagctgtaa gaaactccgc tcagtactga agtgccagtc ctatttcctc
     4261 ttttctccag cctgttatat taagcatact gattaacgat ttttaacgtt atccgctaaa
     4321 taaacatatt tgaaatgcat gcgaccacag tgaaaaacaa aatcacgcaa agagacaact
     4381 ataaagaaat catgtctgta attgtggttg tcttattact gacccttacg ttgatagcca
     4441 ttttttcggc aattgatcag ctgggtattt cagaaatggg tcgcattgca agagatctta
     4501 cacatttcat tatcaatagt ttgcaagact gaaaataaac agcaaattat aaatatgaaa
     4561 tgttaaaaaa gtatcgataa aaactttatt gttttaagga gataaaatgt cgctcgtttg
     4621 ttctgttata tttattcatc atgccttcaa cgctaacatt ttagataaag attacgcctt
     4681 ctctgacggc gagatcctga tggtagataa cgctgttcgt acgcattttg aaccttatga
     4741 gcggcatttt aaagagatcg gatttactga aaataccatt aaaaaatatc tacaatgcac
     4801 taacatccag acagtgacgg tgcctgttcc tgcgaagttt ttacgtgctt caaatgtacc
     4861 gactggattg cttaatgaaa tgattgctta tctcaactcg gaagaacgca atcatcataa
     4921 tttttcagaa cttttgcttt tttcttgcct gtctattttt gccgcatgca aaggtttcat
     4981 tacactatta actaacggtg tgctatccgt ttccggaaaa gtgagaaata ttgtcaacat
     5041 gaagctggcg cacccatgga agctgaaaga tatttgtgac tgcctgtaca tcagtgaaag
     5101 cctgttgaag aaaaaactaa agcaagagca aacgacattc tcacagattc tattagatgc
     5161 cagaatgcag cacgcaaaaa atttgatacg cgtagaaggt tcagtcaata aaattgccga
     5221 acaatgtggt tatgccagta cttcttattt tatttatgcg ttccgcaaac atttcggcaa
     5281 cagtccgaag agagtttcta aggagtaccg ttgtcaaagt cacacgggta tgaatacggg
     5341 caacacgatg agtgctttag ctatttgatt atttgctaac tttaaaatct atcggcagta
     5401 aacatatgca atttatcgaa ttgctcgaaa ccgggacgcc gaatattgat ttcagtggtc
     5461 atagtgagaa cacattccgt atcattgatt tttctgtgcc tcccacggct tatggcaagt
     5521 ttatgtcaac catttttatg caatgggtta aaaacgatgt gggtgaaatt ttcattcgtc
     5581 agtttgaaag ctttgtcagc cgttttttgg ggaatgggca tacaagttgt attttccagg
     5641 agtcctgcaa ggataatctg gttgttgaaa gtaatggaga catttacgaa tgcgaccatt
     5701 ttgtctatcc acagtacaaa attggaaaca ttaataaatc tgaactcaaa acgatgaaca
     5761 gtgtacaact gacagcgcaa aaaaaacgga tttcagcgaa atgtcagcaa tgtgcatata
     5821 aacctatctg caatggcggt tgtcctaagc atcgtattac taaagtaaac aatgagactg
     5881 tttcttattt ttgcgaaggt tataaaatcc ttttttcaac catggtacct tatatgaacg
     5941 ccatggttga gttagctaag aacagagtac cgctttacca cattatggat gttgcaaaac
     6001 aaatggagaa taattaataa cgctctcttt taactccatt cttagcctcc ttcttatgac
     6061 cttaacaagg cacccgacat aaattcctgt cgggtgtttc gtcatcatca tcttcccttg
     6121 cgaaaatcct ggcttacgtg gtatgcgtca gggcattagc aatacccttg attatcaata
     6181 gcataaccat aaccactgaa aattaaaaat ttctatatat ttcatattgt taaatgatac
     6241 ttaaataaat ttcatcagta aatcattgcc atagataatc attggatggc acaatcaatt
     6301 ttcgctaatg ataaccattc ccattacgtt ttgtatgttg atagcaaagt atctctgtct
     6361 gctgaagccc ttttggctgc gtaagaataa taaaacttca gtgttgttaa tcattattat
     6421 cctcgcaatg atccttggcg tggttaaaat tcaggtctgg ttaaacgact ggaataatga
     6481 ttttttcaat gcgctaagcc agaaagaaac cgataagctt tggcagcttg ttctttggtt
     6541 ccctgccctg ctggggatct ttgtattaat atccgcaaac aaaacatggt taattaaact
     6601 actgactatt cgctggcgcg aatggttaac agattactac cttaatcgct ggtttgcaga
     6661 taaaaactac tacttcacgc agatctacgg cgagcataaa aatacagata accctgacca
     6721 acgtatcgct gaagacattc tcttactgat cagcaaaacg ctcagtcttt catttggctt
     6781 catccagtca cttagcatgc tgatcacctt taccgttatt ctttggcaaa gcgcgggtac
     6841 gctctcattc actgttggtg gaacagaatg gaatatccag gggtatatgg tctataccgt
     6901 cgtgctcatt gtgatcggtg gaactttatt tacccataag gttggtaagc gtattcgtcc
     6961 gcttaatgtg gaaaaacaac gtagcgaagc gacatttcga actaatcttg tgcagcataa
     7021 taagcaggca gaactgattg ctctaagcaa tgctgagtct ctacaacgcc aggagttgcg
     7081 cgacaatttt cataccatta aagagaactg gcatcgttta atgaatcgtc agcggtggct
     7141 tgattactgg caaaatattt attcgcgctc gcttagcgtt cttccctact ttctgttatt
     7201 gccgcagttt attagcgggc agatcaatct gggcggactg atgaaatcgc gccaggcatt
     7261 tatgctagta tcgaacaatt taagctggtt tatttataaa tatgacgaac ttgctgaact
     7321 ggctgcggtt atcgatcgct tgtatgagtt ccatcaactc actgaacagc gccctacgaa
     7381 taagcctaaa aattgccaac atgcggtaca agtggctaat gcgagtattc gtacgcctga
     7441 taataagatc atattagaga acttgaactt tcatgtttcg ccaggcaaat ggctattact
     7501 gaaaggctac tctggtgcgg gaaaaaccac actgcttaaa acattatccc actgctggcc
     7561 gtggtttaaa ggtgatattt tttctcctgc tgacagttgg tatgtgtcac aaacaccgtt
     7621 aatcaaaacc ggcttactga aagagattat ttgtaaagca cttcccctgc ccgtagacga
     7681 taaatcgttg agcgaagtac tgcatcaggt tggtcttggg aaattggctg cgcgtattca
     7741 tgaccacgat cgctggggag atattctttc cagcggcgaa aaacaacgta tcgccctggc
     7801 acgattaatt ttacgacgtc cgaaatggat atttcttgac gaaactacct ctcatcttga
     7861 ggaacaagag gctatccgct tactgcgttt agtgcgtgaa aaactatcca caagcggcgt
     7921 cattatggtt acacatcaac ccggtgtctg gaacctggcc gatgatattt gtgacattag
     7981 cgcggtttta taaaaacaat aaaagccctg ctgtacggag atataaataa atgaagcgag
     8041 ttcttattcc tggcgtcatt ttatgtggcg ctgatgtggc gcaggccgtc gatgacaaaa
     8101 acatgtacat gcattttttt gaagagatga cggtctatgc tcctgtccct gtacccgtaa
     8161 acggcaacac gcattacacc agtgaaagca tcgagcgttt accgaccggg aatggcaata
     8221 tcagcgatct gctgagaacc aaccctgcgg tacgcatgga ttcaacgcaa agtacctcgt
     8281 tgaaccaggg agatattcgc cctgagaaaa tctctattca cggtgcgtcg ccctaccaga
     8341 atgcctattt gattgacggt attagtgcaa ctaataacct gaacccagcg aatgagtccg
     8401 atgccagtag tgcaaccaat attagcggga tgtcacaggg gtattatctt gatgtcagct
     8461 tactggacaa tgtgacgctt tatgacagtt ttgtgccggt tgaatttggt cgcttcaatg
     8521 gcggggtaat tgatgcaaag atcaaacgct tcaacgctga tgatagcaag gtgaaattgg
     8581 gttatcgcac tacgcgttcg gactggttaa catcgcatat cgatgagaat aacaagagcg
     8641 catttaatca aggttcttca ggaagtactt atttctctcc agattttaaa aagaactttt
     8701 ataccttgtc gtttaatcag gagctggctg ataactttgg cgttaccgcc ggtttatcgc
     8761 gccgccagtc tgatatcacc cgcgcggatt atgtttcgaa tgacggcatt gtcgccggtc
     8821 gggcacagta taaaaacgtt atcgatactg cattgagcaa atttacctgg tttgccagcg
     8881 accgctttac ccacgattta accttaaaat ataccggctc cagccgtgat tataatacca
     8941 gcaccttccc gcagtctgat cgcgaaatgg gtaataaatc ctatggtctt gcatgggata
     9001 tggatacgca actcgcatgg gccaaactac gtaccaccgt tggttgggat catattagtg
     9061 attatacccg tcacgatcat gacatctggt acaccgaact ttcatgtaca tatggtgata
     9121 ttacagggcg ttgtacccgt ggcggattag gacacatttc ccaggctgta gataattaca
     9181 ccttcaaaac acgcctggac tggcaaaaat tcgccgtggg tgatgtttcg catcaaccct
     9241 actccggcgc ggaatacatc tattccgatg catggactga acgccataac cagtctgaat
     9301 cctatgtgat taatgctgca ggaaagaaaa ctaaccatac catttaccat aaaggtaaag
     9361 gcagcctagg aattgacaac tacacgctgt atatggcgga tcacattagc tggcggaatg
     9421 tgtcgttaat gcccggtgtg cgttatgact atgacaacta tctgtcaaac cacaatatct
     9481 ccccgcgctt tatgacggaa tgggatattt ttgctgatca aacctcaatg attaccgccg
     9541 gttataaccg ttactatggc gggaatattc ttgatatggg attacgtgat atccgcaata
     9601 gctggacgga atcggtatca ggtaataaaa ccctgacgcg ttatcagaat ttgaaaacgc
     9661 cttataacga tgaactggca atgggattgc agcaaaaaat cggtaagaac gttattgcac
     9721 gcgcaaacta tgtttaccgt gcagcgcatg atcaaatcag caaaagcagt cgtaccgaca
     9781 gcgcgactaa aaccaccatt actgaatata acaacgatgg caaaaccaaa acgcattcgt
     9841 ttaacctcag ttttgaactg gccgaacccc tgcatatccg ccaggtagat attaacccgc
     9901 aaattgtctt tagctatatc aagagcaagg gcaacttgtc gttaaacaat ggttatgagg
     9961 agagcaatac cggtgataac caggtcgttt ataacggtaa tctggtctct tacgatagcg
    10021 ttccagtggc agattttaat aacccattaa agatctcctt aaacatggat ttcacgcatc
    10081 aaccgagcgg gttagtgtgg gcgaatacgc tggcctggca agaagcgcgt aaagctcgca
    10141 ttatccttgg taagacaaat gcgcaataca tcagcgaata ttcagattac aagcagtatg
    10201 ttgacgaaaa actggatagc agcctgacct gggacacccg cttgtcctgg acgccacaat
    10261 ttctgaaaca acaaaacctg acgatcagtg ccgatattct caatgtactg gatagcaaaa
    10321 ccgctgttga tacaacgaat accggtgtgg cgacctacgc cagtggccgt actttctggc
    10381 ttgatgtcag catgaaattt taatagttcg gattttactt aaccggataa attcgcccgg
    10441 ttttcgcatg gagataatta tgagaaacct ctgtttctta ctgacgttag tggcaactct
    10501 gttgctcccc gggcggctga ttgccgccgc cttaccgcag gatgaaaagt taattaccgg
    10561 gcaactggac aatggcttgc gatatatgat ttatccgcat gctcaaccaa aggatcaggt
    10621 aaatttatgg ctgcaaattc ataccggttc attgcaggaa gaagacaatg agcgcggcgt
    10681 ggctcatttt gtagaacata tgatgtttaa cggcacaaaa acatggccgg gtaataaagt
    10741 catcgaaaca tttgagtcaa tgggcctgcg ttttggtcgc gatgttaatg cctataccag
    10801 ctatgacgaa acggtgtatc aggtgagttt gccgactacg cagaaacaaa atctgcaaca
    10861 agtgatggca atcttcagtg aatggagtaa tgccgcaacc tttgaaaaac tcgaagtaga
    10921 cgctgaacgt ggcgtaatta ctgaggaatg gcgtgcccat caggatgcga aatggcgcac
    10981 ctctcaggcg cgccgccctt tcctgctggc taatacccgt aatttagacc gtgaacctat
    11041 cggcctgatg gatactgtcg ccacggtcac accggcacaa ttgcgccaat tttatcaacg
    11101 ctggtatcaa ccaaataata tgacctttat cgtggtcggc gatatcgaca gtaaagaagc
    11161 gctggcgctg ataaaggata atttaagtaa gcttccggct aacaaagcag ctgaaaatcg
    11221 cgtctggccg acaaaagccg aaaaccacct gcgctttaat atcattaatg ataaagaaaa
    11281 ccgggtgaac ggcatcgcac tctattatcg cctgccaatg gtacaagtga acgatgagca
    11341 aagctttatc gaacaagctg aatggagcat gttagttcag ctgttcagtc aacgtctgca
    11401 ggaacgcata cagtcgggcg agttgaagac tatttctggc ggcactgcgc gcagcgttaa
    11461 aattgcaccc gattatcagt cgctgttttt ccgtgtaaat gcacgagacg ataatatgca
    11521 ggatgctgcg aatgcattaa tgtcagagtt ggcaaccatt gatcagcatg gtttttctgc
    11581 tgaagaactc gatgatgtca aatctacccg cctcacctgg ctgaaaaatg cggttgatca
    11641 gcaagctgaa cgtgatttac gtatgctgac cagtcgcctg gcatccagct cattaaataa
    11701 tacgccgttc ttgtcgccgg aagagacata tcaactttcg aaacgtctgt ggcagcaaat
    11761 taccgtgcaa agtctggcgg aaaaatggca gcagttaaga aagaaccagg acgcattttg
    11821 ggagcaaatg gtaaacaatg agcttgccgc caaaaaagca ttgtctcctg cggctatcct
    11881 ggcgctggaa aaagagtacg ccaacaaaaa gctggcggct tacatcttcc caggcagaaa
    11941 tttatcgtta acagtagacg ctgacccaca ggcggaaatt agcagcaaag aaacgctggc
    12001 tgagaatctg acatcattaa cactttccaa tggtgccagg gttattctgg caaaatccgc
    12061 gggtgaagag caaaagctac aaattactgc cgtatcgaat aaaggcgatt taagtttccc
    12121 tgcgcagcaa aaatcactta tcgcgctggc aaataaagca gtaagcggaa gcggcgttgg
    12181 tgagctctcc tcttccagcc tgaaacgctg gagtgcggaa aattcggtaa ccatgagcag
    12241 taaagtcagt ggcatgaata cgttgctctc cgttagcgcg cggactaata accctgaacc
    12301 tggttttcag ttgattaacc agcgaatcac ccacagcacg attaacgaca atatttgggc
    12361 atcgctacaa aatgctcaaa ttcaggcgtt gaaaacgctc gaccagcgtc cagcggagaa
    12421 attcgcccag cagatgtatg agacgcgcta tgctgatgac cgcacgaaat tactgcaaga
    12481 aaatcagatt gtacagttta ctgccgcaga tgcgctggct gccgatcgcc agttgttttc
    12541 atctccagcg gatatcacgt ttgtcattgt cggtaatgtc tcagaagaca aactcgtggc
    12601 gttaattacg cgttacttag gatcaatcaa acactctgat tcgccattag ccgcaggtaa
    12661 accattaact cgcgcgacgg acaacgcatc ggttactgta aaagaacaaa atgaacctgt
    12721 ggcacaggtt tcacagtgga agcgttatga ttcccggaca cctgttaatc tggcgacgcg
    12781 tatggcgctc gatgctttta acgtcgcact ggcaaaagat ctacgtgtta atattcgtga
    12841 acaggcatct ggagcataca gcgtttcttc tcgcctctcg gttgatcctc aggccaaaga
    12901 tatcagtcat ttgctggctt ttacttgtca accagaacga catgatgaac tgttaacgtt
    12961 agcgaatgaa gtgatggtta agcgtctggc taaagggatc agtgagcaag aactgaatga
    13021 ataccagcaa aacgttcagc gcagcctcga tatccaacag cgtagcgttc aacaattagc
    13081 gaacactatt gtaaatagtc ttattcaata tgacgatcct gcagcatgga ctgagcagga
    13141 gcaattgttg aaacaaatga cggtagagaa tgttaacact gccgttaaac aatatctttc
    13201 tcatccggta aatacttata ccggagtatt attgccaaaa taataacagc cccgtcaaca
    13261 catcgttggc ggggatttta gcaatattcg ctatttttat gtaataattt tataaatgcg
    13321 ttcaaaataa taatcaagta ctaatagtga tattttaagg tctgattttt acgtgataat
    13381 tcaggagaca cagaatgcgc ataaaaataa cagcataaaa caccttacca ccacccaaga
    13441 atttcatatt gtattgtttt tcaatgaaaa aacattattc gcgtaatatc tcacgataaa
    13501 taacattagg attttgttat ttaaacacga gtcctttgca cttgcttact ttatcgataa
    13561 atcctacttt tttaatgcga tccaatcatt ttaaggagtt taaaatggat aagaagcaag
    13621 taacggattt aaggtcggaa ctactcgatt cacgttttgg tgcgaagtct atttccacta
    13681 tcgcagaatc aaaacgtttt ccgctgcacg aaatgcgcga cgatgtcgca ttccagatta
    13741 tcaatgacga attatatctt gatggcaacg ctcgtcagaa cctggccact ttctgccaga
    13801 cctgggacga cgaaaatgtc cacaaattga tggatttatc cattaa
//
LOCUS       DADMHM010000101        13838 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.102, whole genome shotgun sequence.
ACCESSION   DADMHM010000101 DADMHM010000000
VERSION     DADMHM010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13838)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13838)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13838
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.102"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..463)
                     /gene="yddG"
                     /locus_tag="JN125_002537"
     CDS             complement(<1..463)
                     /gene="yddG"
                     /locus_tag="JN125_002537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid efflux DMT transporter YddG"
                     /protein_id="HAY8872287.1"
                     /translation="MTRQKATLIGLIAIVLWSTMVGLIRGVSEGLGPVGGAAAIYSLS
                     GLLLIFTVGFPRIRQIPKGYLLAGSLLFVSYEICLALSLGYAATRHQAIEVGMVNYLW
                     PSLTILFAILFNGQKTNWLIVPGLLLALVGVCWVLGGENGLHYDEIINNITT"
     gene            695..3742
                     /gene="fdnG"
                     /locus_tag="JN125_002538"
     CDS             695..3742
                     /gene="fdnG"
                     /locus_tag="JN125_002538"
                     /EC_number="1.17.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:1280..1282,aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit alpha"
                     /protein_id="HAY8872288.1"
                     /translation="MDVSRRQFFKICAGGMAGTTVAALGFAPKQALAQARNYKLLRAK
                     EIRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYV
                     NSENRLRYPEYRAPGSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLS
                     TGMLCASGASNETGMLTQKFARSLGMLAVDNQARVUHGPTVASLAPTFGRGAMTNHWV
                     DIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIAVDPRFTRTASVADIYAPIR
                     SGTDITFLSGVLRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYD
                     KSSWNYQFDENGYAKRDETLTHPRCVWNLLKAHVSRYTPDVVENICGTPKADFLKVCE
                     VLASTSAPDRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSN
                     IQGLTDLGLLSTSLPGYLTLPSEKQVDLQSYLEANTPKATLAGQVNYWSNYPKFFVSL
                     MKSFYGDAAQKENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDK
                     NKVVSCLSKLKYMVVIDPLVTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEEDG
                     SIANSGRWLQWHWKGQDAPGEARNDGEILAGIYHHLRELYQAEGGKGVEPLMKMSWNY
                     KQPHEPQSDEVAKENNGYALEDLYDANGVLIAKKGQLLSSFAHLRDDGTTASSCWIYT
                     GSWTEQGNQMANRDNSDPSGLGNTLGWAWAWPLNRRVLYNRASADINGKPWDPKRMLI
                     QWNGSKWTGNDIPDFGNAAPGTPTGPFIMQPEGMGRLFAINKMAEGPFPEHYEPIETP
                     LGTNPLHPNVVSNPVVRLYEQDALRMGKKEQFPYVGTTYRLTEHFHTWTKHALLNAIA
                     QPEQFVEISETLAAAKGINNGDRVTVSSKRGFIRAVAVVTRRLKPLNVNGQQVETVGI
                     PIHWGFEGVARKGYIANTLTPNVGDANSQTPEYKAFLVNIEKA"
     gene            3755..4639
                     /gene="fdxH"
                     /locus_tag="JN125_002539"
     CDS             3755..4639
                     /gene="fdxH"
                     /locus_tag="JN125_002539"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit beta"
                     /protein_id="HAY8872289.1"
                     /translation="MAMETQDIIKRSATNSITPPSQVRDYKAEVAKLIDVSTCIGCKA
                     CQVACSEWNDIRDEVGHCVGVYDNPADLSAKSWTVMRFSETEQNGKLEWLIRKDGCMH
                     CEDPGCLKACPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPFNIPRLNKEDNRVYKC
                     TLCVDRVSVGQEPACVKTCPTGAIHFGTKKEMLELAEQRVAKLKARGYEHAGVYNPDG
                     VGGTHVMYVLHHADQPELYHGLPKDPKIDTSVSLWKGALKPLAAAGFIATFAGLIFHY
                     IGIGPNKEVDDDEEDHHE"
     gene            4632..5285
                     /gene="fdnI"
                     /locus_tag="JN125_002540"
     CDS             4632..5285
                     /gene="fdnI"
                     /locus_tag="JN125_002540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit gamma"
                     /protein_id="HAY8872290.1"
                     /translation="MSKSKMIVRTKFIDRACHWTVVICFFLVALSGISFFFPTLQWLT
                     QTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHNIPDKKDIPWLLNIVEVLKGNEHK
                     VADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGI
                     ILIHAILIHMYMAFWVKGSIKGMIEGKVSRRWAKKHHPRWYREIEKAEAKKESEEGI"
     gene            complement(5336..5620)
                     /locus_tag="JN125_002541"
     CDS             complement(5336..5620)
                     /locus_tag="JN125_002541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415994.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HigA family addiction module antidote protein"
                     /protein_id="HAY8872291.1"
                     /translation="MKMANHPRPGDIIQESLDELNVSLREFARAMEIAPSTASRLLTG
                     KAALTPEMAIKLSVVIGSSPQMWLNLQNAWSLAEAEKTVDVSRLRRLVTQ"
     gene            complement(5766..6768)
                     /gene="adhP"
                     /locus_tag="JN125_002542"
                     /pseudo
     CDS             complement(5766..6768)
                     /gene="adhP"
                     /locus_tag="JN125_002542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415995.4"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase AdhP"
     gene            complement(6902..8599)
                     /locus_tag="JN125_002543"
     CDS             complement(6902..8599)
                     /locus_tag="JN125_002543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707611.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent malic enzyme"
                     /protein_id="HAY8872292.1"
                     /translation="MEPKTKKQRSLYIPYAGPVLLEFPLLNKGSAFSMEERRNFNLLG
                     LLPEVVETIEEQAERAWIQYQGFKTEIDKHIYLRNIQDTNETLFYRLVNNHLDEMMPV
                     IYTPTVGAACERFSEIYRRSRGVFISYQNRHNMDDILQNVPNHNIKVIVVTDGERILG
                     LGDQGIGGMGIPIGKLSLYTACGGISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRI
                     IDDEYYEFVDEFIQAVKQRWPDVLLQFEDFAQKNAMPLLNRYRNEICSFNDDIQGTAA
                     VTVGTLIAASRAAGGQLSEKKIVFLGAGSAGCGIAEMIIAQTQREGLSEEAARQKVFM
                     VDRFGLLTDKMPNLLPFQTKLVQKRENLSDWDTDSDVLSLLDVVRNVKPDILIGVSGQ
                     TGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFNPVV
                     WKDKIYPIAQCNNAFIFPGIGLGVIASGASRITDEMLMSASETLAQYSPLVLNGEGLV
                     LPELKDIQKVSRAIAFAVGKMAQQQGVAVKTSAEALQQAIDDNFWQAEYRDYRRTSI"
     gene            complement(8756..8893)
                     /gene="sra"
                     /locus_tag="JN125_002544"
     CDS             complement(8756..8893)
                     /gene="sra"
                     /locus_tag="JN125_002544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stationary-phase-induced ribosome-associated
                     protein"
                     /protein_id="HAY8872293.1"
                     /translation="MKSNRQARHILGLDHKISNQRKIVTEGDKSSVVNNPTGRKRPAE
                     K"
     gene            complement(8995..9210)
                     /gene="bdm"
                     /locus_tag="JN125_002545"
     CDS             complement(8995..9210)
                     /gene="bdm"
                     /locus_tag="JN125_002545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310112.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm-dependent modulation protein"
                     /protein_id="HAY8872294.1"
                     /translation="MFTYYQAENSTAEPALVNAIEQGLRAEHGVVTEDDILMELTKWV
                     EASDNDILSDIYQQTINYVVSGQHPTL"
     gene            9556..9987
                     /gene="osmC"
                     /locus_tag="JN125_002546"
     CDS             9556..9987
                     /gene="osmC"
                     /locus_tag="JN125_002546"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin OsmC"
                     /protein_id="HAY8872295.1"
                     /translation="MTIHKKGQAHWEGDIKRGKGTVSTESGVLNQQPYGFNTRFEGEK
                     GTNPEELIGAAHAACFSMALSFMLGEAGFTPTSIDTIADVSLDKVDAGFAITKIALKS
                     EVAVPGIDASTFDGIIQKAKAGCPVSQVLKAEITLDYQLKS"
     gene            complement(10043..10969)
                     /locus_tag="JN125_002547"
     CDS             complement(10043..10969)
                     /locus_tag="JN125_002547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HAY8872296.1"
                     /translation="MSDTLLTLRGVHINFPARKNWLGKTTEHVHAINGIDLQIRRGET
                     LGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRIMQMVFQDPLSSLNPRLPVWRI
                     ITEPLWIAKHSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQ
                     PDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYL
                     GQIVELGDAQQVLTAPAHPYTRLLLDSLPAIDKPLEEEWALRKTDLPGNRTLPQGCFF
                     YERCPLATSGCEVRQSLAIREDGRELRCWRAL"
     gene            complement(10962..11948)
                     /locus_tag="JN125_002548"
     CDS             complement(10962..11948)
                     /locus_tag="JN125_002548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAY8872297.1"
                     /translation="MTQPVLDIQQLHLSFPGFNGDVHALNNVSLQINRGEIVGLVGES
                     GSGKSVTAMLIMRLLPTGSYCVHRGQISLLGDDVLNAREKQLRQWRGARVAMIFQEPM
                     TALNPTRRIGLQMMDVIRHHQPISRREARAKAIVLLEEMQIPDAVEVMSRYPFELSGG
                     MRQRVMIALAFSCEPQLIIADEPTTALDVTVQLQVLRLLKHKARASGTAVLFISHDMA
                     VVSQLCDSVYVMYAGSVIESGVRADVIHHPRHPYTIGLLQCAPEHGVPRQLLPAIPGT
                     VPNLTHLPDGCAFRDRCYAAGAQCENVPALTACGDNNQRCACWYPQQEVISV"
     gene            complement(11945..12829)
                     /locus_tag="JN125_002549"
     CDS             complement(11945..12829)
                     /locus_tag="JN125_002549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D,D-dipeptide ABC transporter permease"
                     /protein_id="HAY8872298.1"
                     /translation="MMLSEETSAVRPQKQTRFNGAKLVWMLKGSPLTVTGAVIIVLML
                     LMMFFSPWLATHDPNAIDLTARLLPPSAAHWFGTDEVGRDLFSRVLVGSQQSILAGLV
                     VVAIAGMIGSLLGVLGGRADAIIMRIMDIMLSIPSLVLTMALAAALGPSLFNAMLAIA
                     IVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLISWHILRNSLPPLIVQASLDI
                     GSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFPGAAILLTAVGFNL
                     FGDGIRDLLDPKAGGKQS"
     gene            complement(12826..13309)
                     /locus_tag="JN125_002550"
                     /pseudo
     CDS             complement(12826..13309)
                     /locus_tag="JN125_002550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416003.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
     gene            complement(13311..>13838)
                     /locus_tag="JN125_002551"
     CDS             complement(13311..>13838)
                     /locus_tag="JN125_002551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HAY8872299.1"
                     /translation="TKAKAEWDKVTSKPTSLTFLYSDKDPNWEPIALATQSSLNKLDI
                     NVKLEKLANATMRDRVGKGDYDIAIGNWSPDFADPYMFMNYWFESDKKGLPGNRSFYE
                     NSEVDKLLRNALATTDQTQRTRDYQQAQKIVIDDAAYVYLFQKNYQLAMNKEVKGFVF
                     NPMLEQVFNINTMSK"
BASE COUNT         3362 a         3593 c         3578 g         3305 t
ORIGIN      
        1 tggtggtgat attattgatg atttcatcat aatgtaaccc attctcaccg cctaacaccc
       61 agcagacgcc gaccagggct aataataatc ctggtacaat cagccagttg gttttctgac
      121 cattaaacag aatggcaaag agaattgtca ggctgggcca cagatagttc accataccca
      181 cttcaatcgc ctgatgacgg gtcgccgcat accctaagga aagcgccaga cagatttcat
      241 agctgacgaa taacagactc ccggcgagta aatagccttt cggaatctgc cgaatacgcg
      301 gaaatccaac cgtgaagatt aacagcagcc cgcttaatga atagatagca gctgcgccgc
      361 cgaccgggcc gagcccctcg ctgacaccgc gaatcaatcc taccatcgtg ctccacagga
      421 cgatcgctat tagccctatg agcgttgctt tttgtcgtgt catgctcgct gttttgtctc
      481 tcttgccgtt aaaaattaag ctgaatttta tagcattttt ttaactggcc tgtcaggcag
      541 tggtgcgttt ttctaccgct attgaggtag gtcaatttgc gcaggcggat tattttgtgg
      601 caaacacgtg ttctttttga tttcgcgcaa aaagattcag aattttactg ttagtttcct
      661 cgcgcagtaa tacccctgaa aaaagaggaa agcaatggac gtcagtcgca gacaattttt
      721 taaaatctgc gcgggcggta tggctggaac aacggtagcg gcattgggct ttgcccctaa
      781 acaagcactg gctcaggcgc gaaactacaa attattacgc gctaaagaga tccgtaacac
      841 ctgcacatac tgttccgtag gttgcgggct attgatgtat agcctgggtg atggcgcgaa
      901 aaacgccaga gaagcgattt atcacattga aggtgacccg gatcatccgg taagccgtgg
      961 tgcgctgtgc ccaaaagggg ccggtttgct ggattacgtc aacagcgaaa accgtctgcg
     1021 ctacccggaa tatcgtgcgc caggttctga caaatggcag cgcattagct gggaagaagc
     1081 attctcccgt attgcaaagc tgatgaaagc tgaccgtgac gctaacttta ttgaaaagaa
     1141 cgagcagggc gtaacggtaa accgttggct ttctaccggt atgctgtgtg cctccggtgc
     1201 cagcaacgaa accgggatgc tgacacagaa atttgcccgc tccctcggga tgctggcggt
     1261 agacaaccaa gcgcgcgtct gacacggacc aacggtagca agtcttgctc caacatttgg
     1321 tcgcggtgcg atgaccaacc actgggtgga tatcaaaaac gctaacgtcg taatggtaat
     1381 gggcggtaac gctgctgaag cgcatcccgt cggtttccgc tgggcgatgg aagcgaaaaa
     1441 caacaacgat gcaaccttga tcgctgtcga tcctcgtttt acgcgtaccg cttctgtggc
     1501 ggatatttac gcacctattc gttccggtac ggacattacg ttcctgtctg gcgttttgcg
     1561 ctacctgatc gaaaacaaca aaatcaacgc cgaatacgtt aaacattaca ccaacgccag
     1621 cctgctggtg cgtgatgatt ttgctttcga agacggcctg ttcagcggct acgacgctga
     1681 aaaacgccag tatgataagt cgtcctggaa ctatcagttc gatgaaaacg gctatgcaaa
     1741 acgcgatgaa acactgactc atccgcgctg tgtgtggaac ctgctgaaag cgcacgtttc
     1801 ccgctacacg ccggacgtcg ttgaaaacat ctgcggtacg ccaaaagccg acttcctgaa
     1861 agtgtgtgaa gtgctggcct ccaccagcgc accggatcgc acaaccacct tcctgtacgc
     1921 gctgggctgg acgcagcaca ccgtgggtgc gcagaacatc cgtactatgg cgatgatcca
     1981 gttgctgctc ggtaacatgg gtatggccgg tggcggcgtg aacgcattgc gtggtcactc
     2041 caacattcag gggctgactg acttaggtct gctctctacc agcctgccag gttatctgac
     2101 gcttccgtca gaaaaacagg ttgatttgca gtcgtatctg gaagcgaaca cgccgaaagc
     2161 gacgctggct ggtcaggtga actactggag caactatccg aagttcttcg ttagcctgat
     2221 gaaatctttc tatggcgatg ccgcgcagaa agagaacaac tggggctatg actggctgcc
     2281 gaagtgggac cagacctacg acgtcatcaa gtatttcaac atgatggacg aaggcaaagt
     2341 caccggttat ttctgccagg gctttaaccc ggttgcgtcc ttcccggaca aaaacaaagt
     2401 ggtgagctgc ctgagcaagc tgaagtacat ggtggttatc gatccgctgg tgactgaaac
     2461 ctctaccttc tggcagaacc acggcgagtc gaacgatgtc gatccggcgt ctattcagac
     2521 tgaagtattc cgtctgcctt cgacctgctt tgccgaagaa gatggttcta tcgctaactc
     2581 cggtcgctgg ttgcagtggc actggaaagg tcaggacgcg ccgggcgaag cgcgtaacga
     2641 cggcgaaatt ctggcgggta tctaccatca tctgcgcgag ctgtaccagg ccgaaggtgg
     2701 taaaggcgta gaaccgctga tgaagatgag ctggaactac aagcagccgc acgaaccgca
     2761 atctgacgaa gtggctaaag agaacaacgg ctacgcgctg gaagatctct atgacgctaa
     2821 tggcgtgctt attgcgaaga aaggtcagtt gctgagtagc tttgcgcatc tgcgtgatga
     2881 cggtacaacc gcatcttctt gctggatcta caccggtagc tggacagagc agggcaacca
     2941 gatggctaac cgcgataact ccgacccgtc cggtctgggg aatacgctgg gatgggcctg
     3001 ggcgtggccg ctcaaccgtc gcgtgctgta caaccgtgct tcggcggata tcaacggtaa
     3061 accgtgggat ccgaaacgga tgctgatcca gtggaacggc agcaagtgga cgggtaacga
     3121 tattcctgac ttcggcaatg ccgcaccggg tacgccaacc gggccgttta tcatgcagcc
     3181 ggaagggatg ggacgcctgt ttgccatcaa caaaatggcg gaaggtccgt tcccggaaca
     3241 ctacgagccg attgaaacgc cgctgggcac taacccgctg catccgaacg tggtgtctaa
     3301 cccggttgtt cgtctgtatg aacaagacgc gctgcggatg ggtaaaaaag agcagttccc
     3361 gtatgtgggt acgacctatc gtctgaccga gcacttccac acctggacca agcacgcatt
     3421 gctcaacgca attgctcagc cggaacagtt tgtggaaatc agcgaaacgc tggcggcggc
     3481 gaaaggcatt aataatggcg atcgtgtcac tgtctccagc aagcgtggct ttatccgcgc
     3541 ggtggctgtg gtaacgcgtc gtctgaaacc gctgaatgta aatggtcagc aggttgaaac
     3601 ggtgggtatt ccaatccact ggggctttga gggtgtcgcg cgtaaaggtt atatcgctaa
     3661 cactctgacg ccgaatgtcg gtgatgcaaa ctcgcaaacg ccggaatata aagcgttctt
     3721 agtcaacatc gagaaggcgt aagggggcga acagatggct atggaaacgc aggacattat
     3781 caaaaggtcc gcaactaact ccatcacgcc gccttctcag gtgcgtgatt acaaagcaga
     3841 agtcgcaaaa cttatcgacg tttccacctg tatcggctgt aaagcctgtc aggtggcgtg
     3901 ttcggagtgg aacgacatcc gtgatgaagt ggggcactgc gtcggggttt acgataaccc
     3961 cgccgatctg agcgccaagt cctggacggt gatgcgcttt agcgaaaccg aacagaacgg
     4021 caagctggag tggctgatcc gtaaagacgg ctgtatgcac tgtgaagatc ccggctgcct
     4081 gaaggcgtgc ccgtctgctg gtgcaatcat tcagtacgct aacgggattg tcgatttcca
     4141 gtcggaaaac tgcatcggct gtggttactg cattgccggg tgtccgttta atattccgcg
     4201 cctcaacaaa gaggataacc gggtatataa atgcactctc tgcgtcgatc gcgtcagcgt
     4261 cggccaggaa ccggcttgtg tgaaaacctg tccgaccggg gctatccact tcggcaccaa
     4321 gaaggagatg ctggagctgg cggaacagcg cgtggcgaaa ctgaaagcgc gtggttacga
     4381 acatgctggc gtctacaacc cggatggggt cggtggtacg cacgttatgt acgtgctgca
     4441 tcacgccgat cagccggagc tgtatcacgg tctgccgaaa gatccgaaga tcgacacctc
     4501 ggtaagcctg tggaaaggcg cgttaaaacc gctggcagcg gctggcttta ttgccacttt
     4561 tgccgggttg attttccact acatcggtat tggcccgaat aaggaagtgg acgatgacga
     4621 ggaggatcat catgagtaag tcgaaaatga ttgtgcgcac caaatttatt gatcgcgcct
     4681 gtcactggac cgtggtgatt tgcttcttcc tggtggcgct gtccgggatt tcgttcttct
     4741 tcccgacgct gcaatggctg acgcaaacct tcggtacgcc gcagatggga cgcattttgc
     4801 acccgttctt cggcattgcg attttcgtcg cgctgatgtt tatgtttgtg cgttttgtgc
     4861 atcacaacat cccggataag aaagatattc cgtggctatt gaacattgtc gaagtattaa
     4921 aaggcaatga gcacaaagtg gcggatgttg gtaagtacaa cgccgggcaa aagatgatgt
     4981 tctggtcgat catgagcatg attttcgtgc tgttggtgac cggggtgatt atctggcgtc
     5041 cgtactttgc gcagtacttc ccgatgcagg ttgttcgcta cagcctgctg atccacgcgg
     5101 ctgccggtat catcctgatc cacgccatcc tgatccatat gtatatggca ttctgggtga
     5161 aaggatcgat taaagggatg atcgaaggga aggtaagccg tcgctgggcg aagaaacacc
     5221 atccgcgctg gtatcgtgaa atcgagaagg cagaagcgaa aaaagagagt gaagaaggga
     5281 tataatctct tttgaacttt aagctgaaaa tggcgcttta agaagcgcca tttttttatt
     5341 gcgtaaccag acggcgcagt cgcgacacat ccaccgtttt ttcagcctct gccagactcc
     5401 aggcgttttg cagattcagc cacatttgcg gcgaactgcc gatcaccacg gaaagtttaa
     5461 ttgccatttc tggcgtcaaa gctgcttttc cggtcagcaa tcggcttgcc gttgagggcg
     5521 caatttccat tgctctggca aactcgcgca ggctgacatt aagttcgtcc agtgattcct
     5581 gaataatgtc ccccgggcgg ggatgattgg ccattttcat tagtgtcttt actctcagta
     5641 gcgttccttc tctgggaaca ctatcattat tgttccttcc tacgcaacaa taatccattt
     5701 agccatttca tgttggagag tgtgcgatgc tgcgacccga acatgggagt cgcagcaaag
     5761 acctcttagt gacggaaatc aatcaccata cggccacgga ttttgccttc ttccatctcg
     5821 gtaaagatgg tgttgatgtc cgctaacgga cgcagggcga ctttcggcac aactttgcct
     5881 tcggcggcaa actggaaggc ttcggttaga tcctggcgcg tgccgaccag cgaaccgacc
     5941 acttcaatgc catccagcac aagacgtggg atatccaggc tcatagactc cggcggcaga
     6001 ccgacagcca caacacgacc gcctgcacgg acagcatcaa ctgccgagtt aaacgcagct
     6061 ttagctactg ctgttaccac cgcagcgtga gcgccaccgg ttttctcctg cacaatttag
     6121 gcggcgtctt cggtgcgtga gttaatcgct aaatctgcac ccatttcggt tgccagtttt
     6181 aactgctcat cattgacatc aatggcgatc actttggcgt taaagacatt cttcgcgtat
     6241 tgcagggcga ggttacccag accgccaaga ccgtagatag caatccactg accgggacga
     6301 atttttgaca gtttaacggc tttgtaggtg gtgacccccg cacaggtaat gctgttggcc
     6361 gccgccgagt ccagaccatc tggcactttt accgcgtaat cggcgaccac gatgcactct
     6421 tccgccatca acgctgtatc cggcattttt aactgaacgg cagagcgttt cgttaccact
     6481 gttacagtat tcgcaatgac cgcatccttc gtaaaaccac gccacgctgg cacgatcgcc
     6541 tagttttaat gaggtgacac ctgggccaac ttctgccacc acaccgatgc cttcatggcc
     6601 cagaattacc ccagttttgt caccaaaata gccattctta acatgaagat cggtatgaca
     6661 tacaccacaa cactccattt tcagcagggc ttcgccatgt ttcagtgagc gcagtgtttt
     6721 atccgtaacg tcaacatgat gatccttcgt aacaactgca gccttcatag ttcctccttt
     6781 tcggatgatg ttctgcatag caggtgaggc aaatgagatt tattcgccac tacccagtat
     6841 ggatgagatc tgaaaaaggg agagggaaat agcccggtag ccttcactac cgggcgcagg
     6901 cttagatgga ggtacggcgg tagtcgcggt attcggcttg ccagaaatta tcgtcaatgg
     6961 cttgttgcaa agcttcagca gacgttttca ccgccacgcc ttgctgctgc gccattttgc
     7021 caaccgcaaa cgcaattgcg cgggagactt tctgaatatc tttcagttcc ggtagtacca
     7081 gaccttcgcc gttcagcacc agcggcgaat actgagcaag cgtttcactt gctgacatca
     7141 gcatctcatc ggtgatacgt gacgcgccgg aagcaataac acccagcccg atgccaggga
     7201 aaataaaggc gttgttacac tgggcgatag ggtagatttt atctttccat accactggat
     7261 taaacgggct gccagtggcg accagcgcgt taccttcggt ccaggcgata atgtcctgcg
     7321 gtgtggcttc cacgcgtgac gtcgggttag acagcggcat cacgatcgga cgcggacagt
     7381 gtttatgcat ctcacggatg atctcttccg taaacagccc ggtctgtcct gagacgccaa
     7441 tcagaatatc tggttttaca ttgcgcacca catccagcag tgacagcaca tcgctgtcgg
     7501 tatcccagtc actgaggttt tcgcgtttct gcaccagttt ggtctggaaa ggcagcaggt
     7561 tcggcatctt gtccgtcagc aggccaaagc gatcgaccat aaagactttc tgccgcgccg
     7621 cttcctcgct taatccttcg cgctgggtct gggcgatgat catttcggca atgccgcatc
     7681 ccgctgaacc tgcaccaagg aagacgattt ttttctcgct taactgacca cctgccgctc
     7741 ggcttgctgc gatcagtgtg ccgactgtta ccgccgcagt gccctgaatg tcatcgttaa
     7801 aagaacaaat ttcattgcga tagcggttaa gtaacggcat cgcatttttt tgagcaaagt
     7861 cttcaaactg caacagcacg tctggccagc gttgtttcac agcttggata aattcatcaa
     7921 cgaattcata gtattcgtcg tcaatgatac gcggattacg ccagcccata tacagcggat
     7981 cgttaagcag ctgttggttg ttcgttccga catccagcac caccggaagg gtatacgccg
     8041 ggctgatgcc gccacaggcg gtatagagcg acagtttacc gatcggaatg cccatcccgc
     8101 cgatgccctg gtcaccaagc cccagaatac gttcaccgtc agtcaccaca atcactttga
     8161 tattatggtt cggtacgttt tgcagaatat cgtccatatt gtggcggttc tggtaagaaa
     8221 taaacacgcc gcgtgaacgg cggtagatct cagaaaaacg ctcacaggct gcgccgacgg
     8281 ttggggtata aataacaggc atcatctcat caagatgatt gtttaccaga cggtagaaga
     8341 gggtttcgtt ggtgtcctgg atgttacgca ggtagatgtg tttgtcgatt tcggttttga
     8401 atccctgata ctggatccat gctcgttccg cttgttcttc gatggtttcg accacttccg
     8461 gcagtaaccc cagcaggttg aagttacggc gttcttccat gctgaaggca ctgcctttat
     8521 tcaacaacgg aaattccagc agtacagggc cagcgtaagg gatataaagc gaacgctgtt
     8581 tttttgtttt tggttccatg tcactcactc ttttttgaat atccatccct ggcacgcttt
     8641 tatcgtcttt gctttaccgc cagggcgtcg gccccaagta taaagcagat aaaaacaaaa
     8701 acaccattgc gcaggcaatg gtgtttaatc gtcattgagg actgatggtt atgaattact
     8761 tttcagcggg gcgttttctg ccggttgggt tatttaccac gctggatttg tcaccttcgg
     8821 taactatttt gcgctggtta gaaattttat ggtccagtcc aagaatatga cgtgcctgac
     8881 ggttcgattt cattttaact cctcaatcct gttgctagtt ttaaggacaa catcgccgta
     8941 gcgaagaaac acgtgctaaa cccctaaatt aggttgccga tcaagcatag caccttaaag
     9001 cgtagggtgc tggccactga ccacataatt gatcgtttgc tggtagatat cactgaggat
     9061 gtcgttatca gaagcttcca cccatttggt cagctccatg agaatgtcat cttcagtgac
     9121 aacaccgtgc tctgcccgaa ggccttgctc aatggcatta accagagcgg gttctgctgt
     9181 tgaattttct gcctgataat aagtaaacat agtgattctc cgtgtctgtg tatttatggt
     9241 gtctgctacg gatcgcagat ttataaagca cattcagcat ggcaaatatt tgccgcttcg
     9301 ttgttaagat tagtcctggt tgatgatttt tatattttaa cctcatgata ttgataggta
     9361 ttattattgt ggtgagttga ttaatattaa tgcaatatct cttgggttat atattcccgg
     9421 ttatctattg tggaaattta atttaagtgc agaagtaata tttctgccgg atttttattc
     9481 ggaatatcct gcttatcctc gtgctgtttc tcacgtagtc tataatttcc tttttaagcc
     9541 cacatgagag caacaatgac aatccataag aaaggtcagg cacactggga aggcgatatc
     9601 aaacgcggga agggaacagt atccaccgag agtggcgtgc tgaaccaaca gccgtatgga
     9661 tttaacacgc gttttgaagg cgaaaaagga actaaccctg aagaactgat tggcgcagcg
     9721 catgccgcat gtttctcaat ggcgctttca ttcatgctgg gggaagcggg atttacgcca
     9781 acatcgattg ataccatcgc cgatgtgtcg ctggataaag tggatgccgg ttttgcgatt
     9841 acgaaaatcg cactgaagag tgaagttgcg gtgccgggta ttgatgcctc tacctttgac
     9901 ggcatcatcc agaaagcaaa agcaggatgc ccggtctctc aggtactgaa agcggaaatt
     9961 acgctggatt accagttgaa atcgtaaagc attgccggat gacgtgtcag gcgcgtgaat
    10021 gcctgatgcg ttgttagcat ctctacagcg cccgccagca ccggagctca cgtccgtcct
    10081 cccttattgc taatgattgc cggacttcac atccgctggt tgcaaggggg caacgttcgt
    10141 agaaaaaaca gccttgcggc aacgtgcggt ttcccggcag atccgtttta cgtaatgccc
    10201 attcttcctc cagcggttta tcaatggcgg ggagggaatc cagcaataat cgggtgtatg
    10261 gatgtgccgg agccgttagc acctgttgcg cgtcgcccag ttctacaatc tgcccgagat
    10321 acatcaccgc cacccgatcg ctcatatgac gtatcaccga gacattgtgt gaaatcagca
    10381 cataggtcag cccgtgattt tcctgtagcg ttaccagtaa attgaggatc tgcgcctgca
    10441 cggagatatc cagcgcagag gttggctcat caagcacaat cacgtcaggc tgcgaagaga
    10501 gtgctctggc aatggcgata cgttgccgct gcccgccgga gaacgcatga ggcaggcggt
    10561 cgagatactc cggacgaata cccacctgca cagccagctc ctctgccaac gctcgccgct
    10621 gttgttcact actatgctta gctatccaga gcggttctgt gatgatgcgc cacaccggta
    10681 agcgcggatt gagcgaagag agcgggtcct gaaacaccat ctgcataatg cgttgtgagc
    10741 cagaacggat gtactgcccg tggctcggtt gcagcatacc cattaaaagc tgtgcgaggg
    10801 tgcttttgcc gcagcctgac tcgccgacga tccctaaggt ttcaccacgg cggatctgta
    10861 aatcaatacc attaatcgca tgaacatgtt ccgtagtttt accaagccag tttttacggg
    10921 ccgggaaatt gatatggacg ccgcgtaacg ttaataacgt gtcagacact tatgacctcc
    10981 tgctgcggat accaacaggc gcagcgctgg ttgttgtcac cacacgctgt cagcgccggg
    11041 acgttttcac actgtgcacc tgccgcatag caacgatcgc gaaaagcgca gccgtcaggc
    11101 aaatgggtga ggtttggtac cgtccctgga atggcgggta atagctggcg tggtactcca
    11161 tgttctggtg cacattggag caaaccaatg gtatacggat gccggggatg atggataacg
    11221 tctgccctca cgccgctttc aattacgctt ccggcataca tcacgtaaac gctatcgcac
    11281 agttgcgaca ccacggccat atcatggctg atgaacagaa ccgcagttcc actggcgcgg
    11341 gctttatgtt taagcaaacg cagtacctgc aactgcaccg tgacgtccag cgccgtagtc
    11401 ggttcgtcgg caataatcaa ttgcggctcg caggagaatg ccagcgcaat cattacccgc
    11461 tggcgcatac cacctgaaag ctcaaacgga tagcgcgaca taacttccac ggcatccggg
    11521 atttgcatct cttccagcag gacaatcgct ttagctctgg cttcccgacg acttattggt
    11581 tgatgatggc ggatcacgtc catcatctga agacctattc gacgtgtcgg attgagggcg
    11641 gtcatcggtt cctgaaagat catcgccact cgtgcgccgc gccactgacg aagctgtttt
    11701 tcccgagcgt taagaacatc gtctcccagc agtgaaatct gcccccgatg tacgcaataa
    11761 ctgcccgtcg gtagcagacg cataatcagc attgcggtga ctgatttacc tgagccggat
    11821 tctcccacca gaccgacaat ttcaccgcgg ttaatctgca aggacacatt gttgagcgcg
    11881 tgaacatcac cgttaaaacc ggggaaactc aaatgcagct gttgaatgtc cagaacgggc
    11941 tgggtcatga ctgctttcct cctgctttcg ggtcaagcag atcgcgaata ccatcaccaa
    12001 agagattaaa cccaacggcg gtaagcaaaa tcgctgcccc cggaaatgcg caataccacc
    12061 actgatcgag tacatagttg cgaccattcg ctaccatcgc gccccattca gcactcggtt
    12121 gttgagcacc caggccaata aatcccaacg tggcggccat taaaatcgcg ctaccgatat
    12181 ccagcgatgc ctgcacgatc agcggcggca gggagttacg taaaatatgc cagctgatca
    12241 gatgccaacg cgacgcacca aaggttttcg ccgcctgaac ataggtatac tggcgtacaa
    12301 ctaatgcttg cccccgcgcc aggcgcacat aaaagggaat tcgcacaata gcaatcgcca
    12361 gcatggcgtt aaataaactc ggcccgagag cggcagccag tgccattgtc agtaccaacg
    12421 aaggaatcga cagcataatg tccatgatgc gcatgatgat ggcgtctgcg cgtccgccaa
    12481 gcacaccgag tagcgaacca atcatacccg caatggcaac cacgactaat ccggcgagaa
    12541 ttgattgctg actgccgacc agtacgcggc tgaacagatc gcgtcccact tcatcggtgc
    12601 caaaccagtg cgccgcagaa ggcggcaaaa ggcgggcggt taaatcaatg gcgttgggat
    12661 catgcgtcgc aagccacggt gaaaaaaaca tcatcaatag cattaataca atgatgactg
    12721 cgccggtcac ggtgagcgga ctgcctttca gcatccatac cagttttgca ccgttaaatc
    12781 gcgtttgttt ttgtgggcgt acggcggacg tttcctcgct tagcatcatt caccacctcc
    12841 acgtccgata cgcggatcaa tccacaaata gagcaaatcc accaccaggt tgaccagcac
    12901 ataagcaaat gaaaccacga cggcaaagcc catcactgcc gggaagtcga gcgcctgtat
    12961 tgatgttact acccatgcac ccattccggg ccaggcaaaa acggtttcgg tgagcactgc
    13021 gccatacaac aaatcgccca gcgccagacc caatacggta atcgatggga tcaacgcatt
    13081 gggtagcgca taacataaaa cgatatacca gccgggcaag ccgctggccc gggcggtacg
    13141 aatgtagtct tcactcaatt gttccagcat cgctggcgcg gtcacccgcc agtaaccgcg
    13201 ccggatcgcc agggatcaga tgcgagataa taaacgtaat cacgcagacg cccgccacca
    13261 cgagcaccag cccccagcag cgttggcgta aaatactcca gaaggtcacg ttatttactc
    13321 atggtattga tattgaagac ctgttccagc atgggattga acacaaagcc tttcacctct
    13381 ttgttcatcg ccagttggta gtttttctgg aacaggtaca cataagcagc gtcatcaatg
    13441 acgattttct gtgcctgctg gtagtcccgg gtacgctgcg tctggtcggt ggtcgcaagc
    13501 gcattgcgca gtaacttatc gacctcactg ttttcataga acgagcggtt acccggcaga
    13561 ccttttttgt ctgactcaaa ccagtaattc ataaacatat acgggtcggc aaaatctgga
    13621 ctccagttgc caatcgcaat gtcgtaatca cctttaccca ctctgtcgcg catggtggcg
    13681 ttcgccagtt tttccagctt cacattgatg tccagcttgt tgagactgga ttgtgtcgcc
    13741 agagcaatag gctcccagtt cggatcctta tcggagtaga gaaacgtcag gctggtgggt
    13801 ttgctcgtca ctttatccca ttcggctttg gctttcgt
//
LOCUS       DADMHM010000102        13811 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.103, whole genome shotgun sequence.
ACCESSION   DADMHM010000102 DADMHM010000000
VERSION     DADMHM010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13811)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13811)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13811
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.103"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..379)
                     /locus_tag="JN125_002552"
     CDS             complement(<1..379)
                     /locus_tag="JN125_002552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001683504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872300.1"
                     /translation="MNFKEKLEEHFKQFEASPVLFVGSGVSRRYLGVPCWQDLLKHFA
                     EAIEENHIKLKTKSNGDLPEYAQLLVSAYAEKWWDTEEGQLALSEKEQEKTFINEQSP
                     LKLSISKYIENAHKNIIDNDELKH"
     gene            complement(770..2038)
                     /locus_tag="JN125_002553"
     CDS             complement(770..2038)
                     /locus_tag="JN125_002553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HAY8872301.1"
                     /translation="MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRF
                     GGKQHLMAFGVYPDVSLADARKKREEARKLVAAGIDPREHKRAVKEEQAKEIITFEKV
                     AREWLVTNQKWSEEHANRVKKSLEDNIFPAIGSHNIAELGTRDLLIPIKAVEKSGRLE
                     VASRLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLQKID
                     EYTGRPLTRWATELTLLIFIRSSELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRG
                     AKMRTPHLVPLSKQALAILKQIKQFCGEHELIFIGDHDPSKPMSENTVNSALRVMGYD
                     TKVEVCGHGFRTMACSSLIESGLWSKDAVERQMSHMERNSVRAAYIHKAEHLDERKLM
                     LQWWADFLDANREKGITPFDYAKINRGNGE"
     gene            complement(2239..2323)
                     /locus_tag="JN125_002554"
     tRNA            complement(2239..2323)
                     /locus_tag="JN125_002554"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2287..2289),aa:Leu,seq:caa)
     gene            2519..3538
                     /gene="ahr"
                     /locus_tag="JN125_002555"
     CDS             2519..3538
                     /gene="ahr"
                     /locus_tag="JN125_002555"
                     /EC_number="1.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313268.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent aldehyde reductase Ahr"
                     /protein_id="HAY8872302.1"
                     /translation="MSMIKSYAAKEAGGELEVYEYDPGELRPQDVEVQVDYCGICHSD
                     LSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDAC
                     ISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKP
                     LLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVN
                     SRDPQALKALSGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLI
                     AGDRSISGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIKHVRDGKARYRVV
                     LKADF"
     gene            3668..5170
                     /locus_tag="JN125_002556"
     CDS             3668..5170
                     /locus_tag="JN125_002556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF853 domain-containing protein"
                     /protein_id="HAY8872303.1"
                     /translation="MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLA
                     ESLSEIGVPVFMADVKGDLTGIAQAGTASEKLLTRLKNIGVNDWQPHANPVVVWDIFG
                     EKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQY
                     IGDNAKSFQNQYGNISSASVGAIQRGLLSLEKQGAAHFFGEPMLDIKDWMRTDTNGKG
                     VINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAP
                     QVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAV
                     KAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTE
                     DERNGLINHSPVYGKYEDDVDRESAYEMLQKGFQASTKQQNNPPAKGKAVAVDDGILG
                     GLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR"
     gene            complement(5331..6413)
                     /gene="lptG"
                     /locus_tag="JN125_002557"
     CDS             complement(5331..6413)
                     /gene="lptG"
                     /locus_tag="JN125_002557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313266.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptG"
                     /protein_id="HAY8872304.1"
                     /translation="MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ
                     GSYDALGAGMYTLLSVPKDVQTFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQV
                     ALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNF
                     VYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPK
                     QITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMW
                     SKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYG
                     IPPIIGALLPSASFFLISLWLLMRKS"
     gene            complement(6413..7513)
                     /gene="lptF"
                     /locus_tag="JN125_002558"
     CDS             complement(6413..7513)
                     /gene="lptF"
                     /locus_tag="JN125_002558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter permease LptF"
                     /protein_id="HAY8872305.1"
                     /translation="MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIP
                     ANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAA
                     MILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF
                     IESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTAL
                     LRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTV
                     FVMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTV
                     NLIYLALAIVLNLWDTVPVRCLRASFSRKGAV"
     gene            7780..9291
                     /gene="pepA"
                     /locus_tag="JN125_002559"
     CDS             7780..9291
                     /gene="pepA"
                     /locus_tag="JN125_002559"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HAY8872306.1"
                     /translation="MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYIS
                     ALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLND
                     TGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFN
                     VPTRRELTSGERAILHGLAIAAAIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNV
                     ITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDS
                     GGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRP
                     GDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHI
                     TGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITA
                     GCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE"
     gene            9451..9894
                     /gene="holC"
                     /locus_tag="JN125_002560"
     CDS             9451..9894
                     /gene="holC"
                     /locus_tag="JN125_002560"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004098129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit chi"
                     /protein_id="HAY8872307.1"
                     /translation="MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACE
                     DEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTS
                     FADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK"
     gene            9894..12749
                     /gene="valS"
                     /locus_tag="JN125_002561"
     CDS             9894..12749
                     /gene="valS"
                     /locus_tag="JN125_002561"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000416368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HAY8872308.1"
                     /translation="MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNV
                     TGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTR
                     HDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRL
                     YKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLV
                     VATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCV
                     KITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQK
                     LERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKP
                     AVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRN
                     EEEVRKENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSG
                     FDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPL
                     DMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALAST
                     GRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFN
                     QTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLV
                     TVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTE
                     WLKQAIVAVRNIRAEMNIAPGKPLVLLLRGCSADAERRVNENRGFLQTLARLESITVL
                     PADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEG
                     FVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL"
     gene            complement(12805..>13811)
                     /locus_tag="JN125_002562"
     CDS             complement(12805..>13811)
                     /locus_tag="JN125_002562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF898 family protein"
                     /protein_id="HAY8872309.1"
                     /translation="FSYGITGGNVFFSCLVFVFFYFAILMTVSADMPLVGCVLTLSLL
                     VLLIFMAAKGLRYQALMTSLNGVRFSFNCSMKGFWWVTFFLPILMAIGMGTVFFISTK
                     MLHANSSSSVIISVVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDTA
                     YCIKYAILAFLALLPFLAVAGYIIFEQILNAYDSSVYANDDIENLQQFMEMQRKMIIA
                     QLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRSTLTYHGMLYRMCALVVISGI
                     TGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLASISRGIMPSLPFL
                     "
BASE COUNT         3509 a         3528 c         3567 g         3207 t
ORIGIN      
        1 catgttttaa ctcatcatta tctataatat ttttatgtgc attctcaata tatttagata
       61 ttgacaactt caaaggagac tgttcgttaa tgaaagtttt ctcctgttct ttttcactta
      121 atgctaattg tccttcttca gtatcccacc atttctcagc atatgcagac accaataatt
      181 gtgcatattc gggtaagtca ccattagatt ttgtttttaa ttttatatga ttttcctcaa
      241 ttgcctcagc aaaatgcttc aaaaggtctt gccaacatgg cacaccaaga taacgacgag
      301 acacaccgga gccgacaaat aacactgggg atgcttcgaa ctgcttaaaa tgctcttcga
      361 gtttttcctt aaaattcata cggatactct ctttaaaaga aatcaagccc ctttatactg
      421 attacattaa gatattgcgg cttacaccac cagtaaattg gtcaatttta cgtaagaaat
      481 ttaattattt agattcaatt aattattaga ttaactaatt gactatcact cctgatgtag
      541 ccgaattgct gtacctttgt tacgatgtag ggctcaatca agggtccact ccccttttat
      601 aagtaatcat gactttaaat ttaggcttag gtggagcatt actgccgatt aggttcaata
      661 aaaaggctta ccttagtgaa aactcggcta tttggcactg ctgaccaatt cctcgtttga
      721 ataagtcagc agctttcaat ttagaggcga atgtgcgctt ttagataact cactcgccat
      781 taccccgatt gatcttcgca tagtcaaacg gcgtaatccc cttctcccgg ttcgcatcca
      841 gaaaatcagc ccaccactgc aacatcagct tgcgctcatc cagatgttcc gctttatgga
      901 tatacgccgc cctcaccgaa ttgcgttcca tatggctcat ctgcctttcc accgcatcct
      961 tcgaccataa ccctgactca atcaatgagc tacaggccat agtgcggaag ccgtggccgc
     1021 aaacctcaac cttggtgtca tagcccatca cccgcaatgc actgttcacc gtgttttcac
     1081 tcatgggctt actcggatcg tgatcgccaa taaaaatcag ctcatgttcg ccacagaact
     1141 gttttatctg cttcaggatc gctagcgcct gctttgaaag cggcaccaga tgaggtgtac
     1201 gcatctttgc tcctcgctga gaatgtttca caccgggaat aggttctcgc tcaggcggga
     1261 tggtccacat tgacgtttca aaatcgattt ctgaccagcg agcaaaacgc agctcactgg
     1321 atcgaataaa aataagcagg gtaagttcgg ttgcccagcg ggttagtggc ctgccggtgt
     1381 attcatcgat tttctggagt aattccggga tacgctttaa ctccagcgcc ggacgatgct
     1441 gtcgattaca ggaagctacc gcccccgcca tctcttgcgc cggattgtaa tcaattaacc
     1501 cgctttgcac tgcataacgc atgatggccg tggtgcgctg ttgaaggcgg gaagccactt
     1561 caagacgtcc ggatttctcc acggctttaa taggaattaa cagatcgcgg gtgcccagtt
     1621 cagcaatatt gtgggaacca attgccggga agatattgtc ctccaggctc ttttttacac
     1681 gattagcatg ctcttccgac catttttggt tggttacgag ccactctctg gcaaccttct
     1741 cgaaagtaat aatctctttc gcctgctctt ctttcacagc acgcttatgc tcacgaggat
     1801 cgataccagc agctaccagc tttctggcct cttccctttt cttccgcgca tccgccagcg
     1861 aaacatccgg gtaaacgccg aacgccatca aatgttgttt accgccaaaa cggaaacgaa
     1921 atcgccaata ctttgaaccg ccaggtttta caagtaagga catgccgtcg ccgtcaacaa
     1981 gtgaatactc tttctcctca ggtttcgcag agcgaacttt agtatccgtt agggccataa
     2041 tggtcttcct tccattggta tctcgtgagt atacaagcaa tatcgaatcg gcaaatatac
     2101 tcattagtat actcacaagc ctgttgatgt gggttgagtc aggttgactt cagttgaggg
     2161 gaaaagctgg aaaagccttg tgtagcgcgg atttcaggca taaaaaaaga cctcagttga
     2221 ggtctattta catacttttg gtgccgaagg ccggactcga accggcacgt atttctacgg
     2281 ttgattttga atcaactgcg tctaccgatt tcgccacttc ggcactgaag aggtatgcgg
     2341 aaaacgttgt ggattatacc tgtcgcacgc caccatgcaa gcgccagctt gctcgcacct
     2401 cgctaagtgc tgaaattttc agcattgcac acagcgatgt gtaacctttg tcacactcca
     2461 ggcaccccgc cctgccatgc tctacacttc ccaaacaaca ccagagaagg accaaaaaat
     2521 gtcgatgata aaaagctatg ccgcaaaaga agcgggcggc gaactggaag tttatgagta
     2581 cgatcccggt gagctgaggc cacaagatgt tgaagtgcag gtggattatt gcgggatctg
     2641 ccattccgat ctatcgatga tcgacaatga atggggattt tcacaatatc cgctggttgc
     2701 cgggcatgag gtgattgggc gcgtggtggc actcgggagc gccgcgcagg ataaaggttt
     2761 gcaggtcggt cagcgtgtcg ggattggctg gacggcgcgt agctgtggtc actgcgacgc
     2821 ctgtattagc ggtaatcaga tcaactgcga gcaaggtgcg gtgccgacga ttatgaatcg
     2881 cggtggcttt gccgagaagt tgcgtgcgga ctggcaatgg gtgattccac tgccagaaaa
     2941 tattgatatc gagtccgccg ggccgctgtt gtgcggcggt atcacggtct ttaaaccact
     3001 gttgatgcac catatcactg ctaccagccg cgttggggta attggtattg gcgggctggg
     3061 gcatatcgct ataaaacttc tgcacgcaat gggatgcgag gtgacggcct ttagttctaa
     3121 tccggcgaaa gagcaggaag tactggcgat gggtgccgat aaagtggtga atagccgcga
     3181 tccgcaggca ctgaaagccc tgtcggggca gtttgatctc attatcaata ctgtgaacgt
     3241 cagcctcgac tggcagcctt attttgaggc gctgacctat ggcggtaatt tccatacggt
     3301 cggtgcggtt ctcacgccgc tgtctgttcc ggcctttacg ttaattgcgg gcgaccgcag
     3361 catctctggt tctgctaccg gcacgcctta tgagctgcga aagctgatgc gctttgccgc
     3421 ccgtagcaag gttgcgccga ccaccgaact gttcccgatg tcgaaaatta acgatgccat
     3481 caagcatgtg cgcgacggta aggcgcgtta ccgcgtggtt ctgaaagccg acttctgatc
     3541 actttgccgg gtgcctgtcg cccggcactt aaatctcttt ggaaggcgtc tcgcaatctg
     3601 ctgaatttag cggtgaagag tgcgcagccg ttgcctatac tccaggcagg aaactggagg
     3661 aaatctcatg agcgaacccc tattaattgc ccgcacgccg gacacagaac tttttttact
     3721 gccgggaatg gctaaccgtc acgggctgat tactggcgca acggggacgg gtaaaaccgt
     3781 tacgctgcaa aaactggcag agtcattgtc ggaaatcggc gtgccggtgt ttatggctga
     3841 tgtgaaaggc gatctgaccg gtatcgcgca ggcaggaacg gcgtcggaaa aactgctcac
     3901 aaggcttaaa aatatcggcg tcaatgactg gcaaccgcat gctaatccgg tggtggtgtg
     3961 ggatatcttt ggcgagaaag gccatccggt gcgggcgacg gtttcagacc tggggccgct
     4021 gttgctggcg cggctgttga atctcaacga tgtgcaatct ggcgtgctga atatcatctt
     4081 ccgtattgct gacgatcagg gattgttgct gctcgacttt aaagatctgc gggcgattac
     4141 ccagtacatc ggcgataacg ccaaatcttt ccagaatcag tacggtaata tcagtagcgc
     4201 atcggttggt gccatccagc gcggtttact gtcgctggaa aagcaaggtg cggcgcattt
     4261 ctttggcgag ccgatgctgg atatcaaaga ctggatgcgc accgatacca acggtaaagg
     4321 cgttatcaat atcctcagcg ccgagaagct ttatcagatg ccgaaactgt acgccgccag
     4381 cctgctgtgg atgctttcag agttgtatga acaattgccg gaagcgggcg atctggagaa
     4441 accaaaactg gtgtttttct tcgacgaggc acatctgctg tttaacgatg caccgcaggt
     4501 actgctggat aagattgagc aggtaataag gcttattcgc tcaaaaggcg tgggcgtctg
     4561 gttcgtttcg caaaacccgt ctgatattcc ggataatgtg ctcgggcagc tcggtaatcg
     4621 cgttcaacac gctttgcggg cttttacgcc caaagatcag aaagcggtaa aagctgctgc
     4681 gcaaaccatg cgggccaatc cggcgtttga taccgaaaag gcaatccagg aactggggac
     4741 cggcgaggcg ttaatctcgt ttctcgatgc aaaaggaagt ccttctgtgg tggaacgggc
     4801 gatggtgatt gcgccttgtt cgcggatggg accggtgacg gaagatgagc gcaatggctt
     4861 gattaaccac tccccggtgt atggcaagta cgaggatgac gtggaccggg aatccgccta
     4921 tgagatgttg caaaaaggct ttcaggccag taccaagcag caaaataatc ctcccgcgaa
     4981 agggaaagcg gtggcggtgg atgacggtat tcttggtgga ttgaaggata ttttgtttgg
     5041 cactaccgga ccacgcggcg ggaagaaaga tggtgtggtg caaacaatgg cgaaaagcgc
     5101 cgcccgccag gtgacgaatc agattgtacg tgggatgttg gggagtttgc tggggggaag
     5161 aagaaggtaa gtcaggcgcg atttgtcttt gcctgatgcg acgctggcgc gtcttatcat
     5221 gcctacacca ctgcaatata ttggattttc atgatttttc aggcatgaac gaagcacact
     5281 ttgctaacaa taataaaggg agctttcgct ccctttattc gttcattcgg ttacgatttt
     5341 ctcattaaca gccacaggct gattaagaag aagctggcgc ttggcaacag tgcgccgatg
     5401 atcggcggga tgccataaac caacgtcagc gggccgaaga tctggtccag tacgtagaag
     5461 acaaaaccga agctgatacc ggtgaccaca cgcacgccca tcggtacgct acgcagtggg
     5521 ccaaagatga acgacagcgc catcagcatc atcaccgcca cggatagcgg ctggaagatt
     5581 ttgctccaca tattgagctg ataacgtccg gcatcctgac cgctcgactt cagatacttc
     5641 acgtagttgt gcaaaccgct gattgagagt gcatccgggt ccagcgccac cacgcccagt
     5701 ttgtccggcg tgaggttggt tttccaggtg ccgctcaccg tctgcgaacc ggtgatctgt
     5761 ttcggattgg tcagatcaga ttcatcaacc tgcgacagac gccagacttt atgttccggg
     5821 tcaaacttcg cagtagcggc atagcgtacg gattgcagac gacgattctc gttaaaggca
     5881 taaatactga tgccacctaa ctcttcgtca cctttaaccc gctcaatgta aacgaagttg
     5941 ttgccatctt tcgcccataa gccttgctgg gtagagagca acgagccgcc gtacatcgcc
     6001 tgcgcacggt agttacgcgc catctgctcg ccctgcggcg cgacccattc accaatcgcc
     6061 atcgtcagca agaccagcgg aatggcggtt ttcatcaccg acagcgcaac ctgcatacgg
     6121 gtgaaaccag aagcctgcat caccaccagt tcgctgcgct gcgccagcat cccaagacca
     6181 agcaacgccc caagcagagc cgccatcggg aagaatgttt gcacatcttt cggcacgctc
     6241 agcaaggtat acattcctgc gcctaacgcg tcgtaactcc cctgcccggc ttttttcagc
     6301 tgatcgacaa atttgataat gcccgacagc gacaccagca tgaacagcgt catcatgatg
     6361 gtggtgaaaa tagttttacc gatatagcgg tcaagtacgc caaaaggttg catcacaccg
     6421 ctcctttacg cgaaaaactg gcgcgcaggc agcggaccgg cacggtgtcc caaaggttga
     6481 gaacaatcgc caaagccaga taaatcaggt taacggtcca catccacagc gtcgggtcca
     6541 gcttaccttt accgccgttc gatttcaggg aggtctggat caggaagaaa agtagataca
     6601 gcagcatggc tggcagcatc gatagtacgc gtccctgacg cgggttaacc acgctcagcg
     6661 gtacgaccat aagtgccatc acaaacacgg tgaataccaa cgtgatacgc cagttcagtt
     6721 ctgcgcgggc acgatcggtg tcagtgttcc acaatgtacg catgtccatc tggtcggtat
     6781 cgttcgggtc gagcgctacc gcctggtgac caatgatcgc ctgataatcc tggaagtccg
     6841 taatgcggaa atcacgtaac agtgcagtgc cttcgaagcg cgttccctgg ttgagagtga
     6901 cgacctggga gccgtcgcgc agctgggtta aatgtccgga atcggccacc accacagaag
     6961 gacgtgcatt accttttggt cgaatttgcg cgaggaacac atctttgaaa tcgctgccgt
     7021 caacgctttc gatgaacagc accgagctgc cattagtcgc ttgctggaat tgcccttgcg
     7081 ccagcgccgc catgccaggg ttcgctttcg cttctgctaa cacttcatcc tgatgacgcg
     7141 atgaccacgg tcccgcccac atcacgttaa ccgccgcgac gattgcagtg aataccgcaa
     7201 ggatcattgc cgctttcacc agaaccgctt tgctcaggcc gcaggcatgc attaccgtaa
     7261 tttcactttc ggtatacagt ttgcccagcg tcatcagcag cccgaggaac aggcttaatg
     7321 gcaggataag ctgcgccatt tccggcacgc ccaacccgag aagggagagc accagattcg
     7381 ccggaatatc gccgtcaacc gctgcgccga ggatcctcac taacttttga cagaagaaga
     7441 tcaaaagcaa gatgaagagt atcgccagct ggcttttgag cgtctcccgc accagatatc
     7501 ttatgattat cactttaaat acgcccgtaa aaactcgtct tttgcaggat tttagcttgt
     7561 ttcatggctt aaacgtcatt tattctcttg agtcgtcgaa atcgtcgcta agataattat
     7621 actcaacgga ttcacctctc agattttgtt ctgacgtgcc aatgccgtaa taacgttaag
     7681 attaacacga agtcatcgca acagcggaca tgagttacga aagcttgcaa ttctatctgt
     7741 agccaccgcc gttgtcttta agattcagga gcgtagtgca tggagtttag tgtaaaaagc
     7801 ggtagcccgg agaaacagcg gagtgcctgc atcgtcgtgg gcgtcttcga accacgtcgc
     7861 ctttctccga ttgcagaaca gctcgataaa atcagcgatg ggtacatcag cgccctgcta
     7921 cgtcggggcg aactggaagg aaaaccgggg cagacattgt tgctgcacca tgttccgaat
     7981 gtactttccg agcgaattct ccttattggt tgcggcaaag aacgtgagct ggatgagcgt
     8041 cagtacaagc aggttattca gaaaaccatt aataccctga atgatactgg ctcaatggaa
     8101 gcggtctgct ttctgactga actgcacgtt aaaggccgta acaactactg gaaagtgcgt
     8161 caggctgtcg agacggcaaa agagacgctc tacagtttcg atcagctgaa aacgaacaag
     8221 agcgaaccgc gtcgtccgct gcgtaaaatg gtgttcaacg tgccgacccg ccgtgaactg
     8281 accagcggtg agcgcgcgat cctgcacggt ctggcgattg ccgccgcgat taaagcagca
     8341 aaagatctcg gcaatatgcc gccgaatatc tgtaacgccg cttacctcgc ttcacaagcg
     8401 cgccagctgg ctgacagcta cagcaagaat gtcatcaccc gcgttatcgg cgaacagcag
     8461 atgaaagagc tggggatgca ttcctatctg gcggtcggtc agggttcgca aaacgaatcg
     8521 ctgatgtcgg tgattgagta caaaggcaac gcgtcggaag atgcacgccc aatcgtgctg
     8581 gtgggtaaag gtttaacctt cgactccggc ggtatctcga tcaagccttc agaaggcatg
     8641 gatgagatga agtacgatat gtgcggtgcg gcagcggttt acggcgtgat gcggatggtc
     8701 gcggagctac aactgccgat taacgttatc ggcgtgttgg caggctgcga aaacatgcct
     8761 ggcggacgag cctatcgtcc gggcgatgtg ttaaccacca tgtccggtca aactgttgaa
     8821 gtgctgaata ccgacgctga aggccgcctg gtactgtgcg acgtgttaac ttacgttgag
     8881 cgttttgagc cggaagcggt gattgacgtg gcgacgctga ccggtgcctg cgtgatcgcg
     8941 ctgggtcatc acattaccgg tctgatggcg aaccataatc cgctggccca tgaactgatt
     9001 gccgcgtctg aacaatccgg tgaccgcgca tggcgcttac cgctgggtga cgagtatcag
     9061 gaacagctgg agtccaattt tgccgatatg gcgaacattg gcggtcgtcc tggtggggcg
     9121 attaccgcag gttgcttcct gtcgcgcttt acccgtaagt acaactgggc gcacctggat
     9181 atcgccggaa ccgcctggcg ttctggtaaa gcaaaaggcg ccaccggtcg tccggtggcg
     9241 ttgctggcac agttcctgtt aaaccgcgct gggtttaacg gcgaagagta attgcgtcag
     9301 gcaaggctgt tattgccgga tgcggcgtga acgccttatc cgacctacac agcactgaac
     9361 tcgtaggcct gataagacac aacagcgtcg catcaggcgc tgcggtgtat acctgatgcg
     9421 tatttaaatc caccacaaga agccccatat atgaaaaacg cgacgttcta ccttctggac
     9481 aatgacacca ccgtcgatgg cttaagcgcc gttgagcaac tggtgtgtga aattgccgca
     9541 gaacgttggc gcagcggtaa gcgcgtgctc atcgcctgtg aagatgaaaa gcaggcttac
     9601 cggctggatg aagccctgtg ggcgcgtccg gcagaaagct ttgttccgca taatttagcg
     9661 ggagaaggac cgcgcggcgg tgcgccggtg gagatcgcct ggccgcaaaa acgcagcagc
     9721 agcccgcgcg atatattgat tagtctgcga acaagctttg cagattttgc caccgctttc
     9781 acagaagtgg tagacttcgt tccttatgaa gattctctga aacaactggc gcgcgaacgc
     9841 tataaagcct accgcgtggc tggtttcaac ctgaatacgg caacctggaa ataatggaaa
     9901 agacatataa cccacaagat atcgaacagc cgctttacga gcactgggaa aagcagggct
     9961 actttaagcc taatggcgat gaaagccagg aaagtttctg catcatgatc ccgccgccga
    10021 acgtcaccgg cagtttgcat atgggtcacg ccttccagca aaccatcatg gataccatga
    10081 tccgctatca gcgcatgcag ggcaaaaaca ccctgtggca ggtcggtact gaccacgccg
    10141 ggatcgctac ccagatggtc gttgagcgca agattgccgc agaagaaggt aaaacccgtc
    10201 acgactacgg ccgcgaagct ttcatcgaca aaatttggga atggaaagcg gaatccggcg
    10261 gcacgattac ccgtcagatg cgccgtctcg gcaactccgt cgactgggag cgtgaacgct
    10321 tcacgatgga cgaaggcctg tccaatgcgg tgaaagaagt tttcgttcgt ctgtataaag
    10381 aagacctgat ttaccgtggc aaacgcctgg taaactggga tccgaaactg cgcaccgcta
    10441 tctctgacct ggaagtggaa aaccgcgaat cgaaaggttc gatgtggcac atccgctatc
    10501 cgctggctga cggcgcgaaa accgcagacg gtaaagatta tctggtggtt gcgactaccc
    10561 gtccggaaac cctgttgggc gataccggcg tggccgttaa cccggaagat ccgcgttaca
    10621 aagacctgat tggcaaatat gtcattctac cgctggttaa ccgtcgtatt ccgatcgttg
    10681 gcgacgaaca cgccgacatg gaaaaaggca ccggctgcgt gaaaatcact ccggcgcacg
    10741 actttaacga ctatgaagtg ggtaaacgtc acgcgctgcc gatgatcaac atcctgacct
    10801 ttgacggcga tatccgtgaa agcgcccagg tgttcgatac caaaggtaac gaatctgacg
    10861 tttattccag cgaaatcccg gcagagttcc agaaactgga gcgttttgct gcacgtaaag
    10921 cagtcgttgc tgcggttgac gcgctcggcc tgctggaaga aattaaaccg cacgacctga
    10981 ccgtgcctta cggcgaccgt ggcggcgtag ttatcgaacc gatgctcacc gaccagtggt
    11041 acgtgcgtgc cgatgtactg gcgaaaccgg cggttgaggc ggttgagaac ggcgacattc
    11101 agttcgtacc gaagcagtac gaaaacatgt acttctcctg gatgcgcgat attcaggact
    11161 ggtgtatctc tcgtcagctg tggtggggtc accgtatccc tgcatggtac gacgaagcag
    11221 gtaacgttta tgttggccgc aacgaagaag aagtgcgcaa ggaaaataac ctcggtgccg
    11281 acgttgccct gcgtcaggac gaagacgttc tcgacacctg gttctcttct gcgctgtgga
    11341 ccttctctac cctaggctgg ccggaaaaca ccgacgcact gcgccagttc cacccaacca
    11401 gcgtgatggt atctggtttc gacatcattt tcttctggat tgcccgcatg atcatgatga
    11461 ccatgcactt catcaaagat gaaaatggca aaccgcaggt gccgttccat accgtttaca
    11521 tgaccggcct gattcgtgac gacgaaggcc agaagatgtc caaatccaag ggtaacgtta
    11581 ttgacccgct ggatatggtt gacggtattt cgctgccgga actgctggag aaacgtaccg
    11641 gcaatatgat gcagccgcag ctggcggaca aaatccgtaa gcgcaccgag aaacagttcc
    11701 cgaacggcat tgagccgcac ggcaccgatg ccctgcgctt caccctggcg gcgctggctt
    11761 ctaccggtcg tgacatcaac tgggatatga aacgcctgga aggctaccgt aacttctgta
    11821 acaagctgtg gaacgccagc cgctttgtgc tgatgaacac ggaaggtcag gattgcggct
    11881 tcaacggtgg tgaaatgacg ctgtcgctgg cggaccgctg gattctggca gagttcaacc
    11941 agaccatcaa agcgtaccgc gaagcgctgg acagcttccg cttcgatatc gctgcaggca
    12001 ttctgtatga gttcacctgg aaccagttct gcgactggta tctggagctg actaagccgg
    12061 taatgaacgg tggaaccgaa gccgaactgc gcggtactcg ccatacgctg gtgactgtac
    12121 tggaaggtct gctgcgcctc gcgcatccga tcattccgtt catcaccgaa accatctggc
    12181 agcgtgtgaa agtactttgc ggtatcactg ccgacaccat catgctgcag ccgttcccgc
    12241 agtacgatgc atctcaggtt gatgaagccg cactggctga caccgagtgg ctgaaacagg
    12301 cgatcgttgc ggtacgtaac atccgtgcag aaatgaacat cgcgccgggc aaaccgctgg
    12361 tgctgctgct gcgtggttgc agcgcggatg cagaacgtcg cgtaaatgaa aaccgtggct
    12421 tcctgcaaac cctggcgcgt ctggaaagca tcaccgtgct gcctgccgat gacaaaggtc
    12481 cggtttccgt tacgaagatc atcgacggcg cagagctgct gatcccgatg gctggcctca
    12541 tcaacaaaga agatgagctg gcgcgtctgg cgaaagaagt ggcgaagatc gaaggcgaaa
    12601 tcagccgtat cgagaacaag ctggcgaatg aaggctttgt cgcccgcgca ccggaagcgg
    12661 tcatcgcgaa agagcgtgag aagctggaag gctatgcaga agcgaaagcg aagctgattg
    12721 aacagcaggc tgttatcgcc gcgctgtaat caaaacacag tgatgaaaac gaaggccgga
    12781 gcatgctccg gcctttttta tctcttacag aaatggtaaa gaaggcataa ttccccgtga
    12841 aatactggct aagaagcctt tatctggttg ttcttcttta ttgattaaag gaaggtcatc
    12901 caaatcgccc agcaaatacg tattttttgc ctgccagtca atcatccata ttttcagcag
    12961 tggataagcc agaccgcccg taatcccgga tatcactacc aacgcacaca tgcgataaag
    13021 cataccgtgg tacgttaaag ttgagcgaaa acgaatacgc ccatcattca gtgacaggtt
    13081 gctcataaaa tgatttcgca acgacaccgt taaataactg gtgctaacag caatcccaaa
    13141 ataatagatt aactgcgcga ttatcatttt acgttgcatt tccataaatt gctgtaaatt
    13201 ctcaatatca tcatttgcat acacagaact atcatacgca tttaatattt gttcgaagat
    13261 aatataacca gcaacagcga gaaaaggtaa taaagctaaa aatgcgagga tggcatattt
    13321 tatacaatac gcagtatcta atttcacctt gaaacgatgt ataccgaaac tggtattgct
    13381 ccagagaaaa ctcattacca ggctatataa agtaccatta aaaataccaa tggaaacaat
    13441 accaactatt gccatcagaa ccacagatat aataacacta cttgaactat tggcatgtag
    13501 catctttgtc gagataaaga aaacagtccc catcccaatg gccattaaaa tcggcaagaa
    13561 aaaggttacc caccagaacc ctttcataga gcaattaaaa ctaaatctta cgccgttgag
    13621 actagtcatc aaggcctgat aacgcagtcc ttttgctgcc ataaatataa gcaaaaccaa
    13681 cagtgacaaa gtcaaaacac agccaacaag cggcatatct gctgacactg tcattaagat
    13741 tgcgaaatag aaaaaaacaa aaacaagaca actaaaaaaa acattcccac cagtaattcc
    13801 ataagaaaat c
//
LOCUS       DADMHM010000103        13603 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.104, whole genome shotgun sequence.
ACCESSION   DADMHM010000103 DADMHM010000000
VERSION     DADMHM010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13603)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13603)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13603
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.104"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(1..1860)
                     /locus_tag="JN125_002563"
                     /pseudo
     CDS             complement(1..1860)
                     /locus_tag="JN125_002563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311868.2"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine decarboxylase"
     gene            2258..2965
                     /locus_tag="JN125_002564"
     CDS             2258..2965
                     /locus_tag="JN125_002564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF554 domain-containing protein"
                     /protein_id="HAY8872310.1"
                     /translation="MVIGPFINASAVLLGGVLGALLSQRLPERIRISMTSIFGLASLG
                     IGILLVVKCANLPAMVLATLLGALIGEICLLEKGVNTAVAKAQNLFRHSRKKPTHESF
                     IQNYVAIIVLFCASGTGIFGAMNEGMTGDPSILIAKSFLDFFTAMIFACSLGIAVSVI
                     SIPLLIIQLTLAWAAALILPLTTPSMMADFSAVGGLLLLATGLRICGIKMFPVVNMLP
                     ALLLAMPLSAAWTAWFA"
     gene            3071..3146
                     /locus_tag="JN125_002565"
     tRNA            3071..3146
                     /locus_tag="JN125_002565"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3104..3106,aa:Phe,seq:gaa)
     gene            complement(3295..3831)
                     /locus_tag="JN125_002566"
     CDS             complement(3295..3831)
                     /locus_tag="JN125_002566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HAY8872311.1"
                     /translation="MLRDKFIHYFQQWRERQLSRGEHWLAQHLAGRSPREKGMLLAAV
                     VFLFSVGYYVLIWQPLSERIVQQETMLQQLVAMNTRLRSAAPDIIAARKSATTTPAQV
                     SRVISDSASAHSVVIKRIAERGENIQVWIDPVVFNDLLNWLNALDEKYALRVTQIDAS
                     AAEKTGMVNVQRLEFGRG"
     gene            complement(3833..5011)
                     /gene="gspL"
                     /locus_tag="JN125_002567"
     CDS             complement(3833..5011)
                     /gene="gspL"
                     /locus_tag="JN125_002567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000097227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspL"
                     /protein_id="HAY8872312.1"
                     /translation="MSSILEIFFPLCAADPIHWQRRTPDVEHGIWSDVANEQLQQWLQ
                     TDAIRLYIPGEWISVWQVELPDVARKQIPTILPALLEEELNQDIDELHFAPLNIDQQL
                     ATVAVIHQQHMRNIAQWLQENGITRATVAPDWMSIPCGVMAGDAQRVICRIDECRGWS
                     AGRALAPVMFRAQLNEQDLPLSLTVVGIAPEKLSAWAGADAERLTVTALPAVTTYGEP
                     EGNLLTGPWQPRVSYRKQWARWRVMILPILLILVALAVERGVTLWSVSEQVAQSRTQA
                     EEQFLTLFPEQKRIVNLRSQVTMALKKYRPQADDTRLLAELSAIASTLKSASLSDIEM
                     RGFTFDQKRQILHLQLRAANFASFDKLRSALATDYVVQQDALQKEGDAVSGGVTLRRK
                     "
     gene            complement(5008..5985)
                     /gene="gspK"
                     /locus_tag="JN125_002568"
     CDS             complement(5008..5985)
                     /gene="gspK"
                     /locus_tag="JN125_002568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001554494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspK"
                     /protein_id="HAY8872313.1"
                     /translation="MITSPPKRGMALVVVLVLLAVMMLVTITLSGRMQQQLGRTRSQQ
                     EYQQALWYSASAESLALSALSLSLKNEKRVHLAQPWASGPRFFPLPQGQIAVTLRDAQ
                     ACFNLNALAQPTTASRPLAVQQLIALISRLDVPAYRAELIAESLWEFIDEDRSVQTRL
                     GREDSEYLARSVPFYAANQPLSDISEMRVVQGMDAGLYQKLKPLVCALPMIRQQININ
                     TLDVTQSVILEALFDPWLSPVQARALLQQRPAKGWEDVDQFLAQPLLADVDERTKKQL
                     KTVLSVDSNYFWLRSDITVNEIELTMNSLIVRMGPQHFSVLWHQTGESE"
     gene            complement(5988..6587)
                     /gene="gspJ"
                     /locus_tag="JN125_002569"
     CDS             complement(5988..6587)
                     /gene="gspJ"
                     /locus_tag="JN125_002569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001255030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspJ"
                     /protein_id="HAY8872314.1"
                     /translation="MRRTRAGFTLLEMLVAIAIFASLALMAQQVTNGVTRVNSAVADH
                     DQKLNLMQQTMSFLTHDLTQMMPRPVRGDQGQREPALLAGAGVLASESEGMRFVRGGV
                     VNPLMRLPRSNLLTVGYRIHDGYLERLAWPLTDAAGSVKPTMQKLIPADSLRLQFYDG
                     TRWQESWSSVQAIPVAVRMTLHSPQWGEIERIWLLRGPQ"
     gene            complement(6584..6955)
                     /gene="gspI"
                     /locus_tag="JN125_002570"
     CDS             complement(6584..6955)
                     /gene="gspI"
                     /locus_tag="JN125_002570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001709020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspI"
                     /protein_id="HAY8872315.1"
                     /translation="MKRGFTLLEVMLVLAIFALAATAVLQIASGALSNQHVLEEKTVA
                     GWVAENQTALLYLMTREQRAVRHQGESDMAGSRWYWRTIPLNTGNALLQAVDIEVSRH
                     EDFSSVIQSRRAWFSAVGGQQ"
     gene            complement(6952..7515)
                     /gene="gspH"
                     /locus_tag="JN125_002571"
     CDS             complement(6952..7515)
                     /gene="gspH"
                     /locus_tag="JN125_002571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001394829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system minor pseudopilin GspH"
                     /protein_id="HAY8872316.1"
                     /translation="MPERGFTLLEIMLVIFLIGLASAGVVQTFATDSEPPAKKAAQDF
                     LTRFAQFNDRAVIEGQTLGVLIDPPGYQFMQRRQGQWLPVSATRLSAQVTVPKQVQML
                     LQPGSDIWQKEYALELQRRRLTLHDIELELQKEAKKKTPQIRFSPFEPATPFTLRFYS
                     AAQNACWAVKLAHDGALSLNQCDERMP"
     gene            complement(7519..7974)
                     /gene="gspG"
                     /locus_tag="JN125_002572"
     CDS             complement(7519..7974)
                     /gene="gspG"
                     /locus_tag="JN125_002572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003912123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system major pseudopilin GspG"
                     /protein_id="HAY8872317.1"
                     /translation="MNSLSRTHKPRAGFTLLEVMVVIVILGVLASLVVPNLLGNKEKA
                     DRQKAISDIVALENALDMYRLDNGRYPTTEQGLEALIQQPANMADSRNYRTGGYIKRL
                     PKDPWGNDYQYLSPGEKGLFDVYTLGADGQENGEGAGADIGNWNLQEFQ"
     gene            complement(7991..9214)
                     /gene="gspF"
                     /locus_tag="JN125_002573"
     CDS             complement(7991..9214)
                     /gene="gspF"
                     /locus_tag="JN125_002573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001173399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system inner membrane protein
                     GspF"
                     /protein_id="HAY8872318.1"
                     /translation="MALFYYQALERNGRKTKGMIEADSARHARQLLRGKELIPVHIEA
                     RMNASAGGMLQRRRHAHRRVAAADLALFTRQLAMLVQAAMPLETCLQAVSEQSEKLHV
                     KSLGMALRSRIQEGYTLSDSLREHPRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQ
                     RQRLKSRLLQAMLYPLVMLVVATGVVTILLTAVVPKIIEQFDHLGHALPSSTRALIAM
                     SDALQASGVYWLAGLLALLVLGQWLLKNPTMRLRWDKTLLRLPVTGRVARGLNTARFS
                     RTLSILTASSVPLLEGIQTAAAVSANRYVEQQLLLAADRVREGSSLRAALVELRLFPP
                     MMLYMIASGEQSGELETMLEQAAVNQEREFDTQVGLALGLFEPALVVMMAGVVLFIVI
                     AILEPMLQLNNMVGM"
     gene            complement(9214..10706)
                     /gene="gspE"
                     /locus_tag="JN125_002574"
                     /pseudo
     CDS             complement(9214..10706)
                     /gene="gspE"
                     /locus_tag="JN125_002574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001525635.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system ATPase GspE"
     gene            complement(10706..12701)
                     /gene="gspD"
                     /locus_tag="JN125_002575"
                     /pseudo
     CDS             complement(10706..12701)
                     /gene="gspD"
                     /locus_tag="JN125_002575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020234996.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system secretin GspD"
     gene            complement(12731..13573)
                     /gene="gspC"
                     /locus_tag="JN125_002576"
     CDS             complement(12731..13573)
                     /gene="gspC"
                     /locus_tag="JN125_002576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001327198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein GspC"
                     /protein_id="HAY8872319.1"
                     /translation="MVRGMFWLMLLIISAKVAHSLWRYFSFSAEYTAVSPSANKPPRA
                     DAKTFDKNDVQLISQQNWFGKYQPVATPVKQPEPVPVAETRLNVVLRGIAFGARPGAV
                     IEEGGKQQVYLQGETLGSHNAVIEEINRDHVMLRYQGKIERLSLAEEERSTVAATNKK
                     AVSDEAKQAVAEPAVSAPVEIPTAVRQALAKDPQKIFNYIQLTPVRKEGIVGYAVKPG
                     ADRSLFDASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKGARHDIS
                     IALR"
BASE COUNT         3052 a         3920 c         3506 g         3125 t
ORIGIN      
        1 tgcgcatcct gggggttcat caccactgac gggaaactct gctggcggaa catcgctttt
       61 tgtaggtctt tgacgtcgaa actgacatac agatcgtgca tctcctgaca caactggcgc
      121 aaagtgtagt cgcgatagcg caccggatat ttgttataaa cgctcggcaa cacctcagcc
      181 agcggcgagt catcctcaat atgctgttca aactgcgcca acatctctac cagttgtgcc
      241 agcttctcgt ggctttccgc cggagttaat aagaacagaa tggagttgag atcgcacttc
      301 tccggcacaa tgccgttctc acgcagatag tgcgccagaa tcgtcgccgg aacgccaaag
      361 tcgctatatt cgccggtttc ggcattgata cctggtgtag tgagtaacag cttgcacgga
      421 tcaacaaaat actgatccgc ggcatatcct tcaaagccgt gccacttcgc ccccggctca
      481 aaactgaaaa aacggcggtc gctggctaac actgatgtcg gataatcctg ccacaatttg
      541 ccatcaacaa cgggcgggat aaacgggcgg aacagcttac agcgcgcaag aatagccttg
      601 cgcgactcaa tacccaactc aacgcactca gcccacagcc gacgcccact ctccccttca
      661 tgaattttgg cgttaacatc cagtgcagca aacagcggat agaaagggct ggtagaagca
      721 tggagcataa aggcgttatt caaccgctta tgcgggcaaa aacgcgcctg tccgcggata
      781 tggttatctt ttttatggat ctgcgacgtc tgtgagaatc ccgcctgctg tttgtgcacc
      841 gactgagtca caaagatccc cggatcgttt tcgttaagtt ctaatagcag cggcgagcta
      901 tccgccatca tcgggataaa ctgttcgtaa ccgacccacg cggaatcaaa cagaatgtaa
      961 tcacacagat gcccaacggt atcgatcacc tgacgggcgt tatagacagt tccgtcatag
     1021 gttcccagct gaataatcgc caggcgaaac gggcgcggca gctcggcttt ttctggcgca
     1081 acgtcgcgaa tttgctggcg cagatactct tcattaaaac agtgcgcatc aataccgcca
     1141 atgaaaccaa acgggttgcg tgaagcttcc agatagacct gcgtcgcccc cgcctgaatc
     1201 agcgcgccgt gatgattcga cttatggttg ttacggtcga agagcaccag atcgccacgc
     1261 gttaacagcg cattcgtcac cactttattc gctgccgatg tgccgttcag cacaaaatag
     1321 gttttatcgg catgaaagac tttggctgcg aatttctgcg catctttcgc caataagcag
     1381 atcgcccaat tttacgtcag cgttacacat atcggcgcga aagacgttct caccaaagaa
     1441 atcgtaaaaa tggcgtccgg caggatgctt tttaaaaaac gcaccatgtt gatgtccagg
     1501 gcaagcaaag gtgctgttgc ccatctcaac gtactgcgtc agcgtgtcat aaaacggtgg
     1561 cagcaaattc tcttcatact gacaggctgc ggattccagc tccagccact gctgctcgtt
     1621 gccgttgatt accgccgtaa cgcccgcagg taattcaaca gcatgttcgg aatacaaaaa
     1681 caccggtaga tgaaaaccgg tgcgcttaag caacgcaaga atgccactgc gactatccgc
     1741 agcggtaatg acgactgccg cgacgtccgt aaaatcagta tctcccaacg ccaccacgcg
     1801 acgatgagaa gaaagtcggg ataccagttc actactggcg gcaatattca ttgatttcat
     1861 aagcgcaaac ccgtttcggg gaagtaagaa taccggacaa ggtggaaaac cctgccccat
     1921 gagatatggg tcaaactggt caccagctcc gaccgccaga catcagtaaa agcagaaacg
     1981 ctctgatttt actgttgtcc tgcagtgagc gtgcgttaac ttcaccgcat gagcagtaac
     2041 atagaaaggg aaacgtttcg cgcgaaacgg cgataagcga gagaatgtaa ggaggtggcg
     2101 tgcatcgggc aaactccgta cagagaggag aaaattcgcg caatcatggc acctttcgct
     2161 aaagcgtgca agccaggact ttgcgaccag acaagccatc aacaaggcaa aaagttcata
     2221 ataagaaaat caaacaatac agttaacagg aactcttgtg gtcatcggcc cttttatcaa
     2281 cgctagtgca gtcttactgg gtggcgttct cggcgcactg ctcagccaac gcttaccgga
     2341 acgtatccgc atctccatga catctatttt tggtctggca tcgctgggga ttggtatttt
     2401 actggttgtg aaatgcgcca accttccagc gatggtttta gctacgctac ttggcgctct
     2461 aattggcgaa atttgtttgc tggagaaagg tgtcaataca gcagtcgcca aagcacaaaa
     2521 tctgtttcgt cactcacgta agaagccaac gcatgaatct tttattcaga attatgtcgc
     2581 gattattgtc ctgttttgcg ccagcggcac cgggatcttc ggggcgatga acgaagggat
     2641 gaccggcgat ccgagtattt taatcgccaa gtcatttctt gatttcttta cggcgatgat
     2701 cttcgcctgc tcgctgggta ttgcggtgtc ggtaattagt atcccattac tgatcatcca
     2761 gttaacgctg gcgtgggctg ccgcgctgat attaccgctg accacaccgt cgatgatggc
     2821 agacttcagc gccgtaggcg gtttattgct gctggcaacc ggattacgca tctgtggcat
     2881 taaaatgttc ccggtggtca acatgcttcc agcactcctt ctggcaatgc cgctttccgc
     2941 cgcctggacc gcctggtttg cctgacaatg cgtgcaatag cggcaaagtg atgatagatt
     3001 gtgcagtctg cagtaaattg aagaaatttg attgacgaga cgaggcgaat caggtttaat
     3061 gcgccccgtt gcccggatag ctcagtcggt agagcagggg attgaaaatc cccgtgtcct
     3121 tggttcgatt ccgagtccgg gcaccactaa ttcttaagaa cccgcccaca aggcgggttt
     3181 ttgcttttgg atctgacaat aaccttcacg aaaaaagttt gcttataaag tctgggggaa
     3241 ttactctcgc cacgttaacg agagtaattt tattgatact aatctcctga tactttaccc
     3301 ccgtccaaac tccagccgct gcacattcac catcccagtc ttctcagcag cactggcatc
     3361 aatttgtgtc acccgcagcg catacttttc atccagcgcg tttaaccagt tcagcaggtc
     3421 attaaacacc accggatcta tccagacctg aatattctcc ccacgctcgg ctatccgctt
     3481 gatgactacc gagtgcgcgg aagcactgtc actgataacc cgcgatacct gcgcaggcgt
     3541 tgttgtggcg gattttcgcg ccgcaataat atccggcgcg gcgctcctca gtctggtgtt
     3601 catcgccacc agttgctgca acattgtctc ctgttgtact atccgttcgc tcaacggctg
     3661 ccagatgagg acgtaatatc cgacgctaaa caggaacacc accgctgcca gtaacatgcc
     3721 cttttcacgc ggagaacgcc ccgccaggtg ttgtgccagc cagtgttcgc cacggcttaa
     3781 ctggcgttca cgccattgct gaaaatagtg aataaattta tcgcgtaaca tgttatttcc
     3841 tccgcaacgt tacgccgccg gaaaccgcat caccctcttt ctgtaacgcg tcctgttgca
     3901 caacataatc ggttgccagt gcactacgca gtttgtcgaa actggcaaag ttcgcggccc
     3961 gtagctggag gtgaagtatc tggcgttttt gatcaaaggt aaaaccacgc atttcgatgt
     4021 cggaaagtga cgctgatttc agggtgctgg ctatcgctga caactcggcg agcagccggg
     4081 tatcgtcggc ctgtgggcga tattttttca gcgccatcgt cacctgagag cgtaaattca
     4141 caatccgctt ctgctccggg aacaacgtta agaactgttc ctccgcctgg gtgcggcttt
     4201 gcgccacctg ttcgctgacg ctccataacg tcacgccccg ctccactgcc agcgcaacta
     4261 gaatcagcaa tatcggcaga atcatcaccc gccagcgcgc ccactgtttt cggtagctga
     4321 cgcgaggctg ccacggccct gtcagcaggt tcccttccgg ttcgccataa gtggtaacgg
     4381 cgggcagagc tgtaacggtc aggcgttcag cgtctgcgcc agcccatgct gatagctttt
     4441 ccggtgcaat gccgactacg gttagcgaaa gcggtaaatc ctgctcattg agctgggcgc
     4501 ggaacatgac cggagccagc gcccgcccgg cgctccatcc ccggcattca tcaatgcggc
     4561 agataacccg ttgcgcatcg ccagccataa ccccacaagg aatggacatc cagtctggcg
     4621 cgacggtagc gcgggtgatg ccgttttcct gcaaccactg cgcaatgttg cgcatatgct
     4681 gttggtgaat cactgctacg gttgccagtt gctggtcgat attcaacggg gcgaaatgca
     4741 gttcatcgat atcctggttc agctcttctt ccagtaaggc gggcagaatg gtcggtatct
     4801 gcttacgggc gacatcaggc agttcaacct gccagacgct gatccattcg ccgggaatgt
     4861 agagtcgaat cgcatcggtt tgcagccatt gctggagctg ttcgttagca acgtcagacc
     4921 agataccgtg ctccacatcg ggtgtacggc gctgccaatg gatgggatca gcggcgcaaa
     4981 gcgggaaaaa aatctcaagg atggaactca ctcactttct cctgtctgat gccagagaac
     5041 cgaaaagtgt tgtgggccca tgcggacaat taacgagttc atcgtcagtt caatctcatt
     5101 cacggtgata tctgaacgca gccagaagta attgctgtcc acgctcagga cggtttttag
     5161 ctgtttttta gtacgctcat cgacgtcagc aagtagcggc tgtgcaagaa actgatcgac
     5221 atcttcccag cccttcgccg gacgttgttg taataacgcc cgcgcctgaa cggggcttaa
     5281 ccacgggtca aacagcgcct caagaatcac actttgcgtg acgtctaaag tattgatgtt
     5341 gatttgctgg cggatcatcg gcagcgcaca gaccagcggt ttcagttttt gataaagccc
     5401 ggcgtccatt ccctgtacca cgcgcatctc actgatatca gacagcggtt gattggcggc
     5461 gtagaacggc accgaacggg cgagatactc gctgtcttca cggcctagac gtgtctgcac
     5521 gctgcggtcc tcgtcaataa actcccacag gctttcggct atcagttcgg cccgataagc
     5581 aggcacatcc aggcgcgaga tcagggcaat caactgttgt accgcaagcg gacgcgacgc
     5641 cgttgtcggc tgagcaaggg cattcaggtt aaagcaagcc tgtgcgtcac gcagggtgac
     5701 cgcaatttgc ccctgcggca gagggaagaa acgagggccg gatgcccacg gctgtgccag
     5761 atgcacgcgc ttttcatttt tcaggctcag actgagcgcg ctcagcgcca ggctttccgc
     5821 actggcgctg taccacagcg cctgctggta ctcctgctgg ctgcgcgttc gcccaagttg
     5881 ttgctgcatc cgcccggaaa gcgtgatggt taccagcatc ataaccgcca gcaataccag
     5941 caccacgacc agtgccattc cgcgttttgg tggtgaggtg atcatgatta ttgcggcccg
     6001 cgtaacaacc agatgcgttc aatctcgccc cattgcggcg aatgcagggt catgcgtacc
     6061 gccacaggga tcgcctgtac tgacgaccag ctctcctgcc agcgcgtgcc gtcgtagaac
     6121 tgcaaacgga gcgaatcggc cggaatcaac ttttgcattg tcggcttcac gctgcctgcg
     6181 gcatcggtca gcggccaggc taaccgttcg agataaccgt catgaatgcg gtaaccgacg
     6241 gtgagcagat tgctgcgcgg cagacgcatc aacgggttaa ccacaccgcc gcgcacaaaa
     6301 cgcattcctt cactctcaga cgccagcacg ccagcgccag ccagtaaagc tggttcacgc
     6361 tggccctgat cgcctcttac cggacgcggc atcatttggg tcagatcgtg ggtcagaaaa
     6421 ctcatcgttt gctgcatgag gtttagtttt tgatcgtgat cggcgacggc gctattcacg
     6481 cgcgtgacgc cgttagtcac ctgctgcgcc atcagtgcca gcgaggcaaa aatggcaatt
     6541 gccaccaaca tttccagtaa cgtgaaacca gcgcgagtcc ttctcactgt tggcctccca
     6601 cggcgctaaa ccaggcgcgt cgtgactgaa tcaccgacga aaagtcttcg tgacggctga
     6661 cttcaatatc caccgcctgg agcagcgcgt tgcctgtatt caatgggatt gttcgccagt
     6721 accagcggct tcctgccata tcgctctcgc cctgatgcct gaccgcccgc tgctcacggg
     6781 tcatcaggta gagcagcgca gtctggtttt cagctaccca gcccgctacc gttttttcct
     6841 caagaacgtg ctgattactc agcgcaccgc tggcaatctg taacaccgcc gtggcagcca
     6901 gcgcaaaaat cgccagcacg agcatcactt ccagcaaggt aaatccgcgc ttcatggcat
     6961 cctctcatca cattgattga gggataacgc gccatcgtgt gccagcttta ccgcccaaca
     7021 tgcgttttgc gccgccgagt agaagcgcag cgtaaacggc gtggcgggtt caaaaggcga
     7081 aaaacggatc tgcggcgtct tctttttcgc ctctttttgc aactccagtt caatatcgtg
     7141 cagcgtcagg cgacgacgtt gcagctccag cgcatattcc ttctgccaga tatcacttcc
     7201 gggttgtaac agcatctgca cctgtttcgg caccgtaacc tgtgccgata accgggtcgc
     7261 agaaacgggc aaccactgcc cctgacgacg ctgcataaac tgatagccag gcgggtcgat
     7321 tagcacaccg agtgtctgtc cttcaatcac tgccctgtca ttaaactgcg caaagcgagt
     7381 cagaaaatcc tgtgccgctt ttttcgcggg cggttcagaa tcggtcgcaa acgtctgtac
     7441 cacgcccgca ctggcaaggc cgataaggaa aatcaccagc atgatttcca gaagtgtgaa
     7501 tccgcgttca ggcactgctt actgaaactc ctgcaaattc cagttaccga tatctgcgcc
     7561 agcgccttcc ccgttttcct gaccatccgc ccccagggta taaacatcaa acagtccttt
     7621 ttcacccggg ctgagatact gataatcatt gccccacgga tcctttggca gtcgtttgat
     7681 gtatccacca gtacggtagt tgcgggagtc cgccatattg gctggctgct ggatcagcgc
     7741 ttccagcccc tgttctgtgg tcggataacg cccgttatcc agtcggtaca tatctagtgc
     7801 gttttccagc gccacgatat cgctgatggc tttttgccga tcggctttct ctttgttgcc
     7861 caacaggtta ggcaccacca gacttgccag gacgccaaga ataacaatca ccaccatcac
     7921 ttccagcagg gtaaaacctg cccgtggttt gtgtgtgcgg gataacgaat tcatgtgata
     7981 actccgtaaa ttacattcca accatattat tcagttgcag catcggctcg aggatggcga
     8041 tgacaataaa cagcaccacg cccgccatca tcaccaccag cgcaggctca aacagcccca
     8101 acgccagccc cacctgggta tcaaattccc gttcctggtt aacagcggcc tgctcaagca
     8161 tggtttccag ttcgccgctc tgttcgccgg aagcgatcat gtacagcatc atcggcggga
     8221 acaggcgcaa ctccaccagc gcggcgcgca gactgcttcc ttcgcggacg cgatctgccg
     8281 ccagcagcag ttgttgttcg acatagcgat ttgccgacac ggcggcagcg gtctgaatgc
     8341 cttccagtag cggaacactg ctggcggtga ggatgcttaa tgtgcgggaa aaacgcgccg
     8401 tattcagccc gcgcgcaaca cggcccgtca cgggcagacg cagcaaggtt ttatcccagc
     8461 gcaggcgcat agtcggattt ttaagtagcc attgccccag caccagaagc gccagcaatc
     8521 ccgccagcca gtaaacgccg ctggcctgta acgcatcact catggcgata agcgcacggg
     8581 tggaggaggg tagcgcgtgt ccgagatgat caaactgttc gatgattttc ggcaccactg
     8641 ccgtcagcaa aatagtgacc acgcccgttg ccaccaccag cataaccagc ggatagagca
     8701 tggcctgcaa tagacgtgat ttcaggcgct gtcgctgttc ggtgtaatct gccaggcgat
     8761 tgagcaccac gtcgagatgc ccggattttt ctccggcagc gaccatcgaa caaaacaggg
     8821 aatcaaagac gcggggatgt tcgcgcaggc tgtccgacag ggtataacct tcctgaatcc
     8881 ggctgcgcag cgccattccg aggctcttca catgcagttt ttcactttgc tcactgaccg
     8941 cctgcaagca ggtttccaac ggcattgctg cctgcaccag cattgccagt tggcgcgtga
     9001 acagcgccag atctgccgcc gccacgcgac gatgtgcgtg ccgccgacgc tgcaacattc
     9061 cccctgccga tgcattcatc ctggcttcaa tgtgcacggg gataagctct ttaccgcgca
     9121 acaactggcg ggcatgacgc gcggaatccg cctcaatcat gcctttggtt ttgcgaccat
     9181 tacgctccag cgcctgatag taaaacagtg ccattacgcc tccatggtta cccgcagaac
     9241 ttcatcgaga gaggtttctc cggcgagcac tttctcaatg ccgttgctgc ggatacccgc
     9301 agagtgttgc cggacataac gttccagctc cagctccccg gcctgacggt ggatcaaatc
     9361 acgcaatgtg gcatccacca cgtcagctca tggatggcag tccgtccgcg gaaacctttg
     9421 tgattacagg cggggcagcc ctgcggatgg tacagagtga cggttcgcgc atcagtaatg
     9481 cccagcaggc gtttttcttc gtcagtggca ggcgcggcct gacggcagtc gggacacagc
     9541 gtgcggacca gtcgctgcgc catcacgccc gtcagactgg aagagagcag gaaaggctcc
     9601 acgcccatat cctgcaaacg cgtgatcgcc cccaccgccg tgttggtatg cagcgtggaa
     9661 aggaccaggt gtccggtaag cgatgcctga acagcgattt ctgcggtttc ggtatcgcgg
     9721 atttcaccga ccatcaccac atccgggtcc tgacgcaaaa tcgcgcgcag gccacgggcg
     9781 aaggtcatgc cgacgcgggt gttaacctgt gtctgaccga tcccttcaat catgtattcg
     9841 atggggtctt caaccgtgag aatgttacgc gaatggttgt tcagctcctg caatccggcg
     9901 tacagcgtgg tgcttttgcc ggaacccgtc ggccccgtca ccagaaagat gccgtgcggt
     9961 ttgtgtaaca gctggcgcaa ctgcacggtc agttgctggc taagccccag acgctccagc
    10021 gtcaggcggg cctggttttt gtccagcagt cgcagcacca cgcgctcgcc ccaggcagaa
    10081 ggcatggtgg agacacgcac gtcaatcgcc cggccgccca gcagcagcgc aatacgtcca
    10141 tcctgcggta cgcgcttttc ggcgatatcc agccgtgcca tcaccttgat acgcgatacc
    10201 agcagcgagg ccagtttgcg ccccgggcgc agcatttcat gtaatgtgcc gtcaacgcga
    10261 aaacggatca ccagactctt ttcaaacgtc tcgatgtgga tatccgaagc gccttcttta
    10321 atcgcctctg ccagcatggc gttgatcagt ttgatgatcg gcgcatcgtc gtcactttcc
    10381 agcagatctt ccgtttctgg cagttcttcc gcgagagtaa aaaagtcctc agcagaaccg
    10441 agatcttcca tcagctggcg agcctcggaa gagtcccgct gccagaccgc attcagccgc
    10501 tgttcaaatt cggcctcgtc gatttgccgc agcgtaaagg gcgcgttcag cccccgctgc
    10561 agctcctgca aaacagagag cgatagcgga tgaacgtgga ggatctccag cgacgcttcg
    10621 caccatgcca ccaggctaaa ccgacggctg aaactgtagg gcagacgcac ggtgttggcg
    10681 gtggtttcct gtgctacagg caccattaac gcgttctccc ggcattgagg aacgcgcgaa
    10741 cttccggcgg taaggcctgg ttttgcgctg gcagtaccgg ctgtgcggtg tgcggcatca
    10801 ggcttaaacc ttgctcatca cgatagatct gttcggcgcg catatagtta tatttgcgct
    10861 gcgacacgcc gtctgccgcc ataccgtcac gcagaatggt cgggcggata aacaccatca
    10921 ggttacgttt ttctttttta tccgccgtcg atttaaacag gttaccaatc aatgggatat
    10981 cgcccagcag aggcactttc gccacgcttt ctcccgcctg atcgtccatc agaccaccaa
    11041 gcacaatcag ctcaccatcg ttagccagca cggtggtttt cagtttgcgc tcaccaaaca
    11101 ccacgtcgag gctggtctgt ccttccacct tcgagacttc ctgctcaatc accatctgta
    11161 ccgcgttacc ttcgttaatc tgcggcgtga ctttcagcat gatgccgact tttttccttt
    11221 ctactgtatt gaaaggattg ctgttattgg agccaacggt agagccggtt aataccggaa
    11281 cgtcctagcc caccatgaag aaggcttcct ggttgtccag cgtagtgatg ctcggcgtgg
    11341 agagaacgtt cgagctggag tcgtttttaa ccgcctgcac cagtgccatc cagtcgcctt
    11401 tcaccacgcc aaccgccgta ccgctaaatc cagaaagaag ctgggcgagt gtggagagat
    11461 cgccgttggt atccggatta atggtggtag cgccgttttc actgatcacc gtcgagcctt
    11521 tctgcggttt cgcctgagaa atggctgccc ccagcgtacc gatagggatc tgcgtaccat
    11581 tagcaaactg cattaatccg gcatctttcg acgcccactg cacggcgaat atccagttat
    11641 tcaattacgc tttgcagcga ctgcatgatg tcctgcggcg cggttacaat cagggcatta
    11701 ctgtgtttgc tggcggcgat ggatacaacc tcacgcccgc taccgaccgt gccttccgcc
    11761 tcttctttag ccgccgtgag cgtgccgctg acctgtttca gcacatcgac cagatcttcg
    11821 gctttgctgt atttgagata gaaaacctgg ctgttgccgc tgcgttccat ttctgagtcc
    11881 agccgacgga tcaggcggcg cattttgtcc cgcgtggccg ggtcaccact gacaatcaca
    11941 ctgttggtgc gttcgtcggc gacaatttga gatttcagcg tcgcaggctg gttctcgccg
    12001 ctgtttttcg tcaggctttc cagcacgcgg gcgatttccg aagccgaggc gttatccagc
    12061 gggatcacct cttcggtgcg attacccgcg tgatccacgc gctggatcac ttccgtcagg
    12121 cgctccacaa cggaggcgcg tccggtgagc ataatcacgt tggagggatc gtaattaaca
    12181 acgttgcctg agcctgcgct gtcgatcatc tggcgcagaa tcggtgccag ctcgcgtacc
    12241 gacacattac gtaccggcac tactttggtg accatttcat cgcccgcgta gttgtcgctg
    12301 ccttcaccga ccagcggcag cggctcgact ttcgcagcgc tggatttcac caccttcagc
    12361 acgtcgtttt ccatcggtac gacggcatac ccctgtgctt ccagcaggtt aaggaatagc
    12421 tggtaatact ggcgttcatt gagcggggtc atggtgcgaa tactcacttt cccctgtacg
    12481 cccggcccca taatgatggt tttattaagg ttagcgccga cggtttcgat gaacgatttc
    12541 aggtcggtat ctttaaaatt agcggtgaaa gtggcttctt ccgcccagac cggtgaactg
    12601 cataatgccg ctgccagcac cagcggcagt aaacgctttt ttgttttgag gccagttgtc
    12661 ttcttacgcc agaccgacaa cgtaatatca cgccaaaaca cgatgaatga ttctcctgga
    12721 ttaaatgcgg ttagcgcagc gcgatggaaa tgtcgtggcg cgcacccttg cgtaaaaccg
    12781 taagttgaat ggaatccatt gaaggtaact gtcgcatcag agcaatcatt gctcgtggat
    12841 cagtgaaatc ctgctgattt agcgcaatgg cgatatcgcc ttccttgaaa ccgctggcat
    12901 cgaacagaga acgatctgcc cccggcttca ctgcataacc gacaattccc tccttacgca
    12961 caggcgtaag ctggatatag ttaaaaattt tctgcggatc tttcgccagt gcctgacgca
    13021 cggcagtcgg tatctcaact ggcgcactga cagcaggttc agcaacagct tgctttgctt
    13081 cgtcactgac agcttttttg ttggtcgcgg caacggtgga acgctcctct tcagccaagc
    13141 tcaggcgctc tatttttccc tgatagcgca gcatcacatg gtcgcgattg atttcctcaa
    13201 tcaccgcgtt gtgcgagcca agcgtttcac cctgcaaata gacctgctgt ttaccgcctt
    13261 cttcaataac cgcgccgggt ctggcaccaa aggcgatccc gcgcagcacc acattaagac
    13321 gcgtttctgc cacaggcaca ggttcgggtt gttttaccgg cgtggcgacg ggctgatatt
    13381 tgccaaacca gttttgctgg ctgattaatt gcacgtcatt tttatcgaac gtttttgcat
    13441 ccgcacgggg cggtttattc gccgatgggg aaacagccgt atattccgca gaaaaggaga
    13501 aatagcgcca gagtgaatgc gccacttttg cagaaataat aagcagcatc agccagaaca
    13561 tcccgcgtac aatttttggt aatgactcca acttactgat agt
//
LOCUS       DADMHM010000104        13533 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.105, whole genome shotgun sequence.
ACCESSION   DADMHM010000104 DADMHM010000000
VERSION     DADMHM010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13533)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13533)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13533
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.105"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(190..1563)
                     /gene="cobA"
                     /locus_tag="JN125_002577"
     CDS             complement(190..1563)
                     /gene="cobA"
                     /locus_tag="JN125_002577"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HAY8872320.1"
                     /translation="MDHLPIFCQLRDRDCLIVGGGDVAERKARLLLDAGARLTVNALA
                     FIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDTLNQRVSEAAEARRIFCNV
                     VDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLARLLREKLESLLPLHLGQVAKYAGQ
                     LRGRVKQQFTTMSERRRFWEKLFVNDRLAQSLANNDQKAITETTEQLINEPLDHRGEV
                     VLVGAGPGDAGLLTLKGLQQIQQADVVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHC
                     VPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCNAGIPFSVVPGITAAS
                     GCSAYSGIPLTHRDYAQSVRLITGHLKTGGELDWENLAAEKQTLVFYMGLNQAATIQQ
                     KLIEHGMPGEMPVAIVENGTAVTQRVIDGTLTQLGELAQQMNSPSLIIIGRVVGLRDK
                     LNWFSNH"
     gene            complement(1582..2388)
                     /gene="nirC"
                     /locus_tag="JN125_002578"
     CDS             complement(1582..2388)
                     /gene="nirC"
                     /locus_tag="JN125_002578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026212.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite transporter NirC"
                     /protein_id="HAY8872321.1"
                     /translation="MFTDTINKCAANAARIARLSANNPLGFWVSSAMAGAYVGLGIIL
                     IFTLGNLLDPSVRPLVMGATFGIALTLVIIAGSELFTGHTMFLTFGVKAGSISHGQMW
                     AILPQTWLGNLVGSVFVAMLYSWGGGSLLPVDTSIVHSVALAKTTAPAMVLFFKGALC
                     NWLVCLAIWMALRTEGAAKFIAIWWCLLAFIASGYEHSIANMTLFALSWFGNHSEAYT
                     LAGIGHNLLWVTLGNTLSGAVFMGLGYWYATPKSNRPVADKFNQTETAAG"
     gene            complement(2515..2841)
                     /gene="nirD"
                     /locus_tag="JN125_002579"
     CDS             complement(2515..2841)
                     /gene="nirD"
                     /locus_tag="JN125_002579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite reductase small subunit NirD"
                     /protein_id="HAY8872322.1"
                     /translation="MSQWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISN
                     IDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYEARVKDG
                     VVQLRG"
     gene            complement(2838..5381)
                     /locus_tag="JN125_002580"
     CDS             complement(2838..5381)
                     /locus_tag="JN125_002580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709140.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite reductase large subunit"
                     /protein_id="HAY8872323.1"
                     /translation="MSKVRLAIIGNGMVGHRFIEDLLDKSDAANFDITVFCEEPRIAY
                     DRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFY
                     DKLIMATGSYPWIPPIKGSDTQDCFVYRTIEDLNAIESCARRSKRGAVVGGGLLGLEA
                     AGALKNLGIETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGV
                     EARKTMRFADGSELEVDFIVFSTGIRPRDKLATQCGLDVAPRGGIVINDSCQTSDPDI
                     YAIGECASWNNRVFGLVAPGYKMAQVAVDHILGSENAFEGADLSAKLKLLGVDVGGIG
                     DAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIE
                     LPENPDSLILPAHSGSGKPSIGVDKLPDSAQICSCFDVTKGDLIAAINKGCHTVAALK
                     AETKAGTGCGGCIPLVTQVLNAELAKQGIEVNNNLCEHFAYSRQELFHLIRVEGIKTF
                     EELLAKHGKGYGCEVCKPTVGSLLASCWNEYILKPEHTPLQDSNDNFLANIQKDGTYS
                     VIPRSPGGEITPEGLMAVGRIAREFNLYTKITGSQRLAMFGAQKDDLPEIWRQLIEAG
                     FETGHAYAKALRMAKTCVGSTWCRYGVGDSVGLGVELENRYKGIRTPHKMKFGVSGCT
                     RECSEAQGKDVGIIATEKGWNLYVCGNGGMKPRHADLLAADIDRETLIKYLDRFMMFY
                     IRTADKLTRTAPWLENLEGGIDYLKAVIIDDKLGLNAHLEEEMARLREAVVCEWTETV
                     NTPSAQTRFKHFINSDKRDPNVQMVPEREQHRPATPYERIPVTLVEDNA"
     gene            complement(5643..6824)
                     /gene="tsgA"
                     /locus_tag="JN125_002581"
     CDS             complement(5643..6824)
                     /gene="tsgA"
                     /locus_tag="JN125_002581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter TsgA"
                     /protein_id="HAY8872324.1"
                     /translation="MTNSNRIKLTWISFLSYALTGALVIVTGMVMGNIADYFNLPVSS
                     MSNTFTFLNAGILISIFLNAWLMEIVPLKTQLRFGFLLMVLAVAGLMFSHSLALFSTA
                     MFILGVVSGITMSIGTFLITQMYEGRQRGSRLLFTDSFFSMAGMIFPMIAAFLLAHSI
                     EWYWVYACIGLVYVAIFILTFGCEFPALGKHAPKTDAPVEKEKWGIGVLFLSVAALCY
                     ILGQLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTV
                     LAGLAAILMYVFNTGTPAHMAWSILALGFFSSAIYTTIITLGSQQTKVPSPKLVNFVL
                     TCGTIGTMLTFVVTGPIVEHSGPQAALLTANGLYAVVFVMCFLLGFVSRHRQHNTLTS
                     H"
     gene            7095..7667
                     /gene="ppiA"
                     /locus_tag="JN125_002582"
                     /gene_synonym="rotA"
     CDS             7095..7667
                     /gene="ppiA"
                     /locus_tag="JN125_002582"
                     /gene_synonym="rotA"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000920493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase A"
                     /protein_id="HAY8872325.1"
                     /translation="MFKSTLAAMAAVFALSALSPAAMAAKGDPHVLLTTSAGNIELEL
                     DKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKNEAD
                     NGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVAD
                     KISQVPTHDVGPYQNVPSKPVVILSAKVLP"
     gene            7772..7939
                     /locus_tag="JN125_002583"
     CDS             7772..7939
                     /locus_tag="JN125_002583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhfG family protein"
                     /protein_id="HAY8872326.1"
                     /translation="MKKLTDKQKSRLWELQRNRNFQASRRLEGVEMPLVTLTVAEALA
                     RLVELRRHYER"
     gene            7929..8531
                     /locus_tag="JN125_002584"
     CDS             7929..8531
                     /locus_tag="JN125_002584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative adenosine monophosphate-protein
                     transferase Fic"
                     /protein_id="HAY8872327.1"
                     /translation="MSDKFGEGRDPYLYPGLDIMRNRLNIRQQQRLEQAAYEMTALRA
                     ATIELGPLVRGLPHLRTIHRQLYQDIFDWAGQLREVDIYQGDTPFCHFAYIEKEGNAL
                     MQDLEEEGYLVGLEKTKFVERLAHYYCEINVLHPFRVGSGLAQRIFFEQLAIHAGYQL
                     SWQGIEKEAWNQANQSGAMGDLTALQMIFSKVVSEAGESE"
     gene            8563..9126
                     /gene="pabA"
                     /locus_tag="JN125_002585"
     CDS             8563..9126
                     /gene="pabA"
                     /locus_tag="JN125_002585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component 2"
                     /protein_id="HAY8872328.1"
                     /translation="MILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKP
                     QKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCLGHQAMAQAFGGKVVRAAKVMHG
                     KTSPITHNGEGVFRGLANPLTVTRYHSLVVEPGSLPACFDVTAWSETREIMGIRHRQW
                     DLEGVQFHPESILSEQGHQLLANFLHL"
     gene            9212..10432
                     /gene="argD/dapC"
                     /locus_tag="JN125_002586"
     CDS             9212..10432
                     /gene="argD/dapC"
                     /locus_tag="JN125_002586"
                     /EC_number="2.6.1.11"
                     /EC_number="2.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     acetylornithine/succinyldiaminopimelate transaminase"
                     /protein_id="HAY8872329.1"
                     /translation="MAIEQTAITRATFDEMILPIYAPAEFIPVKGQGSRIWDQQGKEY
                     VDFAGGIAVTALGHCHPALVNALKTQGETLWHISNVFTNEPALRLGRKLIEATFAERV
                     VFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDG
                     FGPKPADIIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVTASTPEFLQGLRELCDQ
                     HQALLVFDEVQCGMGRTGDLFAYMYYGVTPDILTSAKALGGGFPISAMLTTAEIASAF
                     HPGSHGSTYGGNPLACAVAGAAFDIINTPEVLEGIQAKRQRFVDHLQKIDQQYDVFSD
                     IRGMGLLIGAELKPHYKGRARDFLYAGAEVGVMVLNAGPDVMRLAPSLVVEDADIDEG
                     MQRFAHAVAKVVGA"
     gene            complement(10499..12589)
                     /locus_tag="JN125_002587"
     CDS             complement(10499..12589)
                     /locus_tag="JN125_002587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312236.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872330.1"
                     /translation="MWRRLIYHPDINYALRQTLVLCLPVAVGLMLGELRFGLLFSLVP
                     ACCNIAGLDTPHKRFFKRLIIGASLFATCSLLTQLLLAKDVPLPFLLTGLTLVLGVTA
                     ELGPLHAKLLPASLLAAIFTLSLAGYMPVWEPLLIYALGTLWYGLFNWFWFWIWREQP
                     LRESLSLLYRELADYCEAKYSLLTQHTDPEKALPPLLVRQQKAVDLITQCYQQMHMLS
                     AQNNTDYKRMLRIFQEALDLQEHISVSLHQPEEVQKLVERSHAEEVIRWNAQTVAARL
                     RVLADDILYHRLPTRFTMEKQIGALEKIARQHPDNPVGQFCYWHFSRIARVLRTQKPL
                     YARDLLADKQRRMPLLPALKSYLSLKSPALRNAGRLSVMLSVASLMGTALHLPKSYWI
                     LMTVLLVTQNGYGATRLRIVNRSVGTVVGLIIAGVALHFKIPEGYTLTLMLITTLASY
                     LILRKNYGWATVGFTITAVYTLQLLWLNGEQYILPRLIDTIIGCLIAFGGTVWLWPQW
                     QSGLLRKNAHDALEAYQEAIRLILSEDPQPTPLAWQRMRVNQAHNTLYNSLNQAMQEP
                     AFNSHYLADMKLWVTHSQFIVEHINAMTTLAREHRALPPELAQEYLQSCEIAIQRCQQ
                     RLEYDEPGSSGDANIMDAPEMQPHEGAAGTLEQHLQRVIGHLNTMHTISSMAWRQRPH
                     HGIWLSRKLRDSKA"
     gene            complement(12640..13272)
                     /gene="crp"
                     /locus_tag="JN125_002588"
     CDS             complement(12640..13272)
                     /gene="crp"
                     /locus_tag="JN125_002588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cAMP-activated global transcriptional regulator
                     CRP"
                     /protein_id="HAY8872331.1"
                     /translation="MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIV
                     KGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKK
                     FRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
                     PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR"
BASE COUNT         3269 a         3492 c         3551 g         3221 t
ORIGIN      
        1 agactgctcg ttaagaacga tacaggaata tttaattggc gtcagtgagc gaatgactta
       61 attttgtaag tcgctgtaac ggtgaatata acccattagc agataatatt tattaagggg
      121 ttatgtttta tttgctgaat atataaaaag agtcattaag aaggccagaa ttctctggcc
      181 cgggttaaat taatggttgg agaaccagtt cagtttatcg cgcaggccaa caacccgacc
      241 aataataatt agcgatggac tgttcatttg ctgagcaagt tcaccgagtt gcgtgagcgt
      301 accgtcaatc acgcgctgcg tgactgccgt tccgttttcg acaattgcca ccggcatttc
      361 gccaggcata ccgtgttcaa tcagcttttg ctgaatagtc gcggcctgat tcaaccccat
      421 atagaacacc agcgtctgtt tttctgccgc caggttttcc cagtccagct cgccaccggt
      481 ttttaagtgt ccggtaatta agcgtacgct ctgggcataa tcgcgatgcg tgagtggaat
      541 acccgaatag gcagagcaac cagaagctgc ggtaataccc ggaaccaccg agaacggaat
      601 acccgcgttg cacagtgttt ccagctcttc gccaccacgg ccaaaaataa acggatcgcc
      661 acctttcagc cgcaccacgc gtttgccttt ttgcgcttcc cgcagcagga tctggttaat
      721 ctcttcctgc ggtacacagt ggtatcccgc gcgtttgccg acgaaaacgc gatcagcatc
      781 gcggcgtacc agattcataa tatcgtcaga aaccagacgg tcgtagacca ccacatctgc
      841 ctgctgaatt tgttgcagtc ctttcagcgt cagcagcccg gcatcgcccg gacctgcacc
      901 aaccagcacc acttcaccgc gatggtcgag cggttcgttg attaactgtt cggtcgtttc
      961 agtaatggct ttctgatcgt tgtttgccag cgactgcgct aggcggtcgt taacgaacaa
     1021 tttctcccag aaacggcgac gctcactcat cgtggtgaac tgttgtttca ctcgcccgcg
     1081 taattgcccg gcatatttcg ccacctggcc cagatgcaac ggcagcagtg attcgagttt
     1141 ttcgcgcaac aggcgcgcca gaaccggaga ggtgccgcca gaggagaccg ctaccattag
     1201 cggtgagcgg tcaataatcg acggcataat aaagctggcg gctttcggcg catcgactac
     1261 gttacagaag atgcgacgag cttcagcggc ttcgctgacg cgctggttaa gcgtgtcatc
     1321 atccgtcgct gcaatcgcca gccagcaggt gtcgagaagg ctttcatcaa atggcccttc
     1381 gacgagggtt aacatgcctg catctgccca tgcggtgaac tgtggaataa acgctaatgc
     1441 attcaccgtt aagcgagcgc ctgcgtctaa cagcaacctt gctttgcgtt ccgcgacatc
     1501 accaccgccg acaatcagac agtcgcgatc gcgtaattgg caaaatatag gcaaatgatc
     1561 cacgtaaaaa ccccttagta attaaccggc agccgtttca gtttgattaa atttgtccgc
     1621 aaccggacga ttcgatttcg gcgtagcata ccaataaccc aatcccatga atacggcacc
     1681 tgataaagta ttacccagcg tcacccacag caggttatga ccaatacccg ccagcgtgta
     1741 ggcttcgctg tggttgccga accaggagag cgcgaacagc gtcatgttag cgatagagtg
     1801 ctcgtagccg gacgcgataa atgccagcag acaccaccag atagcgataa atttcgccgc
     1861 cccttcagtg cgcagcgcca tccagattgc caggcaaacc agccagttac acaatgcacc
     1921 tttgaagaag agtaccattg ccggtgcagt ggttttagcc agcgcgacgg agtgaacgat
     1981 gctggtatct accggcagca ggctaccgcc gccccagcta tagagcatgg caacgaagac
     2041 ggaaccgacc aggttaccca gccaggtttg cggcaggatt gcccacattt gcccgtggct
     2101 gatgctgccc gcttttaccc caaaggtgag gaacatggtg tgtccggtga acagttcaga
     2161 accggcgata atcaccagcg ttaaggcgat accaaaggtc gcgcccatca ccagcggacg
     2221 tacggacggg tcgagcaaat taccgagcgt gaaaatcaag atgatcccaa gacccacata
     2281 cgcgcccgcc atggcggagc tgacccaaaa gccgagcggg ttatttgccg acaggcgtgc
     2341 aatgcgcgca gcgttagccg cacacttatt aatagtgtct gtaaacattt gattatcctt
     2401 taaaaaataa aaacaaaaaa ataaaacaaa aagtttaaaa aatgtcctgc aatataccga
     2461 aggtcattac aggaccatgc aaaaagggga ggcattgcgc ctcccgttaa aacattaacc
     2521 gcgcagctgc accacgccgt ctttcactcg tgcttcgtaa tgtttgacgg aaaactgttc
     2581 gtcttccatg cacaagccat cacttaagcg aaaacgctgt tttttcagcg ggctggcgac
     2641 ccacagctcg ccctggtgtt ccgcaatcag cccgcgtgac agcacgctgg actcgaagaa
     2701 cggatcgatg ttgctgatcg caaacacctg gtcgctgtga tacgggcgga aaatcgcgac
     2761 ctgctcgtcg cctaacagcg cgcagacgcc ggtttcaggc aggatgtcat cgattttgca
     2821 gatgtctttc cactggctca tgcgttgtcc tccaccagag ttaccgggat acgttcatac
     2881 ggcgttgccg gacggtgctg ttcgcgctct ggcaccatct gcacgttcgg gtcacgcttg
     2941 tcgctgttga tgaagtgttt gaagcgagtc tgcgcggacg gtgtattgac cgtttcagtc
     3001 cactcacaca ctaccgcttc acgcaggcgc gccatctctt cttctagatg agcgttcagc
     3061 cccagtttgt cgtcaatgat caccgctttc aggtaatcga tgccgccttc gaggttttct
     3121 aaccacggcg cggtacgcgt cagtttgtcg gcggtacgga tgtagaacat catgaagcgg
     3181 tcgagatatt tgatcagcgt ttcgcgatcg atatccgctg ccagcagatc cgcatgacgc
     3241 ggtttcatgc cgccgttgcc gcaaacatac aggttccagc ctttttcagt ggcgataata
     3301 cccacgtctt taccctgagc ttctgaacat tcacgggtac agccggagac accgaacttc
     3361 attttgtgcg gcgtacggat gcctttgtag cggttttcca gttccacgcc gaggccgacg
     3421 ctgtcgccaa cgccgtagcg gcaccaggtg ctacccacgc aggttttcgc catacgcagt
     3481 gctttcgcat aggcatgacc ggtttcgaag ccggcttcaa tcagctgacg ccagatctct
     3541 ggcagatcgt ctttctgtgc gccaaacatc gccaggcgct gggaaccggt gattttggtg
     3601 tagagattaa attcacgcgc gatacgaccc actgccatca gcccttccgg ggtgatttca
     3661 ccgcccggag aacgcgggat caccgagtag gtcccgtctt tctggatgtt agcgaggaag
     3721 ttgtcgttag aatcttgcag cggagtatgt tctggcttca gaatgtattc gttccagcag
     3781 gaggccagca gcgaaccgac ggtcggttta caaacttcac aaccgtagcc tttgccgtgt
     3841 ttcgccagca gttcttcgaa ggttttaatg ccttcaacgc ggatcaaatg gaacagttcc
     3901 tgacgcgaat aagcaaagtg ttcgcacagg ttgttgttaa cttcgatgcc ctgtttcgcc
     3961 agttccgcgt tcagtacctg agtgaccagc gggatacagc caccgcagcc agtacccgct
     4021 ttggtttcag ctttcagcgc cgcaactgtg tggcagcctt tgttgatggc agcaatcaga
     4081 tcacctttag tgacgtcgaa gcaggagcag atttgcgcgc tgtccggcag tttatcaaca
     4141 ccgatagacg gcttaccgct acccgagtgc gccggcagaa tcagagaatc cgggttttcc
     4201 ggcagctcga tagcattcag caccagttgc agcaagttac cgtagtcgct ggtatcgccc
     4261 accagtaccg caccgagcag ggttttgttg tcttcgctga cgatcaggcg tttgtagatc
     4321 tctttgcttt cgtcgaggta aacgtagcta cgtgcgccag gcgtgcgacc atgagcatca
     4381 ccaataccgc ctacgtccac gcccagcagt ttcagcttgg cgctaaggtc agcaccttca
     4441 aaggcgtttt cgctaccgag aatatggtca acggcgacct gcgccatttt gtagccaggt
     4501 gctaccagac caaatacacg gttgttccag cttgcgcatt caccgatagc gtagatatcc
     4561 ggatcggaag tttggcagga atcattaatg acgatacccc cacgcggagc aacgtccaga
     4621 ccacactggg ttgccagctt atcgcgcgga cggataccgg tagagaagac gataaagtcg
     4681 acttccagtt cgctgccgtc ggcaaaacgc atggttttac gtgcttcgac accttcctgc
     4741 acaatctcaa gggtgttttt gctggtgtga acgcgcacgc ccatactttc gattttgcga
     4801 cgcagctgct cgccacccat ctgatcaagc tgttccgcca tcagcatagg ggcaaattcg
     4861 ataacgtggg tttcaatacc taagtttttc agcgcgccag cggcttccag acctaacagg
     4921 ccgccaccaa caacggcacc gcgtttgctg cgacgggcgc aggattcaat ggcgttgagg
     4981 tcttcaatgg tgcgatagac aaagcagtcc tgagtatcag aacctttgat tggtgggatc
     5041 cacgggtagg aaccggttgc catgatcagc ttgtcataaa aaacggtacg tccggcgctg
     5101 gagtgaatca ccttctcctg acggttgatg gtgatagcgc gttcgccgac cagaactttg
     5161 atgccgtgtt tctcgtagaa gccttcgcgc accagcgaca gctcttcggc ggtgtggtga
     5221 gagaagtaag acgagaggtg tacgcggtca taagcgatgc gcggttcttc acagaaaacg
     5281 gtaatatcaa agttggccgc atcagattta tcaagaagat cttcgataaa gcgatggccg
     5341 accataccgt taccgataat tgcgagtctg actttgctca tttttgcctc gatttctttt
     5401 ctattaccgc ctaccttaac gattcagcaa ccccgcttat tgatgtaaat caaattcacc
     5461 tttatatacc ccttaagggg catattgctg atttgtataa attttcttaa gtcacggaat
     5521 tgtctgacat ttcatgtttg tgcaaaaaat agacaaaatg aacgggttta tagaaataga
     5581 tgcacgtagc ggggttagag aggaaaaggc cggacgacga tagtgccgtc cggcattagc
     5641 aattaatgag aggtcagggt gttatgctga cggtgacggc tgacgaaacc taacaggaag
     5701 cacatcacaa agacgacagc gtacagaccg tttgctgtaa gcagtgccgc ctgcggaccg
     5761 ctatgttcaa caatcgggcc ggtaaccaca aaggtcaaca tagtaccgat ggttccgcag
     5821 gtcaggacaa agttaaccag ttttggcgac ggtactttgg tctgctgtga acccagggtg
     5881 atgatggtgg tatagatcgc gctggagaag aagcccagag cgagaattga ccacgccata
     5941 tgtgctggtg ttccggtgtt aaagacgtac atcagaatcg cagccagacc agccagtacg
     6001 gtcagaatgc gttgcaaatc aaagaagcga agaataaagc tgaacgccca catgccgacc
     6061 atgtatgaca tccagaagtt actcaccagc gtgcccgcgt cgttcaggct catgcccagg
     6121 cctttggcat actcaggcac ccaggagata aaacctaact gaccgaggat gtagcacagc
     6181 gccgcaacag agagaaacag tacgccgatc ccccactttt ctttctctac cggagcatcc
     6241 gtttttggtg catgtttgcc cagtgctggg aactcacagc cgaaggtcag aataaaaata
     6301 gcgacataca ccagcccgat gcaggcataa acccagtacc actcaatgct gtgcgccagt
     6361 agaaacgcgg cgatcattgg gaaaatcatc ccagccatac tgaagaagga gtcagtaaat
     6421 aacaggcggg aaccgcgctg acgcccttca tacatttgtg ttatcaggaa tgtaccaatc
     6481 gacatagtaa tgccgctgac caccccgaga atgaacatcg ccgtcgagaa cagcgccagg
     6541 ctgtggctga acatcaaacc ggcaaccgcc agcaccatca ggagaaagcc aaaacgtaac
     6601 tgcgttttca acgggacgat ttccatcagc caggcgttga ggaagataga gattaaaatg
     6661 ccggcgttga ggaaggtgaa ggtgttactc atactggaaa caggcagatt gaaataatcg
     6721 gcgatatttc ccatcaccat cccggtgaca ataaccaacg caccagtcag tgcgtaggag
     6781 agaaagctaa tccatgtgag cttgatgcga ttgctgttag tcatgattgg cctgcgttca
     6841 aaaataaaat ggcatagcgg gatatgccgc gagcgggtga ttttaggtga ttttgtgatc
     6901 tgtttaaatg ttttattgca atcggttgct aaattgcatt ttaagaggtg atcttgatca
     6961 cggaataaaa agtgatcgtc aggttacata tatttcagat acgtaaaatt aggtaaaggg
     7021 atggccttgt tcttgaaggc tatttagaat ctcttcactt gctttttttc tgctctgttt
     7081 gttaaggaaa tctcatgttc aaatcgaccc tggcggcgat ggctgctgtt ttcgctcttt
     7141 ctgctctttc tcccgcagca atggcagcga aaggggaccc gcacgtattg ttgacaacct
     7201 cagctggtaa catcgaactg gagctggata aacaaaaagc gccagtgtct gtgcaaaact
     7261 ttgtcgatta tgtgaacagc ggtttttata acaacactac ctttcaccgc gtcattcctg
     7321 gctttatgat tcagggcggc ggtttcaccg agcagatgca gcagaaaaaa ccaaacccgc
     7381 caatcaaaaa tgaagccgat aacggcctgc gcaacacgcg tggcaccatc gcgatggcgc
     7441 gtaccgctga caaagacagc gccaccagcc agttctttat caacgttgcc gataacgcct
     7501 tccttgacca tggtcagcgt gatttcggtt acgcggtatt tggtaaagta gtgaaaggca
     7561 tggacgtggc cgataagatt tcccaggtgc cgactcatga cgttggtccg taccagaatg
     7621 tgccgtcaaa accggtagtt atcctttccg ctaaagtcct gccgtaatga tttctcgcgc
     7681 gggcaatctt gcccgcgctt ctgctctccc ggcgtaaccc ggatttgccg cttatacttg
     7741 tggcaaatgg acacgttcag ggaggcatca agtgaagaaa ctcaccgata agcaaaagtc
     7801 ccgtctctgg gagcttcagc gtaatcgtaa tttccaggcc agtcgccgtc ttgaaggcgt
     7861 cgagatgcct ttagtcactc ttactgtcgc agaggcttta gcgcgccttg tagagctgag
     7921 gaggcactat gagcgataaa ttcggcgaag ggcgcgatcc gtatctttat ccaggccttg
     7981 atatcatgcg taaccggctg aacatccgcc agcaacaacg gctggaacag gccgcttacg
     8041 aaatgacggc gctgcgtgct gcgaccattg agcttggtcc gctggtgcgc ggtttaccgc
     8101 atttgcgaac tatccatcgc cagctgtatc aggatatttt cgactgggca gggcaactgc
     8161 gtgaagttga tatttatcag ggcgatacgc cgttctgcca ctttgcttat atagaaaaag
     8221 agggcaatgc cctgatgcag gatctggagg aagaaggtta tctggttggc ctggagaaaa
     8281 cgaagttcgt cgagcggctg gcgcattact attgtgaaat caacgtgctg catcccttcc
     8341 gggtgggaag tggtctggca cagcggatct tcttcgagca actggcgatt catgccggat
     8401 atcaactgag ctggcagggt atcgaaaaag aggcctggaa tcaggcaaat cagagtgggg
     8461 caatggggga tctcaccgca ctgcagatga tatttagcaa agtggtaagc gaagccgggg
     8521 aatctgagta aaatagcgcg gttctttcgt accggagccg ccatgatcct gcttattgat
     8581 aactacgatt cttttacctg gaacctctac cagtactttt gtgaactggg ggcggatgtg
     8641 ctggttaagc gcaacgatgc gttgacgttg gcggatatcg acgcccttaa accacaaaaa
     8701 attgtcatct cacccggccc ctgtacgcca gatgaagccg ggatctccct tgacgttatt
     8761 cgccactatg ccgggcgctt gccgattctt ggcgtctgcc tcggtcatca ggcaatggcg
     8821 caggcatttg gcggtaaagt tgtgcgcgcc gcaaaggtca tgcacggcaa aacctcgccg
     8881 attacacata acggtgaggg cgtatttcgg gggctggcaa atccacttac cgtgacacgc
     8941 taccattcgc tggtggtgga acctggctca ttaccagcgt gctttgacgt gacggcctgg
     9001 agcgaaaccc gcgagattat ggggattcgc catcgccagt gggatctgga aggtgtgcag
     9061 ttccatccag aaagtattct tagcgaacaa ggacatcaac tgctggctaa tttcctgcat
     9121 ctctgatttc cgattgccat tcagtgattt tttatgcata ttttgtgatt ataatttcac
     9181 atttatttat gcgtaacagg gtgatcatga gatggcaatt gaacaaacag caattacacg
     9241 cgcgactttc gatgaaatga tcctgccgat ttatgctccg gcagagttta ttccggtaaa
     9301 aggtcagggc agccgaatct gggatcagca aggcaaggag tatgtcgatt tcgcgggtgg
     9361 cattgcagtt acggcgttgg gccattgcca tcctgcgctg gtgaacgcgt taaaaaccca
     9421 gggcgaaact ctgtggcata tcagtaacgt tttcaccaat gaaccggcgc tgcgtcttgg
     9481 gcgcaaactg attgaggcga cgtttgccga acgcgtggtg tttatgaact ccggcacgga
     9541 agctaacgaa accgccttta aactggcacg ccattacgcc tgtgtgcgtc atagcccgtt
     9601 caaaaccaaa attattgcct tccataacgc ttttcatggt cgctcgctgt ttaccgtttc
     9661 ggtgggtggg cagccaaaat attccgacgg ctttgggccg aaaccggcag acatcatcca
     9721 cgttcccttt aacgatctcc atgcagtgaa agcggtgatg gatgatcaca cctgtgcggt
     9781 ggtggttgag ccgatccagg gcgagggcgg tgtgacggca tcgacgccag agtttttgca
     9841 gggcttgcgc gagctgtgcg atcaacatca ggcattattg gtgtttgatg aagtgcagtg
     9901 cgggatgggg cggactggcg atttgtttgc ttacatgtac tacggtgtga cgccggatat
     9961 tctgacttct gcgaaagcgt taggcggcgg cttcccgatt agcgccatgc tgaccacggc
    10021 ggaaattgct tctgcgtttc atcctggttc tcacggttcc acctacggcg gtaatcctct
    10081 ggcctgtgca gtagcgggcg cggcgtttga tatcatcaat acccctgaag tgctggaagg
    10141 cattcaggcg aaacgccagc gttttgttga ccatttgcag aagatcgatc agcagtacga
    10201 tgtgtttagc gatattcgcg gtatggggct gttaattggc gcggagctga aaccacacta
    10261 caaaggtcgg gcgcgtgatt tcctgtatgc gggtgcagag gttggcgtaa tggtgctgaa
    10321 tgccggaccg gatgtgatgc gtttagcacc gtcgctggtg gtggaagatg cggatatcga
    10381 tgaagggatg caacgtttcg cccacgcggt ggcgaaggtg gttggggcgt aaataagacg
    10441 catcaggcaa aatatgtcgg atgcggcgtg aatgccttat ccgatggttt agcctgtatt
    10501 acgccttcga atcccgcaac ttgcgactca gccaaatccc gtgatgcggt cgctgacgcc
    10561 atgccatcga cgaaatggtg tgcatggtgt tcagatgacc aataacccgc tgtaaatgct
    10621 gctccagcgt acctgccgcg ccttcgtgcg gctgcatctc cggcgcatcc atgatattgg
    10681 catcgccaga actacccggt tcgtcatact ccagtcgctg ctgacaacgc tgaatggcga
    10741 tttcacaaga ctgtaaatac tcttgtgcca gttcaggtgg caatgcccgg tgttcccgcg
    10801 ccagcgtggt catggcatta atatgctcaa caataaactg gctgtgcgtt acccacagtt
    10861 tcatatctgc cagataatgg ctgttaaacg ccggttcctg catcgcctga ttcaatgagt
    10921 tatacagagt gttatgtgcc tgatttaccc gcattcgctg ccaggccagt ggcgtaggtt
    10981 gcggatcctc gctaagaatc aagcgaatcg cttcctgata ggcttctaaa gcgtcatggg
    11041 cgtttttacg caataacccg ctctgccact gcggccacag ccagacagta ccgccgaaag
    11101 caattaaaca accaataatg gtatcgataa gacgcggaag gatgtattgc tcgccgttca
    11161 accacaatag ttgcagggta tacactgcgg taatagtaaa accgaccgtc gcccagccgt
    11221 agtttttgcg caatatcagg tagctggcga gggtggtaat cagcatcaac gtcagggtgt
    11281 aaccttcggg aattttaaag tgcagcgcca cgcccgcaat gattaacccg accacggttc
    11341 ccacggagcg attcacaatc ctcagacggg ttgcgccata gccattttgt gtcaccagca
    11401 ataccgtcat caggatccag tacgacttcg gcagatgcag cgcggtgccc atcaggctgg
    11461 caacgcttaa catcacactg agtcgtccgg cattgcgtag cgccggagac tttagtgaca
    11521 gataactttt cagcgccgga agtaatggca ttcgccgctg tttatcggcc agtaagtcac
    11581 gggcatagag cggtttttgg gtgcgcagca cgcgggcgat gcggctgaaa tgccagtagc
    11641 agaattgccc aaccggatta tccggatgct ggcgggcgat tttttccagt gcgccaattt
    11701 gcttttccat cgtaaaacgc gttggcaggc gatggtaaag aatgtcatca gccagcacgc
    11761 gcaggcgagc ggcgacggtt tgcgcattcc agcggataac ttcttccgca tggctacgct
    11821 cgaccagctt ttgcacctct tccggctgat gcaaactgac cgaaatatgt tcctgtaaat
    11881 ccagcgcctc ctggaaaata cgcagcatcc gcttgtagtc agtattattt tgcgcggaaa
    11941 gcatatgcat ttgctgatag cactgggtaa ttagatcgac cgctttttgc tggcgcacca
    12001 gcagcggcgg cagcgctttt tcagggtcgg tgtgctgggt aagcaggctg tatttggctt
    12061 cacaataatc tgccagttca cggtacagca gacttagtga ctcgcgcagc ggttgttcgc
    12121 gccagatcca gaaccaaaac cagttaaaca atccgtacca gagagtgccc aacgcataga
    12181 tgagcaacgg ttcccagacc ggcatgtatc ccgccagact gagggtaaaa atggctgcca
    12241 gcagcgatgc gggaagcaat tttgcgtgca atggccccaa ctcagcagtg acgccaagta
    12301 ccagcgttaa tccggtcagc aaaaagggca ggggaacatc ttttgccagt agcagctgtg
    12361 tcagtaagct acaggtggca aacagcgacg caccaatgat taagcgtttg aaaaaacgtt
    12421 tatgaggcgt atcaaggccc gcaatattgc aacaggcagg aacgagagag aagagcagac
    12481 cgaatcgtaa ttcgccaagc attaacccaa cggccacggg caaacatagc accagcgttt
    12541 gtcgaagtgc atagttgata tcggggtgat aaatcagtct gcgccacatc gggggaaaca
    12601 aaatggcgcg ctaccaggta acgcgccact ccgacgggat taacgagtgc cgtaaacgac
    12661 gatggtttta ccgtgtgcgg agatcaggtt ctgatcttca agcatcttca gaatgcgtcc
    12721 cacggtttca cgagaacagc cgacaatctg accgatttcc tgacgggtaa ttttgatttg
    12781 cataccgtcc gggtgagtca tagcgtctgg ttgttttgcc agattcagca gagtctgtgc
    12841 aatgcggccc gtcacgtcga ggaacgccag gttgcccact ttctctgaag tgacttgcag
    12901 acgacgcgcc atctgtgcag acagacgcat cagaatgtcc gggtttacct gaatcaattg
    12961 gcgaaatttt ttgtacgaaa tttcagccac ttcacaggcg gttttcgcac gtacccatgc
    13021 gctacgttcc tggccctctt caaacaggcc cagttcgcca ataaaatcac cctgattcag
    13081 ataggagagg atcatttctt taccctcttc gtctttgatc agcactgcca cagagccttt
    13141 aacgatgtag tacagcgttt ccgctttttc accctggtga ataagcgtgc tcttggatgg
    13201 gtacttatga atgtggcaat gagacaagaa ccattcgaga gtcgggtctg tttgcggttt
    13261 gccaagcacc atgcgcggtt atcctctgtt ataagctttc tccagagcca gataacgccg
    13321 ctgtctctgg attgccgaaa tatgcttccc gctacctggg aaggggctat caactgtact
    13381 gcacggtaat gtgacgtcct ttgcatacat gcagtacatc aatgtattac tgtagcatcc
    13441 tgactgtttt agcatagctt tcgctttgtg tctcctggtg tctcgcttca gcatgaccca
    13501 ggtcgccttc cgttgcgcga tttggttagt acg
//
LOCUS       DADMHM010000105        13481 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.106, whole genome shotgun sequence.
ACCESSION   DADMHM010000105 DADMHM010000000
VERSION     DADMHM010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13481)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13481)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13481
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.106"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(102..3323)
                     /gene="carB"
                     /locus_tag="JN125_002589"
     CDS             complement(102..3323)
                     /gene="carB"
                     /locus_tag="JN125_002589"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HAY8872332.1"
                     /translation="MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRV
                     ILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL
                     ERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAA
                     DVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEM
                     EVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIG
                     VETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDE
                     LMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGAHDRLTTQMKSVGEVMAIGRTQQ
                     ESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVD
                     GVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNAEFLRQLKRKGFADARLAKLAGV
                     REAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLG
                     GGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLE
                     DVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAV
                     ERLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQT
                     AVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPA
                     YTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKA
                     TGVPLAKVAARVMAGKSLAELGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRST
                     GEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELD
                     ATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIR
                     RSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK"
     gene            complement(3341..4489)
                     /locus_tag="JN125_002590"
     CDS             complement(3341..4489)
                     /locus_tag="JN125_002590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase small subunit"
                     /protein_id="HAY8872333.1"
                     /translation="MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILT
                     DPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYL
                     KRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAK
                     EVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTI
                     VPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLA
                     LASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFD
                     GTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK"
     gene            complement(4945..5766)
                     /gene="dapB"
                     /locus_tag="JN125_002591"
     CDS             complement(4945..5766)
                     /gene="dapB"
                     /locus_tag="JN125_002591"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HAY8872334.1"
                     /translation="MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSL
                     LGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIG
                     TTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHH
                     RHKVDAPSGTALAMGEAIAHALDKGLKDCAVYSRESHTGERVPGTIGFATVRAGDIVG
                     EHTAMFADIGERLEITHKASSRMTFANGAVRSAFWLSGKESGLFDMRDVLDLNSL"
     gene            complement(5933..6847)
                     /gene="rihC"
                     /locus_tag="JN125_002592"
     CDS             complement(5933..6847)
                     /gene="rihC"
                     /locus_tag="JN125_002592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside hydrolase RihC"
                     /protein_id="HAY8872335.1"
                     /translation="MRLPIFLDTDPGIDDAVAIAAAIFAPELDLQLMTTVAGNVSVEK
                     TTRNALQLLHFWNAEIPLAQGAAVPLVRAPRDAASVHGESGMAGYDFVEHNRKPLGIP
                     AFLAIRDALMRAPEPVTLVAIGPLTNIALLLSQCPECKPYIRRLVIMGGSAGRGNCTP
                     NAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPELNRTGKMLHALF
                     SHYRSGSMQSGLRMHDLCAIALLVRPELFTLKPCFVAVETQGEFTSGTTVVDIDGCLG
                     KPANVKVALDLDVKGFQQWVAEVLALAS"
     gene            complement(6913..7863)
                     /gene="ispH"
                     /locus_tag="JN125_002593"
                     /gene_synonym="lytB"
     CDS             complement(6913..7863)
                     /gene="ispH"
                     /locus_tag="JN125_002593"
                     /gene_synonym="lytB"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HAY8872336.1"
                     /translation="MQILLANPRGFCAGVDRAISIVENALAIYGAPIYVRHEVVHNRY
                     VVDSLRERGAIFIEQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKV
                     HMEVARASRRGEESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEK
                     LSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRKDDICYATTNRQEAVRALAEQAEVVL
                     VVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQEEWVKEVKCVGVTAGASAPDILVQ
                     NVVARLQQLGGGEAIPLEGREENIVFEVPKELRVDIREVD"
     gene            complement(7865..8314)
                     /gene="fkpB"
                     /locus_tag="JN125_002594"
     CDS             complement(7865..8314)
                     /gene="fkpB"
                     /locus_tag="JN125_002594"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HAY8872337.1"
                     /translation="MSESVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASL
                     SEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFT
                     AMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEVLEIDPALEA"
     gene            complement(8383..8877)
                     /gene="lspA"
                     /locus_tag="JN125_002595"
     CDS             complement(8383..8877)
                     /gene="lspA"
                     /locus_tag="JN125_002595"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein signal peptidase"
                     /protein_id="HAY8872338.1"
                     /translation="MSQSICSTGLRWLWLVVVVLIIDLGSKYLILQNFALGDTVPLFP
                     SLNLHYARNYGAAFSFLADSGGWQRWFFAGIAIGISVILAVMMYRSKATQKLNNIAYA
                     LIIGGALGNLFDRLWHGFVVDMIDFYVGDWHFATFNLADTAICVGAALIVLEGFLPSR
                     AKKQ"
     gene            complement(8877..11693)
                     /gene="ileS"
                     /locus_tag="JN125_002596"
     CDS             complement(8877..11693)
                     /gene="ileS"
                     /locus_tag="JN125_002596"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005124083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HAY8872339.1"
                     /translation="MSDYKSTLNLPETGFPMRGDLAKREPGMLARWTDDDLYGIIRAA
                     KKGKKTFILHDGPPYANGSIHIGHSVNKILKDIIVKSKGLSGYDSPYVPGWDCHGLPI
                     ELKVEQEYGKPGEKFTAAEFRAKCREYAATQVDGQRKDFIRLGVLGDWSHPYLTMDFK
                     TEANIIRALGKIIGNGHLHKGAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFQAVD
                     QDALKAKFAVSNVNGPISLVIWTTTPWTLPANRAISIAPDFDYALVQIDGQAVILAKD
                     LVESVMQRIGVTDYTILGTVKGAELELLRFTHPFMGFDVPAILGDHVTLDAGTGAVHT
                     APGHGPDDYVIGQKYGLETANPVGPDGTYLPGTYPTLDGVNVFKANDIVVALLQEKGA
                     LLHVEKMQHSYPCCWRHKTPIIFRATPQWFVSMDQKGLRAQSLKEIKGVQWIPDWGQA
                     RIESMVANRPDWCISRQRTWGVPMSLFVHKDTEELHPRTLELMEEVAKRVEVDGIQAW
                     WDLDAKEILGDEADQYVKVPDTLDVWFDSGSTHSSVVDVRPEFAGHAADMYLEGSDQH
                     RGWFMSSLMISTAMKGKAPYRQVLTHGFTVDGQGRKMSKSIGNTVSPQDVMNKLGADI
                     LRLWVASTDYTGEMAVSDEILKRAADSYRRIRNTARFLLANLNGFDPAKDMVKPEEMV
                     VLDRWAVGCAKAAQEDILKAYEAYDFHEVVQRLMRFCSVEMGSFYLDIIKDRQYTAKA
                     DSVARRSCQTALYHIAEALVRWMAPILSFTADEVWGYLPGEREKYVFTGEWYEGLFGL
                     ADSEAMNDAFWDELLKVRGEVNKVIEQARADKKVGGSLEAAVTLYAEPELAAKLTALG
                     DELRFVLLTSGATVADYHDAPADAQQSEVLKGLKVALSKAEGEKCPRCWHYTQDVGKV
                     AEHAEICGRCVSNVAGDGEKRKFA"
     gene            complement(11736..12677)
                     /gene="ribF"
                     /locus_tag="JN125_002597"
     CDS             complement(11736..12677)
                     /gene="ribF"
                     /locus_tag="JN125_002597"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HAY8872340.1"
                     /translation="MKLIRGIHNLSQAPQEGCVLTIGNFDGVHRGHRALLQGLQEEGR
                     KRNLPVMVMLFEPQPLELFATDKAPARLTRLREKLRYLAECGVDYVLCVRFDRRFAAL
                     TAQNFISDLLVKHLRVKFLAVGDDFRFGAGREGDFLLLQKAGMEYGFDITSTQTFCEG
                     GVRISSTAVRQALADDNLALAESLLGHPFAISGRVVHGDELGRTIGFPTANVPLRRQV
                     SPVKGVYAVEVLGLGEKPLPGVANIGTRPTVAGIRQQLEVHLLDVAMDLYGRHIQVVL
                     RKKIRNEQRFASLDELKAQIARDELTAREFFGLTKPA"
     gene            complement(12685..12903)
                     /locus_tag="JN125_002598"
     CDS             complement(12685..12903)
                     /locus_tag="JN125_002598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2575 domain-containing protein"
                     /protein_id="HAY8872341.1"
                     /translation="MCRHSLRSDGAGFYQLAGCEYSFSAIKIAAGGHFLPVICAMAMK
                     SHFFLISVLNRRLTLTAVQGILGRFSLF"
     gene            13006..13269
                     /gene="rpsT"
                     /locus_tag="JN125_002599"
     CDS             13006..13269
                     /gene="rpsT"
                     /locus_tag="JN125_002599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006117633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HAY8872342.1"
                     /translation="MANIKSAKKRAIQSEKARKHNASRRSMMRTFIKKVYAAIEAGDK
                     AAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA"
BASE COUNT         3151 a         3806 c         3401 g         3123 t
ORIGIN      
        1 aaaagattta cttaatgggc aaaaaaaacg gtcctcatca gagaaccgta ttacttattc
       61 gatcaaatta gcggatgaaa aatatccgcc atgacacgct attatttgat ctgcgcgtgc
      121 atttcctgca ccgaaattac tttttcggtc gcgtcggcat tcagcgccat cgcggtagcg
      181 aaaccaccgt tcagggtggt gtcataatgc actttatatt gcagcgcact gcgacggatc
      241 acgcgggagt cttcaatcgc gcgacggcct gaagtggtgt tgatgatgta ggtatattcg
      301 ccattcttga tgcggtcctg aatgtgcgga cggccttcat gcaccttgtt caccagacgc
      361 ggattaatgc ccgcttcgcc cagcacaatc gccgtgccgt gggtcgcatc cagctcgaag
      421 ccctgtttca gcagttttgc cgccaggtcc accacgcgtt ctttatcgcc ttcgcgcacg
      481 gaaagcaacg cacgaccgtg tttcttcatg gtggagttgc tgcccagctg cgctttggca
      541 aacgcttcag cgaaggtgcg gcccacgccc atcacttccc cggtggagcg catttctggc
      601 cctaacagcg ggtcaacacc cgggaattta ttgaacggca gcaccacttc tttcaccgag
      661 tagtacggcg ggataacttc tttggttacg cccagctcag ccagcgattt gccagccatc
      721 acacgcgccg ccacttttgc cagcggtacg ccggtggctt tggagacgaa cggaacggta
      781 cgcgccgcac gcgggttaac ttcaatcagg tagacttcgt tgtttttcac cgcaaactgc
      841 acgttcatca gaccgcgcac ctgcaattcg aaggccagtt tctgcacctg ctggcgcatc
      901 acatcctgaa tttcctgact taaggtgtag gctggcagag aacatgcgga gtcaccggag
      961 tgcacgcccg cctgctcgat gtgctccatg atgccgccaa tcagcaccat ttcgccgtcg
     1021 cagatggcat ccacgtcaac ttctaccgcg tcatcaagga agtgatccag caacactggc
     1081 gcatcgttag acacgctgac cgccgtctgg aagtagcgac gcaggtcagc ttcgtcatag
     1141 acgatttcca tcgcccgacc gccgagaacg taagacggac gtaccaccag cgggtagcca
     1201 atctctttcg ccttctctac cgccatttca atagcggtaa cggtggcgtt cgccggttgt
     1261 ttcagtttca gacgctcaac cgcatgctgg aagcgttcac ggtcttctgc acggtcgata
     1321 gcatccgggc tggtgccgat aaccggtacg ccagcagctt ccagcgcgcg cgccagtttc
     1381 agcggggtct gaccgccgta ctgaacgata acgcctttcg gcttctcaat acgcacgatt
     1441 tccagcacat cttccagagt taccggctcg aagtagaggc gatcggaagt gtcgtagtcg
     1501 gtggagacgg tttccgggtt acagttaacc ataatggttt cgtaaccgtc ttcgcgcagc
     1561 gccagcgagg cgtgtacaca gcagtagtcg aattcgatac cctgaccgat acggttcggg
     1621 ccgccgccga gaaccatgat tttttcacgg tcggtagacg gattcgcttc gcactcttct
     1681 tcataagtgg agtacatgta agcggtgtcg gtggcgaact ctgccgcaca ggtatccacg
     1741 cgcttataaa ccgggtgcag gtcatactgg tcgcgcagct tgcggatttc cgcttcgcgc
     1801 acgcccgcca gttttgccag acgcgcatcg gcaaagcctt tgcgtttcag ctggcgcagg
     1861 aattcagcgt tcaggccagt gatgcccact tccgctactt tctcttccag acgcaccagt
     1921 tcttcaatct gtaccaggaa ccagcggtca atattggtca ggttgaacac gccgtccaca
     1981 gacaggcccg cacggaaggc atcggcgatg taccagatac gctctgcgcc agcatctttc
     2041 agttcgcgac ggattttggt taacgcttcc gggtcatcga ggctcacttt cgggtcgaat
     2101 ccagtcgcac cgacttccag gccgcgcagc gctttttgca gggattcctg ctgcgtgcga
     2161 ccaatcgcca tcacttcgcc aaccgatttc atctgagtgg tcagacggtc gtgagcacca
     2221 gcgaattttt cgaagttgaa gcgaggaatt ttagtaacca catagtcgat ggacggctcg
     2281 aaggaggccg gagtacgtcc gccagtgatg tcgttcatca gttcgtcgag ggtgtaaccc
     2341 accgccagtt tcgccgccac tttagcaatc gggaaaccgg tcgctttcga cgccagcgcc
     2401 gaagaacggg acacgcgtgg gttcatttcg ataacaatca ggcgaccgtt tttcgggttc
     2461 accgcaaact ggacattgga accaccggtt tcaacgccga tttcacgcag caccgccatc
     2521 gaggcgttac gcatgatttg atattctttg tcggtcagcg tttgggctgg cgcgacagtg
     2581 atggagtcac cggtatggat gcccatcgca tcaaagtttt cgatagagca gacgatgatg
     2641 cagttgtcat ttttatcacg caccacttcc atctcgtact ctttccagcc gatcagcgac
     2701 tcatcaatca gcagctcttt ggttggggag agatccagac cgcgggcgca aatttcttca
     2761 aactcttcgc ggttataagc gataccgccg ccgctaccgc ccatggtaaa ggatgggcga
     2821 ataatgcacg ggaagcccac gtcagcggca accgccagcg cttcttccat cgtgtgtgcg
     2881 ataccggaac gcgcggtttc cagaccaatt ttcttcatcg ctacgtcgaa acgacggcgg
     2941 tcttctgctt tatcaatcgc atcggcggtc gcaccaatca tagtcacgcc gaactcttcc
     3001 aacacgccct gacgctccag ctccagcgcg cagttcagcg ccgtctgacc gcccatcgtt
     3061 ggcagcaccg cgtccgggcg ctctttttca ataatcttgc gtactacttc ccagtgaatc
     3121 ggctcgatgt aggtcgcatc ggccatttcc gggtcggtca tgatggtcgc cgggttggag
     3181 ttcaccagaa tgacgcggta accctcttcg cgcagggctt tacatgcttg cgcgccagag
     3241 tagtcaaact cacacgcctg accgataaca atcgggcccg cacccagaat caggatactt
     3301 tttatatctg tacgttttgg catggctctt ttactcctga ttacttagcg gttttacggt
     3361 actgctcaat taactcgata aagtggtcga acaacggcgc tgcgtcgtgt ggcccagggc
     3421 tggcttccgg gtgaccctgg aagctgaaag ccggtttatc agtgcgatga atgccctgta
     3481 acgtaccgtc gaacagggat ttatgcgtga cacgcaggtt tgcaggtaat gttgcttcat
     3541 ccaccgcaaa accgtggttc tgggcggtga tcatcaccac gtttttctcc acatctttaa
     3601 ccggatggtt gccgccgtgg tgaccaaatt tcattttgac agtcttcgca ccgctcgcca
     3661 gcgccagcag ctgatgaccg aggcagatgc cgaataccgg aatatcggtt tcgaggaatt
     3721 tctggatggc ggtaatggcg taatcgcacg gggccgggtc gccaggaccg ttggagagga
     3781 agatgccgtc tggattcatt ttcagcacat cttccgcaga agtttgcgcc ggaacgatgg
     3841 tcaggcgaca gcctctatcc accagcatcc gcaggatgtt gcgcttggca ccaaaatcat
     3901 aagccacgac gtggaacggc agctcgtctt cttttttcgc ttctggcagg ccgccggtca
     3961 acgtccagct cccttgtgtc cagctatagg cttctgcggt ggtcacttct tttgccagat
     4021 ccatgccatt cagacctggg aacgcgcggg ctttttctaa cgccaacgcc gcatccgggt
     4081 tatcgcctgc gataatgcag ccattctgtg cgcctttctc gcgcagtaaa cgcgtcagct
     4141 tacgggtatc gatatcggca atcgccacga tgttatggcg cttcaggtaa gaagagaggt
     4201 cttcggtatt acggaagttg ctggcaatca gcggcaggtc gcgaatcacc agaccttgtg
     4261 catgtacctg agaagattct tcatcggcgt cattagtgcc gacattgcca atatggggat
     4321 aagtaagagt aacgatttga cgagaatagg aaggatcagt gaggatttct tgataaccgg
     4381 tcattgaagt attgaaaacg acttccccaa ccgccgaacc tgttgcccct atggcccgac
     4441 cgtgaaactg ggttccgtct tccagaacca atagcgctga cttaatcaaa acaccctcca
     4501 gagaatattc actcacttta tttgcatatt aattcacaat gatgacgtaa atcaatgcaa
     4561 atctgcttac cgacgaattt ctggcaaacg gcggcattct ggagatatgg gcgctaaaag
     4621 tcaacttaat ggcgggattt tttatattat tttgtggctc atgcatgttt tacgggcatt
     4681 aagcgacaaa aagatcatat aacctgttct ggaaaacgct tgcgcagcaa gaagattgca
     4741 tgaaataaaa gcgagcaggg aaaagtggac caaatggtca aattttacat taaaacaaca
     4801 aaaacagaag acaaaacatg taatttttgg cacttatata caatttaaaa acataacact
     4861 aaaaataaaa gggccaaaaa ttaaagccct ttataatcaa taaattaaat gtgttatttt
     4921 tgcaccataa caaatatttt gtggttacaa actattgaga tcaagcacat ctcgcatatc
     4981 aaaaagacca ctttccttac cactcaacca aaaagccgat cttaccgcgc cgttagcaaa
     5041 tgtcatgcgg ctggacgcct tatgggtgat ctccagacgc tcgccaatat cggcaaacat
     5101 cgcggtatgt tcgccaacga tgtcacctgc acgcacggtg gcaaaaccaa tggtgccagg
     5161 cacacgttca ccggtgtggc tttcacgact gtagaccgcg caatctttca gacctttatc
     5221 aagggcgtgg gcgatcgcct ctcccattgc cagtgcggtg cctgacggcg catcaacttt
     5281 atgtctatga tgtgcttcaa taatttcgat atcggtgtag tcacccatca ctttggctgc
     5341 tttctccagc agcttaagca tgacgttaac gccaacgcta aaattggcgg caaagacaat
     5401 cgcaatatcg gcggcggcgt cacgaatcgc ctgtttaccg gcttcgtcaa accccgtagt
     5461 gccgatcacc atccctttgc catgctggcg acaaaaagcg agatggttca gcgtaccttc
     5521 cggacgggta aaatcgataa acacatcaaa atcatctttt accgcatcga ggctgctttg
     5581 cacggtaacg cctgttttcc ctgcaccagc cagctcaccg gcgtcgctgc ccagtaaaga
     5641 agatccttcg cgctccagcg ccgcgcccag ctgcacgcct tctaatgcca gcgccgcctg
     5701 aatcaactgg cggcccatac gccccccggc tcccgcgatg gcaacgcgga tgtttgcatc
     5761 atgcatagct attctctttt gttaatttgc atagaccgtt ttcagagtaa ccagcgcatc
     5821 gctacgccgc cagccaaaaa cgctgataat tagaaattaa tgataaacag ggagggatat
     5881 cagtgaaagg catgagtcga tgaatgactg catgccgata acatgtgaca ggttacgacg
     5941 ccagagccag cacctcagcc acccactgct ggaagccttt cacatccaga tccaatgcca
     6001 cctttacatt ggctggtttg cccaggcaac cgtcgatatc aaccaccgtc gtgcctgagg
     6061 taaattcgcc ctgagtttcc actgccacaa aacacggttt gagagtgaac aattccgggc
     6121 gcaccagcaa ggcaatagcg caaagatcgt gcatacgcag tccactttgc atactgccgc
     6181 tacggtagtg gctaaacagg gcgtggagca tttttccggt gcgattcaac tccggcaaag
     6241 tagcgagata gtcaggggtt aatattgcct gattggtgac atccagaccg cacatgacga
     6301 tttcgatgcc gctacggaag acacaggcag ccgcttctgg atcggcagcg atattaaact
     6361 cggcgtttgg tgtgcagttg ccgcgaccag cagaaccgcc catgatcaca agacgacgaa
     6421 tatacggttt acattccggg cattgtgaaa gtaacagcgc aatattggtt aacgggccga
     6481 tggccaccag ggtaacgggc tctggtgcac gcatcagggc atcccgaatc gccagaaacg
     6541 ctggtatccc gagcggcttt cggttgtgct caacaaagtc gtagccagcc attcccgatt
     6601 cgccgtgcac agatgccgca tcacgcggtg cgcgtaccag cggcacagcg gctccctggg
     6661 cgagcggaat ctccgcattc cagaaatgca gcagttgcag ggcgttgcgg gtggttttct
     6721 caaccgagac attacccgcg acggtggtca tcagttgcag gtcgagttcg ggtgcaaaaa
     6781 tcgcggcggc aatggcgacg gcatcgtcaa tgccggggtc agtatcgagg aagataggta
     6841 aacgcatgtt ttctccataa aaaatgccgg taacaagacc ggcattttcg cataacttag
     6901 gctgctaatg acttaatcga cttcacgaat atcgacacgc agctctttcg gcacttcgaa
     6961 aacaatgttt tcttcacggc cttccagcgg aatggcttca ccaccgccca gctgctgcaa
     7021 acgtgccacc acattctgca ccagaatatc cggagccgat gcgcccgcag tcacgccgac
     7081 gcatttaacc tctttcaccc actcttcctg gatgtctttc gcatcgtcaa tcaaaaacgc
     7141 gcgtttgccc atacgctggg ccagctccgc cagacggttg gagttggagg agtttttcga
     7201 accgaccacc aacacaactt ccgcctgttc tgccagggcg cgtaccgctt cctgacggtt
     7261 agtcgtggcg tagcagatgt catctttgcg cggaccgaca attttcggga agcgtttacg
     7321 cagcgcgtcg atcacatcag acgtgtcatc caccgacagc gtggtctggg tcataaagga
     7381 gagcttctct tcgtttttga ccgtcagttt ccacacatcg tccggcgatt cgaccagata
     7441 cattccccct tccgggttac tgtactggcc cattgtccct tccacttccg ggtgcccggc
     7501 gtgaccgatg agaatagatt cttcgccacg gcgactggcg cgggcgactt ccatatgcac
     7561 tttggtcacc agcggacagg tcgcgtcaaa taccgtcaaa tcgcgacttt ttgcttcgtt
     7621 acgtaccgcc tgagaaacac cgtgtgcgga gaaaatcagg atcgcgccgt ccggtacttc
     7681 gctaatctgc tcaataaaga tagccccacg ctcacgcaag ctatcgacca catagcggtt
     7741 atgtaccact tcgtgacgga catatatcgg tgcgccgtaa atggccagcg cgttttcaac
     7801 aatgctgata gcgcggtcta ccccggcaca aaaaccacgc gggttggcca acaggatctg
     7861 catgttacgc ctccaatgcc ggatcgattt ccagcacttc aatatcaaaa tgaacggtct
     7921 gcccggccag cggatggttg aaatcaacgg taatggagtc gccgttaatt tcgcggatca
     7981 cgccaggcat ctcactgcca tccattgcgg taaaaagcat gattgcgcca atttctggct
     8041 cgcctgcatc cataaattca cggcgggaga agtactgaat caggtccggt gacggcacgc
     8101 caaacgccgc atctggctcc aacgagaagg tggttttatc gcccactttc agccccaaca
     8161 ggtgttgctc cagcccttca gaaagagaag catcacccag gcggaacagc gccggtttac
     8221 cgttgttgcg ggtagactcg gcggtggtgc catcgtcgag ttttagcgtg aagtgcacca
     8281 ggacggcgct attgctctgt acagattcag acatgcaggt ttgctcttat atttgaggat
     8341 ttttgccgga tgcggcgtaa acgccttatc cggcagggtt tattattgtt ttttcgctct
     8401 agaaggcaaa aaaccttcca gcacaatcag tgccgcaccg acacagatgg cagtatcggc
     8461 aaggttgaag gtggcgaagt gccagtcgcc gacgtagaag tcgatcatat cgacaacgaa
     8521 gccgtgccac aggcggtcga acaggttgcc cagcgcgccg ccaataatca gcgcgtaagc
     8581 gatattgttt agcttctgcg tggccttcga gcgatacatc atcactgcca ggatcacgct
     8641 aataccaatc gcaataccgg caaagaacca acgctgccag ccgccgctat cggcaaggaa
     8701 actaaacgcc gcgccatagt tacgcgcata atgcagatta agcgacggga acagcgggac
     8761 cgtatccccc agagcaaagt tctggaggat caggtatttg ctgcccagat cgataatcag
     8821 cacgactacc accagccaca gccagcgtag ccctgttgaa cagatcgatt gactcatcag
     8881 gcaaacttac gtttttcacc gtcaccggcg acgttgctga cacagcggcc gcagatttct
     8941 gcgtgttccg ccaccttgcc gacatcctgg gtgtagtgcc agcagcgtgg gcacttctca
     9001 ccttcggctt tactcaacgc gactttcagc cctttgagta cttcgctctg ctgagcatca
     9061 gcaggtgcgt cgtgatagtc tgcaacggta gcgccggagg tcaacaggac aaatcgtaat
     9121 tcatcgccca gcgcggtcag tttcgccgcc agttccggtt ctgcatacaa ggttactgcc
     9181 gcttccagcg agccacccac tttcttgtcg gcacgcgctt gctcaatgac tttgttcact
     9241 tcgccacgca ctttcaacag ctcgtcccag aacgcatcgt tcatcgcttc gctgtctgcc
     9301 aggccaaaca ggccttcgta ccactcaccg gtgaagacgt atttttcacg ttcgcccggc
     9361 aggtagcccc acacttcatc agcggtgaag gagaggattg gtgccatcca gcgcaccagc
     9421 gcttctgcga tgtgatacag cgcagtctgg cagctacgac gcgccacact gtccgctttg
     9481 gcggtgtact gacggtcttt gatgatgtcg aggtagaagg aacccatctc aacggagcag
     9541 aagcgcatca gacgctgtac cacttcgtgg aaatcgtatg cttcgtacgc cttgaggatg
     9601 tcttcctgtg ccgctttcgc acaacctacg gcccagcgat ccagtaccac catctcttcc
     9661 ggtttcacca tatcttttgc tggatcaaaa ccgttcaggt ttgccagcag gaagcgcgcg
     9721 gtgttacgga tacgacgata gctatcggca gcacgtttca ggatctcgtc agaaacggcc
     9781 atttcaccgg tgtagtcggt tgatgccacc cacagacgca gaatatccgc gcccagtttg
     9841 ttcatcacat cctgcggcga aacggtattg ccgatggatt tagacatctt gcggccctga
     9901 ccatccacgg taaagccgtg ggtcagtacc tgacgatacg gcgctttgcc tttcatcgcg
     9961 gtggagatca ttagggaaga catgaaccaa ccacggtgct ggtcagaacc ttccagatac
    10021 atgtccgctg catgaccggc aaattccgga cgcacgtcaa caacagaaga gtgggtagat
    10081 ccggagtcaa accatacatc caatgtgtcc ggcactttca cgtactgatc agcttcatcg
    10141 ccgaggatct ctttcgcatc aagatcccac cacgcctgga tgccgtcaac ttcaacgcgt
    10201 tttgccactt cttccattag ttcgagagta cgcggatgca gctcttccgt gtctttgtgc
    10261 acgaacagtg acatcggtac gccccaggtg cgctgacggg agatacacca gtcaggacgg
    10321 ttagcaacca tcgactcgat acgcgcctgg ccccagtccg ggatccactg cacgcctttg
    10381 atctctttca gtgactgcgc acgcagacct ttctgatcca tgctgacgaa ccactgcggc
    10441 gtcgcgcgga agatgatcgg cgttttgtga cgccagcagc acggatagct gtgctgcatt
    10501 ttctcaacgt gcagcagcgc gcctttttcc tgcagcagcg caacgacgat gtcgttcgct
    10561 ttgaagacgt tcacgccatc cagcgtcgga taagtgcccg gcagataagt gccgtccggg
    10621 ccaaccgggt tagcggtttc caggccgtat ttctgaccga tcacatagtc gtccgggccg
    10681 tggccaggcg cggtgtgaac ggcaccggta ccggcatcca gggtaacgtg atcgccgagg
    10741 attgccggaa cgtcgaagcc cataaacgga tgggtaaagc gcagcaactc aagctccgca
    10801 ccttttaccg tgccgagaat ggtgtaatcg gtcacgccga tacgctgcat tacgctttca
    10861 accagatctt tcgccagaat cacggcctga ccgtcgatct gcaccagcgc atagtcgaaa
    10921 tcaggtgcaa tagagattgc gcggttcgca ggcagagtcc acggcgtagt ggtccagatc
    10981 accagcgaga ttgggccgtt aacgttgctt acggcaaatt ttgctttcag tgcatcctga
    11041 tcgaccgcct gaaaagcaac gtcgatggac ggagaagttt tgtcgtaata ctcaacttcc
    11101 gcttccgcca gcgcagaacg gcagtcaacg caccagtgta ccggcttcgc gcctttgtgc
    11161 aggtgaccgt tgccgatgat tttgcccagc gcgcggatga tgttggcttc agttttgaag
    11221 tccatggtca ggtacgggtg cgaccagtcg cccagcacgc ccagacggat aaagtctttg
    11281 cgttgaccgt caacctgggt cgccgcgtat tcgcggcact tggcgcggaa ctcggcggcg
    11341 gtgaatttct cacccggctt accgtattct tgctctactt tcagctcgat cggcagaccg
    11401 tggcagtccc agccaggcac atacggcgag tcataaccgg aaagcccttt ggacttcacg
    11461 ataatgtctt tcagaatctt gttaaccgag tgaccaatat gaatgctgcc attcgcataa
    11521 ggagggccat catgcagaat gaaggttttt ttgccttttt tagccgcacg gatgatgccg
    11581 tacagatcat catcagtcca acgcgccagc attcccggtt cgcgcttggc gagatcgcca
    11641 cgcatcggga accctgtttc cggcaaattc agggttgatt tatagtcact catcagattc
    11701 tcggttccgt gtttcggttt gattacataa caggcttaag ccggttttgt tagcccaaaa
    11761 aattcgcggg cggttaattc atcacgcgca atctgcgctt tcagttcgtc cagcgacgca
    11821 aatcgctgct cattgcgtat ttttttacgc agcactactt gtatatggcg accgtaaagg
    11881 tccattgcaa catctaacaa atgcacttcc agctgctggc gaataccggc aaccgttggg
    11941 cgtgttccga tgtttgccac gccgggtaac ggcttttcac cgaggcccag cacttctacc
    12001 gcataaaccc ctttcaccgg ggaaacctga cggcgtagcg gtacattcgc cgtcgggaaa
    12061 cctatagtgc gccctaattc atcaccgtgg actacacgcc cggagatggc aaacgggtgc
    12121 cccagtaaac tttctgccag agccagattg tcatccgcca gcgcctgacg cacagcggtg
    12181 ctgctaatac gcacgccacc ttcgcaaaaa gtttgcgtac tagtgatatc gaagccgtat
    12241 tccatgccag ctttctgtaa taacaagaaa tcgccttcac gaccagcgcc aaagcggaaa
    12301 tcatccccta cggcaagaaa ttttacgcgc aaatgcttca ccagaagatc gctgatgaaa
    12361 ttttgcgcgg ttaacgccgc gaaacgcctg tcgaaacgca cgcacagcac gtaatcaacg
    12421 ccacactctg caaggtaacg cagtttttcc cgcagccggg tcagtcttgc cggggcttta
    12481 tcggtagcaa acagttccag tggttgaggt tcaaaaagca tcaccatcac cggtaagttg
    12541 cgcttgcgcc cttcttcctg caagccctgt aacagcgcgc gatgaccgcg atgcacgccg
    12601 tcgaaattac caatagtcag cacacaccct tcttgcgggg cctggctgag attatgtatg
    12661 ccgcgtatca gcttcatgtc tggctcaaaa cagtgaaaat cgtccgagta taccttgtac
    12721 agcggtcaag gttaaccggc gattgagtac cgaaatcaga aagaagtggc ttttcattgc
    12781 catggcgcaa atcacgggaa gaaagtgacc gcctgctgca atttttatcg cggaaaagct
    12841 gtattcacac cccgcaagct ggtagaatcc tgcgccatca ctacgtaacg agtgccggca
    12901 cattaacggc gcttatttgc acaaatccat tgacaaaaga aggctaaaag ggcatattcc
    12961 tcggcctttg aattgtccat atagaacaca tttgggagtt ggaccttggc taatatcaaa
    13021 tcagctaaga agcgcgccat tcagtctgaa aaggctcgta agcacaacgc aagccgtcgc
    13081 tctatgatgc gtactttcat caagaaagta tacgcagcta tcgaagctgg cgacaaagct
    13141 gctgcacaga aagcatttaa cgaaatgcaa ccgatcgtgg accgtcaggc tgctaaaggt
    13201 ctgatccaca aaaacaaagc tgcacgtcat aaggctaacc tgactgcaca gatcaacaaa
    13261 ctggcttaat cgccaatttg ctgaagcttt gtgaaaaagc ccgcgcaagc gggttttttt
    13321 atgcctgctg cttttatgat gcgtgagaga acacactacc ggttgccaga tagtcaaaag
    13381 atgctggctt ttgcagacat gccgttacac tttctgaact cttcgtggct taagaatcgt
    13441 aaaaccatcg gctgatacat tctgaacaag aatatctact c
//
LOCUS       DADMHM010000106        13463 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.107, whole genome shotgun sequence.
ACCESSION   DADMHM010000106 DADMHM010000000
VERSION     DADMHM010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13463)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13463)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13463
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.107"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..148
                     /locus_tag="JN125_002600"
     CDS             <1..148
                     /locus_tag="JN125_002600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HAY8872343.1"
                     /translation="TATPDIDLAPTSSEQTLNFFAWMEQIDQATPVTPGAVTANATYV
                     LDYK"
     gene            199..2658
                     /locus_tag="JN125_002601"
     CDS             199..2658
                     /locus_tag="JN125_002601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706516.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial biogenesis outer membrane usher
                     protein"
                     /protein_id="HAY8872344.1"
                     /translation="MDTVNIYRLSFVSCLVVAMPCALAVEFNLNVLDKSMRDRIDISL
                     LKEKGVIAPGEYFVSVAVNNNQISNGQKINWHKNDDKTIPCINDLLVDKFGLKPEVRQ
                     SLPLINQCVDFSSRPEMLFNFDQANQQLNISIPQAWLAWHSENWTPPSTWKEGVAGVL
                     MDYNLFASSYRPQDGSSSTNLNAYGTAGINTGAWRLRSDYQLNQTDSDDNHEQSGEIS
                     RTYLFRPLPQLGSKLTLGETDFSSNIFDGFSYTGAALASDDRMLPWELRGYAPQISGI
                     AQTNATVTISQSGRVIYQKKVLPGPFIIDDLNQSVQGTLDVKVTEEDGRVNNFQVSAA
                     STPFLTRQGQVRYKLAAGQPRPSMSHQTENETFFSNEVSWGMLSNTSLYGGLLLSGDD
                     YHSAAMGIGQNMLWLGALSFDVTWASSHFDTQQDERGLSYRFNYSKQVDATNSTISLA
                     AYRFSDRHFHSYANYLDHKYNDSDAQDEKQTISLSVGQPITPLNLNLYANLLHQTWWN
                     ADASTTANITAGFNVDIGDWRDISISTSFNTTHYEDKDHDNQIYLSISLPFGNGGRVG
                     YDMQNSSHSTTHRMSWNDTLDERNSWGMSAGLQSDRPDNGAQVSGNYQHLSSAGEWDI
                     SGTYAANDYSSVSSSWSGSFTATQYGAAFHRHSSTNEPRLMVSTDGVADIPVQGNLDY
                     TNHFGIAVVPLISSYQPSTVAVNMNDLPDGVTVAENVIKETWIEGAIGYKSLASRSGK
                     DVNVIIRNASGQFPPLGADIRQDDSGISVGMVGEEGHAWLSGVAENQKFTVVWGDNQH
                     CSLHLPEHMEDTANRLILPCH"
     gene            2673..3404
                     /locus_tag="JN125_002602"
     CDS             2673..3404
                     /locus_tag="JN125_002602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706517.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HAY8872345.1"
                     /translation="MTFMKGLPLLLLVASLCSHAALQPDRTRIVFNANDKATSLRVDN
                     RSDKLPYLAYSWLENEKGEKSDDLLVALPPIQRLEPKATTQVRIVKQASTTKLPGDRE
                     TLFFYNMREIPPAPEKNSDHAVLQVAIQSRIKVFWRPAALRKKAGEKVELQLQVSQQG
                     NQLTLKNPTAYYLTIAYLGRNEKGVLPGFKTVMVAPFSTVNTNTGNYSGSQFYLGYMD
                     DYGALRMTTLNCSGQCHLQAVEAKK"
     gene            3401..4461
                     /locus_tag="JN125_002603"
                     /pseudo
     CDS             3401..4461
                     /locus_tag="JN125_002603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415244.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
     gene            4568..5659
                     /locus_tag="JN125_002604"
     CDS             4568..5659
                     /locus_tag="JN125_002604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706518.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB family transcriptional regulator"
                     /protein_id="HAY8872346.1"
                     /translation="MLYRYTKEKIMRERRMPVLQWGMLCVLSLILSIGFLAVHLPAAL
                     LLGPMIAGIIFSMRGITLQLPRSAFLAAQAILGCMIAQNLTGSILTTLAANWPIVLAI
                     LLVTLLSSAIVGWLLVRYSSLPGNTGAWGSSPGGAAAMVAMAQDYGADIRLVAFMQYL
                     RVLFVAGAAVLVTCMMLGDNAEAVNQQIVWFPPVSINLLLTILLAVVAGTAGCMLRLP
                     SGTMLIRMLAGAVLQSGQLITIELPEWLLAMAYMAIGWRIGLGFDKQILLRALRPLPQ
                     ILLSIFALLAICAGMAWGLTRFMHIDFMTAYLATSPDGLDTVAVIAAGSNADMALIMA
                     MQTLRLFSILLTGPAIARFISTYAPKRSA"
     gene            complement(5656..6447)
                     /gene="nei"
                     /locus_tag="JN125_002605"
     CDS             complement(5656..6447)
                     /gene="nei"
                     /locus_tag="JN125_002605"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease VIII"
                     /protein_id="HAY8872347.1"
                     /translation="MPEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQH
                     VTHVGTRGKALLTHFSNDLTLYSHNQLYGVWRVVDTGEEPQTTRVLRVKLQTADKTIL
                     LYSASDIEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLD
                     QAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDE
                     NKHHGALFRFKVFHRDGELCERCGGIIEKTTLSSRPFYWCPGCQH"
     gene            complement(6483..7217)
                     /gene="pxpA"
                     /locus_tag="JN125_002606"
     CDS             complement(6483..7217)
                     /gene="pxpA"
                     /locus_tag="JN125_002606"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpA"
                     /protein_id="HAY8872348.1"
                     /translation="MKIDLNADLGEGCASDAELLTLVSSANIACGFHAGDAQTMQACV
                     REAIKNGVAIGAHPSFPDRENFGRSAMQLPPETVYAQTLYQIGALATIARAQGGVMRH
                     VKPHGMLYNQTAKEAQLADAIARAVYACDPALVLVGLAGSELIRAGKQYGLTTREEVF
                     ADRGYQADGSLVPRSQPGALIENEEQALAQTLEMVQHGRVKSITGEWATVTAQTVCLH
                     GDGEHALAFARRLRSTFAEKEIVVAA"
     gene            complement(7207..8139)
                     /gene="pxpC"
                     /locus_tag="JN125_002607"
     CDS             complement(7207..8139)
                     /gene="pxpC"
                     /locus_tag="JN125_002607"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpC"
                     /protein_id="HAY8872349.1"
                     /translation="MLKIIRAGMYTTVQDGGRHGFRQSGISHCGALDMPALRIANLLV
                     GNDANAPALEITLGQLTVEFETDGWFALTGAGCEARLDDNAVWTGWRLPMKAGQRLTL
                     KRPQHGMRSYLAVAGGIDVPPVMGSCSTDLNVGIGGLEGRLLKDGDRLPIGKSKRDFM
                     EAQGVKQLLWGNRIRALPGPEYHEFDRASQDAFWRSPWQLSPQSNRMGYRLQGQILKR
                     TTDRELLSHGLLPGVVQVPHNGQPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQ
                     PIHFVQCSLEEALKARQDQQRYFEQLAWRLHNEN"
     gene            complement(8133..8789)
                     /gene="pxpB"
                     /locus_tag="JN125_002608"
     CDS             complement(8133..8789)
                     /gene="pxpB"
                     /locus_tag="JN125_002608"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HAY8872350.1"
                     /translation="MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDIPNVV
                     EAIPGMNNITVILRNPESLALDAIERLQRWWEESEALEPESRFIEIPVVYGGAGGPDL
                     AVVAAHCGLSEKQVVELHSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPA
                     GSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGVC
                     "
     gene            complement(8812..9555)
                     /gene="ybgI"
                     /locus_tag="JN125_002609"
     CDS             complement(8812..9555)
                     /gene="ybgI"
                     /locus_tag="JN125_002609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000798886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radiation resistance protein YbgI"
                     /protein_id="HAY8872351.1"
                     /translation="MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTA
                     SQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDA
                     HPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGLELASWIEARLGRKPLWCGDT
                     GPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHAT
                     ERGGIRALSEWLNENTDLDVTFIDIPNPA"
     gene            9826..11307
                     /gene="dtpD"
                     /locus_tag="JN125_002610"
     CDS             9826..11307
                     /gene="dtpD"
                     /locus_tag="JN125_002610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide permease DtpD"
                     /protein_id="HAY8872352.1"
                     /translation="MNKHASQPRAIYYVVALQIWEYFSFYSMRALLILYLTNQLKYND
                     THAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSF
                     LYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGY
                     AQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLV
                     LLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFF
                     NMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKE
                     SVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAEL
                     FIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINY
                     SINAYIEVFDQITWGALACVGLVLMIWLYQALKFRNRALALES"
     gene            complement(11349..12767)
                     /gene="phrB"
                     /locus_tag="JN125_002611"
     CDS             complement(11349..12767)
                     /gene="phrB"
                     /locus_tag="JN125_002611"
                     /EC_number="4.1.99.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001740284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photo-lyase"
                     /protein_id="HAY8872353.1"
                     /translation="MTTHLVWFRQDLRLHDNLALAAACRNSSARVLALYIATPRQWAT
                     HNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFIASVEIVKQVCAENSVTHLFY
                     NYQYEVNERARDVEVERALRNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLK
                     RLREGMPECVAAPKVRSSGSIEPSPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCQN
                     GAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLSEL
                     IWREFYRHLMTYYPSLCKHCPFIAWTDRVQWQSNPAHLQAWQEGKTGYPIVDAAMRQL
                     NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD
                     AAPYFRIFNPTTQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWAQKAGVMLDYPQP
                     IVDHKEARLRTLAAYEEARKGA"
     gene            complement(12764..13273)
                     /locus_tag="JN125_002612"
     CDS             complement(12764..13273)
                     /locus_tag="JN125_002612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbgA family protein"
                     /protein_id="HAY8872354.1"
                     /translation="MNLQRFDDSTLIRIFALHELHRLKEHGLTRGALLDYHSRYKLVF
                     LAHSQPEYRKLGPFVADIHQWQNLDDYYNQYRQRVVVLLSHPANPRDHTNVLMHVQGY
                     FRPHIDSTERQQLAALIDSYRRGEQPLLAPLMRIKHYMALYPDAWLSGQRYFELWPRV
                     INLRHSGVL"
BASE COUNT         3228 a         3605 c         3300 g         3330 t
ORIGIN      
        1 caccgctact ccagatatcg acctggctcc gacctccagc gaacaaacgc tgaatttctt
       61 tgcctggatg gaacaaattg atcaggctac acctgtaacg ccaggcgcag ttacggcgaa
      121 tgcaacctac gtgctggatt ataaataagt attactttgg cggcgctatc gccgcctttc
      181 ataaaatatt tatcaggtat ggacaccgtg aatatttatc gactctcttt tgtatcctgc
      241 ctggtcgtgg cgatgccttg cgcattggcg gtcgaattca accttaatgt tctcgataaa
      301 tcgatgcgcg accgcattga tatttcatta ttaaaggaaa aaggagtcat tgctcccggt
      361 gagtattttg ttagcgttgc ggtaaataat aaccaaatca gtaacgggca aaagattaac
      421 tggcacaaaa atgacgataa aaccattccg tgcatcaatg atttactggt cgataaattt
      481 ggcttaaaac ctgaagtccg tcagtcgtta ccattgataa atcagtgcgt cgattttagc
      541 tcccgacctg aaatgctctt caatttcgat caagccaatc agcaactgaa tattagtatt
      601 ccgcaagcct ggctggcgtg gcactcagaa aactggaccc caccctccac atggaaagaa
      661 ggtgtcgccg gtgtcctgat ggattacaac ttgtttgcca gcagctaccg cccacaggat
      721 ggcagcagca gcactaatct taacgcctat ggaacagccg gaatcaacac gggggcatgg
      781 cgcttacgca gtgattatca gttgaatcag actgatagcg atgataacca tgaacagtca
      841 ggcgaaatat cacgtaccta tctttttcgc ccgttaccgc aattaggttc aaaattaacc
      901 ctcggcgaaa cggattttag ttccaatatt ttcgacggtt tttcttatac cggtgcggca
      961 ctggcaagtg acgatcgaat gttgccatgg gaactacgcg gctacgcccc acaaattagc
     1021 ggtattgcac agaccaatgc cacggtgacg atcagtcaat caggccgcgt catttaccag
     1081 aaaaaagtcc taccaggccc atttatcatt gacgacctta atcagtctgt tcagggcaca
     1141 ctggatgtca aagtgacgga agaagatggt cgggtgaaca atttccaggt ttcggcagca
     1201 tcgacgccct tcctgactcg tcagggacag gttcgctata aactggccgc gggtcagcca
     1261 cggccctcca tgtcacatca aactgaaaat gaaacctttt ttagcaatga agtttcctgg
     1321 gggatgctgt caaacacctc gctgtacggc ggcctgctgc tttctggtga tgactaccat
     1381 tctgccgcaa tgggtattgg gcaaaatatg ctgtggcttg gtgcgctgtc gtttgatgtc
     1441 acgtgggcca gtagccattt tgatactcag caggacgagc ggggcttaag ctaccgtttt
     1501 aattacagca aacaagtgga tgccactaac agcacgattt ccctcgccgc ttatcgtttc
     1561 tccgatcgtc attttcacag ctacgccaac tatctggatc acaaatacaa cgacagcgat
     1621 gcgcaggacg aaaaacagac gatcagctta tctgtgggcc aaccgattac cccactaaac
     1681 ctcaatcttt acgccaacct gctacatcaa acctggtgga atgcagacgc ctccacgacc
     1741 gccaacatca cggcaggttt taatgttgat attggtgact ggagagatat ctctatttcg
     1801 acgtcattca atacaaccca ttacgaagat aaagatcacg acaaccagat ttacctgtcg
     1861 atttcgctcc ccttcggtaa cggtggtcga gttggctatg acatgcaaaa cagtagccac
     1921 agcaccacac accgcatgtc gtggaacgat acgctggatg aacgtaatag ctggggcatg
     1981 tctgccggac tgcaatccga ccgtcctgac aatggagccc aggtgagcgg caactatcag
     2041 cacctgagtt cagcgggtga gtgggatatt tctggtacct atgccgccaa tgattacagt
     2101 tccgtcagca gcagctggag cggttctttc accgcaaccc aatatggtgc agcgtttcat
     2161 cgccacagct ccaccaatga accacgcctg atggtcagca ccgatggcgt ggcagatatt
     2221 ccggttcagg gcaatctcga ctacaccaac cattttggca ttgcggtggt accgttgatt
     2281 tccagttacc agccttccac cgtggcggtg aacatgaatg acttacccga cggcgtaaca
     2341 gttgcagaaa acgttatcaa agaaacgtgg attgaaggcg cgataggtta caaatcactg
     2401 gcttcccgtt ccggtaaaga cgttaacgtc atcattcgca acgccagcgg tcagtttcct
     2461 cccctcggag cggatatccg ccaggatgac agcggcatta gcgtggggat ggttggcgag
     2521 gaaggacatg cctggttaag cggagtcgct gaaaatcaaa agtttaccgt ggtctggggt
     2581 gataaccagc attgctcgct ccatcttcct gaacatatgg aagacaccgc aaatcgcctg
     2641 attttacctt gtcattaatt aaggaaatga aaatgacatt tatgaaagga ctaccccttt
     2701 tgttgttggt tgccagtctg tgcagccacg ctgcactaca acccgatcgc actcgtattg
     2761 tgtttaacgc taatgataaa gctaccagtc tgcgggtgga taatcgtagc gataaactcc
     2821 cctacctcgc ttattcctgg ctcgaaaatg aaaaagggga gaaaagcgat gatcttctgg
     2881 tcgccctgcc gccgatacaa cgtctggaac cgaaagcaac aacgcaggta cggatagtaa
     2941 agcaagcctc gaccacaaaa ttaccgggcg atcgcgaaac gctatttttc tacaatatgc
     3001 gtgaaattcc tcccgccccg gaaaaaaaca gcgaccatgc cgttctgcaa gtcgccattc
     3061 agagtcgtat caaggtgttc tggcgaccgg ctgcattacg caagaaagca ggagaaaagg
     3121 tcgaactgca gttacaggtc agccagcagg gcaaccaact gacactgaaa aatcctaccg
     3181 cgtattatct gaccattgcc tacttgggac gaaatgaaaa aggcgttctc cccggcttca
     3241 aaaccgtgat ggttgcgcct tttagtacgg tcaacacaaa caccggaaat tatagcggca
     3301 gccagtttta tctcggttat atggatgatt acggcgcgtt acgcatgacg acgctcaact
     3361 gcagcggaca atgccattta caagccgtgg aggcgaagaa atgagtgctg gcaagggagt
     3421 gttgctcgtc atctgtctgt tatttctgcc gttgaagtct gcgcttgccc tgaactgcta
     3481 ctttggttca tccggtggct cggtagaaaa atcagaagcg attcaacctt ttgctgtacc
     3541 aggcaatgcc aaactcggcg ataagatttg ggaatctgac gatattaaaa ttcccgtcta
     3601 ttgtgacaac aataccaacg gcaattttga aagtgagcat gtttatgcct gggtaaaccc
     3661 ctacccgggg gtgcaggatc gctattatca actcggcgta acttacaatg gcgttgatta
     3721 tgacgccaac cagggaaaaa gccgcatcga cactaaccag tgtattgaca gtaagaacat
     3781 tgacatttat acccctgagc agattatcgc gatgggatgg cagaacaaaa tttgctcggg
     3841 tgatcccgct aatattcaca tgtcgcgtac ctttctcgct cgcatgcggt tatacgtcaa
     3901 aatacgagaa atgccgccgc atgattatca aagtacgctt agcgactata tcgtcgtgca
     3961 atttgacggt gccggtagcg ttaacgaaga ccctactgcc caaaacctga aatatcatat
     4021 tactggtctg gaaaacattc gcgtgctgga ttgcagcgtc aatttttcca tttcaccgga
     4081 aacacaggtg attgattttg gtaaatttaa tttgctggat attcgtcgcc acacaatgtc
     4141 gaaaacattc agtattaaga cgacaaaatc acaaaatgac caatgcaccg acggatttaa
     4201 agtcagttcc tccttttata ccgaagaaac gttggttgaa gaagataaag cattgttgat
     4261 tggtaatggt ctgaagctac gtttgctgga tgaaaacgcc tcgccttata ccttcaataa
     4321 atatgctgaa tacgccgatt tcaccagcga catgttggtc tacgaaaaaa cctatacagc
     4381 tgaactttcg tccattgcag gtaccccatc gaggctgggc ccttcgatac agtggtgctt
     4441 tttaaaatta actataactg atttgccatg atgccctttg cagccggaaa gggcatctct
     4501 ttcagaaaat tgctgatttt cctcttttcc ttgattactg ttattttttc ctggcccggc
     4561 tttctttatg ctgtatcgat acaccaaaga gaaaataatg agggagcgaa ggatgccagt
     4621 tttgcagtgg ggaatgttat gtgtgctatc acttatcctt tctattggtt tcctcgcggt
     4681 acatctcccg gcggcgctat tacttgggcc gatgatcgcc gggatcatct tcagtatgcg
     4741 cggaattact ctgcaacttc cccgctccgc ttttctcgcc gcgcaggcca ttcttggctg
     4801 catgattgcg caaaacctca ctggttcgat tctcaccacg ctggccgcca actggccgat
     4861 cgtgcttgct attttactgg tgacgctgct ttccagcgcc atcgtgggtt ggttattggt
     4921 gcgctatagc tcactgcctg gaaataccgg tgcctggggt tcttctccag gcggcgcagc
     4981 ggcaatggtc gctatggcgc aagattacgg cgcagatatt cgcctggtgg cgtttatgca
     5041 atatctgcga gtgctgttcg tcgcgggggc cgctgttctg gtcacctgca tgatgctggg
     5101 tgataacgct gaagcggtta accagcaaat cgtctggttc ccgccagtga gcattaatct
     5161 cctgcttacg attttgctcg cagtcgttgc cggtacggcg ggatgcatgc tgcgtctacc
     5221 ttccggcacg atgctcatcc ggatgctggc gggcgcagtg ctccagtctg gtcagctcat
     5281 caccatcgaa ctaccggaat ggctgctggc gatggcgtat atggcaattg gctggcggat
     5341 tggtcttggt ttcgataaac aaatcttact gcgggcacta cgcccactac cgcaaatcct
     5401 gctgtcgatt tttgctctgc tagctatttg tgcaggtatg gcgtggggac tgacccggtt
     5461 tatgcatatt gattttatga ctgcctacct cgccaccagt cccgacgggc ttgataccgt
     5521 ggcggtcatc gccgcaggga gcaatgccga tatggcgctt attatggcga tgcaaaccct
     5581 gcgcctgttc agtattttgc tgacggggcc agccattgcg cggtttattt caacctatgc
     5641 gccgaagcgg tcggcctagt gctggcagcc tggacaccag taaaacgggc gcgaggacaa
     5701 cgtggttttc tcaatgatgc cgccacagcg ttcgcacagt tcgccatcac gatgaaaaac
     5761 cttaaagcga aacagcgccc catgatgctt attctcatcc acctgccccc gcgtagcgta
     5821 agaaaaccga ggaatctcca gtaacgcgtg tgcgagtgca tccagttgcg ccgcattgag
     5881 atctttcgct ttatgatttc cagtcaaccc aacctgccag aggatctcca cccgcaaata
     5941 attgccaagc ccagccagaa acgcctgatc gagcagtaat cctgcaaact gacggttacg
     6001 aaagcgcggt gacaataacc gttcctttac cacctccggc gtcagattcg gatccagcac
     6061 atcgggacca acgcgttgta aaaacggatg cgtggtcagt tgttccggcc tcaacatctc
     6121 aatatccgag gcgctataaa gcagaatggt tttgtcagcc gtttgcagtt ttacccgcaa
     6181 tactcgcgtg gtctgcggct cttcgccggt atcaaccacg cgccagacgc cgtaaagctg
     6241 attatggctg tagagcgtta agtcgttgga aaaatgagtt aacaacgcct taccacgcgt
     6301 tcccacatgg gtaacgtgtt gaccgataag ttgtgattga taagttttta actgcgggaa
     6361 ggcaaaccag acatcagtta gtggtttgcc tttgatcgcc gcctccaggt tatccgctgc
     6421 acggcggatc tccgggcctt caggcatggt gatatccttt tttcattctt tattaatcgg
     6481 ggttatgctg cgacaacaat ctccttttcg gcaaatgtag agcgtagtcg gcgggcgaac
     6541 gccagtgcgt gctcgccgtc gccatgcagg cagactgttt gcgccgtgac cgttgcccat
     6601 tcgccggtga tacttttgac tctgccgtgt tgcaccatct ctagcgtttg cgccagcgcc
     6661 tgttcttcgt tttcaatcaa cgcgcctggc tgacttcgcg gcaccagcga gccgtcagcc
     6721 tgataaccgc gatcggcaaa cacttcctcg cgcgttgtca ggccatattg cttgcctgca
     6781 cgaatcagct cgcttcctgc cagcccaacg agaaccaatg ctggatcgca agcgtatacc
     6841 gctctggcga tggcgtctgc cagttgtgct tctttcgccg tctggttgta caacatgccg
     6901 tgcggtttga catgacgcat tacgccgcct tgcgcacggg caatcgttgc cagcgcgcca
     6961 atttgataca gcgtctgggc gtaaacggtt tctggcggca gctgcatggc gctgcgacca
     7021 aaattttccc tgtcgggaaa actcgggtga gcgccaatcg cgacaccatt ttttattgct
     7081 tcacgcacgc aagcctgcat ggtttgggca tcgcctgcat gaaatccaca agcaatattg
     7141 gcagaggaaa ccagcgttaa tagctctgcg tcgctggcgc agccttcgcc cagatcggcg
     7201 ttcaggtcaa ttttcattgt gtagccgcca cgctaattgt tcgaaataac gttgttgatc
     7261 ttgccgcgct ttcagtgcct cttccagtga acactggaca aaatgaatcg gctgaccgag
     7321 cggaatttgc gccagatggt acatatcagc ctcaatgata caggcaatac gcgggtaacc
     7381 accggtggtc tgtgcgtcgt tcatcaacac aatcggctgc ccgttatgcg gcacctgcac
     7441 cacacccggt aacaaaccgt gagataacag ttcgcgatcg gtggtgcgtt ttaaaatttg
     7501 cccctgtaag cgatagccca tgcggttact ttgcgggcta agctgccagg gcgaacgcca
     7561 gaatgcatcc tgcgaggcgc gatcgaactc atgatattcc ggccccggca aggcgcgaat
     7621 gcggttgccc cacagcagct gtttaacgcc ctgcgcttcc ataaaatcac gcttcgattt
     7681 gccaatcggg agtcggtcac catccttcag taaacggcct tccagcccgc caatccccac
     7741 gttgagatcg gtgctgcatg accccattac cggcggaaca tcaataccac ccgcgaccgc
     7801 cagataactg cgcatgccgt gctgcgggcg tttaagcgtt aaacgctggc ctgctttcat
     7861 cggcaagcgc cagccggtcc agacggcgtt atcatccagc cgcgcttcgc aaccggcacc
     7921 cgtcagagca aaccacccat cagtttcgaa ctcaaccgtt aactgaccga gcgtgatctc
     7981 cagcgcgggg gcattggcgt cattacccac cagcaggtta gcaatgcgta acgcaggcat
     8041 atccagtgcg ccgcagtggc tgatacccga ctggcgaaaa ccgtgacgac cgccatcctg
     8101 cacagtggta tacatgcccg cacgaataat cttcagcata ctccctcctt ctgcggtaca
     8161 aagcgcacgc tgtctcccgg acgtaataag atgggttcgt cacgcgccgg atcaaacagg
     8221 ctgagtgagg tatgaccaat caactgccag ccacccggcg ttgccagcgg ataaacacca
     8281 gtctgcggcc cgccgatccc gacagaacct gccggaacga gcaagcgcgg ttcagcgcgc
     8341 cgtggcgtgt gtagttgttc cggcaaactc ccgagatacg ggaagcccgg ttgaaaacct
     8401 aaaaaccaga ccacgtattc cacggaggag tgcaattcaa caacctgttt ttcgctcaac
     8461 ccgcaatgcg ccgcgaccac cgccaaatcc ggtccgcctg caccaccgta aaccaccgga
     8521 atttcaataa agcgagactc aggttccagg gcctcgctct cctcccacca gcgttgcaaa
     8581 cgctctatgg catccagcgc cagcgactca ggattacgca aaatcaccgt gatattgttc
     8641 atgccgggaa tggcttcaac cacattcggt atatccacca gacgctgcgc cagtcgccag
     8701 atccgtttct ggctagccag cgtcaccggc ggttccagtt ccagcactac cgccgtttca
     8761 cctatcagat aacaacgcgc tcgttgcact ttcgatccct ctgattattc gttatgcagg
     8821 attaggaata tcaataaagg tcacatcaag atcggtattt tcattcagcc actcgctcaa
     8881 tgcgcgaata ccaccacgtt cagtggcatg gtgacctgca gcataaaaat gcaatccctg
     8941 ctcgcgggct gaatgaatgg tctgttcaga aacttcgcca gtaataaaag catccacgcc
     9001 aaaacgcgcg gcgctatcga taaaactttg cccgccgccc gtgcaccagg cgacgcgctg
     9061 gaccacctca ggtccggtat cgccacacca taacggctta cgtcccagac gcgcttcaat
     9121 ccaggaggct agttccagtc ccggcacagg catggtcagc tctccccacg gcaccaacgg
     9181 ctcaatttcg cccatgaccg tgatccccag taacgccgcc agctgtgcgt tattgcccag
     9241 ctcaggatgt gcgtcaagcg gcaaatgcca gccatacagg ttgatatcat tcgccagcaa
     9301 cgtttttaaa cggttacgct tcattccgcg aatgaccgga gactctcctt tccagaagta
     9361 gccatgatgc acaatgaccg catccgcgcc cagacgcact gcctcatcga gcaaagcctg
     9421 gctggcggtg acaccggtaa caattttttg caccgtctct ttgccttcca cctgcaaacc
     9481 attcggcgcg taatcactaa tcgccgcgct gttcagtttt tcgttaatca gttgttccag
     9541 ttcggtgttt ttcatcttcg cgccttccgt attctgatag ctacaccgtt aacatagcgt
     9601 tacctcgcct gttcgtcgat agccaatctt ttgacatatt aagaaacaaa cccgacgcca
     9661 aaagacgcaa attgtttata tcatcacgct tcagctaatg tatatttatg caatcagaca
     9721 gcatattgca taaataatca gatctgtatc aaagttttaa ctttaaggaa acacaagcac
     9781 gccgcgcaac tattacgtga cgttgccgtc aattgtggaa ttattatgaa taaacacgca
     9841 tctcagccgc gcgctattta ctatgtcgtt gcgctgcaaa tctgggaata ttttagcttt
     9901 tacagcatgc gtgccctgct gattctctat ctcaccaatc aactaaaata caacgatact
     9961 cacgcctacg agttatttag cgcctactgt tcgctggtgt atgtcacgcc aatcctcggt
    10021 ggctttttgg cggataaagt tctcggcaat cgcatggcgg tgatgctggg ggcgttattg
    10081 atggcgatcg gtcatgtggt gttgggtgcc agtgagatcc atccgtcatt cctctatctg
    10141 tccctggcga taatcgtttg tggctatggt ctgtttaaat ccaatgtcag ttgcctgctc
    10201 ggcgagctgt atgagccaac cgatccgcgt cgtgatggcg gtttctcgct gatgtatgca
    10261 gcgggtaacg tggggtctat tatcgcacct attgcctgtg gctacgccca ggaagagtac
    10321 agctgggcga tgggctttgg cctggcggcg gtgggtatga tcgcgggtct ggtcattttc
    10381 ttatgtggca atcgtcattt cacacatacc cgcggcgtta ataaaaaagt actgcgtgcg
    10441 acaaactttc tcctgcctaa ctggggatgg ctgctggttc tgctggtggc aacgcctgcg
    10501 ctgattaccg tattgttctg gaaagagtgg tcggtatacg ccttaattgt cgcgactatt
    10561 attggcctgg gtgtactggc aaaaatttat cgcaaagcag aaaaccagaa acagcgtaag
    10621 gagctggggc tgattgtgac gctcaccttc ttcaatatgt tgttctgggc cttcgcacaa
    10681 cagggcggca gctcgattag cctttatatc gaccgcttcg ttaaccgcga tatgtttggt
    10741 tataccgttc cgactgctat gttccagtcg attaatgcct tcgcagttat gctgtgcggt
    10801 gtgttcctgg cgtgggtggt taaagaaagc gtcgcaggta atcgtaccgt gcgcatctgg
    10861 ggaaaatttg ctcttggtct cggcctgatg agcgccgggt tctgcattct gaccttaagc
    10921 gcccgctggt ccgcaatgta tggtcactct tctctgccac tgatggtatt aggcctggcg
    10981 gtgatgggct ttgcggaact gtttatcgac ccggttgcca tgtcgcaaat tacgcgcatt
    11041 gaaatccccg gtgtgaccgg cgtattaacc ggcatttata tgctgctttc cggcgcgatt
    11101 gcgaactatc tcgcgggcgt gattgccgat cagacatcgc aggcttcgtt tgatgcttcc
    11161 ggggcgatca actactccat caatgcatat attgaagtat ttgatcaaat tacctggggc
    11221 gcactggcgt gtgtaggact ggtactgatg atttggctgt atcaggcgct gaaattcaga
    11281 aaccgcgcgc tggcgctgga gtcataatag gccagcacca tacctgataa aacgctcgct
    11341 gcgttttatc aggctccttt cctcgcttct tcgtacgctg ccagcgttcg cagccttgcc
    11401 tctttgtgat caactatcgg ttgcggataa tccagcatca cacctgcttt ctgcgcccac
    11461 ttccacggct catgcaccgc tttccctggt acatcgcgca gctccggtaa ccatcgacga
    11521 ataaactcgc cctcacggtc aaatttctcg ccctgggttg tcgggttgaa aatacgaaaa
    11581 tacggcgctg catcggttcc ggttgaagcg gcccactgcc agccaccgtt attggctgcc
    11641 aaatcaccat caatcagctg cgacatgaaa tatcgctcgc cttcgcgcca gtcgatcaac
    11701 aaatctttca ccagaaaact ggctgtaatc atccgtagcc ggttatgcat ccagccagtg
    11761 ctgttaagct gacgcatggc agcatcgaca atcgggtatc ccgttttgcc ttcctgccag
    11821 gcctgtaaat gtgcgggatt gctctgccac tgcacacgat ccgtccaggc aataaacgga
    11881 caatgtttac acaacgaggg gtaatacgtc atcagatgac ggtagaactc gcgccagatc
    11941 agctcactaa gccagacact accggcccca ccgtccagcg cctgcggctg ttccgccaac
    12001 aagcgatgca aacactggcg aggcgataac ccgcccgttg ctaggctggc ggacaaacga
    12061 ctggtgcctt ccactgccgg aaaatctcgt tgttgctcat attctccggc accgttctgg
    12121 caaaactggc gtaattgcgc aatcgccgct ttttcttcca ccgggaaatg cgcagtatcg
    12181 aaagactgac gaggataatt cagcgtaatg gatggcgagg gctctatcga tccgctacta
    12241 cgaacttttg gcgcagcgac gcactccggc atcccttccc gcagccgttt cagccaggca
    12301 ttcttaaaag gcgtaaagac tttgtacatc tcgtgattac cggtcatcac cgcgccaggc
    12361 ggcaggatca cgctgtcatc aaatccttca cacaccacgt tacgcagcgc tctttcaact
    12421 tccacatccc gcgcccgctc attcacttca tactgatagt tataaaacag gtgggtaacg
    12481 ctgttttccg cgcacacctg tttaactatt tcgacactgg cgataaagtc atccacttca
    12541 cggaacaata aaggaatacc tttttccgca agcgctattt gtagcccatt cagttgagca
    12601 ttgataagtt cagcctgacg cggcgacatg ttatgcgtcg cccactggcg tggtgtagcg
    12661 atatacaacg ccagcacgcg tgcagacgaa ttgcggcagg cggcagccag tgcgagatta
    12721 tcgtgcaaac gtaaatcctg gcgaaaccag accagatggg tagtcataaa actcctgaat
    12781 ggcgcaagtt aatcacacgc ggccaaagtt cgaaataacg ctgccctgaa agccaggcgt
    12841 caggataaag cgccatatag tgtttgatac gcatcagcgg cgcaagaagt ggttgctcgc
    12901 cacggcgata actatcgata agcgcagcca gctgctggcg ttctgtggaa tcaatatgcg
    12961 ggcgaaaata accctgaacg tgcatcaaaa cattggtgtg atcgcgcggg ttggcggggt
    13021 gagaaagcaa aacaactacg cgttggcggt actggttgta atagtcatcc agattttgcc
    13081 actggtgaat atcagccacg aacgggccaa gtttgcggta ctccggctga gaatgcgcca
    13141 gaaagacgag tttatagcgg ctgtgataat cgagaagcgc cccgcgcgtt aagccatgtt
    13201 ctttcagtcg atgtaactca tgaagggcaa agatacggat tagggtgctg tcatcaaatc
    13261 gttgtagatt cattactgct cctgaacggt ataaaggagt aagtgtagac gatggtaaat
    13321 gaattttatg gggcagagtt tttgcgggga agtattttgt tggtaaaaat attatcaact
    13381 tcatctgagc gagaattatt ctactatttc ccgagctgca ttcatttttt gtatttttta
    13441 tttttagaaa ataacagttc tca
//
LOCUS       DADMHM010000107        13413 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.108, whole genome shotgun sequence.
ACCESSION   DADMHM010000107 DADMHM010000000
VERSION     DADMHM010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13413)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13413)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13413
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.108"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            17..601
                     /locus_tag="JN125_002613"
     CDS             17..601
                     /locus_tag="JN125_002613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005113360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stability/partitioning protein"
                     /protein_id="HAY8872355.1"
                     /translation="MRPVEYQNGEAFTIRNVRVMPESIPAGFKALADMSPFESLLIVD
                     LGGTTLDVAKVQGQLAGISQVFCDPHVGVSLMADAVLSVMATNGMRTSHHIANTIIEH
                     RHDEAWLRQHIHNDAHYASLMAVIREKEETLKQRVIRALAGFSGYGRVMVVGGGAEIV
                     APAIREACGVNATFIADGVPQFALVNGLYAMDKE"
     gene            606..917
                     /locus_tag="JN125_002614"
     CDS             606..917
                     /locus_tag="JN125_002614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012907691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partitioning protein"
                     /protein_id="HAY8872356.1"
                     /translation="MTTPTRRISFYLKPTAVKNEGEACAWLDSLTPEARKSGQRVAFL
                     AGLALLKMNPAEAYRLAAWAGDEALSVTQTRTERPTSQPVSTAQITSQMAGNIRALFP
                     E"
     gene            981..1571
                     /locus_tag="JN125_002615"
     CDS             981..1571
                     /locus_tag="JN125_002615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001289969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ead/Ea22-like family protein"
                     /protein_id="HAY8872357.1"
                     /translation="MSEINYQALRERYSPVPVPKCPICGEEMSIQRISGAQVVYACSG
                     YGDDGDFKIGRTLADEHYEKSRVTVLDVGDPEVLALLDWLETKDNRIAELEKIATDYA
                     LKFQKAQDALKHAALLHSRTAQQTNNFAVSLPDISEYFINDVFQPLRYERDVERAIIK
                     AGGKALWQEKHEDRTHQSCDVNCGWFSPLTTDKNNT"
     gene            complement(2062..3108)
                     /locus_tag="JN125_002616"
                     /pseudo
     CDS             complement(2062..3108)
                     /locus_tag="JN125_002616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000087802.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
     gene            complement(3108..4232)
                     /locus_tag="JN125_002617"
     CDS             complement(3108..4232)
                     /locus_tag="JN125_002617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001426695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase"
                     /protein_id="HAY8872358.1"
                     /translation="MELKGGDKIILSNGAELHFLGISAASAQSYTGNFYFDEFFWVSR
                     FAELRKVAGAMATLSGLRRTYFSTPSTETHEAYAYWNGDRWNEKKASHKRQRFSVDWK
                     TLHNGLICPDRTWRQIVTLEDVVNHGWKHTDIDEIRDENTEDEFLNLYMCEFVREGES
                     AFNLNILIGCGVDGYDDWKDWKPFAPRPMGNRPVWIGYDANGSSGNGDSGAVSVVVPP
                     SVPGGRFRTVETRRVQGLEFEEQARVIEEFTCRYNVEHIGIDVTGGNGEAVYQIVKRF
                     FPAAIPYTFTLSSKRSLVLKMLQIMRAGRWEYDRAERELVAAFNAVRKVKTPGGFITY
                     ETDRARGISHGDLAWVTMLAVINEPIGGEGENERFTVMEF"
     gene            complement(4223..4858)
                     /locus_tag="JN125_002618"
                     /pseudo
     CDS             complement(4223..4858)
                     /locus_tag="JN125_002618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001746747.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
     gene            5013..5492
                     /locus_tag="JN125_002619"
                     /pseudo
     CDS             5013..5492
                     /locus_tag="JN125_002619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001262634.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GPO family capsid scaffolding protein"
     gene            5505..5897
                     /locus_tag="JN125_002620"
     CDS             5505..5897
                     /locus_tag="JN125_002620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000072320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M15 family metallopeptidase"
                     /protein_id="HAY8872359.1"
                     /translation="MSNTFKFSSRSEKNLQGVNPDLVKVTRRALEISEVDFGITEGLR
                     SRYRQKQLVATGKSQTMNSRHLTGHAVDVVAYIGSQVSWEWPLYEKIAAAFRQASREL
                     NIPVEWGGDWKTLKDGPHFQLPHGAYPA"
     gene            5894..6301
                     /locus_tag="JN125_002621"
     CDS             5894..6301
                     /locus_tag="JN125_002621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000780564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2570 domain-containing protein"
                     /protein_id="HAY8872360.1"
                     /translation="MKLWPTLGVAFLLTAGWGTSMRLSWSLGRENARNEAQASTLKST
                     ADTLNIISAGVQDMQQVLAQLRVENQQRNQDGEVRREQLRNDIAKDECAHALPDARFT
                     DRLRRHAERATASAVSPAYTADADHTGNASPLP"
     gene            6439..6906
                     /locus_tag="JN125_002622"
     CDS             6439..6906
                     /locus_tag="JN125_002622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000920596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY8872361.1"
                     /translation="MLKTDSLREAMTRSCRWCQANPEKFTIFVESGNIETTGETPSFV
                     YRYQMVMFVMDYAGELDDLTLPLLAWLSENQPQLLLNPERNQDIKFSAVINDDDSADL
                     LFTLPLRERVRITRSSQGTPQAEHLLEPKPRLPSSEGDWSHVFQDVTWGESDG"
     gene            6899..7534
                     /locus_tag="JN125_002623"
     CDS             6899..7534
                     /locus_tag="JN125_002623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000356302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage virion morphogenesis protein"
                     /protein_id="HAY8872362.1"
                     /translation="MDKAFTRVDETFEAIRDSLNQQAINNIARKLAQDLRRAQQARIR
                     SQKAPDGTAWTPRRRHVTRIQERIRFIWNNEARTLKNWHHDTGKYGRTITGWDEDKNS
                     IRTFYRDDIDRFLEIRTRRINQDSTKRVPMFVKLRTARYLKARADASGVTVGYSGVAA
                     RIARVHQFGERDQVAPGIFTDYPVRELLGISQADERPIYNTVLGRIAEAVR"
     gene            7531..8112
                     /locus_tag="JN125_002624"
     CDS             7531..8112
                     /locus_tag="JN125_002624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001271907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage baseplate assembly protein V"
                     /protein_id="HAY8872363.1"
                     /translation="MSAELMRLLSNIIRTGIISEVDEKSWRVRVRSGELETGWLRWNT
                     TRAGAFNVWLPPSPGEQVVIACIGGNPETAMIIGSLWSDAIPAPGKSLKEIVVSAPDG
                     AVFRYDADAGALSASGMKTATLQASVSVTLDTPVVECTDLLRTATLDVTKGGKMSGNI
                     THSGGNFTSNGITVHTHKHGGVKGGSDSTGGPQ"
     gene            8109..8459
                     /locus_tag="JN125_002625"
     CDS             8109..8459
                     /locus_tag="JN125_002625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate assembly protein"
                     /protein_id="HAY8872364.1"
                     /translation="MTTRYTGMNPDGTGNLNDMEHLKQSVRDILTTPLASRVMRREYG
                     SLVPDLIDEPMNNTTRLQCMSAAVIALTRWEPRIALDAIDVVWKAGGRAGVTLSGTVM
                     QTMQNVELTITLRE"
     gene            8463..9359
                     /locus_tag="JN125_002626"
     CDS             8463..9359
                     /locus_tag="JN125_002626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001297572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate assembly protein"
                     /protein_id="HAY8872365.1"
                     /translation="MPAVDLSQLPEPAIIAEPDFEAILADTKAMMIASYPAEQREAVS
                     AALELESEPLNVIAQTMSFREMLLRQRVNEGARACMLSHSAGTDLDNLAGNMNTKRLV
                     ITPATDTTDAVMESDTSLRLRAQRAYDGLSVAGPSGAYEYFARSASGLVRDARAISPS
                     PANVTVSILSTEGDGTATEALLNTVRAVLNAEDTRPVADRLTVQSARIVTWRLNAKLY
                     FYPGPESEPILAAAESSFRKWLAEQGLIGQDVALSAIAAALHVHGVQRVEIIEPTQNM
                     AISDIQAARCESFTISEGGRNE"
     gene            9352..9882
                     /locus_tag="JN125_002627"
     CDS             9352..9882
                     /locus_tag="JN125_002627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000071700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein I"
                     /protein_id="HAY8872366.1"
                     /translation="MSNSLLPPSASNFMRCAEAVGTRITDIPVDLNTLWSPDTCPVHL
                     LPYLAWAFSVDRWDRNWPEETKRQVIRDAWLIHRHKGTISALRRAIEPLGYLIRVSEW
                     WEFGGEPGTFTVEVGTLDSGVTEEMYLEMERLIADARPVSRHMTGLNIIQEIPGDIFA
                     AAATYDGEVITIYPGD"
     gene            9885..12035
                     /locus_tag="JN125_002628"
     CDS             9885..12035
                     /locus_tag="JN125_002628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000108506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY8872367.1"
                     /translation="MSTTTRKFKTIITDTGAKKLAQVAAPDGKPVRLTHMAVGDGGGT
                     LPTPDSKQTRLVHEVWRHTVNRVILDATHQNRIIAELVIPPETGGFWIREIGVFDEHG
                     DLIAVGNTAESYKPAVAEGSGRAQTFRTILTVSSTATVALTVDNTMVMATVDYVDDKL
                     KEHEQSRRHPDASLTAKGFVQLSSATNSVSETQAATPKAVKAAYDLANGKYTAQDAST
                     TRKGLVQLSSATNSTSETQAATPKAVKAAYDLANAKYTAQDATTAQKGIVQLSSATNS
                     TSETLAATSKAVKAVMDETNKKAPLNSPALTGTPTTPTARQGTNNTQIASTAFVMAAI
                     AALVDSSPDALNTLNELAAALGNDPNFATTMTNALAGKQPKDAILTALAGLATAADRF
                     PYFTGNDVASLATLTKVGRDILAKSTVAAVIEYLGLQETVNRAGNAVQKNGDTLSGGL
                     TFENDSILAWIRNTDWAKIGFKNDADGDTDSYMWFETGDNGNEYFKWRSRQSTTTKDL
                     MTLKWDALNILVNAVINGSLGVGSTNALGGSSIVLGDNDTGFKQNGDGILDVYANSQR
                     VFRFQNGVAIAFKNIQAGDGKKFTLSSSNNFTKNATFNLWGASTRPVVAELGDEAGWH
                     FYSQRNTDNSVIFSVNGQIQPSNWGNFDSRYVKDVRLGTRVVQLMARGGRYEKAGHAI
                     TGLRIIGEVDGDDEAIFRPIQKYINGTWYNVAQV"
     gene            12039..12566
                     /locus_tag="JN125_002629"
     CDS             12039..12566
                     /locus_tag="JN125_002629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001762409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HAY8872368.1"
                     /translation="MQHLKNIKSGNPKTKEQYQLTKNFDVIWLWSEDGKNWYEEVNNF
                     QDDTIKIVYDENNIIVAITKDASTLNPEGFSVVEIPDITANRRADDSGKWMFKDGTVV
                     KRIYTADEQQQQAESQKVALLSEAESVIQPLERAVRLNMAMDEERTRLESWERYSVLV
                     SRVDTANPEWPQKPE"
     gene            complement(12595..13128)
                     /locus_tag="JN125_002630"
     CDS             complement(12595..13128)
                     /locus_tag="JN125_002630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000972171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HAY8872369.1"
                     /translation="MMHLKNITAGNPKTKEQYQLTKQFNIKWLYSDDGKNWYEEQKNF
                     QPDTLKMVYDHNGVIICIEKDVSAINPEGASVVELPDITANRRADISGKWLFKDGVVI
                     KRTYTEEEQRQQAENEKQSLLQLVRDKTQLWDSQLRLGIISDENKQKLTEWMLYAQKV
                     ESTDTSSLPVTFPEQPE"
     gene            complement(13131..>13413)
                     /locus_tag="JN125_002631"
     CDS             complement(13131..>13413)
                     /locus_tag="JN125_002631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000108509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY8872370.1"
                     /translation="ELGWSDFYTTTRKPSAGDVGAYTRAECNSRFITGIRLGGLSSVQ
                     TWNGPGWSDRSGYVVTGSVNGNRDELIDTTQARPIQYCINGTWYNAGSI"
BASE COUNT         3374 a         3542 c         3569 g         2928 t
ORIGIN      
        1 caaaaaagcg aacgtcatgc gcccggtgga gtaccagaac ggcgaagcat tcactatccg
       61 taacgtacgg gttatgcctg aatccattcc ggctggcttt aaggcactgg ctgacatgag
      121 tccgtttgaa tccctgctga ttgtggattt gggcggaacc acgctggatg tggcaaaggt
      181 tcaggggcaa ctggcaggta tcagccaggt gttttgcgat ccacacgtgg gcgtttctct
      241 gatggccgat gccgtactgt cggtgatggc cactaacggt atgcgcacca gtcaccacat
      301 cgccaatacc attatcgaac atcgccatga tgaagcctgg ctgcgccagc acatccacaa
      361 tgacgcgcat tacgccagcc tgatggcggt aattcgtgaa aaggaagaaa cactgaaaca
      421 acgcgtgatc cgcgcgctgg cgggtttttc gggttacggg cgggtgatgg ttgtcggtgg
      481 aggggcggag attgtggcac ccgctatccg cgaagcctgc ggagttaatg cgactttcat
      541 cgcggacggg gtgccacagt ttgctctggt taatgggctg tacgcaatgg acaaggagta
      601 aaccaatgac gactccaacc agacggataa gtttctatct gaagcccacc gccgtcaaga
      661 acgaaggaga agcatgcgcc tggctggaca gccttacacc agaagcccgc aaaagcggcc
      721 aacgcgtggc ttttctggcc gggctggcac ttctgaaaat gaatccggca gaggcttatc
      781 gactggctgc atgggctggt gatgaagcgt tatcagtgac acaaaccagg acagaacgcc
      841 ccacatcaca gccagtatca accgcacaga taaccagtca gatggccgga aatatccggg
      901 cgttatttcc tgaataacac aacatcaggg cgagttcgcc ctgctctcca cctcagaaca
      961 taaacaagga gaacgactta atgagcgaaa tcaactatca ggcattacgt gaacgttatt
     1021 cacctgtgcc agtaccgaaa tgccctattt gcggcgagga aatgtcaatt cagcgaatat
     1081 ctggagcaca ggttgtttat gcctgctccg gttatggtga tgatggagat ttcaaaattg
     1141 gccgaactct tgctgacgaa cattatgaaa aatcacgcgt aacagtgttg gatgtcgggg
     1201 atcctgaagt attggcgcta cttgattggc tggaaaccaa agacaaccga atcgctgaac
     1261 tggaaaaaat cgccactgac tatgcactta aattccagaa agcacaggac gcattaaagc
     1321 atgccgcttt gctgcatagc aggacggcgc aacaaacaaa taattttgca gtatcgcttc
     1381 cggacataag cgaatatttc attaatgacg tatttcagcc cttgcgatac gagcgggatg
     1441 ttgaaagagc catcataaag gctggcggaa aagcattgtg gcaggagaaa cacgaggaca
     1501 gaacgcatca gtcatgcgat gtaaattgtg gatggtttag cccactgacg acagataaaa
     1561 ataacacctg atccccctca aactagggcg ataatcgcac atcgccctgc tgcacaatag
     1621 tgcacaaatt tgcacaattt ttttgaacga atttttgccc ttccagcccg cgtggcggct
     1681 ggatccgtca aggatccgtg cgtgcacaaa aaaacgcgct ttttctgcgc gcaggtgacg
     1741 ggggaacagc ccgcgtttca gggggtaaat agcgttccct taacgatgtc gcagcgacac
     1801 gacagaatgg ccgtatttct cacgctgagc gtgaaaaata cgtgagggat tctgatttga
     1861 tggggtgaaa ggtaaggccg tcaaaatcgc actgaggcgg cgagaacatg cagtcaacgc
     1921 ggtgggattg cgtaagagtc tgaccgtcga tggtggcgat aaactggaag gcgtcgtgaa
     1981 attatctgac tgatacagga gctggagagt cggggcataa attttttatg ccccggcgaa
     2041 gcagcagaca agcgaagcgc atcaggatgt gggctggatg tctaacagtg cgtaagggtt
     2101 aaagcggatc acctcttcgc caagccagtc attgatgtgc ttcatggcct ccatgacggg
     2161 catcagctcg ttaattgcgt aaacccgcgc ggccttctcc acatcaccaa acgcactttt
     2221 ttcacccggc atcgccccca tcagttgcgg cggaacgcgg tgcgcagcca gcacatcatc
     2281 acgggatgcc gccttaacat tcatgaactc atcctttgcg gtgatctgct ggaacggcaa
     2341 aatttgcacc ccctctttgc ccccgttggg cgcatgaatg agcacgtttt taaacgcacc
     2401 accaccacgc gcaccctgta gcgtttcttt cagggagtcc atgctttcgc ggtttacctg
     2461 cgcggcaccg atgtagatga tgcacccggc gtgggatccg ttgtcgtaat acagttttct
     2521 gaacatgtcc gccgaatgag acaggctggc cgagagtaat gcgccgagat attccggcat
     2581 gccgtagatt tcctggttaa tgtcaggatt catcaggtga cacactttgc ctgggcgaaa
     2641 ctgaaacgca tccttgccat cctgcacata ccaccatgat tcaagatcgc ttccgcgtcg
     2701 catgtatttc gccagggcgt gccgtaattt aagcggttcg ccgagcatat tgcttcgaag
     2761 ctcaaggaat gcgttaccga acacaaacca gtccagcgcc agcgccgaga aatcctaccg
     2821 ggaaagcagc gggtgcggga tgtagcaacc gagcaataca ttgcgcttaa agtaaagcgc
     2881 agactgatgc caagacgttt gccgggcagc tcttgccaga ccgtaccagt ccaccggggg
     2941 ttcataccac cgcccgttat cagcacagta catattgtcc agcaggtcat gcccggtcag
     3001 gcgataagga ccatcaaatg tgaatgcact gagcgatgat tctttcctga gcgcatcagc
     3061 gagatcaatg cgtgaactca tgcgcacttt tttatttttt ctgctcatca gaactccata
     3121 accgtgaaac gctcgttttc tccttcgccg ccaatcggtt cgttaatgac agcaagcatg
     3181 gttacccacg caaggtcgcc gtggctgatc cccctcgctc ggtccgtttc gtaagtgata
     3241 aagccgcccg gtgttttcac cttacgcacg gcgttaaagg ccgcgaccag ctcgcgttcg
     3301 gcgcgatcgt attcccaccg cccggcacgc attatttgca gcattttcag taccagcgac
     3361 cgttttgatg acagcgtgaa ggtgtacgga atagcggcag ggaaaaaccg tttcactatc
     3421 tgataaacag cctccccgtt cccgcccgtc acatcaatgc cgatgtgttc cacgttgtag
     3481 cgacacgtga actcttcaat gactctggcc tgttcttcaa actccagccc ctgaacgcgt
     3541 cgcgtctcca ccgttcgaaa acggccacca ggaacagacg gaggaaccac cacggacaca
     3601 gcgccgctgt cgccgttgcc actgctgccg tttgcgtcat acccaatcca taccggacga
     3661 ttccccatcg ggcggggagc aaaaggtttc cagtctttcc agtcgtcgta tccgtcaacg
     3721 ccgcagccaa tcaggatatt caggttaaat gccgattccc cttcgcggac aaactcgcac
     3781 atatagagat tgaggaactc gtcttcggtg ttttcatcac gaatttcgtc gatatcggtg
     3841 tgtttccagc cgtgattaac cacatcttcc agcgtgacaa tttgccgcca cgtccggtca
     3901 gggcagataa gcccgttatg cagcgttttc cagtccacag aaaaacgctg gcgtttatgc
     3961 gaggcctttt tctcgttcca gcggtcgccg ttccagtagg cgtatgcctc gtgcgtttcg
     4021 gtggatggcg tggagaagta ggtgcgccgc agtccgctga gggttgccat agcgccagcc
     4081 accttgcgca gttcagcaaa gcgactgacc cagaaaaatt catcaaaata aaaattgccc
     4141 gtataggact gtgccgacgc agcagaaatg ccgagaaaat gcagctctgc gccgttggag
     4201 aggatgattt tatcgccccc tttcagctcc acatcaactt cagccgcgcc ttctgaataa
     4261 tgcttttaaa ctggaacgcc tgacgacgcg acgcagacaa aaaaatctgg ttacgctggt
     4321 aagattgcgc cacatcgtca cgcagcgcca tcagcagtgc ttcctgtgca aaataccagg
     4381 tcgccccaat ctgtcgggat ttcaggatca tcctgttacg tatcccggct tccctgcaaa
     4441 gggtcaggga gtcaaaccag ccccgctgat gccactccag cctgctgatg attttttccc
     4501 gcagtgcggc aatctgttcc ggcgtgaaat gatttttgag ttttttcgcc cggcctttct
     4561 ttcctgcggc catcacatcc ggctggccat catgcagctt tttaagctgc cgggtcagca
     4621 ggtctatttc cttaaagtca ccgcctgttt tattctgttt ttcagtaagc tggatgaggc
     4681 gcgcatcgat ggactgcgtg acacgctgcc cgggtggcgt ttcatcccac tggtcacgtt
     4741 ttttccacgc ataaatcgtg ttcgggttta ttcccatcag acgtgatatt tctgcgggcg
     4801 gataaccctg ccagtaaagt tgccgcgcac gctggcgcac aaaagcgtcc tgaatcattg
     4861 ctccccctga gtaattacag gaagattacc cgcgcgcgaa actgttctcc ttaaccctct
     4921 gttctggccg ttttcttaca acaaaagccc tttgtatcag cctgttacgc tttgccatca
     4981 tgactgaaga accagtcaga ggggcaaaaa ctatggctaa tgaaaaaaag acatcccgca
     5041 aaaagtttcg cgtggctgtc tccggatcaa ctgttgatgg ccgtgaaatc agtccggtgc
     5101 atctgcgtga agccgccgag aacttcaacc cggatgttta cgctgcccgc gtgaacgttg
     5161 agcactatct ctcgccatgc ccgtcaagcg aattttccgc aatgggcgat gtcaccgcac
     5221 tgagtacgga agacattacg gaaggtccgc tggccggacg tactgcgctg tatgcagaaa
     5281 tcgaaccgac cgagcgcatg aagcagcttg ttgcggacgg caagaaaatc tattccagta
     5341 tcgaactgca cccgcagttc tccgttaacg ggcgcgccta tctggtcggg ctggcgatga
     5401 ccgacacccc ggcaagcctg ggcactgagc gcctgaaatt cacggcacag caacgtcagg
     5461 cggtgatgac gtttaacagt atccagggtg aaggagaagg acgaatgagc aacacattta
     5521 aattcagcag ccggagcgaa aagaatttgc agggtgtaaa tcctgatctg gtgaaagtga
     5581 cccgacgggc actggaaatc tcggaagtgg attttggtat caccgaaggg ttgcgcagcc
     5641 gttaccgcca gaagcaactg gtggccacgg gtaagagcca gaccatgaac agccgccacc
     5701 ttacggggca tgccgtggat gttgtggctt atatcggcag ccaggtgtca tgggaatggc
     5761 cgctgtacga aaaaatcgca gcagcattca gacaggccag ccgggaactg aatattccgg
     5821 tggaatgggg cggcgactgg aagaccctga aagacggacc gcattttcag ttaccacacg
     5881 gagcctatcc ggcatgaagc tctggcccac gcttggcgtc gctttccttc tgactgccgg
     5941 atggggaaca tccatgcgtc tgtcgtggtc gctgggccgg gagaacgcca gaaacgaagc
     6001 gcaggccagc accctgaaaa gtaccgccga caccctgaat atcatcagcg ccggggtaca
     6061 ggatatgcag caggtgctgg cgcaactccg cgtggaaaat cagcaacgca atcaggacgg
     6121 agaggtaaga cgtgaacagc tacgcaacga tattgcaaaa gatgaatgcg cccacgcttt
     6181 gcctgacgct cgttttactg acaggctgcg caggcacgca gaacgcgcca ctgccagcgc
     6241 cgtcagtccg gcttataccg cagacgctga ccataccggt aacgcctccc cccttccctg
     6301 acactcccac atggggaaat ctcggtatat ggggcgaccg ccttctggat gcactggaaa
     6361 cctgtaacgc ggataaacgg gccattgaat tactggaaca gcgcaggctg caacgactga
     6421 acaacgagga taacaaccat gctgaaaact gattccctgc gtgaagccat gacccgttca
     6481 tgccgatggt gtcaggctaa cccggaaaaa ttcaccattt tcgtggagag cggcaacatt
     6541 gaaacgaccg gagaaacccc atcgtttgtt taccgctatc agatggtgat gtttgtcatg
     6601 gattacgccg gggagctgga cgacctcacg ctgccgctgc tggcgtggtt atccgaaaat
     6661 cagccacagt tgttgctcaa ccctgagcgt aatcaggaca tcaaattctc cgccgttatc
     6721 aatgacgatg acagcgccga tctcctgttt acgctccccc tgcgggaacg cgttcgcatc
     6781 acgcgcagca gtcagggcac accgcaggca gaacacctgc tggagccaaa accccgcctg
     6841 ccatcttccg aaggcgactg gtcgcatgta ttccaggatg tgacgtgggg tgaaagcgat
     6901 ggataaggca ttcactcgcg tggatgaaac ctttgaagcc atccgcgaca gcctgaatca
     6961 gcaggccatc aataacatcg ccagaaagct ggcacaggat ttacgccgcg cccagcaggc
     7021 acgtatccgg tcacagaaag cgccggacgg gaccgcatgg acaccacgca gacgccacgt
     7081 aacccggata caggagcgca ttcgctttat ctggaataac gaagcacgca cgctgaaaaa
     7141 ctggcatcac gacacgggga aatacgggcg aaccatcacc gggtgggatg aggataaaaa
     7201 cagcatccgc acgttttacc gggatgacat cgaccgcttt ctggaaatac gcacccggcg
     7261 catcaaccag gacagcacaa agcgcgtccc catgttcgta aaactgcgca ccgcccgcta
     7321 cctgaaagcc cgtgcagatg cttccggtgt gacggtgggt tacagcggcg tggccgcacg
     7381 tattgcacgc gttcatcagt tcggtgagcg cgatcaggtt gcgccgggca ttttcaccga
     7441 ttacccggta cgtgagctgc tgggtatcag ccaggcagat gagcgcccga tttataacac
     7501 ggtgctgggc cggattgcag aggctgtacg gtgagcgcag aactcatgcg gctactgagc
     7561 aatatcatcc gcaccgggat catctctgaa gttgatgaga agtcctggcg cgtgcgcgtt
     7621 cgcagcggcg aactggaaac aggttggctg cgctggaaca ccactcgcgc gggagccttc
     7681 aatgtgtggc tgccgccatc accaggcgaa caggtggtaa ttgcctgcat tggcggcaac
     7741 ccggaaaccg ccatgataat tggcagcctg tggagtgatg ccattccggc ccccggcaaa
     7801 agcctgaaag aaatcgtggt cagcgcgccg gatggcgcgg tgttccgcta cgacgcggac
     7861 gcaggcgcac tgagcgccag cggcatgaaa acagccaccc tgcaggcatc cgtcagcgtg
     7921 acactggata cgcccgtcgt ggaatgcaca gaccttctga gaacggcgac gcttgacgtc
     7981 acaaaagggg gaaagatgag cggcaatatc acgcacagcg gcggcaattt cacctcaaac
     8041 ggcatcacag tgcatacgca taaacacggt ggcgttaaag gtggcagcga ttcgacagga
     8101 ggcccgcagt gacaacccgc tacacaggaa tgaacccgga cggaacggga aacctgaacg
     8161 atatggagca cctgaaacag tcagtcaggg acatcctgac caccccgctg gcaagccggg
     8221 ttatgcgacg ggaatatggc agccttgtgc ctgatttgat tgacgaaccc atgaataaca
     8281 ccacgcgtct gcaatgcatg agtgctgccg tgattgcgct gacacgatgg gaaccccgca
     8341 ttgccctgga cgctatcgac gttgtctgga aggcaggagg ccgcgccggg gtgacgctgt
     8401 cgggcactgt catgcagacc atgcagaatg ttgaattaac catcacgctg agggagtaaa
     8461 tcatgcctgc cgttgacctt tcacagttac cggaacccgc catcatcgcg gagcctgact
     8521 ttgaggcaat tctggctgac acaaaggcca tgatgattgc gtcctatccc gccgaacagc
     8581 gtgaagccgt ttccgccgcg ctggagctgg aatcggaacc ccttaacgtt atcgctcaaa
     8641 ccatgtcgtt tcgtgaaatg ctgttacgcc agcgggtcaa tgagggtgca cgcgcctgca
     8701 tgctaagcca cagcgccggg acagacctgg acaacctcgc gggcaatatg aacacaaagc
     8761 gcctggttat cactccggca acggatacca ccgatgcagt gatggaaagt gacacctcgc
     8821 tgagactacg ggcgcaacgg gcatatgacg gtctgagtgt tgctggcccg tcaggtgcat
     8881 acgagtattt tgcacgcagc gccagcggtc tggtacgcga tgcgcgggcc atcagcccgt
     8941 ctccggccaa cgtgacggtt tccatcctgt ccactgaggg cgacggcaca gcaacggagg
     9001 cgttgcttaa taccgttcgc gccgttctga atgcagagga tacccgcccg gtggccgacc
     9061 gcctgaccgt acagagtgcc agaatcgtga catggcggct gaatgcaaaa ctgtactttt
     9121 accccggccc ggaatccgaa cctattctgg ccgcggctga atcgtcgttc aggaagtggc
     9181 tggctgagca ggggcttatc ggtcaggacg tggcgttgtc cgccattgct gccgcactgc
     9241 atgtgcacgg tgtgcaacgc gtggagataa tcgaacccac acagaatatg gccatcagcg
     9301 acatacaggc ggcgcgctgt gagtcattca ccatcagcga aggtggacgc aatgagtaat
     9361 tcgttgttac caccatcagc cagcaatttc atgcgttgtg ccgaagccgt cggaacacgc
     9421 attacagaca ttccggtaga cctcaacacg ctgtggtcgc cggacacctg cccggtgcat
     9481 ctgctgcctt atctcgcctg ggcgttttcc gttgaccgct gggatcgcaa ctggccggaa
     9541 gagacaaagc gacaggttat tcgtgatgca tggctgatac accgacacaa agggaccatc
     9601 agcgcactgc gccgggccat tgagccgctg ggatacctca ttcgcgtgtc tgagtggtgg
     9661 gagttcggcg gagaaccggg aacatttacc gttgaagtcg gcacgctgga cagtggcgtg
     9721 acggaggaaa tgtatctgga aatggagcgg ttgattgctg atgcccgccc ggtcagccgc
     9781 cacatgacag ggctgaatat cattcaggaa attccggggg atattttcgc agcggcggca
     9841 acttatgacg gtgaagttat taccatttat ccaggcgatt aagcatgagt accacaacac
     9901 gaaaatttaa aaccattatc accgatacgg gtgcaaaaaa attagctcag gtagccgcgc
     9961 cagatggtaa gcctgtccgc ctgactcata tggccgtggg cgacggtggc ggcacgttgc
    10021 ccacaccaga cagtaagcag acccgtctgg tgcatgaggt gtggcgacat actgttaatc
    10081 gcgtcatcct ggacgcaaca catcagaacc gcattattgc ggagctggtt attcctcctg
    10141 aaacgggcgg attctggatc cgggaaattg gtgtatttga tgagcacggc gatttaatcg
    10201 cggtgggaaa tactgccgaa agttacaagc cagccgttgc cgaagggtcc ggtcgtgcac
    10261 aaacatttcg caccattctg accgtatcca gcactgccac cgtggcgctt accgtggaca
    10321 acaccatggt gatggccaca gtggattacg tggatgacaa actgaaagag catgaacagt
    10381 cacgacgtca cccggacgcc tcgctgaccg caaaaggctt tgttcaactc agtagcgcca
    10441 ctaacagcgt gtctgaaacg caggctgcaa cgccgaaagc agtaaaggcc gcgtatgatc
    10501 ttgctaacgg taaatatact gcgcaggatg ccagcacgac gcgaaaaggc cttgtccagc
    10561 tcagtagcgc caccaacagc acgtctgaaa cgcaggctgc aacgccgaaa gcagtaaagg
    10621 ccgcgtatga ccttgctaac gcaaaatata ccgctcagga cgccacgacg gcacaaaaag
    10681 ggatagtcca gctcagtagt gccaccaaca gcacgtctga aacactggcc gcgacatcga
    10741 aagcggttaa ggcggtaatg gatgaaacga acaagaaagc gcccttaaac agtcctgcgc
    10801 tgaccggaac gccaacaacg ccaactgcgc gacagggaac gaataatacc caaatcgcaa
    10861 gcacggcttt cgttatggct gcgattgccg cccttgtaga ttcgtcacct gacgcactga
    10921 atacgctgaa cgagttagcg gcggcgctgg gaaacgaccc gaattttgcg accaccatga
    10981 ctaacgcgct tgcgggtaag caaccgaaag atgccatcct gacggcgctg gccgggcttg
    11041 ctactgcggc agacaggttt ccgtatttta cggggaatga tgtcgccagc ctggcaaccc
    11101 tgacaaaagt cgggcgggat attcttgcga aatcgaccgt tgctgccgtt atcgaatacc
    11161 tcggtttaca ggaaacggta aacagggctg gtaacgccgt gcaaaaaaat ggcgatacct
    11221 tgtccggtgg gcttactttt gaaaatgact caatccttgc ctggattcga aatactgact
    11281 gggcgaagat tggatttaaa aatgatgccg atggtgacac tgattcatac atgtggtttg
    11341 aaacaggcga caacggcaat gaatatttca aatggagaag ccgccagagc accacaacaa
    11401 aagacctgat gacgctgaaa tgggatgcac taaatattct tgttaatgct gtcattaatg
    11461 gcagtcttgg agttggttcg acgaatgcgt taggtggtag ctctattgtt cttggtgata
    11521 atgacaccgg atttaaacag aatggagacg gtattctgga tgtttatgct aatagtcagc
    11581 gtgtattccg ctttcagaat ggagtggcta ttgcttttaa aaatattcag gccggggatg
    11641 gtaaaaaatt cacgctatcc agctccaaca acttcacaaa gaatgcaacg tttaatttat
    11701 ggggtgcttc aacccgtcca gtagttgcag agttaggcga tgaggcagga tggcatttct
    11761 atagccagcg aaatacagat aactcggtaa tattttctgt taacggtcag atacagccca
    11821 gcaactgggg gaattttgat tcacgctatg taaaagatgt tcgcctgggt acgcgtgttg
    11881 ttcaattgat ggcgcgtggt ggtcgttatg aaaaagccgg acacgcaatt accggattaa
    11941 gaatcattgg tgaagtagat ggcgatgatg aagccatctt cagaccaata caaaaataca
    12001 tcaatggcac atggtataac gtcgcacagg tgtaaattat gcagcattta aaaaatatta
    12061 agtccggaaa tccaaaaaca aaagaacaat atcagctaac aaagaatttt gatgttatct
    12121 ggttatggtc cgaagacggt aaaaactggt atgaggaagt aaataacttt caggacgaca
    12181 ccataaagat tgtatacgac gaaaataata ttattgttgc cataaccaaa gatgcctcaa
    12241 cgcttaatcc cgaaggcttt agtgtcgttg agattccaga tataacagcc aatcgtcgcg
    12301 ccgatgattc agggaagtgg atgtttaagg acggaactgt ggttaagcgg atttatacag
    12361 cagacgaaca gcaacaacag gccgaatcac aaaaggtcgc gttgctttct gaagctgaaa
    12421 gcgttattca gccactggaa cgcgctgtca ggctgaatat ggcgatggat gaggaacgca
    12481 cacgactgga gtcatgggaa cgctacagcg ttctggtcag ccgtgtggat acagcaaatc
    12541 ccgaatggcc acaaaagcct gagtaaaaat taaggcccaa tatcgggcct tctctcattc
    12601 tggttgttcg ggaaacgtta ctggcaggct ggaggtgtct gtagattcga ctttctgcgc
    12661 atagagcatc cactcggtta atttttgttt attctcgtcg gaaatgatgc ccagccgtag
    12721 ctgtgagtcc catagctggg ttttatccct gacaagttgc aacaggcttt gcttttcatt
    12781 ttccgcttgt tgcctctgct cttcctcggt ataagttcgc tttatcacta cgccatcttt
    12841 gaacaaccat ttccccgaaa tatcagcccg gcgatttgct gtaatatcag gtaattcaac
    12901 gacgcttgcg ccttccggat taattgctga aacatccttt tcaatacaaa taataacgcc
    12961 gttatggtca tagaccattt tcaaagtgtc tggctggaaa ttcttttgct cctcatacca
    13021 gttttttcca tcatctgaat aaagccattt gatgttaaat tgctttgtta gctggtattg
    13081 ctcttttgtt ttagggttgc cagcagtaat gttttttaag tgcatcatcg ttaaatactc
    13141 cccgcgttat accacgtccc attaatgcaa tactgaattg gccttgcctg tgttgtatca
    13201 attaattcat cacggtttcc gttaactgaa cccgtaacga cataacctga cctgtcagac
    13261 cagccgggac cattccatgt ctgaacagat gacagaccgc caaggcgaat acctgtaata
    13321 aaccttgagt tacattctgc ccgcgtatat gcaccaacat ctcccgctga aggttttcgt
    13381 gtcgtggtat agaaatctga ccaacctaat tca
//
LOCUS       DADMHM010000108        13303 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.109, whole genome shotgun sequence.
ACCESSION   DADMHM010000108 DADMHM010000000
VERSION     DADMHM010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13303)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13303)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13303
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.109"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..275
                     /locus_tag="JN125_002632"
     CDS             <1..275
                     /locus_tag="JN125_002632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872371.1"
                     /translation="IVVPLSTTRDHDKLNRGMHVEIASNVINGLQFFDQQIRWAKADL
                     VQQVSRNRLNRARTYRGYLNQCLPHELVADIQRAVIKSINAISLIN"
     gene            474..755
                     /gene="ppiC"
                     /locus_tag="JN125_002633"
     CDS             474..755
                     /gene="ppiC"
                     /locus_tag="JN125_002633"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004097481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PpiC"
                     /protein_id="HAY8872372.1"
                     /translation="MAKTAAALHILVKEEKLALDLLEQIKNGADFGKLAKKHSICPSG
                     KRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLYRN"
     gene            complement(842..2317)
                     /gene="ilvC"
                     /locus_tag="JN125_002634"
     CDS             complement(842..2317)
                     /gene="ilvC"
                     /locus_tag="JN125_002634"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HAY8872373.1"
                     /translation="MANYFNTLNLRQQLAQLGKCRFMGRDEFADGASYLQGKKVVIVG
                     CGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLV
                     VNLTPDKQHSDVVRTVQPLMKDGAALGYSHGFNIVEVGEQIRKDITVVMVAPKCPGTE
                     VREEYKRGFGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDL
                     MGEQTILCGMLQAGSLLCFDKLVEEGTDPAYAEKLIQFGWETITEALKQGGITLMMDR
                     LSNPAKLRAYALSEQLKEIMAPLFQKHMDDIISGEFSSGMMADWANDDKKLLTWREET
                     GKTAFETAPQYEGKIGEQEYFDKGVLMIAMVKAGVELAFETMVDSGIIEESAYYESLH
                     ELPLIANTIARKRLYEMNVVISDTAEYGNYLFSYACVPLLKPFMAELQPGDLGKAIPE
                     GAVDNAQLRDVNEAIRCHAIEQVGKKLRGYMTDMKRIAVAG"
     gene            2467..3357
                     /gene="ilvY"
                     /locus_tag="JN125_002635"
     CDS             2467..3357
                     /gene="ilvY"
                     /locus_tag="JN125_002635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator IlvY"
                     /protein_id="HAY8872374.1"
                     /translation="MDLRDLKTFLHLAESRHFGRSARAMHVSPSTLSRQIQRLEEDLG
                     QPLFVRDNRTVTLTEAGEELRVFAQQTLLQYQQLRHTIDQQGPSLSGELHIFCSVTAA
                     YSHLPPILDRFRAEHPSVEIKLTTGDAADAMEKVVTGEADLAIAGKPETLPGAVAFSM
                     LENLAVVLIAPALPCPVRNQVSSEKPDWSTVPFIMADQGPVRRRIELWFRRNKISNPM
                     IYATVGGHEAMVSMVALGCGVALLPEVVLENSPEPVRNRVMILERSDEKTPFELGVCA
                     QKKRLHEPLIEAFWKILPNH"
     gene            complement(3354..4898)
                     /gene="ilvA"
                     /locus_tag="JN125_002636"
     CDS             complement(3354..4898)
                     /gene="ilvA"
                     /locus_tag="JN125_002636"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase, biosynthetic"
                     /protein_id="HAY8872375.1"
                     /translation="MADSQPLSGAPEGAEYLRAVLRAPVYEAAQVTPLQKMEKLSSRL
                     DNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLG
                     VKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVPPFDHP
                     MVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSA
                     CLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKD
                     LFEDVRAVAEPSGALALAGMKKYIAQHNIRGERLAHILSGANVNFHGLRYVSERCELG
                     EQREALLAVTIPEEKGSFLKFCQLLGGRAVTEFNYRFADAKNACIFVGVRLSRGLEER
                     KEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRF
                     LNTLGTHWNISLFHYRSHGTDYGRVLAAFELGDHEPDFETRLNELGYDCHDETNNPAF
                     RFFLAG"
     gene            complement(4901..6751)
                     /gene="ilvD"
                     /locus_tag="JN125_002637"
     CDS             complement(4901..6751)
                     /gene="ilvD"
                     /locus_tag="JN125_002637"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HAY8872376.1"
                     /translation="MPKYRSATTTHGRNMAGARALWRATGMTDADFGKPIIAVVNSFT
                     QFVPGHVHLRDLGKLVAEQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIAD
                     SVEYMVNAHCADAMVCISNCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDQII
                     KLDLVDAMIQGADPKVSDSQSDQVERSACPTCGSCSGMFTANSMNCLTEALGLSQPGN
                     GSLLATHADRKQLFLNAGKRIVELTKRYYEQNDESALPRNIASKAAFENAMTLDIAMG
                     GSTNTVLHLLAAAQEAEIDFTMSDIDKLSRKVPQLCKVAPSTQKYHMEDVHRAGGVIG
                     ILGELDRAGLLNRDVKNVLGLTLPQTLEQYDVMLTQDDAVKNMFRAGPAGIRTTQAFS
                     QDCRWDTLDDDRANGCIRSLEHAYSKDGGLAVLYGNFAENGCIVKTAGVDDSILKFTG
                     PAKVYESQDDAVEAILGGKVVAGDVVVIRYEGPKGGPGMQEMLYPTSFLKSMGLGKAC
                     ALITDGRFSGGTSGLSIGHVSPEAASGGSIGLIEDGDLIAIDIPNRGIQLQVSDAELA
                     ARREAQEARGDKAWTPKNRERQVSFALRAYASLATSADKGAVRDKSKLGG"
     gene            complement(6816..7745)
                     /gene="ilvE"
                     /locus_tag="JN125_002638"
     CDS             complement(6816..7745)
                     /gene="ilvE"
                     /locus_tag="JN125_002638"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HAY8872377.1"
                     /translation="MTTKKADYIWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYD
                     SHKGPVVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIRKNNLTSAYIRPLIF
                     VGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAK
                     AGGNYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLFEVKDGVLFTPPFTSSAL
                     PGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSVDGIQVGEG
                     RCGPVTKRIQQAFFGLFTGETEDKWGWLDQVNQ"
     gene            complement(7765..8028)
                     /gene="ilvM"
                     /locus_tag="JN125_002639"
     CDS             complement(7765..8028)
                     /gene="ilvM"
                     /locus_tag="JN125_002639"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 small subunit"
                     /protein_id="HAY8872378.1"
                     /translation="MMQHQVNVSARFNPETLERVLRVVRHRGFHVCSMNMAAASDAQN
                     INIELTVASPRSVDLLFSQLNKLVDVAHVAICQSTTTSQQIRA"
     gene            complement(8025..9671)
                     /locus_tag="JN125_002640"
     CDS             complement(8025..9671)
                     /locus_tag="JN125_002640"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001012636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase 2 catalytic subunit"
                     /protein_id="HAY8872379.1"
                     /translation="MNGAQWVVHALRAQGVNTVFGYPGGAIMPVYDALYDGGVEHLLC
                     RHEQGAAMAAIGYARATGKTGVCIATSGPGATNLITGLADALLDSIPVVAITGQVSAP
                     FIGTDAFQEVDVLGLSLACTKHSFLVQSLEELPRIMAEAFDVASSGRSGPVLVDIPKD
                     IQLASGDLEPWFTTVENEVTFPHAEVEQARQMLAKAQKPMLYVGGGVGMAQAVPALRE
                     FLATTKMPATCTLKGLGAVEADYPYYLGMLGMHGTKAANFAVQECDLLIAVGARFDDR
                     VTGKLNTFAPHASVIHMDIDPAEMNKLRQAHVALQGDLNALLPELQQPLNINDWQQYC
                     AQLRDEHAWRYDHPGDAIYAPLLLKQLSDRKPADCVVTTDVGQHQMWAAQHIAHTRPE
                     NFITSSGLGTMGFGLPAAVGAQVARPNDTVVCISGDGSFMMNVQELGTVKRKQLPLKI
                     VLLDNQRLGMVRQWQQLFFQERYSETTLTDNPDFLMLASAFGIPGQHITRKDQVEAAL
                     DTMLNSDGPYLLHVSIDELENVWPLVPPGASNSEMLEKLS"
     gene            complement(9674..9724)
                     /locus_tag="JN125_002641"
     CDS             complement(9674..9724)
                     /locus_tag="JN125_002641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872380.1"
                     /translation="MNNSTKFCFSTFSTGN"
     gene            complement(9810..9908)
                     /gene="ilvL"
                     /locus_tag="JN125_002642"
     CDS             complement(9810..9908)
                     /gene="ilvL"
                     /locus_tag="JN125_002642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ilv operon leader peptide"
                     /protein_id="HAY8872381.1"
                     /translation="MTALLRVISLVVISVVVIIIPPCGAALGRGKA"
     gene            10259..11779
                     /locus_tag="JN125_002643"
     CDS             10259..11779
                     /locus_tag="JN125_002643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418214.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HAY8872382.1"
                     /translation="MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTKVGLPETTVKE
                     ARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGRYDLPIAIALLAASEQLTANKLD
                     EYGLVGELALTGALRGVPGAISSTTEAIKSGRKIIVAKDNEDEVELINGEGCLIADHL
                     QAVCAFLEGKHALERPKPTDAVSRALQHDLSDVIGQEQGKRGLEITAAGGHNLLLIGP
                     PGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLT
                     AMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITY
                     PARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPRI
                     LSKAVVPGESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAMWLEET
                     LIHLGLSIRAWQRLLKVARTIADIDQFDIITRQHLQEAVSYRAIDRLLIHLQKLLT"
     gene            complement(11804..12142)
                     /gene="maoP"
                     /locus_tag="JN125_002644"
     CDS             complement(11804..12142)
                     /gene="maoP"
                     /locus_tag="JN125_002644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrodomain Ori organization protein MaoP"
                     /protein_id="HAY8872383.1"
                     /translation="MAESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGYAFNE
                     LDLGKREPVTEEEKLFVAVCRGEREPVTEAERVWSKYMTRIKRPKRFHTLSGGKPQVE
                     GAEDYTDSDD"
     gene            12261..13100
                     /gene="hdfR"
                     /locus_tag="JN125_002645"
     CDS             12261..13100
                     /gene="hdfR"
                     /locus_tag="JN125_002645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator HdfR"
                     /protein_id="HAY8872384.1"
                     /translation="MDTELLKTFLEVSRTRHFGRAAESLYLTQSAVSFRIRQLENQLG
                     VNLFTRHRNNIRLTAAGEKLLPYAEMLMSTWQAARKEVAHTSRHNEFSIGASASLWEC
                     MLNQWLGRLYQNQDAHTGLQFEARIAQRQSLVKQLHERQLDLLITTEAPKMDEFSSQL
                     LGYFTLALYTSAPSKLKGDLNYLRLEWGPDFQQHEAGLIGADEVPILTTSSAELAQQQ
                     IAMLNGCTWLPVSWARKKGGLHTVVDSTTLSRPLYAIWLQNSDKNALIRDLLKINVLD
                     EVY"
     gene            complement(13196..13271)
                     /locus_tag="JN125_002646"
     tRNA            complement(13196..13271)
                     /locus_tag="JN125_002646"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13236..13238),aa:Trp,seq:cca)
BASE COUNT         3079 a         3598 c         3453 g         3173 t
ORIGIN      
        1 gtatcgtcgt tccattatca accactcgcg atcatgacaa gttaaatcgt ggaatgcatg
       61 ttgaaatagc cagtaatgtt atcaatggcc tgcaattctt tgatcagcag attcgttggg
      121 ccaaagccga cctggtacaa caagtcagtc gaaaccgatt aaatagagca aggacttaca
      181 gagggtatct taatcaatgt ttgccacatg agttggttgc agacatacag agggcggtca
      241 tcaagtcaat caatgccata tcgctcataa attgacaata aaataaccat ccccgataat
      301 gactttgtag cccatagagg ccctaagttt tctccccttg agggacctgc gaagcccgga
      361 ttttccgggc ttttgccata tatgtaccag cccctccctg actgacaatt acgttagcat
      421 ctgcggatca tgctaaaatc gccgcctgac aattattcac tcaaggcacg atcatggcaa
      481 aaacagcagc agcactgcat atccttgtaa aagaagagaa actggctctg gatcttctcg
      541 agcagattaa gaacggtgcc gatttcggca agctggcgaa gaaacactcc atttgcccat
      601 caggcaaacg cggcggtgat ttaggtgaat tccgccaggg tcagatggtt ccggcgttcg
      661 ataaagttgt gttctcttgt ccggtactgg agccgaccgg cccgctgcac acccagttcg
      721 gttaccacat cattaaggtg ctgtaccgta actaatagca aggccttctc ctggagaagg
      781 ccttgagtgt tttctccctc tccctgtggg agagggtcgg ggtgaggaca tcagcgcgca
      841 cttaacccgc aactgcaata cgtttcatat ccgtcatata gccgcgcagt ttcttaccta
      901 cctgctcaat cgcatggcag cgaatcgctt cgttcacatc acgcagttgc gcgttatcta
      961 ccgcaccttc cggaatagct ttacccagat cgcccggttg cagctctgcc ataaacggtt
     1021 tcagcaacgg cacacaagcg taagagaaca gatagttacc gtactcagcg gtatcagaga
     1081 taaccacgtt catttcgtac agacgcttac gggcgatggt gttggcaatc agcggcagct
     1141 cgtgcagtga ttcataatat gcagactctt caatgatgcc ggaatcgacc atggtttcaa
     1201 acgccagctc aacgcccgct ttcaccatcg cgatcatcag tacgccttta tcgaagtact
     1261 cctgctcgcc gattttgcct tcatactgcg gcgcggtttc gaaggcggtt ttgccggtct
     1321 cttcacgcca ggtcagcagt ttcttatcat cgttggccca gtccgccatc ataccggagg
     1381 agaattcgcc ggagatgatg tcgtccatat gtttctggaa caggggtgcc atgatctctt
     1441 tcagctgttc agacagcgcg taagcacgca gtttcgccgg gttagagaga cggtccatca
     1501 tcagggtgat gccgccctgc ttcagcgctt cggtgatggt ttcccaaccg aactgaatta
     1561 gtttttctgc gtatgccgga tcggtgccct cttccaccag cttgtcgaag cacagcagcg
     1621 agccagcctg caacataccg cacaggatgg tttgctcacc catcaggtca gatttcactt
     1681 ccgcaacgaa ggacgattcc agcacgcccg cacggtgacc accggttgct gccgcccatg
     1741 ctttagcgat cgccatgcct tcgcctttcg gatcgttttc cgggtgaacg gcaatcagcg
     1801 tcggtacgcc gaatccacgt ttgtactctt cacgcacttc ggtgccaggg catttcggcg
     1861 caaccatgac tacggtgatg tctttacgga tctgctcgcc cacttcgacg atgttgaaac
     1921 cgtgcgagta acccagcgcc gcgccgtctt tcatcagtgg ctgtacggtg cgcactacgt
     1981 cggagtgctg cttgtctggc gtcaggttaa ccaccagatc cgcctgcggg atcagttctt
     2041 cgtaagtgcc cactttaaaa ccgttttcgg tcgctttacg ccaggatgcg cgcttctcgg
     2101 caatcgcttc tttacgcaga gcgtaggaga tatcgagacc agaatcacgc atgttcaggc
     2161 cctggttcag cccctgtgcg ccacagccga cgataaccac ttttttaccc tgaaggtagc
     2221 tcgcgccgtc ggcgaattcg tcgcgcccca taaagcgaca tttgcccagc tgtgccagct
     2281 gctggcgcag gttcagtgta ttgaagtagt tagccatggt gattcctcgt gatgttgtgc
     2341 ttcttattgt tcggttcgcg tttgcgagat tgaattcact atatgacagg aaatttattg
     2401 cggaaattga tatattcaca acgtcacatt gcaatttctg cgacgtcaac attgagggct
     2461 gctccattgg atttacgcga tctgaaaacc ttcctgcatc tggcggaaag ccgccatttt
     2521 ggccgcagcg cgcgggcgat gcacgttagc ccatccacgc tctcacggca gattcagcgc
     2581 ctggaagaag atcttggtca gccgctattt gtgcgcgata accgcacggt gacgctgact
     2641 gaagcgggcg aagagctgcg cgttttcgcc cagcaaacgc tgttgcagta tcagcagttg
     2701 cgccacacca tcgatcagca agggccgtcg ctctctggcg aattacatat cttctgctcg
     2761 gtgaccgctg cctacagcca tctgccaccg attctcgacc gcttccgcgc ggaacacccg
     2821 tcggtggaga tcaaactaac cactggtgat gcggcagatg cgatggaaaa ggtagtcact
     2881 ggcgaagcgg atctggcgat tgccgggaaa ccggagactc tgcccggcgc agtggcgttt
     2941 tcgatgctgg agaatctggc agtagtgctg attgcgcccg cgctgccctg cccggtgcgt
     3001 aaccaggttt cgtcagagaa gccggactgg tctacagtgc cgtttatcat ggccgatcag
     3061 ggaccggtac gccgccgcat tgaactgtgg tttcgacgca ataaaatcag caacccgatg
     3121 atttacgcca cggttggcgg gcatgaagcg atggtatcga tggtggcgct cggctgtggc
     3181 gtggcgctgt tgccggaagt agtgctggaa aacagccccg aaccggtgcg taaccgcgtg
     3241 atgattttag agcgcagcga tgaaaaaacg ccgtttgaac tgggcgtttg tgcgcagaaa
     3301 aagcggctgc atgagccgct gattgaggcg ttctggaaga ttttgccgaa ccattaaccc
     3361 gccaaaaaga acctgaacgc cggattattg gtttcgtcgt ggcaatcgta gcccagctca
     3421 tttagccggg tttcgaaatc cggttcatgg tcgccgagtt cgaacgccgc cagtacgcgc
     3481 ccgtagtcgg tgccatggct gcgatagtgg aacaaagaaa tgttccagtg cgtacccagc
     3541 gtgttgagga agcgcagcag cgcgcccggt gattccggga attcgaagct gtagaggcgt
     3601 tcctgcaacg gatgtgacgg acgcccgccg accatatagc gcacatgcaa cttcgccatt
     3661 tcgtcgtcgg agagatccac cacgctgtag ccgccgtcgt tgagcatctg caaaatttct
     3721 ttgcgctctt cgaggccgcg gctcaggcgc acgccgacaa agatgcaggc gtttttggca
     3781 tcggcaaaac ggtagttgaa ctcggtgacc gctcgcccgc caagcagttg gcagaatttg
     3841 aggaagctgc ctttttcttc cggaatggtc accgccaaca acgcttcacg ctgttcgccc
     3901 agttcgcagc gttccgagac gtagcgcagg ccgtggaagt tcacgttggc accggaaaga
     3961 atatgcgcca gccgttcgcc gcgaatgttg tgctgggcga tatatttttt cattcccgcc
     4021 agcgccagcg cgccagaggg ttccgccacc gcgcgcacat cttcgaataa atccttcatc
     4081 gccgcacaga tcgcatcact atcgacggtg atgatgtcgt cgagatactc ctggcataaa
     4141 cggaaggttt cgtcaccgat gcgttttacc gctacgcctt cagcaaatag ccctacgcgc
     4201 ggcagatcaa ccggatgacc cgcatccagc gctgctttca ggcaggcgga gtcttccgct
     4261 tctacggcga tcactttgat ttgtggcatc agttgtttga tcagcaccgc aacgcccgcc
     4321 gccagaccgc cgccgccgac tggcacaaat acgcggtcga gatgggcgtc ctgctggagc
     4381 agttccagcg ccagcgtgcc ttgcccggca atcaccatcg gatggtcgaa cggcggcacc
     4441 caggtgaacc cctgctgctg tgacagttcg atcgctttag ctttcgcttc gtcaaagttc
     4501 gcgccatgaa gcagcacttc gccgccgaat ccacgtaccg catcgacttt gatatcggcg
     4561 gtggcggttg gcataacgat cagggccttc acgcctaacc gcgcagaaga aaacgcgacg
     4621 ccctgcgcgt ggttacccgc agaagcagtg atcacgccgt gcgctttttg ttcttccgtc
     4681 aggcccgcca tcatggcgta tgcgccgcgc agcttaaagc tgtgcactgg ctggcgatct
     4741 tcgcgcttca ccagaatgac gttatcaaga cgcgacgaca gtttttccat tttttgtagc
     4801 ggcgtaacct gcgctgcctc gtaaaccggc gcgcgcagca ctgctcttaa atattcggca
     4861 ccttccggag caccggacag gggttgcgag tcagccatta ttaacccccc agtttcgatt
     4921 tatcgcgcac cgcacctttg tcggcgctgg ttgccaggct ggcgtaggcg cgcagggcaa
     4981 aggaaacctg acgttcacgg tttttcggcg tccaggcttt gtcaccccga gcttcctgcg
     5041 cttcacgacg cgccgccagt tcggcatcgc ttacctgtaa ctgaatgcca cggttcggga
     5101 tgtcgatagc gatcaggtca ccatcttcaa tcagaccaat gctgccgccg cttgccgctt
     5161 ccggtgagac gtggccgatg gaaagaccag aggtgccgcc agagaaacga ccgtcggtga
     5221 tcagcgcaca ggctttaccg agacccattg atttcaggaa gctggttggg tagagcattt
     5281 cctgcatgcc agggccgcct ttcgggcctt catagcggat caccaccaca tcgcccgcga
     5341 caactttgcc accgaggatc gcttctaccg cgtcgtcctg gctttcgtac acttttgccg
     5401 ggccggtgaa tttgaggatg ctgtcatcga cgcccgcggt tttcacgatg cagccgtttt
     5461 cagcaaaatt accgtagagc accgccaggc cgccgtcttt gctgtaggcg tgttccagcg
     5521 agcggataca gccgtttgcg cgatcgtcgt ccagcgtatc ccaacggcaa tcttgcgaga
     5581 atgcctgggt ggtacggata cccgcagggc cggcgcggaa catatttttt accgcgtcat
     5641 cctgggtcag cataacgtcg tattgctcca gcgtttgcgg caacgtcagg ccgagcacgt
     5701 ttttcacatc acggttcagt aaccccgcgc gatccagttc gccgagaata ccgataacac
     5761 caccagcacg gtgaacatct tccatatggt atttctgggt gctcggcgca actttacaca
     5821 gctgtggaac cttgcgggaa agcttatcga tatcactcat ggtgaagtcg atttccgctt
     5881 cctgcgccgc cgccagcagg tgaagtacgg tgttagtcga tccacccatc gcgatatcca
     5941 gcgtcatggc gttttcaaac gccgccttac tggcgatatt acgcggcagt gcactttcgt
     6001 cgttttgctc gtaataacgt ttggtcaatt caacaatgcg tttaccagca ttaaggaaca
     6061 gctgcttacg gtccgcgtgg gttgccagca gcgagccgtt gcctggctgc gacaaaccca
     6121 gcgcttcggt caggcagttc attgagttag cggtaaacat cccggagcag gaaccgcagg
     6181 ttgggcaggc ggaacgttca acctgatcgc tctgggagtc agaaactttc gggtctgcgc
     6241 cctggatcat cgcatcaacc agatcgagtt tgattatctg atcggacagt ttggttttcc
     6301 cggcctccat cgggccgccg gaaacaaaga tcaccggaat attcaggcgc agggaagcca
     6361 tcagcatccc cggggtgatt ttgtcgcagt tagagatgca gaccatggcg tcggcgcagt
     6421 gggcgttgac catatactca acggaatcag cgatcagttc gcgagatgga agtgaataaa
     6481 gcatcccccc gtggcccatg gcaatcccat catccaccgc aatggtgttg aactctttgg
     6541 caacgccgcc agccgcttca atttgttcgg cgaccagttt accgagatcg cgcagatgga
     6601 cgtgacccgg tacaaattgg gtgaacgagt tcacaaccgc gataatcggc ttgccaaaat
     6661 cggcgtcggt cattccggtg gcgcgccaca gcgcacgagc acccgccata ttacgaccat
     6721 gagtggtggt ggcggaacgg tacttaggca tactttattt actcccagtg tctgtctcgt
     6781 aaatgggacg gtgcgtgccg tcccattttt tgtatttatt gattaacttg atctaaccag
     6841 ccccatttat cttcggtttc gccagtgaag aggccgaaga aggcttgctg aatgcgtttg
     6901 gtaaccgggc cacaacggcc ttcgccaacc tgaataccgt ctacgctgcg cactggcgtg
     6961 atttctgccg cagtaccgga cataaacact tcatccgcca ggtacaggga ttcgcgcgac
     7021 agcacctgct cacgcacttc aattcccagc tctttcgcca gtttgatgat ggcatcacgg
     7081 gtaatacccg gcagcgcgga tgaggtaaac ggtggggtga acagcacgcc gtctttcact
     7141 tcaaacaggt tttcacctgc gccttcagag atgtaaccgt tcacatccag cgcgatacct
     7201 tcctgataac cgtggcggcg cgcttcgcta cccaccagca gggaagagag gtagttacca
     7261 ccggcttttg ccgccgtcgg gatggtgttt ggtgctgcgc ggttccagga ggaaaccatc
     7321 gcatcgatcc cctgctccag cgcttctgcg cccaaatacg ctccccacgg gaaagcagcg
     7381 ataatcacgt cggttgagta tcccgctggc gggtttactc ccatgccaac atcaccgacg
     7441 aagatcagcg gacggatata ggcgctggtg agattatttt tgcggatcac gtcacgacaa
     7501 gcttccatca gctcatcaat gctctgcgaa accgggaagc gatagatttt ggcggagtca
     7561 tgcagacgct gcatatgctc acgatggcgg aatacaaccg gtcctttgtg cgagtcgtag
     7621 caacggatgc cttcaaaaac cgaagtgcca tagtgcagcg cgtgcgacat cacatgcacc
     7681 ttcgcgtctt cccagcgaac catctcccca ttgaaccaaa tgtaatcagc tttcttcgtg
     7741 gtcattttta tattcctttt gcgctcaggc gcggatttgt tgtgatgtgg ttgtgctctg
     7801 gcagatggca acgtgtgcga cgtccaccag tttatttaac tgactaaaca gtaagtcgac
     7861 cgaccgtggg ctggcaacgg tcaattcgat atttatattt tgtgcatcgc tggcggcggc
     7921 catattcatt gagcagacgt ggaaaccacg atgacgcacc acgcgtaaaa cacgttctaa
     7981 ggtttccgga ttgaagcgag ccgatacatt gacctgatgt tgcatcatga taatttctcc
     8041 aacatttctg aattactggc gccaggcggc accagcggcc agacgttctc aagttcgtcg
     8101 attgagacat gaagcaggta tggcccatca ctgttcagca tggtgtcgag tgccgcttca
     8161 acctggtctt tacgggtgat gtgttggcca gggatgccga aggcgctggc taacatgagg
     8221 aaatcggggt tatcagtaag ggtggtttcg ctgtatcgtt cctgaaaaaa cagttgctgc
     8281 cattgtcgaa ccatccctaa ccgttggtta tcgagtaaga cgattttcaa cggtaactgc
     8341 ttgcgtttta cggtgcccag ctcttgcaca ttcatcatga aagagccgtc accggagata
     8401 cagacgacgg tatcgttcgg tcgcgcgact tgtgcgccaa ccgccgctgg taaaccaaaa
     8461 cccatagtgc ctaagccgct ggaggtgatg aaattttccg ggcgagtgtg ggcgatgtgt
     8521 tgcgcagccc acatctggtg ctgccccaca tctgtggtca cgacgcaatc cgcaggttta
     8581 cgatccgaca gttgttttaa caacaacggc gcgtagattg cgtcgccggg atggtcgtaa
     8641 cgccaggcat gttcatcacg cagctgcgcg cagtattgct gccagtcatt gatatttaac
     8701 ggctgctgta attctggtaa cagagcattt aaatcacctt gtaatgccac atgtgcctga
     8761 cgcagcttgt tcatttctgc cgggtcgata tccatatgga taacgctggc gtgtggtgcg
     8821 aaggtgttca gtttgccggt cacccggtca tcaaaacgtg cacccacggc gatcagcaag
     8881 tcgcactcct gcaccgcgaa gttcgccgct ttggtgccat gcattcccag catgcccaga
     8941 tagtacggat aatctgcttc aactgcgccc agccctttca gcgtgcaggt ggcaggcatt
     9001 tttgtggtag cgagaaattc tcgtaaagca ggaactgcct gcgccatacc cacgccacca
     9061 ccaacgtaca gcatcggttt ttgcgctttt gccagcatct ggcgcgcttg ctcaacttcg
     9121 gcatgtggga aagtcacttc gttttcaacg gtggtgaacc acggttccag gtcaccgctg
     9181 gctagctgga tatcttttgg gatatcgacc agaaccggac cagaacgacc tgagctggca
     9241 acgtcgaatg cttcagccat aatgcgcggc aactcttcca gcgactgcac cagaaagctg
     9301 tgcttggtac aggctaacga caatcccagg acatccactt cctgaaatgc atcagtgccg
     9361 ataaacggtg cggacacttg accggtgatg gcaacaacag ggatagaatc taacagtgcg
     9421 tccgcaagcc cggttatcag gttggttgcg cccggaccag acgtggcgat acatacgcca
     9481 gttttgccgg tagcacgggc ataaccgata gccgccattg ccgcaccctg ctcatgtcgg
     9541 cacagcaagt gctccacgcc gccgtcatac aatgcatcgt aaaccggcat aattgcgcca
     9601 cccggataac cgaaaacggt gttcacaccc tgtgcccgca acgcatgtac cacccactgt
     9661 gcgccattca tagttagttc cccgtgctga atgttgagaa acagaatttt gtgctgttat
     9721 tcattgtctg ctcctcggtt atgtttttaa ggtcaaaaaa aaccccggac ctttcggtgc
     9781 ggggggctta gttcgttaag gcttgatttc taagcctttc ctcgtccaag tgcagccccg
     9841 cacggtggga taataatcac caccacgcta atcacgacca ggctaatcac tcgtagaagg
     9901 gctgtcattt tgtcttttct tgcatcttgt tcgaaggaat gcctaaagag ttaccatagg
     9961 ttttgtaaat agtacaagat attttttgtc cgatttttat gatgcgttta ataatttcaa
    10021 tataagttgt tgttttttaa aataaaatag tgagtaaaaa aattcaattt cagtatgaat
    10081 gttgttccct tcctcgttgt tcatcctttg tccgctgcat ttttgcgagc atcattccac
    10141 cgccagaaca actcaacttc acttgcacaa ataaacagga atcagccact aaaattcacg
    10201 aattagcggg ctacagcagc gatatcttat gcacataatg gttactcaag gagggcttat
    10261 gtcactgtca attgttcata cccgcgcagc cctgggagta aatgcgcccc cgatcactgt
    10321 tgaggtacat atcagtaaag gtctacccgg cttaacgaag gtgggcttac cagaaacaac
    10381 ggtaaaagaa gctcgcgatc gcgtgcgcag cgccattatc aatagcggat atgaatatcc
    10441 ggcgaaaaaa atcaccatca acctggctcc agctgatctg ccaaaagaag ggggacgata
    10501 tgatttacct atcgccattg cgttgctggc ggcctcagaa cagcttacag ccaataagtt
    10561 agatgaatat ggattagtcg gagaactggc gcttacaggc gctctgcgtg gcgttcccgg
    10621 cgcaatctcc agtacaactg aagctattaa gtcgggcaga aaaattatcg tcgcgaaaga
    10681 taacgaagat gaagtggagc taattaacgg tgaaggatgc ctgatagccg atcatctgca
    10741 agctgtctgt gcgtttctgg aaggtaagca cgctctcgaa cgcccgaaac caactgatgc
    10801 agtatcccgg gcgctacaac atgatctcag tgatgttatc ggtcaggaac aaggaaagcg
    10861 agggctggaa attaccgccg ctggcgggca caacctttta ctgattgggc cgccgggaac
    10921 aggtaaaaca atgctcgcca gccgtattaa tggcctgtta ccagatttaa gcaatgaaga
    10981 ggcactggag agtgctgcga tattaagtct ggtaaatgct gaatcagtac aaaaacaatg
    11041 gcggcagcgc ccgttccgct cacctcatca cagtgcatcg ttaactgcga tggtaggcgg
    11101 tggcgcaatt ccagggcccg gtgaaatttc gctggcgcat aacggcgtgc tttttcttga
    11161 tgagttacct gaatttgaaa ggcgtacact ggatgccttg cgagagccga ttgaatccgg
    11221 gcagatccat ctttcacgca cgcgagcaaa aataacctat ccagcccgtt tccagcttgt
    11281 cgcggcgatg aatcccagcc ctaccggaca ttatcaggga aaccataacc gctgcacacc
    11341 agagcaaacg ctgcgttatc tcaaccgact ctctggtccc tttctcgacc gcttcgatct
    11401 ctcactggag atcccattac cgcctccccg tattttgagt aaagcggtag tgccgggaga
    11461 aagcagcgcc accgttaaac aacgcgtaat ggccgccaga gagcgccaat ttaagcggca
    11521 gaataaactg aacgcctggc tggatagtcc ggaaatacgc caattctgca aacttgagag
    11581 cgaagatgcg atgtggctgg aagaaacgct gatccatctg gggttatcga ttcgtgcctg
    11641 gcagcggtta ttgaaagttg cacgaaccat tgctgatatt gatcagtttg acattatcac
    11701 acgtcaacat ttgcaggagg cagttagcta tcgagcgatt gaccgtttgc tcatccatct
    11761 gcagaaacta ctgacataaa aaaagggcat ttcgcccttt ttattaatcg tcagaatcgg
    11821 tgtagtcttc agcaccttca acctgcggtt taccgccgga aagggtgtga aaacgttttg
    11881 gacgcttaat acgcgtcata tacttggacc acacgcgttc tgcttctgtc actggctcac
    11941 gttcgccacg gcatactgct acgaagagtt tctcttcctc ggtaaccggc tcgcgtttgc
    12001 caagatccaa ctcattgaag gcataaccat gacgctcaag cagttgtgcc tctttgatgg
    12061 tgaaatcacc atgacgagag aatccacgtg gataatgttt attgtcgaaa tatcgattag
    12121 tcgtcgtaaa gctttccgcc atcctgcacg ctcctaattc tttgaccgag ctagttatgg
    12181 cgcggagtat tagttacgct tgacagagtg taaaacaaaa catttaaatc ataacgacaa
    12241 ataattttgc ggagagcact gtggatacgg aattgttaaa aactttcctg gaagttagcc
    12301 gaacgcgtca ctttggtcga gcggctgaat cgctctatct gacccagtca gcagtgagct
    12361 ttcgaatcag acaactggaa aatcaactgg gtgtgaacct tttcacccgc cacagaaaca
    12421 atatccgttt aaccgctgcc ggtgaaaaac tactgcctta tgcagaaatg ctcatgagca
    12481 cctggcaggc cgcccgcaag gaggtggcgc atacctcacg acataacgag ttttctatcg
    12541 gtgccagcgc ctcattgtgg gaatgtatgc ttaatcagtg gctgggacgt ttgtatcaaa
    12601 atcaggatgc ccatacaggc ttacagttcg aagcgcgaat tgcccaacgg cagtctctgg
    12661 taaaacagct gcatgaacgc cagcttgatc ttcttattac cactgaagcg cccaaaatgg
    12721 acgaatttag tagtcagttg ctgggatatt tcactttagc gctttatacc agtgcccctt
    12781 caaaactaaa gggagatctt aattatctgc gacttgagtg ggggccagat tttcaacagc
    12841 atgaggcagg tttgatcggt gctgacgaag tgcccattct gacaaccagt tctgctgaac
    12901 tggcacagca acagattgcg atgcttaatg gttgcacctg gctacccgtc agctgggcgc
    12961 gtaaaaaagg cggcctgcat accgttgtcg atagcacaac actttcacgg ccgctttatg
    13021 ccatatggct gcaaaatagc gataaaaatg cgttgattcg cgatcttttg aaaattaacg
    13081 tgctggatga agtgtattaa tatgaatggc tggcaaggat gccggtagaa ggatttactt
    13141 cggagagggt tatttcagat aaaaaaaatc cttagctttc gctaaggatg atttctggca
    13201 ggggcggaga gactcgaact cccaacaccc ggttttggag accggtgctc taccaattga
    13261 actacgcccc taattagggt ggcggaacgg acgggactcg aac
//
LOCUS       DADMHM010000109        13176 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.110, whole genome shotgun sequence.
ACCESSION   DADMHM010000109 DADMHM010000000
VERSION     DADMHM010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13176)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13176)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13176
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.110"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(117..1367)
                     /gene="icd"
                     /locus_tag="JN125_002647"
     CDS             complement(117..1367)
                     /gene="icd"
                     /locus_tag="JN125_002647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000444467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HAY8872385.1"
                     /translation="MESKVVVPAQGKKITLQNGKLNVPENPIIPYIEGDGIGVDVTPA
                     MLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETLDLIREYRVAIKGP
                     LTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIY
                     AGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAI
                     ANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIV
                     IKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECAL
                     FEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTVTYD
                     FERLMEGAKLLKCSEFGEAIIENM"
     gene            1539..2192
                     /gene="rluE"
                     /locus_tag="JN125_002648"
     CDS             1539..2192
                     /gene="rluE"
                     /locus_tag="JN125_002648"
                     /EC_number="5.4.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309634.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2457) synthase RluE"
                     /protein_id="HAY8872386.1"
                     /translation="MRQFIISENTMQKTSFRNHLVKRFSSQRSTRRKPENQPTRVILF
                     NKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPG
                     KRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRER
                     KSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYTLDNLANGEWREATE"
     gene            2202..2663
                     /gene="nudJ"
                     /locus_tag="JN125_002649"
     CDS             2202..2663
                     /gene="nudJ"
                     /locus_tag="JN125_002649"
                     /EC_number="3.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase NudJ"
                     /protein_id="HAY8872387.1"
                     /translation="MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETL
                     VEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDID
                     CCRWVSAEEILKASNLRSPLVAESIRCYQSEQRYPLEMIGDFNWPFTKGVI"
     gene            2717..3823
                     /gene="mnmA"
                     /locus_tag="JN125_002650"
     CDS             2717..3823
                     /gene="mnmA"
                     /locus_tag="JN125_002650"
                     /EC_number="2.1.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HAY8872388.1"
                     /translation="MSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDD
                     GEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWNNVFELFLAEYKAGRTPNPDILC
                     NKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSH
                     EQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQP
                     GKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILVVAQG
                     HEHPRLMSVGLIAQQLHWVDREPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFD
                     EPVAAVTPGQSAVFYNGEVCLGGGIIEQRLPLPV"
     gene            3859..4500
                     /gene="hflD"
                     /locus_tag="JN125_002651"
     CDS             3859..4500
                     /gene="hflD"
                     /locus_tag="JN125_002651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="high frequency lysogenization protein HflD"
                     /protein_id="HAY8872389.1"
                     /translation="MAKNYYDITLALAGICQSARLVQQLAHQGHCDADALHVSLNSII
                     DMNPSSTLAVFGGSEANLRVGLETLLGVLNASSRQGLNAELTRYTLSLMVLERKLSSA
                     KGALDTLGNRINGLQRQLEHFDLQSETLMSAMAAIYVDVISPLGPRIQVTGSPAVLQS
                     PQVPAKVRATLLAGIRAAVLWHQVGGGRLQLMFSRNRLTTQAKQILAHLTPEL"
     gene            4504..5874
                     /gene="purB"
                     /locus_tag="JN125_002652"
     CDS             4504..5874
                     /gene="purB"
                     /locus_tag="JN125_002652"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006819529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HAY8872390.1"
                     /translation="MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWL
                     QKLAAHAAIKEVPAFAADAIGYLDAIVANFSEEDAARIKTIERTTNHDVKAVEYFLKE
                     KVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGIKDLAVQ
                     YRDIPLLSRTHGQPATPSTIGKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHI
                     AAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVW
                     GYIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQ
                     RDLTDSTVLRNLGVGIGYALIAYQSTLKGVSKLEVNRDHLLDELDHNWEVLAEPIQTV
                     MRRYGIEKPYEKLKELTRGKRVDAEGMKQFIDGLALPEEEKARLKAMTPANYIGRAIT
                     MVDELK"
     gene            6042..6713
                     /gene="phoP"
                     /locus_tag="JN125_002653"
     CDS             6042..6713
                     /gene="phoP"
                     /locus_tag="JN125_002653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator PhoP"
                     /protein_id="HAY8872391.1"
                     /translation="MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHL
                     PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKP
                     FHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMET
                     LIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY
                     LFELR"
     gene            6713..8173
                     /gene="phoQ"
                     /locus_tag="JN125_002654"
     CDS             6713..8173
                     /gene="phoQ"
                     /locus_tag="JN125_002654"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     PhoQ"
                     /protein_id="HAY8872392.1"
                     /translation="MKKLLRLFFPLSLRVRFLLATAAVVLVLSLAYGMVALIGYSVSF
                     DKTTFRLLRGESNLFYTLAKWENNKLHVELPENIDKQSPTMTLIYDENGQLLWAQRDV
                     PWLMKMIQPDWLKSNGFHEIEADVNDTSLLLSGDHSIQQQLQEVREDDDDAEMTHSVA
                     VNVYPATSRMPKLTIVVVDTIPVELKSSYMVWSWFIYVLSANLLLVIPLLWVAAWWSL
                     RPIEALAKEVRELEEHNRELLNPATTRELTSLVRNLNRLLKSERERYDKYRTTLTDLT
                     HSLKTPLAVLQSTLRSLRSEKMSVSDAEPVMLEQISRISQQIGYYLHRASMRGGTLLS
                     RELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEISFVGEQNDFVEVMGNVLDNACK
                     YCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAR
                     EITEQYEGKIVAGESMLGGARMEVIFGRQHSAPKDE"
     gene            8249..9370
                     /locus_tag="JN125_002655"
     CDS             8249..9370
                     /locus_tag="JN125_002655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309600.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HAY8872393.1"
                     /translation="MEYQLTLNWPDFLERHWQKRPVVLKRGFNNFIDPISPDELAGLA
                     MESEVDSRLVSHQDGKWQVSHGPFESYDHLGETNWSLLVQAVNHWHEPTAALMRPFRE
                     LPDWRIDDLMISFSVPGGGVGPHLDQYDVFIIQGTGRRRWRVGEKLQMKQHCPHPDLL
                     QVDPFEAIIDEELEPGDILYIPPGFPHEGYALENAMNYSVGFRAPNTRELISGFADYV
                     LQRELGGNYYSDPDVPPRAHPADVLPQEMDKLREMMLELINQPEHFKQWFGEFISQSR
                     HELDIAPPEPPYQPDEIYDALKQGDVLVRLGGLRVLRIGDDVYANGEKIDSPHRPALD
                     ALASNIALTAENFGDALEDPSFLAMLAALVNSGYWFFEG"
     gene            complement(9419..10645)
                     /gene="pepT"
                     /locus_tag="JN125_002656"
     CDS             complement(9419..10645)
                     /gene="pepT"
                     /locus_tag="JN125_002656"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HAY8872394.1"
                     /translation="MDKLLERFLNYVSLDTQSKAGVRQVPSTEGQWKLLHLLKEQLEE
                     MGLINVTLSEKGTLMATLPANVPGDIPAIGFISHVDTSPDCSGKNVNPQIVENYRGGD
                     IALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGIAEIMTALAVLQQKNI
                     PHGDIRVAFTPDEEVGKGAKHFDVDAFDARWAYTVDGGGVGELEFENFNAASVNIKIV
                     GNNVHPGTAKGVMVNALSLAARIHAEVPADESPEMTEGYEGFYHLAGMKGTVERADMH
                     YIIRDFDRKQFEARKCKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREKVVEHPHILD
                     IAQQAMRDCDIEPELKPIRGGTDGAQLSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEK
                     AVQVIVRIAELTAQRK"
     gene            10895..12031
                     /gene="potA"
                     /locus_tag="JN125_002657"
     CDS             10895..12031
                     /gene="potA"
                     /locus_tag="JN125_002657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter
                     ATP-binding protein PotA"
                     /protein_id="HAY8872395.1"
                     /translation="MGQSKKLNKQPSSLSPLVQLAGIRKCFDGKEVIPQLDLTINNGE
                     FLTLLGPSGCGKTTVLRLIAGLETVDSGRIMLDNEDITHVPAENRYVNTVFQSYALFP
                     HMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLETFAQRKPHQLSGGQQQRVAIAR
                     AVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRI
                     VVMREGRIEQDGTPREIYEEPKNLFVAGFIGEINMFNATVIERLDEQRVRANVEGREC
                     NIYVNFAVEPGQKLHVLLRPEDLRVEEINDDNHAEGLIGYVRERNYKGMTLESVVELE
                     NGKMVMVSEFFNEDDPDFDHSLDQKMAINWVESWEVVLADEEHK"
     gene            12015..12878
                     /gene="potB"
                     /locus_tag="JN125_002658"
     CDS             12015..12878
                     /gene="potB"
                     /locus_tag="JN125_002658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309597.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spermidine/putrescine ABC transporter permease
                     PotB"
                     /protein_id="HAY8872396.1"
                     /translation="MKNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFV
                     KMVLTLDNYTRLLDPLYFEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLL
                     FLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYI
                     LLPFMVMPLYSSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPA
                     MGLFYVSDLMGGAKNLLIGNVIKVQFLNIRDWPFGAATSITLTIVMGLMLLVYWRASR
                     LLNKKVSELDD"
     gene            complement(13110..>13176)
                     /locus_tag="JN125_002659"
     CDS             complement(13110..>13176)
                     /locus_tag="JN125_002659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001387760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HAY8872397.1"
                     /translation="LLNRVDTSTAPDIEWPTSPAE"
BASE COUNT         3216 a         3356 c         3317 g         3287 t
ORIGIN      
        1 atgtttacat aatagttgca ttataaaaat atgctcgata tgctattaat aatatccaca
       61 taaataaaac aacgggcgtg ttatacgccc gtttcaatat ttaactcatg gagagattac
      121 atgttttcga tgatcgcttc accaaactct gaacatttca gcagcttagc gccttccatc
      181 agacgttcaa agtcataagt tacggttttc gcgttgatag caccttccat acctttaaca
      241 attaaatcag ccgcttcagt ccaccccata tggcgcagca tcatctcagc ggagaggatg
      301 atagagcctg gatttacttt gtcctgaccg gcgtatttcg gcgcagtacc gtgggtggct
      361 tcaaacaggg cgcattcgtc accgatgttt gctccagggg cgataccgat accgccaacc
      421 tgcgctgcca gggcgtcaga aatgtagtca ccgttcaggt tcatacaggc gataacatca
      481 tattcagccg gacgcagcag gatctgttgc aggaatgcat cagcaatcac gtctttaatg
      541 acgatctctt tgccggtgtt cgggttttta actttcagcc acgggccgcc gtcgatcagt
      601 tcaccgccaa actcttcacg cgccagctgg tagccccagt ctttaaacgc gccttcggtg
      661 aacttcatga tgttgccttt gtgcaccaga gtcacagagt cacgatcgtt agcaattgcg
      721 tattcgatcg ctgcacgaac cagacgtttg gtgccttctt ccgaacacgg cttaataccg
      781 ataccacaat gttccgggaa gcgaattttc ttcaccccca tctcttcacg caggaattta
      841 atcactttct cggcgtcggc agagtctgct ttccattcga tacccgcata aatgtcttcc
      901 gagttttcac ggaagataac catatcggtc agttcagggt gtttaaccgg gcttggagtg
      961 ccctgatagt aacgtaccgg acgcaggcag atgtagagat ccagttcctg gcgcagggca
     1021 acgttcagag agcgaatacc gccaccaaca ggagtggtca gcggaccttt aatggcaacg
     1081 cgatattcac gaatcagatc aagggtttca gcaggcagcc agacatcctg accataaacc
     1141 tgtgtggatt tttcaccggt gtaaatttcc atccaggaga ttttacgctc gcctttatag
     1201 gctttctcga ctgcagcgtc gaccactttc agcatggctg gggttacatc tacaccgatt
     1261 ccatcacctt caatgtaagg gataatcgga ttttcaggaa cgttgagttt gccgttttgc
     1321 agggtgatct tcttgccttg tgccggaaca actactttac tttccattca cctctccttc
     1381 gagcgctact ggtttgctcg tctgccacca cgttgcatat gcgtttgcgt cctgcgatac
     1441 ggatgcttta gagcaatttt ttgttaatga tttgtaattg gcttgtcaat actaccctat
     1501 tgtttgccgt catgaaagat gcgcgttatt aggctataat gcggcaattc ataatctctg
     1561 aaaataccat gcaaaaaact tcttttagaa atcacctggt taagcgattc agctcgcaac
     1621 gttctaccag gcgtaaacct gaaaaccagc ccacgcgtgt gatcctgttc aataaaccct
     1681 acgatgttct tccgcagttc accgatgaag ccggacgcaa aacattaaaa gaattcatcc
     1741 cggttcaggg cgtttatgca gcaggtcgtc ttgaccgcga tagcgaaggg ttactggtgc
     1801 tgaccaataa cggcgcgttg caggcgcgtt taacccagcc gggcaaacgc accgggaaaa
     1861 tctattatgt gcaggtggaa ggtattccca cacaagacgc acttgaagcc ttgcgcaatg
     1921 gcgtaacctt aaatgatggc cctaccctgc ccgccggcgc ggagctggtt gacgaaccag
     1981 cgtggttatg gccgcggaat ccaccaattc gtgaacgcaa aagtattccc accagctggc
     2041 tgaagatcac cttatatgaa ggacgtaatc gccaggtgcg ccgcatgacc gcccatgttg
     2101 gtttccccac gctgcgactg attcgttatg cgatgggtga ttacactttg gataaccttg
     2161 ccaatggcga atggcgagaa gcaacagaat aaggatgcac aatgtttaaa ccgcacgtta
     2221 ccgttgcttg cgtagtgcac gcagagggta aatttttagt cgttgaagag acgattaatg
     2281 gtaaagcgtt atggaaccaa cctgccgggc atctggaagc cgatgaaacc ttagtggaag
     2341 ctgccgcccg tgagctatgg gaagaaaccg gcatcagcgc gcaaccgcaa cactttattc
     2401 gtatgcatca gtggattgcg ccagataaaa cgccgttttt gcgtttcctc tttgccattg
     2461 agcttgagca aatatgcccg acccagcctc atgacagcga tatcgactgc tgtcgttggg
     2521 tcagcgccga agaaatttta aaggcgtcaa atcttcgttc gccgctggtg gcggaaagta
     2581 tccgttgtta tcaaagcgag caacgctatc cgctggagat gattggcgat tttaactggc
     2641 cttttacaaa gggtgtcatc taaaaggctg cgtgatagaa tacgccgcct tgaagttcaa
     2701 tgtcgtgagt gatccaatgt ctgaaaccgc aaaaaaagta atcgtcggca tgtccggcgg
     2761 tgtcgattcc tccgtttctg cctggctgtt gcaacaacag ggatatcagg ttgaaggcct
     2821 gtttatgaag aactgggaag aagacgacgg tgaggaatat tgcacagcgg cagcggatct
     2881 ggctgatgcc caggctgtct gcgacaagct cggcattgaa ctgcacaccg ttaactttgc
     2941 tgccgagtac tggaacaacg tcttcgaact gttccttgcc gaatataaag ccggtcgcac
     3001 gccgaatccg gatattctgt gcaacaaaga gatcaaattt aaagctttcc tcgaatttgc
     3061 cgccgaagat ttaggtgccg attatatcgc taccggtcat tacgtacgtc gggccgatgt
     3121 cgatggcaag agccgcctgc tgcgtggtct ggacagcaat aaagaccaga gctacttcct
     3181 ttatacgctc agccatgagc agattgcgca aagcctgttc ccggtcggcg aactggaaaa
     3241 accgcaggtg cgtaagattg ctgaagatct tggtctggtc accgcgaaga aaaaagactc
     3301 taccggcatt tgcttcattg gcgaacgtaa attccgcgag ttcctgggcc gttatctccc
     3361 ggcgcaaccg ggcaaaatca ttaccgtcga tggcgatgaa attggtgagc accaggggct
     3421 gatgtatcac actctcggtc agcgtaaagg tctgggtatc ggtggcacca aagaaggcac
     3481 cgaagaaccg tggtatgtgg tggacaaaga cgtcgaaaac aacattctgg ttgttgcgca
     3541 gggccatgaa cacccgcggc tgatgtctgt cgggttgatt gcccagcagt tgcactgggt
     3601 cgatcgcgaa ccattcaccg gtactatgcg ttgcacggta aaaacccgct atcgccagac
     3661 cgatatccct tgcaccgtca aggcgctgga cgatgatcgc attgaagtga ttttcgatga
     3721 accggttgcc gccgtgacgc cgggccagtc tgccgtcttc tataacggtg aagtgtgcct
     3781 cggtggcggt attattgagc agcgtctgcc gctgccggtc tgattattat ctttacttaa
     3841 aacaaggaag cagtgaacgt ggcaaagaat tactatgaca tcaccctcgc cctggccggt
     3901 atttgtcagt cggcacgcct ggtgcaacaa ctcgctcacc aggggcattg tgatgccgat
     3961 gcgctacacg tctcactcaa cagtattatt gatatgaacc ccagctcgac gctggcggtt
     4021 tttggcggta gcgaagccaa cctgcgcgtc gggctggaaa ccctgctcgg cgtgctcaat
     4081 gccagcagtc gccagggctt aaacgccgaa ttaacccgct acacactcag cttgatggtg
     4141 cttgagcgca aactctcctc agcgaaaggc gcgctcgaca ctctgggcaa ccggatcaac
     4201 ggcctgcaac gccagctcga acacttcgat ttacagtccg aaacgctgat gagcgcgatg
     4261 gctgctatct atgttgatgt gatcagcccg cttggcccgc gcattcaggt caccggttcc
     4321 cctgctgtac tgcaaagccc acaagtgccg gcgaaagttc gcgcaaccct gctggcaggc
     4381 attcgcgccg ccgtgctctg gcaccaggtc ggcggcggac gtctgcaact gatgttttct
     4441 cgtaatcgcc tgaccactca ggcaaaacaa attcttgctc atttaacccc ggagttgtga
     4501 tctatggaat tatcctcact gaccgccgtt tcccctgtcg atggacgcta cggcgataaa
     4561 gtcagcgcgc tgcgcgggat tttcagcgaa tatggtttgc tgaaattccg tgtacaagtt
     4621 gaagtacgtt ggctgcaaaa actggccgcg cacgcagcga tcaaggaagt tcctgctttt
     4681 gctgccgacg caatcggtta ccttgatgca attgtcgcca atttcagcga agaagatgcc
     4741 gcacgcatca aaaccatcga gcgtaccact aaccacgacg ttaaagcggt tgagtatttc
     4801 ctgaaagaaa aagtggcgga gatcccggaa ctgcacgcgg tttctgaatt catccacttt
     4861 gcctgtactt cggaagatat caataacctc tcccacgcat taatgctgaa aaccgcgcgt
     4921 gatgaagtga tcctgccgta ctggcgtcaa ctgattgatg gcattaaaga tctcgccgtt
     4981 cagtaccgcg atatcccgct gctgtctcgt acccacggtc agccagccac gccgtcaacc
     5041 atcggtaaag agatggcaaa cgtcgcctac cgtatggagc gccagtaccg ccagcttaac
     5101 caggtggaga tcctcggcaa aatcaacggc gcggtcggta actataacgc ccacatcgcc
     5161 gcttacccgg aagttgactg gcatcagttc agcgaagagt tcgtcacctc gctgggtatt
     5221 cagtggaacc cgtacactac ccagattgaa ccgcacgact acattgccga actgtttgat
     5281 tgcgttgcgc gcttcaacac cattctgatc gactttgacc gtgacgtctg gggttatatc
     5341 gcccttaacc acttcaaaca gaaaaccatt gctggtgaga ttggttcttc caccatgccg
     5401 cataaagtta acccgatcga cttcgagaac tccgaaggga atctgggcct ttccaacgcg
     5461 gtattacagc atctggcaag caaactgccg gtttcccgct ggcagcgtga cctgaccgac
     5521 tccaccgtgc tgcgtaacct cggcgtgggt atcggttatg cgctgattgc gtatcaatcc
     5581 accctgaaag gcgtgagcaa actggaagtg aaccgtgacc atctgctgga tgagctggat
     5641 cacaactggg aagtgctggc ggagccaatc cagacagtta tgcgtcgcta tggcatcgaa
     5701 aaaccgtacg agaagctgaa agagctgact cgtggtaagc gcgttgacgc cgaaggcatg
     5761 aagcagttta tcgacggtct ggcgttgcca gaagaagaga aagcccgcct gaaagcgatg
     5821 acgccggcaa actacattgg tcgcgccatc accatggttg atgagctgaa ataaactcgt
     5881 atcagtgccg gatggcgatg ctgtccggcc tgcttattaa gattatccgc tttttatttt
     5941 ttcactttac ctcccctccc cgctggttta tttaatgttt acccccataa ccacataatc
     6001 gcgttacact attttaataa ttaagacagg gagaaataaa aatgcgcgta ctggttgttg
     6061 aagacaatgc gttgttacgt caccacctta aagttcagat tcaggatgct ggtcatcagg
     6121 tcgatgatgc agaagatgcc aaagaagccg attattatct caatgaacat ttaccggata
     6181 ttgcgattgt cgatctcgga ttgccagacg aggacggtct gtcactgatt cgccgctggc
     6241 gtagcaatga tgtttcactg ccgattctgg tattaaccgc ccgtgaaagc tggcaggaca
     6301 aagtcgaagt attaagtgct ggtgctgatg attacgtgac taaaccattt catattgaag
     6361 aggtgatggc gcgaatgcag gcattaatgc ggcgtaatag cggtctggct tcacaggtca
     6421 tttcgctacc accgtttcag gttgatctct ctcgccgtga attatctatt aatgacgaag
     6481 tgatcaaact gaccgcgttc gaatacacca ttatggaaac gttgatacgc aataatggca
     6541 aagtggtgag caaagattcg ttaatgctcc aactctatcc ggatgcggag ctgcgggaaa
     6601 gccataccat tgatgtactg atgggacgtc tgcgcaaaaa aattcaggca caatatccgc
     6661 aagaagtgat tactaccgtt cgcggccagg gctatttgtt cgaattgcgc tgatgaaaaa
     6721 attactgcgt ctttttttcc cgctctcgct gcgggtacgt tttctgttgg caacggctgc
     6781 ggtagtactg gtgctttcgc ttgcctacgg aatggtcgcg ctgatcggtt atagcgtcag
     6841 tttcgataaa actacgtttc ggctgttacg tggcgagagc aatctgttct atacccttgc
     6901 gaagtgggaa aacaataagt tgcatgtcga gttacccgaa aatatcgaca agcaaagccc
     6961 caccatgacg ctaatttatg atgagaacgg gcagctttta tgggcgcaac gtgacgtgcc
     7021 ctggctgatg aagatgatcc agcctgactg gctgaaatcg aatggttttc atgaaattga
     7081 agcggatgtt aacgatacca gcctcttgct gagtggagat cattcgatac agcaacagtt
     7141 gcaggaagtg cgggaagatg atgacgacgc ggagatgacc cactcggtgg cagtaaacgt
     7201 ctacccggca acatcgcgga tgccaaaatt aaccattgtg gtggtggata ccattccggt
     7261 ggagctaaaa agttcctata tggtctggag ctggtttatc tatgtgctct cagccaatct
     7321 gctgttagtg atcccgctgc tgtgggtcgc cgcctggtgg agtttacgcc ccatcgaagc
     7381 cctggcaaaa gaagtccgcg aactggaaga acataaccgc gaattgctca atccagccac
     7441 aacgcgagaa ctgaccagtc tggtacgaaa cctgaaccga ttgttaaaaa gtgaacgcga
     7501 acgttacgac aaataccgta cgacgctcac cgacctgacc catagtctga aaacgccact
     7561 ggcggtgctg caaagtacgc tgcgttctct gcgtagtgaa aagatgagcg tcagtgatgc
     7621 tgagccggta atgctggagc aaatcagccg catttcacag caaattggct actacctgca
     7681 tcgtgccagt atgcgcggcg ggacattgct cagccgcgag ctgcatccgg tcgccccact
     7741 gctggacaat ctcacctcag cgctgaacaa agtgtatcaa cgcaaagggg tcaatatctc
     7801 tctcgatatt tcgccagaga tcagctttgt cggtgagcag aacgattttg tcgaggtgat
     7861 gggcaacgtg ctggataatg cctgtaaata ttgcctcgag tttgtcgaaa tttctgcaag
     7921 gcaaaccgac gagcatctct atattgtggt cgaggatgat ggccccggta ttccattaag
     7981 caagcgagag gtcattttcg accgtggtca acgggttgat actttacgcc ctgggcaagg
     8041 tgtagggctg gcggtagccc gcgaaatcac cgagcaatat gagggtaaaa tcgtcgccgg
     8101 agagagcatg ctgggcggtg cgcggatgga ggtgattttt ggtcgccagc attctgcgcc
     8161 gaaagatgaa taaatatgtc catacttcac gcattacgtt aagcatccgt tataatcggt
     8221 tgcagatacc agcctgtgga tgcttaacat ggaataccaa ctcactctta actggcccga
     8281 ttttcttgaa cgtcactggc agaaacgccc ggtggtgtta aaacgcggct ttaataattt
     8341 tattgacccg atctctccag acgagttggc gggtctggcg atggaaagcg aagttgacag
     8401 tcgactggtc agtcaccagg atggcaaatg gcaggtcagc cacggcccgt tcgaaagcta
     8461 cgatcatctc ggtgaaacca actggtcatt actggtacag gcagtgaacc actggcatga
     8521 gccgaccgcc gcgctgatgc gaccgttccg tgaactaccg gactggcgta ttgatgatct
     8581 gatgatttct ttttctgtac ctggcggcgg cgtcggcccg catctcgatc agtacgacgt
     8641 gtttatcatt cagggtaccg gacgtcgtcg ctggcgagtg ggcgaaaagc tgcaaatgaa
     8701 acagcactgc ccacatccgg atctgttaca ggtcgatccg ttcgaagcca tcatcgatga
     8761 agagctggag cctggtgata ttctttatat tccgccagga ttcccgcatg aaggctacgc
     8821 gctggaaaat gcgatgaact attccgtggg ctttcgcgcg ccaaatacgc gggaactgat
     8881 tagtggattt gccgattatg tgctgcaacg tgaactgggc ggcaactact acagcgatcc
     8941 tgatgttcca cctcgcgctc atcctgcgga tgttctgcct caagagatgg ataaactgcg
     9001 tgagatgatg ctcgaattga tcaaccagcc ggaacacttt aagcaatggt ttggcgagtt
     9061 tatatcccag tcacgtcatg aactggatat cgcgccgccg gaaccgcctt atcagccaga
     9121 tgaaatctac gatgcgctga aacaaggtga tgtgctggtg cgcctgggtg gtctgcgcgt
     9181 attgcgcatt ggcgacgacg tgtatgccaa tggtgagaag atcgattccc cgcaccgtcc
     9241 ggcactggat gcactcgcca gcaacattgc gctgactgcg gagaattttg gcgatgcgct
     9301 ggaagatccg tcattcctcg cgatgctcgc ggcgctggtc aatagcgggt attggttctt
     9361 cgaagggtaa gtttggattt aagccggatg cagcatcaca tgccgcatcc cttttcgctt
     9421 acttccgttg cgccgttaac tcggcaatac ggacgatcac ctgcaccgct ttttccatac
     9481 cttccagagt cacaaactca tgcttaccat gatagttgta accgccagtg aacaagttcg
     9541 ggcacggtaa tcccataaac gacaactgcg cgccgtcggt accgccgcgg atcggtttca
     9601 gttccggttc aatatcgcag tcacgcatcg cctgctgggc gatatcgaga atatgcggat
     9661 gctcaaccac tttctcgcgc atattgtagt aactgtcttc aatcaccagt tcaatgtagc
     9721 aatcaggatg taaccctttg cccacttttt tggcgatctc catcatttta catttacgcg
     9781 cttcaaactg tttacggtcg aaatcacgga tgatgtagtg catatcggcc cgttcaacgg
     9841 tgcctttcat gcccgccagg tgatagaaac cttcatagcc ttctgtcatt tccgggcttt
     9901 catccgccgg aacttccgca tgaatacgtg ccgccagcga cagcgcattt accatcactc
     9961 ctttcgccgt gcccggatga acattgttac cgacaatttt gatattgacc gatgcggcgt
    10021 tgaagttttc aaactccagt tcgcctacgc caccaccgtc aacagtgtaa gcccagcggg
    10081 catcgaaggc atcaacatca aaatgtttcg cccctttgcc cacttcttca tccggggtaa
    10141 aggcgacgcg aatatcacca tgcggaatgt ttttctgttg caataccgcc agcgcggtca
    10201 tgatttctgc aatacctgct ttgtcatcgg cacctaacaa ggttttacca tcggtggtaa
    10261 tcaacgtctg acccagtagc tgatgcagca ccgggaacat aaccggtgat aaaacttcat
    10321 cgccgatacc cagcgcaata tcgccaccgc gatagttttc aacaatttgc ggattaacat
    10381 ttttgccgct gcaatccggt gaggtatcca catgagaaat aaagccaatc gccgggatat
    10441 cgccagggac gttagccggt aacgtcgcca tcaaagtgcc cttctcactt aaggtcacat
    10501 tgataagccc catttcttcg agctgctctt tcagcagatg caataacttc cattggcctt
    10561 ccgtgctggg aacctgtctc acccctgctt ttgattgggt atccagagac acgtagttca
    10621 aaaatcgctc aagtagttta tccatgtagt caccctcact ttttgtgaca acattattaa
    10681 gaagcaagaa aagacaaata ttgcgtcagg tcacttttac ccctgcaagc gggaatattt
    10741 atcagcatta ccttaatgaa tataaagcta agccagtaat tcacaacaaa gattggcgat
    10801 tcaagcggtt tgccgtagaa ttaccgccct cattaagagt caccaaggtg gttaaccaca
    10861 aaccccgcat cggtaagcca tccgttgcgt ttacatggga cagagtaaaa aattgaataa
    10921 acaaccgagt tcgctttcac cgctggtgca attggcggga attcgcaaat gctttgatgg
    10981 taaagaggtc attccccagc tggatctgac tatcaacaat ggcgagttcc tcacgctgct
    11041 tggcccttct ggctgcggta aaacaaccgt tcttcgcctg attgcaggtc tggaaactgt
    11101 tgattccgga cgcatcatgc tggataacga ggacatcacc cacgttccgg cggaaaaccg
    11161 ctatgtgaac actgttttcc aaagctacgc acttttcccc cacatgaccg tgttcgaaaa
    11221 tgtggccttt gggttgcgca tgcaaaaaac ccccgctgct gaaattacgc cccgcgtgat
    11281 ggaagccctg cggatggtgc aactggaaac cttcgctcaa cgtaaaccgc atcagctctc
    11341 tggtggtcaa cagcaacgcg tcgccattgc tcgcgcggtg gttaacaagc ctcgtctgtt
    11401 gttgctggat gagtcgctct cagcgctgga ttacaaactg cgtaagcaaa tgcagaacga
    11461 gctgaaagcg ttacagcgta agcttggcat tacattcgtc ttcgtgactc acgaccagga
    11521 agaagcactc accatgtcag acaggattgt ggtgatgcgc gagggtcgca ttgagcaaga
    11581 cggcacgccg cgtgaaatct acgaagagcc gaaaaacctg tttgttgccg gcttcattgg
    11641 cgaaattaat atgtttaacg ccacggtgat cgagcgactc gacgagcagc gcgtacgcgc
    11701 caacgttgaa ggccgcgaat gtaatatcta cgttaacttc gccgttgaac cggggcaaaa
    11761 actgcatgtt ctgctgcgcc cggaagactt acgtgttgaa gagattaacg acgacaacca
    11821 cgctgaaggg ctgattggtt acgttcgtga gcgtaactac aaaggcatga cgctggagtc
    11881 ggttgttgaa ctggaaaatg gcaagatggt gatggtcagc gaattcttca atgaagacga
    11941 tcctgacttt gaccactctc tcgaccaaaa aatggccatt aattgggtag aaagctggga
    12001 ggtcgtactg gctgatgaag aacacaagta agttccagaa tgtagtgatt gtcactattg
    12061 tcggttggct tgtgttgttt gtctttctgc ccaacctgat gatcattggc accagctttt
    12121 tgacccgcga cgacgccagt ttcgtcaaaa tggtcttgac gctggataac tacacgcgtc
    12181 tgctcgatcc gctctatttt gaagtgctat tgcactcgct gaatatggcg ctgatcgcca
    12241 ccctcgcctg cctggtgctg ggctatccat ttgcctggtt tctggcgaag ctgccacaca
    12301 aggtgcgtcc gctgctgctg tttctgctga ttgttccgtt ctggaccaac tcattgattc
    12361 gtatctacgg gctgaaaatt ttcctcagca ccaaaggcta tctcaacgag tttttgctct
    12421 ggctgggcgt tatcgacaca ccaatccgta tcatgttcac gcccagtgcg gtgattatcg
    12481 gtctggttta cattctgctg ccgtttatgg tgatgccgct gtactccagt atcgaaaaac
    12541 tggataagcc gttgcttgag gcggcgcgcg atctcggtgc cagcaagtta cagactttta
    12601 tccgcatcat tattccactg acgatgccgg ggattattgc cggatgtctg ctggtgatgc
    12661 tgccagcgat gggcctgttc tatgtgtccg acctgatggg cggtgcgaaa aacctgctga
    12721 tcggtaacgt catcaaggta cagttcctca atattcgtga ctggccgttt ggtgcagcca
    12781 ccagcattac gctgactatc gtaatgggcc tgatgttgct ggtttactgg cgcgcttctc
    12841 gtttgctgaa taagaaggtg agcgaattag atgattaatc atttatattc aatgcattaa
    12901 gtttgttttt gagtggtttt gccgtttaag gtaacggcgt tatagatcct atcaaaatca
    12961 atcaattcca ttctggtttt ggagaaagat ttttcgagag cttcggtctt taactaaaac
    13021 tgattgcgta taaccccaat acccctcccc gactatctga atggtcgggg aggcacttca
    13081 cgcacaaaat atcatccctg cgccgttgat tactctgcag gtgaagtcgg ccactcaata
    13141 tcaggtgcag ttgatgtatc aacacggttc agcaac
//
LOCUS       DADMHM010000110        13173 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.111, whole genome shotgun sequence.
ACCESSION   DADMHM010000110 DADMHM010000000
VERSION     DADMHM010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13173)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13173)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13173
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.111"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            479..1303
                     /gene="gadX"
                     /locus_tag="JN125_002660"
     CDS             479..1303
                     /gene="gadX"
                     /locus_tag="JN125_002660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance transcriptional activator GadX"
                     /protein_id="HAY8872398.1"
                     /translation="MQSLHGNCLIAYARHKYILTMVNGEYRYFNGGDLVFADASQIRV
                     DKCVENFVLVSRDTLSLFLPMLKEEALNLHAHKKISSLLVHHCSRDIPVFQEVAQLSQ
                     NKNLRYAEMLRKRALIFALLSVFLEDEHFIPLLLNVLQPNMRTRVCTVINNNIAHEWT
                     LARIASELLMSPSLLKKKLREEETSYSQLLTECRMQRALQLIVIHGFSIKRVAVSCGY
                     HSVSYFIYVFRNYYGMTPTEYQERSAQGLPNRDSAASIVAQGNFYGTDRSAEGIRL"
     gene            1671..2399
                     /gene="gadW"
                     /locus_tag="JN125_002661"
     CDS             1671..2399
                     /gene="gadW"
                     /locus_tag="JN125_002661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance transcriptional activator GadW"
                     /protein_id="HAY8872399.1"
                     /translation="MTHVCSVILIRRSFDIYHEQHKISLHNESIVLLEKNLADDFAFC
                     SPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESG
                     VNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAE
                     RMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYF
                     INTFRQYYGVTPHQFAQHSPGTFS"
     gene            complement(2762..5875)
                     /locus_tag="JN125_002662"
     CDS             complement(2762..5875)
                     /locus_tag="JN125_002662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit"
                     /protein_id="HAY8872400.1"
                     /translation="MANYFIDRPVFAWVLAIIMMLAGGLAIMNLPVAQYPQIAPPTIT
                     VSATYPGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDI
                     AQVQVQNKLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVAS
                     NIKDPLSRTAGVGSVQLFGSEYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQ
                     LGGMPQAADQQLNASIIVQTRLQTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDYS
                     TVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIE
                     ISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINT
                     LTMFGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLS
                     AVFMPMAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATILKAAPEGGHKPN
                     ALFARFNTLFEKSTQHYTDSTRSLLRCTGRYMVVYLLICAGMAVLFLRTPTSFLPEED
                     QGVFMTTAQLPSGATMVNTTKVLQQVTDYYLTKEKDNVQSVFTVGGFGFSGQGQNNGL
                     AFISLKPWSERVGEENSVTAIIQRAMIALSSINKAVVFPFNLPAVAELGTASGFDMEL
                     LDNGNLGHEKLTQARNELLSLAAQSPDQVTGVRPNGLEDTPMFKVNVNAAKAEAMGVA
                     LSDINQTISTAFGSSYVNDFLNQGRVKKVYVQAGTPFRMLPDNINQWYVRNASGTMAP
                     LSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLPAGVGYS
                     WTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGALLAT
                     DLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKEGKTPIGAIIEAARMRLRP
                     ILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIYFVPVFFVVVEHL
                     FARFKKA"
     gene            complement(5900..7057)
                     /gene="mdtE"
                     /locus_tag="JN125_002663"
     CDS             complement(5900..7057)
                     /gene="mdtE"
                     /locus_tag="JN125_002663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug transporter subunit MdtE"
                     /protein_id="HAY8872401.1"
                     /translation="MNRRRKLLIPLLFCGAMLTACDDKSAENAAAMTSEVGVVTLSPG
                     SVNVLSELPGRTVPYEVAEIRPQVGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELN
                     SAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAV
                     EQATINLQYANVTSPITGVSGKSSVTVGALVTANQADSLVTVQRLDPIYVDLTQSVQD
                     FLRMKEEVASGQIKQVQGSTPVQLNLENGKRYSQTGTLKFSDPTVDETTGSVTLRAIF
                     PNPNGDLLPGMYVTALVDEGSRQNVLLVPQEGVTHNAQGKATALILDKDDVVQLREIE
                     ASKAIGDEWVVTSGLQAGDRVIVSGLQRIRPGIKARAISSSQENASTESKQ"
     gene            7117..7395
                     /locus_tag="JN125_002664"
     CDS             7117..7395
                     /locus_tag="JN125_002664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872402.1"
                     /translation="MRDLQTSGIVGLSASKVGYRHSDRHGEVNDKKNVAVLPTVPASI
                     RATKGSTGGYTYQGNKVVLASPLVITGGNEISICIPRHASHQFQLLMS"
     gene            complement(7396..7923)
                     /gene="gadE"
                     /locus_tag="JN125_002665"
     CDS             complement(7396..7923)
                     /gene="gadE"
                     /locus_tag="JN125_002665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance transcriptional activator GadE"
                     /protein_id="HAY8872403.1"
                     /translation="MIFLMTKDSFLLQGFWQLKDNHEMIKINSLSEIKKVGNKPFKVI
                     IDTYHNHILDEEAIKFLEKLDAERIIVLAPYHISKLKAKAPIYFVSRKESIKNLLEIT
                     YGKHLPHKNSQLCFSHNQFKIMQLILKNKNESNITLTLNISQQTLKIQKFNIMYKLKL
                     RRMSDIVTLGITSYF"
     gene            complement(8722..9294)
                     /gene="hdeD"
                     /locus_tag="JN125_002666"
     CDS             complement(8722..9294)
                     /gene="hdeD"
                     /locus_tag="JN125_002666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-resistance protein HdeD"
                     /protein_id="HAY8872404.1"
                     /translation="MLYIDKATILKFDLEMLKKHRRAIQFIAVLLFIVGLLCISFPFV
                     SGDILSTVVGALLICSGIALIVGLFSNRSHNFWPVLSGFLVAVAYLLIGYFFIRAPEL
                     GIFAIAAFIAGLFCVAGVIRLMSWYRQRSMKGSWLQLVIGVLDIVIAWIFLGATPMVS
                     VTLVSTLVGIELIFSAASLFSFASLFVKQQ"
     gene            9549..9881
                     /gene="hdeA"
                     /locus_tag="JN125_002667"
     CDS             9549..9881
                     /gene="hdeA"
                     /locus_tag="JN125_002667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-activated periplasmic chaperone HdeA"
                     /protein_id="HAY8872405.1"
                     /translation="MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLA
                     VDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQNKQANFKDKVKGE
                     WDKIKKDM"
     gene            9997..10323
                     /gene="hdeB"
                     /locus_tag="JN125_002668"
     CDS             9997..10323
                     /gene="hdeB"
                     /locus_tag="JN125_002668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417966.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid-activated periplasmic chaperone HdeB"
                     /protein_id="HAY8872406.1"
                     /translation="MNISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQEFID
                     LNPKAMTPVAWWMLHEETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTFKNQA
                     SNDLPN"
     gene            10387..11034
                     /locus_tag="JN125_002669"
     CDS             10387..11034
                     /locus_tag="JN125_002669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MgtC/SapB family protein"
                     /protein_id="HAY8872407.1"
                     /translation="MTAEFIIRLILAAIACGAIGMERQMRGKGAGLRTHVLIGMGSAL
                     FMIVSKYGFADVLSLDHVGLDPSRIAAQVVTGVGFIGAGNILVRNQNIVGLTTAADIW
                     MTAAIGMVIGSGMYELGMYGSVMTLLVLEVFHQLTFRLMNKNYHLQLTLVNGNTVSML
                     DWFKQQKIKTDLVSLQENEDHEVVAIDIQLHATTSIEDLLRLLKGMAGVKGVSIS"
     gene            complement(11076..11606)
                     /locus_tag="JN125_002670"
     CDS             complement(11076..11606)
                     /locus_tag="JN125_002670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAY8872408.1"
                     /translation="MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDGMLHQNAFVI
                     IDTLMNNVFHSNFLTQIERLKPVHVIIFSPFNIKRCLGKVPVTFVPRTITIIDFVALI
                     NGSYCSVPEAAVSLSRKQHQVLSCIANQMTTEDILEKLKITLKTFYCHKHNIMMILNL
                     KRINELVRHQHIDYLV"
     gene            complement(11762..12328)
                     /gene="slp"
                     /locus_tag="JN125_002671"
     CDS             complement(11762..12328)
                     /gene="slp"
                     /locus_tag="JN125_002671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312404.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein Slp"
                     /protein_id="HAY8872409.1"
                     /translation="MNMTKGALILSLSFLLAACSSIPQNIKGNNQPDIQKSFVAVHNQ
                     PGLYVGQQARFGGKVINVINGKTDTLLEIAVLPLDSYAKPDIEANYQGRLLARQSGFL
                     DPVNYRNHFVTILGTIQGEQPGFINKVPYNFLEVNMQGIQVWHLREVVNTTYNLWDYG
                     YGAFWPEPGWGAPYYTNAVSQVTPELVK"
     gene            complement(12684..13173)
                     /locus_tag="JN125_002672"
                     /pseudo
     CDS             complement(12684..13173)
                     /locus_tag="JN125_002672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312403.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         3657 a         2872 c         2947 g         3697 t
ORIGIN      
        1 ggactttgct gaactgttgc tggaagacta caaagcctcc ctgaaatatc tcagcgatca
       61 cccgaaactg cagggtattg cccagcagaa cagctttaaa cacacctgat aacataacgt
      121 tgtaaaaacc gaatgcccag cctttaaaaa aacagctggg cattcggttg cttattaatc
      181 gcaataatat attggctgtc tattcatcgt gttgataaga tatatgttat atgaatgttt
      241 attaaatgta gcgattgcct ttaatgtcac gaaaagggat tatttgcttg ctattaattt
      301 cactgcgttc ttaaacacgt ttttgtatta taaatccagt catcctgccc gtagaacatc
      361 acacattatc atcctgttct cccgcttcgt ttaaatttat ttatcaatca atttgactta
      421 agagggcggc gtgctacatt aattaacagt aatatgttta tgtaatatta agtcaactat
      481 gcaatcatta catgggaatt gtctaattgc gtacgcaaga cataaatata ttctcaccat
      541 ggttaatggt gaatatcgct attttaatgg tggtgacctg gtttttgcgg atgcaagcca
      601 aattcgagta gataagtgtg ttgaaaattt tgtattagta tcaagggata cgctttcatt
      661 atttctgccg atgctcaagg aggaggcatt aaatcttcat gcacataaaa aaatttcttc
      721 attactcgtt catcactgta gcagagatat tcctgttttt caggaagttg cgcaactatc
      781 gcagaataag aatcttcgct atgcagaaat gctacgtaaa agagcattaa tctttgcgtt
      841 gttatctgtt tttcttgagg atgagcactt tataccgctg cttttgaacg ttttgcaacc
      901 gaacatgcga acaagagttt gtacggttat caataataat atcgcccatg agtggacact
      961 agcccgaatc gccagcgagc tgttgatgag tccaagcctg ttaaagaaaa aattgcgcga
     1021 agaagagaca tcatattcac agttgcttac tgagtgtaga atgcaacgtg ctttgcaact
     1081 tattgttata catggctttt caattaagcg agtcgcagtg tcctgtggat atcacagcgt
     1141 gtcgtacttc atttacgtct ttcgaaatta ttatgggatg acgcccacag agtatcagga
     1201 gcgatcggcg cagggattgc cgaaccgtga ctcggcggca agtattgttg cgcaaggaaa
     1261 tttttacggc actgaccgtt ctgcggaagg aataagatta tagaatttta ctcagacata
     1321 aaaaaaaccc ggcatagggg accgggaaga ggatagtctg ccgtctccag actaataaac
     1381 cgttataaca ctccctgttg gcacgggaaa ctttgtgctc tcagtaagtt aaatataact
     1441 tttactggaa ataagatcag ccattttttt ataaacataa gctatacgct gtgcgaaaat
     1501 atattcgtgc tgcatttact tattatcaat taactgttat gcaaaactac tttgtggata
     1561 aattttggtc ctaccaaatc tggcagtttt tgcgctaaga aacagtctgg caacatttca
     1621 ttagtatact gaaattgaaa taatcgcagt atgaaatata agggataatc atgactcatg
     1681 tctgctcggt gatcctcatt cgtcgttcat tcgatattta tcatgaacag cataaaatat
     1741 cgctgcataa cgagagtatc gtgctgctgg agaaaaattt ggcagacgat tttgcgtttt
     1801 gttcaccgga tacgcgacga ctggatatcg atgagctgac agtttgccat tacttacaaa
     1861 atattcgtca gctaccacgc aatttagggt tacatagcaa agaccgtcta ttaattaacc
     1921 agtcaccccc catgccgctg gtgacggcga tttttgatag cttcaatgaa tccggggtaa
     1981 attcaccgat actgagcaat atgctctacc tttcctgttt atcgatgttt tctcataaga
     2041 aagaactgat ccccttactt ttcaatagca tcagcactgt ttcaggaaaa gttgaacgcc
     2101 ttattagctt tgatatcgcc aaacgttggt atctgcgcga tatcgcggaa agaatgtata
     2161 ccagcgagag tctcatcaaa aaaaagttgc aggatgaaaa tacctgtttc agtaaaatat
     2221 tactcgcttc caggatgtcg atggccagac gattactcga gttacgtcaa attcctctgc
     2281 atactattgc agaaaaatgt ggctatagca gtacgtcgta ctttataaac acatttcgac
     2341 aatattatgg tgtaacgcca catcagtttg cgcaacattc gccaggtacc ttttcctgac
     2401 atattttgca tttgaatatt ggtcaggatc tcacacctgc ttcatgtgaa actcttccct
     2461 gatgatttct gccgggctac cggctagttc tctttcgcag tttgccaggc ggtataggta
     2521 ttttcaggag gaaaagactc ggcatgtttg ggattattaa gctgacaatt catacgatta
     2581 cgggaatgtg ggtcagtatt gtgctgttca aattgatgac gaatggctgg agtggtttct
     2641 actttcagtg ctgtgtacta agcctggtat tcctgacggt tagctggttg ttgagtggtg
     2701 aatggttagc aggaaagagt aaggctgaac cttcacgttc aaccttactc tcatttacac
     2761 gttacgcttt tttaaagcgg gcaaagagat gttccactac aacgaaaaag accggaacga
     2821 agtaaattgc cagcactgtt gcggcaaaca tcccgcccat cacgccggta cctaccgcgt
     2881 tttgcgcgcc agaaccggca ccatgactga taaccagcgg cagcacgccg agaataaagg
     2941 ccagagaggt catcaggatt gggcgtaaac gcatccgcgc cgcttcgatg attgccccta
     3001 tcggcgtttt cccttctttc tgcatcatct caacggcaaa ttcgacaatc aggatggcgt
     3061 tcttggcgga aagcccgatg gtggtcagca aaccaacctg gaagtagacg tcattactta
     3121 agccgcgcag atcggtggcc agtaatgcgc caacgacgcc taacggaaca accaacatca
     3181 ccgagaacgg aattgaccag ctctcataga gtgcggcgag ggcgaggaac accacgacca
     3241 gtgaaatggc atacagtgca ggagcctggt ttgaggataa cgcttcctga tacgacagtc
     3301 cggtccatga gtagccgacg cctgccggaa gtttagcgac caggtctgcc ataaatttca
     3361 tagcgtcacc ggtacttttc ccggccgccg cttcacctaa aatctccatt gacgggatgc
     3421 cgttgtagcg ttccaatcgc ggtgaaccat aggtccattc ggtagacgag taggcagaaa
     3481 gcggtgccat cgtgccagag gcgttgcgta cataccattg gttgatgtta tccggcaaca
     3541 tacggaacgg cgtgcctgcc tggacataca cttttttcac ccgcccctgg ttgaggaagt
     3601 cgttcacgta gctgctgccg aaggcggtgg aaattgtctg gttgatatca gacagcgcca
     3661 cacccattgc ctcagctttc gcggcgttga cgttcacttt gaacatcggc gtatcttcca
     3721 ggccgttcgg gcgtaccccg gtgacctggt caggcgattg cgctgccagt gataacagct
     3781 cgtttcgtgc ctgggttagt ttttcgtgcc ccaggttacc gttgtccagc agttccatat
     3841 caaaacctga cgcggtaccc agttcagcca ccgcgggtaa gttgaacggg aagacgacgg
     3901 ctttattgat actgcttaac gcaatcattg cccgctgaat gatcgcggta accgagtttt
     3961 cctcaccgac acgttcagac cacggcttga gactgataaa cgccaggccg ttgttttgcc
     4021 cctggccgct gaagccaaag ccgccaacgg taaacaccga ctgaacatta tctttctctt
     4081 ttgtaagata ataatccgtc acctgttgca gcactttcgt ggtgttaacc atggtggcac
     4141 cggaaggtaa ctgcgcggtg gtcataaata ccccctgatc ctcttctggt aagaaagagg
     4201 tcggtgtacg caggaacagc accgccatcc cggcgcaaat cagcaggtag accaccatgt
     4261 agcgaccggt acaacgcaac agcgagcggg tgctatcggt atagtgctga gttgattttt
     4321 caaacagcgt gttgaagcgt gcgaacaggg cgttaggttt gtgaccgcct tccggcgcgg
     4381 ctttcagaat ggtggcgcac agggcagggg tcaggctcat tgccacaaat actgaaagca
     4441 gcatggagga gatcagcgtg atggagaact ggcggtagat ctccccggtt gcgccgctca
     4501 taaaggccat cggcataaac actgcggaaa gaacaacagc aataccgacc agcgcacgtt
     4561 ggatctgccc catcgattta tgcgtcgctt ccttcggtgg tagcttatct tccgcaatga
     4621 cacgctcgac gttctccacc accacgatgg cgtcatccac cagtaaccct atcgccagca
     4681 ccatcccgaa catagttaac gtgttgatgg tgaaaccgac cgccgacaag atcgcaaacg
     4741 tcccgagaat aaccaccggt acggcaatcg tcgggatgat tgtggcacgg aaattctgca
     4801 aaaacagata catgaccagg aagacgagga tgatagcctc aaccagtgtt ttaaaaactt
     4861 cctgaataga aatttcgata aacggcgtgg tgtcgtaagg ataaaccgtc ttcagacttg
     4921 cggggaaata ggctgataag cggttcagct cctctttgac tgcccgcgag gtatccaggg
     4981 cgtttgctcc ggtagccagt ttgatggcga tcccggcagc aggtttgccg ttatagcgcg
     5041 ccacggtgga ataatcttcc gctccaagtt cgacgcgggc gacatcacgc agcagcactt
     5101 gcgaaccatc ttgctgaact ttcaacagga ttttgccaaa ttcttccggc gtttgcagac
     5161 gcgtctgcac aatgatcgag gcgtttagtt gctggtctgc cgcctgtggc atgccaccca
     5221 gttgaccacc ggaaatctgg ttgttttgca ccttaatctg ggaaataaca tcggaaggta
     5281 ccagattgta tttattgagt ttttgcgggt ccagccagat acgcatggcg tactcggaac
     5341 caaagagctg tacgctacca acgcccgcgg tacggcttag cgggtctttg atattagacg
     5401 ctacatagtc cgcgatatcg tactggttga ggctgccgtt atcagaaata aacgccgcta
     5461 ccatcagaat attactgctc gacttatcaa cgctaatccc ctgctgctgc accgcttcag
     5521 gtaatgaagg catagcgagt tgcagtttat tttgcacctg aacctgtgcg atatcaggag
     5581 atgtcccagt ctcgaaggtc agagtgatag aggcattacc cgccgcatca ctggttgaag
     5641 acatgtacat caggccatca agcccattca tattttgctc aatcacctga gtgaccgagt
     5701 cttctaccgt ttgcgcatcg gcacctggat aggtagcgct gacggtaatg gtcggtggcg
     5761 caatctgcgg atactgcgca accggtaagt tcatgatcgc cagaccacct gcaagcatca
     5821 taataatggc aagtacccag gcaaaaaccg ggcgatcaat aaaatagtta gccatgaaag
     5881 tccccttaag cctgcaacgt tattgtttcg attcggtgct ggcgttttcc tggctggagg
     5941 aaattgctcg tgctttgata cccggacgaa tgcgttgcaa accggaaacg atcacccgat
     6001 cgccagcctg caagccagag gtgacaaccc actcgtcgcc gatggctttg ctggcttcaa
     6061 tttcgcgtag ctgcacaaca tcgtctttat ccagaatgag cgccgttgct ttaccctggg
     6121 cgttgtgggt gacgccttcc tgcggcacca gtaatacatt ctggcggcta ccttcatcca
     6181 ctaatgccgt gacgtacatg ccaggcagca agtcaccatt tgggttgggg aaaatcgccc
     6241 gtaacgtcac ggagcccgtg gtttcatcca ccgtcgggtc ggagaatttc agtgtgccgg
     6301 tctggctgta gcgtttacca ttttccagat tgagctgtac tggcgtactg ccctgaacct
     6361 gtttgatttg cccactggcg acctcttctt tcatgcgcaa gaaatcctgc accgactgcg
     6421 tgagatcgac ataaatcggg tccagacgtt gtacggtaac cagcgaatct gcctgattag
     6481 cggtaacgag tgcgccgacg gtcaccgacg atttcccgct gacgcccgta atcggcgagg
     6541 tgacattcgc gtattgcaga ttgatcgtcg cctgttcaac agccgctttg gcgacggtga
     6601 cattggcttc tgcttcattc agctgggtgc gcgcggtgtc gtaatcctga cggctaacgt
     6661 agttggtctt cagcaacgat gcctggcggt taaaggtgat gcgggcattg ctggcggtag
     6721 agagcgcttt cgccagcgag cctttggcgg agtttagctc ggcctgtaaa ggtgcaggat
     6781 caatctgata cagcgaatcg ccctggttca ctttatcgcc ttcgataaag ttgcgtttaa
     6841 tgataatacc gcccacctgg ggacgtatct cggcaacttc ataaggaacg gttctaccgg
     6901 gcaattcgct caacacattg accgaaccgg gggagagtgt gacgacaccg acctcagacg
     6961 tcatggcggc ggcgttttcc gccgatttgt catcgcaggc ggtgagcatc gcgccgcaga
     7021 ataacaacgg tattaacagc tttcttcttc tgttcatttt agtccctgaa aattcttgag
     7081 aaataacggt tctttaaatt gcgcgcgagg agagatatga gggatttaca gaccagcggc
     7141 atagtggggt tgtcagccag taaggtggga tacaggcaca gtgatcgaca tggtgaggtc
     7201 aacgacaaaa aaaatgttgc cgttctgcca acagttcctg ccagcattcg ggcaacgaag
     7261 ggttctactg gtggatacac ataccagggg aataaagtcg ttttagcctc tcctttagta
     7321 atcaccgggg gtaatgaaat cagcatctgc atccctcgtc atgccagcca tcaatttcag
     7381 ttgcttatgt cctgactaaa aataagatgt gatacccagg gtgacgatgt cgctcatacg
     7441 tcttagtttc aacttgtaca taatgttgaa tttctgaatc tttaatgttt gttgcgaaat
     7501 attgagcgtc aacgtgatat tgctttcatt tttatttttc agaatcagtt gcataatttt
     7561 gaactgatta tgtgaaaaac ataattgtga attcttatgg ggcaagtgtt taccataagt
     7621 aatctcaaga agatttttga tactttcttt gcggctaaca aaataaatag gcgctttagc
     7681 ttttagttta ctgatgtgat aaggtgccaa aacaataatt ctctcggcat ctaatttctc
     7741 cagaaattta atcgcttctt catcaaggat atgattgtga taggtatcaa tgataacctt
     7801 gaagggttta ttgcctactt ttttgatctc tgacagggaa ttgattttta tcatttcgtg
     7861 attatctttc aactgccaaa agccctgtaa aagaaaagaa tctttcgtca tgagaaaaat
     7921 cataacttgc tccttagccg ttatcgtttc gaacatgtca tccttttcat tatttacatc
     7981 cttgtccgaa tcgttgttca atatagtaaa cgcctataag aactttaccc ttcgtgaact
     8041 aatacgtcta ttaacactaa tcaatacttc agatttatcc atcacgcact ccatatattg
     8101 atcctaagta agattcctgg ttgttatcag cttgtaaata gtaaacaaaa agttaacgtt
     8161 tgcggattac tgcccaagaa taagttatca ataaccagtt tgtgatctct gaagaatatt
     8221 actaaagtta aaatgtaatc cgatttaaat atcgagtctc cttgtttcga cttaagctgg
     8281 caattggatt gccagctttc ttttaacgca ttgaaattac ctgagtaaat aacgcattca
     8341 tgtcttcagg tttttatata gcgtctggag acacggatat ttatgcaatg taatcaacgc
     8401 cagttgcaaa aaaatgaacc cggattactt atttaaccgc ccatagcatc aacgcttacg
     8461 gaactctttg ttcactttcc cacagcactt ttaaaacatt aaacctgact acggaaaata
     8521 tcagccatga taatgtttga aatggctaat ttgccattga gtgaaaaaaa ttagatgaaa
     8581 ttcagtaggt tgaaataatc actagcaggt aattatttca atgatagtgc gcaattgatc
     8641 tacaacactg cgtagcggag agagtattaa tcggatcata gtcacatcaa gtgactatga
     8701 tccgggtgac aaccggggta attattgctg cttaacgaac aaactggcga agctgaacag
     8761 gctggcggcg ctaaatatca gttcaattcc caccagtgtg gaaaccagcg ttacagacac
     8821 catcggcgtt gcaccaagga atatccaggc aatgacgata tccagcacac caataacgag
     8881 ctgtagccag ctgcctttca ttgaacgctg acgataccaa ctcatcaggc gaataacccc
     8941 tgcaacacag aacaaaccgg caataaatgc cgcaatggca aaaatgccca gctccggtgc
     9001 gcggatgaag aaatagccga tcaataaata ggcgactgcg acgaggaaac cggataatac
     9061 cggccagaaa ttatgactgc ggttgctgaa taacccgaca ataagcgcaa tacccgagca
     9121 gattaataat gcacccacta ctgtgcttaa aatatcgcca gagacgaacg ggaaactgat
     9181 acacagcaac ccgacgataa acagcagcac ggcaataaac tggattgctc tgcgatgttt
     9241 tttaagcatc tccagatcaa acttcaaaat tgttgcctta tctatatata acatagaacc
     9301 accctataaa attaagaaga aaatcccctg ctatcaatct atgccaaaaa cgcgtctaag
     9361 aatgcagtcg atttaataaa aatttcctaa ttgcagtatc tgatgcatct gtaactcatt
     9421 gtattgaaat aaaaatatct gattttgata ttttccatca acatgacata tacagaaaac
     9481 caggttataa cctcagtgtc gaaattgatt cgtgacggct ctttcacttt atagttgagg
     9541 atattacgat gaaaaaagta ttaggcgtta ttcttggtgg tctgcttctt ctgccagttg
     9601 tgagcaatgc agcggatgcg caaaaagcag ctgataacaa aaaaccggtc aactcctgga
     9661 cctgtgaaga tttcctggct gtggacgaat ccttccagcc aactgcagtt ggttttgctg
     9721 aagcgctgaa caacaaagat aaaccagaag atgcggtttt agatgttcag ggtattgcaa
     9781 ccgtaacccc agctatcgtt caggcttgta ctcagaataa acaagccaac tttaaagata
     9841 aagttaaagg cgaatgggac aaaattaaga aagatatgta attccgggaa tgcgttacat
     9901 cgtacttcct tgcatattga acaggccgga atatcttctt taaaagcagc tattcctcct
     9961 gttcatatat aatctatata ttgaatgggt tacaaaatga atatttcatc tctccgtaaa
    10021 gcgtttattt ttatgggcgc tgtagcggct ttgtcactgg tgaacgcaca atctgcgctg
    10081 gcagccaatg aatccgctaa agatatgacc tgccaggaat ttattgatct gaatccaaaa
    10141 gcaatgaccc cggttgcatg gtggatgctg catgaagaaa cagtatataa aggtggcgat
    10201 accgttactt taaatgaaac cgatctcact caaattccta aagtgatcga atactgtaag
    10261 aaaaacccgc agaaaaattt gtataccttc aaaaatcaag catctaatga cttgccgaat
    10321 taatgaggta caagtaaaaa ggagtagcaa gttgagccat cttgctgctc ctttttgcat
    10381 ttttatatga cagcagaatt tattatacgt cttatactcg cggcaattgc ctgtggcgct
    10441 attggcatgg aaaggcaaat gcgaggcaaa ggagcagggt tacgcacaca tgtattaatt
    10501 ggcatgggaa gcgccctgtt tatgattgtt tcgaaatatg gttttgctga cgtgctgtct
    10561 ttagatcacg tcggactcga ccccagccgt attgctgctc aggtggtgac gggcgtcggg
    10621 tttatcggtg caggtaacat tctcgttcgt aaccaaaata ttgtaggttt gacgacggca
    10681 gcggatatct ggatgaccgc cgctataggt atggttattg gcagtggtat gtacgaattg
    10741 ggtatgtatg gttcagtgat gaccttgctg gtgctggaag tcttccatca attaaccttc
    10801 cgcctgatga acaaaaatta ccatttacag ctgacattag tgaacggtaa tacggtatca
    10861 atgctcgact ggtttaagca gcaaaaaata aaaacggatt tagtttcgtt gcaggaaaat
    10921 gaagatcatg aagtggtcgc cattgatatc cagcttcatg ccacaacgtc gatagaagat
    10981 ctgttgcgat tattaaaagg tatggcaggg gtgaaaggcg tttcaattag ctaatctgtg
    11041 tggcagcgta gtcagactca ccgtaagcct gaaattcaca ccagataatc aatatgctga
    11101 tggcgtacca gctcattgat ccgcttaaga ttgaggatca tcatgatatt gtgtttatgg
    11161 cagtagaacg tttttagcgt tattttcagt ttctccagaa tatcctccgt tgtcatttga
    11221 ttcgcaatgc agctcagaac ctgatgttgc ttgcgcgaaa gtgacacagc cgcttcaggc
    11281 acagagcagt aactgccatt gatgagtgcg acaaaatcga tgatagtgat agtccgcgga
    11341 acaaaggtca ccggcacttt ccccaggcag cgtttaatat taaaggggga gaaaataatc
    11401 acatggacag gttttaatcg ttcaatttga gtgagaaaat tagaatgaaa tacattattc
    11461 attaatgtat caataatgac aaaggcattc tgatgcaaca ttccgtcgat ctcttcttcg
    11521 ttctgtatat gaacgacatt acctttgctc aaaatgtttt tcatcgcggt gaagaacatc
    11581 gtatccctgg taattataag aaacataacc gactcctggt gcggacatta attttataat
    11641 cagtttgcca aaggtaatta acaggacagg gcttataata ataatagtta gcttgctgtg
    11701 tattaatttt atgtaatgca cgatgcagat gctgagaaag catctgcatc tttcggtggt
    11761 gttatttgac cagctcaggt gttacctgac tcaccgcatt ggtgtagtaa ggcgcacccc
    11821 agcccggttc cggccagaat gcaccatagc cgtaatccca taggttatag gtggtattaa
    11881 ccacttctct caaatgccac acctggatgc cctgcatatt cacttccagg aagttatacg
    11941 ggactttatt gataaagcca ggttgttcac cctgaatggt accgaggatg gtaacaaagt
    12001 gattacgata gttcactggg tcaaggaagc cgctttgtct ggcgagcagt cggccctgat
    12061 agttggcttc aatatcaggt ttcgcatagc tatccaacgg taatacagcg atttctaaca
    12121 acgtatccgt tttgccattg ataacgttga taaccttccc accaaagcgc gcttgttgac
    12181 caacatataa ccccggctgg ttatgaacag caacaaaact tttttgaata tcaggttggt
    12241 tattgccttt gatattttgc ggaattgaac tacatgcggc aagcaaaaat gaaaggctga
    12301 ggatgagtgc accttttgtc atgttcatgt tactatcctt atcaacaaat attaaaacca
    12361 taatagatat ttctttatag ttttcatctg attctgaggt gatatgcctg atagtaacgt
    12421 aaacctgtct gatgtttata tcccttttgt ttagttcaat tccattgatt ttggggcgtg
    12481 gcataaagta tccatcgccc cataatataa tcctttgttt taaaattaca taaaatctat
    12541 ttttattcaa taattataaa gtgctaataa tcaatattat ggtattatat tctgataatg
    12601 atttgataag cgaattcttt tgccagatgg tatttctatt tccaccccat aatttatatc
    12661 tttttcatta ggaagtggcc tctttaaata aggcgtgtgt gacatttttt ttgggttaag
    12721 cgtctcgaat tgaaatactt cgaactgata ttcagacatt tctgcccatg tttgaatttt
    12781 attgtatcga gagagtgtcg tagaggcttt aacttgctta taacattgtt tttggaattc
    12841 ttgctgatat tttaatatgt cattgtatga aagattggtt atcctggcct ctaaaaattt
    12901 aattattgtt gaagcaattt ccgcttttgc tcgtaaaaag ttgtcattaa tggttaataa
    12961 tgttgaaaat aaaccttcga tttgtttgtc aagatattgt ccatctttat ataatttggg
    13021 gggtagggtg ttctttatgt aaaaaatagt gtcacctaaa tttgcgtcag tgaaatttat
    13081 attaagtaga tcttcgaaat aaaaccttga caaggttaga acgaacccgg aaaggttctg
    13141 tcctgtcata ttgaaatcaa taaagttggt tcc
//
LOCUS       DADMHM010000111        13163 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.112, whole genome shotgun sequence.
ACCESSION   DADMHM010000111 DADMHM010000000
VERSION     DADMHM010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13163)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13163)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13163
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.112"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            281..1834
                     /locus_tag="JN125_002673"
     CDS             281..1834
                     /locus_tag="JN125_002673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000807159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HAY8872410.1"
                     /translation="MSEFARCHYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQPEDL
                     CTIHNPMGDLQDFIALVKDAKKFGIDIIPDYTFNFMGIGGSGKNDLDYPSADIRAKIS
                     KDIESGIPGYWQGQVLIPFIKDPVTKERKQIHPEDIHLTAKDFEASKDNISKDEWENL
                     HALKEKRLNGMPKTTPKSGQVIMLQNQYVREMRKYGVRGLRYDAAKHSKHEQIERSIT
                     PPLKNYNERLHNTNLFNPKYQKKAVMNYMEYLVTCQLDEQQMSSLLYERDDLSAIDFS
                     LLMKTIKAFSFGGDLQTLASKPGSTISSIPSERRILININHDFPNNGNLFNGFLFNHQ
                     QDEQLAMAYMAALPFSRPLVYWDGQVLKSTTESKNYDGSTRVGGEAWLNKGCSTYQQL
                     YNEFHALYIDKAGIWSAFEGVFATKNVLAFSRGDSVNINHSPHDGLVIINKGNEEVEG
                     TWPNKLQPGIYKNMGSNSVNIIINNTRKIIPPGKVFTLRGGTLNINIPGRSALLLGKT
                     GEPPNYLYL"
     gene            2170..3147
                     /gene="csiD"
                     /locus_tag="JN125_002674"
     CDS             2170..3147
                     /gene="csiD"
                     /locus_tag="JN125_002674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311547.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation induced protein CsiD"
                     /protein_id="HAY8872411.1"
                     /translation="MNALIAVQNNAVDSGQDYSGFTLIPSAQSPRLLELTFTEQTTKQ
                     FLEQVAEWPVQALEYKSFLRFRVGKILDDLCANQLQPLLLKPLLNRAEGALLINAVGI
                     DDVAQADEMVKLATAVAHLIGRSNFDAMSGQYYARFVVKNVDNSDSYLRQPHRVMELH
                     NDGTYVEEITDYVLMMKIDEQNMQGGNSLLLHLDDWEHLDHYFRHPLARRPMRFAAPP
                     SKNVSKDVFHPVFDVDQQGRPVMRYIDQFVQPKDFEEGVWLSELSDAIETSKGILSVP
                     VPVGKFLLINNLFWLHGRDRFTPHPDLRRELMRQRGYFAYATHHYQTHQ"
     gene            3167..4435
                     /gene="lhgO"
                     /locus_tag="JN125_002675"
     CDS             3167..4435
                     /gene="lhgO"
                     /locus_tag="JN125_002675"
                     /EC_number="1.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417146.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-2-hydroxyglutarate oxidase"
                     /protein_id="HAY8872412.1"
                     /translation="MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESGPACHQTG
                     HNSGVIHAGVYYTPGSLKAQFCLAGNRATKAFCDQNDIRYDNCGKMLIATSDLEMERM
                     RALWERTAANGIEREWLNAEELREREPNITGLGGIFVPSSGIVSYREVTAAMAKIFQA
                     RGGEIIYNAEVSALSEHKNGVVVRTRQGGEYEASTLISCSGLMANRLVKMLGLEPGFI
                     ICPFRGEYFRLAPEHNQIVNHLIYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLAFKR
                     EGYRKRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKSGYLRLVQKYCPRLS
                     LSDLQPWPAGVRAQAVSPDGKLIDDFLFVTTPRTIHTCNAPSPAATSAIPIGAHIVSK
                     VQTLLASQSNPGRTLRATRSVDALHAAFNQ"
     gene            4458..5893
                     /gene="gabD"
                     /locus_tag="JN125_002676"
                     /pseudo
     CDS             4458..5893
                     /gene="gabD"
                     /locus_tag="JN125_002676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311549.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent succinate-semialdehyde
                     dehydrogenase"
     gene            5907..7173
                     /gene="gabT"
                     /locus_tag="JN125_002677"
                     /pseudo
     CDS             5907..7173
                     /gene="gabT"
                     /locus_tag="JN125_002677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417148.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="4-aminobutyrate--2-oxoglutarate transaminase"
     gene            7411..8811
                     /gene="gabP"
                     /locus_tag="JN125_002678"
     CDS             7411..8811
                     /gene="gabP"
                     /locus_tag="JN125_002678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GABA permease"
                     /protein_id="HAY8872413.1"
                     /translation="MGQSSQPHELGGGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAG
                     PAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFW
                     VLVIPLEANIAAMILHSWVPGIPIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKV
                     IAILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAE
                     IVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSV
                     LELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKINRSKTP
                     YVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRAE
                     GSEIRLRMWLYPWLTWLVIGFITFVLVVMLFRPAQQLEVISTDLLAIGIICTVPIMAR
                     WNKLIMWQKTPVHNTR"
     gene            8832..9494
                     /gene="csiR"
                     /locus_tag="JN125_002679"
     CDS             8832..9494
                     /gene="csiR"
                     /locus_tag="JN125_002679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311552.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator CsiR"
                     /protein_id="HAY8872414.1"
                     /translation="MTITSLDGYRWLKNDIIRGNFQPDEKLRMSLLTSRYALGVGPLR
                     EALSQLVAERLVTVVNQKGYRVASMSEQELLDIFDARANMEAMLVSLAIARGSDEWEA
                     EVLAKAHLLSKLEACDASEKMLDEWDLRHQAFHTAIVAGCGSHYLLQMRERLFDLAAR
                     YRFIWLRRTVLSVEMLEDKHDQHQTLTAAVLARDTARASELMRQHLLTPIPIIQQAMA
                     GN"
     gene            complement(9495..9944)
                     /gene="kbp"
                     /locus_tag="JN125_002680"
     CDS             complement(9495..9944)
                     /gene="kbp"
                     /locus_tag="JN125_002680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium binding protein Kbp"
                     /protein_id="HAY8872415.1"
                     /translation="MGLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLSKTGIPDAD
                     KVNIQIADGKATVTGDGLSQEAKEKILVAVGNISGIASVDDQVKTATPATASQFYTVK
                     SGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRIPEE"
     gene            complement(10028..10186)
                     /locus_tag="JN125_002681"
     CDS             complement(10028..10186)
                     /locus_tag="JN125_002681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqaE/Pmp3 family membrane protein"
                     /protein_id="HAY8872416.1"
                     /translation="MGFWRIVITIILPPLGVLLGKGFGWAFIINILLTLLGYIPGLIH
                     AFWVQTRD"
     gene            10369..10668
                     /locus_tag="JN125_002682"
     CDS             10369..10668
                     /locus_tag="JN125_002682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAY8872417.1"
                     /translation="MTELAQLQASAEQAAALLKAMSHPKRLLILCMLSGSPGTSAGEL
                     TRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATLKNVYCP"
     gene            10678..11202
                     /gene="ygaP"
                     /locus_tag="JN125_002683"
     CDS             10678..11202
                     /gene="ygaP"
                     /locus_tag="JN125_002683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase YgaP"
                     /protein_id="HAY8872418.1"
                     /translation="MALTTISPHDAQELIARGAKLIDIRDADEYLREHIPEADLAPLS
                     VLEQSGLPPKLRREQIIFHCQAGKRTSNNADKLAAIAAPAEIFLLEDGIDGWKRAGLP
                     VAVNKSQPLPLMRQVQIAAGGLILIGVVLGYTVNSGFFLLSGFVGAGLLFAGISGFCG
                     MARLLDKMPWNQRA"
     gene            complement(11249..11653)
                     /gene="stpA"
                     /locus_tag="JN125_002684"
     CDS             complement(11249..11653)
                     /gene="stpA"
                     /locus_tag="JN125_002684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein StpA"
                     /protein_id="HAY8872419.1"
                     /translation="MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEE
                     EQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDV
                     NGETKTWTGQGRTPKPIAQALAEGKSLDDFLI"
     gene            12306..12755
                     /gene="alaE"
                     /locus_tag="JN125_002685"
     CDS             12306..12755
                     /gene="alaE"
                     /locus_tag="JN125_002685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-alanine exporter AlaE"
                     /protein_id="HAY8872420.1"
                     /translation="MFSPQSRLRHAVADTFAMVVYCSVVNMCIEVFLSGMSFEQSFYS
                     RLVAIPVNILIAWPYGMYRDLFMRAARKVSPSGWIKNLADILAYVTFQSPVYVAILLV
                     VGADWHQIMAAVSSNIVVSMLMGAVYGYFLDYCRRLFKVSRYQQVKA"
     gene            complement(12792..13136)
                     /locus_tag="JN125_002686"
     CDS             complement(12792..13136)
                     /locus_tag="JN125_002686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgaC family protein"
                     /protein_id="HAY8872421.1"
                     /translation="MYLRPDEVARVLEKVGFTVDVVTQKAYGYRRGENYVYVNREARM
                     GRTALVIHPTLKERSSTLAEPASDIKTCDHYQQFPLYLAGERHEHYGIPHGFSSRVAL
                     ERYLNGLFGEAS"
BASE COUNT         3297 a         3222 c         3345 g         3299 t
ORIGIN      
        1 agtattaaga ctatcactta tttaagtgat actggttgtc tggagattca gggggccagt
       61 ctagctggca gccgatgtat ataatattaa cgtgacgtca ccttccggac agcaagaaac
      121 atttaaaata ctaatcaatc cagaacatct acggcaaaca cttgagcgta aatctcttac
      181 tgctgttcag aaatcacaat gtgaaatcat tacccccaaa aaacctggcg aagcgattct
      241 tcatgctttt aatgccacct accagcaaat cagggaaaat atgtctgagt ttgcacgttg
      301 ccattatggg tatatacaaa tccctccagt gacaactttc cgcgccgacg gaccagaaac
      361 tcccgaagaa gaaaaaggtt actggtttca tgcttatcaa cccgaagatc tttgtaccat
      421 ccataaccca atgggagatt tgcaggattt tatcgcattg gttaaagatg ctaaaaaatt
      481 tggtatcgat atcattcctg attatacatt taactttatg ggaatcgggg gtagtggtaa
      541 aaatgacctg gattatccct ctgctgatat acgagcgaag atcagtaaag atatagaaag
      601 cggtatccct ggctattggc aaggtcaggt tttgattcca ttcattaaag atccagtaac
      661 aaaagaacgt aaacaaatcc atccagaaga tatacatctc actgcaaaag acttcgaagc
      721 aagtaaagat aacatctcta aggatgaatg ggaaaacctc catgcattaa aagaaaagcg
      781 tttaaatgga atgcctaaaa caacacccaa aagtggccag gttattatgt tgcaaaatca
      841 atacgttcga gaaatgcgaa aatatggcgt acgaggttta cgttatgatg cggcaaaaca
      901 ctcaaaacat gaacaaatag agaggtcgat aaccccaccg cttaaaaatt ataatgagcg
      961 gttacacaat actaatttat ttaacccaaa atatcaaaaa aaagccgtta tgaattacat
     1021 ggaatacctg gtaacttgtc agttggatga acaacaaatg tcatcactgc tttatgagag
     1081 agatgattta agtgccattg atttttcttt actcatgaaa acgataaaag ccttttcatt
     1141 tggtggagat ctccaaaccc ttgcatcaaa accgggttcc acaatctcaa gtatcccatc
     1201 agaaagacgg atattgatta acattaacca cgattttcct aacaatggta atcttttcaa
     1261 tggctttcta tttaaccatc aacaagatga acaattagca atggcatata tggccgctct
     1321 cccgttcagc agacctttag tttactggga tggccaagta ttaaaatcaa cgactgaaag
     1381 taaaaattat gatgggtcca cgcgtgtcgg cggtgaggcg tggcttaata aaggttgctc
     1441 tacctatcag cagctctaca atgaattcca cgcattatat atagataaag caggaatatg
     1501 gagcgcattt gagggtgtat ttgcaactaa aaacgttctg gcctttagtc gtggggattc
     1561 tgtgaacatt aatcactctc ctcatgatgg actagttata ataaataaag gaaacgaaga
     1621 agttgaaggt acctggccta acaaattgca acctggaata tacaaaaaca tggggagtaa
     1681 tagcgttaat attattatta ataatacccg aaaaattatc ccccctggta aagtatttac
     1741 gcttagaggc ggaactctaa atatcaatat tcctgggcgt agcgctcttc ttttagggaa
     1801 aacaggagaa ccgccgaact atctctattt ataatttaat gttatatctg ccccgataaa
     1861 acggggcaga taatatgttt agtttactaa cggtcatttt gcagtgaagc catttactgt
     1921 tttttatcga ccagataatc tgttctctaa tgttaactcc ccctaacctg ttgctttagt
     1981 tattcatttc ctgtctcact ttgccttaat accctacgtt aaatgttact aatttgttgt
     2041 ttttgatcac aataagaaaa caatatgtcg cttttgtgcg catttttcag aaatgtagat
     2101 atttttagat tatggctacg aaatgagcat cgccatgtca ccctacatct cataagagga
     2161 tcgcttctga tgaatgcact gatcgccgta caaaataacg ctgtcgattc aggccaggac
     2221 tatagcggat tcactctcat cccgtcggcg caatccccgc gtctgctgga actcaccttc
     2281 accgaacaga cgaccaaaca gtttctcgaa caggttgccg aatggcccgt gcaggcgctg
     2341 gagtacaaat cgtttctgcg ttttcgggta ggcaaaattc ttgacgatct gtgtgcgaat
     2401 cagctgcaac cattgctgtt gaagcccctg ctaaaccgtg ctgaaggtgc gctgttgatc
     2461 aatgcggtgg gtatcgatga tgtggcgcag gcagatgaga tggtgaagct ggcaacggcg
     2521 gtagcgcatc tgattggtcg ctcaaatttc gatgcgatga gcggtcagta ttacgcgcgt
     2581 ttcgtggtga aaaatgtcga taactcagac agctatctgc gtcagccgca ccgcgtgatg
     2641 gaactgcaca acgacggcac gtatgtcgaa gagatcaccg attacgtgct gatgatgaaa
     2701 atcgatgagc aaaacatgca gggtggaaat tcgttgctgc tgcatctcga tgactgggaa
     2761 catctggacc actatttccg ccatccactg gcgcgtcgcc cgatgcgctt tgccgcgccg
     2821 ccgagcaaaa acgtcagcaa agatgttttc catccagtgt tcgacgttga tcaacagggt
     2881 cgcccggtga tgcgctatat cgaccagttc gtccagccaa aagattttga agaaggcgtg
     2941 tggttgagcg agctttccga tgccattgaa accagcaaag gcattctttc tgtacccgtt
     3001 cccgttggca aattcctgtt gataaacaac ctgttctggc tgcacggtcg cgaccgcttt
     3061 actccgcacc cggatctgcg ccgtgaactg atgcgtcagc gtggctattt cgcttacgcc
     3121 actcaccact accagacgca tcagtaagcg caaaggaatt gagcggatgt atgattttgt
     3181 gattattggc ggcggcatca tcggcatgtc gaccgccatg caactgattg atgtttatcc
     3241 ggatgcccgc attgcgttgc tggaaaaaga gtccggcccg gcctgtcacc agacgggcca
     3301 caacagcggc gtgatccatg ccggggtcta ttacacgccc ggcagcctga aggcgcagtt
     3361 ttgcctggcg ggaaaccgcg ccaccaaagc cttttgcgat caaaacgaca ttcgctatga
     3421 caactgcggc aagatgctga tcgccacgtc cgatctcgaa atggaacgga tgcgcgcgtt
     3481 gtgggaacgc acggcggcga acggtatcga gcgcgagtgg ttaaacgccg aggaactgcg
     3541 cgagcgcgaa ccgaatatca ccgggctcgg cggcattttt gtgccgtcca gcggcattgt
     3601 cagctatcgc gaagtcacag cggcaatggc aaaaatcttc caggccagag gcggtgagat
     3661 tatttataac gccgaagtca gcgccctcag tgagcataaa aacggcgtgg tcgtccgaac
     3721 ccgtcagggc ggcgaatatg aagcatcgac gctgattagc tgttccgggc tgatggctaa
     3781 ccggctggtg aaaatgctcg gcctcgaacc gggttttatt atctgcccgt tccgtggcga
     3841 gtatttccgc cttgcgccgg agcataacca gattgttaac catctgattt accccatccc
     3901 tgacccggca atgccgtttt tgggcgtgca tctcacccgc atgatcgacg gcagcgtgac
     3961 cgtcgggcca aacgcggtgc tggcttttaa acgcgaaggc tatcgcaagc gcgacttctc
     4021 atttagcgac acgctggaaa ttttaggctc gtcggggatt cgccgggtgc tgcaaaacca
     4081 tctacgctca ggactgggcg agatgaaaaa ctcgctgtgc aaaagcggct atctgcggct
     4141 ggtgcaaaag tattgtcccc ggctttcgtt aagcgatctc cagccctggc ccgccggtgt
     4201 gcgggcgcag gcggtatcgc cggacggcaa gctgattgac gattttctgt ttgtcaccac
     4261 cccgcgcacg atccacacct gcaatgcgcc ctccccggca gcgacatcag caattcctat
     4321 tggtgcgcat attgtcagca aggtacaaac gctgttggca agccagagta accccggacg
     4381 cacgctgcga gcgacacgta gtgtggatgc cttacacgcc gcatttaatc aataaccttt
     4441 gaaaacagga cgtaacaatg aaacttaacg acagtaactt attccgccag caggcgttga
     4501 ttaacgggga atggctggac gccaacaatg gcgggatcat cgacgtcacc aatccggcga
     4561 acggcgacaa gctgggtagc gtgccgaaaa tgggcgctga tgaaacccgc gccgctatcg
     4621 acgccgccaa ccgcgccctg cccgcctggc gtgcgctcac cgccaaagaa cgcgccaaca
     4681 ttctgcgcaa ctggttcaat ttgatgatgg agcatcagga cgatttagcg cgcctgatga
     4741 ccctcgaaca gggcaaacca ctggccgaag cgaaaggcga aatcagctac gctgcctctt
     4801 ttattgagtg gtttgccgaa gaaggcaaac gtatttatgg cgataccatt cccggtcatc
     4861 aggccgataa gcgcctgatt gttatcaagc agccgattgg cgttaccgca gctatcacgc
     4921 cgtggaactt cccggcggcg atgattaccc gtaaagccgg tccggcgctg gcggcaggct
     4981 gcaccatggt gctgaagccc gccagtcaga caccgttctc tgcgctggcg ctggcggagc
     5041 tggcgattcg cgcgggcatt ccggctggcg tgtttaacgt ggtcaccggt tcggcaggcg
     5101 cggtcggtaa tgaactgacc agcaacccgc tggtacgcaa actgtcgttt accggttcga
     5161 ccgaaattgg ccgacagtta atggaacagt gcgcgaaaga catcaaaaaa gtgtcgctgg
     5221 agctgggcgg caacgcgccg tttatcgtct ttgacgatgc cgatctcgat aaagccgtgg
     5281 aaggcgcgct ggcctcgaaa ttccgcaacg ccgggcaaac ctgcgtctgc gccaaccgtt
     5341 tggcgtgtat gaccgctttg ccgaaaaatt gcagcaggcg gtgagcaaac tgcacatcgg
     5401 cgacgggctg gataaaggcg tcaccatcgg gccgctgatc gatgaaaaag cggtagcaaa
     5461 agtggaagag catattgccg atgcgctgga gaaaggtgcg cgtgtggttt gcggcggtaa
     5521 agcggatgaa cgcggcggca acttcttcca gccgaccatt ctggtggacg tgccggccaa
     5581 cgccaaagtg tcgaaagaag agacgttcgg ccccctcgcc ccgctgttcc gctttaaaga
     5641 tgaagccgat gtgattgcgc aagccaatga caccgagttt ggccttgccg cctatttcta
     5701 cgcccgtgat ttaagccgcg tcttccgcgt gggcgaagcg ctggagtacg gcatcgtcgg
     5761 catcaatacc ggcattattt ccaatgaagt ggccccgttc ggcggcatca aagcctcggg
     5821 tctgggtcgt gaaggttcga agtatggcat cgaagattac ttagaaatca aatatatgtg
     5881 catcggtctt taactggaga atgcgaatga acagcaataa agagttaatg cagcgccgca
     5941 gtcaggcgat tccccgtggc gttgggcaaa ttcacccgat tttcgctgac cgcgcggaaa
     6001 actgccgggt gtgggacgtt gaaggccgtg agtatcttga tttcgtgggc gggattgcgg
     6061 tgctcaatac cgggcacctg catccgaagg tggtggccgc ggtggaagcg cagttgaaaa
     6121 aactgtcgca cacctgcttc caggtgctgg cttacgagcc gtatctggag ctgtgcgaga
     6181 ttatgaatca gaaggtgccg ggcgatttcg ccaagaaaac gctgctggtt acgaccggtt
     6241 ccgaagcggt ggaaaacgcg gtaaaaatcg cccgcgccgc caccaaacgt agcggcacca
     6301 tcgcttttag cggcgcgtat cacgggcgca cgcattacac gctggcgctg accggcaagg
     6361 tgaatccgta ctctgcgggc atggggctga tgccgggtca tgtttatcgc gcgctttatc
     6421 cttgcccgct gcacggcata agcgaggatg acgctatcgc cagcatccac cggatcttca
     6481 aaaatgatgc cgcgccggaa gatatcgccg ccatcgtgat tgagccggtt cagggcgaag
     6541 gcggtttcta cgccgcgtcg ccagccttta tgcagcgttt acgcgctctg tgtgacgagc
     6601 acgggatcat gctgattgcc gatgaagtgc agagcggcgc ggggcgtacc ggcacgctgt
     6661 ttgcggtgga gcagatgggc gtggcgccgg atcttaccac ctttgcgaaa tcgatcgctg
     6721 gcgggcgtca ccgggcgcgc ggaagtgatg gacgctgttg caccgggcgg tctgggcggc
     6781 acctatgccg gtaacccgat tgcctgcgtg gctgcgctgg aagtgttgaa ggtgttcgag
     6841 caggaaaatc tgctgcaaaa agccaacgat ctggggcaga agctaaaaga cggattgttg
     6901 gcgatagccg aaaaacaccc ggagatcggc gacgtacgcg ggctgggagc gatgattgcc
     6961 atcgagctgt ttgaagatgg cgatcacagc aaaccggacg caaaactcac cgccgggatc
     7021 gtggcacgcg cccgcgataa gggcctgatt cttctctcct gcggcccgta ttacaacgtg
     7081 ctgcgcatcc ttgtaccgct caccattgaa gacgctcaga tccgtcaggg tctggagatt
     7141 atcggtcagt gttttgatga ggcgaagcag tagcaccgtc cccatgcagg aggcgacgct
     7201 gcgcgtcttg tccggcctac gagaatccag gtcggataag gcgtttacgc cgcatccgac
     7261 aatctgtacg tgaacaggaa taaatctatg tcggccggat aatgcggagc cgctctccgg
     7321 caaaaagaat caataacaat taaacgcgtg acccggcgcg ggaaatgtcg gggcgctctc
     7381 ccaagtgaca cactttcgag aggattcagg atggggcaat catcgcaacc acatgagtta
     7441 ggcggcgggc tgaaatcacg ccacgtcacc atgttgtcta ttgccggtgt tatcggcgca
     7501 agtctgtttg tcggttccag cgtcgccatc gccgaagcgg gcccggcggt attactggcc
     7561 tatctgttcg ccgggctact ggtggttatg attatgcgga tgttggcgga aatggcggtt
     7621 gccacgcccg ataccggttc gttttccacc tatgccgata aagccattgg tcgctgggcg
     7681 ggctatacca tcggctggtt gtactggtgg ttttgggtac tggttatccc gctggaagcc
     7741 aacatcgccg ccatgatcct gcactcgtgg gttccaggca ttcccatctg gttattttcc
     7801 ctcgtcatta cccttgcctt aactggcagt aatttattaa gcgttaaaaa ctacggcgaa
     7861 tttgagttct ggctggcgct gtgcaaagtc atcgctatcc tggcctttat tttccttggt
     7921 gcagtcgcaa ttagcggttt ttacccttat gccgaagtga gcgggatctc aagattgtgg
     7981 gatagcggcg gctttatgcc caacggcttc ggtgcggtat taagcgcgat gttgatcacc
     8041 atgttctcgt ttatgggcgc agaaattgtc accattgccg ccgcggaatc cgacacgccg
     8101 gaaaaacata ttgtccgcgc cactaactcg gttatctggc gtatttctat cttctatttg
     8161 tgctctattt ttgtcgtcgt ggcattaatt ccgtggaata tgcccggact aaaagccgtc
     8221 ggttcttatc gctcggtact ggaattgctc aatattcccc atgcgaaatt aatcatggac
     8281 tgtgtgatat tactttccgt aaccagctgc ctgaactcgg cgctgtatac cgcttccagg
     8341 atgctctact ccttaagccg tcgcggagat gcgcctgcgg taatgggtaa aatcaaccgc
     8401 agtaaaaccc cgtacgtggc ggtgttactc tccaccggcg cggcattctt aacggtggtg
     8461 gtgaactatt acgcgcctgc gaaggtattt aaatttctga tcgacagctc cggcgctatc
     8521 gccctgctgg tttatttagt catcgccgtt tcacagttgc ggatgcgcaa aattctgcga
     8581 gcagaaggaa gcgaaattcg cttgcgcatg tggctttatc cctggctcac ctggctggtc
     8641 atcggcttta ttacctttgt gttggtagtg atgctattcc gcccggcgca acagttagaa
     8701 gtgatctcca ccgacttatt agcaataggg attatctgta ccgtgccaat tatggcgcgc
     8761 tggaataagc tgataatgtg gcaaaaaaca cccgttcata atacgcgctg ataataatca
     8821 ggagtcacac catgaccatt acgtctctgg atggctatcg ctggctgaag aacgatatta
     8881 ttcgcggtaa ttttcaaccg gatgaaaaat tacggatgag tttgctgaca tcgcgttatg
     8941 cacttggcgt tgggccgttg cgggaagcac tttctcaact ggtggcggaa cggctggtca
     9001 cggtggtgaa tcaaaaaggg tatcgggtgg cgtctatgtc agagcaggag ctgctcgata
     9061 ttttcgatgc ccgcgccaat atggaagcga tgttagtgag tctggcgatt gcccgcggta
     9121 gcgatgagtg ggaggcagaa gttctcgcaa aagcgcatct gctcagtaag ctggaagcct
     9181 gtgacgccag cgagaaaatg cttgatgagt gggatctgcg tcatcaggcg tttcatacag
     9241 caattgtggc gggctgtggt tctcactatt tgctgcaaat gcgtgaacgg ttgtttgatc
     9301 tggcggcgcg ctatcgattt atctggctgc ggcgaacggt gctttcggta gaaatgctgg
     9361 aggataaaca cgatcagcac cagaccctga ctgcggcggt actggcgcga gataccgcgc
     9421 gcgccagtga gttaatgcgc cagcatttac tgacgccaat tcccattatc cagcaggcga
     9481 tggctggcaa ttaactactc ttccggaata cgcaacactt gccccggata aattttatcc
     9541 gggcttttta gcatcggttt attcgcttcg aagattttat tgtacagatt agcgttaccg
     9601 tagacctgtt tggaaatggc actcagagtg tcgccagact taacggtata aaactggctg
     9661 gcagtggctg gtgtcgccgt tttcacctga tcatcaacac tggcaatacc ggaaatattc
     9721 cccaccgcaa caaggatttt ctccttcgcc tcctgactca ggccgtcacc agtgaccgtc
     9781 gctttgccgt cggcaatttg aatgttcact ttatcggcat caggtatacc ggttttgctc
     9841 agatgctcct gcaccttctt cgcctgatcg tctttatcgt gctgacctgt aaccgcgtcc
     9901 cagagttttt ctccggcatc tttcacaaaa ttgaacagac ccatagctac ctcattcgtt
     9961 aacggaaaca ctcagaaagt gtagcagagg aacgcggcgc gttaacgccg cgggggggag
    10021 cacaggttta atcgcgggtt tgcacccaga acgcgtgaat caaaccgggg atatacccaa
    10081 gcagtgtcag cagaatatta ataatgaacg cccaaccgaa ccctttaccg agcagcacgc
    10141 cgagcggcgg cagaatgatg gtgatgacga ttctccagaa acccatatgt actccctata
    10201 agaaaattac tcattgttta aaaagagatt ttatctctta agcgtagtaa ttttagcgga
    10261 gcctgccagt ttcagcttac gcttttactc tcatttacgc tgctgaggct ggtatatgtt
    10321 gcatttttag tttagagttt acttaattta gaaaatactt aaataaatat gactgaactc
    10381 gcgcaattac aggccagtgc cgaacaggca gcggccttat tgaaagcaat gagccatcct
    10441 aaacgattgc tgattctgtg catgcttagc ggttcccccg gcaccagcgc gggagagctg
    10501 acgcgcatta ccggactgag tgcctctgcg acatcacagc atctcgctcg tatgcgggac
    10561 gaagggctta tcgacagcca acgggatgcc caacgcattc tatattccat taaaaatgag
    10621 gcggtaaatg ctattatcgc caccctgaaa aatgtctatt gtccgtaagg agtcactatg
    10681 gctttgacaa ccatttcgcc gcatgatgca caagaattaa tcgcacgcgg cgcaaagtta
    10741 atcgatattc gtgacgctga tgaatatctt cgtgaacata ttcctgaagc agatctggct
    10801 ccattatccg tgctggaaca gtcaggtctt ccacctaaat tacgtcgcga gcaaattata
    10861 ttccactgcc aggcaggtaa acgcaccagt aataacgccg ataaattagc agcgattgcc
    10921 gctcccgcag aaatattttt actcgaagat gggattgatg gctggaaaag agctggattg
    10981 ccagtagcgg taaataaatc tcaacccttg ccgttaatgc gccaggtgca gatcgctgcg
    11041 ggtggtttaa tattaatcgg cgttgtactg ggttataccg taaatagcgg tttcttctta
    11101 ttaagtggct ttgttggtgc cgggttactg tttgcaggaa tcagcggttt ttgtggaatg
    11161 gcaaggttgt tagataagat gccgtggaac caacgagctt gagaagcgac gccggacgcg
    11221 ccctagcagc gacatccggc ctcagtaatt agatcaggaa atcgtcgaga gatttacctt
    11281 ctgccagcgc ctgagcaatt ggcttcggtg tacggccctg accggtccag gtcttagttt
    11341 caccgttaac atcagtgaat ttatatttcg ccggacgcgg ctggcgtttt ttaccagcac
    11401 gtggtgcagc agcagagcta ttacccaata actcttccgg gttaattccg tcagctttca
    11461 tcagctccag ccaggtgcta attttttcct gacgctcagc cagttcacgc tgctgctgtt
    11521 cttcttcttc acgtctttct ttagtgacaa ccctgaattt ttcgagcatt tcttcaagaa
    11581 cgtcaatgga gaattcgcga gccatcgcac ggagggttcg aatgttattt aaactttgta
    11641 acattacgga cataataaag aaaacctttt aacgccaaaa caaaaaagta tttcgtcgcg
    11701 tagtgtaagc gatcacttat tatatttcca caaaatttaa tctatttaca gtcctgcgcg
    11761 agattatttc agctgttatt ttctgaaact ctcagaataa tttcaagatt atatattagc
    11821 cattttgatg agtaatttag gttattggtg aacagagtgg cgctctctgc tcgctaactc
    11881 cgcaagcctg ataaaaccga agtgaataaa aatgcaatat aacagaataa aagaaaacac
    11941 ccctcactgg tgctttctgc tgttaatgta cattttctgg catcaaaaat gctgtaaatg
    12001 acccggtcac gacaaacacc gaattctcta cgcttatagc gttacctcac ccccaaactt
    12061 aaaggcaagg tcatatccaa ttgatttgat tgaaaataaa tcatatcggc atgtaaaaat
    12121 ccacaatgta caaaaaacga gccgttatgg aatattttat ctacaaaaac tgactaaata
    12181 aaagtttttc actaattgat tagtcatagc cagcgatata cgctatgcga aaatgcagat
    12241 ggcaatgaga tccactgctt tcatctccat taacatccca ttacgcttta ttaaggagca
    12301 ttagcatgtt ctcaccgcag tcacgcttgc gtcatgcagt tgcagatacg ttcgcgatgg
    12361 ttgtttactg ttctgtcgtg aacatgtgta ttgaagtttt cctctccgga atgagcttcg
    12421 aacagtcttt ttattccaga ttggtagcga ttccggtgaa catcttaatt gcatggccat
    12481 acggtatgta ccgcgatctg tttatgcgcg cggcacgcaa agttagcccg tcgggctgga
    12541 taaaaaatct ggctgatatc ctggcttatg tgacgttcca gtcaccggtg tatgtggcga
    12601 tcttgttagt ggtgggcgca gactggcatc agattatggc ggcggtcagt tcaaacatcg
    12661 ttgtttcgat gttgatgggg gcggtttatg gctacttcct cgattattgc cgccgactgt
    12721 ttaaagtcag ccgttaccag caggtaaaag cctgactctt cttttcgcga ctggcatcgc
    12781 cagtcgcgtc tttaactggc ttcgccaaat aaaccattca aataacgttc aagcgcaaca
    12841 cgcgaactga agccatgcgg gataccgtaa tgctcgtgtc gctcgcctgc taaatagagc
    12901 ggaaattgct ggtaatgatc gcaagtttta atatcggaag cgggttcagc cagtgttgaa
    12961 ctgcgttctt ttaatgttgg atgaattacc agagcggtac gtcccattcg cgcttcgcga
    13021 ttaacataga cataattttc cccacggcgg taaccatacg ctttctgggt taccacatcg
    13081 acagtaaaac cgactttttc aagtacgcgc gccacctcgt ctggtcgtaa atacatattt
    13141 gatcctcgtt attttcaacc gcg
//
LOCUS       DADMHM010000112        13145 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.113, whole genome shotgun sequence.
ACCESSION   DADMHM010000112 DADMHM010000000
VERSION     DADMHM010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13145)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13145)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13145
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.113"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..469)
                     /locus_tag="JN125_002687"
     CDS             complement(<1..469)
                     /locus_tag="JN125_002687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stationary phase growth adaptation protein"
                     /protein_id="HAY8872422.1"
                     /translation="MKQEVEKWRPFGHPDGDIRDLSFLDAHQAVYVQHHEGKEPLEYR
                     FWVTYSLHCFTKDYEHQTNEEKQSLMYHAPKESRPFCQHRYNLARTHLKRTILALPES
                     NVIHAGYGSYAVIEVDLDGGDKAFYFVAFRAFREKKKLRLHVTSAYPISEKQKG"
     gene            complement(682..4905)
                     /gene="rpoC"
                     /locus_tag="JN125_002688"
     CDS             complement(682..4905)
                     /gene="rpoC"
                     /locus_tag="JN125_002688"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HAY8872423.1"
                     /translation="MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETI
                     NYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERM
                     GHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQIL
                     TEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLT
                     KRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN
                     NRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGK
                     QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT
                     TIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH
                     PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL
                     GLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAK
                     TSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQI
                     MYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKV
                     IDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQL
                     AGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTR
                     RLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADI
                     LVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEA
                     IGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGK
                     LVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITE
                     VSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDV
                     LIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFE
                     ARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV
                     ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR
                     KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFI
                     SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEA
                     PAAPQVTAEDASASLAELLNAGLGGSDNE"
     gene            complement(4982..9010)
                     /gene="rpoB"
                     /locus_tag="JN125_002689"
     CDS             complement(4982..9010)
                     /gene="rpoB"
                     /locus_tag="JN125_002689"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HAY8872424.1"
                     /translation="MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE
                     GQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRL
                     VIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD
                     KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE
                     QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ
                     LEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIE
                     TLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSE
                     DRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGN
                     RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS
                     SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG
                     PNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD
                     EEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG
                     ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE
                     MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQ
                     NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN
                     VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK
                     DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLF
                     SRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLE
                     AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYD
                     ENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQ
                     RAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL
                     PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK
                     AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
                     ESFNVLLKEIRSLGINIELEDE"
     gene            complement(9330..9695)
                     /gene="rplL"
                     /locus_tag="JN125_002690"
     CDS             complement(9330..9695)
                     /gene="rplL"
                     /locus_tag="JN125_002690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005122872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HAY8872425.1"
                     /translation="MSITKDQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVAVAAG
                     PVEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKD
                     DAEALKKALEEAGAEVEVK"
     gene            complement(9762..10259)
                     /gene="rplJ"
                     /locus_tag="JN125_002691"
     CDS             complement(9762..10259)
                     /gene="rplJ"
                     /locus_tag="JN125_002691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002438625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HAY8872426.1"
                     /translation="MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKA
                     GREAGVYMRVVRNTLLRRAVEGTPFECLKDAFVGPTLIAYSMEHPGAAARLFKEFAKA
                     NAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRD
                     AKEAA"
     gene            complement(10672..11376)
                     /gene="rplA"
                     /locus_tag="JN125_002692"
     CDS             complement(10672..11376)
                     /gene="rplA"
                     /locus_tag="JN125_002692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HAY8872427.1"
                     /translation="MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFVESVDV
                     AVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLAD
                     QIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQ
                     VRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTM
                     GAGVAVDQAGLSASVN"
     gene            complement(11380..11808)
                     /gene="rplK"
                     /locus_tag="JN125_002693"
     CDS             complement(11380..11808)
                     /gene="rplK"
                     /locus_tag="JN125_002693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006121495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HAY8872428.1"
                     /translation="MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNA
                     KTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKIS
                     RAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED"
     gene            complement(11968..12513)
                     /gene="nusG"
                     /locus_tag="JN125_002694"
     CDS             complement(11968..12513)
                     /gene="nusG"
                     /locus_tag="JN125_002694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005280494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HAY8872429.1"
                     /translation="MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMV
                     PTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAP
                     ISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV
                     SVSIFGRATPVELDFSQVEKA"
     gene            complement(12515..12898)
                     /gene="secE"
                     /locus_tag="JN125_002695"
     CDS             complement(12515..12898)
                     /gene="secE"
                     /locus_tag="JN125_002695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007665874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HAY8872430.1"
                     /translation="MSANTEAQGSGRGLEAMKWVVVVALLLVAIVGNYLYRDIMLPLR
                     ALAVVILIAAAGGVALLTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTA
                     VMSLILWGLDGILVRLVSFITGLRF"
BASE COUNT         3060 a         3555 c         3223 g         3307 t
ORIGIN      
        1 tacctttctg tttttcagaa atgggataag cgctagttac atgcaaacgg agttttttct
       61 tttccctgaa agccctgaac gcaacaaagt aaaatgcctt atctcctccg tctaagtcca
      121 cctcaatcac ggcatagcta ccatacccgg catgaataac gttgctttct ggcagcgcca
      181 aaatagttct ttttaagtgt gtgcgcgcta agttataacg gtgctggcag aagggacgag
      241 attctttagg cgcgtggtac attaacgatt gtttttcttc gttcgtctga tgttcataat
      301 cttttgtgaa gcagtgaaga gagtaggtaa cccaaaagcg atactctaaa ggctctttgc
      361 cctcatgatg ctgaacgtag acagcctgat gagcatcaag aaatgataaa tcacgaatat
      421 caccatccgg atgtccaaaa ggtcgccact tttccacttc ctgtttcatt ctcgttcctt
      481 aagaaagtta cacaggaata gtatcgaatc cttgccgagt ttgactcaat tagttcagtc
      541 agtttcagga tattagtcat ctctacattg attatgagta ttcagaaatt ccttaaatat
      601 tctgacaaat gctctttccc taaactcccc ccataaaaaa acccgccgaa gcgggttttt
      661 acgttatttg cggattaacg attactcgtt atcagaaccg cccagacctg cgttcagcag
      721 ttctgccagg ctggcagatg cgtcttctgc agtcacctgc ggtgcagccg gagcttcacc
      781 cgcagcacgg cgacgcatac gatcctggtg gtacgcgtaa ccggtacctg ccgggatcag
      841 acgacccacg ataacgttct ctttcaggcc gcgcagttcg tcgcgtttgc ccgcaacggc
      901 tgcttcggtc agcacgcgag tggtctcctg gaacgatgcc gcggagatga aggactcggt
      961 tgccagagac gctttggtga tacccagcag atcgcgggag taagttgcac ccactttgcc
     1021 gttcgcttcc agttcgcggt ttgcgatctt gacgcgagag tattcaacct gttcgccttc
     1081 caggaagtcg gagctgcccg cgttaacgat ggtagcttta cgcagcatct gacgaacgat
     1141 aacttcgatg tgtttatcgt taatcttaac gccctgcaga cggtatacgt cctgtacttc
     1201 gttaacgatg taacgagtaa cagcatgaac accacgcaga cgcagaatgt cgtgcggcgc
     1261 ttccggaccg tcggaaatta cgtcaccacg ttctacacgt tcaccttcga acacgttgag
     1321 ctgacgccat ttcggaatca tctcttcgta cggatcgcta ccgtctaccg gggtgataac
     1381 aagacgacgt ttacctttgg tttctttacc gaaggaaacg ataccgctga tttcagccag
     1441 gattgccggc tctttcggac gacgtgcttc gaacaggtcc gcaacgcgcg gcagaccacc
     1501 ggtgatgtcc ttggtaccgc cggattcctg cggaatacgc gccagggtgt caccagagct
     1561 gatctgtacg ccatcttcca gctgaacaat cgctttaccc ggcaggaagt actgcgcagg
     1621 catatcggta cccggaatca gaacgtcgtt accctgagca tcaacgattt tcagtgccgg
     1681 acgcagatct ttaccacctg cggtacgttc tgcggaatcc agaaccacca gcgaagacag
     1741 accggtcaat tcgtctgtct gacgagtaat ggtctgaccg tcgatcatgt cagtaaagcg
     1801 tacaaaaccg cttacttcgg tgataaccgg catggtgtgc gggtcccagt ttgcaacggt
     1861 ttcgccgcca gcaacctgtt cgccatcgcc tttcgccagt accgcaccgt aaggtacttt
     1921 gtagctttct ttggtacgac cgaattcgtc gatcagtttc agttcagtat tacgggaagt
     1981 gataaccagt ttaccgctgg agttcacaac cgacttcacg ttgctgagct tgatgctacc
     2041 tttgtttttc acctggatgc tggattcagc agccgcacga gatgccgcac caccgatgtg
     2101 gaacgtacgc atggtcagct gtgtacccgg ttcaccgatg gactgtgccg cgataacacc
     2161 gattgcttca cccttgttga tgatgtggcc acgcgccagg tcacgaccgt agcagtgcgc
     2221 acatacacca aagtcggtgt cacaagatac aacagaacgt actttaaccg cgtcgacaga
     2281 gttctcttcc agcaggtcac accactgttc gtgcagcagc gtgttgcgcg gaacgaggat
     2341 atcagcagta cccggcttca gaacgtcttc agcagttaca cgacccagta cgcgatcgcg
     2401 cagcggctct ttaacatcac caccttcgat aaccggagtc atcatgatac cttcatgggt
     2461 accacaatcg tcttcggtaa ccaccaggtc ctgcgccacg tcaaccagac gacgagtcag
     2521 gtaaccggag tttgcagttt tcagtgcggt atccgccaga cctttacgag caccgtgggt
     2581 ggagatgaag tactggagta cgttcagacc ttcacggaag ttcgcggtga ttggcgtttc
     2641 gatgatggag ccatccggct tcgccatcag accacgcata ccagcaagct gacgaatctg
     2701 tgccgcagaa ccacgcgcac cggagtcggc catcatgtag atgctgttga aggaaacctg
     2761 cttctcttcc tgaccgtcac ggttaatcac ggtttcagtt tgcaggttat ccatcatcgc
     2821 tttggataca cgatcgttcg ccgcagccca gatatcgata actttgttgt agcgttcgcc
     2881 cgcagttacc agaccagact ggaactgctc ctgaatttca gcaacttctg cttctgcctc
     2941 ggagatgatt tcgtgtttct tctccgggat gaccatgtca tcgatgccaa cagatgcacc
     3001 agaacgcgct gcataggcga agccggtgta catgatctgg tccgcaaaaa taacggtcgg
     3061 tttcagaccg agaatgcggt agcaggtgtt cagcattttg gagattgctt ttttacccag
     3121 cgcctggttg acgatggagt aaggcagacc tttcggtaca atcatccaca gaatggcacg
     3181 gccaacagtc gtgtctttca ggctggtttt cgctactaat tcaccgtttg catctttttc
     3241 atactcggtg atacgcactt taacgcgcgc atgcagagaa gccagaccag agcgatacag
     3301 acgttctgct tctttcgggc cagtcagcac catgccttcg cctttggcgt taacacagtc
     3361 acgggtcata tagtacagac ccagaacaac gtcctgagac ggaacgatga ttggttcgcc
     3421 gttcgccggg gacaggatgt tgttggtaga catcatcagc gcacgcgctt ccagctgggc
     3481 ttccagcgtc agcggtacgt gaacagccat ctggtcacca tcgaagtcgg cgttatatgc
     3541 cgcacaaacc agcgggtgca gctggatagc tttaccttcg atcagtaccg gttcaaatgc
     3601 ctggataccc agacggtgca gagtcggtgc acggttcagc agtaccgggt gttcgcggat
     3661 aacttcgtcc aggatatccc aaacgacagc ttcttcgcgc tcaaccattt tcttcgcagc
     3721 tttaatggtg gtagcaagac cacgcagttc cagcttgccg tagatgaacg gtttgaacag
     3781 ctccagcgcc attttcttcg gcagaccgca ctgatgcaga cgcaggtatg gacctacggt
     3841 gattacagaa cgaccggagt agtcaacacg cttaccgagc aggttctgac ggaaacgacc
     3901 ctgtttacct ttgatcatgt cggccaaaga tttcagagga cgcttgttag aaccggtgat
     3961 cgcacgaccg cgacgaccgt tatccagcag ggcgtctacc gcttcctgca gcatacgttt
     4021 ttcgttacgt acgatgatgt ccggcgcagc cagatccagc agacgtttca gacggttgtt
     4081 acggttaatg acgcgacgat acagatcgtt caggtcagaa gtcgcgaaac gaccaccatc
     4141 cagcggaacc agcggacgca gatctggcgg cagtaccggc agaacggtca ggatcatcca
     4201 ctctggtttg ttaccagact gaacgaacgc ttccagcagt ttgatacgct tggtcagctt
     4261 tttacgcttg gtttcggagt tggtttcgtt cagctcttca cgcagctgtt cgcactcttg
     4321 ctccagatcc atgctcttca gcagagcctg gattgcttcc gcacccatct tcgcgtcgaa
     4381 ttcgtcaccg aactcttcca gcgcgtccag atactgctct tcagtcagga tctgctgacg
     4441 ttccaggttg gtcataccgc cttcgataac cacataggat tcaaagtaca gtacgcgttc
     4501 gatatcgcgc agcggcatat cgagcagcag accgatacgg gacggcagcg atttcaggaa
     4561 ccagatatgc gcagtcgggg aagccagttc gatgtggccc atacgctcac ggcgtacttt
     4621 agtctgggtc acttcaacgc cgcacttctc acagatgacg ccacggtgtt tcaggcgctt
     4681 gtacttaccg cacaggcact cgtaatcttt taccggccca aagatacggg cgcagaaaag
     4741 gccgtcacgt tctggtttga acgtacggta gttgatggtt tccggctttt taacttcacc
     4801 gaaagaccat gaacggatca tgtctggcga agccagagca attttgatcg catcaaactc
     4861 ttcggtttta gtctgcgctt tcagaaactt taataaatct ttcacggatt tgctcccgtc
     4921 ggagttagca caatccgctg ccgggtttta acccgacagc agtgacctgt ttgagcgaga
     4981 attactcgtc ttccagttcg atgttgatac ccagcgaacg aatctctttc aacaatacgt
     5041 tgaaggattc tggcatgccc ggctccatct gatggttgcc gtccacgatg tttttataca
     5101 tcttggtacg accgttcacg tcatcagact taacggtgag catttcctgc agggtgtatg
     5161 ctgcgccgta tgcttccagc gcccacactt ccatctcccc gaaacgctga ccaccgaact
     5221 gtgccttacc acccagcggc tgctgagtaa ccaggctgta agaaccggtg gaacgcgcgt
     5281 gcatcttgtc gtcgaccagg tggttcagtt tcagcatgta catgtaacca acggttaccg
     5341 gacgctcgaa ctgttcacca gtgcgaccat cgtacaggcg gatctgaccg gaagtcggca
     5401 ggtcgccaag tttcagcagc tctttaattt ctgcttcttt cgcaccgtcg aacaccggcg
     5461 ttgcgattgg catacctttg cgcaggtttt cagccagacg cataacttct tcatcgctga
     5521 aggtactcag gtcaactttc tgacgaacgt cagcgcccag atcgtacgca cgctggatga
     5581 attcgcgcag tttcgcgact tcttgctgct gtttcagcat ggcgttgatc ttgtcgccga
     5641 tacctttcgc agccataccc aggtgggttt cgaggatctg accgatgttc atacgagacg
     5701 gtacgcccag cgggttcagt acgatgtcta ccggcgtacc gttttcatcg taaggcatat
     5761 cttcgatcgg gttgatctta gaaattacac ccttgttacc gtgacgacct gccatcttgt
     5821 caccaggctg gatacggcgt ttaaccgcca gatatacctt aacaatcttc agtacgcccg
     5881 gtgccagatc gtcgccctgg gtgattttgc ggcgtttcgc ttcgagtttc ttctcgaact
     5941 cgtgtttcag ttcgtcatac tgctcagcca gctgttccag ctgattttgt ttctcttcgt
     6001 ctgtcaggcc cagctccagc cagcgatcgc gcggcagttt gtcgagcttc tcagcttcaa
     6061 cgccaccggc taccagcaca gcacggatac ggctgaacag acccgcttcg aggatctgca
     6121 gttcttcaga caggtctttc ttcgcctgtt tgagctgcat ttcttcgatt tccagcgcac
     6181 gtttgtcttt ttctacgcca tcgcgagtaa agacctgaac gtcgataacc gtaccggata
     6241 caccgtttgg tacgcgcaga gaagagtctt taacgtcaga ggctttctca ccgaagatcg
     6301 cacgcagcag tttttcttct ggggtcagct gagtttcacc tttcggcgtt accttaccaa
     6361 ccagaatgtc gccaccggtc acttccgcac caatgtaaac gataccggat tcatctagtt
     6421 tggagagcgc agcttcaccc acgttcggga tgtcagcggt gatctcttcc ggccccagct
     6481 tggtgtcacg ggacacacac gccagttcct gaatgtggat ggtggtgaaa cggtcttcct
     6541 gaacaacacg ctcggatacg aggatggagt cttcgaagtt gtaaccattc cacggcatga
     6601 acgctacgcg catgttctga ccaagcgcca gttcaccgag gtcggtggac ggaccgtctg
     6661 ccagcacgtc gccacgttca accggttcac ccagagacac acacggcatc tggttgatac
     6721 aggtgttctg gttagaacgg gtgtatttgg tcaggttgta gatgtcgata cctgcttcac
     6781 ccggatacat ctcgtcttcg ttaactttga taacgatacg ggaagcatcc acgtactgaa
     6841 cgacaccacc acgtttagct accgcagtta caccggagtc aacggcaaca gcacgttcca
     6901 taccagtacc aaccagcggc ttatcagcgc gcagagtcgg aacggcctga cgttgcatgt
     6961 tcgcacccat caatgcacgg ttggcgtcat cgtgttccag gaacgggatc agggacgcac
     7021 cgacggatac cacctgctgg gtggatacgt ccatgtagtc aacctggtcg cggctgaaca
     7081 agctggattc gcctttgcta cggcaagtta ccagatcttc tacgaagtgg ccttcttcat
     7141 ccaggttgga gttcgcctgg gcgataacgt agttgccttc ttcgatagca gacaggtagt
     7201 gaatttcgtc agttacaaca ccgtcggtca ctttacgata cggagtctca aggaagccgt
     7261 attcgttagt ctgtgcgtac acggacagag agttgatcag accgatgttc ggaccttcag
     7321 gggtttcgat tggacatacg cgaccgtagt gagtcgggtg tacgtctcga acttcgaagc
     7381 ctgcacgttc acgggtcaga ccgcctgggc cgagtgcgga gatacgacgt ttgtgcgtaa
     7441 tctcagacag cgggttgttc tggtccataa actgagacag ctggctggaa ccgaagaact
     7501 ctttcactgc tgcggaaatc ggcttggcgt tgatcatatc ctgaggcatc agggtatcca
     7561 gatcgcccag agacagacgc tctttcaccg cacgctctac acgtaccagg ccaacgcgga
     7621 actggttttc cgccatttcg ccaacggaac ggatacgacg gttgccgagg tggtcgatat
     7681 catcgacttc gcctttaccg ttacggatat cgatgagctt tttcataaca tcaatgatgt
     7741 cgtctttgct caggataccg gaaccttcga tttcttcgcg cagcagagaa cggttgaact
     7801 tcatacgacc aaccgcagac aagtcataac ggtcttcgga gaagaacagg ttctcgaaca
     7861 ggctttcagc tgcttcacga gtcggcggct cgccagggcg catcatgcgg tagatttcta
     7921 ccagtgcgct cagacggtcg ttagttgggt cgacacgtaa ggtttcagag atatatgggc
     7981 cgtgatccag atcgttggtg aacagcgttt cgatacgctt gtgaccagac tggctcagct
     8041 tagccagcag atccaggctc agctccatgt tcgctgcgca gatcagctcg ccggtagact
     8101 catcaatata gtctttagca accactttac ctgcgatgta ctcaaccggg acttcgataa
     8161 gtttgacgtc gtctttttcc agctggcgaa tgtggcgcgc agtgatacgg cggccttttt
     8221 ctacgtacac tttaccgtta gcttcgatgt caaaagatgc ggtttcacca cgcaggcgtt
     8281 ccggcaccag ttccatctgc agcttgttat cacggatttc aaagataact ttttcaaaga
     8341 acaggtcgag gatctgctct gtggtgtagt tcagggcgcg cagaatgatg gtcgcaggca
     8401 gtttacggcg acggtcgata cgtacgaaca ggttgtcctt cggatcgaat tcgaagtcca
     8461 gccaggaacc acggtaaggg atgatgcgcg cgttatacag cactttaccc gaagagtggg
     8521 ttttaccttt gtcggagtca aagaagacgc ccggactacg gtgcagctgg gaaacgataa
     8581 cacgctcagt accgttgata acaaaggtac cgttgtctgt catgagcgga atttcgccca
     8641 tgtagacttc ttgttcttta atgtctttta cggtgccttc cggcgcttcg cgctcataga
     8701 tcaccagacg cagtttaacg cgcagcggtg cggaataggt cacgccacgg atttgacatt
     8761 cctggacgtc aaacaccggt tcgccaaggc ggtagctgac gtattgcagc tcggaattac
     8821 cgctgtagct ctgaatcggg aatacggaac ggaaagctgc ttccagacca tactgccctt
     8881 caggatcttg ctcgataaat ttctgaaacg agtcaagctg gatagaaagg agataaggta
     8941 catccagaac ttgtggacgt ttaccaaaat ccttacgaat acgttttttc tcggtatagg
     9001 agtaaaccat agggttcctc agctcgctga caagtcgacc catctgtcca ttgagcggac
     9061 agtttgtgca acactatttt gttgaccgga aaatggaaca ctttccgcaa tgcctgttgc
     9121 tatcacgctt aaaccatttc attgcgattt acacagaacg gacgtcctgt cgcagtatat
     9181 taagtcgtcg atagaaacaa gcattgaaag gcacagcagt agtcaaacag tgtgaaacgc
     9241 tactggcgcc ttacagcgca aaaaggctgg tgactaaaaa gtcaccagcc atcagcctga
     9301 tttctcaggc tgcaaccgga agggttggct tatttaactt caacttcagc gccagcttct
     9361 tccagagctt ttttcagtgc ttctgcgtcg tctttgctca cgccttcttt cagagcagcc
     9421 ggtgcagatt ctaccaggtc tttagcttct ttcagaccca ggccagttgc gccacgtact
     9481 gctttgataa cagcaacttt gttagcgcca gcagctttca gaattacgtc gaattcagtt
     9541 ttttcttcag cagcttcaac cgggccagca gctacagcta cagcagcagc agcggaaaca
     9601 ccgaattttt cttccattgc agagatcagt tctacaacgt ccattacaga catagctgca
     9661 actgcttcaa tgatttgatc tttagtgata gacatttaaa ttgttcctga atatcagaat
     9721 aagtttatac gtaagcgaat gcgttaaaaa gataactgcg attaagcagc ttctttcgca
     9781 tcgcgtacag cagccagagt acgaaccagt ttgccagccg aagcttcttt catggttgcc
     9841 atcaggcgtg caattgcttc ttcgtaggtc ggcagagttg ccaggcggtc gatctgagac
     9901 gccgggatca gctcaccttc aaaggcagcg gctttgacct caaattttgc attcgctttc
     9961 gcgaactctt tgaacagacg agcagcagcg cccgggtgtt ccatagagta tgcaatcagg
    10021 gtcggaccaa caaacgcgtc tttcaggcac tcgaacggag taccttcaac agcacggcgc
    10081 agcagggtgt tacgaacaac acgcatgtat acgccagctt cgcgacctgc tttacgcagt
    10141 tcagtcattt tatctacagt tacgccacgg gaatccgcaa ctactgcaga cagcgcgcct
    10201 ttggctactt cgctgacttc agcaacaatc gcttgtttgt cttgaagatt taaagccatt
    10261 agctttgctc ctggatgttt gccagagaaa atctctggaa ctcacttcac tcctccaaac
    10321 ggagagagcg tcttaattac ggtgagcaga aacaagccag aatataaaag aataatctta
    10381 gcgttctgtc accgtctacg caggggatta agtttcttgc gaaactcctg cggtcttcga
    10441 cggaggcctg gataggccag gctccaacga acaaatcttt tctatccgtc gctattcaac
    10501 ttgtggcggc gttggcttcc ttcattcgca ccagtcacat agttagctat gctcctggcg
    10561 actcactcag ttgccgcctt gccacaaccc gaatatctcg gatatacgtc tgcattaagc
    10621 attatacgtg ggggtaagat tgtagacaaa atcaccgccc acgtaaaggc attagtttac
    10681 agaagcgctc aggccagcct ggtcaactgc aacacctgca cccatggtgg tggagatgct
    10741 aactttcttg atgtacacgc ctttcgcctg agtcggtttt gcttttttca gcgcaaccag
    10801 cagagcttcc aggttttctt tcagtttgtc agcgtcaaag tccactttac cgatggtggt
    10861 gtggatgatg ccgtttttgt cgttacggta acgaacctgg ccagctttag cgtttttaac
    10921 cgcttcagca acgttcggtg ttacagtacc cactttcggg tttggcatca ggccgcgcgg
    10981 acccagaacc tggcccagct ggccaacaac gcgcattgca tccggagaag caataacaac
    11041 gtcaaagttc atttcgcctt tcttgatctg gtcagccaga tcttccatac ctaccagttc
    11101 tgcgcctgca gctttagcag cttcagcgtt tgcaccttgg gtaaatacgg ctacgcgaac
    11161 ggaacggcca gtaccgtgcg gcagtacagt tgcaccacgt acgttctggt cagatttacg
    11221 agcgtcgatg ccgaggttaa cagctacgtc cacgctttct acgaatttag cagtcgccag
    11281 ctctttcagc agtgcgatag cttcgttgat gtcgtactgt ttggttgcat caactttctc
    11341 gcggataaca cgcatgcgct tggtcagttt agccatttct tagtcctcca ctaccaggcc
    11401 catggaacgt gcagtacctt cgatggagcg agtcatcgct tcaatgtcgg caccagtcat
    11461 gtcggcagct ttggtctgcg cgatttcctg cagctgagcg cgggaaattt tacccacttt
    11521 gtctttgttc ggcttaccgg aaccagactt gataccagcc gcttttttca gcagaactgc
    11581 tgccggcggg gtcttggtaa cgaaagtgaa agaacggtca gcgtaaacgg tgattactac
    11641 cggaatcggc agaccttttt cgatggaatc agtttttgcg ttgaacgctt tgcagaattc
    11701 catgatgttt acgccctgct gacccagagc cggacctact ggcggactcg ggttagccat
    11761 accagctgca acctgcagct tgacataggc ttgtactttc ttagccatta taaattcctc
    11821 aagttgggta ataacgcctc tgagaggctc cccgtgatat aaaaaatcgt ttttacgggc
    11881 aaggcccata aaaacaaaag gcgcgaaatt gtattccaat ctcgcgcctt gtgcaacgat
    11941 taaatcgccg cttttttgat cgctgggtta ggctttttca acctggctga agtccagctc
    12001 taccggggtc gcacgaccga agatagaaac agacactttc agacgagatt tctcgtaatc
    12061 cacttcttca acaacaccgt tgaagtcagc gaacggacca tcattaacac ggaccatttc
    12121 acccggttca aacagcgttt tcggacgcgg cttatcacca acctgctgca ggcggttcat
    12181 aatcgcatcg acttctttat cgctgattgg cgcaggacga tcggaagtac cgccgatgaa
    12241 gcccatcact cgcggtacgc tgcgcaccag gtgccagctc gcgtcgttca tcaccatctg
    12301 aacgaggacg tagccaggga agaatttacg ttcgcttttg cgacgctgac cgccacggat
    12361 ttcaaccact tcttcggttg gtaccatgac ttcaccaaac aaatcttcca tgttgtgtaa
    12421 tttgatatgc tcacgcagcg acgttgctac gcggccttca aaaccggaaa acgcctgaac
    12481 gacgtaccag cgctttttag gagcttcaga catctcagaa cctcaggcca gtgataaagg
    12541 ataccaggcg aaccagaata ccatccagtc cccacaggat cagtgacatt actgcggtaa
    12601 ccgcagccac aatcagcgtg gtgtgcaatg tttcctggcg agtcggccaa atgaccttac
    12661 ggacttcggt acgcgcttca cgggcaaaag caacggtagc tttacctttt gtcgttaaca
    12721 gcgcgacacc acccgctgca gcaatcagaa ttactacggc cagcgcacgc agcggcagca
    12781 taatgtcgcg ataaaggtag ttgccgacaa tcgccaccaa gagcaatgcc accacaacga
    12841 cccacttcat cgcttccagg ccgcgcccgc ttccttgagc ttcggtattc gcactcataa
    12901 accaacctgt cagaagtttt ctacaaacat tttcaccccg cgatcgcgag gcaaaccaaa
    12961 tcgaaacgcg tattagcttt tcggattata cgccctcaac agagcctgtc tcagcaatga
    13021 ttatgacaaa gaaaatcact gatgagccag gttctggtac gaaagcgtgc aaaaagggca
    13081 tcaaatgatg cccttttagt gcgcattgcg tcaaatgtta tcggcaatta gctcagaact
    13141 tttgc
//
LOCUS       DADMHM010000113        13094 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.114, whole genome shotgun sequence.
ACCESSION   DADMHM010000113 DADMHM010000000
VERSION     DADMHM010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13094)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13094)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13094
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.114"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            6..1634
                     /locus_tag="JN125_002696"
     CDS             6..1634
                     /locus_tag="JN125_002696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001381416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flotillin family protein"
                     /protein_id="HAY8872431.1"
                     /translation="MFTAIIAVCILFIIGIIFARLYRRASAEQAFVRTGLGGQKVVMS
                     GGAIVMPIFHEIIPINMNTLKLEVSRSTIDSLITKDRMRVDVVVAFFVRVKPSVEGIA
                     TAAQTLGQRTLSPEDLRMLVEDKFVDALRATAAQMTMHELQDTRENFVQGVQNTVAED
                     LSKNGLELESVSLTNFNQTSKEHFNPNNAFDAEGLTKLIQETERRRRERNEVEQDVEV
                     AVREKNRDALSRKLEIEQQEAFMTLEQEQQVKTRTAEQNARIAAFEAERRREAEQTRI
                     LAERQIQETEIEREQAVRSRKVEAEREVRIKEIEQQQVTEIANQTKSIAIAAKSEQQS
                     QAEARANLALAEAVSAQQNVETTRQTAEADRAKQVALIAAAQDAETKAVELTVRAKAE
                     KEAAEMQAAAIVELAEATRKKGLAEAEAQRALNDAINVLSDEQTSLKFKLALLQALPA
                     VIEKSVEPMKSIDGIKIIQVDGLNRGSAAGDANTGNVGGGNLAEQALSAALSYRTQAP
                     LIDSLLNEIGVSGGSLAALTSPLTSTTPVAENVE"
     gene            1873..1932
                     /locus_tag="JN125_002697"
     CDS             1873..1932
                     /locus_tag="JN125_002697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Ibs family toxin"
                     /protein_id="HAY8872432.1"
                     /translation="MMKLVIILIVLLLVSFAAY"
     gene            2249..2308
                     /gene="ibsE"
                     /locus_tag="JN125_002698"
     CDS             2249..2308
                     /gene="ibsE"
                     /locus_tag="JN125_002698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin IbsE"
                     /protein_id="HAY8872433.1"
                     /translation="MMKFVIILVVLLLLSFPTY"
     gene            complement(2428..3861)
                     /gene="hldE"
                     /locus_tag="JN125_002699"
     CDS             complement(2428..3861)
                     /gene="hldE"
                     /locus_tag="JN125_002699"
                     /EC_number="2.7.1.167"
                     /EC_number="2.7.7.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase/D-glycero-beta-D-manno-heptose 1-phosphate
                     adenylyltransferase HldE"
                     /protein_id="HAY8872434.1"
                     /translation="MKVTLSEFERAGVMVVGDVMLDRYWYGPTSRISPEAPVPVVKVN
                     TIEERPGGAANVAMNIASLGANARLVGLTGIDDAARALSKSLADVNVKCDFVSVPTHP
                     TITKLRVLSRNQQLIRLDFEEGFEGVDPQPLHERINQALSSIGALVLSDYAKGALASV
                     QQMIQLARKAGVPVLIDPKGTDFERYRGATLLTPNLSEFEAVVGKCKTEEEIVERGMK
                     LIADYELSALLVTRSEQGMSLLQPGKAPLHMPTQAQEVYDVTGAGDTVIGVLAATLAA
                     GNSLEEACFFANAAAGVVVGKLGTSTVSPIELENAVRGRADTGFGVMTEEELKLAVAA
                     ARKRGEKVVMTNGVFDILHAGHVSYLANARKLGDRLIVAVNSDASTKRLKGDSRPVNP
                     LEQRMIVLGALEAVDWVVSFEEDTPQRLIAGILPDLLVKGGDYKPEEIAGSKEVWANG
                     GEVLVLNFEDGCSTTNIIKKIQQDKKG"
     gene            complement(3909..6749)
                     /gene="glnE"
                     /locus_tag="JN125_002700"
     CDS             complement(3909..6749)
                     /gene="glnE"
                     /locus_tag="JN125_002700"
                     /EC_number="2.7.7.42"
                     /EC_number="2.7.7.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional [glutamate--ammonia
                     ligase]-adenylyl-L-tyrosine
                     phosphorylase/[glutamate--ammonia-ligase]
                     adenylyltransferase"
                     /protein_id="HAY8872435.1"
                     /translation="MKPLSSPLQQYWQTVVERLPEPLAEKSLSTQAKSVLTFSDFVQD
                     SVIAHPEWLTELESQSPQADEWQHYAAWLQEALSNVSDEAGLMRELRLFRRRIMVRIA
                     WAQTLALVTEESILQQLSHLAETLIVAARDWLYDACCREWGTPCNAQGEAQPLLILGM
                     GKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRLIKVLDQPTQDGF
                     VYRVDMRLRPFGESGPLVLSFAALEDYYQEQGRDWERYAMVKARIMGDSEGVYANELR
                     AMLRPFVFRRYIDFSVIQSLRNMKGMIAREVRRRGLTDNIKLGAGGIREIEFIVQVFQ
                     LIRGGREPSLQSRSLLPTLSVIAALHLLSENDAEQLRVAYLFLRRLENLLQSINDEQT
                     QTLPSDELNRARLAWAMDFADWPQLTGALTAHMTNVRRVFNELIGDDESETQEESLSE
                     QWRELWQDALQEDDTTPVLAHLSEDDRKQVLTLIADFRKELDKRTIGPRGRQVLDHLM
                     PHLLSDVCAREDAAVTLSRITALLVGIVTRTTYLELLSEFPAALKHLISLCAASPMIA
                     SQLARYPLLLDELLDPNTLYQPTATDAYRDELRQYLLRVPEDDEEQQLEALRQFKQAQ
                     LLRIAAADIAGTLPVMKVSDHLTWLAEAMIDAVVQQAWVQMVARYGKPNHLNDREGRG
                     FAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGEREIDGRQFYLRLAQRIMHLFN
                     TRTSSGILYEVDARLRPSGAAGMLVTSAEAFADYQKNEAWTWEHQALVRARVVYGDPQ
                     LTAHFDAVRREIMTLPREGKTLQTEVREMREKMRAHLGNKHRNRFDIKADEGGITDIE
                     FITQYLVLRYAHEKPKLTRWSDNVRILELLAQNDIMEEQEAMALTRAYTTLRDELHHL
                     ALQELPGHVSEDCFTAERDLVRASWQKWLVEE"
     gene            complement(6772..8073)
                     /locus_tag="JN125_002701"
     CDS             complement(6772..8073)
                     /locus_tag="JN125_002701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic triphosphatase"
                     /protein_id="HAY8872436.1"
                     /translation="MAQEIELKFIVNHSAVEALRDHLNTLGGEHHDPVQLLNIYYETP
                     DNWLRGHDMGLRIRGENGRYEMTMKVAGRVTGGLHQRPEYNVALSEPTLDLAQLPTEV
                     WPNGELPADLASRVQPLFSTDFYREKWLVAVDDSRIEIALDQGEVKAGEFAEPICELE
                     LELLSGDTRAVLKLANQLVSQTGLRQGSLSKAARGYHLAQGNPAREIKPTTILHVAAK
                     ADVEQGLEAALELALAQWQYHEELWVRGNDAAKEQVLAAIGLVRHTLMLFGGIVPRKA
                     STHLRDLLTQCEATIASAVSAVTAVYSTKTAMAKLALTEWLVSKAWQPFLDAKAQSKM
                     SDSFKRFADIHLSRHAAELKSVFCQPLGDRYRDQLPRLTRDIDSILLLAGYYDPVVAQ
                     AWLENWQGLRHAIATGQRIEIEHFRNEANNQEPFWLHSGKR"
     gene            8315..8935
                     /locus_tag="JN125_002702"
                     /pseudo
     CDS             8315..8935
                     /locus_tag="JN125_002702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311965.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
     gene            8999..10237
                     /gene="cca"
                     /locus_tag="JN125_002703"
     CDS             8999..10237
                     /gene="cca"
                     /locus_tag="JN125_002703"
                     /EC_number="2.7.7.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused tRNA nucleotidyltransferase/2',3'-cyclic
                     phosphodiesterase/2' nucleotidase/phosphatase Cca"
                     /protein_id="HAY8872437.1"
                     /translation="MKIYLVGGAVRDALLGLPVKDRDWVVVGSTPQEMLDAGYQQVGR
                     DFPVFLHPQTHEEYALARTERKSGSGYTGFTCYAAPDVTLEDDLKRRDLTINALAQDD
                     NGEIIDPYNGLGDLQNRLLRHVSPAFGEDPLRVLRVARFAARYAHLGFRIADETLTLM
                     REMTHAGELEHLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPA
                     PARWHPEIDTGIHTLMTLSMAAMLSPQVDVRFATLCHDLGKGLTPPELWPRHHGHGPA
                     GVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIHTFPMLNPKTIVKLFDSIDAWRKPQR
                     VEQLALTSEADVRGRTGFESADYPQGRWLREAWEVAQSVPTKAVVEAGFKGVEIREEL
                     TRRRIAAVASWKEQRCPKPD"
     gene            complement(10394..11215)
                     /gene="bacA"
                     /locus_tag="JN125_002704"
     CDS             complement(10394..11215)
                     /gene="bacA"
                     /locus_tag="JN125_002704"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708867.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HAY8872438.1"
                     /translation="MSDMHSLLIAAILGVVEGLTEFLPVSSTGHMIIVGHLLGFEGDT
                     AKTFEVVIQLGSILAVVVMFWRRLFGLIGIHFGRPLQHEGESKGRLTLIHILLGMIPA
                     VVLGLLFHDTIKSLFNPINVMYALVVGGLLLIAAECLKPKEPRAPGLDDMTYRQAFMI
                     GCFQCLALWPGFSRSGATISGGMLMGVSRYAASEFSFLLAVPMMMGATALDLYKSWGF
                     LTTGDIPMFAVGFITAFVVALIAIKTFLQLIKRISFIPFAIYRFIVAAAVYVVFF"
     gene            complement(11306..11674)
                     /gene="folB"
                     /locus_tag="JN125_002705"
     CDS             complement(11306..11674)
                     /gene="folB"
                     /locus_tag="JN125_002705"
                     /EC_number="4.1.2.25"
                     /EC_number="5.1.99.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708868.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional dihydroneopterin
                     aldolase/7,8-dihydroneopterin epimerase"
                     /protein_id="HAY8872439.1"
                     /translation="MDIVFIEQLSVITTIGVYDWEQTIEQKLVFDIEMAWDNRKAAKS
                     DDVADCLSYADIAETVVSHVEGARFALVERVAEEVAELLLARFNSPWVRIKLSKPGAV
                     ARAANVGVIIERGNNLKENN"
     gene            11779..12396
                     /gene="plsY"
                     /locus_tag="JN125_002706"
     CDS             11779..12396
                     /gene="plsY"
                     /locus_tag="JN125_002706"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HAY8872440.1"
                     /translation="MSAIAPGMILIAYLCGSISSAILVCRLCGLPDPRTSGSGNPGAT
                     NVLRIGGKGAAVAVLIFDVLKGMLPVWGAYELGVSPFWLGLIAIAACLGHIWPVFFGF
                     KGGKGVATAFGAIAPIGWDLTGVMAGTWLLTVLLSGYSSLGAIVSALIAPFYVWWFKP
                     QFTFPVSMLSCLILLRHHDNIQRLWRRQETKIWTKFKRKREKDPE"
     gene            complement(12409..>13094)
                     /gene="ttdR"
                     /locus_tag="JN125_002707"
                     /gene_synonym="dan"
     CDS             complement(12409..>13094)
                     /gene="ttdR"
                     /locus_tag="JN125_002707"
                     /gene_synonym="dan"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-binding transcriptional activator TtdR"
                     /protein_id="HAY8872441.1"
                     /translation="VDDVTQIKTRPEGMIRIGCSFGFGRSHIAPAITELMRNYPELQV
                     HFELFDRQIDLVQDNIDLDIRINDEIPDYYIAHLLTKNKRILCAAPEYLQKYPQPQSL
                     QELSRHDCLVTKERDMTHGIWELGNGQEKKSVKVSGHLSSNSGEIVLQWALEGKGIML
                     RSEWDVLPFLESGKLVQVLPEYAQSANIWAVYREPLYRSMKLRVCVEFLAAWCQQRLG
                     KPDEGYQVM"
BASE COUNT         3160 a         3678 c         3282 g         2974 t
ORIGIN      
        1 cctggatgtt taccgcgatt attgccgtat gcattctgtt tattattgga attattttcg
       61 ccaggctcta tcgtcgcgct tcggcagagc aagcttttgt tcgtactggt ttaggtgggc
      121 aaaaagtggt gatgagcggt ggcgcaatcg tgatgccgat ctttcatgaa ataatcccca
      181 tcaatatgaa tactctgaag ctggaagtca gccgctcaac cattgatagc ctgattacga
      241 aagatcgtat gcgtgtcgat gtagtagtcg ctttctttgt acgggtaaaa ccgtctgtag
      301 aaggcatcgc cactgcggcg cagacgttgg ggcaacgcac gctatcacca gaagacttac
      361 gtatgttggt tgaagataaa tttgtcgatg ccctccgtgc aacagctgca caaatgacca
      421 tgcatgagtt acaggatacc cgcgagaact tcgtgcaggg agtacaaaat actgtcgcag
      481 aagacctgtc gaaaaacggt cttgagctgg aaagcgtttc acttaccaac tttaaccaga
      541 cctcgaaaga acatttcaat ccgaacaatg cctttgacgc cgaaggttta accaaactga
      601 ttcaggagac ggagcgccgt cgtcgcgaac gtaacgaagt tgaacaggat gtagaagttg
      661 cggtgcgtga gaaaaaccgt gatgcacttt cgcgcaagtt ggagattgaa caacaagaag
      721 cgtttatgac gcttgagcag gagcagcagg ttaaaacccg tactgccgaa cagaatgcac
      781 gtattgcggc ttttgaagct gaacgtcgtc gtgaagcaga gcagacgcga attctggctg
      841 aacgacaaat tcaggaaacg gagatcgagc gcgagcaggc cgtccgctca agaaaggttg
      901 aggctgaacg tgaagttcgt attaaagaga tcgaacagca gcaggtcacc gaaatcgcca
      961 accagacgaa atcgatcgct attgccgcca aatcggaaca acagtcccag gcagaagcgc
     1021 gtgctaacct tgcactcgca gaagcagtaa gtgcgcaaca aaacgtagaa accactcgcc
     1081 agaccgcaga agccgatcgt gctaaacaag ttgccctaat cgctgccgcg caggatgcag
     1141 aaaccaaagc ggttgaactg accgtgcggg cgaaagcaga aaaagaagcc gcagagatgc
     1201 aggcggcggc tatcgttgag ttagccgaag ctacacgtaa aaagggtctg gcggaagcag
     1261 aagcacaacg tgcgctgaac gatgctatca acgtactttc tgatgaacaa accagcctta
     1321 aattcaaact ggccttgttg caggcgctac ctgcggtaat agaaaaatcc gttgagccga
     1381 tgaaatctat tgacggtatc aagattattc aggtcgatgg tctgaatcgt ggcagcgctg
     1441 cgggtgatgc aaacacgggt aatgtggggg gcggaaacct ggcggaacaa gcattatcag
     1501 ccgctctctc ttaccgcaca caggcaccgc tgattgactc cttgctcaat gaaattggcg
     1561 tttcaggcgg ctcactggcg gcattgactt cacccttaac ctcaacaact cccgtcgccg
     1621 aaaacgtaga ataaattttc agctatgaac gtccctggca caaaaagccg gggatttttt
     1681 atatctgcgt tccgctaaaa actgcaaatg atcaggtcgt tgcaacgttt tgcgtgaccg
     1741 ctcggggaag gcaaaactgc ctctgggaaa gcgttgcgcg aggtccggcg ctcatcaaca
     1801 atcggggagt cagcaaaggg ctgaaacggg aaagcccctc ccgaggaagg ggccttacag
     1861 aaggaaaggg ttatgatgaa gctcgtcatc atactgattg tgttgttact cgtaagtttc
     1921 gcagcttatt aacagccaat cagagggggg agaaatcctc cctcaccctt gttcctttac
     1981 tttaggttga aaaaaaatca gcgtcaagaa ggtttcatta acacatatcc ctggcccaaa
     2041 aagccgggga ttttttatat ctgcgttccg ctaaaaggtg caaatgctca ggacgttgca
     2101 gcgttttgcg tgaccgctcg gggaaggcaa aactgcttca gggaaagcgt tgcgcggggt
     2161 ccggcgctca tcaacaatcg gggagtcagc aaggggctga aacgggaaag cccctcccga
     2221 ggaaggggcc ttatagaagg aaagggttat gatgaagttc gtcatcatac tggttgtgtt
     2281 gttactgtta agtttcccga cttactaaca actgatcaga ggggggagaa atcctccctt
     2341 acccttgttc ctttacttta ggttgaaaaa acaacagcgt caataggcct gcctgctacg
     2401 aagcgagatc tgtgaaccgc tttccggtta gcctttttta tcctgttgga tcttcttgat
     2461 gatgttagtg gtcgagcaac cgtcttcgaa gttgagcacc agcacttcgc cgccgttggc
     2521 ccagacttct ttactcccgg cgatctcttc tggtttatag tcgccgccct tcaccagtaa
     2581 atctggcagg atcccggcga tcaagcgctg cggcgtgtct tcttcaaacg acaccaccca
     2641 gtcgaccgct tccagtgcgc ccagcacaat catacgctgt tcgagcgggt taacggggcg
     2701 ggaatcccct ttcagccgtt tggtggaggc atcgctgttc acagcgacaa tcagacggtc
     2761 acccagtttg cgagcatttg ccagatagga gacgtgcccg gcgtgcagga tgtcaaagac
     2821 accgttggtc attaccacct tttcgccgcg tttacgcgct gccgctacgg ccagcttcag
     2881 ttcctcttcg gtcatcacgc caaagccggt atctgcgcgc ccacgcactg cattttccag
     2941 ctcgatcggc gaaaccgtgg aggttcccag tttgccgacc accacgccag ccgccgcatt
     3001 ggcaaagaag caggcttctt ccagcgaatt acccgctgcc agcgttgccg ccaggacgcc
     3061 aatcaccgtg tcgcccgcac cggtaacgtc atacacttcc tgcgcctggg ttggcatatg
     3121 cagcggcgct ttacccggtt gcagcagcga cataccctgt tcggaacggg tcactaacag
     3181 agccgagagt tcgtaatcgg caatcagttt catgccgcgc tcaacaatct cttcttcggt
     3241 cttacattta ccgacaacag cttcaaattc cgagagattc ggcgttaaca gcgtagcgcc
     3301 gcggtagcgc tcaaaatcgg taccttttgg atcaatcagc accggaacgc ccgctttacg
     3361 cgccagttgg atcatctgct gtacgcttgc cagcgcacct ttggcgtagt cagaaagcac
     3421 cagcgcgcca atcgaactca gcgcctgatt aatccgctcg tgcagcggct gcggatcaac
     3481 gccttcgaaa ccttcttcga aatccagacg gatcagctgt tggttgcggg aaagtacccg
     3541 taatttggtg atggtcggat gcgtcggtac agaaacgaag tcgcatttga cgttgacgtc
     3601 ggccagagat ttactcagcg cgcgcgctgc atcgtcaatg cccgtcaacc cgaccaggcg
     3661 tgcattagca ccgagagaag cgatattcat cgccacgtta gccgcgccgc ccggacgttc
     3721 ttcgatggta ttcactttaa ccacgggcac cggcgcttcc ggcgagatac ggctggtggg
     3781 accgtaccag taacgatcca gcattacatc accaaccacc atcactcctg cacgttcaaa
     3841 ctctgacagc gttactttca ttcctgtctc ctgagagatt caaaatttgc gcgcgataat
     3901 accatacttc attcttccac cagccacttc tgccagcttg cccgcaccag atcacgctct
     3961 gcggtgaagc aatcctccga cacatggccc ggcaattcct gtaatgccag atgatgaagt
     4021 tcatcgcgca gcgtcgtgta agcacgggtc agcgccatcg cttcctgctc ttccataatg
     4081 tcgttttgcg ccagcagctc cagaatacgc acgttgtctg accagcgcgt taacttcggt
     4141 ttttcatgag cgtagcgcaa caccagatat tgggtaataa attcgatatc ggtaattccg
     4201 ccttcatcgg ctttgatatc aaagcgatta cgatgtttat tgccgagatg agcgcgcatt
     4261 ttctcgcgca tttcccgcac ttccgtttgc agagttttac cttcacgcgg cagcgtcata
     4321 atctcgcgac gcactgcgtc aaagtgcgcg gtgagctgcg gatcgccgta cactacacgc
     4381 gcacgcacca gcgcctgatg ctcccacgtc caggcctcgt ttttctgata atcagcaaat
     4441 gcttctgcgg atgtcaccag cattcccgcc gccccggacg gacgcagtcg tgcatccact
     4501 tcatacaaaa tgccggaaga ggttcgcgta ttgaacagat gcataatgcg ttgcgccaga
     4561 cgcagataaa actgtcgccc gtcgatttcc cgctcgccgt cagtcatcgc atccattggg
     4621 caatcatgga ggaagatcag gtcaagatcg gaactgtagc ctaactccca gccgcccagc
     4681 ttgccgtagc cgaccaccgc aaaaccacgg ccttcgcgat cgttgaggtg atttggctta
     4741 ccgtagcggg ccaccatttg aacccacgcc tgctgaacga cggcatctat catagcctct
     4801 gccagccagg ttaagtgatc gctcactttc atcaccggta gcgtaccagc gatatccgct
     4861 gcggcgatgc gtaacagctg cgcctgtttg aactgacgca gcgcctcaag ctgttgctct
     4921 tcgtcatctt ccggcacgcg cagcaaatac tggcgcaact catcgcggta ggcatcggtc
     4981 gccgtcggct ggtaaagagt gtttggatcg agcaattcat ccagcaataa tggataacgc
     5041 gccagctggc tggcaatcat cggcgatgcg gcacacagag aaatcaaatg tttaagcgcc
     5101 gcagggaatt cactgagcaa ttctaaatag gtggtgcggg taacaatccc caccagcaag
     5161 gcggtaatgc gcgacagcgt aacggcagcg tcttcacgcg cacagacatc acttagcaga
     5221 tgtggcatca gatggtcgag cacctgacgt cctcgcggcc cgatagtacg cttatccagc
     5281 tctttgcgga aatcagcaat cagcgttagg acctgtttgc gatcatcctc gctaagatgc
     5341 gctagcactg gcgtagtgtc atcttcctgc aacgcatcct gccacagctc acgccactgt
     5401 tccgacagcg actcttcctg agtttcactt tcgtcgtcgc caatcaattc attaaacacc
     5461 cggcgcacat tggtcatatg tgcggtcagc gccccggtca gttgcggcca gtcagcaaag
     5521 tccatcgccc acgccagccg cgcacggtta agctcatcag aaggaagcgt ttgggtttgt
     5581 tcgtcgttaa tgctttgcag caggttttcc agacgccgca ggaacagata tgccactcgc
     5641 aattgttcag catcgttttc agaaagcaga tgcagcgcgg caatgacgct gagcgttggc
     5701 agtaaagagc gcgactgcag cgacggttcg cgcccaccgc gaatgagctg gaacacctga
     5761 acgataaatt caatttcgcg aatgccgcct gcgccgagtt tgatattgtc ggtcaaacca
     5821 cgtcgacgca cttcacgggc aatcatccct ttcatgttgc gcagcgactg aatcacgctg
     5881 aaatcgatgt aacgacggaa aacaaacggg cgcagcatcg cacgcaactc gttagcatag
     5941 acgccttcgc tatcgcccat aatccgcgcc ttgaccatcg cgtaacgctc ccagtcgcgc
     6001 ccctgctcct ggtaataatc ctccaacgcg gcaaagctca gcaccagcgg gccactttcg
     6061 ccaaacggac gcagccgcat atccacgcga tagacgaagc catcctgcgt tggttgatcc
     6121 aacactttaa tcagccgctg ccccatgcgg gtaaaaaact gcgcgttatc cagttcccgg
     6181 cgtccgccct gcgtacaacc atgttccggc caggcaaaaa tcagatcgat atctgaggag
     6241 aaattcagtt ccccaccgcc cagcttaccc atgcctaaaa tcagcagcgg ttgcgcttcg
     6301 ccctgcgcat tgcacggcgt tccccactcg cggcagcaag cgtcatacag ccagtcacgc
     6361 gcggcgacaa tcagcgtctc cgccagatgg ctgagctgct gcaatatgct ctcttcagta
     6421 accaaagcca gcgtttgcgc ccaggcgatg cgcaccataa tgcgccgccg gaatagccgc
     6481 agctcgcgca ttaacccggc ttcgtcactc acattgctga gcgcctcctg caaccatgcc
     6541 gcgtaatgct gccattcatc agcctgcggc gattggcttt ccagttccgt cagccactct
     6601 ggatgcgcaa tcacgctgtc ctgcacaaaa tcactgaaag taagtactga cttcgcctgt
     6661 gtgctaagtg atttctcggc taaaggctct ggcagccgct caacaaccgt ctgccagtac
     6721 tgctgtaacg gtgaagagag cggcttcata agcgatttta tccttgcctg attaacgttt
     6781 tccgctgtgc aaccagaacg gttcctgatt gtttgcctca ttacggaaat gttcaatttc
     6841 aatgcgttgc ccggtcgcaa tagcgtgacg cagcccctgc cagttctcca gccaggcttg
     6901 cgcgacgaca ggatcatagt aacccgccag caacagtatt gagtcaatat cacgcgtcag
     6961 acgtggcaac tggtcacggt agcgatcgcc caacggctgg cagaaaacgc ttttcagttc
     7021 agcggcatgg cgggaaagat ggatatcggc aaagcgtttg aaggaatcgc tcattttact
     7081 ctgcgctttg gcatctaaaa acggctgcca ggctttgctt accagccatt cggtcaacgc
     7141 cagcttcgcc attgccgttt tggtagagta gaccgccgtc acggcagaaa ccgcagaagc
     7201 gatggtcgct tcgcattgag tcagcaaatc acgtaagtga gtgctcgctt tgcgcggcac
     7261 aataccaccg aacagcatca gtgtatgacg gaccagacca atggctgcca gcacctgttc
     7321 tttcgccgca tcgttgccgc gtacccacag ttcttcatga tactgccatt gcgctaacgc
     7381 cagctcgagc gccgcttcca gcccctgttc cacatcggct tttgccgcaa catgcaaaat
     7441 ggtggtcggt ttgatttcac gcgccggatt gccctgcgcc agatgatagc cacgcgccgc
     7501 tttgctcagg ctgccctggc gtaatccggt ttgcgatacc agttggttcg ccagtttcag
     7561 caccgcgcgc gtgtcgccgc taagcagttc cagttccagc tcacagatag gttcagcaaa
     7621 ttcccccgct ttcacctccc cctgatcgag agcgatttca attcggctgt catcgaccgc
     7681 caccagccat ttttcgcgat aaaaatcggt gctgaacagc ggttgtacgc gggaagcgag
     7741 atcggcgggc aattcgccgt tcggccagac ttccgtcggt aactgcgcca ggtcgagcgt
     7801 cggttcgctc aacgccacgt tatattccgg gcgctggtgt aagccgcctg tcactcttcc
     7861 tgcaactttc atggtcatct catagcgacc gttttcgcca cgaatacgta agcccatatc
     7921 gtgcccacgc agccagttat ccggcgtttc gtagtaaata ttcagcaact gcacggggtc
     7981 atggtgctcg ccgcccagcg tattgagatg gtcacgcaac gcctcaacgg cactgtgatt
     8041 aacaataaac tttaattcga tttcctgagc catggccttt acttatcggt tatgtcacat
     8101 aagtgacgat gaacggcgaa cttaatgcga tcttttttgt cagtagatag tattttgcgt
     8161 caaattgcca tgcaacgggc aatttgacgg gcgtaaaagt ttgaagcagt ggcaagacct
     8221 gacacagagg attccgattg atgtcgaatg ctttgcgtag cgacactgat gccactacta
     8281 tcgttccact ttccatgaca ataacgacag cctgatgcca aaattacgcc tgatcggatt
     8341 aactttactc gcacttagcg ccactgccgt ctcacacgct gaagaaacgc gctatgtttc
     8401 tgatgaactg aatacctggg tccgtagcgg tccgggagat cattatcgcc tcgtgggcac
     8461 ggttaacgcc ggcgaggaag tgaccttatt acaaactgac gccaacacca attatgccca
     8521 ggtgaaagac agctctggcc gtaccgcctg gatcccgttg aaacaactta gcactgagcc
     8581 aagcctgcgc tcccgtgtgc cagatctgga aaatcaggtc aaaaccctga ccgataaact
     8641 caccaatatc gataacacct ggaatcagcg caccgcagaa atgcagtaaa aagtggcgca
     8701 gagcgacagc gtgatcaacg gattaaaaga agaaaatcag aaattgaaaa acgagctgat
     8761 tgtcgcgcag aaaaaggtcg atgccgccag cgtacagctg gatgacaaac agcgcaccat
     8821 catcatgcaa tggtttatgt atggcggtgg cgtgctgggg cttggcttgc tgctcggtct
     8881 ggtactgcca cacctgatcc caacgcgcaa acgcaaagat cgctggatga actaaatcgc
     8941 cttcttcgtt gcactgtctt attattagga attgtgtatt tgacgaaggg atgatggcgt
     9001 gaagatttat ctggtcggtg gtgctgttcg ggatgcattg ttagggctac cggtcaaaga
     9061 cagagattgg gtggtggtcg gcagtacgcc acaggagatg ctcgacgcgg gctaccagca
     9121 ggtaggccgc gattttcctg tgtttctgca tccgcaaacg catgaagagt atgcgctggc
     9181 acgtaccgaa cggaaatccg gttccggtta caccggtttt acttgctatg ccgcaccgga
     9241 tgtcacgctg gaagatgatc ttaagcgtcg cgatctgacc attaatgcgc tggcccagga
     9301 cgataacggc gagattatcg acccgtacaa cggtctgggc gatctgcaaa atcgtctgtt
     9361 gcgccatgtt tcccccgctt ttggcgaaga tccgttacgc gttctgcgcg tggcgcgttt
     9421 tgctgcgcgt tatgcccacc tcggttttcg tattgccgat gaaactctga cgctgatgcg
     9481 cgagatgacc catgcgggtg aactggaaca cctgacgcct gaacgggtat ggaaagagac
     9541 ggaaagcgcc ctcaccaccc gcaatcccca agtgttcttc caggtactgc gcgattgcgg
     9601 tgcacttcgc gttttattcc cggaaattga cgccctgttt ggcgttccgg cccctgccag
     9661 gtggcatccg gaaatcgaca ccggtattca taccttaatg acgctctcaa tggcggcgat
     9721 gctgagtccg caggttgatg tccgtttcgc aactttatgc cacgatctcg gtaaaggact
     9781 gacgccgcca gaactttggc cgcgtcatca tgggcatggc ccggcgggtg ttaagttagt
     9841 ggaacaacta tgccagcgtc tgcgcgtgcc aaatgaaatt cgcgatttag ccagactggt
     9901 ggctgagttt cacgatctca tccacacctt cccaatgctg aacccaaaaa ccatcgtcaa
     9961 attatttgat tccatcgatg cctggcgtaa accgcagcgt gtcgagcaac tggcgctgac
    10021 cagcgaggct gacgtacgcg gcagaaccgg ttttgaatca gcggactacc cgcaaggccg
    10081 ttggttgcgc gaagcctggg aagtggcgca gtcagtgccg acaaaagcgg tcgttgaagc
    10141 gggatttaaa ggtgtggaga ttcgcgagga gctgacccga cggcggattg cggcggtagc
    10201 cagttggaag gaacaacgtt gcccaaagcc tgactgagta taaaactaaa cgttaacacg
    10261 aaccatcccc tcgccccttc ggggagaggg tgaggggaac agaccagcac cggtgcgaac
    10321 aatcaccccc accccggccc tctccctaca gagcgaggga gaaaaccagg cctgctcccg
    10381 aaccttttct caatcaaaag aacacgacgt acaccgcagc cgccacaata aagcgataaa
    10441 tggcgaacgg gataaacgaa atgcgcttaa tcaattgcag gaaggtttta atcgctatca
    10501 gtgccaccac aaaagcggtg ataaacccaa cggcaaacat cgggatatcg ccggttgtca
    10561 ggaagcccca gcttttgtag agatcaagcg ccgttgcgcc catcatcatc ggtaccgcca
    10621 gcaggaacga gaactcggaa gcagcgtaac ggctcacgcc catcagcatc ccacctgaaa
    10681 tggtggcccc ggaacgggag aaacccggcc acagcgccag acactggaaa cagccaatca
    10741 taaacgcctg acgataggtc atatcatcaa gacccggcgc acgcggctct ttcggcttca
    10801 ggcattcggc ggcaatcagc aacaaaccgc caacgaccag tgcatacatc acatttatcg
    10861 ggttaaacaa tgatttaatc gtgtcgtgga acaacagccc cagtaccacc gccggaatca
    10921 tccccagcaa aatgtggatc agcgttaaac gacctttgct ttctccttcg tgctgcaacg
    10981 ggcggccaaa gtggatgcca atcaggccaa acagacgccg ccagaacatc actactaccg
    11041 ccagaattga tcctaactgg atcacaactt caaaggtttt cgccgtgtcg ccctcgaacc
    11101 ccaacaagtg accgacaata atcatatggc ccgtgctgga taccggcaga aattctgtca
    11161 atccttcgac cacacccaat attgccgcta tcagcagcga gtgcatatcg ctcatcaata
    11221 aacccctaaa ttattaaaat gtaccgcttg tccggactac tgcagtaaga ccaggttata
    11281 accgtttggt ttaacagctg taaaattaat tattttcttt cagattattg ccacgctcaa
    11341 tgattacacc aacattcgcc gcccgcgcca ctgcgcctgg cttgctgagt ttgatgcgca
    11401 cccacggcga gttgaagcgt gctaacagca gctccgccac ctcttcagcc acgcgttcca
    11461 ccagcgcaaa acgcgccccc tcgacgtggc tgaccaccgt ttctgcaatg tcagcgtaac
    11521 tgaggcaatc cgccacatca tcacttttcg ccgctttacg gttatcccat gccatttcga
    11581 tatcgaacac taacttctgt tcgatggtct gttcccagtc gtaaacacca atagtggtga
    11641 ttaccgaaag ttgctctata aatacaatat ccatcacgtc ctgcctgctt tttggctaac
    11701 cggataccac ttccggcgaa atgtgcgtat tatccacaga ttcatcgttg aacacgaatt
    11761 ttcaaaacgg aacagcttat gagtgcaatc gcgcctggaa tgatcctcat cgcgtacctc
    11821 tgcggctcca tttccagtgc cattctggtt tgccgcttgt gtgggctgcc cgatccgcga
    11881 accagcggct ccggcaatcc aggcgcaacc aatgtgttac gtatcggtgg caagggagca
    11941 gccgtagcag tactgatttt cgacgttctg aaaggaatgt tgcccgtctg gggcgcgtat
    12001 gaattaggtg tcagcccctt ctggctaggc ttaattgcca tcgccgcctg tcttggacac
    12061 atctggcccg ttttcttcgg atttaaagga ggaaaaggcg ttgctaccgc ttttggtgcc
    12121 atcgcaccca ttggctggga tctcaccgga gtaatggcgg gaacctggtt actgaccgtg
    12181 ctattgagcg gatactcgtc gctgggagcg attgtcagtg cattgattgc tccgttttat
    12241 gtctggtggt ttaagccaca attcaccttc ccggtttcga tgctctcttg cctgatcctg
    12301 ctgcgtcatc atgacaacat ccagcgtctg tggcgtcgtc aggagacaaa aatctggacg
    12361 aaattcaaaa gaaagcgcga aaaggatccc gagtgatttc tggtggatct acatgacctg
    12421 atagccttca tcgggcttgc ccagccgttg ctggcaccat gccgccagaa attccacgca
    12481 gacacgtaat ttcatgctgc gatagagcgg ctcccggtaa acagcccaga tattggcgct
    12541 ttgtgcatac tccggcaata cttgcaccag tttgccactc tccagaaacg gcaacacatc
    12601 ccactcggaa cgcagcataa tccctttgcc ctccagcgcc cattgcaaca ctatctcgcc
    12661 gctattggag gaaagatgcc cgctaacctt caccgatttt ttctcctgac cgtttcccaa
    12721 ctcccatatt ccgtgggtca tatcgcgctc tttggtcacc agacagtcat gacgacttaa
    12781 ttcctgtaat gattgtggct gcggatattt ttgcagatac tcaggtgctg cgcataatat
    12841 tcttttattt ttcgttaaca gatgcgcaat ataataatca ggaatttcgt cattaatacg
    12901 aatatccaga tcaatattat cctgcactaa atcaatttgc cgatcgaaca attcaaaatg
    12961 cacctgtaac tcaggataat tgcgcataag ttcggtaatg gctggcgcaa tatggctgcg
    13021 cccaaaacca aaactgcaac caatacgaat catcccctcc gggcgcgttt tgatttgcgt
    13081 gacgtcatcg acca
//
LOCUS       DADMHM010000114        13060 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.115, whole genome shotgun sequence.
ACCESSION   DADMHM010000114 DADMHM010000000
VERSION     DADMHM010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 13060)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13060)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13060
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.115"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(156..896)
                     /locus_tag="JN125_002708"
     CDS             complement(156..896)
                     /locus_tag="JN125_002708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidative stress defense protein"
                     /protein_id="HAY8872442.1"
                     /translation="MKFKVIALAALMGISGMAAQANELPDGPHIVTSGTASVDAVPDI
                     ATLAIEVNVAAKDAATAKKQADERVAQYISFLELNQIAKKDISSANLRTQPDYDYQDG
                     KSILKGYRAVRTVEVTLRQLDKLNSLLDGALKAGLNEIRSVSLGVAQPDAYKDKARKA
                     AIDNAIHQAQELANGFHRKLGPVYSVRYHVSNYQPSPMVRMMKADAAPVSAQETYEQA
                     AIQFDDQVDVVFQLEPVDQQPAKTPAAQ"
     gene            complement(989..1624)
                     /gene="argO"
                     /locus_tag="JN125_002709"
     CDS             complement(989..1624)
                     /gene="argO"
                     /locus_tag="JN125_002709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine exporter ArgO"
                     /protein_id="HAY8872443.1"
                     /translation="MFSYYFQGLALGAAMILLLGPQNAFVMNQGIRRQYHIMIALLCA
                     ISDLVLICAGIFGGSALLMQSPWLLALVTWGGVVFLLWYGFGAFKTAMSSNIELASAE
                     VLKQGRWKIIATMLAVTWLNPHVYLDTFVVLGSLGGQLDVEPKRWFALGTISASFLWF
                     FGLAILAAWLAPRLRTAKSQRIINLVVGCVMWFIALQLARDGIAHAQALFS"
     gene            complement(1763..2623)
                     /locus_tag="JN125_002710"
     CDS             complement(1763..2623)
                     /locus_tag="JN125_002710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small-conductance mechanosensitive channel MscS"
                     /protein_id="HAY8872444.1"
                     /translation="MEDLNVVDSINGAGSWLVANQALLLSYAVNIVAALAIIIVGLII
                     ARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGA
                     AGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADG
                     KIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRILKD
                     REMTVRLNELGASSINFVVRVWSNSGDLKNVYWDVLERIKREFDAAGISFPYPQMDVN
                     FKRVKEDKAA"
     gene            complement(2981..4060)
                     /gene="fbaA"
                     /locus_tag="JN125_002711"
     CDS             complement(2981..4060)
                     /gene="fbaA"
                     /locus_tag="JN125_002711"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016505616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HAY8872445.1"
                     /translation="MSKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSIN
                     AVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYG
                     VPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSK
                     YLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFT
                     IAASFGNVHGVYKPGNVVLTPTILRDSQEYVSKKHNLPHNSLSFVFHGGSGSTAQEIK
                     DSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVW
                     LRAGQTSMIARLEKAFQELNAIDVL"
     gene            complement(4275..5438)
                     /gene="pgk"
                     /locus_tag="JN125_002712"
     CDS             complement(4275..5438)
                     /gene="pgk"
                     /locus_tag="JN125_002712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HAY8872446.1"
                     /translation="MSVIKMTDLDLAGKRVFIRADLNVPVKDGKVTSDARIRASLPTI
                     ELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDGVDVA
                     EGELVVLENVRFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADV
                     ACAGPLLAAELDALGKALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIA
                     NTFIAAQGHDVGKSLYEADLVDEAKRLLTTCNIPVPSDVRVSTEFSETAPATLKSVND
                     VKADEQILDIGDASAQELAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADSEA
                     FSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEERAKK"
     gene            complement(5488..6507)
                     /gene="epd"
                     /locus_tag="JN125_002713"
     CDS             complement(5488..6507)
                     /gene="epd"
                     /locus_tag="JN125_002713"
                     /EC_number="1.2.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="erythrose-4-phosphate dehydrogenase"
                     /protein_id="HAY8872447.1"
                     /translation="MTVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGM
                     AHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGV
                     YGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCI
                     IPVIKLLDDAYGIESGTVTTIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAG
                     ITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIV
                     DYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA
                     TVAFR"
     gene            6879..7310
                     /locus_tag="JN125_002714"
     CDS             6879..7310
                     /locus_tag="JN125_002714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HAY8872448.1"
                     /translation="MMTLPYPYSSSARFYALRLLPGQEVFSQLHAFAQQHQLHAAWIA
                     GCTGSLTDVALRYARQEGTTLLNGTFEVISLNGTLEQSGEHLHLCVSDPHGTMLGGHM
                     MPGCTVRTTLELVIGSLEELAFSRQPCALSGYDELHISPVK"
     gene            7333..7911
                     /locus_tag="JN125_002715"
     CDS             7333..7911
                     /locus_tag="JN125_002715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HAY8872449.1"
                     /translation="MARSHFSSQALVLIVISIAINMIGGQLASMVKLPIFLDSIGTLI
                     SAVLLGPVIGMLTGLLTNLLWGLLTDPIAAAFAPVAMVIGLVAGWLARAGWFRTLPKV
                     VVSGVIITLAVTVVAVPLRTALFGGVTGSGADLFVAWMHSMGQNLVESVAITVIGANL
                     VDKILTAVIVWLLLRQLPIRTTRHFPAMAAVR"
     gene            7912..8619
                     /locus_tag="JN125_002716"
     CDS             7912..8619
                     /locus_tag="JN125_002716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HAY8872450.1"
                     /translation="MHPFTSLTLWALAACTTLILPAQTILPIYSAATFFCLIALKATR
                     RRAKYVVWLMFSLGAGLWLVHGGWLPEWLSGTPRSPERWSHAITLWLRILAIVSTSQL
                     WMQYVPVQCFIRALFASRLPPGVAYLFAGPLLVVEQLKRQLAIIHEAQRARGVPLDEG
                     WYQRLRAMPALIIPLTHNALNDLAVRGAALDMRAFRIHNRRTTLWAPADSTLQRVARY
                     TMILLMLTEFGAWIWLR"
     gene            8607..9284
                     /locus_tag="JN125_002717"
     CDS             8607..9284
                     /locus_tag="JN125_002717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter
                     ATP-binding protein"
                     /protein_id="HAY8872451.1"
                     /translation="MVTLEQFRYCPTHSTHPPFCYDFHYVKPGMVAIFGDNGSGKSTL
                     AQLMAGWYPDFLPGEITGTGTLLGTPIGHLPLNEQSATIQLVQQSPYLQLSGCTFSVE
                     EEVAFGPENLCLAEAEIMARIDAALTLTECQPLRHRHPATLSGGETQRVVIACAIAMQ
                     PKLLILDEAFSRLTPQASEMLLQRLQHWAFERGSLIILFERHRTPFLNYCQQAWQLQN
                     GALQPLC"
     gene            9278..9955
                     /locus_tag="JN125_002718"
     CDS             9278..9955
                     /locus_tag="JN125_002718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708691.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HAY8872452.1"
                     /translation="MLTLNQISYRWPGAATDCLCDISLQLKQGEWLALTGDNGAGKST
                     LLRVMAGLLTPTAGTVMLQQQAMKNLKNRQRAAKVGVLFQEAENQLFHSTVADEIAFG
                     LKLQKCPADEITQRTHAALQCCQLADTANSHPLDLHSAQRRMVAIACLEALSPPLLLL
                     DEPSRDFDENWLSVFESWLEKCRQRGTSVVAISHDAAFTRRHFSRVVRLEDGVIRNVN
                     PPDDIHP"
     gene            complement(9927..10640)
                     /locus_tag="JN125_002719"
     CDS             complement(9927..10640)
                     /locus_tag="JN125_002719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside/nucleotide kinase family protein"
                     /protein_id="HAY8872453.1"
                     /translation="MKIELTVNGLKIQAQYQNEEIENVHKPLLRMLAALQTVNPQRRT
                     VVFLCAPPGTGKSTLTTFWEYLAQQAPELPAIQTLPMDGFHHYNSWLDAHQLRPFKGA
                     PETFDVAKLAENLRQVVEGDCTWPQYDRQKHDPVEDALHVTAPLVIVEGNWLLLDDEK
                     WCQLAQFCDFSIFINAPATALRERLVGRKLAGGVSLADAEAFYDRTDGPNVRRVLEES
                     LPANLTLMMTATGEYRLVD"
     gene            complement(10637..11146)
                     /gene="fumE"
                     /locus_tag="JN125_002720"
     CDS             complement(10637..11146)
                     /gene="fumE"
                     /locus_tag="JN125_002720"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarase E"
                     /protein_id="HAY8872454.1"
                     /translation="MAKLTEDDVLEQLDAQDNLFSFMKTAHSILLQGIRQFLPSLFVD
                     NDEEIVEYAVKPLLAQSGPLDDIDVALRLIYALGKMDKWLYADITHFSQFWHYLNEQD
                     ETPGFADDMTWDFISNVNSITRNAMLYDALKAMKFADFAVWSEARFSGMVKTALTLAV
                     TTILKELTP"
     gene            complement(11168..12133)
                     /gene="yggF"
                     /locus_tag="JN125_002721"
     CDS             complement(11168..12133)
                     /gene="yggF"
                     /locus_tag="JN125_002721"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphatase"
                     /protein_id="HAY8872455.1"
                     /translation="MMSLAWPLFRVTEQAALAAWPQTGCGDKNKIDGLAVTAMRQALN
                     DVAFRGRVVIGEGEIDHAPMLWIGEEVGKGDGPEVDIAVDPIEGTRMVAMGQSNALAV
                     MAFAPRDSLLHAPDMYMKKLVVNRLAAGVIDLSLPLADNLRNVARALGKPLDKLRMVT
                     LDKPRLSAAIEEATQLGVKVFALPDGDVAASVLTCWQDNPYDVMYTIGGAPEGVISAC
                     AVKALGGDMQAELIDFCQAKGDYTENRQIAEQESKRCKAMGVDVNRVYSLDELVRGND
                     ILFSATGVTGGELVNGIQQTANGVRTQTLLIGGADQTCNIIDSLH"
     gene            complement(12130..>13060)
                     /locus_tag="JN125_002722"
     CDS             complement(12130..>13060)
                     /locus_tag="JN125_002722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HAY8872456.1"
                     /translation="TYMIIPEIAINLGCVLPYHGSYFAAASLVEPMCCIIGAYHANYH
                     TTQYVYEHRMGVKPGGNIALLACAGPMGIGAIDYAINGGIQPSRVVVVDIDDKRLAQV
                     QKLLPVDLAASKGIELVYVNTKGMSDPVQTLRALTGDVGFDDIFVYAAVPAVVEMADE
                     LLAEDGCLNFFAGPTDKNFKVPFNFYNVHYNSTHVVGTSGGSTDDMKEAIALSATGQL
                     QPSFMVTHIGGLDAVPDTVLNLPDIPGGKKLIYNGVTMPLTAIADFAEKGKTDPLFKE
                     LARLVEETHGIWNEQAEKYLLAQFGIDIGEAAQ"
BASE COUNT         3101 a         3571 c         3218 g         3170 t
ORIGIN      
        1 gcatccttgt ccgcttaacc gtttcagtca gcctatcctt gatgaaaccg cgagcaaaga
       61 taggtgatta cgtcatggtt ttacagaaaa ttacagaaaa aggaggcaat atcgggtaaa
      121 ggcattagcc cgacgaatac gtcgggctac aagtattatt gtgctgcagg tgttttagcg
      181 ggttgttgat ccacaggttc taactggaag accacatcga cctgatcatc aaactgaata
      241 gcggcctgct cgtaagtttc ctgggcagac accggcgcgg catcggcttt catcatccgc
      301 accattgggc tgggctgata gttggaaaca tggtagcgca cgctatatac cggccccagt
      361 ttacgatgaa agccgttcgc cagttcctgc gcctgatgaa tcgcgttatc aatcgctgcc
      421 ttacgcgctt tgtctttata ggcatccggc tgcgccacgc ccagcgacac tgaacgaatt
      481 tcgttaagac ccgccttcag cgcgccatcc agcaaggaat tcagtttgtc taactgacgg
      541 agcgtgactt ccaccgttct cacagcgcgg tagcctttca ggatactttt accatcctga
      601 taatcataat ctggctgggt gcgtaaattc gctgagctga tatctttttt cgcgatctga
      661 ttgagttcaa ggaaggaaat gtattgtgcg acgcgctcat ctgcctgttt cttggctgta
      721 gcggcatcct tcgcggccac gttaacttca atcgcaagag tggcaatgtc tggcaccgca
      781 tccacacttg ccgtaccgga ggtgacaata tgcggtccat ccggcaattc gttagcctgc
      841 gctgccatcc cgctaatacc cattaatgcc gctagggcga taactttgaa cttcacgtta
      901 gtctctccgt gttaattgac ttgcccaaaa ttcaggacct ctggaggcaa gcttagcgcc
      961 tctgttttat ttttccatca gatagcgcct aactgaacaa ggcttgtgca tgagcaatac
     1021 cgtctctcgc cagctgcaag gctataaacc acatgacaca tcccactacc agattgataa
     1081 tgcgctgtga ttttgccgtg cgcaggcgcg gtgccagcca ggctgcgaga atagccagac
     1141 caaagaacca caggaaagag gcgctaattg tcccgagcgc aaaccaacgt tttggttcga
     1201 cgtcaagctg cccgccaagg ctgcccagta caacaaaagt atccaggtaa acatgcggat
     1261 tcagccaggt cactgccaac atggtggcga taattttcca tctgccttgc ttcaggactt
     1321 cggcactagc taactcaata ttactactca tcgctgtttt aaaagcgcca aaaccatacc
     1381 agagcaagaa gactacgccg ccccaggtga ccagcgccag caaccacggc gactgcatca
     1441 ataacgcgct accaccaaaa atccccgcgc aaatcaggac caaatcgctg atagcgcaaa
     1501 gtaaggcaat cataatgtgg tactgacgac gaatgccctg attcatcaca aaagcatttt
     1561 gtgggccgag cagcagaatc atagctgccc caagagcaag accttgaaag taataagaaa
     1621 acacgttgga tattccgaat taagtatctg atgcagagac tatatcgcga gattgttatt
     1681 agcggaaatt gataatatta attggcaatc agaataacta ataagagaga ggccagagag
     1741 tattatctgg cctcagcgtt gattacgcag ctttgtcttc tttcacccgc ttaaagttca
     1801 catccatttg cgggtacggg aagctgatac cggcggcatc aaattcacgt ttaatacgct
     1861 ccagcacatc ccagtacacg tttttcagat cgccgctgtt gctccagacg cggaccacga
     1921 aattaatcga cgatgcacca agttcgttca ggcgcacagt catttcgcga tctttcaaaa
     1981 tgcgatcttc agactggata atattggtca ggatctgctt aacctgatcg atatcggaat
     2041 catacgccac gccaataata aattcgttac ggcgaactgg ctcgcgggag aagttaataa
     2101 tatttccggc aataatttta ccgttcggaa taacgataat tttaccgtct gcagtacgca
     2161 tggtggtgga gaaaatctgc acactcagca cagtaccggc tacgccgccg aggtcaacat
     2221 attctccggc acggaacggt cggaacatga caagtaacac gccagcggcc aggttagaaa
     2281 gtgacccctg caaagccaga ccaacagcta agcctgcggc accgagtaca gcaatgactg
     2341 acgctgtttg tacacccacg cgtcccaggg cagcgattag cgtaaaggcg ataataccgt
     2401 aacggactaa tgcagaaaga aaatcagcaa cagtggcatc gattttacgg gagatcatca
     2461 ggcgattcac cgcgttggaa atcatccgcg cgataatcaa accaacgatg atgatcgcga
     2521 gtgccgccac gatgtttact gcataactta gcagcagcgc ctggttagct accagccagc
     2581 ttcccgcgcc gtttatgcta tcgacaacat tcaaatcttc cattcaatat tccttttcaa
     2641 ctgactcaaa atggagaaat acactccgcc gccttatgac gggcagtctg acaagggtaa
     2701 acaataaagc ataattttgc caaatagatc acagatttct catctgaatc accttgcttt
     2761 tggcgaaaaa atccccgcag agcggggctc agacagatat caatgtgcgc tttgtcatgc
     2821 cggatgcggc gtgaacgcct tatccggcct acaaaaacct gtaaattcaa tatattgcag
     2881 gatacgtgta ggcctgataa gcgtagcgca tcaggcaatt ttgcttttgg cgaaaaaaag
     2941 acccgcagag cgggccttga gataagcaga aaggaatatc ttacagaacg tcgatcgcgt
     3001 tcagttcctg gaatgctttt tccagacgag cgatcatcga agtctgaccg gcacgcagcc
     3061 atacgcgcgg atcgtagtat ttcttgttcg gctgatcttc gcctttcggg ttacccagct
     3121 gaccctgcag ataagcttcg ttcgctttgt agtagttcag aacgccttcc caggttgccc
     3181 attgggtatc ggtatcgatg ttcattttca ctacgccgta gcttacggag tctttgattt
     3241 cctgagcagt agaaccggaa ccaccgtgga atacgaagct caggctgttg tgcggcaggt
     3301 tgtgtttctt agaaacatat tcctgagaat cacgcaggat ggtcggagtc agaaccacgt
     3361 tacccggctt gtaaacaccg tgtacgttac cgaaggacgc agcgatggtg aaacgcgggc
     3421 tgattttgct cagctcggtg tatgcgtaat caacgtcttc cggctgggtg tacagtgcag
     3481 aagcgtccat gtggctgttg tccacgccgt cttcttcacc accggtgcaa cccagttcga
     3541 tttccagagt catgccgatt ttggacatac gctccaggta tttagagcag atttcgatgt
     3601 tctcttgcag agattcttca gacaggtcga tcatgtgaga agagaacagc ggcttaccgg
     3661 tagctgcgaa gtgtttttca cccgcgtcca gcagaccgtc gatccacggc agcagtttct
     3721 tcgcgcagtg gtcagtgtgc aggataaccg gaacaccata atgttcagcc atctggtgaa
     3781 cgtgatgcgc accagagatc gcgcccagga tagcagcacc ctgcggaacg tcagatttca
     3841 cgcctttacc agcgataaag gaagcaccac cgttggagaa ctgaacgata accggcgctt
     3901 taactttagc agcagtttcc agtacggcgt tgatggagtc agtaccgacg cagtttactg
     3961 ctggcagtgc gaagttgttt tcttttgcta cctggaaaac tttctgtacg tcatcaccag
     4021 tgattacgcc aggttttacg aaatcaaaaa tcttagacat gtctcttgtc ctgtatcgtc
     4081 gggccttata ctcatcatac ttcaagttgc atgtgctgcg tctgcgttcg ctcaccccag
     4141 tcacttactt atgtaagctc ctggggattc actctcttgt cgccttcctg caactcgaat
     4201 tatttagagt atgaaaaaat gcgtgctcta aaagcgcgct gaaacaaggg caggtttccc
     4261 tgccctgtga ttttttactt cttagcgcgc tcttcgagca tcgctactgc aggcagtact
     4321 ttaccttcca cgaattcgag gaatgcgccg ccgccagtgg agatgtagga gattttgtca
     4381 gcaatgccga acaggtcgat tgctgccaga gtgtcgccgc cgccagcgat ggagaacgct
     4441 tcgctgtctg cgatagcgtt agccacgatt tcagtacctt tgcggaagtt cgggaattcg
     4501 aacacgccaa ccggaccgtt ccacagaatg gttttcgcat tcttcaggat ttcagccagt
     4561 tcctgagcgg aagcatcacc gatatccagg atctgctcgt cagctttcac atcgttaaca
     4621 gatttcaggg tagccggtgc agtttcagag aactcggttg atacgcgaac atcagacgga
     4681 accgggatgt tgcaggtggt cagcagacgt ttagcttcgt caaccaggtc agcttcgtac
     4741 agggatttac ccacatcgtg gccttgtgcc gcgataaagg tgttagcgat accaccacca
     4801 acaatcagct ggtcagcgat tttagacagg gagtccaaaa cggtcagttt ggtagatact
     4861 ttagaaccac caacgatagc caccatcggg cgagcaggtt ctttcagtgc tttacccagc
     4921 gcgtccagtt cagctgccag cagcgggcct gcgcacgcaa cgtcagcgaa tttaccgata
     4981 ccgtgagtag aagcctgcgc gcggtgagca gtaccgaatg cgtccattac gaacacgtca
     5041 cacagtgcag cgtatttttt ggacagggtt tcgtcgtctt tcttctcgcc tttgttgaag
     5101 cgaacgtttt ccagaacaac cagttcacct tcagcaacgt caacgccgtc gaggtaatct
     5161 ttaaccagac gaaccgggtt agacagtttg tctttcaggt agttaacaac cggcagcaga
     5221 gagaattctt cgttgtactc gccttcggta ggacgaccca ggtgggaagt taccatcact
     5281 tttgcgcctt gtttcagggc cagttcgatg gtcggcagag aagcacggat acgcgcgtcg
     5341 ctggttactt tcccgtcttt tactggtacg ttcagatccg cacggataaa tacacgtttc
     5401 ccagcaagat ccagatcggt catcttaatt acagacatgg tgaatcctct cgttgattct
     5461 aaaagttttg cagacgctgc ttgcgtctta cctgaaagca acagtagcca tagctaacgt
     5521 cgtgtcgagc attcggttag caaagcccca ttcgttatcg caccagacca acgttttgat
     5581 caggtgtgcg ccactgaccc gggtttgggt gccatcgaca atggcactgt gcggatcgtg
     5641 gttaaaatct acagagacca acggcaattc cgtatagtca actataccat gaaatgcacc
     5701 ttgtgctgct ttttgcagca acaggttgac ttcattggct tttacaggtt tcttcaccgt
     5761 cacgcttaaa tcgattgccg tcacatttat ggttggcaca cgtaccgcaa tcgcttcaaa
     5821 gcgatcgtta aattgcggaa aaaatcgtgt gataccggcg gccagtttag tatcgaccgg
     5881 aatgatcgac tggctggctg cccgggtgcg acgcaggtca ggatggtatg catcaataac
     5941 ctgttgatcg tgcatggcgg agtgaattgt ggtcacagtg ccggactcaa taccgtacgc
     6001 atcatctaac aatttgatga cgggaattat gcaattcgtg gtacaggaag cgttagaaac
     6061 gatgcggtgt tccgcacgaa gttgatcctg attgacgccg taaacaacgg tcgcgtcgag
     6121 atcgttactg ccaggatgtg aaaagagcac ttttttggcc ccggcggcaa tatgcgcttc
     6181 gccatgctcg cgggagccat atacgccggt gcagtcgagg actacatcaa cgccaagttc
     6241 acgccagggg agcgattgca gtgaacgttc atgcaatacg cggatggcgt catcaccaac
     6301 aaaaagttga tcgcgttcct gtcgtacttc ccatgcaaaa cggccatggc tggtgtcata
     6361 tttcaacaaa tgcgccatgc ccgcagcatc cgccagttcg ttgattgcca ccacggtaat
     6421 ttccgcccgg cgtccggatt catacaaagc acgaaccaca ttacgcccga tgcgaccgaa
     6481 gccatttatc gctacgcgta cggtcataga tctcctgcaa ggttttccct gagcaaattt
     6541 gccagacaga gtaatccagc aaatcgtccg gggaaacctt acctgtcgca aactgcgact
     6601 gattggttaa ttgtcgaaca tttaatcgac tgaaacgctt cagctaggat acgcgaaacg
     6661 tggaataaaa ggaatgattg tccagtcaaa gaaagcaatt atctgactta cgtcacgttt
     6721 tcagccccgc ccctgtggaa tttattccac tttgcagaat cacgaataag cgtagcaaaa
     6781 tcttttcgtt gtgccgtcac aaaccctgac ttatatcaga atatgactga tgcagcgtcg
     6841 atattatccg caatacgtcc gagtttcgga gtactccaat gatgacattg ccctacccat
     6901 attcttcctc cgcacgcttt tacgcactgc gcctcctccc cgggcaggaa gttttttccc
     6961 agctacacgc ttttgcacag cagcatcaac ttcatgccgc ctggattgca ggctgtaccg
     7021 gtagcctgac tgacgtcgcc ttgcgctatg ccaggcaaga aggcaccacg ctcctgaacg
     7081 gtacattcga agtgatctca ctaaacggca cgctggaaca gagtggtgag catcttcatc
     7141 tctgcgtttc cgatccacac ggcacgatgc ttggcggtca tatgatgccc ggctgtaccg
     7201 tgcggaccac gcttgaactg gtgatcggta gccttgagga actggcgttt agccgccaac
     7261 cttgcgcgct ttctggttac gacgagttgc atatttcccc cgttaaataa ctactttcaa
     7321 agaggttttc ttatggcgcg tagccacttt tccagtcagg cactggtgtt gatcgttata
     7381 tctatcgcca tcaatatgat cggcgggcaa ctggccagca tggtcaaatt acctatattt
     7441 ctcgactcca tcggcacact tattagcgcg gtactgcttg gtccggtgat cggaatgctg
     7501 accggcttac tgaccaattt actctgggga ttgctgaccg acccgatcgc cgccgcattt
     7561 gcacccgtcg cgatggtcat cggcctggtc gccggttggc tggcgcgagc gggttggttt
     7621 cgcaccctgc caaaagtcgt tgtcagcggc gtgattatta cgcttgcggt aacggtcgtc
     7681 gctgtaccgc tgcgtactgc gctgttcggc ggtgtcaccg gtagcggagc cgatttgttc
     7741 gttgcctgga tgcactcgat ggggcaaaac ctggtggagt cggtggcgat tacggtgata
     7801 ggcgcgaacc tggtcgataa aattcttaca gcggtgattg tctggctttt actgcgccag
     7861 ctgccgattc gcaccacgcg ccattttccg gcaatggctg ccgtgcgcta aatgcatcca
     7921 tttacctcat taacactgtg ggcattggcg gcctgcacca cgcttatcct gcccgcgcag
     7981 accattttgc cgatctatag cgcggcgacc tttttctgcc ttattgcgct aaaggccacg
     8041 cggcggcggg caaaatatgt cgtctggctg atgttctcgc tgggagccgg gctgtggctg
     8101 gtacacggtg gctggctacc agaatggcta agcggcacgc cacgctcgcc agaacggtgg
     8161 tcgcatgcta ttacgctctg gttgcggatt ctggcgattg tttcaacctc acagttgtgg
     8221 atgcagtacg tccccgtgca atgttttatt cgcgctctgt ttgcttctcg cctgccgcca
     8281 ggcgtcgctt atctgtttgc cgggccgtta ttggtcgttg agcagttaaa acggcaatta
     8341 gcgattattc atgaagcgca gcgtgcccgc ggcgtgccgc tggatgaggg ctggtatcag
     8401 cgtttacgtg cgatgcccgc gttaattatt ccgctaacac acaatgcgct taacgatctg
     8461 gctgtccgtg gtgcggcgct ggatatgcgg gcatttcgga tccacaaccg acgaacaacg
     8521 ttgtgggcac cagccgatag caccctacaa cgcgtagcgc gttacaccat gatcttgctg
     8581 atgctgacag aattcggagc gtggatatgg ttacgttaga acagttccgt tattgcccga
     8641 cacactcaac gcatcctccg ttctgttatg actttcacta tgtcaaaccg gggatggtcg
     8701 ccatctttgg tgacaacggc agtggcaaaa gtacgctggc acagctgatg gcgggctggt
     8761 atccggactt tctgccagga gagataacag gcacggggac gctcctcggt acgcccattg
     8821 ggcatctccc gcttaatgaa caatccgcca ccatccagct cgtccagcaa tcgccctatt
     8881 tgcagctctc cggctgtacc tttagcgtgg aagaagaagt tgcctttggg ccagaaaatc
     8941 tgtgtcttgc tgaagcagag attatggcgc ggattgatgc cgccctgact ctgaccgagt
     9001 gccagccgtt gcgccatcgt cacccggcaa cactctccgg tggagagaca cagcgcgtgg
     9061 tcatcgcctg cgccatcgcg atgcagccaa agctcttaat tcttgatgaa gcctttagcc
     9121 gcctgacgcc gcaggccagc gaaatgctgt tgcagcgctt acaacactgg gcgtttgaac
     9181 gtggttcgct gattattctt tttgaacgtc atcgcacacc tttcctgaac tactgccagc
     9241 aagcgtggca attgcaaaac ggagcgctcc agccactatg ttaacgttaa atcagatatc
     9301 ttatcgctgg cctggcgcgg caacggattg tctttgcgac atttctctgc aactcaaaca
     9361 aggtgaatgg ttggcgctga ccggtgacaa tggcgcaggg aaatcgacgc tgttacgagt
     9421 aatggcaggt cttcttacgc ccacagccgg tacggttatg ctgcaacaac aggcgatgaa
     9481 aaacctgaaa aaccgccagc gcgcggcaaa ggttggcgta ctgtttcagg aagcggaaaa
     9541 ccaacttttt cacagcaccg tcgctgacga gatcgcattt ggtttgaaac tgcaaaaatg
     9601 cccggcggat gaaatcactc aacgtaccca tgctgccctg caatgttgtc agttagcaga
     9661 cactgccaac tcgcacccgt tggatctgca tagtgcgcag cgacggatgg tcgccatcgc
     9721 ctgcctggaa gcactctctc cgccactatt actgctggac gagccgagtc gggattttga
     9781 cgaaaattgg ttgagcgtgt ttgaaagctg gctggagaag tgccgccagc gaggcacgag
     9841 cgtggtagca atcagtcatg acgccgcatt tacccggcgt catttctctc gtgtggtgcg
     9901 actggaagat ggtgtaatca ggaacgttaa tccaccagac gatattcacc cgtagcggtc
     9961 atcattaagg tcaaatttgc aggcagactc tcttccagca cccggcgaac attcggcccg
    10021 tcggtacggt cataaaaggc ttctgcatct gccagcgata cccctcccgc cagcttgcgc
    10081 cccaccagac gctcccgcaa cgcagtagct ggcgcgttga taaagatcga gaaatcacaa
    10141 aattgcgcaa gctggcacca cttctcgtcg tccagcaaca accagtttcc ttcgacgatg
    10201 acgagtggtg cggtaacgtg caacgcatct tcaacaggat catgcttttg tcgatcgtac
    10261 tgcggccacg tacaatcccc ttccaccacc tggcgcagat tttccgccag tttcgcaacg
    10321 tcaaatgtct ctggtgcgcc tttgaagggg cgcaattgat gcgcgtccag ccagctattg
    10381 taatggtgaa aaccatccat cgggagcgtc tgaatagcgg gcagctccgg ggcttgttgc
    10441 gcgagatatt cccagaaggt ggttagggta gatttacccg tccccggcgg agcgcaaaga
    10501 aaaaccaccg tacgccgctg cggatttacc gtctgtaagg ccgccagcat acgcagcaac
    10561 ggtttatgta cattttcaat ctcttcgttc tggtactgtg cctgtatctt cagcccattc
    10621 accgttaatt caattttcac ggcgttaatt cctttaagat tgtcgttact gccagcgtca
    10681 gcgccgtttt gaccatcccg ctaaaacgcg cctctgacca gacggcgaaa tcggcgaact
    10741 tcatcgcttt caacgcgtca tagagcatcg cattgcgggt tatgctattg acgttgctga
    10801 taaaatccca ggtcatgtca tcggcaaatc cgggcgtttc atcctgttcg ttcaggtaat
    10861 gccagaactg ggaaaaatgc gtgatatcgg cgtacagcca tttatccatt ttccccagcg
    10921 cataaatcaa acgcagcgca acatcaatat cgtcaagcgg gccgctttgg gcgagtaacg
    10981 gcttcactgc atattccacg atctcttcat cgttatcgac aaacagcgac ggcagaaact
    11041 ggcgtatccc ctggagcaaa atagaatgcg cagttttcat aaatgaaaat aaattgtcct
    11101 gtgcatccag ttgctcaagc acatcatctt ctgtcagctt cgctattggt cttccgatag
    11161 atcaccatca atgcagggag tctattatat tacacgtttg gtccgcgccg ccgatcagta
    11221 atgtctgcgt ccgcacccca ttcgccgtct gttggatacc gttcaccaac tcgccgcccg
    11281 tcacgcccgt agcgctaaag aggatatcgt tccccctcac cagttcatcg agcgagtaca
    11341 cacggttaac gtcaacgccc attgccttgc aacgcttgct ctcctgctct gcaatctgcc
    11401 gattttccgt gtaatcccct ttagcctgac aaaagtcaat cagctcggcc tgcatatccc
    11461 cgcctaatgc tttaacggca caggcagaaa tcacgccttc tggcgcaccg ccgatggtgt
    11521 acatcacatc gtaaggatta tcctgccagc aggtcagcac gctggcggcg acatcgccat
    11581 ccggcagggc aaaaaccttc acgcccagct gtgttgcttc ctcaatcgcg gcactcaggc
    11641 gcggtttatc cagcgtaacc atgcgcagct tgtccagcgg tttacctaac gcccgcgcca
    11701 cgttacgcaa gttgtccgcc agaggcaaag acagatcaat caccccggca gccagtcgat
    11761 taacaaccag ctttttcata tacatatcgg gcgcatgtaa caggctatcc cgaggggcga
    11821 aagccatgac cgccagcgca ttgctctgcc ccatcgccac catccgcgtg ccttcaatag
    11881 gatcaaccgc gatatcgact tctggcccat cgcctttgcc cacctcttcg ccaatccaca
    11941 gcatcggcgc atggtcaatt tctccttcgc cgataaccac tcgtccacga aaagcgacgt
    12001 cgtttaatgc ctggcgcatc gcggtgaccg ccaggccatc aattttattt ttgtcgccac
    12061 atccggtttg cggccaggca gccaacgctg cctgttccgt aacgcgaaat aatggccacg
    12121 ccagggacat cattgcgcgg cctcccctat atcaatgcca aattgtgcca gcagatattt
    12181 ctcggcctgt tcattccaga tgccgtgcgt ttcctcaacc agccgcgcca actctttaaa
    12241 tagcggatcg gttttgcctt tttcggcaaa atcggcaatg gcagtgagcg gcatggtcac
    12301 gccgttataa atgagttttt taccgccagg gatatccggc agattgagca cggtatctgg
    12361 caccgcatcc agcccaccga tatgcgtgac cataaaggac ggctgcaact gccccgtggc
    12421 gcttaacgca atcgcctctt tcatgtcgtc cgttgaaccg ccggatgtac cgactacgtg
    12481 cgtgctgttg taatggacgt tgtagaaatt aaacggcact ttgaagtttt tatccgtcgg
    12541 cccggcaaag aagttcagac agccatcttc cgccagtaat tcgtcagcca tctcaacgac
    12601 agctggcacc gccgcataaa caaaaatgtc atcgaacccg acatctcctg tcagcgcccg
    12661 cagcgtctgg accggatcgc tcatcccttt ggtattcaca tacaccagct caatgccttt
    12721 actggccgcc agatccaccg gcagcagctt ctgcacctgc gccaggcgtt tgtcgtcgat
    12781 atcgaccacc accacccgtg acggttgtat gccaccgtta atggcgtaat cgatagcgcc
    12841 aatgcccatc ggacccgcac acgccagcag tgcaatattg ccgccaggtt tgacgcccat
    12901 gcgatgctca taaacatatt gcgtggtgtg ataattggca tgataagcac caataatgca
    12961 gcacataggc tctaccagcg acgccgcagc aaaataagag ccgtgatacg gtaatacgca
    13021 gcccaaatta atggcgattt cgggaataat catataggtg
//
LOCUS       DADMHM010000115        12977 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.116, whole genome shotgun sequence.
ACCESSION   DADMHM010000115 DADMHM010000000
VERSION     DADMHM010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12977)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12977)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12977
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.116"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            43..1215
                     /locus_tag="JN125_002723"
     CDS             43..1215
                     /locus_tag="JN125_002723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath protein"
                     /protein_id="HAY8872457.1"
                     /translation="MAQDYHHGVRVVEVNEGTRSITTVSTAIVGMVCTGDDADAKMFP
                     LNKPVLITDVLTASGKAGESGTLARSLDAIADQAKPVTVVVRVPQGETEEETTTNIIG
                     AVTAEGKKTGMKALLSAQSQLGVKPRILGVPGHDTKAVATELLSVAQSLRGFAYLSAY
                     GCKTVQEAITYRENFSQREGMLIWPDFTGWDTVLNAEATAYATARALGLRAKIDEQTG
                     WHKSLSNVGVNGVTGISADVFWDLQDPATDAGLLNQNDITTLIRKDGFRFWGSRCLSD
                     DPLFAFENYTRTAQVLMDTMAEAHMWAVDKPLNPSLARDIIEGIRAKMRSLVSQGYLI
                     GGDCWLDESVNDKDTLKAGKLTIDYDYTPVPPLENLMLRQRITDQYLVNFSSQVSA"
     gene            1225..1740
                     /locus_tag="JN125_002724"
     CDS             1225..1740
                     /locus_tag="JN125_002724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
                     /protein_id="HAY8872458.1"
                     /translation="MALPRKLKHLNLFNDGNNWQGIVESLTLPKFTRKYEKYRGGGMP
                     GAVDVDLGLDDSALDTEFSIGGTELLLFKQMGKATVDGIQLRFTGSIQRDDTGEVQAV
                     ELVVRGRHKEVDSGEWKTGESNTTKVTSTNSYAKLTINGEVLYEVDLINMVEIVDGVD
                     LMEAHRNALGL"
     gene            1795..2097
                     /locus_tag="JN125_002725"
     CDS             1795..2097
                     /locus_tag="JN125_002725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_461627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein"
                     /protein_id="HAY8872459.1"
                     /translation="MSDKQTEKTIQLDTPIMRGKTEITEIVLRKPQSGALRGTRLQAI
                     MDMDVNAMMTVIPRISSPALTAQEIAEMDPADLTAMSVEVVTFLLKKSVLAGLPTA"
     gene            2112..2231
                     /locus_tag="JN125_002726"
     CDS             2112..2231
                     /locus_tag="JN125_002726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HAY8872460.1"
                     /translation="MADIATIFHWPPSVTDVMPLTEVLEWRDKAIQRSGASHE"
     gene            2224..5301
                     /locus_tag="JN125_002727"
     CDS             2224..5301
                     /locus_tag="JN125_002727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001282780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HAY8872461.1"
                     /translation="MSDNNLRLQVILNAVDKLTRPFRSAQASSRELAAAVKKSRDAIK
                     QLDQAGSSLDSFRKLQAENQKLGDRLNYARQRANLLSQELGAMGPPSQRQVVALGRQR
                     LAVQRLEERQKKLQQQTALVRAELYRAGISANDGASATARITRETMRYNRQLSEQEAR
                     LRRVGEQQRKMHAARGAYARRLEVRDRIAGAGATTTAAGLAMGAPVMAAVKSYTSMED
                     AMKGVAKQVNGLRDDNGNRTARFYEMQGAIKAASEQLPMENGAVDFAALVEGGARMNV
                     ANPDDSWEDQKRDLLAFASTAAKAATAFELPADELSESLGKIAQLYKIPTRNIEQLGD
                     ALNYLDDNAMSKGADIIDVMQRLGGVADRLDYRKAAALGSTFLTLGAAPEVAASAANA
                     MVRELSIATMQSKSFFEGMNLLKLNPEVIEKQMTKDAMGTIQRVLEKVNALPQDKRLS
                     AMTMLFGKEFGDDAAKLANNLPELQRQLKLTAGNDALGSMQKESDINKDSLSAQWLLV
                     KTGAQNTFSSLGETLRQPLMDILYTVKSVTGALRRWVEANPELTGTLMKVAAVVAAVT
                     VGLGTLAVALAAVLGPLAVIRLGFSVLGIKTLPSVTAAVTRTSNALSWLAGAPLALLR
                     RGLASSGNAAGLLTAPLSSLRRTASLTGNVLKTVAGAPVALLRSGLSGLRAVAVMFMN
                     PLAVLRGGLAATGTVLRMLASGPLAMLRVALYAVSGLLGALLSLIGLVVTALAGVALV
                     VWKYWQPITAFLGGVVEGFKAAAGPVSAAFEPLKPVFQWIGDKVQALWGWFTDLLTPV
                     KSTSAELQSAAAMGRRFGEALAEGLNMVMHPLDSLKSGVSWLLEKLGIVSKEAAKAKL
                     PESVTRQQPATVNADGKVMMPSGGFPSWGYGFAGMYDSGGYIPRGQFGIVGENGPEIV
                     NGPANVTSRRNTAALAAVVAGMMGVAATPVELPPLHPLALPAKGGEAMVSRAATVPPV
                     QRIEAPMQIIIQTQPGQSAQDIAREVARQLDERERRLKAKARSNYSDQGGYDA"
     gene            5298..5783
                     /locus_tag="JN125_002728"
     CDS             5298..5783
                     /locus_tag="JN125_002728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY8872462.1"
                     /translation="MMMVLGLYVFMLRTVPYQELQYQRSWRHAANSRVNRRPSTQFLG
                     PDNDMLTLSGVLMPEVTGGRLSLLALEQMAEQGKAWPLIEGSGTIYGMYVIEGLNQTK
                     TEFFRDGMPRRIEFTLSLKRVDESLSDMFGDLSAQLNNLQGTATSALSDISKTVGGLL
                     S"
     gene            5780..6880
                     /locus_tag="JN125_002729"
     CDS             5780..6880
                     /locus_tag="JN125_002729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage late control D family protein"
                     /protein_id="HAY8872463.1"
                     /translation="MNFSSELLNKGNKTPAFSISIEGRDITTVLDNRLMGLTLTDNRG
                     FEADQLDLELDDADGKIVLPRRGAVITLALGWKGQPLFPKGAFTVDEIEHTGAPDRLT
                     IRARSADFRETLNTRREKSWHKTTVGEVVKEIAARHKLKMALGEDLSDKLVEHIDQTN
                     ESDGSFLMRLARQYGAIASVKNGNLLFIRQGQGKSASGKPLPVITITRKDGDSHRFTL
                     ADRGAYTGVIASWLHTREPAKKESTTVKRKRRTKKQKKEPEAKQGDYLVGTDENVLVL
                     NRTYANRSNAERAAKMQWERLQRGVASFSLQLAEGRADLYTEMPVKVSGFKQPIDDAE
                     WTITTLTHTVSPDNGFTTSLELEVRIDDFEME"
     gene            6971..7189
                     /locus_tag="JN125_002730"
     CDS             6971..7189
                     /locus_tag="JN125_002730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001504085.1"
                     /note="in E. coli K-12 this is in prophage P2 remnant;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HAY8872464.1"
                     /translation="MMICPLCGSAAHTRSSFQVSSLTKERYNQCQNINCSHTFVTHET
                     FVRSIATPKESNPVQPHPMKSGQVALSL"
     gene            complement(7425..9110)
                     /locus_tag="JN125_002731"
     CDS             complement(7425..9110)
                     /locus_tag="JN125_002731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001024888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate:alanine antiporter"
                     /protein_id="HAY8872465.1"
                     /translation="MNINVAELLNGNYILLLFVVLALGLCLGKLRLGSIQLGNSIGVL
                     VVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGS
                     ALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHSGMESRQLSLALDNLS
                     LGYALTYLIGLVSLIVGARYLPKLQHQDLQTSAQQIARERGLDTDANRKVYLPVIRAY
                     RVGPELVAWTDGKNLRELGIYRQTGCYIERIRRNGILANPDGDAVLQMGDEIALVGYP
                     DAHARLDPSFRNGKEVFDRDLLDMRIVTEEVVVKNHNAVGKRLAQLKLTDHGCFLNRV
                     IRSQIEMPIDDNVVLNKGDVLQVSGDARRVKTIADRIGFISIHSQVTDLLAFCAFFVI
                     GLMIGMITFQFSTFSFGMGNAAGLLFAGIMLGFMRANHPTFGYIPQGALSMVKEFGLM
                     VFMAGVGLSAGSGINNGLGAIGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRALLFGA
                     MMGARTCAPAMEIISDTARSNIPALGYAGTYAIANVLLTLAGTIIVMVWPGLG"
     gene            9380..9757
                     /locus_tag="JN125_002732"
     CDS             9380..9757
                     /locus_tag="JN125_002732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872466.1"
                     /translation="MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLF
                     FILPGAVASFFSQRREVLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFW
                     CALGALCFLFISSLFKPQHRKNQ"
     gene            complement(9787..10044)
                     /gene="grxA"
                     /locus_tag="JN125_002733"
     CDS             complement(9787..10044)
                     /gene="grxA"
                     /locus_tag="JN125_002733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin 1"
                     /protein_id="HAY8872467.1"
                     /translation="MQTVIFGRSACPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGIT
                     KEDLQQKAGKPVETVPQIFVDQQHIGGYTDFAAWVKENLDA"
     gene            10204..10491
                     /locus_tag="JN125_002734"
     CDS             10204..10491
                     /locus_tag="JN125_002734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1418 family protein"
                     /protein_id="HAY8872468.1"
                     /translation="MRAIGKLPKGVLILEFIGMMLLAVALLSVSDSLSLPEPFSRPEV
                     QILMIFLGVLLMLPAAVVVILQVAKRLAPQLMNRPPQYSRSEREKDNDANH"
     gene            10475..11197
                     /gene="nfsA"
                     /locus_tag="JN125_002735"
     CDS             10475..11197
                     /gene="nfsA"
                     /locus_tag="JN125_002735"
                     /EC_number="1.5.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase NfsA"
                     /protein_id="HAY8872469.1"
                     /translation="MTPTIELICGHRSIRHFTDEPISEAQCEAIINSARATSSSSFLQ
                     CSSIIRITDKALREELVTLTGGQKHVAQAAEFWVFCADFNRHLQICPDAQLGLAEQLL
                     LGVVDTAMMAQNALTAAESLGLGGVYIGGLRNNIEAVTKLLKLPQHVLPLFGLCLGWP
                     ADNPDLKPRLPASILVHENSYQPLDKDALAQYDEQLAEYYLTRGSNNRRDTWSDHIRR
                     TIIKESRPFILDYLHKQGWATR"
     gene            11258..12160
                     /gene="rimK"
                     /locus_tag="JN125_002736"
     CDS             11258..12160
                     /gene="rimK"
                     /locus_tag="JN125_002736"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6--L-glutamate ligase"
                     /protein_id="HAY8872470.1"
                     /translation="MKIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPA
                     ASSIHYKGRKLPHFDAVIPRIGTAITFYGTAALRQFEMLGSYPLNESVAIARARDKLR
                     SMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAA
                     ESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKEGDFRSNLHRGG
                     AASVASITPQEREIAIKAARTMALDVAGVDILRANRGPLVMEVNASPGLEGIEKTTGI
                     DIAGKMIRWIERYATTEYCLKTGG"
     gene            12248..12724
                     /locus_tag="JN125_002737"
     CDS             12248..12724
                     /locus_tag="JN125_002737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjN domain-containing protein"
                     /protein_id="HAY8872471.1"
                     /translation="MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVF
                     DAKIDLIDNTILFSAMAEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVC
                     QSLSVMQGVTYEQFAWFVRQSEEQISMVILEANAHQLLLPTDDEGQNNVTENYFLH"
BASE COUNT         3169 a         3206 c         3645 g         2957 t
ORIGIN      
        1 caacataggg cgaagcctaa tccaatcagg aggttcgcca ctatggctca ggattaccac
       61 cacggggtgc gcgttgttga agtcaacgaa ggcacccgat ccattaccac ggtgagcacc
      121 gccatcgtgg gtatggtctg cacgggcgat gatgccgatg caaaaatgtt tcctcttaat
      181 aaacctgtgc tgatcactga tgtgctgacc gccagcggta aagcgggtga gtctggcacg
      241 ctggcccgtt cgctggatgc catcgctgac caggcaaaac ccgtgaccgt tgttgtgcgt
      301 gtgccgcagg gtgaaacgga agaagaaacc acaaccaata tcattggcgc agtgaccgcc
      361 gagggtaaaa aaacaggtat gaaagccctg ttatctgccc agtcacagct cggcgttaaa
      421 ccgcgcattc tcggcgtgcc aggtcacgac acgaaggcgg tagctactga gttgctgagc
      481 gtggcgcaaa gcctgcgtgg atttgcttac ctgtcagcgt atggttgcaa gacggtgcag
      541 gaagcaatca cttaccgtga aaacttcagt cagcgtgaag gaatgctgat ctggcccgac
      601 tttactggct gggacacggt gctgaatgcc gaagcaacgg cttatgccac cgcccgtgcg
      661 ctcggtctgc gcgctaaaat tgatgagcag accggatggc acaaaagcct gtccaacgtg
      721 ggcgtgaacg gtgtcaccgg aatttctgct gatgtgttct gggatctgca ggacccggca
      781 accgatgcag gtctgcttaa ccagaacgat atcaccacgc ttatccgcaa agacggtttc
      841 cgcttctggg gttcccgctg tctgagcgat gatccgctct ttgccttcga aaactacacc
      901 cgcacggcgc aggtgctgat ggacacgatg gcagaagcgc acatgtgggc ggtggacaaa
      961 ccgctgaacc cgtcgctggc ccgcgacatt atcgaaggta tccgcgccaa aatgcgtagc
     1021 ctggtcagtc agggctatct cattggtggt gattgctggc tggacgagtc ggtgaacgat
     1081 aaagacacgc tgaaagccgg gaaactcacc atcgattacg actacacgcc agtgccgcca
     1141 cttgaaaacc tgatgctgcg tcagcgcatc accgatcagt acctggtgaa tttctccagc
     1201 caggtcagcg cgtaagggga caacatggct ttaccacgca aattaaaaca cctgaacctg
     1261 tttaacgacg ggaacaactg gcaggggatc gttgagtcgc tgacgctgcc gaaattcacc
     1321 cgcaaatatg agaagtatcg cggcggcggt atgcccggag cggtggatgt ggatctggga
     1381 ctggatgaca gtgcactgga tacagaattt tccattggtg gtactgaact gctgctgttt
     1441 aagcagatgg gcaaagccac ggtggatggc atccagctgc gctttaccgg ctctattcag
     1501 cgtgatgata ccggggaagt gcaggccgtg gagcttgtgg tgcgtggacg tcacaaagaa
     1561 gtagattccg gcgagtggaa gacgggcgaa agcaacacta ccaaagtgac cagtaccaac
     1621 agctacgcga agctgaccat caatggtgag gtgctctatg aagtggacct gatcaacatg
     1681 gtggaaattg tggacggtgt ggacctgatg gaagcgcacc gcaacgccct cggcctctga
     1741 tgtatctgaa cggcgcggaa tgccgcgcca gaacctaatt tacaggacaa caaaatgagc
     1801 gataagcaga ctgaaaagac cattcaactg gatactccca tcatgcgcgg taaaacagaa
     1861 attaccgaaa ttgtgttgcg taaaccgcag tccggtgcgc tgcgcggcac acgcctgcag
     1921 gccattatgg atatggatgt gaacgcgatg atgaccgtga tcccccgcat ctccagtccg
     1981 gcactgactg cacaggaaat tgcagagatg gacccggcag atctcactgc catgtcggtt
     2041 gaggttgtca cttttttgtt gaagaagtcg gtgcttgccg gtttaccgac agcctgacgg
     2101 ttgacgatct ggtggctgat atcgccacca tctttcactg gccgccatcc gttactgacg
     2161 ttatgccgct gaccgaagtg ctggaatggc gggataaagc gattcagaga agcggggcca
     2221 gccatgagtg acaataacct gcgtctgcag gtgattctta atgcggttga caaactcacc
     2281 cgcccatttc gatccgcgca ggccagttca agagaactgg ctgctgctgt caaaaaatcc
     2341 cgcgatgcaa taaagcagct tgatcaggcc gggagcagtc tggacagctt ccgaaagctg
     2401 caggcagaaa atcagaaatt aggcgacagg ctgaactatg cccgccagcg tgcaaatttg
     2461 ctcagtcagg aactgggagc gatggggccg ccttcgcaac gtcaggttgt tgctctgggc
     2521 cgtcaacggc tggctgttca gcgcctggaa gaacgccaga aaaagctgca gcagcagacg
     2581 gcgcttgtgc gtgcagaact ttatcgtgct ggtatttcag ctaatgatgg cgccagtgcg
     2641 acggcccgca ttacccgtga aacgatgcgt tataacaggc agctttctga gcaggaagcg
     2701 aggttacgac gtgtcgggga gcaacagcga aaaatgcacg ccgcccgggg ggcttacgcc
     2761 aggcgtcttg aggtaaggga tcgtattgca ggtgccggag ccaccaccac ggctgcaggg
     2821 ctggcaatgg gcgcaccagt gatggcggca gtaaaaagct ataccagcat ggaagatgcc
     2881 atgaaaggtg tggcaaagca ggtcaatggt ctgcgtgacg ataatggcaa ccgcactgcg
     2941 cgtttttacg aaatgcaggg tgccatcaag gctgccagcg aacagttgcc gatggaaaac
     3001 ggtgctgtgg acttcgccgc actggttgaa ggtggtgcgc gcatgaacgt cgcaaaccct
     3061 gacgacagct gggaagacca gaaacgtgac ctgctggcct tcgccagcac ggcggcaaag
     3121 gcggcaacag cctttgaact gccagcggat gaactgtcag aaagtctggg gaaaatcgcc
     3181 cagctctaca aaatccctac ccgcaatatt gagcagctcg gtgatgcgct gaactatctg
     3241 gatgataacg ccatgtcgaa aggggcggac atcattgatg tcatgcaacg cctgggcggt
     3301 gtggctgacc gtctggatta tcgtaaagcg gcggcgctgg gttccacctt cctgacactc
     3361 ggcgctgcgc ctgaggttgc agccagtgca gcaaacgcga tggtgcgtga attgtccatt
     3421 gccaccatgc aaagcaagag tttctttgaa gggatgaatc tgctgaaact caatccagaa
     3481 gtgattgaaa agcagatgac gaaggatgcg atgggaacta tccagcgggt gctggagaag
     3541 gtgaatgcgc tgccacagga taagcgcctg tctgccatga ccatgttgtt tggtaaagag
     3601 tttggcgatg acgcagcgaa actggcaaac aacctgccgg aacttcagcg ccagttaaaa
     3661 ctgactgcgg gcaatgatgc gctcggttcc atgcagaaag aatccgacat caacaaggat
     3721 tcactttctg ctcagtggtt gctggtcaaa accggagcac agaacacctt cagcagcctg
     3781 ggggaaacgc tgcgccagcc gctgatggat attctgtaca cggtgaaaag cgtcacgggg
     3841 gcgttgcgtc gctgggtgga agctaacccg gaactgacgg gcactctgat gaaagtagcc
     3901 gctgtggtag ctgccgttac cgtgggcctc ggcaccttag cggtggcgct ggctgcagtg
     3961 ctggggccgc tggcagtcat ccgtctggga ttctctgtgc tgggtatcaa aacgttacct
     4021 tccgttacgg cagcagtaac ccgaaccagc aacgcgttgt cctggctggc tggcgcacca
     4081 ctggcactgc tgcgacgcgg gcttgcttca tcgggcaacg ctgcaggttt acttactgcg
     4141 ccgttgtcgt ctttgcgccg cacggcatca ctgacgggaa atgtcctgaa aactgtagca
     4201 ggtgcgccgg ttgcactttt gcggtctgga ttatccggtt tacgtgcggt tgctgtgatg
     4261 tttatgaatc cactggcggt actacgcggc ggactggctg ccacaggcac ggtgctgcgt
     4321 atgctcgcat ccggtccact ggcgatgctg cgcgttgccc tgtatgccgt ctctggtctg
     4381 ttaggtgctc tgctcagtct gataggtctt gtggttactg cactggcggg tgtggcgctg
     4441 gttgtctgga aatactggca gcccatcacc gcatttctcg gtggcgtggt ggaaggattc
     4501 aaagcggcgg caggtcctgt cagtgccgcg ttcgaaccgc ttaagcctgt gttccagtgg
     4561 attggcgaca aagtacaggc gctgtggggc tggtttactg atctgctgac gcccgttaag
     4621 tcgacctctg ccgaactgca gagtgcagcg gcaatggggc gacgattcgg ggaggctctg
     4681 gcggaagggc tgaatatggt catgcatccg ctggactccc tgaaatccgg cgtttcctgg
     4741 ttgctggaga aacttggcat tgtcagtaaa gaggccgcaa aggcgaaact gccggaaagc
     4801 gtgacgcgtc agcaacctgc gacggtgaat gcagacggta aagtgatgat gccatcgggt
     4861 ggttttccgt catggggata tggctttgcg gggatgtatg acagcggcgg gtatatcccg
     4921 cgcgggcagt ttggcatcgt cggtgaaaac gggccggaaa ttgttaacgg cccggcaaat
     4981 gtgaccagcc ggagaaatac agctgcactg gctgccgttg ttgccggaat gatgggtgtt
     5041 gctgctacgc cagtagagct tccaccgttg caccctttgg cacttcccgc gaaaggcggt
     5101 gaagcgatgg tgagtcgtgc agccactgtg ccgcccgttc aacggattga ggcaccgatg
     5161 cagatcatca ttcaaacgca gccaggacaa agtgcgcagg atattgcgcg ggaggtggcc
     5221 cgccagcttg atgaacgtga acgcaggctg aaggcaaaag ccaggagtaa ctacagcgat
     5281 caggggggat acgacgcatg atgatggtgc tgggattgta cgtgtttatg ctgcgcaccg
     5341 tgccgtatca ggagctgcag tatcaacgca gctggcgaca tgcggcaaac agccgggtaa
     5401 accgacgccc gtcaacgcag tttctgggac cggacaacga catgctgacg ctttctggtg
     5461 ttcttatgcc ggaggtaacg ggcggcaggc tgtcgttgct ggctctggag cagatggcag
     5521 aacagggaaa agcatggccc ctgattgaag gcagcggcac gatttacggc atgtatgtga
     5581 ttgagggact gaatcagact aaaacggagt ttttccgcga cggtatgccg cgccggattg
     5641 agttcaccct gtcgctaaaa cgcgtggatg aatccctgtc cgatatgttc ggtgatctca
     5701 gtgcgcaact gaataatctg cagggaacgg caacatctgc cttaagcgat atcagtaaaa
     5761 cggtgggagg gctgctgtcg tgaatttcag ctctgaactg cttaacaaag gcaacaaaac
     5821 tccggcattc agcatcagta ttgaaggcag ggatatcacc actgtgctgg acaaccgcct
     5881 gatggggctg acgctgacgg ataaccgggg ctttgaagcg gaccagcttg atctggagct
     5941 ggacgacgcc gatggaaaaa tcgtgctgcc gcgccgtggg gctgtcatta cgctggcgct
     6001 gggctggaag ggacagccgc ttttcccgaa aggggcattc acggtggacg agattgaaca
     6061 cactggcgca ccggatcgcc tgactatccg ggcgcgaagt gctgattttc gtgaaacgct
     6121 gaatacccgc cgtgaaaagt cgtggcacaa gaccaccgtt ggggaagtgg tgaaggaaat
     6181 agctgcgcgg cacaaactga agatggcatt gggtgaagac ttgtcggata aactcgtgga
     6241 gcatatagac cagactaatg agagtgacgg cagttttttg atgcggctgg cgcgccagta
     6301 cggtgctatt gcgtcggtga aaaatggcaa tctgttattc atccggcagg ggcagggtaa
     6361 aagcgccagc ggtaaaccac taccggtgat cactatcaca cgcaaggacg gcgacagtca
     6421 ccgctttacc ctggcagatc gcggagctta cacgggcgtc attgccagct ggttgcatac
     6481 ccgcgaaccc gcgaagaaag aaagcaccac ggtgaagcgt aagcgcagga ctaagaagca
     6541 gaagaaagag ccggaagcga agcagggcga ttacctggtg ggtacggatg aaaacgtgct
     6601 ggtacttaat cgcacttatg ccaaccggag caacgccgaa cgggcagcga aaatgcagtg
     6661 ggaacgcctg caacgcggcg ttgcatcatt ctcgctacaa ctggcggaag ggcgggcaga
     6721 tctctacaca gaaatgcctg tgaaggtcag tggctttaaa cagccgatag atgatgcgga
     6781 atggaccatt acgactctga cgcatactgt cagcccggat aacggtttta cgaccagtct
     6841 ggagcttgaa gtgaggattg atgatttcga aatggaatga ttcttcgcaa tggagaactt
     6901 ttaagcttgc aaaatggaat aatgcggtat cattattgtg aatttagcaa aaatggggag
     6961 agctcgaaaa atgatgattt gcccactgtg tggaagtgcc gcccatactc gcagcagttt
     7021 tcaggtatct tcattgacca aagagcgtta caaccagtgc cagaacatta actgcagcca
     7081 tacttttgtt acccatgaaa cttttgttcg ttcgattgca acgccaaaag agtcaaatcc
     7141 ggttcagccg catccaatga aatcaggaca ggtggcgctc tctctttgac gctgccgcca
     7201 ttttgtcgcc atcgttaaaa aacagtgctt ctaacatcat gattttaaaa ggcataaatt
     7261 tcagacaaca aaaaacccat caaccttgaa ccgaaatggc ggggttgatg ggctccacaa
     7321 aatggggaca tcaaagaaaa gcagtggcac taattaagac tgatgccctg cggaaaagtt
     7381 ctgcggttgt gcaaaaaaat ttcattttca gggcaacttc agttttatcc taatcctggc
     7441 cataccatga cgatgattgt ccctgccagc gtcagcagga cgttggcgat tgcgtaggtg
     7501 cccgcatagc ccagcgcagg gatgttactg cgagctgtat cactgatgat ctccattgcc
     7561 ggcgcgcagg tgcgtgcgcc catcattgcg ccgaacaaca gtgcgcggtt cattcgcaat
     7621 acataagcac cgaacaagaa acagataacc acgggcacaa gactgacaat taatccggca
     7681 atcaacatct gaccgccaat cgcgcccagg ccgttattaa taccgctacc ggcgctcaga
     7741 ccaacgcctg ccataaacac catcaagccg aactctttca ccatgcttaa tgcaccttgc
     7801 ggaatgtaac cgaaggtcgg gtggttagca cgcataaagc ccagcataat tccggcgaat
     7861 aacaacccgg cagcgttccc catgccgaaa ctgaatgtgc tgaactggaa ggtgatcatc
     7921 ccgatcatca gcccaataac aaagaaggcg caaaatgcca gcaggtcagt gacctggctg
     7981 tgaatcgaga taaagccgat gcgatcggcg atggttttta cgcgacgggc atcaccgctg
     8041 acttgtaaaa cgtcaccttt gttaagcacg acgttgtcat ctatcggcat ctcaatctgg
     8101 ctacgaatga cgcggttaag gaagcaaccg tgatcggtca acttcagttg tgcgagacgt
     8161 ttacctacag cgttatggtt tttaacgacc acttcttcag tgacgatacg catgtcgaga
     8221 aggtcacgat cgaaaacttc tttaccgtta cggaagctgg gatcgagtcg ggcatgggcg
     8281 tcgggatagc ctaccaacgc tatttcatcg cccatttgta gcacggcatc accgtctgga
     8341 tttgccagaa tcccgttacg tcgaatacgt tcaatgtagc agccggtttg tcgataaata
     8401 cccagttcac gcagattttt gccgtcggtc caggccacca gctccgggcc gacgcgatag
     8461 gcgcggatca ccggtaaata aaccttacgg ttggcatcag tgtccaggcc acgttcgcgg
     8521 gcgatttgct gggcgctggt ctgtaagtcc tgatgctgca atttcggcaa gtaacgcgca
     8581 ccaacaatca aactcaccag accgattaaa taggttaagg catacccgag gctcagatta
     8641 tccagtgcca gtgagagctg cctgctttcc atgccggaat gacgcagtgt atcgccagca
     8701 ccgaccagaa ccggtgtcga cgtcatagag cctgctaaca taccggccgt caggccaata
     8761 tcccagccaa acagcttacc taaccctaag gcgatcacca gcgcactgcc aaccatcacc
     8821 agtgctaaca ttaggtaatt tttcccatcg cgaaaaaaaa tggaaaaaaa gttcggtccg
     8881 gcttcgaccc cgacgcagaa aataaacagc ataaagccaa gattaagcgc atcggtgtta
     8941 atgctgaaat gttgttggcc taataacagc gatacgacta aaacgccaat ggaattaccc
     9001 agttggatcg aaccaagtcg taactttccg agacatagcc caagcgcgag gaccacaaat
     9061 aataacagaa tgtaattccc atttaacaat tcggcgacgt ttatattcac ggaggctaac
     9121 ttcttgttta ctagtaagct gttgaaagaa atggtaattt acgataatgt tttttaccag
     9181 aattcagggc gcagattcat tcagcgcacc taaacgatag taaagtaaca atatatttta
     9241 ctagtgtaat cacattaggt atcaacggct atatgaattg cgttggccta tattagcatg
     9301 gaatgcgaag cggctttatc ttactgaacg ccacactggc gaaaaatgtg ttcgatagac
     9361 gcagtgtcag gaggaacgag tgaaacataa acaacgttgg gcgggggcaa tctgctgttt
     9421 tgtcctcttc attgtggtgt gcctttttct ggcgacgcac atgaaaggcg cttttcgggc
     9481 tgccgggcat cctgaaatcg gcttgctgtt tttcattctt cctggagcag ttgccagttt
     9541 cttttcacag cgtagagaag tcctgaaacc tctatttggc gcaatgctgg cggcaccctg
     9601 ttcaatgctc attatgcggc tgtttttttc accgacgcgc tcattctggc aagagctggc
     9661 atggttacta agcgcggtgt tctggtgtgc gctgggggca ctgtgtttct tatttatcag
     9721 tagtttgttt aaaccacagc acagaaaaaa tcagtaaagc cctcaacgcg agggcttgtc
     9781 agacgatcag gcgtccagat tttctttcac ccatgcagca aaatcggtat agccgccgat
     9841 atgttgctga tcgacaaaaa tctgcggcac ggtttctacg ggtttacctg ccttttgttg
     9901 tagatcttct ttagtgatcc cttccgcacg aatatctaca tactgatact gaaaatcatc
     9961 gcgttcattg ctcaatttct cagccagatc ttttgcacgc acacagtaag ggcaagccga
    10021 acgaccaaaa ataacggttt gcattatttc tctcctcata gatttatgcc tgtaatgatc
    10081 acgctaaaat gtattcgctg aaagtaggtt taacctgttg cattaattgc taaaagctat
    10141 aactgttaaa cacaatacag tgaaaagttt tagactgaag gctcactttg cagagggaag
    10201 cgtatgcgcg cgatcggtaa attgcctaaa ggcgtgttga tactggaatt tatcggaatg
    10261 atgctactgg cggtggcgct gctgtcggta agcgactccc tgtcgctgcc tgagccattt
    10321 tctcggccag aagtgcagat tctgatgatt tttctcggtg ttttgctcat gcttcccgct
    10381 gcggtggtgg ttattcttca ggtggcaaaa cgtcttgccc cacagctgat gaaccgtcca
    10441 ccgcaatatt cacgttcaga aagagaaaaa gataatgacg ccaaccattg aacttatttg
    10501 tggccatcgc tccattcgcc atttcactga tgaacccatt tccgaagcgc agtgtgaggc
    10561 gattattaac agcgcccgtg cgacgtccag ttccagtttt ttgcagtgta gtagcattat
    10621 tcgcattacc gacaaagcat tacgtgaaga actggtgacg ctgaccggcg ggcaaaaaca
    10681 cgtagcgcaa gcggcggagt tctgggtgtt ctgtgccgac tttaaccgcc atttacagat
    10741 ctgtccggat gctcagctcg gcctggcgga acaactgttg ctcggtgtcg ttgatacggc
    10801 aatgatggcg cagaatgcat taaccgcagc ggaatcgctg ggattgggcg gggtatatat
    10861 cggcggcctg cgcaataata ttgaagcggt gacgaaactg ctgaaattac cgcagcatgt
    10921 tctgccgctg tttgggctgt gccttggctg gcctgcggat aatccggatc tcaagccgcg
    10981 tttaccggcc tccattttgg tgcatgaaaa cagctatcaa ccgctggata aagacgcact
    11041 ggcgcagtat gacgagcaac tggcggaata ttacctcacc cgtggcagca ataatcgccg
    11101 ggatacctgg agcgatcata tccgccgaac aatcattaaa gaaagccgcc catttattct
    11161 ggattatttg cacaaacagg gttgggcgac gcgctaaaac cgccacgtcg atgtatgata
    11221 cgcgggcttt tgaccaggtc tgacagagag gtgcagggtg aaaattgcca tattgtcccg
    11281 ggatggaacg ctctattcgt gtaagcggct gcgtgaagcc gctatacagc gcggtcacct
    11341 ggttgaaatt cttgatccgc tttcttgcta catgaacata aatcctgcgg cgtcttctat
    11401 tcactacaaa ggccgcaagt taccccattt tgacgcagtg atcccgcgta ttggcaccgc
    11461 cattaccttt tatgggacgg cggcactgcg ccagttcgag atgctgggga gctatccgct
    11521 caatgagtcg gtcgccattg cccgggcgcg tgacaaattg cgttccatgc aactgctggc
    11581 gcgtcagggc atcgacctgc ctgtcacggg cattgcgcat tcgccggatg ataccagcga
    11641 tttaatcgac atggtcggtg gtgcgccgct ggtggtcaag ttggttgaag gcacgcaggg
    11701 aattggcgtc gtgctggcgg agacgcgtca ggcggcggaa agcgtgattg acgctttccg
    11761 cggtctgaac gcgcatattc tggtgcagga atatatcaaa gaggcgcaag ggtgcgatat
    11821 ccgctgtctg gttgttggcg atgaagtggt cgctgcgatt gaacggcggg cgaaagaggg
    11881 cgattttcgt tccaatttgc atcgtggcgg cgcggcaagc gtcgccagta tcacaccaca
    11941 ggagcgtgaa atcgcgataa aagccgcgcg aacgatggcg ctggacgttg ctggtgtgga
    12001 tattctgcgt gctaatcgcg ggccgttggt gatggaagtg aatgcgtcgc cggggctgga
    12061 aggaatagaa aaaaccactg gtatcgacat cgcgggtaaa atgatccgct ggatcgaacg
    12121 ctacgctacg acagaatatt gcctgaaaac gggtggttag tcgcaatcac attactgatc
    12181 atggttttgc ctgcgctttt tgcgtaagct gtgccggtct ttttatcgaa agaggttgta
    12241 caaaattatg acatcgctgg tcgttcctgg tctggatacg ctgcgtcaat ggctcgatga
    12301 cctggggatg agtttttttg aatgtgataa ctgtcaggct ctgcatctgc cccatatgca
    12361 gaatttcgac ggtgtctttg atgccaaaat cgatctgatc gataacacga tcctgttttc
    12421 tgccatggcg gaagtccgac cttcagccgt attgccgctg gcggcggatt tatctgccat
    12481 caatgccagt tcgctgaccg tgaaagcatt tcttgatatg caggatgata atctgccaaa
    12541 gctggtggtt tgccagtctt tatccgttat gcagggcgta acctacgagc agtttgcatg
    12601 gtttgtgcgt cagagcgaag agcagatttc gatggtcatt cttgaagcta atgcccatca
    12661 actgctgtta ccgactgacg atgaagggca aaacaacgtt accgaaaact atttcctcca
    12721 ctgataactc ctttcgagca cgcagtcgct ggtgcagtga ctgcgcactg caaaattatc
    12781 tgctgttttt aaccttttct taaagattat ttcacttctc ttgtgccgat ttggctttat
    12841 cacatagagc aaatacgcat aacaatttgt taaataccgt tttttaatcc gagctatagt
    12901 ctcaaaccct ggctaaagtt attcttgcga tgcttttata tagcgagcag tgctggccgg
    12961 gagagagttc tcttttc
//
LOCUS       DADMHM010000116        12930 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.117, whole genome shotgun sequence.
ACCESSION   DADMHM010000116 DADMHM010000000
VERSION     DADMHM010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12930)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12930)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12930
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.117"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(81..632)
                     /locus_tag="JN125_002738"
     CDS             complement(81..632)
                     /locus_tag="JN125_002738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000996729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1440 domain-containing protein"
                     /protein_id="HAY8872472.1"
                     /translation="MAINGLFVRTDPQRRRYGVALLVGVLSGIISAFVKWGAEVPLPP
                     RTFSGGRDEFNPPYIFLRDYLGIDPTQTVYTFSEHIINPVMVTHIIFSLVFAIGYCIV
                     AEIFPKVKLWQGILAGLIVTVAVHGIFCPVLNLTPPLTQLPFDEYASEILGHIFWFWI
                     IEIMRRDLRNRITHEPDPEVAIR"
     gene            complement(729..1415)
                     /locus_tag="JN125_002739"
     CDS             complement(729..1415)
                     /locus_tag="JN125_002739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 4-epimerase UlaF"
                     /protein_id="HAY8872473.1"
                     /translation="MQKLKQQVFEANMDLPRYGLVTFTWGNVSAIDRERGLVVIKPSG
                     VAYETMKADDMVVVDMSGKVVEGKYRPSSDTATHLELYRRYPSLGGIVHTHSTHATAW
                     APAGLAIPALGTTHADYFFGDIPCTRGLSEEEVQGEYELNTGKVIIETLGDAEPLHTP
                     GIVVYQHGPFAWGKDAHDAVHNAVVMEEVAKMAWIARSINPQLNHIDSFLMNKHFMRK
                     HGPNAYYGQK"
     gene            complement(1415..2269)
                     /locus_tag="JN125_002740"
     CDS             complement(1415..2269)
                     /locus_tag="JN125_002740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ribulose-5-phosphate 3-epimerase UlaE"
                     /protein_id="HAY8872474.1"
                     /translation="MLSKQIPLGIYEKALPAGECWLERLRLAKTLGFDFVEMSVDETD
                     ERLSRLDWSREQRLALVNAIVETGVRVPSMCLSAHRRFPLGSEDDAVRAQGLEIMRKA
                     IQFAQDVGIRVIQLAGYDVYYQEANNETRRHFRDGLKESVEMASRAQVTLAMEIMDYP
                     LMNSISKALGYAHYLNNPWFQLYPDIGNLSAWDNDVQMELQAGIGHIVAVHVKDTKPG
                     VFKNVPFGEGVVDFERCFETLKQSGYCGPYLIEMWSETAEDPAAEVVKARDWVKARMA
                     KAGMVEAA"
     gene            complement(2279..2924)
                     /gene="ulaD"
                     /locus_tag="JN125_002741"
                     /pseudo
     CDS             complement(2279..2924)
                     /gene="ulaD"
                     /locus_tag="JN125_002741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313199.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="3-keto-L-gulonate-6-phosphate decarboxylase
                     UlaD"
     gene            complement(2938..3402)
                     /gene="ulaC"
                     /locus_tag="JN125_002742"
     CDS             complement(2938..3402)
                     /gene="ulaC"
                     /locus_tag="JN125_002742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIA"
                     /protein_id="HAY8872475.1"
                     /translation="MKLRDSLAENKSIRLQAEAETWQDAVKIGVDLLVAADVVEPRYY
                     QTILDAVEQHGPYFVLAPGLAMPHGRPEEGVKKTGFALVTLKKPLEFNHEDNDPVDIL
                     ITMAAVDANTHQEVGIMQIVNLFEDEENFDRLRACRTEQEVLDLIDRTNAAA"
     gene            complement(3412..3717)
                     /gene="ulaB"
                     /locus_tag="JN125_002743"
     CDS             complement(3412..3717)
                     /gene="ulaB"
                     /locus_tag="JN125_002743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710059.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIB"
                     /protein_id="HAY8872476.1"
                     /translation="MTVRILAVCGNGQGSSMIMKMKVDQFLTQSNIDHTVNSCAVGEY
                     KSELSGADIIIASTHIAGEITVTGNKYVVGVRNMLSPADFGPKLLEVIKAHFPQDVK"
     gene            complement(3733..5181)
                     /gene="ulaA"
                     /locus_tag="JN125_002744"
     CDS             complement(3733..5181)
                     /gene="ulaA"
                     /locus_tag="JN125_002744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005009981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIC"
                     /protein_id="HAY8872477.1"
                     /translation="MSAQHSGCAEYPVTSSSGDRLYNIFTVFFNQVMTNAPLLLGIVT
                     CLGYILLRKSVSVIIKGTIKTIIGFMLLQAGSGILTSTFKPVVAKMSEVYGINGAISD
                     TYASMMATIDRMGDAYSWVGYAVLLALALNICYVLLRRITGIRTIMLTGHIMFQQAGL
                     IAVTLFIFGYSMWTTIICTAILVSLYWGITSNMMYKPTQEVTDGCGFSIGHQQQFASW
                     IAYKVAPFLGKKEESVEDLKLPGWLNIFHDNIVSTAIVMTIFFGAILLSFGIDTVQAM
                     AGKVNWTVYILQTGFSFAVAIFIIIQGVRMFVAELSEAFNGISQRLIPGAVLAIDCAA
                     IYSFAPNAVVWGFMWGTIGQLIAVGILVACGSSILIIPGFIPMFFSNATIGVFANHFG
                     GWRAALKICLVMGMIEIFGCVWAVKLTGMSAWMGMADWSILAPPMMQGFFSIGIAFMA
                     VIIVIALAYMFFAGRALRAEEDAEKQLAEQSA"
     gene            5475..6539
                     /gene="ulaG"
                     /locus_tag="JN125_002745"
     CDS             5475..6539
                     /gene="ulaG"
                     /locus_tag="JN125_002745"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003856017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-ascorbate 6-phosphate lactonase"
                     /protein_id="HAY8872478.1"
                     /translation="MSKVKSITRESWILSTFPEWGSWLNEEIEQEQVAPGTFAMWWLG
                     CTGIWLKSEGGTNVCVDFWCGTGKQSHGNPLMKQGHQMQRMAGVKKLQPNLRTTPFVL
                     DPFAIRQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPKER
                     CIVVKPGDVVKVKDIEIHALDAFDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTPG
                     GSLYHSGDSHYSNYYAKHGNEHQIDVALGSYGENPRGITDKMTSADMLRMGEALNAKV
                     VIPFHHDIWSNFQAAPQEIRVLWEMKKDRLKYGFKPFIWQVGGKFTWPLDKDNLEYHY
                     PRGFDDCFTIEPDLPFKSFL"
     gene            6647..7402
                     /gene="ulaR"
                     /locus_tag="JN125_002746"
     CDS             6647..7402
                     /gene="ulaR"
                     /locus_tag="JN125_002746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator UlaR"
                     /protein_id="HAY8872479.1"
                     /translation="MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLD
                     ESGKLKKVRNGAEAITQQRPRWTPMNLHQAQNHDEKVRIAKAASQLVNPGESVVINCG
                     STAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSEN
                     SLYAGHWMFTSGKGLTAEGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLF
                     SRADQIDMLITGKNANPEILQQLEAQGVSILRV"
     gene            complement(7399..8148)
                     /gene="yjfP"
                     /locus_tag="JN125_002747"
     CDS             complement(7399..8148)
                     /gene="yjfP"
                     /locus_tag="JN125_002747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HAY8872480.1"
                     /translation="MIEIESRELADIPVLHAYPVGQKDTPLPCVIFYHGFTSSSLVYS
                     YFAVVLAQAGLRVIMPDAPDHGSRFSSDEARRLNQFWQILLQSMQEFTTLRAAIAEEN
                     WLLDDRLAVGGASMGAMTALGITARHPTVKCTASMMGSGYFTSLARSLFPPLIPETAA
                     QQNEFNNIIAPLAEWEATNHLEQLGDRPLLLWHGLEDDVVPADESLRLQQALSETGRD
                     KLLTCSWQPGVRHRITPEALDAAVTFFRQHL"
     gene            8330..8659
                     /gene="bsmA"
                     /locus_tag="JN125_002748"
     CDS             8330..8659
                     /gene="bsmA"
                     /locus_tag="JN125_002748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313192.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biofilm peroxide resistance protein BsmA"
                     /protein_id="HAY8872481.1"
                     /translation="MVSRKRNSVIYRFASLLLVLMLSACSALQGTPQPAPPVTNHPQE
                     IRRDQTQGLQRIGSVSTMVRGSPDDALAEIRAKAVAAKADYYVVVMVDETIVTGQWYS
                     QAILYRK"
     gene            8808..9083
                     /gene="yjfN"
                     /locus_tag="JN125_002749"
     CDS             8808..9083
                     /gene="yjfN"
                     /locus_tag="JN125_002749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418609.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease activator YjfN"
                     /protein_id="HAY8872482.1"
                     /translation="MKQLLASPSLQLVTYPASATAQSAEFASADCVTGLNEIGQISVS
                     NISGDPQDVERIVALKADEQGASWYRIITMYEDQQPDNWRVQAILYA"
     gene            complement(9200..10825)
                     /locus_tag="JN125_002750"
     CDS             complement(9200..10825)
                     /locus_tag="JN125_002750"
                     /EC_number="1.3.8.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418608.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isovaleryl-CoA dehydrogenase"
                     /protein_id="HAY8872483.1"
                     /translation="MHWQTHTVFNQPIPLNNSNLYLSDGALCEAVTREGAGWDSDFLA
                     SIGQQLGTAESLELGRLANVNPPELLRYDAQGRRLDDVRFHPAWHLLMQALCTNRVHN
                     LAWEEDARSGAFVARAARFMLHAQVEAGSLCPITMTFAATPLLLQMLPTPFQDWTTPL
                     LSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVGHKWFFS
                     VPQSDAHLVLAQTTGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCEVEFQDA
                     IGWLLGQEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFGNPLIQQ
                     PLMCHVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVICKRGMPF
                     VAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLNKQAGVYDLLS
                     EAFVEVKGQDRYFDRAVRRLQQQLRKPAEELGREITHQLFLLGCGAQMLKYASPPMAQ
                     AWCQVMLDTRGGVRLSEQIQNDLLLRATGGVCV"
     gene            complement(10909..11967)
                     /locus_tag="JN125_002751"
     CDS             complement(10909..11967)
                     /locus_tag="JN125_002751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HAY8872484.1"
                     /translation="MLRHNVPVRRDLDQIAANNGFDFHIIDNEIYWDESRAYRFTLRQ
                     IEEQIEKPTAELHQMCLEVVDRAVKDEEILTQLAIPPLYWDVIAESWRARDPSLYGRM
                     DFAWCGNAPVKLLEYNAIQERLISRFSELYSREPFYFCCCQDTDEDRSTVLYLQDCAQ
                     QAGQESRFIYIEDLGLGVGGVLTDLDDNVIQRAFKLYPLEWMMRDDNGPLLRKRREQW
                     VAPLWKSILSNKGLMPLLWRFFPGHPNLLASWFEGEKPQIAAGESYVRKPIYSREGGN
                     VTIFDGQNNVVDHADGDYADEPMIYQAFQPLPRFGDSYTLIGSWIVDDEACGMGIRED
                     NTLITKDTSRFVPHYIAG"
     gene            complement(11970..12608)
                     /locus_tag="JN125_002752"
     CDS             complement(11970..12608)
                     /locus_tag="JN125_002752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1190 domain-containing protein"
                     /protein_id="HAY8872485.1"
                     /translation="MARKRKSRNNSKIGHGAISRIGRPNNPFEPRRNRYAQKYLTLAL
                     MGGAAFFVLKGCGDSGDVDNDGDGTFYSTVQDCIDDGNNADICARGWNNAKAAFYADV
                     PKNMTQQNCQSKYENCYYDNVEQSWIPVVSGFLLSRVIRKDRDEPFVYNSGGSSFASR
                     PVWRNTSGDYSWRSGSGKKESYSSGGFTTKKASTVSRGGYGRSSSARGHWGG"
     gene            complement(12618..12899)
                     /locus_tag="JN125_002753"
     CDS             complement(12618..12899)
                     /locus_tag="JN125_002753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001737671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF350 domain-containing protein"
                     /protein_id="HAY8872486.1"
                     /translation="MKNNNTAVSLAFSGTLLGYVIPLSSAAINAVSIPDYFAWGGIAL
                     VIQLLVFAGVRLYMPALSEKIINHNTAAGMFMGTAALAGGIFNAACMTW"
BASE COUNT         3261 a         3541 c         3161 g         2967 t
ORIGIN      
        1 cgctagcacc aggtataacc aacgaaacat tgccatagtt tgctttgccc ccttcgcagg
       61 gggctttttt atacggttat tcaccggatt gcgacttccg gatctggctc atgagtaatg
      121 cgattacgta agtcgcggcg cataatttct attatccaga accagaaaat atgccccagg
      181 atttcagagg catattcgtc aaaaggcaat tgagtgagcg gcggcgttaa attcagcacc
      241 gggcaaaata taccgtggac tgccactgtc acaataagcc ctgctaatat cccctgccat
      301 aatttcactt tcgggaaaat ttccgcgaca atacaatacc ctatcgcaaa aaccagtgag
      361 aagatgatat gcgtcaccat caccgggttg ataatatgtt ccgagaatgt atacacagtt
      421 tgggttgggt cgatacctaa ataatcccgt agaaagatat acggcgggtt aaattcatcg
      481 cgaccaccgg aaaatgtgcg cggtggcaag gggacttccg ctccccattt aacaaatgct
      541 gaaataattc ctgaaagtac acccacaagt aacgcaacgc catagcggcg acgttgcgga
      601 tccgttctga caaacaatcc attgatagcc ataaaaacac ctgttgttta tacgattttt
      661 taactgaagc ggccccggaa tcagaccaat tacatcccgc aggaggtaat aattccgggg
      721 cgcactgctt acttctgccc gtaataggcg ttaggaccgt gcttacgcat gaagtgttta
      781 ttcatgagga agctgtcgat gtgattcagt tgtgggttaa tactgcgcgc aatccacgcc
      841 attttcgcca cttcttccat caccaccgcg ttatgcaccg cgtcgtgggc atctttcccc
      901 caggcgaacg gcccgtgctg atacaccaca attcccggcg tatgcagcgg ctcggcgtca
      961 cccagcgttt cgataatcac tttgccggtg ttcagttcat actcgccctg cacctcttct
     1021 tcgcttaatc cacgcgtaca cgggatgtcg ccaaagaagt agtcggcgtg cgtggtgcct
     1081 aacgccggga tcgccagccc cgccggcgcc catgcggtgg catgagtgga atgggtatgg
     1141 acaatgccgc cgagcgacgg gtaacgacgg tagagttcaa gatgcgtcgc ggtgtcagaa
     1201 gacgggcgat acttcccttc taccaccttg ccgctcatat cgaccaccac catatcgtct
     1261 gctttcatgg tttcgtaggc aacgccgctg ggcttgatca ccaccagccc gcgttcgcgg
     1321 tcgatagcgc tgacgttgcc ccaggtaaag gtcaccagcc catagcgcgg cagatccatg
     1381 ttggcttcaa acacctgctg ttttagcttt tgcattatgc cgcctccacc atgcctgctt
     1441 tggccatgcg cgctttcacc caatcacgcg ctttcaccac ttctgccgcc gggtcttccg
     1501 ccgtttcgct ccacatctca atcaggtacg gcccgcaata gccactctgt ttgagcgttt
     1561 cgaagcaacg ttcgaaatcc accacacctt cgccaaatgg cacgtttttg aagacgcccg
     1621 gtttggtgtc tttcacatgc accgcgacga tatgcccgat tccggcctgc aactccatct
     1681 gcacatcgtt gtcccacgcc gacaggttgc cgatatctgg gtagagctgg aaccacgggt
     1741 tgttgagata gtgcgcgtaa cccagcgcct tgctgatgga gttcatcaac ggataatcca
     1801 tgatctccat cgccagcgtc acctgcgcgc ggctcgccat ctcaacgctc tctttcaggc
     1861 cgtcacggaa atgacgacgc gtttcgttat tggcttcctg atagtaaacg tcatagcccg
     1921 ccagctggat cacgcgaatg ccaacgtcct gggcgaactg gatggcttta cgcataatct
     1981 ccagcccctg cgcccgcacc gcgtcatctt cgctgcccaa cgggaaacga cgatgggcag
     2041 aaaggcacat ggacggcaca cgcacgccgg tttcaacaat cgcattcacc agcgccagac
     2101 gctgctcgcg gctccagtcg aggcgcgaca ggcgctcgtc agtttcatct accgacatct
     2161 cgacaaaatc gaagcccaac gtttttgcca gtcgcaggcg ttccagccag cactccccgg
     2221 cggggagcgc tttttcatag atgccaagcg ggatttgttt ggacaacata tccgctcctt
     2281 agccccacag ttcggcgatg gaacgtttga actgacgcgc ggcttcaacc ggagaagcgg
     2341 catcacggat gctgcgaccg gcgataaaca catgaattgg aatgcctttg aacagcggca
     2401 gatcttccag caccaggcca ccggtgacgg tgactttgaa gcccatatcg gaaagacgtt
     2461 tgatcgcagt gatatcggct tcaccccacg ccagcggcct gcgcgtcacg gctgcggtga
     2521 taaaccacct gctgaatacc tgcgtcgcgc cactgttgcg cctgttccca ggtccagtaa
     2581 ccggtcagtt cgatctgcac gtcgccgtta aactcttttg ctacgtccag cgcacctttg
     2641 gcggtgttga tatccgcaca acaaatcacg gtcacccagt cagcgttggc ttcgaagcac
     2701 atacgagaaa gaattttgcc cgcatcggca attttggcgt ctgccagcac gattttgtgc
     2761 gggtagagcg ctttcagatc gcgaaccgca cgcacgcctt cgcccacgca cagaatggta
     2821 cccacttcga taatgtcgac ttcttcggca atcaggcgag tggtttcgta ggcgctatcc
     2881 atagtctggt tgtccagcgc gacttgcaac atcggtaatg acatcttcaa ttccttctta
     2941 agctgccgcg ttggtgcggt caatgagatc cagtacttcc tgctcggtac ggcaggcacg
     3001 taaacggtcg aaattttctt catcttcaaa caggttgacg atctgcatga tgcccacttc
     3061 ctggtgcgtg ttggcatcga ccgccgccat ggtgatgagg atatccaccg ggtcgttatc
     3121 ttcgtggttg aactccagcg gctttttcag cgtcaccagc gcaaaaccgg ttttcttaac
     3181 gccctcttcc gggcgaccgt gcggcattgc caggcctggt gcgagcacaa agtacggacc
     3241 gtgctgttca accgcatcca gaatcgtctg gtagtaacgc ggctcgacaa catccgccgc
     3301 caccagcagg tcaacgccga tttttactgc gtcctgccat gtctcagctt cagcctgcag
     3361 gcggatggat ttattctccg ccagcgaatc acgtaatttc atggcgcgtc cttacttcac
     3421 atcctgcggg aaatgcgctt tgatcacttc cagcagtttc gggccaaagt cggcaggaga
     3481 gagcatgttg cgcacgccaa ccacgtattt gttgccggtc acggtgattt cgcccgcaat
     3541 gtgcgtagaa gcgatgatga tatccgcgcc gctcaactcg cttttgtatt cgccaaccgc
     3601 gcagctattt accgtgtggt caatgtttga ttgggttaaa aactggtcca ctttcatctt
     3661 catgatcatg gaactgcctt gtccgttgcc acacacagcc agaatacgta cggtcataat
     3721 caaaactcct tattaagcag actgttctgc cagttgtttt tctgcatctt cttctgcgcg
     3781 cagtgcgcgg ccagcgaaga acatataagc cagtgcaatt acaatgatga cggccataaa
     3841 ggcgataccg atggagaaga agccctgcat catcggcggt gccagaatcg accagtccgc
     3901 catgcccatc caggcgctca taccggtgag tttcaccgcc cagacgcagc caaagatttc
     3961 aatcatcccc atcaccagac atatcttcag cgccgcacgc cagccgccga agtggttagc
     4021 gaacacgccg atggtggcgt tggagaagaa catcgggata aagccgggaa taatcaggat
     4081 cgaggaaccg caggcgacca ggatgccaac cgcaatcagc tgaccgatgg tgccccacat
     4141 aaagccccaa accacggcgt tcggcgcgaa gctatagata gccgcacagt caatcgccag
     4201 aaccgcacca gggatcaggc gctgggagat accgttaaat gcttcagaga gttccgccac
     4261 aaacatgcgc acgccctgaa tgatgatgaa gatcgccacc gcgaaggaga aaccagtttg
     4321 caggatgtac accgtccagt tcactttgcc tgccatcgcc tgcacggtgt cgataccgaa
     4381 ggagagcaga atggcaccaa agaagatggt catcacaatc gccgtggaga cgatgttgtc
     4441 gtggaaaata ttcagccagc ctggcagttt gaggtcttca acgctttcct cttttttgcc
     4501 gaggaacggc gcaactttat aggcaatcca tgatgcaaac tgttgctggt gaccgatgga
     4561 gaaaccgcag ccgtccgtca cttcctgagt cggcttgtac atcatgttgg aggtaatgcc
     4621 ccagtagagc gaaaccagaa tcgccgtgca gataatggtt gtccacatgg agtagccgaa
     4681 aataaacaac gtaacggcaa tcagccccgc ctgctggaac atgatatgac cagtcagcat
     4741 gatggtacga ataccggtaa tgcgacgcag cagcacgtaa cagatgttca gcgccagcgc
     4801 taacaacacc gcgtaaccta cccagctata ggcatcgccc atgcggtcga tggttgccat
     4861 catcgacgcg taagtatcgg aaattgcgcc gttaatgccg tagacttcgg acattttcgc
     4921 caccaccggt ttgaaggtgc tggtgaggat gccggaccct gcctgcaaca acatgaaacc
     4981 aattatggtt ttaatcgtgc ctttaataat aacgctgaca cttttgcgca gtaggatgta
     5041 gcccagacag gtcacaatac ccagcaacaa cggggcattg gtcatgacct ggttaaaaaa
     5101 cacggtaaag atgttgtaga gacgatctcc tgaagaagag gtaaccgggt attccgcaca
     5161 cccggaatgt tgtgcactca ctataatttt caaaagtaat cacaataaga ttatttatga
     5221 ttaaatgtgg cgcgacccgt aaataattcc atacggatag agttggattc acacaacgaa
     5281 acaattattt atttaaattc atttagttaa tttaactaca cattccatta aatctttcca
     5341 tactcaaaat caacaacaac ttccctggca aaaagtcaaa aaatggtcat tgccttcctg
     5401 aaaaaatagt gtcaggatta atcaaaacca atcacatatt gattcgaatt gaactatcat
     5461 gaaggtaaat ggcgatgagt aaagtgaaaa gtatcacccg agaatcctgg atcctgagca
     5521 ctttcccgga gtggggtagc tggctgaatg aagaaattga acaagagcag gtcgcccctg
     5581 gcacatttgc gatgtggtgg ctaggctgca ccgggatctg gttgaaatca gaaggtggca
     5641 ccaacgtttg cgttgatttc tggtgcggca ctggcaaaca aagtcacggt aacccgttaa
     5701 tgaaacaggg tcaccagatg cagcgcatgg ctggcgtgaa aaaactgcag ccaaacctac
     5761 gcaccacccc gtttgttctt gatccgtttg cgattcgcca gatcgacgcg gtactggcga
     5821 ctcacgatca caacgatcat atcgacgtta acgtcgctgc tgccgtgatg cagaactgtg
     5881 ctgatgacgt accattcatt ggaccgaaaa cctgcgttga tttgtggatt ggctggggcg
     5941 taccgaaaga gcgttgcatc gtggtcaaac cgggcgatgt ggtgaaagtg aaagacattg
     6001 aaattcatgc gcttgatgct ttcgaccgta ctgcactgat caccctgcct gccgatcaaa
     6061 aagcggctgg cgtactgccg gacggcatgg acgatcgcgc ggtgaactat ctgttcaaaa
     6121 cgcctggcgg ctccctgtat cacagcggcg actcccacta ctctaactat tatgcgaagc
     6181 acggtaacga acatcagatc gacgtggctt taggttcata cggcgaaaac ccgcgcggta
     6241 tcaccgacaa aatgaccagc gccgatatgc tgcgtatggg tgaagccctg aatgcgaaag
     6301 tggttatccc gttccaccac gatatctggt caaacttcca ggccgctccg caagagatcc
     6361 gcgtgctgtg ggagatgaaa aaagatcgtc tgaagtatgg cttcaagccg tttatctggc
     6421 aggttggcgg caaatttacc tggccactgg ataaagacaa cctcgagtac cactatccgc
     6481 gcggtttcga tgattgcttc actattgaac cggatctgcc gttcaagtca ttcctgtaat
     6541 ctgtcgttta taccggatag cgtggagaag ttcgcgctat ccggcgtagt atttcctggc
     6601 tatttcaaat atcatctaaa aaaatcaaat tttatcggaa tagctcatga ctgaagcaca
     6661 aagacatcaa atcctcctgg aaatgctcgc acaattgggc tttgtgaccg ttgagaaagt
     6721 cgttgagcgt ctgggaattt cgcctgccac tgcgcgacgc gatatcaata aacttgacga
     6781 aagcggcaaa ctcaaaaagg tgcgcaatgg cgcagaagct attacccaac agcgcccgcg
     6841 ctggacgccg atgaatctgc atcaggcgca gaatcacgat gaaaaagtac gtattgctaa
     6901 agcggcctcg cagctggtta atccgggcga aagcgtagtc atcaactgcg gctccaccgc
     6961 gtttctgctt gggcgggaaa tgtgtggcaa gccagtgcaa atcatcacta attatctacc
     7021 gctggcaaat tacctgatcg atcaagaaca tgacagcgtg atcattatgg gtggacagta
     7081 caacaaaagt cagtccatca ctttaagccc gcagggcagc gaaaacagtc tctatgccgg
     7141 gcactggatg tttaccagcg gaaaagggct gaccgcagaa gggttgtata aaaccgatat
     7201 gctgacagca atggcagagc agaagatgct gagcgtggta gggaaactgg tggtactggt
     7261 tgatagcagt aagattggcg aacgcgcggg aatgcttttt agccgtgccg atcaaatcga
     7321 tatgcttatc accggcaaaa atgctaaccc ggaaatcctg caacaactgg aagcgcaagg
     7381 ggtcagcatt ctgcgtgttt aaagatgctg gcggaaaaat gtcacggcag catctaacgc
     7441 ctcaggcgta atgcggtgac gcacgcctgg ctgccatgaa caggttagca gtttatcccg
     7501 tcccgtctcg cttaaggcct gctgcaaacg tagtgattcg tcggcaggca caacgtcatc
     7561 ctcgaggcca tgccacagca gtagaggtct gtccccaagt tgttccaggt ggtttgtcgc
     7621 ttcccactct gccagcggcg cgataatgtt attgaattca ttctgctgtg ctgccgtttc
     7681 aggtatcagc ggtggaaaca gtgaacgggc gagcgatgta aaatagcccg atcccatcat
     7741 gctggcggta catttcaccg tggggtggcg agcggtaatt cccagtgccg tcatcgcgcc
     7801 catcgacgcg ccaccgactg ccagacggtc atcaagcagc cagttttctt cggctattgc
     7861 cgcacgtaaa gtagtgaatt cctgcatact ttgtagcaag atttgccaga attgatttaa
     7921 ccgccgcgct tcgtcgctac taaaacggct accgtgatcg ggcgcatccg gcatgatcac
     7981 ccgcaaacca gcctgcgcca gcacaacggc aaaatagcta tacaccaggc tggatgaagt
     8041 aaagccgtga taaaaaatta cgcacggtaa cggggtatct ttttgcccga caggataagc
     8101 atgaagaacg ggaatatctg ccagctcgcg tgattctatt tcaatcatct gtctctcctt
     8161 tttgtctggt atgacatgaa gaaatcctta gcacaagttt ctgctggcgg tattagttca
     8221 taatgttgag atgtgggtta cgctttcgtc acgttttcat tcgaaaatcg cgtaccaggt
     8281 aacaattcgg gaacattccc ccaaagttaa attaataagg cactacacta tggttagcag
     8341 gaaacgtaat agcgttattt accggtttgc cagtttatta ttggtgttga tgttaagtgc
     8401 ctgtagcgca ctgcaaggta cgccacagcc agcaccgcca gtaacgaacc atccgcaaga
     8461 gattcgccgc gaccagacgc aagggttaca gcgaataggt agcgttagca cgatggttcg
     8521 gggttctccg gatgacgcat tagcagaaat cagagcaaaa gctgtcgctg caaaagctga
     8581 ttattacgtt gtcgtcatgg tggacgaaac catcgtgaca ggacagtggt attcacaagc
     8641 cattttgtac cgtaaataaa tcagacaact tacatagtca gctttacatt gctttgcgtc
     8701 cctatgcgtt tacctgtgca caataaatta ccggctggaa gcctgggcgt ttattaccgc
     8761 gatggaatgc cctgcaacat gtggggaaac gaaaaatgga gctgacgatg aaacaattac
     8821 ttgcttcacc ctcgctgcaa ttagtgactt atcctgcgag cgccacggca cagtctgcag
     8881 aattcgccag tgctgactgc gtgacgggcc tgaatgaaat aggtcagatc tcagttagca
     8941 atatttcagg ggatccgcag gacgtggaac gtatcgtggc gttaaaggcc gatgaacaag
     9001 gtgcgtcatg gtaccgcatt attaccatgt acgaagacca gcagcctgat aactggcgcg
     9061 tacaggcgat actgtatgca tgagtgtcat ctacagcaaa tgaacaatgc cggattcggc
     9121 gcgagcgcct tgtccggcct acaattttca catatttcat tgagttaatc gaaaccagcg
     9181 tcgcatcagt cgtatacgct tacacacaca ctccccccgt cgcccgcagc aataaatcat
     9241 tctggatctg ctctgacaac cgtacgccgc cgcgcgtatc taacatcacc tgacaccacg
     9301 cctgcgccat tggcggagaa gcatatttca acatttgcgc accgcagccc agcaggaata
     9361 gctgatgagt aatctctcgc cccagttctt cagctggctt acgcagctgc tgctgtaaac
     9421 gacgaaccgc gcgatcaaaa tagcgatcct gccctttcac ttccacaaat gcttccgaca
     9481 ataagtcgta tacgcccgct tgcttattga gaacgcgcaa cacatccagg cacataatat
     9541 tgccggaacc ttcccaaata ctgtttaccg gcatctcccg gtaaagccgc ggcagctcgc
     9601 tctcctcgca ataaccaatg ccgcccagca cctccatcgc ttcggccaca aacggcatac
     9661 ctcttttgca gatcacaaat tttgccgcag gcgtaaataa acgcgcccac agggcttctt
     9721 tggcatcggc acgccggtcc cacgctcgcg caagacgaaa cagcaacgcc gtttgccctt
     9781 caagctgaag tgccatgcga cttaagacat gacacataag gggctgttgg atcaatggat
     9841 taccaaaaac atggcgttga tgtgcatgat aaatcgccag cgaaaatgca cggcgcatca
     9901 tggcatggct acccagggcg caatcaaaac gcgtcatccc acccattttc aggatcagac
     9961 gaattccttc cccttcctgc cccaacaacc agccaatggc atcctgaaac tccacttcgc
    10021 aactggcgtt agagcgatta cccagcttat ctttcagccg ctcgaggcga atcgcgttgc
    10081 gttgcccatc aggcaaaaag cgcggcacaa aaaagcagga caaaccgccc gtagtctgcg
    10141 ccagcaccag atgcgcatcg ctttgcggca ccgagaaaaa ccatttatgc cccaccagcc
    10201 gataagagcc atcttccaga cgctctgcac gggtggtgtt gctcatgaca tcggaaccgc
    10261 cctgcttttc cgtcattccc atgccaatca acaaaccgcg tttttgccca cctggcaata
    10321 agtgagaatc gtagcgatcg ctcagcagcg gcgtggtcca gtcctgaaac ggcgtgggta
    10381 acatctgtaa caacaatggc gtggcggcaa aggtcatcgt tattggacat aacgacccag
    10441 cctcaacctg cgcatgtaac ataaaacgcg ccgcgcgcgc cacaaatgcg ccggagcgag
    10501 cgtcttcttc ccaggcaaga ttgtgcaccc gattggtaca taacgcctgc atcagcaggt
    10561 gccaggcggg gtgaaaacgc acatcgtcca gacggcgtcc ttgcgcatcg tagcgcaata
    10621 attcaggcgg attcacattc gccagccgcc ccagttcaag agattcagcc gttcctaact
    10681 gctgaccaat actggctaga aaatcgctat cccagccagc accttcacgc gttaccgctt
    10741 cacagagcgc gccatcagac aggtataagt tgctgttatt taatggtata ggttgattaa
    10801 aaacggtgtg agtttgccag tgcactgtgt ctccctccat caatggcagt cacccttagt
    10861 atggtcactg ccatggattc ctgacagaaa gagattgcta aaacattctt atccagcaat
    10921 gtaatgcgga acgaaacgtg aggtgtcttt ggtgatcagc gtgttatctt cacggatccc
    10981 cattccgcac gcttcatcat cgacaatcca gctaccgatg agtgtgtagc tatcgccaaa
    11041 tcgcggcaga ggttgaaacg cctggtagat catcggttca tcggcgtaat caccatcagc
    11101 gtggtcaacg acgttattct gaccgtcgaa aatggtgacg tttccgcctt cgcgtgagta
    11161 gatcggttta cgcacatagc tttcgccagc ggcaatctgc ggtttttcgc cctcaaacca
    11221 ggatgcaaga aggttaggat gaccaggaaa gaagcgccaa agcagcggca ttagcccttt
    11281 attactcaag atacttttcc ataacggcgc cacccattgc tcgcgacgct tgcgcagcag
    11341 cggaccgtta tcgtcacgca tcatccactc cagcggatac agcttaaatg cacgctggat
    11401 gacattatca tcaagatcgg tcagtacgcc gccgacgccc aaaccgagat cttcaatgta
    11461 gataaaccgc gactcctgcc ctgcctgctg ggcgcagtcc tgcaagtaca gcacggtact
    11521 cctgtcttca tcggtgtcct gacagcagca aaaataaaac ggttcccgac tgtaaagctc
    11581 actaaagcgc gaaatcaggc gttcctgaat ggcgttgtac tccagcagct tcaccggcgc
    11641 attgccacac caggcaaaat ccatccggcc atacagcgaa ggatcgcgtg cgcgccagct
    11701 ttcggcgatc acatcccagt acaacggcgg gatcgccagt tgcgtcagga tctcttcgtc
    11761 tttaaccgcg cgatccacca cctcaaggca catctgatgc agttccgcag tcggtttttc
    11821 gatctgctct tcaatctggc gcagagtaaa acggtaagcc cgactctcgt cccaatagat
    11881 ttcattgtcg atgatatgaa agtcgaaacc gttgttagcg gcgatctggt ccagatcccg
    11941 tcgcacagga acgttgtgtc tcagcatgat tagcctcccc aatgcccacg ggcgctggaa
    12001 gaacgaccat agccgccgcg cgaaacggtt gacgcttttt tggtggtaaa gccgcctgaa
    12061 gagtaagact cttttttgcc agaaccggag cgccaggagt aatcaccgga agtgttgcgc
    12121 cagacggggc gggaagcaaa tgaggatccg ccgctgttat agacgaacgg ctcatcgcga
    12181 tctttacgaa taacccggct taacaaaaat ccagaaacga ccgggatcca actctgttca
    12241 acattgtcgt agtagcaatt ttcgtactta gactgacaat tctgctgagt catattcttc
    12301 ggaacatcgg cataaaatgc cgctttggcg ttgttccagc cacgcgcgca aatgtcggca
    12361 ttattaccgt catcaataca atcctgcact gtcgaataaa acgttccgtc gccgtcgtta
    12421 tcgacatcgc cactatcgcc acaacctttc aatacaaaaa aagcggcacc gcccattagc
    12481 gccaacgtta agtatttttg tgcgtagcga ttgcgacgcg gttcaaaagg attattcggt
    12541 ctaccaatgc gactgatcgc tccgtgacca attttactgt tatttcttga tttgcgtttt
    12601 ctggccatga tcgtccatta ccatgtcata caagctgcgt taaaaatacc gccagccagc
    12661 gcggcggttc ccataaacat tcctgctgcg gtattgtgat taataatttt ttcgcttaat
    12721 gcgggcatat aaagtctgac accagcaaaa acgagtaact gaatcaccag tgcaatcccg
    12781 ccccaggcga aatagtctgg aatactcacc gcattgattg ccgcactgga taaggggatc
    12841 acgtaaccca acaatgtacc gctgaatgcc agtgacaccg cggtattatt gtttttgatt
    12901 aattgccatt cgttgtgcgg gtaatgactc
//
LOCUS       DADMHM010000117        12908 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.118, whole genome shotgun sequence.
ACCESSION   DADMHM010000117 DADMHM010000000
VERSION     DADMHM010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12908)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12908)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12908
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.118"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..909)
                     /locus_tag="JN125_002754"
     CDS             complement(<1..909)
                     /locus_tag="JN125_002754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017441594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rpn family recombination-promoting
                     nuclease/putative transposase"
                     /protein_id="HAY8872487.1"
                     /translation="MTNFTTSTPHDALFKSFLTHPDTARDFMEIHIPKDLRELCDLDS
                     LKLESASFVDEKLRVLHSDILWSVKTREGDGYIYVVIEHQSREDIHMAFRLMRYSMAV
                     MQRHIEHDKRRPLPLVIPMLFYHGSRSPYPWSLCWLDEFAAPTTARKLYSAAFPLVDV
                     TVVPDDEIVQHRRIALLELIQKHIRQRDLMGLIDQLVVLLVTECANDSQITALLNYIL
                     LTGDEARFKAFISELTRRMPHHRERIMTIAERIHNDGWLLGRERGRKEGKVEGERSLL
                     RLLLQNGADPEWIQRYTGLSAEQMQAL"
     gene            1376..2608
                     /gene="mdtM"
                     /locus_tag="JN125_002755"
     CDS             1376..2608
                     /gene="mdtM"
                     /locus_tag="JN125_002755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtM"
                     /protein_id="HAY8872488.1"
                     /translation="MPRFFARHAATLFFPMALILYDFAAYLSTDLIQPGIINVVRDFN
                     ADVSLAPAAVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATMFTTSMT
                     QFLIARAIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLIAPIIGPLSGAAL
                     MHFVHWKVLFAIIAVMGFISFVGLLLAMPETVKRGAVPFSAKSVFRDFRNVFCNRLFL
                     FGAATISLSYIPMMSWVAVSPVILIDAGSLTTSQFAWTQVPVFGAVIVANAIVARFVK
                     DPTEPRFIWRAVPIQLVGLALLIIGNLLSPHVWLWSVLGTSLYAFGIGLIFPTLFRFT
                     LFSNNLPKGTVSASLNMVILMVMSVSVEIGRWLWFNGGRLPFHLLAVVAGVIVVFTLA
                     GLLNRVRQHQAAELAEER"
     gene            2649..3929
                     /locus_tag="JN125_002756"
     CDS             2649..3929
                     /locus_tag="JN125_002756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF445 domain-containing protein"
                     /protein_id="HAY8872489.1"
                     /translation="MNKLIELRRAKMLALSLLLIAAATFVVTLFLPPNFWVSGVKAIA
                     EAAMVGALADWFAVVALFRRVPIPIISRHTAIIPRNKDRIGENLGQFVQEKFLDTQSL
                     VALIRRHEPALLIGNWFSQPENARRVGQHLLQIMSGFLELTDDARIQRLLKRAVHRAI
                     DKVDLSGTSALMLESMTKNDRHQVLLDTLIAQLIALLQRDKSRKFIAQQIVRWLESEH
                     PLKAKILPTEWLGEHSAELVSDAVNSLLDDISRDRAHQIRHAFDRATFALIDKLKNDP
                     EMAARADAVKSYLKEDEAFNRYLSELWGDLREWLKADINSEDSRVKERIARAGQWFGE
                     TLIADDALRASLNGHLEQAAHRVAPEFSAFLTRHISDTVKSWDARDMSRQIELNIGKD
                     LQFIRVNGTLVGGCIGLILYLLSQLPALFPLSNF"
     gene            4045..5197
                     /locus_tag="JN125_002757"
                     /pseudo
     CDS             4045..5197
                     /locus_tag="JN125_002757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418755.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacyl-CoA dehydratase subunit D"
     gene            5207..5974
                     /locus_tag="JN125_002758"
     CDS             5207..5974
                     /locus_tag="JN125_002758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872490.1"
                     /translation="MTYSIGIDSGSTATKGILLADGVITRRFLVPTPFRPATAITEAW
                     ETLREGLETTPFLTLTGYGRQLVDFADKQVTEISCHGLGARFLAPATRAVIDIGGQDS
                     KVIQLDDDGNLCDFLMNDKCAAGTGRFLEVISRTLGTSVEQLDSITENVTPHAITSMC
                     TVFAESEVISLRSAGVAPEAILAGVINAMARRSANFIARLSCEAPILFTGGVSHCQTF
                     ARMLESHLGMPVNTHPDAQFAGAIGAAVIGQRVRTRR"
     gene            5971..6228
                     /locus_tag="JN125_002759"
     CDS             5971..6228
                     /locus_tag="JN125_002759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3343 domain-containing protein"
                     /protein_id="HAY8872491.1"
                     /translation="MKEFLFLFHSTVGVIQTRKALQAAGMTFRVSDIPRDLRGGCGLC
                     IWLTCPPGEEIQWVIPGLTESIYCQQDGVWRCIAHYRVSPR"
     gene            6182..7153
                     /locus_tag="JN125_002760"
     CDS             6182..7153
                     /locus_tag="JN125_002760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000225344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjiK family protein"
                     /protein_id="HAY8872492.1"
                     /translation="MVSGAALHITGFLRVKDSLRSLRILLDILLICLKGITVTKSISL
                     SKRISVIVILFAIVAVCTFFVQSCARKSNHAASFQNYHATIDGKEIAGITNNISSLTW
                     SAQSNTLFSTINKPAAIVEMTTNGDFIRTILLDFVKDLETIEYIGDNQFVISDERDYA
                     IYVISLTPNSEVKILKKIKIPLQDSPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN
                     GLLSSNELHISKDEALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVIG
                     EISLTKGSRGLSHNIKQAEGIAMDASGNIYIVSEPNRFYRFTPKSSH"
     gene            7221..8399
                     /locus_tag="JN125_002761"
     CDS             7221..8399
                     /locus_tag="JN125_002761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8872493.1"
                     /translation="MPSSSHPVERFSFSTALFGMLVLTLGMGLGRFLYTPMLPVIMAE
                     GAFSFSQLSWIASGNYAGYLAGSLLFSFGAFHQPSRLRPFLLVSALASGLLILAMAWL
                     PPFILVLLIRFLAGVASAGMLIFGSTLIMQHTRHPFVLAALFSGVGIGIALGNEYVLA
                     GLHFAFSSQTLWQGAGALSGMMLIALTLLMPSKKHAIAPMPLAKTEQQIMSWWLLAIL
                     YGLAGFGYIIVATYLPLMAKDAGSPLLTAHLWTLVGLSIVPGCFGWLWAAKRWGALPC
                     LTANLLVQAISVLLTLASDSPLLLIISSIGFGGTFMGTTSLVMTIARQLSVPGNLNLL
                     GFVTLIYGIGQILGPALTSMLGNGTSALAGATLCGAAALFIAALISTVQLFKLQVVTS
                     "
     gene            complement(8412..9068)
                     /gene="kptA"
                     /locus_tag="JN125_002762"
     CDS             complement(8412..9068)
                     /gene="kptA"
                     /locus_tag="JN125_002762"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709901.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2'-phosphotransferase"
                     /protein_id="HAY8872494.1"
                     /translation="MWKRFCAGLSCRKFINPVTMTLVNKNRKSRDENEMAKHNEKELA
                     DTSKFLSFVLRHKPEAIGIVLDREGWADIDKLILCAQKAGKRLTRALLDTVVATSDKK
                     RFSYSSDGRCIRAVQGHSTSQVAISFAEKTPPQFLYHGTASRFLDEIKKQGLIAGDRH
                     YVHLSADEATARKVGARHGSPVVLTVKAQEMAKRGIPFWQAENGVWLTSTVAVEFLEW
                     "
     gene            9216..9899
                     /locus_tag="JN125_002763"
     CDS             9216..9899
                     /locus_tag="JN125_002763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418750.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872495.1"
                     /translation="MTQQGDAVAGELATEKVGIKGYLAFFLTIIFFSGVFSGTDSWWR
                     VFDFSVLNGSFGQLPGANGATTSFRGAGGAGAKDGFLFALELAPSVILSLGIISITDG
                     LGGLRAAQQLMTPVLKPLLGIPGICSLALIANLQNTDAAAGMTKELAQEGEITERDKV
                     IFAAYQTSGSAIITNYFSSGVAVFAFLGTSVIVPLAVILVFKFVGANILRVWLNFEER
                     RNPTQGAQA"
     gene            9896..10293
                     /locus_tag="JN125_002764"
                     /pseudo
     CDS             9896..10293
                     /locus_tag="JN125_002764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313314.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            10306..11478
                     /gene="iadA"
                     /locus_tag="JN125_002765"
     CDS             10306..11478
                     /gene="iadA"
                     /locus_tag="JN125_002765"
                     /EC_number="3.4.19.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-aspartyl-peptidase"
                     /protein_id="HAY8872496.1"
                     /translation="MIDYTAAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPS
                     DIVPNCTVVDLSGQILCPGFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVG
                     LLGTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPSRTITGSVEKDVAIIDRVIG
                     VKCAISDHRSAAPDVYHLANMAAESRVGGLLGSKPGVTVFHMGDSKKALQPIYDLLEN
                     CDVPISKLLPTHVNRNVPLFEQALEFARKGGTIDITSSIDEPVAPAEGIARAVQAGIP
                     LARVTLSSDGNGSQPFFDDEGNLTHIGVAGFETLLETVQVLVKDYDFSISDALRPLTS
                     SVAGFLNLSGKGEILLGNDADLLVMTPELRIEQVYARGKLMVKDGKACVKGTFETA"
     gene            11543..12454
                     /gene="hypT"
                     /locus_tag="JN125_002766"
                     /gene_synonym="qseD"
     CDS             11543..12454
                     /gene="hypT"
                     /locus_tag="JN125_002766"
                     /gene_synonym="qseD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypochlorite stress DNA-binding transcriptional
                     regulator HypT"
                     /protein_id="HAY8872497.1"
                     /translation="MDDCGAVLHNIETKWLYDFLTLEKCRNFSQAAVSRNVSQPAFSR
                     RIRALEQAIGVELFNRQVTPLQLSEQGKIFHSQIRHLLQQLESNLAELRGGSDYAQRK
                     IKIAAAHSLSLGLLPSIISQMPPLFTWAIEAIDVDEAVDKLREGQSDCIFSFHDEDLL
                     EAPFDHIRLFESQLFPVCASDEYGEAIFNLAQPHFPLLNYSRNSYMGRLINRTLTRHS
                     ELSFSTFFVSSMSELLKQVALDGCGIAWLPEYAIQQEIRSGQLVVLNRDELVIPIQAY
                     AYRMNTRMNPVAERFWRELRELEIVLS"
     gene            complement(12447..12839)
                     /gene="iraD"
                     /locus_tag="JN125_002767"
     CDS             complement(12447..12839)
                     /gene="iraD"
                     /locus_tag="JN125_002767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313312.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-adapter protein IraD"
                     /protein_id="HAY8872498.1"
                     /translation="MMRQSLQAVLPEISGNKTSLLRKSVCSDLLTLFNSPHSALPSLL
                     VSGMPEWQVHNPSDKHLQSWYCRQLRSALLFHEPRIAALQVNLKEAYCHTLAISLEIM
                     LYHDDEPLTFDLVWDNGGWRSATLENVS"
     gene            complement(12836..>12908)
                     /locus_tag="JN125_002768"
     CDS             complement(12836..>12908)
                     /locus_tag="JN125_002768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872499.1"
                     /translation="HQYSGARCSGQAAYVAKRQECAK"
BASE COUNT         2880 a         3294 c         3335 g         3399 t
ORIGIN      
        1 taatgcctgc atttgctctg ccgaaagtcc ggtatatcgt tgtatccatt caggatcggc
       61 cccattctgc aacaacaatc ggaggaggct ccgttcccct tctactttcc cttctttcct
      121 ccccctctcc cttcccaaca gccatccatc attatgaatt cgctctgcaa ttgtcattat
      181 tcgctccctg tggtgtggca ttcgcctggt aagttcgctg ataaacgcct taaaacgcgc
      241 ttcatcgcca gtcagtaaaa tgtaatttaa cagcgcagtt atctggctgt cattagcaca
      301 ctctgtaacc agtaatacta ccagttggtc aataagcccc atcaaatcgc gctggcgaat
      361 atgcttttgg atcaactcca acagggcgat tctgcgatgc tgcacaatct cgtcgtctgg
      421 cacgacagtg acatccacca gcgggaacgc tgcgctataa agtttccgtg cggtagtcgg
      481 ggcggcaaat tcgtccagcc agcacaggga ccaggggtaa ggactacggc taccgtgata
      541 aaacagcatc gggataacca gcggtagcgg ccggcgttta tcatgctcga tatggcgctg
      601 catcaccgcc atggaatatc gcatcaggcg aaatgccata tgaatatcct cgcggctctg
      661 atgttcaatc actacgtaaa tataaccatc accttcacgg gtctttaccg accacagaat
      721 atcggagtgt agcacccgca atttttcatc gacaaagctg gcggattcca gttttaagct
      781 gtcgagatcg cacagttcac gtaaatcttt gggtatgtgg atctccataa aatcccgcgc
      841 ggtgtcaggg tgagtgagaa aggatttaaa taatgcgtca tgtggcgtgc tggtcgtgaa
      901 gtttgtcatg gcgatccgtc acctgtagat aagatggccc gactttagcg actaacaaaa
      961 ccattctcac ccggcaattt ctcgttcccc gaggtgcttt ccaggcgtct gcaaacgata
     1021 catttttccg gaaacaggct cgcgttttac atttcctgta cccggcagat attccccttt
     1081 ccaccgcgct cttttgatta accgcaaatt ttaattacac ttaaggtgta tattttctat
     1141 gcaacccatc aattaaagag gtgtaatgtg ctgatgacta tttgtaatcg ttatacattc
     1201 tgacctggag tcagaaggta tttctctgtc tgtgtgttca caggcagtgt ggttgattac
     1261 atgaaattca gtacatttgc agtctcgttg cccttctcgc ctgcctttcg tcattaccga
     1321 cggtattgaa tttcgttttc cccgttgggg ttctccgaac aaggagttgt ttgttatgcc
     1381 acgttttttt gcccgccatg ccgccacgct gtttttcccg atggcgttga ttttgtatga
     1441 ctttgccgcg tacctgtcga cggatctgat ccagccgggg atcattaatg tggtccgtga
     1501 ttttaatgcc gatgtcagtc tggccccggc agccgtcagt ctctatctcg cgggcggtat
     1561 ggcgttacag tggctgctgg ggccgctttc cgacaggatt ggccgcaggc cggtgctgat
     1621 taccggggcg ctaatattta cccttgcctg cgctgcgaca atgttcacaa cgtctatgac
     1681 acagtttctt atcgcgcgtg caattcaggg caccagtatc tgttttattg ccaccgttgg
     1741 ttatgtcacg gtgcaggagg cgttcggcca gacaaaaggg atcaagttga tggcgattat
     1801 cacctccatc gtactgattg cgccgattat tggcccgctt tccggcgcag ctctgatgca
     1861 ctttgtgcac tggaaagtcc tttttgccat cattgcagtt atgggtttta tctcatttgt
     1921 tggcttactg ctggcgatgc cagagacggt gaagcgcggc gcggttccat ttagcgccaa
     1981 aagcgtcttt cgcgattttc gtaatgtctt ttgcaatcgg ctgttcctct ttggcgcagc
     2041 aaccatctct ttaagctata tcccaatgat gagttgggtg gctgtctcgc cggtgatcct
     2101 gatcgacgcg ggcagcttaa caacttcgca gttcgcctgg acacaggttc cggtgttcgg
     2161 cgcggtgatt gtcgcgaatg ccatcgtggc gcgtttcgtt aaagatccga ccgaaccgcg
     2221 ctttatctgg cgtgctgtac ccattcaact ggtcggcctc gcgctgttga ttatcggcaa
     2281 tctgctgtca ccgcacgtct ggctgtggtc ggtgctgggc accagtttgt atgctttcgg
     2341 gattggtttg atcttcccga ccttattccg ctttacgctt ttttccaata acttaccgaa
     2401 agggaccgtc tccgcatcgc tgaatatggt gatcctgatg gtgatgtctg tctcggtcga
     2461 aatcggccgc tggctgtggt ttaacggcgg tcgcttgccg tttcatctgt tagccgtcgt
     2521 ggcgggcgtt atcgtcgttt tcaccctggc aggattgctt aatcgcgtgc gccaacatca
     2581 ggctgccgag ctggcggagg agcggtgatt tttgcgcgat cctgccgtca ggctctattc
     2641 ttaacgttat gaataaactc attgaactca gacgcgccaa aatgttggcg ctctctttac
     2701 tgcttatcgc cgctgctacc tttgtcgtta cgctgttttt gccgcccaat ttttgggtga
     2761 gcggcgtgaa ggcgattgct gaagcggcga tggtcggcgc gctggcggac tggtttgcgg
     2821 tggtggcgct gtttcgccgc gtgccgattc cgatcatttc tcgtcatacg gcgattatcc
     2881 cgcgtaataa agaccggatt ggcgaaaatc tcggtcagtt cgtgcaggaa aaatttctcg
     2941 atacccagtc gctggtggca ttgattcgac gtcacgaacc ggcgttgttg attggcaact
     3001 ggtttagtca gccggagaac gcccgccgcg ttggtcagca tctgttgcag atcatgagcg
     3061 gttttcttga actgaccgat gatgcgcgta ttcagcgcct gcttaagcgc gcggtccatc
     3121 gggcgattga taaggtcgat ctttccggaa ccagtgcgtt gatgctggag agtatgacca
     3181 aaaacgatcg tcatcaggtg ctgctcgata cgctgatcgc acagttgatc gcccttctcc
     3241 agcgcgataa atcgcgcaag tttattgccc agcaaattgt tcgctggctg gagagcgagc
     3301 atccgctgaa agccaaaatt ttgcctactg aatggctggg cgaacatagc gcggagttgg
     3361 tttctgacgc ggtgaattct ttgcttgatg atatcagccg cgatcgtgcg catcagatcc
     3421 gtcatgcgtt tgatcgcgcc acttttgccc tgatcgacaa gctgaaaaac gatccggaaa
     3481 tggcagcgcg agccgatgcc gtaaaaagtt atctgaaaga agatgaagct tttaaccgct
     3541 atctcagtga attgtggggg gatttacggg aatggctgaa agcggatatc aacagtgaag
     3601 attctcgtgt gaaagaacgt atcgcgcggg cgggtcaatg gtttggcgaa acgttaattg
     3661 ccgatgatgc cttgcgggca tcgttaaatg gtcacctgga acaagccgcg caccgcgtcg
     3721 cgcctgagtt ttccgcattc ctgacgcgcc acatcagcga tacagtaaaa agctgggatg
     3781 ctcgggatat gtcgcggcaa atcgagttaa atatcggcaa agatctgcag tttatccgtg
     3841 tcaacggtac gctggttggc ggttgtattg ggctaatttt atatttgttg tcgcagctcc
     3901 cggccttgtt ccccctcagc aatttttaga aatccatgaa aaactaagtg gctaaccgcg
     3961 agagagatca aataaaccac actaaaagaa tggtaataat gtggcctctt ttcattatct
     4021 cccgtggtac ggggaaggaa aatcatgtca cttatcaccg atctacccgc cattttcgat
     4081 cagttctctg aagctcgcca gaaaggcttt ctcaccgtca tggatctcaa ggagcgcggc
     4141 attccgctgg ttggcactta ctgcaccttt atgccgcaag agatcccgat ggcagccggt
     4201 gcggttgtgg tttcgctctg ttctacctct gatgaaacca ttgaagaagc ggagaaagat
     4261 ctgccgcgca acctctgccc gctgattaaa agcagctacg gcttcggcaa aaccgataaa
     4321 tgcccctact tctacttttc ggatctggtg gtcggtgaaa ccacctgcga cggcaaaaag
     4381 aaaatgtatg aatacatggc ggagtttaag cccgttcatg tgatgcagtt gccgaacagc
     4441 gttaaggacg atacctcgcg tgcgttatgg aaagccgaga tgctgcgctt gcaaaaaacg
     4501 gtagaagaac gttttgggca cgagattagc gaagatgctc tgcgcgatgc cattgcgctg
     4561 aaaaaccgcg aacgtcgcgc actggccaat ttttatcatc ttgggcagtt aaatcctccg
     4621 gcgcttagcg gcagcgacat tctgaaagtg gtctacggcg caaccttccg gttcgataaa
     4681 gaggcgttga tcaatgaact ggatgcaatg accgcccgcg ttcgtcagca gtgggaagaa
     4741 ggccagcgac tggacccgcg tccacgcatt ttaatcaccg gctgcccgat tggcggcgca
     4801 gcaaaaaaag tggtgcgggc gattgaagag aatggcggct gggttgtcgg ttatgaaaac
     4861 tgcactgggg cgaaagcgac cgagctaatg cgtggcggaa acgggcgatg tctacgacgc
     4921 gctggcggat aaatatctgg cgattggctg ctcctgtgtt tcgccgaacg atcagcgcct
     4981 gcaaatgctc agccagatgg tggaagaata tcaggtcgat ggcgtagttg atgtgatttt
     5041 gcaggcgtgc catacctacg cggtggaatc gctggcgatt aaacgtcatg tgcgtcagca
     5101 gcacaacatt ccttatatcg ctattgaaac agactactcc acctcagatg tcgggcagct
     5161 cagtacccgt gtcgcggcct ttattgagat gctgtaagga gtggcagtga catattcgat
     5221 tggcattgat tctggttcta ccgccaccaa agggatctta ctggcagacg gcgtgattac
     5281 gcgccgtttc ctcgttccaa caccctttcg tccggcaaca gcaattactg aagcctggga
     5341 aactctgcgc gaagggttag agacaacgcc gtttctgacg ctcaccggct atggacggca
     5401 actggtggat tttgccgata aacaagtgac ggaaatctcc tgtcacgggc tgggcgcacg
     5461 gtttcttgcg ccagcaacgc gcgcggtaat cgacatcggt ggtcaggaca gcaaagtgat
     5521 tcagcttgat gatgacggta acctgtgcga tttcctgatg aatgacaaat gcgcggcggg
     5581 caccgggcgt ttcctggaag tgatctcgcg cacgcttggc accagcgtcg agcaactcga
     5641 cagcattacc gaaaatgtca cgccgcatgc catcacgagt atgtgcacag tgtttgccga
     5701 atcagaagtg atcagcctgc gctcagcggg cgtcgcgcca gaagcgattc tcgccggagt
     5761 gattaacgcg atggcgcgga ggagtgccaa tttcattgct cgtctctcct gtgaagcgcc
     5821 gattctgttt actggtggcg ttagtcattg ccagacgttt gcccggatgc tggaatctca
     5881 cctgggaatg ccggtaaata cccatcctga tgcgcaattt gctggcgcaa ttggcgcggc
     5941 ggtaattggt caacgagtga ggacacgccg atgaaagagt ttttattttt atttcactcc
     6001 acagtcggcg tcatacaaac ccgcaaagcg ttgcaggcag cgggcatgac ttttcgcgtc
     6061 agcgatattc cccgtgattt acgcggcggc tgcgggttat gcatttggct gacctgtccc
     6121 cccggcgagg aaatacaatg ggtgatccct gggctgactg agtcaattta ttgccagcag
     6181 gatggtgtct ggcgctgcat tgcacattac cgggtttctc cgcgttaagg attcattaag
     6241 gtcgctacgt atacttctcg atatcttatt gatttgcctt aaagggatta ccgtgacaaa
     6301 aagtatttcg ttaagtaaac gcatctccgt tattgtgatt ctttttgcca ttgtggcagt
     6361 gtgtactttc ttcgtgcaat cttgcgcccg taaaagcaat catgcagcat catttcagaa
     6421 ttaccacgcc accattgacg gcaaagaaat tgcaggcata acgaataata tctcttcgct
     6481 gacctggtcg gcacaaagca atactctttt tagcactatc aacaaacctg ccgccattgt
     6541 tgaaatgacc accaatggtg attttatccg cacaattctt ctggattttg ttaaggatct
     6601 cgagacgatc gaatacattg gcgataatca gtttgtcatt agcgatgagc gcgattacgc
     6661 catttatgtg atttcactga ccccaaactc ggaagtaaaa atcctcaaaa aaataaaaat
     6721 cccgctgcaa gactccccaa ccaattgcgg ttttgaaggg ttggcttatt ctcgccagga
     6781 tcacactttc tggtttttta aagagaaaaa tccgattgag gtctacaaag ttaacgggct
     6841 gttaagtagc aatgaattac acatcagcaa agacgaggca ctacaacggc aatttacttt
     6901 agatgatgtg tccggcgcag aatttaacca gcaaaaaaat acgcttctgg tgctgtctca
     6961 tgaatctcgc gcactccagg aagtaaccct ggttggcgag gttatcggtg aaatatcact
     7021 aaccaaaggt agtcgaggtt tgtcgcataa catcaaacag gccgaaggga ttgcgatgga
     7081 tgcctctggt aatatttata tcgttagcga accaaatcgt ttttatcgct ttacccctaa
     7141 atcatcgcat taacaggctg gcatatttca cctttttgtt attaacttgt taacaacaaa
     7201 aatgacatac aaggttaaac atgccttcgt cctcgcatcc cgtagaacgc ttttctttca
     7261 gcaccgcgct tttcgggatg ctggttctga ccctaggtat gggattaggt cgcttccttt
     7321 atacgcctat gttgcccgtc attatggcgg aaggggcgtt ttcatttagc cagctctcgt
     7381 ggattgccag cggcaactat gcggggtatc tggctggcag tctgctattt tcgtttggcg
     7441 catttcacca gccgtcgcgc ctacgcccat ttctgttggt ttctgccctg gcgagcgggt
     7501 tgttgatcct cgcaatggca tggttgccgc catttattct ggtgttattg attcgcttcc
     7561 tggcgggtgt cgccagcgcc ggtatgctga tttttggttc gacgctgatt atgcagcaca
     7621 cgcgccatcc ttttgtgctg gcagctttgt tttctggcgt tggcattggc attgcactgg
     7681 gcaacgaata tgttctggca ggcctgcatt ttgccttctc ctcgcaaacg ttatggcaag
     7741 gcgccggggc gctttctggc atgatgctga ttgcacttac gcttttaatg ccctcgaaaa
     7801 aacacgccat cgcaccaatg ccattggcaa aaacggagca acagataatg agctggtggt
     7861 tactggctat tctgtacggc cttgcgggat ttggttatat catcgtcgcg acttacctgc
     7921 cgctcatggc gaaagatgca ggctcaccat tgttaaccgc ccatctctgg acgttagtcg
     7981 gcttatcaat tgtgccaggc tgctttggct ggctatgggc agcaaaacgt tggggggctt
     8041 tgccttgcct gacggcgaat ttgctggtgc aggctatcag tgtgctgctt actctcgcca
     8101 gcgactctcc tctcttgctt atcattagta gtatcggttt tggcggtacc tttatgggca
     8161 cgacatctct ggtgatgact atcgcccgcc aactgagcgt tccgggaaat ctcaatcttt
     8221 taggctttgt gacgctcatt tacggcattg gacaaatcct cggcccggcg ctgaccagta
     8281 tgctcggcaa tggaacatcg gcgcttgccg gcgccactct ctgcggcgcg gcggcgttgt
     8341 ttattgctgc gcttatcagc acagtacaat tatttaagct gcaagtggtc acttcatgag
     8401 gagtgtttcc cttaccactc aagaaattcg accgcaaccg ttgatgtcag ccagactccg
     8461 ttttccgctt gccagaaagg aatgcctcgt ttcgccattt cctgtgcttt gacggttaag
     8521 acaaccggcg atccgtgtct tgctcccact ttgcgtgccg ttgcttcatc agcagagaga
     8581 tgcacgtaat gacgatcccc tgcaatcagc ccctgttttt ttatctcgtc aaggaaacgg
     8641 cttgccgtac cgtggtagag aaactgtggc ggtgtttttt cggcaaagga aatagcgacc
     8701 tgcgaagtcg aatgcccctg aaccgcgcgg atgcacctac catcactgga ataactaaaa
     8761 cgctttttat cgctggttgc gaccacggta tccagcaatg cacgggttaa tcgcttgccc
     8821 gctttttggg cacaaagtat gagcttatcg atatccgccc atccttcacg gtccagtacg
     8881 ataccaatcg cctccggttt gtgtcggagg acaaaactta aaaacttgct cgtatccgcc
     8941 agctcttttt cgttgtgctt tgccatctcg ttttcgtccc tggattttct gtttttattt
     9001 accaatgtca ttgtcactgg gtttatgaat tttctgcaac tcaatcctgc gcagaacctt
     9061 ttccacacag cgtaatgttt cccctatgca aaaaacgcat agccagaaac atacttgcat
     9121 tttccccata cccacatggc tgataaggtt tttcagttcc aggaattttc ctggctcaag
     9181 caacacacaa acacaaaaaa acaatgggga ttgttatgac acaacaaggg gatgctgtag
     9241 ccggggagct ggcgacagaa aaagtgggca ttaaagggta tctggctttt tttctcacca
     9301 taatcttttt ttccggtgtt ttttccggaa cagacagctg gtggcgcgtt tttgattttt
     9361 ccgttctgaa cggatcgttt gggcaactgc ctggtgcgaa cggagccacc acctcatttc
     9421 gcggcgcggg tggtgcgggg gctaaagatg gctttctctt tgcgctggag ctggcaccgt
     9481 cagtcattct ctctctgggg attatttcaa ttaccgatgg tcttggtgga ttacgcgccg
     9541 cgcagcagtt aatgacacct gtgctaaaac cgttgttggg cattccaggg atctgctcgc
     9601 tggcgctgat cgctaacttg caaaacactg atgccgccgc cggtatgacc aaagagctgg
     9661 cgcaggaagg tgaaattacc gaacgcgata aagtgatttt cgccgcatat caaaccagcg
     9721 gtagcgccat catcaccaac tacttctctt ccggcgtcgc ggtgttcgcc tttctgggca
     9781 cgtccgtaat cgtaccttta gccgtcatcc tggtgtttaa atttgtcgga gccaacattt
     9841 tgcgcgtctg gcttaacttc gaagaacgtc gcaacccaac gcaaggagcg caagcatgac
     9901 aactcaggtc cgcaaaaacg tcatggatat gtttatcgat ggcgcgcgcc gtggctttac
     9961 tatcgccacg accaacctgc tgccaaacgt ggtgatggcg tttgtcatca ttcaggcgct
    10021 gaaaattacc ggcctgctcg actgggtggg gcatatctgt gaacccgtaa tggcgcagtc
    10081 ggtgttgccg ccagtctggc aaccgctggc gcattaaccg gtcacgatgt caccgtttta
    10141 ctgcccgcga tgtatttaat gggcaacccg gtgcaaaatg tcggtcgctg cctggggaca
    10201 gccgaagtga atgccaaata ttacccgcat atcattacgg tctgcgtgat taacgcattg
    10261 ctgtcgatct gggttatgca gcttattgtt taacaaggag ttaccatgat tgattatacc
    10321 gcagccggtt ttaccctgct gcagggagcg catttgtatg caccggaaga tcggggaatt
    10381 tgcgatgtcc tcgtcgctaa cggcaaaatt atcgccgttg ccagcaatat cccttctgac
    10441 attgtaccga actgcacggt tgtcgatctc agtgggcaga tcctctgccc aggttttatt
    10501 gatcaacacg tccatttgat tggcggtggc ggcgaagcag gtcccacgac gcgcacgccg
    10561 gaagtggcgc taagtcgcct gacggaagcg ggcgtcacgt cagtggttgg tctgctgggc
    10621 accgactcta tctctcgcca cccggaatcc ctgctcgcca agacccgtgc gctcaatgaa
    10681 gaaggcatca gcgcctggat gctgaccggc gcttatcatg tcccttcccg cactattacg
    10741 ggttccgtgg aaaaagacgt ggcgattatc gatcgtgtga ttggcgtgaa atgcgccatc
    10801 tctgatcacc gttctgccgc accggacgtt tatcacctgg ctaatatggc ggcagaatcc
    10861 cgcgttggcg gtttgctcgg cagtaaacct ggcgtcaccg tgttccacat gggcgacagt
    10921 aaaaaggcgt tacagcctat ttatgacctg ctggaaaact gcgatgtgcc gatcagcaag
    10981 ctgctgccga cccacgttaa ccgcaacgta ccgttgtttg agcaggcgct ggagttcgcg
    11041 cgcaaaggcg gcaccatcga tatcaccagc agcattgacg aaccggtcgc ccctgccgaa
    11101 ggtattgccc gcgccgttca ggcgggtatt ccgctggcac gcgtcaccct cagctccgac
    11161 ggcaacggta gccagccgtt cttcgatgac gaagggaatt taacccatat cggtgttgca
    11221 ggttttgaaa cgttgctgga aaccgtgcag gtgctggtca aagactatga tttcagtatc
    11281 agcgatgccc tgcgcccgct caccagtagc gtagccggtt tccttaacct gagcgggaaa
    11341 ggcgaaattc tgcttggcaa tgacgcagac ttactagtca tgacgccaga attgcgcatt
    11401 gagcaggtat atgctcgcgg caaactgatg gtcaaagacg gcaaagcctg cgtgaaagga
    11461 acgtttgaaa cggcttaaac ggttgtcagc cgccctaatg gacgtagaat gcccgcaagg
    11521 gcggctgaca gagtaaaacg taatggatga ctgtggtgcg gttttgcata atattgaaac
    11581 caaatggctt tatgattttc tgaccctgga aaaatgccgc aatttttccc aggcggcagt
    11641 cagtcgtaac gtctcgcaac cggcattcag ccgccgcatc cgcgcgctgg aacaggcgat
    11701 tggcgttgaa ttgtttaacc gccaggtgac gccgctgcaa ctctcagaac aagggaaaat
    11761 cttccattcg cagatccgcc atctgttgca acagttagaa agtaaccttg cagagctgcg
    11821 tggcggcagc gattacgcgc aacgtaaaat caagatagcc gctgcacact ctctttccct
    11881 cggtctgtta ccgtccatta tcagccagat gccgccgctc tttacctggg cgattgaagc
    11941 tattgatgtc gatgaagcag tcgataaact gcgtgaaggg caaagtgact gtattttttc
    12001 ctttcacgac gaagatttgc tggaagcacc gtttgaccac attcgcttat ttgaatctca
    12061 attgttcccc gtttgcgcca gtgacgaata cggagaagca atttttaacc tcgcgcagcc
    12121 acactttccg ttactgaatt acagccgcaa ctcctatatg gggcgattga ttaatcgcac
    12181 cctgacgcgc cacagcgagt taagtttcag cacctttttt gtctcttcga tgagcgagct
    12241 attaaagcag gttgccctcg acggctgtgg gattgcctgg ctgccggagt atgccatcca
    12301 acaagaaatt cgcagcgggc aactcgttgt gctgaatcgg gacgaactgg tgatcccgat
    12361 tcaggcctac gcataccgta tgaatacccg catgaatcca gttgccgaac gcttctggcg
    12421 tgaactgcgc gagctggaga ttgtgcttag ctgacattct caagcgtcgc actgcgccaa
    12481 ccgccattat cccagaccag atcaaacgtt agcggttcat cgtcgtggta cagcattatc
    12541 tcaaggctga tcgccagagt gtggcagtac gcttctttca aattaacctg caacgccgca
    12601 atccgtggct catgaaataa cagtgcagaa cgcagctgac ggcaatacca gctctggaga
    12661 tgtttgtcgc tcgggttatg cacttgccac tcgggcatgc ctgaaacaag taatgacggt
    12721 aatgccgaat gaggagaatt aaaaagagtg aggagatcgc tgcataccga tttacgcagc
    12781 aatgacgttt tattgcctga aatttcaggt aaaacagcct gaagtgattg gcgcatcatt
    12841 ttgcgcactc ctgacgttta gcaacatatg cggcttgccc tgaacaccgg gcaccactgt
    12901 attgatgc
//
LOCUS       DADMHM010000118        12723 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.119, whole genome shotgun sequence.
ACCESSION   DADMHM010000118 DADMHM010000000
VERSION     DADMHM010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12723)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12723)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12723
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.119"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..880)
                     /gene="rarD"
                     /locus_tag="JN125_002769"
     CDS             complement(<1..880)
                     /gene="rarD"
                     /locus_tag="JN125_002769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HAY8872500.1"
                     /translation="MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVI
                     WSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEA
                     SLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFS
                     FAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMLLNLLLIA
                     AGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFI
                     WVALAIFVMDAIYTQRR"
     gene            complement(932..1399)
                     /locus_tag="JN125_002770"
     CDS             complement(932..1399)
                     /locus_tag="JN125_002770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001350877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HAY8872501.1"
                     /translation="MSAVLTAEQALKLVGEMFVYHMPFNRALGMELERYEKEFAQLAF
                     KNQPMMVGNWAQSILHGGVIASALDVAAGLVCVGSTLTRHETISEDELRQRLSRMGTI
                     DLRVDYLRPGRGERFTATSSLLRAGNKVAVARVELHNEEQLYIASATATYMVG"
     gene            1564..2433
                     /gene="pldA"
                     /locus_tag="JN125_002771"
     CDS             1564..2433
                     /gene="pldA"
                     /locus_tag="JN125_002771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HAY8872502.1"
                     /translation="MRTLQGWLLPVFMLPMAVYAQEATVKEVHDAPAVRGSIIANMLQ
                     EHGNPFTLYPYDTNYLIYTQTSDLNKEAIASYDWAENARKDEVKFQLSLAFPLWRGIL
                     GPNSVLGASYTQKSWWQLSNSEESSPFRETNYEPQLFLGFATDYRFAGWTLRDVEMGY
                     NHDSNGRSDPTSRSWNRLYTRLMAENGNWLVEVKPWYVVGNTDDNPDITKYMGYYQLK
                     IGYHLGDAVLSAKGQYNWNTGYGGAELGLSYPITKHVRLYTQVYSGYGESLIDYNFNQ
                     TRVGVGVMLNDLF"
     gene            2566..4395
                     /gene="recQ"
                     /locus_tag="JN125_002772"
     CDS             2566..4395
                     /gene="recQ"
                     /locus_tag="JN125_002772"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026263.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecQ"
                     /protein_id="HAY8872503.1"
                     /translation="MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCL
                     VVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTRE
                     LQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRP
                     EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLM
                     EKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRA
                     DVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPA
                     EAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFGEG
                     RQEPCGNCDICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIRDY
                     GHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNIAQHSALQLTEAARPVLRGESSL
                     QLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFNDATLIEM
                     AEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVDGDDEE"
     gene            4459..5079
                     /gene="rhtC"
                     /locus_tag="JN125_002773"
     CDS             4459..5079
                     /gene="rhtC"
                     /locus_tag="JN125_002773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine export protein RhtC"
                     /protein_id="HAY8872504.1"
                     /translation="MLMLFLTVAMVHIVALMSPGPDFFFVSQTAVSRSRKEAMMGVLG
                     ITCGVMVWAGIALLGLHLIIEKMAWLHTLIMVGGGLYLCWMGYQMLRGALKKEAVSAP
                     APQIELAKSGRSFLKGLLTNLANPKAIIYFGSVFSLFVGDNVGTTARWGIFALIIVET
                     LAWFTVVASLFALPQMRRGYQRLAKWIDGFAGALFAGFGIHLIISR"
     gene            complement(5141..5761)
                     /gene="rhtB"
                     /locus_tag="JN125_002774"
     CDS             complement(5141..5761)
                     /gene="rhtB"
                     /locus_tag="JN125_002774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine/homoserine lactone efflux protein"
                     /protein_id="HAY8872505.1"
                     /translation="MTLEWWFAYLLTSIILSLSPGSGAINTMTTSLNHGYRGAVASIA
                     GLQTGLAIHIVLVGVGLGTLFSRSVIAFEVLKWAGAAYLIWLGIQQWRAAGAIDLKSL
                     ASTQSRRHLFQRAVFVNLTNPKSIVFLAALFPQFIMPQQPQLMQYIVLGVTTIVVDII
                     VMIGYATLAQRIALWIKGPKQMKALNKIFGSLFMLVGALLASARHA"
     gene            5874..6896
                     /gene="pldB"
                     /locus_tag="JN125_002775"
     CDS             5874..6896
                     /gene="pldB"
                     /locus_tag="JN125_002775"
                     /EC_number="3.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipase L2"
                     /protein_id="HAY8872506.1"
                     /translation="MFQQQKDWETRENAFAAFTMGPLTDFWRQRDEAEFTGVDDIPVR
                     FVRFRAQHHDRVVVICPGRIESYVKYAELAYDLFHLGFDVLIIDHRGQGRSGRLLADP
                     HLGHVNRFNDYVDDLAAFWQQEVQPGPWRKRYILAHSMGGAISTLFLQRHPGVCDAIA
                     LTAPMFGIVIRMPSFMARQILNWAEAHPRFRDGYAIGTGRWRALPFAINVLTHSRQRY
                     RRNLRFYADDPTIRVGGPTYHWVRESILAGEQVLAGAGDDATPTLLLQAEEERVVDNR
                     MHDRFCELRTAAGHPVEGGRPLVIKGAYHEILFEKDAMRSVALHAIVDFFNRHNSPSG
                     NRSTEV"
     gene            6904..7704
                     /gene="yigL"
                     /locus_tag="JN125_002776"
     CDS             6904..7704
                     /gene="yigL"
                     /locus_tag="JN125_002776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar/pyridoxal phosphate phosphatase YigL"
                     /protein_id="HAY8872507.1"
                     /translation="MYQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGINFVFATGR
                     HHVDVGQIRDNLEIKSYMITSNGARVHDLDGNLIFAHNLDRDIASDLFGVVNDNPDII
                     TNVYRDDEWFMNRHRPEEMRFFKEAVFKYALYEPGLLEPEGVSKVFFTCDSHEQLLPL
                     EQAINARWGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMND
                     AEMLSMAGKGCIMGSAHQRLKDLHPELEVIGTNADDAVPHYLRKLYLS"
     gene            7780..8679
                     /gene="bioP"
                     /locus_tag="JN125_002777"
     CDS             7780..8679
                     /gene="bioP"
                     /locus_tag="JN125_002777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter"
                     /protein_id="HAY8872508.1"
                     /translation="MALLIITTILWAFSFSFYGEYLAGHVDSYFAVLVRVGLAALVFL
                     PFLRTRGNSLKTVGLYMLVGAMQLGVMYMLSFRAYLYLTVSELLLFTVLTPLYITLIY
                     DIMNKRRLRWGYAFSALLAVIGAGIIRYDQVTDHFWTGLLLVQLSNITFAIGMVGYKR
                     LMETRPMPQHNAFAWFYLGAFLVAVIAWFLLGNAQKMPQTTLQWGILVFLGVVASGIG
                     YFMWNYGATQVDAGTLGIMNNMHVPAGLLVNLAIWHQQPHWPTFITGALVILASLWVH
                     RKWVAPRSSQTADDRRRDCALSE"
     gene            complement(8567..9520)
                     /gene="metR"
                     /locus_tag="JN125_002778"
     CDS             complement(8567..9520)
                     /gene="metR"
                     /locus_tag="JN125_002778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator MetR"
                     /protein_id="HAY8872509.1"
                     /translation="MIEVKHLKTLQALRNCGSLAAAAATLHQTQSALSHQFSDLEQRL
                     GFRLFVRKSQPLRFTPQGEILLQLANQVLPQISQALQACNEPQQTRLRIAIECHSCIQ
                     WLTPALENFHKNWPQVEMDFKSGVTFDPQPALQQGELDLVMTSDILPRSGLHYSPMFD
                     YEVRLVLAPDHPLAAKTRITPEDLANETLLIYPVQRSRLDVWRHFLQPAGVSPSLKSV
                     DNTLLLIQMVAARMGIAALPHWVVESFERQGLVVTKTLGEGLWSRLYAAVRDGEQRQP
                     VTEAFIRSARNHACDHLPFVKSAERPTYDAPTVRPGSPARL"
     gene            9756..12017
                     /gene="metE"
                     /locus_tag="JN125_002779"
     CDS             9756..12017
                     /gene="metE"
                     /locus_tag="JN125_002779"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HAY8872510.1"
                     /translation="MTILNHTLGFPRVGLRRELKKAQESYWAGNSTREELLAVGRELR
                     ARHWDQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPARHQNKDGSVDIDTLFRIGRG
                     RAPTGEPAAAAEMTKWFNTNYHYMVPEFVKGQQFKLTWTQLLEEVDEALALGHNVKPV
                     LLGPVTWLWLGKVKGEQFDRLSLLNDILPVYQQVLAELEKRGIEWVQIDEPALVLELP
                     QAWLDAYKPAYDALQGQVKLLLTTYFEGVTPNLDTITALPVQGLHVDLVHGKDGVAEL
                     HKRLPSDWLLSAGLINGRNVWRADLTEKYAQIKDIVGKRDLWVASSCSLLHSPIDLSV
                     ETRLDAEVKSWFAFALQKCHELALLRDALKSGDTAALAEWSAPIQARRHSTRVHNPAV
                     EKRLAAITAQDSQRANVYEVRAEAQRARFKLPAWPTTTIGSFPQTTEIRTLRLDFKKG
                     NLDANNYRTGIAEHIKQAIVEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGW
                     VQSYGSRCVKPPIVIGDVSRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPRE
                     DVSRETIAKQIALALRDEVADLEAAGIGIIQIDEPALREGLPLRRSDWDAYLQWGVEA
                     FRINAAVAKDDTQIHTHMCYCEFNDIMDSIAALDADVITIETSRSDMELLESFEEFDY
                     PNEIGPGVYDIHSPNVPSVEWIEALLKKAAKRIPAERLWVNPDCGLKTRGWPETRAAL
                     ANMVQAAQNLRRG"
     gene            complement(12302..12547)
                     /locus_tag="JN125_002780"
     CDS             complement(12302..12547)
                     /locus_tag="JN125_002780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000627420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HAY8872511.1"
                     /translation="MITETEINVLKVMAEKDINWNWMNLDRTLSIRQIPGFGNVVNIV
                     NKLANEGLVIIEDSGHKSMPHYHVTEKGYNFVKSENK"
BASE COUNT         3011 a         3220 c         3403 g         3089 t
ORIGIN      
        1 ttctacgctg cgtataaatc gcatccatca caaaaattgc cagcgccacc caaataaagg
       61 cgaaggtcac catcttatcg gcacccggtt tttcaccata aaacgtcact gccaacagga
      121 acatcagcgt cgggccaata tactggaaga agcctaacgt ggagagacgc aggcgtgtag
      181 cagctgcggt aaaacacaac agcggtacgg tggtgacaat accggcggcg atcagcagca
      241 aattcagcaa catcgggttt tgccccatat ggctggttga gctgtcggca atagcaaaca
      301 gataaatcgc cgccacgggc agcagccaca tggtttcgat taacatgccg gtttgcgctt
      361 caacggcaat tttcttgcgt accagtccgt agaaggcaaa actaaacgcc agccccagcg
      421 cgatgattgg cagcgaacca aaagtccaca actgaaccaa cacgccacat atcgccagaa
      481 tcaccgccag ccattgcatc cggcggaatc gctcgccgag gaaaatcatc cccagcacaa
      541 tgttcaccag cgggttaata aagtaaccaa ggctcgcttc cagcatatgg tgattgttca
      601 ccgcccagat aaacagtagc cagttgccac caatcagcac ggcagagact gccagcataa
      661 aaattttctg tggcgtctga atcagcgttt ttaaatagga ccactggcgg caaatgctca
      721 tcagcaccac cataaagaaa aacgaccaga tcacgcgatg cgtcaggatc tcatcggcgg
      781 gcacgtagta aatcagcttg aagtatgctg gcgcaatacc ccaaataaaa taagcggcaa
      841 gagcgagtaa tacgccctgc cgcgtttgtt ttgcatccat cgggaatact catttttaat
      901 tggtaacagc agtttacctg cttttatgtc ttcaacctac catataggtg gcggtggcac
      961 tggcaatata aagctgttct tcattgtgta attcaacgcg ggcgacggcg actttattgc
     1021 ctgcacgcaa caggctactg gtagcagtaa aacgctcgcc cctgcctggg cgcagataat
     1081 caacgcgaag atcaatggtc cccatccgcg atagccgctg gcgtagttca tcttcactga
     1141 tggtttcgtg gcgggttaag gtacttccca cgcacaccag accggcggcg acatccagcg
     1201 ccgacgcaat gactccgccg tgcaaaatgc tttgcgccca gttacccacc atcatcggct
     1261 gatttttaaa ggccagctgt gcgaactctt tttcgtaacg ctccagctcc atccctaacg
     1321 cgcggttaaa tggcatgtga taaacaaaca tctcacccac taatttcagg gcttgttcag
     1381 cggtcagtac ggcagacata tcatccttac acttcattgg ttaatgaaat gttgatttta
     1441 tgcttctttg ttgttagttt ctactttagg aagggataac taacggcaat ggagttaagt
     1501 atgtaaaata gcccgcagaa aaacattcac cttatcaata attcgttacg gagaacacga
     1561 ccgatgcgga ctctgcaggg ctggttgttg ccggtgttta tgttgcctat ggcagtatat
     1621 gcacaagagg caacggtgaa agaggtgcat gacgcgccag cggtgcgtgg cagtattatc
     1681 gccaatatgc tgcaggagca tggcaatccg ttcacgctct atccttatga cactaactac
     1741 ctcatctaca cccaaaccag cgatctgaac aaagaagcga ttgccagtta cgactgggcg
     1801 gaaaatgcgc gtaaggatga agtaaagttt cagttgagcc tggcatttcc actgtggcgt
     1861 gggattttag gcccgaactc ggtgttgggt gcgtcttata cgcaaaaatc ctggtggcaa
     1921 ctgtccaata gcgaagagtc ttcaccgttt cgtgaaacca actacgaacc gcaattgttc
     1981 ctcggttttg ccaccgatta ccgttttgca ggttggacgc tgcgcgatgt ggagatgggg
     2041 tataaccacg actctaacgg gcgttccgac ccgacctccc gcagctggaa ccgcctttat
     2101 actcgcctga tggcagaaaa cggtaactgg ctggtagaag tgaagccgtg gtatgtggtg
     2161 ggtaatactg acgataaccc ggatatcacc aaatatatgg gttactacca gcttaaaatc
     2221 ggctatcacc tcggtgatgc ggtgttgagt gcgaaaggac agtacaactg gaataccggt
     2281 tacggcggcg cggagttagg cttaagttac ccgatcacca aacatgtgcg cctttatact
     2341 caggtttaca gcggctatgg cgaatcgctc atcgactata acttcaacca gacccgtgtc
     2401 ggtgtaggag ttatgctaaa cgacttgttt tgatgaacgg ttgagtggtt ggcaaatctg
     2461 gaacccagca tccaggatta ccctctcaga gactaaaagc attgcagttt ctcgcgcagg
     2521 cgctgaaaat agcgcctgtt tttatttcag gcaatcgggg tgaatgtggc gcaggcggaa
     2581 gtgttgaatc tggagtccgg agctaaacag gttttacaag aaacctttgg ctaccaacag
     2641 tttcgccccg gccaggaaga aattatcgac actgtgcttt ccggtcgcga ttgcctggtc
     2701 gtcatgccca ccggtggcgg aaaatccctt tgctatcaaa ttcctgcctt attgctaaac
     2761 ggccttaccg tggttgtttc accgctgatt tcgttgatga aagatcaggt ggatcaactg
     2821 caagccaacg gcgtggcggc ggcgtgcctt aactcgacgc aaacccgcga gctgcaactt
     2881 gaagtgatga caggctgccg caccgggcaa attcgtctgc tttatatcgc cccggaacgc
     2941 ctgatgctgg ataactttct tgagcatctg gcgcactgga atccggtgtt attagccgtt
     3001 gatgaagcgc actgtatctc ccaatggggc cacgatttcc gcccggaata tgccgcgctt
     3061 ggtcagttac gccagcgttt cccgaccctg ccgtttatgg cgctgactgc cacagccgac
     3121 gacaccacgc gccaggatat cgtgcgcttg ctggggctga acgatccgct gattcaaatc
     3181 agcagttttg accgtccgaa tattcgctac atgctgatgg agaagttcaa accgctcgat
     3241 cagttgatgc gctacgtgca ggaacagcgc ggtaagtcag gcattatcta ctgcaacagc
     3301 cgcgcgaaag tagaagacac cgctgcgcgc ctgcaaagca agggaattag cgcggcggcc
     3361 tatcatgctg ggctggaaaa taatgttcgc gccgacgtgc aggaaaaatt tcagcgcgat
     3421 gacctgcaaa ttgtggtggc gacggtggcg ttcggcatgg gcatcaataa accaaacgtt
     3481 cgcttcgtgg tccactttga tattccgcgc aatatcgaat cctattatca ggaaaccggt
     3541 cgcgccgggc gtgatggcct gcccgcggaa gcgatgctgt tttacgatcc ggccgatatg
     3601 gcgtggctgc gccgttgcct ggaagagaag ccgcaggggc agttacagga tatcgaacgt
     3661 cataaactca atgcgatggg cgcttttgcc gaagcgcaaa cttgccgtcg tctggtattg
     3721 ctgaactatt ttggcgaagg gcggcaagag ccgtgcggga actgcgatat ctgcctcgat
     3781 ccgccgaaac agtacgacgg ttcaaccgat gctcagattg ccctttccac cattggtcgt
     3841 gtgaatcagc ggtttgggat gggttatgtg gtggaagtga ttcgtggtgc taataaccag
     3901 cgtatccgcg actatggtca tgacaaactg aaagtctatg gcatgggccg tgataaaagc
     3961 catgaacatt gggtgagcgt gatccgccag ctgattcacc tcggcctggt gacgcaaaat
     4021 attgcccagc attctgccct acaactgaca gaggccgcgc gcccggtgct gcgcggcgaa
     4081 tcctctttgc aacttgccgt gccgcgtatc gtggcgctca aaccgaaagc gatgcagaaa
     4141 tcgttcggcg gcaactatga tcgcaaactg ttcgccaaat tacgcaaact gcgtaaatcg
     4201 attgccgatg aaagtaatgt cccgccgtac gtggtgttta acgacgcaac cttgattgag
     4261 atggctgaac agatgccgat caccgccagc gaaatgctca gcgttaacgg cgttgggatg
     4321 cgcaagctgg aacgctttgg taaaccgttt atggcgctga ttcgtgcgca tgtcgatggc
     4381 gacgacgaag agtagtcagc agcataaaaa agtgccagga tgaagactcc gtaaacgttt
     4441 cccccgcgag tcaaatgtat gttgatgtta tttctcaccg tcgccatggt gcacattgtg
     4501 gcgcttatga gccccggtcc cgatttcttt tttgtctctc agaccgctgt cagtcgttcc
     4561 cgtaaagaag cgatgatggg cgtgctgggt attacctgcg gcgttatggt ttgggcaggg
     4621 attgcgttgc ttggcctgca tttgattatc gaaaaaatgg cctggctgca tacgctgatt
     4681 atggttggcg gtggcctgta tctctgctgg atgggttacc agatgctacg cggtgcactg
     4741 aaaaaagagg ctgtatctgc gcctgcacca cagattgagc tggcgaaaag cgggcgcagt
     4801 ttcctgaaag gtttactgac caatctcgct aatccgaaag cgattatcta ctttggctcg
     4861 gtgttctcat tgtttgtcgg agataacgtt ggcactaccg cgcgctgggg catttttgcg
     4921 ctgatcattg tcgaaacact ggcgtggttt accgtcgttg ccagcctgtt tgccctgccg
     4981 caaatgcgcc gtggttatca acgtctggcg aagtggattg atggttttgc cggggcgtta
     5041 tttgccggat ttggcattca tttgattatt tcgcggtgat gccagacgcg tcttcagagt
     5101 aagtcggata aggcgtttac gccgcatccg acattatttt tcacgcatgc ctcgccgatg
     5161 ctaacagcgc tcccaccagc ataaacaacg agccgaaaat cttattcagc gccttcatct
     5221 gctttggtcc tttaatccat agagcaatcc gttgagcaag ggtggcgtaa ccgatcatca
     5281 caataatatc gactacaata gtggtgacgc cgagcacgat atactgcatc agttgcggct
     5341 gctgtggcat gatgaattgc ggaaatagcg ccgccagaaa cacaatactt ttgggattgg
     5401 tgagattcac aaaaactgcg cgctggaaca aatgtcgacg cgattgagta gaggccagcg
     5461 atttaaggtc aattgcacca gcggcgcgcc actgctggat tcccagccaa atcaagtaag
     5521 ccgcgcctgc ccacttcaac acttcaaacg caatcactga gcgggaaaat agcgtcccca
     5581 accccacgcc aaccagcaca atatgaatcg ccagtccggt ctgaagccca gcaatagacg
     5641 ccaccgcgcc gcgataaccg tggttgagcg aggtggtcat agtgttgatt gcaccagagc
     5701 ctggcgacag gcttaaaatg atcgatgtca gcaggtaggc aaaccaccat tctaaggtca
     5761 tgatgaactc ccggtgtgtc tatttttgtg ccacaatacg ctactgtcgc agcgttgtgt
     5821 caggcacgct aaaaaaaaaa cgattttacg tggtttaaga ggcagattac ccgatgtttc
     5881 agcagcaaaa agactgggaa acaagagaaa acgcgtttgc tgcttttacc atgggaccgc
     5941 tgactgattt ctggcgtcag cgtgatgaag cagagtttac tggtgtggat gacattccgg
     6001 tgcgctttgt ccgttttcgc gcacagcacc atgaccgggt ggtagtcatc tgcccggggc
     6061 gtattgagag ctacgtaaaa tatgcggaac tggcctatga cctgttccat ttggggtttg
     6121 atgtcttaat catcgaccat cgcgggcagg gacgttccgg tcgcctgtta gccgatccgc
     6181 atctcgggca tgttaatcgc tttaatgatt atgttgatga tctggcggca ttctggcagc
     6241 aggaggtcca gcccggtccg tggcgtaaac gctatatact ggcacattcg atgggcggtg
     6301 cgatctccac attatttctg caacgccatc caggtgtatg tgacgccatt gcgctaactg
     6361 cgccaatgtt tgggatcgtg attcgtatgc cgtcatttat ggcacggcag atcctcaact
     6421 gggccgaagc gcatccacgt ttccgtgatg gctatgcaat aggcaccggg cgctggcgcg
     6481 cgttgccgtt tgctatcaac gtactgaccc acagcagaca gcgatatcga cgtaacttac
     6541 gcttctatgc tgatgaccca acgattcgcg tcggtgggcc gacctaccat tgggtacgcg
     6601 aaagtattct ggctggcgaa caggtgttag ccggtgcggg tgatgacgcc acgccaacgc
     6661 ttctcttgca ggctgaagag gaacgcgtgg tggataaccg catgcatgac cgtttttgtg
     6721 aactccgcac cgccgcgggc catcctgtcg aaggaggacg gccgttggta attaaaggtg
     6781 cttaccatga gatccttttt gaaaaggacg caatgcgctc agtcgcgctc cacgccatcg
     6841 ttgatttttt caacaggcat aactcaccca gcggaaaccg ctctacagag gtttaaattt
     6901 cttatgtacc aggttgttgc gtctgattta gatggcacgt tactttctcc cgaccatacg
     6961 ttatcccctt acgccaaaga aactctgaag ctgctcaccg cgcgcggcat caactttgtg
     7021 tttgcgaccg gtcgtcacca cgttgatgtg gggcaaattc gcgataatct ggagattaag
     7081 tcttacatga ttacctccaa tggtgcgcgc gttcacgatc tggatggtaa tctgattttt
     7141 gctcataacc tggatcgcga cattgccagc gatctgtttg gcgtagtcaa cgacaatccg
     7201 gacatcatta ctaacgttta tcgcgacgac gaatggttta tgaatcgcca tcgcccggaa
     7261 gagatgcgct tttttaaaga agcggtgttc aaatatgcgc tgtatgagcc tggattactg
     7321 gagccggaag gcgtcagcaa agtgttcttc acctgcgatt cccatgaaca actgctgccg
     7381 ctggagcagg cgattaacgc tcgttggggc gatcgcgtca acgtcagttt ctctacctta
     7441 acctgtctgg aagtgatggc gggcggcgtt tcaaaaggcc atgcgctgga agcggtggcg
     7501 aagaaactgg gctacagcct gaaggattgt attgcgtttg gtgacgggat gaacgacgcc
     7561 gaaatgctgt cgatggcggg gaaaggctgc attatgggca gtgcgcacca gcgtctgaaa
     7621 gaccttcatc ccgagctgga agtgattggt actaatgccg acgacgcggt gccgcattat
     7681 ctgcgtaaac tctatttatc gtaatcgttc tttatttggt cagttgtcaa cctgatactt
     7741 cgctacaatg gatactcgtt aatcaaagag ttttccattg tggcgctact tatcatcacc
     7801 acgattctgt gggccttctc ctttagcttt tatggcgagt accttgcggg gcacgtcgat
     7861 agctattttg cggtgctggt gcgcgttggc ctggcggcac tcgtttttct gccgtttctg
     7921 cgtacccgtg gcaatagcct gaaaacagtc ggcctgtata tgctggtggg cgcgatgcag
     7981 ctcggcgtga tgtatatgct gagtttccgc gcttatctct atctgacggt ttccgaactg
     8041 ctgctgttca ccgtactgac gccgctctac atcacgctga tttatgacat catgaataag
     8101 cgccgtttgc gctggggata tgcttttagt gccttgttgg cggtgattgg tgccgggatt
     8161 attcgctatg atcaggtcac cgaccatttc tggactggct tgttgctggt gcaactctcc
     8221 aatatcactt ttgccatcgg catggtgggt tacaaacgcc tgatggaaac tcgcccgatg
     8281 ccgcagcata acgcctttgc gtggttctat cttggcgcgt tcctggtggc ggtaattgca
     8341 tggttcttgc tgggaaatgc gcagaaaatg ccgcaaacca cgttgcaatg gggcattctg
     8401 gtgtttcttg gcgtggtggc ttccgggatt ggctacttta tgtggaacta cggcgcgacg
     8461 caggtggacg ccggaacgct gggaattatg aataatatgc acgttccggc agggctgctg
     8521 gtaaacctgg ctatctggca ccaacagccg cactggccaa cgtttattac aggcgcgctg
     8581 gtgatcctgg cctcactgtg ggtgcatcgt aagtgggtcg ctccgcgctc ttcacaaacg
     8641 gcagatgatc gcaggcgtga ttgcgcgctg agcgaataaa cgcttccgta actggctgac
     8701 gctgctcgcc atcgcgcacg gcggcgtaca gtcggctcca caagccttcg cccagggttt
     8761 tggtcaccac cagaccctgg cgctcaaaac tctctactac ccaatgcggt agcgcggcaa
     8821 tacccatccg cgcggcaacc atctgaatca acaataaggt gttatcgacg cttttcagtg
     8881 acggactgac gcctgccggc tgaagaaaat gccgccagac atccagtcga ctacgctgca
     8941 ccggataaat taatagcgtc tcgttggcga gatcttccgg tgtaatacgc gtttttgccg
     9001 ccagtggatg gtcaggtgct aacaccagac gcacttcata gtcgaacatc ggcgaataat
     9061 gcagaccact gcgcggcaga atatcggacg tcattaccag atccagctct ccctgttgca
     9121 aggcgggctg cgggtcaaat gtcacgcccg atttaaagtc catctcgacc tgcggccagt
     9181 tcttatggaa attttctaac gcgggcgtca gccactgtat acagctatgg cactcaatgg
     9241 caatgcgcag acgcgtctgc tgcggttcat tgcaggcttg cagtgcctgg ctaatttgtg
     9301 gcagcacctg gtttgccagt tgcaacagga tttctccctg cggtgtaaag cgaagcggct
     9361 ggcttttacg cacaaatagc cggaagccaa ggcgttgttc cagatcgcta aactggtgag
     9421 acagggcgga ttgcgtctga tgcaacgtcg ccgcagcggc tgcgagtgag ccgcagttcc
     9481 gcaacgcttg tagcgttttc agatgtttta cttcgatcat gaaagtcctt cacttcggca
     9541 tgaataattt gcgcttgagg aatatacagt aaccgccaat tatggatgtg taaacatctg
     9601 gacggctaaa atccttcgtc ttttaaattt atggtgcgtt ggctgcgttt ctccaccccg
     9661 gtcacttact tcagtaagct cccggggatg aataaacttg ccgccttccc taaattcaaa
     9721 atccatagga tttacatata attagaggaa gaaaaatgac aatattgaat cacaccctcg
     9781 gtttccctcg cgttggcctg cgtcgcgagc tgaaaaaagc gcaagagagt tattgggcag
     9841 ggaactccac gcgtgaagaa ctgctggcgg tagggcgtga attgcgtgct cgtcactggg
     9901 atcaacaaaa gcaagcgggt atcgacctgc tgccggtggg cgattttgcc tggtacgatc
     9961 atgtactgac caccagtctg ctgctgggta acgttccggc gcgtcatcag aacaaagatg
    10021 gttcggtaga tattgacacc ctgttccgta ttggtcgtgg acgtgcgccg actggcgaac
    10081 ctgcggcggc agcggaaatg accaaatggt ttaacaccaa ctatcactac atggtgccgg
    10141 aattcgttaa aggccaacag ttcaaactga cctggacgca gctgctggag gaagtggacg
    10201 aggcgctggc gctgggccac aacgttaagc ctgtgctgct ggggccggtt acctggctgt
    10261 ggctggggaa agtgaaaggt gaacagtttg accgcctgag cctgctgaac gacattctgc
    10321 cggtttatca gcaagtgctg gcagaactgg agaaacgcgg catcgagtgg gtacagattg
    10381 atgaacccgc gctggtactg gaactaccac aggcgtggct ggacgcatac aaacccgctt
    10441 acgacgcgct ccagggacag gtgaaactgc tgctgactac ctattttgaa ggcgttacgc
    10501 caaatctcga cacgattact gcgctgcctg ttcagggact gcatgtggac cttgtacatg
    10561 gtaaagatgg cgttgctgaa ctgcacaagc gcctgccttc tgactggctg ctgtctgcgg
    10621 gactgatcaa tggtcgtaac gtctggcgcg ccgatcttac tgagaaatat gcgcaaatta
    10681 aggacattgt cggcaaacgt gatttgtggg tggcatcttc ctgctcgttg ctgcacagcc
    10741 ccatcgacct gagcgtggaa acgcgtcttg atgcagaagt gaaaagctgg tttgccttcg
    10801 ccttacaaaa atgccatgaa ctggcactgc tgcgcgatgc gctgaaaagt ggtgacacgg
    10861 cagctctggc agagtggagc gccccaattc aggcgcgtcg tcactctact cgtgtacata
    10921 atccggcggt agaaaagcgt ctggcggcga tcaccgccca ggacagccag cgtgcgaatg
    10981 tctatgaagt gcgtgctgaa gcccagcgtg cgcgttttaa actgccagcg tggccgacca
    11041 ccacgattgg ttccttcccg caaaccacgg aaattcgtac cctgcgtctg gatttcaaaa
    11101 agggcaatct cgacgccaac aactaccgca cgggcattgc ggaacatatc aagcaggcca
    11161 ttgttgagca ggaacgtttg ggactggatg tgctggtaca tggcgaggcc gagcgtaatg
    11221 acatggtgga atactttggc gagcacctcg acggatttgt ctttacgcaa aacggttggg
    11281 tacagagcta cggttcccgc tgcgtgaagc caccgattgt tattggtgac gttagtcgcc
    11341 cggcaccgat taccgtggag tgggcgaagt atgcgcaatc tctgactgat aaaccggtga
    11401 aagggatgct gactggcccg gtgaccattc tctgctggtc gttcccgcgt gaagatgtca
    11461 gccgtgaaac catcgccaaa caaattgcgc tggcgctgcg tgatgaagtg gcggacctgg
    11521 aagccgcagg aattggcatc atccagattg atgaaccggc gctgcgcgaa ggtttaccgc
    11581 tgcgtcgtag cgactgggat gcatatctcc agtggggcgt ggaggccttc cgtatcaacg
    11641 ccgccgtggc gaaagatgac acacaaatcc acactcacat gtgttattgc gagttcaacg
    11701 acatcatgga ttccattgcg gcactggatg cagacgtcat caccatcgaa acctcgcgtt
    11761 ccgacatgga gttgctggag tcgtttgaag agtttgatta tccgaatgaa atcggtccag
    11821 gcgtctatga cattcactcg ccaaacgtac cgagcgtaga atggattgaa gccttgctga
    11881 agaaagcggc aaaacgcatt ccggcagagc gcctgtgggt caacccggac tgtggcctga
    11941 aaacgcgcgg ctggccagaa acccgcgcgg cactggcgaa catggtgcag gcggcgcaga
    12001 atttgcgtcg gggatgatga atattaacga gtcactgtaa attgcagtac gatgaaagag
    12061 gcaaaactgc ctgataccag gcctacataa tttatgcaat ttattgaatt tttgagtttt
    12121 gttggccgga caaggcgttc acgccgcatc cggcatgaac aacgcgcact ttgccaataa
    12181 tctgatggct tccatcaccg gaagccattt tgctatctgc gcccgttcag atacagaaat
    12241 aaccgaatca tttttacgca aaatataatc ctgagcgatt tgttcagtaa tcaacgctac
    12301 gttatttatt ctcacttttc acgaaattgt atcccttttc agtaacgtgg tagtgaggca
    12361 tagacttatg tccgctatcc tcaataataa ccaaaccctc gttagctaat ttgttaacaa
    12421 tgttaacaac attaccgaat cctggaattt gccttatgga tagtgtgcga tcgagattca
    12481 tccagttcca gtttatatct ttctcagcca taactttcag tacgttaatt tcagtttcag
    12541 ttatcatagt caagtgcatc ctggtggtat aagtcattaa gttctccctt aagtttataa
    12601 tcttctagag tagcagtatg cgtatgattc cagagtgcat agcctgcgtc accatcaggt
    12661 tgtcctgttt cccaaccaag attacagtaa cgctgatatt cccgacactc atgagtatag
    12721 aag
//
LOCUS       DADMHM010000119        12543 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.120, whole genome shotgun sequence.
ACCESSION   DADMHM010000119 DADMHM010000000
VERSION     DADMHM010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 12543)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12543)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12543
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.120"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(234..1574)
                     /gene="fadL"
                     /locus_tag="JN125_002781"
     CDS             complement(234..1574)
                     /gene="fadL"
                     /locus_tag="JN125_002781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708225.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain fatty acid transporter FadL"
                     /protein_id="HAY8872512.1"
                     /translation="MSQKTLFTKSALAVAVALISTQAWSAGFQLNEFSSSGLGRAYSG
                     EGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTA
                     WVPNMHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYR
                     LNNAWSFGLGFNAVYARAKIERFAGDLGQLVAGQIMQSPAGQTPQGQALAATANGIDS
                     NTKIAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYG
                     LPIPTATGGATQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATST
                     SGNTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRF
                     WLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAF"
     gene            1946..2230
                     /locus_tag="JN125_002782"
     CDS             1946..2230
                     /locus_tag="JN125_002782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF406 family protein"
                     /protein_id="HAY8872513.1"
                     /translation="MSKCSADETPVCCCMDVGTIMDNSDCTASYSRVFANRAEAEQTL
                     AALTEKARSVESEPCKISPTFTEESDGVRLDIDFTFACEAEMLIFQLGLR"
     gene            2410..3720
                     /gene="fadI"
                     /locus_tag="JN125_002783"
     CDS             2410..3720
                     /gene="fadI"
                     /locus_tag="JN125_002783"
                     /EC_number="2.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acyltransferase FadI"
                     /protein_id="HAY8872514.1"
                     /translation="MGQVLPLVTRQGDRIAIVSGLRTPFARQATAFHGIPAVDLGKMV
                     VGELLARSEIPAEVIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATS
                     FQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKKLARVLVDVNKARTMSQRLKLF
                     SRLRLRDLMPVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWS
                     DGKLKEEVMTAFIPPYKQPLVEDNNIRGNSSLADYAKLRPAFDRKHGTVTAANSTPLT
                     DGAAAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDMLFGPAWSTPLALERAGLTM
                     SDLTLIDMHEAFAAQTLANIQLLGSERFAREVLGRAHATGEVDDSKFNVLGGSIAYGH
                     PFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLEAE"
     gene            3720..5864
                     /gene="fadJ"
                     /locus_tag="JN125_002784"
     CDS             3720..5864
                     /gene="fadJ"
                     /locus_tag="JN125_002784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid oxidation complex subunit alpha FadJ"
                     /protein_id="HAY8872515.1"
                     /translation="MEMASAFTLNVRLDNIAIITIDVPDEKMNTLKAEFASQVRAIIK
                     QLRENKELRGVVFISAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEIHALPI
                     PVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIG
                     VSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEVAVELAKKDRPSSRPLPVRERI
                     LAGPLGRALLFKMVGKKTEHKTQGNYPATERILEVVETGLAQGTSSGYDAEARAFGEL
                     AMTPQSQALRSIFFASTDVKKDPGSDAPPAPLNSVGILGGGLMGGGIAYVTACKAGLP
                     VRIKDINPQGINHALKYSWDQLEGKVRRRHLKASERDKQLALISGTTDYRGFAHRDLI
                     IEAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVIGLHFFSP
                     VEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIR
                     MLTKGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGERFSAPANVV
                     SSILNDDRKGRKNGRGFYLYGQKGRKSKKQVDPAIYPLIGAQGQGRLSAPQVAERCVM
                     LMLNEAVRCVDEQVIRSVRDGDIGAVFGIGFPPFLGGPFRYIDSLGAGEVVAIMQRLA
                     TQYGSRFTPCERLVEMGARGESFWKTTATDLQ"
     gene            6067..6552
                     /gene="sixA"
                     /locus_tag="JN125_002785"
     CDS             6067..6552
                     /gene="sixA"
                     /locus_tag="JN125_002785"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohistidine phosphatase SixA"
                     /protein_id="HAY8872516.1"
                     /translation="MQVFIMRHGDAALDAASDSVRPLTTNGCDESRLMANWLKGQKVE
                     IERVLVSPFLRAEQTLEEVGDCLNLPSSAEVLPELTPCGDVGLVSAYLQALTNEGVAS
                     VLVISHLPLVGYLVAELCPGETPPMFTTSAIASVTLDESGNGTFNWQMSPCNLKMAKA
                     I"
     gene            7227..7487
                     /locus_tag="JN125_002786"
     CDS             7227..7487
                     /locus_tag="JN125_002786"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HAY8872517.1"
                     /translation="MSKFVKTAIAAAMVMGVFTSTATIAAGNNGTARFYGTIEDSVCS
                     IVPDDHKLEVDMGDIGAEKLKNNGTTTPKSFQIRLQDCVFDT"
     gene            7494..7790
                     /locus_tag="JN125_002787"
     CDS             7494..7790
                     /locus_tag="JN125_002787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HAY8872518.1"
                     /translation="MTTTFTGTVSSANSGNYYTIFNTDTGAAFNNVSLAIGDSLGTSY
                     KSGMGIDQKIVKDTSTNKGKAKQTLNFKAWLVGAADAPDLGNFEANTTFQITYL"
     gene            7872..10514
                     /gene="yfcU"
                     /locus_tag="JN125_002788"
     CDS             7872..10514
                     /gene="yfcU"
                     /locus_tag="JN125_002788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001112832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial usher protein YfcU"
                     /protein_id="HAY8872519.1"
                     /translation="MPDHSLFRLRILPWCIALAMSGSYSSVWAEDDIQFDSRFLELKG
                     DTKIDLKRFSSQGYVEPGKYNLQVQLNKQPLAEEYDIYWYAGEDDASKSYACLTPELV
                     AQFGLKEDVAKNLQWSHDAKCLKSGQLEGMEIKADLSQSALVISLPQAYLEYTYPDWD
                     PPSRWDDGISGIVADYSINAQTRHEENGGDDSNEISGNGTVGVNLGPWRMRADWQTNY
                     QHTRSNDDDEFSGDETQKKWEWSRYYAWRALPSLKAKLALGEDYLRSDIFDGFNYVGG
                     SVSTDDQMLPPNLRGYAPDISGVAHTTAKVTVSQMGRVIYETQVPAGPFRIQDLGDSV
                     SGTLHIRIEEQNGQVQEYDISTASMPYLTRPGQIRYKIMMGRPQEWGHHVEGEFFSGA
                     EASWGIANGWSLYGGALGDENYQSAALGVGRDLSTFGAVAFDVTHSHTKLDKDTAYGK
                     GSLDGNSFRVSYSKDFDQLNSRVTFAGYRFSEENFMTMSEYLDASDSGMVRTGNDKEM
                     YTATYNQNFRDAGVSVYLNYTRHTYWDREEQINYNIMLSHYFNMGSIRNVSISMTGYR
                     YEYDNQADKGMYISLSMPWGDNSTVSYNGNYGSGTDSSQVGYFSRVDDATHYQLNVGT
                     SDKHTSVDGYYSHDGSLAQVDLSANYHEGQYTSAGLSLQGGATLTAHGGALHRTQNMG
                     GTRLLIDADGVADVPVEGNGAAVYTNMFGKAVVSDVNNYYRNQAYIDLNRLPENAEAT
                     QSVVQATLTEGAIGYRKFAVISGQKAMAVLRLSDGSHPPFGAEVKNDNEQTVGLVDDD
                     GNVYLAGVKPGEHMSVFWSGVAHCDINLPDPLPADLFNGLLLPCQHKGNVAPITSPAV
                     KPAIQEQTQRVTPTEPPTSISVNQ"
     gene            10534..11286
                     /locus_tag="JN125_002789"
     CDS             10534..11286
                     /locus_tag="JN125_002789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000482750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus periplasmic chaperone"
                     /protein_id="HAY8872520.1"
                     /translation="MFNLTNTAKIVVPALALLATAVSFSSHASVTPDRTRLVFNESDK
                     SISVTLRNNDPTLPYLAQSWIEDAKGNKISSPLAVLPPVQRIDAMMNGQVKVQGLPDI
                     NKLPADRESVFYFNVREIPLKSNKPNTLQIALQTRIKLFWRPKALENTSMKSPWQHKV
                     TLIRNGQDFTVNNPTPYYVIISNASAKKGGNPPAGFTPLMMEPKTSAPLNAKMDSVPV
                     LTYINDYGARMPLYFKCTGNSCQVDEEQSRKG"
     gene            11302..11811
                     /locus_tag="JN125_002790"
     CDS             11302..11811
                     /locus_tag="JN125_002790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001733155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HAY8872521.1"
                     /translation="MSHKFVAGAGLLVLAGWGISGLAVAGSDIKQVDLTLRILVDGPP
                     PCSVKGSAVKFGNVIINRIDGTNYQQDAKYTLNCGNKVSDDLRMQLKGNTAVINGETV
                     LSTDIAGLGVRIENAADNSLFAVGENNWTPFNVNTQPQLKAVPVKQSGVQLTPSEFNA
                     TMTMVVDYQ"
     gene            11808..12296
                     /locus_tag="JN125_002791"
     CDS             11808..12296
                     /locus_tag="JN125_002791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001709066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HAY8872522.1"
                     /translation="MKKFLLLLLCAGCGAVLAAEDDITFHGTLMSPPACSISGGQTIE
                     VQFRDLIIDSIDGNYGRQKVDYELSCDSDVRDPEWNMTLSWTGTATSYNDSAIETDVP
                     GFGIELQHDGQRFKLNEPLSINATDFSQKPKLEAVPVKAADAVLTDTTFSAYATLRVD
                     YQ"
     gene            12293..>12543
                     /locus_tag="JN125_002792"
     CDS             12293..>12543
                     /locus_tag="JN125_002792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016242288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HAY8872523.1"
                     /translation="MKTAHIYSPGYALLAGLLLTASTGAQAVDNNLHFYGNLLSKSCT
                     LVVDGANLAEIHFPTVSNRDLMVSGQSAHLPVVFKLKDC"
BASE COUNT         3159 a         2989 c         3329 g         3066 t
ORIGIN      
        1 gtatcctgga aatgcagaaa agtaaactct ttgagaagga cgagcagaac gcctgaaaat
       61 atgcctttcc cttcaggttt gtctgtggat accgcttatt gatttgaaag ggcaagctgc
      121 caacaggctg tttgcaaaac tcaggaggta agcaatgagg acactacttt cggtgaagtg
      181 ggggagttaa agtcacctgc tatgcaggtg actttatcca ggcgaacgcg ttatcagaac
      241 gcgtagttaa agttagtacc gaacagccag gctttacctt cagactcgaa ctggtatggg
      301 ccttcgttaa ttttcacgct ctgaccgtgc atataagaaa caccaacgtc gactgaagca
      361 tctttattaa atgcgtaagt cgtacctgca ctcagccaga aacggtcctg gtccggaatg
      421 gagatagaac gattctgagc cggaactggg ctgtcatcaa aggcgatacc ggtacggaag
      481 gtccagttat catcgtagta ataagtggta cccaacgcga tgcggtaagc atctttaaag
      541 ccttcatgtt tctggaacag cgtgttgcca ctggttgagg tcgctttcag ctgctggaac
      601 tgactccagc tggtgtaagc caggctatag tgaatcgccc actgtggatc aacacggtta
      661 taacctgaca cttcccacat ttcaggcagg ttcagcgtca gataacccga ttgcgttgcg
      721 ccacctgtcg cggtaggaat tggcaaaccg tagttattaa acgcacgatt aagatcgctg
      781 ctgtagttac ctttgaagtc aattttcact tcagaacggt aggtcagtgc atagcggtta
      841 tttttatcca gttcatacag gattccggcg ttccagccaa agccccactg gttaccgttc
      901 agatgagcga ttttggtatt actgtcgata ccgttggcgg tagctgccaa tgcttgccct
      961 tgaggagttt gcccggcagg agattgcata atctgaccag caaccaactg ccccagatcg
     1021 cctgcgaaac gttcaatttt cgcgcgagcg tagacggcgt tgaaaccaag accaaagctc
     1081 catgcattat ttaagcgata cgcaccgctt aagttcaggt tcatggtttc aaggtcagtt
     1141 gtacccccga cagagccgcc tgcataagta tcattaaact ctgttgccag accatagtta
     1201 gaggtaatag aagcgcccca accaaattgg tcgttaatcg gtgcaacaaa gtgcatgttc
     1261 ggaacccatg ccgtaggcgc gatgttatcg gctttcaggc tacgaccaga cggagacgtt
     1321 ccgctgatat tcacatccgg gtcaatataa accgcacccg cagaaaatgt cgggcggtca
     1381 aacatggtaa tcaatgcggg gttacggcta acgttacctg catcatcggc aattgcgcct
     1441 tcccctgaat aagcccggcc caggccagag gaagaaaatt cgtttaactg aaagcctgcc
     1501 gaccaggcct gggtggagat aagtgccact gcgactgcga gagcagactt tgtaaacagg
     1561 gttttctggc tcatgaccat aacctcaatg atttattttt atacaaacta tgttacgtgc
     1621 tgtaacagga gcgcgaagtg tagggtctga ggtacatctt agaaatcaga ccagtggcga
     1681 gagtataggt cggaccagct ggaatgttgc aagtatgttt ccatcttttt tcaaatatga
     1741 tctaagaaac gcgatccagc tggcaaaatt tggaggttgc gcactcgcgg attcgggtga
     1801 attttgtttt agagcatttt taagtgtgat ttcggtcact tatccgattt tgcagaatta
     1861 acaactggag cagcactttc cggaagcgta aaatatccac aacgtttatc tggcaccttg
     1921 ggtgcacata cagaggaaat caacgatgag taaatgtagt gctgatgaaa ccccggtttg
     1981 ctgctgtatg gatgttggca ccattatgga caactccgac tgcaccgcgt cttacagccg
     2041 cgtgtttgca aaccgcgcag aagcagaaca aacgctggcg gcgttgactg aaaaagcccg
     2101 tagcgtggaa tccgaaccgt gcaaaatctc cccgactttc actgaagagt ctgacggtgt
     2161 gcgcctggat atcgatttca cttttgcctg cgaagctgaa atgctgatct tccagctggg
     2221 tctgcgttaa ttcctctcgg gtacgttcgc ccctgtcagt tgctggcagg ggcgttttct
     2281 tttctttctc ctgtcttcac tgtgtcatag ctcccacttt cctttttctc cgcttggcta
     2341 aatgtaaaaa aatggttaag actatgatca ggtcagacca ctttatttat ttttttacag
     2401 gggagtgtta tgggtcaggt tttaccgctg gttacccgcc agggcgatcg tatcgccatt
     2461 gttagcggtt tacgtacgcc ttttgcccgc caggcgacgg cttttcatgg cattcccgcg
     2521 gttgatttag ggaagatggt ggtaggcgaa ctgctggcac gcagcgagat ccccgctgaa
     2581 gtgattgaac agctggtctt tggtcaggtc gtacaaatgc ctgaagcccc caacattgcg
     2641 cgtgaaattg ttctcggtac cggaatgaat gtgcataccg atgcttacag cgtcagccgc
     2701 gcttgcgcta ccagtttcca ggcggttgca aacgtcgcag aaagcctgat ggcgggaact
     2761 atccgagcgg ggattgccgg tggggcagat tcctcttccg tattgccaat tggcgtcagt
     2821 aaaaaactgg cgcgcgtgct ggttgatgtc aacaaagctc gaaccatgag ccagcgcctg
     2881 aaactcttct ctcgcctgcg tttgcgcgat ttaatgcccg taccgcctgc agtagcagaa
     2941 tattctaccg gcttgcggat gggtgacacc gcagagcaaa tggcgaaaac ctacggcatc
     3001 acccgagaac agcaagatgc attagcgcac cgttcgcatc agcgtgccgc tcaggcatgg
     3061 tcagacggaa aactcaaaga agaggtgatg actgccttta tccctcctta taaacaaccg
     3121 cttgtcgaag acaacaatat tcgcggtaat tcctcgcttg ccgattacgc aaagctgcgc
     3181 ccggcgtttg atcgcaaaca cggaacggta acggcggcaa acagtacgcc gctgaccgat
     3241 ggcgcggcag cggtgatcct gatgactgaa tcccgggcga aagaattagg gctagtgccg
     3301 ctggggtatc tgcgcagcta cgcatttact gcgattgatg tctggcagga catgttgttc
     3361 ggtccggcct ggtcaacacc gctggcgctg gaacgtgccg gtttgacaat gagcgatctg
     3421 acattgatcg atatgcacga agcctttgca gctcagacac tggcgaatat tcagttgctg
     3481 ggtagtgaac gttttgctcg tgaagtactg gggcgtgcac atgccactgg cgaagtggac
     3541 gatagcaaat ttaacgtgct tggcggttcg attgcttacg ggcatccctt cgcggcgacc
     3601 ggcgcgcgga tgattaccca gacattgcat gaacttcgcc gtcgcggcgg tggatttggt
     3661 ttagttaccg cctgtgctgc cggtgggctt ggcgcggcaa tggttctgga ggcggaataa
     3721 tggaaatggc atcagcgttt actcttaatg ttcgtctgga caacattgct atcatcacca
     3781 tcgacgtacc ggatgagaaa atgaataccc tgaaggcgga atttgcctcg caggtgcgcg
     3841 ccattattaa gcaactccgt gaaaacaaag agttgcgcgg cgtggtgttt atctccgcga
     3901 aaccggacaa ttttatcgcc ggagcagaca tcaacatgat cggcaactgc aaaacggcgc
     3961 aagaagcgga agctctggcg cggcagggcc aacagttgat ggcggagatt catgctttgc
     4021 ccattccggt tatcgcggct attcatggcg cttgcctggg tggtgggctg gagttggcgc
     4081 tggcgtgcca cggtcgcgtt tgtactgacg atcctaaaac ggtgctcggt ttgcctgaag
     4141 tacaacttgg attgttaccc ggttcaggcg gcacccagcg tttaccgcgt ctgataggcg
     4201 tcagcacagc attagagatg atcctcaccg gaaaacaact tcgggcgaaa caggcattaa
     4261 agctggggct ggtggatgac gttgttccgc actccatttt gctggaagtc gctgttgagc
     4321 tggcgaagaa ggatcgccca tcttcccgcc ctctacctgt acgcgagcgt attctggcgg
     4381 ggccgttagg tcgtgcgctg ctgttcaaaa tggtcggcaa gaaaacagaa cacaaaactc
     4441 aaggcaatta tccggcgaca gaacgtatcc tggaggttgt tgaaacggga ttagcgcagg
     4501 gcaccagcag cggttatgac gccgaagctc gggcgtttgg cgaactggcg atgacgccac
     4561 aatcgcaggc gctgcgtagt atcttttttg ccagtacgga cgtgaagaaa gatcccggta
     4621 gtgatgcacc gcctgcgcca ttaaacagcg tgggaatttt aggtggtggc ttgatgggcg
     4681 gcggtattgc ttatgtcact gcttgtaaag cggggcttcc ggtcagaatt aaagatatca
     4741 acccgcaggg cataaatcat gcgctgaagt acagttggga tcagctggag ggcaaagttc
     4801 gccgtcgtca tctcaaagcc agcgaacgtg acaaacagct ggcattaatc tccggaacga
     4861 cggactatcg cggctttgcc catcgcgatc tgattattga agcggtgttt gaaaatctcg
     4921 aattgaaaca acagatggtg gcggaagttg agcaaaattg cgccgctcat accatctttg
     4981 cttcgaatac gtcatcttta ccgattggtg atatcgccgc tcacgccacg cgacctgagc
     5041 aagttatcgg cctgcatttc ttcagtccgg tggaaaaaat gccgctggtg gagattattc
     5101 ctcatgcggg tacatcagcg caaaccatcg ccactacggt aaaactggcg aaaaaacagg
     5161 gcaaaacgcc cattgtcgtg cgtgacaaag ccgggtttta cgtcaatcgc atcttagcgc
     5221 cttacattaa tgaagctatc cgcatgctga ccaaaggtga acgggtagag cacattgatg
     5281 ccgcgctagt gaaatttggt tttccggtag gtccaatcca acttttggat gaggtaggaa
     5341 tcgacaccgg gactaaaatt attcctgtac tggaagccgc ttatggagaa cgttttagcg
     5401 cgcctgcaaa tgttgtttct tcaattttga acgatgatcg caaaggcaga aaaaatggtc
     5461 ggggtttcta tctttatggt cagaaagggc gtaaaagcaa aaaacaggtc gatcccgcca
     5521 tttacccgct cattggcgca caagggcagg ggcgactctc cgcaccgcag gttgctgaac
     5581 ggtgtgtgat gttgatgctg aatgaagcag tacgttgtgt tgatgagcag gttatccgta
     5641 gcgtgcgtga cggggatatt ggtgcggtat ttggcattgg ttttccgcca tttctcggtg
     5701 gaccgttccg ctatatcgat tctctcggcg cgggcgaagt ggttgcaata atgcaacgac
     5761 tggccacgca gtatggttcc cgttttaccc cttgcgagcg tttggtcgag atgggcgcgc
     5821 gtggggaaag tttttggaaa acaactgcaa ctgacctgca ataagaaggt caaagctata
     5881 tgaatccgcg ctgaatggcg gagtattggt caaaatgtaa acgcatattg actatactta
     5941 cgccattgag gtaaaaaaca gcgtttcatt cggtgaatgg ataaggcaca atgccggcca
     6001 ccgttttctt tctctggttt cagatgaaag aaaatgggcg aatctggtta acaaaagcgg
     6061 tgcaatatgc aagtttttat catgcgtcac ggcgacgcag ccctcgatgc cgccagtgat
     6121 tcggttcgtc ctctgaccac taatggttgt gacgaatctc gcctgatggc gaactggctg
     6181 aaaggtcaaa aagtggaaat cgaacgcgtt ctggtgagcc cgttcctgcg agccgagcaa
     6241 acactggaag aagtagggga ttgtctgaac ctgccttcca gtgcagaagt tctgccggag
     6301 ttaacgccct gcggcgatgt tggtctggtc agtgcctatt tgcaggcgtt gaccaatgaa
     6361 ggtgttgctt cggtactggt gatctctcac ttaccgttag tcgggtatct ggttgccgag
     6421 ttatgtccgg gcgaaacgcc gcctatgttt accacctcgg ccattgccag cgtaacgctt
     6481 gatgaaagcg gaaacggtac attcaactgg cagatgagcc cgtgtaatct gaagatggca
     6541 aaagctatct gatgtgttcc aaattatgcc caatgaggta gattcattgg gcataattgc
     6601 tcatcaggca gcggatatct gtcaacctca ctactatcga agactctcct tatctataaa
     6661 taaaacactt tctacattca ttcggaaatt attcttctgc gcgtatcttg attttgccca
     6721 aagttacatg ttgaaatgaa taatgtctgt ttgacactca ttgtcattta ttaatacaga
     6781 taatagagtt gaataatcag gcaggatgta attgaaactt gattaaattc tggctatagt
     6841 gtttatatat tatattgtca aaagtggata aatgccaatc gcattatatg ttcattgttt
     6901 gttttttaag ctgttgatat tcattattga tatactttct attttttcta aatacttatt
     6961 ccgtattttt taaggatgtc cttaagataa tctttcttct gtcaatatat taattaaatc
     7021 tacatttact ctttagtaaa attaaattgc atcaggggtg tggaaacatc actatgcggc
     7081 cccacaccaa cgaatacaat tttctacgac ctgttctttt tggatcgcat gccgtattca
     7141 atggctgggt ataaacattg gctattgact gaatcaatgt attgcaatgt ttatattttt
     7201 aattatttat agtttaagga caaataatga gtaagtttgt taaaacagct attgctgcgg
     7261 caatggtgat gggcgtgttc acctctacgg caacaatcgc tgcgggtaac aacggtactg
     7321 cacgttttta cggcaccatt gaagactcag tgtgttctat cgttccggac gatcacaaac
     7381 tggaagttga tatgggtgat atcggtgccg aaaaactgaa aaataacggc accaccacgc
     7441 cgaaaagttt ccagattcgt ctgcaagatt gcgtatttga tacttaggaa acaatgacca
     7501 ctacctttac aggtaccgtt tcttctgcaa atagcggcaa ttattacacc attttcaata
     7561 ccgataccgg tgcggcattt aacaatgtta gcctggcgat cggtgactct ctgggtacct
     7621 cttacaaaag cggcatgggt attgaccaga aaatagtgaa agacacttct actaataaag
     7681 gcaaagcgaa gcagacactg aactttaaag cctggctggt cggcgcagct gatgcgccag
     7741 atctgggtaa tttcgaagca aataccacct tccagattac ttacctgtaa ggcatacccc
     7801 catagcgaca ctgctatggg ggatttaaat ggattttgac cgaacaagaa taaaaacgga
     7861 tagaaacgtg tatgcctgac cattctcttt ttcgattacg gattcttccg tggtgcattg
     7921 cgctggcaat gtcagggagt tatagcagtg tctgggctga agacgacatt cagtttgatt
     7981 cccgttttct ggaattaaaa ggcgacacaa aaattgatct gaagcgtttt tccagccagg
     8041 gatatgttga gcccggaaaa tacaatttac aggttcaact aaataaacag ccattggcgg
     8101 aagagtacga tatttactgg tatgctggtg aagatgacgc gagcaaaagc tatgcttgtc
     8161 tgacaccgga actggtagcg cagtttggtt taaaagaaga cgtggcgaaa aatctgcaat
     8221 ggagccacga tgctaaatgc ctgaaatccg gtcaactgga aggcatggaa attaaggctg
     8281 atttaagcca gtccgcatta gtcatttcac tgccacaggc ttacctcgaa tatacttatc
     8341 ccgactggga tccgccttca cgttgggatg acggcatctc cgggatcgtc gcggactaca
     8401 gcatcaacgc acaaacccgg cacgaagaaa atggcggtga tgatagtaac gagatcagcg
     8461 gcaacgggac ggtcggggtt aacctggggc cgtggcgtat gcgtgctgac tggcagacta
     8521 actatcaaca tactcgcagt aatgatgacg atgaattcag cggcgatgaa actcaaaaaa
     8581 aatgggagtg gagtcgctac tatgcctggc gggcgttacc atcattaaaa gccaaactgg
     8641 cgctgggcga ggattacctc agatccgata tttttgatgg ttttaactat gttggtggca
     8701 gtgtcagtac tgacgatcaa atgttgcctc ccaatctgcg cggctacgcg ccagacattt
     8761 ccggcgtggc acacaccaca gcaaaagtga ccgtcagcca gatggggcgt gtgatttacg
     8821 aaacgcaggt tccggctgga ccgtttcgta ttcaggatct tggtgattct gtctccggta
     8881 cgttgcatat tcgcattgaa gaacagaacg gccaggtgca ggaatatgac atcagcaccg
     8941 cctcgatgcc atacctcact cgtccaggtc agattcgcta taagatcatg atgggccgtc
     9001 cgcaagagtg gggacaccat gtcgagggtg aatttttttc tggtgctgaa gcttcctggg
     9061 ggatcgctaa cggctggtcg ttatatggcg gcgcactggg agatgaaaac tatcagtctg
     9121 cggcgcttgg cgtcggtcgc gatttgtcta cattcggcgc ggtcgcgttt gatgttactc
     9181 actcgcacac caaactggat aaagacaccg cttatggcaa aggttcgctg gacggtaact
     9241 ccttccgtgt gagttattcc aaagactttg accagctcaa cagccgcgtt acttttgctg
     9301 gatatcgctt ctcggaagag aactttatga ccatgagcga gtatctggat gccagtgaca
     9361 gcggaatggt acgcacgggc aacgacaaag agatgtacac cgccacttat aaccagaact
     9421 tccgcgatgc gggtgtttcg gtttatctca actatacccg ccatacctac tgggatcgcg
     9481 aggagcagat aaactacaac atcatgctct cgcactattt caatatgggc agtattcgta
     9541 atgtcagcat ctcgatgact ggctaccgtt acgagtatga caaccaggcc gacaaaggca
     9601 tgtacatttc gctcagtatg ccgtggggcg acaacagtac cgttagctat aatggtaact
     9661 atggcagtgg gacggacagc agtcaggtcg gttatttcag ccgtgtcgat gacgcgactc
     9721 actatcagtt gaacgtcggc accagtgaca aacacaccag cgttgacggc tattacagcc
     9781 atgatggttc gctggcgcag gttgacctca gtgcgaacta ccatgaaggg caatacacct
     9841 ctgcgggctt gtcgttacag ggcggcgcaa cgcttactgc ccacggtggc gcacttcacc
     9901 gtacccagaa tatgggcggg acacgcttgt tgattgatgc cgatggcgtt gccgatgttc
     9961 cggtggaagg taacggggct gctgtttata ccaatatgtt tggtaaagcc gtcgtttctg
    10021 acgtcaataa ctattaccgc aatcaggcgt atatcgacct caacagattg cctgaaaacg
    10081 ctgaagcaac ccagtcggtg gtgcaagcca cgctaactga aggtgccatt ggctaccgta
    10141 aatttgctgt cattagcgga caaaaagcga tggcggtgct gcgcctgagc gacggcagcc
    10201 atcctccgtt tggcgcagaa gtaaaaaatg ataacgagca gacagtgggc cttgtcgatg
    10261 atgacggcaa tgtttatctg gctggggtga aacctggcga acacatgagt gtgttctgga
    10321 gtggtgttgc gcattgcgat atcaacctgc cggacccgct gcctgccgat ctgtttaacg
    10381 gcttgttact gccatgccag cataaaggca atgtagcacc tatcacttcg ccggcggtca
    10441 aaccggcgat tcaggaacag acacagcggg tgacgccaac ggaacctccg acttcaattt
    10501 cagtaaacca gtaacgtgat taaggaatga tccatgttta atctgactaa cactgcaaaa
    10561 atcgttgtcc cggcactggc gctgctggcg acagcggtca gtttctccag ccacgcttcg
    10621 gtgacgcccg acaggacacg gctggtgttt aacgaaagcg acaagtccat cagcgtcacg
    10681 ctgcgcaaca acgatcccac actgccttat ctggcgcaga gctggataga ggatgcaaag
    10741 ggcaacaaaa tcagctcgcc gcttgcggtg cttccgccag tgcagcgcat cgatgcgatg
    10801 atgaacggcc aggtgaaggt gcaggggctg ccggatatca acaaactgcc ggccgaccgc
    10861 gagagcgtgt tctatttcaa cgtgcgcgaa attccgctga aatcaaataa accgaacaca
    10921 ctgcagattg cgctgcagac gcgtatcaaa ctgttctggc gaccgaaggc gctggagaac
    10981 accagcatga aaagtccgtg gcagcataag gtgacgctca tccgtaacgg ccaggacttc
    11041 accgtcaata acccgacgcc gtactacgtg atcatcagca acgccagcgc taaaaaaggc
    11101 ggcaacccgc cggcgggatt cacaccgctg atgatggagc cgaaaacctc cgcaccgctg
    11161 aatgcgaaga tggacagcgt gccggtgctg acttacatca acgactacgg cgcgcggatg
    11221 ccgctgtact tcaaatgcac cggcaacagc tgccaggtgg atgaagagca gagccgcaaa
    11281 ggctgatgcc gggagggact tatgagtcac aagtttgtag cgggcgcagg gttgctggtg
    11341 ctggccggat ggggcatcag cggtttggct gttgctggca gtgatatcaa acaggtggat
    11401 ctgacgctgc gaatcctggt cgatggaccg ccgccttgct ccgtgaaggg aagcgctgtg
    11461 aaatttggca atgtgataat caacaggatc gatggtacca attaccaaca ggatgcgaaa
    11521 tacaccctca actgcggtaa taaagtcagc gatgacttac ggatgcagct caaaggcaat
    11581 accgccgtga tcaacggaga aacggttctc agcacggata tcgccggcct gggggtgcgg
    11641 atagaaaacg ccgccgacaa ctccctgttt gcagttggtg aaaataactg gacgcctttt
    11701 aatgtcaaca ctcagcctca gctgaaagcg gtgccggtaa aacagagcgg ggtgcaactg
    11761 acgccgtcgg agtttaacgc cacgatgacc atggtggtgg attaccaatg aaaaaattcc
    11821 tgctcctttt actgtgcgct ggttgcgggg ctgtgctggc ggcggaagat gacatcacat
    11881 tccacggtac gctgatgtcg ccgcccgcct gtagcatcag cggcgggcaa accatcgaag
    11941 tgcaatttcg cgatctcatt atcgacagca ttgatggcaa ttatggtcgt cagaaagtgg
    12001 actacgaact gagctgcgac tcggatgtcc gcgatcccga gtggaatatg acactctcct
    12061 ggacggggac tgccacctcc tacaacgact ctgctattga gacggatgta ccgggattcg
    12121 gaattgagct tcagcatgac ggtcagcgtt ttaagctcaa cgagccgctt tccattaacg
    12181 ccaccgattt tagccagaag ccaaagctgg aggcggtacc ggtcaaagcg gctgatgcgg
    12241 tgctgacgga cacgaccttt tctgcttacg caaccttacg ggtggattac caatgaaaac
    12301 agcacacatt tattcacccg gttatgcgct gttagcaggc ctgctgctga ccgccagcac
    12361 aggagcacag gcagtcgaca acaacctgca tttttacggc aacctgctga gtaaatcctg
    12421 cacgctggtg gtggatggtg ccaacctggc agaaatccat tttcccaccg tcagcaaccg
    12481 ggatttgatg gtatctgggc agtccgcgca tctgccggtt gtgtttaagc tgaaagactg
    12541 caa
//
LOCUS       DADMHM010000120        11948 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.121, whole genome shotgun sequence.
ACCESSION   DADMHM010000120 DADMHM010000000
VERSION     DADMHM010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11948)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11948)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11948
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.121"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            16..192
                     /locus_tag="JN125_002793"
     CDS             16..192
                     /locus_tag="JN125_002793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001322497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HAY8872524.1"
                     /translation="MSALFFFNAVCIVSDNLLIIESFGEMAYNISYLTRVPGTNTLLA
                     CCCLLRPEEVNSEY"
     gene            182..355
                     /locus_tag="JN125_002794"
     CDS             182..355
                     /locus_tag="JN125_002794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="addiction module toxin, GnsA/GnsB family"
                     /protein_id="HAY8872525.1"
                     /translation="MNIEELKKQAETEIADFIAQKIAELNKNTGKEVSEIRFTAREKM
                     TGLESYDVKIKIM"
     gene            complement(404..1477)
                     /locus_tag="JN125_002795"
     CDS             complement(404..1477)
                     /locus_tag="JN125_002795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HAY8872526.1"
                     /translation="MAEKKRTRWQRRPGTTGGKLPWNDWRNATTWRKATQLLLLAMNI
                     YIAITFWYWVRYYETASSTTFVARPGGIEGWLPIAGLMNLKYSLTTGQLPSVHAAAML
                     LLVAFIVISLLLKKAFCSWLCPVGTLSELIGDLGNKLFGRQCVLPRWLDIPLRGVKYL
                     LLSFFLYIALLMPAQAIHYFMLSPYSVVMDVKMLDFFRHMGTATLISVTVLLIASLFI
                     RHAWCRYLCPYGALMGVVSLLSPFKIRRNAESCIGCGKCAKNCPSRIPVDKLIQVRTV
                     ECTGCMTCVESCPVASTLTFSLQKPAANKKAFALSGWLMTLLVLGIMFAVIGYAMYAG
                     VWQSPVPEELYRRLIPQAPMIGH"
     gene            complement(1549..4293)
                     /gene="torS"
                     /locus_tag="JN125_002796"
     CDS             complement(1549..4293)
                     /gene="torS"
                     /locus_tag="JN125_002796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415513.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TMAO reductase system sensor histidine
                     kinase/response regulator TorS"
                     /protein_id="HAY8872527.1"
                     /translation="MNLTLTQRLWMGFALMALLTLTSTLVGWYNLRFISQVEKDNTQA
                     LIPTMNMARQLSEASAWELFAAQNLTSADNEKMWQAQGRMLTAQSLKINALLQALREQ
                     GFDTTAIEQQEQEISRSLRQQGELVGRRLQLRQQQQQLSQQIVAAADEIARLAQGQAN
                     NATTSAGATQAGIYDLIEQDQRQAAESALDRLIDIDLEYVNQMNELRLSALRVQQMVM
                     NLGLEQIQKNAPTLEKQLNNAVKILQRRQIRIEDPGVRAQVATTLTTVSQYSDLLALY
                     QQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVDTIELRNQHGLAHLEKASARGQYSLL
                     LLGMVSLCALILILWRVVYRSVTRPLAEQTQALQRLLDGDIDSPFPETAGVRELDTIG
                     RLMDAFRSTVHALNRHREQLAAQVKARTAELQELVIEHRQARAEAEKASQAKSAFLAA
                     MSHEIRTPLYGILGTAQLLADNPALNAQRDDLRAITDSGESLLTILNDILDYSAIEAG
                     GKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLATAIADDVPTALMGDPRRIRQVI
                     TNLLSNALRFTDEGQIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQVSGKRG
                     GTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLPLRVATAPVPKTVNQAVRLDGL
                     RLLLIEDNPLTQRITVEMLNTSGAQIVAVGNAAQALETLQNSEPFAAALVDFDLPDVD
                     GITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYL
                     QLQVNNDQSLDVSQLNEDAQLMGTEKIHEWLVLFTQHALPLLDEIDIARASQDSEKIK
                     RAAHQLKSSCSSLGMRIASQLCAQLEQQPLSAPLPHEEITRSVAALEAWLHKKDLNAI
                     "
     gene            4376..5326
                     /gene="torT"
                     /locus_tag="JN125_002797"
                     /pseudo
     CDS             4376..5326
                     /gene="torT"
                     /locus_tag="JN125_002797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706917.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TMAO reductase system periplasmic protein TorT"
     gene            complement(5299..5991)
                     /gene="torR"
                     /locus_tag="JN125_002798"
     CDS             complement(5299..5991)
                     /gene="torR"
                     /locus_tag="JN125_002798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator TorR"
                     /protein_id="HAY8872528.1"
                     /translation="MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN
                     QPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTK
                     PLELRELVVRVKNLLWRIDLARQAQPHTQDNCYRFAGYCLNVSRHTLERDGEPIKLTR
                     AEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQ
                     HGEGYFLAADVC"
     gene            6121..7279
                     /gene="torC"
                     /locus_tag="JN125_002799"
                     /pseudo
     CDS             6121..7279
                     /gene="torC"
                     /locus_tag="JN125_002799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309178.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pentaheme c-type cytochrome TorC"
     gene            7279..9859
                     /gene="torA"
                     /locus_tag="JN125_002800"
                     /pseudo
     CDS             7279..9859
                     /gene="torA"
                     /locus_tag="JN125_002800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415517.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="trimethylamine-N-oxide reductase TorA"
     gene            9856..10455
                     /gene="torD"
                     /locus_tag="JN125_002801"
     CDS             9856..10455
                     /gene="torD"
                     /locus_tag="JN125_002801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD"
                     /protein_id="HAY8872529.1"
                     /translation="MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLL
                     KSEPPLAAAVNELENCIATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQ
                     EIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKTLTA
                     LWQWLPEFAARCHQYDSFGFYAALSQLLLVLVECDHQNK"
     gene            complement(10548..10853)
                     /gene="cbpM"
                     /locus_tag="JN125_002802"
     CDS             complement(10548..10853)
                     /gene="cbpM"
                     /locus_tag="JN125_002802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone modulator CbpM"
                     /protein_id="HAY8872530.1"
                     /translation="MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWV
                     FDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP"
     gene            complement(10853..11773)
                     /gene="cbpA"
                     /locus_tag="JN125_002803"
     CDS             complement(10853..11773)
                     /gene="cbpA"
                     /locus_tag="JN125_002803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="curved DNA-binding protein"
                     /protein_id="HAY8872531.1"
                     /translation="MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEA
                     RFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIF
                     GQHARQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTL
                     NVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVS
                     PWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMP
                     PKPDENTAALWQQLADAQSSFDPRKDWGKA"
BASE COUNT         2857 a         3077 c         3167 g         2847 t
ORIGIN      
        1 cgtggagcct tttttatatc tgccttattt ttcttcaacg ctgtatgtat agtaagcgat
       61 aacctgttga ttattgaatc tttcggggag atggcttata acatttctta cctgactagg
      121 gtaccgggaa ccaacacctt actggcgtgt tgctgtcttt taagaccaga agaggttaac
      181 agtgaatatt gaagagttaa aaaaacaagc cgaaacggaa atcgccgact ttatcgcgca
      241 aaaaatcgcc gagctgaaca agaatacagg gaaagaagtc tctgaaattc gcttcaccgc
      301 acgagaaaaa atgaccgggc ttgaaagtta tgatgtcaaa atcaaaataa tgtgattttg
      361 tgaacatcac cccgtgcgag gtgatgttcc gcttgttgct aatttagtga ccaatcattg
      421 gcgcttgtgg aattaagcgt cggtacaatt cctccggcac cgggctttgc catactcccg
      481 catacattgc gtaaccaatc accgcgaaca taatccccag aaccagtagc gtcattaacc
      541 agccagacaa cgcaaaagct tttttatttg ccgcaggttt ttgcagtgaa aaggtcaatg
      601 ttgaggctac cggacatgac tctacgcaag tcatacagcc ggtacattcc actgttcgta
      661 cctgaattaa tttatctacc gggatccgtg atgggcaatt ttttgcgcat ttgccacagc
      721 cgatacaact ttcggcattg cgacgaatct taaacggcga taatagcgaa accacgccca
      781 tcagcgcgcc atatgggcaa agataacgac accaggcatg gcgaataaac aggctggcaa
      841 tcagcaaaac ggtcacgctg attaatgtcg cggtccccat atgacgaaag aaatcgagca
      901 tttttacgtc catcaccacg ctgtagggcg acaacataaa atagtgaatc gcctgagcgg
      961 gcatcaataa cgcgatatag agaaaaaaac tcaacagcaa atacttcacg ccgcgcagag
     1021 gaatatccag ccagcgggga aggacacatt gccgaccaaa cagtttgtta ccgagatcgc
     1081 cgattaattc agaaagcgta ccaaccgggc ataaccatga gcaaaaggcc tttttgagta
     1141 atagactgat gacgataaaa gcgaccaata acagcatcgc ggcggcgtgg acggacggta
     1201 actgacctgt tgtaaggcta tatttcagat tcatcagacc ggcaatcggt agccagcctt
     1261 cgatacctcc cggtctggcg acaaatgtcg tgctacttgc cgtttcgtaa tagcgcaccc
     1321 aataccagaa cgtgatggca atataaatat tcattgccaa cagtaataat tgcgtcgctt
     1381 tacgccaggt cgtggcattg cgccagtcat tccacggtaa tttgccgccc gtcgtgcctg
     1441 gccgccgctg ccagcgggtt ctttttttct ctgccatgat tttgccagtc cgttaagttg
     1501 cataccaaat gccactattc tagttgttct taactggctg atattgattc aaatcgcgtt
     1561 caggtctttc ttatgcaacc atgcttccag agcggcaaca ctgcgtgtaa tttcttcgtg
     1621 tggaaggggg gcagataatg gctgctgctc cagttgtgcg catagctggc tggcgatacg
     1681 cattcccaaa ctcgagcaac tgctttttag ctgatgcgcg gcacgcttta ttttctcgct
     1741 atcctgactg gcgcgggcaa tgtcgatttc atcgagaagc ggcagggcat gttgtgtaaa
     1801 taataccagc cattcgtgga tcttctccgt ccccattaac tgagcatctt cattgagttg
     1861 cgatacatcc agcgattgat cgttattgac ttgcagttgg agatagtgcg ccagtaactg
     1921 accgagcact tcacgcggca ccggtttagg gataatcccg cggaataatg aactggtacg
     1981 ctggcgcagc gtttcgtcaa tgacatgggc gctaaagcca atcaaaacca gcgacggata
     2041 ttgctgtgcc agttgtcggg caagcgtaat gccgtcgaca tccggcagat caaaatccac
     2101 cagtgcggca gcaaacggtt cgctattttg cagtgtctct aaagcctgcg cggcattgcc
     2161 aacagcaaca atctgcgcac cactggtgtt cagcatctca acggtaattc gctgggttag
     2221 cgggttatct tcaattaaca gcaaacgtaa accgtcaaga cgcaccgcct gattgactgt
     2281 ttttggcacg ggtgccgtgg caacacgtaa cggcaagcgt aaacaaaaac agcttccaac
     2341 ctccggcgtg ctggtggcgc tcagttcgcc gcccatcgcc tgggccagac ggctactgat
     2401 agtcagtccc agcccggtgc cgccgcgttt gccgcttacc tgcacaaatg gctggaagat
     2461 ttctgccagt ttcgcgggat caataccgca gccgctgtct tccacttcga ccagccattg
     2521 ctcgccatca gtgcggctac gtaaaacgat ctgcccttcg tcagtaaaac gcagggcgtt
     2581 gctcaacagg ttggttataa cctgacgaat acgtcgcgga tcgcccatta acgcggtcgg
     2641 tacatcgtcg gcaattgctg ttgccaggcg aatcgggcga cctttcaccc gtccgctcat
     2701 taattgcagg gtactttcca gcagcgggcg cggttcaaag ggctcatcgc tgaccgaaac
     2761 attcttgcca cctgcttcga tagccgaata atcgagaata tcgttgagga tggtcagcaa
     2821 cgattcgcca gagtcggtaa tcgcccgcaa atcatcacgc tgggcgttaa gtgcggggtt
     2881 atctgccagc agttgagcag tgccgagaat accgtacagc ggtgtgcgga tctcatggct
     2941 catcgccgcc agaaaggccg attttgcctg gctggctttt tctgcttccg cccgtgcctg
     3001 tcggtgttct atcaccagtt cctgcaattc agctgtacgc gctttgacct gcgccgccag
     3061 ctgttcacgg tggcgattca gtgcatgaac agtgctgcga aacgcatcca tcagccgccc
     3121 gatggtatcc agctcccgta cgccagcggt ttccgggaaa ggggagtcaa tatcaccgtc
     3181 cagcagccgt tgcagcgcct gcgtttgttc ggcaagtgga cgcgtgactg agcgataaac
     3241 cacgcgccaa aggatcagaa tcagtgcgca aagtgaaacc atccccagca ataacaggct
     3301 gtattgcccg cgtgcactgg ctttttccag atgcgccagt ccgtgctgat tacgcagctc
     3361 aatggtgtcg accagctgac tgacttcgct actaaactgc gcgaactggg cgatgttatt
     3421 ttgtgcgaga gtttgtaggt gattgctgat ttcactgtcc tgctgataca gcgccagcaa
     3481 atcgctatat tggctaacgg tagttaacgt tgttgcgacc tgcgcacgaa cacccggatc
     3541 ttcaatgcgt atttgccgac gttgcagaat tttcaccgca ttattgagct gcttttccag
     3601 cgttggtgca tttttctgga tctgctccag ccccagattc atcaccattt gctgcacccg
     3661 cagagcgcta aggcgcagtt cattcatctg gttaacatac tcaagatcga tatcaatcag
     3721 ccgatcgagt gcactttcag cagcctgacg ctgatcttgt tcgatcaaat cgtaaatccc
     3781 ggcctgggtc gctccagcgg aagttgtcgc attattcgcc tgaccttgcg ccaggcgtgc
     3841 gatctcatcg gcggcagcga ctatctgctg actgagttgc tgttgttgct ggcgtagttg
     3901 cagacgccgc cccaccagtt ccccttgctg acgtaacgaa cgggagatct cctgctcctg
     3961 ttgttcaata gcggtggtat caaaaccttg ttcccgtaac gcttgcagca acgcattaat
     4021 cttcaggctt tgtgcggtga gcattcgccc ctgcgcctgc cacatctttt cgttatcggc
     4081 actggtcagg ttctgcgcgg cgaaaagttc ccaggcgctg gcttcgctca actggcgcgc
     4141 catattcatg gtaggaatca atgcctgagt gttgtctttt tccacctggc tgataaagcg
     4201 caggttgtac catcccacca gggtactggt tagggttaac agcgccatca gggcaaagcc
     4261 catccagagt ctttgggtca gggttaaatt cacggtcggt gcactttagg tgaaaaaggt
     4321 tgagtcgcaa agcagaatgc atctagcata aagccttatt attgatgagg ctatcatgcg
     4381 cgtactgcta tttttacttc tttccctttt catgttatcg gcattttcgg gtgataacct
     4441 gttgcgctgg catgatgcgc agcattacac ggtgcaagcc tctacgccgc ttaaagccaa
     4501 acgcgcatgg aaactgtgcg cgctttatcc cagcctgaaa gattcatact ggttatcgtt
     4561 gaactatggt atgcaggagg caggcggcta cagccagttg gctactcagc aagcacaaat
     4621 cgaccagtgt aaacagtggg gcgcagaggc cattttgctc ggtagtagca ctacgtcatt
     4681 tcccgacctg caaaagcagg tagcaaatct gccggtgatc gaactggtaa atgctcttga
     4741 tgatcccctg gtgaaaagcc gcgttggtgt accctggttt cagatgggct atcaacctgg
     4801 gcgatatttg gtgtaatggg cgcacggtaa accactgaac gtgctgttga tgcccggacc
     4861 cgataatgcc gggggcagta aagagatggt cgagggtttt cgcgcagcca ttgccggaag
     4921 cccggtgcgt attgttgata ttgcgcttgg tgataacgat attgaaatcc agcgtaacct
     4981 gttgcaggag atgctggaac gccacccaga aatcgacgtc gttgccggaa cggccattgc
     5041 ggcagaggcg gcaatgggtg aagggcgtaa cctgaaaacg ccgcttaccg tggtgtcgtt
     5101 ttatctttca catcaggtgt atcgcgggct gaagcgggga agagtgatta tggctgccag
     5161 cgatcaaatg gtctggcagg ggcaatcggt gtctgataat gtcagcccac cgattttagt
     5221 tctgacgccg aaaaatgccg accgtgaaca tattcgccgc tcgctgtcac cagggggatt
     5281 tcgtccggtc tatttttatc agcacacatc agcggctaag aaataacctt caccatgttg
     5341 cgtcaccagt aaatccgcgc tgagtttatg acgtaaacga cgaattaaca catcgacggt
     5401 gcgcaggtca gggttttcca cccgacgcgc agaaagcata cgtagcagac gttcacggct
     5461 gagaatttcg cccggattcg tcacaaatgc caccaacatt tcatactctg cgcgggtcag
     5521 tttaatcggc tcgccatccc gctccagcgt atggcgcgac acattcaggc aataaccggc
     5581 aaagcgatag cagttgtcct gagtgtgcgg ttgagcttgt cgcgcgaggt cgattcgcca
     5641 gagcagattt ttcacccgta ctaccagttc gcgcagttcc agcggtttgg tgacgtaatc
     5701 gtctgcgccc atttccagcc caacaatacg gtcaatccga tcgctgcgtc cggtaaccag
     5761 aataatcccc accgttgagc gttctcgcag ggcgcgggtt aacatcaggc cattttcatc
     5821 gggtaagttg atatccagca gaattaaatc taccggctga ttctgcataa tttcccgcag
     5881 cccggcaccg ctcgctgtaa cggaaacggt atacccctcc tgagtgaagt aagattgtaa
     5941 tcgcgcctgg gtaaccggct catcttcaac aataacaatg tgatgtggca tcagagggtt
     6001 ttactcattc tgttcatatc tgttcatatt ctgccgtaag ccgttcatcc tgaccagtgc
     6061 cgctgttcat atttgctcat taagatcgct tcactaaacc ataattttac agcggctatt
     6121 atgcggaaac tctggaacgc gctacgccga cccagtgctc gttggtcggt actggcgctg
     6181 gtcgcaattg ggattgtgat tggcattgcg ctgattgtat tgccacacgt tgggatcaaa
     6241 gtcaccagca caaccgaatt ttgtgtcagt tgccacagta tgcaaccggt gtatgaagaa
     6301 tataaacagt cggtgcattt ccagaacgcc tccggcgtgc gagctgaatg ccatgccgga
     6361 tattccaggc atggtgaagc gcaaactgga agcgagcaat gatatctacc agacctttat
     6421 tgctcactcc attgatacac ctgaaaaatt cgaagccaaa cgcgcggaac ttgccgagcg
     6481 tgaatgggcg cgaatgaaag aaaacaactc ggcaacctgc cgctcctgcc ataactacga
     6541 tgcgatggat catgcgaagc agcatcctga agcggcacgt cagatgaagg tggcagcgaa
     6601 agataatcaa tcctgcatcg actgtcataa aggtattgcc caccagttac cggatatgag
     6661 tagcggcttc cgtaagcagt tcgatgagct gcgcgccagt gctaatgaca gtggtgacac
     6721 gctgtactct attgatatta agccaattta tgcggcgaaa ggcgataaag aagcctctgg
     6781 ttctctgctg cctgcttcgg aagtgaaagt ccttaaacgt gacggcgact ggctgcaaat
     6841 tgaaattacc ggctggacgg aaagcgccgg acgtcagcgt gtactcaccc aattcccagg
     6901 taaacgcatc tttgttgcct cgattcgtgg tgatgtgcag cagcaggtaa aaacgctgga
     6961 gaaaaccacc gttgccgaca ccaataccga gtggagcaag ttgcaggcca ctgcgtggat
     7021 gaagaaaggt gatatggtga acgatatcaa accgatctgg gcttatgcgg attcgttgta
     7081 caacggcacc tgtaaccagt gccacggcgc accggaaatc tctcactttg atgctaacgg
     7141 ctggattggc acgctcaacg gcatgattgg ctttaccagt ctcgataaac gtgaagaacg
     7201 caccttgttg aaatatctgc aaatgaatgc gtctgacatc gcaggtaagg ctcacggcga
     7261 taagaaggaa gaaaaataat gaacaataac gatctctttc aggcatcacg tcggcgtttt
     7321 ctggcacaac tcggcggctt aacagtcgcc gggatgctgg ggccgtcatt gttaacgccg
     7381 cgcagtgcga ctgcggcgca agcggcggct gtcatctcga aagagggcat tcttaccggg
     7441 tcgcactggg gggctatccg cgcgacggtg aaggatggtc gctttgtggc ggcaaaaccg
     7501 ttcgaactgg ataaatatcc gtcgaaaatg attgccggat tgccggattg ccggattgcc
     7561 ggattgccgg attgccggat tgccggatca cgtacacaac gcggcgcgta ttcgttatcc
     7621 gatggtacgc gtggactggc tgcgtaagcg ccatctcagc gatacctccc agcgcggtga
     7681 taaccgtttt gtgcgcgtga gctgggatga agccctcgac atgttctatg aagaactgga
     7741 acgcgtgcag aaaactcacg ggccgagtgc cttgctgacc gccagtggtt ggcaatcgac
     7801 ggggatgttc cataacgctt cggggatgct ggcgaaagct attgccttgc atggtaatag
     7861 cgttggtacg ggcggagatt actctaccgg tgctgcgcag gtgatcctgc cgcgcgtagt
     7921 cggttcgatg gaagtgtatg aacagcaaac ctcctggccg ctggtattgc agaacagcaa
     7981 aaccattatg ctgtggggct ccgatttgct gaaaaaccag caagcgaact ggtggtgccc
     8041 ggatcacgat gtttatgaat attacgagca actaaaagcg aaagtcgccg ccggtgaaat
     8101 tgaggtcatc agcatcgatc cggttgtcac atccacccat gagtatctgg ggcgcgagca
     8161 tgtgaagcac attgcggtta acccgcaaac tgacgtgccg ctgcaactgg cgctggcgta
     8221 tacgctgtac agtgaaaacc tgtacgacaa aaacttcctc gctaactact gtgtaggttt
     8281 tgagcagttc ctgccgtatc tgctgggtga gaaagacggt cagccgaaag atgccgcatg
     8341 ggctgaaaaa ctgaccggca ttgatgccga aaccattcgt gggctggcgc ggcagatggc
     8401 ggcgaacaga acgcaaatta ttgctggctg gtgcgtgcag cgtatgcagc acggtgaaca
     8461 gtgggcgtgg atgattgtgg ttctggcggc gatgctgggg caaattggcc tgccaggtgg
     8521 tggttttggt tttggctggc actacaacgg cgcaggcacg ccggggcgta aaggcgttat
     8581 tctgagtggt ttctccggct ctacgtcgat tccgcctgtt cacgacaaca gtgactacaa
     8641 aggctacagc agcaccattc cgattgcccg ttttatcgat gcgatcctcg aaccggggaa
     8701 agtgatcaac tggaacggta aatcggtaaa actgccgcca ctgaaaatgt gtatttttgc
     8761 cggaactaac ccattccatc gccatcagca gatcaaccgc attattgaag gctggcgcaa
     8821 gctggaaacg gttatcgcca tagataacca gtggacctca acctgccgct ttgccgatat
     8881 tgtactgcct gcgaccacgc agtttgagcg taacgatctc gaccagtacg gcaaccactc
     8941 caaccgtggc attatcgcca tgaaacaggt ggtgccgccg cagttcgagg cgcgcaacga
     9001 ctttgatatt ttccgcgagc tgtgccgtcg ctttaatcgc gaagaagcct ttaccgaagg
     9061 gctggacgaa atgggctggc tgaaacgcat ctggcaggaa ggtgtacaac aaggcaaagg
     9121 acgcggcgtt catctgccag cgtttgatga cttctggaat aacaaagagt acgtcgagtt
     9181 tgaccatccg cagatgtttg ttcgccacca ggcattccgc gaagatccgg atctcgaacc
     9241 gctgggcacg ccgagtggcc tgattgagat ctactcgaaa accatcgccg atatgaacta
     9301 cgacgattgt caggggcatc cgatgtggtt tgagaaaatc gaacgctccc acggtgggcc
     9361 cggctcgcag aagtatccgt tgcatctgca atctgtgcat ccggatttcc gacttcactc
     9421 gcagttatgt gagtcggaaa ctctgcgtca gcaatatacg gtagcgggta aagagccagt
     9481 attcattaac ccgcaggatg ccagcgcgcg cggtattcgt aacggtgatg tggtacgcgt
     9541 ctttaacgct cgcggtcagg tgttggcagg ggcagtagtt tctgaccgct atgcacccgg
     9601 cgtggcacga attcacgaag gggcatggta cgatccagat aaaggcggcg agcctggtgc
     9661 gctgtgcaaa tacggtaacc ccaacgtgct gaccatcgac atcggtactt cgcagctggc
     9721 gcaggcgacc agtgcgcaca ctacgctggt ggaaattgag aagtacaatg gagcagtgga
     9781 gcaggtgacg gcgtttaacg gccctgtgga gatggtggcg cagtgcgaat atgttcccgc
     9841 gtcgcaggtg aaatcatgac cacgctgaca gcacaacaga ttgcctgtgt ttacgcctgg
     9901 ctggcgcagt tgttctcccg tgaactggac gatgaacaac tgacgcaaat cgccagtgcg
     9961 cagatggctg aatggttttc gttgctgaaa agcgaaccgc cgctggctgc ggcggtgaat
    10021 gagctggaaa actgtattgc cacgctgaca gtacgtgacg atgcccgtct ggaactggcc
    10081 gctgactttt gcggcctgtt tttgatgact gataagcagg cggcgctgcc gtatgcatcg
    10141 gcctacaaac aggacgagca agagattaaa cgcttgttag ttgaggcagg gatggaaacc
    10201 agcggcaatt tcaacgaacc ggcagaccat ctggcgatct atctcgagtt gttgagtcat
    10261 ctgcattttt cgctgggaga ggggaccgtt cctgcgcgaa gaatcgacag tttgcggcaa
    10321 aaaacactga cggcgctgtg gcaatggtta ccagagtttg ctgcgcgttg ccatcagtat
    10381 gacagctttg gtttttacgc ggcactaagc cagttattgc tggtgttagt ggagtgcgac
    10441 caccaaaaca aataacgtcg tttatgcgcc tgaaaagacg cgtttagcgt cgcatcaggc
    10501 attatggcgc agttgccgga tgcgtcatca catccggcaa acacacatca cggatgagct
    10561 acaaaccggg aaagccgctg gcgtagcagg cggttttcct gcttcaggtg tgcaatatca
    10621 tccattaacg tcagcgccac cgcgatcccc ggccagtcca gagccagttc atgacgcagg
    10681 cgtaccgcgc gttgcaccac aatggcggca tggtcgtcaa atacccaggt tgtttcctgg
    10741 atctcacgcg gttcaaccac ccccaaaccg acaatttcat tcaactcctc ttcagagatg
    10801 ccggtatgca ggcaaaattc ggtaatagta aaagtcaccg taacattagc catcatgctt
    10861 tcccccaatc tttacgtgga tcaaaagacg actgggcgtc tgccagttgc tgccacagcg
    10921 cggcagtgtt ttcatccggt ttcggcggca tcacgatttt cagtaccgca tacagatcgc
    10981 cggtctgttt tttgctcacc agacctttgc ctttaacgcg caatcgttgc ccggcctggc
    11041 tgcctggcgg gatagtcagc aaaatgcttt ctttcagtgt tggaacggtg actttagcac
    11101 ccagcgccgc ttcccacggg ctaaccggca ccacaatttc cagatcctgg ccgacaatat
    11161 cgaacagcgg atgtggcgca atatgaatca ccagccacaa atcgccattt ggaccaccgt
    11221 tttcgcccgg cgtcccctgg cctttcagac ggatgcgttg accattgccg acgcccgccg
    11281 ggatcttcac attcagcgtt ttcgggattt cctgttcgat catgccaaag gcgttataaa
    11341 ccggcaggtt atagctgatg gtacgcttat gctcagtcag cgtttcttcg aggaataccg
    11401 ccacttcgat ttcaatatcg tggccgcgtg cggcggggcg ttgacggctc tggcgggcat
    11461 gctgaccgaa aattgacgag aagatatcgt caaaatcttc ggcattaaaa ctctgaccgt
    11521 cgccatgatg gaactgacgg ttaaattgcg gatcgttgcg atgttgccac atctgatcat
    11581 actcagcgcg acgttgttca tcacttaaca cttcccaggc ttcagcgacc tctttgaagc
    11641 gggcttcggc atccggttct ttgctgacat caggatggta tttacgggcc agtcgacgat
    11701 aggcggtctt gattgtcttg agatcgtccg tcggtttcac gcccatgatg gcgtaataat
    11761 cctttaattc catagcgtta tctcgcgtaa atcaacacaa attgaaggaa cccctgtaag
    11821 gtaactccta taagtgtagg gtaatcctca aaatttcata tgccaacaca gaatatgtta
    11881 ttgaaatcat cgtggagagg cggtcgccat caatatgggt tgctgaacat attttaaaca
    11941 ggtgaaaa
//
LOCUS       DADMHM010000121        11875 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.122, whole genome shotgun sequence.
ACCESSION   DADMHM010000121 DADMHM010000000
VERSION     DADMHM010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11875)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11875)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11875
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.122"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(32..346)
                     /locus_tag="JN125_002804"
                     /pseudo
     CDS             complement(32..346)
                     /locus_tag="JN125_002804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418152.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIB family hydrolase"
     gene            complement(461..868)
                     /locus_tag="JN125_002805"
     CDS             complement(461..868)
                     /locus_tag="JN125_002805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001311237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YidB family protein"
                     /protein_id="HAY8872532.1"
                     /translation="MIIMGLFDEVVGAFLKGDAGKYQAILSWVEEQGGIQVLLEKLQS
                     GGLGAILSTWLSNQQSNQSVSGEQLESALGTNAVSDLGQKLGVDTSTASSLLAEQLPK
                     IIDALSPQGEVSSQANNDLLSAGMELLKGKLFR"
     gene            complement(1099..3513)
                     /gene="gyrB"
                     /locus_tag="JN125_002806"
     CDS             complement(1099..3513)
                     /gene="gyrB"
                     /locus_tag="JN125_002806"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HAY8872533.1"
                     /translation="MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVV
                     DNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG
                     KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET
                     EKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHY
                     EGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQR
                     DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS
                     QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMT
                     RRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI
                     LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT
                     LLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATL
                     HTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQ
                     TVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI
                     TGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYK
                     GLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADLLFTTLMGDAVEPRRAFIEENALK
                     AANIDI"
     gene            complement(3542..4615)
                     /gene="recF"
                     /locus_tag="JN125_002807"
     CDS             complement(3542..4615)
                     /gene="recF"
                     /locus_tag="JN125_002807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HAY8872534.1"
                     /translation="MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIY
                     TLGHGRAFRSLQIGRVIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDG
                     HKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWACFHNEPGFFTAWSNLKRLLKQ
                     RNAALRQVTRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMADTCKQFLPEFSLTF
                     SFQRGWEKETEYAEVLERNFERDRLLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKL
                     LMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISA
                     EHVIDMSDENSKMFTVEKGKITD"
     gene            complement(4615..5715)
                     /gene="dnaN"
                     /locus_tag="JN125_002808"
     CDS             complement(4615..5715)
                     /gene="dnaN"
                     /locus_tag="JN125_002808"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006177590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HAY8872535.1"
                     /translation="MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSL
                     TGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSG
                     RSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLF
                     ETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQI
                     GSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE
                     KFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCE
                     NVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL"
     gene            complement(5720..7123)
                     /gene="dnaA"
                     /locus_tag="JN125_002809"
     CDS             complement(5720..7123)
                     /gene="dnaA"
                     /locus_tag="JN125_002809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HAY8872536.1"
                     /translation="MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPN
                     RFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEVGTKPVTQTPQAAVTSNVAAPAQVA
                     QTQPQRAAPSTRSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADN
                     PGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNA
                     IEEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEIN
                     GVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDILLPGEVAFFIAKRLRSNVR
                     ELEGALNRVIANANFTGRAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKVA
                     DLLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREE
                     SHDIKEDFSNLIRTLSS"
     gene            7420..7500
                     /locus_tag="JN125_002810"
     CDS             7420..7500
                     /locus_tag="JN125_002810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872537.1"
                     /translation="MTIDKNWLNRSNKDLGRSLRFTHQPV"
     gene            7730..7870
                     /gene="rpmH"
                     /locus_tag="JN125_002811"
     CDS             7730..7870
                     /gene="rpmH"
                     /locus_tag="JN125_002811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001686914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HAY8872538.1"
                     /translation="MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTV
                     SK"
     gene            7887..8246
                     /gene="rnpA"
                     /locus_tag="JN125_002812"
     CDS             7887..8246
                     /gene="rnpA"
                     /locus_tag="JN125_002812"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014172301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HAY8872539.1"
                     /translation="MVKLAFPRELRLLTPSQFTFVFQQPQRAGTPQITILGRLNSLGH
                     PRIGLTVAKKNVRRAHERNRIKRLTRESFRLRQHELPAMDFVVVAKKGVADLDNRALS
                     EALEKLWRRHCRLARGS"
     gene            8210..8467
                     /gene="yidD"
                     /locus_tag="JN125_002813"
     CDS             8210..8467
                     /gene="yidD"
                     /locus_tag="JN125_002813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_462741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HAY8872540.1"
                     /translation="MAPPLSPGSRVLIALIRVYQRLISPLLGPHCRFTPTCSSYGIEA
                     LRRFGVIKGSWLTVKRVLKCHPLHPGGDDPVPPGPFDTREH"
     gene            8470..10116
                     /gene="yidC"
                     /locus_tag="JN125_002814"
     CDS             8470..10116
                     /gene="yidC"
                     /locus_tag="JN125_002814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HAY8872541.1"
                     /translation="MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAA
                     GSAADQGVPASGQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLET
                     SPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNT
                     FTKTFVLKRGDYAVNVNYNVQNAGEKPLEISTFGQLKQSITLPPHLDTGSSNFALHTF
                     RGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYT
                     ANLGNGIAAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLW
                     FISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKTQYTSMAKMRMLQPKIQA
                     MRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAP
                     FALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLW
                     FPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKKS"
     gene            10222..11586
                     /gene="mnmE"
                     /locus_tag="JN125_002815"
     CDS             10222..11586
                     /gene="mnmE"
                     /locus_tag="JN125_002815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HAY8872542.1"
                     /translation="MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPKPR
                     YADYLPFKDADGSVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPG
                     LRIARPGEFSERAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLV
                     EALTHLRIYVEAAIDFPDEEIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMK
                     VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE
                     ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVR
                     NKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGGFLARRRH
                     LQALEQAAEHLQQGKAQLLGAWAGELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSF
                     CIGK"
     gene            11828..>11875
                     /gene="tnaC"
                     /locus_tag="JN125_002816"
     CDS             11828..>11875
                     /gene="tnaC"
                     /locus_tag="JN125_002816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophanase leader peptide"
                     /protein_id="HAY8872543.1"
                     /translation="MNILHICVTSKWFNID"
BASE COUNT         2719 a         3248 c         3062 g         2846 t
ORIGIN      
        1 ggtatcgctt agtttttcaa tttcctatac gtgaaccgac ttcgcgagag agtttttcca
       61 ggaaacgata gtcgtcataa ctgagagcag tttgcgccac ggtgctacca tcagcggcct
      121 tctgtaccag cgcgccgtta taagtaatgc agtagtcgcc cggctgttcc atatgcagct
      181 ctttcaggta gttgtgaacg cctgcataag ggcgacccgt cgttagcacg acattcacgc
      241 cacgggcgcg agctgcggca atcgcatttt taacggcggg tgaaatggtg tgatcgggca
      301 gcagaagggt gccatccata tcgatagcaa tgagtttgat agccatgagt tccccaggta
      361 gattagttcc tgacccatgc taacgcgatt ccgctcaaaa atcagtacaa cacccgaggg
      421 aaaaggggga tgcaacgcgg gttgcatgct ccccatttgc ttagcggaag agtttccctt
      481 tcagcagttc catacctgcg gaaagcagat cgttattggc ttgtgaagac acttcacctt
      541 gcggtgagag cgcatcaata atcttcggca attgttctgc cagtaaactg gaagccgtac
      601 tggtatccac gccaagtttt tgcccgagat cggacaccgc atttgtgccg agcgccgatt
      661 ccagttgctc gccgctaact gattgattgc tctgctgatt actcaaccag gttgagagaa
      721 tggcccctaa gccgccactt tgcagttttt ccagcagcac ctgaatgccg ccctgctcct
      781 caacccaact taaaattgcc tgatatttcc ccgcatcgcc tttcagaaag gcaccgacaa
      841 cttcatcaaa aagccccatg ataatcacct gtaaagcgtt acgtgttgac ccaaaaagta
      901 tagatctgcg ggatgataat tgcggattgc agaaataaaa agggcggaga tgatctccgc
      961 ccttttttta tagcttcttg ccggatgcgg cgttaacgtc ttacctggcc tacaaaatca
     1021 ttaaaattca atacattgca agattttcgt aggcctgata agcgtagcgc atcaggcacg
     1081 ctcgcatggt taacgccatt aaatatcaat attcgccgct ttcagggcgt tctcttcaat
     1141 aaacgcacga cgcggttcta cggcgtcgcc catcagcgtg gtgaacaaca ggtcagcggc
     1201 aatcgcatcc ttaacggtaa cgcgcagcat acgacgactt tccgggtcca tggtggtttc
     1261 ccacagctgt tccgggttca tctcgcccag acctttataa cgctggatgg agagaccgcg
     1321 acgagactct ttcaccagcc agtccagcgc ctgctcgaag ctggctaccg gctgacgacg
     1381 ctcgccacgt tcgataaatg catcttcttc cagcaagcca cgcagtttct cacccagcgt
     1441 gcagatacga cgatattcgc caccagtgat aaattcgtga tccagcggat agtcagtatc
     1501 cacaccgtgg gtacgcacgc gaacaatcgg ctcgaacagg ttttgttcgg cattggtgtg
     1561 gacatcaaac ttccactggc tgccgtgctg ttctttgtcg ttcagttcgc tgaccagcgc
     1621 gttcacccag cgggtaacgg tctgctcatc agagaggtcg gcttccgtca gcgtcggctg
     1681 atagataagc tctttcagca ttgctttcgg ataacgacgc tccatgcggt tgatcatttt
     1741 ctgcgtcgcg ttgtactcag acaccagttt ctctaacgct tcgccagcca atgccggtgc
     1801 gctggcgttg gtgtgcagcg ttgcgccgtc cagcgcgata gagatctggt actgatccat
     1861 cgcttcgtcg tctttaatgt actgttcctg cttgcctttc ttcactttgt acagcggcgg
     1921 ctgagcgatg tagacgtgac cgcgttcaac gatttccggc atctgacgat agaagaaggt
     1981 caacagcagc gtacgaatgt gcgagccgtc gacgtccgca tcggtcatga tgatgatgct
     2041 gtgataacgc agtttgtccg ggttgtactc gtcacgaccg ataccacagc caagcgcggt
     2101 gataagcgtc gccacttcct gagaagagag catcttatcg aagcgcgctt tctcaacgtt
     2161 gaggatttta cccttcagcg gcagaatcgc ctggttcttg cggttacgcc cctgcttcgc
     2221 agagccgccc gcggagtccc cttccaccag gtacagttcg gaaagcgccg gatcgcgttc
     2281 ctggcagtct gccagtttgc ccggcaggcc cgctaagtcg agcgcacctt tacggcgggt
     2341 catttcacgc gcgcgacgcg ccgcttcacg ggcacgggca gcatcgataa ttttgccaac
     2401 cacgattttc gcgtcggttg ggttttccag caggtattct gccagcagtt cgttcatctg
     2461 ctgttcaacc gccgatttca cctcagaaga aaccagtttg tctttggtct gggaggagaa
     2521 tttcgggtcc ggcactttta cggaaacgac cgcaatcagg ccttcacgcg catcgtcacc
     2581 agtggcgctg actttggctt ttttgctgta gccttctttg tccatgtagg cgttcagggt
     2641 acgggtcatc gccgcacgga agcctgccag gtgagtaccg ccgtcacgct gcggaatgtt
     2701 gttggtaaag cagtagatgt tttcctggaa gccatcgttc cactgcaacg ccacttcgac
     2761 gccaataccg tctttttcgg tggagaagta gaagatattc ggatggatcg gcgttttgtt
     2821 cttgttcaga tattcaacga acgccttgat gccgccttca tagtggaagt ggtcttcttt
     2881 gccgtcacgc ttgtcgcgca gacgaatgga aacgccggag ttgaggaacg acaactcacg
     2941 cagacgtttc gccagaattt catattcgaa ctcggtcaca ttggtgaagg tttcgaggct
     3001 gggccagaaa cgcaccatgg tgccggtttt ttcagtctcg ccggtaaccg ccagcggagc
     3061 ctgcggtaca ccgtgttcgt agatctgacg gtgaatttta ccctcgcgct ggataaccag
     3121 ctccagtttt tgcgacaggg cgtttactac cgaaacacca acgccgtgca gaccgccgga
     3181 cactttatag gagttatcgt caaatttacc gcctgcgtgc agaacggtca tgatcacttc
     3241 cgccgccgat acgccctctt ccgggtgaat accggtcgga atgccacgcc cgtcatcctg
     3301 tacagagaca gagttatcgg cgtgaatggt gacgataatt tctttacagt gacccgcgag
     3361 cgcttcgtcg atagcgttat ctaccacctc gaataccatg tggtgcagac cggtgccgtc
     3421 atccgtgtcg ccgatataca tacccgggcg cttacgcacc gcatccagcc ctttcaggac
     3481 tttgatactg gaggagtcat aagaattcga catcaacgtt tctcgctcat ttatacttgg
     3541 gttaatccgt tattttaccc ttttccacgg taaacatctt cgaattttcg tccgacatgt
     3601 ctataacgtg ttcagcactg atcgcgctga caaagacctg tgattgcgtc gcttttaagc
     3661 ggctggcaag cagcccgcga cgctcatcat caagctcaga ggcaaaatca tctatcaggt
     3721 agagacaccg ccgcccgctt tcacgggtga ggaactctcc ttgcgccaga cgtaaggcgc
     3781 acatcaacag cttaagctgc ccacgcgata aggtatcttc caccggcgca ccgtcggcgc
     3841 gaatgcgtaa gtccgcttta tgcgggccat gcgcggtgta ggttagcagg cgatcgcgtt
     3901 caaaattacg ttccagcacc tcagcatatt ctgtctcttt ctcccagccg cgctggaaag
     3961 agaaagtcag agaaaactca gggagaaatt gcttacaagt atcggccata tcagccgcga
     4021 taccggcgct atactccgcg cgccaggtgc tgatttgctc cgccagcggg atcagctctt
     4081 tatcccacgg gcgtagctgt tcgtaacgtg tcacctggcg cagcgccgca ttgcgctgct
     4141 tgagcaatcg cttgagattg ctccaggcgg tgaaaaatcc gggttcgttg tgaaagcatg
     4201 cccagtcgag aaatgctctt ctgtatttgg ggccgccgtt gagtaaagta aacccttctg
     4261 gcgttatcag ctgcatcggc atcaggtgcg ccagctccgc gactttatgc ccgtcagtac
     4321 cgtcgatgcg gactttgctg tcgccttgtt tgtctttggt taagccaatc gccgtctcgc
     4381 gctcttcgcc ctgtaatcgc ccatggagaa caaatgcctc ctgctcatgg cgaatgacgc
     4441 gaccaatctg caaactgcga aacgcccgac catggccgag cgtatagatg gcttccagca
     4501 cgctggtttt gccactgccg ttggcaccta ccagaaagtt aaagccggga gataaggcga
     4561 gatccgcggt ttcgatattg cggaaatcgc ggatcaacaa gcgggtgagg gacattacag
     4621 tctcattggc atgacaacat aagccgcgct ctggctggcc gcatcttcaa tctgcacgct
     4681 ggaaaccgaa tcggtcagca tcatgcggac gttttcgcat ttcagcgcgt tcagaacatc
     4741 cagcacatag ctgacgttga agccgatttc catctccgca ccgctatagg taacgtcgag
     4801 gatctcttcc gcttcttcct gttccgggtt gttggcagtg attttcagct ggttttcgct
     4861 gacataaaga cgtacgccgc ggaatttctc gttagagaga attgccgcac gggcaaacgc
     4921 ctgcttgagc agatcgcagc cagcttccag atgtttgtcc gggttcttcg gtagaacgcg
     4981 gcggtaatcc gggaagcgac catccaccag tttggaggtg aagataaagt cgccaacgtg
     5041 ggcacgaatg ttattgctgc caatctgcac gcgcagcgga ttgtcgccgc cgtcgagcat
     5101 acgcatcagt tcaatcacgc ctttacgcgg cacgatcacc gaatggcttg gcaaagattg
     5161 accaattggc attgaacaga ctgccagacg gtgaccatcg gtcgctacgg tgcgcagttc
     5221 ttcgccttcg gtttcaaaca gcataccgtt taagtaatag cgaacatcct gatgcgccat
     5281 cgaaaactgg gtcgcttcaa tcagacgctt catcgtcgcc tgcggcaggg taaattcgac
     5341 ttcgctctgc cagtcatcga ggttcgggaa atccgccgct ggcagggtag acagcgaaaa
     5401 acggctacgc ccggagcgca ccagcatccg ttcaccttcc agctgcacgg caatttccgc
     5461 gccttcaggc agaccacggc agatatcaaa gaatttgcgc gccggaacgg tcgttgctcc
     5521 tggctcgtgt ggctgaacca gcgcaacacg tgccaccatt tccatctcga gatcagtacc
     5581 ggtcagcgac aacgtaccgt cagcaacctg taacagcaga ttaccgagaa tcggtagcgt
     5641 aggacgacca cctaacggac cgctcacctg ttgtagcggt tttaataaat gctcacgttc
     5701 tacggtaaat ttcataggtt tacgatgaca atgttctgat taaatttgaa aaatcttctt
     5761 tgatatcgtg gctctcttca cgcaactgct cgatcttacg gcaggcatga agcaccgtcg
     5821 tgtggtcacg accaccaaac gcatcgccaa tctccggcag actgtggtta gtcagctctt
     5881 tcgccagcgc catcgccatc tggcgcggac gcgccaccga gcgggatcga cgcttggaaa
     5941 ggagatccgc gactttgatc ttgtagtact ccgccaccgt cttctgaata ttgtcgatgg
     6001 tgaccagttt ttcctgcaat gccagcaagt cgcgcagcgc ctcacgcacg aagtcgatgg
     6061 tgatcgcccg tccggtaaag ttggcattgg caatgacgcg gttcagcgcc ccttccagct
     6121 cacgtacgtt agatcgtaga cgcttggcga taaagaacgc cacttcgccc ggcaaaagaa
     6181 tgtcgttttc gtcggccttt ttcatcagga tcgccacacg ggtttccagc tctggcggtt
     6241 cgatcgccac agtcagtccc caaccgaagc gggatttcaa acgatcctca acgccgttga
     6301 tctctttcgg atagcgatcc gaggtgagaa tgatctgttg attaccttcc agcagggcgt
     6361 tgaaggtatg gaaaaactct tcctgagatc gttctttatt agcaaaaaac tgaatatcgt
     6421 cgatcagcag tgcatctacg gaacggtagt agcgtttaaa ctcttcgatc gcgttgtttt
     6481 gcagggcttt aaccatgtcc tgaacaaagc gctcggagtg catataaacc actttggcat
     6541 tcggcttgcg cgccataatg ccgttaccca ccgcatgcag caggtgagtt ttacccagac
     6601 ccgtgccgcc ataaaggaac aacgggttat aggcaccgcc agggttatcc gccacctggc
     6661 gagccgccgc gcgcgccagt tggttagatt taccttcaac gaagttatca aacgtgtgtt
     6721 tgacgtttac gttagaacga taggtcggtt ctgccggggc cgggacgtta tcccaacctg
     6781 agcgcgtaga aggcgcagca cgttgcggct gcgtttgcgc cacctgtgca ggggccgcga
     6841 cgttgctcgt cactgccgct tgtggcgttt gcgtcaccgg tttggtgccg acttcaaaac
     6901 gcagctgtgg ggcatccgct ccgcagaaac tggttagcag tccattgata ttattaaggt
     6961 acttgtcccg tacccaatcg aggacaaaac ggtttggcgc gtacagggcc agcgtgttat
     7021 cgctcagttc cgcctgcaat gggcgtatcc acatactgaa ttctgtggct ggtaactcat
     7081 cctgcaatcg ggcaagacac tgctgccaaa gcgaaagtga cacggcggac tccactcgaa
     7141 caaaagtcga taatgactaa ggctgaaaca ttcatgattg ttgacgtacg tcgaaaagac
     7201 cctgcttgag ggtgacgcac gaaccgctgt ctgcggttat atgcccgatc aagatcctgc
     7261 aaaacgatcg ggaccgcgga tcatagccta aactgcgcaa gagatcttct gtttctcaca
     7321 gattttcccg atttatccac aggactttcc agaactcgct aagtgtaaac gatcctgccg
     7381 cgaggcgggc atgatttacg ccgcatattg aaaaatttaa tgaccataga caaaaattgg
     7441 cttaatcgat ctaataaaga tctaggacga tccttgcgct ttacccatca gcccgtataa
     7501 tcctccaccc ggcgcgccat gctggtttcc actggtgtga ggtcgtacat tttccctgcg
     7561 aaaaggtgcg gaaaagcgcg gtaaataagg aaagagaatt gactccggag tgtacaatta
     7621 ttacaatccg gcctctttaa tcacccatgg cttcggtgtc catcgtttca tttttcggcg
     7681 gatatccaat aaagccattg aatttattca agtttaggta gaaatcgcca tgaaacgcac
     7741 ttttcaaccg tctgtactga agcgcaaccg ttctcacggc ttccgcgctc gtatggctac
     7801 taaaaatggt cgtcaggttc tggcacgtcg tcgtgctaaa ggccgagctc gtctgaccgt
     7861 ttctaagtaa taaagctaac ccctgagtgg ttaagctcgc atttcccagg gagttacgct
     7921 tgttaactcc cagtcaattc acattcgtct tccagcagcc acaacgggct ggcacgccgc
     7981 aaattaccat tctcggccgc ctgaattcgc tggggcatcc ccgtatcggt cttacagtcg
     8041 ccaagaaaaa cgttcgacgc gcccatgaac gcaatcggat taaacgtctg acgcgtgaaa
     8101 gcttccgtct gcgccaacat gaactcccgg ctatggattt cgtggtggtg gcgaaaaaag
     8161 gggttgccga cctcgataac cgtgctctct cggaagcgtt ggaaaaatta tggcgccgcc
     8221 actgtcgcct ggctcgcggg tcctgatagc cctcattcgg gtctatcaac gcctgattag
     8281 tccgctactc gggccgcatt gtcgtttcac tccaacctgt tcaagctacg gaattgaggc
     8341 attgcgcagg tttggagtga taaaaggcag ttggttgacg gtgaaacgcg tattaaaatg
     8401 ccacccttta caccctggtg gtgacgatcc cgtcccgccc ggaccatttg ataccagaga
     8461 acactaacga tggattcgca acgcaatctt ttagtcatcg ctttgctgtt cgtgtctttc
     8521 atgatctggc aagcctggga gcaggataaa aacccgcaac ctcaggccca acagaccacg
     8581 cagacaacga ccaccgcagc gggtagcgcc gccgaccagg gcgtaccggc cagtggccag
     8641 gggaaactga tctcggttaa gaccgacgtg cttgatctga ccatcaacac ccgtggtggt
     8701 gatgttgagc aagctctgct gcctgcttac ccgaaagagc tgaactctac ccagccgttc
     8761 cagctgctgg aaacttcacc gcagtttatt tatcaggcac agagcggtct gaccggtcgt
     8821 gatggcccgg ataacccggc taacggcccg cgtccgctgt ataacgttga aaaagacgct
     8881 tatgtgctgg ctgaaggtca aaacgaactg caggtgccga tgacgtatac cgacgcggca
     8941 ggcaacacgt ttaccaaaac gtttgtcctg aaacgtggtg attacgctgt caacgtcaac
     9001 tacaacgtgc agaacgctgg cgagaaaccg ctggaaatct ccacctttgg tcagttgaag
     9061 caatccatca ctctgccacc gcatctcgat accggaagca gcaacttcgc actgcacacc
     9121 ttccgcggcg cggcgtactc cacgcctgac gagaagtacg agaaatacaa gttcgatacc
     9181 attgccgata acgaaaacct gaacatctct tcgaaaggtg gttgggtggc aatgctgcaa
     9241 cagtatttcg cgacggcgtg gatcccgcat aacgatggta ccaacaactt ctataccgct
     9301 aatctgggta acggcatcgc cgctatcggc tataaatctc agccggtact ggttcagcct
     9361 ggtcagactg gcgcgatgaa cagcaccctg tgggttggcc cggaaatcca ggacaaaatg
     9421 gcagctgttg ctccgcacct ggatctgacc gttgattacg gttggttgtg gttcatctct
     9481 cagccgctgt tcaaactgct gaaatggatc catagctttg tgggtaactg gggcttctcc
     9541 attatcatca tcacctttat cgttcgtggc atcatgtacc ctctgaccaa aacgcagtac
     9601 acctccatgg cgaagatgcg tatgctgcag ccgaagattc aggcaatgcg tgagcgtctg
     9661 ggcgatgaca aacagcgtat cagccaggaa atgatggcgc tgtacaaagc tgagaaggtt
     9721 aacccgctgg gcggctgctt cccgctgctg atccagatgc caatcttcct ggcgttgtac
     9781 tacatgctga tgggttccgt tgaactgcgt caggcaccgt ttgcactgtg gatccacgac
     9841 ctgtcagcac aggacccgta ctacatcctg ccgatcctga tgggcgtaac gatgttcttc
     9901 attcagaaga tgtcgccgac cacagtgacc gacccgatgc agcagaagat catgaccttt
     9961 atgccggtca tcttcaccgt gttcttcctg tggttcccgt caggtctggt gctgtactat
    10021 atcgtcagca acctggtaac cattattcag cagcagctga tttaccgtgg tctggaaaaa
    10081 cgtggcctgc atagccgcga gaagaaaaaa tcctgattcg gtgagttttc gctaaaataa
    10141 gggcggtcag ttgaccgcct tttttctttt cgtagggcgg ataagcaccg cgcatccgcc
    10201 acacaaagca acaggaacat catgagcgat aatgacacta tcgtagccca ggccacgcct
    10261 ccgggacgtg gcggcgttgg catcctgcgc atctccggct tcaaagcccg tgaagttgcc
    10321 gaaaccgtgc tgggtaaact gcctaagccg cgctacgccg attatcttcc gtttaaagac
    10381 gccgacggca gcgtgctcga tcaggggatt gcgctatggt tccctggccc gaactcgttc
    10441 actggcgaag atgtgctgga actgcaaggt catggcggtc cggtgatcct cgacctgctg
    10501 ttaaaacgca ttctgaccat tcccggcctg cggattgctc gccctggtga gttttccgaa
    10561 cgcgcgtttc ttaacgataa acttgactta gcccaggccg aggcgattgc cgatcttatc
    10621 gacgccagtt cggaacaggc ggcccgttcg gcacttaact cgctgcaagg cgcattctcc
    10681 gcacgggtta atcatctggt agaagccctc acccacttgc gcatttacgt cgaagcggca
    10741 attgatttcc ccgatgaaga gatcgatttc ctctccgacg gaaaaattga agcccagctc
    10801 aatgacgtta ttgccgatct tgatgcagtg cgtgctgaag cacgtcaggg tagtttgttg
    10861 cgcgaaggga tgaaagtggt gattgccgga cgtcctaacg ccggtaaatc gagcctgtta
    10921 aacgcgctgg cggggcgtga agcggcaatc gtaaccgata tcgccggaac tacgcgtgac
    10981 gtgctgcgtg agcatatcca cattgacgga atgccgctgc atatcatcga taccgccggg
    11041 ctacgtgaag ccagtgacga agtagaacgt attggtatcg agcgcgcgtg gcaggaaatt
    11101 gaacaggccg accgcgtgct gtttatggtc gatggcacca caacagacgc cgtggatccg
    11161 gcagagatct ggccggaatt tattgcccgt ctgccagcga aactgccgat caccgtggtg
    11221 cgcaataaag ccgatatcac cggcgaaacg ctgggaatga gtgaagtgaa cggtcacgcg
    11281 ttaattcgtc tctcagcaag gactggtgaa ggcgtggacg tgctgcgtaa ccatctcaaa
    11341 cagagcatgg gctttgacac caacatggaa ggcggcttcc tggcgcgtcg tcgccaccta
    11401 caggcgctgg aacaggcagc ggaacatcta caacagggca aagcgcaact gttgggagcc
    11461 tgggcaggtg aactgctggc ggaagagttg cgtctggcac agcagaactt aagcgaaatc
    11521 accggggaat ttacttcaga cgacctgctg gggcggattt tctccagctt ctgtattggt
    11581 aagtaaccgc gcttacgaag ccgtattctg actgtcagat gcggcttcgc ttcattgtta
    11641 gcactcctgt tattcctcaa cccttttttt aaacattaaa attcttacgt aatttataat
    11701 cttaaaaaaa gcatttaata ttgctccccg aacgattgtg attcgattca catttaaaca
    11761 attttagaat agacaaaatt cttgagtatt atactgtagc ctcgtgtctt tcgaggataa
    11821 gtgcattatg aatatcttac atatatgtgt gacctcaaaa tggttcaata tcgac
//
LOCUS       DADMHM010000122        11823 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.123, whole genome shotgun sequence.
ACCESSION   DADMHM010000122 DADMHM010000000
VERSION     DADMHM010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11823)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11823)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11823
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.123"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..842
                     /locus_tag="JN125_002817"
     CDS             <1..842
                     /locus_tag="JN125_002817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HAY8872544.1"
                     /translation="NYRNELLHGETLYLDNPRSNKKGRIVRTVDNYIALLCSLLRFAY
                     QSGFISTKPFEGVKKLQRNRIKPDPLSKTEFNALMESEKGQSQNLWKFAVYSGLRHGE
                     LAALAWEDVDFEKGIVNVRRNLTILDMFGPPKTNAGIRTVTLLQPALEALKEQYKLTG
                     HHRKSEITFYHREYGRTEKQKLHFVFMPRVCNEKQKPYYSVSSLGARWNAAVKRAGIR
                     RRNPYHTRHTFACWLLTAGANPAFIASQMGHETAQMVYEIYGMWIDDMNDEQIAMLNA
                     RLS"
     gene            894..1829
                     /gene="ttcA"
                     /locus_tag="JN125_002818"
     CDS             894..1829
                     /gene="ttcA"
                     /locus_tag="JN125_002818"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HAY8872545.1"
                     /translation="MQENQQITKKEQYNLNKLQKRLRRNVGEAIADFNMIEEGDRIMV
                     CLSGGKDSYTMLEILRNLQQSAPINFSLVAVNLDQKQPGFPEHVLPVYLEKLGVEYKI
                     VEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDILQTLFL
                     NMFYGGKMKGMPPKLMSDDGKHIVIRPLAYCREKDIQRFADAKAFPIIPCNLCGSQPN
                     LQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTNLFDFKGITHGSEVVNGGD
                     LAFDREEIPLQPAGWQPEEEENQLDELRLNVVEVK"
     gene            complement(1958..3331)
                     /gene="dbpA"
                     /locus_tag="JN125_002819"
     CDS             complement(1958..3331)
                     /gene="dbpA"
                     /locus_tag="JN125_002819"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase DbpA"
                     /protein_id="HAY8872546.1"
                     /translation="MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAATLPAILAGKDVR
                     VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTK
                     ILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLD
                     MGFSDAIDDVIRFAPASRQTLLFSATWPEAIAVISGRVQRDPLAIEIDSTDALPPIEQ
                     QFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSLHGDLE
                     QRDRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTAR
                     AGNSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVPLEAEMATLCIDGGKK
                     AKMRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKT
                     CRVRLLK"
     gene            complement(3809..4792)
                     /gene="zntB"
                     /locus_tag="JN125_002820"
     CDS             complement(3809..4792)
                     /gene="zntB"
                     /locus_tag="JN125_002820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZntB"
                     /protein_id="HAY8872547.1"
                     /translation="MEAIKGSDVNVPDAVFAWMLDGRGGVKPLENTDVIDEAHPCWLH
                     LNYVHHDSAQWLATTPLLPNNVRDALAGESTRPRVSRLGEGTLITLRCINGSTDERPD
                     QLVAMRVYMDGRLIVSTRQRKVLALDDVVSDLEEGTGPTDCGGWLVDVCDALTDHSSE
                     FIEQLHDKIIDLEDNLLDQQIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPW
                     MSDDQRRRMQDIADRLGRGLDEIDACIARTGVMADEIAQVMQENLARRTYTMSLMAMV
                     FLPSTFLTGLFGVNLGGIPGGGWQFGFSIFCILLVVLIGGVALWLHRSKWL"
     gene            5047..6279
                     /gene="dgcM"
                     /locus_tag="JN125_002821"
     CDS             5047..6279
                     /gene="dgcM"
                     /locus_tag="JN125_002821"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309952.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase DgcM"
                     /protein_id="HAY8872548.1"
                     /translation="MITHNFNTLDLLTSPVWIVSPFEEQLIYANSAARLLMQDLTFSQ
                     LRTGPYSVSSQKELPKYLSDLQNQHDIIEILTVQRKEEETALSCRLVLRELTETEPVI
                     IFEGIEAPATLGLKASRSANYQRKKQGFYARFFLTNSAPMLLIDPSRDGQIVDANLAA
                     LNFYGYNHETMCQKHTWEINMLGRRVMPIMHEISHLPGGHKPLNFVHKLADGSTRHVQ
                     TYAGPIEIYGDKLMLCIVHDITEQKRQEEQLEHAAHHDAMTGLLNRRQFYHITEPGQM
                     QHLAIAQDYSLLLIDTDRFKHINDLYGHSKGDEVLCALARTLESCARKGDLVFRWGGE
                     EFVLLLPRTPLDTALSLAETIRVSVAKVSISGLPRFTVSIGVAHHEGNESIDELFKRV
                     DDALYRAKNDGRNRVLAA"
     gene            complement(6300..6863)
                     /gene="smrA"
                     /locus_tag="JN125_002822"
     CDS             complement(6300..6863)
                     /gene="smrA"
                     /locus_tag="JN125_002822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA endonuclease SmrA"
                     /protein_id="HAY8872549.1"
                     /translation="MNLDDKSLFLDAMEDVQPLKRATDVHWHPTRNQRAPQRIDTLQL
                     DNFLTTGFLDIIPLSQPLEFRREGLQHGVLDKLRSGKYPQQASLNLLRQPVEECRKMV
                     FSFIHQALADGLRNVLIIHGKGREDKSHANIVRSYVARWLTEFDDVQAYCTALPHHGG
                     SGACYVALRKTAQAKQENWERHAKRSR"
     gene            complement(7193..8101)
                     /locus_tag="JN125_002823"
     CDS             complement(7193..8101)
                     /locus_tag="JN125_002823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY8872550.1"
                     /translation="MAFQVKIHQIRAFVEVARQGSIRGASRMLNMSQPALSKSIQELE
                     EGLAAQLFFRRSKGVTLTDAGESFYQHASLILEELRAAQEDIRQRQGQLAGQINIGMG
                     ASISRSLMPAVISRFHQQHPQVKVRIMEGQLVSMINELRQGELDFTINTYYQGPYDHE
                     FTFEKLLEKQFAIFCRPGHPAIGARSIKQLLDYSWTMPTPHGSYYKQLSELLDDQAQT
                     PQVGVVCETFSACISLVAKSDFLSILPEEMGCDPLHGQGLVMLPVSEILPKAAYYLIQ
                     RRDSRQTPLTPSLITQFRRECGYLQS"
     gene            8277..9430
                     /locus_tag="JN125_002824"
                     /pseudo
     CDS             8277..9430
                     /locus_tag="JN125_002824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415854.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="M20 family metallo-hydrolase"
     gene            9430..10875
                     /locus_tag="JN125_002825"
     CDS             9430..10875
                     /locus_tag="JN125_002825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HAY8872551.1"
                     /translation="MQEIYRFIDDAIEADRQRYTDIADQIWDHPETRFEEFWSAEHLA
                     SALESAGFTVTRNVGYIPNAFIASFGQGKPVIALLGEYDALAGLSQQAGCAQPTSVTP
                     GENGHGCGHNLLGTAAFAAAIAVKKWLEQYGQGGTVRFYGCPGEEGGSGKTFMVREGV
                     FDDVDAALTWHPEAFAGMFNTRTLANIQASWRFKGIAAHAANSPHLGRSALDAVTLMT
                     TGTNFLNEHIIEKARVHYAITNSGGISPNVVQAQAEVLYLIRAPEMTDVQHIYDRVAK
                     IAEGAALMTETTVECRFDKACSSYLPNRTLENAMYHALSHFGTPEWNSEELAFTKQIQ
                     ATLPPNDRQNSLNNIAATGGENGKAFALRHRETVLANEVAPYAATDNVLAASTDVGDV
                     SWKLPVAQCFSPCFAVGTPLHTWQLVSQGRTSIAHKGMLLAAKTMAATTLNLFIDSGL
                     LQECQQEHQQVTDTQPYHCPIPKNVTPSSLK"
     gene            10912..>11823
                     /locus_tag="JN125_002826"
     CDS             10912..>11823
                     /locus_tag="JN125_002826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415852.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="p-aminobenzoyl-glutamate transporter"
                     /protein_id="HAY8872552.1"
                     /translation="MSMSSIPSSSQSGKLYGWVERIGNKVPHPFLLFIYLIIVLMVTT
                     AILSAFGVSAKNPTDGTPVVVKNLLSVEGLHWFLPNVIKNFSGFAPLGAILALVLGAG
                     LAERVGLLPALMVKMASHVNVRYASYMVLFIAFFSHISSDAALVIMPPMGALIFLAVG
                     RHPVAGLLAAIAGVGCGFTANLLIVTTDVLLSGIRTEAAAAFNPQMHISVIDNWYFMA
                     SSVVVLTIVGGLITDKIIEPRLGQWQGNSDEKLQTLTESQRFGLRIAGVVSLLFIAAI
                     ALMVIPENGILRDPINHTVMPSPFIKGI"
BASE COUNT         3059 a         2978 c         2920 g         2866 t
ORIGIN      
        1 taaactaccg gaatgaactg ctgcatggag aaacgcttta cctagataat ccaagatcca
       61 acaaaaaagg aagaatcgtg cgcacagttg ataactatat cgccctgctc tgttcgttgt
      121 tacgttttgc gtatcagtcg ggatttatat caaccaaacc atttgaagga gtaaaaaaat
      181 tacagcgaaa cagaataaaa cctgacccgt tatctaaaac agaattcaat gcattaatgg
      241 aaagtgaaaa aggacagagc caaaacttgt ggaaatttgc cgtttactcc gggcttcgtc
      301 acggggaact ggcagctctg gcgtgggagg atgtggattt cgagaaggga attgtgaatg
      361 tcagaagaaa cctgacgata cttgatatgt tcggtccccc aaaaacaaat gccgggatcc
      421 ggacggtaac attactgcag ccggctcttg aagcactgaa ggagcaatac aaactgaccg
      481 ggcatcatcg caaaagcgaa atcacttttt atcatcggga gtacggcaga actgaaaagc
      541 aaaaactgca ttttgttttc atgcccaggg tgtgtaacga aaaacagaaa ccttattact
      601 cggtaagcag tttgggtgca agatggaatg cagcagtaaa acgtgctggt attcgccgcc
      661 gtaatccgta ccatacgcga catacttttg cctgctggct gttgacggca ggagcgaacc
      721 cggcatttat agccagccag atggggcatg aaactgcgca aatggtgtat gaaatttacg
      781 gtatgtggat tgatgacatg aacgacgaac agatagccat gttgaatgcg cggttatcgt
      841 agttgcaaag tttgccccca atttgcccca tttagtacca gagaactgaa ataatgcaag
      901 aaaatcaaca aattacaaag aaagaacaat acaacctgaa caaattacaa aaacgtctac
      961 gtcgtaacgt gggcgaagcc attgctgact tcaatatgat tgaagaaggc gatcgcatca
     1021 tggtttgcct ctcagggggt aaagacagct ataccatgct ggagattctg cgcaatttgc
     1081 agcaaagcgc gccaatcaat ttttcgctgg tggctgttaa cctcgatcaa aagcaaccgg
     1141 gcttcccaga acacgttctg cccgtgtatc ttgaaaagct gggcgttgag tacaagattg
     1201 tcgaagagaa cacttacggt atcgtgaaag agaagattcc agagggcaaa accacttgct
     1261 cactgtgttc tcgccttcgt cgcggtatcc tttatcgtac cgcaacggaa ctgggggcga
     1321 cgaagatcgc gctgggtcac catcgtgacg atatcctgca gacgttgttc ttaaatatgt
     1381 tctacggcgg caagatgaaa ggtatgcctc cgaaactgat gagcgatgat ggcaaacata
     1441 tcgttattcg tccgctggcc tactgccgcg agaaagatat tcagcgattt gccgatgcaa
     1501 aagcgttccc gattattccg tgcaacctgt gcggttcaca gcctaacctg caacgtcagg
     1561 tgattgctga catgttgcgt gactgggata aacgttatcc agggcgtatc gagacgatgt
     1621 tcagcgcgat gcagaatgtg gtgccgtcgc atctgtgcga taccaacctg ttcgatttca
     1681 aaggcatcac ccacggttct gaagtggtta acgggggtga tctggcgttt gatcgcgaag
     1741 agatcccact acaaccggcg ggctggcagc cagaagaaga ggaaaatcag ttggatgagt
     1801 tacggctgaa tgtggttgaa gtgaaataac caggatagcg cccgatgcgc aagcgtatcg
     1861 ggctactctt atggaggccg gataagacgc ggccaacgtc gcatccggca atgccgaaga
     1921 agatgtttac tcttgcaccc ggcaattcaa catttcatta ttttaataac cgcacccggc
     1981 acgtttttcc tttaatcttc ccgccctgta actgtttcca tgctttatga gcaacagcct
     2041 gacggaccgc gacatagaca tgcgccggat gcacggcgat tttgccaata tctgcgccat
     2101 caagcccgat atctcctgtc agtgcaccta atacatcacc cgggcgcatt ttggcttttt
     2161 tcccgccatc gatacacaac gttgccattt ctgcttccag cggcacaatg gaactattag
     2221 ctggcggcgt ttgccagtta agttttatct gcaacatgtc agaaatgata ttggcccgct
     2281 gtgcttcttc cggagcacag aaactgatcg ccagaccgct atttcctgca cgagctgtac
     2341 ggccgatgcg atgtacatga acttcagggt cccacgccag ctcaaagttc accaccagct
     2401 caagcgattt aatatccaga ccacgcgcag caacatcagt cgcaaccagt acacgggcgc
     2461 taccgttagc aaaacgtacc agggtctgat cgcgatcgcg ttgctccaaa tcgccgtgta
     2521 atgacaatgc actttgccct acttcattca gcgcgtcgca gacagcctgg caatcttttt
     2581 tggtattgca aaacaccacg caagaggatg gctgatgcaa gcttaataac cgttgcaaca
     2641 gaggaatttt gcctttgctg gatgtctcat aaaattgttg ttcaatgggt ggcaaagcat
     2701 ctgttgagtc aatttcaatc gccaaaggat cgcgttgcac tcgtccgctg attacggcga
     2761 tggcttccgg ccaggttgcc gaaaacagaa gcgtctgtcg agatgcaggc gcaaaacgga
     2821 tgacatcatc aatggcatcg ctaaatccca tatccagcat gcggtcggcc tcatccatca
     2881 ccaaagtatt cagcgcatcc agtgataccg tgcctttttg caagtgatcc agcaaacgac
     2941 ccggcgttgc cacgataata tgcggcgcat gttgcaacga atcacgctgc ataccgaacg
     3001 gttgaccacc gcacaacgtc aaaattttgg tatttggcag aaaacgcgcc agccgacgca
     3061 attcacctgc cacctgatcc gccagttcac gcgtaggaca cagcactaaa gcctgggttt
     3121 gaaatagcga cgcatcaatt tgctgtaaca agccgaggcc aaaagccgcc gttttgccgc
     3181 tgccggtttt cgcctgcacg cgaacatctt ttccggcaag gatcgccgga agcgtggcgg
     3241 cctgcaccgg cgtcatagtt aaataaccca actcattaag gttcgtgagt tgggcgggag
     3301 gcaaaacatt cagggtagaa aaagcggtca caatctattc tcgtggtcat cgacgcaaag
     3361 ttagcaggcg cgtatcctcg cagatctacg ctcacgatgc gacaatttaa tcggttcttc
     3421 atcgggtggt gggtcaggca tgggttgcgg gcgagggatc ggatcgggca ctggaacagg
     3481 atcgccagga atcggttcag ggacaggaat ttgcaaataa ataagtgtcg tcatatttcc
     3541 ctccggtcat tgggtggact cttaaagggt agacgctgat aaataacagg caaaaaaaag
     3601 ccgactcatc aaagtcggcg tcgtacgaat caattgtgct atgcagtaat tcaaaaaagg
     3661 aagtaagaca atatggagcg caacgcccat cgcttgacgt tgcattcacc tgcaagggag
     3721 atattgccct gaatgggtag agagtttatt gacttcgctc aaactttgcg gcgtttttgt
     3781 atacagacag ccggaaaaat tgcttttgtt acaaccattt actacgatgc aaccataaag
     3841 caacaccacc aataagaaca actaacagaa tacaaaaaat tgaaaatccg aattgccacc
     3901 cgccgccagg gatcccacca aggttgacgc caaataaccc tgtcagaaag gtactgggta
     3961 aaaagaccat tgccatcaat gacattgtat aggtacgacg agctaaattt tcctgcatca
     4021 cctgagcgat ttcatccgcc atcacgccag tccgtgctat acaggcgtcg atttcgtcaa
     4081 gaccgcgccc aaggcgatcg gcaatatcct gcatccgacg gcgttggtca tcgctcatcc
     4141 acggcaaacg ttcactggca agacgagcat aaacatcacg ttgcggtgcc atatagcgac
     4201 gcatcacgat taattgtttg cgcagcagag ccaggaatcc acgcggtgga atttgctgat
     4261 caaggagatt atcttcaagg tcgataattt tatcgtgcag ctgctcgata aattcgctgg
     4321 aatgatcggt caacgcatcg cacacatcca ccagccaccc tccgcaatcg gtcggacccg
     4381 tgccctcttc cagatcgctc accacatcgt ccagcgccag cactttgcgt tgtcgggtcg
     4441 aaacaattaa ccgcccgtcc atatatacac gcatggcgac cagttgatcg gggcgttcat
     4501 cggtgctgcc gtttatacag cgcaatgtaa tcagcgtgcc ttcaccgaga cggctgactc
     4561 ggggccgtgt gctctcgcct gccagcgcat cacgtacgtt attgggaagc agcggtgttg
     4621 tcgccagcca ttgggcgcta tcatggtgta cataattaag gtggagccag cagggatgcg
     4681 cttcatcaat cacatctgta ttttccagcg gtttaacgcc gcctctacca tccagcatcc
     4741 aggcaaatac tgcatccggg acattaacgt ccgatccctt aatcgcttcc acagtgcctc
     4801 catcatcaac gcattatttt gtagtctagc cttctggccc tgttacgcaa catctcatca
     4861 ccctattacc ctgaaatgat taataaaatt ctgtctaaat tgaatacaaa aagcaaaatg
     4921 cttttccgta tacaaaccgt gtgaagtgtt aaatagcgtc tatcattatc agaattatct
     4981 gatcatatga cgtggctttt ttgcgatcgg atagcaacaa aaattgataa aaataacggg
     5041 atctcaatga ttacgcacaa cttcaatacc ctggacttac tcaccagtcc tgtctggatt
     5101 gtttcgccct ttgaggaaca gttaatttat gccaatagcg cggcgcgact gttgatgcaa
     5161 gacctcacgt ttagtcagct acgaaccgga ccctattccg tctcctcaca aaaagaactg
     5221 ccgaaatacc tctccgatct gcaaaaccaa cacgatatta tcgaaatcct cactgttcag
     5281 cgtaaagaag aggaaacagc attaagctgt cggcttgttt tgcgagagct gacagaaaca
     5341 gaaccggtga ttattttcga aggtatcgaa gcgccggcaa cgctgggttt aaaagccagt
     5401 cgctcggcaa attatcagcg caaaaaacaa ggtttttatg cgcgcttttt tctgactaac
     5461 tctgcaccaa tgttgttgat tgacccctca cgagatggcc aaatcgtcga tgctaacctc
     5521 gccgcgctca atttctacgg ttataaccat gaaacgatgt gccagaaaca tacctgggaa
     5581 attaatatgc tcgggcgtcg cgtcatgcct atcatgcatg aaatttcgca tttacccggc
     5641 ggtcataaac ctttgaattt tgttcataaa ctggcggatg gatctactcg tcatgtgcag
     5701 acctatgccg ggccgattga aatttatggc gacaagctca tgttatgtat tgtgcatgat
     5761 attactgagc aaaaacggca ggaggagcag ctggaacatg ctgctcacca tgacgcgatg
     5821 accggattac tgaatcggcg acagttttat cacattacgg aaccaggcca aatgcagcac
     5881 ctcgccatcg cccaggatta cagcttgttg ctcatcgaca ccgatcgttt taaacacatt
     5941 aacgatctct atgggcattc taaaggtgat gaggtgttat gcgccctcgc ccgcaccctc
     6001 gaaagttgcg ctcgcaaagg cgatttggtg tttcgttggg gaggcgaaga gtttgtctta
     6061 ttgctaccaa gaaccccact ggatactgcg ctttcgctgg ctgaaactat ccgtgtaagc
     6121 gtggccaaag tgagtatttc gggcttacca cgttttaccg tcagcattgg tgtggcgcat
     6181 cacgaaggaa atgaaagcat cgatgaactg tttaaacgcg ttgatgatgc tttgtatcgg
     6241 gcgaaaaatg atggacgcaa ccgcgtgctg gcggcataag ccgcggatgc gtctcgagat
     6301 caacggctgc gcttagcgtg gcgctcccag ttttcttgct tcgcctgcgc cgttttacgt
     6361 agtgcgacgt aacacgcccc gctgccgcca tgatgcggta gcgcggtgca atatgcctga
     6421 acatcatcaa attcggtcag ccagcgcgcc acatagctgc ggacaatatt ggcatgcgat
     6481 ttatcttccc gccctttacc atgaataatc aacacattac gcaaaccatc cgccagggct
     6541 tggtgaatga aactgaacac cattttgcgg cactcttcca ccggctggcg caaaagattc
     6601 aggctcgcct gttgcggata tttaccactg cgcagcttat ccagcacccc atgttgcaac
     6661 ccttcccgcc gaaactccag cggctgactt agcgggatga tgtcgagaaa tccggtggtg
     6721 aggaaattat caagctgcag cgtgtcgata cgctgcggcg cacgttggtt acgcgttgga
     6781 tgccagtgga catctgtagc acgtttcagc ggctggacat cttccatggc gtcaagaaac
     6841 agcgatttgt cgtcaaggtt catgttacat cctcccgcaa ttaagagcgc gatatgataa
     6901 ccagaccggg tcggtccaac aacgtattac ccaaaattcc agtaataagt tccaaatatt
     6961 gccgatattt taagcaaaat gcttatgcat gattattcat tcacgatatt aataatgtaa
     7021 cttatatttt cgtgaaatct gtcactgaag aaaattggca actaaaggtt aaaaccgtta
     7081 taacacagtc accggcgcag aggagacaat gccggactta agacgcggat gcactgctgt
     7141 gtgtactgta gagtctggcg gatgtcgaca gactctattt ttttatgcag ttttaacttt
     7201 gcagatagcc gcattctcgc cggaattgcg tgattaatga cggggtcagt ggtgtctggc
     7261 gactatcacg ccgctgaatc aaataatagg ccgctttcgg taaaatttcg ctaaccggca
     7321 acatcaccag cccctgtccg tgcaagggat cgcagcccat ttcttcaggc agtatgctga
     7381 gaaaatcgct ttttgccacc agactgatac aggctgagaa cgtctcgcag actacaccga
     7441 cctgtggcgt ttgcgcctga tcgtcaagca attcactcaa ctgtttgtag taactgccgt
     7501 gtggcgtcgg cattgtccag ctgtaatcca gtaactgttt gatcgaacgg gcaccaatgg
     7561 cggggtgtcc cgggcggcaa aagatcgcga attgcttttc cagtaatttc tcaaaagtaa
     7621 attcgtggtc gtacggtccc tgataatagg tattgatggt gaaatccaat tctccctgac
     7681 gcaattcatt aatcatcgac accagttgcc cttccataat gcgtactttt acctgcggat
     7741 gctgctgatg aaaacgagat atgacagctg gcatcagact gcgggaaata ctggccccca
     7801 tgccgatatt aatctgccct gccagttgcc cttgtcgttg gcgaatatcc tcttgggctg
     7861 cgcgcagctc ttcaagaata agactggcgt gctgataaaa actttcaccg gcatcagtta
     7921 acgtcacgcc tttactacgg cgaaaaaaga gttgcgccgc taatccttct tccaactcct
     7981 gaatagattt actcagtgcc ggttgcgaca tattcaacat tcggctcgct ccgcgaatgc
     8041 tgccctgacg agccacttca acaaaagcac gaatttgatg aatttttacc tgaaaagcca
     8101 tgacgccacc gataaccgtt atttatcaga ccaaagaaac tggcatctac tttaatgcag
     8161 atgattgtgt cagggtaatt tatgaacggt taaaactgtg aaaaatcagt tagtgataag
     8221 taaaaactat cgctacgtga accgggtcac actttttact gatgacggga aaggttatgg
     8281 agtctttgaa tcaatttgtt aattcgcttg ccccaaaatt atcgcactgg cgacgtgatt
     8341 ttcatcacta tgcagagtct ggctgggtgg aattccgcac tgccaccctt gttgcggaag
     8401 aattgcagca gctcggctat tcactggcgc tgggccgcga agtagttaat gaaagtagcc
     8461 ggatgggact acctgatgaa ctcactctac aacgcgaatt cgagcgcgct cgtcaacagg
     8521 gtgcgctagc acaatggatt gcggtttttg aaggtggttt cactggtatc gtcgccaccc
     8581 tggataccgg tcgccccggt ccggtgatgg ctttccgtgt cgatatggac gcgctggatc
     8641 tcagtgaaga gcaggatgtc agccatcgcc cctaccgcga cggttttgcg tcatgtaacg
     8701 ccggaatgat gcatgcctgt ggtcatgatg gacataccgc cattgggctt gggctggcgc
     8761 atacccttaa acaattcgag tccggactac atggcgtcat caaactgatt tttcagcctg
     8821 cagaggaagg tacgcgtggc gcgcgggcgc aaaaccagaa gacggtcaca atgccttgtt
     8881 ggcggcagca caagccactc ttgcactgca tgcaatcgcc ccgcacagcg aaggagcttc
     8941 cagagtaaac gtgggcgtta tgcaggcagg aagcggtcgt aacgttgttc ctgcctcggc
     9001 gttgctgaaa gtggaaacac gcggggccag cgacgtcatt aatcaatatg tttttgaccg
     9061 tgcacaacaa gcgattcagg gcgcagcaac catgtatggt gtcggcgttg aaactcgtct
     9121 gatgggtgca gctaccgcca gttctccttc gccgcaatgg gtcgcatggt tgcaaagtca
     9181 ggcggctcag gtcgcggggg tcaatcaggc cattgaacgt gttgaagcgc ctgcgggttc
     9241 cgaagatgcc acattaatga tggcccgcgt gcagcaacat caagggcaag cctcctacgt
     9301 ggtgtttggc acacagctgg cggcaggtca tcacaacgaa aaattcgatt ttgacgagca
     9361 ggttctcgct attgccgtcg aaacgctggc gcgcaccgcg ctcaattttc cctggacgcg
     9421 aggtatctga tgcaggaaat ctatcgtttt atcgacgatg cgattgaagc cgatcgccaa
     9481 cgttataccg atattgccga tcaaatctgg gatcatccag aaacacgttt tgaagagttc
     9541 tggtcagcgg agcatctggc ttcggcgctg gaatctgcag gcttcaccgt tacccgcaac
     9601 gtaggctata tcccaaatgc ctttattgct tcgtttggtc aaggcaaacc ggttatcgcc
     9661 ctgctgggag aatatgacgc cctggcaggt ttaagtcagc aagcaggttg cgcgcaacct
     9721 acatccgtga cgcccggtga aaatggtcac ggttgcggac acaatttgct gggaaccgcc
     9781 gcctttgccg ctgcaatagc cgtcaagaaa tggctggaac aatatgggca aggcggcacg
     9841 gtgcgctttt atggttgtcc tggcgaagaa ggcggctcgg gtaaaacgtt catggttcgc
     9901 gagggggtat ttgatgatgt ggatgcggca ctcacctggc acccggaagc ctttgccggt
     9961 atgttcaata cccgcacgct ggcaaacatt caggcatcat ggcgctttaa agggatcgca
    10021 gcacatgccg cgaattcccc tcatttggga cgcagcgccc ttgatgccgt aacgttgatg
    10081 accactggca ccaacttcct caacgaacat attattgaaa aagcgcgcgt acactatgcc
    10141 atcacaaata gcggcgggat ctcgcccaac gtggtccagg cgcaggcaga agtgctttat
    10201 cttatccgcg cccccgaaat gaccgacgtg cagcatattt atgatcgggt cgccaaaatc
    10261 gccgaaggtg cggcattgat gaccgaaacc acggttgaat gccgcttcga caaagcctgt
    10321 tccagttatc tcccgaatcg caccttagaa aatgccatgt accatgccct atcccatttt
    10381 ggtaccccgg aatggaactc cgaagaactg gcttttacga aacaaattca ggctacgctc
    10441 ccccccaacg atcggcaaaa cagtctgaat aatatcgccg caaccggtgg cgaaaacggc
    10501 aaggcttttg cactacgtca tcgtgaaacg gtactggcga atgaggtcgc tccatatgcc
    10561 gccaccgata acgtgcttgc ggcatcgact gatgtcggcg acgtcagttg gaaactgcct
    10621 gttgcccagt gtttcagccc ctgttttgcc gtcggtacac cgctacatac gtggcaactg
    10681 gttagccagg ggcgaacatc tattgctcat aaaggaatgc tgctggcggc gaaaactatg
    10741 gcagcaacca cactcaatct cttcattgat tcagggctat tgcaagaatg ccaacaagag
    10801 catcagcaag ttacggacac gcaaccgtat cactgcccta tcccaaaaaa cgtgacaccg
    10861 tcatctttaa aataacaaca acaacgcaaa cacaacaacc gaggaatgcc catgagtatg
    10921 tcatccatac cgtcgtcctc ccaatccggg aagctctatg gctgggtcga aagaattggt
    10981 aacaaggttc cccatccttt tttgctcttt atctatttga ttatcgtact catggtgacg
    11041 acggcaattt tgtcggcctt tggcgtcagt gcgaaaaacc cgaccgatgg aacgccggtg
    11101 gtggtgaaaa acctgctcag tgtggaagga ttacactggt ttttacccaa tgttattaaa
    11161 aactttagcg gttttgctcc acttggtgcg atcctggcgc tggttttagg tgccggtctg
    11221 gcggagcgcg tcggcttact gccagcgcta atggttaaaa tggcatcgca tgttaatgtc
    11281 cgctacgcca gttatatggt gctgtttatt gcttttttca gccacatttc ttccgatgcg
    11341 gcgttagtga tcatgccacc gatgggtgcg ctgatttttc tggcggtggg caggcatcca
    11401 gttgcaggtt tactggctgc cattgcaggc gtaggttgcg gctttacggc taatttactg
    11461 attgtcacaa ccgacgtgtt gctgtcgggg atccgcacgg aagcggcggc tgcgttcaat
    11521 ccgcaaatgc acatcagtgt aattgataac tggtatttta tggccagctc cgtagtcgta
    11581 ctgacgattg ttggcggcct gataaccgac aaaatcatcg agccacggtt aggtcaatgg
    11641 cagggaaaca gcgatgagaa actgcagaca ttgaccgaaa gtcagcgttt tggtttacgc
    11701 atagcaggtg tcgtatcgct actttttatt gctgcgatcg cgctgatggt gatcccggaa
    11761 aacgggatat tgcgcgatcc gattaatcac accgtgatgc catcaccctt tattaaaggt
    11821 atc
//
LOCUS       DADMHM010000123        11688 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.124, whole genome shotgun sequence.
ACCESSION   DADMHM010000123 DADMHM010000000
VERSION     DADMHM010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11688)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11688)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11688
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.124"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(67..714)
                     /gene="ychE"
                     /locus_tag="JN125_002827"
     CDS             complement(67..714)
                     /gene="ychE"
                     /locus_tag="JN125_002827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAAT family transporter YchE"
                     /protein_id="HAY8872553.1"
                     /translation="MIQTFFDFPVYFKFFIGLFALVNPVGIIPVFISMTSYQTAAARN
                     KTNLTANLSVAIILWISLFLGDTILQLFGISIDSFRIAGGILVVTIAMSMISGKLGED
                     KQNKQEKSETAVRESIGVVPLALPLMAGPGAISSTIVWGTRYHSISYLFGFFVAIALF
                     ALCCWGLFRMAPWLVRVLRQTGINVITRIMGLLLMALGIEFIVTGIKGIFPGLIN"
     gene            1192..3867
                     /gene="adhE"
                     /locus_tag="JN125_002828"
                     /gene_synonym="adhC"
     CDS             1192..3867
                     /gene="adhE"
                     /locus_tag="JN125_002828"
                     /gene_synonym="adhC"
                     /EC_number="1.1.1.1"
                     /EC_number="1.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional acetaldehyde-CoA/alcohol
                     dehydrogenase"
                     /protein_id="HAY8872554.1"
                     /translation="MAVTNVAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAAD
                     ARIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAE
                     PIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKDATNKAADIVLQAAIAA
                     GAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTP
                     VVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFATHGGYLLQG
                     KELKAVQDVILKNGALNAAIVGQPAYKIAELAGFSVPENTKILIGEVTVVDESEPFAH
                     EKLSPTLAMYRAKDFEDAVEKAEKLVAMGGIGHTSCLYTDQDNQPARVSYFGQKMKTA
                     RILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAEN
                     MLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGV
                     ETEVFFEVEADPTLSIVRKGAELANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHF
                     EELALRFMDIRKRIYKFPKMGVKAKMIAVTTTSGTGSEVTPFAVVTDDATGQKYPLAD
                     YALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHAMEAYVSVLASEFSDGQALQALKLL
                     KEYLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLA
                     NALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKL
                     LAWLETLKAELGIPKSIREAGVQEADFLANVDKLSEDAFDDQCTGANPRYPLISELKQ
                     ILLDTYYGRDYVEGETAAKKEAAPAKAEKKAKKSA"
     gene            3991..4887
                     /locus_tag="JN125_002829"
                     /pseudo
     CDS             3991..4887
                     /locus_tag="JN125_002829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904641.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
     gene            complement(5169..5786)
                     /gene="tdk"
                     /locus_tag="JN125_002830"
     CDS             complement(5169..5786)
                     /gene="tdk"
                     /locus_tag="JN125_002830"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HAY8872555.1"
                     /translation="MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRF
                     GAGKVSSRIGLSSPAKLFNQNSSLFDEIRAEHEQQAIHCVLVDECQFLTRQQVYELSE
                     VVDQLDIPVLCYGLRTDFRGELFIGSQYLLAWSDKLVELKTICFCGRKASMVLRLDQA
                     GRPYNEGEQVVIGDNERYVSVCRKHYKEALQVGSLTAIQERHRHD"
     gene            6391..6804
                     /gene="hns"
                     /locus_tag="JN125_002831"
     CDS             6391..6804
                     /gene="hns"
                     /locus_tag="JN125_002831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator H-NS"
                     /protein_id="HAY8872556.1"
                     /translation="MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEE
                     SAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDE
                     NGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ"
     gene            complement(6948..7856)
                     /gene="galU"
                     /locus_tag="JN125_002832"
     CDS             complement(6948..7856)
                     /gene="galU"
                     /locus_tag="JN125_002832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HAY8872557.1"
                     /translation="MAAINTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQY
                     VVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHV
                     TIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFD
                     ETGHSQIMVEQVADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRY
                     VLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAF
                     VEYGIRHNTLGTEFKAWLEEEMGIKK"
     gene            complement(8058..9071)
                     /gene="rssB"
                     /locus_tag="JN125_002833"
     CDS             complement(8058..9071)
                     /gene="rssB"
                     /locus_tag="JN125_002833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator RssB"
                     /protein_id="HAY8872558.1"
                     /translation="MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDAL
                     ELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGV
                     EDVLLKPVKDLNRLREMVFACLYPSMFNSRVEEEERLFRDWDATVDNPAAAAKLLQEL
                     QPPVQQVISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALL
                     LRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLI
                     LVSAGLNATLNTGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLML
                     SAE"
     gene            complement(9163..10068)
                     /gene="rssA"
                     /locus_tag="JN125_002834"
     CDS             complement(9163..10068)
                     /gene="rssA"
                     /locus_tag="JN125_002834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707140.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase RssA"
                     /protein_id="HAY8872559.1"
                     /translation="MRKIKIGLALGSGAARGWSHIGVINALKKVGIEIDIVAGCSIGS
                     LVGAAYACDRLSALEDWVTSFSYWDVLRLMDLSWQRGGLLRGERVFNQYREIMPETEI
                     ENCSRRFAAVATNLSTGRELWFTEGDLHLAIRASCSIPGLMAPVAHNGYWLVDGAVVN
                     PIPISLTRALGADIVIAVDLQHDAHLMQQDLLSFNVSEENSENGESLPWHARLKERLG
                     SITTRRAVTAPTATEIMTTSIQVLENRLKRNRMAGDPPDILIQPVCPQISTLDFHRAH
                     AAIAAGQLAVERKMDELLPLVRTNI"
     gene            10181..10639
                     /locus_tag="JN125_002835"
     CDS             10181..10639
                     /locus_tag="JN125_002835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YchJ family protein"
                     /protein_id="HAY8872560.1"
                     /translation="MSQLCPCGSAVEYSLCCHPYVSGEKVAPDPEHLMRSRYCAFVMQ
                     DADYLIKTWHPSCGAAALRAELMAGFAHTEWLGLTVFEHCWQDADNIGFVSFVARFTE
                     GGKTGAIIERSRFLKENGQWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ"
     gene            10689..11531
                     /gene="purU"
                     /locus_tag="JN125_002836"
     CDS             10689..11531
                     /gene="purU"
                     /locus_tag="JN125_002836"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HAY8872561.1"
                     /translation="MHSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHR
                     TGRFFMRTELEGIFNDSTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLL
                     MKANYGGLDVEIAAVIGNHDTLRSLVERFDIPFELVNHEGLSRNEHDQKMADAIDAYK
                     PDYVVLAKYMRVLTPEFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAH
                     YVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYKVLAQRVFVYGNR
                     TIIL"
BASE COUNT         3161 a         2911 c         2648 g         2968 t
ORIGIN      
        1 cgggaacaaa gtaaaaataa tgacgaagta aacggagcat ggcagctccg tttcatttga
       61 aaggaattaa ttaatcaggc cggggaaaat ccccttaata ccagtaacga taaattcaat
      121 ccccaatgcc atcagcaata gccccataat acgcgtaatc acgttgatgc cggtctggcg
      181 taaaacccgt accagccaag gtgccatgcg gaacaatccc cagcaacata aagcgaacaa
      241 tgcaatagcc acaaagaaac caaacagata gctaatgctg tgataacgcg taccccagac
      301 gatggtagaa ctgatcgccc ctggccccgc catcaacggc aacgccaatg gcaccacacc
      361 aatgctttca cgtaccgcgg tttctgattt ttcttgcttg ttctgtttat cctcgccaag
      421 cttgccgctg atcatcgaca tcgctatcgt caccaccagg atgcccccgg cgatacggaa
      481 cgaatcaatt gatataccaa aaagttgcag aatcgtgtcg ccgagaaaaa gcgagatcca
      541 caagataatg gccacagaca ggttggctgt aaggttagtt ttgtttcgcg ctgccgctgt
      601 ctgataactg gtcatgctga taaagacggg aataatccct accgggttga ccagcgcaaa
      661 taacccgatg aaaaatttga agtaaacggg aaaatcaaaa aaggtctgaa tcacggttag
      721 ctccgaagca aaagccggat aatgttagcc ataaataagg ttgaaaagac gcgctgacaa
      781 tacgcctttt gacagcattt ttcacctcct aactacttaa aattgctatc attcgttatt
      841 gttatctagt tgtgcaaaac atgctaatgt agccaccaaa tcatactaca atttattaac
      901 tgttagctat aatggcgaaa agcgatgctg aaaggtgtca gctttgcaaa aaatttgatt
      961 tggatcacgt aatcagtacc cagaagtgag taatcttgct tacgccacct ggaagtgacg
     1021 cattagagat aataactcta atgtttaaac tcttttagta aatcacagtg agtgtgagcg
     1081 cgagtaagct tttgattttc ataggttaag caaatcatca ccgcactgac tatactctcg
     1141 tattcgagca gatgatttac taaaaaagtt taacattatc aggagagcat tatggctgtt
     1201 actaatgtcg ctgaacttaa cgcactcgta gagcgtgtaa agaaagccca gcgtgaatat
     1261 gccagtttca ctcaagagca agtagacaaa atcttccgcg ccgccgctct ggctgctgca
     1321 gatgctcgaa tcccactcgc gaaaatggcc gttgccgaat ccggcatggg tatcgtcgaa
     1381 gataaagtga tcaaaaacca ctttgcttct gaatatatct acaacgccta taaagatgaa
     1441 aaaacctgtg gtgttctgtc tgaagacgac acttttggta ccatcactat cgctgaacca
     1501 atcggtatta tttgcggtat cgttccgacc actaacccga cttcaactgc tatcttcaaa
     1561 tcgctgatca gtctgaagac ccgtaacgcc attatcttct ccccgcaccc gcgtgcaaaa
     1621 gatgccacca acaaagcggc tgatatcgtt ctgcaggctg ctatcgctgc cggtgctccg
     1681 aaagatctga tcggctggat cgatcaacct tctgttgaac tgtctaacgc actgatgcac
     1741 cacccagaca tcaacctgat cctcgcgact ggtggtccgg gcatggttaa agccgcatac
     1801 agctccggta aaccagctat cggtgtaggc gcgggcaaca ctccagttgt tatcgatgaa
     1861 actgctgata tcaaacgtgc agttgcatct gtactgatgt ccaaaacctt cgacaacggc
     1921 gtaatctgtg cttctgaaca gtctgttgtt gttgttgact ctgtttatga cgctgtacgt
     1981 gaacgttttg caacccacgg cggctatctg ttgcagggta aagagctgaa agctgttcag
     2041 gatgttatcc tgaaaaacgg tgcgctgaac gcggctatcg ttggtcagcc agcctataaa
     2101 attgctgaac tggcaggctt ctctgtacca gaaaacacca agattctgat cggtgaagtg
     2161 accgttgttg atgaaagcga accgttcgca catgaaaaac tgtccccgac tctggcaatg
     2221 taccgcgcta aagatttcga agacgcggta gaaaaagcag agaaactggt tgctatgggc
     2281 ggtatcggtc atacctcttg cctgtacact gaccaggata accaaccggc tcgcgtttct
     2341 tacttcggtc agaaaatgaa aacggctcgt atcctgatta acaccccagc gtctcagggt
     2401 ggtatcggtg acctgtataa cttcaaactc gcaccttccc tgactctggg ttgtggttct
     2461 tggggtggta actccatctc tgaaaacgtt ggtccgaaac acctgatcaa caagaaaacc
     2521 gttgctaagc gagctgaaaa catgttgtgg cacaaacttc cgaaatctat ctacttccgc
     2581 cgtggctccc tgccaatcgc gctggatgaa gtgattactg atggccacaa acgtgcgctc
     2641 atcgtgactg accgcttcct gttcaacaat ggttatgctg atcagatcac ttccgtactg
     2701 aaagcagcgg gcgttgaaac tgaagtcttc ttcgaagtag aagcggaccc gaccctgagc
     2761 atcgttcgta aaggtgcaga actggcaaac tccttcaaac cagacgtgat tatcgcgctg
     2821 ggtggtggtt ccccgatgga cgccgcgaag atcatgtggg ttatgtacga acatccggaa
     2881 actcacttcg aagagctggc gctgcgcttt atggatatcc gtaaacgtat ctacaagttc
     2941 ccgaaaatgg gcgtgaaagc gaaaatgatc gctgtcacca ccacttctgg tacaggttct
     3001 gaagtcactc cgtttgcggt tgtaactgac gacgctactg gtcagaaata tccgctggca
     3061 gactatgcgc tgactccgga tatggcgatt gtcgacgcca acctggttat ggacatgccg
     3121 aagtccctgt gtgctttcgg tggtctggac gcagtaactc acgccatgga agcttatgtt
     3181 tctgtactgg catctgagtt ctctgatggt caggctctgc aggcactgaa actgctgaaa
     3241 gaatatctgc cagcgtccta ccacgaaggg tctaaaaatc cggtagcgcg tgaacgtgtt
     3301 cacagtgcag cgactatcgc gggtatcgcg tttgcgaacg ccttcctggg tgtatgtcac
     3361 tcaatggcgc acaaactggg ttcccagttc catattccgc acggtctggc aaacgccctg
     3421 ctgatttgta acgttattcg ctacaacgcg aacgacaacc cgaccaagca gactgcattc
     3481 agccagtatg accgtccgca ggctcgccgt cgttatgctg aaattgctga ccacctgggt
     3541 ctgagcgcac cgggcgaccg tactgctgct aagatcgaga aactgctggc atggctggaa
     3601 acgctgaaag ctgaactggg tattccgaaa tctatccgtg aagctggcgt tcaggaagca
     3661 gacttcctgg cgaacgtgga taaactgtct gaagatgcat tcgatgacca gtgcaccggc
     3721 gctaacccgc gttacccgct gatctccgag ctgaaacaga ttctgctgga tacctactac
     3781 ggtcgtgatt atgtagaagg tgaaactgca gcgaagaaag aagctgctcc ggctaaagct
     3841 gagaaaaaag cgaaaaaatc cgcttaatca gtagcgctgt ctggcaacat aaacggcccc
     3901 ttctgggcaa tgccgatcag ttaaggatta gttgaccgat ccttaaactg aggcactata
     3961 acggcttcca caacagggag ccgttttctt atgccacttc tcaatgatct gctcgatttc
     4021 agtgaccatc cgcttatgcc tccgccctct gcacaactat ttgcagaaca ccttcccacc
     4081 gagtggatac aacactgcct gacgctttct gctcatgcga ccgttcgccg ccgtcgttta
     4141 ccgggggaca tggttatctg gatggtggtg caatgagcca attaccgatg ttgttcgccg
     4201 tctgaacctg agcgcggatg gcgaagcggg gatgaacctg ctggcccgca gcgctgtcac
     4261 ccaagcgcgt cagcgcgtgg gggccgcccc agtggaatgg ctcttccgcc agaccgcaca
     4321 gacaggggcg cggaacgtta cctgaaggat gactggcacg gcctgcaact ttttgccatt
     4381 gatggcgcac agttcaggac acctgataaa cccgagctgc gtgaatatta tgggtctgcc
     4441 aacacatcca ctaagcggca gaacgcctac ccggttatgc gtctggtggc cttaatgaac
     4501 ctgggaagtc acattctgct gaatgccgtg accgcacctt accggcagag cgaaactgtg
     4561 ctggcccact ccatgctcgc caccatcccg gataactcta ttacgttgtt tgataagctt
     4621 ttttacagcg aagacctgct gctaacgctg aaccagaagg gttgtaaccg ccactggcta
     4681 ctgcctgcgt ggaagaatat cgcatcagaa atgatagagc tgggaaacac ggcgtcacca
     4741 gggaccatcc cgaaacgact ggagcatctt cggggtgctc tggaagtggt gttcataaca
     4801 aaacgccccc gaccatcaag gccgaggtcg gttaagatat caaaaacccg ttatcctgtg
     4861 aaacatagtg ccgctcctct taagtgaacg gcattgccct tctggggccg tattttttgt
     4921 ttacccaaag taacttttcc ataaaccgac agcattagcc ttcatcatat ttgcgacgat
     4981 gtataacgcc taaacacagg gatattgtac tttacaggtc acaagtcaac gtcggtgctt
     5041 aagagccctg tgaggcgtat agcggcgtta aaaaactgcc gagaagggta tatagcccgg
     5101 aagaagtgcg taaaacgaac tgacaggata aaagtgccct gctcaccctg tcagtaaaga
     5161 aattcttatt aatcgtggcg atgcctttcc tgaatagccg ttaatgagcc gacttgtaac
     5221 gcctctttat agtgtttacg gcatacagaa acgtatcgtt cattatcacc aattaccacc
     5281 tgctcacctt cgttataagg tctgcctgct tgatcaagac gcagcaccat gcttgcttta
     5341 cggccacaaa aacagatggt ttttaattca accagtttgt cggaccatgc cagtaagtat
     5401 tggctgccaa taaataattc acctcgaaaa tcggtacgta aaccataaca aagtacgggt
     5461 atatcgagtt gatcgacaac ctccgataat tcatatactt gttgtctggt taaaaactgg
     5521 cattcatcaa ccagtacgca atgaattgcc tgctgttcat gttccgcacg aatctcatca
     5581 aataatgatg aattttggtt aaataatttt gcaggcgatg acaaacctat acgcgaactg
     5641 actttcccgg caccaaagcg atcatcaatt tctgccgtat atacgacagt gcgcatgccg
     5701 cgttcttggt aattatatga agattgcaac aatgctgtag acttacccgc attcattgcg
     5761 gaatagtaga aatatagctg tgccatcagc cacaggccct caatgatatg aaataaagtt
     5821 ggctggagtt tatcataatt cgtcagtttt tcagctcaac agtatgcaca gaagtgggta
     5881 tatgcgttct cccttacgaa gccttgcata atccttctga gctatcatta caactgcctc
     5941 gcttgttata agcgggtaaa tgactgctgg taactattca caatctttaa cctgttgcgc
     6001 aagtaatagc cctctgttga cctccaggag atagtgcaat actaagtcca tgctcttatt
     6061 gcgactgttc tacttttcat cattcgctta atagggaatt ctcgtaaaca caactaatac
     6121 agaagactga aaggtcgtca gcctacgata atctccccat aaaatgtgac atgaatcagg
     6181 aagttttaac ctcacgtgct gcgaaatcat cggtgtaaat agggctatat gccgcgtctt
     6241 ttctggctaa ttttatgaaa agatatttat tggcggcaca aaataaagaa caattttgaa
     6301 ttccttacat tcctggctat tgcacaactg aatttaaggc tctattatta cctcaacaaa
     6361 ccaccccaat ataagtttga gattactaca atgagcgaag cacttaaaat tctgaacaac
     6421 atccgtactc ttcgtgcgca ggcaagagaa tgtacacttg aaacgctgga agaaatgctg
     6481 gaaaaattag aagttgttgt taacgaacgt cgcgaagaag aaagcgcggc tgctgctgaa
     6541 gttgaagagc gcactcgtaa actgcagcaa tatcgcgaaa tgctgatcgc tgacggtatt
     6601 gacccgaacg aactgctgaa tagccttgct gccgttaaat ccggcaccaa agctaaacgt
     6661 gctcagcgtc cggcaaaata tagctatgtt gacgaaaacg gcgaaactaa aacctggact
     6721 ggccagggcc gaactccagc tgtaatcaaa aaagcaatgg atgagcaagg taaatccctc
     6781 gacgatttcc tgatcaagca ataatctttt gtagattgca attgcttaaa atcccgccat
     6841 cggcgggatt ttttattgtc cggtttaaga caatttaata agaataagct ataaaaaaac
     6901 ggcgtcgatt gttcaacgcc gtttcgtgga taacaccgat atggatgtta cttcttaatg
     6961 cccatctctt cttcaagcca ggctttaaat tccgtgccaa gggtgttatg acgaataccg
     7021 tattcaacga aggcctgcat gtaacctaat ttattaccgc agtcatggct cttccctttc
     7081 atatgatagg cttccaccgt ttctttttcg atcagcatat caattgcgtc ggtgagctga
     7141 atttcatcac cagctcccgg aggggttttt gccagcaacg gccaaatatc cgcgctaagt
     7201 acgtaacgac ccacaatagc gagattagac ggcgcaacat ccgctttcgg tttttctacc
     7261 acaccaacca tcggtacact ttcacccggc gctaattcaa cgcctttgca atccacaacg
     7321 ccatatgcgg tcacatcagc aacctgttca accatgatct ggctatgacc cgtttcatca
     7381 aagcggcgga tcatctctgc taggttatcc tgtgacaaat cggattcata ttcatccaga
     7441 ataacatcag gcaaaataac agctaccggt tcatcaccca ctaccgggtg agcacacaat
     7501 accgcgtgtc ccaggccttt cgccagcccc tgacgaactt gcataatagt cacgtgcggc
     7561 ggacaaatag actgcacttc atcaagcagt tgacgtttta cacgtttttc cagcattgct
     7621 tccagttcaa aactggtatc aaagtggttt tcaatcgagt ttttagatga gtgcgtaacc
     7681 agcacaattt cagtaatgcc agccgcaata cattcattca cgacgtattg aattaatggc
     7741 ttatcgacaa gtggcagcat ctctttcggg atggctttcg tcgccggcaa catcctggtt
     7801 cctaatcccg caacggggat aacggctttt ttgactttcg tattaatggc agccatttaa
     7861 attctcctgg actgttcgtg ttttgaacgt gttcatattt ctgtatcgca tcccagtata
     7921 tcagcacccc gaaggggcta agttctgaaa aggaggcgag ttagcataat taagacaatt
     7981 acttatacga atggcgacga tagtaccacc agccgacatt agcaggtaat gcaaatttag
     8041 tccgcgttat cgtttgctca ttctgcagac aacatcaagc gcagtcgacc accagttccc
     8101 catatttggc attgccaggc atcgcatcgc tggctcaatt gattcaaata agcgttacct
     8161 aaagtgccta acggaacacc attactgatt tgcacctggt gttcgccggt atttaacgtc
     8221 gcattcagac ccgcagaaac cagaatgaga tttttcagtt cgcgatgata atagccaact
     8281 aatagcggaa actgccccgg cagattggcc tgacggagta aatggtttac ctgcttcaat
     8341 aacgcgccca gctctggcaa ccgttgattt tggtgtgcaa gctgttcctg taataatccg
     8401 ttaaacaatg cgcgtaataa caaggcagca agtacgccat tatgtccagc tcgggtgaca
     8461 tcaaggcaat aaaatgccag atcgttttcc gaaagtgcgg caatatcaag caccaggccg
     8521 ggtttgtccg cggcaaccaa ttgacgataa ttaacccggc aatgggaaat cacctgctga
     8581 accggcggtt gtagttcctg taataatttc gccgctgcgg cagggttatc aaccgttgca
     8641 tcccaatcgc gaaaaagcct ttcctcttcc tcaacgcgcg aattaaacat gctgggatag
     8701 agacaggcaa aaaccatctc gcgcaagcga ttcagatctt taactggttt cagcaaaaca
     8761 tcttcaacgc ccagacgtaa cgctttggca atatctgcca tattttcagt ggcagatatc
     8821 accagaactg gggtctggtc gcctctgtta cgtatatgct ccagcagttt aagcccgttc
     8881 attcgtggca tcgcgatatc acatatcatc aggtctggag tgaaacctcc cagcaactca
     8941 agggcatcca ccccatcagc cgccagtacc gttgtcgctc ccaatgagga aaaccatgaa
     9001 tccagaagcg agcgaaatac ctgctcatct tcaacaatga gaatctgttt tccgaccaat
     9061 ggctgcgtca tgttctctcc cctgactggc tttactcaat agtggcatgc tattgccacc
     9121 tgcgcctgtc agaattaact taagtgtaga taaaaattct ggtcaaatgt tggtgcgtac
     9181 caacggcaaa agttcgtcca ttttcctttc cactgccagc tgtccggccg caatggcagc
     9241 gtgcgcgcga tggaaatcaa gcgtagatat ttgcgggcaa acaggttgaa tcagaatatc
     9301 gggcggatca cctgccatgc ggttcctttt aaggcggttc tccagcacct ggatagaagt
     9361 ggtcataatc tctgttgccg ttggcgctgt caccgcccga cgtgttgtta tactgcctaa
     9421 cctttctttc agacgcgcat gccacggcaa agattcacca ttctcgctat tttcttcact
     9481 gacattaaag gagagcaaat cttgttgcat caaatgagca tcgtgctgca ggtcgaccgc
     9541 tatcacaata tcagccccca atgcacgcgt gagggaaata ggaattgggt taactactgc
     9601 tccatcaacc agccagtagc cgttatgtgc aacaggtgcc atgagtcctg gaatactgca
     9661 tgatgcgcga atagcaagat ggagatcgcc ttcagtaaac cataattcac gtcccgtact
     9721 taaattggtg gcaacagccg caaagcgacg ggaacaattt tcgatctctg tttccggcat
     9781 tatttcgcgg tattgattga agacacgctc gccgcgcagt aacccaccgc gctgccagga
     9841 gagatccatc aggcgtaaaa catcccaata actgaaagag gtcacccaat cttccagcgc
     9901 agataatcga tcgcatgcat aggcagcgcc caccagcgaa ccaattgaac atcctgcaac
     9961 gatatcaatt tcaataccca ctttttttag cgcattaata acgccaatat gcgaccaacc
    10021 tctcgccgcg ccagatccca gcgccagccc tatttttatc tttctcatta ttcccgcaag
    10081 attcccctgg aatgcaatcg tagccacatc gctactgctc ggttaacata gtgcaactca
    10141 ggcggttaat acgccgttat tgtttccagg gagattattt gtgtctcagc tttgtccctg
    10201 tggtagtgct gtcgagtata gcctatgttg ccacccttat gtgtctggtg aaaaggttgc
    10261 acctgatcca gaacatctca tgcgttcgcg ttactgcgct tttgtgatgc aagacgcaga
    10321 ttatttaata aagacctggc atccctcttg tggagcagcg gcgttacgtg ccgaattgat
    10381 ggccggattt gcgcatactg aatggttggg attgaccgta tttgaacatt gttggcagga
    10441 cgccgacaat atcggatttg tcagttttgt tgctcgattt accgaaggtg gcaaaacagg
    10501 tgcaataatt gaacgttcgc gatttttgaa agaaaacggt caatggtact atattgacgg
    10561 tacacgtccg cagtttggtc gcaacgatcc ctgcccttgt ggttcaggta aaaaatttaa
    10621 aaagtgctgc ggccaataat ggttgacggt acggtttagc aaacactctc aacaaggttt
    10681 ttccagcaat gcattcactc caacgtaaag ttctgcgtac tatttgtccg gaccaaaaag
    10741 gtctgatcgc acgtattacc aatatttgct acaagcacga gttaaatatc gtacagaaca
    10801 atgaatttgt tgatcaccgt accgggcgct tttttatgcg cacggaactg gaagggattt
    10861 ttaatgattc caccctgctg gcggatctcg atagcgcatt gccagaaggc tccgtgcgtg
    10921 agctgaatcc tgccggtcgt cgccggatag tgattctggt cactaaagaa gcgcattgcc
    10981 ttggcgattt gttgatgaaa gccaattacg gcggcctgga tgtcgaaatc gcggcagtta
    11041 ttggtaacca cgatacttta cgttctctgg ttgagcgttt tgatattccg tttgagctgg
    11101 taaaccatga agggttaagc cgcaacgagc acgatcaaaa gatggcagac gccattgatg
    11161 cttataaacc tgactatgtg gtgctggcga agtatatgcg ggtattaacg ccggaatttg
    11221 tggcacgctt cccgaataaa atcatcaata ttcaccattc attcctgcct gcgtttatcg
    11281 gcgcacgtcc ttatcaccag gcctatgaac gtggtgtgaa gattattggc gcaaccgctc
    11341 actatgtgaa tgacaatctg gacgaaggcc caatcatcat gcaggacgtt attcatgtcg
    11401 atcataccta cacagctgaa gatatgatgc gcgcaggtcg tgacgtcgag aaaaacgtct
    11461 taagtcgtgc gctatacaaa gtactggcac agcgcgtctt tgtttacggt aatcggacga
    11521 ttattcttta atcgccagca aaaataactg gttaccttta atccgttacg gatgaaaatt
    11581 acgcaaccag ttcatttttc tcaacgtaac actttacagc ggcgcgtcat ttgatatgat
    11641 gcgccccgct tcccgataag ggagcaggcc agtaaaaagc attacccc
//
LOCUS       DADMHM010000124        11521 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.125, whole genome shotgun sequence.
ACCESSION   DADMHM010000124 DADMHM010000000
VERSION     DADMHM010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11521)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11521)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11521
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.125"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            220..1167
                     /locus_tag="JN125_002837"
     CDS             220..1167
                     /locus_tag="JN125_002837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001361319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HAY8872562.1"
                     /translation="MKNVLVTVPSFSARCVSASKLLRENNFNLIIKNNVEHLLKSEST
                     ALRESICAVIAGKDCYQADTLSLLPGVKIISRFRMGIDNIDLRAAQQSGIVVNNAVGI
                     NSNAVAEFIIGLIFASMRNIPGSYHAMQNGYWGESHGYELQGKRIGMVGYGNIGKTLA
                     KRLSGFDVELLAYDKQPDYQVADKVGVQFVSIEDIFMQSHVIIVLLPFSPELENFISH
                     KYLSMMRNGALIINAARGKLLDEGALLQVIEERNVFAALDVFSSEPLAQFSPLLHAKN
                     IITTPHIAAATVESYQQTGTHVAQSIIDYFAGREIKNVL"
     gene            complement(1246..1322)
                     /locus_tag="JN125_002838"
     tRNA            complement(1246..1322)
                     /locus_tag="JN125_002838"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1286..1288),aa:Met,seq:cat)
     gene            complement(1355..1431)
                     /locus_tag="JN125_002839"
     tRNA            complement(1355..1431)
                     /locus_tag="JN125_002839"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1395..1397),aa:Met,seq:cat)
     gene            complement(1465..1541)
                     /locus_tag="JN125_002840"
     tRNA            complement(1465..1541)
                     /locus_tag="JN125_002840"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1505..1507),aa:Met,seq:cat)
     gene            1750..2847
                     /gene="mltA"
                     /locus_tag="JN125_002841"
     CDS             1750..2847
                     /gene="mltA"
                     /locus_tag="JN125_002841"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008785702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase A"
                     /protein_id="HAY8872563.1"
                     /translation="MKGRWVKYLLMGTVVAMLAACSSKSTDRGQQYKDGKFTQPFSLV
                     NQPDAVGAPINAGDFAEQINHIRNSSPRLYGNQSNVYNAVQEWLRAGGDTRNMRQFGI
                     DAWQMEGADNYGNVQFTGYYTPVIQARHTRQGEFQYPIYRMPPKRGRLPSRAEIYAGA
                     LGDKYILAYSNSLMDNFIMDVQGSGYIDFGDGSPLNFFSYAGKNGHAYRSIGKVLIDR
                     GEVKKEDMSMQAIRHWGETHSEAEVRELLEQNPSFVFFKPQSFAPVKGASAVPLVGRA
                     SVASDRSIIPPGTTLLAEVPLLDNNGKFNGQYELRLMVALDVGGAIKGQHFDIYQGIG
                     PEAGHRAGWYNHYGRVWVLKTAPGAGNVFSG"
     gene            2924..3730
                     /gene="tcdA"
                     /locus_tag="JN125_002842"
     CDS             2924..3730
                     /gene="tcdA"
                     /locus_tag="JN125_002842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HAY8872564.1"
                     /translation="MSVVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSW
                     AAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRV
                     TVVDDFVTPDNVAQYMSAGYSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQID
                     PTQIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSIGKLGVDCVFSTEALVYPQSDGT
                     VCAMKATAEGPKRMDCASGFGAATMVTATFGFVAVSHALKKMMAKAARQG"
     gene            complement(3781..4224)
                     /gene="csdE"
                     /locus_tag="JN125_002843"
     CDS             complement(3781..4224)
                     /gene="csdE"
                     /locus_tag="JN125_002843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase sulfur acceptor subunit
                     CsdE"
                     /protein_id="HAY8872565.1"
                     /translation="MTNPQFAGHPFGTTVTAETLRNTFAPLTQWEDKYRQLIMLGKQL
                     PALPDELKAQAKEIAGCENRVWLGYTVAENGKMHFFGDSEGRIVRGLLAVLLTAVEGK
                     TAAELQAQSPLALFDELGLRGQLSASRSQGLNALSEAIIAAAKQV"
     gene            complement(4224..5429)
                     /gene="csdA"
                     /locus_tag="JN125_002844"
     CDS             complement(4224..5429)
                     /gene="csdA"
                     /locus_tag="JN125_002844"
                     /EC_number="3.13.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase CsdA"
                     /protein_id="HAY8872566.1"
                     /translation="MNVFNPAQFRAQFPALQDAGVYLDSAATALKPEAVVEATRQFYS
                     LSAGNVHRSQFAEAQRLTARYEAAREKVAQLLNAPDDKTIVWTRGTTESINMVAQCYA
                     RPRLQPGDEIIVSVAEHHANLVPWLMVAQQTGAKVVKLPLNAQRLPDVDLLPELITPR
                     SRILALSQMSNVTGGCPDLARAITFAHSAGMVVMVDGAQGAVHFPADVQQLDIDFYAF
                     SGHKLYGPTGIGVLYGKSELLEAMSPWLGGGKMIHEVSFDGFTTQSAPWKLEAGTPNV
                     AGVIGLSAALEWLADYDINQAENWSHSLATLAEDALAKRPGFRSFRCQDSSLLAFDFA
                     GVHHSDMVTLLAEYGIALRAGQHCAQPLLAELGVTGTLRASFAPYNTKSDVDALVNAV
                     DRALELLVD"
     gene            5621..5848
                     /locus_tag="JN125_002845"
     CDS             5621..5848
                     /locus_tag="JN125_002845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417289.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgdI/YgdR family lipoprotein"
                     /protein_id="HAY8872567.1"
                     /translation="MKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQTD
                     NDTGMISYKDANGNKQQINRTDVKEMVELDQ"
     gene            6199..7116
                     /locus_tag="JN125_002846"
     CDS             6199..7116
                     /locus_tag="JN125_002846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005130970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GcvA"
                     /protein_id="HAY8872568.1"
                     /translation="MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSL
                     EDFLGLKLFRRRNRSLLLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSLLP
                     SFAIHWLVPRLSSFNSAYPGIDVRIQAVDRQEDKLADDVDVAIFYGRGNWPGLRVEKL
                     YAEYLLPVCSPLLLTGEKPLKTPEDLAKHTLLHDASRRDWQTYTRQLGLNHINVQQGP
                     IFSHSAMVLQAAIHGQGVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQA
                     ELGKIAAFRQWILAKAAAEQEKFRFRYEQ"
     gene            7135..7530
                     /locus_tag="JN125_002847"
     CDS             7135..7530
                     /locus_tag="JN125_002847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF423 domain-containing protein"
                     /protein_id="HAY8872569.1"
                     /translation="MTSRFMLIFAAISGFIFVALGAFGAHVLSKTMGAVEMGWLQTGL
                     EYQAFHTLAILGLAVAMQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAFVT
                     PVGGVSFLAGWALMLVGAIRLKRKGVSHE"
     gene            7523..8623
                     /gene="rlmM"
                     /locus_tag="JN125_002848"
     CDS             7523..8623
                     /gene="rlmM"
                     /locus_tag="JN125_002848"
                     /EC_number="2.1.1.186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (cytidine(2498)-2'-O)-methyltransferase
                     RlmM"
                     /protein_id="HAY8872570.1"
                     /translation="MNKVVLLCRPGFEKECAAEITDKAGQREIFGFARVKENAGYVIY
                     ECYQPDDGDKLIRELPFSSLIFARQWFVVGELLQHLPPEDRITPIVGMLQGVVEKGGE
                     LRVEVADTNESKELLKFCRKFTVPLRAALRDAGVLANYETPKRPVVHVFFIAPGCCYT
                     GYSYSNNNSPFYMGIPRLKFPAEAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDL
                     GACPGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVC
                     DMVEKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINA
                     QIQARQLYHDREEVTVHVRRIWAAVGGRRDER"
     gene            complement(8667..9394)
                     /gene="fucR"
                     /locus_tag="JN125_002849"
                     /pseudo
     CDS             complement(8667..9394)
                     /gene="fucR"
                     /locus_tag="JN125_002849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417285.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose operon activator"
     gene            complement(9452..9874)
                     /gene="fucU"
                     /locus_tag="JN125_002850"
     CDS             complement(9452..9874)
                     /gene="fucU"
                     /locus_tag="JN125_002850"
                     /EC_number="5.1.3.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose mutarotase"
                     /protein_id="HAY8872571.1"
                     /translation="MLKTISPLISPELLKVLAEMGHGDEIIFSDAHFPAHSMGPQVIR
                     ADGLLVSDLLQAIIPLFELDSYAPPLVMMAAVEGDTLDPEVERRYRNALSLQAPCPDI
                     IRINRFAFYERAQKAFAIVITGERAKYGNILLKKGVTP"
     gene            complement(9876..11294)
                     /gene="fucK"
                     /locus_tag="JN125_002851"
                     /pseudo
     CDS             complement(9876..11294)
                     /gene="fucK"
                     /locus_tag="JN125_002851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417283.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L-fuculokinase"
     gene            complement(11291..11488)
                     /locus_tag="JN125_002852"
                     /pseudo
     CDS             complement(11291..11488)
                     /locus_tag="JN125_002852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000724154.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="l-fucose isomerase"
BASE COUNT         2779 a         2810 c         3010 g         2922 t
ORIGIN      
        1 aggtttagca ccgtcatgct cgtctactgt tgttctggtt gttggtgatg cggtggcgct
       61 tgcactctct gaattgaaaa aatttactcg tgctgatttc ggcttatatc atccaggagg
      121 tgcactcggc attaaagcaa attcataatt tcaaagtata aatacagtaa ccggtcacgc
      181 catcttttgg ggtggcgttc attgaagtga gtgtcagcta tgaaaaatgt tctggtcacc
      241 gtccccagct tttcagcacg ctgtgtttcc gccagcaagt tgctaagaga gaataatttt
      301 aatcttatta ttaagaataa tgtggagcat ctgcttaaat cagaatccac tgcattacga
      361 gaatctattt gcgcggtcat cgccggaaaa gattgttatc aggcggacac gctatcattg
      421 ctgcctggtg tgaaaataat atcgagattc aggatgggga tagataatat tgatcttcgt
      481 gcagcacaac aatccggtat tgtagtcaat aatgcggttg ggattaattc aaatgctgtc
      541 gcggaattta tcattggact tatcttcgcg agcatgagaa atattcccgg cagctatcat
      601 gcgatgcaaa atggctactg gggtgagtcg catggctatg aattacaagg caaacggatt
      661 ggcatggttg gctacggcaa tataggtaaa accctggcaa aaaggttatc cggttttgat
      721 gttgagcttt tagcttatga caaacaaccc gattatcagg ttgctgacaa agttggagtt
      781 cagtttgtat caattgaaga tatctttatg cagtcgcatg tcatcattgt tcttttgcct
      841 ttttctcctg agctggagaa cttcattagt cataaatatt tgtcgatgat gcgcaatggt
      901 gctctaatca tcaatgccgc aaggggaaag ttgctggatg agggcgcttt actacaggtg
      961 attgaagaac gaaatgtgtt tgcggcgctg gatgtgttta gctctgaacc gttggcgcaa
     1021 tttagcccac tgctacatgc caaaaatatc attacaacgc cgcatattgc ggccgccacc
     1081 gttgagtcat accagcaaac cggtacacac gttgcccagt cgataattga ttacttcgca
     1141 ggaagggaga taaaaaacgt gttgtgagtt cagcgaacga agtttttaaa tacaaaaaaa
     1201 ccgcaatttg tggaacacat tgcggtttat cagcattcta agtattggtt gcgggggccg
     1261 gatttgaacc gacgaccttc gggttatgag cccgacgagc taccaggctg ctccaccccg
     1321 cgtcaccgta ctgctttatt tcatcaaatt tgattggttg cgggggccgg atttgaaccg
     1381 acgaccttcg ggttatgagc ccgacgagct accaagctgc tccaccccgc gtcaccgtac
     1441 tgctttactt catcaaattt taattggttg cgggggccgg atttgaaccg acgaccttcg
     1501 ggttatgagc ccgacgagct accaggctgc tccaccccgc gtccgtggat gcgcactata
     1561 ctccgctcgc gttttcatgc aacctttttt ttaccccgat cacggattta gcatgatttt
     1621 gaacaaaaac aaaccactaa agcctatttt ttgtgcaaaa tttgcgtcag ggagaggctg
     1681 ctcatttcat taaacgcggc ggtttgttat cttcgttgcg ccttattttt taacctgaag
     1741 aagagaacaa tgaaaggacg ttgggtaaag taccttctta tgggcacggt tgtggcaatg
     1801 cttgccgcct gctcttccaa atcaaccgat cgcggacagc aatataaaga cgggaaattt
     1861 acccagcctt tctctctggt gaaccagcca gatgccgttg gcgcgccgat taacgccggt
     1921 gattttgccg agcaaattaa ccatatccgt aattcgtcac cgcgtctgta tggcaaccag
     1981 agtaatgttt ataacgcggt gcaagagtgg ctgcgcgcag gtggtgatac ccgcaatatg
     2041 cgccagttcg gcattgatgc ctggcagatg gaaggtgccg acaactatgg taacgtgcag
     2101 tttacaggct attacacgcc ggtaattcag gcgcgccata cccgccaggg cgagttccag
     2161 tatcctattt accgtatgcc gccaaaacgt ggtcgtctgc cgtctcgtgc ggagatctac
     2221 gcgggggcat tgggcgataa atacatcctc gcttacagca actctctgat ggataacttc
     2281 attatggatg tgcagggtag tgggtatatc gactttggtg atggcagtcc gcttaacttt
     2341 ttcagctatg cagggaaaaa cggtcatgcc tatcgcagca ttggtaaggt gctgatcgac
     2401 cgtggcgaag tgaaaaaaga agatatgtcg atgcaggcga ttcgtcattg gggcgaaaca
     2461 cacagtgaag ccgaggttcg cgagctgctg gaacagaacc cgtctttcgt cttctttaaa
     2521 ccgcaatctt ttgcaccggt gaaaggggca agtgcggtgc cgctggttgg ccgtgcttct
     2581 gttgcctccg atcgttcaat tattccgcca ggtactacct tgctggcaga agtgccgctg
     2641 ctggataata acggcaaatt taacggtcag tacgaattgc gtctgatggt ggcgctggat
     2701 gtcggtggcg caatcaaagg ccaacacttc gatatctatc aagggatcgg gccggaagcc
     2761 ggacatcgcg caggttggta caaccactat ggacgtgtct gggtgctgaa aaccgccccg
     2821 ggcgcaggta acgtctttag cggctgatgt gttattctgt ataccgtttt tacggatacg
     2881 acagggtgag ggataacctc acccttttta attctgaggt gctatgtctg tggtaattag
     2941 tgatgcatgg cgtcagcgtt ttggtggcac agcgcgtctg tatggtgaaa aagcgttgca
     3001 actgtttgct gacgcgcata tttgtgtggt tggtatcggt ggtgtcggtt cctgggcggc
     3061 ggaagcgctg gcgcgcacgg ggattggcgc aatcacgctt atcgatatgg atgatgtgtg
     3121 cgtcaccaat accaatcggc aaattcacgc tctgcgcgat aacgtcgggc tggcaaaagc
     3181 ggaagtcatg gcggagcgca ttcgccagat taacccggag tgccgtgtaa cggtggtgga
     3241 tgatttcgtg acgccggata acgtagcgca atatatgagt gccggttatt cgtacgtgat
     3301 tgatgccatt gatagtgtac gacccaaagc ggcgctgatt gcttattgtc ggcgcaataa
     3361 aatcccgctg gtcacgaccg gtggcgcggg tgggcagatt gacccgacgc agattcaggt
     3421 taccgatctg gcgaaaacga ttcaggaccc gctggcggcg aagttgcgcg agcgcctgaa
     3481 aagcgatttt ggcgtagtga aaaacagtat aggtaagctc ggcgtggatt gcgtgttttc
     3541 tactgaagcg ctggtgtacc cgcagtcaga cggtacggtg tgtgcgatga aagccacggc
     3601 agaagggccg aagcggatgg attgtgcatc tggatttggc gcggcaacga tggtgaccgc
     3661 cacctttggg tttgttgcgg tttctcatgc gctgaagaag atgatggcga aagcagcgcg
     3721 tcagggttaa acaatcaggt cggatgcgac gcgaacgtct tatccgacct ggttctgtgc
     3781 ttaaacctgc ttcgccgcag cgataattgc ctcgcttaac gcattcaacc cctggctgcg
     3841 tgaggcgcta agctgcccac gcaatcccag ctcatcaaac aatgccagcg gcgactgtgc
     3901 ctgtaattcg gcggcggttt tcccctcaac ggcagtcaac aacaccgcca acaggccgcg
     3961 cacaatgcgc ccttcgctgt cgccaaagaa gtgcatttta ccgttttcag ccacggtata
     4021 tcccagccag acgcggtttt cgcatccggc aatctcttta gcctgcgctt ttaactcgtc
     4081 tggcaaagcc ggaagctgtt tccccagcat gatcaactgg cgatatttat cttcccattg
     4141 cgtcaacggt gcgaaggtat tgcgtaacgt ttctgcggtt acggttgtgc cgaacggatg
     4201 tccggcgaat tgcgggtttg tcattaatcc accaataatt ccagcgcgcg gtcaacggca
     4261 ttcaccagcg catccacatc actctttgta ttatatggcg caaaagaggc gcgcagtgtg
     4321 ccggttacgc ctaattctgc cagtagcggc tgagcgcaat gttgcccggc ccgcaaggca
     4381 ataccgtact ccgccagtag cgtcaccata tcgctgtgat gaacgccagc aaaatcaaag
     4441 gccagcaggc tggaatcctg gcagcggaat gaacgaaagc ctggacgttt cgccagcgca
     4501 tcttccgcca gcgttgctaa gctatggctc cagttttcgg cctggttgat atcgtaatct
     4561 gccagccatt ccagcgccgc gcttaatcct atgacaccag ccacatttgg cgttcctgct
     4621 tccagtttcc acggcgcaga ttgagtcgtg aagccgtcaa aactcacttc gtgaatcatt
     4681 ttgccgccac ccagccaggg cgacatcgct tccagcagtt ctgatttgcc atacagcacg
     4741 ccgatacccg tcgggccata cagtttgtga ccagagaaag catagaaatc gatatccagt
     4801 tgctgaacat ccgcggggaa atgcaccgcc ccctgagcac catcaaccat caccaccatc
     4861 cctgctgaat gagcaaaggt aatcgctcgc gccagatccg ggcaaccgcc agtaacgttc
     4921 gacatctgac tcaacgccag aatccgacta cggggagtaa tcagttctgg caacaaatcg
     4981 acatccggca gtcgctgcgc attaagcggc aatttcacca ctttggctcc agtttgttgg
     5041 gcgaccatca gccaggggac gaggttggcg tggtgttctg ccacgctgac aataatctca
     5101 tcgcccggtt gcagacgcgg acgcgcatag cattgtgcca ccatgttgat ggattcagtg
     5161 gtgccgcgcg tccagacgat agttttatca tccggtgcat tcagtaattg cgccactttc
     5221 tctcgtgcag cttcataacg cgcggtcagg cgttgggctt cggcaaactg gctgcgatgg
     5281 acgtttccgg cgctcaggct gtaaaactgt cgagtggctt caaccacggc ttcaggttta
     5341 agcgcggtcg cggcgctgtc gagatagacg cccgcatcct gtagtgcggg aaactgggcg
     5401 cgaaactgcg cgggattaaa aacgttcatg gtactcctcg gcttgatgca ccgatcgtga
     5461 cgcaaaattc actttgatac aaggagagtg ctaaccatca gaattatctg gatatcctgg
     5521 cgaagccgcg taagtaacat atgctgaata gtgttaggcg ttaattttag cctgttaatc
     5581 aatactatta agatttatta atcgctttaa ggagaagatg atgaaaaaga ctgccgcaat
     5641 tatttctgcc tgtatgctga cttttgccct gagcgcctgt tccggttcga actatgtgat
     5701 gcacaccaat gacggacgta ccatcgtctc tgacggcaaa ccacagactg ataacgatac
     5761 cggtatgatt tcgtataaag acgctaatgg caacaaacag cagatcaacc gtactgacgt
     5821 gaaagagatg gtcgaactgg atcagtaatt cgcgatcgca aggtaaaaaa aagcaccgca
     5881 attaggcggt gctacattaa tcactatgga cagacagggt aaatgtacag gaagtgaaaa
     5941 aaggtagctt tgctaccatg gtctgaatcg cagaccaatt gcaaacacaa caacacaaca
     6001 tcacaaccgt aagccaaaag ttcaccagaa cacgcattcc gataaaactt ttcgttccgg
     6061 ctcaggaagt gccgccacta taggtatttg ctggtagaag ctcaacggac aatttataat
     6121 ggctcagatt aaaaaaacta ataggttaca tagtgtgatc taattgttaa attcatttaa
     6181 catcaaagtt taatagccat gtctaaacga ttaccaccgc taaatgcctt acgagttttt
     6241 gatgccgcag cacgccattt aagtttcact cgcgcagcag aagagctttt tgtgacccag
     6301 gccgcagtaa gtcatcaaat caagtctctt gaggattttt tggggctaaa actgttccgc
     6361 cgccgtaatc gttcactcct gctgaccgag gaagggcaaa gctatttcct cgatatcaaa
     6421 gagatatttt cgcaattaac cgaagcgacg cgtaaactcc aggcccgtag cgccaagggg
     6481 gcgttgacgg tcagtttact ccccagtttc gccattcatt ggttggttcc gcgactttcc
     6541 agctttaatt cagcttatcc gggaattgac gttcgaatcc aggcggttga tcgtcaggaa
     6601 gataagctgg cggatgatgt tgatgtggcg atattttatg gtcggggcaa ctggccgggg
     6661 ctacgggtgg aaaaactgta cgccgaatat ttattgccgg tgtgttcgcc gctactgctg
     6721 actggcgaaa aacccttgaa gacaccggaa gatctggcta aacatacgtt attacatgat
     6781 gcttcgcgcc gtgactggca gacatatacc cgacagttgg ggttaaatca tatcaacgtt
     6841 cagcaagggc caatttttag ccatagcgcc atggtgctgc aagcggctat ccacgggcag
     6901 ggagtggcgc tggcaaataa cgtgatggcg caatctgaaa tcgaggccgg acgtcttgtt
     6961 tgcccgttta atgatgttct ggtcagtaaa aacgcttttt atctggtttg tcatgacagc
     7021 caggcagaac tgggtaaaat agccgccttt cgccaatgga tcctggcgaa agccgctgct
     7081 gaacaagaaa aattccgctt tcgttatgaa caataattta cgtagggtac gaccatgacc
     7141 agccgtttta tgctgatttt cgccgccatt agcggcttca tttttgtggc tctgggcgct
     7201 tttggcgcgc atgtgttaag taaaaccatg ggggccgttg agatgggctg gctccagacc
     7261 ggcctcgaat accaggcgtt tcatacgctg gcgatcttag gtctggcggt ggcaatgcag
     7321 cgtcgcatca gtatctggtt ttactggagt agcgttttcc tcgcgttagg cacggtgttg
     7381 ttcagcggca gcctttattg cctggcgctg tcccatctgc gtttgtgggc gtttgtcact
     7441 ccggttggcg gcgtgagctt cctcgcgggc tgggcgttaa tgttagttgg tgctatccgt
     7501 ttaaagcgca agggcgtaag tcatgaataa ggttgtattg ctgtgccgtc cgggctttga
     7561 aaaagagtgc gccgcagaaa ttaccgataa agccggccag cgggaaattt tcggttttgc
     7621 ccgcgtgaaa gagaatgcgg gttatgtcat ttatgaatgt tatcaacctg atgatggcga
     7681 taagttaatc cgtgagctgc cgttcagttc attaattttt gcccgccagt ggtttgtggt
     7741 gggggaactc ctgcagcatt tgccgccaga agatcgtatt acccccattg tcggcatgtt
     7801 acagggcgta gtagagaagg gcggagaact gcgtgttgaa gttgccgata ccaacgaaag
     7861 caaagagttg ctgaaattct gccgtaaatt tactgttccg ctacgcgctg ccttgcgcga
     7921 tgccggggtg ctggcgaact atgaaacgcc gaagcgtccg gttgtgcatg tattctttat
     7981 tgcaccaggc tgctgctata ccggttactc atacagcaac aataattcgc cgttctatat
     8041 gggcattccg cgcctgaaat ttccggcaga ggcgccgagt cgttccacgc tcaaactgga
     8101 agaggcattt catgtgttta ttcctgcgga tgagtgggat gaacgcctgg cgaacgggat
     8161 gtgggcggtg gatttaggcg cttgccctgg cggctggacc taccaactgg tgaagcgcaa
     8221 catgtgggtt tattccgtcg acaacggccc gatggcgcaa agtctgatgg ataccgggca
     8281 ggtgacgtgg ctgcgggaag acggtttcaa attccgtccg acacgcagca atatctcctg
     8341 gatggtatgc gatatggttg aaaaaccggc taaagttgcg gcattgatgg cgcagtggct
     8401 ggttaatggc tggtgccgtg aaaccatttt caatctcaaa ctgccgatga aaaaacgcta
     8461 cgaagaagta tcacacaatc tggcgtatat tcaggcacag cttgatgaac atggcataaa
     8521 tgctcagatt caggcgcggc agttgtatca cgatcgcgaa gaagtgacgg tgcacgtccg
     8581 ccgcatctgg gctgcggtgg gtggtcgtcg cgacgagcga taacaggcaa ggccggggcg
     8641 tcgtcttcgg cctgctaccc tttccgtcag gctgttacca aagaagttgc aacctggcgc
     8701 tcatcagaaa taatgtgcgt tacctcatcc agatgcccga tgcgggcttc ccctgaacga
     8761 ttaaatttac ttttatcaat caataacaac gattgcgcgg cacgttttaa tagcatcgat
     8821 ttgtaatcag cgttgatcgc attggagtcc cacagtgcgc cgctgctatc gatcccttca
     8881 caagaaaaaa taaacagatc gatttccagc gatttaagtt gggaaatcag cgagggattg
     8941 acgtaacagc catatttgcg ctcaagtgtg ccgccggaac tgatcagttg aatgcgttcg
     9001 cgtttaccga gttcatggca aatcggatgg ctattggtga agacctgaat gttgatgtca
     9061 ggcaactggc gtgccagata ccagcaagtt gaactggcgt ctaaggctat caccatccct
     9121 tcttcaatcc acgcgagcgc ctcgcgcgcg atatctgctt tatgcgcata atggcttttc
     9181 agcctgatgt gaaagggatc gccactgtct tgattttgac ggtggatata tttagcgcgt
     9241 ccatgattgc gcagaatttt accctgcgtc tgtaattcat tgagatcgga atggtttctt
     9301 tactgacctt tagctgttca gagagagctt ccgtggtcag gctggtatgg ttcagcagca
     9361 ggtcgactat cgcttgctgg cgtgccgctt tcatattttt caccccatca ttcgataacc
     9421 gcccgcgtca tgcgggcgta ccggtatgag attacggtgt tacccctttt tttaaaagaa
     9481 tattcccgta cttcgctcgt tcgcctgtga taacgatcgc aaaggctttt tgcgcccgtt
     9541 cataaaacgc aaaacgattg atgcggatga tgtcaggaca cggggcttgt agtgaaagcg
     9601 cattacggta acgtcgttct acttcaggat cgagagtgtc accttctacc gccgccatca
     9661 tcaccagcgg cggtgcataa ctgtccagtt caaataacgg gataatcgcc tggagcaagt
     9721 cgctcaccaa caggccatca gcgcggatca cctgcggtcc catcgaatgg gcgggaaagt
     9781 gagcatcgga aaaaataatt tcatctccat gtcccatctc tgccagcact ttcaatagtt
     9841 cgggagaaat taacggcgaa attgttttca gcatttcaca cttcctctat aaattcaggt
     9901 tcagtttgcg ggtagaaata acggtactga taatgaatct atgcgcgggc ttcttcaggg
     9961 ctgttaaatt cccctacgcc ataccaaccg aacagcgcag ctcctgcgac ggtcgtttcg
    10021 gcgtcgtcga gaacttttac cggaatatca agcatattgg ctttaatctg attccacaat
    10081 gtgttgcgac ttcctccacc gactaacaat aattcagagg ccttaaagtg cccgattttt
    10141 tccagcatct gtagattgcg ctgtaattgc gcagttaacc cttccagcgc cgcgcgatag
    10201 aaatgccccc gcgtggtatt aagcgtcact ccttgccagc cagcgttctg acacgacaat
    10261 aaatcacact gcatttttac gccatccgcg ctaggcgcga tcagacgagc ttcttcaatc
    10321 aacatttgcc agggtgtttc agccgtccag aacagttttc tcacccattc cagcacgccg
    10381 gatgccagcc attgcatacc taggttatac aaccctgcct ggctatccag ttcgcaggtg
    10441 gaaccggcgt actgacttaa cagcgaagta tcaacctagg cgctacggac cattaaaatt
    10501 tcccatgtac cggaagagag cacgggttca ttttggtcgg caccagcgcc aaaaagggcg
    10561 aactgggtat cgtgacctgc ggaaatcacc ggtatgccaa cgggtaagcc gagcattgct
    10621 gcggcgctgt tctgtagcgt accaatctgt tcacccgctt ccaccagacg agggaagagt
    10681 cggcgtggaa taccagtggc ttgtaaaatt tgcggactga aatcgcgttg ctggatatcc
    10741 agcatctggc tggttccggc catcgtgata tcagtagtga attcgccggt taaacggtgg
    10801 ttaatcagcg acgaaataaa gaaccaggcg tgcgcgcgtt ccagcagttg tggatgattt
    10861 tctttcaacc acaccaactt atataacgta ttgaaactaa aggctccgac gccagaaata
    10921 gcctgcaacc gctgtgcgga gatcaactgt tcaatattgt ccataaccgc tgctgttcgc
    10981 ggacatttcc agctaatgat cggatagagc agattacctt gcttatctac cagagcgcca
    11041 tccacaccaa aggtggtgac ggcgataccg cggatgtggc attcagtcag ttcactattg
    11101 atttgccgac agcaatcagc aaagcgttgc aaaatggcgt ctaaagacca ctggtgccag
    11161 gtgttgtttt ccatcgcgat atcgctggca ttaggcgttg aggcgcgggc aacaattttt
    11221 ccctgccgat taaccgcgat ggccctgaca ttggtcgcgc cacagtcgag taccaggata
    11281 acttcttgtt tcataatcgc tcctgcaata cttcaatatc catgccgtgc gcagcccagg
    11341 cagaaggacg atacactttg gtctcttcaa cgttgtgcat acataccggg atacgcagca
    11401 tggaggcgag agtgataaag tcagcgccaa cgtggccgat ggtcagaacc ccatggttag
    11461 cgccccagtt cgccattacc gagtacacgg taatgactcc aacttactga tagtgtttta
    11521 t
//
LOCUS       DADMHM010000125        11480 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.126, whole genome shotgun sequence.
ACCESSION   DADMHM010000125 DADMHM010000000
VERSION     DADMHM010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11480)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11480)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11480
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.126"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..193)
                     /locus_tag="JN125_002853"
     CDS             complement(<1..193)
                     /locus_tag="JN125_002853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4754 domain-containing protein"
                     /protein_id="HAY8872572.1"
                     /translation="MGKEYKTLINKALERFYFRLSASGAHAERAARDSLTRAIRSLYD
                     VAFYADDLDALNELSELICA"
     gene            complement(205..492)
                     /locus_tag="JN125_002854"
     CDS             complement(205..492)
                     /locus_tag="JN125_002854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872573.1"
                     /translation="MTKDHAQGVFIRFIDFRGELLLRASAIDGVTPAGKNGADEATYV
                     YLNGTRLLVELPYQTVREIISEAEKARQVNGDEPYIEIICMDSEAEIQKAD"
     gene            complement(503..841)
                     /locus_tag="JN125_002855"
                     /pseudo
     CDS             complement(503..841)
                     /locus_tag="JN125_002855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001705126.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4761 family protein"
     gene            complement(856..1134)
                     /locus_tag="JN125_002856"
     CDS             complement(856..1134)
                     /locus_tag="JN125_002856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001151410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HAY8872574.1"
                     /translation="MAKVLNTHEQADFERLAAFYPYRDEHGLPVLEESLKDYAKRTNQ
                     AVNTVKRQADRGSIPINQDEKNSRRTVNLFALFLKTIRSAEKYVQMTK"
     gene            1231..1539
                     /locus_tag="JN125_002857"
     CDS             1231..1539
                     /locus_tag="JN125_002857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000904671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAY8872575.1"
                     /translation="MLIGEKIRVIRESEDLTREEFCGLIDVPIGTLRRYETGRIENIG
                     GEVLIKIVNHPRFFKYMNWLMTGKTNEAAGQISPSLSPDGPENTSSSQKSRKTGTQPG
                     "
     gene            1628..2566
                     /locus_tag="JN125_002858"
     CDS             1628..2566
                     /locus_tag="JN125_002858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001247211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HAY8872576.1"
                     /translation="MCPEGRKGKRIRKKFKTKSDAVLYERWVLAQQHNNEWKGNSIDR
                     RPLSVLIDLWWKYHGQLMKSGHNTRLKLLRLSEAMDDPCVHKLNTTMLTELRVSRIEQ
                     GIQPSTINREIGALSAMFTALISSGHFLNDNPVQGLKGMKVKEREMGYLSKSECVQLL
                     DALAENPDERLAVEILLSTGARWGEVAALEQRRVLHCRITFSKTKNSKNRTVPISESL
                     FEKIKKRGGKLVFPTLDYSLVRDVIKTVAPDVPDGQAVHALHHTFASHFMMNGGNILT
                     LQKILGHAKIQTTMIYAHLAPDYLQDAVRFNPLGGA"
     gene            2569..2931
                     /locus_tag="JN125_002859"
     CDS             2569..2931
                     /locus_tag="JN125_002859"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872577.1"
                     /translation="MKFHLDELKRMATLDNFARFLNESSTNEKCLSCGDTDMYMYLTN
                     IVEVGPEPKTAEECDLGTFVMLDYIGPFTGYPGYEGHDRENIHNYEFRLTCNRCGFVH
                     RYSARAFMNWVGKQGDEK"
     gene            3039..3368
                     /locus_tag="JN125_002860"
     CDS             3039..3368
                     /locus_tag="JN125_002860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000997174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872578.1"
                     /translation="MNDDLERRVSCLESDVTEIKNNLITLTTRSESFATKSDVLEIRE
                     GLRLEMAESRQSLKSEMADLRQSLKVEMAEHRTELQKSFANQTWLLTGIVLSAMAVLV
                     AVVTVIK"
     gene            3577..4557
                     /gene="btuC"
                     /locus_tag="JN125_002861"
     CDS             3577..4557
                     /gene="btuC"
                     /locus_tag="JN125_002861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 ABC transporter permease BtuC"
                     /protein_id="HAY8872579.1"
                     /translation="MLTLARQQQRQNIRWLLCLSVLMLLALLLSLCAGEQWISLGDWF
                     TPRGELFVWQIRLPRTLAVLLVGAALAISGAVMQALFENPLAEPGLLGVSNGAGVGLI
                     AAVLLGQGQLPNWALGLCAIAGALIITLILLRFARRHLSTSRLLLAGVALGIICSALM
                     TWAIYFSTSVDLRQLMYWMMGGFGGVDWRQSWLMLALIPVLLWICCQSRPMNMLALGE
                     ISARQLGLPLWFWRNVLVAATGWMVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLL
                     PGCALAGASALLLADIVARLALAAAELPIGVVTATLGAPVFIWLLLKARR"
     gene            4620..5171
                     /gene="btuE"
                     /locus_tag="JN125_002862"
     CDS             4620..5171
                     /gene="btuE"
                     /locus_tag="JN125_002862"
                     /EC_number="1.11.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional thioredoxin/glutathione peroxidase"
                     /protein_id="HAY8872580.1"
                     /translation="MQDSILTTVVKDIDGEVTTLEKYAGNVLLIVNVASKCGLTPQYE
                     QLENIQKAWADRGFVVLGFPCNQFLEQEPGSDEEIKTYCTTTWGGTFPMFSKIEVNGE
                     GRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGLVIQ
                     RFSPDMTPEDPIVMESIKLALAK"
     gene            5171..5920
                     /gene="btuD"
                     /locus_tag="JN125_002863"
     CDS             5171..5920
                     /gene="btuD"
                     /locus_tag="JN125_002863"
                     /EC_number="7.6.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 ABC transporter ATP-binding protein
                     BtuD"
                     /protein_id="HAY8872581.1"
                     /translation="MSIVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLA
                     RMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFAMPVWHYLTLHQHDKT
                     RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEP
                     MNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRRE
                     EVLTPPNLAQAYGMNFRRLDIEGHRMLILTI"
     gene            5998..6462
                     /locus_tag="JN125_002864"
     CDS             5998..6462
                     /locus_tag="JN125_002864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase"
                     /protein_id="HAY8872582.1"
                     /translation="MRFCLILITALFLAGCSHHKAPPPNARLSDSITVIAGLNDQLQS
                     WHGTPYRYGGMTRRGVDCSGFVVVTMRDRFDLQLPRETKQQASIGTQIDKDKLLPGDL
                     VFFKTGSGQNGLHVGIYDTNNQFIHASTSKGVMRSSLDNVYWQKNFWQARRI"
     gene            6709..7422
                     /gene="ydiV"
                     /locus_tag="JN125_002865"
     CDS             6709..7422
                     /gene="ydiV"
                     /locus_tag="JN125_002865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-FlhDC factor"
                     /protein_id="HAY8872583.1"
                     /translation="MKIFLENLYHSDCYFLPIRDNQQVLVGVELITHFSSEDGTVRIP
                     TSRVIAQLTEEQHWQLFSEQLELLKSCQHFFIQHKLFAWLNLTPQVATLLLERDNYAG
                     ELLKYPFIELLINEYYPHLNEGKDNRGLLSLSQVYPLVLGNLGAGNSTMKAVFDGLFT
                     RVMLDKSFIQQQITHRSFEPFIRAIQAQISPCCNCIIAGGIDTAEILAQITPFDFHAL
                     QGCLWPAVPINQITTLVQR"
     gene            7485..8921
                     /locus_tag="JN125_002866"
     CDS             7485..8921
                     /locus_tag="JN125_002866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdiU family protein"
                     /protein_id="HAY8872584.1"
                     /translation="MTLSFVTRWRDELPETYTALSPTPLNNARLVWHNTELANTLSIP
                     SSLFKNGAGVWGGEALLPGMSPLAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGTTM
                     DWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRE
                     TAEPGAMLMRVAPSHLRFGHFEHFYYRRESEKVRQLADFAIRHYWSHLEDDEDKYRLW
                     FSDVVARTASLIAQWQTVGFAHGVMNTDNMSLLGLTLDYGPFGFLDDYEPGFICNHSD
                     HQGRYSFDNQPAVALWNLQRLAQTLSPFVAVDALNEALDSYQQVLLTHYGQRMRQKLG
                     FMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTEQHSAASPLRDEFIDRAAFDDW
                     FARYRGRLQQDEVSDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMMELHRLHEAL
                     RNPFSDRDDDYVSRPPDWGKRLEVSCSS"
     gene            complement(8925..9116)
                     /gene="hemP"
                     /locus_tag="JN125_002867"
     CDS             complement(8925..9116)
                     /gene="hemP"
                     /locus_tag="JN125_002867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemin uptake protein HemP"
                     /protein_id="HAY8872585.1"
                     /translation="MRYADSRKLTPETDANHKTASPQPIRRITSQTLLGPDGKLIIDH
                     DGQEYLLRKTQAGKLLLTK"
     gene            complement(9248..10294)
                     /gene="aroH"
                     /locus_tag="JN125_002868"
     CDS             complement(9248..10294)
                     /gene="aroH"
                     /locus_tag="JN125_002868"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroH"
                     /protein_id="HAY8872586.1"
                     /translation="MNRTDELRTARIESLVTPAELALRYPVTPGVATHVTDSRRRIEK
                     ILNGEDKRLLVIIGPCSIHDLTAAMEYATRLQSLRNQYQSRLEIVMRTYFEKPRTVVG
                     WKGLISDPDLNGSYRVNHGLELARKLLLQVNELGVPTATEFLDMVTGQFIADLISWGA
                     IGARTTESQIHREMASALSCPVGFKNGTDGNTRIAVDAIRAARASHMFLSPDKNGQMT
                     IYQTSGNPYGHIIMRGGKKPNYHADDIAAACDTLHEFDLPEHLVVDFSHGNCQKQHRR
                     QLEVCEDICQQIRNGSTAIAGIMAESFLREGAQKIVGGQPLTYGQSITDPCLDWEDTE
                     RLVEKLASAVDTRF"
     gene            complement(10451..11284)
                     /gene="ppsR"
                     /locus_tag="JN125_002869"
     CDS             complement(10451..11284)
                     /gene="ppsR"
                     /locus_tag="JN125_002869"
                     /EC_number="2.7.11.33"
                     /EC_number="2.7.4.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="posphoenolpyruvate synthetase regulatory
                     kinase/phosphorylase PpsR"
                     /protein_id="HAY8872587.1"
                     /translation="MDNAVDRHVFYISDGTAITAEVLGHAVMSQFPVTISSITLPFVE
                     NESRARAVKDQIDAIYHQTGVRPLVFYSIVLPEIRAIILQSEGFCQDIVQALVAPLQQ
                     EMKLDPTPIAHRTHGLNPNNLNKYDARIAAIDYTLAHDDGISLRNLDQAQVILLGVSR
                     CGKTPTSLYLAMQFGIRTANYPFIADDMDNLVLPASLKPLQHKLFGLTIDPERLAAIR
                     EERRENSRYASLRQCRMEVAEVEALYRKNQIPWINSTNYSVEEIATKILDIMGLSRRM
                     Y"
BASE COUNT         2820 a         2597 c         3007 g         3056 t
ORIGIN      
        1 cggcacagat cagctcggaa agttcgttaa gtgcatccag atcatcagcg taaaaagcca
       61 cgtcatacag acttcggatt gctctggtca atgagtcacg ggccgcacgt tcagcatgag
      121 cgcctgatgc acttaagcga aaataaaaac gctcaagtgc tttgttaatg agagttttat
      181 attctttgcc catcacaacg ccctttaatc tgctttctgt atttcagctt ctgaatccat
      241 acaaataatt tcgatatagg gttcatcgcc attaacctgg cgtgcctttt cagcttcgct
      301 aatgatttct cgtacggtct ggtacggaag ttccacaagc agtcgcgtgc cgttcagata
      361 aacgtaagtg gcttcgtcgg ctccgttttt acccgccgga gtcactccgt caatagcgga
      421 tgcacgtaat aacagttcac cgcgaaaatc aataaaacgg ataaatacac cttgtgcatg
      481 gtctttggtc ataaagcacc tgttataaat cagtctgttt aataaaactt tgcccgcgaa
      541 gcagacgatc aatcgtgcga agtgcttcgt ataatgtgaa atcctgcccg cactgattgt
      601 cgccacagct caatgcaaaa atgcggtttc cggtaaacgg attgcgtggg catttgtgga
      661 tcacgattcc agctttctca atcagctagg tgtgctcgcc gatttgtttt actgggtagc
      721 catcctgcgt tgcgtgtgta tcactcaggc tgtagcggat gttgctgcgt gatgcactgg
      781 tagtgaaacg gttagcgtgg cgttctgttc cggtacgaaa attacggcgt tgcttcagca
      841 taaaatgaca cctcgttatt ttgtcatctg cacgtatttt tctgcgctcc tgattgtttt
      901 caggaaaaga gcgaagagat ttactgtgcg tcttgagttc ttttcatctt ggttgatggg
      961 aattgaacct ctgtcagcct gtcttttcac tgtgttaaca gcttggttgg tacgctttgc
     1021 gtaatctttc aggctttctt caagtactgg taacccatgc tcatcgcggt agggatagaa
     1081 cgctgctaaa cgctcaaagt ctgcctgttc gtgtgtgttc aggacttttg ccatgtgtga
     1141 taacctgcgc tatctgtggt tgtttgtgac ttggtgtgct tataagtaca ccttgtgcgc
     1201 aagcttagtg tacttatagg gacactgtca atgcttatcg gtgaaaaaat tagagtgatt
     1261 cgtgaatcag aggatttaac gcgcgaagaa ttttgcggcc tgattgatgt gcctatcggc
     1321 actttgcgtc gttatgaaac ggggcggatt gaaaacatag ggggcgaagt gcttatcaag
     1381 attgttaatc accctcgctt ttttaagtac atgaattggc ttatgacggg aaaaacaaat
     1441 gaggctgctg ggcagatcag tccctctctc tcccctgatg ggccagaaaa cacatcgtct
     1501 tctcaaaaat cccgcaagac tggtacacag cccggctaat catagaacgc tgggggcatg
     1561 gtggtcttgt aacgctgggg tttcacgaat gagcataaaa tcaattctgg gagggtatct
     1621 tcttgacatg tgccctgagg ggcgtaaagg caaacgcatt cgcaaaaaat ttaaaacgaa
     1681 atcggatgca gttttatatg agcggtgggt gctggcgcaa cagcataaca atgagtggaa
     1741 aggaaactct attgatcgcc gtcctctgtc agtgcttatt gacttgtggt ggaaatacca
     1801 cggccagcta atgaagtcag ggcataacac gcgccttaaa ttgctgcgct tgagtgaagc
     1861 aatggatgac ccgtgcgtgc ataaacttaa tacaacgatg ctcaccgagc tacgtgtgtc
     1921 caggatagag caggggatac agcccagcac cataaatcga gagattgggg cgttaagcgc
     1981 gatgtttacc gcactcatct catccggcca ttttcttaac gataaccccg ttcaaggcct
     2041 taaaggaatg aaggttaagg agcgcgaaat gggatatctg agtaagtctg aatgtgttca
     2101 gttgctggat gcactggctg aaaatcccga tgaacgactg gctgtcgaaa tccttctgtc
     2161 gaccggggcg cgatggggcg aggtagcggc actggagcag cgccgtgttc ttcattgtcg
     2221 aatcactttt tcaaaaacga agaacagcaa aaaccgtacc gttcctattt ctgaaagcct
     2281 gtttgaaaag atcaaaaaac ggggcgggaa actggtgttt ccgacgctgg attattcatt
     2341 ggttcgcgat gtcatcaaaa cggtcgcacc tgatgttcct gacggccagg ctgttcatgc
     2401 gctgcaccac accttcgcca gtcatttcat gatgaacggc ggcaatattc tgacgctcca
     2461 gaaaattctg gggcacgcaa agattcagac aacgatgatt tatgcccatc ttgcgccgga
     2521 ttacctgcag gatgcggtga ggtttaatcc actaggaggt gcttaagagt gaagtttcat
     2581 ttagatgaac ttaaaagaat ggcaacgctc gataattttg cgcgttttct caatgagtcg
     2641 tctacgaatg aaaaatgttt gtcgtgtggc gatacggata tgtacatgta tttgacgaat
     2701 attgttgagg tggggcctga gccgaaaact gctgaggagt gtgatttagg cacttttgtt
     2761 atgcttgatt acatcggtcc atttactggg tatccgggat atgagggaca tgatcgggaa
     2821 aatatccata actatgaatt ccgacttacc tgtaacagat gtgggtttgt tcatcgttac
     2881 tcggcccggg cctttatgaa ctgggtaggc aagcagggtg atgagaagtg atggcagaga
     2941 atgttgcaca tatttcgcgg ttcagaaaaa agaaagagaa tgcctataat gtatccaaca
     3001 accaagtaac aggaagtggt aatgatggag gtgatggcat gaatgacgac cttgaacggc
     3061 gggtcagttg cctggaaagt gatgtgactg aaatcaaaaa caacctgatt actctcacta
     3121 caagaagcga atcctttgct accaaatctg atgtactgga gattcgcgaa gggttgaggc
     3181 ttgagatggc agaatcgcgc caatccctga agtctgagat ggctgattta cgccagtctc
     3241 tgaaagttga gatggctgag catcgtactg aacttcagaa atcatttgca aatcagactt
     3301 ggttactcac aggtattgtc ctgtctgcga tggccgtgct tgtggctgtg gttactgtta
     3361 ttaagtaaat ttatggcggc gatatgatcc acaaagtgac cacatccctg ttatttgttg
     3421 tggttggctg tgtttttgtg tgtctgtaag tctttgataa ttatctaact tgttgatttt
     3481 tacttgtgtt tatggccgct ctgcggcctt ttttcttttc actgtcgaag agtcaccgta
     3541 aaatcaacgc catgacactt cagcagaacg gataccatgc tgacacttgc ccgccaacaa
     3601 cagcgacaaa atattcgctg gttattatgc ctgtcagttt tgatgctgct ggcgcttctc
     3661 ttaagccttt gcgccggtga acaatggatc tcgctaggtg actggtttac tcctcgtggc
     3721 gaactgttcg tctggcaaat tcgcctgcca cgtacgctgg ctgtattgct ggttggtgcg
     3781 gcgctggcta tatccggcgc tgtaatgcag gcgttgtttg aaaatcctct ggcagaacct
     3841 ggactacttg gggtctctaa cggcgcaggc gtggggctta tcgccgcggt attgcttggg
     3901 caagggcaac tccccaactg ggcgctaggg ctgtgtgcga ttgctggcgc gcttatcatc
     3961 actttaatac tcttacgttt cgcccgtcgt catctttcga ccagtcggtt attgctggct
     4021 ggcgttgcat tagggattat ctgtagcgca ctaatgacgt gggctatcta cttttccacc
     4081 tctgttgatt tacgtcagct gatgtactgg atgatgggcg gttttggcgg cgtagactgg
     4141 cggcaaagct ggctgatgct ggcattgatc cccgtgttgt tgtggatctg ttgtcagtcc
     4201 aggccgatga atatgttagc acttggcgag atctcggcgc ggcaactggg tttacccctg
     4261 tggttctggc gcaatgtgct ggtggccgcg accggctgga tggttggcgt cagtgtggcg
     4321 ctggcgggtg ctatcggctt tattggtctg gtgatcccac atattcttcg gttgtgtggt
     4381 ttaaccgatc atcgcgtatt acttcccggc tgcgcgctgg caggggcgag cgcattgctg
     4441 ctggccgata ttgtagcgcg cctggcatta gctgccgcag agctgcctat tggcgtggtc
     4501 accgcaacgt tgggtgcgcc ggtgtttatc tggttattgt taaaagcaag acgttagccg
     4561 caaaaagacg gtctatgatt aaaagctaag atttttactg accacaccca ggagaaacga
     4621 tgcaagattc cattctgacg accgtagtga aagatatcga cggtgaagtg accacgctgg
     4681 agaagtacgc cggtaatgtg ctgttgattg tcaatgtcgc ctcaaagtgt ggcttaacgc
     4741 cgcaatatga gcagttggag aatattcaga aagcctgggc cgatcgaggt tttgtggtgc
     4801 tgggattccc gtgcaaccag tttctggaac aagaaccggg cagcgatgaa gagattaaaa
     4861 cttactgtac caccacatgg ggggggacgt tcccgatgtt cagtaagatt gaagttaacg
     4921 gcgaaggacg ccatccgctg tatcaaaaat tgattgccgc agcgccgacc gcagtcgcgc
     4981 cggaagagag cggattctat gcccgtatgg tcagcaaagg tcgtgcaccg ctgtaccctg
     5041 atgatatttt atggaatttt gagaaatttt tagttggcag ggacggattg gtcatccagc
     5101 gtttttcccc ggatatgacg ccggaagacc ccattgtgat ggaaagcatt aaactggcgt
     5161 tggcaaaata atgtctattg tgatgcagtt acaggatgtt gcggaatcta cccgcctggg
     5221 gccactttct ggcgaggttc gggctgggga gatcctgcac ctggtggggc cgaatggcgc
     5281 gggtaagagt accttgcttg cacgaatggc cggaatgacc agcggtaagg gaagcattca
     5341 gttcgcgggg caacccctgg aagcatggtc cgcaacaaaa ctcgcgctgc atcgcgccta
     5401 tctttcacaa cagcagacgc cgccgtttgc aatgccggtc tggcactacc tgacactgca
     5461 tcagcacgat aaaacgcgta ccgaactact gaatgatgtc gcaggggcgc tggctcttga
     5521 tgacaaactc ggtcgtagca ccaatcaact ttccggcggt gaatggcaac gcgtacgtct
     5581 tgctgcggtg gtgttgcaaa tcacaccaca agccaatccc gcaggccaat tgctgcttct
     5641 tgatgagccg atgaacagtc ttgatgttgc gcaacaaagt gcgttagaca aaattctgag
     5701 cgcgctgtgt cagcaaggac tggcgattgt gatgagcagt cacgatctca accacacgtt
     5761 gcgtcatgcg catcgggcgt ggttgctaaa aggtggaaaa atgctggcca gtggacgcag
     5821 agaagaggtg ctcacgccgc caaatctggc gcaggcctat gggatgaatt ttcgccgtct
     5881 ggatatcgaa ggtcacagaa tgctgatttt gaccatctga tttcattagt atcttgaaaa
     5941 tcgggtaatt acgacgctaa attaatgcaa gaataaaaaa cagaggaacc gtacggaatg
     6001 cgtttctgcc ttattttgat cacagcactg tttctggccg ggtgtagcca ccataaagca
     6061 ccgccgccaa atgccagact ttctgattcg attaccgtta ttgccggttt gaacgaccag
     6121 ctacaaagct ggcatggcac gccgtatcgt tatggtggca tgacgcggcg cggtgtggac
     6181 tgttcgggat ttgtggttgt gacgatgcgc gatcgtttcg atttgcagct gccccgtgaa
     6241 accaaacaac aagcctctat tggcacgcaa attgataaag acaagttgct gccaggtgac
     6301 ctggtctttt tcaaaacggg gtccggacaa aatggtttgc atgtaggtat ttacgatacc
     6361 aacaaccaat ttatccacgc ctctaccagc aagggagtga tgcgttcctc acttgataat
     6421 gtctattggc agaaaaattt ctggcaggcg agacgaatct agtatgtcga aaaatggacg
     6481 gcgatgatac atcgccgtcc atttactcct gaatacagta gtattttgca gacaaaaatt
     6541 ccgtaaatgg attattcgtt tataatcagg ataatctaaa aaaaggaccc ctgaaaaagt
     6601 ggttaacatg gaacaaatga aagttactcc ttctgtaatt gttatgtctt atggcctcat
     6661 cccttttagc cggatactga aaaacatcct tcgagaggga cggttaccat gaagattttt
     6721 ttggagaatc tttatcattc tgattgctat ttcctgccga taagagataa ccagcaagtc
     6781 cttgtcggcg ttgagttaat tacccatttc tccagtgaag atggcacggt gcgtatcccg
     6841 acgagtcggg ttatagcgca acttaccgag gagcaacatt ggcaattatt ttcagagcag
     6901 ttggaattac taaaatcatg ccaacatttt tttattcaac ataaactctt tgcctggctt
     6961 aatttaacgc cacaagtggc tacattatta ttagagaggg ataattacgc aggcgaacta
     7021 ttaaaatatc cgtttattga actgttgatt aatgagtatt acccgcatct caatgaagga
     7081 aaagataacc gcggtctttt atccttatcg caagtgtatc cccttgtgtt aggtaatttg
     7141 ggagcaggca atagcacaat gaaagcggtt tttgatggtc ttttcacccg cgtcatgctg
     7201 gataaaagtt ttattcagca acaaatcacg caccgctcct tcgaaccgtt tattcgtgcg
     7261 atccaggcgc aaatttcccc ttgttgcaat tgcatcattg cgggaggcat tgatacggca
     7321 gaaatattgg cacagattac ccccttcgat ttccatgctc tccagggatg cctgtggcct
     7381 gccgttccca taaatcagat aacgacgttg gttcagcgat aacccttctg tttgctggtg
     7441 tttaagacga gagtaaccgt ctacactatc aaacaggagg atctatgacc ctgtcttttg
     7501 ttacccgctg gcgcgatgaa ttgccagaaa cctatacagc actttcccct acgcctttaa
     7561 ataatgcccg gctggtttgg cataataccg aactggctaa cacgctgagt attccatcgt
     7621 cgctgtttaa aaatggcgca ggtgtctggg gcggcgaagc cctactgcct ggtatgtcac
     7681 cactggcgca ggtttacagt ggtcatcagt tcggcgtctg ggcgggccaa ctgggtgatg
     7741 ggcgcggcat tttactcggc gaacaactgc ttgctgatgg cactacaatg gactggcatc
     7801 tgaaaggtgc tggcctgacg ccttattcgc gaatgggtga tggacgggcg gttttacgtt
     7861 cgacgatacg agaaagtctc gccagtgagg cgatgcatta tctgggcatt ccgacgaccc
     7921 gcgcgttaag tatcgtcacc agcgattcgc cagtgtatcg ggaaacggcg gagccaggcg
     7981 cgatgctgat gcgtgtggca ccaagtcatc tgcgctttgg tcatttcgaa catttttact
     8041 accgccgcga gtcggaaaag gttcgtcagt tagctgactt tgctattcgt cattactggt
     8101 cacatcttga agatgatgag gacaaatacc gtctctggtt tagcgatgtt gtcgcacgta
     8161 ccgcgtcgtt aattgcccaa tggcagacgg tcggctttgc acatggggtg atgaataccg
     8221 acaacatgtc gctgctggga ctgacgcttg attacgggcc gtttggtttt cttgatgatt
     8281 acgaacccgg ttttatttgt aatcactcgg atcatcaagg gcgttatagc tttgataatc
     8341 aacctgctgt cgcgttgtgg aatttacagc gtctggcgca gacattgtca ccatttgttg
     8401 ccgtagatgc cctgaatgag gccctggaca gctatcagca ggttttgttg acgcattatg
     8461 gacaacggat gcggcagaaa ctgggcttca tgacggagca aaaagaggat aacgcgctac
     8521 tgaatgaatt attcagtctg atggcgcgag agcgcagcga ttatacccgc acattccgca
     8581 tgctgagtct gaccgagcag cacagcgcgg cgtcaccgct acgtgatgag tttattgatc
     8641 gtgcggcatt tgatgactgg tttgcccgtt atcgggggcg tttgcaacaa gacgaggtta
     8701 gcgatagtga gcgtcagcaa ctgatgcaaa gcgttaaccc agctctggta ttgcgcaact
     8761 ggttggcgca acgggcgatt gaagcggcag aaaagggtga tatgatggaa ttgcaccgcc
     8821 tgcatgaggc gttgcgaaat cctttcagcg acagagatga tgactatgtc agtcgtccac
     8881 ctgactgggg taaacggctg gaagtcagct gctcgagtta aaggctactt agttaacagc
     8941 agcttgccag cctgagtttt acggagcaga tattcttgcc cgtcatgatc gataatcagt
     9001 ttgccatccg gacctaacag tgtctggctg gtaattcgcc ggatgggctg cggggaagcg
     9061 gtcttgtgat tggcatccgt ttcaggcgtg agttttctgc tatccgcata acgcataaaa
     9121 attaataata attgatataa caatgattct tattatcaat attatggcag gccagagcaa
     9181 gcagtaatgt gttgagaaga caacaagttg cgcagaaatg cccatcccat caggaatggg
     9241 cacgcattca gaagcgggta tctaccgcag aggcgagttt ttcgaccagg cgttcggtat
     9301 cttcccagtc cagacacggg tcggtaatgg attgaccgta agtgagcggc tgaccgccga
     9361 cgattttttg cgctccttcg cgcaggaaac tttccgccat aattccagca atcgccgtag
     9421 agccattgcg gatttgctga caaatatcct cacaaacttc taactggcga cggtgctgct
     9481 tctggcagtt accgtggctg aaatccacca ccagatgttc aggtaaatca aactcgtgca
     9541 gcgtatcgca ggctgcggcg atatcatcgg catgataatt cggttttttg ccgccacgca
     9601 taataatgtg gccatacggg ttgccgctgg tctgatagat ggtcatctga ccatttttgt
     9661 ctggcgagag gaacatatgg ctagcgcggg ctgcgcggat agcatccacg gcaatccgcg
     9721 tgttgccatc ggtaccattt ttaaaaccta ccggacagga gagtgctgaa gccatttcgc
     9781 ggtggatctg actttcggta gtacgagcgc caatcgcgcc ccaactgatt aaatcagcaa
     9841 taaactgacc ggtcaccata tcgagaaact cagtcgcggt agggacaccc agctcattta
     9901 cctgtaaaag taatttgcgc gccagctcca gaccgtgatt tacccgatag ctgccgttta
     9961 aatccggatc ggagattagc cctttccagc cgacaacagt tcgtggtttt tcaaaatagg
    10021 tgcgcattac gatttccagc cgtgactggt actggttgcg cagcgactgc agacgggtgg
    10081 cgtactccat tgcagcggtg agatcgtgga tcgagcaggg gccaataatg accaacagtc
    10141 gcttatcttc accattcagt attttttcaa ttctgcggcg ggagtcggtg acatgggtgg
    10201 cgacgccagg cgttacggga taccgtagcg cgagttcggc gggcgttacc aggctctcaa
    10261 tacgcgcagt acggagttcg tcagttctgt tcattacaag tctcagaaat ttgttgcttc
    10321 tacggcagga ctaccgggaa gtgatgcgca tcacgataaa ccaatcgcag ctgatttcaa
    10381 gtgcgaggtg tgtcacacct agccgggtgg ttagcatgat aacaaaaaaa caaatcaacg
    10441 cactagttct ctagtacatt cggcgactaa ggcccatgat atcgaggatc ttggtggcaa
    10501 tctcttctac cgaataattg gtactgttaa tccacgggat ctgattttta cggtacaagg
    10561 cttccacttc cgcgacttcc attctgcact gacgaagcga ggcatagcga ctgttctccc
    10621 gacgttcctc gcgaatcgcc gccagacgtt ccgggtcgat agtcaggccg aacaatttat
    10681 gctgaagcgg tttgagcgac gcgggtagca ccagattatc catatcgtcg gcaataaagg
    10741 ggtagtttgc cgtgcggata ccaaattgca ttgccagata cagactggtg ggggttttac
    10801 cacagcgaga aacaccgagc aggatcacct gagcctgatc cagattgcgc aacgaaatgc
    10861 cgtcatcgtg ggcaagggtg taatcaatcg ccgcaatgcg cgcatcatat ttattgagat
    10921 tattagggtt aaggccatgg gtacgatgag caatcggcgt tggatccagt ttcatctctt
    10981 gttgtagcgg ggcaaccagc gcctgaacga tatcctggca aaagccttca ctttgcaaga
    11041 tgatggcgcg aatctccggc aacacgatgg agtagaagac cagcgggcgc acacctgtct
    11101 ggtgataaat tgcgtcaatc tgatccttca ctgcccgtgc acggctctca ttttcgacaa
    11161 acggcagcgt aatgctgctg atagtgacgg gaaattgtga cattactgcg tgtcctaata
    11221 cctccgcagt tattgccgta ccatcagaaa tataaaaaac gtggcgatca acagcattat
    11281 ccattttgtt cttcccgtga tgcagacata attctatgaa agcataaatt aaaaacgcac
    11341 agaagcgtag gaggtaatgt ctggtttata aaatgaacct tcaattttat tttttatgaa
    11401 aacagtattt catttttatg gtttcgttta taccgatggt ttatgtggaa attgtcgaat
    11461 agagcaggtt tgcgcaacgc
//
LOCUS       DADMHM010000126        11405 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.127, whole genome shotgun sequence.
ACCESSION   DADMHM010000126 DADMHM010000000
VERSION     DADMHM010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11405)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11405)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11405
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.127"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            1..922
                     /gene="gap"
                     /locus_tag="JN125_002870"
                     /pseudo
     CDS             1..922
                     /gene="gap"
                     /locus_tag="JN125_002870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310049.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
     gene            complement(964..2403)
                     /gene="aldA"
                     /locus_tag="JN125_002871"
     CDS             complement(964..2403)
                     /gene="aldA"
                     /locus_tag="JN125_002871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HAY8872588.1"
                     /translation="MSVPVQHPMYIDGQFVTWRGDAWIDVVNPATEAVISRIPDGQAE
                     DARKAIDAAERAQPEWEALPAIERASWLRKISAGIRERASEISALIVEEGGKIQQLAE
                     VEVAFTADYIDYMAEWARRYEGEIIQSDRPGENILLFKRALGVTTGILPWNFPFFLIA
                     RKMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAG
                     NPKVAMVSMTGSVSAGEKIMATAAKNITKVCLELGGKAPAIVMDDADLELAVKAIVDS
                     RVINSGQVCNCAERVYVQKGIYDQFVNRLGEAMQAVQFGNPAERNDIAMGLLINAAAL
                     ERVEQKVARAVEEGARVALGGKAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVV
                     AFDTLEEAISMANDSDYGLTSSIYTQNLNVAMKAIKGLKFGETYINRENFEAMQGFHA
                     GWRKSGIGGADGKHGLHEYLQTQVVYLQS"
     gene            complement(2600..3400)
                     /locus_tag="JN125_002872"
     CDS             complement(2600..3400)
                     /locus_tag="JN125_002872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HAY8872589.1"
                     /translation="MNITPFPTLSPATIDAINVIGQWLAQDDFSGEVPYQADCVILAG
                     NAVMPTIDAACKIARDQQIPLLISGGIGHSTTFLYSVIAQHPHYNTIRTTGRAEATIL
                     ADIAHQFWHIPHEKIWIEDQSTNCGENARFSIALFNQAVERVHTAIVVQDPTMQRRTM
                     ATFRRMTGDNPDAPRWLSYPGFVPQLGNNADSVIFINQLQGLWPVERYLSLLTGELPR
                     LRDDSDGYGPRGRDFIVHVDFPAEVIHAWQTLKHDAVLIEAMESRSLR"
     gene            complement(3672..7574)
                     /gene="hrpA"
                     /locus_tag="JN125_002873"
     CDS             complement(3672..7574)
                     /gene="hrpA"
                     /locus_tag="JN125_002873"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310042.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase HrpA"
                     /protein_id="HAY8872590.1"
                     /translation="MTEQQKLTFTALQQRLDSLMLRDRLRFSRRLHGVKKVKNPDAQQ
                     DIFQEMAKEIDQAAGKVLLREAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGET
                     GSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRF
                     SDHVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLP
                     RRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQ
                     AIFDAVDELSQESPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNR
                     VFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQAS
                     ANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAA
                     FPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLE
                     AQKHGCVREAMIITSALSIQDPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWNYLG
                     EQQKALSSNAFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREIHI
                     ALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWVMVAELVETSRLWGR
                     IAARIDPEWVEPVAQHLIKRTYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQI
                     DPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDETLFEF
                     YDQRISHDVISARHFDSWWKKVSRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGN
                     LKLRLSYQFEPGADADGVTVHIPLPLLNQVEESGFEWQIPGLRRELVIALIKSLPKPV
                     RRNFVPAPNYAEAFLGRVTPLELPLLDSLEREIRRMTGVTVDREDWHWDQVPDHLKIT
                     FRVVDDKNKKLKEGRSLQDLKDALKGKVQETLSAVADDGIEQSGLHIWSFGQLPESYE
                     QKRGNYKVKAWPALVDERDSVAIKLFDNPLEQKQAMWNGLRRLLLLNIPSPIKYLHEK
                     LPNKAKLGLYFNPYGKVLELIDDCISCGVDQLIDANGGPVWTEEGFAALHEKVRAELN
                     DTVVDIAKQVEQILTAVFNINKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTGNGFK
                     RLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDEDVK
                     EIRWMIEELRVSYFAQQLGTPYPISDKRILQAMEQISG"
     gene            7775..8380
                     /gene="azoR"
                     /locus_tag="JN125_002874"
     CDS             7775..8380
                     /gene="azoR"
                     /locus_tag="JN125_002874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-dependent NADH-azoreductase"
                     /protein_id="HAY8872591.1"
                     /translation="MSKVLVLKSSILAGYSQSNQLSDYFVEQWREKHSADEITVRDLA
                     ANPIPVLDGELVGALRPSDAPLTPRQQEALALSDELIAELKAHDVIVIAAPMYNFNIS
                     TQLKNYFDLVARAGVTFRYTENGPEGLVTGKKAIVITSRGGIHKDGPTDLVTPYLSTF
                     LGFIGITDVKFVFAEGIAYGPEMAAKAQSDAKAAIDSIVAA"
     gene            complement(8431..9747)
                     /locus_tag="JN125_002875"
     CDS             complement(8431..9747)
                     /locus_tag="JN125_002875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310040.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2/dual specificity phosphatase
                     family protein"
                     /protein_id="HAY8872592.1"
                     /translation="MITERRNVLLQGAGWLLLLAPFFFFTYGSLNQFTAVQDLNSHDI
                     PSQVFGWETAIPFLPWTIVPYWSLDLLYGFSLFVCSTTFEQRRLVHRLILATVMACCG
                     FLLYPLKFSFIRPEVSGVTGWLFSQLELFDLPYNQSPSLHIILCWLLWRHFRQHLAER
                     WRKVCGGWFLLIAISTLTTWQHHFIDVITGLAVGMLIDWMVPVDRRWNYQKPDQRRIK
                     IALPYVVGAGSCIVLMELMVMIQLWWSVWLCWPVLSLLIIGRGYGGLGAITTGKDSQG
                     KLPPAVYWLTLPWRIGMWLSMRWFCRRLEPVSKITAGVYLGEFPRHIPAQNAVLDVTF
                     EFPRGRATKDRLYFCVPMLDLVVPEEGELRQAVAMLETLREEQGSVLVHCALGLSRSA
                     LVVAAWLLCYGHCKTVDEAISYIRARRSHIVLKEDHKAMLKLWENR"
     gene            complement(9737..11405)
                     /locus_tag="JN125_002876"
                     /pseudo
     CDS             complement(9737..11405)
                     /locus_tag="JN125_002876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415928.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional alpha/beta hydrolase/class I
                     SAM-dependent methyltransferase"
BASE COUNT         2847 a         3092 c         2707 g         2759 t
ORIGIN      
        1 agacgttgtc gctattaatg atctcacttc cccaaaaatt ctcgcctacc tgctgaaaca
       61 tgattcaaac tacggaccat tcccctagag cgttgatttt acgaaagatt cacttatcgt
      121 tgatgggaaa agtatcgcgg tttacgccga aaaagaggct aaaaatattc cgtggaaagc
      181 gaaaggtgca gaaatcattg tcgaatgtac tggcttttat acctccgccg agaaatcgca
      241 ggcgcatctt gatgctggtg cgaagaaggt gttgatttcc gcccctgccg gtgaaatgaa
      301 aactatcgtt tataacgtca atgacgacac tctggatggc aacgacacca ttgtttccgt
      361 ggcgtcatgc accactaact gccttgcgcc gatggccaaa gccttgcatg acagtttcgg
      421 gatagaagtc ggcacgatga cgaccattca tgcctatact ggcacccagt cactggtgga
      481 tggcccacgt ggtaaagatt tacgtgcttc acgcgcagcg gcagaaaata tcattcccca
      541 cactacgggg gcggcaaaag ccattggtct ggagatcccg gaactgagcg gcaaactgaa
      601 aggtcatgcg caacgcgtgc cggtgaaaac aggttcggtc actgaactgg tatcgattct
      661 cggaaaaaaa gtgactgccg aagaggtgaa taacgcactt aaacaagcaa ccaccaataa
      721 cgagtcattt ggttataccg atgaagaaat agtctcttcc gatatcattg gcagccattt
      781 cggttcggtg tttgatgcta cgcaaacgga aattaccgcc gtgggcgatt tacaactggt
      841 gaaaacggtc gcctggtacg ataacgaata tggcttcgtc acgcagctta ttcgcaccct
      901 cgaaaaattc gctaaactct gacgcgtaca ggcggaggaa aaaacctccg cctcttttac
      961 tcattacgac tgtaaataaa ccacctgggt ctgcagatat tcatgcaggc catgtttacc
     1021 atctgcgccg ccaataccgg atttacgcca tccggcgtgg aagccttgca tagcttcgaa
     1081 gttttcacgg ttgatgtaag tttcaccaaa cttcagccct ttaatggctt tcatcgcgac
     1141 gttcagattt tgggtataga ttgatgaggt caggccgtaa tcactgtcat tagccattga
     1201 gatagcctct tccagcgtgt caaatgcgac caccggcaga accgggccaa aggtttcctc
     1261 atgcataatc gacatttctt ggcgaacatc cagcagcaat gtcggcggat aataatatcc
     1321 tttcccctct accgctttgc cacccaacgc cactctcgcc ccttcttcta ctgcgcgcgc
     1381 cactttttgc tcaacccttt ccaacgccgc ggcgttaatc aacagcccca tcgcaatgtc
     1441 gttgcgttca gcggggttac caaattgaac cgcctgcatc gcttcaccca gccgattgac
     1501 gaactgatca taaatgcctt tctgtacata aacacgttct gcacagttac acacttgccc
     1561 actattaatg acgcgtgaat caacgatggc tttgactgcc agttcaagat cggcatcgtc
     1621 cattacgata gctggtgctt taccccccaa ttccagacac actttggtga tgtttttcgc
     1681 cgcagtcgcc atgatcttct cacctgcaga gacgctgcct gtcatactga ccattgcgac
     1741 ctttgggtta cccgccagtt cttgcccaac ggtttcacca cgccccagta caaggttaaa
     1801 cacgccgcgc ggaaggccta tttcatcgac gattttggcg aatgcaatcg cattgtttgg
     1861 cgtaaattca ctaggtttaa tgacgatggt attaccggtc aaaagagcgg gagccatttt
     1921 gcgggcaatg aggaagaacg ggaagttcca cggcagaatg ccggtagtca caccaagcgc
     1981 acgtttaaac aaaagaatat tttctcctgg acgatcgctt tgaataatct cgccctcgta
     2041 acgccgtgcc cactccgcca tgtaatcgat atagtcggca gtaaaagcca cttcgacttc
     2101 agccagctgc tggatcttgc ccccttcttc aacaatcagc gcactgattt cactggcgcg
     2161 ttcgcggatc ccggcggaga ttttgcgcaa ccaactggcg cgttcaatag caggcaacgc
     2221 ttcccattct ggttgtgcac gttctgctgc atcgattgcc ttacgggcat cctcggcctg
     2281 accatcgggt atgcgggaaa tgacagcctc tgtagcaggg tttaccacat caatccatgc
     2341 gtctccacgc caggtaacaa actgtccatc gatatacata ggatgttgaa cgggtactga
     2401 catgggcgac tcctgtgatt tatatgtttg ttcttggtaa atacattgtt aattaacatc
     2461 aatcatcata gagacggcat cgtgaaagga caattctgtg aagggcttca taaaaacaag
     2521 tgtaaaagga ataaaaggca gaaataaaag tcaggagtca tgcccgtttg caaacaagtg
     2581 gttcacaaac gggcaatttt taacgtaacg agcgactttc catcgcctcg atgagcaccg
     2641 catcgtgttt aagcgtttgc catgcatgga tgacttctgc cggaaaatca acgtgaacga
     2701 taaaatctcg cccgcgggga ccgtagccat cgctatcatc gcgtaaacgc ggcagctcgc
     2761 cagtgagtag tgagagataa cgctcaaccg gccataatcc ttgtaactga ttaataaaga
     2821 ttacactgtc tgcgttattt cctaactgag gaacgaatcc gggataactt aaccagcgtg
     2881 gtgcatcggg attgtcccca gtcatacggc ggaacgtcgc catcgtgcgc cgctgcatgg
     2941 tggggtcctg aacaacgata gccgtatgaa ctcgttctac ggcctgatta aatagcgcga
     3001 tgctaaagcg tgcgttttca ccgcagtttg ttgactggtc ttcaatccag attttttcat
     3061 gcggaatgtg ccagaactga tgagcgatat ccgccaggat ggtcgcttct gctctgccag
     3121 tggtgcggat agtgttgtag tgcggatgct gtgcgatgac gctatacaaa aaagttgtcg
     3181 agtgaccgat accaccacta atcagtaaag gaatttgctg atcgcgagca atcttacatg
     3241 ccgcgtcgat agtcggcata accgcattgc ctgcaaggat cacgcaatcg gcctgatacg
     3301 gcacctcacc ggagaaatca tcctgcgcca gccactgtcc gataacattt atggcatcta
     3361 tagttgccgg cgaaagcgtc ggaaacgggg taatgttcat ggttcctcct tatcgttccc
     3421 ttaagaatac tgcgtgagat aatagtgaga agctgagcac tctgaaagga ggaagtcgta
     3481 tgtccttaac cgccactccg caagcctgac atatctttta aggaaatgct gtagataaac
     3541 attattcatc ttgcagcaga gaattgtatt tttctgaatt cctgaatttt tacccttacc
     3601 gttttagaat taataaaaaa cccggcgcta aatgcttacc gggttttaga tttattaggc
     3661 aaatagcagg gttaaccgct aatctgctcc atcgcctgca aaatacgctt atctgaaatc
     3721 ggataaggcg taccaagttg ttgagcgaag taactaacgc gcagctcttc tatcatccaa
     3781 cggatctctt tcacgtcttc atcctcacga cgtgcaggcg gcagtttgtt gatccattgc
     3841 tgccacgcct gctggacgtt ttcgactttc agcatctgtg cacgatcgcg atgtggatca
     3901 accgccagtt tttccagtcg tttttcaatc gcctgcaaat atcgcagcgt gtcgcccagc
     3961 cgtttgaagc cgttaccagt gacaaaaccg cgatatacca acccgcccat ctgcgcttta
     4021 atgtcagaaa gccccagtgc catggtcata tccacccgcc ctttcagacg tttgttgata
     4081 ttgaacactg ccgtaagaat ttgctcgacc tgcttcgcaa tatctaccac cgtgtcgttc
     4141 agttcggcac gcactttctc atgcagcgca gcaaagcctt cttccgtcca gaccgggcca
     4201 ccattggcgt cgatcagttg atccacaccg caggagatac agtcgtcgat cagctccagc
     4261 actttgccat acgggttgaa gtacagtccc agcttggctt tgttcggtaa cttttcatgt
     4321 aaatacttga tcggcgaggg aatatttagc agcagtagac ggcgaagacc attccacatt
     4381 gcctgttttt gctccagcgg gttatcaaac agtttgatcg ccacgctgtc gcgttcatcc
     4441 accagcgccg gccacgcctt cactttatag ttgccacgct tctgttcgta actttccggc
     4501 agctgaccaa aactccagat atgtaagccg ctctgctcga taccgtcatc cgccaccgcg
     4561 gacagcgttt cctgcacttt gcctttcagc gcatctttca gatcttgtag cgagcgccct
     4621 tcttttagct tcttgttttt gtcatccacc acgcggaagg tgattttcag gtgatcgggc
     4681 acctgatccc agtgccagtc ttcgcggtca acggtaacgc cggtcatccg ccgtatctcg
     4741 cgctcaaggc tgtcgagcaa cggtaactcc agcggtgtga cgcggcctaa aaacgcttcg
     4801 gcgtagtttg gtgcaggcac aaaattacgg cgtaccggtt tcggcaacga tttaatcaga
     4861 gcaatcacca attcgcggcg cagaccgggg atctgccatt caaacccgct ttcctcaacc
     4921 tggttaagta acggcagcgg aatatgtacg gtcacaccgt ccgcgtctgc gcctggctca
     4981 aactgatagc tcaaacgcag cttgagattg ccctgatgcc agaagttcgg gtaatccagc
     5041 ttgctgattt tttccgcccc ttctttgatc aacatgctct tttcaaagtt gagcaaatca
     5101 ggcgtttcgc ggctgacttt tttccaccag ctatcgaagt gacgagcgga gattacatcg
     5161 tggctgatgc gctggtcgta gaactcaaac agcgtttcgt catcaaccag aatatcgcgg
     5221 cgacgtgatt tgtgttccag ctcttccact tcggcccgca gtttcaggtt ttcacggaag
     5281 aatgcgtgac gcgtctgcca gtcaccttcc accagcgcat ggcgaataaa gagttcacga
     5341 cataacgccg gatcgatctg gctgtagttg accttgcgcg ctgcaacaat cggcaaacca
     5401 taaacagtga ctttttccgt tgccatcacc gcgccctgcg cccgttccca gtgcggttcg
     5461 ctgtaggtac gtttaatcaa atgctgagcg acaggctcca cccattccgg gtcgatacgc
     5521 gcagcaatgc gcccccacag gcggctggtt tctaccagtt ccgccaccat tacccatttc
     5581 ggcggttttt tgaataaacc agaaccgggg aagatggaga aacgcgcgtt acgtgcgccg
     5641 gtatattctt gtttatcggc atctttcatg ccgatatggg aaagtaaacc cgtcagcaac
     5701 gcaatgtgaa tttcgcgata ctccgccggt tcgctgttaa ccggaatgcc aagttctttc
     5761 accacctgac gcaactgggt gtagatatcc tgccattcgc gcacgcgcag atagttgaga
     5821 taatcggtac gacacaggcg acggaaggcg tttgaagaaa gcgccttttg ctgctcgcca
     5881 agataattcc acagatttac aaacgcgagg aagtcggatt ctttgtcgtg gaagcgacga
     5941 tgtttttcgt ccgatgcctg ctgtttgtcc atcggccgct cacgcgggtc ctgaatggag
     6001 agcgcggacg tgataatcat cgcctcacgc acgcagccat gtttctgcgc ttccagcacc
     6061 atacgcgcca gacgaggatc gaccggcagt tgcgagagct ggcgaccgag cggcgtcagt
     6121 ttataggcgc tggcctgttc atccgtggtg atcgcgccca gttcttcgag cagacgcacg
     6181 ccatcctgga tattgcgttt atccggtgct tcgacaaacg ggaacgcagc gatatcgccc
     6241 agccccagcg cggtcatctg caaaataacc gaggccaggt tggtacgcag aatctccgga
     6301 tcggtaaact ccgggcgcga gaggaaatcg tcttcggaat agagacgaat acagatccct
     6361 tcggacacac gaccacaacg gcctttacgc tgattggcag acgcctgtga aatgggttca
     6421 atcggcaaac gctgcacttt ggtgcgatag ctgtagcggc tgatacgcgc cgtaccgggg
     6481 tcgataacgt atttaatccc cggtacagtc agcgaggttt ccgcgacgtt ggtcgccagc
     6541 acaatgcgtc gcccgctgtg cgactggaac acgcggttct gttcgctatt cgaaagccgc
     6601 gcataaagcg gcaagatttc ggtatggcgt aagttcagct tgttcagcgc atcggcggta
     6661 tcgcgaattt cccgctcgcc gctcataaag atcagaatgt cgccagggct ttcctggctc
     6721 agttcgtcta cggcgtcaaa aatcgcctgc aactgatcgc gctcggtgtc atcggcttct
     6781 tcaacaatcg ggcgatagcg cacttccacc ggataggtcc gaccggagac ttcgataatc
     6841 ggcgcattat taaagtggcg agaaaagcgt tccgggtcga tagtcgcgga agtgataatg
     6901 atttttaggt caggacgccg cggcagcaac tctttcaaat agccgagcag aaaatcgata
     6961 ttcaggctgc gttcgtgtgc ttcgtcaata atgatggtgt cgtactgcat cagcaggcgg
     7021 tcttgctgga tctccgccag caggataccg tcggtcatca gcttgaccat cgtgttatca
     7081 cttacgtgat cgctgaaacg cactttgtaa ccgatgcaac cgcctggctc cgttttcagc
     7141 tcttccgcaa tacggttcgc caccgttctt gccgccagac gacgcggctg ggtatggccg
     7201 atcagtcctt taatcccgcg ccccagctcc atacagattt tcggtagctg ggtcgtttta
     7261 ccggaaccgg tttccccggc gacgatcacc acctggtgat cacgaatcgc ttcgagaata
     7321 tcctgttttt tctgactaac tggcaaattg tccggataag tgatttccgg tcgtgccgct
     7381 tcacgcagca ggactttccc tgccgcctgg tcaatctctt tcgccatctc ctggaaaatg
     7441 tcctgttgtg catcaggatt tttaaccttc ttaacaccat gcagacggcg agaaaaacgc
     7501 agtctgtcgc gcagcatcaa cgaatccagc cgctgctgca aagcagtaaa ggtcaatttt
     7561 tgttgttctg tcataacgtt agtgggcagt agtctgcctg attaattttc ttttaaatga
     7621 tagatataga gtaccacatc gcggctttct atgcgttgtt caataaattc gaacataggc
     7681 ttcgatttat tgcgctatct ctgtggcagg attgtgaata aagtgtcagc aagcaacggg
     7741 gcatcgccaa ttcaaacatc tataaggaaa caccatgagc aaggtattag ttcttaaatc
     7801 cagcatcctg gcagggtact ctcagtctaa tcagttgtcc gattattttg ttgaacaatg
     7861 gcgcgaaaag cactccgctg atgaaatcac cgttcgcgac ctggctgcaa atccgattcc
     7921 ggtactggat ggcgaactgg ttggcgctct gcgtccgagc gatgcgccgc tgactccgcg
     7981 tcagcaggaa gctctggcgc tttccgatga gctgattgcc gagctgaaag cccacgacgt
     8041 tatcgttatt gcggcaccga tgtataactt caacatctca actcagttga aaaactattt
     8101 tgacctggtt gcacgcgcag gcgttacttt ccgctatacc gagaacggtc cggaaggtct
     8161 ggtaacgggt aaaaaagcca tcgttattac cagccgcggt gggatccaca aagatggacc
     8221 aacggacctg gtgacgccgt atctgtccac gttcctcggc tttatcggca ttaccgatgt
     8281 gaaatttgtc ttcgccgaag ggatcgcata cggtccggaa atggcagcga aagcgcagtc
     8341 tgacgcgaaa gcggccatcg acagcattgt tgctgcataa ccggacacga tcttgatgtg
     8401 gactgtagtt cagtccacat ctcaatccac ttacctgttt tcccataatt tcagcatcgc
     8461 tttgtgatct tccttaagca caatatgcga acgtctggct cgaatataac taatcgcttc
     8521 atcaacggtt ttacagtgtc cgtaacataa caaccatgcc gccactacca gcgcactgcg
     8581 cgataatccc aacgcgcaat ggaccagaac gctgccttgc tcttcgcgta atgtttccag
     8641 catcgccacg gcctgtcgga gctccccctc ttccggaacc accagatcca gcatcggtac
     8701 acagaaatag agtcgatctt ttgtcgctcg tccccgaggg aattcaaagg tgacgtccag
     8761 aaccgcattc tgtgccggaa tatgtcgtgg aaactcccct aaataaacac cagcagtaat
     8821 tttgctcacc ggctccaggc gacgacaaaa ccaacgcata gacagccaca tcccgatgcg
     8881 ccagggcaat gtcagccagt aaacggcggg cgggagtttc ccctgactat ctttccctgt
     8941 tgttatcgcg ccaagcccac cgtacccacg gccaataatg agtagcgata atactggcca
     9001 acataaccag actgaccacc ataactgaat catcaccatt agctccatca acacaatgca
     9061 cgagcccgcg cctacgacat atggcagtgc tattttgatt cgacgttgat caggtttctg
     9121 ataattccaa cgacgatcga cgggcaccat ccagtcaatc aacataccta ccgccagccc
     9181 tgtgatgaca tcaataaaat gatgctgcca ggtcgtcaga gtagaaatag cgatgagtaa
     9241 aaaccatccg ccacagactt tacgccacct ctcagccaga tgctgacgaa agtgacgcca
     9301 aagtagccag cagagaataa tatgcagcga aggagactgg ttataaggca gatcaaacag
     9361 ttcaagttgc gaaaatagcc atcccgtcac cccactcact tcaggacgga taaaactaaa
     9421 cttcagcgga tagagcaaaa aaccgcagca ggccattacc gttgccagaa taagccggtg
     9481 gacaagtcgg cgctgttcga atgtcgtgct acaaacgaac agcgaaaatc catataaaag
     9541 atccagactc cagtaaggaa caatagtcca gggaagaaaa gggatcgccg tttcccaacc
     9601 gaatacctga ctggggatat catggctgtt aaggtcctga accgcggtga actgattaag
     9661 agatccatag gtgaagaaaa aaaacggggc cagcaacaat aaccagccag cgccttgtag
     9721 caatacgttc cgacgttcag ttatcacgac gcaccgccat cgaaaccgta aaaatacccc
     9781 actcatcaat ccgttgtgtg catttatcaa atccggcatc acgcacgagt gaatccatct
     9841 ccccttgcga acgcacgcgc attacccacg gtttaccatc tttatgactg gttaacaccc
     9901 cggcaatcat ctccagttga gggtgccacg gctgcccggt gtagatgaga atgccgaccg
     9961 gttcgatggc attggcaaga cctgcgagtg agttttttac ctgctcattt tcgggaaaaa
    10021 gctcatacag tccagagaca attgccagcg taggccgcgg agttaacgcg ctgagttcct
    10081 ccgggttaaa cgcatcgccc tgttcaaaac gcacccgccc agacattccc cgttgggcaa
    10141 tcatctcttg cccctgtgca acatttaact cgctgtaatc acgtaacaaa atatcgctta
    10201 cggcaggctc gtttgccagc gcatccagta catagcgccc atgccctgcg gcaatgtcaa
    10261 ccacgcggac ggctaaacct ttggcgtgga gatcggcaac ggcttgttta atcagtattt
    10321 gtaaatgggt tttgcgctgg cgaataccgc gccagccaac actgttcagg tagattttgt
    10381 cgattaagcg cccgaatgcg ttactacctt gcggttgatt ttgatagaca taatccagcg
    10441 aactgcctga atcaaagccg gtgctcattc cgagatgcag gcccgcagag tgcgtcccga
    10501 acaatttcat cgcctttcgc ataaagcgat acgctaaatc aaccggcgat aatggcacgg
    10561 gtccaccaga aagtagccgc cattgatccg ctgatggtcc tgtgcagtct tcatgctgat
    10621 aatcaaattt ttgcgatttg ttagcatata aacgactaat aaagctttgc attttttcaa
    10681 atgccagcgc cctgttctct tcacccaacg tgtcgtgata aaagcctggc agcagatgca
    10741 gctctttcag agggctacgt aatctctgat aaaaatcaat ctgcggttgg cgatgcacca
    10801 catagtcatc gcctgatatc agaagttgcg tggggagcgt aatcgccgcc gcatctttaa
    10861 taatacgttc agacgtttta tagagatcga gcaagatatt gacggcaatc gcccgtgtga
    10921 tcagcggatc attattgaaa ctcgccaccc gttgccgatc gtgggtcaaa tagcgtcctt
    10981 tcacatagga attaataaaa aacagaccac gcagacgatg ccataacgcc agcgcaggac
    11041 gtgccagcgg cacatacaat ttaaccttaa aggccggaga agccagcacc agcccgcgaa
    11101 ttgcaggcgc ataatcatga acctatgtgg caaccagcac tgcgccgacg ctttgcgcga
    11161 tcacaaccac ctcttccagt ccaacctagc tgtcgctggc agcaaaacgg acaaattcat
    11221 cgacatcctg cactgaacgc gcaagagatg ggctataacc acgcggcccc gaagtttttc
    11281 catgcccccg ggcatcccat gcataaaaag cagtatctgg catcgccagt tcatcaacga
    11341 tatgttgtag acgaccagaa tgttcatggc cacgatgaaa taagacaatg acctttttcg
    11401 cccct
//
LOCUS       DADMHM010000127        11284 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.128, whole genome shotgun sequence.
ACCESSION   DADMHM010000127 DADMHM010000000
VERSION     DADMHM010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11284)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11284)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11284
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.128"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(61..210)
                     /locus_tag="JN125_002877"
                     /pseudo
     CDS             complement(61..210)
                     /locus_tag="JN125_002877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858395.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
     gene            487..1362
                     /locus_tag="JN125_002878"
     CDS             487..1362
                     /locus_tag="JN125_002878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001224622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-regulated protein"
                     /protein_id="HAY8872593.1"
                     /translation="MRKFILISMITLASVSLGACRQNVTIKQDAPGQKAFLIDGQIYD
                     LHSGKIISSSELLADLATARHLIIGEKHDNAEHHQIELWLIQNLLIQRPQGSVLLEML
                     TSDQQPRVNQVKCWLKDNPVVRDSRVQELLNWQKGWSWEMYGDIVMQLLRGPYPLLNA
                     NIGREQMLALYKKNEFPKGKKSTAPVVQEALRETIIAMHEGNLESQQLTSMLSVQQQR
                     DRYMARQLLSAPVPSLLIAGGYHASKSMGVPLHMEDLATGTHPVVLMLAEKGMNITVD
                     HADYVWFVAPDTTKR"
     gene            1370..2146
                     /locus_tag="JN125_002879"
     CDS             1370..2146
                     /locus_tag="JN125_002879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004095468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HAY8872594.1"
                     /translation="MMNILHFPQSVKWSSWFICSLLLHGLIFLTFIWRFSEVQPAMSP
                     APAIMLQWAEIIEAPSSPLSLPVGIAQQESAVTEEKQQTEDRQQRPVTEDSDATIEIT
                     RKKKSSDGEKKKTRPPRKIKAQTSDSNPTAVSSNAAPQALVESSRIAAPFNSDSTKRD
                     NSEASWESRVKGHLNRYKRYPGDARKRARTGTAVVTFTVNTEGTIVSSFLEISSGTLS
                     LDREAIAVLERAQPLPKPPPEILEGGLFKVKMPITFKLKE"
     gene            2315..4576
                     /locus_tag="JN125_002880"
     CDS             2315..4576
                     /locus_tag="JN125_002880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016536327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HAY8872595.1"
                     /translation="MNVIKLAIGSGILLLSCGAYSQSISEKTNSDKKGAAEFSPLSVS
                     VGKTTSEQEALEKTGATSSRTTDKNLQSLDATVRSMPGTYTQIDPGQGAISVNIRGMS
                     GFGRVNTMVDGITQSFYGTSTSGTTAHGSTNNMAGVLIDPNLLVAVDVTRGDSSGSEG
                     INALAGSANMRTIGVDDVIFNGNTYGLRSRFSVGSNGLGRSGMIALGGKSDAFTDTGS
                     IGVMAAVSGSSVYSNFSNGSGINSKEFGYDKYMKQNPKSQLYKMDIRPDEFNSFELSA
                     RTYENKFTRRDITSDDYYIKYHYTPFSELIDFNVTASTSRGNQKYRDGSLYTFYKTSA
                     QNRSDALDINNTSRFTVADNELEFMLGSKLMRTRYDRTIHSAAGDPKANQESIENNPF
                     APSGQQDISALYTGLKVTRGIWEADFNLNYTRNRITGYKPACDSRVICVPQGSYDIDD
                     KEGGFNPSVQLSAQVTPWLQPFIGYSKSMRAPNIQEMFFSNSGGASMNPFLKPERAET
                     WQAGFNIDTRDLLVEQDALRFKALAYRSRIQNYIYSESYLVCSGGRKCSMAEVIGNDW
                     EGISDEYSDNMYIYVNSASDVIAKGFELEMDYDAGFAFGRLSFSQQQTDQPTSIASTY
                     FGAGDMTELPRKYMTLDTGVRFFDNALTLGTIIKYTGKARRLSPDFEQDEHTGAIIKQ
                     DLPQIPTIIDLYGTYEYNRNLTLKLSVQNLMNRDYSEALNKLNMMPGLGDESHPANSA
                     RGRTWIFGGDIRF"
     gene            4645..5820
                     /gene="senB"
                     /locus_tag="JN125_002881"
     CDS             4645..5820
                     /gene="senB"
                     /locus_tag="JN125_002881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001020413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterotoxin production-related protein TieB"
                     /protein_id="HAY8872596.1"
                     /translation="MNIFTLSKAPLYLLISLFLPTMAMAIDPPERELSRFALKTNYLQ
                     SPDEGVYELAFDNASKKVFAAVTDRVNREANKGYLYSFNSDSLKVENKYTMPYRAFSL
                     AINQDKHQLYIGHTQSASLRISMFDTPTGKLVRTSDRLSFKAANAADSRFEHLRHMVY
                     SQDSDTLFVSYSNMLKTAEGMKPLHKLLMLDGTTLALKGEVKDAYKGTAYGLTMDEKT
                     QKIYVGGRDYINEIDAKNQTLLRTIPLKDPRPQITSVQNLAVDSASDRAFVVVFDHDD
                     RSGTKDGLYIFDLRDGKQLGYVHTGAGANAVKYNPKYNELYVTNFTSGTISVVDATKY
                     SITREFNMPVYPNQMVLSDDMDTLYIGIKEGFNRDWDPDVFVEGAKERILSIDLKKS"
     gene            complement(6193..6381)
                     /locus_tag="JN125_002882"
                     /pseudo
     CDS             complement(6193..6381)
                     /locus_tag="JN125_002882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000198547.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            6444..6629
                     /locus_tag="JN125_002883"
                     /pseudo
     CDS             6444..6629
                     /locus_tag="JN125_002883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001775038.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
     gene            6772..6993
                     /locus_tag="JN125_002884"
                     /pseudo
     CDS             6772..6993
                     /locus_tag="JN125_002884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
     gene            complement(7014..7076)
                     /locus_tag="JN125_002885"
                     /pseudo
     CDS             complement(7014..7076)
                     /locus_tag="JN125_002885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001743492.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
     gene            7527..8939
                     /gene="ospC1"
                     /locus_tag="JN125_002886"
     CDS             7527..8939
                     /gene="ospC1"
                     /locus_tag="JN125_002886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspC1"
                     /protein_id="HAY8872597.1"
                     /translation="MNISETLNSANTQCNIDSMDNRLHTLFPKVTSVRNAAQQTMPDE
                     KNLKDSANIIKDFFRKTIAAQSYSRMFSQGSNFKSLNIAIDAPSDAKASFKAIEHLDR
                     LSKHYISEIREKLHPLSAEELNLLSLIINSDLIFRHQSNSDLSDKILNIKSFNKIQSE
                     GICTKRNTYADDIKKIANHDFVFFGVEISSHQKKHPLNTKHHTVDFGANAYIIDHDSP
                     YGYMTLTDHFDNAIPPVFYHEHQSFLDKFSEVNKEVSRYVHGSKGIIDVPIFNTKDMK
                     LGLGLYLIDFIRKSEDQSFKEFCYGKNLAPVDLDRIINFVFQPEYHIPRMVSTENFKK
                     VKIREISLEEAVTASNYEEINKQVTNKKIALQTLFLSITNQKEDVALYILSNFEITRQ
                     DVISIKHELYDIEYLLSAHNSSCKVLEYFINKGLVDVNTKFKKTNSGDCMLDNAIKYE
                     NAEMIKLLLKYGATSDNKYI"
     gene            complement(9043..9191)
                     /locus_tag="JN125_002887"
                     /pseudo
     CDS             complement(9043..9191)
                     /locus_tag="JN125_002887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611146.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            9267..10964
                     /gene="ospD3"
                     /locus_tag="JN125_002888"
     CDS             9267..10964
                     /gene="ospD3"
                     /locus_tag="JN125_002888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector OspD3"
                     /protein_id="HAY8872598.1"
                     /translation="MPSVNLIPSRKICLQNMINKDNVSVETIQSLLHSKQLPYFSDKR
                     SFLLNLNCQVTDHSGRLIVCRHLASYWIAQFNKSSGHVDYHHFAFPDEIKNYVSVSEE
                     EKAINVPAIIYFVENGSWGDIIFYIFNEMIFHSEKSRALEISTSNHNMALGLKIKETK
                     NGGDFVIQLYDPNHTATHLRAEFNKFNLAKIKKLTVDNFLDEKHQKCYGLISDGMSIF
                     VDRHTPTSMSSIIRWPNNLLHPKVIYHAMRMGLTELIQKVTRVVQLSDLSDNTLELLL
                     AAKNDDGLSGLLLALQNGHSDTILAYGELLETSGLNLDKTVELLTAEGMGGRISGLSQ
                     ALQNGHAETIKTYGRLLKKRAINIEYNKLKNLLTAYYYDEVHRQIPGLMFALQNGHAD
                     AIRAYGELILSPPLLNSEDIVNLLASRRYDNVPGLLLALNNGQADAILAYGDILNEAK
                     LNLDKKAELLEAKDSNGLSGLFVALHNGCVETIIAYGKILHTADLTPHQASKLLAAEG
                     PNGVSGLIIAFQNRNFEAIKTYMEIIKNENITPEEIAEHLDKKNGSDFLEIMKNIKS"
     gene            11081..11200
                     /locus_tag="JN125_002889"
                     /pseudo
     CDS             11081..11200
                     /locus_tag="JN125_002889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001355812.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence hypothetical
                     protein"
BASE COUNT         3453 a         2416 c         2404 g         3011 t
ORIGIN      
        1 gatgtgctgt ttcagcctcg cgaccagctc acgctgtgtc agcgtttccg tcgccgttta
       61 tcccgttttg tggtccaggt aacggaagct caggctcgcc cctccgttgt aatgtgccag
      121 ccgggaggcc gctatcggcg gcttcttcag ataacgaccc aggtagcgcg ccgtattcct
      181 cccgccggcc gttttcttcg acatgtacat caggcgcgga actcatcggg gcgcgggaat
      241 gaaatcccat tcagactccg gatagattca agcaagccca cttatcgtca aaatcggtgt
      301 tgcaaaaacg ggagtgacca tagatccgtt ttccaagcgg accccataat atcggctggt
      361 aaacatcact cgctagtgca ttctttttgt tggtaatgat aattatttac atttattctt
      421 tgatgtttta tcataattaa tgttttatca ataaatatat ggaaatatat tgtttcagat
      481 gggaatatga gaaagttcat ccttatttct atgataacgt tagctagtgt tagtctggga
      541 gcctgcagac agaatgtcac cataaagcag gatgcgccag ggcagaaagc tttcctgatt
      601 gacgggcaga tttacgattt gcacagtggc aaaattattt ctagcagcga gcttttggcg
      661 gatcttgcta ccgctcgaca tcttattatt ggtgaaaaac acgataatgc cgagcatcat
      721 cagattgagc tttggcttat tcaaaatctg ctcatccagc gaccacaggg gagtgtgttg
      781 cttgagatgt tgacgtcaga ccaacagccc cgagttaacc aagttaaatg ttggctgaaa
      841 gataatcctg tggttcgaga tagccgtgtt caggaactac ttaactggca aaaagggtgg
      901 tcctgggaga tgtatggcga catcgtcatg cagctattac gtgggcctta cccgctgctc
      961 aatgccaaca ttggccggga gcagatgttg gcactgtaca aaaaaaacga atttcctaaa
     1021 ggaaaaaaat ccactgcacc tgtggtacaa gaagctctgc gtgaaaccat catagctatg
     1081 catgaaggca accttgaaag ccagcaactg acgtcaatgc tctctgttca gcagcagcgg
     1141 gatcgctaca tggcccgcca gcttctgagt gccccggtac cgtcgttgtt gattgcaggt
     1201 ggttatcacg cgtcaaaaag catgggcgta ccgttacaca tggaagatct tgccaccggc
     1261 acccatccag tggtgttgat gcttgcagaa aaaggaatga acatcacagt agatcatgct
     1321 gactacgtgt ggtttgtagc gccagataca acaaaaaggt aaaccatgga tgatgaatat
     1381 tctccacttc ccacagtcgg taaaatggag cagctggttt atctgttctc tactgcttca
     1441 tggactgatt ttccttacgt ttatctggcg tttttccgaa gttcagcccg ctatgtctcc
     1501 tgcaccggcg atcatgctgc aatgggcaga aattatagag gctccttctt ctccactttc
     1561 gcttccggtg ggaatcgctc aacaggagtc cgcagtgaca gaagaaaagc aacaaactga
     1621 ggacagacaa caacgtcctg tcactgaaga cagtgatgca accattgaaa taactaggaa
     1681 gaaaaagtca tccgatggag aaaagaaaaa gacacgtcca cctcgtaaga taaaggctca
     1741 aaccagcgac agcaacccca cagccgtttc cagtaatgct gcacctcagg ctctggtcga
     1801 atcgtcccgt attgctgcgc cttttaacag tgactcaaca aagcgagata attctgaggc
     1861 atcttgggaa agcagagtaa aaggccacct taaccgttat aaacgttacc ctggcgatgc
     1921 cagaaaacgt gcacgaaccg gcacagccgt tgtgactttt accgtaaaca cggaaggcac
     1981 tattgtcagt agtttcttgg aaatctcttc aggaaccctt tctcttgacc gcgaagctat
     2041 tgctgtttta gaacgcgctc aaccacttcc caaaccaccg cctgaaatat tggagggagg
     2101 attatttaaa gtaaaaatgc cgattacctt taagttgaag gagtaaaggg ataattggcc
     2161 gttcaagttc atttaactga aatttaattt tcatttttat gcttaacatt ttatcaaact
     2221 tttccactgt cgaaaaaatc aaaaagacag tagatcataa ttaataaaca aatagttata
     2281 cttatcttta ttaatattat atccaaggaa atttatgaac gttataaaac tggctatcgg
     2341 ctcaggcata ttattgctca gctgcggtgc ttactcacaa tccatcagtg aaaaaactaa
     2401 ttccgacaaa aaaggagcgg cagaattcag tccgctcagc gtttctgtcg ggaagacgac
     2461 cagtgagcag gaagctctcg agaaaacagg cgcgaccagt tcccggacaa cggacaaaaa
     2521 cctgcaatca cttgacgcaa cagtgcgtag tatgcctggt acttatactc aaatagatcc
     2581 tggtcaggga gcaatcagtg tgaatattcg aggcatgagc ggatttggtc gtgtaaacac
     2641 tatggtcgat ggtattaccc agagttttta cggaacctct acctccggaa caacggcgca
     2701 tggttcaact aacaatatgg ctggcgtact tatagatcct aacttactgg tagcagttga
     2761 tgttacacgc ggtgacagca gtggctctga agggatcaac gcccttgccg gtagtgcaaa
     2821 tatgcgtact attggcgttg acgatgtaat atttaacggt aatacatatg gccttcgttc
     2881 acgtttctct gtcggtagta atgggctggg acgcagcgga atgatcgccc ttggtggaaa
     2941 aagcgacgct tttacggata cgggaagcat tggcgttatg gctgctgtga gcggcagttc
     3001 tgtgtactct aatttctcaa atggttctgg aattaacagc aaagagtttg gttatgataa
     3061 atatatgaag cagaacccca aatcccaact gtataaaatg gatatcagac cagacgaatt
     3121 taacagcttc gaactttccg ctcgaaccta tgaaaataaa tttacacgtc gtgatataac
     3181 cagtgacgac tattacatta aatatcatta cacccctttt tctgaattaa ttgactttaa
     3241 cgtaacggcc agtaccagtc gcggtaatca aaagtatcgt gatggctcgc tgtatacttt
     3301 ctacaaaacc tcagcgcaaa atcgttctga cgcgctggat atcaacaata ccagccggtt
     3361 cactgtcgcg gacaatgaac tggagtttat gctgggcagc aaactgatgc gtacccgcta
     3421 tgaccggacc attcactcag cggcgggcga cccgaaagcg aaccaggaat cgatcgagaa
     3481 caatccgttc gcaccctccg gccagcagga tatttcagcg ctgtataccg ggctgaaggt
     3541 tacgcgcggc atctgggagg cagatttcaa tctcaactac acacgtaaca ggatcacagg
     3601 gtacaagccc gcctgcgatt cacgcgttat ctgcgtgcca cagggtagct acgatattga
     3661 cgataaagag ggtggcttca acccttcagt tcagctttct gctcaggtaa caccatggct
     3721 tcagccgttc attggctaca gcaaatccat gcgtgccccg aacatccagg agatgttctt
     3781 ctctaattca ggaggcgcat ccatgaaccc attcctgaag cctgaacgtg cagaaacctg
     3841 gcaggcgggt tttaacattg ataccagaga tttactggtc gaacaggatg ccctgcgctt
     3901 taaggctctg gcgtaccgca gcaggatcca gaactacatc tacagcgagt cttatctggt
     3961 ttgttctgga ggtcgtaaat gcagtatggc tgaggtgatt ggcaatgact gggagggcat
     4021 tagcgatgaa tacagcgaca atatgtacat ctacgttaac tcggcaagcg acgttattgc
     4081 aaagggcttc gaactggaga tggattatga tgcaggtttt gcttttggcc gactctcttt
     4141 cagccagcag caaacagacc agccaacctc catcgccagc acctactttg gcgcagggga
     4201 tatgaccgaa ctgcccagaa aatacatgac gctggatact ggtgttcgct tcttcgataa
     4261 cgcgttgacc ctgggcacta tcataaaata cacaggcaag gctcgtcgcc tgtcgcctga
     4321 ttttgagcag gacgaacata ccggcgcaat aatcaaacag gatttgccgc agatcccaac
     4381 gattatcgat ctctatggta cttacgagta caaccgcaac ctgacactga aactttcggt
     4441 acaaaacctg atgaacagag attattcgga ggcgctgaat aagctcaaca tgatgccagg
     4501 tcttggtgac gagagccacc cagccaattc cgcgcgtggc agaacatgga tatttggcgg
     4561 ggacattcgt ttctgatgac aatttccgcc aggttcagac aatacgtttt ctctcttatg
     4621 tcaattttat tgcaggaacg aaaaatgaat attttcactt tatccaaagc accgctatac
     4681 ttgttaattt cactattttt acccacgatg gccatggcta tcgatccacc tgaacgcgaa
     4741 ctttcgcgat ttgccctgaa aacgaattac cttcagtccc ctgatgaagg cgtctatgaa
     4801 ctggcgtttg ataatgccag taaaaaggtg tttgcagcag tcaccgatcg tgtaaatcgt
     4861 gaagccaata aaggctatct gtattcgttt aattcagatt cgctgaaagt cgaaaataaa
     4921 tacacgatgc cataccgggc attttcgctg gcgataaatc aggataaaca tcagctctat
     4981 atcggacaca cccagtcagc gtccctgcgt atcagtatgt ttgacacccc aaccggtaaa
     5041 ctggtaagaa ccagcgacag gttaagtttt aaagcggcaa acgctgcaga ttcgcgtttt
     5101 gagcatttgc gccatatggt ttacagccag gattccgata ccctgtttgt gagttatagc
     5161 aatatgctga aaacggccga gggcatgaag cctctgcata agctgttaat gctcgacggg
     5221 acgacgcttg ccttaaaagg cgaggttaag gatgcttaca aaggtacagc gtatggtctg
     5281 acgatggatg aaaaaacaca gaaaatctac gttggcggaa gagattacat caacgaaatt
     5341 gatgcgaaaa atcagacgct gctgcgtacc atcccgttga aagatccgag accacaaatc
     5401 acaagtgtgc agaatctggc ggtggactcc gcttctgacc gtgcctttgt ggtggtattc
     5461 gaccatgacg atcgttccgg tacaaaagat ggcctctata tttttgactt acgcgacggt
     5521 aaacagcttg gctatgtgca cacaggagcc ggagctaacg cggtgaaata caatccgaaa
     5581 tataacgaac tgtatgtcac caacttcact agcggcacca tcagcgtagt ggatgccacc
     5641 aaatacagca tcacccgtga atttaacatg ccggtctacc caaaccagat ggtgttgtcg
     5701 gacgatatgg atacccttta cattggcatc aaagaaggct ttaaccgcga ttgggatcct
     5761 gatgtgtttg tggaaggagc taaagaacgt attctgagca ttgatttgaa aaagtcgtga
     5821 tcgggggaaa aaacatggga taaaaactcc gttattccac taaactggcc ggactaggaa
     5881 aagcaaacat ctctgtcctg ccggtacgcc tgttacgccg ctccatgagg ctgaggaatc
     5941 tccagaaaac gagacaggca cagcattgta cgatcaactg atttgtgcca ataattcaat
     6001 gaaatcacag ctatgcctgt tcacgtatag gaaattgaaa aactaagcga taccactgtc
     6061 cgcgtcttat gcctcgtgcg gtaagctgtt tttcacatca cgccggtgtt tttttctttc
     6121 tgtggacggt tttaatactg taatcggccg ttttttatac ttaccccgat tcccgggcgc
     6181 acttatcctg catcaccccg ggatatacct cagcagactg atatcccgcg cgtttttctt
     6241 cagcccctcc acattcagtc ccgcgatggc ccggcggtat accatccggc cgccacacag
     6301 cacgcattcg aacgggtcac gactcaggaa ctgtttcacc atttgtgcat agcacacttt
     6361 cgccactggt tccggtttat cctgttttta taacggtaat tgcagaccat gacaaaccgc
     6421 agccgtcagg ctgcctactc gagtcacaaa gctctctgtg tccgatatgc cggcagcgca
     6481 ttacccatga aactggctgg aacgtacacc ataaggtgaa gaaagttatg gggggcggtg
     6541 aagaattatc taaccttgtc ttgttacatc caaattgcca tcgacagtta cacagttgtg
     6601 aagccggctc tctcaaaaag ggcttataaa ggcttgagcg gtgtaccggg aaaccggtat
     6661 gcaccgttct taggggaggg cagtccagca atgaactgtc cttacccgac aaacatccaa
     6721 aacgaacgga acgtgctgga atccgcatat aacccgttgt aaagtgagga aatggacacc
     6781 tcacttgctc atgagaacgc ccgcctgcgg gcactgttgc agacgcaaca ggacactatc
     6841 caccagatgg ctgaatacaa ccgcctgctc tcacagcgga tggcggctta tgcttccgaa
     6901 atcaaccgac tgaaggcgct ggttgcgaaa ctgcagcgta tgcagttcgg taaaagctca
     6961 gaaaaacttc gcgcaaaaac cgaacggcag attccatttt cacgggcgat ctacgccaca
     7021 caggctctgg gttgcagtga ctgctccatt aaggcgattt tgaactcata agggaagtaa
     7081 caaaaaaact gcaaaagtac aataattata tatggccaaa ctaacctcta ttaaaaaaac
     7141 atcagttttt cacacttagt tgagcttcat gaaaaaatca tcgaggattt cattgcagaa
     7201 tacacattct actaactgga agcactccat aagaggaatc agagaaagta tcgttttttt
     7261 atagtaaaat tcattgctgt tcaataaaat tgatatagtt attaaattat gaaaataatt
     7321 tcacaaaaaa gattaacttg agttcttaag catcggattt tagatatttt gaaatatctg
     7381 gcatcacata acatcaaaag tatataatac ccttatctaa ttacatgcag tatattgtat
     7441 atatactcaa aaattgtaat tcatacccta ctatatcttg tggggaaaga tattaattaa
     7501 aactgttttc atataaggtt cattttatga atatatcaga aacactgaac tcagcaaata
     7561 cccaatgcaa tatagattct atggataaca gattacatac attatttcca aaagtgacat
     7621 cagtgcgaaa cgctgcacaa caaactatgc cagatgaaaa aaatttaaaa gatagtgcaa
     7681 atattattaa agatttcttt aggaaaacta tagcagcaca gagttatagt agaatgttct
     7741 ctcaaggctc taactttaaa tctttaaata tagcaattga tgcaccatca gacgctaaag
     7801 cctcatttaa ggctattgag caccttgaca gattatcgaa gcattatata tctgaaataa
     7861 gggaaaaact tcatcctctt tctgcagagg aactcaattt gctttcgcta attattaatt
     7921 ctgatttaat cttcagacat caaagtaatt ctgatttgtc tgataaaatt ttaaacatta
     7981 agtcattcaa taaaattcag tctgaaggaa tatgcacaaa acgaaacaca tacgctgatg
     8041 atataaaaaa aatagctaat catgactttg tgttttttgg cgttgaaatc tctagccatc
     8101 agaaaaaaca ccccctgaat acaaaacatc acactgttga ttttggtgca aatgcgtata
     8161 tcattgatca tgactctcca tatggatata tgacattaac cgatcacttt gataatgcta
     8221 ttccacctgt tttttaccat gagcaccaat catttttaga taaattttca gaggttaata
     8281 aagaagttag tcgatacgta catggaagta aaggaattat agatgtacca atattcaata
     8341 ctaaagatat gaagttaggg ctcggattat acctgattga ctttattaga aaaagtgaag
     8401 accaaagctt caaggagttt tgctatggaa aaaatcttgc ccctgtggat ctggatagaa
     8461 tcataaactt tgtttttcag ccagagtacc atatacctag gatggtaagt acagaaaact
     8521 tcaaaaaagt taagattaga gaaatatcct tagaggaggc tgttacagca tctaattacg
     8581 aagaaattaa caagcaggtc actaacaaaa aaattgctct ccagactctt tttctttcga
     8641 ttactaatca aaaagaggat gtcgccttat atatattatc taattttgag ataactagac
     8701 aagatgttat ttccataaag catgagttgt atgatattga gtatctactt agcgctcata
     8761 attcaagctg taaagtactt gagtatttta tcaataaggg attggttgat gtaaacacaa
     8821 agttcaaaaa aactaatagt ggggattgta tgttggataa cgcaataaaa tatgagaatg
     8881 cagaaatgat aaaactatta ttgaaatatg gtgcaacatc tgacaataaa tatatttaat
     8941 caaaattgaa tatcgtttag caaaaggcag tatttgcaca aaatatcgat atattgttta
     9001 ttgtcagtat ggctcaatgt gataatagtt ggaaagtttg atgggtttcg ccccgttgta
     9061 gcggtagtcg agctggaagg tcttcaggca ctgcttacag cgatagagca gcccccctga
     9121 actggaatgg ccgttccgga taccccctga gtttcagagt aacggggaca aaccacatca
     9181 atctttgcca tcaatcatcc aaagggcaaa gagtacaaca acactaagtc tgcgtcacaa
     9241 cccatcaatg aaaggaatat atacatatgc catcagtaaa tttaatccca tcaaggaaaa
     9301 tatgtttgca aaatatgata aataaagaca acgtctctgt tgagacaatc cagtctctat
     9361 tgcactcaaa acaattgcca tatttttctg acaagaggag ttttttatta aatctaaatt
     9421 gccaagttac cgatcactct ggaagactta ttgtctgtcg acatttagct tcctactgga
     9481 tagcacagtt taacaaaagt agtggtcacg tggattatca tcactttgct tttccggatg
     9541 aaattaaaaa ttatgtttca gtgagtgaag aagaaaaggc tattaatgtg cctgctatta
     9601 tttattttgt tgaaaacggt tcatggggag atattatttt ttatattttc aatgaaatga
     9661 tttttcattc cgaaaaaagc agagcactag aaataagtac atcaaatcac aatatggcat
     9721 taggcttgaa gattaaagaa actaaaaatg ggggggattt tgtcattcag ctttatgatc
     9781 ccaaccatac agcaactcat ttacgagcag agtttaacaa atttaactta gctaaaataa
     9841 aaaaactgac tgtagataat tttcttgatg aaaaacatca gaaatgttat ggtcttatat
     9901 ccgacggtat gtctatattt gtggacagac atactccaac aagcatgtcc tccataatca
     9961 gatggcctaa taatttactt caccccaaag ttatttatca cgcgatgcgt atgggattga
    10021 ctgagctaat ccaaaaagta acaagagtcg tacaactatc tgacctttca gacaatacgt
    10081 tagaattact tttggcagcc aaaaatgacg atggtttgtc aggattgctt ttagctttac
    10141 aaaatgggca ttcagataca atcttagcat acggagaact cctggaaact tctggactta
    10201 accttgataa aacggtagaa ctactaactg cggaaggaat gggaggacga atatcgggtt
    10261 tatcccaagc acttcaaaat gggcatgcag aaactatcaa aacatacgga aggcttctca
    10321 agaagagagc aataaatatc gaatacaata agctgaaaaa tttgctgacc gcttattatt
    10381 atgatgaagt acacagacag atacccggac taatgtttgc tcttcaaaat ggacatgcag
    10441 atgctatacg cgcatacggt gagctcattc ttagcccccc tctcctcaac tcagaggata
    10501 ttgtaaattt gctggcctca aggagatatg acaatgttcc cggacttctg ttagcattga
    10561 ataatggaca ggctgatgca atcttagctt atggtgatat cttgaatgag gcaaaactta
    10621 acttggataa aaaagcagag ctgttagaag cgaaagattc taatggttta tctggattgt
    10681 ttgtagcctt gcataatgga tgtgtagaaa caattattgc ttatgggaaa atacttcaca
    10741 ctgcagacct tactccacat caggcatcaa aattactggc agcagaaggc ccaaatgggg
    10801 tatctggatt aattatagct tttcaaaata ggaattttga ggcaataaaa acttatatgg
    10861 aaataataaa aaatgaaaat attacacctg aagaaatagc agaacacttg gacaaaaaaa
    10921 atggaagtga ttttctagaa attatgaaga atataaaaag ctgaatatta tctcgtggtg
    10981 atacactgaa tttgaggtaa ccggctcatt taaaccgtct ggtctgtttc ctccggctcc
    11041 acaaaaataa tgtccatcat tttgaagtgg acactatcgt atggaatacc ggacctggat
    11101 cactgaagct ttacgccttc atttcgaaga acatttacca cgggttgtgg ccggacgtcg
    11161 cctgggcgta ccaaaatcaa ctgtctgtgg tatgttcgtg tgaaccaccc ccggtatccc
    11221 gctcatgctg gcgaacccag acacgcagtg aaccgccccg ggtttcctgg agagtgtttt
    11281 atct
//
LOCUS       DADMHM010000128        11265 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.129, whole genome shotgun sequence.
ACCESSION   DADMHM010000128 DADMHM010000000
VERSION     DADMHM010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11265)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11265)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11265
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.129"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..77)
                     /locus_tag="JN125_002890"
     CDS             complement(<1..77)
                     /locus_tag="JN125_002890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HAY8872599.1"
                     /translation="MQDIREERLNESVKSEQSPRVVLWE"
     gene            complement(77..406)
                     /locus_tag="JN125_002891"
     CDS             complement(77..406)
                     /locus_tag="JN125_002891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY8872600.1"
                     /translation="MKTFRWKVKPDMEVNSRPSVREVRFGDGYSQRMAAGLSADLKTY
                     RVTLSVTREEARHLEEFLAEHGGWKAFLWTPPYAYRQIKVTCAGWSARVGMLRVEFSA
                     EFKQVVN"
     gene            complement(403..3015)
                     /locus_tag="JN125_002892"
     CDS             complement(403..3015)
                     /locus_tag="JN125_002892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HAY8872601.1"
                     /translation="MSQPAGDLVIDLSLDAARFDEQMARVRRHFSSLEADARKTASTV
                     EQGLSRQALAAQKAGISVGQYKAAMRTLPAQFTDIVTQLAGGQNPFLIMLQQGGQISD
                     SFGEPLSLLTLLKEELLGIRDASESSEESLSDTANALAENARNAGELGRFMSVVRVAA
                     GGGVAVLAALAAAAWQAEQADRALLRSLILTGGAAATTTAELWKMAGVISDEAGGGIR
                     QAAENLARLAESGKYTAGQLRIMGETSQRWLQTVGDDAGKVEKAFEGIAADPVKALAS
                     LNQQYNFLSVSQLRHIDELERTKGKQAAVTEAMSLFADVMNARLEQLDKAATPVEKIW
                     DDVKTWTSDAWAWIGDHTLGALSLITDVVAGTVEQVKLLLVQGDLALAEFIQSAWETT
                     KNVPGVGALFGELAEENRVFIEKTKRDELALRKSIAERDARIRQGEMGYINRSRATGV
                     SKGLGQQEAVSRLAEELTGKKHTSPKTRSAGEREEEQAREALLALEAELRTLEKHSGA
                     NEKISRQRRDLWKAESQYAVLKEAATKRQLSWQEKSLLAHEKETLEYKRQLAELGDKI
                     EHQKRLNELAQQAARFEQQQSAKQAAISAKARGLTDRQAQRESEEQRLREVYGDNPAA
                     LAKATSALKNTWSAEEQLRGSWMAGMKSGWGEWAESATDSFSQVKSVATQTFDGIAQN
                     MAAMLTGSEQNWRGFTRSVLSMLTEIFLKQAMVGIVGRIGSAIGGAFGGGASASTGTA
                     IQAAAANFHFATGGFTGTGGKYEPAGIVHRGEFVFTKEATSRIGVGNLYRLMRGYAEG
                     GYVGGAGSPAQMRRAEGINFNQNNHVVIQNDGPNGQAGPQLMKAVYEMARKGAQDELR
                     LQLRDGGLLSGSGR"
     gene            complement(2996..3409)
                     /locus_tag="JN125_002893"
     CDS             complement(2996..3409)
                     /locus_tag="JN125_002893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly protein T"
                     /protein_id="HAY8872602.1"
                     /translation="MGRPDWRAMLAGMTSTEYADWRRFYCTHYFQDTQLDAHFSGLMY
                     AVLSLFFGDPDMHPADFSLLAPACEEEQTEMPDEEEMLMQKATGVAGGVRFGGDGGRD
                     ISPSANVVDVSEDDVALMMASAGISGGVRYVPASG"
     gene            complement(3432..3827)
                     /locus_tag="JN125_002894"
                     /pseudo
     CDS             complement(3432..3827)
                     /locus_tag="JN125_002894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310195.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein G"
     gene            complement(3841..4593)
                     /locus_tag="JN125_002895"
     CDS             complement(3841..4593)
                     /locus_tag="JN125_002895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY8872603.1"
                     /translation="MATPNPLEPVKGAGTTLWVYNGKGDAYANPLSDDDWQRLAKVKD
                     LTPGEMTAESYDDNYLDDEDADWNATGQGQKSAGDTSFTLAWKPGEEGQKGLIGWFES
                     GDVRAYKIRFPNGTVDVFRGWVSSIGKAVTAKEVITRTVKVTNVGKPSVAEERSKITP
                     VSAIKVTPTSGTVAKGKTTTLTVSFEPESATDKTFRAVSADPSKATISVKDMTITVNG
                     VATGKVQILVVSGNGQFAAVAEVTVTEAGAAG"
     gene            complement(4601..4996)
                     /locus_tag="JN125_002896"
     CDS             complement(4601..4996)
                     /locus_tag="JN125_002896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY8872604.1"
                     /translation="MKHTDIRAAVLDALEQHEHGATLFDGRPVVFDEEDFPAIAVYLT
                     DAEYTGEELDADTWRATLHIEVFLPAQVPDSELDQWMESRIYPAMTAIPALAGLITTM
                     VTQGYEYRRDDDMALWSSADLTYSITYEM"
     gene            complement(4993..5568)
                     /locus_tag="JN125_002897"
     CDS             complement(4993..5568)
                     /locus_tag="JN125_002897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY8872605.1"
                     /translation="MAIKGLDQAIDNLSRVRKNAIPAASAMTINRVATTAINQSSSQV
                     ARETRVRRKLVKERSRLKRATVRNPNARIIVNRGDLPVIKLGIRMLGRRPNSILKAGQ
                     HRYQRAFIQRLNNGRWHVMQRLPQARYEEGNDDKGRKKRNRLPIQVVKIPMAAPLKQA
                     FDENVDRIRRERLPKELAYALKQQLRIAIKR"
     gene            complement(5584..5937)
                     /locus_tag="JN125_002898"
     CDS             complement(5584..5937)
                     /locus_tag="JN125_002898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001204533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY8872606.1"
                     /translation="MRDFQNAFDAALAGVDSTIVEVMGLCAQFTSGAQRGSEVQGVFD
                     DPESLGFAGGGVRIEGSSPSLFVRTDTVRAVRRGDTLTINGEMFWVDRISPDDGGSCY
                     LWLNRGQPPAVNRRR"
     gene            complement(5930..6313)
                     /locus_tag="JN125_002899"
     CDS             complement(5930..6313)
                     /locus_tag="JN125_002899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001373367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-packaging protein FI"
                     /protein_id="HAY8872607.1"
                     /translation="MATKEENLNRLRQLAGLLGREADMSGSAADIAQRVSEWEEELAV
                     SPEGIMHSDESGADQNHTDDGEQLNNTDATDDVKAVRVRKCLHVMGYCPETGRPVELT
                     YRGMRVMVPSPLATAMIQHGTAEHA"
     gene            complement(6365..7393)
                     /locus_tag="JN125_002900"
     CDS             complement(6365..7393)
                     /locus_tag="JN125_002900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major capsid protein"
                     /protein_id="HAY8872608.1"
                     /translation="MGLFTTRQLLGYTEQKVKFRALFLELFFRRTVNFHTEEVMLDKI
                     TGKTPVAAYVSPIVEGKVLRHRGGETRVLRPGYVKPKHEFNYQQAVERLPGEDPAQLN
                     DPAYRRLRIITDNLKQEEHAIVQVEEMQAVNAVLYGKYTMEGDQFDTVEVDFGRSEGN
                     NIEQADGKKWSEQDRDTFDPTHDIDLYCDQASGLVNIAIMDGTVWRLLNGFKLFREKL
                     DTRRGSNSQLETAVKDLGAVVSFKGYYGDLAIVVAKTSYVAEDGTEKRYLPEGTLVLG
                     NTAAEGIRCYGAIQDAQALSEGVVASSRYPKHWLTVGDPAREFTMTQSAPLMVLPDPD
                     EFVVVQVK"
     gene            complement(7451..7798)
                     /locus_tag="JN125_002901"
     CDS             complement(7451..7798)
                     /locus_tag="JN125_002901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head decoration protein"
                     /protein_id="HAY8872609.1"
                     /translation="MVTKTITEQRAEVRIFAGNDPAHTATGSSGISSATPALTPLMLD
                     EATGKLVVWDGQKAGSAVGILVLPLEGTETVLTYYKSGTFATEAIRWPDSGDEHKKAN
                     AFAGTALSHAALP"
     gene            complement(7835..9340)
                     /locus_tag="JN125_002902"
     CDS             complement(7835..9340)
                     /locus_tag="JN125_002902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S49 family peptidase"
                     /protein_id="HAY8872610.1"
                     /translation="MRRNLSHIIAAAFNEPLLLEPAYARVFFCALGREMGTASLSVPQ
                     QQVQLDAPGMLAETDEYMAGGKRPARVYRVVNGIAVLPVTGTLVHRLGGMRPFSGMTG
                     YDGIVTCLQQAMADSQVRGILLDIDSPGGQAAGVFDCADMIYRLRQQKPVWALCNDTA
                     CSAAMLLASACSRRLVTQTSRIGSIGVMMSHVSYAGHLAQAGVDITLIYSGAHKVDGN
                     QFEALPAEVRQDMQQRIDAARRMFAEKVAMFTGLSVDAVTGTEAAVFEGQSGIEAGLA
                     DELINASDAISVMATALNSNVRGGTMPQLTATEAAVQENQRVMGILTCQEAKGREQLA
                     TMLAGQQGMSVEQARAILAAAAPQQPVASAQSEADRIMACEEANGREQLAATLAAMPE
                     MTVEKARPILAAAPLADAGPSLRDQIMALDEAKGAEAQAEKLAACPGMTVENARAVLA
                     AGSGKAEPVSASTTALFEHFMANHSPAAVRGGVSQTSADGDADVKMLMAMP"
     gene            complement(9330..10112)
                     /locus_tag="JN125_002903"
                     /pseudo
     CDS             complement(9330..10112)
                     /locus_tag="JN125_002903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000831749.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
     gene            complement(10906..11187)
                     /locus_tag="JN125_002904"
     CDS             complement(10906..11187)
                     /locus_tag="JN125_002904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872611.1"
                     /translation="MTESEILRLIRRACGISKQHDEQATQPDSVTADNYVRVVAEVMR
                     RDGIELNGVDMRNIRTRVLELLAYRRRSQQRRESAKNTYQWKKPERLRR"
BASE COUNT         2364 a         3566 c         2652 g         2683 t
ORIGIN      
        1 atttcccaga gtaccacccg cggtgactgc tctgacttaa ccgactcgtt cagcctttct
       61 tcgcgaatat cctgcatcag ttcaccacct gcttaaactc cgcgctgaac tcaacgcgca
      121 acatcccgac ccgcgcagac cacccggcac aggtcacctt tatctgccgg tatgcataag
      181 gcggtgtcca cagaaacgcc ttccagccac cgtgctctgc caggaattcc tccagatgcc
      241 gggcttcctc ccgggtcacg gaaagcgtca cccggtatgt tttcaggtca gcactcagcc
      301 ctgccgccat acgctgcgaa tagccgtcac caaaacgcac ttcacgcacc gatggccgcg
      361 agttcacctc catatccggt ttcactttcc agcgaaaggt tttcatcgcc cgctccccga
      421 taacagaccg ccatcacgca actgcagccg gagctcatcc tgcgcacctt tacgggccat
      481 ctcatacacc gctttcatca gctgcggccc tgcctgcccg ttggggccgt cgttctgaat
      541 caccacgtga ttgttctgat taaaattaat gccttcggcc cgccgcatct gcgccggact
      601 tccggcaccg ccgacataac caccttccgc atacccgcgc atcagacgat acaggttgcc
      661 gacaccaatc cggctggtcg cctccttcgt gaagacaaac tccccgcgat ggacaatccc
      721 cgcaggctca tatttgccgc ccgtccccgt aaatcctccg gtcgcgaaat ggaagttcgc
      781 cgccgcagcc tgaatggccg tccccgtgga agcggatgcg ccaccaccga aagcaccacc
      841 aatggcgctg ccgatacgcc cgacaatccc caccatcgcc tgcttcagaa aaatctctgt
      901 cagcatggag agcacggaac gggtgaaacc acgccagttc tgttcgctgc cggtcagcat
      961 cgccgccata ttctgtgcaa taccgtcaaa ggtctgcgtg gccacacttt ttacctgcga
     1021 aaaactgtcc gtcgcacttt ccgcccactc gccccagccg gacttcatcc cggccatcca
     1081 gcttccacga agctgctcct ccgcagacca ggtgttcttc agtgcagatg tggccttcgc
     1141 cagcgcagcc ggattatcac cgtacacctc acgaaggcgc tgctcttccg actcccgctg
     1201 cgcctgacgg tcggtgagtc cgcgggcttt tgcgctgatt gccgcctgct tcgcgctctg
     1261 ctgctgttca aaccgcgccg cctgctgtgc cagctcattc agccgcttct ggtgttcaat
     1321 cttgtctccc agctcagcca gctggcgttt gtactccagc gtctctttct catgagccag
     1381 cagggatttt tcctgccagg ataactgccg tttcgtggca gcctctttca ggaccgcata
     1441 ctgactttcc gccttccata aatcacggcg ctgccggctg attttctcat tcgcaccgct
     1501 gtgtttttcc agcgtcctga gctcagcttc aagggcaagc agagcctctc ttgcctgctc
     1561 ctcttccctc tccccggcag agcgcgtttt cggtgatgta tgctttttac ctgtcagctc
     1621 ttcagccaga cggctgacgg cttcctgctg cccaagacct ttgctgacgc ctgttgcacg
     1681 cgagcggttg atgtacccca tttccccctg gcgtatacgc gcatcccgtt ccgcaatgga
     1741 ttttctcagc gccagttcat cgcgttttgt tttctcaata aatacgcggt tctcttctgc
     1801 cagttcacca aacaacgcac caacgccggg cacattcttt gtcgtttccc aggctgactg
     1861 aataaattca gccagcgcca gatccccctg cacaagcagc agcttcacct gttcaacggt
     1921 tccggccacc acgtcagtga tcagactgag tgcccccagt gtatgatcac ctatccatgc
     1981 ccatgcgtca gaagtccagg ttttaacatc gtcccagatt ttttccaccg gcgtggccgc
     2041 tttatcaagt tgctccagac gtgcattcat gacatccgca aacagggaca tcgcctccgt
     2101 caccgcagcc tgtttacctt tcgtgcgctc aagctcatca atatggcgta actgggaaac
     2161 gctcaggaag ttatactgct gattcaggga ggccagcgcc ttcaccggat ctgctgcaat
     2221 cccttcaaag gctttttcca ccttcccggc atcgtccccc accgtctgca gccatctctg
     2281 agaggtttcc cccatgatcc gtagctgccc ggcggtatat ttcccgcttt ctgccagacg
     2341 ggccagattt tctgccgcct gtctgatacc accaccggct tcatcgctga tcaccccggc
     2401 cattttccac aattctgccg ttgtggtggc agccgcccct ccggtcagga tcagtgaacg
     2461 caataaggcc cggtcagcct gctctgcctg ccaggcggcg gcagcaagcg cggccagtac
     2521 ggcaaccccg ccacctgccg ccacacggac caccgacata aatcgtccca gctcaccggc
     2581 attccgggca ttttcagcca gtgcatttgc cgtatctgac agcgactcct ctgatgattc
     2641 agaggcatcc ctgatcccga gaagttcctc cttcagcagg gtaagcaggc tgagcggttc
     2701 accgaatgaa tcgctgatct gccccccctg ctgcagcatg ataaggaagg gattctgacc
     2761 accggcaagc tgagtgacaa tatccgtgaa ctgtgcgggc agtgtgcgca tggcagcctt
     2821 atactgtccg actgatatcc cggctttttg tgcagccagc gcctgtcggc tcagcccctg
     2881 ttcaacagta ctggcggttt ttctggcatc cgcctccaga ctggaaaaat gacggcgtac
     2941 ccgggccatc tgttcatcaa accgggccgc atccagactc aaatcaataa ccagatcacc
     3001 cgctggctgg gacatatctc acacctccgg aaatccccgc tgaagccatc attaatgcaa
     3061 catcatcctc gctgacatcc accacattcg cagaaggtga aatatcgcgc cctccgtccc
     3121 ctccgaaccg gacgcctccg gcaactcctg tcgctttctg catcagcatt tcttcctcgt
     3181 ccggcatctc cgtctgctct tcctcacacg ctggagcaag cagactgaaa tccgccggat
     3241 gcatatccgg atcgccaaaa aacaggctga gtacggcgta catcagcccg gaaaaatgag
     3301 cgtccagttg ggtatcctga aaataatgcg tgcagtaaaa acgtcgccag tcggcatatt
     3361 cggtggatgt catcccggca agcatggcgc gccagtcggg tctccccatc tctcgcgcca
     3421 gtttcaggac aagttaccgg ctcagtcgct tctgctttcc cggtttgttc aggatcggca
     3481 tcgtgccggt tatccagcat acctgaaaga taaagcaccc ggttcgttgc ctgattcagt
     3541 gcatcagcag gccatcccag catcacttca cggcggatct gctgcatctc tgtctccgga
     3601 gaggccagag tgcctttgag ggaatgggta tgccatagcg acatcgccac aagcagggat
     3661 gccgtttcca gatatcgctg gttaatgtgc acgacatcat gcttcgttgt ctcctgttgt
     3721 tctgcgtctg aaacaaactt tatataatca aaccgctgca gcgcagacaa ttcggaaagc
     3781 gtgacagaca caccgttata ttcaaattgt tctgttttca gaaacatgta ttacctccgt
     3841 ttaccctgca gcgcccgctt cagtaacggt gacttcagcc actgcggcga actgaccatt
     3901 tccgctcacc acaaggatct gcaccttacc tgtcgccacg ccgtttaccg taattgtcat
     3961 atctttcaca ctaatggtgg ctttcgacgg atcggcggaa accgctctga acgtcttgtc
     4021 ggttgcactt tccggctcaa aagaaaccgt cagggtggtt gttttccctt ttgccaccgt
     4081 accggatgtc ggcgtcacct taatcgcact gaccggcgta attttgctgc gttcttccgc
     4141 tacagaaggt ttacccacgt tagtgacttt caccgtgcgg gtgatcactt ctttcgccgt
     4201 cacggcctta ccgatactgc tgacccagcc acgaaacaca tccaccgtgc cattcggaaa
     4261 acggatttta taggcccgga catcgccgct ttcaaaccag cctataagcc ctttctggcc
     4321 ttcctctccc ggtttccagg ccagcgtaaa gctggtatca cctgcagatt tctgcccctg
     4381 cccggtcgcg ttccagtccg cgtcttcatc atccaggtag ttatcatcgt aggattctgc
     4441 cgtcatctcg cccggcgtca gatccttcac cttagccagt cgctgccagt catcgtctga
     4501 caacgggttt gcataagcat cacccttgcc gttgtaaacc cacagagtgg taccggcacc
     4561 ttttaccggc tcaaggggat ttggtgttgc catatcgtcc tcacatctcg tatgtaatgg
     4621 aataagtcag atctgcagaa ctccataacg ccatatcgtc atcacgacga tactcatagc
     4681 cctgcgtaac catcgtggta atcagtcctg ccagtgccgg gatcgcagtc atcgccgggt
     4741 aaatccggct ttccatccac tgatcaagct ctgaatccgg tacctgtgcc ggtaaaaaca
     4801 cctcaatatg cagcgtggcc cgccaggtat ctgcatccag ctcttcaccg gtatactctg
     4861 catccgtcag ataaaccgcg atcgcaggaa aatcctcttc gtcaaaaaca acggggcgac
     4921 catcaaacag cgtcgccccg tgttcatgct gctcgagtgc atccagcact gcggcacgaa
     4981 tgtcagtgtg tttcatcgtt ttatcgcaat cctcagttgt tgtttcagcg cgtatgccag
     5041 ttctttaggc aggcgttcac gccggatacg gtcaacattc tcatcaaatg cctgtttcag
     5101 tggggccgcc atcgggattt tcaccacctg aatgggaagg cgattacgct ttttccttcc
     5161 cttgtcgtca ttgccctcct catatctggc ctggggaaga cgttgcataa catgccagcg
     5221 cccattattt aatcgctgga taaatgcccg ctgataacga tgctgaccgg ctttgagtat
     5281 gctgttcgga cgacgtccca gcattctgat ccccaactta atcacaggga gatcaccgcg
     5341 gttaacgata attctggcat tcggatttct gaccgtcgcc cgtttcagtc tggaccgttc
     5401 ctttaccagt ttccgtctca ccctggtttc ccgggcaacc tgtgacgaag actgattaat
     5461 cgccgttgtg gccacgcggt taatcgtcat tgctgaagcc gccggaatgg cgtttttacg
     5521 aacccggctc agattatcaa tcgcctgatc aagccctttt atcgccataa tttcaccctg
     5581 cgtttatcgt cgccggttaa cagcgggtgg ttgcccacgg ttgagccaga gataacagct
     5641 tcccccgtca tccggagaaa tacgatccac ccagaacatc tcgccgttaa tggtcagcgt
     5701 gtcaccacgc cgcacggcac gcaccgtatc cgtccgcaca aataatgacg ggctgcttcc
     5761 ttcaatacgg accccgccac cggcaaaacc cagcgactcc ggatcgtcaa aaaccccctg
     5821 aacttcgctt ccacgctgtg ctcccgaggt gaactgcgca cagagcccca tcacttcaac
     5881 aatcgtgctg tccaccccgg caagggcagc atcaaaggca ttctgaaaat cacgcatgct
     5941 cagccgttcc gtgctgtatc atggctgtcg ccagtggtga tggcaccata acacgcatgc
     6001 cccggtacgt cagttcaacg ggacggcctg tctccgggca ataccccatc acatgcaggc
     6061 atttccgcac acggaccgct ttaacatcat ccgtagcatc cgtgttgttc aactgctcac
     6121 catcgtctgt gtgattttga tcagccccgc tctcatcaga gtgcataatg ccctccgggg
     6181 aaacagcaag ctcctcttcc cactcagaca cacgttgagc aatatccgca gcactccccg
     6241 acatatccgc ctcgcgcccc agcaggccag ccagttgacg aagacgattc agattttctt
     6301 cttttgttgc catctcagcc tcctgtgaaa aaagacacgg gggcatttcg cccccgctca
     6361 cggattattt cacctgtacc accacaaact catccggatc cggcagcacc atcagcggtg
     6421 cggactgcgt catggtgaat tcacgggccg gatcgcccac agtcagccag tgtttcggat
     6481 aacgggaaga ggccaccaca ccttcggaca acgcctgcgc atcctgaatg gcaccatagc
     6541 aacgaatgcc ctctgctgcc gtattcccca ggaccagtgt gccctccggc agataacgtt
     6601 tttcggtacc gtcctctgcc acataagacg ttttcgccac cacaatggcc agatcgccgt
     6661 aatacccctt gaaggacacc accgccccca ggtctttcac tgccgtttcg agttgtgaat
     6721 ttgagccgcg acgggtatcc agtttttcgc ggaacagctt aaagccattc agcagacgcc
     6781 agaccgtacc gtccataatg gcgatattca caaggccgct ggcctgatcg cagtagaggt
     6841 caatatcatg cgtcggatca aacgtatcac ggtcctgctc agaccatttt ttaccgtcag
     6901 cctgctcaat gttatttcct tcagagcgcc cgaaatccac ctcgacagta tcaaactgat
     6961 ccccttccat ggtgtatttg ccatacagca cggcattcac cgcctgcatt tcttccacct
     7021 ggacaatggc gtgctcttcc tgtttgaggt tatcggtaat gatacgcaga cgacggtagg
     7081 ccgggtcgtt cagctgagcc ggatcttcac caggaaggcg ctcaaccgcc tgctggtaat
     7141 taaattcgtg tttgggcttg acgtagcccg gacgtaacac gcgggtttca ccaccgcgat
     7201 ggcgaagcac ttttccttca acgatcgggg agacataggc cgccaccggc gtttttccgg
     7261 taattttgtc cagcatcacc tcttcggtgt ggaaattcac cgtacggcgg aaaaacagct
     7321 ccagaaacag cgcacggaat ttcacttttt gttcggtata accgagtaac tggcgggtcg
     7381 taaacaatcc cataaatcag ttcctttcat taagaaatca gtcaggccaa cgcggtggcc
     7441 tgataacgtg ttacggcagc gccgcgtgac tcagggctgt gccggcaaag gcatttgcct
     7501 ttttgtgttc atccccactg tcaggccagc ggattgcctc cgtcgcaaag gtccccgact
     7561 tgtaataggt cagcaccgtc tctgtgcctt caagcggcag taccagtatg ccaaccgcac
     7621 taccggcttt ctgtccatcc cagaccacca gtttcccggt ggcttcatcc agcatcaggg
     7681 gcgtcagagc cggtgttgcc gaggaaatcc cgctgctgcc tgtggcggtg tgagccggat
     7741 cattaccggc aaaaatacgt acttccgcac gctgttcagt gatggttttc gtcaccattt
     7801 tgttaaaacc tcatattgat ggtcagcact gacttcatgg catggccatg agcattttca
     7861 cgtccgcatc accgtctgct gacgtctgtg acacgccacc ccgcaccgct gccggtgaat
     7921 gattcgccat gaaatgttca aacagggcgg ttgtggatgc agagaccggt tcggccttac
     7981 ctgatcccgc agccagcaca gcccgggcgt tctccacggt cattcccggg caggccgcca
     8041 gtttttcagc ctgcgcttct gccccttttg cctcatccag ggccatgatc tgatcacgaa
     8101 gtgagggccc ggcatccgcc agtggtgcag ccgccaggat cgggcgggct ttttccaccg
     8161 tcatctccgg catcgccgcc agcgttgccg ccagttgttc acgaccgttc gcttcttcac
     8221 acgccataat gcgatcggct tcactctgcg cggatgccac cggctgctgc ggtgccgccg
     8281 cggccagaat cgcccgggcc tgttcaacgc tcatgccctg ttgccctgcc agcatcgtgg
     8341 caagctgttc acgtcctttc gcttcctggc atgtcaggat ccccatcact cgctggttct
     8401 cctgcacggc ggcttccgtt gcagttaatt gcggcatagt gcctcctctg acattactgt
     8461 tcagcgccgt ggccatcaca ctgatggcat ccgacgcatt gattaattca tccgccagcc
     8521 cggcctcaat gccggactga ccttcaaaaa cagcggcctc tgttcccgtg actgcatcaa
     8581 cagacagacc ggtaaacatc gccacttttt cggcaaacat ccggcgcgcc gcatcaatcc
     8641 gctgctgcat gtcctggcga acctctgccg gcaacgcttc aaactgattg ccatccacct
     8701 tgtgcgcccc tgagtaaatc agcgtgatat ccacaccggc ctgcgccaga tgaccggcat
     8761 agctgacatg gctcatcatc acgccaatgg aaccgatacg ggatgtctgg gtaaccagcc
     8821 gtcgggagca ggccgacgcc agcagcatgg ccgcagaaca ggccgtgtca ttacacagtg
     8881 cccagaccgg cttctgctgc cggaggcggt aaatcatgtc agcgcagtca aacacgccgg
     8941 cggcctgccc gcccggactg tcaatgtcca gcagtatgcc ccgcacctgg ctatctgcca
     9001 ttgcctgctg aagacaggtg acaatgccgt catagccagt cattccggaa aatggccgca
     9061 tcccccccag ccggtgcacc agcgtgccgg tcaccggcag taccgcaata ccgttcacca
     9121 cccggtaaac acgggccggt cgtttacctc cggccatgta ctcgtccgtt tcagccagca
     9181 tcccgggagc atcaagctgt acctgctgtt gcggtaccga aagacttgct gtccccatct
     9241 cgcgccccag cgcgcaaaag aaaacccgcg cataggcggg ctccagaagc agcggttcat
     9301 tgaatgctgc tgcaataatg tgtgaaagat tacgtctcac gtggtgttgt ctcctcttcc
     9361 ggcctgcgac tctccgctat ctgctgctga tacgcctgcg ctatccacac cggacgtgag
     9421 agtccggctt tttcccgctc tgcagattcc ctgacctgtt ggcagaaaat gtcctgataa
     9481 tcctcgccca tcagcgccag ctctttctca tacgtgctca gtccggcctc aatgcgcatc
     9541 actgattcct gaacctcctt gagcccgtca atggccattc ttccggctcc aatccactca
     9601 gcccgtgacc aggctgatcg cgcctgataa aaatcaaacc gtgcccgtgg cggacgaata
     9661 atcccccgaa gaagtgcctc ttccagccag caggaaaaca tctgcgtggc cagccgggac
     9721 gcaataaatt ttcgccgccc cataaaatag cgccacgact cattggcgga tgcgcgggca
     9781 cttgagtaac tgaccttcga gtaatcacgg gacaactgtt cgtaggaaac gccaagaccg
     9841 gcggcgatat accgcagcag cgcctgttca agcgccgaaa atccattgtc tgaatcctgc
     9901 gcggtctgaa gtttcagatc atcaccgggg aaaaggtgcg gaattttgac accgcccagc
     9961 atcacgctat tcgtgtcata ccaggtggag aacttatcca gaatattaat aagcggatta
    10021 tccttctgcc cctgcggcgc accggcgata tattcaaagg ccttttcggt atcaaggtca
    10081 ctttcaatcg tcgctgcata catcgccttt atgaaaagac aggaaaaaat aaaatttaaa
    10141 aacagtacat tacgaatgct cagacctatc gtttaaagga gtcgcaatac acactgcaat
    10201 acacgattat ttataagatg agcggcatcc gtcataaagc tggtggatgc tttttctatg
    10261 catatatgca cagttttagt gggcgttaat gtcgatatag ggatccccat atcgagattg
    10321 gataccaggc ttttttaatc aggctggtgg gctttacctg ttttgtatga gtggtcatca
    10381 tgaccatgtc ataacaaaaa ccccatattc gtggtttttc tgtgtcgggc tattctgtcg
    10441 ttgctgtgct gatttggctg gtgggctgaa tcatcattac ggcgatgcag ctatgtagac
    10501 gttccggcct cctcaaattg aggattgtgg aagaatcaat gggttagtct tactttcccg
    10561 acatccccca atggggggtt tcgaaacaat caatagctta ggcttacttc cccgatttcc
    10621 tgcattgcag gttttcgaaa taatcaatgg gttaggccat cgtgcaattt tgcactttgc
    10681 cagccagcgc aatgtcgcgt tatcagtcct cagatgtgag ggatgtagcc agcttttccc
    10741 ccagtggggg atatccagca ccgacggctt aactgtgcgt gccagcacaa ggtagccttg
    10801 aactacttac tgcatcccat cttacaggcc gtgccttcct gcttaacttt ttgcaatgca
    10861 acaagtcagc cagcgcaatt ttgcgttatc gggaatatca gcaagttacc gccgcaatcg
    10921 ttccggcttc ttccactggt aagtattttt cgcgctctcc ctccgttgtt gagaacggcg
    10981 acgatatgcc agcaactcaa ggactcttgt tcgtatgttg cgcatatcca cgccgttaag
    11041 ctcaataccg tcacggcgca tcacctcagc cactacacgc acataattat ctgcggtcac
    11101 gctgtccggc tgcgtggcct gttcgtcatg ctgcttgctg attccacaag cacggcggat
    11161 taatcgcagt atttcggatt cagtcatagc gtactacgtt acttatcttt attcggctgc
    11221 aacttatccg gtacgtttcc ggcagtttcc atcagataat cggac
//
LOCUS       DADMHM010000129        11056 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.130, whole genome shotgun sequence.
ACCESSION   DADMHM010000129 DADMHM010000000
VERSION     DADMHM010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 11056)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11056)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11056
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.130"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            188..2394
                     /gene="traD"
                     /locus_tag="JN125_002905"
                     /pseudo
     CDS             188..2394
                     /gene="traD"
                     /locus_tag="JN125_002905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016233146.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type IV conjugative transfer system coupling
                     protein TraD"
     gene            complement(2403..2801)
                     /gene="vapC"
                     /locus_tag="JN125_002906"
     CDS             complement(2403..2801)
                     /gene="vapC"
                     /locus_tag="JN125_002906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(fMet)-specific endonuclease VapC"
                     /protein_id="HAY8872612.1"
                     /translation="MLKFMLDTNICIFTIKNKPASVRERFNLNQGRMCISSVTLMELI
                     YGAEKSQMPERNLAVIEGFVSRIDVLDYDAAAATHTVQIRAELARQGRPVGPFDQMIA
                     GHARSRGLIIVTNNTREFERVGGLRTEDWS"
     gene            complement(2801..3028)
                     /gene="vapB"
                     /locus_tag="JN125_002907"
     CDS             complement(2801..3028)
                     /gene="vapB"
                     /locus_tag="JN125_002907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system antitoxin VapB"
                     /protein_id="HAY8872613.1"
                     /translation="METTVFLSNRSQAVRLPKAVALPENVKRVEVIAVGRTRIITPAG
                     ETWDEWFDGHSVSADFMDNREQPGMQERESF"
     gene            3110..3526
                     /locus_tag="JN125_002908"
                     /pseudo
     CDS             3110..3526
                     /locus_tag="JN125_002908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005030230.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugative relaxase"
     gene            3513..8384
                     /gene="traI"
                     /locus_tag="JN125_002909"
     CDS             3513..8384
                     /gene="traI"
                     /locus_tag="JN125_002909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005079803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugative transfer relaxase/helicase TraI"
                     /protein_id="HAY8872614.1"
                     /translation="MLTGNLVMALFNHDTSRDQEPQLHTHAVVTNVTQHNGEWKTLSS
                     DKVGKTGFIENVYANQIAFGRLYREKLKEQVEALGYETEVVGKHGMWEMPGVPVEAFS
                     GRSQTIREAVGEDASLKSRDVAALDTRKSKQHVDPEVRMAEWMQTLKETGFDIRAYRD
                     AAEQRAYTRTQTPGPASQDGPDVQQAVTQAIAGLSERKVQFMYTDLLARTVGILPPEN
                     GVIERARAGIDEAISREQLIPLDREKGLFTSGIHMLDELSVRALSRDIMKQNRVTVHP
                     EKSVPRTAGYSDAVSVLAQDRPSLAIVSGQGGAAGHRERVAELVMMAREQGREVQIIA
                     ADRRSQMNLKQDERLSGELITGRRQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDGA
                     ARHNVQVLITDSGQRTGTGSALMAMKDAGVNTYRWQGGEQRPATIISEPDRYVRYARL
                     AGDFAASVKAGEESVAQVSGVREQAILTQAIRSELKTQGVLGHPEVTMTALSPVWLDS
                     RSRYLRDMYRPGMVMEQWNPETRSHDRYVTERVTAQSHSLTLRNAQGETQVVRISSLD
                     SSWSLFRPEKMPVADGERLRVTGKIPGLRVSGGDRLQVASVSEDAMTVVVPGRAEPAT
                     LPVSDSPFTALKLENGWVETPGHSVSDSATVFASVTQMAMDNATLNGLARSGRDVRLY
                     SSLDETRTAEKLARHPSFTVVSEQIKARAGETLLETAISLQKAGLHTPAQQAIHLALP
                     VLESKNLAFSMVDLLTEAKSFAAEGTGFADLGGEINAQIKRGDLLYVDVAKGYGTGLL
                     VSRASYEAEKSILRHILEGKEAVTPLMERVPGELMEKLTSGQRAATRMILETSDRFTV
                     VQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSAGVDAQTLASFL
                     HDTQLQQRSGEIPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRAVASGDTDQLQA
                     IAPGQPFRLQQTRSAADVVIMKEIVRQTPELREAVYSLINRDVERALSGLERVKPSQV
                     PRLEGAWAPEHSVTEFSHSQEAKLAEAQQKAMLKGEAFPDVPMTLYAAIVRDYTGRTP
                     EAREQTLIVTHLNEDRRVLNSMIHDAREKAGELGQVQVMVPVLNTANIRDGELRRLST
                     WENNPDALALVDNVYHRIAGISKDDGLITLQDAEGNTRLISPREAVAEGVTLYTPDTI
                     RVGTGDRIRFTKSDRERGYVANSVWTVTAVSGDSVTLSDGQQTRVIRPGQERAEQHID
                     LAYAITAHGAQGASETFAIALEGTEGNRKLMAGFESAYVALSRMKQHVQVYTDNRQGW
                     TDAINNAVQKGTAHDVFEPKPDREVMNAERLFSTARELRDVAAGRAVLRQAGLAGGDS
                     PARFIAPGRKYPQPYVALPAFDRNGKSAGIWLNPLTTDDGNGLRGFSGEGRVKGSGDA
                     QFVALQGSRNGESLLADNMQDGVRIARDNPDSGVVVRIAGEGRPWNPGAITGGRVWGD
                     IPDNSVQPGAGNGEPVTAEVLAQRQAEEAIRRETERRADEIVRKMAENKPDLPDGKTE
                     QAVREIAGQERDRAAITEREAALPESVLREPQRVREAVWEVARENLLQERLQQMERDM
                     VRDLQKEKTPGGD"
     gene            8404..9150
                     /gene="traX"
                     /locus_tag="JN125_002910"
     CDS             8404..9150
                     /gene="traX"
                     /locus_tag="JN125_002910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858383.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type-F conjugative transfer system pilin
                     acetylase TraX"
                     /protein_id="HAY8872615.1"
                     /translation="MTTDNTNTTRNDSLAARTDTWLQSFLVWSPGQRDIIKTVALVLM
                     VLDHINLIFQLKQEWMFLAGRGAFPLFALVWGLNLSRHAHIRQPAINRLWGWGIIAQF
                     AYYLAGFPWYEGNILFAFAVAAQVLTWCETRSGWRTAAAILLMALWGPLSGTSYGIAG
                     LLMLAVSNRLYRAEDRAERLALVACLLAVIPALNLATSDAAAVAGLVMTVLTVGLVLC
                     AGKSLPRFWPGDFFPTFYACHLAVLGVLAL"
     gene            9205..9765
                     /locus_tag="JN125_002911"
     CDS             9205..9765
                     /locus_tag="JN125_002911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fertility inhibition protein FinO"
                     /protein_id="HAY8872616.1"
                     /translation="MTEQKRPVLTLKRKTEGETLVRSRKTIINVTTPPKWKVKKQKLA
                     EKAAREAELAAKKVQARQALSIYLNLPTLDDAVNTLKPWWPGLFDGDTPRLLACGIRD
                     MLLEDVAQRNIPLSHKKLRRALKAITRSESYLCAMKAGACRYDTEGYVTEHISQEEEA
                     YAGARLAKIRRQNRIKAELQAVLDEK"
     gene            9896..10108
                     /locus_tag="JN125_002912"
     CDS             9896..10108
                     /locus_tag="JN125_002912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_958725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANR family transcriptional regulator"
                     /protein_id="HAY8872617.1"
                     /translation="MNGFRNSSRNGQVWRYQRAGGRAVILEVSGRWMEAAEAWRRAAC
                     VAPRTDWQQFARKRAEHCHRRCRGRG"
     gene            10292..10792
                     /locus_tag="JN125_002913"
     CDS             10292..10792
                     /locus_tag="JN125_002913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001302180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HAY8872618.1"
                     /translation="MLHYSGGLKYRCHLSDMENNMRKYIPLVLFIFSWPVLSADIHGR
                     VVRVLDGDTIEVMDSLKAVRIRLVNIDAPEKKQDYGRWSTDMMKSLVAGKTVTVTYFQ
                     RDRYGRILGQVYAPDGMNINQFMVRAGAAWVYEQYNTDPVLPVLQNEARQQKRGLWSD
                     ADPVPP"
     gene            10859..>11056
                     /gene="hha"
                     /locus_tag="JN125_002914"
     CDS             10859..>11056
                     /gene="hha"
                     /locus_tag="JN125_002914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_958726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin expression modulator Hha"
                     /protein_id="HAY8872619.1"
                     /translation="MAKTKQEWLYQLRRCSSVNTLEKIIHKNRDSLSNRERESFNSAA
                     DHRLAELITGKLYDRIPKEIWK"
BASE COUNT         2622 a         2738 c         3389 g         2307 t
ORIGIN      
        1 ccggaaagaa ataaaataaa ttttatttct ccccggcgtt tccgaaataa atatgaaaac
       61 actgagcggt tgtgcaaatt ctttgtgcga ccgtgaagtg ttgccggcga agccggaatt
      121 taacggttat taatcttttc atcattaata atcagtccga ctgactttct ttcttcggaa
      181 tatcatcatg agttttaacg caaaggatat gacccagggc ggtcagattg cgtccatgcg
      241 tatccgcatg ttcagccaga tcgccaatat tatgctttac tgcctgttta ttttttctgg
      301 atactcgttg gtctggtttt atgggtaaaa ataagctggc agacgtttgt gaatggctgt
      361 atttactggt ggtgtaccac gctggaaggc atgcgggatt taatcaagtc tcagccggta
      421 tatgagattc agtattacgg caaaaccttc cggatgaacg ctgctcaggt actgcatgat
      481 aaatatatga tctggtgcgg tgagcagtta tggtctgcat tcgttctggc cacagttgtg
      541 gcactggtta tttgcctgat taccttcttt gttgtctcct ggattctggg gcgtcagggt
      601 aaacaacaga gcgaaaatga agtcacaggt ggtcgtcaac tgacagacaa tccgaaagac
      661 gttgcccgga tgctgaaaaa agacggcagg gactccgata tccggattgg cgatctgccg
      721 attatccggg attccgaaat ccagaacttc tgtctgcacg gcacggtcgg ggccggtaag
      781 tcggaggtta tccgtcgtct ggccaactac gcccgtcagc gtggtgatat ggtggtgatt
      841 tatgaccgtt caggggaatt tgttaaaagt tactatgatc cctccatcga taagatcctg
      901 aatccgctgg atgcacgctg tgccgcctgg gatttgtgga aggagtgcct gacacagccg
      961 gattttgata ataccgcaaa tactctgatc ccgatgggca caaaagagga cccgttctgg
     1021 cagggttcag gacgtaccat ttttgcggaa gcggcgtatc tgatgcgtaa tgaccccaac
     1081 cgcagctaca gcaaactggt ggacacactg ctttccatca aaattgaaaa actgcgtacc
     1141 tacctgcgta attcaccggc ggccaacctg gtggaagaga aaatcgagaa aacggccata
     1201 tccatccgtg ctgtgctgac caactatgtg aaagccatcc gttacctgca ggggattgag
     1261 cataacggtg agcccttcac catccgtgac tggatgcgtg gtgtccggga ggatcagaaa
     1321 aacggctggc tgtttatctc gtcgaatgcc gacactcatg cctccctgaa gccggtgatc
     1381 tccatgtggc tgtccattgc cattcgtggt ctgctggcaa tgggagaaaa ccgtaatcgt
     1441 tgtgtgtggt tcttctgtga tgagttaccc acattacaca aactgccgga cctggtggag
     1501 atcctgccgg aagcccgtaa gttcggtggc tgttatgtgt ttggtatcca gtcctatgcc
     1561 cagctggaag atatctacgg tgagaaagcg gctgccacgc tgtttgacgt catgaacacc
     1621 cgtgcctttt tccgttctcc cagccataag attgcggagt tcgctgccgg tgaaattggt
     1681 gagaaagagc acctgaaagc cagcgaacag tattcctacg gtgctgatcc ggtacgtgac
     1741 ggggtatcga ccggtaagga tatggagcgc cagacgctgg tcagttattc cgacattcag
     1801 tccctgccgg atctgacctg ctatgtcacc ctgcccggac cgtatccggc agtcaaactc
     1861 tcactgaaat atcaggaacg accgaaggtc gctccggagt ttattccgcg tgacatcaac
     1921 ccggaaatgg agaaccgtct gagtgccgta cttgccgcaa gggaagcaga aggtcgtcag
     1981 atggccagcc tcttcgaacc ggatgtcccg gaggttgttt ccggagaaga cgtgactcag
     2041 gctgaacagc cgcaacagcc gcaacagccg caacagccgc aacagccgca acagccgcaa
     2101 cagccgcaac agccggtgtc tcctgtcatc aacgataaga agtcagattc aggtgtgaat
     2161 gttccggcag gggggatcga gcaggagctg aaaatgaaac cggaagaaga gatggaacag
     2221 caactgccac ccgggatcag tgaatccggt gaagtggtgg atatggccgc ttatgaggca
     2281 tggcagcagg aaaatcatcc ggacacctgg cagcagatgc agcgtcgtga agaggtgaac
     2341 atcaatgtgc accgggaacg cggggaggat gttgagccgg gagatgattt ctgatgaaca
     2401 ggtcagctcc agtcttcagt tctcaggccg cccacacgtt caaattcccg ggtgttatta
     2461 gtcacaataa tcagcccccg actgcgggca tgacctgcga tcatttgatc aaatggcccg
     2521 acagggcgtc cctgacgggc aagttctgct cttatctgga cggtgtgtgt ggctgcagca
     2581 gcgtcgtaat ccagaacatc aatgcgggaa acaaatccct cgatcacagc gagattacgt
     2641 tcaggcatct ggcttttttc tgcaccatat atcagctcca tcagggtgac cgaactgata
     2701 cacattctcc cctggttcag gttaaaacgc tccctgacgc tggcgggttt gttctttatc
     2761 gtaaaaatgc agatgttggt atcgagcata aacttcagca tcagaatgac tccctttcct
     2821 gcatgccggg ctgttccctg ttatccataa aatcggcgct gacgctgtgt ccgtcgaacc
     2881 attcgtccca tgtctctccg gctggcgtaa tgattctggt tcgtccgaca gcaatcactt
     2941 caacgcgttt tacgttttcc ggcaatgcaa ccgcttttgg cagtctgacc gcctggctgc
     3001 ggttgctgag aaatacggtg gtttccatta tttgcctcct tatgtggata tgtcttgtgt
     3061 atatccattg tgggattgat accgggatat gtcaaaggga tatacgttta tgatgagtat
     3121 cgcgcaggtc agatcggccg gaagtgccgg gaattattat accgacaagg ataattacta
     3181 tgtgctgggc agcatgggag aacgctgggc cggccagggg gctgaacaag gctgcagggc
     3241 agtgtcgata aggatgtctt tacccgcctt ctggagggca ggctgccgga cggggcggat
     3301 ttaagccgca tgcaggatgg cagtaacagg catcgtcccg gctacgacct gaccttctcc
     3361 gctcccaaaa gtgtctccat gatggccatg ctcggggggg gacaaacgtc ttattgaagc
     3421 acataaccag gccgtggatt ttgctgtccg tcatcacccg tgtggaggca ctggcctcca
     3481 cacgggtgat gacggacgga cagtcagaaa cggtgctgac cggtaatctg gtgatggcac
     3541 tgtttaacca cgacaccagt cgcgatcagg aaccacagtt acacacgcat gcggtggtga
     3601 ctaatgttac gcagcataac ggcgaatgga agacactgag cagtgacaaa gtggggaaaa
     3661 cggggttcat tgagaatgtg tacgctaatc agattgcctt tggcaggctc taccgggaaa
     3721 aactgaaaga gcaggttgag gcgctgggct atgaaactga agtggtcggt aagcacggta
     3781 tgtgggaaat gccgggtgta ccggtggagg ccttttccgg acgctcacag actatccggg
     3841 aggccgtcgg ggaagacgcc tcgctgaaat cccgggatgt ggcggcgctg gatacgcgta
     3901 aatccaaaca gcacgtcgat cctgaagtca gaatggccga gtggatgcag acgctgaagg
     3961 aaaccgggtt cgacatccgg gcatatcgtg acgcagcgga acaacgggca tatacccgca
     4021 cgcagacacc cggacccgct tcacaggacg ggccggatgt gcagcaggcg gtgacacagg
     4081 ccattgccgg attaagtgaa cgcaaagtgc agtttatgta tacggacctg ctggccagga
     4141 cggtcggcat actgccgccg gaaaatggtg tgattgaacg ggcacgcgcc ggtatcgatg
     4201 aggccatcag ccgtgagcag cttatccccc tcgatcgtga gaaggggctg ttcacgtccg
     4261 ggattcatat gctcgatgag ctgtcagtcc gggcactcag tcgtgacatc atgaaacaga
     4321 accgggtgac cgtacatccg gagaaaagtg tcccccggac ggccggttac agcgatgccg
     4381 tcagtgttct ggcacaggac cgtccgtcgc tggccattgt gtccgggcag ggcggtgcag
     4441 ccgggcatcg tgagcgggtg gctgaactgg tcatgatggc ccgggagcag gggcgggagg
     4501 tgcagattat cgctgctgac cgtcgctcgc agatgaacct gaagcaggat gaacggctgt
     4561 ccggtgaact gataaccgga cgtcgtcagt tgctggaagg catggccttc acgccgggca
     4621 gtaccgttat cgtcgaccag ggcgaaaaac tctccctgaa agagacgtta accctgctgg
     4681 atggtgccgc acgtcataac gtacaggtcc tgataactga cagcgggcag cgaaccggta
     4741 caggcagtgc actgatggcc atgaaggatg ccggggtgaa cacatatcgc tggcaggggg
     4801 gagaacagcg accggccacc atcatcagtg aaccggaccg ttatgtccgc tatgcccggc
     4861 tggccggaga ttttgcggcc agcgtgaaag ccggagaaga gagcgtggca caggtcagcg
     4921 gagtacggga acaggccata ctgacacagg ccattcgcag tgagctgaaa acacagggcg
     4981 tgctcggaca cccggaggta accatgaccg ccctgtcacc ggtctggctg gacagccgga
     5041 gccgttatct gcgggatatg taccgcccgg gaatggtgat ggagcagtgg aacccggaga
     5101 cacgcagtca tgaccgctat gtgacagaac gtgtgacggc gcagagtcac agcctgaccc
     5161 tgcggaatgc gcagggcgaa acgcaggtgg tgcgtatttc ttccctggac agcagctggt
     5221 cgctgttccg gccggaaaaa atgccggtgg cagacggtga gcgtctgagg gtgacaggga
     5281 aaattcccgg actccgcgtc tccggcggtg accgcctgca ggtggcatcc gtcagtgaag
     5341 atgcgatgac ggttgttgtg ccgggacggg ctgaaccggc caccctgcct gtgagcgatt
     5401 caccgttcac ggcactgaag ctggagaacg gctgggtgga aacgcccggg cattccgtca
     5461 gcgacagtgc gacggttttt gcctccgtca cacagatggc aatggacaat gccaccctga
     5521 acggtctggc ccgcagtggt cgtgatgtcc ggctgtattc ctcactggat gaaacccgta
     5581 ctgcggaaaa acttgcccgc catccctcct ttacggtggt ttctgagcag ataaaggcgc
     5641 gtgccggtga gacattgctg gaaaccgcta tcagtctgca gaaagccggg cttcacacgc
     5701 cggcacagca ggccattcat ctggcccttc ctgtgctgga aagtaaaaac ctggccttca
     5761 gcatggtgga cctgctgaca gaggcgaagt cgtttgctgc agaaggaacc ggttttgctg
     5821 acctgggagg ggaaatcaat gcgcagataa aacggggtga tttactgtat gtggatgtgg
     5881 caaaaggcta tggcacaggc ctgctggttt cccgtgcgtc gtatgaggca gaaaagagca
     5941 ttcttcgcca tattctcgaa ggtaaggaag cggtcacgcc gctgatggag agagtacctg
     6001 gcgaactcat ggagaaactg acatcaggac agcgcgccgc cacccgtatg atactggaaa
     6061 cgtccgaccg tttcacggtg gtgcagggct atgccggtgt gggtaagacc acacagttcc
     6121 gggcggtgat gtcagccgtg aacatgctgc cggagagtga acgtccccgt gtcgtggggc
     6181 tggggcccac acaccgtgcg gtcggggaga tgcgcagcgc cggcgtggat gcacagacac
     6241 tggcgtcctt tctgcatgac acgcagctgc agcagcgcag cggagaaata ccggatttca
     6301 gcaacacgct gttcctgctc gatgagagct caatggtggg caataccgac atggcacggg
     6361 catatgccct gattgcggcc ggtggcggtc gggctgtggc cagcggtgac acggaccagc
     6421 tgcaggccat cgcgcccggt cagcctttcc gtctccagca gacgcgcagt gctgccgatg
     6481 tggtcatcat gaaggagatt gtgcgtcaga cgccggaact gcgggaggcg gtatacagcc
     6541 tgattaaccg ggatgtggaa agggcgctgt ccgggcttga gcgtgtgaaa ccgtctcagg
     6601 tgccacgtct ggagggcgca tgggcaccgg agcactccgt gacggagttc agtcacagcc
     6661 aggaagcgaa actggcagaa gcgcagcaga aggcgatgct gaaaggcgag gcttttccgg
     6721 atgtccccat gacactgtat gcagccattg tccgcgacta taccggcagg acaccggaag
     6781 cacgggagca gacgctgatt gtcacgcacc tgaatgagga ccggcgcgta ctgaacagca
     6841 tgattcatga tgcacgggaa aaggccggag aactggggca ggtgcaggtc atggtgcctg
     6901 tcctgaacac agcgaatata cgcgacgggg agctgcgtcg tctctccacc tgggagaata
     6961 acccggatgc ccttgccctg gtggataatg tgtatcaccg gattgccggt atcagcaagg
     7021 atgacgggct gataaccctg caggatgcgg aaggtaacac gcggctgatt tcgccccggg
     7081 aggcggtggc tgaaggcgtc acgctgtaca ccccggacac catccgggtg gggaccggtg
     7141 acaggatacg cttcacgaag agtgaccggg agcgcggtta tgtggccaac agcgtctgga
     7201 cggtgacagc ggtttccggt gacagtgtca cactttctga cggtcagcag acccgtgtga
     7261 ttcgccccgg tcaggagcgg gcagagcaac atattgacct ggcctatgcc atcaccgccc
     7321 atggtgcaca gggggcgagt gaaacctttg ccatcgcgct tgaaggcacg gaaggtaacc
     7381 ggaaactgat ggccggcttt gagtcagcct acgtggccct gtcgcgtatg aagcagcatg
     7441 tgcaggtgta caccgataac cgtcagggct ggacggatgc catcaacaat gccgtacaga
     7501 aaggaactgc ccacgatgtg tttgagccga aaccggaccg ggaggtcatg aatgcagagc
     7561 ggctgttcag tacggcgcgg gagctgcggg acgtggcggc aggccgtgcc gttctccgtc
     7621 aggcggggct ggccggggga gacagtcctg cacggtttat tgctccggga cgtaaatatc
     7681 cgcaaccgta tgtggcactg ccggcgtttg accgtaacgg caagtccgcc ggtatctggc
     7741 tgaacccgct gaccacggat gacggaaacg ggctgcgggg attcagcggt gaaggtcggg
     7801 taaaaggtag cggggatgcg cagttcgtgg ccctgcaggg cagccgtaac ggagaaagcc
     7861 tgctggctga taatatgcag gatggcgtcc ggattgcccg tgataatcct gacagtggtg
     7921 tggtggtaag aatcgccggt gaaggccgtc cgtggaatcc cggtgccatc accggtggcc
     7981 gcgtgtgggg ggatatcccg gacaacagcg tccagccggg agccggaaat ggcgaaccgg
     8041 tcacggcaga ggtactggca cagcggcagg ctgaagaggc catccgccgt gaaacggaac
     8101 gtcgcgcaga tgaaattgtc cgtaaaatgg cagagaacaa acctgacctg ccggacggca
     8161 aaacagagca ggctgtcagg gaaattgccg ggcaggagcg tgaccgggct gccataactg
     8221 aacgggaagc cgcgctgccg gagagtgtac tgcgtgaacc acaacgggtg cgggaagcgg
     8281 tctgggaagt tgcccgggaa aatttgctgc aggagcgtct gcagcagatg gagcgggata
     8341 tggttcgtga cctgcagaaa gagaaaaccc cgggcggaga ctgatacagg aagacaaaca
     8401 ctgatgacaa cggataacac gaacacgaca cgtaacgatt cactggctgc acggaccgat
     8461 acctggttgc agtcatttct ggtctggtca cccggacagc gggatatcat caaaacggtg
     8521 gcactggtgc tgatggtact ggaccacatc aatctgatat tccagctgaa gcaggaatgg
     8581 atgtttctgg ccgggcgagg agcctttccg ctttttgccc tggtgtgggg gctgaatctg
     8641 tcccgtcatg cgcatatccg gcaaccggcc attaaccggc tgtggggatg gggaattatt
     8701 gcccagttcg catattatct ggcaggcttt ccctggtatg aggggaatat cctgtttgcc
     8761 tttgcagtgg cggcacaggt gctgacgtgg tgtgaaacgc gcagtgggtg gcgtacagca
     8821 gcggccatac tcctgatggc cctgtggggg cctttgtccg gcaccagtta cggtattgcc
     8881 gggttgctga tgctggcagt cagcaaccgg ctgtaccggg cggaagacag agcggaacgt
     8941 ctggcgctgg tcgcctgcct gctggctgtt attccggcgc ttaaccttgc caccagtgat
     9001 gcagcggcgg tggccggtct tgtgatgacg gtgctgaccg ttggtctggt gttgtgtgcc
     9061 ggaaaatcat taccccgttt ctggcccgga gactttttcc cgacgttcta tgcctgtcat
     9121 ctggctgtgc tgggcgttct ggcgctgtga cgggtgtggt atctttggcc gcaagaggat
     9181 gattcgtcag aggcagaaca cagcatgaca gagcagaagc gaccggtact gacactgaag
     9241 cggaagacag aaggggagac gcttgtccgc agccggaaaa ccatcatcaa tgtcaccacg
     9301 ccaccaaagt ggaaggtgaa aaagcagaag ctggccgaga aagcagcccg ggaagcagag
     9361 ctggcggcaa aaaaagtgca ggccagacag gcgctgtcca tttatctgaa tctgcccacg
     9421 ctggatgatg ccgtgaacac cctgaagccc tggtggccgg gattatttga cggtgacacg
     9481 ccccggcttc tggcctgcgg tatccgggac atgttactgg aagacgtggc gcagcggaat
     9541 atcccgctct cgcataaaaa actgcgcagg gcgctgaagg ccatcacccg ttcagaaagc
     9601 tatctgtgtg ccatgaaagc cggtgcctgc cggtatgaca cggaagggta tgtgacggag
     9661 catatttctc aggaggagga agcgtatgcg ggagcgcgtc tggcgaaaat tcgtcgccag
     9721 aaccggataa aggcagaact tcaggccgtg cttgatgaga aataaaaaaa gcctccccca
     9781 gagagaggag gcagggaaat aaggcttaaa aggaaataac ttccgcttcc gaaaggaagc
     9841 cagtccactg aattatttat cacaataata ctgacaacta aagggggaca agaaaatgaa
     9901 tggattcaga aacagttcac ggaacggcca ggtctggcgt taccagcgtg ccggcgggcg
     9961 ggccgttatt ctggaagtca gtggacgctg gatggaagcg gcagaagcat ggcgacgggc
    10021 tgcctgtgtt gcgcctagga cagactggca gcagtttgcc cggaaaaggg ctgaacactg
    10081 ccaccggcgc tgccggggaa gggggtaacg aaaaaagcag ccttcattac tccaggagtc
    10141 agaaggctga aaggagttta tgagatttgc ttcttaatat ccggtcgggc agtatgaccg
    10201 gacagttctg agtagcacag agtcttttcc gcattaagtc gattttttat attttgtgat
    10261 taatttcaca aaataaggtg ttattcaatg tgtgctgcac tattcagggg ggctgaaata
    10321 caggtgccat ttatctgata tggagaataa catgaggaaa tatattccac tggtattatt
    10381 tatcttttca tggccggtat tgtctgcaga tattcatgga cgggttgttc gtgtactgga
    10441 cggtgatacc atcgaggtca tggactcact gaaggcggtg cggatcaggc tggtaaatat
    10501 tgatgcaccg gaaaagaaac aggattatgg ccggtggtca acagacatga tgaaatcact
    10561 ggtcgcagga aaaacggtta ccgtcacata ttttcagcga gatcgttatg gtcgtattct
    10621 cgggcaggtt tatgcaccag acggaatgaa tattaatcag tttatggtcc gggccggggc
    10681 tgcctgggta tatgagcagt acaacacaga tcccgtgcta cctgtccttc agaacgaagc
    10741 cagacaacaa aaacgtgggc tctggtcaga tgctgatccg gttcccccct agatatggag
    10801 gcaccgtaaa taaagcgatg gcaatcctat cattcatctg ttctcagcgg gaataaaaat
    10861 ggcaaaaaca aaacaggaat ggctgtatca gttacggcga tgttcatcag tcaatacgct
    10921 ggaaaaaatt attcataaaa acagagacag tttatcaaac agagaacgtg aatcatttaa
    10981 ttcagcagca gaccaccggc tagcggaatt aatcaccgga aagttatatg acaggatacc
    11041 aaaagagata tggaaa
//
LOCUS       DADMHM010000130        10966 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.131, whole genome shotgun sequence.
ACCESSION   DADMHM010000130 DADMHM010000000
VERSION     DADMHM010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10966)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10966)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10966
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.131"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            190..531
                     /locus_tag="JN125_002915"
     CDS             190..531
                     /locus_tag="JN125_002915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flxA-like family protein"
                     /protein_id="HAY8872620.1"
                     /translation="MATISSTSIPSIQTQSSNRASQGSDVASQIARISQQIIKLTQQI
                     KEIVDTSGSAEDKQKQAELIQQQITLLETQLAQLQKQQAEKAQEKEQRLSLNVSLLNP
                     VEKTTHIDIYI"
     gene            complement(522..1448)
                     /locus_tag="JN125_002916"
     CDS             complement(522..1448)
                     /locus_tag="JN125_002916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY8872621.1"
                     /translation="MNYSLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENH
                     TGVRLLDRTTREVVLTDAGQQLALRLERLLDELNSTLRDTGRMGQQLSGKVRVAASQT
                     ISAHLIPQCIAESHRRYPDIQFVLHDRPQQWVMESIRQGDVDFGIVIDPGPVGDLQCE
                     AILSEPFFLLCHRDSALAVEDYVPWQALQGAKLVLQDYASGSRPLIDAALARNGIQAN
                     IVQEIGHPATLFPMVAAGIGISILPALALPLPEGSPLVVKRITPVVERQLMLVRRKNR
                     SLSTAAEALWDVVRDQGNALMAGREGDPLYQI"
     gene            1538..2536
                     /locus_tag="JN125_002917"
     CDS             1538..2536
                     /locus_tag="JN125_002917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile acid:sodium symporter"
                     /protein_id="HAY8872622.1"
                     /translation="MKLFRILDPFTLTLITVVLLASFFPARGDFVPFFENLTTAAIAL
                     LFFMHGAKLSREAIIAGGGHWRLHLWVMCSTFVLFPILGVLFAWWKPVNVDPMLYSGF
                     LYLCTLPATVQSAIAFTSMAGGNVAAAVCSASASSLLGIFLSPLLVGLVMNVHGAGGS
                     LEQVGKIMLQLLLPFVLGHLSRPWIGDWVSRNKKWIAKTDQTSILLVVYTAFSEAVVN
                     GIWHKVGWGSLLFIVVVSCVLLAIVIVVNVFMARRLGFNKADEITIVFCGSKKSLANG
                     IPMANILFPTSVIGMMVLPLMIFHQIQLMVCAVLARRYKRQTEQLQAQQESSADKA"
     gene            complement(2533..2751)
                     /locus_tag="JN125_002918"
     CDS             complement(2533..2751)
                     /locus_tag="JN125_002918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872623.1"
                     /translation="MEKEQLIEIANTIMPFGKYKGRRLIDLPEEYLLWFARKDEFPAG
                     KLGELMQITLLIKTEGLTQLVQPLKRPL"
     gene            complement(2753..4768)
                     /gene="ligA"
                     /locus_tag="JN125_002919"
     CDS             complement(2753..4768)
                     /gene="ligA"
                     /locus_tag="JN125_002919"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HAY8872624.1"
                     /translation="MESIEQQLTELRMTLRHHESLYHVMDAPEIPDAEYDRLMRELRE
                     LETKHPELITPDSPTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL
                     KNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLH
                     GENIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKR
                     PLTFFCYGVGVLEGGELPDTHLGRLLQFKKWGLPVSDRVTLCESAEEVLAFYHKVEED
                     RPTLGFDIDGVVIKVNSLEQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRT
                     GAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVL
                     SERPEDTREVVFPTHCPVCGSDVERVEGEAVARCTGGLICGAQRKESLKHFVSRRAMD
                     VDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTF
                     ARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAE
                     ESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAKARLVEL
                     GAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGS"
     gene            complement(4839..5825)
                     /gene="zipA"
                     /locus_tag="JN125_002920"
     CDS             complement(4839..5825)
                     /gene="zipA"
                     /locus_tag="JN125_002920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZipA"
                     /protein_id="HAY8872625.1"
                     /translation="MMQDLRLILIIVGAIAIIALLVHGFWTSRKERSSMFRDRPLKRM
                     KSKRDDDYYDEDVEDDEGVGEVRVHRVNHAPANAQEHEAARPSPQHQYQPPYASAQPR
                     QPVQQPPEAQVPPQHAPRPAQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPA
                     QQAFQPAEPVAAPQPEPVAEPAPVMDKPKRKEAVIIMNVAAHHGSELNGELLLNSIQQ
                     AGFIFGDMNIYHRHLSPDGSGPALFSLANMVKPGTFDPEMKDFTTPGVTIFMQVPSYG
                     DELQNFKLMLQSAQHIADEVGGVVLDDQRRMMTPQKLREYQDIIREVKDANA"
     gene            6055..6816
                     /gene="cysZ"
                     /locus_tag="JN125_002921"
     CDS             6055..6816
                     /gene="cysZ"
                     /locus_tag="JN125_002921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate transporter CysZ"
                     /protein_id="HAY8872626.1"
                     /translation="MVSSFTSAPRSGFYYFAQGWKLVSQPGIRRFVILPLLVNILLMG
                     GAFWWLFTQLDVWIPTLMSYVPDWLQWLSYLLWPLAVISVLLVFGYFFSTIANWIAAP
                     FNGLLAEQLEARLTGATPPDTGIFGIMKDVPRIMKREWQKFAWYLPRAIVLLILYFIP
                     GIGQTVAPVLWFLFSAWMLAIQYCDYPFDNHKVPFKEMRTALRTRKITNMQFGALTSL
                     FTMIPLLNLFIMPVAVCGATAMWVDCYRDKHAMWR"
     gene            7001..7972
                     /gene="cysK"
                     /locus_tag="JN125_002922"
     CDS             7001..7972
                     /gene="cysK"
                     /locus_tag="JN125_002922"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000034402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HAY8872627.1"
                     /translation="MSKIFEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVKCR
                     IGANMIWDAEKRGVLKPGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRK
                     LLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKTTGPE
                     IWEDTDGQVDVFIAGVGTGGTLTGVSRYIKGTKGKTDLISVAVEPTDSPVIAQALAGE
                     EIKPGPHKIQGIGAGFIPANLDLKLVDKVIGITNEEAISTARRLMEEEGILAGISSGA
                     AVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTEKELQQ"
     gene            8356..8613
                     /gene="ptsH"
                     /locus_tag="JN125_002923"
     CDS             8356..8613
                     /gene="ptsH"
                     /locus_tag="JN125_002923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003038086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocarrier protein Hpr"
                     /protein_id="HAY8872628.1"
                     /translation="MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASA
                     KSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE"
     gene            8658..10385
                     /gene="ptsI"
                     /locus_tag="JN125_002924"
     CDS             8658..10385
                     /gene="ptsI"
                     /locus_tag="JN125_002924"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate-protein phosphotransferase
                     PtsI"
                     /protein_id="HAY8872629.1"
                     /translation="MISGILASPGIAFGKALLLKEDEIVIDRKKISADQVDQEVVRFL
                     SGRAKASAQLETIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALIKDKHMTADA
                     AAHEVIEGQASALEELDDEYLKERAADVRDIGKRLLRNILGLKIIDLSAIQDEVILVA
                     ADLTPSETAQLNLKKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYL
                     ILDAVNNQVYVNPTNEVIDKMRAVQEQVASEKAELAKLKDLPAITLDGHQVEVCANIG
                     TVRDVEGAERNGAEGVGLYRTEFLFMDRDALPTEEEQFAAYKAVAEACGSQAVIVRTM
                     DIGGDKELPYMNFPKEENPFLGWRAIRIAMDRKEILRDQLRAILRASAFGKLRIMFPM
                     IISVEEVRALRKEIEIYKQELRDEGKAFDESIEIGVMVETPAAATIARHLAKEVDFFS
                     IGTNDLTQYTLAVDRGNDMISHLYQPMSPSVLNLIKQVIDASHAEGKWTGMCGELAGD
                     ERATLLLLGMGLDEFSMSAISIPRIKKIIRNTNFEDAKVLAEQALAQPTTDELMTLVN
                     KFIEEKTIC"
     gene            10426..10935
                     /gene="crr"
                     /locus_tag="JN125_002925"
     CDS             10426..10935
                     /gene="crr"
                     /locus_tag="JN125_002925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015833547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HAY8872630.1"
                     /translation="MGLFDKLKSLVSDDKKDTGTIEIIAPLSGEIVNIEDVPDVVFAE
                     KIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE
                     GFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLPGSVTVG
                     ETPVIRIKK"
BASE COUNT         2675 a         2829 c         2712 g         2750 t
ORIGIN      
        1 ttagctcagt tggtagagca gttgactttt aatcaattgg tcgcaggttc gaatcctgca
       61 cgacccacca atgtaaaaaa gcgccctaaa ggcgcttttt tactatctgc gatttgtaag
      121 attgattttt cttctcaagt tccttgttct tctaccgata ttacctcgta cagtgacgag
      181 gactgaacaa tggccactat ctcttcaact tcaattcctt ccatacaaac acagagtagt
      241 aacagggcat cacaaggtag cgatgttgct tcacaaatcg cgcggataag tcagcaaatc
      301 atcaaactca ctcaacaaat taaagagatt gtagacacta gcggcagtgc tgaagacaag
      361 caaaaacagg ccgaattgat tcaacagcaa atcaccctac tggaaacaca actggcgcag
      421 ttgcagaaac agcaggcaga aaaggcgcag gagaaagagc agcgtttgtc tctgaatgta
      481 tcccttctaa atcctgttga aaaaacgact catatcgata tctatatctg atacaacgga
      541 tccccttccc gaccagccat tagcgcattg ccctggtctc gtaccacgtc ccataacgct
      601 tcagcggcgg tggaaagtga acggttcttc ctgcgcacca gcatcaactg gcgttcaaca
      661 accggcgtaa tgcgctttac caccagtggg ctaccttcag gcaatggtag cgccagtgcg
      721 ggaagaatac tgatgccgat gcctgcggct accatcggga acagcgtcgc cggatgtcca
      781 atctcctgca caatattcgc ctgaatacca ttgcgcgcca gcgctgcgtc aatcagcggt
      841 cggctgcctg acgcgtaatc ctgcaacacc aatttcgctc cctgtaatgc ctgccagggt
      901 acataatctt ccacggccaa agcgctatcg cgatggcaaa gcagaaagaa aggctcggaa
      961 agaatcgctt cacattgcag atcgcccact gggcctggat cgatgacgat gccaaagtcg
     1021 acatctccct ggcgaatact ttccatcacc cactgctgcg gacgatcgtg caggacaaac
     1081 tgaatatctg gatagcggcg atggctttca gcaatgcatt gcggaataag atgcgcggaa
     1141 atggtctggc tggcagcgac ccgaactttt ccgctcagtt gttgccccat acgcccggta
     1201 tcgcgcaacg tgctgttaag ttcatccagc agtcgctcaa gacgcaaagc caactgctgc
     1261 cctgcatctg taagcaccac ttcacgcgtg gttctgtcca gcaggcgaac accagtatga
     1321 ttttccagct ccttcacact gtgacttact gccgactggc tcaagccgat acgctctcct
     1381 gcacgactaa aacttttctc ctgcgctact gtgacgaaaa cctttaattg ttttaaagaa
     1441 taattcatct gttttcttca tgaatggatg caataaatca attttatttc tcaaactgga
     1501 agaagcacaa tagaaccatc gatcatctgg agtctttatg aaactttttc gtatcctcga
     1561 tcctttcacc ttaaccctga tcacggtggt gttgctggcc tctttctttc cggccagagg
     1621 cgatttcgtc cccttctttg aaaatctgac caccgcagct attgccctgc tgttctttat
     1681 gcacggcgcg aagttgtcgc gtgaggcgat tattgctggc ggtggtcact ggcgactgca
     1741 tttgtgggta atgtgcagca ccttcgtgct gtttccgatt ctgggtgtac tgtttgcctg
     1801 gtggaaaccg gtaaatgtcg acccgatgct ctactccggt tttctctact tgtgcactct
     1861 cccggctacc gtgcagtctg caatcgcctt cacgtcaatg gcgggcggta acgtcgcggc
     1921 ggcggtttgt tctgcgtcag catccagcct gctggggatt ttcctttcac cattgctggt
     1981 tggtctggtg atgaatgttc acggtgcagg gggcagcctt gagcaggtcg gtaaaattat
     2041 gctgcaactg ctgctgccgt ttgtgttggg gcatctttcc cggccgtgga ttggtgactg
     2101 ggtgtcgcgc aataaaaaat ggattgcgaa aactgaccag acgtccattc tgttggtggt
     2161 ttatacagcg ttcagcgaag ccgtcgttaa tggtatctgg cataaagttg gctggggatc
     2221 attgctgttt atcgtggtgg tcagctgcgt tcttctggct atcgtgattg tagttaacgt
     2281 ctttatggca cgccgactgg gcttcaataa ggcagatgaa attactatcg tcttttgtgg
     2341 ttcgaaaaag agtctggcaa atggcatccc gatggcaaac attctgttcc ccacatcggt
     2401 gatcggtatg atggtgctgc ccctgatgat tttccatcag atccaattga tggtctgtgc
     2461 ggtgctggcg cgtcgataca aacgccagac cgaacagtta caggcgcagc aggaaagcag
     2521 cgccgataaa gcttaaagcg gacgcttcag gggctggacc agttgcgtca gcccctcggt
     2581 tttaatcagc agcgtgattt gcattagctc accgagcttc cctgccggga actcatcttt
     2641 gcgggcaaac cacagcagat actcctccgg caggtcgatt aagcgacgcc ctttgtattt
     2701 gccaaacggc attatcgtat tggctatttc aatcagctgc tctttttcca tctcagctac
     2761 ccagcaaacg cagcatttcc gcttcgtcga tgacttcaat gcccagttcc tgcgccttcg
     2821 ccagtttaga tcctgcagct tcacccgcaa tcaccagatc ggttttcttc gacacgctgc
     2881 ccgcgacttt cgcgcccagt tcgaccagtc gagctttagc gtcatcacgc gacatctggc
     2941 ttaagctgcc cgtaagcacc acggttttac cagcaaacgg gctgtcaatc tcttccgcgt
     3001 tgataacgat cggcgcaggc cagtgaacac cttccgccaa cagctcgctg atgacattgc
     3061 ggttgctttc ttcggcaaag aagttgtgaa cgtgggatgc aacgacaatg ccaacatcag
     3121 gcaccttttg cagctcttca atcgaagcgg cttccagcgc ttccagcgtg ccgaaatatg
     3181 ccgccagacc tgctgcggtg gcctcgccga cttcacggat gccaagtgca tagaggaagc
     3241 gagcaaaggt ggtttctttc gctttttcca gcgcgttaac cacgttttgt gccgattttg
     3301 gccccatacg ctccagtccg gtcagtttgc ctgcggtgag tttgaacaga tctgccggag
     3361 tgtggacata ttctttttca accagctgat cgatgatttt gtcgcccatt ccgtcaacat
     3421 ccatagcacg gcgggaaaca aagtgtttca gcgactcttt acgctgcgca ccgcaaatca
     3481 ggccaccggt acagcgggca accgcttcac cttccacacg ctcaacgtca gaaccacata
     3541 ccggacaatg cgtcgggaat acaacctcac gggtatcttc cgggcgttca gaaagcacga
     3601 cgttaaccac ctgcgggatc acgtcgccag cgcggcgaat caccacttta tcgccaatgc
     3661 gtaaaccaag acgttcgatt tcatccgcat tgtgtaaggt tgcgttactc accagcacgc
     3721 cagcaacatg gacaggttcc agacgcgcaa caggcgtaat cgcgccagta cgcccaacct
     3781 gaaactcgac gtcacgcaca aaggtcatct gctcctgcgc cgggaattta aacgctaccg
     3841 cccagcgcgg ggcacgcgca acaaagccaa gctgctcctg ctgttccagt gagttgacct
     3901 taatcaccac gccgtcgata tcaaagccca gcgtcgggcg gtcttcttcc actttgtgat
     3961 agaacgccag cacttcttcc gccgattcac aaagcgttac ccgatcgctg accggcaacc
     4021 cccacttttt aaattgcagt aaacggccaa gatgagtatc cggcagctcg ccaccttcca
     4081 gaacaccaac gccatagcag aaaaaagtga gcggtcgctt cgctgtaata cgcggatcaa
     4141 gctgacgcag tgaaccagct gccgcattac gtgggttagc aaaaactttc ccgcccgtgc
     4201 gtcgcgcatc ttcgttaatc ttttcgaacc ccgcctgcgg caggaacact tcaccacgca
     4261 cttccagacg cgccgggata ttctctccat gcagcttcag cggaatggcg cgaatagtac
     4321 gcacattaga cgtgatatct tccccggtgg tgccatcgcc acgggtcgcg gcactgacta
     4381 aaacgccatt ttcatacaga atactgacgg caaggccatc cagcttcagc tcacagcacc
     4441 aggtgacttt ctcgttgttt ttcagacggt cctgcacacg tttgttgaaa gcaagaaagc
     4501 tttcttcatc aaaaacgtta tccagtgaca gcattggtac ttcatggcgt atctggctga
     4561 aagccgccag cggcgcagca cctacacgtt gggtaggcga atcaggcgta atcagttctg
     4621 gatgtttagt ttccagctcg cgcagttcgc gcatcagcct gtcgtattca gcgtcgggaa
     4681 tttccggcgc atccatcaca tgataaagag attcatgatg gcgaagcgtc attcgcagtt
     4741 ctgtcagttg ttgttcgatt gattccatat cgcaccatca atgctaaaaa cccccgacaa
     4801 gcgggggttc gaagaggagt taatttgcct taagtgtatc aggcgttggc gtctttgact
     4861 tcgcggatga tgtcctggta ctcgcgcaat ttctgcggag tcatcatacg gcgctgatcg
     4921 tcaagcacga caccgcccac ttcatcggca atatgctgcg cagattgcag catcagcttg
     4981 aagttctgca gctcgtcacc gtaagacggt acctgcataa agatagtgac acccggagta
     5041 gtgaaatcct tcatttcagg atcaaaggtt cccggtttca ccatattcgc caggctgaat
     5101 aacgccgggc cgctgccatc cgggctaaga tgacgatggt aaatattcat atcgccaaaa
     5161 atgaagcccg cttgttgaat gctgttaaga agcagttcac cgtttagctc gctaccgtga
     5221 tgcgccgcga cgttcatgat aatcaccgct tctttgcgct tcggtttatc cataactgga
     5281 gccggttccg ctacaggctc aggctgtggt gccgctacgg gttctgcagg ctggaaagcc
     5341 tgttgtgccg gttgcggtgc tgaatgcaca ggctgcggcg ctggcgcgac ctgtggcgaa
     5401 actggctgct gcaacggctg ttcaggctgc ggctgatagg caggctgctg caccggctgc
     5461 gctggacgcg gagcatgttg cggcggtacc tgcgcttcag gcggctgctg gaccggttga
     5521 cgcggctgcg cagacgcata aggcggttgg tactggtgtt gcggcgacgg acgagcagcc
     5581 tcatgctcct gagcgttagc cggggcatga ttcacgcggt gaacacgaac ctcaccaacg
     5641 ccctcatcat cttcgacatc ctcgtcataa taatcgtcgt cacgttttga cttcattcgt
     5701 tttaatggcc gatcgcggaa catagaagat cgttctttac ggctggtcca gaaaccatgt
     5761 accagtaaag cgattatggc gatcgcgcca acaatgatta atatcagacg caaatcctgc
     5821 atcattatat tctctgttgt tctaacacct tgccaccacg gcaaacattt actcactaag
     5881 agtatttgcc gattacctca agtgcaagtg cactattaac tttcacagca caaagataga
     5941 tgaaatcgtg ctttttgctg ttttttcgaa catatcctaa ctgtccattg cgcaattacc
     6001 cggtaaaata cgcagaattt tcctgggatt ggtcaaaagg agctcatcct gattatggtt
     6061 tcatcattca catctgcccc acgcagcggt ttttactatt ttgcgcaagg ctggaagctc
     6121 gtctcgcaac ctgggattcg gcgtttcgtt attttaccgc tgctggtcaa tattttgttg
     6181 atggggggcg cattctggtg gctctttaca cagctcgatg tctggatccc gactctcatg
     6241 agttacgttc cggactggct acaatggctg agttatctgt tgtggcctct ggctgtcatc
     6301 tctgtgctgt tagtgtttgg ctatttcttc tccacgattg ctaactggat tgccgctccg
     6361 tttaacggtt tattggctga acaactggaa gcacgattga ctggcgctac accgccagat
     6421 accgggattt tcggtatcat gaaagatgtg ccgcgaatca tgaaacgcga atggcaaaaa
     6481 tttgcctggt atctgccgcg cgcaattgta ttactaattc tttacttcat ccctggtatt
     6541 gggcaaaccg tcgcgccggt actgtggttc ctgtttagcg cctggatgtt agccatccag
     6601 tattgcgatt accccttcga taaccacaaa gtgccgttta aagagatgcg caccgccctg
     6661 cgcacacgca aaatcaccaa tatgcagttt ggtgctttaa ccagcctgtt tacgatgatc
     6721 ccgctgctta atctgttcat catgcccgtt gccgtttgtg gcgcgacggc gatgtgggtc
     6781 gattgctatc gcgataaaca cgcgatgtgg cggtaacaat ctaccggtta ttttgtaaac
     6841 cgtttgtgtg aaacaggggt ggcttatgcc gccccttatt ccatcttgca tgtcattatt
     6901 tcccttctgt atatagatat gctaaatcct tacttccgca tattctctga gcgggtatgc
     6961 tacctgttgt atcccaattt catacagtta aggacaggcc atgagtaaga tttttgaaga
     7021 taactcgctg actatcggtc acacgccgct ggttcgcctg aatcgcatcg gtaacggacg
     7081 cattctggcg aaggtggaat ctcgtaaccc cagcttcagc gttaagtgcc gtatcggtgc
     7141 caacatgatt tgggatgccg aaaagcgcgg cgtgctgaaa ccaggcgttg aactggttga
     7201 accgaccagc ggtaataccg ggattgcact ggcctatgta gctgccgctc gcggttacaa
     7261 actcaccctg accatgccag aaaccatgag tattgaacgc cgcaagctgc tgaaagcgtt
     7321 aggtgcaaac ctggtgctga cggaaggtgc taaaggcatg aaaggcgcaa tccaaaaagc
     7381 agaagaaatt gtcgccagca atccagagaa atacctgctg ctgcaacaat tcagcaatcc
     7441 ggcaaaccct gaaattcacg aaaaaaccac cggtccggag atctgggaag ataccgacgg
     7501 tcaggttgat gtatttattg ctggcgttgg gactggcggt acgctgactg gcgtcagccg
     7561 ctacattaaa ggcaccaaag gcaagaccga tcttatctct gtcgccgttg agccaaccga
     7621 ttctccagtt atcgcccagg cgctggcagg tgaagagatt aaacctggcc cgcataaaat
     7681 tcagggtatt ggcgctggtt ttatcccggc taacctcgat ctcaagctgg tcgataaagt
     7741 cattggcatc accaatgaag aagccatttc taccgcccgt cgtctaatgg aagaagaagg
     7801 tattcttgca ggtatctctt ctggagcagc tgttgccgcg gcgttgaaac tacaagaaga
     7861 tgaaagcttt accaacaaga atattgtggt tattctacca tcatcgggtg agcgttattt
     7921 aagcaccgca ttgtttgccg atctcttcac tgagaaagaa ttgcaacagt aatgccagct
     7981 tgttaaaaat gcgtaaaaaa gcaccttttt aggtgctttt ttgtggcctg cttcaaactt
     8041 tcgcccctcc tggcattgat tcagcctgtc ggaactggta tttaaccaga ctaattattt
     8101 tgatgcgcga aattaatcgt tacaggaaaa gccaaagctg aatcgatttt atgatttggt
     8161 tcaattcttc ctttagcggc ataatgttta atgacgtacg aaacgtcagc ggtcaacacc
     8221 cgccagcaat ggactgtatt gcgctcttcg tgcgtcgcgt ctattaaaaa ctggcgctaa
     8281 caatacaggc taaagtcgaa ccgccaggct agactttagt tccacaacac taaacctata
     8341 agttggggaa atacaatgtt ccagcaagaa gttaccatta cagctccgaa cggtctgcac
     8401 acccgccctg ctgcccagtt tgtaaaagaa gctaagggct tcacttctga aattactgtg
     8461 acttccaacg gcaaaagcgc cagcgcgaaa agcctgttta aactgcagac tctgggcctg
     8521 actcaaggta ccgttgtgac tatctccgca gaaggcgaag acgagcaaaa agcggttgaa
     8581 catctggtta aactgatggc ggaactcgag taatttcccg ggttctttta aaaatcagtc
     8641 acaagtaagg tagggttatg atttcaggca ttttagcatc cccgggtatc gctttcggta
     8701 aagctctgct tctgaaagaa gacgaaattg tcattgaccg gaaaaaaatt tctgccgacc
     8761 aggttgatca ggaagttgta cgttttctga gcggtcgtgc caaggcatca gcccagctgg
     8821 aaacgatcaa aacgaaagct ggtgaaacgt tcggtgaaga aaaagaagcc atctttgaag
     8881 ggcatattat gctgctcgaa gatgaggagc tggagcagga aatcatagcc ctgattaaag
     8941 ataaacacat gacagctgac gcagctgctc atgaagttat cgaaggtcag gcttctgccc
     9001 tggaagagct ggatgatgaa tacctgaaag aacgtgcggc tgacgtacgt gatatcggta
     9061 agcgcctgct gcgcaacatc ctgggcctga agattatcga cctgagcgcc attcaggatg
     9121 aagtcattct ggttgccgct gacctgacgc cgtccgaaac cgcacagctg aacctgaaga
     9181 aggtgctggg tttcatcacc gacgcgggtg gccgtacttc ccacacctct atcatggcgc
     9241 gttctctgga actgcctgct atcgtgggta ccggtagcgt cacctctcag gtgaaaaatg
     9301 acgactatct gattctggat gccgtaaata atcaggttta cgtcaatcca accaacgaag
     9361 ttattgataa aatgcgcgct gttcaggagc aagtggcttc tgaaaaagca gagcttgcta
     9421 aactgaaaga tctgccagct attacgctgg acggtcacca ggtagaagta tgcgctaaca
     9481 ttggtacggt tcgtgacgtt gaaggtgcag agcgtaacgg cgctgaaggc gttggtctgt
     9541 atcgtactga gttcctattc atggaccgcg acgcgctgcc cactgaagaa gaacagtttg
     9601 ctgcttacaa agcagtggct gaagcgtgtg gctcgcaggc ggttatcgtt cgtaccatgg
     9661 acatcggcgg cgacaaagag ctgccataca tgaacttccc gaaagaagag aacccgttcc
     9721 tcggctggcg cgctatccgt atcgcgatgg atcgtaaaga gatcctgcgc gatcagctcc
     9781 gcgctatcct gcgtgcctcg gctttcggta aattgcgcat tatgttcccg atgatcatct
     9841 ctgttgaaga agtgcgtgca ctgcgcaaag agatcgaaat ctacaaacag gaactgcgcg
     9901 acgaaggtaa agcgtttgac gagtcaattg aaatcggcgt aatggtggaa acaccggctg
     9961 ccgcaacaat tgcacgtcat ttagccaaag aagttgattt ctttagtatc ggcaccaatg
    10021 atttaacgca gtacactctg gcagttgacc gtggtaatga tatgatttca cacctttacc
    10081 agccaatgtc accgtccgtg ctgaacttga tcaagcaagt tattgatgct tctcatgctg
    10141 aaggcaaatg gactggcatg tgtggtgagc ttgctggcga tgaacgtgct acacttctgt
    10201 tgctggggat gggtctggac gaattctcta tgagcgccat ttctatcccg cgcattaaga
    10261 agattatccg taacacgaac ttcgaagatg cgaaggtgtt agcagagcag gctcttgctc
    10321 aaccgacaac ggacgagtta atgacgctgg ttaacaagtt cattgaagaa aaaacaatct
    10381 gctaatccac gagatgcggc ccaatttact gcttaggaga agatcatggg tttgttcgat
    10441 aaactgaaat ctctggtttc cgacgacaag aaggataccg gaactattga gatcattgct
    10501 ccgctctctg gcgagatcgt caatatcgaa gacgtgccgg atgtcgtttt tgcggaaaaa
    10561 atcgttggtg atggtattgc tatcaaacca acgggtaaca aaatggtcgc gcctgtagac
    10621 ggtaccattg gtaaaatctt tgaaaccaat cacgcgttct ctatcgaatc tgatagcggc
    10681 gttgaactgt tcgtccactt cggtatcgac accgttgaac tgaaaggcga aggcttcaag
    10741 cgtattgcag aagaaggtca gcgcgtgaaa gttggcgata ctgtcattga atttgatctg
    10801 ccgctgctgg aagagaaagc caagtctacc ctgactccgg ttgttatctc caacatggac
    10861 gaaatcaaag aactgatcaa actgcccggt agcgtaaccg tgggtgaaac cccggttatc
    10921 cgcatcaaga agtaattctt gccgcagtga aaaatggcgc ccatcg
//
LOCUS       DADMHM010000131        10896 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.132, whole genome shotgun sequence.
ACCESSION   DADMHM010000131 DADMHM010000000
VERSION     DADMHM010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10896)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10896)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10896
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.132"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(228..2087)
                     /gene="gss"
                     /locus_tag="JN125_002926"
     CDS             complement(228..2087)
                     /gene="gss"
                     /locus_tag="JN125_002926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutathionylspermidine
                     amidase/synthase"
                     /protein_id="HAY8872631.1"
                     /translation="MSKGTTSQDAPFGTLLGYAPGGVAIYSSDYSSLDPQEYEDDAVF
                     RSYIDDEYMGHKWQCVEFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQ
                     AFPNGSPRAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRIAEQNVIHSPLPQGQQ
                     WTRELEMVVENGCYTLKDTFDDTTILGWMIQTEDTEYSLPQPEIAGELLKISGARLEN
                     KGQFDGKWLDEKDPLQNAYVQANGQVINQDPYHYYTITESAEQELIKATNELHLMYLH
                     ATDKVLKDDNLLALFDIPKILWPRLRLSWQRRRHHMITGRMDFCMDERGLKVYEYNAD
                     SASCHTEAGLILERWAEQGYKGNGFNPAEGLINELAGAWKHSRARPFVHIMQDKDIEE
                     NYHAQFMEQALHQAGFETRILRGLDELGWDAAGQLIDGEGRLVNCVWKTWAWETAFDQ
                     IREVSDREFAAVPIRTGHPQNEVRLIDVLLRPEVLVFEPLWTVIPGNKAILPILWSLF
                     PHHRYLLDTDFTVNDELVKTGYAVKPIAGRCGSNIDLVSHHEEVLDKTSGKFAEQKNI
                     YQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGDESLVIKKESDIEPLIVVKK"
     gene            2292..3158
                     /gene="yghU"
                     /locus_tag="JN125_002927"
     CDS             2292..3158
                     /gene="yghU"
                     /locus_tag="JN125_002927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311901.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-dependent disulfide-bond
                     oxidoreductase"
                     /protein_id="HAY8872632.1"
                     /translation="MTDNTYQPAKVWTWDKSAGGAFANINRPVSGPTHEKTLPVGKHP
                     LQLYSLGTPNGQKVTIMLEELLALGVTGAEYDAWLIRIGDGDQFSSGFVEVNPNSKIP
                     ALRDHTHNPPIRVFESGSILLYLAEKFGYFLPQDLAKRTETMNWLFWLQGAAPFLGGG
                     FGHFYHYAPVKIEYAINRFTMEAKRLLDVLDKQLAQHKFVAGDEYTIADMAIWPWFGN
                     VVLGGVYDAAEFLDAGSYKHVQRWAKEVGERPAVKRGRIVNRTNGPLNEQLHERHDAS
                     DFETNTEDKRQG"
     gene            complement(3281..3529)
                     /gene="hybG"
                     /locus_tag="JN125_002928"
     CDS             complement(3281..3529)
                     /gene="hybG"
                     /locus_tag="JN125_002928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation factor HybG"
                     /protein_id="HAY8872633.1"
                     /translation="MCIGVPGQVLAVGEDIHQLAQVEVCGIKRDVNIALICEGNPADL
                     LGQWVLVHVGFAMSIIDEDEAKATLDALRQMDYDITSA"
     gene            complement(3542..3883)
                     /gene="hypA"
                     /locus_tag="JN125_002929"
     CDS             complement(3542..3883)
                     /gene="hypA"
                     /locus_tag="JN125_002929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HAY8872634.1"
                     /translation="MHELSLCQSAVEIIQRQAEQHDVKRVTAVWLEIGALSCVEESAV
                     RFSFEIVCHGTVAQGCDLHIVYKPAQAWCWDCSQVVEIHQHDAQCPLCHGERLRVDTG
                     DSLIVKSIEVE"
     gene            complement(3876..4364)
                     /gene="hybE"
                     /locus_tag="JN125_002930"
     CDS             complement(3876..4364)
                     /gene="hybE"
                     /locus_tag="JN125_002930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase-2 assembly chaperone"
                     /protein_id="HAY8872635.1"
                     /translation="MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSD
                     FTLFEGQWTGCVITPWMLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGV
                     SQYLSCSLMSPLSHSMSIEEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRSGE
                     NA"
     gene            complement(4357..4851)
                     /locus_tag="JN125_002931"
     CDS             complement(4357..4851)
                     /locus_tag="JN125_002931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HAY8872636.1"
                     /translation="MRILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTA
                     GMELLGDMANRDHLIIADAIVSKKNTPGTMMILRDEEVPALFTNKISPHQLGLADVLS
                     ALRFTGEFPKKLTLVGVIPESLEPHIGLTPTVEAMIEPALEQVLAALRESGVEAIPRE
                     AIHD"
     gene            complement(4851..6554)
                     /gene="hybC"
                     /locus_tag="JN125_002932"
     CDS             complement(4851..6554)
                     /gene="hybC"
                     /locus_tag="JN125_002932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 2 large subunit"
                     /protein_id="HAY8872637.1"
                     /translation="MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEI
                     VKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTH
                     DHIVHFYQLSALDWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVA
                     SGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNL
                     AVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRG
                     KGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHS
                     WYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRE
                     STQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNI
                     GKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGP
                     RNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV
                     L"
     gene            complement(6551..7729)
                     /gene="hybB"
                     /locus_tag="JN125_002933"
     CDS             complement(6551..7729)
                     /gene="hybB"
                     /locus_tag="JN125_002933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase cytochrome b subunit"
                     /protein_id="HAY8872638.1"
                     /translation="MSHDPQPLGGKIISKPVMIFGPLIVICMLLIVKRLVFGLGSVSD
                     LNGGFPWGVWIAFDLLIGTGFACGGWALAWAVYVFNRGQYHPLVRPALLASLFGYSLG
                     GLSITIDVGRYWNLPYFYIPGHFNVNSVLFETAVCMTIYIGVMALEFAPALFERLGWK
                     VSLKRLNKVMFFIIALGALLPTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSLLTAF
                     IMGFSIVIFEGSLVQAGLRGNGPDEKSLFVKLTNTISVLLAIFIVLRFGELIYRDKLS
                     LAFAGDFYSVMFWIEVLLMLFPLVVLRVAKLRNDSRMLFLSALSALLGCATWRLTYSL
                     VAFNPGGGYAYFPTWEELLISIGFVAIEICAYIVLIRLLPILPPLKQNDHNRHEASKA
                     "
     gene            complement(7719..8705)
                     /gene="hybA"
                     /locus_tag="JN125_002934"
     CDS             complement(7719..8705)
                     /gene="hybA"
                     /locus_tag="JN125_002934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 2 operon protein HybA"
                     /protein_id="HAY8872639.1"
                     /translation="MNRRNFIKAASCGALLTGALPSVSHAAAENHPPIPGSLGMLYDS
                     TLCVGCQACVTKCQDINFPERNPQGEQTWSNNDKLSPYTNNIIQVWTSGTGVNKDQEE
                     NGYAYIKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVP
                     KYDYNNPFGALHKCELCNQKGVERLDKGGLPGCVEVCPAGAVIFGTREELMAEAKKRL
                     ALKPGSEYHYPRQTLKSGDTYLHTVPKYYPHLYGEKEGGGTQVLVLTGVPYENLDLPK
                     LDDLSTGARSENIQHTLYKGMMLPLAVLAGLTVLVRRNTKNDHHDGGDDHES"
     gene            complement(8708..9826)
                     /gene="hybO"
                     /locus_tag="JN125_002935"
     CDS             complement(8708..9826)
                     /gene="hybO"
                     /locus_tag="JN125_002935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase 2 small subunit"
                     /protein_id="HAY8872640.1"
                     /translation="MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVT
                     NPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENK
                     HNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGAAAIIAIGSCSAW
                     GGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKN
                     RPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQ
                     FCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSA
                     GAIGLLGGVVGLVAGVSVMAVRELGRQQKKDNADSRGE"
     gene            complement(10015..10302)
                     /locus_tag="JN125_002936"
     CDS             complement(10015..10302)
                     /locus_tag="JN125_002936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2623 domain-containing protein"
                     /protein_id="HAY8872641.1"
                     /translation="MNNHFGKGLMAGLKATHADSAVNVTKFCADYKRGFVLGYSHRMY
                     EKTGDRQLSAWEAGILTRRYGLDKEMVMDFFRENNSCSTLRFFMAGYRLEN"
     gene            complement(10421..>10896)
                     /locus_tag="JN125_002937"
     CDS             complement(10421..>10896)
                     /locus_tag="JN125_002937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311911.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HAY8872642.1"
                     /translation="GYPGNDDKGRELQQQVDPTKLMNDFFAAIEFMQRYPQATGKVGI
                     TGFCYGGGVSNAAAVAYPELACAVPFYGRQAPTADVAKIEAPLLLHFAELDTRINEGW
                     PAYEAALKANNKVYEAYIYPGVNHGFHNDSTPRYDKSAADLAWQRTLKWFDKYLS"
BASE COUNT         2650 a         2988 c         2701 g         2557 t
ORIGIN      
        1 caaagtgaaa tatcattttt taacgataaa aagagtgtta tttcttgtgt atcagacaat
       61 aagcattcat tcaaaacctt tagaaataat caaaacacag gtattccact ggttaatata
      121 ttcacatatg aaatgaataa atattagaac atataaatat tgaatatttt gattaatccc
      181 cgtactgatt attcttcata atcagtacgg ggttgctaca acatgtatta ctttttcacc
      241 acaattaacg gttcaatatc actctctttt ttgatgacca gtgattcatc accgcgcaaa
      301 cacgtcccac cgtagttgcc gcccacggtg aaggtacata cctgaatgta tttaccgtcc
      361 actttcggca aacaccacag ttgctgatag atgtttttct gctcggcaaa tttaccgctg
      421 gttttgtcca gcacctcttc atgatggctg accaggtcga tattgctacc acagcgaccg
      481 gcaatcggtt tcactgcgta acctgttttc accaattcat cattaacagt gaaatcggta
      541 tccagcaggt aacgatggtg cgggaacagc gaccagagga tcggcagaat cgctttgttg
      601 ccggggatca ccgtccacag cggctcaaag actagcactt ccgggcgcag caatacgtcg
      661 ataagacgca cttcgttttg cggatgaccg gtacggattg gcaccgcagc aaactcacgg
      721 tcgctaactt cacgaatctg gtcaaacgcg gtttcccacg cccaggtttt ccacacgcag
      781 ttaaccagtc gcccttcccc atcaatcagt tgcccggcag catcccagcc cagttcatcc
      841 aatccacgca agatacgcgt ttcaaagccc gcctggtgca gcgcctgctc cataaactgc
      901 gcgtgatagt tttcctcgat atctttgtcc tgcatgatat ggacaaacgg acgtgcacga
      961 ctgtgtttcc aggcaccagc caattcgtta atcagccctt ccgccggatt gaagccgttg
     1021 cctttatagc cctgctccgc ccaacgttcg aggatcaagc ccgcttcggt atgacaggag
     1081 gcggagtcgg cgttgtactc gtaaaccttc aggccacgct catccatgca gaaatccata
     1141 cgaccagtga tcatatggtg acggcgacgc tgccaggaga gacgcaaacg tggccagagg
     1201 attttcggga tgtcgaacag cgccagcagg ttgtcatctt tcagtacctt gtcggttgcg
     1261 tgaagataca tcaggtgcag ctcgttggtg gctttaatta gctcctgctc ggcactctcg
     1321 gtaatggtgt agtaatgata aggatcctga ttgatcacct gaccgttggc ctgcacatag
     1381 gcgttttgca gcggatcttt ttcatccagc catttaccgt caaactggcc tttgttttcc
     1441 aggcgcgctc cgctgatttt cagcagctcg cctgcaattt ccggctgcgg taagctgtat
     1501 tcagtatctt ccgtctggat catccagccc agaatggtgg tgtcatcaaa agtgtctttc
     1561 agggtatagc agccgttttc gaccaccatc tccagctcac gcgtccactg ttgcccttgc
     1621 ggcaacgggg aatgaatcac gttctgttcc gcaatacgga ctttgttgcc atgcaattgg
     1681 gtaatgatgg cgacatggcc agtgtcttta aattcaccgc ctttatccca gataagaagc
     1741 gcacccgcga ccggcgcacg cggcgagccg ttaggaaatg cctgcaatgg caggatgttg
     1801 tcattaacca cttctcgcag gaagcgcagc gagaaaatct cccacgccat acccacgtca
     1861 gtaaagacca caccgtaatt cagaaagaga aaacggcgag caaattcaac gcattgccac
     1921 ttgtggccca tatattcgtc gtcgatatag ctacggaata cggcgtcatc ttcgtattcc
     1981 tgcgggtcga gagaactgta atctgaagag tagattgcta ccccacctgg ggcgtagccc
     2041 aataatgtcc cgaacggggc atcctggctg gtcgttcctt tgctcatcac tttaccttta
     2101 acaatacaac ctaagcagtt ggcgtaattg ttgtgctctg attacctgct cagcgacatt
     2161 aaccggacag aggtcagact aatcatacac ctcatcgcag cggctggcgc aaagggttaa
     2221 aaaattcaca ttctgtacag caagtgacct gccacactgc ttcaacacta ccactcagaa
     2281 ggcaactcac tatgacagac aatacttatc agcccgcgaa agtctggacg tgggataaat
     2341 ccgctggcgg cgcgttcgcc aatatcaatc gcccggtttc tggtccgacg catgaaaaaa
     2401 cgctgcccgt tggcaaacac ccattgcaac tttattcgct gggaacgccg aacggtcaga
     2461 aagtaacgat tatgcttgag gagctgctgg cgctgggcgt tactggtgca gagtacgacg
     2521 cctggctgat tcgtattggc gatggcgatc aattctccag cggctttgtc gaagtgaacc
     2581 caaactcgaa gatcccggcg ctgcgcgatc atacgcataa tccgccgatc cgtgtgtttg
     2641 aatctggttc gatcctgctt tatctggcgg agaaatttgg ctacttcctg ccgcaggatt
     2701 tggcaaagcg tactgaaacg atgaactggc tgttctggtt acagggcgcg gcaccgttcc
     2761 tcggcggtgg ttttggtcac ttttaccatt acgcaccggt aaagattgag tacgccatca
     2821 accgctttac catggaagcc aaacgtctgc tcgacgtgct ggataagcaa ctggcgcagc
     2881 ataagtttgt tgcgggcgat gagtacacca ttgcggatat ggcgatttgg ccgtggtttg
     2941 gcaacgtggt gttaggtggt gtgtatgatg ccgctgagtt tcttgatgcg ggcagttata
     3001 agcatgtaca acgctgggcg aaagaagtag gcgaacgtcc ggcggtgaaa cgtgggcgta
     3061 ttgttaaccg caccaacgga ccgctgaatg agcagttgca tgagcgccat gacgccagtg
     3121 atttcgagac gaatacggaa gataagcgtc aggggtaagg gttggtgttc gtcgcagcaa
     3181 gccatccagg ccggataagg cgttcacgcc gcatccggca atcgtgcaca atgcctgatg
     3241 cgacgctgcc gcgtcttatc aggcctacga aagctaatca tcacgcgctg gtaatgtcgt
     3301 aatccatttg gcgcagtgcg tctaatgtgg ctttggcttc atcttcgtcg atgatgctca
     3361 tggcaaatcc gacgtgtacc agcacccact ggcccagtag atcggctggg ttaccttcac
     3421 aaatcagggc gatattcacg tcgcgcttga taccacatac ttcaacctgc gcaagctggt
     3481 gaatatcttc accgacagcc agcacctggc ctggaacgcc aatacacatt attaactccg
     3541 gttattcaac ttcaatactt ttgacgatca gcgaatcgcc ggtatcgaca cgcaaccgct
     3601 cgccgtgaca gagcggacac tgcgcatcgt gctgatgaat ctccaccacc tggctgcaat
     3661 cccagcacca ggcctgggcg ggtttataga cgatatgtaa atcgcaccct tgcgccaccg
     3721 ttccgtggca gacaatttca aaactaaaac ggacggcgct ctcctcaacg caggagagcg
     3781 cgccaatttc cagccacacg gcggtgacgc gcttaacatc gtgctgctcc gcctgccgtt
     3841 ggataatttc aacggcgctc tggcaaagcg acaactcatg cattttcgcc actcctgcga
     3901 ccaaacagca gggcgcgacg ccctgcgtgt ggtacatccg gattcgtgac tggcagcgaa
     3961 aggatcattc gtgcgcagtc atccgtcagg cgttggccct cttcaatcga catactgtgc
     4021 gaaagcggtg acatcagcga acaggagagg tattgcgaaa caccgtccag ttcgccaacg
     4081 gtaaaggtca tggtgccata cggcagttgc agaccaattt tttcactcac tttgcgcagc
     4141 ggccagagtt gatccgggcc ggggaagata actgcactca gcatccacgg ggtgatcaca
     4201 caccccgtcc actgaccttc gaacagcgta aaatcagaaa catacaccgg cattgaagga
     4261 tgcagaaaag agagatcgtg catcgaacgc cgggcaattt cttcaaacgc tgcctgtact
     4321 tgcgccttcg gggaggtctg gaaacctgct atctcttcag tcatgaatcg cctcccgtgg
     4381 gatggcttcc acgcctgatt cgcgcagcgc agccagaacc tgctcaagcg caggttcaat
     4441 cattgcttca accgtcggcg ttaagccgat gtgtggctcc agcgattccg ggatcacgcc
     4501 gaccagggtc agctttttcg gaaactcacc ggtgaagcgc agggccgaca atacgtcggc
     4561 caggccaagc tgatgcggag agattttgtt ggtaaacaac gccggaactt cttcatcccg
     4621 caggatcatc atcgttcccg gcgtgttctt tttcgacaca atggcatccg caataatcag
     4681 atgatcgcga tttgccatgt cgccaagcag ctccattccc gccgtgccgc catcgaggat
     4741 ctcaacataa tccggcagaa tgtatcgttg ctctaacgct tcgacaatcc gcacaccgat
     4801 ggcttcatcg gtcagcaaaa tattgccgac ccctaagact aaaatacgca ttacagaacc
     4861 ttcactgaaa ccacttcgtt gccgtcggca tccactacgt gtaccgcaca ggccatgcac
     4921 gggtcgaagg agtgaatggt acgcaccact tccagcggtt tattcggatc agcaaccggt
     4981 gtacccacca gcgactgctc gtaaggaccg acgtcatcat tgaagttacg cggaccagag
     5041 ttccaggttg atggaacaac tgcctggtag ttactgataa taccgtcttt aataaccatc
     5101 cagtgagaga gcataccgcg cggcgcttcg aggaagccaa cacctttgaa ctcacccgtt
     5161 gccggaatgt tcggtttcac aaaggtggtg tgatcgcctt tgccgatatt ggtgatcagt
     5221 gcactgtatt gattttgcag gatatcctgc aattcgcagc agtgaacggt acgaccaata
     5281 atacggccca gcgtggagtg cagctgcgcc acttccagcg tgttgccagt cagtttctga
     5341 taaatcgcaa cgatttcatt cagtttgttc tgggtagatt cgcgacctgc cgccagtttc
     5401 accagcatat tagccagcgg acccacttct accgttttgc cgtagaaagt cggtgatttc
     5461 acccaggaat atttcccgtc gtcagaccaa ccatcataag ccggaatggt ggtaccttcc
     5521 cacggtgcct gcggcgcttc gtctttatac caggagtgct tcgcgctttc ctgaatgcct
     5581 ttgatcaggt attcatcgga atgagaagtg atcggacgat acgaggacag atccgcattc
     5641 tcaatgtagc cgcccgggaa caggaagctg ccgtttttac tgtcggtcgg gaattccggc
     5701 acgctcaggt agttcaccgc acctttaccg cgcgtcagcc attccgggta gaacgcggca
     5761 ataactgcgg tatcaacctt ataaacctgt tcaacaaagt cgctcagctt gtcgatgaaa
     5821 gacttgatgt acatcaggcg ctcaaggttc agcacgccca aaccgtcgag gttgatcggg
     5881 ttcgcgacac cacctaccgc caggttctga atgtgcggcg ttttaccgcc cagcagcgcc
     5941 acgacgcggt tagcgtcacg ctggcactcc agcgcctgca ggtagtgcgc taccgcaatc
     6001 aggttcactt ccggcggcag tttcatcgcc gggtgacccc agtagccatt ggcgaaaata
     6061 cccaactgac cgctggcaac cagatctttg atcttgttct gaactttagt gaactcttcc
     6121 ggactgttca gatgccaggt cgaaacgcct ttcagcattt cggaggcttt ggttgggtca
     6181 gcttgcagtg cagaagtgat gtccacccag tccagcgccg aaagctgata gaaatgaacg
     6241 atatggtcat gcgtggtgtg cgcagccaga atgatgttac ggatgtattg cgcgttaacc
     6301 ggaacgtcga tattcagcgc actttctgcc gcacgaacgg aagacagcgc gtgagtggta
     6361 gtacatacgc cacagatacg ttgcacaatc atccatgcat cgcgcggatc gcggtttttc
     6421 acgatctctt ccatgccgcg ccacatggta ccggaagccc atgctttcga aacgacgcca
     6481 ttttcgattt cgcaatcgat gcgtaaatgc ccctcaatac gggttaccgg atcaatagta
     6541 attctctggc tcatgctttg ctcgcctcat gacgattatg atcgttttgt tttaaaggag
     6601 gaagtatcgg cagtagacga atgagtacga tgtaagcgca aatctcaata gccacaaaac
     6661 caatagaaat caacagttct tcccaggtcg ggaagtaggc gtaaccgccg cccgggttga
     6721 atgccaccag cgaataggtc agacgccagg ttgcacaacc taacagtgcg ctcagtgctg
     6781 acaggaacag catgcgggaa tcattacgca gcttcgccac acgcagaacg accagcggga
     6841 agagcatcag caggacttca atccagaaca tcacggagta gaagtcaccg gcaaacgcta
     6901 acgacagctt gtcgcgatag ataagctcgc caaagcgcag cacgatgaaa atcgccagca
     6961 acacactgat ggtgttggtc agcttgacga acagactctt ttcatccgga ccgttgccac
     7021 gcagacccgc ctgcaccagc gaaccttcaa agatgacaat cgagaagccc atgatgaacg
     7081 ccgtcagcag cgagaacagc ggcaacattt catagctctg ccacaacgga tgcaccttgt
     7141 agcccgccga gatcatcagt gaccccattg aagactggtg catggtcggc aacagcgcgc
     7201 caagtgcaat gatgaagaac atcaccttgt tcagacgctt gagagaaacc ttccagccca
     7261 gacgttcaaa cagtgccgga gcaaactcca gtgccatcac gccgatatag atggtcatac
     7321 agaccgccgt ctcgaacagt accgagttca cgttgaagtg acccggaatg tagaagtacg
     7381 gcaggttcca gtagcgaccc acgtcgatag tgatcgacaa gccacccagt gagtaaccaa
     7441 acagactcgc caacagcgcc ggacgcacca gcggatggta ttgcccacgg ttaaagacgt
     7501 ataccgccca cgccagcgcc cagccgccac aggcaaagcc ggtaccaatc agcaggtcaa
     7561 acgcgatcca cacgccccac gggaagccgc cgttcaggtc agagacagag cccagaccga
     7621 acaccagacg cttcacaatc aggagcatac agatgacgat taacggtcca aaaatcatga
     7681 ccggtttact gatgattttg ccgcccagcg gttgtggatc atgactcatg atcgtctcct
     7741 ccgtcgtgat ggtcgttttt ggtgttgcga cgaaccagca cggttaagcc cgccagcaca
     7801 gccagtggta gcatcatgcc tttatacagg gtgtgttgaa tattttcgga acgcgcaccg
     7861 gtagaaagat cgtccagttt cggcaggtcg agattttcat aaggcacacc cgtcagtacc
     7921 agaacctgag taccgccgcc ctctttctcg ccgtacagat gcggataata tttcggcacc
     7981 gtatgcaggt aagtgtcgcc agatttcagc gtctgacgcg gatagtggta ttcgctgcca
     8041 ggcttcagcg ccagacgttt tttcgcctcc gccatcagct cttcacgcgt accgaaaatc
     8101 accgcgcccg ccgggcacac ttctacgcag ccaggcagac cgcctttatc gagacgttcc
     8161 acacctttct ggttgcacag ctcgcactta tgcagcgcac caaacgggtt gttgtagtcg
     8221 tacttcggca cgttgtacgg acaggcgacc atgcagtaac ggcaaccggt gcacacgtct
     8281 ttgtcgtaat ggacaatgcc ggttttcgga tcttttttca gtgcagagac cgggcacaca
     8341 gagacacagt tcggatcgac gcagtgcata cactgtttct taatgtacgc gtagccgttc
     8401 tcctcctggt ctttgttgac ccctgtgccg ctggtccaca cctgaatgat gttattggta
     8461 tacggcgaca gtttgtcgtt gttcgaccag gtctgttccc cttgcgggtt acgttcaggg
     8521 aagttgatat cctgacactt ggtgacgcaa gcctggcagc ctacgcacaa ggtcgagtcg
     8581 tacaacatcc ccagcgatcc cggaattggc gggtggtttt cagcagccgc atgactgaca
     8641 gacggcagcg cgcccgtcag caatgccccg caggaggctg ctttaataaa attacgtctg
     8701 ttcacggtta ttctccccgt gagtcagcgt tatctttctt ttgctgacga cccagttcac
     8761 gcaccgccat cacgctgaca ccggcaacca gcccaaccac accgccgagc aaaccaatag
     8821 cgcctgcaga gacgttgccg ccctctttag cgttaacatc cggtttctgt gaacgcggag
     8881 tctgattttc gacgttggca agctgatgga tgcctttatg gaagccgata ccttcttcgt
     8941 tacagccata gcatgggtga ccaatcgcta ccggccacac gccgccaaca tcgcagaatt
     9001 gcagcgttga gcagttgccg taagtttctg gccctttaca gccgaggtgg tacaggcacc
     9061 agccttcacg gtggccttca tcaccgaact ctttggcaaa acgaccagca tcgaagtgcg
     9121 ggcgacgttc gcagtgttcg tgaatcagac ggccataggc gaaggtcgga cgatttttgt
     9181 catccagttt cggcggtttg ccgtaagtga tgatgtgcgc aacggtcgcg aggaagttgt
     9241 gcgggttcgg cgggcagccc ggaatattga taacggtttt gcctggcaga acttcttgca
     9301 ggctgactgc gccagttggg ttaactccag ctgcggcaac accgccccac gcagagcagg
     9361 aaccgatagc gataatcgcg gctgcgcctt ctgccgcttt gcggatgtga tccacaatcg
     9421 gctcaccagc aaccatgcaa taaataccgt tatcttttaa tgggatggaa ccatccacaa
     9481 ccaacacata ctgccctttg tacttctcaa gtgcgttatg tttgttctct tcgacctgat
     9541 gaccgaaggc ggcggaaagc acttcgtgat actccagaga gatagtctcc agcacgaggt
     9601 tttctaccgt tggatgcgtt gcacgaagca gagattccgt acaaccggtg cactcctgcg
     9661 cgccaatcca gataactggc ggacgctgcg ggttagtaac cgattcggcc atctctgcag
     9721 cggctttgct acttaacccc atggtggcgg ctaatgctgc acaaagcttc atgaaatcac
     9781 gacggttaat gccgtgagaa tggatgaggg tgttatctcc agtcatttat agttattccg
     9841 ttgcgaagac ctggcatata ttttgcttca atcgcaaaat caataatgcg atcgatgcgc
     9901 catttaccac acgtttatta tggttatcga tatcatgata ctgcggcggg gcgctaaaac
     9961 gaagggaaga agcattagtg taattaatta aagcaagata atacgtatgt ttgatcaatt
    10021 ttcgaggcga taaccggcca taaaaaagcg caacgtagaa caggaattat tctcacgaaa
    10081 gaaatccatt accatctctt tatccagtcc atagcggcgc gtcagaatac ccgcttccca
    10141 ggcgctaagc tggcgatctc cggtcttttc gtacatccgg tgtgagtagc ctaatacaaa
    10201 accgcgttta taatcggcac agaattttgt cacattaacc gcactgtcgg catgcgttgc
    10261 ttttaatccc gccattaagc ctttaccaaa atggttattc atcgttcacc tcattcgcta
    10321 tatattatta tatatagcga tattttaggc aaagaacgac ttttgcgcac gctatttttt
    10381 catgcttgtt taagacgtaa tcccgtaaga gataaaccca tcaggagaga tatttatcga
    10441 accatttcag cgtcctttgc caggcaagat cggcggcaga tttgtcataa cgaggcgtgg
    10501 aatcattatg gaatccgtga ttaacccccg gatagatata cgcctcatag accttattat
    10561 tggctttcaa cgccgcctca taagcgggcc agccctcgtt gattcgggtg tccagttccg
    10621 cgaagtggag tagtaaaggc gcttcaatct tcgccacatc ggcagtgggt gcctgacgac
    10681 cataaaacgg caccgcgcag gccagttccg gatacgcgac agccgccgcg ttcgatacgc
    10741 caccgccata gcaaaatccg gtaataccca ctttgcctgt cgcttgcgga tagcgttgca
    10801 taaactcaat tgcggcaaag aaatcattca tcagtttggt tggatcaacc tgctgttgca
    10861 gctcacgacc tttatcatca tttcccggat aacctc
//
LOCUS       DADMHM010000132        10857 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.133, whole genome shotgun sequence.
ACCESSION   DADMHM010000132 DADMHM010000000
VERSION     DADMHM010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10857)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10857)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10857
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.133"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..1355
                     /gene="yeaV"
                     /locus_tag="JN125_002938"
     CDS             <1..1355
                     /gene="yeaV"
                     /locus_tag="JN125_002938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="BCCT family transporter YeaV"
                     /protein_id="HAY8872643.1"
                     /translation="LSWLFMFICAGLGSSTLYWGVAEWAYYYQTPGLNIAPRSQQALE
                     FSVPYSFFHWGISAWATYTLASLIMAYHFHVRKNKGLSLSGIIAAITGVRPQGPWGKL
                     VDLMFLIATVGALTISLVVTAATFTRGLSALTGLPDNFTVQAFVILLSGGIFCLSSWI
                     GINNGLQRLSKMVGWGAFLLPLLVLIVGPTEFITNSIINAIGLTTQNFLQMSLFTDPL
                     GDGSFTRNWTVFYWLWWISYTPGVAMFVTRVSRGRKIKEVIWGLILGSTVGCWFFFGV
                     MESYAIHQFINGVINVPQVLETLGGETAVQQVLMSLPAGKLFLAAYLGVMIIFLASHM
                     DAVAYTMAATSTRNLQEGDDPDRGLRLFWCVVITLIPLSILFTGASLETMKTTVVLTA
                     LPFLVILLVKVGGFIRWLKQDYADIPAHQVEHYLPQTPVEALEKTPVIPAGTVFKGDN
                     "
     gene            1387..2511
                     /gene="yeaW"
                     /locus_tag="JN125_002939"
     CDS             1387..2511
                     /gene="yeaW"
                     /locus_tag="JN125_002939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carnitine monooxygenase subunit YeaW"
                     /protein_id="HAY8872644.1"
                     /translation="MSNLSPDFVLPENFCANPQEAWTIPARFYTDQNAFEHEKENVFA
                     KSWICVAHSSELANANDYVTREIIGESIVLVRGRDKVLRAFYNVCPHRGHQLLSGEGK
                     AKNVITCPYHAWAFKLDGNLAHARNCENVANFDSDKAQLVPVRLEEYAGFVFINMDPN
                     ATSVEDQLPGLGAKVLEACPEVHDLKLAARFTTRTSANWKNIVDNYLECYHCGPAHPG
                     FSDSVQVDRYWHTMHGNWTLQYGFAKPSEQSFKFEEGTDAAFHGFWLWPCTMLNVTPI
                     KGMMTVIYEFPVDSETTLQNYDIYFTNEELTDEQKSLIEWYRDVFRPEDLRLVESVQK
                     GLKSRGYRGQGRIMADSSGSGISEHGIAHFHNLLAQVFKD"
     gene            2567..3532
                     /gene="yeaX"
                     /locus_tag="JN125_002940"
     CDS             2567..3532
                     /gene="yeaX"
                     /locus_tag="JN125_002940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carnitine monooxygenase subunit YeaX"
                     /protein_id="HAY8872645.1"
                     /translation="MSDYQMFEVQVSQVEPLTEQVKRFTLVATDGKPLPAFTGGSHVI
                     VQMSDGDNQYSNAYSLLSSPHDTSCYQIAVRLEENSRGGSRFLHQQVKVGNRLTISTP
                     NNLFALIPSARKHLFIAGGIGITPFLSHMAELQHSDVDWQLHYCSRNPESCAFRDELV
                     QHPQAEKVHLHHSSTGTRLELARLLADIEPGTHVYTCGPEALNEAVRSEAARLDIAAD
                     TLHFEQFAIEDKTGDAFTLVLACSGKEFVVPEEMTILQVIENNKAAKVECLCREGVCG
                     TCETAILEGEADHRDQYFSDEERASQQSMLICCSRAKGKRLVLDL"
     gene            complement(3586..4701)
                     /gene="rnd"
                     /locus_tag="JN125_002941"
     CDS             complement(3586..4701)
                     /gene="rnd"
                     /locus_tag="JN125_002941"
                     /EC_number="3.1.13.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310540.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease D"
                     /protein_id="HAY8872646.1"
                     /translation="MITTDDALASLCEAVRAFPAIALDTEFVRTRTYYPQLGLIQLFD
                     GEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQIL
                     SAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITA
                     KLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLAD
                     WRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLTLVE
                     KVQTLPEEALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLL
                     NWHWRLKPQNNLPELISGWRGELMAEALHNLLQEYPQ"
     gene            complement(4783..6468)
                     /gene="fadD"
                     /locus_tag="JN125_002942"
     CDS             complement(4783..6468)
                     /gene="fadD"
                     /locus_tag="JN125_002942"
                     /EC_number="6.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long-chain-fatty-acid--CoA ligase FadD"
                     /protein_id="HAY8872647.1"
                     /translation="MKKVWLNRYPADVPTEINPDRYQSLVDMFEQSVARYADQPAFVN
                     MGEVMTFRKLEERSRAFAAYLQQGLGLKKGDRVALMMPNLLQYPVALFGILRAGMIVV
                     NVNPLYTPRELEHQLNDSGASAIVIVSNFAHTLEKVVDKTAVQHVILTRMGDQLSTAK
                     GTVVNFVVKYIKRLVPKYHLPDAISFRSALHNGYRMQYVKPELVPEDLAFLQYTGGTT
                     GVAKGAMLTHRNMLANLEQVNATYGPLLHPGKELVVTALPLYHIFALTINCLLFIELG
                     GQNLLITNPRDIPGLVKELAKYPFTAITGVNTLFNALLNNKEFQQLDFSSLHLSAGGG
                     MPVQQVVAERWVKLTGQYLLEGYGLTECAPLVSVNPYDIDYHSGSIGLPVPSTEAKLV
                     DDDDNEVPPGQPGELCVKGPQVMLGYWQRPDATDEIIKNGWLHTGDIAVMDEEGFLRI
                     VDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAVGVPSGSSGEAVKIFVVKKDPSL
                     TEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKILRRELRDEARGKVDNKA"
     gene            complement(6673..7254)
                     /gene="yeaY"
                     /locus_tag="JN125_002943"
     CDS             complement(6673..7254)
                     /gene="yeaY"
                     /locus_tag="JN125_002943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Slp family lipoprotein YeaY"
                     /protein_id="HAY8872648.1"
                     /translation="MAVQKNVIKGILAGTFALMLSGCVTVPDAIKGSSPTPQQDLVRV
                     MSAPQLYVGQEARFGGKVVAVQNQQGKTRLEIATVPLDSGARPTLGEPSRGRIYADVN
                     GFLDPVDFRGQLVTVVGPITGAVDGKIGNTPYKFMVMQVTGYKRWHLTQQVIMPPQPI
                     DPWFYGGRGWPYDYGGWGWYNPGPARVQTVVTE"
     gene            complement(7294..7989)
                     /gene="tsaB"
                     /locus_tag="JN125_002944"
     CDS             complement(7294..7989)
                     /gene="tsaB"
                     /locus_tag="JN125_002944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HAY8872649.1"
                     /translation="MRILAIDTATEACSVALWNDGTVNAHFELCPREHTQRILPMVQD
                     ILTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQGLALGAELPMIGVSTLMTMAQGA
                     WRKNGATRVLAAIDARMGEVYWAEYQRDENGIWRGEETEAVLKPELVHERMQQLSGEW
                     VTVGTGWQAWPDLGKESGLVLRDGEVLLPATEDMLPIACQIFAEGKTVAVEHAEPVYL
                     RNNVAWKKLPGKE"
     gene            complement(8047..9957)
                     /locus_tag="JN125_002945"
     CDS             complement(8047..9957)
                     /locus_tag="JN125_002945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HAY8872650.1"
                     /translation="MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVE
                     AGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKG
                     RSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPL
                     VTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPE
                     ADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLA
                     QSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDA
                     AFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSW
                     IFTSATLSVNDDLHHFTSRLGIEQAESLLLPSSFDYSRQALLCVPRNLPQTNQPGSAR
                     QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFV
                     SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFD
                     EVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIA
                     RAVRFLAIPSSR"
     gene            10089..10433
                     /locus_tag="JN125_002946"
     CDS             10089..10433
                     /locus_tag="JN125_002946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416323.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HAY8872651.1"
                     /translation="MTIVRIDAEARWSDVVIHNNTLYYTGVPENLDADAFEQTANTLA
                     QIDAVLEKQGSNKSSILDATIFLADKNDFAAMNKAWDAWVVAGHAPVRCTVQAGLMNP
                     KYKVEIKIVAAV"
     gene            10795..>10857
                     /locus_tag="JN125_002947"
     CDS             10795..>10857
                     /locus_tag="JN125_002947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001166138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1889 family protein"
                     /protein_id="HAY8872652.1"
                     /translation="MQIKVIYSLIDNMVNFKDKNM"
BASE COUNT         2587 a         2906 c         2695 g         2669 t
ORIGIN      
        1 cgctctcctg gctgtttatg tttatttgtg ccggtttagg ttcttctacg ctttattggg
       61 gggttgctga atgggcctat tattatcaaa cacctggatt aaatatcgca ccgcgttcac
      121 aacaggcact cgaatttagc gttccctact ctttcttcca ctggggcatc agcgcctggg
      181 caacttatac gctggcctca ttaatcatgg cttatcactt tcatgtgcgg aaaaacaaag
      241 gtctgagcct ttccggcatt attgctgcta ttaccggcgt tcgcccgcaa ggcccatggg
      301 gaaaactggt tgatttgatg ttcctgatcg ccactgtcgg cgcactgact atttcccttg
      361 ttgtcaccgc agcaaccttt actcgtggac tttccgcact gacaggttta cccgacaact
      421 tcaccgtgca ggcatttgtg atcctgcttt ctggcggcat tttttgccta agctcgtgga
      481 ttggtatcaa caacggtttg caacgtctga gcaaaatggt tggctggggc gcgttcctgc
      541 tgccattact ggtgctgatt gtcggcccaa ccgaatttat taccaacagc atcatcaatg
      601 ccatcggcct gaccacgcaa aacttcctgc aaatgagctt attcaccgat ccgcttggcg
      661 atggttcatt tacccgcaac tggaccgttt tctactggct gtggtggatc tcatacaccc
      721 ctggcgtagc aatgtttgtc acccgcgttt cccgcggtcg taagattaaa gaagttatct
      781 ggggactgat cctcggcagc accgtcggtt gctggttctt cttcggcgta atggaaagct
      841 atgccattca tcagtttatc aatggcgtaa tcaacgtccc acaggtgctg gaaacactgg
      901 gcggcgaaac agctgtacag caagttctga tgtcgttgcc agccggtaaa ttgttcctcg
      961 ccgcatacct gggcgtgatg attattttcc ttgcctcgca tatggatgca gtggcctaca
     1021 ccatggcggc gaccagtacg cgtaatctcc aggaaggtga cgatcctgac cgtgggctgc
     1081 gtcttttctg gtgcgtggtg atcactctga tcccgctttc catcttgttt accggtgctt
     1141 cgctggaaac gatgaaaacc accgtcgtgc tcacagccct tcccttcctc gtcattttac
     1201 tggtgaaagt cggcggattt attcgctggc tgaaacagga ttacgccgac attccggctc
     1261 atcaagttga acattatctc ccgcagacac cggttgaagc cctggaaaaa acaccagtga
     1321 tccctgcggg aaccgtattc aaaggcgaca actgagcgcc atcatcctaa cgataaaggt
     1381 atccctatga gcaatctgag ccctgacttt gtactacccg aaaatttttg cgctaacccg
     1441 caagaggcgt ggaccattcc tgcccgtttt tataccgatc agaacgcgtt tgaacacgaa
     1501 aaagagaacg tcttcgccaa aagctggatt tgcgtcgctc acagcagcga actggcgaat
     1561 gccaatgatt atgtgacgcg tgagatcatt ggcgaaagca tcgtgctggt acgcggtcgt
     1621 gataaggttt tgcgcgcgtt ctataacgtg tgtccgcacc gtggtcatca gttgttgagc
     1681 ggtgaaggaa aagcaaaaaa tgtgattacc tgcccgtatc acgcatgggc attcaaactc
     1741 gatggcaatc tggcccatgc acgtaactgc gaaaacgtcg ccaatttcga tagcgacaaa
     1801 gcgcaactgg ttccggtgcg tctggaagaa tatgccggat tcgtcttcat caacatggac
     1861 cccaacgcca ccagcgtaga agatcagtta cccggtctgg gcgcgaaagt gctggaagcc
     1921 tgcccggaag tccacgatct gaaactggcg gcccgcttta ccacccgcac gtctgccaac
     1981 tggaagaaca ttgtcgataa ctatctcgag tgctatcact gtggtccggc gcatccaggt
     2041 ttctccgact ccgtacaggt tgatcgttac tggcacacca tgcacggtaa ctggacgctg
     2101 caatacggtt tcgccaaacc gtccgaacag tcgtttaaat ttgaagaggg tacggatgcg
     2161 gcattccacg gtttctggct gtggccgtgc acgatgctga acgtcacccc gatcaaaggg
     2221 atgatgacgg tcatttatga attcccggtg gattctgaaa ctaccctgca aaactacgat
     2281 atttacttca ccaatgaaga gttaaccgac gagcaaaaat cgctgattga gtggtatcgc
     2341 gatgtgttcc gtccggaaga tttacgtctg gttgaaagcg tacagaaagg gctgaaatcg
     2401 cgtggctatc gtggtcaggg gcgcatcatg gccgacagta gcggtagtgg catttccgaa
     2461 catggtatcg cccatttcca taatctgctg gcgcaggtgt ttaaggacta atgacatcgg
     2521 cggcggtatt ttccgccgct gggctgattt ttgatggagt acagcaatgt cagactatca
     2581 aatgtttgaa gtacaggtga gccaggttga accccttacc gaacaggtga aacgcttcac
     2641 gctggtggca accgatggca aaccgctgcc tgcgttcacc ggaggaagtc acgtcattgt
     2701 gcagatgagc gatggtgata accagtacag caatgcgtat tcactactga gttcgccgca
     2761 tgacacctct tgttatcaga ttgccgttcg gctggaggaa aactcgcgcg gcggttcccg
     2821 ctttttgcat cagcaggtaa aagtgggcaa tcggttaacg atttcaacgc ctaataacct
     2881 gtttgcgcta attccctcag ccagaaagca tctgtttatc gcgggcggta ttggtatcac
     2941 ccctttcctg tcgcacatgg cagagctgca acacagcgac gtcgactggc agctacatta
     3001 ctgctcgcga aatccagaaa gttgcgcatt tcgtgatgag ctagtccagc atccgcaggc
     3061 tgagaaagtt cacttgcatc actcatcaac cggaacacga ctggaattag cgcgattatt
     3121 ggcggatatc gaacctggca cacacgttta tacctgtggt cccgaggcgc taaatgaagc
     3181 ggtaagaagt gaagctgcgc gtctggacat cgccgccgat acgctgcact ttgagcaatt
     3241 tgctatcgaa gacaaaaccg gcgatgcctt taccctggtg cttgcctgtt ccggaaaaga
     3301 gtttgtggtg ccggaagaga tgactatttt gcaggttatt gaaaataata aagccgcgaa
     3361 agtggaatgt ttatgtcgtg aaggggtatg cggaacctgc gaaacagcaa tactggaagg
     3421 tgaagctgac catcgggatc agtattttag cgatgaagag cgtgccagcc agcaaagtat
     3481 gttgatctgt tgttcgcgtg cgaagggtaa acgcctggtg ttggatttgt agtttgccaa
     3541 agccggatgt ggcgctgagc gcgcccagtc cggcttcgga agattttact gcggatattc
     3601 ctgcaataaa ttgtgtaatg cttccgccat cagctcacca cgccagccgg aaatcagctc
     3661 cggcaaattg ttctgcggtt tcagtctcca gtgccagttc agcagttggt tgatttgccg
     3721 acgcgatgcc agtaattcgg cgctgatctt atgcgtttcg ctcacgtcag taatcagcga
     3781 cttaatcgct ttaaacgctt tacgataacc aggcatgtcc atcaggttaa gcatcggctg
     3841 cggtaaggcc tcttccggca atgtctgcac tttttccacc agcgtcagca gcgttttacc
     3901 gtgaaagcgg atttcgctac cggataaacc caagctgtcc agttcgccta aacttcccgg
     3961 catataacgc gcgaccgacc acaaatgctc ttcacgcacg acaaagttca ccgccagatc
     4021 acgctctcgc gccttgcgca gtcgccagtc ggctaacagt tgcagacagg ccagttggcg
     4081 tgtgcgtaac tgccaggcat tggtgatatc acgccaggca tcttccggcg caacgacttc
     4141 ctgacgacgc atttgcatca ggcggcattc atccagcgcc gcaggtagcc agccggaggc
     4201 ctccgtttct accataagct tggcggtgat cggtaacaga taccagacat ccgccgctgc
     4261 gtattcacac tgacgttcgg tcagcggtct ggccagccag tcggtgcgcg attcactctt
     4321 gtccagcgta acgccggaat actcttccac catggaagcg aaaccccatg acatcgggcg
     4381 tccgcagaag gcagaaagga tttgcgtgtc aatcaagggt tgtggtaatt cgccaaagac
     4441 attgaggaac acttccagat cttcactgcc tgcatggaga aattttgtga tggacggatc
     4501 gcgcaggatc gctttcagcg gtgaccagtc ggtgatcccg agaggatcaa ttagcgccag
     4561 atgctcgcca tcgaaaagtt gaatcaaccc cagctgcggg taataagtgc gcgtacgaac
     4621 aaattcagta tccagggcta tcgccggaaa ggcacggacg gcttcacaca aagaagccag
     4681 cgcatcgtcc gtggtaatca tttggtaatt caaattgttt tctctttagt gggcgtcaaa
     4741 aaaaacgccg gattaaccgg cgtctgacga ctgacttaac gctcaggctt tattgtccac
     4801 tttgccgcgc gcttcgtcac gtaattctcg tcgcaaaatt tttccgacgt tagatttcgg
     4861 taactcatca cgaaactcca ccagcttcgg tactttgtat cccgtgagct gacggcggca
     4921 aaaagtcacc agtgactctt cggtaagcga tggatctttt ttcactacga agattttcac
     4981 cgcttcacca ctggagccgg aaggtacgcc aacagccgcg acttcctgta cgccaggatg
     5041 ctgcatgacg acatcttcaa tctcgttggg atagacgtta aaaccggaaa ccagaatcat
     5101 gtctttttta cgatcgacaa tgcgcaggaa tccttcttca tccattaccg cgatgtcgcc
     5161 ggtgtgtaac cagccatttt tgatgatttc atcggtagca tcgggacgct gccagtaacc
     5221 cagcatcacc tgcggtcctt tgacacaaag ctcacccggt tgacctggtg gtacttcatt
     5281 atcatcatca tccaccagtt tggcttccgt cgacggcacc ggcaaaccga tgctaccact
     5341 atgataatca atatcatatg ggttaacgct gaccagcggc gcacactcgg taaggccata
     5401 gccttccagc agatactgtc cggtcagttt cacccaacgc tctgccacca cttgctgcac
     5461 tggcatccca ccgcctgcgg aaagatgcag actggagaaa tccagctgct ggaactcttt
     5521 attgttcagc aacgcattga acaaggtgtt aacgccagtg atagcggtaa acggatattt
     5581 cgctaactct tttaccaacc ctggaatatc acgcgggtta gtgataagca ggttctgccc
     5641 acccagttcg ataaacagca ggcagttaat ggtcagggca aaaatgtgat acagcggcag
     5701 tgccgttact accagttctt tacctggatg cagcaacggc ccataggtgg cgttgacctg
     5761 ttccaggttc gccagcatat tgcggtgagt cagcatcgcg cctttcgcca cacctgtggt
     5821 gccgccggtg tattgcagga aggctaaatc ttccggcacc agttcgggtt tgacgtactg
     5881 catccggtag ccgttatgca gtgcgctacg aaatgaaatg gcatctggca gatggtattt
     5941 cggcaccaaa cgcttgatgt atttaacaac gaaattgact accgtgcctt ttgccgtaga
     6001 tagctgatcg cccatacggg tcagaattac gtgctgaacg gcggttttat caaccacttt
     6061 ttccagtgtg tgagcaaagt tagacacgat aacaatcgcc gatgcgccgc tatcgttaag
     6121 ctgatgctca agctcacgcg gggtatacaa cgggttaacg tttacgacga tcatcccggc
     6181 acgcaaaatg ccaaacagcg ccaccggata ttgcaataaa ttaggcatca tcaacgcaac
     6241 gcgatcgcct ttcttcagcc ccaacccttg ttgcaaataa gcggcaaacg cgcgactgcg
     6301 ttcttccagc ttgcggaagg tcatcacctc ccccatattc acaaacgcag gctgatcggc
     6361 gtagcgcgcg accgactgct caaacatatc taccagagat tgataacggt cagggttgat
     6421 ctccgtcgga acgtccgcgg gataacggtt aagccaaacc ttcttcaatt cttcacctct
     6481 aaaatgcgtg ttcgtcgtca tcgcaacccc aaatgatata catgccgtta acataatatt
     6541 aactcatcat accagcttga taattaccca acgaaaaggt tgcgaagctc gtcactattt
     6601 atttttatct ttaccgtaag aatgcagaaa cagcggacca gccgctgttt ctttttcttt
     6661 aaaaacaagc aattattcag ttacaactgt ttgtactctc gcgggaccgg gattatacca
     6721 gccccatccg ccgtagtcat agggccagcc acgaccgcca taaaaccatg gatcaatcgg
     6781 ctgaggcggc ataatcacct gctgggttaa atgccaacgt ttgtaacccg ttacttgcat
     6841 caccataaat ttatagggcg tattgccgat tttgccgtca accgcaccag tgattggccc
     6901 gactaccgta accagttgtc cacggaaatc caccgggtcc agaaaaccgt tcacatcggc
     6961 ataaatgcga ccgcgagaag gttctcccag cgtcggtctg gctccgctgt ccagcggtac
     7021 ggtagcaatt tccaggcggg ttttcccttg ctggttttgt accgcaacca ctttgccacc
     7081 aaagcgtgcc tcctgaccaa cgtacagctg cggcgcactc atcacccgaa ctaaatcttg
     7141 ttgcggcgtg ggactgctgc ctttaatggc gtccggcaca gtgacacaac cgctcagcat
     7201 tagcgcaaac gtacctgcca gtatgccttt gataacattc ttttgaaccg ccatgatgcg
     7261 actccttttt ttctcagggc atactcttaa gattcattct ttgcccggaa gtttcttcca
     7321 tgcgacgttg ttacgtaaat aaaccggttc ggcatgttcc accgccaccg ttttaccctc
     7381 ggcaaatatc tgacacgcaa tcggcagcat atcttccgtc gctggcagta aaacttctcc
     7441 gtcgcgcaaa accagcccgc tctctttacc gagatccggc caggcttgcc agcccgtccc
     7501 taccgttacc cattcgccgg aaagctgttg cattcgttca tgaacgagtt cgggtttaag
     7561 tacggcttcg gtttcttcac cgcgccagat accgttttca tcacgctgat attcggccca
     7621 gtaaacttcg cccatccgcg catcaatggc agccagcacg cgggttgcgc cgtttttgcg
     7681 ccacgcccct tgcgccattg tcattagcgt ggagacgcca atcatcggca gctctgcgcc
     7741 aagtgccagc ccttgcgcaa tgccaatacc aatgcgcacg ccggtaaagc taccggggcc
     7801 gcgcccgtaa gccagagcgt taatatcagt cagggaagtt ccgctggtgg tcaggatatc
     7861 ctgcaccatc ggtaagattc gttgagtatg ttcacgaggg caaagctcaa aatgagcgtt
     7921 gacagtaccg tcgttccaca gggcgacaga gcaggcctct gtcgcggtat cgatagccag
     7981 aattcgcatg ggtcttcgtg cttagatcaa taaaaaggcg cgcatcatac catactccgt
     8041 aacaaattac ctggaggatg gtatcgcaag gaaacgaacc gcacgggcaa tgtcacgggt
     8101 gcgcggcgcg ggcggcagac tggcgagaaa cgtcgcgccg taagggcgca tcaccagccg
     8161 attgtcacaa atcaccaaaa ccccgcgatc gtcggcgtcg cgaatcagtc gccctacccc
     8221 ctgcttgaga gtaatcaccg catccggcag ttgtacttca tcgaacgggt cgccaccgcg
     8281 caaacggcaa tcttccatgc gcgcttttaa cagcgggtca tccggtgagg taaacggcaa
     8341 cttgtcgata atcaccaatg acaatgtatc gccacgcacg tccacccctt cccagaaact
     8401 actggttgcc acaagaagcg cgttaccggc gctgacaaat tgctgcaaca gttgcccttt
     8461 gctggtttcc ccctgcaaca aaacgggaag cgtcatggta gcgcggaact gctcggccag
     8521 atcacgcatc atggcgtgcg aggtacaaag cataaaacaa cgaccgttgt tagcttcgat
     8581 gatcggtcgc agcattgccg ctaactggcg agcagaacct ggctggttgg tttgcggcag
     8641 attgcgcggc acacagagta acgcctggcg gctgtaatca aacgagcttg gcaatagcaa
     8701 cgactccgcc tgttctatcc caagccgcga ggtgaaatga tgcagatcgt cgttcaccga
     8761 cagcgttgct gaggtgaaga tccagctacc aggcttttgc gccattaact ctttgaattt
     8821 atccgccacg ctgagcggcg tgagagccag agtaaaatgg cgcgaagtgc attcgtacca
     8881 gtagctgtag cccggctgat tgatctcttt tagccgcttc agccgtgtgc gatacaacgt
     8941 agcgcgctca aatgccgcat ccagcaaggc ggaacgcccc agtgacagtt tcgccacgtc
     9001 ataacaaagt tccagggtgt catcgagcag taaaaatgcc cgctgaattt gcggattagc
     9061 taacagctca cgcaggttac ctcgataacc tggctcaccg agttgcagac gaaaatcctg
     9121 cgcactctgg gcaagacgat cagcgcactt ttgtaactgc tgggtgtctt ttaattcggt
     9181 gcggtaggcg atggtgatgt cttttgccag gtcgagcagt tgtcgactgg agagtgactg
     9241 accaaaatac tggctggcaa tgtccggtag ctggtgggct tcgtcgaaga tcatgacgtc
     9301 cgcttccggg atcagttcgc caaatccact ctctttaacc accatatccg ccagaaagag
     9361 atgatggttt accaccacca catcggcgtc catcgctttt ttacgtgctt tgaccacaaa
     9421 gcaatcttta tacatcgggc agtcgctgcc aagacagttg tcgttggtgc tggtaaccag
     9481 cggccacgcc tgtgaatctt ccgccacgct gacgcaggtg ctgatatcac catcgactgt
     9541 ttgattagac caggagcgca gcaggatcac atcgcttaag atttgtaccg gcagatcgcc
     9601 ccccgccagc gcctgctgtt cgagacgttc gaggcagagg tagtttgagc gccctttcag
     9661 cagcgccacg ttgcccgtat atttcaatgc ctttgagact gttggcaaat cgcggctgta
     9721 gagctgatcc tgcaacgctt ttgagccggt cgagataatg actttctttt tcgcccgcag
     9781 cgcaggagcc aggtaagcgt aggttttgcc cgtaccggtt cctgcttcca ccaccagcgg
     9841 ctggcctttt tctatcgcct gggtgacggc taccgccatc tgtcgctgtg gttctcgcgg
     9901 cttaaagcct ggtatcgctt tcgccagctg accgtctggt gcaaaatcgt ccgtcacact
     9961 accccctgtt gatttgaaca gggattatgt caggatgagg gcgctttcgc cagttgaagt
    10021 ggtgacggca acctcacatt gtggcagtct ttgcagcacg aaaatggaag tataatgagg
    10081 acaaaatgat gactatcgtt cgtatcgatg ctgaagcccg ctggtctgat gtagtaatcc
    10141 acaacaacac gctctactac actggtgtac cggaaaacct cgacgccgat gcttttgagc
    10201 aaaccgccaa cacgctggcg cagattgacg ccgtgctgga aaaacagggc agcaataaat
    10261 cgagcattct ggatgccacc attttcctgg ctgataaaaa cgacttcgcg gcgatgaata
    10321 aagcgtggga tgcctgggtt gtggcgggtc atgcgccggt gcgctgcacg gtgcaagcgg
    10381 ggctgatgaa cccgaagtat aaagttgaaa ttaagattgt ggctgcggtg taagctttat
    10441 cgaagcaaaa taagtcagac gataatttat cgataatact ggtcggtttt acataaatcg
    10501 accagagatt aagatattac tgttgatgct cctgctaatt cattatttat ttttataatt
    10561 tcaattttag ctataaagct aactatataa ataaacataa ccatgccgtt gtgttcgccc
    10621 ttcgattagc acctctggtt ttctttctta gctgaacaat ctggttatag cgtgcggact
    10681 gaccgttaat tttctccatc ttactggata acacaccatg agctgctacc tttaaaacac
    10741 ctgaatgtca acaggttaac tcgtgccata tcgttataat ccctttgata ttagatgcaa
    10801 attaaggtca tatatagcct tatcgataac atggttaatt ttaaggataa gaatatg
//
LOCUS       DADMHM010000133        10812 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.134, whole genome shotgun sequence.
ACCESSION   DADMHM010000133 DADMHM010000000
VERSION     DADMHM010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10812)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10812)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10812
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.134"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            213..1484
                     /locus_tag="JN125_002948"
     CDS             213..1484
                     /locus_tag="JN125_002948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HAY8872653.1"
                     /translation="MQHNTLSKHNQKLPFTRYDFGWVLLCIGMAIGAGTVLMPVQIGL
                     KGIWVFITAAIIAYPATWVVQDIYLKTLSESDSCNDYTDIISHYLGKNWGIFLGVIYF
                     LMIIHGIFIYSLSVVFDSASYLKTFGLTDADLSQSLLYKVAIFAVLVAIASGGERLLF
                     KISGPMVVVKVGIIVVFGFAMIPHWNFANITAFPQASVFFRDVLLTIPFCFFSAVFIQ
                     VLNPMNIAYRKREADKVLATRLALRTHRISYITLIAVILFFAFSFTFSISHEEAVSAF
                     EQNISALALAAQVIPGHIIHITSTVLNIFAVLTAFFGIYLGFHEAIKGIILNLLSRII
                     DTKKINSRMLTLAICAFIVITLTIWVSFRVSVLVFFQLGSPLYGIVSCLIPFFLIYKV
                     AQLEKLRGFKAWLILLYGILLCLSPLLKLIE"
     gene            complement(1514..2518)
                     /gene="dppF"
                     /locus_tag="JN125_002949"
     CDS             complement(1514..2518)
                     /gene="dppF"
                     /locus_tag="JN125_002949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP binding subunit
                     DppF"
                     /protein_id="HAY8872654.1"
                     /translation="MSTQEATLQQPLLQAIDLKKHYPVKKGMFAPERLVKALDGVSFN
                     LERGKTLAVVGESGCGKSTLGRLLTMIETPTGGELYYQGQDLLKHDPQAQKLRRQKIQ
                     IVFQNPYGSLNPRKKVGQILEEPLLINTSLSKEQRREKALSMMAKVGLKTEHYDRYPH
                     MFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQELGLSYVFI
                     SHDLSVVEHIADEVMVMYLGRCVEKGTKDQIFNNPRHPYTQALLSATPRLNPDDRRER
                     IKLSGELPSPLNPPPGCAFNARCRRRFGPCTQLQPQLKDYGGQLVACFAVDQDENPQR
                     "
     gene            complement(2515..3498)
                     /gene="dppD"
                     /locus_tag="JN125_002950"
     CDS             complement(2515..3498)
                     /gene="dppD"
                     /locus_tag="JN125_002950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter ATP-binding protein"
                     /protein_id="HAY8872655.1"
                     /translation="MVLLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGS
                     GKSVSSLAIMGLIDYPGRVMAEKLVFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSL
                     NPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ
                     RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVA
                     EAAHKIIVMYAGQVVETGDAHAIFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPG
                     KYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLDDAGRPTL"
     gene            complement(3509..4405)
                     /gene="dppC"
                     /locus_tag="JN125_002951"
     CDS             complement(3509..4405)
                     /gene="dppC"
                     /locus_tag="JN125_002951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010426221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter permease DppC"
                     /protein_id="HAY8872656.1"
                     /translation="MSQVTENKVISAPVPMTPLQEFWHYFKRNKGAVVGLVYVVIVLF
                     IAIFANWIAPYNPAEQFRDALLAPPAWQEGGSMAHLLGTDDVGRDMLSRLMYGARLSL
                     LVGCLVVVLSLIMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVAIFGPSIG
                     NAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAPLI
                     VQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAILL
                     TVLAFNLMGDGLRDALDPKLKQ"
     gene            complement(4415..5434)
                     /gene="dppB"
                     /locus_tag="JN125_002952"
     CDS             complement(4415..5434)
                     /gene="dppB"
                     /locus_tag="JN125_002952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005133865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptide ABC transporter permease DppB"
                     /protein_id="HAY8872657.1"
                     /translation="MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGI
                     SPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISMKSRIPVWEEFVPRFQATLEL
                     GVCAMIFATAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHW
                     NLTPVSGRVSDMVFLDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLA
                     VIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLA
                     GAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPR
                     IRHKK"
     gene            complement(5742..7082)
                     /locus_tag="JN125_002953"
     CDS             complement(5742..7082)
                     /locus_tag="JN125_002953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001488423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HAY8872658.1"
                     /translation="MYTFHLRKGVKWHDNKEFKPTRELNADDVVFSFDRQKNAQNPYH
                     KVSGGSYEYFEGMGLPELISEVKKVDDNTVQFVLTRPEAPFLADLAMDFASILSKEYA
                     DAMMKAGTPEKLDLNPIGTGPFQLQQYQKDSRIRYKAFDGYWGTKPQIDTLVFSITPD
                     ASVRYAKLQKNECQVMPYPNPADIARMKQDKSINLMEMPGLNVGYLSYNVQKKPLDDV
                     KVRQALTYAVNKDAIIKAVYQGAGVSAKNLIPPTMWGYNDDVQDYTYDPEKAKALLKE
                     AGLEKGFSIDLWAMPEQRPYNPNARRMAEMIQADWAKVGVQAKIVTYEWGEYLKRAKD
                     GEHQTVMMGWTGDNGDPDNFFATLFSCAASEQGSNYSKWCYKPFEDLIQPARATDDHN
                     KRVELYKQAQVVMHDQAPALIIAHSTVFEPVRKEVKGYVVDPLGKHHFENVSIE"
     gene            complement(7092..7322)
                     /locus_tag="JN125_002954"
     CDS             complement(7092..7322)
                     /locus_tag="JN125_002954"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872659.1"
                     /translation="MLKLGLSLVAMTVAASVQAKTLVYCSEGSPEGFNPQLFTSGTTY
                     DASSVPLYNRLVEFKIGTTEVIPGLAEKWEVS"
     gene            complement(8094..8170)
                     /locus_tag="JN125_002955"
     tRNA            complement(8094..8170)
                     /locus_tag="JN125_002955"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8134..8136),aa:Pro,seq:cgg)
     gene            complement(8262..9953)
                     /gene="eptB"
                     /locus_tag="JN125_002956"
     CDS             complement(8262..9953)
                     /gene="eptB"
                     /locus_tag="JN125_002956"
                     /EC_number="2.7.8.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418002.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kdo(2)-lipid A phosphoethanolamine
                     7''-transferase"
                     /protein_id="HAY8872660.1"
                     /translation="MRYIKSITQQKLSFLLAIYIGLFMNGAVFYRRFGSYAHDFTVWK
                     GVSAVVELAATVLVTFFLLRLLSLFGRRSWRILASLVVLFSAGASYYMTFLNVVIGYG
                     IIASVMTTDIDLSKEVVGLNFILWLIAVSALPLILIWNNRCRYTLLRQLRTPGQRIRS
                     LAVVVLAGIMVWAPIRLLDIQQKKVERATGVDLPSYGGVVANSYLPSNWLSALGLYAW
                     ARVDESSDNNSLLNPAKKFTYQAPQNVDDTYVVFIIGETTRWDHMGIFGYERNTTPKL
                     AQEKNLAAFRGYSCDTATKLSLRCMFVRQGGAEDNPQRTLKEQNIFAVLKQLGFSSDL
                     YAMQSEMWFYSNTMADNIAYREQIGAEPRNRGKPVDDMLLVDEMQQSLGRNPDGKHLI
                     ILHTKGSHFNYTQRYPRSFAQWKPECIGVDSGCTKAQMINSYDNSVTYVDHFISSVID
                     QVRDKKAIVFYAADHGESINEREHLHGTPRELAPPEQFRVPMMVWMSDKYLENPANAQ
                     AFAQLKKEADMKVPRRHVELYDTIMGCLGYTSPDGGINENNNWCHIPQAKEAAAN"
     gene            complement(10206..10730)
                     /gene="lpfE"
                     /locus_tag="JN125_002957"
     CDS             complement(10206..10730)
                     /gene="lpfE"
                     /locus_tag="JN125_002957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000831418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long polar fimbrial protein LpfE"
                     /protein_id="HAY8872661.1"
                     /translation="MKRTILALCLLPLSFSSFAATTDLGPKGTLKFTLKISQGACELV
                     KDSVEVDMGTAVLKKPVRIGTEINPTPFSIGLKNCSEVVRAYVTMDGTPNADDSNLFA
                     LDAGGATGVGLKIKTAAGVQQFPENTTPTPVEFAINGDGAHQLNYIASYVPIRVDATI
                     GRADATVDFTVQYE"
BASE COUNT         2597 a         2876 c         2718 g         2621 t
ORIGIN      
        1 ctttatttgc aatagttgca gttcatatcc gggctgactc cagactggta gtgaaatgcg
       61 caattttgta gaattgcgcc tcctcgcgac ctccccagtg aatctgttgc ctcatttttt
      121 acatactgcg tattcgactt ctccacctgt tgcgcaagag aaactgggtt tattcatttt
      181 tgcgaggccg acttctttct ggacaggact ttatgcagca caacacacta tcgaaacaca
      241 atcagaaatt gccgtttaca cgctacgact tcggctgggt tttattatgc ataggcatgg
      301 cgattggtgc cggaaccgtg ctgatgccag tacaaattgg cttgaaggga atttgggtat
      361 ttattaccgc agcgatcatt gcttatcctg ccacctgggt agtgcaggac atttatttaa
      421 aaaccctttc tgaaagcgat tcctgtaatg actacaccga tattatcagt cattacctgg
      481 ggaagaactg gggaattttc ctcggggtta tctacttttt gatgattatc cacgggattt
      541 ttatctactc tctctccgtg gttttcgaca gcgcctcgta cctgaaaacc ttcggtttaa
      601 ccgatgccga tctttcacaa tctctacttt ataaagtcgc tattttcgcc gtactggtag
      661 cgattgcgtc tggtggtgaa cgattactgt ttaagatttc cgggccaatg gtggtggtca
      721 aagtagggat tattgtcgtg ttcggttttg cgatgatccc gcactggaat ttcgccaata
      781 taaccgcctt cccgcaagcc tccgtctttt tccgcgatgt cctgcttaca attccatttt
      841 gcttcttttc tgcggtattt attcaggtac ttaacccaat gaatattgcc tatcgtaaac
      901 gggaagcaga taaagtactg gcaacccggc tcgcgctgcg tacccaccga attagttata
      961 tcacgctcat cgcggtgatc ctgttttttg ccttttcgtt taccttctca attagccacg
     1021 aagaagccgt ttctgccttt gaacaaaata tctcggcact ggcactggcc gcgcaggtga
     1081 tccctggaca tatcattcat atcacctcta cggtgctgaa tatctttgcc gtactgaccg
     1141 cattctttgg catttatctc ggtttccacg aggctattaa aggcattatt ctcaatctgt
     1201 taagccgaat tattgatacc aagaaaatta actcacgcat gctgactctg gcgatctgcg
     1261 cttttatcgt cattacgttg acgatttggg tttcgtttcg tgtatcggtg ctggtgttct
     1321 ttcagttggg aagcccgtta tatggcattg tgtcgtgcct cattccgttt ttcctgatct
     1381 ataaagtcgc acaactggaa aaacttcgcg gatttaaagc ctggctaatt ctgctttacg
     1441 gcattttgct atgcttgtcg ccactgttga agctgattga gtaaaccgga gcgcatggcc
     1501 ccggttttgt gagttaacgc tgcggatttt catcctgatc aacagcaaaa caagctacca
     1561 gttgaccgcc gtagtctttt agctgcggct gcaactgggt gcaggggccg aagcgccgac
     1621 gacagcgggc gttgaaggcg caacccggcg gtggattcag tgggcttggt agttcaccgc
     1681 tgagcttgat gcgctcgcgg cgatcgtccg ggttcaggcg cggcgtcgcg gaaagtagcg
     1741 cctgagtgta cggatggcgc gggttattga agatttggtc tttcgttccc ttctccacgc
     1801 agcggcccag gtacatcacc atcacttcat cagcaatgtg ctccaccacc gacaggtcgt
     1861 gggagataaa gacataagac agccccaact cctgctgcaa atccatcatc agattcagca
     1921 cctgcgcgcg cactgaaaca tccagcgcgg aaaccggttc atcggcaatc accacatccg
     1981 ggtcgagcat cagaccacgg gcgatggcga tacgctgacg ctgaccgccg gagaacatat
     2041 gcggatagcg gtcatagtgc tcggttttca ggccgacttt cgccatcatc gacagggctt
     2101 tttcccgacg ctgttctttg cttaagctgg tgttgatcag cagcggctct tcaagaattt
     2161 gcccgacttt tttacgcgga ttcagcgaac cgtaagggtt ctggaagacg atctggattt
     2221 tctgccgacg cagcttctgc gcctgcggat cgtgcttaag cagatcctgc ccctggtaat
     2281 acagctcgcc accggtgggc gtttcaatca tcgtcagcaa ccgaccgagg gtcgatttac
     2341 cgcagccaga ttcgcccact actgccagcg ttttgccacg ttcaaggtta aacgaaacgc
     2401 catccagcgc tttaaccaga cgttccggcg cgaacatgcc tttcttcacc ggataatgtt
     2461 ttttcaggtc gatagcctgc aacagcggtt gttgcagggt ggcctcttgc gtactcatag
     2521 tgtcggcctc ccggcatcat caagtgggta atggcatttg gactgacgcc cgtcagcgag
     2581 catattcagc gccggttctt cagcgcgaca tctgtcagtg gcataggggc agcgcgggtt
     2641 aagcaggcag ccgttcgggc ggtcgtactt gccgggaacg acacctggca acgacgccag
     2701 acgttctttg tcctgagcaa attctggcag cgcacgcagc aatgcctgag tatacgggtg
     2761 acgcggcgca tggaagatgg cgtgcgcatc gcccgtttcc accacctggc ctgcatacat
     2821 cacaatgatt ttatgcgcag cttccgccac cagcgccagg tcatgggtaa tcaacaccag
     2881 cgccatgttc tctttctgct gtagctccag cagtagttcg atgatttgcg cctgaatggt
     2941 cacgtccagc gcggtggtcg gctcatcggc aatcagcagt tttggtcgac aggcaatcgc
     3001 catggcgatc atcacgcgct ggctcatgcc gccggaaagc tgatgcgggt aaacatccag
     3061 acgcgaagcc ggatcgggaa taccgacctg attcagcagg tcaatcgccc gctgacggcg
     3121 ggtacttttg ttgccgccct gatgcacctt aatcgcttcc atgatctgga aacccacggt
     3181 gtagcacggg ttaaggctgg tcatcgggtc ctggaagatc atcgccactt cggcacccac
     3241 caggttgcgg cgctcttttt ctgatatacg ctgcaaatcc tgaccgttaa acaccagttt
     3301 ttccgccatt acgcggcccg gataatcaat cagccccata atcgccaggg aactgaccga
     3361 cttaccggag ccggactcac ccacaatccc aaccacttcg ccctgtttta cgctgtagct
     3421 gatgcggtct acggcgcgga acggtgcgct ttcgtcgccg aaatgcaccg ataatttatc
     3481 tacatttaat aacaccatct cgaacctctt actgcttcag tttgggatcg agcgcgtcac
     3541 gcagaccgtc acccatcagg ttaaatgcca gcaccgtcag caggatcgcc agacccggga
     3601 aggtcacgac ccaccaggcg ctttgcgcga actgcaacac gtcggagagc atggtgcccc
     3661 actccggcgt tggcggctgt gcccccatgc cgaggaaacc aagagcagcc atatcgagaa
     3721 tggcgttaga gaaaccgagc gacgcctgaa caatcagcgg cgcaaggcag ttcgggaaga
     3781 tgttaataaa catctgacgc atcgccccgg cacccgccac gcgagacgcg gtgacgtaat
     3841 cgcggttaac ttccaccagc acggcggcgc gggttaagcg cacatagtgc ggcaaggcaa
     3901 cgaaggtcag tgccagcgcg gcgttaccaa tcgacgggcc gaaaattgcc accagcgcca
     3961 gcagcagact tggcagcgcc agcatgatat cgaccacgcg cataatgatg ttatcgacca
     4021 ggccgccaaa gtaaccggcg atcaggccga gaataacgcc cataatcagc gataacacaa
     4081 ctaccagaca gccaaccagc agcgacaggc gcgcaccgta catcaggcgc gacagcatat
     4141 cacggcctac gtcatcggtg cccagcaagt gcgccatgct gccgccttcc tgccaggctg
     4201 gcggggcgag cagtgcatcg cggaactgtt ccgccgggtt atagggtgca atccagttgg
     4261 caaagatcgc gatgaacagc acgatgacga cgtaaaccag cccgacgacc gcgcctttgt
     4321 tgcgtttaaa atagtgccag aactcctgta acggggtcat cggcaccggt gcgctaatca
     4381 ctttattttc agtaacctgt gacatgatgt ccccttactt cttatgacga atacgcgggt
     4441 tcaccacgcc gtacagcaga tcgaccagca agttgacgag gataatcatc gtcgccacca
     4501 gcaatacgcc gccctgcact accggatagt cgcggcgttg cagtgcgtca atcaaccagc
     4561 gtcccagacc gggccacgag aagatggttt cggtcagaat cgcccccgcc agcaatgttc
     4621 ccacctgcag gccgataacg gtcaccaccg gcagcatcgc gttacgcagc gcatggacga
     4681 taatcacccg catgcgggtt agccctttgg cgcgcgcggt gcggatgtaa tcctcgccca
     4741 gcacttccag catcgaggag cgtgtcatac gcacaatgac cgccagcgga atagtaccca
     4801 gcacaatggc aggtaagatc atatgggcga cggcatcgat aaagttgccg tcttcacccc
     4861 agatggcggt gtcgattagc ataaaaccgg ttaacggatt ggagtcatcg aggaacacca
     4921 tatcgctcac gcgaccggag acgggcgtca ggttccagtg caccgaaacc agcatgatca
     4981 gcatcatgcc ccaccagaag atcggcatcg agtagccggt cagcgccagg ccaactgcag
     5041 tgtgatcgaa aatggaaccg cgtttaaccg cagccagcac accaaccgga ataccgactg
     5101 ccgtagcaaa aatcatcgcg cagacgccaa gttccagcgt ggcctgaaag cgcggcacga
     5161 actcttccca tactggaatt cggcttttca ttgaaatgcc tagatcgccg tgcattacgc
     5221 cccaaatgta atggagatac tgctgccaca tcggtttatc taagccgagt tcagccagca
     5281 gctgcgcgtg acgctcaggg gagatcccac gttcgcctgc catgatcatc accggatcgc
     5341 ccgggatcat gtggacaaag gcaaatgtga gaagggtaat accgataaac gtggggatga
     5401 cgagtcccaa acgtcggaga ataaactgca acataacccg gattctctat agtgacccgc
     5461 agcctggaac tgcgtgtctg tattgctcac aaatcaattc ccgcccttgt cggacagaga
     5521 atgaagtatt gctgccggat ggcgctgcac gcagaggcac agcgccaccg ggtatacaga
     5581 ttgttgacaa agtgcgcttt gtttatgccg gatgcggcgt taacgcctta tccggcctac
     5641 aaaatcgtgc aaattcaata cattgcagaa ttttcgtagg cctgataagc ggagcacatc
     5701 aggcagtttt gcctttacca tcagtcttgt atggctttta attattcgat agagacattt
     5761 tcgaagtgat gtttgcctaa tggatcaacc acatagcctt tgacttcttt gcgtaccggt
     5821 tcaaacacgg tggagtgagc gatgatcagt gccggagcct gatcgtgcat caccacctgc
     5881 gcttgcttgt acagttcaac gcgtttgtta tggtcgtcgg tagcacgcgc cggttgaatc
     5941 agatcttcaa acggtttgta gcaccatttt gagtagttag aaccttgttc agaggcggcg
     6001 cagctgaaca gggtggcgaa gaagttatcc gggtccccgt tatcgccagt ccagcccatc
     6061 attaccgtct gatgttcgcc atctttcgca cgcttgaggt actcacccca ttcgtaggtg
     6121 acgattttgg cctgcacgcc cactttcgcc cagtctgcct gaatcatctc cgccatgcgg
     6181 cgagcgtttg ggttatacgg acgttgttcc ggcatcgccc acaggtcgat ggagaaacct
     6241 ttttccagac ccgcttcttt cagcaaggct ttcgcttttt caggatcgta ggtgtaatcc
     6301 tgaacgtcgt cgttatagcc ccacatggtt ggcgggatca ggtttttcgc tgatacaccc
     6361 gcgccctgat aaaccgcttt gatgatcgcg tctttgttca ccgcgtaggt cagtgcctgg
     6421 cgaactttca cgtcatccag cggttttttc tgcacgttat acgagaggta gccgacgttc
     6481 agccccggca tttccatcag gttgatggat ttatcctgct tcatgcgagc gatatctgcc
     6541 gggttcgggt acggcatcac ctggcattca ttcttctgca atttcgcgta acgcacggaa
     6601 gcatcagggg taatagagaa gaccagcgta tcgatctgcg gtttggtgcc ccagtagcca
     6661 tcaaacgctt tgtagcggat acgggaatct ttttggtact gctgtaactg gaacggaccg
     6721 gttccgattg ggttgaggtc cagtttttcc ggtgtaccgg ctttcatcat cgcatcagca
     6781 tattcttttg acagaataga ggcgaagtcc attgccagat cagcgaggaa cggcgcttcc
     6841 gggcgagtca gtacgaactg aactgtgttg tcgtccacct ttttcacttc actgatcagc
     6901 tccggcaagc ccatgccttc gaagtattcg tagctgccgc cagagacttt atggtacggg
     6961 ttttgcgcgt ttttctgacg gtcgaacgag aacaccacgt catcggcgtt cagttcacgc
     7021 gtcggtttga attctttatt gtcgtgccac ttcacacctt tacgcagatg gaaggtatag
     7081 attttaccgt cttagctgac ttcccacttt tcagcgaggc ccggtatcac ttcagtggtg
     7141 ccgattttaa attcaaccag gcggttataa agcggtacgg aagaggcgtc ataggtggtg
     7201 ccggaggtaa acagctgcgg gttaaaccct tccggagatc cttctgagca ataaaccaga
     7261 gttttagcct gaacacttgc tgcgacggtc atagccacca ggctgagacc aagcttcagc
     7321 atccctgact ttttcaagga aatacgcatt attctgctcc aattgtgatg tttgttgttt
     7381 taaccctttg cagtgggttg tcgctgcctg accttttttg ttttttgccc ggtcgggtca
     7441 acgttatgag gtggggatgc cgtactaatt aacatcagtg taacagtgcg gatcctccat
     7501 aaaatgcccc tcgtgaccta caatctgtca acagaatgtg aaaacgtcaa tacagccaac
     7561 cgggatttac accaacggtg agaatccaca aacaaagatt aaaaaaactt caaacagcta
     7621 tttgcagcag agaaatttgt gctactccaa cataaccaga acaatcagct taatatttag
     7681 caacatttgg tgattaagtt ttatgaattt aatgaaaaaa atctgaggaa aaggtggata
     7741 tctgagcgat taataccatg aacgctaaaa cgcacagcgg aaaatgccag cgccagccat
     7801 aagtaacgca aaaaaagatt taagcaaata taaaaaaaga caatggtttc tgtcacaaat
     7861 ccgttaatgg atagtgagat atggggcgca aagttggcag gaaaatgtgt ggtgtgttgg
     7921 tcgaataagg cggtcgcgcc gcatccgaca ataagtgcgg tgccgttgcc tgatgcgacg
     7981 ctggcgcgtc ttatcaggcc tacgtcgagt cgaacctccc agcccccgga ggttctcatc
     8041 ctcatgggct tcaaatgcaa aaaagcctgc tcgctgagca ggcttttcga atttggtcgg
     8101 tgatagagga ttcgaacctc cgaccccttc gtcccgaacg aagtgcgcta ccaagctgcg
     8161 ccaatcaccg aatgcggggc gcatcttact gcgcagatac gccctcgtca atcccttaat
     8221 agcaaaatgc cttttgatcg gcgagaaagt cagcaggccg cttagttagc cgctgcctct
     8281 tttgcctgcg ggatgtgaca ccagttgttg ttttcgttaa ttccaccatc cggtgaagta
     8341 tagccaagac aacccatgat ggtatcgtac agctctacgt gacggcgtgg cactttcatg
     8401 tcggcttctt ttttcagctg cgcaaatgcc tgcgcattgg ccggattttc cagatattta
     8461 tctgacatcc agaccatcat cggtacgcgg aactgctccg gcggtgccaa ttcacgcggc
     8521 gtgccgtgca ggtgctcgcg ttcattaatt gactcaccgt ggtcagctgc gtagaacaca
     8581 atcgctttct tatcgcgaac ctgatcaatc acgctggaga taaagtgatc cacataggtc
     8641 accgagttgt cataggagtt gatcatctgc gctttggtac agccgctatc aacaccaata
     8701 cattccggct tccactgcgc gaagctacgc ggataacgct gggtgtagtt aaaatgcgaa
     8761 cctttggtat gcagaatgat cagatgctta ccatccgggt tgcgccctag cgattgctgc
     8821 atttcgtcta ccagcaacat atcatctacc ggcttgccac gattacgtgg ctccgcacca
     8881 atctgctcac gataagcaat gttgtccgcc atcgtgttgc tgtagaacca catttcgctc
     8941 tgcatagcgt agaggtcaga actgaatcct aactgcttca gaaccgcgaa aatgttctgt
     9001 tcttttaatg tgcgctgcgg attatcttcc gcgcccccct gacgtacaaa catgcaacgc
     9061 agtgagagtt tggttgcggt atcacaggag taaccacgga acgccgccag atttttctcc
     9121 tgggccagtt tcggcgtggt attacgctca tagccgaaaa tacccatatg gtcccaacgc
     9181 gtggtttcac cgatgataaa cacgacataa gtatcatcaa cgttttgtgg agcctggtat
     9241 gtaaacttct tcgccggatt aagcaatgaa ttattatcgg aagattcatc gacccgcgcc
     9301 caggcataca gccccaacgc agaaagccag tttgatggca gataagagtt cgctacgaca
     9361 ccgccataac tcggcaaatc aacgccggtc gccctctcca ctttcttctg ctggatatcc
     9421 agcaaacgaa tcggtgccca aaccataata cccgccagta cgacgaccgc caggctgcga
     9481 atacgctgcc ctggggttcg cagttgtcgg agcaaggtgt agcgacaacg gttattccag
     9541 ataaggataa gaggcaatgc actaacggcg attaaccaga gaataaagtt cagaccaaca
     9601 acttcttttg acaggtcgat atcggtggtc atgacggaag cgatgatgcc ataaccaatg
     9661 accacattaa ggaaggtcat gtaatagctg gcacctgcgg aaaagagcac caccagcgat
     9721 gccagaatac gccagctgcg gcggccaaac agcgatagaa gacgtagtaa gaagaaggtc
     9781 accagtacgg tggcggccag ttcaacaaca gcagaaacgc ctttccagac ggtaaaatcg
     9841 tgcgcatagc tgccgaagcg gcgataaaaa accgcgccat tcataaaaag gccaatatag
     9901 attgcaagca aaaagctcag cttctgctgt gtaatcgatt tgatgtatct catgcaaaca
     9961 aaccctggac aaacaggtga taacaccctg cttcgcggct tttcaggccc ggcaggggaa
    10021 aagtgcggag gtagtcagat aagtaaaatc tacacgcgcg aataagtaga ccacagcaaa
    10081 gcgaaaaagt gtggggaaag agtgtgcatg aagcacaaat ttacaaaaat gcaagtttga
    10141 aaagagactt tagcgttaca aaaagcagta aaaagggcca gttaactggc ccttaagatg
    10201 tgaaattatt cgtactgtac agtaaagtcg accgttgcat ctgcgcgacc aatagttgca
    10261 tcgacgcgaa taggcacgta gctggcgata tagttcagtt gatgtgcgcc atcaccgtta
    10321 attgcaaact caaccggtgt cggcgttgta ttttccggga actgttgtac tccagcagcg
    10381 gttttgattt tcagcccaac gcctgtagcg ccacccgcat ccagcgcaaa aagatttgag
    10441 tcgtctgcat tgggtgtacc gtccatagtc acgtaggctc tgaccacttc gctacagttt
    10501 ttcaggccga tggaaaaagg agtgggatta atttccgttc cgattcttac cggctttttg
    10561 agaaccgcgg tgcccatgtc aacctcaacg ctgtctttca ccagttcgca agcaccctgg
    10621 ctgattttaa gggtgaattt caatgttcct ttcggcccta aatccgtggt tgccgcgaat
    10681 gacgaaaagg aaagaggcag caggcataac gcaagtattg ttcgcttcat gactgttact
    10741 ccagttcgac atgtatggta gcaataccgc tataatcccc ggcagcgggt aattttccgg
    10801 tagtgctaac gg
//
LOCUS       DADMHM010000134        10812 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.135, whole genome shotgun sequence.
ACCESSION   DADMHM010000134 DADMHM010000000
VERSION     DADMHM010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10812)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10812)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10812
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.135"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(1..892)
                     /locus_tag="JN125_002958"
                     /pseudo
     CDS             complement(1..892)
                     /locus_tag="JN125_002958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310495.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1266 domain-containing protein"
     gene            complement(1020..2981)
                     /locus_tag="JN125_002959"
     CDS             complement(1020..2981)
                     /locus_tag="JN125_002959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HAY8872662.1"
                     /translation="MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGH
                     LLEQAQPDAYDSRYARWNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHEASEIVHAG
                     DPDREGQLLVDEVLDYLQLAPEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCV
                     SALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVA
                     KDFFEVKAHIVTPADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRISGQPAIV
                     TSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVLDICQKLYETHKLITYPRSDCR
                     YLPEEHFAGRHAVMNAISVHAPDLLPQPVVDPDIRNRCWDDKKVDAHHAIIPTARSSE
                     INLTENEAKVYNLIARQYLMQFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLL
                     GSKERDEENDGTPLPVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQ
                     DKDLKKILRATDGLGTEATRAGIIELLFKRGFLTKKGRYIHSTDAGKALFHSLPEMAT
                     RPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLYQLIDQAKRTPVRQFRGIVAPGSGG
                     SADKKKAAPRKRSAKKSPPADEVGSGAIA"
     gene            complement(2986..4029)
                     /gene="selD"
                     /locus_tag="JN125_002960"
     CDS             complement(2986..4029)
                     /gene="selD"
                     /locus_tag="JN125_002960"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HAY8872663.1"
                     /translation="MSENSIRLTQYSHGAGCGCKISPKVLETILHSEQAKFVDPNLLV
                     GNETRDDAAVYDLGNGTSVISTTDFFMPIVDNPFDFGRIAATNAISDIFAMGGKPIMA
                     IAILGWPINKLSPEIAREVTEGGRYACRQAGIALAGGHSIDAPEPIFGLAVTGIVPTE
                     RVKKNSTAQAGCKLFLTKPLGIGVLTTAEKKSLLKPEHQGLATEVMCRMNIAGASFAN
                     IKGVKAMTDVTGFGLLGHLSEMCQGAGVQARVDYDAIPKLPGVEEYIKLGAVPGGTER
                     NFASYGHLMGEMPREVRDLLCDPQTSGGLLLAVMPEAENEVKATAAEFGIELTAIGEL
                     VPARGGRAMVEIR"
     gene            complement(4146..4697)
                     /locus_tag="JN125_002961"
     CDS             complement(4146..4697)
                     /locus_tag="JN125_002961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H nitroreductase"
                     /protein_id="HAY8872664.1"
                     /translation="MDALELLINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQP
                     WHFFVIEGEGRERFSAVLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCEENHKV
                     PRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYL
                     GTPQLKASTSINVPDPTLFVTYF"
     gene            4858..6714
                     /gene="sppA"
                     /locus_tag="JN125_002962"
     CDS             4858..6714
                     /gene="sppA"
                     /locus_tag="JN125_002962"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707347.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HAY8872665.1"
                     /translation="MRTLWRFIAGFFKWTWRLLNFVREMVLNLFFIFLVLVGVGIWMQ
                     VSGGDSKETASRGALLLDISGVIVDKPDSSQRFSKLSRQLLGASSDRLQENSLFDIVN
                     TIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQY
                     YLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRD
                     DMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGAQGLLEGLTKTGGDTAKYA
                     LENKLVDALASSAEIEKALTKEFGWSKTDKNYRAISYYDYALKTPADTGDSIGVVFAN
                     GAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAA
                     RAAGKPVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGV
                     HTDGVSTSPLADVSITRALPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQ
                     GHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKVKQWHLEYYVDEPTFFDKVMDNMSG
                     SVRAMLPDAFQAMLPAPLASVASTVKSESDKLAAFNDPQNRYAFCLTCANVR"
     gene            6881..7897
                     /gene="ansA"
                     /locus_tag="JN125_002963"
     CDS             6881..7897
                     /gene="ansA"
                     /locus_tag="JN125_002963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HAY8872666.1"
                     /translation="MQKKSIYVAYTGGTIGMQRSEQGYIPVSGHLQRQLALMPEFHRP
                     EMPDFTIHEYTPLMDSSDMTPDDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASALS
                     FMLENLGKPVIVTGSQIPLAELRSDGQINLLNALYVAANYPINEVTLFFNNRLYRGNR
                     TTKAHADGFDAFASPNLPPLLEAGIHIRRLNTPPAPHGEGELIVHPITPQPIGVVTIY
                     PGISADVVRNFLRQPVKALILRSYGVGNAPQNKAFLQELQEASDRGIVVVNLTQCMSG
                     KVNMGGYATGNALAHAGVIGGADMTVEATLTKLHYLLSQELDTETIRKAMSQNLRGEL
                     TPDD"
     gene            7908..8549
                     /gene="pncA"
                     /locus_tag="JN125_002964"
     CDS             7908..8549
                     /gene="pncA"
                     /locus_tag="JN125_002964"
                     /EC_number="3.5.1.-"
                     /EC_number="3.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310502.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional nicotinamidase/pyrazinamidase"
                     /protein_id="HAY8872667.1"
                     /translation="MPHRALLLVDLQNDFCAGGALAVPEGDSTVEVANRLIDWCQSRG
                     EAVIASQDWHPANHGSFASQHGVEPYTPGQLDGLPQTFWPDHCVQNSEGAQLHPLLNQ
                     KAIAAVFHKGENPLVDSYSAFFDNGRRQKTSLDDWLRDHEIDELIVMGLATDYCVKFT
                     VLDALQLGYKVNVITDGCRGVNIQPQDSAHAFMEMSAAGATLYTLADWEETQG"
     gene            complement(8710..8982)
                     /locus_tag="JN125_002965"
     CDS             complement(8710..8982)
                     /locus_tag="JN125_002965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707337.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeaC family protein"
                     /protein_id="HAY8872668.1"
                     /translation="MNLDDIINSMTPEVYQRLSTAVELGKWPDGVALTEEQKENCLQL
                     VMLWQARHNTEAQHMTIDTNGQMVMKSKQQLKEDFGISAKPIAMFK"
     gene            complement(9024..9437)
                     /gene="msrB"
                     /locus_tag="JN125_002966"
     CDS             complement(9024..9437)
                     /gene="msrB"
                     /locus_tag="JN125_002966"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HAY8872669.1"
                     /translation="MANKPSAEELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVY
                     HCLICDAPLFHSETKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHL
                     GHVFPDGPQPTGERYCVNSASLRFTDGENGEEING"
     gene            9779..10774
                     /gene="gapA"
                     /locus_tag="JN125_002967"
     CDS             9779..10774
                     /gene="gapA"
                     /locus_tag="JN125_002967"
                     /EC_number="1.2.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HAY8872670.1"
                     /translation="MTIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYM
                     LKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLT
                     DETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAK
                     VINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKV
                     LPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTE
                     DDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK"
BASE COUNT         2613 a         2837 c         2621 g         2741 t
ORIGIN      
        1 tgccagtaaa gaaatcccat tagactattt ttttgataat cttcttcgct ttcgaacaac
       61 tcgtgcgcct ttcgagaagc aagcattata taatgccagg ccagttcttc ttcaattgtc
      121 ccgttttgaa aagctgtgct tgatatcgag atcatccatg ataattccgc cgcccatatt
      181 agcttcgccg aggatttacc ggagcgatta ttagcgcaat cagagatata gtctgaggga
      241 aaaacagcaa atttattcaa caaggcgata acctgctctg gggcttcctc catgtttgct
      301 ttaaaggtat tggctccatg gtcgccagaa agaaaatgct ccattaaggc acaataactt
      361 tcgctatctt cgatacccca ttgattctct aaagactcgc gtcttttact tatgatatcg
      421 atcgagtcaa aaggaagcac atgatattgg aaggtatctt tgccaggttc aggctttcgc
      481 ggccagaact ccagcgtttc agaccattgc ttatgataga atcgataagg tgcgatcaat
      541 tgtagcgcct gtaacttctc gatactgagc ggctcaatac ctttagcctg ataataatgc
      601 agttgttctt ttttgcttta aaaccggccc gaacaataag ccccatcata attaatagat
      661 aaagaaaaga gcatcccgcg gtaatcaggc ctctttcatt caaaccgttg gatgttatcg
      721 ctgcgaacac aaacattaca gcgacaacac atgttaaata aaacccccac ttacaaagca
      781 gcatggcctt attttcttta atcatccgtt caaaattact attaaatatt tcccagccat
      841 taaaagaata cttctcgctc ccaggatggt tttgtaataa aacttttttc atcacattcc
      901 ctgttattac atactttaga ggcgataatt ttatccatgc aaaaaaaata tccaacgaat
      961 tttcttgatt cgctggatat ttcagaatat gactcgaata gcacgaaaga ttcactcgct
     1021 tacgctatcg ccccgcttcc gacttcatct gctggcggac tttttttcgc actacgttta
     1081 cgcggtgcag cctttttctt atcagcactg ccaccactgc ccggagccac aatgccgcga
     1141 aactgccgca ccggcgtacg tttggcttga tcaataagct gatatagcgt ccccaccagc
     1201 ggctgcataa agtcctgata gcgacactgc ttttcgctga tttgcgtcag caccgattcc
     1261 cagtgcgcgg tcatgtccgg tcgcgtcgcc atttctggca gcgaatggaa taacgctttt
     1321 ccggcgtcgg tagagtggat atagcgccct tttttggtca gaaaaccacg cttgaacagc
     1381 agttcaataa tcccggcacg ggttgcttct gtccccagac catcggtcgc acgaaggatc
     1441 tttttcagat ctttgtcctg cacaaagcgc gcgatcccgg tcatcgccga aagcagtgtt
     1501 gcatcggtaa aatggcgcgg cggctgggtt tgccgctcta ccacttcacc tttttcacac
     1561 agcaactcat cgcctttcgc caccacaggc aatggcgtac cgtcgttttc ttcatcgcgc
     1621 tctttgctgc ctaacagcgt gcgccagcct gcttcagcaa gaaaacgcgc tttagcgaca
     1681 aatttgcctt tggcaatgtc cagttcgata acacacttgc ggaacaccgc atccgggcag
     1741 aactgcatca agtactgacg ggcaatcagg ttatagacct tcgcttcgtt ctccgtcagg
     1801 ttgatctcag aactccgtgc ggtcgggatg atggcgtggt gtgcatcgac ctttttgtca
     1861 tcccaacagc ggttgcgtat atctggatct accactggtt gcggcaacag atctggtgca
     1921 tgaacgctga tggcattcat caccgcgtgg cgtccggcaa aatgttcttc tggcaaatag
     1981 cgacaatcgg aacgcggata agtgattagc ttgtgcgttt cgtacagctt ctggcagata
     2041 tcaagcacgt tctgcgcgct cagaccaaag cgttttgccg cttcaatctg caacgccgaa
     2101 agcgaaaaag gcagcggcgc ggattctgat tcccgtttat cgttatagct ggtgacaatt
     2161 gctggttgac cactaatgcg gttaaccaca tgctccgcca gtggacgatg taacaagcgc
     2221 ccttcttcat cctggtacgg ttcacacgct tcgctcggtt gccagatagc ggtaaaccgc
     2281 tcatcggcag gtgtcacgat atgtgctttg acttcaaaga agtctttcgc cacgaagttt
     2341 tcaatctctt catcgcggcg caccaccagc ccgagcacgg gtgtctgcac gcgtcccacg
     2401 gaaagtacgc cctgataacc ggcattgcga ccgagaatgg tatacgcacg ggtcatattg
     2461 atgccgtaca gccagtcggc acgcgctcgc gccagcgcag aaacgcacaa tggcacaaac
     2521 tcactgttgg accgaagacg gtcgatcgcc cgctcaaccg cctgcgggtt caggtcgttt
     2581 atcaagcaac gctgcacctg ctggcgcttt tccggtgcca gttgcagata gtccagcact
     2641 tcatccacca gcagttgccc ttcacgatcc gggtccccgg cgtgaacgat ttcgctggct
     2701 tcatgcagga agcgtttgat gacgttaagt tgtttggtca cggagggtcg gggctgtaat
     2761 tgccactttt ccgggacaat cggcaaatcc gcaagattcc agcgcgcata gcggctgtcg
     2821 taggcgtctg gctgcgcctg ctcaagcagg tgaccgatac accaggtcac cacctgacca
     2881 ttaccgcact cgataaagcc atcgcctttc cggtgcggtt tgggcaggac atcagcaatg
     2941 gcgcgcgcca gactcggttt ttcggcaata aacaaccgca ttgaattaac gaatctcaac
     3001 catggcacga ccgccgcgcg ctggcaccag ttcgccaatt gccgtcagtt caatgccaaa
     3061 ctcggcggct gtagctttga cctcattttc tgcttccggc atgaccgcca gcagcaaacc
     3121 gccagaagtt tgcggatcgc acagcaaatc gcgcacttca cgcggcattt cacccatcag
     3181 atgaccgtag ctggcaaagt tacgttcggt gccgccaggc actgcgccca acttaatgta
     3241 ctcttcaacc cccggcaatt ttgggatcgc gtcatagtca acgcgcgcct gcacacctgc
     3301 gccctgacac atttcgctca aatggcccag cagaccaaag cccgtaacgt cggtcatcgc
     3361 ttttacgcct ttgatgttgg caaaggacgc gcctgcgatg ttcatccggc acatcacttc
     3421 cgtcgctagt ccctgatgtt ctggtttcag cagtgatttt ttctcagccg tggtaagaac
     3481 gccgatcccc agcggtttcg tcaggaacag tttgcatccg gcttgtgcgg tactgttttt
     3541 cttcacccgc tcggtcggta cgatccccgt taccgccaga ccaaaaatcg gctccggcgc
     3601 atcgatggag tgaccgccag ccagcgcaat acccgcctga cggcatgcat agcgtccacc
     3661 ttcggttact tcgcgggcaa tttccgggga aagtttgtta atcggccagc cgaggatcgc
     3721 aatcgccata atcggtttgc cccccatcgc gaagatatcg ctgatggcgt tagtcgccgc
     3781 aatgcggcca aaatcgaaag gattatcaac gatcggcata aagaagtcgg tggtactgat
     3841 aacgctggtg ccattgccca gatcgtacac cgccgcatcg tcgcgggtct cattacccac
     3901 aagcaaattc ggatcaacaa acttcgcctg ctcactgtgc aggatggttt ccaacacttt
     3961 tggggaaatt ttacagccgc aaccagctcc gtggctgtat tgggtcaaac gaatcgagtt
     4021 ctcgctcatg gacatctcct gtcaatgcaa tccgggtatg gtaaccctca ttccgtgaag
     4081 tgataagtga gagtgtctga attcctgcgc ctttgctcac aatccagaca gtttcgcgac
     4141 aattatcaga aataagttac aaacagcgtc gggtccggga cgttaatcga cgtagatgct
     4201 ttcaactgcg gcgtgccgag gtagagaaaa ccgacaattt tatcctgctc acggcaaccg
     4261 aatgcttcac gcactaccgg actttcagtt aatgcgccac tgcgccagat gccgccaaat
     4321 ccctgggcaa cggctgccat ttgcatcgcc atgaccgcgc atccggcaga catttcctgt
     4381 tcccatcgcg ggactttatg attttcttcg catttcgcca ccaccgtgat gatgagcggt
     4441 gcgcggaacg gcgcattacg ggctttgtcg atagctttgt catcactacc ggcagcaatc
     4501 gccccctgtt ccagtacggc gctgaaacgc tcgcgccctt ccccttcaat cacaaaaaaa
     4561 tgccacggtt gcatggactt atggtccggc gcacgcatac ccgcacgcag gatgttttgc
     4621 agttgttcac ccgttggcgc gggttcagcc aggcgggagg cgctacggcg attgatcaat
     4681 agttcgagtg catccatttg attaactcct gtcgtgatat ttattcacaa aattaacacg
     4741 agagtggatt ttgttacagc acagtccgca attcctgctg acaagtgccg gttgggtcat
     4801 tacgataacc acatctattg cgcctgtgac aggtgtgacc ttaagttggg agaatacatg
     4861 cgaacccttt ggcgatttat tgccggattt tttaaatgga cgtggcgtct gctgaatttc
     4921 gtccgtgaaa tggtacttaa cctgttcttt attttcctcg tactggttgg tgtggggatc
     4981 tggatgcagg tcagtggtgg tgattcgaaa gaaacggcca gtcgtggcgc actgctgctg
     5041 gacatttccg gtgtgatcgt cgataaaccc gacagttctc agcggtttag taaattaagc
     5101 cgccagctgc ttggtgccag ttccgatcgt ctgcaggaaa actcactgtt tgatatcgtc
     5161 aacaccattc gccaggcgaa ggacgaccgc aatatcaccg gtatcgtgat ggatctgaaa
     5221 aacttcgcag gcggcgacca gccgtctatg cagtacatcg gcaaagccct gaaagagttt
     5281 cgtgacagcg ggaaaccggt ttatgccgtt ggcgagaact acagccaggg gcaatattat
     5341 ctcgccagtt tcgccaataa aatttggctg tcaccgcaag gcgtggttga tctgcacggt
     5401 tttgctacca acggtctgta ctacaaatcg ttgctggata agctgaaagt ttccacccat
     5461 gtgttccgcg tgggtacgta taaatctgcc gttgaaccgt ttattcgtga tgatatgtca
     5521 ccggcagccc gcgaagctga cagccgctgg attggtgagc tgtggcaaaa ctatctgaat
     5581 actgttgccg ctaaccggca gatccctgct cagcaggtat tccctggcgc gcaagggttg
     5641 cttgagggtt taaccaaaac cggtggcgat accgcgaaat atgcactgga aaacaagctg
     5701 gtcgatgcac tggcatcgag tgccgaaatc gaaaaagctc tgaccaaaga gttcggctgg
     5761 agtaagactg ataaaaatta tcgcgccatc agttattacg attacgcatt gaaaacgccg
     5821 gcagataccg gtgacagcat cggtgtcgtc ttcgctaatg gcgcaattat ggatggcgag
     5881 gaaactcagg ggaatgttgg cggtgatacc actgcggcac aaatccgcga cgctcgcctt
     5941 gacccgaaag tgaaagcgat tgtcctgcgt gttaatagcc caggcggcag cgttaccgcg
     6001 tctgaagtga ttcgcgctga actggcagca gcccgggcag cgggtaagcc tgtggttgta
     6061 tcgatgggcg gcatggcggc atctggtggt tactggattt ccacgccagc taattacatt
     6121 gtggctaacc ccagcaccct gaccggttct atcggtatct tcggcgtgat caccaccgta
     6181 gaaaatagtc tggattcgat tggtgttcat actgatggtg tctcaacttc accgctggcg
     6241 gatgtttcta tcaccagggc actgccgccg gaagcgcagc agatgatgca attaagcatt
     6301 gagaatggct ataaacgctt tatcacgctg gttgctgatg cgcgtcattc gacgccggag
     6361 caaattgata aaatcgccca gggccacgtc tggaccggtc aggatgcaaa agctaacggg
     6421 ctggtcgata gtctcgggga tttcgatgat gcggttgcca aagcagcaga gctcgcaaaa
     6481 gtgaaacagt ggcatctgga atactacgtt gatgaaccga ccttcttcga caaagtgatg
     6541 gacaacatgt ctggttctgt ccgggcaatg ttgccagatg cgttccaggc catgttacct
     6601 gcaccgcttg cctcggtagc ctctaccgtt aaaagtgaaa gcgacaagct ggccgcgttt
     6661 aacgacccac aaaaccgtta tgcgttttgc ctgacctgcg ccaacgtgcg ttaagtcttg
     6721 tactgagtgg ccgacagatc gtcggccaca ttatttttta cctcgacgaa tcctcttccc
     6781 gctgtctcgc cccatatttc cttatccgca tagtatcagg tgcgctcctc ctgcctcacg
     6841 tatatacttt tgctctttcg atatcattca tatcaatatc atgcaaaaga aatcaattta
     6901 cgtcgcctac acgggcggga ccatcgggat gcagcgttcc gagcagggtt atattccggt
     6961 gtcaggtcat ctacaacgcc aactggcgct gatgccggaa ttccatcgcc cggagatgcc
     7021 agatttcacc attcatgaat atacgccgtt gatggattct tctgatatga cgccggatga
     7081 ctggcagcat attgctgaag atattaaagc gcactatgac gactatgatg gttttgtcat
     7141 tctacacggt accgacacga tggcgtatac cgcctctgcg ctgtcgttca tgctcgagaa
     7201 tctcggtaaa ccggtcattg tgacagggtc acaaatcccg ctggctgagt tacgctctga
     7261 cggacaaatt aatctgctga atgcgttgta cgttgcggcg aattatccga tcaacgaagt
     7321 aacgctcttt ttcaataacc gattgtatcg cggcaaccgc actaccaaag cccatgccga
     7381 tggttttgat gcgtttgcct ctccaaacct tcctccgtta ctggaagctg gtatccatat
     7441 tcgtcgtttg aatacgccac ccgccccgca cggtgaaggg gaattaatcg ttcatccaat
     7501 cacgccacaa ccaattggcg tagtgacgat ttatccgggg atttctgctg atgtcgtgcg
     7561 caattttctg cgccaaccgg tgaaagcatt gattctgcgc tcctatggcg tgggtaatgc
     7621 gccacaaaac aaagccttcc tgcaggaatt acaagaagcc agcgatcgcg gtattgtggt
     7681 ggtcaacctg acacaatgta tgtccggtaa agtgaatatg ggtggttatg ccaccggtaa
     7741 cgccctcgcc catgccggcg ttattggcgg tgcagatatg actgtagaag ccacgctaac
     7801 caaactgcat tacctgctga gccaggaact ggatactgaa accattcgca aggccatgag
     7861 ccaaaacctg cgcggcgaac tgacgccgga tgattaagga gactgcaatg ccccatcgcg
     7921 ccctgttact ggtcgattta caaaatgatt tctgtgctgg tggcgcgctc gccgtaccgg
     7981 aaggtgacag tacggtggag gttgctaacc gccttattga ctggtgccag tcgcgcggag
     8041 aagcggttat cgccagccag gactggcatc cggcgaatca cggcagtttt gccagtcagc
     8101 acggtgtaga gccttatacg ccaggccaac tcgacggttt gccacaaacc ttctggccag
     8161 atcactgtgt gcagaacagt gaaggcgcac aattacatcc gttactgaac caaaaagcga
     8221 tcgcagcggt gttccataaa ggcgaaaatc ctttagttga cagttacagt gccttttttg
     8281 ataacggccg tcggcagaaa acctctctcg atgactggtt acgcgatcat gaaatcgatg
     8341 aattgatcgt tatgggcctg gctactgact attgcgtgaa gtttaccgtg ctggacgcgt
     8401 tacagttagg ttataaggtg aacgtgatta ccgatggttg tcgtggcgtg aatatccagc
     8461 cccaggacag tgcacacgcg tttatggaga tgtcagcagc tggggcaacg ctatatacgc
     8521 tggcagactg ggaagagaca caggggtaat attagttgaa ttcatctctg gcctacattt
     8581 cctcaatgac attgtaggcc agataatact tgtcagtgtt gcatttaacc tacttgcagc
     8641 taaaacacga cgtccgaaca agtatatttg ccctccctta ataacaggct taaatactag
     8701 ataactcatt cacttaaaca tagcaatagg ctttgctgag ataccaaaat cttcttttaa
     8761 ctgctgtttg ctcttcatga ccatctgacc atttgtgtca attgtcatat gctgtgcttc
     8821 ggtattatgg cgggcttgcc acagcatcac cagttgcagg caattctctt tttgttcctc
     8881 ggtcaacgca acgccatcag gccatttccc cagttcaacg gcggtcgaca aacgctggta
     8941 tacctcaggc gtcatgctgt tgataatgtc atcaagattc ataatttttc cgctcctgtg
     9001 gaataagttg ctgaatcgtt ttttcaaccg ttgatttctt cgccgttttc gccatcagtg
     9061 aagcgtaaag aagcagagtt aacacaataa cgttcgcctg ttggttgcgg cccgtcggga
     9121 aagacatgcc ccagatgggc atcacagtta ccgcaacgaa tttctatgcg ctgcattcca
     9181 tgtgacaagt ctttgatata acgaatggat tcttcactca ccggttcgta gaaactgggc
     9241 cagccacagc cggaatcata cttggtttcg gaatgaaaca gcggggcatc gcagatcaaa
     9301 cagtgatata cgccgtcacg cttgttatgc agtaaacgcc ccgtaaatgg cggctctgtc
     9361 ccatgattct gcgtcacgta aaactgcatc tcggacaaat tttttttcag ttcttctgcc
     9421 gaaggtttat tagccatttg ctcacatctc actttaatcg tgctcacatt acgtgactga
     9481 ttctaacaaa acattaacac caactggcaa aattttgtcc taaacttgat ctcgacgaaa
     9541 tggctgcacc taaatcgtga tgaaaatcac atttttatcg taattgccct ttaaaattcg
     9601 gggagccgac cccatgtggt ttcaagccca aaggaagagt gaggcgagtc agtcgcgtaa
     9661 tgcttaggca caggattgat ttgtcgcaat gattgacacg attccgcttg acgctgcgta
     9721 aggtttttgt aattttacag gcaacctttt attcactaac aaatagctgg tggaatatat
     9781 gactatcaaa gtaggtatca acggttttgg ccgtatcggt cgcattgttt tccgtgctgc
     9841 tcagaaacgt tctgacatcg agatcgttgc aatcaacgac ctgttagacg ctgattacat
     9901 ggcatacatg ctgaaatatg actccactca cggccgtttc gacggtaccg ttgaagtgaa
     9961 agacggtcat ctgatcgtta acggtaaaaa aatccgtgtt accgctgaac gtgatccggc
    10021 taacctgaaa tgggacgaag ttggtgttga cgttgtcgct gaagcaactg gtctgttcct
    10081 gactgacgaa actgctcgta aacacatcac cgctggtgcg aagaaagtgg ttatgactgg
    10141 tccgtctaaa gacaacactc cgatgttcgt taaaggcgct aacttcgaca aatatgctgg
    10201 ccaggacatc gtttccaacg cttcctgcac caccaactgc ctggctccgc tggctaaagt
    10261 tatcaacgat aacttcggca tcatcgaagg tctgatgacc accgttcacg ctactaccgc
    10321 tactcagaaa accgttgatg gcccgtctca caaagactgg cgcggcggcc gcggcgcttc
    10381 ccagaacatc atcccgtcct ctaccggtgc tgctaaagct gtaggtaaag tactgccaga
    10441 actgaatggc aaactgactg gtatggcgtt ccgcgttccg accccgaacg tatccgtagt
    10501 tgacctgacc gttcgtctgg aaaaagctgc aacttacgag cagatcaaag ctgccgttaa
    10561 agccgctgct gaaggcgaaa tgaaaggcgt tctgggctac accgaagatg acgtagtatc
    10621 taccgatttc aacggcgaag tttgcacttc cgtgttcgat gctaaagctg gtatcgctct
    10681 gaacgacaac ttcgtgaaac tggtatcctg gtacgacaac gaaaccggtt actccaacaa
    10741 agttctggac ctgatcgctc acatctccaa ataagttgag atgaaactgt gatctaaaaa
    10801 gagcgacttc gg
//
LOCUS       DADMHM010000135        10467 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.137, whole genome shotgun sequence.
ACCESSION   DADMHM010000135 DADMHM010000000
VERSION     DADMHM010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10467)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10467)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10467
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.137"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(31..1929)
                     /locus_tag="JN125_002968"
     CDS             complement(31..1929)
                     /locus_tag="JN125_002968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShET2/EspL2 family type III secretion system
                     effector toxin"
                     /protein_id="HAY8872671.1"
                     /translation="MSQNDIIIRTHYKSPHRLHIDSDIPTPSSELINQFARQLITLLD
                     TSDLSSMLSYCITQEFTANCRKISQNCYSTALFIINFATSPIHAENILITLHYKKEII
                     PLFLETTPIKANHLRSILDYIEQEQLTAEDRNHCMKLSKKSHREKTIQPTVNLNGSAC
                     FLQSPSDAIFCRHLSLQYALDSLRNGKGKVNLIKHYSSVESIQQHVPLVRDAEFRALL
                     RHPPAGSRVIASKDFGFALDIFFCRMMANNVSHMSAILYIDNHTLSVRLRIKQLVYGQ
                     LNYVVSVYDPNDTNVAVRGTHRTARGFLSLDKFISSGPDAQSWADRYVRNCAIAILPL
                     LPVGVPGAIFAGIASRMPFAPIHPSAMLLIMATGQTQQLITLFKQLPILPEKEIIEII
                     TAQNSVGTPALFLAMMNGHTDNVKIFMQEIQSLIYNHIIHEDNLVKLLQTKSANETPG
                     LYISMLYGFDETIDIFLNALTTPIAQELLNKKIVMDILAMKTRDGELGLFAAMENNHP
                     LCVTRFLSKINGIAFKYKLSKANIMDLLKGATAHGTPVLYIAMSKGNEDVVLSYISTL
                     NIFAKKYSFSQRQLFTLLAAKNHDNMSAVHIAIHHNHYKTVKTYYAAINVISQSLSFS
                     ADELKTYL"
     gene            2451..4379
                     /gene="thrS"
                     /locus_tag="JN125_002969"
     CDS             2451..4379
                     /gene="thrS"
                     /locus_tag="JN125_002969"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010245687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HAY8872672.1"
                     /translation="MPVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGEL
                     VDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGF
                     YYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHAARETFANRGESYKVSIL
                     DENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRI
                     YGTAWADKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRE
                     LEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNC
                     PGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQ
                     IRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNI
                     PFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPV
                     MIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAG
                     IRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEV
                     IEKLQQEIRSRSLKQLEE"
     gene            4383..4925
                     /gene="infC"
                     /locus_tag="JN125_002970"
     CDS             4383..4925
                     /gene="infC"
                     /locus_tag="JN125_002970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HAY8872673.1"
                     /translation="MKGGKRVQTARPNRINGEIRAQEVRLTGLEGEQLGIVSLREALE
                     KAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKSSKEQKKKQKVIQVKEIKFRPGT
                     DEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQQIGMEVLNRVKDDLQELAVVES
                     FPTKIEGRQMIMVLAPKKKQ"
     gene            5022..5219
                     /gene="rpmI"
                     /locus_tag="JN125_002971"
     CDS             5022..5219
                     /gene="rpmI"
                     /locus_tag="JN125_002971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006708231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HAY8872674.1"
                     /translation="MPKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHL
                     RPKAMVSKGDLGLVIACLPYA"
     gene            5272..5628
                     /gene="rplT"
                     /locus_tag="JN125_002972"
     CDS             5272..5628
                     /gene="rplT"
                     /locus_tag="JN125_002972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016169860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HAY8872675.1"
                     /translation="MARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQ
                     YAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFD
                     KVAFTALVEKAKAALA"
     gene            5751..5795
                     /locus_tag="JN125_002973"
     CDS             5751..5795
                     /locus_tag="JN125_002973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanyl--tRNA ligase operon leader peptide"
                     /protein_id="HAY8872676.1"
                     /translation="MNAAIFRFFFYFST"
     gene            6078..7061
                     /gene="pheS"
                     /locus_tag="JN125_002974"
     CDS             6078..7061
                     /gene="pheS"
                     /locus_tag="JN125_002974"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004851795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HAY8872677.1"
                     /translation="MSHLAELVASAKAAISQASDVAALDNVRVEYLGKKGHLTLQMTT
                     LRELPPEERPAAGAVINEAKEQVQQALNARKAELESAALNARLAAETIDVSLPGRRIE
                     NGGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF
                     DTTRLLRTQTSGVQIRTMKAQQPPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDTNI
                     SFTNLKGTLHDFLRNFFEEDLQIRFRPSYFPFTEPSAEVDVMGKNGKWLEVLGCGMVH
                     PNVLRNVGIDPEVYSGFAFGMGMERLTMLRYGVTDLRLFFENDLRFLKQFK"
     gene            7076..9463
                     /gene="pheT"
                     /locus_tag="JN125_002975"
     CDS             7076..9463
                     /gene="pheT"
                     /locus_tag="JN125_002975"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012905611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HAY8872678.1"
                     /translation="MKFSELWLREWVNPAIDSDALANQITMAGLEVDGVEPVAGSFHG
                     VVVGEVVECAQHPNADKLRVTKVNVGGDRLLDIVCGAPNCRQGLRVAVATIGAVLPGD
                     FKIKAAKLRGEPSEGMLCSFSELGISDDHCGIIELPADAPIGTDIREYLKLDDNTIEI
                     SVTPNRADCLGIIGVARDVAVLNQLPLVEPEIVPVGATIDDTLPITVEAPEACPRYLG
                     RVVKGINVKAPTPLWMKEKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEGGI
                     VVRMAKEGETLVLLDGTEAKLNADTLVIADHNKALAMGGIFGGEHSGVNDETQNVLLE
                     CAFFSPLSITGRARRHGLHTDASHRYERGVDPALQHKAMERATRLLIDICGGEAGPVI
                     DITNEATLPKRATITLRRSKLDCLIGHHIADEQVTDILRRLGCEVTEGKDEWQAVAPS
                     WRFDMEIEEDLVEEVARVYGYNNIPDEPVQASLIMGTHREADLSLKRVKTLLNDKGYQ
                     EVITYSFVDPKVQQMIHPGVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNR
                     VRIFESGLRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESV
                     LDLTGKLNEVEFRAEANPALHPGQSAAIYLKGERIGFVGVVHPELERKLDLNGRTLVF
                     ELEWNKLADRVVPQAREISRFPANRRDIAVVVAENVPAADILSECKKVGVNQVVGVNL
                     FDVYRGKGVAEGYKSLAISLILQDTSRTLEEEEIAATVAKCVEALKERFQASLRD"
     gene            9468..9767
                     /gene="ihfA"
                     /locus_tag="JN125_002976"
     CDS             9468..9767
                     /gene="ihfA"
                     /locus_tag="JN125_002976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integration host factor subunit alpha"
                     /protein_id="HAY8872679.1"
                     /translation="MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQV
                     KLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE"
     gene            complement(10071..10211)
                     /locus_tag="JN125_002977"
     CDS             complement(10071..10211)
                     /locus_tag="JN125_002977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000078918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hok/Gef family protein"
                     /protein_id="HAY8872680.1"
                     /translation="MSQKSLTAITFCVTAILIIWMLHGSLCEIRMSFWGAEFAAFLQC
                     KQ"
BASE COUNT         2752 a         2367 c         2666 g         2682 t
ORIGIN      
        1 caataagttg gcagcattac caatagttgg ttataaatac gtctttagtt catcagcact
       61 aaaactcagg ctttggctga ttacatttat agcagcataa tatgttttta cagttttata
      121 atgattatga tgaatggcta tatgaacagc tgacatgttg tcatgatttt tagcggccaa
      181 cagtgtgaat aactgacgtt gactaaaaga atattttttt gcaaaaatat tcagcgtcga
      241 tatataagat aacacgacgt cttcattacc cttgctcatg gcgatgtata atacaggggt
      301 tccatgtgct gtagcgcctt ttaataaatc catgatgtta gctttgctca acttgtattt
      361 aaaggcgatg ccattaattt tagagaggaa ccgtgtgaca cacaaagggt gattattttc
      421 cattgcagca aacaacccta gttcaccatc acgtgttttc attgctaaaa tatccatcac
      481 tatttttttg tttaaaagct cttgtgctat tggagtggtt aatgcattca gaaagatatc
      541 gattgtttca tcgaacccat acaacatgga gatatagagc ccaggtgttt cgttagcact
      601 tttagtttgc agtaatttaa ccagattatc ttcatgaatg atatgattgt atatcagtga
      661 ctgaatttct tgcataaata tttttacgtt gtcagtatgt ccgttcatca tagccagaaa
      721 taaagcaggt gtaccaacgc tattctgcgc agttattatt tcaatgattt ctttttcagg
      781 gagtatgggc aactgtttga ataatgtaat aagctgttga gtctggcctg tggccattat
      841 taacaacatt gccgatggat gtataggggc aaatggcatt cgtgatgcaa tacccgcgaa
      901 aatagcccct ggaactccca caggtaatag gggcagaata gcaattgcac agttgcgaac
      961 atacctgtca gcccagctct gagcatcggg acctgaactg atgaacttat caagcgaaag
     1021 aaagccccgt gctgtcctgt gggtgcctct gacggcaacg ttggtatcgt tcgggtcgta
     1081 gacggacact acatagttta attgtccata cactaactgc tttattcgta gccttactga
     1141 caaagtatga ttgtctatat ataaaatcgc ggacatatga ctgacattgt ttgccatcat
     1201 tcgacaaaag aaaatatcta aagcgaagcc aaaatcctta ctcgcgataa cgcgactccc
     1261 tgcaggagga tggcgaagta atgctctgaa ctccgcatcc cggactaagg ggacatgctg
     1321 ctgtatggat tcaacggagg agtaatgttt aatcaggttg actttgcctt ttccatttct
     1381 caatgaatca agggcgtatt gcaatgacag atggcgacaa aaaatagcgt cagaaggaga
     1441 ttgcaaaaaa catgcactac cattgagatt tactgttggt tgtatagttt tttctctatg
     1501 gcttttttta gacagtttca tacaatggtt acgatcttcg gcagttaact gttcctgctc
     1561 aatataatcc agtatgcttc gcaaatggtt agccttaata ggcgtggttt ccagaaataa
     1621 gggaatgatt tcttttttat agtgtaatgt aataagtata ttttctgcat ggatgggtga
     1681 agtggcaaag ttaatgataa aaagggcagt ggagtaacaa ttttgtgata tttttcgaca
     1741 gtttgcggta aattcctgag taatacagta tgacagcatc gaacttaagt cagaggtatc
     1801 aagtagggtg atgagttggc gcgcaaattg attaataagc tctgatgaag gcgttggtat
     1861 gtcgctatcg atgtgcaatc tatgaggaga cttataatga gttctgataa tgatatcgtt
     1921 ttgactcata atctattcac cttatatata ctggaggttt tgaggatgat gattaattat
     1981 tatcgccaga acgaaatgtg cacgaaaaat tgctataaga attgtgtcac ttttatcatt
     2041 gtgatatgac cacttcgtca ttaatctcat gatcgtttaa atactaccgc caaatcacgc
     2101 aacgaacttt gctggattca gtttatgctg ctgtaaatcc gctcgcagta aacctttcag
     2161 acgcaccgtg atgttatcag tggttcttta agcgttttgc tggtgtactc actacaaacg
     2221 aattgcgaat cgaatcaatg tgaaacggaa aggtacaatc tccctttttt tagtgttaac
     2281 atcgttcaac cgggtggaag gtgagaggtt aatgtctttc atttgtgtac ctgattgcga
     2341 accaatttag catttgttgg ctagatggtt tcgcaatgaa ctgttaataa acaaattttt
     2401 ctttgtatgt gatctttcgt gtgggtcacc actgcaaata aggatataaa atgcctgtta
     2461 taactcttcc tgatggcagc caacgccatt acgaccacgc tgtaagcccc atggatgttg
     2521 cgctggacat tggtccaggt ctggcgaaag cctgtatcgc agggcgcgtt aatggcgaac
     2581 tggttgatgc ttgcgatctg attgaaaacg acgcacaact gtcgatcatt accgccaaag
     2641 acgaagaagg tctggagatc attcgtcact cctgtgcgca cctgttaggg catgcgatta
     2701 aacaactttg gccgcatacc aaaatggcaa tcggcccggt tattgacaac ggtttttatt
     2761 acgacgttga tcttgaccgc acgttaaccc aggaagatgt cgaagcactc gagaagcgga
     2821 tgcatgagct tgctgagaaa aactacgacg tcattaagaa gaaagtcagc tggcacgcag
     2881 cgcgtgaaac tttcgccaac cgtggggaga gctacaaagt ctccattctt gacgaaaaca
     2941 tcgcccatga tgacaagcca ggtctgtact tccatgaaga atatgtcgat atgtgccgcg
     3001 gtccgcacgt accgaacatg cgtttctgcc atcatttcaa actaatgaaa acggcagggg
     3061 cttactggcg tggcgacagc aacaacaaaa tgttgcaacg tatttacggt acggcgtggg
     3121 cagacaaaaa agcacttaac gcttacctgc agcgcctgga agaagccgcg aaacgcgacc
     3181 accgtaaaat cggtaaacag ctcgacctgt accatatgca ggaagaagcg ccgggtatgg
     3241 tattctggca caacgacggc tggaccatct tccgtgaact ggaagtgttt gttcgttcta
     3301 aactgaaaga gtaccagtat caggaagtta aaggtccgtt catgatggac cgtgtcctgt
     3361 gggaaaaaac cggtcactgg gacaactaca aagatgcaat gttcaccaca tcttctgaga
     3421 accgtgaata ctgcattaag ccgatgaact gcccgggtca cgtacaaatt ttcaaccagg
     3481 ggctgaagtc ttatcgcgat ctgccgctgc gtatggccga gtttggtagc tgccaccgta
     3541 acgagccgtc aggttcgctg catggcctga tgcgcgtgcg tggatttacc caagatgacg
     3601 cgcatatctt ctgtactgaa gaacaaattc gcgatgaagt taacggatgt atccgtttag
     3661 tctatgatat gtacagcact tttggcttcg agaagatcgt cgtcaaactc tccactcgtc
     3721 ctgaaaaacg tattggcagc gacgaaatgt gggatcgtgc tgaggcggac ctggcggttg
     3781 cgctggaaga aaacaacatc ccgtttgaat atcaactggg tgaaggcgct ttctacggtc
     3841 cgaaaattga atttaccctg tatgactgcc tcgatcgtgc atggcagtgc ggtacagtac
     3901 agctggactt ctccttgccg tctcgtctga gcgcctccta tgtgggcgaa gacaacgagc
     3961 gtaaggtacc ggtaatgatt caccgcgcaa ttctggggtc gatggaacgt ttcatcggta
     4021 tcctgaccga agaattcgct ggtttcttcc cgacctggct tgcgccagtt caggttgtta
     4081 tcatgaatat taccgattca cagtctgaat acgttaacga attgacgcaa aaactatcaa
     4141 atgcgggcat tcgtgttaaa gcagacttga gaaatgagaa gattggcttt aaaatccgcg
     4201 agcacacttt gcgtcgcgtc ccatatatgc tggtctgtgg tgataaagag gtggaatcag
     4261 gcaaagttgc cgttcgcacc cgccgtggta aagacctggg aagcatggac gtaaatgaag
     4321 tgatcgagaa gttgcaacaa gagattcgca gccgcagtct taaacaattg gaggaataag
     4381 gtattaaagg cggaaaacga gttcaaacgg cgcgccctaa ccgtatcaat ggcgaaattc
     4441 gcgcccagga agttcgctta acaggtctgg aaggcgagca gcttggtatt gtgagtctga
     4501 gagaagctct ggagaaagca gaagaagccg gagtagactt agtcgagatc agccctaacg
     4561 ccgagccgcc ggtttgtcgt ataatggatt acggcaaatt cctctatgaa aagagcaagt
     4621 cttctaagga acagaagaaa aagcaaaaag ttatccaggt taaggaaatt aaattccgtc
     4681 ctggtacaga tgaaggcgac tatcaggtaa aactccgcag cctgattcgc tttctcgaag
     4741 agggtgataa agccaaaatc acgctgcgtt tccgcggtcg tgagatggcg caccagcaaa
     4801 tcggtatgga agtgcttaat cgcgtgaaag acgatttgca agaactggca gtggtcgaat
     4861 ccttcccaac gaagatcgaa ggccgccaga tgatcatggt gctcgctcct aagaagaaac
     4921 agtaaggcct tcaagtagca ctgtctgtgg agccttcggg cttcacaggc tttgttcgcc
     4981 tttgtttcgt ttattaacaa tgcgaagtgg aagttattaa aatgccaaaa attaagaccg
     5041 tacgcggtgc tgctaagcgc ttcaaaaaaa ccggtaaagg tggttttaag cacaagcacg
     5101 ctaacctgcg tcacattctg accaaaaaag cgaccaaacg taaacgtcac ctgcgtccga
     5161 aagccatggt ttccaaaggc gatctgggcc tggtaatcgc gtgcctgccg tacgcataag
     5221 ccgttaacgt ttttaacttt ttaattagaa tatagataca ggagagcaca tatggctcgc
     5281 gtaaaacgtg gtgttattgc acgcgcacgt cacaagaaaa ttttgaaaca agctaaaggc
     5341 tactacggtg cgcgttctcg cgtataccgc gttgccttcc aggctgttat caaagctggt
     5401 cagtatgctt accgtgaccg tcgtcaacgt aagcgtcagt tccgtcaact gtggattgca
     5461 cgtatcaacg cagcagcacg tcagaacggt atttcttaca gcaaattcat caatggcctg
     5521 aaaaaagcct ctgttgaaat cgaccgtaag atcctggctg atatcgcagt attcgacaaa
     5581 gtagcgttca ccgctctggt tgaaaaagcg aaagcagctc tggcataagc cagttgaaag
     5641 agggagctag tctccctctt ttcgtttcaa cgccatcaaa acattgactt ttatcgccgt
     5701 agccttttca ataaaggtct tttgaagagt accaaaaggt aacgcaagca atgaatgctg
     5761 ctattttccg cttctttttt tactttagca cctgaatcca ggaggctagc gcgtgagaag
     5821 agaaacggaa aacagcgcct gaaagcctcc cagtggaggc tttttttgta tgcgcgtttt
     5881 gaaaaataaa aagccagtct atcaggcgta attgtcgcag ccagtctgga tacggccagc
     5941 gcggagaaac cggagcgtat ttaagtacgt gagaatttcg agcactgccc gggaccaaaa
     6001 tggcaagtaa aatagcctga tgggataggc tctaagtcca acgaaccagt gtcaccactg
     6061 acacaatgag gaaaaccatg tcacatctcg cagaactggt tgccagtgcg aaggcggcca
     6121 ttagccaggc gtcagatgtt gccgcgttag ataatgtgcg cgtcgaatat ttgggtaaaa
     6181 aagggcactt aacccttcag atgacgaccc tgcgtgagct gccgccagaa gagcgtccgg
     6241 cagctggtgc ggttatcaac gaagcgaaag agcaggttca gcaggcgctg aatgcgcgta
     6301 aagcggaact ggaaagcgca gcgctgaatg cgcgtctggc ggcggaaacg attgatgtct
     6361 ccctgccagg tcgtcgcatt gaaaacggcg gtctgcatcc ggttacccgt accatcgacc
     6421 gtatcgaaag tttcttcggt gagcttggct ttaccgtggc aaccgggccg gaaatcgaag
     6481 acgattatca taacttcgat gctctgaaca ttcctggtca ccacccggcg cgcgctgacc
     6541 acgacacttt ctggtttgac actacccgcc tgctgcgtac ccagacctct ggcgtacaga
     6601 tccgcaccat gaaagcccag cagccaccga ttcgtatcat cgcgcctggc cgcgtttatc
     6661 gtaacgacta cgaccagact cacacgccga tgttccatca gatggaaggt ctgattgttg
     6721 ataccaacat cagctttacc aacctgaaag gcactctgca cgatttcctg cgtaacttct
     6781 ttgaggaaga tttgcagatt cgcttccgtc cttcctactt cccgttcacc gagccttctg
     6841 cagaagttga cgtcatgggt aaaaacggta aatggctgga agtgctgggt tgcgggatgg
     6901 tgcatccgaa cgtgctgcgt aacgttggca tcgacccgga agtttactct ggtttcgcct
     6961 tcgggatggg gatggagcgt ctgactatgt tgcgttacgg cgtcaccgac ctgcgtttat
     7021 tcttcgaaaa cgatctgcgt ttcctcaaac agtttaaata aggcaggaat agattatgaa
     7081 attcagtgaa ctgtggttac gcgaatgggt gaacccggcg attgatagcg atgcgctggc
     7141 gaatcaaatc actatggcgg gcctggaagt tgacggtgta gaaccggttg ccggtagctt
     7201 ccacggcgtg gtcgttggtg aagtggttga gtgtgcgcag catccgaacg ctgacaaact
     7261 gcgtgtgaca aaagtgaatg tcggcggcga tcgcctgctg gacatcgtct gtggtgcgcc
     7321 aaactgtcgt cagggcctgc gtgtggcggt agctaccatt ggtgctgttc tgccgggtga
     7381 tttcaaaatt aaagcggcga aactgcgtgg cgaaccgtct gaagggatgc tgtgctcctt
     7441 ctctgaactg ggaatttctg acgatcactg cggcattatc gaactgcctg cagatgcgcc
     7501 gattggcact gacatccgcg aatacctgaa actcgatgac aacaccatcg aaatcagcgt
     7561 aacgccaaac cgtgccgact gcttaggtat cattggtgtt gcgcgtgacg ttgccgtgct
     7621 gaatcagctg ccgctggttg aaccggaaat cgttccggtt ggtgcgacca tcgacgacac
     7681 gttgccgatt acagtcgaag cgcctgaagc ctgcccgcgc tatcttggcc gtgtggtaaa
     7741 aggcattaac gttaaagcgc caactccgct gtggatgaaa gaaaaactgc gtcgttgcgg
     7801 gatccgttct atcgatgcag ttgttgacgt caccaactat gtactgctcg aactgggcca
     7861 gccgatgcac gctttcgata aagatcgcat tgaaggcggc attgtggtgc ggatggcaaa
     7921 agagggcgaa acgctggtgc tgcttgatgg cactgaagcg aagctgaatg ctgacactct
     7981 ggtcatcgcc gaccacaaca aggcgctggc gatgggcggc atctttggtg gcgaacactc
     8041 tggcgtgaat gacgaaacgc aaaacgtctt gctggaatgc gctttcttca gcccgctgtc
     8101 tatcaccggt cgtgctcgtc gtcatggcct gcatactgat gcgtctcacc gttatgagcg
     8161 tggcgttgat ccggcactgc agcacaaagc gatggaacgt gcgacccgtc tgctgatcga
     8221 catctgcggt ggtgaggctg gtccggtaat tgatatcacc aacgaagcaa cgctgccgaa
     8281 gcgtgcaacc atcactttac gtcgtagcaa actggattgc ctgatcggcc atcatattgc
     8341 tgatgaacag gtaactgaca ttctgcgtcg tctcggctgc gaagtgaccg aaggcaaaga
     8401 cgagtggcag gcagttgcgc cgagctggcg tttcgatatg gagattgaag aagatctggt
     8461 cgaagaagtc gcgcgtgttt acggctacaa caacatcccg gatgagccgg tacaggcaag
     8521 cctgattatg ggtactcacc gtgaagctga cctgtcgctc aaacgcgtga aaacgctgct
     8581 caacgacaaa ggctatcagg aagtgatcac ctacagcttc gttgatccga aagtgcagca
     8641 gatgatccat ccaggcgttg aagccttact gctgccaagc ccgatctctg ttgaaatgtc
     8701 agcaatgcgt ctttctctgt ggaccggcct gctggcaacc gtggtgtaca accagaaccg
     8761 tcagcagaac cgtgtgcgca ttttcgaaag cggtctgcgt ttcgtaccag atactcaggc
     8821 accgttgggc attcgtcagg atctgatgtt agccggtgtg atttgcggta accgttacga
     8881 agagcactgg aacctggcaa aagagaccgt tgatttctat gatttgaaag gcgatcttga
     8941 atccgttctc gacctgaccg gtaaactgaa tgaggttgag ttccgtgcag aagcgaatcc
     9001 ggcactgcat ccggggcaat ccgcagcgat ttatctgaaa ggggaacgta ttggttttgt
     9061 tggagttgtt catcctgaac tggaacgtaa actggatctt aacggtcgca ctctggtgtt
     9121 cgaactggag tggaacaagc tcgcagaccg cgtggtgcct caggcgcgcg agatttctcg
     9181 cttcccggcg aaccgtcgtg acatcgcggt ggtggtcgca gaaaacgttc ccgcagcgga
     9241 tattttatcc gaatgtaaga aagttggcgt aaatcaggta gttggcgtaa acttatttga
     9301 cgtgtaccgc ggtaagggtg ttgcggaggg gtataagagc ctcgccataa gcctgatcct
     9361 gcaagatacc agccgtacac tcgaagaaga ggagattgcc gctaccgtcg ccaaatgtgt
     9421 agaggcatta aaagagcgat tccaggcatc attgagggat tgaacctatg gcgcttacaa
     9481 aagctgaaat gtcagaatat ctgtttgata agcttgggct tagcaagcgg gatgccaaag
     9541 aactggttga actgtttttc gaagagatcc gtcgcgctct ggaaaacggc gaacaggtga
     9601 aactctctgg ttttggtaac ttcgatctgc gtgataagaa tcaacgcccg ggacgtaacc
     9661 cgaaaacggg cgaggatatt cccattacag cacggcgcgt ggtgaccttc agacccgggc
     9721 agaagttaaa aagccgggtc gaaaacgctt cgcccaaaga cgagtaatct gatctaacta
     9781 aaaaggccgc tctgcggcct tttttctttc aataactaat tgatttataa tgttttatat
     9841 ctcttcgttc cacgatgcgt ccacatttag tggggggagg ggagtaagcc cgctacattg
     9901 tgggctttgt cttatagtct gatcactgtt tcaagtcggt gaggacacca aaaagaaacc
     9961 ccgcagtttt tacgctgcgg gtttgttgtt catgtctgtg agatagggtg ccttatcgac
    10021 cttaccctgg caaccgattg acgggggatt gctcccccgt cgcggtttcc ttactgctta
    10081 cactgtaaga acgccgcaaa ctccgctccc cagaagctca tccgtatttc gcacagcgaa
    10141 ccgtgcagca tccagatgat gaggattgcc gtcacgcaga acgtgatggc cgtaagcgat
    10201 ttttgcgaca tagcgcttgc tcctttttcg gggaggcgct aacctatcac ttgcttaggg
    10261 tagacggtta gggcctcggt taaacaaaaa tgttttccgg ggcctttcca catctggcct
    10321 tcaggtattc cctccgacca tcagccgaaa ggcacccgcg cgtaatctat cgcttttttg
    10381 ttactccggc aattctgctc gttaattctg aggtaagggc aaactcatct gattgtttcc
    10441 tctgtgtgaa gttggcagtt catgcca
//
LOCUS       DADMHM010000136        10430 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.138, whole genome shotgun sequence.
ACCESSION   DADMHM010000136 DADMHM010000000
VERSION     DADMHM010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10430)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10430)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10430
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.138"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            142..2010
                     /gene="kup"
                     /locus_tag="JN125_002978"
     CDS             142..2010
                     /gene="kup"
                     /locus_tag="JN125_002978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000102304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low affinity potassium transporter Kup"
                     /protein_id="HAY8872681.1"
                     /translation="MSTDNKQSLPAITLAAIGVVYGDIGTSPLYTLRECLSGQFGFGV
                     ERDAVFGFLSLIFWLLIFVVSIKYLTFVMRADNAGEGGILTLMSLAGRNTSARTTSML
                     VIMGLIGGSFFYGEVVITPAISVMSAIEGLEIVAPQLDTWIVPLSIIVLTLLFMIQKH
                     GTAMVGKLFAPIMLTWFLILAGLGLRSIIANPEVLHALNPMWAVHFFLEYKTVSFIAL
                     GAVVLSITGVEALYADMGHFGKFPIRLAWFTVVLPSLTLNYFGQGALLLKNPEAIKNP
                     FFLLAPDWALIPLLIIAALATVIASQAVISGVFSLTRQAVRLGYLSPMRIIHTSEMES
                     GQIYIPFVNWMLYVAVVIVIVSFEHSSNLAAAYGIAVTGTMVLTSILSTTVARQNWHW
                     NKYFVALILIAFLCVDIPLFTANLDKLLSGGWLPLSLGTVMFIVMTTWKSERFRLLRR
                     MHEHGNSLEAMIASLEKSPPVRVPGTAVYMSRAINVIPFALMHNLKHNKVLHERVILL
                     TLRTEDAPYVHNVRRVQIEQLSLTFWRVVASYGWRETPNVEEVFHRCGLEGLSCRMME
                     TSFFMSHESLILGKRPWYLRLRGKLYLLLQRNALRAPDQFEIPPNRVIELGTQVEI"
     gene            2177..2596
                     /gene="rbsD"
                     /locus_tag="JN125_002979"
     CDS             2177..2596
                     /gene="rbsD"
                     /locus_tag="JN125_002979"
                     /EC_number="5.4.99.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709562.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-ribose pyranase"
                     /protein_id="HAY8872682.1"
                     /translation="MKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMAL
                     TQGVPSFMQVLGVVTNEMQVEAAIIAEEIKQHNPQLHETLLTHLEQLQKHQGNTIEIR
                     YTTHEQFKQQTAESQAVIRSGECSPYANIILCAGVTF"
     gene            2604..4073
                     /gene="rbsA"
                     /locus_tag="JN125_002980"
                     /pseudo
     CDS             2604..4073
                     /gene="rbsA"
                     /locus_tag="JN125_002980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418205.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter ATP-binding protein RbsA"
     gene            4078..5032
                     /gene="rbsC"
                     /locus_tag="JN125_002981"
                     /pseudo
     CDS             4078..5032
                     /gene="rbsC"
                     /locus_tag="JN125_002981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002882531.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter permease"
     gene            5057..5943
                     /gene="rbsB"
                     /locus_tag="JN125_002982"
                     /pseudo
     CDS             5057..5943
                     /gene="rbsB"
                     /locus_tag="JN125_002982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312720.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ribose ABC transporter substrate-binding protein
                     RbsB"
     gene            6069..6998
                     /gene="rbsK"
                     /locus_tag="JN125_002983"
     CDS             6069..6998
                     /gene="rbsK"
                     /locus_tag="JN125_002983"
                     /EC_number="2.7.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribokinase"
                     /protein_id="HAY8872683.1"
                     /translation="MQNAGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVAFGGKG
                     ANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFV
                     NGEGENVIGIHAGANAALSPALVEAQRERIANASALLMQLESPLESVMAAAKIAHQNK
                     TIVALNPAPARELPDELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIR
                     TVLITLGSRGVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGALITALLEEKPLPEAIR
                     FAHAAAAIAVTRKGAQPSVPWREEIDVFLDRQR"
     gene            7002..7994
                     /gene="rbsR"
                     /locus_tag="JN125_002984"
     CDS             7002..7994
                     /gene="rbsR"
                     /locus_tag="JN125_002984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose operon transcriptional repressor RbsR"
                     /protein_id="HAY8872684.1"
                     /translation="MATMKDVSRLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELN
                     YAPSALARSLKLNQTHTIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQ
                     RMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
                     SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTG
                     DFEFNGGFDAMRQLLSHPLRPQAVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDI
                     ELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQLTPILMERGSA"
     gene            complement(7960..9387)
                     /locus_tag="JN125_002985"
     CDS             complement(7960..9387)
                     /locus_tag="JN125_002985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HAY8872685.1"
                     /translation="MSDKKKRSMAGLPWIAAMAFFMQALDATILNTALPAIAHSLNRS
                     PLAMQSAIISYTLTVAMFIPVSGWLADRFGTRRIFTLAVSLFTLGSLACALSNSLPQL
                     VVFRVIQGIGGAMMMPVARLALLRAYPRNELLPVLNFVAMPGLVGPILGPVLGGVLVT
                     WATWHWIFLINIPIGIAGLLYARKHMPNFTTARRRFDITGFLLFGLSLVLFSSGIELF
                     GEKIVASWIALTVIVTSIGLLLLYILHARHTPNPLISLDLFKTRTFSIGIVGNIATRL
                     GTGSVPFLMPLMLQVGFGYQAFIAGCMMAPTALGSIIAKSMVTQVLRRLGYRHTLVGI
                     TVIIGLMIAQFSLQSPAMAIWMLILPLFILGMAMSTQFTAMNTITLADLTDDNASSGN
                     SVLAVTQQLSISLGVAVSAAVLRVYKGMEGTTTVEQFHYTFITMGIITVASAAMFMLL
                     KTTDGNNLIKRQRKSKPNRVPSESE"
     gene            complement(9410..10102)
                     /locus_tag="JN125_002986"
     CDS             complement(9410..10102)
                     /locus_tag="JN125_002986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312724.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FadR family transcriptional regulator"
                     /protein_id="HAY8872686.1"
                     /translation="MPLSAQQLAAQKNLSYVLAEKLAQRILKGEYEPGTILPSEIELG
                     EQFGVSRTAVREAVKTLTAKGMVLPRPRIGTRVMPQSNWNFLDQELLTWWMTEENFHQ
                     VIDHFLVMRICLEPQACLLAATVGTAEQKAHLNTLMAEMAALKKNFRRERWIEVDMAW
                     HEHIYEMSANPFLTSFASLFHSVYHTYFTSITSDTVIKLDLHQAIVDAIIQSDGDAAF
                     KACQALLRSPDK"
BASE COUNT         2557 a         2505 c         2751 g         2617 t
ORIGIN      
        1 aagggggggt atttttcttt gagccaggtt aatgtggccg catttaggag tacgattttg
       61 ccgttaatcg tgcatactgt gcgctttttt gtgggccaag ggactaagca cacatttcat
      121 atttcaacga aagactagtc tatgagcact gataataagc aatcattgcc cgcgattacc
      181 ctcgcggcga ttggagttgt ctacggcgat attggtacca gcccgttata tacacttcgt
      241 gaatgtttgt ccggccagtt tggttttggc gttgaacgcg atgccgtgtt tggcttttta
      301 tcgctgatct tctggctgct aatctttgtg gtttccatta aatatctcac cttcgtgatg
      361 cgggcagata acgccggtga gggggggatc ctgacgttga tgtcgcttgc cgggcgtaat
      421 acgtcggcac gaaccacatc aatgctggtg attatggggc taatcggcgg cagctttttc
      481 tatggtgaag tcgtcataac acccgctatt tcggtgatgt cagccattga aggtctggaa
      541 atcgtcgccc cgcagctgga tacctggata gttcccctct caattatcgt tctcacttta
      601 ttatttatga ttcaaaaaca tggcacggct atggtcggta agctgtttgc gccgatcatg
      661 ctgacctggt ttttgattct ggcaggactg gggttacgta gcattattgc taacccggaa
      721 gtgctgcatg cgctgaatcc aatgtgggcg gtgcatttct tccttgaata caaaacggtt
      781 tcttttattg cattaggggc agtggtgttg tcgattacgg gggtcgaggc gctgtatgct
      841 gatatggggc actttggtaa gttccctatt cgcctggcgt ggttcaccgt cgtattacct
      901 tccttgaccc ttaattactt cggtcagggg gcgctgttgt taaagaaccc ggaagcgatt
      961 aagaacccgt tcttcctgtt ggcaccggac tgggcgctga tcccgctgct gatcatcgcc
     1021 gcactggcga cggtaattgc ctcgcaggcg gttatctctg gcgtcttctc attgacgcgt
     1081 caggcggtac gtctgggata tttgtcgccg atgcgcatta ttcacacctc cgaaatggag
     1141 tcagggcaaa tctatattcc gtttgtgaac tggatgctct atgtcgcggt cgtgattgtg
     1201 attgtcagct ttgagcactc cagcaacctg gcggcggcgt acgggattgc ggtgaccgga
     1261 accatggtgc tgacgtctat tctctcgact accgtggcac gtcagaactg gcactggaat
     1321 aagtattttg ttgcgctgat cctgattgct ttcctttgtg tcgatattcc attgttcacc
     1381 gctaacctcg ataaactgct ctccggcggt tggttgccat tgagcctcgg tacggtgatg
     1441 tttatcgtga tgaccacctg gaagagcgag cgtttccgct tgctgcggcg gatgcatgaa
     1501 catggtaact ctctggaagc gatgattgct tcgctggaga aatcaccgcc tgttcgcgtg
     1561 cccgggaccg cggtgtatat gtcgcgtgca atcaacgtca ttccctttgc gctgatgcat
     1621 aaccttaaac ataacaaggt attgcatgag cgggtgattt tgttaactct gcgtaccgaa
     1681 gacgcgccat atgtccataa tgtccgtcgg gtacagattg aacaactgtc gctcactttc
     1741 tggcgcgtgg tggcaagtta tggttggcga gaaacgccaa acgtggaaga agttttccac
     1801 cgctgcggtc tggaaggatt aagttgccgg atgatggaaa cctccttctt tatgtcgcat
     1861 gagtcgttga tcctcggcaa acgcccgtgg tatttgcgtc tgcgcggcaa gctgtacttg
     1921 ctgctgcaac gtaatgcgct gcgtgcacca gatcaatttg aaatcccgcc aaacagggtt
     1981 atcgaactgg gtactcaggt cgaaatctaa cgccagacgc ctcctttctc cataaggggg
     2041 cgtttttgtt ttcatggtta atcaccatgt aaaacgtttc gaggttgatc acatttccgt
     2101 aacgtcacga tggttttccc aactcagtca ggattaaact gcgggtcagc gaaacgtttc
     2161 gctgatggag aaaaaaatga aaaaaggcac cgttcttaat tctgatattt catcggtgat
     2221 ctcccgtctg ggacataccg atacgctggt ggtgtgtgat gctggtttac ccatccccaa
     2281 aagtacaacg cgtatcgata tggcattaac ccagggtgta ccttctttta tgcaggtgct
     2341 gggcgtcgtt acaaatgaaa tgcaggtcga ggctgccatt atcgcggaag agatcaaaca
     2401 acataatccg caactccacg aaacgttgct cactcacctt gagcagctgc aaaaacacca
     2461 gggaaatacc attgaaattc gttacaccac gcatgaacaa ttcaaacaac aaaccgcaga
     2521 aagtcaggcg gtaattcgca gcggagaatg ttctccgtat gcgaatatca ttctctgtgc
     2581 tggcgtgacg ttctgaggcc gtcatggaag cattacttca gcttaaaggc atcgataaag
     2641 ccttcccggg cgtaaaagcc ctctcgggcg ctgcgttaaa tgtctatccg ggccgcgtga
     2701 tggcgctggt gggcgaaaac ggcgcgggta aatccaccat gatgaaagtg cttactggta
     2761 tctatgctcg cgatgccggc acgcttttat ggctggggaa agaaacgaca tttaccgggc
     2821 cgaaatcttc ccaggaagcc gggattggga ttatccatca ggaactgaac ctgatcccgc
     2881 agttgaccat tgccgaaaac attttcctcg gtcgtgagtt tgttaatcgc tttggcaaaa
     2941 ttgactggaa aaccatgtat gccgaagcgg ataaattgct ggctaaactt aacctgcgct
     3001 ttaaaagcga caagctggtg ggcgatcttt ccatcggtga ccagcaaatg gttgaaattg
     3061 ccaaagtgct gagctttgag tcgaaagtca tcattatgga tgaaccgacc gatgcgctga
     3121 ccgataccga aacagaatcc ctgttccgcg tcatccgcga actaaaatcg caaggccgcg
     3181 gtattgtcta tatctcccac cgcatgaaag aaatcttcga gatttgcgat gccgttaccg
     3241 tttttcgtga cgggcaattt attgctgagc gcgaagtggc atcactgacc gaagattcgc
     3301 tgattgagat gatggtgggt cgcaagctgg aagatcaata tccacacctg gacaaagcgc
     3361 cgggagatat ccgcctgaaa gtcgataatc tctgcggacc tggcgttaac gatgtctctt
     3421 ttactttacg caaaggcgaa attcttggcg tctctggttt gatgggcgca ggtcgtaccg
     3481 aactgatgaa agtgctctac ggcgcactac cgcgcaccag cggttacgtc accctggatg
     3541 ggcatgaagt cgttacccgt tcaccgcagg atggcctggc aaacggcatt gtgtatatct
     3601 ccgaagaccg taaacgtgac ggtttagtgt tgggcatgtc agtaaaagag aacatgtcgc
     3661 tgacagcgct gcgctacttc agccgcgctg gcggcagttt gaagcatgcc gatgaacagt
     3721 aggctgtgag tgatttcatt cgtctgttta atgtgaaaac accgtcgatg gaacaggcaa
     3781 ttggtctgct ttccggtggc aatcagcaaa aagtgttgat ccttgatgaa cctacccgtg
     3841 gcgtagatgt cggcgcgaaa aaagagatct atcaactgat taaccagttc aaagccgatg
     3901 gcttgagcat cattctggta tcatcggaga tgccagaagt attaggcatg agcgatcgca
     3961 tcatcgtcat gcatgaaggg catctcagcg gggaatttac tcgtgagcag gccacccagg
     4021 aagtgttaat ggctgccgct gtgggcaagc ttaatcgcgt gaatcaggag taaaaaaatg
     4081 acaacccaga ctgtctctgg tcgccgttat ttcacgaaag cgtggctgat ggagcagaaa
     4141 tcgcttatcg ctctgctggt gctgatcgcg attgtctcga cgttaagccc gaactttttc
     4201 accatcaata acttattcaa tattctccag caaacctcgg tgaacgccat tatggcggtc
     4261 gggatgacgc tggtgatcct gacgtcgggc atcgacttgt ctgtaggttc tctgttggcg
     4321 ctaaccggcg cagttgctgc atctatcgtc ggcattgaag tcaatgcgct ggtggctgtc
     4381 gctgctgctc tcgcgttagg tgccgcaatt ggtgcggtaa ccggggtgat tgtagcgaaa
     4441 ggtcgcgttc aggcgtttat cgctacgctg gttatgatgc ttttactgcg cggcgtgacc
     4501 atggtttata ccaacggtag cccagtgaat accggcttta ctgagaacgc cgatctgttt
     4561 ggctggtttg gtattggtcg tccgctgggc gtaccgacgc cagtctggat catggggatt
     4621 gtcttcctcg cggcctggta catgctgcat cacacgcgtc tggggcgtta catctacgcg
     4681 ctgggcggca acgcgtcttt ctggtatcaa cgtcaataaa atcaaaatca tcgtctattc
     4741 tctttgtggt ctgctggcat cgctggccgg gaccattgaa gtggcgcgtc tctcctccgc
     4801 acaacccacg gcggggactg gctatgagct ggatgctatt gctgcggtgg ttctgggcgg
     4861 tacgagtctg gcgggcggaa aaggtcgcat tgttgggacg ttgatcggcg cattaattct
     4921 tggcttcctt aataatggat tgaatttgtt aggtgtttcc tcctattacc agatgatcgt
     4981 caaagcggtg gtgattttgc tggcggtgct ggtagacaac aaaaagcagt aataacgact
     5041 acaggacatc ttgaatatga acatgaaaaa actggctacc ctggtttccg ctgttgcgct
     5101 aagcgccacc gtcagtgcga atgcgatggc aaaagacacc atcgcgctgg tggtctccac
     5161 gcttaacaac ccgttctttg tatcgctgaa agatggcgcg cagaaagagg cggataagct
     5221 tggctataac ctggtggtgc tggactccca gaacaacccg gcgaaagagc tggcgaacgt
     5281 gcaggactta accgttcgcg gcaccaaaat tctgctgatt aacccgaccg actccgacgc
     5341 agtaggtaat gctgtgaaga tggctaacca ggcgaacatc ccggttatca ctcttgaccg
     5401 ccaggcaacg aaaggtgaag tggtgagcca cattgcttct gataacgtac tgggtggcaa
     5461 aatcgccggt gattacatcg cgaagaaagc gggtgaaggt gccaaagtta tcgagctgca
     5521 aggcattgct ggttcatccg cagcccgtga acgtggcgaa ggcttccagc aggccgttgc
     5581 tgctcacaag tttaatgttc ttgccagcca gcagattttg atcgcactaa aggtttgaac
     5641 gtagtgcaga acctgttgac cgctcatccg gatgttcagg ctgtattcgc gcagaatgat
     5701 gaaatggcgc tgggcgcgct gcgcgcactg caaactgccg gtaaatcgga tgtgatggtc
     5761 gtcggatttg acggtacacc ggatggcgaa aaagcggtga atgatggcaa actagcagcg
     5821 actatcgctc agctacccga tcagattggc gcgaaaggcg tcgaaaccgc agataaagtg
     5881 ctgaaaggcg agaaagttca ggctaagtat ccggttgatc tgaaactggt tgttaagcag
     5941 tagttttaat caggttgtat gacctgatgg tgacataaat acgtcatcga cagatgaacg
     6001 tgtaatataa agaaaagcag ggcacgcgcc accctaacac ggtggcgcat tttatggaca
     6061 tcccgaatat gcaaaacgca ggcagcctcg ttgttcttgg cagcattaat gctgaccaca
     6121 ttcttaatct tcaatctttt cctactccag gcgaaaccgt aaccggtaac cactatcagg
     6181 ttgcatttgg cggcaaaggc gcgaatcagg ctgtggctgc tgggcgtagc ggtgcgaata
     6241 tcgcgtttat tgcctgtacg ggtgatgaca gcattggtga gagcgttcgc cagcagctcg
     6301 ccactgataa cattgatatt actccggtca gcgtgatcaa aggtgaatca acaggtgtgg
     6361 cgctgatttt tgttaatggc gaaggtgaga atgtcatcgg tattcatgcc ggcgctaatg
     6421 ctgccctttc cccggcgctg gtggaagcgc aacgtgagcg tattgccaac gcgtcagcat
     6481 tattaatgca gctggaatca ccactcgaaa gtgtgatggc agcggcgaaa atcgcccatc
     6541 aaaataagac tatcgttgcg cttaacccgg ctccggctcg cgaacttcct gacgaactgc
     6601 tggcgctggt ggacattatt acgccaaacg aaacggaagc agaaaagctc accggtattc
     6661 gtgttgaaaa tgatgaagat gcagcgaagg cggcgcaggt actgcatgaa aaaggtatcc
     6721 gtactgtact gattacttta ggaagtcgtg gtgtatgggc tagcgtgaat ggtgaaggtc
     6781 agcgcgttcc tggattccgg gtgcaggctg tcgataccat tgctgccgga gataccttta
     6841 acggcgcgtt aatcacggcg ttgctggaag aaaaaccatt gccagaggcg attcggtttg
     6901 cccatgctgc agctgcgatt gccgtaacac gtaaaggcgc acaaccttcc gtaccgtggc
     6961 gtgaagagat cgacgtattt ttagacaggc agaggtgacg cttggctaca atgaaagatg
     7021 tttcccgcct ggcgggcgtt tctacctcaa cagtttctca cgttatcaat aaagatcgct
     7081 tcgtcagtga agcgattacc gccaaagttg aagcggcgat taaagaactc aattacgcgc
     7141 catcagccct ggcgcgtagc ctcaaactca atcaaacaca taccattggc atgttgatca
     7201 ctgccagtac caatcctttc tattcagaac tggtgcgtgg cgttgaacgc agctgcttcg
     7261 aacgcggtta tagtctcgtc ctttgcaata ccgaaggcga tgaacagcgg atgaatcgca
     7321 atctggaaac gctgatgcaa aaacgcgttg atggcttgct gttactgtgc accgaaacgc
     7381 atcaaccttc gcgtgaaatc atgcaacgtt atccgacagt gcctactgtg atgatggact
     7441 gggctccgtt cgatggcgac agcgatctta ttcaggataa ctcgttgctg ggcggagact
     7501 tagcaacgca atatctgatc gataaaggtc atacccgtat cgcctgtatt accggtccgc
     7561 tggataaaac tccggcgcgc ctgcggttgg aaggttatcg ggcggcgatg aaacgtgcgg
     7621 gtctcaacat tcctgatggc tatgaagtca ctggtgattt tgaatttaac ggcgggtttg
     7681 acgccatgcg ccaactgtta tcacatccgc tgcgtcctca ggccgtcttt accggaaatg
     7741 acgctatggc tgttggcgtt taccaggcgt tatatcaggc agagttacag gttccgcagg
     7801 atatcgcggt gattggctat gacgatatcg aactggcaag ctttatgacg ccaccattaa
     7861 ccactatcca ccaaccgaaa gatgaactgg gggagctggc gattgatgta ctcatccatc
     7921 ggataaccca gccgaccctt cagcaacaac gattacaact tactccgatt ctgatggaac
     7981 gcggttcggc ttagatttac gctgtctttt gatcaaatta ttaccatcgg ttgttttcag
     8041 aagcatgaac attgctgctg aagcaacagt aataatgccc atcgtgataa acgtatagtg
     8101 gaattgttcg acagtcgttg tgccttccat ccctttataa acgcgaagga cggccgcact
     8161 tacagcaacg cctaaactaa tcgacagttg ctgcgtgacc gccagaacac tgttaccgct
     8221 gctggcgttg tcatcggtca gatcggcaag tgtgatggta ttcatcgcgg taaattgcgt
     8281 cgacatagcc atccctaata taaacaacgg caagatcagc atccatatcg ccattgccgg
     8341 tgattgcaaa gagaactgag cgatcattag cccaataatc accgtgatcc ccactaacgt
     8401 atggcgatag cccagacgac gtaagacttg ggtaaccatc gattttgcaa taatggaacc
     8461 taacgctgtc ggtgccatca tacagccggc aataaacgcc tgataaccaa atcctacctg
     8521 taacatcaat ggcataagga acggtacact accggtcccc agacgggttg caatattgcc
     8581 tacgataccg atcgagaaag tgcgggtttt aaataaatct aatgaaatta atgggtttgg
     8641 cgtgtgtcgc gcatggagaa tatagagaag cagtaacccg atgctggtga caattaccgt
     8701 caaggcaatc cagctggcga caatcttttc cccgaatagc tctattccgc ttgagaagag
     8761 aacaaggctg aggccaaaca gcaaaaagcc agtgatatcg aatctgcgtc gtgcggtggt
     8821 gaaattgggc atatgtttgc gcgcgtaaag aaggcccgca atacctatgg ggatattgat
     8881 taaaaatatc cagtgccagg ttgcccaggt gaccagcacg ccgccaagaa cggggcctaa
     8941 aattggcccc accagacccg gcatggcgac aaaattcaat acaggaagaa gttcattacg
     9001 aggataagca cgcagtaagg ccagccgagc aacaggcatc atcattgcgc cgcctatccc
     9061 ctgaataacc cggaagacaa ccagctgtgg tagcgaatta gaaagtgcgc aggccagaga
     9121 acccaacgtg aacagactca cggcaagggt aaaaatgcga cgcgtaccga agcgatcggc
     9181 tagccatccg cttaccggaa taaacatcgc caccgtcagc gtataactga tgatggctga
     9241 ttgcattgcg agaggagaac gattaaggct atgagcgatt gcgggtaagg cggtattcag
     9301 aatagtggca tcaagtgcct gcatgaagaa ggccatcgcc gcgatccacg gcaaacccgc
     9361 catactacgc ttctttttat cgctcattca atgtcctgtt atcgggttat cacttatcag
     9421 gtgagcgtag cagcgcctga caagctttaa atgccgcgtc gccatcgctt tggataatcg
     9481 catcgacaat cgcctggtgc agatccagct ttatcactgt gtcgctggta attgacgtga
     9541 agtaagtgtg ataaaccgaa tggaatagcg aggcgaatga ggtcaaaaac ggattggcgc
     9601 tcatttcata gatatgctca tgccaggcca tatcgacttc gatccagcgt tcacggcgaa
     9661 agttcttttt taatgccgcc atttcggcca ttaacgtatt gagatgcgcc ttctgttccg
     9721 cggtgccaac cgttgctgcc agtaggcagg cttgcggctc cagacagata cgcataacca
     9781 gaaagtgatc gatgacctga tgaaagttct cttctgtcat ccaccaggta agcaattcct
     9841 gatcaagaaa attccagttt gattgtggca tgacccgggt accaattcgc ggtcgcggta
     9901 aaaccatccc ttttgccgtt aacgttttga ccgcttcgcg taccgctgta cgactcactc
     9961 caaattgctc gcccagctca atctcactag gcaaaatggt gccgggttca tattcacctt
    10021 ttaagatgcg ttgcgccagc ttctcagcca gaacatacga aaggtttttc tgtgcagcta
    10081 actgttgtgc gcttaaaggc attactaatc ttcctttttc tttttattcc tccttagtat
    10141 gccaccagga agtgtgatta cggttgcaaa aacggcaaat tgcttgtttt atggcacatt
    10201 aacggggctt ttgctgaaaa agtgcgcggt cagaaaatta ttttaaattt cctcttgtca
    10261 ggccggaata actccctata atgcgccacc actgacacgg aacaacggca aacacgacgc
    10321 cgggtcagcg gggttctcct gagaatctca acagagaaaa gcaaaaaaat gcttgacttt
    10381 gtagcggaaa agtgtattat gcacaccccg cgccgctgag aaaaaacgaa
//
LOCUS       DADMHM010000137        10416 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.139, whole genome shotgun sequence.
ACCESSION   DADMHM010000137 DADMHM010000000
VERSION     DADMHM010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10416)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10416)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10416
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.139"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            6..901
                     /locus_tag="JN125_002987"
                     /pseudo
     CDS             6..901
                     /locus_tag="JN125_002987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001300650.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
     gene            complement(997..2040)
                     /locus_tag="JN125_002988"
     CDS             complement(997..2040)
                     /locus_tag="JN125_002988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1176 domain-containing protein"
                     /protein_id="HAY8872687.1"
                     /translation="MRYRIFLLFFFALLPTSLVWAAPAQRAFSDWLVTCNNQNFCVAR
                     NTGDHNGLVMTLSRSAGAHTDAVLRIECGGLKSPEASEGEIAPRLLLDGEPLALSGDK
                     WRISPWLLVTDDTATITAFLQMIQEGKAITLRDGNQTISLSGLKAALLFIDAQQKRVG
                     SETAWIKKGDEPPLSVPPAPALKEVAVVNPTPTPLSLEERNDLLDYGNWRMNGLRCSL
                     DPLRREVNVTALTDDKALMMISCEAGAYNTIDLAWIVSRKNPLASRPVRLRLPFNNGQ
                     ETNELELMNATFDEKSRELVTLAKGRGLSDCGIQARWRFDGQRFRLVRYAAEPTCDNW
                     HGPDAWPTLWITR"
     gene            complement(2166..2741)
                     /gene="nudK"
                     /locus_tag="JN125_002989"
     CDS             complement(2166..2741)
                     /gene="nudK"
                     /locus_tag="JN125_002989"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose pyrophosphatase NudK"
                     /protein_id="HAY8872688.1"
                     /translation="MTQQITLIKDKILSDNYFTLHNITYDLTRKDGEVIRHKREVYDR
                     GNGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDNDEPEVCIRKEAI
                     EETGYEVGEVRKLFELYMSPGGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPF
                     SQALEMIKTGEIRDGKTVLLLNYLQTSHLMD"
     gene            complement(2809..4788)
                     /gene="aegA"
                     /locus_tag="JN125_002990"
                     /pseudo
     CDS             complement(2809..4788)
                     /gene="aegA"
                     /locus_tag="JN125_002990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416963.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="formate-dependent uric acid utilization protein
                     AegA"
     gene            4994..6694
                     /gene="narQ"
                     /locus_tag="JN125_002991"
     CDS             4994..6694
                     /gene="narQ"
                     /locus_tag="JN125_002991"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate/nitrite two-component system sensor
                     histidine kinase NarQ"
                     /protein_id="HAY8872689.1"
                     /translation="MIVKRPVSASLARAFFYIVLLSILSTGIALLTLASSLRDAEAIN
                     IAGSLRMQSYRLGYDLQSGSPQLNAHRQLFQQALHSPVLTNLNVWYVPEAVKTRYAHL
                     NANWLEMNNRLSKGDLPWYQANINNYVNQIDLFVLALQHYAERKMLLVVAISLAGGIG
                     IFTLVFFTLRRIRHQVVAPLNQLVTASQRIEHGQFDSPPLDTSLPNELGLLAKTFNQM
                     SSELHKLYLSLEASVEEKTRDLHEAKRRLEVLYQCSQALNTSQIDVHCFRHILQIVRD
                     NEAAEYLELNVGENWRISEGQPNPELPMQILPVTMQETVYGELHWQNSHVSSSEPLLN
                     SVSSMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRSIP
                     EDNATAQSIMADFSLALNDAYRQLRELLTTFRLTLQQADLPSALREMLDTLQNQTSAK
                     LTLDCRLPTLALDAQMQVHLLQIIREAVLNAMKHANASEIAVSCVTAPDGNHTVYIRD
                     NGIGIGEPKEPEGHYGLNIMRERAERLGGTLTFSQPSGGGTLVSISFRSAEGEESQLM
                     "
     gene            6858..9970
                     /gene="acrD"
                     /locus_tag="JN125_002992"
                     /pseudo
     CDS             6858..9970
                     /gene="acrD"
                     /locus_tag="JN125_002992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416965.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease AcrD"
     gene            complement(10069..10128)
                     /gene="ypfM"
                     /locus_tag="JN125_002993"
     CDS             complement(10069..10128)
                     /gene="ypfM"
                     /locus_tag="JN125_002993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YpfM"
                     /protein_id="HAY8872690.1"
                     /translation="MIERELGNWKDFIEVMLRK"
BASE COUNT         2389 a         2737 c         2748 g         2542 t
ORIGIN      
        1 ggccgatgct gcctgagttg ctcggcggtt cggcggatct ggctccagca acctgaccat
       61 ctggaaaggt tctgtttcgc tgaaggaaga tccggcgggc aactacattc actacggggt
      121 gcgtgaattt ggcatgaccg ctatagccaa cggcatcgcg caccacggcg gctttgtgcc
      181 gtataccgcg acgttcctga tgtttgttga atacgcccgt aacgccgcgc ggatggcggc
      241 actgatgaaa gcgcggcaga ttatggttta tacccacgac tcaattggcc tgggcgaaga
      301 tggtccgacg caccaggctg ttgagcaact ggccagcctg cgcttaacgc caaatttcag
      361 cacctggcga ccgtgcgatc aggtggaagc ggcggtgggc tggaagctgg cggttgagcg
      421 ccacaacgga ccgacggcac tgatcctctc aaggcagaat ctggcccagg tggaacgtac
      481 gccggatcag gtaaaagaga ttgcccgtgg cggttatgtg ctgaaagaca gcggcggtaa
      541 gccagatatt attttgattg ccaccggttc agagatggaa atccccctgc aagcggcaga
      601 gaaattagcg ggagaaggtc gcaatgtacg cgtagtttcc ctgccctcga ctgatatttt
      661 cgacgcccag gatgaggaat atcgggagtc ggtgttgcct tctaacgttg cggctcgcgt
      721 ggcggtggaa gcaggtattg ccgattactg gtacaagtat gttggtttga aaggggcgat
      781 tgttgggatg acaggttatg gggaatctgc tccggcggat aagctgttcc cgttctttgg
      841 ctttaccgcc gagaatattg tggcaaaagc gcataaggtg ctgggagtga aaggtgcctg
      901 atggtgatcg ccggatgctg attgccggat gcgactctga cgcgtcttat ccggcctata
      961 gcgtcttatc cggcctacat gtccccgcca ttttgtttaa cgggtgatcc acaacgtggg
     1021 ccaggcgtct ggcccatgcc agttatcgca ggtgggttct gcggcgtaac gcaccaggcg
     1081 aaaacgctga ccgtcaaagc gccagcgcgc ctgaatgcca caatcgctta atccgcgccc
     1141 tttcgctaag gtcaccagtt cacgcgattt ctcatcaaat gttgcgttca tcagttccag
     1201 ttcattcgtc tcctgcccgt tgttgaacgg caaacgcaac cgaaccgggc gcgaggccag
     1261 cggattttta cgcgacacaa tccatgccaa atcaatggtg ttataggccc ctgcctcaca
     1321 gctaatcatc atcagcgctt tatcatcagt cagcgcagtg acattcacct cacgacgcaa
     1381 tggatcaagc gagcagcgca gaccattcat ccgccagttt ccataatcca gcaaatcgtt
     1441 gcgttcttcg agtgagagtg gcgtcggcgt tgggttaacc accgcgacct ctttcagcgc
     1501 aggcgcgggc ggtacgctga gcggcggttc gtcccctttc ttgatccacg cggtttcact
     1561 gccaacgcgc ttttgctgag catcaataaa caacaacgcc gcttttaagc cactcagcga
     1621 aatggtctga ttgccgtcgc gtaaggtgat cgccttccct tcctgaatca tctgcaaaaa
     1681 cgcggtgatg gttgccgtat catcggttac taataaccat ggtgaaatcc gccacttgtc
     1741 accacttaac gccaacggct cgccatctaa cagcagccgt ggcgctatct ccccttctga
     1801 cgcctccggc gacttcaatc cgccgcactc aatacgtaaa acggcatcgg tatgcgcccc
     1861 ggcgctgcgg ctcagggtca tcaccagtcc attatgatcg cccgtattac gcgccacgca
     1921 gaagttttgg ttattacagg tgaccagcca gtcggaaaac gcccgttgcg ctggtgccgc
     1981 ccacaccaaa gacgtcggca acaaagcgaa aaaaaagaga aggaaaatgc gatagcgcat
     2041 ggacggtacg accccagaag ttcaaacaaa cagcacaagt cgtatcttcg ttgcgcaggt
     2101 agcgcggctc aatcggattt gtcggattga gccaataata aacaacgaaa tattattgtt
     2161 atttttcagt ccattaaatg tgacgtttgc aaatagttaa gcaataacac cgtcttaccg
     2221 tcacgtatct cgccggtttt gatcatctcc agcgcctggc tgaatggcag ctcgagcact
     2281 tcaatatctt catcttcgac accgccaccg gcgttagcgc gctgattgtc actgtattcg
     2341 gcgataaaaa agtggattag ctcagtcaca ccgcctggcg acatatacag ttcaaataat
     2401 ttgcgcactt cgcccacttc atagcccgtc tcttcaatcg cttctttacg aatgcacact
     2461 tccggttcgt cgttatccag cagcccggcg caggtttcaa tcagctgccc gctttcattg
     2521 ccattaaccc aggtagcgac acggaactga cgaatcagaa ccacggtctt tttcttcgcg
     2581 ttgtacagga ggatcgtcgc accattaccg cgatcgtaaa cttcacgttt atggcggata
     2641 acttcgccat ctttgcgcgt gagatcgtag gtaatgttgt gcagggtgaa atagttatcg
     2701 gagagaattt tgtctttaat gagggtgatt tgttgcgtca taccgactcc acagcgcgaa
     2761 atgaacaatt atcttacgct gtgaagtcgg gtttgtctgc gcaggctatc agtgagattt
     2821 gactgatttt acccccagcc agtcaataat cccctgtgcc gcatgacgtc cttctgccat
     2881 tgcggtaacc accagatccg caccacgcac ggcgtcgcca ccggcgaaga ttttcggatt
     2941 ggaggtctgg taacggtact ggctttccac atccgcgatg atgcggcccc atttgtctac
     3001 cgttacaccg tgcgactcca gccacggcat cccgtgcgga ttgaagccaa acgccataat
     3061 caccgcgtcg gctggcatga caaattcact gccttccacc ggtactggac gccgacgccc
     3121 ctgggcatcc ggctcgccaa gacgcgtgcg caggaaacga atcccgcaaa cgtgaccttg
     3181 ttcattcagc tcaagcgcca ccggctggac gttaaattcg aagttggccc cctcttcgcg
     3241 ggcgttcttc acctctttct tcgagcctgg catgttagct tcatcacgac gataagcgca
     3301 ggtgacgtta ctcgcgccgt ggcgcagcgc agtacgcaca cagtccatcg cggtgtcgcc
     3361 gccgcccagt accacgacgt taagtccggc ggtattgata aacggctctt ccggtagctc
     3421 ttcgagcccc atcacctgtt tagtgttggc gatgaggaac ggcagcgcgt cataaacgcc
     3481 cggcgcatct tcattgggta aacccgcttt catggaacgg taagtgccta cgccaacgaa
     3541 gaccgcgtcg tattgttcca aaagcgaatc caaagagaca tctttaccca cttcacaatt
     3601 gagttcgaag tgaatcccca tcgcgctgaa gatttcccga cggcgtgcca gcagggattt
     3661 atccagtttg aaagaaggaa tgccgaaagt gagcaagcca ccgatttctg gatggcgatc
     3721 gtacaccgtc accgccacgc cattgcgggt cagaacatcc gcacaggcca gccctgccgg
     3781 acctgccccg ataatcgcca cccgcttgtc cactttggtg acatgactta agtcaggacg
     3841 ccaacctttc gccaacgcct gatctgaaat atagcgttca atgttgccga tagttaccgc
     3901 gccgtgctca tcgcgaatag tacaggcacc ttcacacaaa cggtcttgcg gacaaacgcg
     3961 tccggtaatt tccggcaggg tgttggtctg gtgagaaagc tcgacggcgg cgtcgatgtt
     4021 tccggctttc accagttcaa tccactgcgg aatatggtta tgcagcgggc aggtccattc
     4081 acaaacgctg tgctcgccgc acttaaggca gcgcgaggct tcccgttatg cctggtcggc
     4141 gcgaaatggc agataaattt catcaaaacc ggttttgcgc gcttcaatcg ccagtttatc
     4201 cggctcgcca cgcgcgggcg ttgcctgcat ttgttcgact ttactcatta ccggcatttc
     4261 ttgtgcagcg gtactggcat gccacggttg atgctcctga cgtgcggtgc gcaagcggcg
     4321 ggatttcgcc atgccggaga gtgcgacgtc agtgaccagt tgcagcgcgt ccgccgggca
     4381 attctcgaca caggcaggac cgttttcgcg ccctgcacaa aggtcgcatt tatgcgccgt
     4441 ggcttttact tttcctgccg cgacgggtgt caggacgatt tgcatcgtac caaacggaca
     4501 ggccaccacg caggatttac agccaataca cttttgctga ttgacctgaa tgctgtcatc
     4561 aacgtggctg attgcgccat tagggcagct acgggcgcag ggcgcatctt cacaatggtg
     4621 acaggtcact gcactacgtt gctgctgatg tttgataacc gtaattcggg gatgaaaatg
     4681 gtgttggctc aggacatgtt gctcatcatt gtgagccatg acacaggcga tttcacaagc
     4741 atgacaaccc agacattgct gactgttggc cataataaaa cgattcataa cgaccttctt
     4801 ttttggttgt aaaaacctta ttctttatat gagtgttgtt attacccgac ttacagggga
     4861 atcggcaatg ttcatgtgcc cagaataagt aactatttcg ctataaactg tggcagctca
     4921 aataatccca tcactgacta aattgcgttt cagcgaactg gaacattaat gattttttgt
     4981 ggagaagacg cgtgtgattg ttaaacgacc cgtctcggcc agtctggccc gggccttttt
     5041 ttacattgtg ctgctgtcga ttctttccac gggtatcgct ctgctaactc tggcgagcag
     5101 tttgcgcgac gctgaggcta tcaatattgc cggatcgctg cgtatgcaga gttaccgcct
     5161 gggctacgac ttgcaaagtg gcagtccaca actcaatgca catcgccagt tgtttcagca
     5221 ggcactgcat tcaccggtat taaccaatct caacgtctgg tatgtgccag aagcagtaaa
     5281 aactcgctat gcgcatctga atgccaactg gctggagatg aataatcggc tcagcaaggg
     5341 cgatttgccg tggtatcagg ccaatattaa taattatgtt aatcagatag acctgttcgt
     5401 gctggcttta cagcactacg ctgaacgcaa aatgctgctg gtggtggcga tttccctggc
     5461 tggcggtatc ggtattttca cgctggtctt ttttactttg cgccgtatac gccatcaggt
     5521 ggttgccccg ctgaatcagc tggttaccgc cagtcaacgt attgaacacg ggcagttcga
     5581 ctcgccgccg ctggatacca gtctgccgaa tgagcttggt ctgcttgcaa aaacctttaa
     5641 ccagatgtcg agcgagctgc ataaattgta cctttcgctg gaggcgtcag tagaagaaaa
     5701 gacccgcgat ctccacgagg ccaagcgtcg tctggaggtg ttgtatcaat gttcgcaggc
     5761 gctgaacaca agccagattg atgtgcattg tttccgccat attttgcaga ttgttcgcga
     5821 caatgaagcg gctgaatatc tggagttaaa tgtcggtgaa aactggcgga ttagcgaagg
     5881 gcaaccaaac ccggaattgc cgatgcagat tttaccggtg acaatgcaag agacggttta
     5941 cggcgaactg cactggcaaa atagtcacgt ttcatcatca gaaccgctgc ttaacagcgt
     6001 ttcgtcgatg ctgggacgcg gtttgtactt taatcaggcg cagaagcatt ttcagcagtt
     6061 attgttgatg gaagaacgtg caaccatcgc ccgcgaattg cacgactcgc tggctcaggt
     6121 actttcttac ttacgtatcc agttgacgtt actgaagcgt tcgataccgg aagataacgc
     6181 caccgcacaa agtatcatgg ccgatttttc cctggcgttg aatgatgctt atcggcagtt
     6241 acgcgagctg ttgactactt tccgcctgac gctgcagcag gcggatctcc cctccgcgtt
     6301 gagggaaatg ctggatacgt tacaaaatca aaccagcgcc aaactgaccc tcgactgccg
     6361 tctgccaacc cttgcgctgg atgcgcaaat gcaggtgcat ttgttgcaaa ttattcgcga
     6421 agcggtgctg aatgcgatga agcacgccaa cgccagcgaa atcgccgtca gttgcgtcac
     6481 cgcgccggac ggcaatcaca cggtttatat ccgtgataac gggattggta tcggtgaacc
     6541 gaaagaaccc gaaggtcatt atggtctgaa tatcatgcgc gaacgcgcgg aacggctggg
     6601 tgggacgctg actttttcac aaccttccgg cggcggcacg ttagtgagta ttagctttcg
     6661 ctctgcagag ggtgaggaaa gtcagttgat gtaatgcctc ctactgacca aagaatactt
     6721 gcacttaagg ttcagtataa aagggcatga taatttacat taactccttt ttttctccac
     6781 gattggctcg taccttgccg ctacagtgaa gcaagtcaag cctacaacga tacgcagaaa
     6841 cacgaggtcc tcttttaatg gcgaatttct ttattgatcg ccccattttt gcctgggtgc
     6901 tggcaatcct gttgtgtctg acagggaccc tggcgatttt ttcattgccc gttgaacaat
     6961 accccgatct cgcgccaccg aatgtgcgag tgaccgctaa ctatcccggc gcatcggccc
     7021 agacgctgga aaacaccgtg ccccaggtta tcgagcaaaa tatgaccggc ctcgataatc
     7081 tcatgtatat gtcatctcag agcagtggca ccggtcaggc atctgtcact ttaagtttta
     7141 aagcaggcac cgatccggac gaagccgtgc agcaagtaca aaaccagctg caatcagcca
     7201 tgcgaaagtt accgcaggcg gtgcaaaatc agggcgtgac ggtgcgtaaa accggcgata
     7261 ccaatattct gaccattgct ttcgtctcta ccgatggttc gatggataaa caggatattg
     7321 ccgattatgt tgccagtaat attcaggacc cgttaagccg cgtgaatggc gtcggggata
     7381 tcgatgccta tggttcgcaa tattccatgc gtatctggct ggccccggcg aaactcaaca
     7441 gtttccagat gacggctaaa gatgtcactg atgccattga gtcacagaac gcgcagattg
     7501 cggttgggca acttggtggt acaccttccg tcgataagca ggcgctcaac gccaccatta
     7561 acgcccagtc actgctgcaa acaccagaac agttccgcga tatcaccttg cgggtgaatc
     7621 aagacggctc agaggtaagg ctgggcgatg tcgccaccgt cgaaatgggg gcggagaaat
     7681 acgattatct tagccgcttc aatggtaagc cagcctccgg gctgggggta aaactggcct
     7741 ccggcgcaaa cgaaatggcg acagggagct ggtgctcaat cgtctcgacg agctggcgca
     7801 gtacttcccg cacggactgg aatacaaggt ggcgtatgaa accacctcgt ttgttaaagc
     7861 ctccattgaa gacgtggtga aaacgctgct ggaagctatc gccctggttt tcctcgttat
     7921 gtatctgttc ctgcaaaact tccgcgccac gctaataccc actatcgccg tgccggtggt
     7981 gttgatggga accttctccg tactttacgc cttcggttac agcgtcaaca ccttaaccat
     8041 gttcgcgatg gtactggcga tcggtctgct ggtggatgac gcaatcgtgg tggtggaaaa
     8101 cgtcgaacgt attatgagtg aggaaggact cactcctcgc gaagccacac gtaaatcgat
     8161 ggggcagatc cagggggcac tggtcgggat tgcgatggtg ctttcggcgg tatttgtacc
     8221 aatggccttc ttcggcggca ccaccggtgc catctatcgc cagttctcta ttaccattgt
     8281 tgcggcgatg gtgctgtcag tactggtagc gatgatcctc actccggctc tgtgtgccac
     8341 actacttaag ccactgaaaa aaggtgagca tcacgggcaa aaaggctttt ttgcctggtt
     8401 taaccagatg tttaaccgca acgccgaacg ctacgaaaaa ggggtggcga aaattctcca
     8461 ccgcagcctg cgctggattg tgatttatgt cctgctgctt ggcggcatgg tgttcctgtt
     8521 cctgcgtttg ccgacgtcgt tcttaccgct ggaagaccgt ggcatgttta ctacctcggt
     8581 acaattgccc agcggttcaa cccaacaaca gaccctgaaa gtcgttgagc aaatcgagaa
     8641 atattacttc acccatgaaa aagacaacat catgtcggtg tttgccaccg ttggttctgg
     8701 ccctgggggt aacgggcaaa acgtggcgcg aatgtttatc cgcctgaaag actggagcga
     8761 acgcgacagt aagaccggca cctcgtttgc cattatcgag cgtgcaacaa aggcgtttaa
     8821 caagattaaa gaagctcgcg ttatcgccag cagcccgcca gcaattagcg gtcttggtag
     8881 ttctgcgggt tttgatatgg agttgcagga ccacgctgga gcaggtcacg atgcgctgat
     8941 ggcagcacgt aaccagttgc tggcgctggc ggcggaaaac ccggagctaa cccgtgtgcg
     9001 ccataacggc ctcgatgaca gtccgcagtt gcagattgat atcgaccagc gtaaagctca
     9061 ggcgctgggc gttgctatcg acgatattaa cgacacactg caaaccgcct ggggttcgag
     9121 ctatgtgaat gactttatgg atcgcggtcg tgtgaagaaa gtctatgtgc aggcagctgc
     9181 gccgtatcgc atgctgccag atgacattaa tctctggtat gtccgaaata aagatggcgg
     9241 catggtgccc ttctctgctt tcgcgacctc acgctgggag actggctcgc cgcgtctgga
     9301 acgctataac ggttattctg cggttgagat tgttggggaa gccgcaccgg gggtcagtac
     9361 cggtacggcg atggatataa tggaatcgtt agtgaagcag ttgccaaacg gctttggtct
     9421 ggagtggacg gcgatgtcgt atcaggagcg gctttccggc gcgcaggctc cggcgctgta
     9481 cgccatttcc ttgctggtgg tattcctgtg tctggcggcg ttgtatgaaa gctggtcggt
     9541 gccgttctcg gtaatgctgg tcgtgccgct gggggttatc ggcgcgctgc tggcaacctg
     9601 gatgcgcggg ctggaaaacg acgtttactt ccaggtgggc ctgttaacgg tcattggttt
     9661 atcggcgaaa aacgccatcc tgatcgtcga gtttgctaac gagatgaacc aaaaaggcca
     9721 cgacctgttt gaagcgacgc tccacgcctg ccgtcagcgt ttacgcccga ttctgatgac
     9781 ctcgctggca tttatcttcg gcgtattgcc aatggcaacc agcacgggtg ccggttccgg
     9841 tggtcagcat gcggtgggta ctggcgtaat gggcgggatg atttcggcca ctattctggc
     9901 tatttacttc gtgccgctgt tctttgtact ggtgcgccgc cgcttcccgc tgaagccgcg
     9961 cccggaataa gcaataaaaa aggcgacatg ctaatgtgtc gcctttttca actttccgat
    10021 taagaacctg ctcagcgggt tcttgctgtt tgtactttgt ctcaggaatt acttacgaag
    10081 cataacttcg ataaagtctt tccagttccc cagttcacgt tcaatcataa caacctctct
    10141 tataattatg ggtattctac ggaaacaata taccgtggtg aagctaattt actcgattgc
    10201 tgcgatgact acctccgggg gacaaacctt atgtaaatac tatggtcctg cggtgataat
    10261 ttgtatgtga tacacagcaa catttcgaga tattcatacg gcatctaata ctgatttaat
    10321 tctggttaaa atacagacag ataacaagat gaatattctt aatgtttacg ttaaaaatgt
    10381 ttaatattat ttaatagttg ttaatttgaa tacttc
//
LOCUS       DADMHM010000138        10360 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.140, whole genome shotgun sequence.
ACCESSION   DADMHM010000138 DADMHM010000000
VERSION     DADMHM010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10360)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10360)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10360
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.140"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(161..1516)
                     /gene="menE"
                     /locus_tag="JN125_002994"
     CDS             complement(161..1516)
                     /gene="menE"
                     /locus_tag="JN125_002994"
                     /EC_number="6.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate--CoA ligase"
                     /protein_id="HAY8872691.1"
                     /translation="MIFSDWPWRHWRQVRGEAIALRLNDEQLNWRELCARVDELATGF
                     AAQGVVEGSGVMLRAWNTPQTLLAWLALLQCGARVLPVNPQLPQPLLEELLPNLTLQY
                     ALVLEGENTFPALTSLHIQMVEGTHSALWQPTRLCSMTLTSGSTGLPKAAVHTYQAHL
                     ASAQGVLSLIPFGDHDDWLLSLPLFHVSGQGIMWRWLYAGARMTVRDKQPLEQMLAGC
                     THASLVPTQLWRLLVNRSSVSLKAVLLGGAAIPVELTEQAREQGIRCFCGYGLTEFAS
                     TVCAKEADGLADVGSPLPGREVKIVNNEVWLRAASMAEGYWRNGQLVSLVNDEGWYAT
                     RDRGEMHNGKLTIVGRLDNLLFSGGEGIQPEEVERVIAAHPAVLQVFIVPVADKEFGH
                     RPVAVVEYDQQTVDLGEWVKDKLARFQQPVRWLTLPPELKNGGIKISRQALKEWVQRQ
                     Q"
     gene            complement(1513..2475)
                     /gene="menC"
                     /locus_tag="JN125_002995"
     CDS             complement(1513..2475)
                     /gene="menC"
                     /locus_tag="JN125_002995"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HAY8872692.1"
                     /translation="MRSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLREGEREGWGE
                     ISPLPGFSQETWEEAQSVLLAWVNNWLAGDCELPQMPSVAFGVSCALAELADTLPQAA
                     NYRAAPLCNGDPDDLILKLADMPGEKVAKVKVGLYEAVRDGMVVNLLLEAIPDLHLRL
                     DANRAWTPLKGQQFAKYVNPDYRHRIAFLEEPCKTRDDSRAFARETGIAIAWDESLRE
                     PDFAFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALRLTAVISSSIESSLGLTQLAR
                     IAAWLTPDTIPGLDTLDLMQAQQVRRWPGSTLPVVEVDALERLL"
     gene            complement(2475..3332)
                     /gene="menB"
                     /locus_tag="JN125_002996"
     CDS             complement(2475..3332)
                     /gene="menB"
                     /locus_tag="JN125_002996"
                     /EC_number="4.1.3.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001641973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA synthase"
                     /protein_id="HAY8872693.1"
                     /translation="MIYPDEAMLYAPVEWHDCSEGFEDIRYEKSTDGIAKITINRPQV
                     RNAFRPLTVKEMIQALADARYDDNVGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSG
                     VHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVG
                     SFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWC
                     REMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQP
                     DFSKFKRNP"
     gene            complement(3347..4105)
                     /gene="menH"
                     /locus_tag="JN125_002997"
     CDS             complement(3347..4105)
                     /gene="menH"
                     /locus_tag="JN125_002997"
                     /EC_number="4.2.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase"
                     /protein_id="HAY8872694.1"
                     /translation="MILHAQAKHGKPGLPWLVFLHGFSGDCHEWQEVGEAFADYSRLY
                     VDLPGHGGSAAISVDGFDDVTDLLRKTLVSYNILDFWLVGYSLGGRGAMMAACQGLAG
                     LCGVIVEGGHPGLQNAEQRAERQRSDRQWAQRFRTEPLTAVFADWYQQPVFASLNDDQ
                     RRELVALRSNNNGATLAAMLEATSLAVQPDLRANLSARTFAFYYLCGERDSKFRALAA
                     ELAADCHVIPRAGHNAHRENPAGVIASLAQILRF"
     gene            complement(4102..5772)
                     /gene="menD"
                     /locus_tag="JN125_002998"
     CDS             complement(4102..5772)
                     /gene="menD"
                     /locus_tag="JN125_002998"
                     /EC_number="2.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-5-enolpyruvyl-6-hydroxy-3-
                     cyclohexene-1-carboxylic-acid synthase"
                     /protein_id="HAY8872695.1"
                     /translation="MSVSAFNRRWAAVILEALTRHGVRHICIAPGSRSTPLTLAAAEN
                     SAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLIL
                     LTADRPPELIDCGANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLH
                     AGGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAPSLESEKQRDWFFWR
                     QKRGVVVAGRMSAEEGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSEL
                     QQAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWL
                     ELHPAEKRQPWCVEIPRLAEQAMQAVIARRDAFGEAQLAHRISDYLPEQGQLFVGNSL
                     VVRLIDALSQLPAGYPVYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLN
                     ALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNVHFEHAAAMFELKY
                     HRPQNWQELETAFADAWRTPTTTVIEMVVNDTDGAQTLQQLQAQVSHL"
     gene            complement(5861..7156)
                     /gene="menF"
                     /locus_tag="JN125_002999"
     CDS             complement(5861..7156)
                     /gene="menF"
                     /locus_tag="JN125_002999"
                     /EC_number="5.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416768.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase MenF"
                     /protein_id="HAY8872696.1"
                     /translation="MQSLTTALENLLRHLSQEIPATPGIRVIDIPFPLKDAFDALSWL
                     ASQQTYPQFYWQQRNGDEEAAVLGAITRFTSLDQAQRFLRQHPEHADLRIWGLNAFDP
                     SQGNLLLPRLEWRRCGGKATLRLTLFSESSLQHDAIQAKEFIATLVSIKPLPGLHLTT
                     TREQHWPDKTGWTQLIELATKTIAEGELDKVVLARATDLHFASPVNAAAMMAASRRLN
                     LNCYHFYMAFDGENAFLGSSPERLWRRRDKALRTEALAGTVANHPDDKQAQQLEEWLM
                     ADDKNQRENMLVVEDICQRLQADTQTLDVLPPQVLRLRKVQHLRRCIWTSLNKADDVI
                     CLHQLQPTAAVAGLPRDLARQFIARHEPFTREWYAGSAGYLSLQQSEFCVSLRSAKIS
                     GNVVRLYAGAGIVRGSDPEQEWQEIDNKAAGLRTLLQME"
     gene            complement(7235..7540)
                     /gene="elaB"
                     /locus_tag="JN125_003000"
     CDS             complement(7235..7540)
                     /gene="elaB"
                     /locus_tag="JN125_003000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response protein ElaB"
                     /protein_id="HAY8872697.1"
                     /translation="MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAE
                     KALDDVKKRVSQVSDSYYYRAKQAVYRADDYVHEKPWQGIGVGAAVGLVLGLLLARR"
     gene            complement(7595..8056)
                     /locus_tag="JN125_003001"
     CDS             complement(7595..8056)
                     /locus_tag="JN125_003001"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAY8872698.1"
                     /translation="MIEWQDLHHSELSVSQLYALLQLRCAVFVVEQNCPYQDIDGDDL
                     TGNNRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLDT
                     CTHHWPDKPVYLGAQAHLQNFYQSFGFIPVTEVYEEDGIPHIGMAREVIQA"
     gene            8121..9038
                     /gene="rbn"
                     /locus_tag="JN125_003002"
     CDS             8121..9038
                     /gene="rbn"
                     /locus_tag="JN125_003002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416771.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease BN"
                     /protein_id="HAY8872699.1"
                     /translation="MELIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQ
                     HQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVE
                     TALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHDKPGALN
                     AQALKAAGVPPGPLFQELKAGKTIMLEDGRQINGADYLAAPVPGKALAIFGDTGPCDA
                     ALDLAKGVDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYD
                     DKGCQHLLRECRSIFPATELANDFTVFNV"
     gene            9226..10360
                     /gene="elaD"
                     /locus_tag="JN125_003003"
                     /pseudo
     CDS             9226..10360
                     /gene="elaD"
                     /locus_tag="JN125_003003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416772.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="deubiquitinase"
BASE COUNT         2554 a         2882 c         2505 g         2419 t
ORIGIN      
        1 tgctgcacgc ttacgtttat tgcagcacga ttttttgacc agccattcca ttgcattatc
       61 ctgtttgcta agagttttca catcaattta cagattaaca gataaactct ttatcaacgg
      121 caatggaatg gcagaaatga gaagtgaaac ggagggttaa ttattgctga cgttgcaccc
      181 actcttttag cgcctgacgt gaaattttaa taccgccgtt tttcagctcc ggcggtaaag
      241 tcagccagcg caccggttgt tgaaaacgag ccagcttatc tttcacccat tcgccaagat
      301 caacggtttg ctggtcatac tccaccaccg ctaccggccg atgaccaaac tccttgtcgg
      361 caacgggaac gataaacacc tgcaaaaccg caggatgtgc agcaataaca cgctcgactt
      421 cttccggctg aataccctca ccgccactga ataacagatt gtctaaacgt ccgacaatgg
      481 tcagcttgcc attatgcatc tcaccgcgat cgcgcgtagc gtaccagcct tcgtcattaa
      541 ccagtgaaac cagttgcccg ttacgccagt aaccttctgc catactggca gcccgcagcc
      601 acacttcatt attaacgatt ttcacttccc gacccggcag cggcgaacca acgtctgcca
      661 ggccgtcggc ttctttcgca cataccgtgg aggcaaactc ggtcagacca tagccgcaaa
      721 agcaacgaat cccctgctcg cgcgcctgtt ccgtcaactc gaccgggata gccgcgccgc
      781 caagtaacac cgctttcagg gaaacggaac tgcggttaac cagcaaacgc cagagttgtg
      841 ttggcaccag tgaagcgtga gtacagcctg ccagcatttg ctccaatggc tgtttatcac
      901 gcaccgtcat ccgcgcacca gcgtataacc agcgccacat aattccctga ccggagacgt
      961 gaaacagcgg taaagagagc aaccagtcat cgtgatcgcc aaacggaatc agcgataaca
     1021 caccttgcgc actggcaaga tgggcctgat aagtatggac agcggctttc ggtaaaccgg
     1081 tggagccgga ggtcaatgtc attgaacaaa gacgtgttgg ttgccacaga gctgaatgtg
     1141 tgccttcaac catctgaata tgcagtgaag ttaacgccgg gaaagtattt tctccttcca
     1201 gcaccagcgc atattgcagt gtaagatttg gcagtaattc ctcaagcaac ggttgcggaa
     1261 gctgtggatt tacgggcagc acccgcgccc cgcattgcag taacgccagc caggcgagca
     1321 gcgtttgcgg cgtattccac gcccgcaaca tcacgccgct gccctcaacc acaccctgcg
     1381 ccgcaaagcc cgtagctaac tcatcgacgc gagcacaaag ctcgcgccag ttgagttgct
     1441 cgtcattaag acgtaaggcg atggcttctc cccgcacttg ccgccagtga cgccacggcc
     1501 agtcagagaa gatcataaca accgctccag tgcatcaact tccacgacag gcagcgtgct
     1561 acccggccag cgacgtacct gctgcgcctg catcagatcc agcgtgtcca gccctggaat
     1621 ggtgtccggc gttaaccagg cggcaatccg cgccagttgc gttaagccta agctcgactc
     1681 aatagaagaa ctgatcaccg ccgtcagcct caacgcgtgc gccgcctgta cctgctcgcg
     1741 tactttttcc agactgcccg tgagcgtggg tttgataact accgcgcgca cgccctcttc
     1801 agccacaaag gcaaaatccg gctcgcgcag gctttcatcc caggcaatgg caatgcctgt
     1861 ttcacgggca aacgctcgcg aatcatcgcg ggttttgcac ggctcttcga gaaacgcgat
     1921 gcggtggcga taatccgggt taacatattt ggcaaactgc tgacctttca gcggtgtcca
     1981 ggcgcgattt gcgtcaagac gcaaatgcag atccggaatt gcctccagca acagattaac
     2041 caccatgccg tcgcgcacgg cttcgtacaa tcccactttg accttcgcca ctttctcgcc
     2101 tggcatatca gcaagtttga ggatcagatc gtcaggatcg ccattacaca gtggtgccgc
     2161 acggtaattg gccgcctgcg ggagcgtatc tgccagctcc gccaatgcac agcttacgcc
     2221 aaaggcaacg gaaggcatct gcggtagctc gcaatcgcct gccagccagt tatttaccca
     2281 ggcaagcagc acgctttgcg cctcttccca ggtttcctgg ctgaagcccg gcagtgggga
     2341 gatctccccc cacccttcgc gctcgccctc acgcaggcaa acgtacagcc cgtcgcgggt
     2401 ttttaaccgc ctgtcgcgca gaaccacccc cgcgtccatg gggatctgcc agcggtatac
     2461 ctgcgcgcta cgcattacgg attccgttta aatttgctga aatcaggctg acgtttctgg
     2521 ttgaaagcgt tgcgaccttc ctgaccttct tccgtcatgt agaacagcat ggtggcgttg
     2581 cccgccagct cctgcagccc cgcctgcccg tcacagtcgg cgttcagtgc agctttcagg
     2641 cagcgcagcg ccatcggact gttttgcagc atttcgcggc accagcgaac ggtttctttt
     2701 tccagatccg ccagcggtac cacggtgttg acaaggccca tatccagcgc ctgtttcgcg
     2761 tcgtactgac ggcacaggaa ccagatttcc cgcgcttttt tctgtccgac gatgcgagcc
     2821 atgtaggaag cgccccagcc gccgtcgaag gaaccgactt tcgggccagt ctgaccgaag
     2881 atggcattat ctgccgcgat agtcaggtcg cacatcatgt gcagaacgtg accgccgccg
     2941 atggagtagc cagccaccat cgcgacaacc ggtttcggac aggtacggat ctgacgctgg
     3001 aagtccagca cgttcaggtg atgtacgccg gaatcatctt tatagccgcc gtaatcacca
     3061 cgcactttct ggtcaccgcc ggagcagaac gctttatcac ctgcgccagt cagaatgatc
     3121 acgccgacgt tgtcgtcata acgcgcatct gccagtgcct ggatcatctc ttttaccgtc
     3181 agaggacgga aggcattgcg cacctgcgga cgattaatgg tgatttttgc gataccatcg
     3241 gtggattttt cataacgaat gtcctcgaaa ccttcggagc agtcgtgcca ttcaaccggt
     3301 gcgtaaagca ttgcttcatc aggataaatc atattgtgtc ctttagtcag aaacgcaaga
     3361 tctgcgccag acttgcgatt acgccagcgg gattttcccg atgcgcgtta tgtccggcgc
     3421 gaggaatgac atggcagtcg gcagccagtt ccgccgccag ggcgcggaat ttgctgtcac
     3481 gttcaccaca taaataataa aacgcaaatg tgcgggcgct aaggttagca cgtaaatcag
     3541 gctggacggc gagagaagtc gcctccagca tggcggcaag ggttgcgcca ttattgttgc
     3601 tgcgcagcgc caccagctcc cggcgttgat cgtcattgag cgaggcaaaa acaggctgtt
     3661 gataccagtc ggcaaatacc gccgttaacg gttctgtgcg aaaacgctgc gcccattggc
     3721 gatcggaacg ctgacgttcc gcacgttgtt cagcattttg cagccccgga tgcccgcctt
     3781 cgacaataac cccacaaagc cccgccagcc cctggcaagc cgccatcatc gccccccgtc
     3841 cgccaagcga gtaccccacc agccagaagt caaggatgtt gtaactaacc aaggttttac
     3901 gcagtaagtc ggtgacatca tcaaatccat cgacgctaat cgccgccgaa ccaccatgac
     3961 ctgggagatc aacatacaac cgtgagtagt cggcaaacgc ctcgcccact tcttgccatt
     4021 cgtggcaatc gccggaaaaa ccgtgcaaaa acaccagcca gggtaaacct ggttttccgt
     4081 gttttgcctg cgcgtgcagg atcataaatg gcttacctgc gcctgaagtt gctggagcgt
     4141 ttgcgcacca tcggtgtcgt taaccaccat ttcaatcacc gtggtggttg gcgtgcgcca
     4201 ggcgtcggca aatgccgttt caagttcctg ccagttttgc ggacgatgat atttcagctc
     4261 gaacatcgcg gcggcgtgct caaaatggac gttttgcggc atcagataga aacgctcacg
     4321 ctcgctttgc ggcgttggca acagcgagaa aatttgcccg ccgttgttgt tcaccacaat
     4381 taataccagc ggcgcagaaa cctgacgcaa taacgccagc gcgttgagat cgtaaagtgc
     4441 ggagagatcg cccacaatcg ccagcgtcgg tttgccgctt gcccgctgaa cgcctgcggc
     4501 ggtcgaaagc agtccgtcga taccgctggc ccctcggttg ctgtacaccg ggtaacctgc
     4561 cggaagttgc gaaagcgcat caatcagacg taccaccagg ctgttaccga caaacaattg
     4621 cccctgttca ggcagatagt cgctgatgcg atgcgccagt tgcgcttcgc caaacgcatc
     4681 gcgacgggca ataaccgcct gcattgcctg ttccgccagg cgcgggattt caacgcacca
     4741 gggctggcgt ttttctgccg gatgcagctc cagccagtcg gcaatattgg caattaagcg
     4801 gcgtccacga tggtgcgccg gatcaagccg cccttcgatg tcatccacaa tccagtactc
     4861 ttcgggttca cagcttgcct gccattgcag gagccgtttg cccgtcaggc tgcttcccag
     4921 ttgcaccaca atttgcgcct gctgcagctc gctggtcgct ttggcattgc ctaaccaaag
     4981 atcggcacac ggcagcggct gcccggtttg tgacagcaca tcgccaatca gcggccagcc
     5041 aagagtttgc gcccacaggg caactttttt gccctcttcc gcactcatgc gcccggcaac
     5101 caccacgccg cgcttttgtc gccagaagaa ccagtcgcgc tgtttttcac tttccagact
     5161 aggcgcttca cgcagccacg gtttgtcgtc ctgccaccag tcacccagac gctgttgcca
     5221 gctaagcccg gtatcgtcca tttcgccata cagcggttca gcaaacgggc agttgatatg
     5281 gactcccccc gcatgaagcg taccgagagc gtggtcgatg gtagaaacca gccaacgtgc
     5341 ggggatatcc tgggtcgggc gcggcaatga aatactgtgc gtggggtgag aggcgaacat
     5401 tcccggctgg cgaattgcct gattcgcgcc gcagtcaatt agctccggcg ggcgatcggc
     5461 ggttaagaga atcagttttt ctccggttaa cccggcttca atcagtgccg gatagagatt
     5521 tgccaccgcc gtgccggagg tcacaatcac cgccaccggc tgcttgctga ctttcgccag
     5581 ccccagcgcc agatgcccca acccacgctc atcgaaatgg gtgtggtgaa tgaatgcgga
     5641 attctccgcc gccgctaacg ttaacggtgt agaacgcgag cctggggcga tacagatgtg
     5701 tctgacgccg tgacgcgtta atgcttccag aatgaccgcc gcccagcgtc ggttaaatgc
     5761 gcttactgac atgagtttgt ccggtatcaa tattgcggct aagtataagg agctacaaaa
     5821 atagattatt gatatgaatc ggtaatgatg cgactcatta ctattccatt tgtaataaag
     5881 tacgcaaccc tgccgctttg ttgtcgattt cctgccactc ttgctcgggg tcggaaccac
     5941 ggacaatgcc cgcgccagca tataatcgca cgacattgcc gctaattttt gctgagcgca
     6001 gggaaacgca gaattcgctt tgttgtaatg agagatagcc cgcagaaccg gcgtaccatt
     6061 ctcgggtgaa cggttcgtga cgggcgataa actgtcgcgc cagatcgcgc ggtaagccag
     6121 caactgctgc cgttggctgc aactgatgta aacagatcac atcatccgct ttgttgagtg
     6181 aagtccagat acagcggcga agatgctgca ctttacgcag acgcagtacc tgcggcggta
     6241 aaacatccag cgtctgggta tcggcctgta atcgttggca gatatcttcc accaccagca
     6301 tgttctcgcg ctggttttta tcatccgcca tcagccactc ttctaactgc tgcgcctgct
     6361 tatcatcagg atgatttgct actgttcccg ccagcgcttc agtacgcagc gctttgtcac
     6421 gccgccgcca taaccgttcc ggtgaagagc caagaaaagc attttcgcca tcaaaggcca
     6481 tgtaaaaatg gtagcaattc agattcagtc gacgactggc agccatcatc gccgccgcgt
     6541 tgaccggact tgcgaaatgc aggtcagttg cccgagcgag caccactttg tcgagctcac
     6601 cttcggcgat ggttttcgtt gccagttcga ttaattgcgt ccagcccgtt ttgtccggcc
     6661 agtgttgttc tcgcgtggtg gttaaatgta acccaggcaa gggcttgata ctcaccagtg
     6721 tggcgataaa ttcttttgcc tgaatcgcat cgtgctgaag ggagctttcg ctgaatagcg
     6781 tcagccgcag cgtggcttta ccgccacagc gtcgccattc caagcggggt aaaagtaaat
     6841 tgccctgcga cgggtcaaaa gcattcagcc cccaaatgcg taagtcggcg tgttccgggt
     6901 gctggcgaag aaaacgttgt gcctggtcca acgacgtaaa acgggtaatc gcgcccagga
     6961 cggcagcttc ttcatcacca ttacgttgtt gccagtagaa ttgcgggtac gtttgctgac
     7021 tggccagcca gctcaaggca tcaaaagcgt ctttgagagg gaaaggaata tcgataaccc
     7081 gaatgccggg tgtcgccgga atctcttgcg acaaatggcg cagtagattt tccagcgccg
     7141 tagtaagtga ttgcacgcgg acctctccct gttaaaagcc tcacattata cggggtacta
     7201 caaaaaaaat gcagtacccc ggtgtaggga ggttttaacg gcgtgccagc aacagtccta
     7261 gtaccagccc aacggccgcg cccacaccaa ttccttgcca aggtttttcg tggacgtagt
     7321 catcagcacg ataaacagcc tgcttcgccc gatagtaata actgtctgaa acctggctaa
     7381 cccgtttttt cacatcatcc agcgcttttt ctgcacgcgc tttcagctca acatatttct
     7441 gatcagcggg atcgccagag gagcggagca cctcttccag tgtttcacta agcagcgtca
     7501 ggtcgtcatc gatacgtgta tcaccaaact gattagacat tctcgttctc catttgcgta
     7561 aaacctgtca ctaactatag acaagggttg ttgattacgc ctgaattacc tcgcgtgcca
     7621 tcccaatgtg tgggatacca tcttcttcat agacctccgt cacagggata aaaccgaaac
     7681 tctggtagaa gttttgcaga tgcgcctgcg ccccgaggta aacaggctta tcaggccagt
     7741 gatgcgtgca ggtgtcgagg gttttactca tcagttgctg ccccactttt tcgccacgca
     7801 acgcttcact gacaatcacc cgaccaataa cgaccggctc aagatcatca tcacttttca
     7861 gaatcctcgc atatgccacc agttcatcat ttttccaacc gagaatatgg cgattattcc
     7921 ccgtcaaatc atcaccatcg atatcctgat aagggcaatt ctgctcgaca acaaacaccg
     7981 cgcaacgcag ttgtaataag gcataaagct gggaaaccga taattcagag tgatgcagat
     8041 cttgccattc aatcataatg ctctcctttt agatgtatgc cttatactag ccggaatatt
     8101 ttttgaaacg tgatgaactc atggaattaa tttttttagg tacttcagcc ggtgtgccaa
     8161 cccgcacgcg caatgtcacg gcaatattgc ttaacctgca acatccgacc cagagcggac
     8221 tttggttgtt tgactgcggt gaaggcaccc agcatcagct actgcatacc gcctttaacc
     8281 ctggaaaact ggacaagatt tttatcagtc accttcatgg cgatcatctt tttggtttac
     8341 ccggcttgct gtgcagtcgt tctatgtcag gcattatcca acccttaacg atttatggtc
     8401 cgcaaggtat ccgtgaattt gtggaaaccg cgctgcggat tagcggctca tggaccgatt
     8461 atccgctgga aattgtcgaa attggcgctg gcgaaattct cgatgatggc ctgcgcaaag
     8521 taaccgctta tccgctggaa cacccactgg aatgttatgg ctatcgtatt gaagaacatg
     8581 ataaaccggg tgcattaaat gcccaggcat taaaagctgc tggcgtgccg cctggcccac
     8641 tgtttcagga attaaaagcg ggcaaaacaa tcatgctgga agatggaagg cagattaacg
     8701 gcgcagatta cttagctgct ccagtgccag gtaaagcgct cgctattttc ggcgataccg
     8761 gcccctgcga tgccgcactt gacctggcta aaggtgtcga tgtcatggtg cacgaagcga
     8821 cgctggatat aaccatggaa gccaaagcca atagtcgcgg ccatagctct acacgccagg
     8881 ctgcgacact agcccgtgag gctggagtcg gtaagctaat cattacccac gtcagctcgc
     8941 gctatgatga caaaggttgt cagcacctgt tacgtgaatg caggtcaatt ttcccggcga
     9001 ctgaactagc gaatgatttc accgtgttta acgtttaact ctgcttatta ttaaaaacag
     9061 ggcgaaactt gccctgttat cgcaacccgc gctacatata tccacccaca cgggcatatt
     9121 gagcgatttt tgatatttat tcatctcctt acgcactata ttcagagcaa taagttgcct
     9181 ctttttatct tcattcagca caacctttgc aactaaaagg agcccatgat ggttacagtt
     9241 gtcagcaatt attgtcaatt atctcaaacc caactcagtc agacatttgc agaaaaattt
     9301 actgggaccg aggaattact gcagtcttta aaaaaacagc gttatccgga gatgaagaaa
     9361 gtattgagtt actgcataat attgcgttag gttatgatga atttggaaaa aaagctgaag
     9421 atattcttta ccatattgtt agaaacccaa caaatgagac cctatcgatt atccgactta
     9481 ttaaaaatgc ctgtttaaaa ttatataatt tggcacatac cgcaaccaac tcccacctta
     9541 aaccaactgg tccggataat tcagatgttc tcctattcaa aaagctattc tccccttcga
     9601 aattaatgac aattatcggt gatgaaattc ctcttatatc tgaaaaacag tcgctttcaa
     9661 aggtgctttt aaatgatgag aataatgaac tgagtgatgg tacaaacttc tgggataaaa
     9721 atcgtcaatt aaccacagat gaaatagctt gctatcttca gaagatcgcc gctaatgcaa
     9781 aaaatactca agtcaattat cctactggtc tctacgtccc ctactccacc agaactcacc
     9841 tggaagacgc tctcaatgaa aatattaaga gcgatccatc atggccgaat gaagtccagt
     9901 tattccccat aaatactggc ggacactgga tattagtttc gctacagaaa atagtaaata
     9961 aaaaaataat aaactacaaa taaaatgtgt catattcaac tcattgcgtg cactaggcca
    10021 tgataaagaa aattcactta agcgtgtcat taatagtttt aattctgaac tcatgggaga
    10081 aatgtcgaat aataatataa aagttcattt aaatgaacca gagataatat ttttacatgc
    10141 cgatcttcag caatacttaa gccaaagttg cggtgcgttt gtgtgcatgg cagcccagga
    10201 agtgattgaa caaagggaaa gcaattctga cagcgccccc tatacgttat taaaaaacta
    10261 tgctgacaga tttaaaaaat attcagcaga agagcagtgc aaaattgatt ttcaacatcg
    10321 actggtaaac aggaattgtt atttagataa atatggcgat
//
LOCUS       DADMHM010000139        10246 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.141, whole genome shotgun sequence.
ACCESSION   DADMHM010000139 DADMHM010000000
VERSION     DADMHM010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10246)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10246)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10246
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.141"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..206)
                     /gene="marB"
                     /locus_tag="JN125_003004"
     CDS             complement(<1..206)
                     /gene="marB"
                     /locus_tag="JN125_003004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiple antibiotic resistance protein MarB"
                     /protein_id="HAY8872700.1"
                     /translation="MKPLSSAIAAALILFSAQGVAEQTTQPVVTSCANVVVVPPSQEQ
                     PPFDLNHMGTGSDKSDALGVPYYN"
     gene            complement(238..621)
                     /gene="marA"
                     /locus_tag="JN125_003005"
     CDS             complement(238..621)
                     /gene="marA"
                     /locus_tag="JN125_003005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707445.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MDR efflux pump AcrAB transcriptional activator
                     MarA"
                     /protein_id="HAY8872701.1"
                     /translation="MSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQR
                     MFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDV
                     PPHKYRMTNMQGESRFLHPLNHYNS"
     gene            complement(641..1075)
                     /gene="marR"
                     /locus_tag="JN125_003006"
     CDS             complement(641..1075)
                     /gene="marR"
                     /locus_tag="JN125_003006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310164.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multiple antibiotic resistance transcriptional
                     regulator MarR"
                     /protein_id="HAY8872702.1"
                     /translation="MKSTSDLFNEIIPLGRLIHMVNQKKDRLLNEYLSPLDITAAQFK
                     VLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTT
                     SGAAICEQCHQLVGQDLHQELTKNLTADEVATLEHLLKKVLP"
     gene            1287..1952
                     /gene="marC"
                     /locus_tag="JN125_003007"
     CDS             1287..1952
                     /gene="marC"
                     /locus_tag="JN125_003007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAAT family transporter MarC"
                     /protein_id="HAY8872703.1"
                     /translation="MLDLFKAIGLGLVVLLPLANPLTTVALFLGLAGNMNSAERNRQS
                     LMASVYVFAIMMVAYYAGQLVMDTFGISIPGLRIAGGLIVAFIGFRMLFPQQKAIDSP
                     EAKSKSEELEDEPSANIAFVPLAMPSTAGPGTIAMIISSASTVRQSSTFADWVLMVAP
                     PLIFFLVAVILWGSLRSSGAIMRLVGKGGIEAISRLMGFLLVCMGVQFIINGILEIIK
                     TNH"
     gene            complement(1977..3167)
                     /gene="ydeA"
                     /locus_tag="JN125_003008"
     CDS             complement(1977..3167)
                     /gene="ydeA"
                     /locus_tag="JN125_003008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-arabinose MFS transporter"
                     /protein_id="HAY8872704.1"
                     /translation="MTTNTVSRKVAWLRVVTLAVAAFIFNTTEFVPVGLLSDIAQSFH
                     MQTAQVGIMLTIYAWVVALMSLPFMLMTSQVERRKLLICLFVVFIASHVLSFLSWSFT
                     VLVISRIGVAFAHAIFWSITASLAIRMAPAGKRAQALSLIATGTALAMVLGLPLGRIV
                     GQYFGWRMTFFAIGIGALITLLCLIKLLPLLPSEHSGSLKSLPLLFRRPALMSIYLLT
                     VVVVTAHYTAYSYIEPFVQNIAGFSANFATALLLLLGGAGIIGSVIFGKLGNQYASAL
                     VSTAIALLLVCLALLLPAANSEIHLGVLSIFWGIAMMIIGLGMQVKVLALAPDATDVA
                     MALFSGIFNIGIGAGALVGNQVSLHWSMSMIGYVGAVPAFAALIWSIIIFRRWPVTLE
                     EQTQ"
     gene            complement(3317..4023)
                     /gene="yneK"
                     /locus_tag="JN125_003009"
                     /pseudo
     CDS             complement(3317..4023)
                     /gene="yneK"
                     /locus_tag="JN125_003009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011379213.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putative protein YneK"
     gene            complement(3972..4430)
                     /gene="yneK"
                     /locus_tag="JN125_003010"
     CDS             complement(3972..4430)
                     /gene="yneK"
                     /locus_tag="JN125_003010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001598467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative protein YneK"
                     /protein_id="HAY8872705.1"
                     /translation="MVTPVSISNYISLPDDFPVRNIAPQVKEVLKNFIDALSTIICDE
                     EWRTSLNTNSATKKTFNNLDNLSYIQKTSFRGNDTLYNEKVQFKLTYPVKNGRHKENI
                     EFQVVINLSPIYLDNFRHDGEINIFALPTQSLSLWGAYFTPASSVCSFCF"
     gene            complement(4508..5389)
                     /locus_tag="JN125_003011"
     CDS             complement(4508..5389)
                     /locus_tag="JN125_003011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY8872706.1"
                     /translation="MDLTQLEMFNAVAEAGSITQAAAIVLRVPSNLTTRLRQLETELG
                     VDLFIRENQRLRLSPAGHNFLRYSQQILALVDEARSVVAGDEPQGLFSLGSLESTAAV
                     RIPATLAEFNHRYPKIQFSLSTGPSGTMLEGVLEGKLNAAFIDGPINHTAIDGIPVYR
                     EELMIVTPQGHAPVIRASQVNGSNIYAFRANCSYRRHFESWFHADGAAPGTIHEMESY
                     HGMLACVVAGAGIALIPRSMLESMPGHHQVEAWPLAEQWRWLTTWLVWRRGAKTRPLE
                     AFIQLLDVPDSAKQGYQ"
     gene            5490..6878
                     /gene="sad"
                     /locus_tag="JN125_003012"
     CDS             5490..6878
                     /gene="sad"
                     /locus_tag="JN125_003012"
                     /EC_number="1.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416042.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate-semialdehyde dehydrogenase"
                     /protein_id="HAY8872707.1"
                     /translation="MTITPATHAISINPATGEQLSVLPWAGANDIENALQLAAAGFRD
                     WRETNIDYRAEKLRGIGKALRARSEEMAQMITREMGKPINQARAEVAKSANLCDWYAE
                     HGPAMLKAEPTLVENQQAVIEYRPLGTILAIMPWNFPLWQVMRGAVPIILAGNGYLLK
                     HAPNVMGCAQLIAQVFKDAGIPQGVYGWLNADNDGVSQMIKDSRIAAVTVTGSVRAGA
                     AIGAQAGAALKKCVLELGGSDPFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFII
                     EEGIASAFTERFVAAAAALKMGDPRDEENALGPMARFDLRDELHHQVEKTLAQGARLL
                     LGGEKMAGAGNYYPPTVLANVTPEMTAFREEMFGPVAAITVAKDAEHALELANDSEFG
                     LSATIFTTDETQARQMAARLECGGVFINGYCASDARVAFGGVKKSGFGRELSHFGLHE
                     FCNIQTVWKDRI"
     gene            6942..7868
                     /gene="glsB"
                     /locus_tag="JN125_003013"
     CDS             6942..7868
                     /gene="glsB"
                     /locus_tag="JN125_003013"
                     /EC_number="3.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaminase B"
                     /protein_id="HAY8872708.1"
                     /translation="MAVAMDNAILENILRQVRPLIGQGKVADYIPALATVDGSRLGIA
                     ICTVDGQLFQAGDAQERFSIQSISKVLSLVVAMRHYSEEEIWQRVGKDPSGSPFNSLV
                     QLEMEQGIPRNPFINAGALVVCDMLQGRLSAPRQRMLEVVRGLSGVSDISYDTVVARS
                     EFEHSARNAAIAWLMKSFGNFHHDVTTVLQNYFHYCALKMSCVELARTFVFLANQGKA
                     IHIDEPVVTPMQARQINALMATSGMYQNAGEFAWRVGLPAKSGVGGGIVAIVPHEMAI
                     AVWSPELDDAGNSLAGIAVLEQLTKQLGRSVY"
     gene            7868..8227
                     /locus_tag="JN125_003014"
     CDS             7868..8227
                     /locus_tag="JN125_003014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4186 domain-containing protein"
                     /protein_id="HAY8872709.1"
                     /translation="MQSLDPLFARLSRSKFRSRFRLGMKERQYCLEKGAPVIEQHAAD
                     FVAKRLAPALPANDGKQTPMRGHPVFIAQHATATCCRGCLAKWHNIPQGVSLSEEQQR
                     YIVAVIYHWLVVQMNQP"
     gene            8366..9784
                     /locus_tag="JN125_003015"
     CDS             8366..9784
                     /locus_tag="JN125_003015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310156.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HAY8872710.1"
                     /translation="MHVHPISTFRLFQEGHLLRNSIAIFALTTLFYFIVAELRLVHEL
                     SLFWPLNGVMAGVFARYVWLNRLHYYAISYVAMLVYDAITTEWGLVSLVINFSNMMFI
                     VTVALLVVRDKRLGKNKYEPVSALRLFNYCLIAALLCAIVGAIGSVSIDSLDFWPLLA
                     DWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIALIVSVIASVVIGGAGSLAF
                     PLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISVGSPFSIPEMFSARLGIA
                     TMAICPIMVSFSVAAINSLMKQVALRADFDFLTQVYSRSGLYEALKSPSLKQTQHLTV
                     MLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLVARMGGEEFAVAVPSVNP
                     VDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASYRTLTDDFNKLMVEADTC
                     LYRSKKDGRNRTSTMRYGEEVV"
     gene            10011..>10246
                     /locus_tag="JN125_003016"
     CDS             10011..>10246
                     /locus_tag="JN125_003016"
                     /EC_number="1.1.1.58"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310155.1"
                     /note="catalyzes the formation of D-tagaturonate from
                     D-altronate; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagaturonate reductase"
                     /protein_id="HAY8872711.1"
                     /translation="MKTLNRRDIPGAQYPERIIQFGEGNFLRAFVDWQIDLLNEHTDL
                     NSGVVVVRPIETSFPPSLSTQDGLYTTIIRGLNE"
BASE COUNT         2562 a         2353 c         2643 g         2688 t
ORIGIN      
        1 tgattataat agggcacgcc gagcgcatcc gacttatcac tgccagtacc catgtgattt
       61 aaatcaaacg gtggttgttc ctgcgatggg ggaacaacca cgacattggc acaagaagta
      121 acaactggct gcgtggtttg ttccgcaacg ccctgcgcgg aaaagagaat aagcgcagct
      181 gctattgcgg atgaaagtgg tttcatgatt gcctcagtga cgttgtcacg ttatcaacta
      241 gctattgtaa tgatttaatg gatgtaaaaa gcgcgattcg ccctgcatat tggtcatccg
      301 gtatttatgt ggcggaacat caaagtaatt tttgaaggtt cgggtcagag tttgttgcga
      361 ctcgaagcca tatcgttctg ccagatagag tatcggctcg ttactttcct tcagcttttg
      421 cgcgatttcc gtcatcttac ggctgcggat gtattggcct aatgaatgac cggtttcttt
      481 tttaaacatc cgttgcaggt gccatttaga gtaacctgaa cgctctgaca ctttctccag
      541 tgacagtggc gattccaggt tgtcctcgat ccagtccaaa atgctatgaa tggtaatagc
      601 gtcagtattg cgtctggaca tcgtcatacc tcttttttgt ttacggcagg actttcttaa
      661 gcaaatgctc aagtgttgcc acttcgtccg ccgtcaggtt ttttgttaat tcttgatgca
      721 ggtcctggcc aactaattga tggcattgtt cgcatattgc cgcgccgctg gtggtaagtt
      781 ttaccagtac gccgcgctta tcattcgggt tcggcaacct ttcaacccag cctttacaga
      841 ccaggcgatc cagcatacgg gtcagtgctc caaggtcgac agacaacact tttttcagtt
      901 caaccggagt aatacacgcc gcgcagcgga tagagcagag caccttaaac tgtgccgcgg
      961 taatatccag cggagacaga tactcgttaa gcagacgatc tttcttctga ttaaccatat
     1021 ggattaagcg acccaatgga ataatttcat tgaacagatc gctggtactt ttcacattag
     1081 ttgccctggc aagtaattag ttgcaggggg taatattgcc caggcaaata taagtcaaat
     1141 aaatgaattg accgatgcca cgttttgcta aatcggttca agttttggtc aatgcgatgc
     1201 aaggttagct aaagagtgac actttatcct tgtttacccc ttatactttt cgctgataac
     1261 ccagatacac tggataacaa ccaccaatgt tagatttgtt taaagcaatt ggcctggggc
     1321 tggtggtgtt actgccgtta gctaacccat taacaactgt cgcgttattt cttggcctgg
     1381 caggcaacat gaacagtgcc gaacgtaatc gtcagtcgtt gatggcctcg gtgtacgtat
     1441 ttgccatcat gatggtggcg tattacgccg ggcaactggt gatggataca tttggcattt
     1501 cgattcccgg tctgcgaatt gcaggcggct taatcgtcgc gtttatcggt tttcggatgc
     1561 tctttccgca acagaaagcg attgattcac cggaggcgaa aagcaagtcg gaagagctgg
     1621 aagatgaacc cagtgccaat attgcctttg tgccgctagc aatgccaagt accgctggtc
     1681 cgggaaccat agcgatgatt attagctcgg cgtccacagt gcgtcagagt tcaaccttcg
     1741 ctgattgggt actgatggtt gcgccgccgc tgatcttttt cctggtggcg gttattttgt
     1801 ggggaagcct acgcagctcc ggcgcaatta tgcggctggt gggcaagggt ggcattgaag
     1861 cgatctcccg tctgatggga ttcctgctgg tatgtatggg tgtgcagttt attattaacg
     1921 gcatcctgga aatcattaaa acgaaccatt aaaaaaggcc cgaatgggcc tttcaactat
     1981 tgcgtctgtt cttcgagtgt cactggccag cggcgaaata taatgattga ccatattaac
     2041 gcggcaaaag caggcaccgc gcccacataa ccaatcatcg acattgacca gtgcaaactc
     2101 acctgattac ctaccaacgc acccgccccg attccaatat taaatatgcc ggagaatagc
     2161 gccatcgcga cgtcggtagc atctggtgcc agcgccagca ctttaacctg cataccaagc
     2221 ccgatgatca tcatcgcgat cccccagaaa atactcagca ccccgaggtg tatttcactg
     2281 ttcgccgcag gtagcagcag tgccagacac accagcaaca gcgcaatcgc cgtactcacc
     2341 aacgcagacg catactgatt acccagttta ccgaaaatca cgctgccaat aatgcccgca
     2401 ccaccgagta ataacagtaa tgccgtggca aagttggcgc tgaatcccgc aatgttttgc
     2461 acaaaaggct cgatatagct gtatgccgtg taatgggcgg tgacaaccac cacagttaac
     2521 aaataaatgc tcatcaatgc cgggcggcgg aacaatagcg ggaggctttt caatgaaccg
     2581 gaatgctcac tgggcagtaa gggaagtaac ttaatcaggc acaaaagggt gataagcgcc
     2641 ccaataccaa tcgcgaagaa ggtcattcgc caaccgaaat actgccccac aatgcgcccg
     2701 agaggtaaac ctaagaccat cgccagtgct gtaccggtgg caattaaact caaggcctgt
     2761 gcccgcttcc cggccggagc catacggatc gccagagacg ccgtaatcga ccagaaaatc
     2821 gcatgtgcaa aagccacacc aatgcgactg atcaccagaa cggtaaagct ccacgataaa
     2881 aacgacagta cgtggctggc aataaacacc acaaacaggc agatcagtaa tttgcgccgt
     2941 tcaacctgac tggtcattaa cataaaaggc aatgacatta gcgctactac ccatgcgtaa
     3001 atggtcaaca tgatgccgac ctgagcggtt tgcatgtgaa aactttgcgc aatgtcagag
     3061 agcaggccaa cagggacaaa ttcggtggtg ttgaagatga aggcggcgac tgccagcgta
     3121 acgacccgta gccacgccac tttgcgggaa acagtgtttg ttgtcataac agattatcgg
     3181 gtgagttgcg aaaaagtgat gaaatgatct taaaacggtt aatgatgtga atacaatgca
     3241 tttgtgatct ggatcgcgtt ttccgtttct ctgacgctga ttctgttccg cgtcagagag
     3301 tcggtaacat cacggtttaa tgacgttcag ggaggtctgg cgttttggcg gttgcgggta
     3361 taggtggtct gacaggggag cgaggcctgt ttttcaccag gtcttcgtga gtaacttttg
     3421 gcggcgtttc attttttaca aacagtttga gggtcctgcg cgccatatgc ttgataattt
     3481 tatcatcact taatgatgct ggcatcaaca cgtcattcag atcactttca ttgggattca
     3541 taaattggtg atagtgcaat aacatattgg cgaaaaataa aaaaagtcct gaaaatgagg
     3601 agattcttgt tctgctaaaa gggataaaaa gcagatgcag acttcgggta gtacatgttt
     3661 gttagaacct aatgaatcca tcaggctttg caataaatcc tcttttaatt cgccgtctgt
     3721 tatgtcgaga atggcggtga tcaagttagg atctttattg acgaaccatc tgtgaacctc
     3781 agagttactc cataatcggg ggagtatgac aaaattaccg cgagagataa aattcaggac
     3841 aagcaaatca aactggcgta agtaatctgc agcggtatgg tgatccggag gcaggggttc
     3901 aatatgtggt gtatgcgctt ttttgatggg gacgccaagg tggatcattg gaaattgttc
     3961 aataaaatca ttcagaaaca gaaagagcac acgctcgacg ccggtgtgaa atacgcgccc
     4021 catagtgaca ggctttgggt tgggagcgca aaaatattaa tttctccatc atggcgaaaa
     4081 ttatctaaat aaatagggct taaatttatt actacctgaa attcaatatt ttctttgtgt
     4141 cttccattct tgacgggata agtgagttta aactgaacct tttcattgta tagtgtgtcg
     4201 ttaccccgaa aagaagtctt ctgaatatat gataagttat caaggttgtt aaatgtcttt
     4261 tttgtggctg agttggtgtt taaagacgtg cgccactctt catcacatat tatggtactg
     4321 agtgcatcaa taaaattctt taaaacttct tttacctgag gtgcaatatt acgtacggga
     4381 aaatcatcag gaagagatat gtaattactg atgcttactg gcgtaaccat atttgcccca
     4441 tatagtcata agtcatcgga acatcactat atagggcatt tgagctgcaa gaactatcaa
     4501 aaatagctca ttggtaaccc tgttttgccg agtcaggcac atccagtagt tgaataaatg
     4561 cctcaagcgg acgcgttttc gcaccacgac gccagaccag ccaggttgtt aaccaacgcc
     4621 attgctcagc taacggccac gcttcaacct ggtgatgccc cggcatactt tccagcatag
     4681 agcgtggaat aagcgcaatg cctgctcctg cgaccacaca ggccaacatc ccgtgatacg
     4741 actccatctc gtgaatagtt cccggagcgg caccgtcagc atgaaaccag ctctcgaagt
     4801 ggcgacgata cgaacaattg gcgcggaagg cataaatgtt actgccgtta acctgactgg
     4861 cgcggattac tggcgcatga ccttgtggcg tgacgatcat cagctcctcg cggtataccg
     4921 gtatcccgtc aatggcagta tggttaatgg gcccatcaat aaatgccgca ttcagttttc
     4981 cctccagcac tccttccagc atagtgccgg aagggccggt ggaaagtgaa aactgaattt
     5041 tgggataacg atggttgaat tccgccagcg tggccggaat gcgcactgct gcggtacttt
     5101 ccagcgaacc aagagaaaat aaaccttgcg gctcatcgcc agcgacaacg ctccgcgctt
     5161 catccactaa cgcgagaatt tgttggctat agcgtaaaaa gttatgcccg gcaggagaga
     5221 gacgtaaacg ctgattctcg cgaataaaca gatctacccc cagttctgtt tccagctggc
     5281 gtagacgggt agtgagattc gacggcacgc gaagcactat tgctgctgcc tgggttatgc
     5341 tgccagcttc ggcaaccgcg ttgaacatct ccagttgggt cagatccata atattctcga
     5401 ttcgtgaata agtggcttaa tattattcat tttaaagcaa gagtaaatct gcgtatcttc
     5461 ataccatgac tcataaagga gataccccga tgaccattac tccggcaact catgcaattt
     5521 cgataaatcc tgccacgggt gaacaacttt ctgtgctgcc gtgggctggc gctaacgata
     5581 tcgaaaacgc acttcagctg gcggcagcag gctttcgcga ctggcgcgag acaaatatag
     5641 attatcgtgc tgaaaaactg cgtggtatcg gtaaggctct gcgcgcccgt agcgaagaaa
     5701 tggcgcaaat gatcacccgt gaaatgggca aaccaatcaa tcaggcgcgc gctgaagtgg
     5761 cgaaatcggc gaatttgtgt gactggtatg cagaacatgg tccggcaatg ctgaaggcgg
     5821 aacctacgct ggtggaaaat cagcaggcag ttattgagta tcgaccgttg gggacgattc
     5881 tggcgattat gccgtggaac tttccgttat ggcaggtgat gcgtggcgcg gttcccatca
     5941 ttcttgcagg taacggctac ttacttaaac atgcgccgaa tgtgatgggc tgtgctcagc
     6001 tcattgccca ggtgtttaaa gatgcgggaa tcccgcaagg cgtatatggc tggctgaatg
     6061 ccgacaacga cggtgtcagt caaatgatta aagattcgcg cattgctgct gtcacggtga
     6121 ccggaagtgt tcgtgcggga gcggctattg gcgcacaggc tggagcggca ctgaaaaaat
     6181 gcgtactgga actgggcggt tcggatccat ttattgtgct taacgatgcc gatctggaac
     6241 tggcggttaa agcggcggta gccggacgtt atcagaatac cggacaggtt tgtgcagcgg
     6301 caaaacgctt tattatcgaa gagggaattg cttctgcatt taccgaacgt tttgtggcag
     6361 ctgcggcagc cttgaaaatg ggcgatcccc gtgatgaaga gaacgctctc ggaccaatgg
     6421 ctcgttttga tttacgtgat gagctgcatc atcaggtgga gaaaaccctg gcgcagggtg
     6481 cgcgtttgtt actgggcggg gaaaagatgg ctggggcagg taactactat ccgccaacgg
     6541 ttctggcgaa tgttacccca gaaatgaccg cgtttcggga agaaatgttt ggccctgttg
     6601 cggcaatcac cgttgcgaaa gatgcagaac atgcgctgga actggctaat gatagtgagt
     6661 tcggcctttc agcgaccatt tttaccaccg acgaaacaca ggccagacag atggcggcac
     6721 gtctggaatg cggtggggtg tttatcaatg gttattgtgc cagcgacgcg cgagtggcct
     6781 ttggtggcgt gaaaaagagt ggctttggtc gtgagctttc ccatttcggc ttacacgaat
     6841 tctgtaatat ccagacggtg tggaaagacc ggatctgacg cgacatattc agctctgata
     6901 tactcgcagg tcttttcaga cctgcggtcc aggagtagaa agtggcagtc gccatggata
     6961 atgcaatttt agaaaacatc ttgcggcaag tgcggccgct cattggtcag ggtaaagtcg
     7021 cggattatat tccggcgctg gctacagtag acggttcccg attgggcatt gctatctgta
     7081 ccgttgacgg acagcttttt caggccggag acgcgcaaga acgtttttcc attcagtcta
     7141 tttccaaagt gctgagtctc gttgtcgcca tgcgtcatta ctccgaagag gaaatctggc
     7201 aacgcgtcgg caaagatccg tctggatcac cgttcaattc tttagtgcaa ctggaaatgg
     7261 agcagggtat tccgcgtaat ccgtttatta atgctggtgc gctggtggtc tgcgatatgt
     7321 tgcaagggcg attaagcgca ccacggcaac gtatgctgga agtcgtgcgc ggcttaagcg
     7381 gtgtgtctga tatttcatac gatacggtgg tagcgcgttc cgaatttgaa cattccgcgc
     7441 gaaatgcggc tatcgcctgg ctgatgaagt cgtttggcaa tttccatcat gacgtgacaa
     7501 ccgttctgca aaactacttt cattactgcg ctctgaaaat gagctgtgta gagctggccc
     7561 ggacgtttgt ctttctggct aatcagggga aagctattca tattgatgaa cctgtggtga
     7621 cgccaatgca ggcgcggcaa attaacgcgc tgatggcgac cagtggtatg taccagaacg
     7681 cgggggagtt tgcctggcgg gtggggctac cggcgaaatc tggcgttggt ggcggtattg
     7741 tggcgattgt tccgcatgaa atggccatcg ctgtctggag tccggaactg gatgatgcag
     7801 gtaactcgct tgcgggtatc gccgtccttg aacaattgac gaaacagtta gggcgttcgg
     7861 tttattaatg cagtctctcg atccactctt cgcgcgttta tcccgttcaa aatttcgctc
     7921 tcgctttcgt ctgggcatga aagagcgtca gtattgcctg gagaaaggcg cgccagtcat
     7981 cgaacaacat gcggcggatt ttgtcgctaa acgtcttgct ccggcattac cggctaatga
     8041 cggtaagcaa acacccatgc gcgggcatcc ggtgtttatc gctcagcacg ccaccgcgac
     8101 ctgctgtcgc ggttgtctgg ctaagtggca taacattccg cagggtgttt cgttaagcga
     8161 agaacaacaa cgttatatcg tggcggtaat ctatcactgg ctggttgtac agatgaatca
     8221 gccatgagaa ttgcggaaaa cgataaaata gcattcccag ggtaccttta tttgccgccg
     8281 ctgttagcga acatgctatc ctttatgaga atttacttat tacgttgaga taattgccac
     8341 ccgcaattgt atggacagat aattaatgca tgtacacccc atttcaactt tccgtttgtt
     8401 ccaggaaggt catctgctac gtaatagcat cgctattttt gcgctaacca cgctgttcta
     8461 ttttattgtt gcagagttac ggctggttca cgaactttct cttttctggc cgctgaatgg
     8521 cgtaatggcg ggggtgtttg cccgctatgt ctggcttaat cgactgcatt actatgcgat
     8581 cagttatgtg gcgatgctgg tttatgatgc cataaccacc gaatggggac tggtttcact
     8641 ggttatcaat ttctccaata tgatgtttat tgttaccgtc gccttactgg tcgtgcggga
     8701 taagcgtctg gggaaaaata agtatgagcc agtaagtgcc ttacggctat ttaattactg
     8761 tctgattgcc gcattattat gcgctattgt cggggcgatt ggttcggtca gtattgatag
     8821 tctggatttc tggcctttgc ttgcggactg gttcagtgag caattctcaa cgggcgtgtt
     8881 gatcgtgcct tgtatgctga cgttggctat tcctggagtg ctgccgcgct ttaaagcaga
     8941 acagatgatg cccgccatcg cgcttattgt gtcggttatt gcctcggtag tcattggcgg
     9001 agcggggagt ctggcgttcc cgctgcctgc attaatctgg tgtgcagtgc gctatacgcc
     9061 gcaggtaaca tgtctgttga cctttgtcac cggtgcggtg gaaatcgtac tggtggcaaa
     9121 ttcggtgatt gatatctcgg tcggttcgcc gttctccatt ccggaaatgt tctccgcacg
     9181 tctcggtatt gccacgatgg cgatatgccc aattatggtt tcttttagcg tggcagcgat
     9241 caattcgcta atgaagcaag ttgcgctgcg agccgacttt gattttctga ctcaggttta
     9301 ctcacggtcc ggtctttatg aggcgctgaa aagtccatcg ctgaaacaga cacaacatct
     9361 gacggtcatg ctgcttgata tcgactattt caaaagcatt aacgataact atggacatga
     9421 atgtggcgat aaagtgttaa gcgtgtttgc ccggcatatt cagaagattg tcggtgataa
     9481 ggggctggtg gcgcgcatgg gcggcgaaga atttgctgtt gcagtgccgt cggtgaatcc
     9541 tgtcgatggt ctgctaatgg cggaaaaaat ccgtaaaggc gttgaactgc aaccattcac
     9601 ctggcaacaa aaaacgcttt atctcacggt aagtattggc gtcggtagtg gtcgcgcatc
     9661 gtaccgaacg ctgaccgatg attttaataa attgatggtc gaagccgata cgtgtctgta
     9721 tcgctcgaag aaagatgggc gcaaccgtac cagcactatg cgttacggtg aggaagttgt
     9781 ctgacatctt tattcattcc gcgcgatttg aatgcaatgt gttctaccac tttatgatcc
     9841 aggaaaaggc gtatttcctc gattaaacca tgaaccgcgc cacacgtttc tcataaaact
     9901 gctcattaat catcaggagt tgatcaaaac aggggttcgg cgtattaaac tttgtcaacc
     9961 tgtcatacca attcaaacgg gttgtgtgac taatcagaag ggaacccatt gtgaaaacac
    10021 taaatcgtcg cgatattccc ggtgcacagt atccagaacg tatcattcag tttggtgaag
    10081 gtaacttcct gcgcgccttt gttgactggc aaatcgatct cctgaatgag cacaccgatc
    10141 tgaattctgg cgtggtcgtt gttcgtccga ttgaaacttc attcccgccg tcactgagca
    10201 cgcaggatgg tctgtacacc accattatcc gtggcctgaa tgagaa
//
LOCUS       DADMHM010000140        10205 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.142, whole genome shotgun sequence.
ACCESSION   DADMHM010000140 DADMHM010000000
VERSION     DADMHM010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10205)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10205)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10205
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.142"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(265..1296)
                     /gene="rsmC"
                     /locus_tag="JN125_003017"
     CDS             complement(265..1296)
                     /gene="rsmC"
                     /locus_tag="JN125_003017"
                     /EC_number="2.1.1.172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(1207)-N(2))-methyltransferase
                     RsmC"
                     /protein_id="HAY8872712.1"
                     /translation="MSAFTPASEVLLRHSDDFEQSRILFAGDLQDDLPARLDTAASRA
                     HTQQFHHGQVLSRQMGDNARFSLVATVDDVADCDTLIYYWPKNKPEAQFQLMNLLSLL
                     PVGTDIFVVGENRSGVRSAEQMLADYAPLNKVDSARRCGLYFGRLEKQPVFDADKFWG
                     EYSVDGLTVKTLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHS
                     PKIRLTLCDVSAPAVEASRATLAANYVEGEVFASNVFSEVKGRFDMIISNPPFHDGMQ
                     TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGFHEVIAQTGRFKVYRA
                     IMTRQAKKG"
     gene            1399..1812
                     /gene="holD"
                     /locus_tag="JN125_003018"
     CDS             1399..1812
                     /gene="holD"
                     /locus_tag="JN125_003018"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit psi"
                     /protein_id="HAY8872713.1"
                     /translation="MTSRRDWQLQQLGITQWSLRRPGALQGEIAIAIPAHVRLVMVAN
                     DLPALTDPLVSDVLRALTVSPDQVLQLTPEKIAMLPQGSRCNSWRLGTDEPLSLEGAQ
                     VASPALTELRANPTARAALWQQICTYEHDFFPRND"
     gene            1781..2227
                     /gene="rimI"
                     /locus_tag="JN125_003019"
     CDS             1781..2227
                     /gene="rimI"
                     /locus_tag="JN125_003019"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HAY8872714.1"
                     /translation="MNTISSLETTDLPAAYHIEQRAHAFPWSEKTFASNQGERYLNFQ
                     LTQNGKMAAFAITQVVLDEATLFNIVVDPDYQRQGLGRVLLKHLIDELEKRGVATLWL
                     EVRASNAAAIALYESLGFNEATIRRNYYPTTDGREDAIIMALPISM"
     gene            2242..2919
                     /gene="yjjG"
                     /locus_tag="JN125_003020"
     CDS             2242..2919
                     /gene="yjjG"
                     /locus_tag="JN125_003020"
                     /EC_number="3.1.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine 5'-nucleotidase"
                     /protein_id="HAY8872715.1"
                     /translation="MKWDWIFFDADETLFTFDSFTGLQRMFLDYSVTFTAEDFQDYQA
                     VNKPLWVDYQNGAITSLQLQHGRFESWAERLKVEAGLLNDAFINAMAEICTPLPGAVS
                     LLNAIRGNAKIGIITNGFSALQQVRLERTGLRDYFDLLVISEEVGIAKPNKKIFDYAL
                     ELAGNPDRSRVLMVGDTAESDILGGINAGLATCWLNAHHREQPEGIAPTWTVSSLHEL
                     EQLLCKH"
     gene            3010..4599
                     /gene="prfC"
                     /locus_tag="JN125_003021"
     CDS             3010..4599
                     /gene="prfC"
                     /locus_tag="JN125_003021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HAY8872716.1"
                     /translation="MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAG
                     TVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRT
                     LTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVEN
                     ELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAA
                     VGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLDGLVEWA
                     PAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQV
                     RTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPN
                     FAPELFRRIRLKDPLKQKQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVV
                     SRLKSEYNVEAVYESVNVATARWVECADAKKFEEFKRKNESQLALDGGDNLAYIATSM
                     VNLRLAQERYPDVQFHQTREH"
     gene            4992..5597
                     /gene="osmY"
                     /locus_tag="JN125_003022"
     CDS             4992..5597
                     /gene="osmY"
                     /locus_tag="JN125_003022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone OsmY"
                     /protein_id="HAY8872717.1"
                     /translation="MTMTRLKISKTLRAVMLTSAVATGSAYAENNAQTTNESAGQKVD
                     SSMNKVGNFMDDSAITAKVKAALVDHDNIKSTDISVKTEQKVVTLSGFVESQAQAEEA
                     VKVAKGVEGVTSVSDKLHVRDAKEGSVKGYAGDTATTSEIKAKLLADDIVPSRHVKVE
                     TTDGVVQLSGTVDSQAQSDRAESIAKAVDGVKSVKNDLKTK"
     gene            5724..5885
                     /locus_tag="JN125_003023"
     CDS             5724..5885
                     /locus_tag="JN125_003023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002887716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1328 domain-containing protein"
                     /protein_id="HAY8872718.1"
                     /translation="MFRWGIIFLVIALIAAALGFGGLAGTAAGAAKIVFVVGIILFLV
                     SLFMGRKRP"
     gene            6007..7080
                     /locus_tag="JN125_003024"
     CDS             6007..7080
                     /locus_tag="JN125_003024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="patatin family protein"
                     /protein_id="HAY8872719.1"
                     /translation="MGQRIPVTLGNIAPLSLRPFQPGRIALVCEGGGQRGIFTAGVLD
                     EFMRAQFNPFDLYLGTSAGAQNLSAFICNQPGYARKVIMRYTTKREFFDPLRFVRGGN
                     LIDLDWLVEATASQMPLQMDTAARLFDSGKSFYMCACRQDDYAPNYFLPTKQNWLDVI
                     RASSAIPGFYRSGVSLEGINYLDGGISDAIPVKEAARQGAKTLVVIRTVPSQMYYTPQ
                     WFKRMERWLGDSSLQPLVNLVQHHETSYRDIQQFIEKPPGKLRIFEIYPPKPLHSIAL
                     GSRIPALREDYKLGRLCGRYFLATVGKLLTEKAPLTRHLVPVVTPESIVIPPAPVAND
                     TLVAEVIDAPQANDPTFNNEDLA"
     gene            7077..7859
                     /locus_tag="JN125_003025"
     CDS             7077..7859
                     /locus_tag="JN125_003025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313363.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HAY8872720.1"
                     /translation="MICRFIDTHCHFDFPPFSGDEEASLQRAAQAGVGKIIVPATEAE
                     NFARVQALAEKYQPLYAALGLHPGMLEKHSDVSLEQLQQALERRPAKVVAVGEVGLDL
                     FGDDPQLERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDLSRTGVVHGFS
                     GSLQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDAPDMPLNGFQG
                     QPNRPEQAVRVFDVLCELRPEPEDEIAEVLLNNTYALFSVSG"
     gene            complement(8073..8936)
                     /gene="yjjW"
                     /locus_tag="JN125_003026"
     CDS             complement(8073..8936)
                     /gene="yjjW"
                     /locus_tag="JN125_003026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjjW family glycine radical enzyme activase"
                     /protein_id="HAY8872721.1"
                     /translation="MNSRCALVSKIIPFSCVDGPGSRLALFLQGCNLRCKNCHNPWTM
                     GRCNDCGECVPQCPHQALQIVDGKVLWNAVVCEQCDTCLKMCPQHATPMAQSMSVDEV
                     LSHVRKAVLFIEGITVSGGEATTQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETG
                     WEKLLPVCDGAMLDLKAWGSECHQHLTGRDNQQIKRSICLLAERGKLAELRLLVIPDQ
                     VDYLHHIDELATFIKRLGDVPVRLNAFHTHGVYGEAQSWASATPEDVEPLADALKVRG
                     VSRLIFPALYL"
     gene            complement(8908..>10205)
                     /locus_tag="JN125_003027"
     CDS             complement(8908..>10205)
                     /locus_tag="JN125_003027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YjjI family glycine radical enzyme"
                     /protein_id="HAY8872722.1"
                     /translation="WLELEGAKDLDDALSLLTILYHHVPSVTSMPVYLGQLDALLQPC
                     VRILTQDEIDVRIKRFWRYLDRTLPGAFMHANIGPPDSPITRAILRADAELKQVSPNL
                     TFIYDPEITPDDLLLEVAKNICECSKPHIANGPVHDKIFTKGGYGIVSCYNSLPLAGG
                     GSTLVRLNLKAIAERSESLDDFFTRTLPHYCQQQIAIIDARCEFLYQQSHFFENSFLV
                     KEGLINPERFVPMFGMYGLAEAVNLLCEKEGIAARYGKEAAVNEVGYRISAQLAEFVA
                     NTPVKYGWQKRAMLHAQSGISSDIGTTPGARLPYGDEPDPIIHLQTVAPHHAYYYSGI
                     SDILTLDETIKRNPQALVQLCLGAFKAGMREFTANVSGNDLVRVTGYMVRLSDLEKYR
                     AEGSRTNTTWLGEEATRNTRILERQPRVISHEQQMRFSQ"
BASE COUNT         2409 a         2670 c         2749 g         2377 t
ORIGIN      
        1 ccatcaattc ttaaaaagaa ttgctaccac ggaggcgcat tctagtggtt ttcagctttt
       61 cgtcaatagt taattatcgc cggaggtgta attgctggaa aaatgtccat caggaaacta
      121 gcgtgcaggt ttggtaggca tgcgggggca gatgccagat gcgacgctgg cgcgtcttat
      181 ctggcctacg aagggctaac gtgcaggttt tgtaggtcgg ataaggcgtt tacgccgcat
      241 ccggcaaggc ttgcggcggg atacttaacc ttttttcgcc tggcgggtca taatggcgcg
      301 atataccttg aaacgcccgg tttgcgcaat cacttcatgg aagccaaatg tctcatccag
      361 cacgtccgga taaggcagga aggcgttcgc tacaattcgc agctcgccgc cactattaag
      421 atgacgcacc gcgccgcgaa tcagcgtttg cgccgcatcc aggctggttt gcatcccatc
      481 gtggaacggc gggttggaga tgatcatatc aaaacgacct ttcacctcgg aaaagacgtt
      541 gctggcaaag acttcacctt caacatagtt ggccgcaagt gttgcgcggc tggcttctac
      601 cgctggcgca gagacatcgc acaaggtgag acgaattttc ggcgaatggc gcgcaaaggc
      661 aactgaaagc acccccgcgc cacagccgac atccagcact ttacctttcg tgtgcggagt
      721 taacgtcgag agcagcaact ggctaccgac atccagaccg tcgcggctaa acacgccagg
      781 cagcgttttg accgtcaggc catcgacgct gtattcgccc cagaatttat cggcatcaaa
      841 taccggctgt ttttccagac gaccaaaata gaggccacag cgacgagcgc tgtcgacttt
      901 attcaacggc gcataatctg ccagcatctg ctcggcgctg cgcacgccgc tgcggttctc
      961 gccaacgaca aaaatatctg tccccactgg cagcagagaa agtaaattca tcaactggaa
     1021 ctgggcttcc ggtttgttct tcggccagta gtaaatcagc gtatcgcaat ctgcgacgtc
     1081 atccaccgtg gcgaccagac tgaaacgggc gttatccccc atctggcggc ttaatacctg
     1141 cccgtggtgg aattgctggg tatgagcacg gctggccgcg gtatctaaac gcgcgggcag
     1201 gtcatcctgt aagtctccgg caaacagaat acggctttgt tcgaaatcat cactgtgacg
     1261 cagcaagact tcacttgccg gggtaaatgc agacatggaa tgctcctcaa ttgatactgg
     1321 cggcgattat agccatatgt tggcgcggta tcgacgaatt tgctatattt gcgcccctga
     1381 caacaggagc gattcgctat gacatcccga cgagactggc agttacagca actgggcatt
     1441 acccagtggt cgctgcgtcg ccctggcgcg ttgcaggggg agattgccat tgcgatcccg
     1501 gcacacgtcc gtctggtgat ggtggcaaac gatcttcccg ccctgaccga tcctttagtg
     1561 agcgatgttc tgcgcgcatt aaccgtcagc cccgatcaag tgctgcaact gacgccagaa
     1621 aaaatcgcga tgctgccgca aggcagtcgc tgcaacagct ggcggttggg tactgacgaa
     1681 ccgctatcac tggaaggcgc tcaggtggca tcaccggcgc tcaccgaatt acgggcaaac
     1741 ccaacggcac gcgccgcgtt atggcaacag atttgcacat atgaacacga tttcttccct
     1801 cgaaacgact gatttaccag cagcttacca cattgaacaa cgcgcccacg cctttccgtg
     1861 gagtgaaaaa acctttgcca gcaaccaggg cgagcgttat ctcaactttc agttaacgca
     1921 aaacggcaaa atggcggcgt ttgcgattac gcaagtggtg ctggatgaag ctacattgtt
     1981 caatattgtg gtcgatcctg actatcagcg tcagggattg ggaagggtgc tgctgaaaca
     2041 tctgatcgac gaactggaaa aacgcggcgt ggcgacacta tggctggaag tccgtgcttc
     2101 aaacgctgcc gccattgccc tgtacgaaag tttaggcttt aacgaggcga cgattcgccg
     2161 caattactac cccaccacgg acggtcgcga agacgccatc atcatggcgt tgccaatcag
     2221 tatgtaagac aaggtggaat aatgaagtgg gattggattt tctttgatgc cgatgaaacg
     2281 ctgtttacct ttgactcatt caccggcctg cagcggatgt ttcttgatta cagcgtcacc
     2341 tttaccgctg aagattttca ggactatcag gccgttaaca agccactgtg ggtggattat
     2401 caaaacggcg cgatcacttc attacagctt cagcacgggc gtttcgagag ctgggccgaa
     2461 cggctgaaag ttgaagcagg cttgcttaac gatgccttta ttaatgcgat ggcggaaatc
     2521 tgcacgccgc tgccgggcgc ggtttctctg cttaacgcca ttcgtggcaa cgctaaaatc
     2581 ggcatcatca ccaacggttt tagcgccttg cagcaagtgc gtctggaacg gacgggcctg
     2641 cgtgattact ttgatttgct ggtgatttcc gaagaagttg gcattgccaa accgaataag
     2701 aaaattttcg attatgcgct ggaactggcg ggcaatcctg accgttcacg cgtgctgatg
     2761 gttggcgaca ctgccgagtc cgatattctc ggtggcatca acgccgggct tgcgacttgc
     2821 tggctgaatg cgcaccatcg cgagcaacca gaaggcatcg cgcccacctg gaccgtttca
     2881 tcgttgcacg aactggagca gctcctgtgt aaacactgat tgcctccccc ccgttgatgg
     2941 gtaaaatagc cgcaattttt cgttttcaac aagcgcggcg cgatgccgct tactcaagaa
     3001 gaaagaatta tgacgttgtc tccttatttg caagaggtgg cgaagcgccg cacttttgcc
     3061 attatttctc acccggacgc cggtaaaact accatcaccg agaaggtgct gctgttcgga
     3121 caggccattc agaccgctgg tacagtaaaa ggccgtggtt ccaaccagca cgctaagtcg
     3181 gactggatgg agatggaaaa gcagcgtggg atctccatta ctacgtctgt gatgcagttt
     3241 ccgtatcacg attgcctggt taacctgcta gacaccccgg ggcacgaaga cttctcggaa
     3301 gatacctatc gtaccctgac agcggtggac tgctgcctga tggttatcga cgctgcaaaa
     3361 ggtgttgaag atcgtacccg taagctgatg gaagttaccc gtctgcgcga cacgccgatc
     3421 ctcaccttta tgaacaaact tgaccgtgat atccgcgacc cgatggaact gctcgatgaa
     3481 gttgagaacg agctgaaaat cggctgcgca ccgatcacct ggccgattgg ctgcggcaag
     3541 ctgtttaaag gcgtttacca cctttataaa gacgaaacct atctttatca gagcggtaaa
     3601 ggccacacga ttcaggaagt ccgtattgtt aaagggctga ataacccgga tctcgacgct
     3661 gcggttggtg aagatctggc acagcagcta cgtgacgaac tggaactggt gaaaggcgcg
     3721 tctaacgagt tcgacaaaga actgttcctt gcgggcgaaa tcactccggt attcttcggt
     3781 actgcgctgg gtaacttcgg cgttgatcat atgctggatg gcctggtgga gtgggcccct
     3841 gcgccgatgc cgcgtcagac tgatacccgt accgtagagg cgagcgaaga caaatttacc
     3901 ggcttcgtat ttaaaattca ggccaatatg gacccgaaac atcgcgaccg cgtggcgttt
     3961 atgcgcgtag tatccggtaa atatgaaaaa ggcatgaagc tgcgccaggt gcgtactgcg
     4021 aaagatgtgg ttatctccga cgcgctgacc tttatggcgg gcgaccgttc gcacgttgaa
     4081 gaagcgtatc cgggtgatat cctcggcctg cacaaccacg gcactattca gatcggcgac
     4141 acctttaccc agggggagat gatgaagttc accggtattc cgaacttcgc accagaactg
     4201 ttccgtcgta tccgcctgaa agatccgctg aagcaaaaac agctgctcaa agggctggta
     4261 cagctttccg aagagggcgc ggtgcaggtg ttccgtccga tctccaacaa cgatttgatc
     4321 gttggtgctg ttggtgtgct gcagtttgat gtggtggtat cgcgcctgaa gagcgaatac
     4381 aacgttgaag cagtatatga atcagtcaac gttgccactg cccgctgggt agaatgtgcg
     4441 gacgcgaaga aattcgaaga gttcaagcgt aagaacgaaa gccaactggc gcttgatggc
     4501 ggcgataacc tcgcttacat cgctaccagc atggtcaacc tgcgcctggc gcaggaacgt
     4561 tatcccgacg ttcagttcca ccagacccgc gagcattaat tcttgcctcc agggcgcggt
     4621 agccgctgcg ccctgtcaat ttcccttcct tattagccgc ttacggaatg ttcttaaaac
     4681 attcactttt gcttatgttt tcgctgatat tacgagcggt ttcaaaattg tgatctatat
     4741 ttaacaaagt aatgacattt ctgacggcgt taaataccgt tcaatgcgta gatatcagta
     4801 tctaaagccg tcgattgtca ttctaccgat attaataact gattcagagg ctgtaatggt
     4861 cgttattcat cacccatcgc ttttgtgatg gcgaccattg acttctgtag agggtgaagt
     4921 ctctccctat tcagcaatgc aacctcgtgt tgccaggctc aaattacgag caaacataca
     4981 ggaataaatc gatgactatg acaagactga agatttcgaa aactctgcgg gctgtaatgt
     5041 tgacctctgc cgtcgcgacc ggctctgcct acgcggaaaa caacgcacag actaccaatg
     5101 aaagcgcagg gcaaaaagtc gatagctcta tgaataaagt cggtaatttc atggatgaca
     5161 gcgccatcac cgcgaaagtg aaggcggcgc tggtggatca tgacaacatc aagagcaccg
     5221 atatctctgt caaaaccgag caaaaagtcg tgaccctgag cggtttcgtt gaaagccagg
     5281 ctcaggccga agaggcagtg aaagtggcga aaggcgttga aggggtgacc tctgtcagcg
     5341 acaaactgca cgttcgcgac gctaaagaag gctcggtgaa gggctacgcg ggtgacaccg
     5401 ccaccaccag tgaaatcaaa gccaaactgc tggcggacga tatcgtccct tcccgtcatg
     5461 tgaaagttga aaccaccgac ggcgtggttc agctctccgg taccgtagat tctcaggcac
     5521 aaagtgaccg tgctgaaagt atcgccaaag cggtagatgg tgtgaaaagc gttaaaaatg
     5581 atctgaaaac taagtaattc gtcgtaattc gtcctcccga actttgtcgg gaggcgcgat
     5641 gtgcaccaca ctaaaaatat cgcattgagt gattttcacg ctcatatcaa gcggtgacat
     5701 taactatggt aaaggagacg cttatgtttc gttggggcat catatttctg gttatcgcgt
     5761 taatcgccgc cgcacttggg tttggtggtt tggccggtac cgctgcaggc gcagctaaaa
     5821 ttgtctttgt cgtcgggatt attctgttcc tggtgagttt gttcatgggc cgaaaacgac
     5881 cctagatttc agaccattaa gaaaatttta tccaaagcca gtccagcgga ctggcttttg
     5941 cggttttagc gaataataaa ttgcgttact ttgtcattct ttcacaacaa aaacaggaag
     6001 gcagaggtgg ggcagcgaat acctgtaacg cttggtaata ttgcgccgtt gtcgctaagg
     6061 ccgttccagc ctggacgaat agctctggtg tgcgaaggcg gcggacagcg tggaattttc
     6121 acggctggcg tgctggatga gtttatgcgc gcgcagttta atcctttcga tctttatctc
     6181 ggcacatctg ccggggcgca gaacctctcg gcgtttatct gcaatcagcc cggttacgcg
     6241 cgcaaagtca tcatgcgcta taccacaaaa cgcgaatttt tcgatccatt gcgctttgtc
     6301 cgtggaggaa atcttatcga tctcgactgg ctggtggagg ccaccgcaag ccagatgccg
     6361 ttgcaaatgg ataccgccgc gcggttgttt gacagcggca aatcgtttta tatgtgcgcc
     6421 tgtcgtcagg atgactacgc gcctaattac tttttaccaa ccaaacaaaa ctggctggat
     6481 gtgattcgcg cctccagtgc gatacctggc ttttatcgta gcggagtgtc gctggaaggc
     6541 attaactacc tggatggcgg gatcagtgat gcgattccgg ttaaagaggc ggcaaggcag
     6601 ggcgctaaaa cgttggtcgt cattcgcact gtgccgtcac aaatgtacta cacgccgcag
     6661 tggttcaaac gcatggaacg ctggctgggt gacagtagcc tgcagccgct ggtcaatctg
     6721 gtgcagcatc atgaaaccag ctatcgtgac attcagcaat ttattgagaa accaccgggc
     6781 aagctgcgga tattcgaaat ttatccgccg aagccattac atagtatcgc gcttggcagt
     6841 cggattccgg cgctgcgtga agactataaa cttgggcgtt tatgcggtcg ttatttcctc
     6901 gccacggttg gcaagctatt aactgaaaaa gcgccgctta cccgccatct ggtgccagtg
     6961 gtgacgccgg aatcgatcgt tattccgcct gcgccagtcg ccaacgatac gctggttgcc
     7021 gaagtgattg acgctccgca ggcgaacgac ccgacattta acaatgagga tctggcttga
     7081 tttgccgttt tatcgacacc cactgccatt ttgatttccc gccgtttagt ggcgatgaag
     7141 aggccagcct gcaacgcgcg gcacaagcgg gcgtaggcaa gatcattgtt ccggcgacag
     7201 aggcggaaaa ttttgcccgt gtgcaggcgt tagcggaaaa atatcaaccg ctgtatgccg
     7261 cattgggctt gcatccaggt atgttggaaa aacatagcga tgtgtctctt gagcagctac
     7321 agcaggcgct ggaaaggcgt ccggcgaagg tggtggcagt gggggaggtc ggtctggatc
     7381 tcttcggcga cgatccgcaa cttgagaggc agcagtggtt actcgacgaa cagctgaaac
     7441 tggcgaaacg ctacgatctg ccggtgatcc tgcattcacg gcgcacacac gacaaactgg
     7501 cgatgcatct taaacgccac gatttatcgc gcactggcgt ggttcacggt ttttccggca
     7561 gcctgcaaca ggccgagcgg tttgtacagc tgggctacaa aatcggcgta ggcggtacta
     7621 tcacctatcc acgcgccagt aaaacccgcg atgtcatcgc aaaattaccg ctggcatcgt
     7681 tgttgctgga aaccgacgcg ccggatatgc cgctcaacgg ctttcagggg cagcctaacc
     7741 gaccggaaca ggctgtgcgg gtgtttgacg tgctttgcga gttgcgcccg gaaccagaag
     7801 atgagattgc cgaagtgttg cttaataata cgtatgcgtt gtttagcgtt agtgggtagt
     7861 ttacccttcg taggcagcat ccggcagtcg gcgcataatg cctgatgcga ctcttgtcgc
     7921 gtcttatcat gcctacaggt ttgtgccgaa ccgtaggccg gataaggcgt tcacgccgca
     7981 tccggcagtt ggcgcacaat gcctgatgcg acgcttgtcg cgtcttatca tgcctacaag
     8041 tctgtgccga accgtaggcc gtatctggca tgtcacaaat agagcgccgg aaatatcaac
     8101 cggctcaccc cgcgcacctt taacgcatca gccaacggct caacgtcttc cggcgtggcg
     8161 ctcgcccagc tttgcgcctc gccatacacg ccgtgggtat gaaacgcatt caggcgaacc
     8221 ggaacatcgc caagtctctt gataaacgtc gccagctcat cgatgtgatg caaataatcc
     8281 acctggtctg gaattaccag caaacgcagt tccgccagct tgccgcgctc tgcaagcaaa
     8341 cagatgctgc gcttaatctg ctgattatcg cgtccggtta agtgttgatg acattcgctc
     8401 ccccacgctt tgagatcgag cattgcgccg tcacacaccg ggagtaattt ttcccagccg
     8461 gtttcgctca acatgccgtt actgtccacc aggcaggtga ggtggcgcag ttgcggatcg
     8521 tttttgatag cagtaaacag cgccactaca aacggcagtt gggtcgtggc ttcgccgccg
     8581 cttaccgtta tcccttcaat aaacagcacc gctttgcgga catggctaag cacttcgtcc
     8641 acgctcatgg attgcgccat tggcgtggca tgttgcggac acatcttcag gcaggtatca
     8701 cactgctcgc agaccacagc gttccacagc actttgccgt caacaatctg caacgcctga
     8761 tgcggacact gtggcacgca ctctccgcaa tcattgcagc gtcccatcgt ccacggattg
     8821 tgacagtttt tgcagcgcag attgcagccc tgcagaaaca gagccagacg actgcctggc
     8881 ccgtcaacgc aggagaaggg gataatctta ctgactaaag cgcatctgct gttcatggct
     8941 tatcacgcgc ggctggcgtt ccagaatacg agtgttgcgt gtggcttctt cgcccagcca
     9001 ggtggtgttg gtgcgtgaac cttcggcgcg atatttttct aaatccgaca aacgcaccat
     9061 ataaccggta acgcgaacca gatcgttacc gctgacattg gcggtaaatt cacgcattcc
     9121 ggctttaaag gcaccgaggc aaagctgtac cagcgcctgc ggattacgtt tgatggtttc
     9181 gtcgagcgtc agaatgtcgc tgatgccgga ataataataa gcatgatgcg gggcgacagt
     9241 ttgcagatgg atgatcggat ctggctcatc gccatacggc aaacgcgcgc ccggcgtggt
     9301 gccgatatcg gaactgatcc ccgactgtgc gtgtaacatg gcgcgttttt gccagccata
     9361 tttcacgggg gtattggcga caaactccgc cagttgcgcg ctgatgcgat aacccacttc
     9421 atttacggcg gcttctttac cgtagcgcgc ggcaatccct tctttctcac acagcaagtt
     9481 aaccgcttcc gccagcccat acatgccaaa cattggcaca aaacgttcag ggttaatcag
     9541 cccttctttc accaggaagc tattctcaaa gaagtgtgat tgttgataga ggaattcaca
     9601 ccgcgcatcg atgatggcga tctgctgctg gcagtagtgc ggtagagtgc gcgtaaagaa
     9661 gtcatccagc gattcgctgc gctcggcaat ggctttcagg ttaaggcgta ccagcgtgct
     9721 gccaccaccc gccagcggca gtgagttgta acagctcaca atcccgtagc ccccttttgt
     9781 gaaaatttta tcatgcaccg gaccgttggc gatgtgcggt ttgctacatt cacagatgtt
     9841 cttcgccact tccagcagca ggtcatcagg ggtgatttca ggatcgtaga taaaggtcag
     9901 gttcggtgaa acctgcttca actctgcgtc tgcacgtaag atcgcgcggg taatgggcga
     9961 atcaggcggg ccgatattgg cgtgcataaa ggcgcctggc agggttctgt cgaggtaacg
    10021 ccagaaacgt tttattcgaa catcgatctc gtcttgtgtt agaattctaa cacacggttg
    10081 caacaacgca tccagttgcc ccaggtagac cggcatcgat gtgaccgacg gtacgtggtg
    10141 gtaaagaatg gtcagcagag agagtgcgtc atcaagatct ttcgcgcctt ccagctccag
    10201 ccatt
//
LOCUS       DADMHM010000141        10126 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.143, whole genome shotgun sequence.
ACCESSION   DADMHM010000141 DADMHM010000000
VERSION     DADMHM010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10126)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10126)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10126
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.143"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(1..1377)
                     /locus_tag="JN125_003028"
                     /pseudo
     CDS             complement(1..1377)
                     /locus_tag="JN125_003028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418493.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
     gene            1770..3206
                     /gene="nrfA"
                     /locus_tag="JN125_003029"
     CDS             1770..3206
                     /gene="nrfA"
                     /locus_tag="JN125_003029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming nitrite reductase cytochrome
                     c552 subunit"
                     /protein_id="HAY8872723.1"
                     /translation="MTRIKINARRIFSLLIPFFFFTSVHAEQTAAPAKPVTVEAKNET
                     FAPQHPDQYLSWKATSEQSERVDALAEDPRLVILWAGYPFSRDYNKPRGHAFAVTDVR
                     ETLRTGAPKNAEDGPLPMACWSCKSPDVARLIQKDGEDGYFHGKWARGGPEIVNNLGC
                     ADCHNTASPEFAKGKPELTLSRPYAARAMEAIGKPFEKAGRFDQQSMVCGQCHVEYYF
                     DGKNKAVKFPWDDGMKVENMEQYYDKIAFSDWTNSLSKTPMLKAQHPEYETWTAGIHG
                     KNNVTCIDCHMPKVQNAEGKLYTDHKIGNPFDNFAQTCANCHTQDKAALQKVVAERKQ
                     SINDLKIKVEDQLVHAHFEAKAALDAGATEAEMKPIQDDIRHAQWRWDLAIASHGIHM
                     HAPEEGLRMLGTAMDKAADARTKLARLLATKGITHEIQIPDISTKEKAQQAIGLNMEQ
                     IKAEKQDFIKTVIPQWEEQARKNGLLSQ"
     gene            3251..3817
                     /gene="nrfB"
                     /locus_tag="JN125_003030"
     CDS             3251..3817
                     /gene="nrfB"
                     /locus_tag="JN125_003030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418495.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase pentaheme
                     subunit"
                     /protein_id="HAY8872724.1"
                     /translation="MSVLRSLLTAGVLASGLLWSLNGITATPAAQASGDRYEVTQQRN
                     PDAACLDCHKPDTEGMHGKHASVINPNNKLPVTCTNCHGQPSPQHREGVKDVMRFNEP
                     MYKVGEQNSVCMSCHLPEQLQKAFWPHDVHVTKVACASCHSLHPQQDTMQTLSDKGRI
                     KICVDCHSDQRTNPNFNPASVPLLKEQP"
     gene            3814..4485
                     /gene="nrfC"
                     /locus_tag="JN125_003031"
     CDS             3814..4485
                     /gene="nrfC"
                     /locus_tag="JN125_003031"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase Fe-S protein"
                     /protein_id="HAY8872725.1"
                     /translation="MTWSRRQFLTGVGVLAAVSGTAGRVVAKTLNINGVRYGMVHDES
                     LCIGCTACMDACREVNKVPEGVSRLTIIRSEPQGEFPDVKYRFFRKSCQHCDHAPCVD
                     VCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTKTADKCDFCRKTNL
                     QAGKLPACVEACPTKALTFGNLDDPNSEISQLLRQKPTYRYKLALGTKPKLYRVPFKY
                     GEVSQ"
     gene            4482..5438
                     /gene="nrfD"
                     /locus_tag="JN125_003032"
     CDS             4482..5438
                     /gene="nrfD"
                     /locus_tag="JN125_003032"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase subunit NrfD"
                     /protein_id="HAY8872726.1"
                     /translation="MTQTSAFHFESLVWDWPIAIYLFLIGISAGLVTLAVLLRRFYPQ
                     AGGADSTLLRTTLIVGPGAVILGLLILVFHLTRPWTFWKLMFHYSFTSVMSMGVMLFE
                     LYMVVLVLWLAKIFEHDLLALQQRWLPKLGIVQKVLSLLTPVHRGLETLMLVLAVLLG
                     AYTGFLLSALKSYPFLNNPILPVLFLFSGISSGAAVALIAMAIRQRSNPHSTEAHFVH
                     RMEIPVVWGEIFLLVAFFVGLALGDDGKVRALVAALGGGFWTWWFWLGVAGLGLIVPM
                     LLKSWVNRSSGIPAVLAACGASLVGVLMLRFFILYAGQLTVA"
     gene            5458..7176
                     /locus_tag="JN125_003033"
     CDS             5458..7176
                     /locus_tag="JN125_003033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014640253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase CcmF/NrfE family subunit"
                     /protein_id="HAY8872727.1"
                     /translation="MDVFLPEVGFLALLLSLGVNVLTPLTAFAGVRLRWPAMMRLTCI
                     GILAQFALLLLAFGVLTYCFLISDFSVIYVAQHSYSLLSWELKLAAVWGGHEGSLLLW
                     VLLLSAWSALFAWHYRQQTDPLFPLTLAVLSLMLAALLLFVVLWSDPFVRIFPPAIEG
                     RDLNPMLQHPGLIFHPPLLYLGYGGLMVAASVALASLLRGEFDAASARICWRWALPGW
                     SALTAGIILGSWWAYCELGWGGWWFWDPVENASLLPWLSATALLHSLSLTRQRGIFRH
                     WSLLLAIVTLMLSLLGTLIVRSGILVSVHAFALDNVRAVPLFSLFALISLASLALYGW
                     RARDGGPAVRFSGLSREMLILATLLLFCAVLLIVLVGTLYPMIYGLLGWGRLSVGAPY
                     FNRATLPFGLLMLVVIVLATFVSGKRVQLPALVAHAGVLLFAAGIVVSSVSRQEISLN
                     LQPGQQVTLAGYTFRFERLDLQAKGNYTSEKAIVALFDHQQRIGELMPERRFYEARRQ
                     QMMEPSIRWNGIHDWYAVMGEKTGADRYAFRLYVQSGVRWIWGGGLLMIAGALLSGWR
                     GRKRDE"
     gene            7169..7552
                     /gene="nrfF"
                     /locus_tag="JN125_003034"
     CDS             7169..7552
                     /gene="nrfF"
                     /locus_tag="JN125_003034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfF"
                     /protein_id="HAY8872728.1"
                     /translation="MNKGLLTLLLLFTCFARAQVVDTWQFANPQQQQQALNIASQLRC
                     PQCQNQNLLESNAPVAVSMRHQVYSMVAEGKNEVEIIGWMTERYGDFVRYNPPLTGQT
                     LVLWALPVVLLLLMALILWRVRAKR"
     gene            7549..8145
                     /gene="nrfG"
                     /locus_tag="JN125_003035"
     CDS             7549..8145
                     /gene="nrfG"
                     /locus_tag="JN125_003035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme lyase NrfEFG subunit NrfG"
                     /protein_id="HAY8872729.1"
                     /translation="MKEPKIPVKMLTTLTILMVFLCVGSYLLSPKWQAVHAEYQRQRD
                     PLHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL
                     RGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANY
                     AQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSD"
     gene            8487..9800
                     /gene="gltP"
                     /locus_tag="JN125_003036"
     CDS             8487..9800
                     /gene="gltP"
                     /locus_tag="JN125_003036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate/aspartate:proton symporter GltP"
                     /protein_id="HAY8872730.1"
                     /translation="MKNIKFSLAWQILFAMVLGILLGSYLHYHSDSRDWLVVNLLSPA
                     GDIFIHLIKMIVVPIVISTLVVGIAGVGDAKQLGRIGAKTIIYFEVITTVAIILGITL
                     ANVFQPGAGVDMSQLATVDISKYQSTTEAVQSSSHGIMGTILSLVPTNIVASMAKGEM
                     LPIIFFSVLFGLGLSSLPATHREPLVTVFRSISETMFKVTHMVMRYAPVGVFALIAVT
                     VANFGFSSLWPLAKLVLLVHFAILFFALVVLGIVARLCGLSVWILIRILKDELILAYS
                     TASSESVLPRIIEKMEAYGAPASITSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGID
                     LSIWQEIILVLTLMVTSKGIAGVPGVSFVVLLATLGSVGIPLEGLAFIAGVDRILDMA
                     RTALNVVGNALAVLVIAKWEHKFDRKKALAYEREVLGKFDKTADQ"
     gene            complement(9878..10126)
                     /locus_tag="JN125_003037"
                     /pseudo
     CDS             complement(9878..10126)
                     /locus_tag="JN125_003037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313087.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="sel1 repeat family protein"
BASE COUNT         2189 a         2586 c         2849 g         2502 t
ORIGIN      
        1 agaagtaggt ctgttcaaaa cgttcgtgat cgccaaacag cgtacgcgcc tgacccggcc
       61 aggagtcggt gatcaccagg ctgccttcgg tagcgccagg cagtggcgtg atcatgaaac
      121 cgccagtttc ggtctgccac caggtatcga ccaccggaca tttctcgttg ccgatttttt
      181 tccagtacca ctcccacgct tccgggttaa ttggctcgcc cacggaaccg agaatgcgca
      241 gcgacgaacg gtcggtaccc tcgatcgctt tatcgccttc cgccatcagc gcgcggatcg
      301 ccgtgggtgc ggtatagaga atattgacct gatgcttgtc caccacctgc gccatacggg
      361 caggcgtcgg ccagttgggt acgccttcaa acatcagcgt ggtcgcaccg caggccagcg
      421 ggccgtacag caagtaactg tgtccggtca cccagcccac atcggcggtg caccagtaga
      481 tatcacccgg atgataatca aagacatatt taaaggtcag cgccgcgtac accagataac
      541 cgccggtagt atgcagcaca ccttttggct taccggtaga accggaggtg tagagaataa
      601 acagcggatc ttcggcgttc atctcttccg cctggtgctg atcgctcgct tgctcaacca
      661 ggtcgtgcca ccacaggtcg cgcccttcct gccagtcaat tttcccgcca gtacgcttca
      721 gtaccaccac atgctctacg ctggtgacgt tcgggttttt cagcgcgtca tcaacgtttt
      781 tcttcagcgg aatactgcgc ccggcacgca caccttcgtc ggaagtgatc accagtcgtg
      841 agttggaatc aataatgcgc ccggcaacgg cttccggcga gaagccgccg aaaatcaccg
      901 aatgcaccgc gccaatgcgg gcgcaggcca gcatcgcaac cgcggcttcc ggcaccatcg
      961 gcatataaat cgccaccaca tcaccttttt taatgcccag ctcgagcagg gtattggcga
     1021 agcggcagac gtcgcggtgc agctctttat agctgatatg tttgctctgg ctgccgtcgt
     1081 cgccttccca gatgatggcg gtacgatcgc cgttttcttg cagatggcgg tcaaggcagt
     1141 ttgccgccag attcagcggc cgtcctcgta ccatttaatg gacacattac cgggggcaaa
     1201 ggaggtgttt ttcaccttct ggtaaggttt gatccagtca agaatttttc cctgttcgcc
     1261 ccagaaggta tcaggtacgt taatagattg ttgatacatt gcctcgtact gctgagggtt
     1321 tatcaggcaa cggtctgcga tgttggcagg aatggtgtgt ttgtgaattt ggctcatgct
     1381 tttgttctcc ttgtagaata ttaataatat gtggcatagg cgttaaatgt aggggtattg
     1441 gcagttttgt ttagtatttg ggcgacagat cacgcaaaag tagaattgtg caaataaacg
     1501 gcagggtaat ttttgaaggt cagcaacaaa agttgattaa ttctttgagg aacatgcagt
     1561 tatgcatgct gttgaaaaag aggaagatac tgactaactc taaaatggta ttttacatgc
     1621 acttacaatt gattaaagac aacattcaca gtgtggttat ttgttacaca taggggcgag
     1681 caatgtcatg acagtgtagg tgcggttact gtcgtgaaaa acaataaaaa ccgccattgc
     1741 aacaatggcg caattcggat gaagccccta tgacaaggat aaaaataaac gcacgccgta
     1801 tcttcagctt attgattcct tttttctttt tcacttctgt tcacgctgaa caaacggcag
     1861 ctcccgcaaa acctgtaact gtggaagcga agaatgaaac ctttgccccg cagcatcccg
     1921 atcaatatct ctcctggaaa gccacctcgg aacagtcaga gcgtgttgac gccctggcgg
     1981 aagatccacg gctggtgatc ctgtgggcgg ggtatccctt ctcgcgcgat tacaacaagc
     2041 cgcgtggaca tgcctttgct gtgaccgatg tgcgtgaaac cctgcgtacc ggtgcgccga
     2101 aaaacgctga agatggtccg ctaccgatgg cgtgctggag ttgtaaaagc ccggatgtgg
     2161 cgcgtctgat ccagaaagac ggcgaagatg gctacttcca cggtaagtgg gcgcgcggcg
     2221 gcccggaaat cgtcaacaac ttaggttgtg ccgactgcca taacaccgcc tcaccagagt
     2281 tcgccaaagg caaaccggag ttaacccttt cccgtccgta tgcggctcgc gcgatggaag
     2341 ccattggtaa accttttgag aaagccggac gtttcgacca gcaatcgatg gtttgcggtc
     2401 agtgccatgt ggagtattac ttcgacggca aaaacaaagc ggttaaattc ccgtgggatg
     2461 acggcatgaa agtcgaaaat atggagcagt attacgacaa aattgccttc tctgactgga
     2521 ctaactccct gtcgaaaacg ccaatgctga aagcgcagca cccggaatat gaaacctgga
     2581 cagcgggcat tcacggtaaa aacaacgtga cctgtatcga ctgccatatg ccaaaagtgc
     2641 agaacgccga aggcaaactc tacaccgacc ataaaattgg taatccgttt gataacttcg
     2701 cccagacttg tgcgaactgc catacccagg acaaagctgc cttgcaaaaa gtggtcgcgg
     2761 aacgtaagca gtcgattaac gacctgaaaa tcaaggttga agatcaactg gttcacgctc
     2821 acttcgaagc gaaagcagcg ctggatgcag gcgcgacgga agctgaaatg aagccaattc
     2881 aggacgatat ccgtcatgcc cagtggcgct gggatctggc gatcgcttcc cacggcattc
     2941 atatgcacgc accggaagaa ggtttacgga tgctcggtac ggcgatggat aaagcggcgg
     3001 atgcacgcac caaactggcg cgcctgctgg cgaccaaagg catcacccat gaaatccaga
     3061 tcccggatat ctcaaccaaa gagaaagccc agcaggccat tggcctgaac atggaacaaa
     3121 tcaaggccga gaagcaggac ttcatcaaaa cggtgatccc gcagtgggaa gaacaggcac
     3181 gtaaaaacgg tctgttaagc caataacccc gttccgcctc gcaaggggcg gaaaacacaa
     3241 tggagtgaat atgagcgtat tacgttcgtt attaactgct ggggtgctgg cgtcgggcct
     3301 gttgtggagc ctgaacggaa ttaccgctac ccctgcggcg caggcatctg gtgatcgcta
     3361 cgaagttacc cagcagcgta acccggatgc cgcctgtctg gactgtcata aaccagatac
     3421 cgaaggtatg catggcaaac atgcttccgt tatcaacccg aataacaaat tgccggtcac
     3481 ctgcaccaac tgtcacggcc agccatcacc gcaacaccgc gaaggggtga aagatgtgat
     3541 gcgctttaac gagccgatgt acaaggtcgg agagcagaac agcgtctgta tgtcctgtca
     3601 tctgccggaa cagttgcaaa aagcgttctg gccgcacgat gtccacgtaa ccaaagtggc
     3661 gtgcgccagc tgccattccc tgcatccaca gcaagatacg atgcagacgt taagtgacaa
     3721 aggacggatt aagatttgcg tcgattgcca cagcgatcag cgcaccaatc cgaactttaa
     3781 cccggcgtct gttccgttgc ttaaggagca gccatgacct ggtctcgtcg ccagtttctc
     3841 accggcgtcg gcgtgctggc agccgtcagc ggcaccgcag ggcgcgtggt ggcgaaaacg
     3901 ttgaatatca atggggtgcg ttacggcatg gtgcatgacg agtcgttatg catcggctgt
     3961 accgcctgta tggatgcttg tcgagaagtg aacaaggtgc cggaaggcgt ctcgcgcctg
     4021 acgattattc gtagcgagcc gcagggcgaa tttcctgatg tgaaatatcg cttcttccgt
     4081 aagtcttgcc agcactgcga tcatgcgccg tgcgttgacg tctgcccgac cggtgcgtct
     4141 tttcgtgatg ccgctagcgg gattgtcgat gttaatcctg atctctgcgt cggttgtcag
     4201 tactgcatcg ccgcctgtcc gtaccgcgtg cgctttatcc atccggtcac gaagacggcg
     4261 gacaaatgcg atttctgccg taaaaccaat ttgcaggccg gtaagctgcc cgcgtgcgtt
     4321 gaggcttgcc cgacgaaggc gctgacgttt ggcaatctgg acgatcctaa cagtgagatt
     4381 tcgcaactgc tgcgccagaa gcctacttac cgctacaagc tggcgctggg aaccaaaccg
     4441 aagctgtacc gcgtaccgtt taaatacggg gaggtgagcc aatgacgcag acttccgcat
     4501 ttcattttga atcgctggtg tgggactggc cgattgccat ctacctgttt ttgattggta
     4561 tttctgccgg tctggtgacg ctggccgtgc tgttacgtcg cttctacccg caggcgggcg
     4621 gtgcagacag tacgttgctg cgcaccacgc tgattgtcgg gccgggcgcg gtgatcctcg
     4681 gtctgttgat cctcgtcttc cacctgacaa gaccgtggac cttctggaag ctgatgttcc
     4741 actacagttt tacctcggtg atgtcgatgg gggtgatgct gtttgagctt tacatggtgg
     4801 tgctggtgct gtggctggcg aaaatctttg aacatgattt gcttgccctg caacaacgct
     4861 ggttgccgaa gctggggatc gtgcaaaagg ttctgagcct gctgacgccc gttcatcgcg
     4921 gactggaaac gctgatgctg gtgttggcgg tgctgctggg ggcttatacc ggctttctgc
     4981 tgtcggcgct gaaatcgtat ccgttcctca ataacccgat cctgccggtg ctgttcctct
     5041 tctccggcat ctcgtccggt gcggcggtgg cgctgatcgc catggcgata cgccaacgca
     5101 gtaacccgca ttccacggaa gcgcactttg ttcaccggat ggaaatcccc gtggtatggg
     5161 gtgaaatctt cctgctggtg gcgttttttg tcggtctggc gctgggcgat gacggtaaag
     5221 ttcgtgcgct ggtggcggca ttaggtggcg gtttctggac gtggtggttc tggcttggtg
     5281 tcgccgggct ggggctgatt gtgccaatgt tgctcaaatc gtgggtcaat cgcagttccg
     5341 gcattcctgc cgtgctggcg gcgtgtgggg ccagtctggt cggcgtgttg atgctgcgct
     5401 ttttcattct ctacgccgga cagttgacgg tggcgtaagc cagaaaagag gtggtttctg
     5461 gacgtattcc ttcctgaagt cggttttctg gcgttgttgt taagtctcgg ggtcaacgtg
     5521 ttgaccccgt tgacggcctt tgcgggagtg cggttgcgct ggcctgccat gatgcgactc
     5581 acttgcatcg gcattctggc gcagttcgcg ctcctgctgc tcgcctttgg cgtactgacg
     5641 tattgttttc tcatcagcga tttctcggtc atttatgtcg cccaacatag ctacagcctg
     5701 ctgtcgtggg aactcaaact ggcggcggtg tggggcggtc atgaaggttc gctgctgctt
     5761 tgggtgctgc tgctttccgc ctggagcgcg ctgtttgcct ggcattatcg gcagcaaacc
     5821 gatccgctat ttccgctgac gctagccgtt ttatctctca tgctcgccgc actgctactg
     5881 tttgtggtgc tgtggtccga tcccttcgtg cggatatttc caccagcaat cgaaggccgc
     5941 gatctcaatc cgatgctgca acatcccggt cttatctttc atccaccgct gctttacctt
     6001 ggctatggcg gtttgatggt agcggcgagc gtggcgctgg cgagtctact gcgcggcgag
     6061 tttgatgcgg ccagcgcccg aatttgctgg cgctgggcgt tacctggctg gagtgcatta
     6121 acggcgggga tcatcctcgg ttcctggtgg gcctactgcg aactcggctg gggcggctgg
     6181 tggttctggg atccggtgga aaatgcctct ttattaccct ggctttctgc cactgcgctg
     6241 ctgcacagtt tatccctgac acgccagcgg gggatttttc gccactggtc gctgttactg
     6301 gcgatagtta ctctgatgct gtcgctgctg ggcaccttaa ttgtccgttc tggcattctg
     6361 gtttcggttc atgcgttcgc gctggataac gtccgcgccg tgccgttgtt cagcctgttt
     6421 gcactgatta gccttgcgtc tctggctctg tatggctggc gagcgcggga cggtggcccg
     6481 gcggtgcgtt tttcggggtt atcgcgggaa atgttaatcc tcgctacgct gttgctgttt
     6541 tgcgcagtgc tactgatcgt gctggtggga acgctttatc cgatgattta cggtctgctg
     6601 ggctggggac gcctctccgt tggcgcgccg tattttaacc gcgcgacgtt accgtttggt
     6661 ctgttgatgc tggtggtgat tgtgctggcg acgtttgtct ctggcaaacg cgtgcagctt
     6721 ccggcgctgg tagctcatgc gggcgtgctg ttatttgccg ctgggatcgt ggtttccagc
     6781 gtcagccgtc aggagatcag cctgaattta cagccgggtc agcaggtgac gctggcagga
     6841 tacaccttcc gttttgagcg cctcgatctg caagccaaag gcaattacac cagcgaaaaa
     6901 gcgatagtgg cactgtttga ccatcagcaa cgcattggtg aactgatgcc ggagcggcgt
     6961 ttttacgaag cacgtcgtca gcaaatgatg gaaccgtcaa ttcgctggaa cggcatccat
     7021 gactggtatg cggtcatggg tgaaaaaacc ggagcggatc gttacgcttt tcgcttgtat
     7081 gtacaaagcg gtgtgcgctg gatctggggg ggaggattgt tgatgattgc gggcgcattg
     7141 ttaagcggat ggcgggggag gaagcgcgat gaataaagga cttctcacgc tactgctgtt
     7201 atttacctgt tttgcgcgcg ctcaggtcgt agacacctgg caattcgcca atccgcaaca
     7261 acagcaacag gcgttaaata ttgccagcca gttacgttgt ccgcagtgcc agaatcaaaa
     7321 cttactggaa tccaacgcgc cggtggcagt cagtatgcgc catcaggttt acagcatggt
     7381 ggcggagggg aagaacgaag tcgaaatcat tggctggatg accgaacgct acggagattt
     7441 tgttcgctat aacccaccgt taacgggtca gacgctggtg ttgtgggcgc tgccagtggt
     7501 gttgttactg ctgatggcac tgatcctctg gcgagtgagg gcgaagcgat gaaagagccc
     7561 aaaataccgg tgaaaatgct gacaacactc acgattttga tggtatttct ctgtgtcggc
     7621 agttatctgt taagtccaaa atggcaggcg gtacatgcgg aatatcagcg tcagcgcgat
     7681 ccgctacatc agtttgccag ccagcaaacc ccggaagcgc agcttcaggc attgcaggat
     7741 aaaatccgcg ctaatccaca aaacagcgaa caatgggcgt tactgggcga gtactatctg
     7801 tggcaaaacg attacagcaa ttcgctgctg gcgtaccgtc aggcgttgca actacgtggt
     7861 gagaacgctg aactgtatgc ggcgctggcg acggtgcttt attaccaggc cagccagcat
     7921 atgaccgccc agactcgcgc aatgatcgac aaagccctcg cgctggactc taacgaaatc
     7981 accgctctga tgctgctggc ttccgatgcg tttatgcagg cgaattacgc gcaagccatc
     8041 gaactatggc aaaaagtgat ggatctcaac tcaccccgga tcaaccggac acagctggtc
     8101 gagtcgatta atatggcgaa attgttgcag cggagatcgg attaatcatc tggtgatgaa
     8161 gattatgtta ttgagctgca taaaaaataa tcgaatgaac atatgccaaa aataatcact
     8221 aatcagtatt attgcagatt aaacaaataa aaatctttcc ataacaaatg gttattcatt
     8281 aatcctgaca taaactcgcg ttattatgca ttaatgcagc gaaaagctct gttgttaaag
     8341 ggttgcgcaa cataccgcgc aaatgatact gatcataagc gttaaaaaaa tctacaaacc
     8401 aacgcaacac aattcatgcc ctggcagtat gtcacgttct cgcgtttctg aacggggaac
     8461 ggcgctccat tgaggaagtt attctgatga aaaatataaa attcagcctg gcctggcaga
     8521 ttctgtttgc tatggtgctg ggcattctcc tgggaagcta cctgcactac catagcgaca
     8581 gccgcgactg gctggtcgtc aatttgctct ctccggcggg tgatatcttc atccatctga
     8641 ttaaaatgat tgttgtgccg attgtgatct ccacgctggt ggtgggtatc gcgggtgtgg
     8701 gtgatgccaa acagctcggg cgtattggcg cgaaaaccat tatttacttc gaggtgatca
     8761 ccaccgtcgc catcattttg gggatcactc tggcgaacgt cttccagccc ggtgccgggg
     8821 tggatatgtc gcagctggcg accgtcgata tctcgaaata tcagagcact acggaagcgg
     8881 tacaaagcag ttcccacggc attatgggca cgattttgtc gctggtgccg acgaacattg
     8941 tggcgtcgat ggcgaaaggc gaaatgctgc cgatcatctt cttctcggtg ctgtttggtc
     9001 tggggctttc ctccctgccc gcgacgcatc gtgaaccgct ggtgaccgtg ttccgctcca
     9061 tctctgaaac catgtttaaa gtgactcaca tggtgatgcg ttatgcaccg gtgggtgtgt
     9121 ttgcgctgat tgcggtgacg gtggctaact ttggtttctc ttctctgtgg ccactggcga
     9181 aactggtgct gctggtgcat ttcgccattc tgttcttcgc gctggtagtg ctgggaattg
     9241 tggcgcgcct gtgcgggtta agcgtctgga tcctgattcg tattctgaaa gatgagctga
     9301 ttctggcgta ctccactgcc agctctgaaa gcgtactgcc gcgaattatt gagaagatgg
     9361 aagcctacgg agcaccggcg tcgatcacca gcttcgtggt gccgaccggt tactctttta
     9421 accttgatgg ttcgacgctg tatcaaagta ttgccgctat tttcatcgct cagctgtatg
     9481 gcattgacct gtccatctgg caggaaatca ttctggtgct gacgctgatg gtgacctcga
     9541 aagggattgc tggcgtgccg ggcgtgtcgt ttgtggtgtt gctggcaacg ctgggtagcg
     9601 taggtattcc gctggaaggt ctggcgttta ttgctggtgt tgaccgtatc ctcgacatgg
     9661 cgcgtactgc gctgaacgtg gtgggtaatg cgctggcggt gctggtgatt gccaagtggg
     9721 aacacaaatt tgaccgcaaa aaggcgctgg cttatgagcg tgaagtgctg ggcaaatttg
     9781 ataaaactgc ggatcaataa ttgaagattg ccggggttat ccacccggca atgtgtggat
     9841 gcctgatgcg acgctggtgc gtcttatcag gcctacctta accgttggtt aatttttcaa
     9901 actcttcaca ccggtatcaa acccttccat acagctcagg ttcaaccagt gcagcgcctt
     9961 ttgtttgttc ttctcgataa aaccttcttc accgtttaag aacatcattc ccgcccagta
    10021 ctcggaataa ccggttcggg aaattgcaga gctgcgtttg aaataccagg ttgccttgtc
    10081 atcgtcggtc ttaatgccca cgccgttggc gtaaatcaaa ccaagc
//
LOCUS       DADMHM010000142        10119 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.144, whole genome shotgun sequence.
ACCESSION   DADMHM010000142 DADMHM010000000
VERSION     DADMHM010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10119)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10119)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10119
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.144"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            204..356
                     /gene="hokA"
                     /locus_tag="JN125_003038"
     CDS             204..356
                     /gene="hokA"
                     /locus_tag="JN125_003038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001135724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin HokA"
                     /protein_id="HAY8872731.1"
                     /translation="MPQKYGLLSLIVICFTLLFFTWMVRDSLCELHIKQGRYELAAFL
                     ACNLKE"
     gene            complement(543..755)
                     /gene="cspA"
                     /locus_tag="JN125_003039"
     CDS             complement(543..755)
                     /gene="cspA"
                     /locus_tag="JN125_003039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone/antiterminator CspA"
                     /protein_id="HAY8872732.1"
                     /translation="MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKS
                     LDEGQKVSFTIESGAKGPAAGNVTSL"
     gene            complement(1036..1326)
                     /locus_tag="JN125_003040"
     CDS             complement(1036..1326)
                     /locus_tag="JN125_003040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator"
                     /protein_id="HAY8872733.1"
                     /translation="MEYKDPMHELLSSLEQIVFKDETQKITLTHRTTSCTEIEQLRKG
                     TGLKIDDFARVLGISVAMVKEWESRRVKPSSAELKLMRLIQANPALSKQLME"
     gene            1759..2469
                     /locus_tag="JN125_003041"
     CDS             1759..2469
                     /locus_tag="JN125_003041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418010.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3053 domain-containing protein"
                     /protein_id="HAY8872734.1"
                     /translation="MATGKSCSRWFAPLAALLMVVSLSGCFDKEGDQRKAFIDFLQNT
                     VMRSGERLPTLTADQKKQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQ
                     DYVTQSGPLREMNGSLGVLAQQLQNAKLQADAAHSALKQTDDLKPVFDQAFTKVVTTP
                     ADALQPLIPVAQTFTQQLVMVGDYIAQQGTQVSFVANGIQFPTSQQASEYNKLIAPLP
                     AQHQAFNQAWTTAVTATQ"
     gene            complement(2519..3493)
                     /gene="ghrB"
                     /locus_tag="JN125_003042"
     CDS             complement(2519..3493)
                     /gene="ghrB"
                     /locus_tag="JN125_003042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312465.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate/hydroxypyruvate reductase GhrB"
                     /protein_id="HAY8872735.1"
                     /translation="MKPSVILYKALPDDLLQRLQEHFTVHQVANLSPQTVEQNAAIFA
                     EAEGLLGSNENVDAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTET
                     VADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMAL
                     AQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLF
                     GAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLS
                     MANVVAVPHIGSATHETRYGMAACAVDNLIDALQGKVEKNCVNPHVAD"
     gene            complement(3597..4256)
                     /locus_tag="JN125_003043"
     CDS             complement(3597..4256)
                     /locus_tag="JN125_003043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family lipoprotein"
                     /protein_id="HAY8872736.1"
                     /translation="MKKRVYLIAAVVSGALAVSGCTTNPYTGEREAGKSAIGAGLDSL
                     VGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRS
                     GDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDL
                     NMRLSQQRADSVASALITQGVDASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSP
                     L"
     gene            4409..6742
                     /locus_tag="JN125_003044"
     CDS             4409..6742
                     /locus_tag="JN125_003044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418007.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin guanine dinucleotide-containing
                     S/N-oxide reductase"
                     /protein_id="HAY8872737.1"
                     /translation="MANSSSRYSVLTAAHWGPMLVETDDETVFSSRGALATGMENSLQ
                     SAVRDQVHSNTRVRFPMVRKGFLASPENPQGIRGQDEFVRVSWDEALDLIHQQHKRIR
                     EAYGPASIFAGSYGWRSNGVLHKASTLLQRYMALAGGYTGHLGDYSTGAAQAIMPYVV
                     GGSEVYQQQTSWPLVLEHSDVVVLWSANPLNTLKIAWNASDEQGLSYFSALRDSGKKL
                     ICIDPMRSETVDFFGDKMEWVAPHMGTDVALMLGIAHTLVENGWHDEAFLARCTTGYA
                     VFASYLLGESDGIAKTAEWAAGICGVHAAKIRELAALFHQNTTMLMAGWGMQRQQFGE
                     QKHWMIVTLAAMLGQIGTPGGGFGLSYHFANGGNPTRRSAVLSSMQGSLPGGSDAVDK
                     IPVARIVEALENPGCAYQHNGMNRLFPDIRFIWWAGGANFTHHQDTNRLIRAWQKPEL
                     VVISECFWTAAAKHADIVLPATTSFERNDLTMTGDYSNQHLVPMKQVVPPRYEARNDF
                     DVFAELSERWEKGGYARFTEGKSELQWLETFYNVARQRGASQQVELPPFAEFWQANQL
                     IEMPENPDSERFIRFADFCRDPQAHPLKTDSGKIEIFSQRIADYAYPDCPGHPMWLEP
                     DEWQGNAEPEQLQVLSAHPAHRLHSQLNYSSLRELYAVANREPATIHPDDALARGIQD
                     GDTVRLWNARGQILAGAVISEGIKPGVICIHEGAWPDLDLTADGICKNGAVNVLTKDL
                     PSSRLGNGCAGNTALAWLEKYNGPELTLTAFEPPASS"
     gene            complement(6711..7151)
                     /locus_tag="JN125_003045"
     CDS             complement(6711..7151)
                     /locus_tag="JN125_003045"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HAY8872738.1"
                     /translation="MIREAQRSELPAILELWLESTTWGHPFIKANYWRDCIPLVRDAY
                     LANAQNWVWEEDSKLLGFVSIMEGRFLAAMFVAPKAVRRGIGKALMQYVQQRHPHLML
                     EVYQKNQPAINFYQAQGFHIVDCAWQDETQLPTWIMSWPVVQTL"
     gene            complement(7148..7711)
                     /gene="tag"
                     /locus_tag="JN125_003046"
     CDS             complement(7148..7711)
                     /gene="tag"
                     /locus_tag="JN125_003046"
                     /EC_number="3.2.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HAY8872739.1"
                     /translation="MERCGWVSQDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGL
                     SWITVLKKRENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAY
                     LQMEQNGEPFADFVWSFVNHQPQVTQATTLSEIPTSTPASDALSKALKKRGFKFVGTT
                     ICYSFMQACGLVNDHVVGCCCYPGNKP"
     gene            7869..8567
                     /locus_tag="JN125_003047"
     CDS             7869..8567
                     /locus_tag="JN125_003047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709326.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HAY8872740.1"
                     /translation="MIIKKSGGRWQLSLLASVVISAFFLNTAYAWQQEYIVDTQPGHS
                     TERYTWDSDHQPDYNDILSQRIQSSQRALGLEVNLAEETPVDVTSSMSMGWNFPLYEQ
                     VTTGPVAALHYDGTTTSMYNEFGDSTTTLTDPLWHASVSSLGWRVDSRLGDLRPWAQI
                     SYNQQFGENIWKAQSGLSRMTATNQNGNWLDVTVGADMLLNQNIAAYAALTQAENTTN
                     NSDYLYTMGVSARF"
     gene            8795..9997
                     /locus_tag="JN125_003048"
     CDS             8795..9997
                     /locus_tag="JN125_003048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8872741.1"
                     /translation="MTPSNYQRTRWLTLIGTIITQFALGSVYTWSLFNGALSAKLDAP
                     VSQVAFSFGLLSLGLAISSSVAGKLQERFGVKRVTMASGILLGLGFFLTAHSDNLMML
                     WLSAGVLVGLADGAGYLLTLSNCVKWFPERKGLISAFAIGSYGLGSLGFKFIDTQLLE
                     TVGLEKTFVIWGAIALVMIVFGATLMKDAPKQEVKTSNGVVEKDYTLAESMRKPQYWM
                     LAVMFLTACMSGLYVIGVAKDIAQSLAHLDVVSAANAVTVISIANLSGRLVLGILSDK
                     IARIRVITIGQVISLVGMAALLFAPLNAVTFFAAIACVAFNFGGTITVFPSLVSEFFG
                     LNNLAKNYGVIYLGFGIGSIFGSIIASLFGGFYVTFYVIFALLILSLALSTTIRQPEQ
                     KMLREAHI"
BASE COUNT         2428 a         2435 c         2588 g         2668 t
ORIGIN      
        1 ttttttagga ttatatcaag gagaagaaac agacttatta agctagaata gctacgggtg
       61 cttgagactg tttgtctcag gtattcaccg aaaggcagac agagaaaagc cccacctgac
      121 tataaatcaa agtgaggcac cctatgcctg aacaccataa ggttagcctc ttactcgttg
      181 gaaatcaaca cagggggctg ggaatgccgc aaaaatacgg attactttca ttaatagtga
      241 tttgtttcac gcttttattt ttcacctgga tggtaagaga ttcactgtgt gaattgcata
      301 ttaaacaggg gcgttatgag ctggcggcat ttttagcctg caatttaaaa gagtaagagt
      361 cttcggcggg aaattattcc cgcctttctt acggcgttgc gcattctcat tgcacccaca
      421 tttattcttc acaaaaataa taatagattt tactacgcga tcgattattt atttcctgaa
      481 aaaaaataaa aaaatccccg ccaaatggca gggatcttag attctgtgct ttcaagcaga
      541 gattacaggc tggttacgtt accagctgcc gggcctttag cgccgctttc gatggtgaag
      601 gacactttct gaccttcgtc cagagatttg taaccatcgt tctggatagc agagaagtgt
      661 acgaacacat ctttagagcc atcgtcagga gtgatgaagc cgaagccttt gtcagcgttg
      721 aaccatttta cgataccagt cattttaccg gacatagtgt attaccttta ataattaagt
      781 gtgcctttcg gcgatatggc gtgctttaca gattttgaag cgttaaagga atgtgcacta
      841 cgaggggtat caacgataac tcttgaaggg acttgcctta ctacactgct ttaatggtct
      901 gtacgtcaaa ccgttgatgt gcattaagcc acgcattggc gggtgatgca acaattattt
      961 ttcatattta tgattaatcg gttggaaaac ggtcctgtca tcaggaccgt aaacagcaat
     1021 aaagtggata aaagtctatt ccatcaactg cttacttaat gccgggttgg cttgaatcaa
     1081 acgcatcaat tttagttcgg cacttgaagg cttcacgcgt ctggattccc attcctttac
     1141 catggcgact gatatgccca aaacccgggc gaaatcatcg atttttaacc ctgtcccttt
     1201 tcgtaactgc tcaatttcgg tacaggacgt tgttctgtgc gtcagggtaa ttttctgcgt
     1261 ttcatcttta aaaacaatct gttccaggct gctcaacagc tcatgcattg gatctttata
     1321 ttccattgaa aactcctcaa atcacactgc gggatcgtga attgcatcga agctcattaa
     1381 gaatagtcgg gaaaagcaga cacagcgggg tgaagtcagg gcatgctctg gctatgattc
     1441 gattcagcca gtcatttagc gtgacttata gccacctaac gatctgataa atgccgatat
     1501 atctcttacc actcctgttt tgtaaagatt tcgaaaatct aaagttctgc gaaggcgtaa
     1561 atctcgggct acaaaaaagc aacggcaata tcatttttta acaatgaaac aacaaattaa
     1621 ccttgtttca ttttctccat gattttacca ggaagattac gtagaaaggg tatcctgcaa
     1681 gcctgtcctg gactatcctt gtcacgtcag acacgcgtgt gtcgttgtgc gctttttttg
     1741 ggtgaaagga gtaagaaaat ggcgacagga aagtcctgct ctcgctggtt tgcgcctctt
     1801 gcggcgttat taatggtagt tagcctgagt gggtgttttg ataaagaagg cgatcagcgt
     1861 aaagcgttta tcgacttcct gcagaataca gtgatgcgta gcggtgaacg tctaccaacc
     1921 ctgactgccg atcagaaaaa acagtttggt ccttttgtct ctgattacgc gattctgtat
     1981 ggttattctc agcaggtgaa tcaggcgatg gattccggtc tgcgcccggt cgtagacagc
     2041 gttaacgcaa ttcgcgtacc gcaggattac gttacgcaaa gcggtccgct gcgtgaaatg
     2101 aacggttcgc tgggtgtgct ggcgcaacaa ctgcaaaatg cgaagttgca ggccgatgct
     2161 gcgcactctg cgctaaaaca gaccgatgat ttgaaaccgg tctttgatca ggcattcacc
     2221 aaagtggtaa cgacgccagc tgatgcattg caaccgttga ttccggttgc acaaactttc
     2281 acgcaacaac tggtgatggt tggagactac attgctcaac aaggtactca ggtgagcttt
     2341 gtagcaaatg gtatccagtt cccgacttcg cagcaggcaa gtgaatataa caaactgatt
     2401 gcgccgttac cggcacaaca tcaggcgttt aatcaggcct ggactacagc agttactgca
     2461 acccaataaa gagtaaaagc ccgagcgatt atcgggcttt acttcacgca gtcgcggctt
     2521 agtccgcgac gtgcggattc acacagttct tctcaacctt tccttgtaac gcatcaatca
     2581 aattatccac ggcacaggcg gccatgccat aacgcgtctc atgggtggca gatccaatat
     2641 gcggtactgc gacgacgttg gccattgaga gcaacggcga atctacggac agtggctctt
     2701 gttcgaagac atccagcccg gcggcgtgaa tttcgccttt ctgcaatgct gcgatcagtg
     2761 cattttcgtc aaccaccggg ccacgtccgg cattaatgaa aatggcggag gatttcattt
     2821 tggcgaattg ttctgcgcca aacagatgat gcgtctcatc agttaacggc aggatcaggc
     2881 aaacgaaatc tgactcttgt aacagagtat ccaaatcgca gtagcgggcg ttgaagcgtt
     2941 cttctgcttc tttatggtgg cggcgcgcgt tatagaggat gggcatgttg aagccaaagt
     3001 gcgcacgttg tgccagcgcc atgccgatcc gtcccatccc gacaatgccc agtgttttat
     3061 ggtgaacgtc agtgccgtac cagtccgggc ctatgctcgc ggtccattcg cctgctttta
     3121 cccgttctgc tacctccaca acccgacgag cggtagacaa caccagcgcc atcagcgtat
     3181 cggcgacggt ttctgttaat acggttggcg tgtgcatcag cagaattttt cgggcggtaa
     3241 gcgcatcgac atcaaaattg tcatagccga cggagatcgt tgatgtggca cgcagtttcg
     3301 gcattttttc cagcaatgcg gcatctacat tctcgtttga acccagtaaa ccttcagctt
     3361 cggcaaaaat tgctgcattt tgttcgacgg tttgtgggct gaggtttgcc acctggtgaa
     3421 cggtgaaatg ctcttgcagg cgttgcagta aatcatcagg taaggctttg tagaggataa
     3481 cggacggctt catgcttctc tccattcact gataaggcgc tcaccttagc ctgaaatatg
     3541 atgaaggaaa actgaagaat gctaggtgat ttctgcatca cctggcatga aagggattac
     3601 agcgggctta aggtaatttc tacacggcgg ttttgcgcct taccttctgc ggtgctgttg
     3661 ctggcgattg ggttagccgg gccaaggccc tgagtacgga tgcggctggc gtccacgccc
     3721 tgggtgatca acgcgctggc aacagaatcc gcacgctgct gggagagacg catgttcagg
     3781 tcgtgacccc ccgtgctgtc ggtataacca atcacgttaa ccgccgtttt cggatactct
     3841 ttcagcacca ttgccacgcc ggtcagggtg ttagcgcctg ccggtttcag ggtcgcgctg
     3901 ctgctgtcga aggtcacatt gttcggcata ttgaggataa tgttatcccc gctgcgggtt
     3961 acgctaacac ctgtgccgcg cattttgtca cgcagcttcg cttcctgcac atccatgtaa
     4021 taacccacgc cgccgcccag agctgcgcct gctgctgcgc caatcagcgc gcctttaccg
     4081 cgatctttct tcgaagaaga gagcgcacca atacccgcgc ccacgagaga gtccagacct
     4141 gcgccgatag cagatttgcc tgcttcgcgt tcgccggtgt aagggttagt tgtgcagcca
     4201 gataccgcca gagcgccact cactacggcg gcaataagat aaacacgttt cttcattgtt
     4261 aatccttaat aaccttttta ttctttgcca cgggttccgt ggcgggagat tatgccgcgt
     4321 gaacatgaag attattcctg ggaatactcg gaaatttgta agtaatattt aactgctcaa
     4381 tacatctaac ctttcaggag tcttcggttt ggccaactca tcctcacgat attccgttct
     4441 gactgccgcc cactgggggc ccatgctggt tgaaaccgac gacgaaaccg tgtttagctc
     4501 gcgtggcgcg ttagccacag gaatggaaaa ctccttgcag agcgcggttc gcgaccaggt
     4561 tcacagcaat acgcgggtac gatttccaat ggtgcgcaaa ggctttctcg cgtcaccgga
     4621 aaacccgcaa ggcattcgtg ggcaggatga atttgttcgc gtgagttggg atgaggcgct
     4681 ggatcttatt caccaacaac ataaacgcat tcgtgaggct tatggtccgg catcgatttt
     4741 tgctggttcc tacggctggc gttcaaacgg cgtgctgcat aaggcctcga cattattaca
     4801 acgctatatg gcgctggcag gcggttatac cgggcatctg ggggattatt cgaccggtgc
     4861 ggcacaggcg atcatgccgt atgtcgtggg tggcagcgaa gtttatcaac agcaaaccag
     4921 ttggccgctg gtgctggaac atagcgatgt cgtggtgttg tggagtgcta acccactcaa
     4981 tacgctgaaa attgcgtgga atgcatctga tgagcagggg ctttcttact tttccgcact
     5041 gcgtgacagc gggaaaaagc tgatctgtat tgatccaatg cgatcggaaa ccgtcgattt
     5101 ctttggcgat aaaatggagt gggtggcacc gcacatgggc accgatgttg cgctgatgct
     5161 ggggatcgcc catacgctgg tggaaaatgg ttggcacgac gaagcgtttc tggcgcgttg
     5221 caccacaggt tatgccgtct tcgcctctta tttgctgggc gagagtgacg gaatagccaa
     5281 aaccgccgaa tgggcggcag ggatttgtgg ggttcacgca gcgaaaattc gcgagttggc
     5341 ggctcttttc caccaaaaca cgaccatgct gatggctggc tggggaatgc agcgccaaca
     5401 gtttggtgag caaaaacact ggatgatcgt cacgctggcg gcaatgttgg ggcaaatcgg
     5461 cacacccggc ggcggttttg gtctttctta tcattttgcc aatggtggta atcccacgcg
     5521 gcgttctgcg gtgctctctt ccatgcaggg tagcttgccg ggtggcagcg atgcggtaga
     5581 taaaatccct gttgcccgta ttgttgaagc actggaaaac cctggctgcg cataccaaca
     5641 caatggcatg aatcgcctct tcccggatat tcgctttatc tggtgggcgg gtggcgccaa
     5701 cttcacccat catcaggaca ctaatcgcct gatacgagct tggcaaaaac cggagctggt
     5761 agttatctcc gaatgcttct ggacggcggc ggcaaaacac gcggatatcg ttctgcctgc
     5821 gactacctct tttgagcgta atgatctcac catgaccggc gattacagta atcagcatct
     5881 ggtgccgatg aagcaagtgg tgccgccacg ctatgaagcg cgtaatgatt ttgatgtttt
     5941 tgccgagtta agtgaacgct gggagaaggg cggttatgca cgttttacgg aaggaaaaag
     6001 tgagttgcaa tggctggaaa cgttttataa cgttgcccga cagcgcgggg caagccagca
     6061 ggttgaattg ccgccatttg ctgagttctg gcaagccaat cagttaattg agatgccgga
     6121 aaacccggac agcgagcggt ttattcgctt cgctgatttt tgccgcgatc cgcaggcgca
     6181 tccattaaaa accgacagcg gtaagattga aatcttctcg cagcgtattg ccgattacgc
     6241 ttatccggat tgcccggggc atccaatgtg gctggagccg gacgaatggc agggcaatgc
     6301 cgaaccggaa cagttacagg tactttctgc tcatccggcg catcgtctgc acagccagct
     6361 gaattacagt tctctgcgcg aattgtatgc ggtggcaaat cgtgagcctg ccaccattca
     6421 tcctgacgat gccctggcgc gcggcattca agatggcgat actgttcggc tgtggaacgc
     6481 acgcgggcaa attcttgccg gagcggtcat tagcgaggga attaaacctg gcgtgatttg
     6541 tattcacgaa ggggcatggc cggatttgga tttaaccgct gacggtattt gtaaaaacgg
     6601 cgcagtcaac gtgctgacca aagatctccc cagctcgcgg ctggggaatg gctgtgcggg
     6661 taatacggcg ctggcatggc tggaaaaata caacggtccg gaactgacac ttacagcgtt
     6721 tgaaccaccg gccagctcat aatccaggtg ggtagttggg tttcatcctg ccatgcgcaa
     6781 tcgacaatgt gaaaaccctg cgcctggtaa aaatttatcg ccggttgatt tttttgataa
     6841 acctccagca tcaggtgggg atggcgctgc tgcacatatt gcatcagcgc cttaccaata
     6901 ccgcgcctga cggccttcgg tgcgacaaac atcgctgcca gaaatcggcc ttccataatg
     6961 ctgacaaaac cgagaagctt actgtcttct tcccagaccc agttttgcgc attggcaaga
     7021 tacgcatccc gcaccagcgg aatgcaatca cgccagtaat tcgcttttat aaagggatgt
     7081 ccccaggttg tactttccag ccacagttcg aggatcgcgg ggagttctga acgttgcgct
     7141 tcccgaatca tggtttattt cccggatagc aacagcagcc aaccacatga tcattcacca
     7201 gcccacatgc ctgcataaag gagtaacaga ttgtggtacc gacaaactta aaaccacgtt
     7261 ttttcagtgc tttagatagg gcgtcggagg cgggcgtaga tgtggggatt tcgctcaacg
     7321 ttgtggcttg tgtcacctgt ggctgatgat ttacaaacga ccagacaaag tcggcaaacg
     7381 gttcgccgtt ctgttccatt tgcaggtacg cccgcgcatt accaataatt gcctgaattt
     7441 tcccgcgatg gcggataatc ccggcgtcct gtaccagtct ttctacatcc tcttcctgca
     7501 ttgctgcgac cttcaccgga tcgaactgat gaaagcaggc gcgatagttt tcgcgttttt
     7561 tgaggacggt gatccacgat aacccagcct gctgcccttc aaggcagatc atttcgaaca
     7621 gttttttact gtcagtttca ggcacgcccc actcattatc atggtaggca atataaagcg
     7681 ggtcctgact cacccagccg caacgttcca tactttccct cgctatgtac ccgatcgtaa
     7741 aaatttcagc cgcttttctt gacgcatcgg tgaaaaagtc aatatttaat acagggctac
     7801 tatgcccgat atccttcata caatgacaat aatattgccg aattcggctc ttccctggag
     7861 tcgtgttaat gatcataaaa aaaagcggtg gtcgctggca gctaagcctg ctggcgagcg
     7921 tggtaatcag tgcctttttt ctcaacacag cttacgcctg gcaacaagaa tatatcgttg
     7981 atacgcaacc cggacattcc acagagcgtt acacctggga tagtgatcat caacctgatt
     8041 acaacgatat tttgtcgcaa cgtattcaaa gtagccaaag ggcgctggga ctggaagtca
     8101 atctggcgga agaaactcct gtggatgtga ccagcagtat gagtatgggc tggaattttc
     8161 ctttatatga acaggttaca accggcccgg tcgcggcatt acattacgat ggcacaacca
     8221 cctcgatgta taacgagttt ggcgacagta ctaccacgct gaccgatccg ttatggcatg
     8281 ccagcgtgag tagcttaggc tggcgtgttg actcccggct tggcgatctc cgaccctggg
     8341 cgcaaatcag ctataaccag caatttggcg agaatatctg gaaggcgcaa tcaggcctga
     8401 gccggatgac ggcgacaaac cagaacggca actggctgga tgtcaccgta ggcgctgata
     8461 tgttgctcaa tcaaaatatt gccgcctatg ccgcgctaac tcaggcagaa aataccacta
     8521 ataatagcga ctatctgtat acgatggggg ttagcgccag attttaacgt aacagtcaca
     8581 attgaaacca ttgaataaca atagttgcgg tgatagtgtg tgctaactta caaataataa
     8641 atttggtgaa taattgtcgc gtcattcatt cctgaactaa ggcatttcat tccgttctga
     8701 tggcatttca tgccgttttt ccccaggcat aaaatgcact tcgttatggt tgtcggcaga
     8761 gatttttcct ttttattact gcaggaatac tgccatgaca ccttcaaatt atcagcgtac
     8821 ccgctggctg acactcatcg gtactatcat tacccagttt gcgctggggt cggtttatac
     8881 ctggagtctg tttaatggcg cgctttctgc caagctggat gcgccggtaa gccaggtcgc
     8941 tttctctttc ggcttgttaa gtctggggct ggcaatttca tcttctgttg cggggaaatt
     9001 acaggaacgt tttggcgtta aacgcgtcac tatggcttcc ggcattttgc taggattagg
     9061 cttcttcctg acagcgcatt ctgacaacct gatgatgctg tggttaagcg ccggtgtgct
     9121 ggtcggtctg gcggatggcg cgggttacct gctgacgctc tctaactgcg tgaagtggtt
     9181 cccggagcgt aaaggtctga tctccgcgtt cgctatcggt tcttatggtc ttggtagcct
     9241 gggtttcaaa tttatcgaca cgcagctgct ggaaacggtg ggtctggaaa aaacatttgt
     9301 gatttgggga gcgattgcgc tggtgatgat tgttttcggc gcaacgttaa tgaaagacgc
     9361 accaaaacag gaagtgaaaa ccagcaatgg tgtggtggag aaagattaca cgctggcaga
     9421 gtcgatgcgt aaaccgcagt actggatgtt agcggtaatg ttcctgactg cctgcatgag
     9481 cggcctgtac gtgattgggg tagcgaaaga tatcgcccaa agtctggcac accttgatgt
     9541 ggtttccgca gccaatgcag taacggttat ttccatcgct aacctttcag gtcgtctggt
     9601 gctgggcatt ctgtctgaca aaattgcccg tatccgtgtt atcaccattg gtcaggtgat
     9661 ttcgctggtg ggtatggcgg ccctgctgtt tgcaccatta aatgcagtga cgttctttgc
     9721 agcgattgcc tgcgtggcat ttaactttgg cggcactatt accgtctttc catcactggt
     9781 cagtgagttc ttcggcctca ataacctggc gaaaaactac ggtgtgattt acctcggttt
     9841 cggtatcggt agcatttttg gttcgattat cgcctcactg tttggcggtt tctatgtgac
     9901 cttctacgtg attttcgccc tgctgattct gtcattggcg ctttctacga cgattcgtca
     9961 gccagagcag aaaatgttgc gtgaggcgca tatttagaaa tatgttgcta ctgaaataaa
    10021 tacgaggagg gagacttcaa agtctccctt ttttatggac gcatattaaa agaacaataa
    10081 tattcatacc acaaatatat tttatttatt tatatatta
//
LOCUS       DADMHM010000143        10003 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.145, whole genome shotgun sequence.
ACCESSION   DADMHM010000143 DADMHM010000000
VERSION     DADMHM010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10003)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10003)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10003
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.145"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(271..1635)
                     /gene="tdcG"
                     /locus_tag="JN125_003049"
     CDS             complement(271..1635)
                     /gene="tdcG"
                     /locus_tag="JN125_003049"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HAY8872742.1"
                     /translation="MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSH
                     IVVDLYGSLSLTGKGHATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGA
                     HIVDFPVAKNIIFHPEMLPRHENGMRITAWKGQEALLSKTYYSVGGGFIVEEEHFGLS
                     HDVETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHD
                     GIERGMNTEGVLPGPLNVPRRAVALRRQLVSSDNISNDPMNVIDWINMYALAVSEENA
                     AGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNERSIARYFLAAGAIGALYKMNASISG
                     AEVGCQGEIGVACSMAAAGLTELLGGSPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPC
                     IERNAINAVKAVNAARMAMRRTSAQRVSLDKVIETMYETGKDMNDKYRETSRGGLAIK
                     VVCG"
     gene            complement(1707..2096)
                     /locus_tag="JN125_003050"
     CDS             complement(1707..2096)
                     /locus_tag="JN125_003050"
                     /EC_number="3.5.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312020.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enamine/imine deaminase"
                     /protein_id="HAY8872743.1"
                     /translation="MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPA
                     DVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATY
                     PTRSCVQVARLPKDVKLEIEAIAVRSA"
     gene            complement(2110..4404)
                     /gene="tdcE"
                     /locus_tag="JN125_003051"
     CDS             complement(2110..4404)
                     /gene="tdcE"
                     /locus_tag="JN125_003051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-ketobutyrate formate-lyase/pyruvate
                     formate-lyase"
                     /protein_id="HAY8872744.1"
                     /translation="MKVDIDTSDKLYADAWLGFKGTDWKNEINVRDFIQHNYTPYEGD
                     ESFLAEATPATTELWEKVMEGIRIENATHAPVDFDTNIATTITAHDAGYINQPLEKIV
                     GLQTDAPLKRALHPFGGINMIKSSFHAYGREMDSEFEYLFTDLRKTHNQGVFDVYSPD
                     MLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGISYLVRERELQFADLQSRLEKGEDL
                     EATIRLREELAEHRHALLQIQEMAAKYGFDISRPAQNAQEAVQWLYFAYLAAVKSQNG
                     GAMSLGRTASFLDIYIERDFKAGVLNEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSG
                     DPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEELPIAFKKYA
                     AQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYA
                     INGGVDEKLKIQVGPKTAPLMDDVLDYDKVMDSLDHFMDWLAVQYISALNIIHYMHDK
                     YSYEASLMALHDRDVYRTMACGIAGLSVATDSLSAIKYARVKPIRDENGLAVDFEIDG
                     EYPQYGNNDERVDSIACDLVERFMKKIKALPTYRNAVPTQSILTITSNVVYGQKTGNT
                     PDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKE
                     DPVRKTNLVGLLDGYFHHEADVEGGQHLNVNIMNREMLLDAIEHPEKYPNLTIRVSGY
                     AVRFNALTREQQQDVISRTFTQAL"
     gene            complement(4438..5646)
                     /gene="tdcD"
                     /locus_tag="JN125_003052"
     CDS             complement(4438..5646)
                     /gene="tdcD"
                     /locus_tag="JN125_003052"
                     /EC_number="2.7.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417585.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propionate kinase"
                     /protein_id="HAY8872745.1"
                     /translation="MNEFPVVLVINCGSSSIKFSVLDASDCEVLMSGIADGINSENAF
                     LSVNGGEPAPLAHHSYEGALKAIAFELEKRNLNDRVALIGHRIAHGGSIFTESAIITD
                     EVIDNIRRVSPLSPLHNYANLSGIESAQQLFPGVTQVAVFDTSFHQTMAPEAYLYGLP
                     WKYYEELGVRRYGFHGTSHRYVSQRAHSLLNLAEDDSGLVVAHLGNGASICAVRNGQS
                     VDTSMGMTPLEGLMMGTRSGDVDFGAMSWVASQTNQSLGDLERVVNKESGLLGISGLS
                     SDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLRRLDGIIFTGGIGENSSLI
                     RRLVMEHLAVLGVEIDTDMNNRSNSCGERIVSSENARVICAVIPTNEEKMIALDAIHL
                     GKVNAPAEFA"
     gene            complement(5672..7003)
                     /gene="tdcC"
                     /locus_tag="JN125_003053"
     CDS             complement(5672..7003)
                     /gene="tdcC"
                     /locus_tag="JN125_003053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine transporter TdcC"
                     /protein_id="HAY8872746.1"
                     /translation="MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRA
                     GFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITF
                     LYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLM
                     VKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILITVWLGISIM
                     VFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLF
                     TLSPANMAEAKAQNIPVLSYLANHFASMTGTKTTFAITLEYAASIIALVAIFKSFFGH
                     YLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAM
                     GAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTVIGLLTILNIVYKLF"
     gene            complement(7025..8014)
                     /gene="tdcB"
                     /locus_tag="JN125_003054"
     CDS             complement(7025..8014)
                     /gene="tdcB"
                     /locus_tag="JN125_003054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional threonine ammonia-lyase/L-serine
                     ammonia-lyase TdcB"
                     /protein_id="HAY8872747.1"
                     /translation="MHITYDLPVAIDDIIEAKQRLAGRIYKTGMPRSNYFSERCKGEI
                     FLKFENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVSLSCAMLGIDGK
                     VVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVEMEGRIFIPPYDDPKVIA
                     GQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAVAIKSINPTIRVIGVQSENVHGMAA
                     SFHSGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQR
                     NKVVTEGAGALACAALLSGKLDQYIQNRKTVSIISGGNIDLSRVSQITGFVDA"
     gene            complement(8113..9051)
                     /gene="tdcA"
                     /locus_tag="JN125_003055"
     CDS             complement(8113..9051)
                     /gene="tdcA"
                     /locus_tag="JN125_003055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator TdcA"
                     /protein_id="HAY8872748.1"
                     /translation="MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIIND
                     IEDYFGVELVVRKNTGVTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVSFG
                     FPSLIGFTFMSGMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSAEMKL
                     QDLHVEPLFESEFVLVASKSRTCTGTTTLESLKNEQWVLPQTNMGYYSELLTTLQRNG
                     ISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTSPFGSNQFITIPVEETLPVAQYAAV
                     WSKNYRIKKAASVLVELAKEYSSYNGCRRRLLIEVG"
     gene            9240..9584
                     /gene="tdcR"
                     /locus_tag="JN125_003056"
     CDS             9240..9584
                     /gene="tdcR"
                     /locus_tag="JN125_003056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional activator TdcR"
                     /protein_id="HAY8872749.1"
                     /translation="MTGITIFYGDNIIRYVVNTKKGLRPYFKQLPDNYQAKFELNLMS
                     KFSNFIINKPFSAINTAARHIFSRYLLENKHLFYQYFKISNTGIDHLEQLINVNFFSS
                     DRTSFCECNRFP"
BASE COUNT         2690 a         2516 c         2280 g         2517 t
ORIGIN      
        1 tctcgctcaa tattttgtag ggcttattat ttttttccga gccgcatcaa ggcgatatgc
       61 ggtctacgtt tttgcaggcg agttattaga ataaagaaat gatacgcgcg aggtcagaga
      121 aaatcttcac aatcaagact ttgaaataac ggagatggat aagaattttc tactaaatta
      181 atcgcaagag aatattcatt ctctatttgc ggcagatcac aaaaaaaagg tgcacatttg
      241 tgcacccaag gatgaaagct gacagcaatg tcagccgcag accactttaa tggccagtcc
      301 tccgcgtgat gtttcgcggt atttatcgtt catatctttg ccggtttcat acatcgtctc
      361 gatcacttta tcgagtgaaa cacgctgtgc cgaggtgcgg cgcatcgcca tccgcgcggc
      421 gtttactgct ttcacggcat taatggcatt acgttcaatg cacgggattt gtacctgtcc
      481 ggcaaccgga tcgcaggtca gcccaaggtt atgctccatc gcgatttccg ccgcattgca
      541 tacctgcgcc ggactgccgc ccagtagttc agttaaccct gccgccgcca ttgaacaggc
      601 cacgccaatc tccccctgac agccgacctc cgcgccagag atggaggcgt tcattttata
      661 cagcgcgcca atagcccccg ctgccagaaa atagcgggca attgaccgct cgtttaccgg
      721 acgacggaac ttatcgtaat aagccagcac tgccggaata atgccgcacg caccgttagt
      781 cggtgccgtt accacgcgcc cgccagctgc gttttcttca ctaaccgcca gcgcgtacat
      841 gttgatccag tcgatgacat tcatcggatc gttagagatg ttatcgctag aaaccagctg
      901 acgacgcagc gctacggcac gacgcggcac attgagcgga ccaggcagca cgccttcagt
      961 gttcatcccg cgttcaatac cgtcatgcat cacttgccag atacgggcaa accctgcgtc
     1021 aatttccgct ttgctgcgca gcgccagctc gttgtgcatc atcaggccag atatagacag
     1081 gccgttgtaa tcacacattt tcagcagttc acctgctgag tggaaatcgt aaggtacgga
     1141 cgtttcgaca tcgtgcgaca ggccgaagtg ttcttcttcg acaataaacc cgccgccgac
     1201 agagtaatag gttttactta atagcgcttc ctgtcccttc caggcagtga tccgcattcc
     1261 gttctcatgg cgaggcaaca tttcgggatg gaagataatg ttctttgcta caggaaaatc
     1321 aacaatatgc gcaccagatg ccactggcag ccgcccgctg cgcgttacta actctataaa
     1381 tgcagggatc tcatcaatga caacatcctg cggactgttt cctgccagtc ccatgataat
     1441 ggcgacatcc gtggcatggc ctttgcccgt cagtgacaac gacccataca gatcgaccac
     1501 aatatggctc gtcgcggtta ataagccgct actttccagc cgatcaataa aactttttcc
     1561 ggcattcatt ggccccacgg tatgcgaact ggagggacca atcccaattt tgaaaatatc
     1621 gaatgcacta atcatatcca caccctcgga ttgccgttca gtgaagtgga gcggaacgac
     1681 cttgcgaccg tcccgctcac gaggctttac gcactacgta ctgcgatagc ttcaatttcc
     1741 agcttcacat ctttcggcaa acgcgcaacc tgcacacagc tccgggtcgg gtaggtcgcc
     1801 tgatgctcat cgaagaactg cttatagact tcattgatgg tggcaaaatc attcagatcg
     1861 gtgatgaaca cggtcatctt gatgatatcg cccacgctca gcccggcagc aaccacgatc
     1921 gctttgacgt tttcgaggct taaacgcgcc tgatcttgca catcagccgg gatctcaccg
     1981 gtctgcgggc aaaccggaat ttgcccggag gtgaagacca tgctgcctaa atcaacgccc
     2041 tgaacataag ggccgattgc gcctggggca cgttgcgttt cgataatctt tttcatacat
     2101 cctccggcgt cagagcgcct gggtaaaagt acgtgaaata acatcctgtt gctgttcacg
     2161 ggtcagtgcg ttgaagcgca cggcgtagcc agagacacgg attgtcaggt taggatattt
     2221 ttccgggtgc tcgatggcat ccagcagcat ttcccgattc attatgttga cgttgaggtg
     2281 ttgaccgcct tcgacatccg cttcgtggtg gaaataccca tccagcaggc cgacaaggtt
     2341 ggttttacgt actggatctt ctttgcccag cgccgcagga acgattgaga aggtgtacga
     2401 gatcccatct ttggcgtagg tgaacggcag tttcgccacc gacgtcaatg aggccacggc
     2461 acctttgcgg tcacgaccat gcatcgggtt agcgcccggc gcgaacggtg ttccggcgcg
     2521 acgaccgtcc ggcgtattac cggttttctg gccgtacacc acgttagaag tgatagtcag
     2581 aatcgactgg gtagggacgg cgttgcgata ggttggcagc gctttaattt tcttcataaa
     2641 gcgttcaacc aggtcgcagg caatgctgtc tacgcgctcg tcgttgttgc cgtactgcgg
     2701 atattcaccg tcgatttcaa agtccaccgc caggccgttt tcgtcacgga ttggtttcac
     2761 gcgggcatat ttgatggcag acagggagtc cgtcgccacc gacaggcccg cgatgccgca
     2821 tgccatagtg cgatagacat cacgatcgtg cagcgccatc agcgaagctt cgtagctgta
     2881 cttgtcgtgc atgtagtgaa tgatattcag cgcgctgatg tactgcaccg ccagccagtc
     2941 catgaagtga tcgaggctgt ccatcacttt gtcgtaatcc agcacgtcgt ccatcagcgg
     3001 tgctgttttc ggcccgacct gaatcttcag cttctcgtcc accccgccgt taattgcgta
     3061 gagcagcgtt ttcgccaggt tagcgcgtgc accaaagaac tgcatttgct taccaatcac
     3121 cattgggctg acgcagcagg caatcgcgta atcgtcgctg ttgaagtcag tacgcatcag
     3181 atcgtcattt tcatactgca aggaagaggt gacgatcgac acctgcgcgg catatttttt
     3241 gaaggcaatc ggtaattctt ccgaccaaag aatggtcagg ttaggttccg gtgccggccc
     3301 catagtgtgc agggtgtgca aatagcggaa ggagtttttg gtcaccagcg tacgaccgtc
     3361 cagccccatc ccgccgatca cttccgtcgc ccagattggg tcgccggaga acagcgaatc
     3421 aaattccggt gtacgcagga agcgtaccat acggatcttc atgatgaagt gatcgatcag
     3481 ttcctgtgcc tgctgctcat tgagtacgcc agctttaaag tcgcgctcaa tgtagatatc
     3541 gaggaacgat gccgtgcggc ccagcgacat cgcgccgcca ttttgcgatt tcactgccgc
     3601 cagataagcg aagtagagcc actgcaccgc ttcttgcgca ttctgcgccg ggcgagagat
     3661 atcaaagcca tatttcgccg ccatttcctg aatctgcaac agcgcatgac gatgctctgc
     3721 cagctcctca cgcagacgga tggtggcttc cagatcctcg cctttttcca gacgagactg
     3781 gagatcggca aattgcagtt cgcgttcacg taccagataa ctgatgccat acagcgctac
     3841 gcggcgatag tcaccgataa tgcgcccacg gccatagcca tctggtaaac cggtcagcac
     3901 gccagattta cggcagcgca gcatatccgg tgagtaaaca tcaaatacgc cctggttatg
     3961 ggttttacgc agatcggtaa acagatattc aaattcactg tccatttcac ggccataggc
     4021 gtggaatgaa cttttaatca tattaatgcc accgaacggg tgtagcgcac gtttcaacgg
     4081 cgcatccgtt tgcaggccaa caattttttc cagcggctgg ttaatatatc ccgcatcatg
     4141 agcggtaatt gtggtggcaa tattggtatc gaaatcaacc ggcgcgtggg ttgcgttttc
     4201 gatacggata ccttccatta ctttttccca caattccgtg gtggcaggcg tcgcttcagc
     4261 gaggaaagat tcatcgcctt catacggtgt atagttatgt tgaataaaat cgcggacatt
     4321 aatttcgttt ttccagtccg tacctttaaa gccaagccat gcgtcggcgt acagcttatc
     4381 gctggtatca atatctacct tcatgaaaaa taatctctct acaatacttc aactaaatta
     4441 tgcaaattct gcgggcgcgt taactttgcc taaatgaatg gcatccaaag caatcatttt
     4501 ttcttcgtta gtcggaataa cagcgcaaat gacacgcgca ttttcactgg aaacaattcg
     4561 ctcaccacag gagttagagc gattattcat gtctgtatca atctctacgc ctaatacagc
     4621 caaatgttcc atgaccagac gacgaattaa gcttgaattc tctcctattc cgccggtgaa
     4681 tataattcca tccaggcgac gtaatgaagc tgcgtgtccg gcaatatgac gggcaattcg
     4741 gtgaacaaag gttttaattg ccagttgcgc gcgttcgtga ccttcatgcc aggctttttc
     4801 cagaacacgt aaatccgaag aaagaccgga aatacctaat aatcccgact ctttattcac
     4861 tacgcgttcc aggtcaccca agctctggtt ggtttggctg gcgacccagg acatcgcacc
     4921 aaaatcgaca tcgccactgc gggtacccat catcaagcct tccagcggcg tcattcccat
     4981 tgaggtgtca acactctgac cgttgcgaac tgcgcagatt gacgcgccat tgccaagatg
     5041 cgccacaacc aggccggagt catcttccgc tagattcagc aaagaatgtg cgcgctggga
     5101 aacatagcgg tgcgacgtgc cgtggaaacc ataacggcgt acacctaact cttcataata
     5161 tttccacggc aggccgtata aataagcttc cggagccatc gtctggtgga aactggtatc
     5221 aaataccgcc acctgagtta cgcccggaaa taattgctgc gccgattcaa taccacttaa
     5281 attggcgtaa ttatgcaggg gtgacagtgg agaaacgcga cggatattat caatgacctc
     5341 atcggtaata atggcggact cggtaaaaat actgccgccg tgagcgatgc ggtggccaat
     5401 taaggccact ctgtcattta aattccgttt ttccagttca aatgcaattg ccttcaatgc
     5461 accttcgtag ctgtggtgag ccagcggtgc tggctctccc ccatttacgg ataagaatgc
     5521 attttccgag ttaataccgt cggcaatacc tgacattaat acttcacagt cgctggcatc
     5581 gagtacggaa aacttaatcg aagacgaacc acagttaata accaaaacaa ccggaaattc
     5641 attcatctct tttctcatcc tgagttacgg attaaaacag tttgtatacg atgttcagga
     5701 tggtcagcag accaatcacg gtaacaaaca cgttatccag acgaccacgg tatttcgcca
     5761 gagacggcgc tttacggatg gcatacatcg gcaacaggca cagcagggat gcgataatcg
     5821 gtgcgcccat ggcttcaata aggtcgagga tgttcgggtt ggcgtaggca acaacccagg
     5881 tggagcccat gatgaagatc atgctgatag tgttcagttt acccagcgac actttagttt
     5941 tgtcgccttt ataaccgaac ttcagaatca gaccattcaa gccttccagc gtccccagat
     6001 agtgaccgaa gaaagatttg aagatagcca cgagtgcgat gatggaagcc gcatattcca
     6061 gtgtaatcgc gaacgttgtt ttggtaccgg tcatggacgc aaagtggtta gccagataag
     6121 aaagcactgg aatattctgc gctttggctt ccgccatgtt ggccggagac agcgtaaaca
     6181 ggcagctaaa ggcaaagaac atcaccactg caaccatcag catgctggca cgagaaatga
     6241 tttgggaaca tttacgttcg gtgaagtcgc gaccgaagtc tttctcatac tcttcacgtt
     6301 tagaaaccac gaaggaagag acgattggcg agaagttaaa ggagaaaacc atgatggaaa
     6361 tccccagcca gacagtgatc aggataccgt catgaccggt taacgacagc gaaccgaggt
     6421 caacctggtc gataactgca gagttccagt aagggatcag cgacagagaa atcagcacca
     6481 ggctggcgat aaacggccat accaggtagc tcatcacttt aaccatcaga tccttaccaa
     6541 accagatgac gaaagccatc agcagcaaca ggaacagcgc cacaaagccg cgattcagcg
     6601 gtgcaaatcc gagctggttt tcccagaacg tcataaaggt attggtaata gtaacgccat
     6661 aaatccacag cagtgggcaa atcgcgaaga agtacaggaa cgtgataacc acgccgccag
     6721 ttttaccaaa atgctcttcc accgtttccg taatgttgcc ggaagggtta gagccagaaa
     6781 gacacagacg cgccagcgcc cggtggcaat aaaatgcgat ggggtatgcc aataccaaca
     6841 tcagaagaat cgggatcagt ccgccaaaac ctgcgcggat agggaagaac agcaccccgg
     6901 cgccgattgc cgtaccaaac aagcctaacg tccatgtggt atctgattta cgccaggacg
     6961 attgttttgt ctggctggat acaatgctat ctgaagtact catatcctat cctcaacgaa
     7021 ttaattaagc gtcaacgaaa ccggtgattt gagagacgcg agaaagatcg atattgccgc
     7081 cggaaataat actgacggtt tttctgtttt gaatatattg gtctaattta ccgcttaata
     7141 atgcagcaca tgccagagcg cctgcgcctt cggtgacgac tttattgcgc tgaattaagg
     7201 caatcatact gtttctgatt tcgtcttcgc tgaccagcac gatgtcatcg actaattcac
     7261 gaacgatttc gtaagttaaa ttacccgggc gggagacatc acaaccatcc gccagggtgc
     7321 cggtagttcg gtgcgtggtt atttctccgg agtggaaaga agccgccatg ccgtgaacgt
     7381 tttctgactg tacgccaata acacgaatgg tcgggttaat agatttaatt gccaccgcaa
     7441 taccagcaat taaaccacca ccaccaattg gcacaatcac gttatcgaca tcatagagat
     7501 cttccataat ttccagacca atcgttccct ggccagcaat cactttcgga tcatcgtaag
     7561 gtgggataaa aatacgacct tccatttcga caatttcgct cactttagcg atagtgtcgt
     7621 tgaagttatc accatgcaga acgacttctg cggagtagtc gcacgttgcc gctactttgg
     7681 attttggcgc accttttggc atcaccactt taccgtcgat acccagcatc gcgcaggaga
     7741 gcgaaacccc ttgcgcatgg ttgcccgcag aacaggccac cacgcctttg cgtttttccg
     7801 catcggtcag tgaacttaat ttattaaatg cgccacgaat tttgaatgaa cccgtacgct
     7861 gcatattttc aaacttcagg aatatttcac ctttgcaacg ttcactaaaa tagttggagc
     7921 gaggcatgcc tgttttataa attcgcccag ccagtcgttg tttcgcttca ataatatcat
     7981 caatagcaac tggcagatcg tatgtaatat gcattataaa acctcttcgt ctgaattaaa
     8041 tatgtaggta accgtaaccg acacctgcaa aacagacagg tggattattt atgtttaaat
     8101 aaaaacaaat aactaaccaa cttctattaa tagccttcgt ctacacccat tataagatga
     8161 atactctttg gctaattcca ccaaaaccga tgctgctttt ttaatacgat aatttttcga
     8221 ccataccgcg gcatattgtg ccacaggtaa tgtttcttca accggaatag taataaattg
     8281 atttgaacca aaaggtgacg tcatatcaca aggaattaca gttaagaaat cagcattgag
     8341 aacaagatta taaattgtca cgactgagtc ggttttaacg atgttttcaa tactgatgcc
     8401 atttctttgt aacgtagtaa gaagctcgct gtagtacccc atattggttt gtggcaacac
     8461 ccactgttcg ttcttcaacg actccagcgt ggtggtgccg gtgcatgttc gggacttact
     8521 ggctaccagc acaaactcgg actcgaacag cggctcaaca tgtaaatcct gaagcttcat
     8581 ttctgcactt aacgtaccaa tcgcaaaatc cagtcgaccg tcgcggattg ccggtaagaa
     8641 cgaagacagt tgcgcttcat acatagaaac ctgcgctttc gggaacacct ctttgaactt
     8701 gttgatcatc cctgacataa aagtaaaacc aatcaatgaa ggaaaaccaa atgagacttc
     8761 caccaccgcc tcagaagaca taccgcttat ctcattaacc atatttttca tttcacgggt
     8821 aatggattcg gaacgggaga gtaacaattg accggcaggt gttaatgtta caccggtatt
     8881 tttccgcacc actaattcca caccaaaata atcttcaata tcgttaatga ttttactgac
     8941 ggccggttga gttaacccta attcttttgc agccgagccg atagagccac ttctaatgac
     9001 ttcctgaaag actaccaggt gctgcgtttt cggaagaaga atagtgctca taacgaccta
     9061 cgttaattac ctcattgacg gcatgaagtg tatcaaaatg aaatgaacag gatatgtgcg
     9121 accactcaca aattaacttt cattactttc cagggtatcg ttattacaat caaatatctt
     9181 taaatatcaa caagttaaag cataaaaatc agcataaacc ctgattttta tcaaaaaaaa
     9241 tgacggggat aaccatattt tatggcgata acatcattcg ttatgtggtt aatacaaaaa
     9301 aggggctgag accatatttc aagcaattac cggataatta ccaggcaaaa tttgagttaa
     9361 atttaatgag caagttctca aattttatta taaataaacc attttcagcg ataaatactg
     9421 cggcacgtca cattttttca cgctatttgt tggagaacaa acatttattt tatcaatatt
     9481 ttaaaatttc gaatacaggt attgatcatc tcgaacaatt gattaacgtc aactttttct
     9541 cttctgacag gacgtcattt tgtgaatgca atcgttttcc ataaattctt ctcccctcat
     9601 aggcgacgaa tagcattttg tgttgaggat cacaaaacga ataattgctg gtcgccgcga
     9661 taaggtcaga cgaagtcagc aaggggaatt ttcactgtgc tttacatcag cgtaggacac
     9721 agaatgttgc ttcgtttact gtaacgccgg gtaaatgagc gttttttgat agtgcgtaag
     9781 tgtcgtgcga ggaaaataag catctattat tgtttgtcat gacgacaagg caggcatcaa
     9841 tgaaaggctt cccaattgca catatttttc acccttcaat cccgccaatg cacgcagtgg
     9901 ttaacaatca caatagaaat attgattatt ggacggtaaa aagaaagttt gcagaaattg
     9961 tctccaccaa tgacgttaaa aaaatttaca gtataagtaa tga
//
LOCUS       DADMHM010000144         9945 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.146, whole genome shotgun sequence.
ACCESSION   DADMHM010000144 DADMHM010000000
VERSION     DADMHM010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9945)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9945)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9945
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.146"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..197
                     /locus_tag="JN125_003057"
     CDS             <1..197
                     /locus_tag="JN125_003057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707232.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NAD-dependent dehydratase"
                     /protein_id="HAY8872750.1"
                     /translation="AWLTDEDIIDYELTSRNEPFKGTIVSRKSVAALITDIIDKPEKH
                     IGENIGINQPVTDGDKPLFM"
     gene            507..1235
                     /gene="mpaA"
                     /locus_tag="JN125_003058"
     CDS             507..1235
                     /gene="mpaA"
                     /locus_tag="JN125_003058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415842.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein tripeptide amidase MpaA"
                     /protein_id="HAY8872751.1"
                     /translation="MTVTRPRAERGAFPPGTEHYGRSLLGAPLIWFPAPAASRESGLI
                     LAGTHGDENSSVVTLSCALRTLTPSLRRHHVVLCVNPDGCQLGLRANANGVDLNRNFP
                     AANWKEGETVYRWNSAAEERDVVLLTGDKPGSEPETQALCQLIHRIQPAWVVSFHDPL
                     ACIEDPRHSELGEWLAQAFELPLVTSVGYETPGSFGSWCADLNLHCITAEFPPISSDE
                     ASEKYLFAMAYLLRWHPKDAIRPS"
     gene            complement(1210..2175)
                     /gene="ycjG"
                     /locus_tag="JN125_003059"
     CDS             complement(1210..2175)
                     /gene="ycjG"
                     /locus_tag="JN125_003059"
                     /EC_number="5.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707230.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-Ala-D/L-Glu epimerase"
                     /protein_id="HAY8872752.1"
                     /translation="MRTVKVFEEAWPLHTPFVIARGSRSEARVVVVELEEEGIKGTGE
                     CTPYPRYGESDASVMAQIMSVVSQLEKGLTREELQKILPAGAARNALDCALWDLAARK
                     QQQSLADLIGITLPETVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNHLISER
                     MVAIRTAVPDATLIVDANESWRAEGLAARCQLLADLGVAMLEQPLPAQDDAALENFIH
                     PLPICADESCHTRSNLKALKGRYEMVNIKLDKTGGLTEALALATEARAQGFSLMLGCM
                     LCTSRAISAALPLVPQVSFADLDGPTWLAVDVEPALQFTTGELHL"
     gene            2294..2800
                     /gene="tpx"
                     /locus_tag="JN125_003060"
     CDS             2294..2800
                     /gene="tpx"
                     /locus_tag="JN125_003060"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HAY8872753.1"
                     /translation="MSQTVHFQGNPVTVANSIPQAGSKAQTFTLVAKDLSDVTLGQFA
                     GKRKVLNIFPSIDTGVCAASVRKFNQLATEIDNTVVLCISADLPFAQSRFCGAEGLNN
                     VITLSTFRNAEFLQAFGVAIADGPLKGLAARAVVVIDENDNVIFSQLVDEITTEPDYE
                     AALAVLKA"
     gene            complement(2844..4385)
                     /gene="tyrR"
                     /locus_tag="JN125_003061"
     CDS             complement(2844..4385)
                     /gene="tyrR"
                     /locus_tag="JN125_003061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator TyrR"
                     /protein_id="HAY8872754.1"
                     /translation="MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFA
                     ELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKV
                     DMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLME
                     ITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVE
                     QAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELF
                     GHAPEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVR
                     VICATQKNLVELVQKGMFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQ
                     GVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATV
                     AVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ
                     KKNEE"
     gene            complement(4533..5594)
                     /locus_tag="JN125_003062"
     CDS             complement(4533..5594)
                     /locus_tag="JN125_003062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01620 family protein"
                     /protein_id="HAY8872755.1"
                     /translation="MTEPLKPRIDFDGPLEVDQNPKFRAQQTFDENQAQNFAPATLDE
                     APEEEGQVEAVMDAALRPKRSLWRKMVMGGLALFGASVVGQGVQWTMNAWQTQDWVAL
                     GGCAAGALIIGAGVGSVVTEWRRLWRLRQRAHERDEARDLLHSHGTGKGRAFCEKLAQ
                     QAGIDQSHPALQRWYASIHETQNDREVVSLYAHLVQPVLDAQARREISRSAAESTLMI
                     AVSPLALVDMAFIAWRNLRLINRIATLYGIELGYYSRLRLFKLVLLNIAFAGASELVR
                     EVGMDWMSQDLAARLSTRAAQGIGAGLLTARLGIKAMELCRPLPWIDDDKPRLGDFRR
                     QLIGQVKETLQKGKTPSEK"
     gene            complement(5591..6988)
                     /locus_tag="JN125_003063"
     CDS             complement(5591..6988)
                     /locus_tag="JN125_003063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005126510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcjX family protein"
                     /protein_id="HAY8872756.1"
                     /translation="MKRLKNELNALVNRGVDRHLRLAVTGLSRSGKTAFITAMVNQLL
                     NIHAGARLPLLSAVREERLLGVKRIPQRDFGIPRFTYDEGLAQLYGDPPAWPTPTRGV
                     SEIRLALRFKSNDSLLRHFKDTSTLYLEIVDYPGEWLLDLPMLAQDYLSWSRQMTGLL
                     NGQRGEWSVKWRMMCEGLDPLAPADENRLADIAAAWTDYLHHCKQQGLHFIQPGRFVL
                     PGDMAGAPALQFFPWPDVDTWGESKLAQADKHTNAGMLRERFNYYCEKVVKGFYKNHF
                     LRFDRQIVLVDCLQPLNSGPQAFNDMRLALTQLMQSFHYGQRTLFRRLFSPVIDKLLF
                     AATKADHVTIDQHANMVSLLQQLIQDAWQNAAFEGISMDCLGLASVQATTSGIIDVNG
                     EKIPALRGNRLSDGAPLTVYPGEVPARLPGQAFWDKQGFQFEAFRPQVMDVDKPLPHI
                     RLDAALEFLIGDKLR"
     gene            7143..8141
                     /locus_tag="JN125_003064"
     CDS             7143..8141
                     /locus_tag="JN125_003064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family transcriptional regulator"
                     /protein_id="HAY8872757.1"
                     /translation="MSPTIYDIARVAGVSKSTVSRVLNKQTNISPEAREKVLRAIEEL
                     QYQPNKLARALTSSGFDAIMVISTRSTKTTAGNPFFSEVLHAITAKAEEEGFDVILQT
                     SHNPAEDLQKCESKIKQKMIKGIIMLSSPADESFFAQLDKYDIPVVVIGKVEGQYAHV
                     YSVDTDNFGDSIALTDTLIESGHQNIACLHAPLDVHVSVDRVNGYKQSLAAHNIAVRD
                     EWIVDGGYTHETALQAARELLSQSPLPEAVFATDSLKLMSIYRAAAEKNIAIPQQLAV
                     VGYSNETLSFILTPAPGGIDVPTQELGQQSCELLFRLISGKPSPQNITVATHMTLK"
     gene            complement(8252..9157)
                     /gene="ompG"
                     /locus_tag="JN125_003065"
     CDS             complement(8252..9157)
                     /gene="ompG"
                     /locus_tag="JN125_003065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monomeric porin OmpG"
                     /protein_id="HAY8872758.1"
                     /translation="MKKLLPCTALVMCAGMACAQAEEKNYWHFNIGAMYEIENVEGYG
                     EDMDGLAEPSVYFNAANGPWRIALAYYQEGPVDYSAGKRGTWFDRPELEVHYQFLEND
                     DFSFGLTGGFRNYGYHYVDEPGKDTANMQRWKIAPDWDVKLTDDLRFNGWLSMYKFAN
                     HLNTTGYADTRVETETGLQYTFNETVALRVNYYLERGFNMDDSRNNGEFSTQEIRAYL
                     PLTLGNHSLTPYTRIGLDRWSNWDWQDDIECEGHDFNRVGLFYGYDFQNGLSVSLEYA
                     FEWQDHDEGDSDKFHYAGVGVNYSF"
     gene            complement(9202..>9945)
                     /locus_tag="JN125_003066"
     CDS             complement(9202..>9945)
                     /locus_tag="JN125_003066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HAY8872759.1"
                     /translation="RVNWAAHILGLREYLKRKPGALSGGQRQRVALGRAIVREAGVFL
                     MDEPLSNLDAKLRVQMRAEISKLHQKLNTTMIYVTHDQTEAMTMATRIVIMKDGIVQQ
                     VGAPKTVYNQPANMFVAGFIGSPAMNFIRGTIDGDKFVTETLKLTIPEEKLAVLKTQG
                     SLHKPIVMGIRPEDIHPDAQEENNISAKISVAELTGAEFMLYTTVGGHELVVRAGALN
                     DYHAGENITIHFDMTKCHFFDAETEIAIR"
BASE COUNT         2452 a         2719 c         2351 g         2423 t
ORIGIN      
        1 ctgcctggct gactgatgaa gatattattg attatgagct tacctcacgc aatgaaccat
       61 tcaaaggtac gatcgtatca cgtaagagtg tcgcagcatt aatcacagat atcatcgata
      121 aacctgagaa acacattggt gagaatatag gtatcaatca acccgtgact gatggtgaca
      181 agccattatt catgtaaatc aattacatag ttaccatcgt aatgtactat gtgcagtacg
      241 atttattaaa cttattaagg tgaactgatc aatccgatgc gattaacatg tgtagaacca
      301 gtaagaataa aatacgccat gtatataaca ttacgactta catctaagtc agcataattc
      361 taatatctgc acatcaataa aaatgcaaac aacttccggc aaaaaaagtg atacaagatc
      421 gatgacatag cgttgaagaa aaggatttga taatccgcaa aatttgcaca acactgcctg
      481 taatacttcc tgaaccagag acgatcatga ccgtaacccg cccacgcgcc gaacgcggcg
      541 catttccgcc cggaacagaa cattacggac gttcattatt gggcgcgccg ttaatctggt
      601 ttcctgcccc tgcagccagc cgcgaaagtg gtttgattct ggctggcact cacggtgatg
      661 aaaactcttc ggtcgtcacg ctctcctgtg ctctgcggac gttgacacct tctttgcgcc
      721 gccatcatgt ggtgctgtgt gtgaatcctg acggctgcca gctggggtta cgggccaatg
      781 ctaatggtgt ggatttaaac agaaactttc cggcggcgaa ctggaaggaa ggtgaaacgg
      841 tttatcgctg gaacagcgcc gctgaagaac gtgatgtcgt attactgaca ggtgacaaac
      901 ctggctcaga acctgaaacc caggcgctgt gccagcttat acaccgcatt caacctgcct
      961 gggtggtctc attccacgat ccactggcct gtattgaaga tcccagacac agcgaattag
     1021 gcgaatggct ggcccaggcg tttgaattgc ctctggtaac cagcgtcggt tatgaaacgc
     1081 ctggctcttt cggcagttgg tgtgcagatc tcaacttgca ttgcatcacc gcagagtttc
     1141 cgcccatctc ctccgacgaa gccagcgaaa aatatctctt tgcgatggca tacttgctgc
     1201 gctggcatcc taaagatgca attcgcccgt cgtgaactga agcgccggtt ccacatctac
     1261 cgccagccag gtcggtccgt caagatcggc gaaactgacc tgcggcacca gcggtaaagc
     1321 ggcgctaatg gcacgagagg tacacaacat gcagcccagc atcagactga aaccttgtgc
     1381 acgcgcttca gtcgccagcg ccagcgcttc cgtcagacca ccggttttat cgagcttaat
     1441 gttaaccatc tcatagcgcc ctttcagcgc cttcagattg ctacgtgtat gacaactctc
     1501 atcagcacaa atcggcaacg gatgaataaa attctccagc gccgcatcgt cctgcgcagg
     1561 aaggggttgt tcaagcatcg caacgcctaa atccgccaat agctggcaac gcgccgccaa
     1621 cccttctgca cgccaggatt catttgcatc aacgatcagc gtcgcatcgg gcacagctgt
     1681 gcgaattgcc accatccgct cactaataag atggttatcc agcttcactt tcagtaattt
     1741 cgcgcctgcc tgccagagtg ttgatgcact attggccatc tgatcaggcg taccgatgac
     1801 taccgtctgt gcagtgataa ctgtctcggg aagcgttatg ccgatcaaat cagccagcga
     1861 ttgctgctgt tttcgcgcgg ccagatccca caatgcacaa tccagcgcat tacgtgctgc
     1921 gccggcaggg agaatttttt gcaactcctc ccgtgtcagc cctttctcta attgcgacac
     1981 gacgctcata atttgcgcca ttaccgaggc atcactttct ccataacgcg gatacggcgt
     2041 gcattcgccg gtgcctttaa taccctcttc ttccagttca accaccacca cgcgcgcttc
     2101 actgcgactt ccccgggcaa tcacaaacgg ggtatgtaag ggccaggctt cctcaaatac
     2161 cttaacggtt ctcatcttta ctccttgttg tcgcggtggt ctgcggatta agcgcaaata
     2221 gcgtttgctg tgttattgac agttagcata aactaggtgt gacgttaact atatgtaaac
     2281 aggaaagata atcatgtcac aaaccgttca tttccagggc aacccggtta cagtcgccaa
     2341 ttccatcccg caggcgggta gcaaagcgca gacttttact ctcgtggcaa aagatctgtc
     2401 tgacgtcacc ctcggtcagt ttgcgggtaa acgcaaagtg ctgaacattt tcccgagtat
     2461 tgataccggt gtttgcgccg catcagtacg taagtttaac caactggcaa ccgagatcga
     2521 caacaccgtt gtgctgtgta tttctgccga tctgccgttc gcccagtctc gtttctgcgg
     2581 cgcagaaggt ctgaacaacg ttatcaccct ctccactttc cgtaacgctg aatttctgca
     2641 agccttcggt gtggcaattg ctgatggccc actgaaaggt ctggcagcgc gtgccgttgt
     2701 ggttattgac gaaaatgaca atgtgatttt cagccagctg gtggatgaaa tcaccaccga
     2761 gccggattac gaagcagctc tggctgtact gaaagcataa gttaatatgc ctgatggtgt
     2821 tgcaccatca ggcatattcg cgcttactct tcgttcttct tctggcttaa gccatattcc
     2881 cgcaacttat tggcaatcgc ggtatgtgaa acgccgagac gttttgccag tttgcgcgtg
     2941 ctgggataat tgcgataaag ctgggttaat accgagcgtt caaaacggct ggtgatttcg
     3001 tccagcgaac cttccatcgc atcttcgccc acggctaccg ttgcggcgtc ataatccggc
     3061 aacaaaatat cctgtggacg cagctcataa ccgtccagtt gtgtcagtgc gcgatagata
     3121 gcgttcttta actgccgcac atttcccggc cacgcataac gcgtaagtac agtattcagg
     3181 tcagcggcca gtttcggacg cggcacgccc tgctcgtcgg caaagcgggc gacgaacagc
     3241 tcagttaacg gcatgatgtc ctgcggacag tcacgtagcg gcggcagatt gagcgtcaac
     3301 acgttcagac gataatagag atcttcacgg aacatgcctt tttgcaccag ttcgaccaga
     3361 ttcttctgcg tagcgcaaat cacccgcaca tcgacatgca cctcatggtc ttcgccaacc
     3421 cgacggaaag tgccatcatt aagaaaacgc agtaatttcg cctgcatccg tggtgacatt
     3481 tcccctattt catccaacag caccgaacca ccgttcgcct gctcaaagaa tcctttcttc
     3541 ccttccggag catgaccaaa cagttcactc tcgaccgcat cttccggtat agacgcacag
     3601 ttcagcgcca ggtaaggttt gcccgctctg gggcttgcct gatggcaggc gtaggcaaag
     3661 agatctttac ctgtacctgt gtcacccgta atcagcagcg gcgcgcttag catcgccagt
     3721 ttctgcgcct gttcgacaac atgcttcatt ttcgggctga cggcgacaat ttgactgaag
     3781 gcgctgacgt cctgggcggc gacattttgc aactggcggc ccatacgaat cgttgatcgc
     3841 aacatcacca ccgcaccggt caggacgtgt tgatcatttt catcctgaag ataaacaggc
     3901 gtaatctcca tcaggaaatt ctgcccatta ataacgacat gctcgttatg cgaatcttgc
     3961 ggttcgcttt ccagccaacg taaaaaatta aagccgttaa tcaattgtgc ggcggtatgg
     4021 ttgcgcaggc gatccaattt ttgcccaaaa agctgacagc tcgccgggtt cgccatatcc
     4081 actttgcttt tcatatcgac agagagcaca ggttcgggca acgcctccag taacgcgctc
     4141 aacgccagat gctcacgttc ggaaggcatc cacgggacag tacgcacatc ggtaacacct
     4201 gcaatacggc gtatttcggc catcagactg ctgaaactct caaactccag ttcagcaaaa
     4261 ttgaggtaga ttcgcccaat gggatcaatc tcaataccgc gtaaatcaat gcctcttagc
     4321 acgagtagat cgagtaattc gcgggtcaga ccgagtcggt cttcacaaaa gacttccaga
     4381 cgcatgggaa ccttcacctg aaaaaagaac aattaatatg atgatatgac actatttgga
     4441 tagcaggaag gtttctgtca acaatcattg acacaaagac ggaaaaacgg gcacttcggc
     4501 gtaaagatat ccggtcagca cccgatattg cattattttt cgctgggcgt tttgcctttt
     4561 tgcagcgttt ctttcacctg accgataagc tgacgacgga aatccccgag gcgaggtttg
     4621 tcatcgtcaa tccacggcag cgggcggcaa agctccatag ctttaatccc gagtcgtgcc
     4681 gtcagaagtc cagcaccaat tccctgagct gcgcgggtag acaaacgagc agcgagatct
     4741 tgcgacatcc agtccatccc cacttcgcgc accagttcgc tggctccggc aaaagcgata
     4801 ttcagcaata ccagcttaaa cagacgcaaa cggctgtaat accccagttc aatgccatac
     4861 agcgtggcga tgcgattaat taaacgcaga ttgcgccagg cgataaacgc catatcgacc
     4921 aacgccagcg ggctgaccgc aatcatcaac gttgattccg ccgccgaacg gctgatttcg
     4981 cgccgcgcct gggcatctaa aactggctgg accaaatgcg catacaaact gaccacttca
     5041 cggtcgtttt gcgtttcatg gattgaggca taccagcgtt gcagcgctgg atgagactga
     5101 tcaatacccg cctgctgcgc cagtttttcg caaaatgcgc ggcctttgcc cgtgccgtgg
     5161 ctgtgcaaca aatcgcgcgc ttcgtcgcgt tcatgggcgc gctgtcgcaa gcgccataag
     5221 cgccgccact ctgttaccac agaacctacg ccagcgccga taatcaatgc cccagcggca
     5281 catccaccca gcgccaccca gtcctgagtt tgccaggcat tcattgtcca ctgtacaccc
     5341 tgcccgacaa cgcttgcgcc aaacagagcc agcccgccca tcaccatttt gcgccacagg
     5401 ctgcgtttcg gacgtaacgc tgcatccatt accgcttcaa cttgcccctc ttcttcaggc
     5461 gcttcatcga gcgtggccgg ggcaaaattt tgcgcctgat tttcgtcaaa ggtctgctgc
     5521 gccctgaatt ttggattctg atcgacctcc agcggaccgt cgaaatcaat acgtggtttt
     5581 aacggttcgg tcatcgcaat ttatctccta ttaaaaattc cagcgcggca tcaagacgaa
     5641 tatgcggcag cggtttgtcg acatccatca cctgcgggcg aaacgcttca aactggaacc
     5701 cttgtttgtc ccagaacgcc tgaccgggca aacgcgcagg aacttcaccg ggataaacgg
     5761 tgagtggcgc accatcgctg agccggttac cgcgcaatgc cggaattttc tcgccgttaa
     5821 cgtcaataat gccgctggtg gtcgcctgca ccgaggccag ccccagacaa tccatactaa
     5881 tcccttcaaa cgccgcattt tgccaggcat cctgaatcag ttgttgcagt aatgaaacca
     5941 tattggcgtg ctgatcgatg gtcacatggt ccgctttagt ggcagcaaac aatagcttat
     6001 cgataaccgg cgaaaacaaa cgccggaaca aggtacgctg cccgtagtgg aaactttgca
     6061 tcagctgcgt cagtgccaga cgcatatcat taaatgcctg tggcccactg ttgagaggtt
     6121 gcaggcaatc aaccagcaca atctggcggt caaagcgcag aaaatgattc ttatagaacc
     6181 ccttcaccac cttctcgcag taataattaa accgctcgcg cagcattccg gcattggtgt
     6241 gcttatcggc ctgcgccagt ttggactcgc cccaggtatc gacatccggc cacgggaaga
     6301 attgcagcgc gggcgcacct gccatatctc ctggcaagac aaagcgccct ggctgaataa
     6361 agtgcagccc ctgctgttta cagtggtgga gataatcggt ccacgcggcg gcaatgtctg
     6421 ccagccggtt ttcgtcggca ggtgctagcg ggtccagccc ttcgcacatc attcgccatt
     6481 tgaccgacca ttcgccgcgc tgaccattga gtaagcccgt catctggcgt gaccagctta
     6541 aatagtcctg cgccagcatc ggcaggtcga gcaaccattc gccgggataa tccacaatct
     6601 ccagatacag cgtggaggtg tccttgaagt ggcgtagcag cgaatcgttc gatttaaaac
     6661 gtagcgccag gcggatttca ctgacgccgc gcgttggcgt cggccaggcg ggaggatcgc
     6721 catataactg cgccagtcct tcatcatatg tgaagcgcgg aatgccaaag tcacgctgag
     6781 gaatgcgttt tacgcccagc aggcgctctt cacgcaccgc gcttaacagc ggcaagcgtg
     6841 ctccggcgtg aatattgagc aactgattga ccatcgcagt gataaacgct gttttgccgc
     6901 tgcggcttag tccggttacg gcgaggcgca gatgtctgtc gacaccccga ttcaccagcg
     6961 cattaagttc atttttaagt cgcttcattg ctgtcctgtg ctgctctgaa gaccagaaaa
     7021 aaatcattcg taaggatatg aatgtggggg ccaggccatt gattatcaac tgcccgtgtt
     7081 gtcatcgacg ggcgaactcc ataagatgtg tagcattcac gttcggacgg agttcctgac
     7141 ctatgtcccc tactatttat gatattgcca gggttgcagg cgtatcaaaa tccaccgtat
     7201 cacgcgtgct gaataagcaa actaatatct ccccggaagc gcgcgaaaaa gtgttacggg
     7261 ccattgaaga attacagtat cagccaaaca agctggcccg cgcgctgacc tcttcgggtt
     7321 ttgatgccat tatggtgatt tctacccgtt cgaccaaaac tacggcgggt aatccgtttt
     7381 tctctgaagt tttgcatgcc atcaccgcca aagctgaaga ggaaggtttc gacgtgatat
     7441 tgcagacgtc gcacaatccg gcagaagact tacaaaaatg tgaaagcaaa attaagcaga
     7501 aaatgattaa aggcattatt atgctaagtt ctccagcgga tgagtcattt tttgcccaac
     7561 ttgataaata cgatattcct gtcgtggtga ttggcaaagt tgaaggtcaa tatgcccatg
     7621 tttattctgt cgataccgat aattttggcg acagcattgc gttgaccgat acattaattg
     7681 aaagtgggca tcaaaatatt gcctgcctgc atgctccgct tgatgtccat gtttcagtgg
     7741 atcgggtaaa tggttataag cagagcctgg ctgcgcataa tattgcagtg cgtgatgaat
     7801 ggattgttga cggtggttat acccatgaaa cagcactgca agccgcgaga gaattattaa
     7861 gccagtcacc gttgcctgag gcggtgtttg ccactgacag tctgaaatta atgagtattt
     7921 atcgtgcggc ggcagagaaa aatattgcta ttccgcagca gttagcggtg gtgggttata
     7981 gtaatgaaac gctgtcgttt attttaacac ctgcaccggg cggcatcgat gttccgacgc
     8041 aggagttagg tcaacaaagc tgcgagttat tattccgctt aatttctgga aaaccgtcac
     8101 cacagaatat taccgttgcc acgcatatga cgctgaaata aataccagct accttgcctg
     8161 aatgccggat gcgatgctag cgcatcttat ccggcctaca tttatagatc ggataaagta
     8221 ctcgcgccgc atccggcaat ttagcccatt atcagaacga gtaatttacg ccgacacctg
     8281 cataatggaa tttatcactg tcgccttcgt cgtgatcctg ccactcaaac gcgtattcca
     8341 gcgaaacgga aagtccgttc tggaaatcat aaccgtaaaa taaacctaca cggttaaaat
     8401 catggccttc acattcaata tcatcctgcc agtcccagtt actccagcga tccagcccaa
     8461 tgcgcgtata cggcgtcaac gagtggttgc cgagcgtcag cggcaaatag gcgcgaattt
     8521 cttgcgtgga aaactcaccg ttattgcggc tgtcgtccat attgaagccg cgctcgagat
     8581 aatagttcac tcgcaaggca accgtttcgt tgaaggtata ttgcagacct gtttccgttt
     8641 cgacacgggt atcagcgtaa ccggtagtgt tcagatggtt ggcaaattta tacatcgaca
     8701 accaaccgtt gaaacgtaaa tcgtcagtca gtttcacatc ccagtctggc gcgattttcc
     8761 agcgctgcat attcgccgtg tctttacccg gttcatcaac gtagtgataa ccataattac
     8821 ggaaaccgcc ggtcaggccg aaactgaaat catcgttttc gaggaactga taatgcacct
     8881 ccagctccgg gcgatcaaac cacgttccac gtttacccgc gctataatct accggccctt
     8941 cctgataata ggccagagca attctccacg gcccgttggc ggcattaaaa tagactgaag
     9001 gctccgccag cccatccata tcttcgccat aaccctcgac gttttctatt tcgtacatcg
     9061 cgccgatatt aaagtgccag tagttctttt cctcggcctg tgcgcaggcc attcccgcac
     9121 acatcaccag tgcggtacag ggtaataact ttttcattat tgttccttgt attattctgg
     9181 gggaatgcct tccccctgta tttagcgaat tgctatttcc gtttctgcat caaagaaatg
     9241 acatttcgtc atatcaaaat gaatagtgat attttctcct gcatgataat catttaacgc
     9301 accagcacgg accactaact cgtgcccccc aaccgtggtg tagagcataa attccgcacc
     9361 ggttaattct gccacgctaa ttttggcgga aatgttattt tcctcttgcg cgtccggatg
     9421 aatatcttcc ggacgtattc ccatcacgat gggcttatgc aaacttccct gtgttttcag
     9481 aaccgctaat ttctcttcgg gaatggttaa tttaagcgtt tccgtaacga atttatcgcc
     9541 atcgatcgtg ccacgaataa aattcatcgc cggtgatcca ataaatccgg caacaaacat
     9601 attcgctggt tggttataaa ccgttttcgg cgcaccaact tgctgaacaa tcccatcctt
     9661 cataatcaca atccgcgtcg ccatggtcat cgcttcggtc tgatcgtggg tcacgtagat
     9721 catggtggta ttcagcttct ggtgtagctt gctgatctct gcgcgcattt gcacgcgcag
     9781 cttggcatca aggttagaga gcggttcatc cattaaaaac acgcccgctt cgcgcacaat
     9841 cgcccgcccg agcgccacac gctggcgttg cccgccggaa agcgcgcccg gcttgcgttt
     9901 caggtactca cgcaggccga gaatatgcgc cgcccagttc acccg
//
LOCUS       DADMHM010000145         9881 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.148, whole genome shotgun sequence.
ACCESSION   DADMHM010000145 DADMHM010000000
VERSION     DADMHM010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9881)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9881)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9881
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.148"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(295..1488)
                     /locus_tag="JN125_003067"
     CDS             complement(295..1488)
                     /locus_tag="JN125_003067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8872760.1"
                     /translation="MSPGIEDTPQKTLSCWPLAFSAGLLGIGQNGLLVVLPVLVIQTN
                     LSLSVWAALLMLGSMLFLPSSPWWGKQISRTGSKPVVLWALGGYGISFTLLGLGSVLM
                     ATSAITTAVGLGILIIARIAYGLTVSAMVPACQVWALQRAGEGNRMAALATISSGLSC
                     GRLFGPLCAAAMLAIHPLAPLGLLMAAPVLALLMLLRLPGTPPQPTPECKSVSLKRDC
                     LPYLLCAILLAAAVSMMQLGLSPALTRQFVTDTTAISQQVAWLLGLSAVAALIAQFGV
                     VRPQRLTPVALLLSAGVLMSGGLAIMLSEQLWLFYPGCAVLSFGAALATPAYQLLLND
                     KLADGAGAGWLATSHTLGYGLCALLVPLVSKTGVAIALIMAALFATILFTIVSVFIWH
                     YRTIK"
     gene            1624..3348
                     /gene="iucA"
                     /locus_tag="JN125_003068"
     CDS             1624..3348
                     /gene="iucA"
                     /locus_tag="JN125_003068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001314127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerobactin synthase IucA"
                     /protein_id="HAY8872761.1"
                     /translation="MTLPSEKPATDVAAQCFLNALIRETTDWKLTEYPPDELLIPLDE
                     QKSLHFRVTYFSPTQHHRFAFPARLVTASGSYPVDFTTLSRLIIDKLRHQLFLPVPLC
                     ETFHQRVLESHVHTQQAIDARHDWAALREKALNFGEAEQALLTGHAFHPAPKSHEPFN
                     RREAERYLPDMAPHFPLRWFSVDKTQIAGESLHLNLQQRLTRFAAENAPQLLNELSDN
                     QWLFPLHPWQGEYLLQQGWCQALVAKGLIKDLGEAGTSWLPTTSSRSLYCATSRDMIK
                     FSLSVRLTNSIRTLSVKEVKRGMRLARLAQTDGWQMLQVRFPTFRVMQEDGWAGLLDL
                     NGNIMQESLFALRENLLVDQPKSQTNVLVSLTQAAPDGGDSLLVSAVKRLSDRLGITV
                     QQAAHAWVDAYCQQVLKPLFTAEADYGLVLLAHQQNILVQMLGDLPVGFIYRDCQGSA
                     FMPHATDWLDSIGEAQAENIFTHEQLLRYFPYYLLVNSTFAVTAALGAAGLDSESNLM
                     ARVRASLAEVRDQVTHKTCLNYVLESPYWNVKGNFFCYLNDHNENTIVDPSVIYFDFA
                     NPLQAQEV"
     gene            3349..4296
                     /gene="iucB"
                     /locus_tag="JN125_003069"
     CDS             3349..4296
                     /gene="iucB"
                     /locus_tag="JN125_003069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N(6)-hydroxylysine O-acetyltransferase"
                     /protein_id="HAY8872762.1"
                     /translation="MSEANIIHSRYGLRCEKLDKPLNLGWGLDNSAVLHCPGELPTGW
                     LCDALDQIFIAAPQLSAVALPWAEWREEPQALTLFGQVKSDIIHRTAFWQLPLWLSSP
                     ANRASGEMVFDAEREIYFPQRPPRPQGEVYRRYDPRIRRMLSFRIADPVSDAERFTRW
                     MNDPRVEYFWEQSGSLEVQTAYLERQLTGKHAFPLIGCFDDRPFSYFEIYWAAEDRIG
                     RHYSWQPFDRGLHLLVGEQQWRGAHYVQSWLRGLTHYLLLDEPRTQRTVLEPRTDNQR
                     LFRHLEPAGYRTIKEFDFPHKRSRMVMADRHHFFTEVGL"
     gene            4296..6038
                     /gene="iucC"
                     /locus_tag="JN125_003070"
     CDS             4296..6038
                     /gene="iucC"
                     /locus_tag="JN125_003070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aerobactin synthase IucC"
                     /protein_id="HAY8872763.1"
                     /translation="MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGA
                     QWRFIAERGIWGWLWIDAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYAT
                     LLGDLQLLKARRGLSASDLINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEY
                     TNTFRLHWLAVKREHMIWRCDNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPL
                     PVHPWQWQQKIATDFIADFVEGRMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPL
                     TIYNTSCYRGIPGRYIAAGPLASRWLQQVFATDATLVQSGAVILGEPAAGYVSHEGYA
                     ALARAPYRYQEMLGVIWRENPCRWLKPDESPVLMATLMECDENNQPLAGAYIDRSGLD
                     AETWLTQLFRVVVVPLYHLLCRYGVALIAHGQNITLAMKEGVPQRVLLKDFQGDMRLV
                     KEAFPEMDSLPQEVRDATSRLSADYLIHDLQTGHFVTVLRFISPLMVRLGVPERRFYQ
                     LLAAVLSDYMNKHPQMAERFAIFSLFRPQIIRVVLNPVKLTWPDLDGGSRMLPNYLEN
                     LQNPLWLVTQEYES"
     gene            6035..7372
                     /gene="iucD"
                     /locus_tag="JN125_003071"
     CDS             6035..7372
                     /gene="iucD"
                     /locus_tag="JN125_003071"
                     /EC_number="1.14.13.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent L-lysine N(6)-monooxygenase"
                     /protein_id="HAY8872764.1"
                     /translation="MKKSVDFIGVGTGPFNLSIAALSHQIEELNCLFFDEHPHFSWHP
                     GMLVPDCHMQTVFLKDLVSAVAPTNPYSFINYLVKHKKFYRFLTSRLRTVSREEFSDY
                     LRWAAEDMNNLYFSHTVENIDFDKKSRLFLVQTSRGEYFARNICLGTGKQPYLPPCVK
                     HVTQSCFHASEMNLRRPDLSGKRITVVGGGQSGADLFLNALRGEWGEAAEINWVSRRN
                     NFNALDEAAFADEYFTPEYISGFSGLKEDIRHQLLDEQKMTSDGITADSLLTIYRELY
                     HRFEVLRKPRNIRLLPSRSVTTLESSGPGWRLLMEHHLDQGRESLESDVVIFATGYRS
                     ALPQILPSLMPLITMHDKNTFKVRDDFTLEWSGPKENNIFAVNASMQTHGIAEPQLSL
                     MAWRSARILNRVLGRDLFDLSMPPALIQWRSGSRKKPQPEAASLTHYTANIQE"
     gene            7378..9573
                     /gene="iutA"
                     /locus_tag="JN125_003072"
     CDS             7378..9573
                     /gene="iutA"
                     /locus_tag="JN125_003072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709458.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric aerobactin receptor IutA"
                     /protein_id="HAY8872765.1"
                     /translation="MRKKYMPRALGPLLLVVLSPAVAQQNDDNEIIVSASRSNRTVAE
                     MAQTTWVIENAELEQQIQGGKELKDALAQLIPGLDVSSQSRTNYGMNMRGRPLVVLID
                     GVRLNSSRSDSRQLDSVDPFNIDHIEVISGATALYGGGSTGGLINIVTKKGQPETMME
                     FEAGTKSGFNSSKDHDERIAGAVSGGNDHISGRLSVAYQKFGGWFDGNGDATLLDNTQ
                     TGLQHSNRLDIMGTGTLNIDESRQLQLITQYYKSQGDDNYGLNLGKGFSAISGSSTPY
                     VSKGLNSDRIPGTERHLISLQYSDSDFLGQELVGQVYYRDESLRYYPFPTVNANKQAT
                     AFSSSQQDTDQYGMKLTLNSQLMDGWQITWGLDAEHERFTSNQMFFDLAQASASGGLN
                     NHKIYTTGRYPSYDITNLAAFLQSSYDINDIFTVSGGVRYQYTENRVDDFIDYTQQQK
                     IAAGKAISADAIPGGSVDYDNFLFNAGLLMHITERQQAWFNFSQGVALPDPGKYYGRG
                     IYGAAVNGHLSLTKSVNVSDSKLEGVKVDSYELGWRFTGDNLRTQIAAYYSLSNKSVE
                     RNKDLTISVKDDRRRIYGVEGAVDYLIPDTDWSTGVNFNVLKTESKVNGQWQKYDVKE
                     SSPSKATAYINWAPEPWSLRVQSTTSFDVSDAEGNDINGYTTVDFISSWQLPVGTLSF
                     SVENLFDRDYTTVWGQRAPLYYSPGYGPASLYDYKGRGRTFGLNYSVLF"
BASE COUNT         2369 a         2551 c         2629 g         2332 t
ORIGIN      
        1 cgtgaaggcg atttttatga cctgtttgaa cgcgcagagc agactcccgg aataaaagct
       61 gactggcttg tcagaatgaa atttaataac agagcaacgc tgaatattaa tggtaaacgg
      121 gatcataggt tgttgcacga aagaatcatg gagattacac cgcagcaact ggttgaattc
      181 actatacctg atgggcgggg gcagcaagcc agaacactgc ctgacatgct ttcatcagac
      241 gcaggtcctc tctcatatcc tctgatttac tccagtaagg tgatgatcat atctttattt
      301 gatagtacgg taatgccaga taaatacaga cacaatggta aataatatag ttgcaaataa
      361 tgctgccata atcagcgcga ttgcgacacc tgttttcgat accagcggca ccagcaaagc
      421 gcacagtcca tagccaagtg tgtgactggt agcgagccag cccgcgcctg cgccatcagc
      481 cagcttatca ttcagtagaa gttgataagc gggtgttgcc agagctgctc caaatgacag
      541 cactgcacag cccgggtaaa acaaccatag ctgttcggag agcatgatag ccagaccacc
      601 actcatcaac actccggcac tcaggagcag ggccaccgga gtcaggcgct gcggacggac
      661 taccccgaac tgcgcgataa gcgcagctac tgcggacaga cccaacagcc aggccacctg
      721 ttggctaatg gcggtggtat ccgtgacgaa ctggcgagta agggcaggcg aaagtccaag
      781 ctgcatcatg ctcaccgccg cagccagtaa tattgcgcaa agcagataag gcagacaatc
      841 ccgcttcaga ctgacgctct tgcactccgg tgtgggctgt ggtggtgtgc cgggcaaccg
      901 cagcagcatc agcagcgcca gcactggtgc tgccatcagt agccccagtg gcgccagagg
      961 atgaatggcc agcattgctg ccgcgcacag cggcccgaat agcctgccgc aactcaggcc
     1021 ggagctgatg gttgccagag cggccatgcg attcccttct ccagctctct gcaatgccca
     1081 gacctgacag gctggcacca ttgccgacac ggtcagcccg taggcgatcc gggcgatgat
     1141 taatattccc agtcccaccg ctgttgttat ggcgctggta gccatcagca cgcttcccag
     1201 ccctagcagg gtaaagctta tgccatatcc tcccagagcc cacaacacca caggtttact
     1261 gccagtacgg gaaatttgct ttccccacca cggggacgat ggcagaaaca gcattgagcc
     1321 aagcatcagc agggcagccc atacagacag actcagattt gtctgtatga ccagaacagg
     1381 gagcacaacc agcagaccgt tctgtccgat accgagaagc ccggcactga acgcaagtgg
     1441 ccagcaggac agtgtttttt ggggcgtatc ttcgatccct ggtgacatta taatgtttca
     1501 actccatgta ttaattgtgt ttatttgtaa aattaattta tctgacaata acatttattg
     1561 ttgataatga gaatcattat cgacataatt gttattattt tactgtgtgg gagctgtttg
     1621 actatgaccc tgccctctga aaaaccagcc acagatgtgg ctgcgcagtg cttcctgaat
     1681 gcactgattc gtgaaaccac agactggaaa ctgacagaat acccgccaga cgaattgctc
     1741 atcccgctgg atgagcagaa atcgctccat ttcagagtga cttatttctc cccaacccag
     1801 catcaccgct ttgcatttcc tgcacgtctg gtcacggcat caggcagtta tcctgtcgac
     1861 tttaccactc tctcccggct tattattgat aagctacgcc atcaactgtt tctgcccgtt
     1921 cccctctgcg aaactttcca ccagcgcgtg ctggaaagcc atgtccatac gcaacaggca
     1981 attgatgccc gtcatgactg ggccgctctg cgtgaaaaag cgttgaattt tggcgaggct
     2041 gagcaggcgc tgctgacagg acacgctttc caccctgcgc ctaagtctca tgaaccgttt
     2101 aaccggcggg aggctgaacg ctacctgcct gatatggcac cccacttccc actgcggtgg
     2161 ttttcggtgg ataaaacaca aatcgccggt gaaagtttgc atctcaacct tcaacagcgg
     2221 ctgacgcgat ttgccgcaga gaatgcgcct cagttactca acgaattaag tgacaaccaa
     2281 tggctgttcc cgttgcaccc gtggcagggg gaatatcttt tgcagcaggg gtggtgccag
     2341 gcacttgttg ctaaagggct gattaaagac ttaggtgagg ccggcacgtc gtggctgccg
     2401 accacctctt cccgttccct ctactgtgcc accagccgcg atatgatcaa gttctccctg
     2461 agcgtacggc tgaccaactc catccgtact ctgtccgtga aagaagtgaa gcgtgggatg
     2521 cgcctggcac gcctggctca aaccgacggc tggcagatgc tacaggtccg cttcccgact
     2581 ttccgggtaa tgcaggagga tggctgggcc gggctgctcg atcttaacgg caacatcatg
     2641 caggaaagtc tgtttgccct gcgtgaaaat ctgctggtgg atcagccgaa aagccagact
     2701 aacgtactgg tctccctgac tcaggccgca cctgatggcg gtgattcgct gctggtttcg
     2761 gcggtaaaac gcctgagcga tcgcctcggt atcactgtgc aacaggccgc ccatgcatgg
     2821 gtcgatgcat actgtcagca agtgctaaag ccgctgttta cggctgaagc ggattacggc
     2881 ctggtgctgc tggcgcatca gcaaaatatt cttgtccaga tgcttgggga tctgccggtc
     2941 ggatttattt accgtgactg tcagggcagc gcttttatgc ctcacgcgac agactggctc
     3001 gattctattg gcgaggcgca ggcggaaaat attttcaccc atgagcagtt gctgcgctat
     3061 ttcccttatt acctgctggt taactccact tttgctgtga ccgctgcgct gggggctgcc
     3121 gggctggaca gcgaatcgaa tctgatggct cgtgtacgag catcgctggc tgaagtgcgt
     3181 gatcaggtga ctcataaaac ctgtctcaac tacgtgctgg aaagtccgta ctggaacgta
     3241 aaaggtaact ttttctgtta tctgaacgat cataacgaga acaccattgt tgatccttcg
     3301 gtgatctatt tcgatttcgc taacccgctg caggctcagg aggtctgaat gtctgaggca
     3361 aacattattc acagcagata tggactgcgc tgtgaaaaac tcgacaagcc cctgaatctt
     3421 ggctggggac tggacaatag cgcggtgttg cactgtcccg gggagctgcc gacagggtgg
     3481 ctgtgcgatg cgctggatca gatatttatc gccgcaccac aactgtcagc agtggctctc
     3541 ccctgggccg aatggcgtga ggagccacag gcgctgacgc tttttgggca ggtaaaaagc
     3601 gacattatcc atcgtactgc cttctggcag ttaccgttat ggttgagttc accggcaaac
     3661 cgggcctccg gtgaaatggt ttttgatgca gagcgtgaga tttatttccc gcagcgccca
     3721 ccccgtccac agggtgaggt ttaccgccgt tacgatccac gtattcgcag gatgctgagt
     3781 ttccgcattg ccgatcccgt ttctgatgca gaacgtttca cccgctggat gaatgatccg
     3841 cgcgttgagt atttctggga gcaaagtggc tcactggagg tacagaccgc ctatctggag
     3901 cgccagctca ccggtaaaca tgcattcccg ctgattgggt gcttcgacga tcggccattc
     3961 agctatttcg aaatctactg ggcggcggaa gaccgcattg gtcgtcacta ttcgtggcag
     4021 ccctttgacc gtggcctgca tctgctggtt ggtgaacagc aatggcgcgg ggcccactat
     4081 gtgcaaagct ggctgcgcgg gctgacacat tacctgctgc tggatgagcc ccgtacgcag
     4141 cgcacagtac tggagccacg caccgataac cagcgcctgt tccgccatct tgagcctgcg
     4201 ggataccgga caattaaaga gttcgacttc ccacataagc gctcgcgcat ggtgatggcg
     4261 gatcgtcatc acttcttcac ggaggtcggt ctgtaatgaa tcacaaggac tgggattttg
     4321 ttaaccgtcg gctggtggca aaaatgttgt ctgagatgga gtatgagcag gttttccacg
     4381 cggaatctca gggcgatgac cactactgca ttaacctgcc gggagcacaa tggcgcttca
     4441 tcgctgaacg tggtatctgg ggctggctgt ggattgatgc ccaaacgttg cgctgcacgg
     4501 acgaaccagt actggcgcag acgctgctga tgcagctaaa gccggtgctg tcaatgagtg
     4561 atgccactgt tgcagagcat atgcaggatt tgtatgccac gctactgggc gacctgcaac
     4621 tgctgaaggc ccgtcgcgga ctgagtgcca gtgacctgat taatcttgat gccgatcgtc
     4681 tgcaatgcct gctgagcggt catcctaaat tcgtttttaa taaaggtcgc cgtggctggg
     4741 gcaaagaggc gctggaacga tatgcgccag agtataccaa caccttcaga ctgcactggc
     4801 tggcggtaaa acgtgaacat atgatctggc gctgcgataa cgatctggat attcagcagt
     4861 tgttgactgc cgcaatggat ccgcaggagt ttacacgctt cagtcaggtc tggcaggaaa
     4921 acgggctgga tcacaactgg ctaccgctgc cggtacatcc gtggcagtgg cagcaaaaaa
     4981 tcgccacaga cttcatcgct gattttgtcg aaggcaggat ggtgtctctc ggcgagtttg
     5041 gcgaccagtg gctcgcccag cagtcgctgc gtaccctgac caacgccagc cgccggggag
     5101 ggctggatat caagctgccg ctgaccatct acaacacctc atgctaccgg gggatccctg
     5161 gcagatatat cgctgccgga ccactggctt cacgctggct gcaacaggtt tttgcgaccg
     5221 acgccaccct ggtgcaaagc ggcgcagtga tccttggtga accggcggca ggctatgtgt
     5281 cccatgaagg ctatgccgcg cttgcccggg ctccctatcg ctaccaggaa atgcttggtg
     5341 ttatctggcg ggagaatccg tgccgctggc tgaaaccgga tgaaagtcct gttctgatgg
     5401 caacactgat ggagtgcgac gaaaacaatc agccgctggc aggcgcatat atcgaccgct
     5461 ccggactgga cgctgaaacc tggcttacgc aattgttccg ggtggttgtg gttccgctgt
     5521 atcacctgct ttgccgctac ggtgtcgcgc ttattgcaca cggacaaaat ataacgctcg
     5581 ccatgaaaga gggggtacca cagcgtgttc tgctgaaaga cttccagggc gatatgcggc
     5641 tggtgaaaga agcgtttccc gaaatggact ctttgcctca ggaggtgcgt gatgccacat
     5701 cccgtctgag tgcggactac ttaatccatg atttgcagac gggtcacttc gtgacagtac
     5761 tgcgttttat ttcgccactg atggttcgtc ttggcgtacc tgaaaggcga ttttatcaac
     5821 tgctggcagc agtgttgagt gattacatga acaaacatcc acaaatggca gagcgttttg
     5881 cgattttctc actcttcagg ccacaaatca ttcgcgtggt gctgaacccg gtaaaactga
     5941 cctggccgga cctggatggc ggcagtcgca tgctgccgaa ttaccttgag aatctgcaaa
     6001 atccgctgtg gctggtaact caggaatatg aatcatgaaa aaaagtgtcg attttattgg
     6061 tgtcgggaca gggccattta atctcagcat tgctgcattg tcacatcaga tcgaagaact
     6121 gaactgtctc ttctttgacg aacatcctca tttttcctgg catccgggta tgctggtacc
     6181 ggattgtcat atgcagaccg tctttctgaa agatctggtc agtgcagttg cacctacaaa
     6241 tccctacagc tttattaact atctggtgaa gcacaaaaag ttctatcgct tccttacaag
     6301 caggctacgt acagtatccc gtgaagagtt ttctgactat ctccgctggg ctgctgaaga
     6361 tatgaataac ctgtatttca gtcataccgt tgaaaatatt gatttcgaca aaaaaagtcg
     6421 attgtttctg gttcagacca gtcggggaga atattttgcc cgcaatatct gccttggtac
     6481 aggaaaacaa ccttatttac caccctgtgt gaagcatgtg acacaatcct gtttccatgc
     6541 cagtgaaatg aatcttcgtc ggccggacct gagtggaaaa cggataaccg tggttggtgg
     6601 aggacagagt ggtgcagacc tgttccttaa tgcattacgc ggggaatggg gagaagcggc
     6661 ggaaataaac tgggtctcac ggcgtaataa ttttaacgca ctggatgagg ctgcttttgc
     6721 tgatgagtat tttacacctg aatatatttc aggcttctcc ggactgaagg aagatattcg
     6781 ccatcagtta ctggatgagc agaaaatgac atcggatggc atcactgccg attctttact
     6841 gaccatttat cgtgagttgt accaccgttt tgaagttctg agaaaaccaa gaaatatccg
     6901 tctgctaccc agtcgctcgg taacaactct ggaaagtagt ggtccgggct ggaggttatt
     6961 gatggaacat catctggatc agggcagaga gagcctggaa agtgatgtgg tgattttcgc
     7021 cacaggttac cgttctgcat tgccacaaat acttccctca ctgatgccct tgatcaccat
     7081 gcacgataag aacaccttta aagtgcgtga tgacttcact ctggaatgga gtggcccgaa
     7141 agaaaataac atctttgcgg tcaacgccag catgcaaact catggcatcg ccgaacccca
     7201 gctcagcctg atggcctggc gatctgcacg tattcttaat cgcgtactgg ggcgtgattt
     7261 attcgatctc agtatgccgc ccgcactgat tcagtggcgc agcggcagcc ggaaaaaacc
     7321 gcagccggag gctgcttctt taactcacta tacagcaaat attcaggaat aacgatgatg
     7381 cgcaaaaagt atatgccccg ggctcttggt ccgctgcttc ttgtcgtgct gtcaccagct
     7441 gtcgcccagc aaaacgatga taatgagatc atagtgtctg ccagccgcag caatcgaact
     7501 gtagcggaga tggcgcaaac cacctgggtt atcgaaaatg ccgaactgga gcagcagatt
     7561 cagggcggta aagagctgaa agacgcactg gctcagttaa tccccggcct tgatgtcagc
     7621 agccagagtc gaaccaacta cggtatgaac atgcgtggcc gcccgctggt tgtcctgatt
     7681 gacggtgtgc gcctcaactc ttcacgttcc gacagccgac aactggactc tgtcgatcct
     7741 tttaatatcg accatattga agtgatctcc ggcgcgacgg ccctgtacgg tggcgggagt
     7801 accggagggt tgatcaacat cgtgaccaaa aaaggtcagc cggaaaccat gatggagttt
     7861 gaggctggca caaaaagtgg ctttaacagc agtaaagatc acgatgagcg cattgccggt
     7921 gctgtctccg gcggaaatga ccatatctcc ggacgtcttt ccgtggcata tcagaaattt
     7981 ggcggctggt ttgacggtaa cggcgatgcc accctgcttg ataacaccca gaccggcctg
     8041 cagcactcca atcggctgga catcatggga accggtacgc tgaacatcga tgaatcccgg
     8101 cagcttcaac tgataacgca gtactataaa agtcagggag acgacaatta cgggcttaat
     8161 ctcgggaaag gcttttccgc catcagcggg agcagcacac catacgtcag taaggggctg
     8221 aattctgacc gcattcccgg cactgagcgg catttgatca gcctgcagta ctctgacagt
     8281 gatttcctgg gacaggaact ggtcggtcag gtttactacc gcgatgagtc gttgcggtac
     8341 tacccgttcc cgacggtaaa tgcgaataaa caggcgacgg ctttctcctc gtcacagcag
     8401 gataccgacc agtacggcat gaaactgact ctgaacagcc aactgatgga cggctggcaa
     8461 atcacctggg ggctggatgc tgagcatgag cgctttacct ccaaccagat gttcttcgat
     8521 ctggctcagg caagtgcttc cggagggctg aacaaccata agatttacac caccgggcgc
     8581 tatccgtcat atgacatcac caatctggcg gccttcctgc aatccagcta tgacattaat
     8641 gatattttta ccgttagcgg tggcgtacgc tatcagtata ctgagaacag ggtagatgat
     8701 ttcatcgact acacgcagca acagaagatt gctgccggga aggcgatatc tgccgacgcc
     8761 attcctggtg gttcggtaga ttacgataac tttctgttca atgctggtct gctgatgcac
     8821 atcaccgaac gtcagcaggc atggttcaat ttttcccagg gggtggcatt gccggatccg
     8881 gggaaatatt atggtcgcgg catctatggt gcagcagtga acggccatct ttccctgaca
     8941 aagagcgtga acgtcagcga cagtaagctg gaaggcgtga aagtcgattc ttatgaactg
     9001 ggctggcgct ttaccggtga caacctgcgg actcaaatcg cggcatatta ctcgctttcc
     9061 aataagagcg tggaaaggaa taaagatctg accatcagtg tgaaggacga caggcgccgt
     9121 atttacggcg tggaaggtgc agtggactac ctgatcccgg atactgactg gagtaccggt
     9181 gtgaacttca atgtgctgaa aaccgagtcg aaagtgaacg gtcaatggca aaaatatgac
     9241 gtgaaggaat caagtccatc gaaagcgaca gcttacatta actgggcgcc ggaaccgtgg
     9301 agtctgcgtg tacagagcac cacttctttc gacgtaagcg atgcagaggg taacgatatt
     9361 aatggttaca ctaccgtcga ttttatcagt agttggcagc ttccggtggg aacactcagc
     9421 ttcagcgttg agaacctctt cgaccgtgac tataccactg tctggggaca gcgtgcacct
     9481 ctgtactaca gcccgggtta cggccctgct tcactgtacg actacaaagg ccggggccga
     9541 acctttggtc tgaactactc agtgctgttc tgacggggat gcttttgcaa caagggtatg
     9601 ctgtaaacaa catggtcctt ggtggccatg ttgtttacag ccagtataat atacagcctt
     9661 aacaagatat tccgtctccg gaatggactg ttcaccactg aataacatta tttctgtttt
     9721 atggatcttt gactgaaatt tatcgcatat cctcatttca ttgtccgtct gaaaactaac
     9781 cttacaagta agcgtcgtct cagcaccgtc tggcagatcc tgaaattcct gagaggatga
     9841 tctgcgcgta aggcagtatg actttccgtg agacagatgc t
//
LOCUS       DADMHM010000146         9850 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.149, whole genome shotgun sequence.
ACCESSION   DADMHM010000146 DADMHM010000000
VERSION     DADMHM010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9850)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9850)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9850
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.149"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..515
                     /locus_tag="JN125_003073"
     CDS             <1..515
                     /locus_tag="JN125_003073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001493761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ISKra4 family transposase"
                     /protein_id="HAY8872766.1"
                     /translation="WFHITMRLKVLMQYARGLLVSDPEAGSKVLALLESIKRYLWHGN
                     VVAALEHIDNCVMYCDDPELSYPSLKSLQKHLDEMYTYIRNNKMMIPNYGEMRRYGEP
                     VSTAFVESTINEVIARRMAKKQQMQWSRKGAHYLLQTRTAVLNNELQDKFVCWYPGFQ
                     SDGKGPAMAA"
     gene            548..976
                     /locus_tag="JN125_003074"
                     /pseudo
     CDS             548..976
                     /locus_tag="JN125_003074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014839983.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
     gene            complement(1295..1951)
                     /locus_tag="JN125_003075"
     CDS             complement(1295..1951)
                     /locus_tag="JN125_003075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001516695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrS1"
                     /protein_id="HAY8872767.1"
                     /translation="METYNHTYRHHNFSHKDLSDLTFTACTFIRSDFRRANLRDTTFV
                     NCKFIEQGDIEGCHFDVADLRDASFQQCQLAMANFSNANCYGIEFRACDLKGANFSRT
                     NFAHQVSNRMYFCSAFISGCNLSYANMERVCLEKCELFENRWIGTNLAGASLKESDLS
                     RGVFSEDVWGQFSLQGANLCHAELDGLDPRKVDTSGIKIAAWQQELILEALGIVVYPD
                     "
     gene            2346..3361
                     /locus_tag="JN125_003076"
                     /pseudo
     CDS             2346..3361
                     /locus_tag="JN125_003076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612175.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            complement(3404..6199)
                     /locus_tag="JN125_003077"
                     /pseudo
     CDS             complement(3404..6199)
                     /locus_tag="JN125_003077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001496645.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Tn3-like element Tn3 family transposase"
     gene            6213..6545
                     /locus_tag="JN125_003078"
     CDS             6213..6545
                     /locus_tag="JN125_003078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001393253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin fold metalloprotein, WbuC family"
                     /protein_id="HAY8872768.1"
                     /translation="MRPHRHPHTFELLLPLRGRFVVLNFDDRGTVTHRAILGETCTVL
                     EMAAGTWHAVLSLDTGGIIFEVKHGGYQPVAADDYAHWAPAEGEPGTTELMAWYAQAQ
                     VGDSTFAV"
     gene            complement(6592..7467)
                     /locus_tag="JN125_003079"
     CDS             complement(6592..7467)
                     /locus_tag="JN125_003079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011091028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class A extended-spectrum beta-lactamase
                     CTX-M-15"
                     /protein_id="HAY8872769.1"
                     /translation="MVKKSLRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQS
                     GGRLGVALINTADNSQILYRADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKK
                     SDLVNYNPIAEKHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGD
                     ETFRLDRTEPTLNTAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNT
                     TGAASIQAGLPASWVVGDKTGSGGYGTTNDIAVIWPKDRAPLILVTYFTQPQPKAESR
                     RDVLASAAKIVTDGL"
     gene            complement(7723..8985)
                     /locus_tag="JN125_003080"
                     /pseudo
     CDS             complement(7723..8985)
                     /locus_tag="JN125_003080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000608644.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1380-like element ISEc9 family transposase"
     gene            complement(9191..9385)
                     /locus_tag="JN125_003081"
                     /pseudo
     CDS             complement(9191..9385)
                     /locus_tag="JN125_003081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019280874.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4158 domain-containing protein"
     gene            9549..>9850
                     /locus_tag="JN125_003082"
     CDS             9549..>9850
                     /locus_tag="JN125_003082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HAY8872770.1"
                     /translation="MRLFGYARVSTSQQSLDLQVRALKDAGVKANRIFTDKASGSSTD
                     REGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVAVRFIDDGISTDG"
BASE COUNT         2529 a         2348 c         2363 g         2610 t
ORIGIN      
        1 actggtttca tatcaccatg aggctgaagg tgctcatgca atatgcccgg ggactgctgg
       61 tatcagatcc agaggcgggg agtaaagttc tggcactgct ggaaagcatt aaacgatatc
      121 tctggcatgg caatgttgtc gctgcgctgg aacatattga taattgcgtt atgtattgcg
      181 atgaccctga actcagctat cctagcctga aatccctgca aaaacatctg gatgaaatgt
      241 atacctacat ccggaataat aagatgatga tcccaaacta cggcgaaatg cgtcggtacg
      301 gagagccggt atcaaccgcg tttgtggaat ccacgatcaa tgaagtgatc gccagacgaa
      361 tggccaaaaa gcagcagatg cagtggagca gaaaaggggc tcattatttg ttacagaccc
      421 ggaccgccgt tttgaataac gaactgcagg ataaatttgt ctgctggtat ccgggttttc
      481 aaagtgacgg gaagggacca gcgatggcag catagctcac gctgccccaa tattttttat
      541 gctctcggtc gtatggaagc tggaccgcct cggtcgtgat cttcgtcatc tcattaatac
      601 agtgcacgac ctgaccgcga gggggaccgg tctgaaagtg ctgaccggtc acggggcgac
      661 tatcgacaca acaacggccg ctggcaagct tgtcttcggt atctttgccg cactggcgga
      721 gtttgagcgc gaactgattg ctgaaagaac gactgcaggt ctggcatcag caagagcccg
      781 tgggcggaac ggcggccgac cttataaaat gacgccagtc aaactgcgac tggcaatggc
      841 atcaatggga caatcagaaa caaaggtcag tacgctatgc caggaacttg ggataacccg
      901 gcaaactttg tacaggcata tttcccctgt tggtcaactg cgggcggacg ggatcaagct
      961 gctcaaccgt ggataatttg aacggacgga aaaatctggg gttccggcgt agtaccccta
     1021 tcacctccac atttttgcaa cagtgcctta taaatggcag ccttatgttt acttgccaag
     1081 atgggctacc atatgatgtt ttatactgag caatattaat attatcttta atggaaaaat
     1141 taagcccact aagtgaccca ctgctatatg gctctattgt gaagacgcct gagggtaaaa
     1201 atttatacat ggttgtccct atgtctatta ttgcaaggtt gacaatatta ttcgttttat
     1261 aaatttgagc gtttaaaatc acacatcaaa gcaattagtc aggataaaca acaataccca
     1321 gtgcttcgag aatcagttct tgctgccagg ctgcaatttt gatacctgat gtatcgactt
     1381 tgcggggatc taaaccgtcg agttcggcgt ggcataaatt ggcaccctgt aggctaaatt
     1441 gcccccagac atcttcggaa aaaacacctc gacttaagtc tgactctttc agtgatgcac
     1501 ccgctaggtt cgttcctatc cagcgatttt caaacaactc acatttttct aaacaaaccc
     1561 tctccatatt ggcataggaa agattacatc cagaaataaa tgctgagcaa aagtacatac
     1621 gattactcac ttgatgggca aagtttgttc gggaaaagtt ggcacctttt aaatcacacg
     1681 cacggaactc tataccgtag caattggcat tactgaagtt tgccatcgca agttggcatt
     1741 gttggaaact tgcatcacga agatctgcga catcaaagtg gcagccttcg atatcaccct
     1801 gttcaatgaa cttgcagttg acgaatgtcg tatcacgcaa gttagcacgt cgaaagtcgc
     1861 tgcgaatgaa tgtgcaagcg gtgaaggtga gatcacttaa gtctttatgt gaaaagttgt
     1921 ggtgccgata tgtatgattg taggtttcca tgagtactcc ttgttgaaag gagggctaga
     1981 ctaccattat acatatgcca agacattaaa ataaaagcct gttacatcaa cacattacaa
     2041 cccctcaatt tacctgtttt aagtggtcaa attggcgcgt agagcgccta tcgctcttgc
     2101 attggcacgc ggccctgttg aaaaaagtta ttcgctttag atagggttag gagagccgtg
     2161 cttcgccggt aaaaaatcgg actatccgac gcagggcgga ctcatcggcg gagaagcaaa
     2221 ctttgactat atctccctac acttggaaga gggctagact ggccccatag atcaccagac
     2281 acttcgactc tcttaaaata agaggtagtc ttggaactat gtttaatacc agtcagaacg
     2341 ataagatggt tgaagtgtta tcaggacctg agcggcgtcg gcgtcgtaca ccgcaggaaa
     2401 aaattgccat tattcagcag actatggagc ccggtatgac cgtgtctcat gtcgcgcgcc
     2461 tgcatggcat caatgcaaac cagatattca aatggcgcaa gcaatattaa gacggttcac
     2521 tgacggctgt tgcatcgggc gaggaagtgg tgccggcctc cgaactcgct gccgccaata
     2581 agcaaattcg cgaactccag cgccttctgg gcaaaaagac gatggaagcc gagatactca
     2641 aagaggccgt ggagttcggc cgggcaaaaa aatggattgc gcatgcgccc tcgttgcctg
     2701 ggaacgacga ataagcgacg tttgcagaag tcttggcgtg tcgcgtgcgc agttgagcat
     2761 tcgggttcac cggccatctg actgacagga tcgcagacgg cagccccgtt ctgacgatac
     2821 caccgtattg tcccggataa acatggcggt ggctgacctg ccgacgtatg gttatcgccg
     2881 tgtgtgggcg ctgctgcgac gggagtcgga gcgggacggc ctgcctgtgg ttaatgcaaa
     2941 gcgggtgtat cgcattatga gaacgcataa tctgcttctt gaacgtaaac ccgctgatcc
     3001 ttgccgtaag cgggcccata aggggcgcgt agcagtagcg gaaagtaacc ggcgctggtg
     3061 ctcagatggc tttgagttcc gctgtgataa tggcgaaaag ctgcgggtga ccttcgcgca
     3121 ggactgctgc gacagggaga tcattgactg ggcagcgagc accggaggct atgacaaaga
     3181 aacggtgcag gatgtcatgc tgggtgcggt ggaaaaacgc ttcggaaggc agttgccaac
     3241 agtgccggcg ttcgcccggt tgctgggact ggagccttgt acgacagcag tgcgaagccc
     3301 ggaaagcaat ggcatagcag aaagcttcgt gatgacgata aaacgggact acatcagcat
     3361 caggatttta ggggtctgac gctcagtgga acgaaaactc acgttaagca acgttttctg
     3421 cctctgacgc ctcttttaat ggtctcagat gtcctttggt caccagttct gccagcgtga
     3481 aggaataatg gccgagcata ttgatatgtc cgtggcaaag cggggagagg cgtgcgatat
     3541 cttcatcatt cagtgtttca ccctgcgccc ggagatgatc cagggctgcc tgcatataaa
     3601 tagtgttcca taacacgacg gcgttagtga ccagccccag tgtgcccagt tgatcttcct
     3661 gaccgtcggt atatcgtttt cttatctcac ctttttgacc gtgacagatg gctctggcaa
     3721 cggcatggcg actttctccc cgattaagct gggtcagaat gcgccggcgg taatcttcat
     3781 catcaatata attaagcaga tacagcgttt tgttgatgcg ccccacttca atgattgcct
     3841 gagtcagtcc ggaaggacgt tcacttttca gcaatgaacg gaccagcact gaaacctgta
     3901 ctttgcccag cttcagggag ccagcggtcc ggatcatttc gtcccactga aggactattt
     3961 ttcggggatc tgattgccct ctggcaatat cattcagcac gccatagtcg gcatcatggt
     4021 ccattcgcca gaaaaccgaa gcaccggcat cagccaggcg tggagaaaac tggtatccca
     4081 gcagccagaa aaggccaaag acaagttcgc tggcacctgc tgtatcggtc ataatttcgg
     4141 ttggattcag cccggtctcc tgttccagaa gaccttccag cacaaagata gagtccctca
     4201 gcgtccccgg tataacgatg ccatgaaagc cggaatactg atcggacaca aagttgtacc
     4261 aggtgatccc tctgttatta ccaaagtatt tgcggttcgg tccggcattg attgttctga
     4321 ctggcgtaac aaagcgcatt ccatctgcag atgccacttc tcctccaccc catatctgtg
     4381 ccagtggcag cgttgcctga aaatcaacca gtctggcatt agcgctggtg atagtttcag
     4441 cccgcagata gttcgctttt gtccagttca gccggtgtcg ggtcagtgca ggaacatttg
     4501 atctgatcag tggttccaga ccgatattgc aggcttcagc catcagcacg gcgctgatgc
     4561 tgacgggcag atcatcaact ctggcactgg cttcactagc atggaaaaac tcatcagcaa
     4621 atccggtatg ggcgttaatt tcgagcagca actccgttaa atccaccgga gggagtagat
     4681 cactgatcat tttgctcagt cgtttcagac tgtccggctc atcaagactg gcgaggggag
     4741 aaattgtcaa ccggggcttc gggccagaaa catcgagttc gacagcctca ttttcgcaaa
     4801 gacgtgcagc aacctgtctg taacgactat caagctgatg acccagagat tttattgctt
     4861 cctgcgggtc tgtcgggtgc cccaaagaac gataaacctt aatccggttt gcctgccagt
     4921 cagcaccctg tagtaatctt gcacgaggat ctccccaccg gttactgccg gtaacgtaga
     4981 catccctccg cctcagacta tcctgcagtt tactgagaaa gcagagcgtg tatcccctgc
     5041 gggtgatatg tttttccttg ttaatcacca gccgtttcca tgaccgactg ataatttccg
     5101 ttggtgcgtc gtcaaaaaac tgccgccgtg agctgaactc ccggctgagg tagtcacagg
     5161 cattcagagt ggtaaccccg gcaggtgcgg atgaaaattt aacggtattc agcagatggg
     5221 gcaggaaacg acgaacgcgc ccgtactgct ccaccatttc ttcatgaaaa ttatcgtctg
     5281 agggccgggc aatttcacgg acaagcgtga tgatttcagc cagcttttgc cttgggatgt
     5341 agctgaacac ctcagcacga atcgattcgt ccggtgtttc ttctttcagc aggtacgaac
     5401 atgcgctggc gagcgccaat gcagatttat ccagatcctt cagcgagcgg agccgttttt
     5461 tctgcccaat ctttctggcg tcacggatga taacggccag catggcgtcc agaacgtcca
     5521 atgcatcatc cagcgccagc gtttcccatg caaggacaaa ggcaaccaga accgccatcc
     5581 ttttctgcgg tgacatcctg gcaatattga acaccgaagt cataccagca taacgtgcga
     5641 gatttttcag gcgcacagcc gggagtgtac tcaggttttc agcatgcagg ccaaaatcgt
     5701 tcagagtttt ccagcgttca attgcttcat taaacgccgg accactgatg gtcacagggc
     5761 cctttttcag tgattccagt aaagacaggc ggctgcaatc agttggcccc agcagcatct
     5821 ccagctgtga acgctgttcg gctgacggta tcagtgccag tttgttccac aggcgcaacg
     5881 tcgccttttc ccttacctct gaaatcaacc gggtcagcgt agtggctccg gggagaataa
     5941 tacgatgttg cataagccac cctgtcgcca gatcgaaaag caggccagga cgttcgttgc
     6001 ttatccagct ccgggtatat aaaagacggg taaggcgaaa tgtccagggc caggcaaatt
     6061 cacgatactg atagtgctga cgtatcagcg ctgcatgctc acggcgggta ttttccctct
     6121 gaccgtattc tgcaagaacg gtgatatcac gaatcccgag ctgtctggcg gtaaaatgcc
     6181 ggacgccgga aggaatatga cctgggacct acgtgcgccc gcaccgacac cctcacacct
     6241 tcgagctact gttgccatta aggggtcgtt tcgtggtgct gaattttgac gatcggggta
     6301 ccgtcaccca tcgggcgata ttgggggaaa cctgtacggt gctggagatg gccgcaggaa
     6361 cctggcatgc cgtgctgtcg ctggataccg gtggcataat ttttgaagta aaacacggtg
     6421 gctatcaacc cgtggctgcc gatgactatg cgcactgggc tccagcggaa ggagaaccag
     6481 gaaccacgga gcttatggcc tggtatgcgc aagcgcaggt gggcgacagc acttttgccg
     6541 tctaaggcga taaacaaaaa cggaatgagt ttccccattc cgtttccgct attacaaacc
     6601 gtcggtgacg attttagccg ccgacgctaa tacatcgcga cggctttctg ccttaggttg
     6661 aggctgggtg aagtaagtga ccagaatcag cggcgcacga tcttttggcc agatcaccgc
     6721 gatatcgttg gtggtgccat agccaccgct gccggtttta tcccccacaa cccaggaagc
     6781 aggcagtcca gcctgaatgc tcgctgcacc ggtggtattg cctttcatcc atgtcaccag
     6841 ctgcgcccgt tggctgtcgc ccaatgcttt acccagcgtc agattccgca gagtttgcgc
     6901 cattgcccga ggtgaagtgg tatcacgcgg atcgcccgga atggcggtgt ttaacgtcgg
     6961 ctcggtacgg tcgagacgga acgtttcgtc tcccagctgt cgggcgaacg cggtgacgct
     7021 agccgggccg ccaacgtgag caatcagctt attcatcgcc acgttatcgc tgtactgtag
     7081 cgcggccgcg ctaagctcag ccagtgacat cgtcccattg acgtgctttt ccgcaatcgg
     7141 attatagtta acaaggtcag attttttgat ctcaactcgc tgatttaaca gattcggttc
     7201 gctttcactt ttcttcagca ccgcggccgc ggccatcact ttactggtgc tgcacatcgc
     7261 aaagcgctca tcagcacgat aaagtatttg cgaattatct gctgtgttaa tcaatgccac
     7321 acccagtctg cctcccgact gccgctctaa ttcggcaagt ttttgctgta cgtccgccgt
     7381 ttgcgcatac agcggcacac ttcctaacaa cagcgtgacg gttgccgtcg ccatcagcgt
     7441 gaactggcgc agtgattttt taaccatggg attccttatt ctggaagata cgaaataaca
     7501 acaacatgaa tagtccctaa attccacgtg tgttttttat tagcttcaaa aatcactatt
     7561 tcacgaagaa tttagactgc ttctcacaca ttgtaacatt atttacaacc acctttcaat
     7621 catttttgat aaatcattga tttcatcttt gctgcaatga tacttaataa actctgcaag
     7681 ttatccacag agcaacactc aattttattg atgatattct tattatacca gacatttttc
     7741 atacactccc ttgtacggat agttttccga caacttcatg attacatatc ttgcggtttt
     7801 gattattttt gctgcaagaa atacatactt caaacgaaag gtctttattt gctgtctgta
     7861 ttctgaagag tccaaggaat caaacttgaa caacaaaaat aggttatatg aaagcatcat
     7921 catttgaaac acggcttcat tcgcccaaaa tgactttagc aagagatgac ccaccgccat
     7981 gtcgtatttg gcttctttga tatagttttc agcattacca cgcttttcat agtatataac
     8041 tactttttca gaaagcaagg tagtatttgt tacaaagaaa aagtagtcgt attcggaacc
     8101 ttctaaaagt gataattgtg ctctttcttt ttctggtttc agtacgcgag atacgacaaa
     8161 tcttctgtct ttttcccatt taactaattt tgtatacagt tctgtagttt ctctaccttc
     8221 ttctccttta acgaatacaa ttgatgaatt cgttgcttat gaggtgagtg tagaataact
     8281 tttggcttta attaaatatt tgcatccaag agattctatc gtttcgataa ttttttcatc
     8341 aaagtagcca ctatccattc gaaataaaat ttctaaatcg tctgatttga tgttagcaac
     8401 aatttctttg atcatttccg cagcaccgtt tgcagtgtaa gtattgccac ttcttacaaa
     8461 tccggtaaca tatgctttta attcgtcgca aaatgcaaat tggatattgt agcatcggtt
     8521 tcccagtttc ttaggattat atccttttga cgcaccttct tgatgacctt ctacgttaat
     8581 tacactacta tcaatatcaa tcgtaatgga tgtcaattta cttttagtga gcagtttttt
     8641 aaagacttta aaattaatgt ctctaaacat ttgggttgtc ttgaagttga agtttcctag
     8701 aaaccgtgac actgtttcag gttcttttac ggaaatatca aactcgttga cgaggggatc
     8761 attttgaagt agctttagac gttctaactt atcaatgcca atgaagtgac cgcagagcat
     8821 ggtctttata tgattcatct tgattttatt tgttgagtca ttatcaaata cgaggtcatt
     8881 ttcaataaaa tcaaaaatcc cattgctttt tgcattctca aggagcagaa aaagacctgc
     8941 atttgatgtt agattcttag ctttgaaatc aattttatta atcataatta gaaccccttt
     9001 ttactacttt tcttactatt attttaccat atatcgagtc ataaaagctg ataatttaac
     9061 atatttttga gcacttttct ttcacccaat gggtgaaagc tgaatttcga aggaatgcat
     9121 atttatcaag gctttgatta tgctttttga agtactgacg tagaatctag gtatgattca
     9181 tatcggtgag gaaggtgccc agaaaacgga cacatccaat ttgcagggca atgcccagac
     9241 ggttgtgatc acctctgctt tttccgataa attccttgtc tgcttcatca aggtgaaaat
     9301 atcgtgccag ctgaagctca tccggttcac cggtgaatct gccatagctt tcagtctgct
     9361 cagtggtcag aaagtcaacg ggcatatcgg cctccctgcc tgacgggcat ttagtaacat
     9421 ttttccaacc gtacgaaatg ttataaatta tcggacatcg taaaactgtt acattaatat
     9481 gtctattaaa tcgtaaattt gtaataatag acatgagttg tccgatattc gatttaaggt
     9541 acatttttat gcgacttttt ggttacgctc gggtctcaac cagtcagcag tctcttgatc
     9601 ttcaggtcag agcactcaaa gacgcaggtg tgaaagcaaa ccgtatattt accgataagg
     9661 catccggcag ttcaacagac cgggaagggc tggatttgct gaggatgaag gtggaggaag
     9721 gtgatgtcat tctggttaag aagctcgacc gtcttggccg cgacactgcc gatatgatcc
     9781 aactgataaa ggaatttgac gctcagggcg tggcagtccg gttcattgat gacgggatca
     9841 gtaccgacgg
//
LOCUS       DADMHM010000147         9846 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.150, whole genome shotgun sequence.
ACCESSION   DADMHM010000147 DADMHM010000000
VERSION     DADMHM010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9846)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9846)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9846
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.150"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            104..1000
                     /locus_tag="JN125_003083"
     CDS             104..1000
                     /locus_tag="JN125_003083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase family oxidoreductase"
                     /protein_id="HAY8872771.1"
                     /translation="MVQRITIAPQGPEFSRFVMGYWRLMDWNMSARQLVSFIEEHLDL
                     GVTTVDHADIYGGYQCEAAFGEALKLAPHLCERMEIVSKCGIATTAREENVIGHYITD
                     RDHIIKSAEQSLINLATDHLDLLLIHRPDPLMDADEVADAFKHLHQSGKVRHFGVSNF
                     TPAQFALLQSRLPFTLATNQVEISPVHQPLLLDGTLDQLQQLRVRPMAWSCLGGGRLF
                     NDDYFQPLRDELAVVAEELNAGSIEQVVYAWVLRLPSQPLPIIGSGKIERVRAAVEAE
                     TLKMTRQQWFRIRKAALGYDVP"
     gene            1081..1602
                     /gene="sodC"
                     /locus_tag="JN125_003084"
     CDS             1081..1602
                     /gene="sodC"
                     /locus_tag="JN125_003084"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Cu-Zn] SodC2"
                     /protein_id="HAY8872772.1"
                     /translation="MKRFSLAILALVVATGAQAASEKVEMNLVTSQGVGQSIGSVTIT
                     ETDKGLEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKASAAESAGGHLDPQNTGKHE
                     GPEGAGHLGDLPALVVNNDGKATDAVITPRLKSLDEIKDKALMVHVGGDNMSDQPKPL
                     GGGGERYACGVIK"
     gene            complement(1603..3615)
                     /locus_tag="JN125_003085"
     CDS             complement(1603..3615)
                     /locus_tag="JN125_003085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HAY8872773.1"
                     /translation="MNASSWSLRNLPWFKATLAQWRYALRNTIAMCLALTVAYYLNLD
                     EPYWAMTSAAVVSFPTVGGVISKSLGRIAGSLLGAIAALLLAGHTLNEPWFFLLSMSA
                     WLGFCTWACAHFTNNVAYAFQLAGYTAAIIAFPMVNITEASQLWDIAQARVCEVIVGI
                     LCGGMMMMILPSSSDATALLTALKNMHAQLLEHASLLWQPETNDAIRAAHEGGIGQIL
                     TMNLLRIQAFWSHYRFRQQNARLNALLHQQLRMTSVISSLRRMLLNWPSPPGATREIL
                     EQLLTALASSQTDAYTVARIIAPLRPTNVADYRHVAFWQRLRYFCRLYLQSSQELHRL
                     QSGVDDHARLARTSALARHTDNAEAMWSGLRTFCTLMMIGAWSIASQWDAGANALTLA
                     AISCVLYSAVAAPFKSLSLLMRTLVLLSLFSFVVKFGLMVQISDLWQFLLFLFPLLAT
                     MQLLKLQMPKFAALWGQLIVFMGSFIAVTNPPVYDFADFLNDNLAKIVGVALAWLAFA
                     ILRPGSDARKSRRHIRALRRDFVDQLSRHPTLSESEFESLTYHHVSQLSNSQDALARR
                     WLLRWGVVLLNCSHVVWQLRDWESSSDPLSRVRDNCISLLRGVMSERGVQQKSLAATL
                     EELQRICDSLARHHQPAARELAAIVWRLYCSLSQLEQAPPQGTQAS"
     gene            complement(3615..4472)
                     /locus_tag="JN125_003086"
     CDS             complement(3615..4472)
                     /locus_tag="JN125_003086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310380.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HAY8872774.1"
                     /translation="MSIKTIKYFSTIIVAIVAVLAGWWLWNYYMQSPWTRDGKIRAEK
                     VSITPQVSGRIVELNIKDNQLVNAGDLLLTIDKTPFQIAELNAQAQLAKAQSDLAKAN
                     NEANRRRHLSQNFISAEELDTANLNVKAMQASVNAAQATLKQTQWQLAQTEIRAPVSG
                     WVTNLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSDNKT
                     LRGHVSSIGRAIYDQSVESYSSLIPDVKPNVPWVRLAQRVPVRFALDKVPGDVTLVSG
                     TTCSIAVGQ"
     gene            complement(4538..4711)
                     /locus_tag="JN125_003087"
     CDS             complement(4538..4711)
                     /locus_tag="JN125_003087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000670993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1656 domain-containing protein"
                     /protein_id="HAY8872775.1"
                     /translation="MKFMLNATGLPLQDLVFGASVYFPPFFKAFAFGFVIWLVVHRLL
                     RGWIYAGDIWHPL"
     gene            4912..5346
                     /gene="slyA"
                     /locus_tag="JN125_003088"
     CDS             4912..5346
                     /gene="slyA"
                     /locus_tag="JN125_003088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416159.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator SlyA"
                     /protein_id="HAY8872776.1"
                     /translation="MESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQLP
                     PDQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLISE
                     MEAVINKTCAEILHGISAEELEQLITLIAKLEHNIIELQAKG"
     gene            complement(5393..5860)
                     /gene="slyB"
                     /locus_tag="JN125_003089"
     CDS             complement(5393..5860)
                     /gene="slyB"
                     /locus_tag="JN125_003089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein SlyB"
                     /protein_id="HAY8872777.1"
                     /translation="MIKRVLVVSMVGLSLVGCVNNDTLSGDVYTASEAKQVQNVSYGT
                     IVNVRPVQIQGGDDSNVIGAIGGAVLGGFLGNTVGGGTGRSLATAAGAVAGGVAGQGV
                     QSAMNKTQGVELEIRKDDGNTIMVVQKQGNTRFSPGQRVVLASNGSQVTVSPR"
     gene            6134..7243
                     /gene="anmK"
                     /locus_tag="JN125_003090"
     CDS             6134..7243
                     /gene="anmK"
                     /locus_tag="JN125_003090"
                     /EC_number="2.7.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anhydro-N-acetylmuramic acid kinase"
                     /protein_id="HAY8872778.1"
                     /translation="MKSGRFIGVMSGTSLDGVDVVLATIDEHRVAQLASLSWPIPVSL
                     KQAVLDICQGQQLTLSQFGQLDTQLGRLFADAVNALLKEQNLQARDIVAIGCHGQTVW
                     HEPTGVAPHTLQIGDNNQIVARTGITVVGDFRCRDIALGGQGAPLVPAFHHALLAHPT
                     ERRMVLNIGGIANLSLLIPGQPVGGYDTGPGNMLMDAWIWRQAGKPYDKDAEWARAGK
                     VILPLLQNMLSDPYFSQPAPKSTGREYFNYGWLERHLRHFPGVDPRDVQATLAELTAV
                     TISEQVLLSGGCERLMVCGGGSRNPLLMARLAALLPGTEVTTTDAVGISGDDMEALAF
                     AWLAWRTLAGLPGNLPSVTGASQETVLGAIFPANP"
     gene            7341..7670
                     /gene="mliC"
                     /locus_tag="JN125_003091"
     CDS             7341..7670
                     /gene="mliC"
                     /locus_tag="JN125_003091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416156.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C-type lysozyme inhibitor"
                     /protein_id="HAY8872779.1"
                     /translation="MSMKKLLLICLPVLLTGCSAFNQLVEHMQTATLEYQCDEKPLTV
                     KLNNPRQEVSFVYDNQLLHLKQGISASGARYTDGIYVFWSKGDEATVYKRDRIVLNNC
                     QLQNPQR"
     gene            7729..8385
                     /gene="pdxH"
                     /locus_tag="JN125_003092"
     CDS             7729..8385
                     /gene="pdxH"
                     /locus_tag="JN125_003092"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase"
                     /protein_id="HAY8872780.1"
                     /translation="MSDNDELQQIAHLRREYTKGGLRRRDLPADPLTLFERWLSQACE
                     AKLADPTAMVVATVDEHAQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLL
                     FPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKF
                     LELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP
                     "
     gene            8514..9788
                     /gene="tyrS"
                     /locus_tag="JN125_003093"
     CDS             8514..9788
                     /gene="tyrS"
                     /locus_tag="JN125_003093"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HAY8872781.1"
                     /translation="MASSNLIKQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTA
                     DSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVD
                     KIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQR
                     LNREDQGISFTEFSYNLLQGYDFACLNKQYGVVLQIGGSDQWGNITSGIDLTRRLHQN
                     QVFGLTVPLITKADGTKFGKTEGGAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFT
                     FMSIEEINALEEEDKNSGKAPRAQYVLAEQVTRLVHGEEGLQAAKRITECLFSGSLSA
                     LSEADFEQLAQDGVPMVEMEKGADLMQALVDSELQPSRGQARKTIASNAITINGEKQS
                     DPEYFFKEEDRLFGRFTLLRRGKKNYCLICWK"
BASE COUNT         2561 a         2438 c         2544 g         2303 t
ORIGIN      
        1 acgcgcaaat aagccagcgt catcagacga accggagcaa ccatcactct tttgaaccta
       61 atcttgcgta tactcctctc atatctgata agaggaagcg attatggttc agcgtattac
      121 tattgcgccg caaggcccgg agttttcccg ttttgtgatg ggctactggc gattgatgga
      181 ctggaatatg tccgcccgcc agctggtcag ttttattgaa gagcatctgg atctcggcgt
      241 gaccaccgtg gaccatgctg atatttatgg tggctatcag tgcgaagcgg cgtttggcga
      301 ggcactgaaa ctggcacctc acctgtgtga acggatggaa atcgtcagta aatgcggtat
      361 cgcgacgacc gcgcgtgaag aaaacgtcat tggtcattac atcactgacc gcgatcacat
      421 cattaagagc gccgaacagt cgctaattaa tctcgcgacc gatcatctgg atctgctgtt
      481 aatccaccga ccagacccgt taatggatgc cgatgaagtg gcggacgcgt tcaaacatct
      541 gcatcagagc ggcaaagtgc gtcattttgg cgtatcgaac tttacgcctg cgcaatttgc
      601 cctgttgcaa tcacgtctgc cgtttaccct tgccactaat caggtggaaa tatccccggt
      661 gcatcagccg ttactgctgg atggcacgct cgaccaacta caacaactgc gtgttcgtcc
      721 gatggcgtgg tcctgccttg gtggtggtcg tctgtttaat gatgattatt tccagccgct
      781 gcgtgatgaa ctggctgtgg tggcagagga gttaaacgcg ggctcgattg aacaggtggt
      841 ttacgcctgg gtattacgtt taccatcgca gccgctgcca attatcggtt caggtaaaat
      901 tgagcgcgta cgggcagctg tcgaagcaga aacactgaaa atgacccgtc aacaatggtt
      961 tcgtatccgt aaagcggcac tggggtacga cgtaccgtaa gcacttttag gaatagccgc
     1021 cgttcaaaaa tgtgtcactg gtttacactt attcaggaat gcacaatgaa cggaggtcct
     1081 atgaaacgtt ttagtctggc tattctggcg ctggttgttg caaccggcgc acaagctgcc
     1141 agtgaaaaag tcgagatgaa cctcgtcacg tcgcaagggg tagggcagtc aattggtagc
     1201 gtcaccatta ctgaaaccga taaaggtctg gagttttcgc ccgatctgaa agcattaccc
     1261 cccggtgaac atggcttcca tattcatgcg aaaggaagct gccagccagc caccaaagat
     1321 ggcaaagcca gcgccgcgga atccgcaggc gggcatcttg atccacaaaa taccggtaaa
     1381 catgaagggc cagaaggtgc cgggcattta ggcgatctgc ctgcactggt cgtcaataat
     1441 gacggcaaag ctaccgatgc cgtcatcacg cctcgtctga aatcactgga tgaaatcaaa
     1501 gacaaagcgc tgatggtcca cgttggcggc gataatatgt ccgatcaacc taaaccgctg
     1561 ggcggtggcg gtgaacgcta tgcctgtggt gtaattaagt aattaagagg cctgcgtacc
     1621 ttgcggtggt gcttgctcaa gttgcgaaag cgagcagtac agccgccaga caattgccgc
     1681 cagctcacgg gcggcaggtt gatgatgacg ggcaaggctg tcgcaaatcc gctgtaattc
     1741 ttcaagtgtg gccgccagtg atttttgctg aacgccacgc tcactcatca ctccccgcaa
     1801 cagtgaaata cagttatccc gtactcgcga taacggatcg gaactcgatt cccagtcgcg
     1861 caattgccag acaacatgag aacagttcag cagcactaca ccccagcgta ataaccaacg
     1921 gcgagccagc gcatcctggc tgttactcaa ctgactgacg tgatgataag tgagcgattc
     1981 aaattcgctt tcactcagtg ttggatggcg gcttagctga tcgacaaaat cccggcgcag
     2041 cgcgcgaata tggcggcggc ttttacgagc atccgatcct ggacgcagaa tggcgaacgc
     2101 tagccaagcc agcgcaacgc caacgatttt tgccagatta tcgttaagaa aatcagcaaa
     2161 atcatacacc gggggattag tgacagcgat aaacgaaccc ataaaaacaa tcagttgccc
     2221 ccacagtgcg gcaaatttgg gcatctgcaa tttaagaagc tgcattgtcg ccagcagtgg
     2281 aaagagaaac agtaaaaatt gccacagatc gctaatctgg accatcaggc caaatttgac
     2341 cacaaagctg aatagcgaaa gtaacaccag cgtgcgcatc agcagtgaca acgacttaaa
     2401 cggtgctgcg acggcggagt agagtacgca gctaattgct gccagcgtta atgcattggc
     2461 accggcatcc cattgcgatg caatactcca tgcgccaatc atcatcaacg tacaaaatgt
     2521 acgcagcccg ctccacatag cttcggcgtt gtcggtatga cgagccagag cggatgtccg
     2581 tgcgagtctg gcatgatcat ctacaccgct ttgcagacga tgtaattcct gactactttg
     2641 cagataaagg cggcaaaaat aacgtagtcg ctgccagaag gcgacgtgcc ggtagtcggc
     2701 gacgttggtc gggcgtagcg gggcgataat acgtgcgacg gtgtaagcat ctgtttgcga
     2761 actggcgagc gccgtcagca attgttcgag aatttctcgc gtggcacctg gcggtgaggg
     2821 ccagttgagc aacatacgtc gcaggctgga gatgacactg gtcatacgta attgctggtg
     2881 gagtagcgca ttaaggcgcg cgttttgctg gcgaaaacga tagtggctcc agaaagcctg
     2941 gatacgcagc aaattcatgg tcagtatctg cccaatcccc ccctcatgtg ctgcacgaat
     3001 ggcatcgttt gtttcaggct gccagagtaa actggcatgt tccagtaatt gggcgtgcat
     3061 gtttttcaat gcggttaaaa gggctgtagc atcggaactg ctaggcagga tcatcatcat
     3121 catgccgccg cacaaaatac cgactatcac ctcgcaaacg cgcgcctgag cgatatccca
     3181 cagctggctg gcctcagtaa tattaaccat cggaaaggcg atgatggcag ccgtgtagcc
     3241 cgccagttga aatgcatacg cgacgttatt cgtgaagtgc gcacaggccc aggtacaaaa
     3301 gccaagccac gccgacatgc tcaatagaaa aaaccacggc tcattgagcg tatgcccggc
     3361 aagaagcagt gccgcaatgg ctcccagtaa actgccagcg atgcgtccga ggcttttgct
     3421 gatgacaccg ccaacggtgg gaaagctaac cactgcagcc gaggtcatcg cccaataggg
     3481 ttcatccaga ttcaaataat aggcaaccgt cagcgccaga cacatggcaa tggtattgcg
     3541 taacgcataa cgccattgcg ccagcgtggc cttgaaccag ggcaaattgc gcaaggacca
     3601 tgacgatgcg ttcattattg acctacggca atgctacagg tggtgcccga caccagcgtg
     3661 acatcgcctg gaactttatc cagcgcaaag cggacgggaa cgcgttgggc gagacgaacc
     3721 caggggacgt taggtttcac atccggaata aggcttgagt aactttcaac gctttgatca
     3781 taaatcgccc gaccgatact ggaaacgtga ccccgtaacg ttttgttatc actatagagg
     3841 gtaatttgtg ctggtgcacc ttcgcggata tggcgcaact tggtttcttc aaaataacca
     3901 atgacgtaaa acgagtggct gtcgacaagg gcaaacagcg gtttcccggt gtcagcgtaa
     3961 tcgccgatgc gggtagtgag gttagtcacc caaccactca ccggggcgcg aatttccgtt
     4021 tgcgccagtt gccattgtgt ctgtttcagc gtggcctgtg cggcattaac actggcctgc
     4081 atcgctttaa cattgaggtt agcggtatcg agttcttcgg cagaaataaa attttgtgag
     4141 agatgacgac gacgattcgc ttcgttattg gcttttgcga ggtcagattg cgctttcgcc
     4201 agctgagcct gtgcgttcag ctcggcgatc tgaaagggcg ttttatcgat cgtgagcaga
     4261 agatcccccg cgttaaccag ttggttgtct tttatattca gctcaacaat acgtcccgac
     4321 acctgtgggg tgatagaaac cttttctgcg cgtattttcc cgtcgcgtgt ccacggagat
     4381 tgcatgtaat aattccacag ccaccatccg gcaagaaccg caactatcgc tacaatgatt
     4441 gttgagaaat acttaattgt tttaattgac atagttacca cgcaatcagt attgccagag
     4501 caaggcaaac gcaaatcgca aacagcgata aatccattta caagggatgc cagatgtcac
     4561 cggcgtagat ccagccacga agcaggcggt gtacgacaag ccagatgacg aatccaaacg
     4621 cgaaggcttt gaaaaacgga ggaaaataga cggacgcacc gaacaccaga tcttgtaagg
     4681 gcaatcctgt tgcattgagc ataaacttca caaagtagat tcctttacga ccgaatatat
     4741 tgcgttagat taataaatat tctttaagtg cgaaaaattt acgcgcaatt tctgaaaaat
     4801 atgtctgacg gtaaccaaat gcagcaatac atttgtttta gcaataaaat tgctgcacac
     4861 tattctaaaa gccgcataat atcttagcaa gctaattata aggagatgaa attggaatcg
     4921 ccactaggtt ctgatctggc acggttggtg cgcatatggc gtgctctgat agaccatcgc
     4981 ctgaaaccgc tggagttaac acaaacccat tgggttacgt tacacaatat ccatcagtta
     5041 cctccagacc agtcgcaaat tcaactggca aaagcgattg gcatcgagca gccatcactg
     5101 gtccgtactc tggaccaact ggaagaaaaa gggttaattt cgcgtcaaac ttgtgccagc
     5161 gatcgtcggg ctaaacgtat taaactgacg gaaaaggcag agccactgat cagcgaaatg
     5221 gaagctgtta ttaacaaaac ctgcgcggaa atattacatg gcatctccgc agaggaactg
     5281 gagcaactga ttacgctcat cgcaaaactt gagcataata tcattgagtt acaggccaaa
     5341 gggtgaaatg aagggggcgt gtggtcagta acctgaccac acgcaaactt atttagcgcg
     5401 gagaaacggt cacctgactg ccattgctgg ccagtacgac acgttggccc ggagagaaac
     5461 gagtgttgcc ttgtttctgt accaccatga tggtattacc atcgtcttta cgaatttcca
     5521 gctcgacacc ctgcgttttg ttcattgcac tctgtacgcc ctgaccagct acgccacctg
     5581 caacagcgcc tgctgcagta gccagagaac gcccggttcc gccaccaaca gtattcccca
     5641 ggaaaccacc aagaacagca ccgccaattg caccgataac gttggaatca tcaccgccct
     5701 gaatctgtac cggacgtacg ttaacgatgg tgccatagct gacattttgt acttgtttcg
     5761 cttcagaagc ggtataaaca tcccctgaca gggtgtcgtt attaacacaa ccgacaagag
     5821 acagacctac cattgaaaca accaatacgc gtttaatcat tgaaaaatct cctgttcacc
     5881 atgaaacgcc acgcaagcat ccctcatggt caaagtatat ggcatatgtg aatccatggt
     5941 tacatgttct accaaatatg agcaaatcat aatgaaagta ggatcaacca attataaaca
     6001 aaacattcat gatgattatt gatttgaaga taatgtttta ctaccaacgg taaaaatcgg
     6061 tcattccgca tggtattcac gaaaagttta tgtttgagtg gtgcgcaaac gtcagattga
     6121 aaaaggatga actatgaaat cgggccgctt tattggcgtt atgtcaggca ccagccttga
     6181 tggtgttgat gttgtgttgg cgacaataga tgaacaccgg gtcgcacagc tggcaagctt
     6241 gagctggccg atcccggtgt ctctgaaaca ggctgtactg gatatttgcc agggccagca
     6301 gcttacactt tcgcagtttg gacagcttga tactcaactc gggcgacttt ttgctgatgc
     6361 ggtcaatgcc ttgcttaagg aacaaaacct gcaggcgaga gatatagttg cgatcggctg
     6421 tcacggtcaa accgtctggc atgaaccgac gggcgtggca ccacacactt tacagattgg
     6481 cgataacaat caaattgtgg cacgcaccgg aattacggtt gtcggtgatt ttcgctgtcg
     6541 cgatattgcc ttgggaggac aaggcgcacc gctggtacct gcgttccatc atgccttgct
     6601 ggctcaccca accgagcgac gaatggtgct caatattggc ggcatcgcca atctgtcact
     6661 gctcattcct gggcagccgg ttggcggcta cgataccggt cctggtaaca tgctgatgga
     6721 tgcctggatc tggcgtcagg ccggtaaacc ttacgataaa gatgccgagt gggcacgggc
     6781 gggtaaagtt attctcccac tgctgcaaaa tatgctcagc gacccatatt tctcgcaacc
     6841 tgcaccgaaa agcaccggac gcgaatactt taactacggc tggctggagc gccatttacg
     6901 ccattttccg ggtgttgatc cccgtgatgt tcaggccaca ctggcagaac tcaccgccgt
     6961 gaccatttct gaacaagttt tgttgagcgg tggctgcgaa cgattgatgg tatgtggtgg
     7021 aggtagtcgt aatccgctac tcatggcgcg tctggcggca ttactgccag gcacagaagt
     7081 caccaccacc gatgccgttg gcattagtgg cgatgacatg gaagcattgg ctttcgcctg
     7141 gcttgcctgg cggacgctgg cgggattacc aggaaatctg ccttccgtca ctggcgcaag
     7201 ccaggagacg gtactggggg ctattttccc tgctaacccg tgatatcaga gttaactgaa
     7261 tttttcttac cgcgtctgcc gttacacttg gaacgttagg gagggcgtat tgccctccag
     7321 accaggaaag tcttcgggaa atgtctatga aaaaactgtt actgatctgt ttgccggtgc
     7381 ttctcaccgg ctgtagcgcg ttcaatcaac tggttgagca catgcaaacc gctacgctgg
     7441 aataccagtg tgatgaaaaa ccgttgacgg tcaaactgaa taatccgcgc caggaagtca
     7501 gttttgttta cgataatcaa ctactgcatc tcaaacaggg catttcagcg tctggtgcac
     7561 gttacactga cggaatctat gttttctggt cgaaaggcga tgaagcgact gtctataaac
     7621 gcgaccgcat cgtattgaat aactgtcagt tacaaaatcc acagcgttga gatttttcca
     7681 ggggcggcgc acaatagcgt cacccactga caatccgtaa agaaaaccat gtctgataac
     7741 gacgaattgc agcaaatcgc gcatctgcgc cgtgaataca ccaaaggcgg gttacgccgt
     7801 cgcgatcttc ccgccgatcc attaaccctt tttgaacgtt ggctctctca ggcgtgtgaa
     7861 gccaaactgg cagaccctac cgcgatggtg gtcgctaccg tggatgaaca tgctcagcct
     7921 tatcaacgca tcgttttact caaacattac gacgaaaaag gcatggtgtt ttacaccaac
     7981 ctcggtagcc gtaaagcaca tcaaattgaa aataatccgc gcgttagcct gctgttcccg
     8041 tggcataccc ttgaacgcca ggtgatggtg atcggtaaag cagaacgact ttcgactctc
     8101 gaagtgatga aatattttca tagccgcccg cgtgatagcc agattggtgc atgggtttcg
     8161 aagcagtcca gtcgcatttc tgcccgcggt atccttgaaa gtaaattcct ggagctgaag
     8221 cagaagtttc aacagggcga agtgccattg ccgagctttt ggggcggttt tcgcgtcagc
     8281 cttgaacaga ttgagttctg gcagggcggt gagcatcgcc tgcatgaccg ctttttgtac
     8341 cagcgagaaa atgatgcgtg gaagattgat cgtcttgcac cctgaaaaga tgcaaaaatc
     8401 ttgctttaat cgctggtact cctgattctg gcactttatt ctatgtctct ttcgcatctg
     8461 gcgaaaagtc gtgtaccggc aaaggtgcag tcgttatata catggagatt ttgatggcaa
     8521 gcagtaactt gattaaacaa ttgcaagagc gggggctggt agcccaggtg acggacgagg
     8581 aagcgttagc agagcgactg gcgcaaggcc cgatcgcgct ctattgcggc ttcgatccta
     8641 ccgctgacag cttgcatttg gggcatcttg ttccattgtt atgcctgaaa cgcttccagc
     8701 aggcgggcca caagccggtt gcgctggtag gcggcgcgac gggtctgatt ggcgacccga
     8761 gcttcaaagc tgccgagcgt aagctgaaca ccgaagaaac tgttcaggag tgggtggaca
     8821 aaatccgtaa gcaggttgcc ccgttcctcg atttcgactg tggagaaaac tctgctatcg
     8881 cggcgaacaa ctatgactgg ttcggcaata tgaatgtgct gaccttcctg cgcgatattg
     8941 gcaaacactt ctccgttaac cagatgatca acaaagaagc ggttaagcag cgtctcaacc
     9001 gtgaagatca ggggatttcg ttcactgagt tttcctacaa cctgttgcag ggttatgact
     9061 tcgcctgtct gaacaaacag tacggtgtgg tgctgcaaat tggtggttct gaccagtggg
     9121 gtaacatcac ttctggtatc gacctgaccc gtcgtctgca tcagaatcag gtgtttggcc
     9181 tgaccgttcc gctgatcact aaagcagatg gcaccaaatt tggtaaaact gaaggcggcg
     9241 cagtctggtt ggatccgaag aaaactagcc cgtacaaatt ctaccagttc tggatcaaca
     9301 ctgcggatgc cgacgtttac cgcttcctga agttcttcac ctttatgagc attgaagaga
     9361 tcaacgccct ggaagaagaa gataaaaaca gcggtaaagc accgcgcgcc cagtatgtac
     9421 tggcggagca ggtgactcgt ctggttcacg gtgaagaagg tttacaggcg gcaaaacgta
     9481 ttaccgaatg cctgttcagc ggttctttga gtgcgctgag tgaagcggac ttcgaacagc
     9541 tggcgcagga cggcgtaccg atggttgaga tggaaaaggg cgcagacctg atgcaggcgc
     9601 tggtcgattc tgaactgcaa ccttcccgtg gtcaggcgcg taaaactatc gcctccaatg
     9661 ccatcaccat taacggtgaa aaacagtccg atcctgaata cttctttaaa gaagaagatc
     9721 gtctgtttgg tcgttttacc ttactgcgtc gcggcaaaaa gaattactgt ctgatttgct
     9781 ggaaataatg cattaagtgg aaagggggag tgagaaatca ctccccctgg tttttataca
     9841 gggaac
//
LOCUS       DADMHM010000148         9826 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.151, whole genome shotgun sequence.
ACCESSION   DADMHM010000148 DADMHM010000000
VERSION     DADMHM010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9826
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.151"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(174..1523)
                     /gene="lysC"
                     /locus_tag="JN125_003094"
     CDS             complement(174..1523)
                     /gene="lysC"
                     /locus_tag="JN125_003094"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine-sensitive aspartokinase 3"
                     /protein_id="HAY8872782.1"
                     /translation="MSEIVVSKFGGTSVADFDAMNRSADIVLSDANVRLVVLSASAGI
                     TNLLVALAEGLEPGERFEKLDAIRNIQFAILERLRYPNVIREEIERLLENITVLAEAA
                     ALATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDVA
                     ALAELAALQLLPRLNDGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVD
                     IWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFV
                     GSSKDPRAGGTLVCNKTENPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILAR
                     HNISVDLITTSEVSVALTLDTTGSTSTGDTLLTQSLLMELSALCRVEVEEGLALVALI
                     GNDLSKACGVGKEVFGVLEPFNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNLFE"
     gene            2048..3697
                     /gene="pgi"
                     /locus_tag="JN125_003095"
     CDS             2048..3697
                     /gene="pgi"
                     /locus_tag="JN125_003095"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HAY8872783.1"
                     /translation="MKNINPTQTAAWQALQKHFDEMKDVTIADLFAKDGDRFSKFSAT
                     FDDQMLVDYSKNRITEETLAKLQDLAKECDLAGAIKSMFSGEKINRTENRAVLHVALR
                     NRSNTPILVDGKDVMPEVNAVLEKMKTFSEAIISGEWKGYTGKAITDVVNIGIGGSDL
                     GPYMVTEALRPYKNHLNMHFVSNVDGTHIAEVLKKVNPETTLFLVASKTFTTQETMTN
                     AHSARDWFLKAAGDEKHVAKHFAALSTNAKAVGEFGIDTANMFEFWDWVGGRYSLWSA
                     IGLSIVLSIGFDNFVELLSGAHAMDKHFSTTPAEKNLPVLLALIGIWYNNFFGAETEA
                     ILPYDQYMHRFAAYFQQGNMESNGKYVDRNGNVVDYQTGPIIWGEPGTNGQHAFYQLI
                     HQGTKMVPCDFIAPAITHNPLSDHHQKLLSNFFAQTEALAFGKSREVVEQEYRDQGKD
                     PATLDYVVPFKVFEGNRPTNSILLREITPFSLGALIALYEHKIFTQGVILNIFTFDQW
                     GVELGKQLANRILPELKDDKEISSHDSSTNGLINRYKAWRG"
     gene            4159..4401
                     /locus_tag="JN125_003096"
     CDS             4159..4401
                     /locus_tag="JN125_003096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872784.1"
                     /translation="MKKVLYGIFAISALAATSAWAAPVQVGEAAGSAATSVSAGSSSA
                     TSVSTVSSAVGVALAATGGGDGSNTGTTTTTTTSTQ"
     gene            4515..5152
                     /locus_tag="JN125_003097"
                     /pseudo
     CDS             4515..5152
                     /locus_tag="JN125_003097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418451.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YjbF family lipoprotein"
     gene            5149..5886
                     /locus_tag="JN125_003098"
     CDS             5149..5886
                     /locus_tag="JN125_003098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis GfcC family protein"
                     /protein_id="HAY8872785.1"
                     /translation="MIKQTFVALLLSVGASSVFAAGTVKVFSNGSSEAKTLTGAEHLI
                     DLVGQPRLANSWWPGAVISEELATAAALRQQQALLTRLAEQAADSSADDAAAINALRQ
                     QIQALKVTGRQKINLDPDIVRVAERGNPPLQGNYTLWVGPPPSTVTLFGLISRPGKQP
                     FTPGRDVASYLSGQNLLSGADRSYAWVVYPDGRTQKAPVAYWNKRHVEPMPGSIIYVG
                     LADSVWSETPDALNADILQTLTQRIPQ"
     gene            5886..7982
                     /locus_tag="JN125_003099"
     CDS             5886..7982
                     /locus_tag="JN125_003099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbH domain-containing protein"
                     /protein_id="HAY8872786.1"
                     /translation="MKKRHLLSLLALGISMACYGETYPAPIGPSQSDFGGVGLLQTPT
                     ARMAREGELSLNYRDNDQYRYYSASVQLFPWLETTLRYTDVRTRQYSSVEAFSGDQTY
                     KDKAFDLKLRLWEESYWLPQVAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGY
                     LGTSGNVKNPLCSASDKYCYRDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRL
                     KLEYEGNNYQQDFAGKLEQKSKFNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFN
                     DLRPSYNDNARPQYQPQPQDAILQHSVVANQLTLLKYNAGLADPQIQAKGDTLYVTGE
                     QVKYRDSREGIIRANRIVMNDLPDGIKTIRITENRLNMPQVTTETDVASLKNHLAGEP
                     LGHETKLAQKRVEPVVPQSTEQGWYIDKSRFDFHIDPVLNQSVGGPENFYMYQLGVIG
                     MADLWLTDHLLTTGSLFANLANNYDKFNYTNPPQDSHLPRVRTHVREYVQNDVYVNNL
                     QANYFQHLGNGFYGQVYGGYLETMFGGAGAEVLYRPLDSNWAFGLDANYVKQRDWRSA
                     KDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASVGQYLAGDKGGTLEIAKRFDSGVVV
                     GGYATITNVLKEEYGEGDFTKGVYVSVPLDLFSSGPTRSRAAIGWTPLTRDGGQQLGR
                     KFQLYDMTSDRSVNFR"
     gene            complement(8029..8307)
                     /locus_tag="JN125_003100"
     CDS             complement(8029..8307)
                     /locus_tag="JN125_003100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872787.1"
                     /translation="MKRNLIKVVKMKPYFAALMLSVSVLPAYAGPLGTADKADLPQSN
                     VSSPMMAQSLRQPDLQPISTDRKTECFRLYTPDRKPGVNCVPDGSTGH"
     gene            8577..8975
                     /gene="psiE"
                     /locus_tag="JN125_003101"
     CDS             8577..8975
                     /gene="psiE"
                     /locus_tag="JN125_003101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate-starvation-inducible protein PsiE"
                     /protein_id="HAY8872788.1"
                     /translation="MTSLSRPRVEFISTILQTVLNLGLLCLGLILVVFLGKETVHLAD
                     VLFAPEQTSKYELVVYFLYFEFIALIVKYFQSGFHFPLRYFVYIGITAIVRLIIVDHK
                     SPLDVLIYSAAILLLVITLWLCNSKRLKRE"
     gene            complement(9019..9826)
                     /locus_tag="JN125_003102"
                     /pseudo
     CDS             complement(9019..9826)
                     /locus_tag="JN125_003102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313041.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="sugar porter family MFS transporter"
BASE COUNT         2400 a         2545 c         2597 g         2284 t
ORIGIN      
        1 ttctcttaac tatttatctc tttcgataat taattagaga tgcagataaa aaaattaaag
       61 gcaattattc tcgataaaga cgttggttaa cagagtacag gctcgtttat tgataagcat
      121 agtgacaaga aaatcaatac ggcccgaaat atagcttcca ggccatacag tatttactca
      181 aacaaattac tatgcagttt ttgcaccacc tgctcggcat cttcgccggg caccaggaag
      241 cacaggttat ggctggatgc gccgtaacaa atcatgcgaa tgttgaacgg ttccagtacg
      301 ccgaatacct ctttgccaac gccgcaggct tttgacaggt cattgccaat caacgcgacc
      361 agcgccagac cttcttctac ttccacccgg cacagtgcgg aaagctccat cagcagagat
      421 tgcgtcagca acgtatcgcc agtggaggtt gaaccggtgg tatcaagggt taatgccacg
      481 ctcacttctg acgtggtgat taagtctacc gaaatattat gccgcgcgag gatgccgaaa
      541 acttccgcga ggaagccgcg agaatgcagc atattcaggc tgtgcaaagt gagcagagtc
      601 tgattgcgac gaagcgccag cgcgcggaac agcggaggat tttcagtttt attgcacacc
      661 agcgtaccac ctgcgcgtgg gtctttgctg gagccgacaa agaccgggat atcgctgcgt
      721 actgcgggta gcaacgttgc cggatgcagt acttttgcac caaaagttgc catctctgcc
      781 gcttcggcaa acgcgatttc atcaatgcgt tttgctgcgg aaactacgcg tggatcggtg
      841 gtgtagatgc ccgggacgtc ggtccagata tcaacacgag atgcgtgtaa agcctccgcc
      901 agcaaggctg ccgtataatc gctgcctcca cggccaagcg tcgttgtacg acctttattt
      961 tcgctaccga taaatccctg ggtgatcact aagccgtcat tgaggcgtgg gagcagctgc
     1021 agcgcggcca gttccgccag cgcggctaca tctggctctg cacgaccaaa tcggtcgttg
     1081 gtacgcatca ctttacgtac atcaaaccac tgtgcctgaa catcgcgttc gcgcaggatt
     1141 tcgacaaaca gcagggtcga catcagctcg ccgtggctga ccagctcatc tgtcagcgcc
     1201 ggagacgttg ccagcgccgc cgcttctgcc agaacagtaa tgttctccag cagacgttca
     1261 atctcttcac ggataacgtt cgggtaacgc agacgttcca gaatggcaaa ctggatgttg
     1321 cgaatagcgt cgagtttttc gaatcgctcg ccaggttcca gcccttccgc taaagcgacc
     1381 agcagattag tgataccagc agaagccgag aggactacta aacgcacgtt ggcatcagaa
     1441 agcacaatat cagcgctgcg gttcatggcg tcaaaatcag ctacgctggt accgccaaat
     1501 ttggagacaa caatttcaga cataactacc tcgtgtcagg ggatccattt tcagccttgg
     1561 cacaagggaa gagcggaaga cgggtgggcg cagagcgata cttcgctact attttcaccc
     1621 agaagtgctc caccacttgc gaaacgcccg actgcgaacg cttctggtga caacccaggg
     1681 gattcagccc ctgtagccga tgatgaacgt ggccagccgt tcaatcacct cggcgatgca
     1741 ccccctcagg tgttatcaca ggactggctc ctccaacacc gttacttggg caacgcgcct
     1801 cttctggcct gcgctagcgc aggtagtaca tttataaata aagggtgagc ggggcggttg
     1861 tcaacgacgg ggtcatgcgg atttttcatc cactcctggc ggtcagtagt tcagctaata
     1921 aatgcttcac tgcgctaagg gtttacactc aacattacgc taacggcact aaaaccatca
     1981 catttttctg tgactggcgc tacaatcttc caaagtcaca attctcaaaa tcagaagagt
     2041 attgctaatg aaaaacatca atccaacgca gaccgctgcc tggcaggcac tacagaaaca
     2101 cttcgatgaa atgaaagacg ttacgatcgc cgatcttttt gctaaagacg gcgatcgttt
     2161 ttctaagttc tccgcaacat tcgacgatca gatgctggtg gattactcca aaaaccgcat
     2221 cactgaagag acgctggcga aattacagga tctggcgaaa gagtgcgatc tggcgggcgc
     2281 gattaagtcg atgttctctg gcgagaagat caaccgcact gaaaaccgcg ccgtgctgca
     2341 cgtagcgctg cgtaaccgta gcaatacccc gattctggtt gatggcaaag acgtaatgcc
     2401 ggaagtcaac gcggtgctgg agaagatgaa aaccttctcg gaagcgatta tctccggtga
     2461 gtggaagggt tataccggca aagcaatcac tgacgtagtg aacatcggga tcggtggttc
     2521 tgacctcggc ccgtacatgg tgaccgaagc actgcgtccg tacaaaaatc acctgaacat
     2581 gcactttgtt tctaacgtcg atgggactca catcgctgaa gtgctgaaaa aagtaaaccc
     2641 ggaaaccacg ctgttcttgg tagcatctaa aaccttcacc actcaggaaa ctatgaccaa
     2701 cgcccatagc gcgcgtgact ggttcctgaa agcggcaggt gatgaaaaac acgttgcaaa
     2761 acactttgcg gcgctttcca ccaatgccaa agccgttggc gagtttggta ttgatactgc
     2821 caacatgttc gagttctggg actgggtcgg cggccgttac tctttgtggt cagcgattgg
     2881 cctgtcgatt gttctctcca tcggctttga taacttcgtt gaactgcttt ctggcgcaca
     2941 cgcgatggac aagcatttct ccaccacgcc tgccgagaaa aacctgcctg tcctgctggc
     3001 gctgattggc atctggtaca acaatttctt tggtgcggaa actgaagcga ttctgccgta
     3061 tgaccagtat atgcaccgtt tcgcggcgta cttccagcag ggcaatatgg agtccaacgg
     3121 taagtatgtt gaccgtaacg gtaacgttgt ggattaccag actggcccga ttatctgggg
     3181 tgaaccaggc actaacggtc agcacgcgtt ctaccagctg atccaccagg gaaccaaaat
     3241 ggtaccgtgc gatttcatcg ccccggctat cacccataac ccgctctctg atcaccacca
     3301 gaaactgctg tctaacttct tcgcccagac cgaagcgctg gcgtttggta aatcccgcga
     3361 agtggttgag caggaatatc gcgatcaggg taaagatccg gcaacgcttg actacgtggt
     3421 gccgttcaaa gtgttcgaag gtaaccgccc gaccaactcc atcctgctgc gcgaaatcac
     3481 tccgttcagc ctgggggcgt tgattgcgct gtatgagcac aaaatcttta ctcagggcgt
     3541 gatcctgaac atctttacct tcgaccagtg gggcgtggag ttgggtaaac aactggcgaa
     3601 ccgtattctg ccagagctga aagatgacaa agaaatcagc agccacgata gctcgaccaa
     3661 tggtctgatt aaccgctata aagcgtggcg cggttaatca tcatgcgtgc ctgatgccga
     3721 tatgtaggcc ggataaggcg tttacgccgc atccggcaac cggagcctga tgccaatatc
     3781 gacattaatg catagtatga ggagttaaat aaccttaaaa acaatgccga caataagtcg
     3841 gcattgtttt atcagataaa tccccttgtc tgtgatttaa cggaaatcat accgtgaggt
     3901 taatcctaaa atagattttt aatcgttgtt tatttcggag aatacgcaga ttaattactt
     3961 ttgtttttat tttaagttta tgatttttat tgttatttaa atataagttg aagcttatat
     4021 ttgatattca ttccaattgt cctaaaacgc catcgctaat tccccgcgcc gtaattcgca
     4081 tgctttagtt gtgtatactc gatcccgccc gaaatgtttt tgggtaaatc tccattcatt
     4141 caatgaaggg aaattgttat gaaaaaagtt ctgtatggca tttttgccat atctgcgctt
     4201 gcggcgactt ctgcgtgggc tgcacctgta caggtgggcg aagcggcagg gtcggcagca
     4261 acgtcggttt cggcgggtag ttcctccgcg accagcgtca gcaccgtaag ctcggcggtg
     4321 ggtgtcgcgc tcgcggcaac cggtggcggt gatggttcta ataccgggac caccacaacc
     4381 acgaccacca gtacccagta ataaagtatg tatccccaaa ataatttgag tcattgcatc
     4441 tgtggcttga agtatgaagg gatttaccat aaccacactc cggtgtggtt attctgcccc
     4501 tctggagaag agtcgtgaag cgacctgcac tcattcttat ctgcctgcta ttacaggcct
     4561 gttcagccag actaaagagc tgggcaattc actgtgggac agtctgttcg gcacgccagg
     4621 cgtacagctg acggacgatg atattcaaaa tatgccctac gccagccagt acatgcagct
     4681 taatggcggg ccgcaattgt ttgtggtgct ggccttcgct gaagacggac aacaaaaatg
     4741 ggtcactcag gatcaagcca ctcttgtcac acaacatggt cgtctggtga agactttgct
     4801 tggcggcgac aacctgattg aagtgaataa ccttgccgcc gacccgctga ttaaacccgc
     4861 acaaattgtt gatggtgcaa catggacgcg cacgatgggc tggaccgagt accagcaggt
     4921 acgctacgcc accgcacgct cagtcttcaa atgggatggc accgataccg tcaaagtcgg
     4981 cagcgatgaa accctggttc gcgtgctgga cgaagaagtc tccaccgacc aggcgcgctg
     5041 gcataaccgc tactggatcg acagcgaagg gcaaattcgc cagtcggaac agtatctcgg
     5101 cgcggattat ttcccggtga aaaccactct catcaaggcg gcaaaacaat gattaaacaa
     5161 acttttgtcg cgttgctttt gagtgtggga gcgtcatcgg tcttcgcggc aggaaccgtc
     5221 aaggtgttca gcaatggcag cagtgaggcc aaaacactaa caggcgcaga gcatttaatc
     5281 gatctggtag gccaaccgcg gctggcaaac agctggtggc ccggtgcggt gattagcgaa
     5341 gagctggcaa cggcggcagc attgcgtcag cagcaggcgt tgctgacacg gctggctgaa
     5401 caggccgcag actccagcgc cgacgatgcc gccgccatta acgccttacg ccagcaaatt
     5461 caggcgttga aagtgacggg caggcaaaaa atcaatcttg atcccgatat cgtgcgcgtt
     5521 gccgaacgcg gtaacccacc gttgcagggc aactacacgc tgtgggtcgg accaccgccg
     5581 tccacggtca cgttgttcgg gcttatcagc cgtcctggca agcagccatt cactccaggt
     5641 cgcgacgtgg cgagctatct ctccgggcag aacctgctta gcggtgcgga tcgcagctac
     5701 gcgtgggtgg tttacccgga cggacgcacg caaaaagcgc cggtggctta ctggaacaag
     5761 cgtcacgtag agccgatgcc cggcagcatt atttatgttg gcctcgcgga ctccgtctgg
     5821 agtgagacgc ctgatgccct taacgccgac attcttcaga ctctgacgca gcggataccc
     5881 caataatgaa aaaaagacat ctgcttagct tactggcgct gggcattagc atggcttgct
     5941 acggcgaaac atatcctgcg cccattggcc cgtcgcagtc ggatttcggt ggcgtaggat
     6001 tattacaaac gcccaccgca cgcatggcgc gggaagggga gttgagcctg aactatcgcg
     6061 ataacgatca gtaccgttat tactcagctt cagtgcaact cttcccgtgg ctggaaacaa
     6121 cgctgcgcta caccgacgtg cgcacccggc agtacagcag cgtcgaagcg ttctctggcg
     6181 atcaaacgta taaagataaa gccttcgatc tcaaactgcg tttgtgggaa gagagttact
     6241 ggctgccgca agtggcggtt ggtgcgaggg atatcggcgg tacggggctg tttgatgcgg
     6301 aatatcttgt tgccagcaaa gcctgggggc cgttcgattt tacgctcggc ctgggctggg
     6361 gttatctggg caccagcggt aatgtgaaaa atccgctctg ttcagccagt gataaatatt
     6421 gctatcgcga taacagctac aaacaggcgg gatctatcga cggtagccag atgttccacg
     6481 gtcctgcctc actgtttggc ggcgtggaat accagacgcc ctggcaaccg ctgcgcctga
     6541 aactggagta tgaaggcaat aattatcagc aggattttgc cgggaagctg gagcaaaaaa
     6601 gtaagtttaa cgtcggtgcg atttatcgcg ttaccgattg ggccgacgtt aaccttagct
     6661 atgaacgtgg caacaccttt atgtttggcg tcacgctgcg caccaacttt aacgatctgc
     6721 gcccgtctta caacgataac gcccgcccgc aatatcaacc gcagccgcag gatgccattt
     6781 tgcagcattc ggtggtggcg aatcagttaa cgctgttgaa atacaatgcc ggacttgccg
     6841 atccgcagat ccaggcgaaa ggcgatacgc tgtatgtcac cggcgagcag gtgaaatatc
     6901 gtgattcgcg cgaagggatc atccgtgcta atcggatcgt gatgaacgat ctgccggatg
     6961 ggatcaaaac gatccgcatt acggaaaatc gtcttaacat gccgcaggtg acgacggaaa
     7021 ccgatgtcgc cagcctgaaa aatcatctcg ccggagagcc gttgggccac gaaacgaagc
     7081 tggcgcaaaa acgcgtcgag ccagtggttc cgcagtccac cgagcagggc tggtatatcg
     7141 acaaatcacg ctttgatttc catatcgatc cggtgctgaa ccagtcggtc ggtggcccgg
     7201 aaaactttta catgtatcag ctgggcgtga taggaatggc agatttgtgg ctgacggacc
     7261 atctgctgac caccggcagc ctgtttgcaa atcttgccaa caactacgac aagtttaact
     7321 acaccaatcc gccgcaggac tcgcacttac cgcgcgttcg tacccatgtg cgcgagtatg
     7381 tgcagaacga tgtctatgtg aataacctgc aagccaacta cttccagcat ctgggcaacg
     7441 gcttctacgg tcaggtctat ggaggttatc tcgaaaccat gtttggcggt gcgggggccg
     7501 aagtgttgta tcgtccgctg gacagtaact gggcgtttgg tctggatgcc aactacgtta
     7561 aacagcgcga ctggcgtagt gcaaaagata tgatgaaatt caccgactac agcgtgaaaa
     7621 ccggacatct gaccgcctac tggacgccat ctttcgccca ggacgtgttg gtgaaagcca
     7681 gcgtcgggca gtatctggca ggggataaag gcggcacgct ggagatcgcc aaacgctttg
     7741 acagcggcgt ggtggtgggt ggctatgcca cgatcaccaa cgttttgaaa gaggagtacg
     7801 gcgaagggga cttcaccaaa ggcgtgtatg tctcggtacc gttggatctc ttctcgtctg
     7861 gcccgacacg cagccgtgcg gcgattggct ggacgccgct gacgcgtgac ggtggtcagc
     7921 aacttgggcg taagttccag ttgtatgaca tgaccagcga ccgtagcgtc aatttccgct
     7981 aagtcatggg aaaggtgcca gttttcgcac tcactggcac cttcattctt aatggcctgt
     8041 cgagccatca ggaacgcagt tcacccccgg tttgcgatct ggtgtgtaaa ggcgaaaaca
     8101 ttctgtcttc ctgtccgtcg atatcggttg caggtctggt tgcctgagcg actgggccat
     8161 cattgggctg gagacattgc tttgcggtag gtcggcttta tcagcagtac cgagcggacc
     8221 agcataagca ggaagaacag agactgataa catcaaagca gcaaaataag gcttcatttt
     8281 taccaccttt atcaggttac gtttcatttg ttccagagga acattgtcga tttttcgcgc
     8341 attactggtg gctgggaatc acctgaatgg gtgatttttg aattaccggc ttgggtgcgg
     8401 tttgtcttgc cggatgcgcc gccaggcgcg gcttatccgg cctacgggta ggtatatccg
     8461 gctttggtgg aggcgcgctc caaatccagg ttgaacaaaa catacacaaa aaatatagat
     8521 ctccgtcaca tttttgcgtt atacaggaag ctcgccactg tgaaggaggt actgctatga
     8581 cgtcactctc tcgtccgcgc gtggagttta tctccaccat tttgcagacc gtactcaatc
     8641 ttggcctgct gtgcctcggc ctgattttgg ttgtcttcct cggcaaagaa acggtgcatc
     8701 tggcagatgt gctgttcgcg ccagaacaaa ccagcaaata tgagctggtg gtttactttc
     8761 tctatttcga atttatcgcg ctgattgtga agtactttca gtccggtttt cacttcccgc
     8821 tacgttactt tgtctatatt gggatcaccg ccattgtgcg cttgatcatc gtcgatcata
     8881 aatcgccact ggatgtgttg atctactcgg ctgcgatcct gttactggtg atcactctgt
     8941 ggctgtgtaa ttcgaaacgg ctgaagcggg agtaaaaaga cagcacgccg aactggcgcg
     9001 gcgtgctgga caggaagatt acagcgtagc agtttgttgt gttttcttcg tttccggttc
     9061 ccagagggct tccagctcct caagggtttt acctttggtt tccgggacaa atttccacat
     9121 aaatagtgct gccagaacgc ccatacaccc gtaaatccag taggagaaac cgttgtggaa
     9181 atgggccacc agctaggagt ttttgtccat catcgggaag gtccaggaga cgaagtagtt
     9241 cgccagccac tgggccgcca ccgcgattgc cagcgcctta ccacgaatag cattcgggaa
     9301 gatttccgac agcagtaccc agcataccgg accccaggac atggcaaagg cagcaacata
     9361 gaacagcatc gacagtagcg ccacaatacc cggtgcctga gtgtaaaacg cggtaccgag
     9421 gctaaacata ccgattgcca ttccgagtgc gccgataatt tgcagtggct tacgaccaaa
     9481 tttatccacc gtcataattg ccagaacggt gaaggtgagg ttgataactc cgacaataat
     9541 ggtctgcaac agcgcgatat ccgtgctggc ccccagcgtt ttgaacactt ccggcgcgta
     9601 gtacagcacc acattgatgc cgacaaattg ctggaagatg gagagcataa cgccgatgac
     9661 aatcacgccc acgccaaaca tcagcagacg accaccggtt ttgcggccat gatccaggga
     9721 gtgtttaatt tcctgtactg cctgagttgc aagcgtgttg cccataattt tgcgcaggat
     9781 actttccgcc tgttcttgct tgccgcgtga catcagccag cgagga
//
LOCUS       DADMHM010000149         9773 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.152, whole genome shotgun sequence.
ACCESSION   DADMHM010000149 DADMHM010000000
VERSION     DADMHM010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9773)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9773)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9773
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.152"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(81..854)
                     /gene="uxuR"
                     /locus_tag="JN125_003103"
     CDS             complement(81..854)
                     /gene="uxuR"
                     /locus_tag="JN125_003103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Uxu operon transcriptional regulator"
                     /protein_id="HAY8872789.1"
                     /translation="MKSATSAQRPYQEVGAMIRDLIIKTPYNPGERLPPEREIAEMLD
                     VTRTVVREALIMLEIKGLVEVRRGAGIYVLDSSGSHNTDSPDANVCNDAGPFELLQAR
                     QLLESNIAEFAALQATREDIVKMRQALQLEERELASSAPGSSESGDMQFHLAIAEATH
                     NSMLVELFRQSWQWRENNPMWIQLHSHLDDSLYRKEWLGDHKQILAALIKKDARAAKL
                     AMWQHLENVKQRLLEFSNVDDIYFDGYLFDSWPLDKVDA"
     gene            complement(1069..2529)
                     /locus_tag="JN125_003104"
     CDS             complement(1069..2529)
                     /locus_tag="JN125_003104"
                     /EC_number="1.1.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructuronate reductase"
                     /protein_id="HAY8872790.1"
                     /translation="MTTIVDSNLPVARPSWDHSRLESRIVHLGCGAFHRAHQALYTHH
                     LLESTDSDWGICEVNLMPGNDRVLIENLKKQQLLYTVAEKGAESTELKIIGSMKEALH
                     PEIDGCEGILNAMARPQTAIVSLTVTEKGYCADAASGQLDLNNPLIKHDLENPTAPKS
                     AIGYIVEALRLRREKGLKAFTVMSCDNVRENGHVAKVAVLGLAQARDPQLAAWIEENV
                     TFPCTMVDRIVPAATPETLQEIADQLGVYDPCAIACEPFRQWVIEDNFVNGRPDWDKV
                     GAQFVADVVPFEMMKLRMLNGSHSFLAYLGYLGGYETIADTMTNPDYRKAAFALMMQE
                     QAPTLSMPEGTDLKAYATLLIERFSNPSLRHRTWQIAMDGSQKLPQRLLDPVRLHLQN
                     GGSWRHLALGVAGWMRYTQGVDEQGNAIDVVDPMLAEFQKINAQYQGADRVKALLGLS
                     GIFADDLPQNADFVGAVTAAYQQLCERGARECVAAL"
     gene            complement(2610..3794)
                     /gene="uxuA"
                     /locus_tag="JN125_003105"
     CDS             complement(2610..3794)
                     /gene="uxuA"
                     /locus_tag="JN125_003105"
                     /EC_number="4.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709912.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannonate dehydratase"
                     /protein_id="HAY8872791.1"
                     /translation="MEQTWRWYGPNDLVSLADVRQAGATGVVTALHHIPNGEVWSVEE
                     ILKRKAIVEDAGLVWSVVESVPIHEDIKTHTGNYEQWIANYQQTLRNLAQCGIRTVCY
                     NFMPVLDWTRTDLEYVLPDGSKALRFDQIEFAAFEMHILKRPGAEADYTEEEIAQAAE
                     RFATMSDEDKARLTRNIIAGLPGAEEGYTLDQFRKHLELYKDIDKAKLRENFAVFLKA
                     IIPVAEEVGVRMAVHPDDPPRPILGLPRIVSTIEDMQWMVDTVNSMANGFTMCTGSYG
                     VRADNDLVDMIKQFGPRIYFTHLRSTMREDNPKTFHEAAHLNSDVDMYEVVKAIVEEE
                     HRRKAEGKEDLIPMRPDHGHQMLDDLKKKTNPGYSAIGRLKGLAEVRGVELAIQRAFF
                     SR"
     gene            4134..4338
                     /locus_tag="JN125_003106"
                     /pseudo
     CDS             4134..4338
                     /locus_tag="JN125_003106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003031542.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(4581..5483)
                     /gene="fimH"
                     /locus_tag="JN125_003107"
     CDS             complement(4581..5483)
                     /gene="fimH"
                     /locus_tag="JN125_003107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria D-mannose specific adhesin FimH"
                     /protein_id="HAY8872792.1"
                     /translation="MKRVITLFAVLLMGWSVNAWSFACKTANGTAIPIGGGSANVYVN
                     LAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSS
                     YPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNS
                     DDFQFVWNIYANNDVVVPTGGCDVSARDVTVTLPDYPGSVPIPLTVYCAKSQNLGYYL
                     SGTTADAGNSIFTNIASFSPAQGVGVQLTRNGTIIPANNTVSLGAVGTSAVSLGLTAN
                     YARTGGQVTAGNVQSIIGVTFVYQ"
     gene            complement(5503..6006)
                     /gene="fimG"
                     /locus_tag="JN125_003108"
     CDS             complement(5503..6006)
                     /gene="fimG"
                     /locus_tag="JN125_003108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria minor subunit FimG"
                     /protein_id="HAY8872793.1"
                     /translation="MKWRKRGYLLAAILALASATIQAADVTITVNGKVVAKPCTVSTT
                     NATVDLGDLYSFSLMSAGAASAWHDVALELTNCPVGTSRVTASFSGAADSTGYYKNQG
                     TAQNIQLELQDDSGNTLNTGATKTVQVDDSSQSAHFPLQVRALTVNGGATQGTIQAVI
                     SITYTYS"
     gene            complement(6019..6549)
                     /gene="fimF"
                     /locus_tag="JN125_003109"
     CDS             complement(6019..6549)
                     /gene="fimF"
                     /locus_tag="JN125_003109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709916.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria minor subunit FimF"
                     /protein_id="HAY8872794.1"
                     /translation="MRNKPFYLLCAFLWLAVSRVLAADSTITIRGYVRDNGCSVAAES
                     TNFTVDLMENAAKQFNNIGATTPVVPFRILLSPCGNAVSAVKVGFTGVADSHNANLLA
                     LENTVSAASGLGIQLLNEQQNQIPLNALSSAISWTTLTPGKPNTLNFYARLMATQVPV
                     TAGHINATATFTLEYQ"
     gene            complement(6559..9194)
                     /gene="fimD"
                     /locus_tag="JN125_003110"
                     /pseudo
     CDS             complement(6559..9194)
                     /gene="fimD"
                     /locus_tag="JN125_003110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418737.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial biogenesis usher protein FimD"
     gene            complement(9261..>9773)
                     /gene="fimC"
                     /locus_tag="JN125_003111"
     CDS             complement(9261..>9773)
                     /gene="fimC"
                     /locus_tag="JN125_003111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418736.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria chaperone FimC"
                     /protein_id="HAY8872795.1"
                     /translation="WMENADGVKDGRFIVTPPLFAMKGKKENTLRILDATNNQLPQDR
                     ESLFWMNVKAIPSMDKSKLTENTLQLAIISRIKLYYRPAKLALPPDQAAEKLRFRRSA
                     NSLTLINPTPYYLTVTELNAGTRVLENALVPPMGESTVKLPSDAGSNITYRTINDYGA
                     LTPKMTGVME"
BASE COUNT         2338 a         2581 c         2389 g         2465 t
ORIGIN      
        1 atttacaaag taatactcat tgcgacttct taatttaaga aagcgcaagg aacgtttacc
       61 cttgcgctta tcataatcag tcaggcgtcg actttatcca gcggccatga atcaaacaga
      121 tagccgtcaa aataaatatc gtcaacgttc gagaattcca gcagacgttg cttaacgttt
      181 tccagatgct gccacattgc cagcttcgcc gctcgggcat cttttttgat taacgcggca
      241 aggatctgtt tgtgatcgcc caaccactct ttgcgataca ggctgtcatc cagatggctg
      301 tgcaactgga tccacattgg gttgttttcc cgccactgcc aggactgacg gaataactcc
      361 accagcatgc tgttatgcgt tgcttcagca atggcgagat ggaactgcat gtcaccgctt
      421 tcgctgctac ccggcgcgct ggaagccagt tcacgctctt ccagttgcaa tgcctgacgc
      481 attttgacga tatcttcgcg ggtagcctgc agggcggcaa attccgcgat gttgctctca
      541 agaagctgtc gcgcctgcaa caattcaaag gggccggcat cattgcagac gttggcatcc
      601 ggactgtctg tgttgtggct gcctgagcta tcaagaacat agataccggc accccggcgc
      661 acttccacca gccctttgat ctccagcatg atcagcgctt cacgtaccac cgtccgcgtg
      721 acatcaagca tttctgcaat ttcacgctcc ggcggcagcc gttcgccagg attgtacggc
      781 gtctttatga tcagatcgcg gatcatcgcc ccgacttcct ggtaaggtct ttgcgcagag
      841 gtggcagatt tcatggtgtt gtgtccgtta ggtgcggtta atcaaatttt tgccggatgc
      901 ggcgtgaacg ccttatccgg cctacaacgg gcaattttac ggcccccgtt aatctcaaac
      961 tataccatta gcactggaag ttggcacgta caggtgggca aaaaaacgaa aactggtcaa
     1021 ccaaatatca gtttgattga ccagtaagtc tgtagggtaa tcagttagtt acagcgcagc
     1081 cacacactcg cgcgcaccgc gttcgcacag ctgctgatat gccgccgtca ccgcgccaac
     1141 aaagtcggca ttctgcggca gatcatcggc aaaaataccg ctcaggccca gcagcgcttt
     1201 cacgcggtct gcgccctgat actgcgcgtt aatcttctgg aactcggcca gcatcgggtc
     1261 gaccacgtca atggcattac cctgctcatc cacgccctgg gtgtaacgca tccagccagc
     1321 cacgcccagc gccaggtgac gccagctgcc gccgttttgc aggtgcagac gcaccgggtc
     1381 cagcagacgc tgcggtaact tctggctgcc gtccatcgca atctgccagg tacggtgacg
     1441 cagagacggg ttgctgaaac gctcgatcag cagcgtcgca taggccttca ggtccgtacc
     1501 ctccggcata gacagcgttg gcgcttgttc ctgcatcatc agggcaaagg ccgctttgcg
     1561 ataatccggg ttagtcatgg tgtcggcaat agtttcatag ccgccgaggt aaccgaggta
     1621 tgccaggaaa gagtggctgc cgttcagcat acgcagcttc atcatttcga acggcacaac
     1681 gtctgcaacg aactgtgcgc ccactttatc ccagtccggg cgaccattaa cgaagttatc
     1741 ttcaatcacc cactgacgga acggttcgca ggcaatggcg cacgggtcgt aaacacccag
     1801 ctgatcagca atttcctgta aggtttctgg cgtcgccgcc ggaacgatgc ggtcaaccat
     1861 ggtgcacggg aaggtgacgt tctcttcaat ccatgccgcc agctgcgggt cacgtgcctg
     1921 agccagcccc agtaccgcga ccttcgccac atgaccgttt tcacgcacgt tatcgcagga
     1981 catcaccgta aatgctttca gccctttttc acgacgcaga cgcaaggctt cgacgatgta
     2041 accaatcgcg gacttcggcg cagtcgggtt ttctagatcg tgcttgatca gcgggttatt
     2101 gagatccagt tgaccgcttg ccgcatcagc gcagtagcct ttttccgtga ccgttagaga
     2161 gacaatcgcc gtttgcggac gcgccatcgc gttgagaata ccttcgcagc cgtcgatttc
     2221 cggatgcagc gcttctttca tcgaaccgat aattttcagc tcggtgcttt ctgcgccttt
     2281 ttccgctacg gtgtacagca gttgctgttt tttcaggttt tcgatcagca cgcggtcgtt
     2341 gcctggcatc aggttaactt cgcagatgcc ccagtcgctg tcggtgcttt ccagcagatg
     2401 atgggtatac agcgcctgat gtgcgcggtg aaacgccccg caaccgagat gcacaatgcg
     2461 tgattccaga cgagaatgat cccatgacgg gcgggcaacc ggcagattgc tgtcaacaat
     2521 agtagtcatc gtaaactcca gaatccgtct tcagagagtg acggcaagga agaaggaacc
     2581 ggcacggcgc gcagccatgc cggtggatat taacggctaa agaaagcgcg ctggatcgcc
     2641 agttcgacac cgcgaacttc ggccaggcct ttcagacgac caattgcgga gtaacctggg
     2701 ttggttttct tcttcaggtc gtccagcatc tgatgaccgt ggtccggacg catcgggatc
     2761 aggtcttctt tgccttccgc tttacgacgg tgttcttctt caacaatcgc tttcaccact
     2821 tcgtacatat caacgtcact gttcaggtgc gccgcttcgt ggaaggtttt cgggttatct
     2881 tcacgcatgg tggagcgcag atgggtgaag taaatacgcg gaccgaactg cttgatcata
     2941 tcaaccagat cgttgtcagc acgcacgccg taggaaccgg tgcacatggt gaaaccgttc
     3001 gccatgctgt ttacggtatc aaccatccac tgcatatctt caatggtgga aacaatgcgc
     3061 ggcaggccga ggatcgggcg cggcggatcg tccgggtgaa ccgccatacg cacgccaact
     3121 tcttcagcaa ctggaataat cgctttcagg aagacggcaa agttttcgcg cagcttcgct
     3181 ttatcgatat ctttgtacag ctccaggtgc ttacggaact ggtcgagggt atacccttct
     3241 tccgcgcccg gcagaccggc aatgatgtta cgcgtcagac gcgctttgtc ttcatcgctc
     3301 atagtggcga agcgttcagc tgcctgagca atttcttctt cggtgtaatc cgcttccgcg
     3361 cctggacgtt tcaggatatg catttcgaat gcagcgaatt cgatctggtc gaagcgcaga
     3421 gctttggagc cgtctggcag cacgtattcg aggtcagtac gggtccagtc gagcaccggc
     3481 atgaagttgt agcacacggt gcgaatgccg cactgcgcca ggttgcgcag agtctgctga
     3541 tagttagcga tccactgctc atagttgcca gtgtgggttt tgatatcttc gtgaattggt
     3601 acgctttcta cgacagacca caccaggcct gcgtcttcaa cgatcgcctt gcgtttgagg
     3661 atctcttcta cggaccatac ttcgccgttc gggatatggt gcagcgcggt aaccacgcca
     3721 gttgcgcccg cctgacggac atcagctaaa gaaaccagat cgtttgggcc gtaccagcgc
     3781 caggtctgtt ccatgatttt tcctctttca catagtgggt tccacagcaa agagacgcgg
     3841 aaccctggag ttgtttaggt atccggatga acaaccagac cgcagccgtg gcgttgcatc
     3901 ggatgagatg gcgtataagt tctagctttt ggtaagatat gtcaagccga attctgaaat
     3961 tggttaacca aattacaaga atttcactct catggttgtt gctgcaaatt gcagcaaaag
     4021 gtaatcgatg gttattgatc agaggatgtg acattcatcg caacaatggt tgaccaattt
     4081 acataacatg tcgcccaaaa taacaacggt tcaaccaggt aaggtaaaac gttatgcatg
     4141 tgcttaacat tctctgggta gtattcggca ttggtctgat gctggtactg acaacgaccg
     4201 caggttcaga cacattcact gcattagcaa tgcctcttag attattttga cctgtcagta
     4261 aaagacacgt tgaaaacctg gggtctgctg gagctggtca actccgtggt tgggctgatt
     4321 attagcaagg tagcgtaaaa gaacaccaga gcctgccaat ggcaggctct gactgatgac
     4381 aaagtctaaa aatgtgcccg gacagtcccc tcgcccctcc ggggagaggg ttagggtgag
     4441 gggaacagac cagcaaagtg cgctttgttt atgccagatg cgacgctgac gcgtcttatc
     4501 tggcctacaa agggctaacg tgcaggtttt tagcttcagg taatattgcg taactgcatt
     4561 agcaatgccc tgtgatttct ttattgataa acaaaagtca cgccaataat cgattgcaca
     4621 ttccctgcag tcacctgccc tccggtacgt gcgtaatttg ccgttaatcc cagacttacc
     4681 gccgaagttc ctactgctcc taacgatacc gtgttattcg ctggaataat cgtaccgttg
     4741 cgcgtcaact gtacgccgac gccctgtgct ggtgaaaacg acgcgatatt ggtgaaaatc
     4801 gagttgcccg catctgcggt tgtgccggag aggtaatacc ccaggttttg gcttttcgca
     4861 caataaacgg taagaggaat tggcactgaa ccagggtagt ccggcagagt aacggtgaca
     4921 tcacgagcag aaacatcgca gccgccagta ggcaccacca catcattatt ggcgtaaata
     4981 ttccacacaa actggaaatc atcgctgtta tagttgttgg tctgtcgcaa aataagcacg
     5041 gcaattaatg agccagcttt aatcgccacc ccgcccgcac tgctcacagg cgtcaaataa
     5101 agcgccaccg gccacggctt atccgttctc gaattataaa caacccgcgg cgtttcgctg
     5161 gtggtcggaa atggatagct actgccacta tattttacgg tcccggaaaa attagataac
     5221 acgccgccat aagccgagcc tcgttgcagt gtgacatagt ctgtaatggt ttccggataa
     5281 tcgttatggc aaaagatttg cgtcgaaaga tctacgacca ggttttgccc cacattcacg
     5341 acaggcgcaa ggtttacata aacattagcg ctgccaccgc caatagggat agcagtacca
     5401 ttggcggttt tacaggcgaa tgaccaggca tttaccgacc agcccatcag cagtacagca
     5461 aacagggtaa taactcgttt cattacaatt atctcttcgg gttcagctgt aggtataggt
     5521 gatgctaatc actgcctgaa tggttccctg agtggctccg ccatttaccg tcaatgctct
     5581 gacctgtaac gggaagtgcg ctgattgtga ggaatcatcc acctgaactg ttttggttgc
     5641 gccagtattc aatgtgttgc cactgtcatc ctgtagctct aactggatgt tttgcgcggt
     5701 cccctggttt ttataatatc cggtactgtc ggctgccccg ctgaagctgg cagtgaccct
     5761 cgacgttccc accggacaat tagtcaactc aagcgcaaca tcatgccagg ccgatgccgc
     5821 cccggcagac atcagactga aagaataaag atcgccgaga tcaaccgtgg cattggtggt
     5881 ggaaactgtg cacggtttgg cgacgacctt accgttcacc gtgatggtga catcggctgc
     5941 ctgtattgtc gcacttgcga gcgccaatat tgccgccaat aaatacccac gtttgcgcca
     6001 tttcatgagc atctccagtt actgatattc aagagtgaag gtagccgtgg cattgatatg
     6061 ccccgcagtg acaggcacct gtgtcgccat tagccgggcg taaaaattca acgtatttgg
     6121 tttacccggc gtcagggtcg tccacgaaat cgcggacgat agagcattaa ggggtatctg
     6181 attttgctgc tcattcagaa gctgtattcc cagtcccgaa gccgcagaca ccgtattttc
     6241 aagtgcaagc aggttggcat tgtggctatc tgcaacgccg gtaaacccaa cctttacggc
     6301 agaaacggcg ttaccacagg gtgacagcaa aatacgaaat ggaacgacag gagtcgttgc
     6361 accaatgttg ttaaattgct tcgccgcgtt ttccatcaga tcaacagtaa aattggttga
     6421 ttcagcggcc acactacagc cgttatctct gacatagccg cggatagtaa tcgtgctatc
     6481 cgcagccaaa acgcgactta ccgccagcca caaaaaagcg cacagaagat aaaaaggttt
     6541 gtttctcatc acgccccctt aacgacattc agctgatagc tgggttaata actgctgctg
     6601 actctctggt ggcagttgat aattggcgat acagtgagca ttttcctctt ctccccattt
     6661 cacctgaact tttcccgcta aaggcattcc gctgaggtaa acctgaccat tatccgcaac
     6721 aatgccgcta ctctggctac tctctgatgt caccatcgcc ccaaacggca gcggcttatt
     6781 attgtgggtt agcgtcatga gcagttttat cccaacgcgc gctttaaact ctgctcgcac
     6841 gatcgcccca cgagtgggaa caacgttagc gaccgcgtta tctaaatcga cgttatcagc
     6901 cagggtattg gtatccagcg ccactctgtt ttcccgatat tcggtggcat aaggcagcac
     6961 ggcataaccg cgccagtcgg tacgcacccc cgtctggttt tcgacttttg catcttttgc
     7021 gccaggcgct ttaacaagta ccaccgtatc gtttaacggc tgccccagcg ttacgccatt
     7081 ggcatgagcc agtaccccac cgctgactcc gtaatagagc tgcttaatat catcgctatg
     7141 gctgtaaccg atattggcat tgccgtaacc accgcgataa ttcagcgtgg cgtagcctgt
     7201 acttccgcta ttaccatcgc ctcccccggc atagccggtt tgcacgctat agctgaggtt
     7261 gttgtcttcc agcaacgtac cgtatacacc agccagattg gtcatccgac cgttgagatc
     7321 gtgtgacatg ctgtagctgg cactggcatg tcgccactga gatttactgt cagaacgcag
     7381 ccagtggctg aaaggaatat tgacgttaag cgctaacatc tgatcccgtc ctttttgccc
     7441 ggcgtttttc gtcaggctat agctgagcgt ccagttgata tcttcgaacg cagtatttaa
     7501 tccagcctag aattgctcat cgacattact cgttccccaa taagtttgat ggctaccact
     7561 caaatacagt gttgatgtgc gcccgagttg ctgagtaacg gtgagctgta atttcccgcg
     7621 tttgttataa gcgaggttgt aatagtcggt gaatttcggc ttaacctgaa taactccatc
     7681 ctgtgtttcg atgttgtagc cattcattcg actgtatgtt gtatcagcga aattaaaata
     7741 tccgctggtc gaataacggt aacccactaa ctgaatattc gtgcctgact cattgagcga
     7801 tttgttatag agaaaacgca ccgattgtcc gtcatgctga ctgtcatcgg gaagtgtgga
     7861 attagcctgc gtcatatcca cagacagagc gcccagtgcc cccatgtttt tcccgatacc
     7921 gaaattaaaa gcacgataac gatccgccag ttgcgttcca ccatatattg tccagccagc
     7981 cggaaggccg tggagtaatg tactttggaa aaagcggggt ttttcctgct gcgtatttcc
     8041 actacggtat tctcctgccg taatggaata acgagtatgc ccttcacgtt gcaaaagcgg
     8101 gactgacgaa tagggtacgg taaaaatctg cgtgctgccg tcagcctctt tgatcgttac
     8161 ctgcaagtca ccactattac ctgcggcata gatatcgttg atggtaaaag gccccggtgg
     8221 caccgtacta ttataaatgt catacccatt ttgtttaata gtgacctgtg cagtaccacg
     8281 agcaataccg tggatcaccg gggcaaatcc tctttggcta tcgggtaaca tattgtcatc
     8341 tgaggccaat tgtgcgccgc gaaagttaat accatcgaaa atatcgccct gggtataacc
     8401 atcacccagc gtcagccggg aacgtaacgg tattatgtct cgctcaagcc aggtattgat
     8461 atgctgccat ttatttttgc tacctgatga tctgtcgcta ctgttataac tccagctggt
     8521 attgtcgcgt aaacaccacg caccaatatt taacccactc tgtaggttta aatatgcata
     8581 atggctgtta ccccaaatcc gattctgtac actatttccg ctgaaattat aattgagcaa
     8641 tccggcatta ataccgggat cccataactc aggaggaata taaccacgcg cgcgattact
     8701 cataaatgcc tgagggatcg tcaggttcag tcgctgctga ccaacatcca gatgcgcagt
     8761 agcgtcatgg atcattgagg ttaatggcac gcaggcatca tctgccagca gattcatacc
     8821 ggagacagaa gccgcattca gccccatact ggcaagttgc gcgcgtgtca ggcagggaac
     8881 aatcccttgt tcactgtcgc ccgtattaaa tgtgacatca cgcgttgcca tataaccatt
     8941 attcaaatag atatcgacgc gatacgtccc tggcggtaat tcttgcccat tttcaaaacg
     9001 cgataaatcg gccacagcct ggggatcatc cgctaaaaag cgcggattaa aatagagttc
     9061 ggcagatgac aaaggtgcct gtgcggcaaa agcacaggcg acaacgagcc ggacaaaaaa
     9121 ccagccaaac gatgcttacg aatatgcaag cattgtgtgt ttcgctggta aagtcttaaa
     9181 ttcagatatg acattattcc tccggtttaa aattacccgg cagtcaattc tttttattca
     9241 ggcgagaaat tccccctgcg ttattccatt acgcccgtca ttttgggggt aagtgcgcca
     9301 taatcattta ttgttcggta agtaatattg cttcctgcat cagaaggcaa tttaaccgtg
     9361 ctttcgccca ttggaggcac caatgcattt tcaagaaccc gggttccggc attcaactct
     9421 gttaccgtca gataataggg tgtcgggtta atcagcgtca gagaattcgc gctacgacga
     9481 aatcttaatt tttctgcggc ctgatcgggt ggcaacgcta atttagccgg gcgatagtac
     9541 agtttaatgc ggctgataat tgcgagctgt agcgtattct cagtcaattt tgatttatcc
     9601 attgacggaa tcgctttaac attcatccag aataaacttt cccggtcctg tggcaattgg
     9661 ttatttgttg catcaagaat acgcaaggta ttctcttttt ttcccttcat cgcaaacaga
     9721 ggaggcgtca cgataaaacg accatccttt acaccatcgg cattttccat cca
//
LOCUS       DADMHM010000150         9608 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.153, whole genome shotgun sequence.
ACCESSION   DADMHM010000150 DADMHM010000000
VERSION     DADMHM010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9608)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9608)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9608
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.153"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            121..987
                     /gene="folD"
                     /locus_tag="JN125_003112"
     CDS             121..987
                     /gene="folD"
                     /locus_tag="JN125_003112"
                     /EC_number="1.5.1.5"
                     /EC_number="3.5.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HAY8872796.1"
                     /translation="MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSN
                     PASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDALNADNTIDGILVQLPLP
                     AGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGL
                     NAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPG
                     DWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTL
                     QACVEYHDPQGE"
     gene            989..1201
                     /gene="ybcJ"
                     /locus_tag="JN125_003113"
     CDS             989..1201
                     /gene="ybcJ"
                     /locus_tag="JN125_003113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308617.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated protein YbcJ"
                     /protein_id="HAY8872797.1"
                     /translation="MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEGQVKVDGA
                     VETRKRCKIVAGQTVSFAGHSVQVVA"
     gene            1309..1830
                     /locus_tag="JN125_003114"
     CDS             1309..1830
                     /locus_tag="JN125_003114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HAY8872798.1"
                     /translation="MPTVITHAAVPLCIGLGLGSKVIPPRLLFAGIILAMLPDADVLS
                     FKFGVAYGNVFGHRGFTHSLVFAFVVPLLCVLIGRRWFRAGLIRCWLFLTVSLLSHSL
                     LDSVTTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTPYGHQVIISELMWVWLP
                     GMVLMGMLWWRRR"
     gene            complement(1866..3251)
                     /gene="cysS"
                     /locus_tag="JN125_003115"
     CDS             complement(1866..3251)
                     /gene="cysS"
                     /locus_tag="JN125_003115"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005125243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HAY8872799.1"
                     /translation="MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTF
                     VAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDA
                     LNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDL
                     DQLQAGARVDVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLG
                     NHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFT
                     VRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQTRAALERLYTALRGTDKTVAPAG
                     GEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLG
                     LLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLE
                     DGPQGTTWRRK"
     gene            3425..3919
                     /gene="ppiB"
                     /locus_tag="JN125_003116"
     CDS             3425..3919
                     /gene="ppiB"
                     /locus_tag="JN125_003116"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017465360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase B"
                     /protein_id="HAY8872800.1"
                     /translation="MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRV
                     INGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINV
                     VDNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESV
                     TVSE"
     gene            3922..4644
                     /gene="lpxH"
                     /locus_tag="JN125_003117"
     CDS             3922..4644
                     /gene="lpxH"
                     /locus_tag="JN125_003117"
                     /EC_number="3.6.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HAY8872801.1"
                     /translation="MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFE
                     AWIGDDDPNPLHRQMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKV
                     LELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQMLFLALPLFVRKRIAARMRANS
                     KEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGA
                     WHTEGSMVKVTADDVELIHFPF"
     gene            4762..5271
                     /gene="purE"
                     /locus_tag="JN125_003118"
     CDS             4762..5271
                     /gene="purE"
                     /locus_tag="JN125_003118"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HAY8872802.1"
                     /translation="MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSA
                     HRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVD
                     SLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNDWRKAQTDEVL
                     ENPDPRGAA"
     gene            5268..6335
                     /gene="purK"
                     /locus_tag="JN125_003119"
     CDS             5268..6335
                     /gene="purK"
                     /locus_tag="JN125_003119"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706400.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HAY8872803.1"
                     /translation="MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQS
                     VITAEIERWPETVLTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAD
                     RSEWPAVFDRLGELAIVKRRTGGYDGRGQWRLRANETEQLPAECYGECIVEQGINFSG
                     EVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELG
                     YVGVMTMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITALPLPQPVV
                     NNPSVMINLIGSDANYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEA
                     LIPLLPPEYASGVIWAQSKFS"
     gene            complement(6472..7365)
                     /locus_tag="JN125_003120"
                     /pseudo
     CDS             complement(6472..7365)
                     /locus_tag="JN125_003120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706399.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
     gene            complement(7362..8177)
                     /locus_tag="JN125_003121"
     CDS             complement(7362..8177)
                     /locus_tag="JN125_003121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2877 domain-containing protein"
                     /protein_id="HAY8872804.1"
                     /translation="MTIIHPLLASSSAPNYRQSWRLAGVWRRAINLMTESGELLTLHR
                     QGSGFGPGGWVLRRAQFDALCGGLCGNERPQVVAQGIRLGRFTVKQPQRYCLLRITPP
                     SHPQPLAAAWMQRAEETGLFGPLAMAASDPLTAELRQFRHCFQAALNGVKTDWLHWLG
                     KGPGLTPSHDDTLSGMLLAAWYYGALDARAGRPFFACSDNLQLVTTAVSVSYLRYAAQ
                     GYFASPLLHFVHALSCPKRTAVAIDSLLALGHTSGADTLLGFWLGQQLLQEKP"
     gene            complement(8188..9447)
                     /locus_tag="JN125_003122"
     CDS             complement(8188..9447)
                     /locus_tag="JN125_003122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009029994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1116 domain-containing protein"
                     /protein_id="HAY8872805.1"
                     /translation="MFTSVAQANAAVIEQIRRARPHWLDVQPAFSLISELNEGKTLLH
                     AGPPMRWQEMTGPMKGACVGACLFEGWAKDEAQALAMLDQGEVNFIPCHHVNAVGPMG
                     GITSASMPMLVVENVTDGNRAYCNLNEGIGKVMRFGAYGEDVLTRHRWMRDVLMPVLS
                     AALGRMERGIDLTAMMAQGITMGDEFHQRNIASSALLMRTLAPQIARLDHDKQHIAEV
                     IDFLSVTDQFFLNLAMAYCKAAMDAGAMIRAGSIVTAMTRNGNMFGIRVSGLGERWFT
                     APVNTPQGLFFTGFSQEQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAAR
                     AVSEEMAEIYLERNMQLQIPGWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQ
                     IGAGTVRAPLACFEQALEALAESMGIG"
     gene            complement(9457..>9608)
                     /locus_tag="JN125_003123"
     CDS             complement(9457..>9608)
                     /locus_tag="JN125_003123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="protein fdrA domain protein"
                     /protein_id="HAY8872806.1"
                     /translation="LLENVAVINIGLRSFALELQSASKPVVHYQWSPVAGGNKKLARL
                     LERLQ"
BASE COUNT         2114 a         2731 c         2562 g         2201 t
ORIGIN      
        1 aaccttcgca agaggtcgct tcacgcgata aatctgaaac gaaacctgac agcgcgcccc
       61 gcttctgaca aaataggcgc atccccttcg acctacgtaa cagatggaat cctctctctg
      121 atggcagcaa agattattga cggtaaaacg attgcgcagc aggtgcgctc tgaagttgct
      181 caaaaagttc aggcgcgtat tgcagccgga ctgcgggcac caggactggc cgttgtgctg
      241 gtgggtagta accctgcatc gcaaatttat gtcgcaagca aacgcaaggc ttgtgaagaa
      301 gtcgggttcg tctcccgctc ttatgacctc ccggaaacca ccagcgaagc ggagctgttg
      361 gagcttatcg atgcgctgaa tgccgacaac accatcgatg gcattctggt tcaactgccg
      421 ttaccggcgg gtattgataa cgtcaaagtg ctggaacgta ttcatccgga caaagacgtg
      481 gacggtttcc atccttataa cgtcggtcgt ctgtgccagc gcgcgccgcg tctgcgtccc
      541 tgcaccccgc gcggtatcgt cacgctgctt gagcgttaca acattgatac cttcggcctc
      601 aacgccgtgg tgattggcgc atcgaatatc gtcggtcgtc caatgagcat ggaactgttg
      661 ctcgcaggtt gcaccactac cgtgactcac cgtttcacta aaaatctgcg tcaccacgta
      721 gaaaatgccg atctgttgat cgttgccgtc ggcaagccgg gctttattcc tggtgactgg
      781 atcaaagaag gcgcaattgt gattgatgtc ggcatcaacc gtctggaaaa tggcaaagtt
      841 gtgggcgacg tcgtgtttga agacgcggct aaacgcgcct catacattac gcctgttccg
      901 ggcggcgttg gcccgatgac ggttgccacg ctgattgaaa acacgcttca ggcgtgcgtt
      961 gaatatcatg atccacaggg tgagtaacat ggcgacattt tctttaggta aacacccgca
     1021 cgttgagctg tgcgatttgc tgaaactgga aggctggagc gaaagcggcg cgcaggcgaa
     1081 aatcgcgatt gccgaaggcc aggtgaaagt cgacggtgcg gttgaaacgc gcaaacgctg
     1141 caaaatcgtc gccggtcaga cagtgagttt tgcaggtcac agcgtacagg ttgttgcctg
     1201 atccctttcc cggcctgtat caacaggccg gttctctttt cagacttttg ccctctacgc
     1261 cccgttcatc catgctgata gcatcgacat tttgccgaag cgaccatcat gccaaccgtt
     1321 attacgcacg ccgccgttcc cctatgcatt ggtttagggt tgggttcgaa agtcatccct
     1381 ccgcgtctgt tatttgccgg aatcatcctg gcgatgctgc ccgacgccga cgtattgtcg
     1441 tttaaatttg gcgttgctta cggcaatgtt tttggtcatc gcgggtttac ccattcgctg
     1501 gtgtttgcgt ttgttgtccc gctgttatgt gtgctgattg gacgccgatg gttcagggct
     1561 gggctgattc gctgctggct gtttttaacc gtctcgttgc tatcgcacag cttgctggat
     1621 tcggtaacca ctggcggtaa gggcgttggc tggctgtggc cgtggtcaga tgaacgcttt
     1681 ttcgctccct ggcaggtgat taaagtcgcg ccgtttgcat tgtctcgtta caccacgccg
     1741 tacgggcatc aggtgataat ttctgaattg atgtgggtgt ggttgccggg gatggtgctt
     1801 atgggaatgt tgtggtggcg caggcgataa ccggatgcga aaactcgcat ccggcaacag
     1861 cgcaattact tacgacgcca ggtggtccct tgcgggccat cttccagcac gatccccatc
     1921 tcgttaagac ggtcacgcgc cgcatctgcc gccgcccagt ctttcgcttt acgggcatcc
     1981 agacgctgtt gaattaacgc ttcaatctca gccacttcgc tgtcgtctgc ctgcgcgccg
     2041 ctttgcagga acgcttccgg ttcttgctcc agcaggccca atacagcgga aagtttacgc
     2101 aggtgagatg ccattgcatt cgccgctgcc atatcttctg ctttcagacg gtttacttca
     2161 cgcgccatat caaacagtac ggaataggct tccggggtgt tgaaatcgtc gtccatcgct
     2221 tcaataaagc gcgcttcaaa cgcttcgcca ccggcaggcg caacggtttt atctgtgccg
     2281 cgcagcgcag tgtagagacg ctccagcgcc gcacgcgtct gcttcaggtt ctcttcgctg
     2341 tagttcaact ggctgcgata gtggcccgac atcaggaagt aacgcacggt ttccgcgtcg
     2401 tagtatttca gcacatcgcg cacggtaaag aagttaccca gcgatttgga catcttctcg
     2461 cggtcaacca tcaccattcc ggagtgcatc cagtagttca catactgacc atcatgggca
     2521 caggtggact gcgcgatttc gttctcgtgg tgcgggaaca tcaggtctga accgccgccg
     2581 tggatatcaa agtggttacc cagctgcttg cagttcatgg ccgaacattc aatgtgccag
     2641 ccaggacgac ccgcgcccca cggagacggc cagctcggtt cgccctcttt cgacatcttc
     2701 cacagaacga agtccatcgg gttgcgtttg tcatcaacca cgtcaacgcg cgcgccagcc
     2761 tgcagctggt cgagatcctg acgcgacagc acgccataag tcggatcggt cgggacgtcg
     2821 aacatcacgt cgccgttgtc agccacataa gcgtgacctt tggcgatcag ttgttcagtg
     2881 agttcaataa tttctgcgat atggtgcgtc gcgcgcggct ccatatccgg gcgcagaatg
     2941 ttcaaagcat caaaatcttt gtgcatttcg gcgatcatgc gatccaccag cgccacaaag
     3001 ctttcgccat tttcattggc gcgtttgatg attttgtcgt cgatatcggt aatgttgcgc
     3061 acatacttca gcttatagcc gaggaaacgc agatagcgcg caaccacgtc aaaagcaaca
     3121 aaggtacgcc cgtgaccgat atgacagaga tcgtaaacgg tgattccaca cacgtacatg
     3181 ccgacttccc cggcgtgaat aggcttaaat tcctcttttt ggcgtgtcag agtattgaag
     3241 atttttagca tcgaagattc cgtttagaca tgtgtgggta attgagttgc gtataatacc
     3301 catatttccc gcgcgaatca gcatacattg cgtgatgatc cgatcgtgcg gttatgctat
     3361 aacaccaccc tatatatgac ccgaaccggg ttgaagcacc aatcaaacgg aacaggatgc
     3421 aaaaatggtt actttccaca ccaatcacgg cgatattgtc atcaaaactt ttgacgataa
     3481 agcacctgaa acagttaaaa acttcctgga ctactgccgc gaaggttttt acaacaacac
     3541 cattttccac cgtgttatca acggctttat gattcagggc ggcggttttg aaccgggcat
     3601 gaaacaaaaa gccaccaaag aaccgatcaa aaacgaagcc aacaacggtc tgaaaaatac
     3661 ccgtggtacg ctggcaatgg cccgtactca ggctccgcac tctgcaactg cacagttctt
     3721 catcaacgtg gttgataacg acttcctgaa cttctctggc gaaagcctgc aaggttgggg
     3781 ctactgcgtg tttgctgaag tggttgaagg catggacgtg gtagacaaaa tcaaaggtgt
     3841 tgcaaccggt cgtagcggta tgcaccagga cgtgccaaaa gaagacgtta tcattgaaag
     3901 cgtgaccgtt agcgagtaat cgtggcgaca ctctttattg cagatcttca tctctgcgtg
     3961 gaagaaccgg cgatcaccgc cggttttctg cgttttttag cgggggaagc tcgcaaggcc
     4021 gacgcgctgt atattcttgg cgatctgttt gaagcgtgga ttggcgacga cgatcccaat
     4081 ccactccatc gccagatggc ggcagcgatc aaagcggtgt ccgattccgg cgttccctgt
     4141 tatttcattc atggcaaccg tgattttctg ctcggcaaac gctttgcccg tgaaagtggc
     4201 atgacgttat tgccggaaga aaaggtgctc gaactttatg gccgccgggt gttgattatg
     4261 catggcgaca cgctgtgcac cgatgacgcg ggttatcagg cttttcgcgc caaagtccac
     4321 aaaccctggc tgcaaatgct attcctcgcc ctgccgttgt ttgtgcgcaa acgcattgcc
     4381 gcgcgaatgc gcgcgaacag caaagaagcc aacagcagta aatcgctggc gatcatggac
     4441 gttaaccaaa acgcagtggt cagtgcgatg gaaaaacatc aggtgcaatg gctgatccac
     4501 gggcataccc atcgcccggc ggtgcatgaa cttatcgcca accagcaacc tgcttttcgc
     4561 gtggtactgg gtgcctggca tacggaaggt tcgatggtga aagtcacggc ggatgacgtt
     4621 gagctgattc attttccgtt ttaaaaaaac cacaactttg ctgatttcac agccacgcaa
     4681 ccgttttcct tgctctcttt ccgtgctatt ctctgtgccc tctaaagccg agagttgtgc
     4741 accacaggag ttttaagacg catgtcttcc cgcaataatc cggcgcgtgt cgccatcgtg
     4801 atggggtcca aaagcgactg ggctaccatg cagttcgccg ccgaaatctt cgaaatcctg
     4861 aatgtcccgc accacgttga agtggtttct gctcaccgca cccccgataa actgttcagc
     4921 ttcgccgaaa gcgccgaaga gaacggttat caggtgatta ttgcgggcgc aggtggcgca
     4981 gcgcacctgc caggcatgat tgccgccaaa acgctggtgc cggtgctggg cgtgccagta
     5041 cagagcgccg cactgagcgg tgtcgatagc ctctactcca tcgtacaaat gccgcgcggc
     5101 attccggtgg gtacgctggc gattggtaaa gctggcgcgg caaacgcggc attactggca
     5161 gcacaaattc tcgcgactca cgataaagag ctacaccagc gtctgaatga ctggcgcaaa
     5221 gcccagaccg acgaagtgct ggaaaacccg gacccgcgag gtgcggcatg aaacaggttt
     5281 gcgtcctcgg taacgggcag ttaggccgta tgctgcgtca ggcaggcgaa ccgttaggca
     5341 ttgctgtctg gccggtcggg ctggacgctg aaccggcggc ggtgcctttt caacaaagcg
     5401 tgattaccgc tgagatcgaa cgctggccgg aaaccgtatt aacccgcgag ctggcgcgtc
     5461 atccggcctt tgtgaaccgc gatgtgttcc cgattattgc tgaccgtctg actcagaagc
     5521 agcttttcga taagctccac ctgccgaccg cgccgtggca gttacttgcc gatcgcagcg
     5581 agtggcctgc ggtgtttgat cgtttaggtg aactggcgat tgttaagcgt cgcactggtg
     5641 gctatgacgg tcgcggtcaa tggcgtttac gcgccaatga aaccgaacag ttaccggcag
     5701 agtgttacgg cgaatgtatt gtcgagcagg gcattaactt ctctggtgaa gtgtcgctgg
     5761 ttggcgcgcg cggctttgat ggcagcaccg tgttttatcc gctgacgcat aacctgcatc
     5821 aggacggtat tttgcgcacc agcgtcgctt ttccgcaggc caacgcacag cagcaggcgc
     5881 aagccgaaga gatgctgtcg gcgattatgc aggagctggg ctatgtgggc gtgatgacga
     5941 tggagtgttt tgtcaccccg caaggtctgc tgatcaacga actggctccg cgtgtgcata
     6001 acagcggtca ctggacacaa aacggtgcca gcatcagcca gtttgagctg catctgcggg
     6061 cgattaccgc tctgccgtta ccgcaaccag tagtgaataa tccgtcggtg atgatcaatc
     6121 tgattggtag cgatgcgaat tatgactggc tgaaattgcc gctggtgcat ctgcactggt
     6181 acgacaaaga agtccgtccg gggcgtaaag tggggcatct gaatttgacc gacagcgaca
     6241 catcgcgtct gactgcgacg ctggaagcct taatcccgct gctgccgcca gagtatgcca
     6301 gcggcgtgat ttgggcgcag agtaagttca gttaagcagg tgctcatttg attgccggat
     6361 gcggcgtaaa cgccttatcc ggcttaccgc tccggtaccc attgtaggcc tgataagacg
     6421 cgtcaagcgt cgcatcaggc atggtgcacc gattgccgga tgctctcatc actacagcga
     6481 aatacaggtc cccgcttcgc ccgccagcgt ctcttcaatt cgcgataacg ccccaatcca
     6541 cgcgggttta ctacggcttc tgacataacc actcaccgcc gttaccttcg gccccatcga
     6601 accatcggct ttggcaaatg gcgctaactc atccggtgtg gcatggcgaa tggcacgttg
     6661 ctgcggcgtt cctcagtttt catataccgc atcagcatcg gtgaggatca ccagtccatc
     6721 ggcattaatc tgctcggcga gcaacgtagt ggcgagatct ttatcaatca ccgcttcact
     6781 ccctgcccca tcttccgtca caggcacacc gccgccgcca ctgcaaatca ccacatgccc
     6841 ctctttgagc aacaactcga tggcttcgct gtcgagaatt ttacgcggtt gcggagacgc
     6901 caccacccgg cgcaaatatt taccatcacg tttcatctgc cagccgtaag ccgcttccag
     6961 tgcctcttgt tcttctggct gataaaccgg accaataaat ttctctggct gcaaaaacgc
     7021 cggatcatca ggcgaaacct caatgcgcgt cagcaccgtc gtaacaggcg gtatctgcgg
     7081 ctgtgcgctc aagctctgcg ccagcatata gccaatcatc ccctggcttt ccgccaccag
     7141 cacatccagc ggatacggtt ctacctcttt ccacgccaga ttctgtaacg ccagcagccc
     7201 cacctgcggc ccgttgccgt gaacaatcgc cagccgataa gaacgggcca ggcgtgccag
     7261 cgcgggtaca gcactggcga tattgcgata ttgattttcc gccgtcagcg cctcaccgcg
     7321 ctggagtaag gcgttgcccc caagagctac aaccagtgtt ttcatggttt ttcttgtaat
     7381 aattgttggc caagccagaa ccccagcagc gtatctgccc ctgacgtatg ccccagcgcc
     7441 agcagcgaat caatcgcaac agcggtacgt ttcgggcaac tcagagcatg gacaaagtgc
     7501 aggagtggcg aggcgaaata tccttgcgcg gcataacgta aataactgac gctcaccgct
     7561 gtggtaacga gttgaagatt gtcggaacag gcaaaaaacg ggcgaccggc gcgcgcatct
     7621 aaagcgccat aataccaagc cgccagcagc attccgctca acgtgtcatc atgacttggc
     7681 gttaatccgg ggcctttacc cagccagtgc agccagtcgg tcttaacgcc attgagcgcg
     7741 gcctgaaaac agtgacgaaa ctggcgtaat tcagcggtca gcggatcgct tgccgccatc
     7801 gccagtggtc cgaaaagtcc ggtttcctcc gcgcgttgca tccatgcagc tgcaagcggt
     7861 tgaggatgcg aaggcggcgt aatacgcagc aaacaataac gctgtggctg tttaaccgtg
     7921 aaacgcccga ggcgaatccc ttgagccaca acctgtggtc gttcattgcc gcataatcca
     7981 ccgcataacg catcgaattg cgcgcggcga agcacccatc ctccggggcc gaaaccacta
     8041 ccctgacgat gcagcgttaa cagttcgccg ctttccgtca tcaggttaat cgcccgccgc
     8101 cacactcccg ctaaccgcca ggactggcga taattcggtg cgctactgct ggcaagcaga
     8161 ggatggatga tcgtcattgc gcgttcctca accaatcccc atgctttcag ccagtgcttc
     8221 cagcgcctgt tcaaagcacg ccagcggtgc ccgcacggtg cctgcgccaa tctgcccgat
     8281 ccccgcctct ttatgggcga taccggtatt gatgagtggc gtaatgccgg tttctaccac
     8341 gcgacgaata tccagcccca ggcacgcgcc ctgaaaatcc cagcctggga tctgcaactg
     8401 catattgcgt tcaaggtaaa tttccgccat ctcttcagat accgccctgg ccgcttccat
     8461 gccacccgca ccgacaaagc gcgttacgcc aggcgctgcg atcattgccg cacctccgat
     8521 accaaaggtt tcggtaatcg cgctatcgcc catatccggg ttcgcctgct cctgcgagaa
     8581 gccggtgaaa aacagacctt gcggagtgtt tacaggcgca gtaaaccagc gttcacccag
     8641 cccgcttacc cgaatcccga acatattgcc gttgcgggtc atagccgtaa cgatgctgcc
     8701 tgcgcggatc atcgcgccag catccatcgc cgccttgcag taggccatcg cgaggttgag
     8761 gaagaactga tcggtcacgc tgaggaaatc gatcacttcc gcaatgtgct gtttatcatg
     8821 atcgaggcga gcaatttgtg gggccagcgt acgcattaac agtgctgagg aagcaatatt
     8881 gcgttgatgg aactcatcgc ccatcgtaat gccctgcgcc atcatcgccg tgagatcgat
     8941 accgcgctcc atgcgcccca gcgccgcgct taatactggc attaacacat cgcgcatcca
     9001 gcgatggcga gtcaggacat cttcgccgta agcgccaaaa cgcatcactt tgccgatacc
     9061 ttcgttgagg ttgcagtacg cccggttgcc gtcggtcacg ttctcgacca ccagcattgg
     9121 catactggca gaagtaatgc cgcccattgg cccgacggca ttcacatggt gacaaggaat
     9181 gaagttcact tccccctggt ccagcatcgc cagtgcctgc gcttcatctt tcgcccagcc
     9241 ttcgaacaga catgcgccca cgcacgcccc tttcatgggt ccggtcatct cctgccagcg
     9301 cattggcggc ccggcgtgaa gcagtgtttt gccctcgttt agttcgctga taagtgaaaa
     9361 agccggttgc acatccagcc agtgtggacg agcacgacga atttgttcga taaccgcagc
     9421 attggcttgc gccactgatg taaacatggg aaccccttat tgcaaacgtt ctaataaacg
     9481 agccagtttt ttattgccgc cggcgactgg cgaccattgg taatgcacaa ccggtttgct
     9541 ggcgctttgt agctccagcg caaagctgcg taatccgatg ttaatcacgg cgacgttttc
     9601 cagtaatg
//
LOCUS       DADMHM010000151         9564 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.154, whole genome shotgun sequence.
ACCESSION   DADMHM010000151 DADMHM010000000
VERSION     DADMHM010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9564)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9564)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9564
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.154"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..248)
                     /locus_tag="JN125_003124"
     CDS             complement(<1..248)
                     /locus_tag="JN125_003124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_460080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate permease"
                     /protein_id="HAY8872807.1"
                     /translation="MSDTSPAIPESIDPANQHKALTAGQQAVIKKLFRRLIVFLFVLF
                     IFSFLDRINIGFAGLTMGRDLGLSATMFGLATTLFYAA"
     gene            complement(423..1211)
                     /gene="hpaI"
                     /locus_tag="JN125_003125"
     CDS             complement(423..1211)
                     /gene="hpaI"
                     /locus_tag="JN125_003125"
                     /EC_number="4.1.2.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-2-oxoheptanedioate aldolase"
                     /protein_id="HAY8872808.1"
                     /translation="MENSFKAALKAGRPQIGLWLGLSSSYSAELLAGAGFDWLLIDGE
                     HAPNNVQTVLTQLQAIAPYPNQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAR
                     EAVRATRYPPAGIRGVGSALARASRWNRIPDYLQKANDQMCVLVQIETREAMKNLPQI
                     LDVEGVDGVFIGPADLSADMGYAGNPQHPEVQAAIEQAIVQIRESGKAPGILIANEQL
                     AKRYLELGALFVAVGVDTTLLARAAEALAARFGAQATAVKPGVY"
     gene            complement(1222..2025)
                     /gene="hpaH"
                     /locus_tag="JN125_003126"
     CDS             complement(1222..2025)
                     /gene="hpaH"
                     /locus_tag="JN125_003126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710089.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo-hepta-3-ene-1,7-dioic acid hydratase"
                     /protein_id="HAY8872809.1"
                     /translation="MFDKHTHTLIAQRLDQAEKQREQIRAISLDYPEITIEDAYAVQR
                     EWVRLKIAEGRTLKGHKIGLTSKAMQASSQISEPDYGALLDDMFFHDGSDIPTDRFIV
                     PRIEVELAFVLAKPLRGPNCTLFDVYNATDYVIPALELIDARCHNIDPETQRPRKVFD
                     TISDNAANAGVILGGRPIKPDELDLRWISALMYRNGVIEETGVAAGVLNHPANGVAWL
                     ANKLAPYDVQLEAGQIILGGSFTRPVPARKGDTFHVDYGNMGSISCRFV"
     gene            complement(2136..2516)
                     /locus_tag="JN125_003127"
     CDS             complement(2136..2516)
                     /locus_tag="JN125_003127"
                     /EC_number="5.3.3.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-carboxymethyl-2-hydroxymuconate
                     Delta-isomerase"
                     /protein_id="HAY8872810.1"
                     /translation="MPHFIVECSDNIREEADLPGLFAKVNPTLAATGIFPLAGIRSRV
                     HWVDTWQMADGQRDYAFVHMTLKIGAGRSLESRQQAGEMLFELIKTHFAALMESRLLA
                     LSFEIEELHPTLNFKQNNVHALFK"
     gene            complement(2526..3377)
                     /gene="hpaD"
                     /locus_tag="JN125_003128"
     CDS             complement(2526..3377)
                     /gene="hpaD"
                     /locus_tag="JN125_003128"
                     /EC_number="1.13.11.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxyphenylacetate 2,3-dioxygenase"
                     /protein_id="HAY8872811.1"
                     /translation="MGKLALAAKITHVPSMYLSELPGKNHGCRQGAIDGHKEISKRCR
                     EMGVDTIIVFDTHWLVNSAYHINCADHFEGVYTSNELPHFIRDMTYNYEGNPELGQLI
                     ADEALKLGVRAKAHNIPSLKLEYGTLVPMRYMNEDKHFKVVSISAFCTVHDFADSRKL
                     GEAILKAIEQYDGTVPVLASGSLSHRFIDDQRAEEGMNSYTREFDRQMDERVVKLWRE
                     GQFKEFCNMLPEYADYCYGEGNMHDTVMLLGMLGWDKYDGKVEFITELFPSSGTGQVN
                     AVFPLPA"
     gene            complement(3379..4845)
                     /gene="hpaE"
                     /locus_tag="JN125_003129"
     CDS             complement(3379..4845)
                     /gene="hpaE"
                     /locus_tag="JN125_003129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-carboxymethyl-2-hydroxymuconate semialdehyde
                     dehydrogenase"
                     /protein_id="HAY8872812.1"
                     /translation="MKKVNHWINGKNVAGNDYFQTTNPATGEVLADVASGGEAEINQA
                     VAAAKEAFPKWANLPMKERARLMRRLGDLIDQNVPEIAAMETADTGLPIHQTKNVLIP
                     RASHNFEFFAEVCQQMNGKTYPVDDKMLNYTLVQPVGVCALVSPWNVPFMTATWKVAP
                     CLALGNTAVLKMSELSPLTADRLGELALEAGIPAGVLNVVQGYGATAGDALVRHHDVR
                     AVSFTGGTATGRNIMKNAGLKKYSMELGGKSPVLIFEDADIERALDAALFTIFSINGE
                     RCTAGSRIFIQQSIYPEFVKRFAERANRLRVGDPNDPNTQVGALISQQHWEKVSGYIR
                     LGIEEGATLLAGGPDKPSDLPAHLKGGNFLRPTVLADVDNRMRVAQEEIFGPVACLLP
                     FKDEAEGLRLANDVEYGLASYIWTQDVSKVLRLARGIEAGMVFVNTQNVRDLRQPFGG
                     VKASGTGREGGEYSFEVFAEMKNVCISMGDHPIPKWGV"
     gene            complement(4842..6131)
                     /locus_tag="JN125_003130"
     CDS             complement(4842..6131)
                     /locus_tag="JN125_003130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710093.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate degradation bifunctional
                     isomerase/decarboxylase"
                     /protein_id="HAY8872813.1"
                     /translation="MKGTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNT
                     VIGCGEPIPFPQGEKVLSGATVALIVGKTATKVREEDAAEYIAGYAQANDVSLPEESF
                     YRPAIKAKCRDGFCPIGETVALSNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSAL
                     SEFATLNPGDAILLGTPQARVEIQPGERVRVLAEGFPPLENPVVDEREVTTRKSFPTQ
                     PHPHGTLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYE
                     AELVVVIGKQARNVSEADAMDYVAGYTVCNDYAIRDYLENYYRPNLRVKSRDGLTPML
                     STIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMIA
                     TGTPKGLSDVVPGDEVVVEVEGVGRLVNRIVSEDTAK"
     gene            6403..6849
                     /gene="hpaR"
                     /locus_tag="JN125_003131"
     CDS             6403..6849
                     /gene="hpaR"
                     /locus_tag="JN125_003131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoprotocatechuate degradation operon regulator
                     HpaR"
                     /protein_id="HAY8872814.1"
                     /translation="MHDSLTIALLQAREAAMSYFRPIVKRHNLTEQQWRIVRILAESP
                     SMDFHDLAYRACILRPSLTGILTRMERDGLVLRLKPINDQRKLYISLTKEGQALYNRA
                     QTQIEEAYRQIEAQFTAEKMQQLTHLLEEFIALGNSRQEAIPGDNE"
     gene            6968..8623
                     /gene="tsr"
                     /locus_tag="JN125_003132"
     CDS             6968..8623
                     /gene="tsr"
                     /locus_tag="JN125_003132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HAY8872815.1"
                     /translation="MLKRIKIVTSLLLVLAVFGLLQLTSGGLFFNALKNDKENFTVLQ
                     TIRQQQSTLNGSWVALLQTRNTLNRAGIRYMMDQNNIGSGSTVAELMQSASISLKQAE
                     KNWADYEALPRDPRQSTAAAAEIKRNYDIYHNALAELIQLLGAGKINEFFDQPTQGYQ
                     DGFEKQYVAYMEQNDRLYDIAVSDNNASYSQAMWILVGVMIVVLAVIFAVWFGIKASL
                     VAPMNRLIDSIRHIAGGDLVKPIEVDGSNEMGQLAESLRHMQGELMRTVGDVRNGANA
                     IYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSAS
                     ETAQRGGKVVDNVVQTMRDISTSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQ
                     GRGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVT
                     RVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRL
                     TEAVAVFRIQQQQRETSAVVKTVTPAAPRKMAVADSEENWETF"
     gene            complement(8672..>9564)
                     /locus_tag="JN125_003133"
     CDS             complement(8672..>9564)
                     /locus_tag="JN125_003133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8872816.1"
                     /translation="WFNIKERGRPMGFFNAASTIGVAVSPPILAAMMLVMGWRGMFIT
                     IGVLGIFLAIGWYMLYRNREHVELTAVEQAYLNAGSVNARRDPLSFAEWRSLFRNRTM
                     WGMMLGFSGINYTAWLYLAWLPGYLQTAYNLDLKSTGLMAAIPFLFGAAGMLVNGYVT
                     DWLVKGGMAPIKSRKICIIAGMFCSAAFTLIVPQATTSMTAVLLIGMALFCIHFAGTS
                     CWGLIHVAVASRMTASVGSIQNFASFICASFAPIITGFIVDTTHSFRLALIICGCVTA
                     AGALAYIFLVRQPINDPRKD"
BASE COUNT         2104 a         2579 c         2688 g         2193 t
ORIGIN      
        1 taagcggcat agaacagggt ggtagcgagg ccaaacatgg tggcgctcag accgaggtcg
       61 cgtcccatcg tgagtccggc aaagccgatg ttgatgcgat caaggaacga gaagataaac
      121 agcacgaaca gaaagacgat caggcggcga aatagcttct taataaccgc ctgttgtccg
      181 gcagtcagcg ctttatgctg attcgccgga tcgatactct ccggtatggc aggtgaggtg
      241 tcgctcattt ttcttcctct aatgggattt ttgtagggta cgacaaggtt tatggcggat
      301 gcggcgtaac gccttatccg gtccgcgatt tggtacggct ttttgccgga tgcggcgtaa
      361 acgccttatc cggcctacgg tttggtgcga gtgtaggccg gataagtgca gcgcatccgg
      421 cattaataca cgccgggctt cacggcggtg gcctgcgcac caaaccgtgc tgccagcgct
      481 tcagcggcgc gggcgagcag ggtggtgtca acgccgacgg cgacaaacag cgcgcccagt
      541 tccagatagc gttttgccag ttgctcattg gcgatcagga tccccggcgc tttgcccgat
      601 tcacggatct gcacgatcgc ctgctcaatg gcggcctgta cttccgggtg ctgcggatta
      661 ccggcataac ccatatcggc gctcagatcc gccgggccga taaacacgcc gtcgacgcct
      721 tccacgtcca gaatctgcgg taagttcttc attgcctcac gcgtttcgat ctgcaccagc
      781 acgcacattt gatcgttggc tttttgcagg taatcaggaa tacgattcca gcgcgaggcg
      841 cgggccagcg cactgcccac accgcgaata ccggcggggg gataacgggt ggcgcgtacc
      901 gcttcacggg cttcgtcagc gttttgtacc atcggcacca gcaaggtttg tgtgccgacg
      961 tccagcagtt gtttgatttg caccggatcg ttccacgacg gacgtactac cggctggttg
     1021 gggtagggcg caatcgcctg tagctgggtg agcacggttt gcacgttatt cggcgcgtgc
     1081 tcaccgtcga tcaacaacca gtcgaatcct gctccggcca gtaactctgc gctgtagctg
     1141 ctactcagcc ccagccataa tccgatctgc ggacggcctg ctttcagcgc cgctttaaag
     1201 ctgttttcca tcgttctctc cttaaacaaa gcggcagcta atggaaccca tgttgccgta
     1261 atcgacgtgg aaggtgtcgc ccttacgcgc cggaaccggg cgggtgaacg aaccaccgag
     1321 aatgatttgc ccggcttcca gttgtacgtc atacggtgcg agtttgttcg ccagccaggc
     1381 cacgccgttt gccggatgat tcagcacgcc agcggcgacg ccggtttctt caatcacgcc
     1441 attgcgatac atcagggcgg agatccaacg cagatccagt tcgtctggtt tgatcggacg
     1501 accaccgagg atcaccccgg cgttggcggc gttatcagaa atggtgtcga acactttgcg
     1561 cgggcgctgg gtttccggat cgatgttgtg gcagcgagcg tcgatcagct ccagcgccgg
     1621 gatcacgtag tccgtggcgt tgtagacgtc gaacagcgtg cagtttggcc cacgcagcgg
     1681 ttttgccagc acgaaagcca gctccacttc aatgcgcggc acgataaagc gatcggtcgg
     1741 gatatcgctg ccatcgtgga agaacatgtc atccagcagg gcaccgtaat ctggttcgct
     1801 gatctgcgag ctggcctgca ttgcttttga ggtcagaccg attttgtggc ctttcagcgt
     1861 acggccttcg gcgattttca ggcgaaccca ttcgcgctgc accgcgtaag cgtcttcgat
     1921 ggtgatctct gggtaatcca gcgagatcgc gcggatctgt tcgcgctgtt tttctgcctg
     1981 atccagacgc tgggcgatca gggtgtgggt gtgtttatcg aacatagcga tatcctgtgg
     2041 cattgccgga tgcggctgcg ccttatccgg cctacggtgt acggtttggg gttttgtagg
     2101 cccggtaagc gcagcgccac cgggcaatct gcgcgctact taaacaatgc gtgcacgttg
     2161 ttttgtttaa aattcagcgt cggatgcagc tcttcaatct caaacgacaa cgccagcagg
     2221 cggctctcca tcagggcggc gaagtgcgtt ttaatcagtt caaacagcat ttcacccgcc
     2281 tgctgacggc tttccaggct gcgacctgcg ccgattttca acgtcatatg cacgaaggca
     2341 taatcacgct gcccgtcggc catctgccag gtatcgaccc aatgcacgcg gctgcgaata
     2401 cccgccagcg gaaaaatacc cgtggctgcc agcgtcggat tcactttggc gaacaacccc
     2461 ggcaggtcgg cttcttcgcg gatgttgtca ctgcattcaa cgataaagtg cggcataaaa
     2521 cgtccttacg cgggaagcgg gaaaacagcg ttaacctgac cggtgccaga gcttgggaat
     2581 agctcggtga tgaactccac cttgccgtcg tatttatccc agccgagcat ccccagcagc
     2641 atcaccgtgt cgtgcatatt gccttcgccg tagcagtagt cggcgtactc cggcagcata
     2701 ttgcagaact ctttgaactg gccttcgcgc cacaacttca ccacgcgctc gtccatctgg
     2761 cggtcgaact cgcgggtgta gctgttcatc ccttcttctg cacgctgatc gtcaataaag
     2821 cggtgcgata acgaaccgct ggcaaggacc ggcacggtgc cgtcgtactg ttcgatcgct
     2881 ttcagaatcg cttcgcccag cttgcggctg tcggcaaaat cgtgaaccgt gcagaaagcc
     2941 gaaatggaga ccactttgaa gtgcttgtct tcattcatgt agcgcatcgg caccagcgtg
     3001 ccgtattcca gtttcaggct gggaatgttg tgcgcttttg cccgcacgcc gagctttaag
     3061 gcttcatcgg caataagctg ccccaactcc gggttgccct cgtagttgta ggtcatatcg
     3121 cggataaaat gcggcagctc gttgctggtg tagacgcctt caaaatggtc tgcacagttg
     3181 atgtgataag cactgttgac cagccagtgg gtatcgaaaa cgataatggt atcgacgccc
     3241 atttcccggc aacgcttgct gatctcttta tgcccgtcga tcgcgccctg gcggcaaccg
     3301 tggtttttcc ctggcagttc agagagatac atcgacggta cgtgcgtgat cttggcggct
     3361 aacgctaact tacccatatc agactcccca tttcggaatt ggatggtcgc ccatggaaat
     3421 gcagacgttc ttcatttccg cgaacacttc gaagctgtac tcaccgcctt cacgcccggt
     3481 gccggaggct tttacgccgc caaatggctg gcgcaggtca cgcacgttct gggtgttgac
     3541 gaacaccatg ccagcttcaa tgccacgcgc caggcgtaac actttgctga catcctgtgt
     3601 ccagatgtac gacgcgaggc cgtactccac gtcgtttgcc aggcgtaagc cttcagcttc
     3661 gtctttaaac ggcagcaggc aggcgaccgg cccgaaaatc tcttcttggg cgactcgcat
     3721 acggttatca acgtctgcca gcaccgttgg gcgcaggaag ttgccgcctt tcaggtgtgc
     3781 aggcaggtca gacggtttat ccgggccgcc cgccagcagg gtggcgcctt cttcaatgcc
     3841 gagacggata tagccggaga ctttttccca gtgctgctgg ctgataagcg cgccaacctg
     3901 ggtattcgga tcgttcggat cgcccacgcg cagacggttg gcgcgttcgg caaagcgttt
     3961 aacgaattcc gggtagatgc tttgctgaat aaagatgcgt gaaccggcgg tgcagcgttc
     4021 gccgttgatc gagaagatgg tgaacagggc ggcgtccagc gcgcgttcaa tatcggcatc
     4081 ttcaaaaatc agcaccggcg atttaccgcc cagttccatg gagtattttt tcagcccggc
     4141 gtttttcatg atgttgcgcc cggtggccgt accgccggtg aacgacacgg cacgtacgtc
     4201 atgatgacga accagcgcat cccctgcggt tgcgccgtag ccctgtacca cgttcagcac
     4261 gcctgccgga ataccggctt ccagcgccag ctcacccagg cggtcagcgg tcagcgggga
     4321 gagttccgac attttcagta ccgcggtatt gcccagcgcc agacacggcg cgaccttcca
     4381 tgtggcggtc ataaacggta cgttccacgg cgataccagc gcacaaacgc ccaccggctg
     4441 caccagcgtg tagttgagca tcttgtcgtc aaccggatag gtcttgccgt tcatctgctg
     4501 gcagacttcc gcgaaaaatt caaagttgtg ggaagcgcgt gggatcaaca catttttggt
     4561 ctgatggatc ggcaggccgg tgtccgcggt ttccatcgcg gcgatctctg gcacgttctg
     4621 gtcgatcaga tcgcccagac ggcgcatcag gcgcgcacgc tctttcatcg gcagattggc
     4681 ccatttcggg aacgcctctt tcgctgccgc taccgcctga ttgatctccg cttcaccgcc
     4741 agaggccaca tccgccagca cttcacccgt tgccggattg gtggtctgga agtagtcgtt
     4801 acctgcaaca tttttgccgt tgatccaatg atttactttt ttcatttcgc tgtatcctca
     4861 ctcacaattc ggttcaccag gcggcccacg ccttctactt ccaccactac ttcatcgcca
     4921 ggcaccacgt cagataagcc tttgggtgtg ccggtggcga tcatgtcgcc cggattcagg
     4981 gtcataaatt cacttaagta ggcgatcagg aagggcacgc tgaagatcag atcggcggtg
     5041 gtgccttgct ggcgtaactc gccgttgacg aaggtgcgaa gggtcagatt atgcgggtcc
     5101 gggatcgcct ctttcggcac gatggttgaa agcatcggcg tcagtccgtc gcggcttttt
     5161 acccgcaggt tagggcggta gtagttttcc agatagtcac gaatggcgta gtcgttacac
     5221 acggtgtagc ccgcgacata atccatggca tcggcttcgc tgacgttacg cgcctgtttg
     5281 ccaataacta ccaccagctc cgcttcatag tgcatgtatt caatattgtt tggacgcacg
     5341 gaggtctggt tatcgccagt gagggtattt ggcgctttca ggaacaccag cggttcttcc
     5401 ggtggcttaa attccagttc gctggcgtgg tcggcgtagt tcaggccgag ggcaaacagc
     5461 gtgccgtgcg ggtgtggctg cgttgggaag ctcttgcgcg tggtcacttc acgttcgtcc
     5521 actaccggat tttccagcgg cgggaaacct tctgcgagaa cacgaacgcg ctcgcctggc
     5581 tgtatttcca cgcgcgcctg tggcgtgccg agcagaatgg cgtcgcctgg attcagcgtg
     5641 gcaaattcgc tcagggcgct cagcaactgc gcggcgttac gttgtaaatc ggcggtattc
     5701 cagtgatcgg caggacgccc gttgatctcg gtatagatgg tcagattatc gacattgctg
     5761 agagccacgg tttcgccaat ggggcagaat ccatcacgac attttgcttt gattgccggg
     5821 cggtaaaagc tctcttccgg caggctgacg tcgttagcct gcgcatatcc ggcgatgtac
     5881 tctgccgcat cttcttcacg tactttcgtc gccgtttttc ccacaatcag cgcaacagtc
     5941 gcaccgctca gtaccttttc accctgtgga aagggaatcg gttcaccgca accaatcacc
     6001 gtattgcgcg gtttaataaa ccagaccgca gttttaggcg gggctttgta gggggattgc
     6061 tggaacgctt cctgccatgc atcaagttgg ctgcgatggt tcaacgctac ggcgaagata
     6121 gtgcctttca ttaccactcc tcggattcga tcatcttaat cattaatatg ttaatgatta
     6181 cttttattcc cgattgcgta gtttggcaaa aataagtgat gtaaatgtga tctaattaac
     6241 aaactattta catttaaaga taataaaata ttaaatatca gtaagttaat aaaatatcat
     6301 caattttgat aaaatcagga attgcagggg cagcgcagtc ccggtaacgt gacgattaac
     6361 tgtttctata ttaatgattt tgaatttttc aggggaaaga taatgcacga ctcactaacc
     6421 attgcgttgc tccaggcgcg agaagcggcg atgagttatt ttcgcccaat cgttaaacgg
     6481 cataatttga ctgagcaaca gtggcgcatc gtgcgtattc tggcggaaag cccatcaatg
     6541 gattttcacg atctggcgta tcgcgcctgc attttgcgcc caagcctgac cgggattctc
     6601 acgcggatgg aacgcgacgg tttagtgttg cgattaaagc cgatcaatga tcagcggaag
     6661 ctctatatct cgctaaccaa agaggggcag gcgctgtata accgcgctca gacacagatt
     6721 gaagaagcct atcggcagat tgaagctcag tttactgccg agaaaatgca acagttaacc
     6781 catctgttag aggaatttat tgctctgggc aattcccgac aagaagccat cccgggcgat
     6841 aatgaataac tttttagtat ctgataacca gcgcctggtt tttccatgga tggcgggtta
     6901 caccctttca taaagttttt gctttccagg ccgaaaatct tgcatcggtc cacaggaaag
     6961 agaaaccatg ttaaaacgta tcaagatcgt gaccagctta ctgctggttt tggccgtttt
     7021 tggcctttta caactgacat caggcggtct gttctttaat gccttaaaga atgacaaaga
     7081 aaatttcact gttttacaaa ccattcgcca gcagcaatcc acgctgaatg gcagctgggt
     7141 cgcgttgttg cagacgcgta acaccctcaa ccgcgcgggt atccgctaca tgatggatca
     7201 gaataatatt ggtagcggtt caaccgttgc tgagctgatg cagagtgcca gtatttcgct
     7261 gaaacaggcg gaaaaaaact gggcggatta cgaagcgttg ccgcgtgacc cgcgtcagag
     7321 caccgccgca gcggcagaga tcaaacgtaa ttacgatatt tatcacaatg cgctggcgga
     7381 gctgatccaa ctgttaggtg caggcaaaat caacgagttc tttgatcagc cgacccaggg
     7441 atatcaggac ggtttcgaga agcagtatgt ggcttacatg gagcaaaacg atcggctcta
     7501 tgatatcgcc gtcagcgata acaatgcctc ctacagccag gcgatgtgga ttctggtggg
     7561 cgtgatgatc gtcgtactgg cggtcatctt cgccgtctgg ttcggtatta aagcctcgct
     7621 ggtagcgcca atgaatcgcc tgattgacag cattcgtcat attgcaggcg gcgatctggt
     7681 gaaaccgatt gaggtggatg gctctaatga gatggggcaa ctggcagaga gtttgcgcca
     7741 tatgcaggga gagctgatgc gtaccgtcgg tgatgtgcgc aacggggcca atgccatcta
     7801 tagcggtgcc agcgaaatcg ccaccggcaa taacgatctc tcttcgcgca ccgagcaaca
     7861 ggccgcttcg ctggaagaga cggcagccag catggagcaa ctgaccgcaa cggtgaagca
     7921 gaacgccgaa aatgcgcgcc aggccagcca tctggcgtta agtgcttctg aaacggcgca
     7981 acgcggcggc aaagtggtag ataacgtggt gcagactatg cgcgatatct ccaccagttc
     8041 gcagaaaatc gccgatatta tcagcgtaat tgacggcatt gccttccaga ccaatattct
     8101 ggctttgaac gcggcggttg aggctgcgcg tgcgggtgag caagggcgcg gttttgcggt
     8161 ggtcgcggga gaagtgcgta atctggccca gcgcagcgcc caggcggctc gtgaaattaa
     8221 aagcctgatt gaagactcgg tggggaaagt ggatgttggc tctacgctgg tcgaaagcgc
     8281 cggggaaaca atggcggaga ttgtcagcgc cgtgacccgc gtgacggaca ttatgggcga
     8341 aattgcttct gcttctgatg agcagagccg tggtatcgat caggttggct tagcggttgc
     8401 tgagatggac cgggtaactc aacagaacgc cgcgctggtg gaagagtctg ccgctgccgc
     8461 cgccgcgctg gaagagcagg ccagtcgcct gaccgaagca gtggcagtgt tccggattca
     8521 gcaacagcag cgtgaaacat cggctgtggt aaaaaccgtg acgccagctg cgccgcgtaa
     8581 aatggccgtg gcagatagcg aggagaactg ggaaacattt taatcgccat gaaaatgccc
     8641 gataagcaaa atgttatcgg gcataaggag attaatcttt acgtgggtcg ttgatcggct
     8701 gacgaaccag gaagatgtac gccagtgccc ccgctgcggt gacgcaaccg cagatgatta
     8761 gtgccagacg gaatgagtgg gtggtatcaa caataaaacc agtaatgatc ggcgcaaaag
     8821 aggcgcagat gaagctggca aagttctgga tactgcccac cgacgcagtc atgcgagaag
     8881 caactgcgac gtggatcaag ccccagcagg atgttccggc aaagtgaata cagaacagtg
     8941 ccatgccaat cagcagaacc gccgtcatgg atgttgtcgc ttgtggtact atcagcgtaa
     9001 aggcggcaga acagaacatc ccggcaataa tgcagatctt acggctttta atcggagcca
     9061 ttcccccttt gaccagccag tcggtaacgt aaccgttgac cagcatcccg gcagccccaa
     9121 acaggaaagg gatagccgcc atcaaccctg tgctttttaa atccaggtta taggctgttt
     9181 gcaggtaacc aggaagccag gccagataca gccacgcagt gtagttgatg ccactgaatc
     9241 cgagcatcat tccccacatt gtacggttac ggaacaggct gcgccattcg gcaaaactga
     9301 gcggatctcg gcgggcattg acgctacctg cattgagata agcttgctca acggcagtca
     9361 gttctacgtg ctcgcggttg cgatagagca tataccagcc gatggcgaga aaaatcccca
     9421 gtacaccaat ggtaataaac atcccgcgcc agcccatcac cagcatcatc gccgccagaa
     9481 tcggtgggct tacggcaacg ccaatggtag aagctgcgtt gaagaagccc atcgggcgtc
     9541 cgcgctcttt gatgttgaac cagt
//
LOCUS       DADMHM010000152         9485 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.155, whole genome shotgun sequence.
ACCESSION   DADMHM010000152 DADMHM010000000
VERSION     DADMHM010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9485)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9485)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9485
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.155"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(72..260)
                     /locus_tag="JN125_003134"
     CDS             complement(72..260)
                     /locus_tag="JN125_003134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872817.1"
                     /translation="MLTRKCIDPVLLSVGAEKLSQREWDWMKMLKPMDPPPAMVAASI
                     LERRGDTAALTRLQDTGG"
     gene            316..1386
                     /locus_tag="JN125_003135"
     CDS             316..1386
                     /locus_tag="JN125_003135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001249766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3748 domain-containing protein"
                     /protein_id="HAY8872818.1"
                     /translation="MRQQQDEQGRFSICSRQAAVVHPKSEKYVFIHGPENPDETWYYD
                     FHHRRGVIAEGGKVSNLDAMDITAPYTPGALRGGSHVHVFSPNGERVSFTYNDHVMHE
                     LDPALDLRNVGVAAPFGPVNVQKQHPREYSGSHWCVLVSKTTPTPQPGSDEINRAYEE
                     GWVGNHALAFIGDTLSPKGEKVPELFIVELPQDEAGWKAAGDAPLSGTETTLPAPPRG
                     VVQRRLTFTHHRAYPGLVNVPRHWVRCNPQGTQIAFLMRDDNGIVQLWLISPQGGEPR
                     QLTHNKTDIQSAFNWHPSGEWLGFVLDNRIACAHAQSGEVEYLTENHANPPSADAVVF
                     SPDGQWLAWMEGGQLWITETDR"
     gene            complement(1388..1720)
                     /locus_tag="JN125_003136"
     CDS             complement(1388..1720)
                     /locus_tag="JN125_003136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418143.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceK/YidQ family lipoprotein"
                     /protein_id="HAY8872819.1"
                     /translation="MIRNVLLAFMICSGMTLLGGCSSVMSHTGGKEGTYPGTRASATM
                     IGDDETNWGTKSLAILDMPFTAVMDTLLLPWDVFRKDSSVRSRVEKSEANAQATNAVI
                     PPARMPDN"
     gene            2026..2439
                     /gene="ibpA"
                     /locus_tag="JN125_003137"
     CDS             2026..2439
                     /gene="ibpA"
                     /locus_tag="JN125_003137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006687722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock chaperone IbpA"
                     /protein_id="HAY8872820.1"
                     /translation="MRNFDLSPLYRSAIGFDRLFNHLENNQSQSNGGYPPYNVELVDE
                     NHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLA
                     ENIHVRGANLVNGLLYIDLERVIPEAKKPRRIEIN"
     gene            2551..2979
                     /gene="ibpB"
                     /locus_tag="JN125_003138"
     CDS             2551..2979
                     /gene="ibpB"
                     /locus_tag="JN125_003138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709512.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock chaperone IbpB"
                     /protein_id="HAY8872821.1"
                     /translation="MRNFDLSPLMRQWIGFDKLANALQNAGEGQSFPPYNIEKSDDNH
                     YRITLALAGFRQEDLEIQLEGTRLSVKGTPEQPKEEKKWLHQGLMNQPFSLSFTLAEN
                     MEVSGATFVNGLLHIDLIRNEPEPIAAQRIAISERPALNS"
     gene            3175..4836
                     /locus_tag="JN125_003139"
     CDS             3175..4836
                     /locus_tag="JN125_003139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312652.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HAY8872822.1"
                     /translation="MSDIALTVSILALVAVVGLFIGNVKFRGIGLGIGGVLFGGIIVG
                     HFVSQAGMTLSSDMLHVIQEFGLILFVYTIGIQVGPGFFASLRVSGLRLNLFAVLIVI
                     IGGLVTAILHKLFDIPLPVVMGIFSGAVTNTPALGAGQQILRDLGTPMEMVDQMGMSY
                     AMAYPFGICGILFTMWMLRVIFRVNVETEAQQHESSRTNGGALIKTINIRVENPNLHD
                     LAIKDVPILNGDKIICSRLKREETLKVPSPDTIIQLGDLLHLVGQPADLHNAQLVIGQ
                     EVDTSLSTKGTDLRVERVVVTNENVLGKRIRDLHFKERYDVVISRLNRAGVELVASGD
                     ISLQFGDILNLVGRPSAIDAVANVLGNAQQKLQQVQMLPVFIGIGLGVLLGSIPVFVP
                     GFPAALKLGLAGGPLIMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLSVVGLKS
                     GGDFVNTLVNGEGLSWIGYGALITAVPLITVGILARMLAKMNYLTMCGMLAGSMTDPP
                     ALAFANNLHPTSGAAALSYATVYPLVMFLRIITPQLLAVLFWSIG"
     gene            complement(4833..5549)
                     /locus_tag="JN125_003140"
     CDS             complement(4833..5549)
                     /locus_tag="JN125_003140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAY8872823.1"
                     /translation="MIYKSIAERLRIRLNSADFTLNSLLPGEKKLAEEFAVSRMTIRK
                     AIDLLVAWGLVVRRHGSGTYLVRKDVLHQTASLTGLVEVLKRQGKTVTSQVLIFEIMP
                     APPAIASQLRIQINEQIYFSRRVRFVEGKPLMLEDSYMPVKLFRNLSLQHLEGSKFEY
                     IEQECGILIGGNYESLTPVLADRLLARQMKVAEHTPLLRITSLSYSESGEFLNYSVMF
                     RNASEYQVEYHLRRLHPEKS"
     gene            5844..7460
                     /locus_tag="JN125_003141"
     CDS             5844..7460
                     /locus_tag="JN125_003141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312650.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HAY8872824.1"
                     /translation="MLSQIQRFGGAMFTPVLLFPFAGIVVGLAILLQNPMFVGESLTD
                     PNSLFAQIVHIIEEGGWTVFRNMPLIFAVGLPIGLAKQAQGRACLAVMVSFLTWNYFI
                     NAMGMTWGSYFGVDFTQDAVAGSGLTMMAGIKTLDTSIIGAIIISGIVTALHNRLFDK
                     KLPVFLGIFQGTSYVVIIAFLVMIPCAWLTLLGWSKVQMGIESLQAFLRSAGALGVWV
                     YTFLERILIPTGLHHFIYGQFIFGPAAVEGGIQMYWAQHLQEFSLSAEPLKSLFPEGG
                     FALHGNSKIFGAVGISLAMYFTAAPENRVKVAGLLIPATLTAMLVGITEPLEFTFLFI
                     SPLLFAVHAVLAASMSTVMYLFGVVGNVGGGLIDQVLPQNWIPMFSNHADMMLTQIAI
                     GLCFTLLYFVVFRTLILQFNMCTPGREDAEVKLYSKAEYKASRGQTTAAEPKKELDQA
                     AGILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVII
                     GLHVSQLREQLDSLINSHQSAENVAITEAV"
     gene            7460..8783
                     /locus_tag="JN125_003142"
                     /pseudo
     CDS             7460..8783
                     /locus_tag="JN125_003142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312649.2"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-alpha-glucosidase"
     gene            complement(8780..8854)
                     /locus_tag="JN125_003143"
                     /pseudo
     CDS             complement(8780..8854)
                     /locus_tag="JN125_003143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709516.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
     gene            complement(8914..9345)
                     /gene="tnpA"
                     /locus_tag="JN125_003144"
                     /pseudo
     CDS             complement(8914..9345)
                     /gene="tnpA"
                     /locus_tag="JN125_003144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313209.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
     gene            9353..>9485
                     /locus_tag="JN125_003145"
     CDS             9353..>9485
                     /locus_tag="JN125_003145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001458895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAY8872825.1"
                     /translation="MKRLQAFKFQLRPGGQQEREMRRFAGACRFVFNRALARQNENHE
                     "
BASE COUNT         2207 a         2363 c         2517 g         2398 t
ORIGIN      
        1 gtccagcact ggttggccgt gaacagacgt ttcagcgggc ggggagtaaa agcggacaac
       61 atgaggacgg attaaccccc ggtatcctgt agccgggtaa gggctgctgt gtcgccacgg
      121 cgctccagga tggaggccgc gaccatcgca ggtggtgggt ccatgggttt gagcatcttc
      181 atccagtccc attcacgttg tgagagcttc tcagcaccaa cagagagcag aacgggatct
      241 atacatttgc gggtcaacat aagaggatga gtccttaata aaacaggtcc tcagagcata
      301 catattctgc ggagcgtgcg gcaacaacag gacgaacagg ggcggttttc aatttgcagc
      361 cgtcaggctg ccgtggttca tccgaagtca gagaaatatg ttttcatcca tggcccggaa
      421 aatcctgatg aaacatggta ttacgatttc catcatcgac gcggagtcat tgctgaaggc
      481 ggcaaggtga gcaatctcga tgcaatggat attaccgcgc cgtatacgcc aggagcgctg
      541 cgcggcggca gccatgtgca tgtctttagc ccgaacggtg aaagggtgag ctttacctat
      601 aacgaccatg taatgcatga actcgatccg gcgctggatt tgcgaaacgt cggtgttgct
      661 gcgccgtttg gcccggtcaa cgtacaaaag cagcatccgc gtgaatacag cggtagccac
      721 tggtgcgtgc tggtgagtaa aaccacgccc acgccgcagc ctggcagcga tgaaatcaat
      781 cgtgcttatg aagaaggatg ggtaggaaat cacgcgctgg cgtttattgg cgacacactt
      841 tcgccaaagg gcgagaaagt gccggagctg tttatcgttg agttaccgca agatgaagct
      901 ggctggaaag cggcaggtga tgcgccgtta agtggaacgg aaaccaccct gcccgcgcca
      961 ccgcgcggcg tcgtgcagcg acgtttaacc tttacccacc atcgggctta tccggggtta
     1021 gtcaacgtcc cgcgccactg ggtgcgctgt aatccgcagg gtacgcaaat cgcgttttta
     1081 atgcgtgatg ataacggcat tgtgcaactg tggcttatct cgccacaggg cggcgagccg
     1141 cgccagttaa cccataacaa aacggatatt cagtctgcat ttaactggca tccgtcagga
     1201 gaatggttgg gctttgtgct ggataatcga attgcttgtg cccatgcgca aagtggcgag
     1261 gttgagtatt taaccgaaaa ccacgccaat ccaccttctg cggacgccgt ggtcttctcg
     1321 ccggatggtc aatggctggc gtggatggaa ggcggccagc tgtggatcac cgaaactgat
     1381 cgctaaatca gttatcaggc attctggccg gtggaataac cgcattggtg gcttgcgcgt
     1441 tggcttcgct tttttcaacg cgtgagcgca ccgagctgtc tttgcggaac acatcccacg
     1501 gcagtaaaag cgtgtccatc acagcggtaa acggcatatc gagaatcgcc agcgacttag
     1561 tgccccagtt ggtttcatcg tcgccaatca tggttgcgct ggcgcgggtg ccgggatacg
     1621 ttccttcttt ccctccggta tgggacatca cgctggagca tcctccgagt aatgtcattc
     1681 cgctgcatat catgaacgct aacaacacat ttcttatcat aataaattca tctgttgatc
     1741 gtgggtgttg gcctgatgag ttatagcgat cccttgctga aaataacatc atcattacgt
     1801 cgcactgtgg cggctatcgc actttaacgt ttcgtgctgc cccctcagtc tatgcaatag
     1861 accataaact gcaaaaaaaa gtccgctgat aaggcttgaa aagttcattt ccagacccat
     1921 ttttacatcg tagccgatga ggacgcgcct gatgggtgtt ctggctacct gacctgtcca
     1981 ttgtggaagg tattacattc tcgctgattt caggagctat tgattatgcg taactttgat
     2041 ttatccccgc tttaccgttc tgctattgga tttgaccgtt tgtttaacca cttagaaaac
     2101 aaccagagcc agagtaatgg cggctaccct ccgtataacg ttgaactggt agacgaaaac
     2161 cattaccgca ttgctatcgc tgtggctggt tttgctgaga gcgaactgga aattactgcc
     2221 caggataatc tgctggtggt gaaaggtgct cacgccgacg aacaaaaaga gcgcacctat
     2281 ctgtaccagg gcatcgctga acgcaacttt gaacgcaaat tccagttagc tgagaacatt
     2341 catgttcgtg gggctaacct ggtaaatggt ttgctgtata tcgatctcga acgcgtgatt
     2401 ccggaagcga aaaaaccgcg ccgtatcgaa atcaactaat tccctaaggc cgcctgacgc
     2461 ggcctgacat ctccatgctc gccgtcaggg agcatatgcg aatcttcgga tttgcaggta
     2521 cttactcgct tcttagaagg agaaatgact atgcgtaact tcgatttatc cccactgatg
     2581 cgtcaatgga tcggttttga caaactggcc aacgcactgc aaaacgccgg tgaaggccag
     2641 agcttcccgc cgtacaacat tgagaaaagc gacgataacc actaccgcat tacccttgcg
     2701 ctggcaggtt tccgtcagga agatttagag attcaactgg aaggtacgcg cctgagcgta
     2761 aaaggcacgc cggagcagcc aaaagaagag aaaaaatggc tgcatcaagg gcttatgaat
     2821 cagccattta gcctgagctt tacgctggct gaaaatatgg aagtctctgg cgcaaccttc
     2881 gtaaacggtt tactgcatat tgatttaatt cgtaatgagc ctgaacccat cgcagcgcag
     2941 cgtatcgcta tcagcgaacg tcccgcgtta aatagctaac tagctattct ctttgccccg
     3001 ccattctggt ggggcttttt ttgtctttct tcttcaacaa tgcgttaaat ttcgactgtt
     3061 taagatattt cggcacgttc tttcccgtga taatgtgcgc tataaggcaa atctgcttca
     3121 ccgattcagc cataatccgt agcaattaaa atgttatctc aagagaaatg gacgatgagt
     3181 gatatagcat taacggtcag tattctggct ttggtggcag tcgtcggttt gtttatcggc
     3241 aacgtcaaat ttcgcggcat aggattaggt attggcggcg tgctgtttgg tgggatcatc
     3301 gtcggccatt ttgtttctca ggcggggatg acattaagta gcgatatgct gcatgttatt
     3361 caggaatttg gcctgatcct gttcgtttat accatcggga ttcaggtagg gccgggcttc
     3421 tttgcctcat tgcgcgtctc cggattacgc ctcaacctgt ttgctgttct aatcgtcatc
     3481 atcggtggtc tggttaccgc catcctgcat aaactgtttg atattccact gccggtagtg
     3541 atggggattt tctccggtgc ggttaccaat acgccagcgc tgggggcagg gcagcagatc
     3601 ttgcgcgacc tgggtacacc aatggaaatg gtcgatcaga tggggatgag ttacgcgatg
     3661 gcgtatccat tcggcatttg cgggattttg ttcaccatgt ggatgttgcg ggttattttc
     3721 cgcgtcaatg tcgagacaga agctcagcag cacgagtctt cacgcaccaa tggcggcgcg
     3781 ctgatcaaga ctatcaatat tcgcgttgag aaccctaacc tgcatgattt agccattaaa
     3841 gatgtaccga ttctcaacgg cgacaaaatt atctgctcgc gtctgaaacg cgaagaaacc
     3901 ctaaaagttc cttcgccaga taccattatc caactgggcg atttgctgca tctggtgggg
     3961 cagccagcgg atttacataa tgcgcaactg gtgattggtc aggaggtcga tacttcgctg
     4021 tccacgaaag gcactgattt gcgcgtcgag cgtgtggtgg tcaccaatga aaacgtgctc
     4081 ggaaaacgta ttcgcgacct gcactttaaa gaacgctatg acgttgttat ctcgcgcctg
     4141 aaccgtgccg gggtcgaact ggtcgccagt ggcgatatca gcctgcagtt cggcgatatc
     4201 ctcaatctgg tggggcgtcc gtccgcaatt gatgccgttg ccaatgtgct ggggaatgcg
     4261 cagcaaaaac tgcaacaggt tcagatgctg ccagtgttta ttggcatcgg gcttggcgta
     4321 ttgttaggtt ctattcccgt ctttgtgcct gggttcccgg ccgcgttgaa actggggctg
     4381 gcgggcggtc cgctgattat ggcgttgatc ctcgggcgta tcggcagtat cggcaagctg
     4441 tactggttta tgccgccaag tgccaacctc gcgctgcggg agctggggat cgtgctgttc
     4501 ctctcggtcg ttggtctgaa atctggtggg gattttgtga ataccctggt caatggcgaa
     4561 gggctaagct ggattggtta tggtgccctg atcaccgccg ttccgctgat tactgttggc
     4621 attctggcgc ggatgttagc caaaatgaat tacctgacca tgtgcgggat gctggcaggt
     4681 tccatgaccg atcctccggc gctggcgttt gctaataatc ttcatccaac cagtggtgcg
     4741 gcggcgctct cttacgccac tgtctatccg ttagtgatgt ttctgcgaat tatcaccccc
     4801 caattactgg cggtgctctt ctggagtatc ggttaactct tttccgggtg gagtcgccgt
     4861 aaatggtact ccacctggta ttcgctggca tttctgaaca tcactgaata attcaaaaac
     4921 tccccgctct cgctatatga caacgaggtg atccgcagca gtggcgtgtg ttccgctacc
     4981 ttcatttgcc gcgccagcag tctatcggcg agcaccggcg tcaggctttc ataattaccg
     5041 ccaatcaaaa tcccacactc ttgttcaata tattcaaact tcgacccttc cagatgttgc
     5101 agcgaaagat tacggaacag tttaaccggc atatagctgt cttccagcat cagcggtttc
     5161 ccttccacaa aacgaacgcg acgggagaag tagatctgct cgttgatttg aatccgtaac
     5221 tggctggcaa tggccggagg cgcaggcatg atttcaaaaa tcagcacctg gctggtgacc
     5281 gtttttccct gccgttttaa cacctccacc agtccggtca ggctggcggt ttgatgcagc
     5341 acatctttgc gcaccaggta agtgccgctg ccgtggcggc ggaccaccag cccccacgct
     5401 accagcaggt caatcgcttt acggatggtc atccgggata ctgcaaattc ttccgccaac
     5461 tttttttcac cgggaagaag gctgtttagc gtgaaatccg cggaattaag tcgaattctt
     5521 aaccgctccg caatgctttt gtagatcatc tctagatctc ttttttgcct gcaagcccgg
     5581 gtaatgcgcc cacaagttct gcttaatcga ttgaaaaaac atcttttttt aaagatgtgt
     5641 tcgatgctgt gtaccagtgc tcacagatgt ctactttttc gcgaaaacgt agatctctac
     5701 cgcccaacga aaagcatgaa agcgatcacg aatcccattg ggtcgtcatg ttctgccgat
     5761 cgcatcttcc tatcctcgct ccaggcctgc cgcataacca atcaggcttc ctacttacag
     5821 aattgagaaa agaggatgtg gaaatgctca gtcaaattca acgctttggc ggcgcgatgt
     5881 tcacgccagt gctgctgttt cccttcgccg ggattgtggt gggtcttgcc atcttgctgc
     5941 aaaacccgat gtttgtcggg gaatcactga ccgatccgaa cagtttattc gcgcaaatcg
     6001 tacacattat tgaagagggc ggttggacgg tattccgtaa tatgccgctg atttttgctg
     6061 tcggtttacc cattggcctt gctaagcaag cgcaggggcg tgcttgtctg gcggtgatgg
     6121 tgagtttcct gacctggaac tatttcatca acgcgatggg aatgacctgg ggaagctact
     6181 tcggcgtcga tttcactcag gacgcggtgg caggtagcgg tctgacaatg atggccggga
     6241 ttaaaaccct cgataccagc attatcggcg caattatcat ttccggcatt gtgacggcgc
     6301 tgcataaccg tctgttcgat aaaaaactgc cggtttttct cggcattttc caggggacgt
     6361 cttatgtggt gattatcgcc ttcctggtga tgatcccctg tgcctggctg acgttgctcg
     6421 gctggtcaaa agtacaaatg gggattgaat ctctgcaagc gttcctgcgt tcggcgggtg
     6481 cacttggggt gtgggtttac accttcctcg aacgtattct gatcccaacc ggtttacacc
     6541 acttcatcta cggacagttt atctttggtc cggcagctgt tgaaggcggc attcagatgt
     6601 actgggcgca gcatctgcaa gagttcagtc tgagcgccga gccgctgaaa tcgttgttcc
     6661 cggaaggcgg ttttgccctg cacggtaact caaaaatctt tggtgccgtg ggcatttctt
     6721 tagcgatgta cttcactgcc gcaccggaaa atcgggtaaa agtggcgggc ttgctgattc
     6781 ccgcaacctt aaccgccatg ctggtgggaa ttaccgaacc gctggaattt accttcctgt
     6841 tcatttcacc gttgctgttt gcggtacacg ccgtgctggc ggcctcaatg tcgaccgtga
     6901 tgtatctctt tggtgtggtg ggcaacgtgg gcggaggtct gattgaccag gttttaccgc
     6961 aaaactggat cccgatgttc agcaaccacg cggatatgat gctgacccaa atcgccattg
     7021 ggttgtgctt taccctgctg tacttcgtgg ttttccgcac actgattctg caattcaaca
     7081 tgtgcacgcc gggacgtgaa gatgcggaag tgaaactcta ctcaaaagcc gaatacaaag
     7141 cctcgcgagg ccaaaccacc gctgcagagc caaaaaaaga gctggatcag gctgccggta
     7201 tcctgcaagc cctgggcggg gtcggcaata tctccagcat taacaattgc gcgacgcgtt
     7261 tacgtattgc actgcatgac atgtcacaaa cgctggatga cgaagtcttt aaaaagctgg
     7321 gagcgcacgg cgtcttccgt agtggcgatg ccattcaggt gatcattggt ctgcatgtat
     7381 cccagctgcg tgaacagctc gatagcttaa ttaattctca tcaatcagca gaaaatgttg
     7441 ccattacgga ggcagtataa tgaccaaatt ctcagtggtt gtcgcaggcg gtggaagcac
     7501 ctttacgcca ggtatcgtgt tgatgctcct ggcgaatcag gaccgtttcc cgcttcgtgc
     7561 actgaaattt tatgataacg atggtgcgcg gcaggaagtg attgccgaag cctgtaaagt
     7621 catccttaaa gagaaagcgc cggacattgc gtttagttac accaccgatc ctgaagtggc
     7681 attcagcgac gttgattttg tcatggcgca catccgcgtc ggcaaatacc cgatgcgcga
     7741 actggatgaa aaaatcccgc tgcgccacgg cgttgttggt caggaaactt gcggacccgg
     7801 cggaatagcg tacggcatgc gttccattgg cggcgtcctg gaactggtgg attatatgga
     7861 aaaatattca ccaaatgcct ggatgctcaa ctactccaac ccggcagcaa ttgtcgcaga
     7921 agccacgcgt cgtctgcgcc cgaatgcgaa aatcctcaac atctgtgaca tgccaatcgg
     7981 tattgaaagc cggatggcgc aaattgttgg gatgcaagat cgcaaacaga tgcgcgtgcg
     8041 ctactacggc ctgaaccact ttggctggtg gacatcaatt gaagatttgc agggcaacga
     8101 cctgatgccc cagctgcggc aatatgtctc taagcacggt tatgttccac cgcagcaaga
     8161 tacacatact gaagcgagct ggaacgacac ctatgcaaaa gcgcgggatg tccaggcact
     8221 ggacccggat acattgccga acacctatct gaaatattat ctcttcccgg attatgttgt
     8281 tcagcattcc aaccctgaac atacccgcgc gaatgaggtg aatggaacat cgcgagaaac
     8341 aggttttcga tgcttgccgc gccattacag cggcaggaaa ttcagcggcg gccaagctgg
     8401 agattgacga acatgcgtca tacatcgtcg atctggcggc ggcaattgcc ttcaacactc
     8461 aggagcggat gttgctgatt gtgcctaaca acggggcaat ccataacttt gatgatgaag
     8521 cgatggtcga gatcccgtgt ctggtcgggc acaacggacc agaaccactg gtggtcggcg
     8581 atatcccgta gtttcagaaa gggttaatga gtcagcaagt ggcggtggaa aaactggtcg
     8641 tggacgcctg ggaacagcgt tcatatcagc acctgtggca ggcgattacg ttatcgaaaa
     8701 cggtaccgag cgcctcggtc gccaaagcta ttctggatga gttgctggag gccaacaaag
     8761 cgtactggcc agagttacgt taattgtgtg gactggcatc cgttgggtgc tggtccgtat
     8821 tctttagcac ggctgacggc gcataaccaa atttatccgg tgcgccgtaa aaccccgtcc
     8881 ttcagggcgg ggatataagg cgcggttttc cacctaacca ggtgtttgct gttgttcaat
     8941 gtattggcgg atgacggata ttggcgcacc tccgcagcta ttggcaaaat agccaggact
     9001 ccacaaaacg cctttgtagt aatacctgac tgcaatatct ggtcgatctc gtcgcagtaa
     9061 cctacccgat acgcctttga ggctgtttac cagactggat atcgccagtt tgggaggata
     9121 gttaattaac aaatggacgt gatctggttc gccatccatt taaaccagtt cagcttcaaa
     9181 atcagcacat acatttgaaa agtaagtgcg tagtttttct gtcgcgtcat agtcaaaaat
     9241 ctgacgtcgg tatttggtga caaagaccag gtgaacatgc atcaggaaaa cacaatgcct
     9301 tccacgccgg atatcggttt cttttttcac agaccaaagt atcatttggc ctgtgaaacg
     9361 actacaagca tttaaattcc agttaagacc cggtggtcaa caggagcgtg aaatgaggcg
     9421 cttcgcaggc gcatgtcgtt tcgttttcaa tcgtgctctg gcacgtcaga atgagaatca
     9481 tgagg
//
LOCUS       DADMHM010000153         9436 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.156, whole genome shotgun sequence.
ACCESSION   DADMHM010000153 DADMHM010000000
VERSION     DADMHM010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9436)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9436)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9436
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.156"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..381
                     /gene="kgtP"
                     /locus_tag="JN125_003146"
     CDS             <1..381
                     /gene="kgtP"
                     /locus_tag="JN125_003146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoglutarate permease"
                     /protein_id="HAY8872826.1"
                     /translation="GRRTSMLCFGSLAAIFTVPILSALQNVSSPYAAFGLVMCALLIV
                     SFYTSISGILKAEMFPAQVRALGVGLSYAVANAIFGGSAEYVALSLKSIGMETAFFWY
                     VTLMAVVAFLVSLMLHRKGKGMRL"
     gene            complement(378..722)
                     /locus_tag="JN125_003147"
     CDS             complement(378..722)
                     /locus_tag="JN125_003147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708437.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfiM family lipoprotein"
                     /protein_id="HAY8872827.1"
                     /translation="MFFGGHVLRILFVCSLLLLSGCSHMANDSWSGQDKAQHFIASAM
                     LSAAGNEYSQHQGMSRDRSAMFGLMFSVSLGASKELWDSRPEGSGWSWKDLAWDVAGA
                     STGYTVWQLTRH"
     gene            complement(747..2102)
                     /gene="pssA"
                     /locus_tag="JN125_003148"
     CDS             complement(747..2102)
                     /gene="pssA"
                     /locus_tag="JN125_003148"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HAY8872828.1"
                     /translation="MLSKFKRNKHQQHLAQLPKISQSVDDVDFFYAPADFRETLLEKI
                     ASAKQRICIVALYLEQDDGGKGILNALYEAKRQRPELDVRVLVDWHRAQRGRIGAAAS
                     NTNADWYCRMAQENSGVDVPVYGVPINTREALGVLHFKGFIIDDSVLYSGASLNDIYL
                     HQHDKYRYDRYHLIRNRKMSDIMFEWVTQNIMNGRGVNRLDDVNRPKSPEIKNDIRLF
                     RQELRDAAYHFQGDADNDQLSVTPLVGLGKSSLLNKTIFHLMPCAEQKLTICTPYFNL
                     PAILVRNIIQLLREGKKVEIIVGDKTANDFYIPEDEPFKIIGALPYLYEINLRLFLSR
                     LQYYVNTDQLVVRLWKDDDNTYHLKGMWVDDKWMLITGNNLNPRAWRLDLENAILIHD
                     PQLELAPQREKELELIREHTTIVKHYRDLQSIADYPVKVRKLIRRLRRIRIDRLISRI
                     L"
     gene            complement(2216..4876)
                     /gene="pat"
                     /locus_tag="JN125_003149"
     CDS             complement(2216..4876)
                     /gene="pat"
                     /locus_tag="JN125_003149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein lysine acetyltransferase"
                     /protein_id="HAY8872829.1"
                     /translation="MSQRGLEALLRPKSIAVIGASMKPNRAGYLMMRNLLAGGFNGPV
                     LPVTPAWKAVLGVLAWPDIASLPFTPDLAVLCTNASRNLALLEELGEKGCKTCIILSA
                     PASQHEDLRACALRHNMRLLGPNSLGLLAPWQGLNASFSPVPIKRGKLAFISQSAAVS
                     NTILDWAQQRKMGFSYFIALGDSLDIDVDELLDYLARDSKTSAILLYLEQLSDARRFV
                     SAARSASRNKPILVIKSGRSPAAQRLLNTTAGMDPAWDAAIQRAGLLRVQDTHELFSA
                     VETLSHMRPLRGDRLMIISNGAAPAALALDALWSRNGKLATLSEETCQKLRDALPEHV
                     AISNPLDLRDDASSEHYIKTLDILLHSQDFDALMVIHSPSAAAPATESAQVLIEAVKH
                     HPRSKYVSLLTNWCGEHSSQEARRLFSEAGLPTYRTPEGTITAFMHMVEYRRNQKQLR
                     ETPALPSNLTSNTAEAHLLLQQAIAEGATSLDTHEVQPILQAYGMNTLPTWIASDSTE
                     AVHIAEQIGYPVALKLRSPDIPHKSEVQGVMLYLRTANEVQQAANAIFDRVKMAWSQA
                     RIHGLLVQSMANRAGAQELRVVVGHDPVFGPLIMLGEGGVEWRPEDQAVVALPPLNMN
                     LARYLVIQGIKSKKIRARSALRPLDVAGLSQLLVQVSNLIVDCPEIQRLDIHPLLASG
                     SEFTALDVTLDISPFEGDNESRLAVRPYPHQLEEWVELKNGERCLFRPILPEDEPQLQ
                     QFISRVTKEDLYYRYFSEINEFTHEDLANMTQIDYDREMAFVAVRRIDQTEEILGVTR
                     AISDPDNIDAEFAVLVRSDLKGLGLGRRLMEKLITYTRDHGLQRLNGITMPNNRGMVA
                     LARKLGFNVDIQLEEGIVGLTLNLAQREES"
     gene            complement(4908..5606)
                     /locus_tag="JN125_003150"
     CDS             complement(4908..5606)
                     /locus_tag="JN125_003150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311476.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DTW domain-containing protein"
                     /protein_id="HAY8872830.1"
                     /translation="MTENAVLQLRTERIARATRPFLARGNRVRRCQRCLLPEKLCLCS
                     TITPAQAKSRFCLLMFDTEPMKPSNTGRLIADILPDTVAFQWSRTEPSQDLLDLVQNP
                     DYQPMVVFPASYADEQREVIFTPPAGKPPLFIMLDGTWPEARKMFRKSPYLDNLPVIS
                     VDLSRLSAYRLREAQAEGQYCTAEVAIALLDMAGDTGAAAGLGEHFTRFKTRYLAGKT
                     QHLGSITAEQLESV"
     gene            complement(5675..6094)
                     /gene="trxC"
                     /locus_tag="JN125_003151"
     CDS             complement(5675..6094)
                     /gene="trxC"
                     /locus_tag="JN125_003151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin TrxC"
                     /protein_id="HAY8872831.1"
                     /translation="MNTVCTHCQAINRIPDDRIEDAAKCGRCGHDLFDGEVINATGET
                     LDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRF
                     GIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNESL"
     gene            6301..7338
                     /locus_tag="JN125_003152"
     CDS             6301..7338
                     /locus_tag="JN125_003152"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA/rRNA methyltransferase"
                     /protein_id="HAY8872832.1"
                     /translation="MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRA
                     DGGRRPARDDKQSQPRDRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRR
                     QRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA
                     ELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSC
                     AHFGVKGVVVQDAALLESGAAIRTAEGSAEHVQPITGDNIVNVLDDFRQAGYTVVTTS
                     SEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGV
                     LLGEWWRQNKA"
     gene            complement(7386..8075)
                     /gene="ung"
                     /locus_tag="JN125_003153"
     CDS             complement(7386..8075)
                     /gene="ung"
                     /locus_tag="JN125_003153"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HAY8872833.1"
                     /translation="MANELTWHDVLAEEKQQPYFLNTLQTVASERQSGVTIYPPQKDV
                     FNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAIPPSLLNMYKELENTIPG
                     FTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVV
                     FLLWGSHAQKKGAIIDKQRHHVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQRGETPI
                     DWMPVLPAESE"
     gene            8381..8764
                     /gene="grcA"
                     /locus_tag="JN125_003154"
     CDS             8381..8764
                     /gene="grcA"
                     /locus_tag="JN125_003154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autonomous glycyl radical cofactor GrcA"
                     /protein_id="HAY8872834.1"
                     /translation="MITGIQITKAANDDLLNSFWLLDSEKGEARCIVAKAGYAEDEVV
                     AVSKLGDIEYREVPVEVKPEVRVEGGQHLNVNVLRRETLEDAVKHPEKYPQLTIRVSG
                     YAVRFNSLTPEQQRDVIARTFTESL"
     gene            complement(8820..9407)
                     /gene="eamB"
                     /locus_tag="JN125_003155"
     CDS             complement(8820..9407)
                     /gene="eamB"
                     /locus_tag="JN125_003155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine/O-acetylserine transporter"
                     /protein_id="HAY8872835.1"
                     /translation="MTPTLLSAFWTYTLITAMTPGPNNILALSSATSHGFRQSTRVLA
                     GMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATSPTKEDGLQA
                     KPISFWASFALQFVNVKIILYGVTALSTFVLPQTQALSWVVGVSVLLAMIGTFGNVCW
                     ALAGHLFQRLFRQYGRQLNIVLALLLVYCAVRIFY"
BASE COUNT         2351 a         2423 c         2448 g         2214 t
ORIGIN      
        1 ggtcgccgta cctcaatgtt atgtttcggt tcgctggcag ccatttttac cgttcctatt
       61 ctctcagcat tgcaaaacgt ttcctcgcct tatgccgctt ttggtctggt gatgtgtgcc
      121 ctgctgatag tgagttttta tacatcaatc agtggaatac tgaaggctga gatgttcccg
      181 gcacaggttc gcgcattagg cgttggtctg tcatatgcgg tcgctaatgc tatatttggt
      241 ggttcggcgg agtacgtagc gttgtcgctg aaatcaatag gaatggaaac tgccttcttc
      301 tggtatgtga ccttgatggc cgtggtggcg tttctggttt ctttgatgct acatcgcaaa
      361 gggaagggga tgcgtcttta gtgacgggtc agttgccaga cggtatagcc ggtgcttgca
      421 ccggcgacat cccaggccaa atccttccag ctccagccgc tcccttcggg gcggctatcc
      481 caaagctctt ttgacgcccc caaactgaca gagaacatca atccaaacat ggcactgcga
      541 tcccggctca tcccctgatg ctgtgaatat tcatttccgg cggcggaaag catcgccgag
      601 gcgataaagt gttgagcttt atcctgcccg ctccagctat cgttagccat atggctgcat
      661 ccagaaagta acaatagcga acagacaaaa agaatacgca aaacgtggcc tccaaaaaac
      721 aaaccccgta caggacgggg ttgtgattac aggatgcggc taattaatcg gtcgatgcgg
      781 atacggcgca aacggcggat gagtttacga accttcaccg gataatcggc aatactttgc
      841 agatcgcgat agtgcttaac gatggtggta tgctcgcgga tcagctccag ttctttctct
      901 cgctgcggcg caagctccag ttgtggatcg tggatcaaaa tggcgttttc cagatccaga
      961 cgccaggcgc gcgggttcag gttattaccg gtgatcaaca tccacttatc atcaacccac
     1021 atccctttca ggtgataggt gttgtcgtca tctttccata accgaaccac tagctggtca
     1081 gtattgacgt aatactgcaa acggctcagg aaaagacgca gattgatctc atagagataa
     1141 ggcaatgcgc caattatctt gaaaggttca tcttccggaa tgtagaagtc gttcgcggtt
     1201 ttatcaccaa caataatttc gacctttttc ccttcgcgca gcaactggat aatattgcgc
     1261 acaaggattg ctggcaggtt gaagtatggc gtacagatgg ttagtttctg ctcggcacaa
     1321 ggcataagat ggaaaatggt cttgttcaac agactcgatt tccccagccc cactagcggc
     1381 gttacggaaa gctgatcgtt gtcggcatcg ccctggaaat gataagcggc atcacgcagc
     1441 tcctggcgga acagacgaat atcgttcttg atttccgggc tttttggccg attaacatca
     1501 tccagacgat taacgccgcg gccattcata atattctgtg taacccattc aaacataatg
     1561 tctgacatct tacggttacg gataagatga taacggtcgt agcgatattt atcgtgctga
     1621 tgcaggtaaa tatcgttcag gctggcaccg ctataaagta cgctatcgtc gatgataaag
     1681 cctttaaagt gcagaacacc aagggcttca cgggtattga ttggaacgcc ataaaccgga
     1741 acatctacgc ccgaattttc ctgcgccatg cggcagtacc agtcagcgtt agtgttagat
     1801 gccgcagcgc caatgcgtcc acgttgtgca cgatgccagt cgaccagcac ccgcacatcc
     1861 agttccggac gctgcctttt agcttcatac aacgcgttca gaatgccttt gccaccgtca
     1921 tcctgttcga gatacagggc gacaatgcaa atgcgctgct tcgcgctggc tattttttcc
     1981 agcagcgtct cccggaagtc ggcgggagcg taaaagaaat cgacatcatc aactgattga
     2041 gaaatcttgg gtagttgggc aaggtgttgt tgatgtttat tacgcttaaa ttttgacaac
     2101 atcacagtgc atttcttctc tgttcattga agggtcctct gtgcaatgca gacgacataa
     2161 gcgggcaata ataacaccag tcccgattaa gtggtcaaca tttccagtac cttactcatg
     2221 attcctcgcg ttgggcaaga tttagcgtaa gcccaacgat cccctcttcg agctggatat
     2281 caacgttaaa cccgagcttg cgggctagcg ccaccatgcc acgattgttt ggcatcgtaa
     2341 taccattcag acgttgtagt ccgtgatctc gcgtataggt aatcaacttt tccattaagc
     2401 gtcgacctaa gcctaaccct ttgagatccg agcgaaccag cacagcaaat tcggcatcga
     2461 tgttatcagg atcggaaatc gcacgcgtga cgccgaggat ctcttccgtt tgatcaatac
     2521 gtcgtaccgc tacaaacgcc atttcccgat cgtagtcgat ctgtgtcatg ttggctaaat
     2581 cttcatgggt aaattcgttg atctcgctaa agtagcggta ataaagatct tctttggtga
     2641 ctcgcgaaat gaattgctga agttgtggct catcttctgg caaaatcggg cggaacaagc
     2701 agcgttcacc gtttttcaat tctacccatt cttccagctg atgcggataa gggcgcactg
     2761 ccagccgact ctcgttatcg ccttcaaacg gcgagatatc cagcgtgaca tccagcgcgg
     2821 taaattcact gccagaagcc agcaaaggat gaatatccag acgctgaatt tccgggcaat
     2881 cgacaatcaa gttggaaacc tgcaccagaa gctggctcaa gcctgcaaca tccaatgggc
     2941 gtagcgcact gcgcgcacga atctttttac ttttgatccc ctgaataacc agatagcggg
     3001 ccaggttcat gttcagcggc ggcagtgcga cgacggcttg atcttcagga cgccactcca
     3061 caccgccttc acccagcatg atcaacggcc cgaaaaccgg atcgtgccca accacaaccc
     3121 gcaactcctg agcgccagca cggttagcca tactttgcac caacaggccg tggatccgcg
     3181 cctgcgacca ggccattttt acgcgatcga aaatggcgtt tgccgcttgc tggacttcat
     3241 tggctgtacg caagtacagc atgacgccct gaacttccga tttatgtgga atatccggcg
     3301 aacgcaattt cagcgccacc ggataaccaa tctgttcggc aatatgcacc gcttcggtgc
     3361 tatcgctggc aatccaggta gggagcgtgt tcatgccata cgcttgcagg atgggctgaa
     3421 cttcatgggt atcgagcgac gtagcccctt cggcaatcgc ctgttgcaac agaagatgcg
     3481 cttctgcggt attggaagtc agattgctgg gcaacgccgg cgtttcgcgt agttgcttct
     3541 gattacgccg gtactccacc atatgcataa aagcagtgat ggttccttcc ggggtacggt
     3601 aggtcggcag cccggcttcg ctgaataaac gtcgtgcctc ttgcgaggag tgctcgccgc
     3661 accagttcgt cagcaaagag acatatttgc tgcggggatg atgctttacc gcttcaatta
     3721 atacttgcgc gctttctgtt gcgggagcag cggcgctggg cgaatgaata accatcagcg
     3781 cgtcaaaatc ctggctgtgg agcagaatat ccagcgtttt aatatagtgc tcactgctgg
     3841 cgtcatcgcg tagatcgagc gggttagata ttgccacatg ttctggcagt gcatcgcgca
     3901 gtttctggca ggtttcttcg cttagcgttg ccagcttgcc attgcgtgac cataaggcat
     3961 ccagcgccag cgcggcaggc gcagcaccgt tgctgataat catcagccgg tcgccacgta
     4021 gcgggcgcat atggctaagg gtttccaccg ccgaaaacag ctcgtgggtg tcctgtaccc
     4081 gcaacaaacc ggcacgctga atagccgcat cccatgccgg gtccattcct gccgtggtgt
     4141 tgagcagtcg ctgtgccgcc gggctacgtc cgcttttaat caccagaatc ggtttattac
     4201 gcgaggcact acgggccgcc gaaacaaagc gtcgcgcgtc gcttaactgt tcgagataga
     4261 gcaggatggc gctggtttta ctgtcgcgtg ccagatagtc aagcaattca tcaacgtcga
     4321 tatccaggct gtcgccgagc gcaataaagt aggaaaagcc catcttacgc tgttgcgccc
     4381 agtcgaggat ggtgttggag acggcagccg attgcgaaat aaacgccagc ttgccgcgtt
     4441 taatcggcac aggcgaaaag ctggcattca gaccttgcca gggagccagt aaacccagac
     4501 tgtttggtcc aagcaggcgc atgttatggc gcagggcgca ggcgcggaga tcttcgtgtt
     4561 gcgatgccgg ggcggaaaga ataatgcagg ttttacagcc tttctcgccg agctcttcca
     4621 gaagagcaag attacggctg gcattggtac ataaaaccgc aaggtcgggt gtaaagggca
     4681 agctggcaat atccggccag gccaacacac ccaacaccgc tttccaggct ggcgtcaccg
     4741 ggagtaccgg tccgttaaag cctcccgcca gcaggttacg catcatcagg taacctgcgc
     4801 gattgggttt catcgacgcg ccaattaccg ctatcgattt tggtcgcagt agtgcttcca
     4861 gtcctcgctg actcataccg gtctcccgca gaagtgaccg aatgatttta aacgctttct
     4921 aactgttctg ctgtgatgct acccagatgt tgcgtttttc ctgccagata gcgtgtttta
     4981 aagcgggtaa aatgctcgcc taaccctgct gccgccccgg tatcgccggc catatctaac
     5041 agtgcgatgg ctacctcggc agtacaatat tggccttcag cctgggcttc acgcaggcga
     5101 taggcagaaa gccgggaaag atcgacggaa atgacgggaa gattatccag atacggactt
     5161 ttacgaaaca tcttgcgagc ttccggccag gtaccatcga gcatgataaa cagcggtggc
     5221 ttaccggcag gtggtgtgaa gatcacttcc cgttgctcat cagcatacga ggcgggaaag
     5281 accaccattg gctgataatc cgggttttgt accagatcca gcaaatcctg cgagggttcg
     5341 gtacgcgacc attgaaacgc aacggtatca ggcaaaatat cagcaatcag acgcccggta
     5401 ttactgggct tcattggctc ggtgtcgaac atcagcaaac agaagcgact ttttgcttgt
     5461 gctggggtaa ttgtcgaaca gagacataat ttctctggca aaagacagcg ttggcagcga
     5521 cgaacgcgat taccgcgggc aagaaaagga cgtgttgcgc gcgcaatacg ctcggtgcgt
     5581 aactggagaa cagcgttttc ggtcataaga gagcgtcgaa aaaacgccat tgtcgcagag
     5641 gagaaaacgg ggcacaagat gcgccccggt aagattaaag agattcgttc agccagctat
     5701 cgaacggagc tttcggtact gcgccattaa gcatgtcgac aacctgaccg tttttgaaaa
     5761 tcatgatcgt cggtatacta cgaattccaa agcgactgct caattcacgt tcagcttcgg
     5821 tattcacttt cacaaagcgc actttaccgc tacgctcttg cgcgacatct tcaaaaattg
     5881 gtgcgaaatt acggcagggg ccgcaccacg gtgcccagaa gtcgatcacc acaggtagat
     5941 catccttcag caatttgtcg agtgtttcac cggtcgcatt aatcacctct ccgtcaaaca
     6001 agtcgtgacc gcagcgtccg cattttgccg catcttcgat ccgatcgtcg ggaatgcgat
     6061 tgatggcctg acaatgggta caaacggtat tcataactaa cctcgggatg agtaaggaga
     6121 cttatcggca acgacgccgg tatgtttcta atatgttaca tattatcggg gacattgttc
     6181 cagacaacaa tctgttttat tcaataggta tgatagtcgc aggctttggt acgaaatcat
     6241 ggcgaaccgc gcggacttcg ggtaatctgc gcgcttcgcg cagcgctggt ggagaaaagc
     6301 atgaacgatg aaatgaaagg taaaagcggc aaggtcaaag tgatgtatgt ccgcagtgat
     6361 gatgattctg ataaacgtac ccacaacccg cgtaccggga aagggggcgg gcgtccagga
     6421 aaatctcgtg ctgacggtgg ccgtcgcccc gcccgcgatg acaaacagag tcagccccgt
     6481 gaccgcaagt gggaagattc gccgtggcgc acggtttccc gcgcgccggg tgatgagacg
     6541 ccggaaaagg ccgatcacgg tggcatcagt ggtaaaagtt ttattgatcc ggaagtgttg
     6601 cgtcgtcagc gtgcggaaga aacccgcgtc tacggcgaaa acgcctgtca ggcactgttc
     6661 cagagccgtc cggaagcaat tgttcgcgcc tggtttatcc agagcgtaac gccacgtttt
     6721 aaagaagcct tgcgctggat ggcggcaaac cgcaaagcgt accatgtggt ggatgaagct
     6781 gaattgacaa aagcgtcagg cacggaacat cacggcggcg tttgcttcct gatcaaaaag
     6841 cgtaacggta caaccgtgca gcagtgggta agccaggcag gcgcgcagga ttgcgttctg
     6901 gcactggaaa acgaatctaa cccgcataac ctgggtggca tgatgcgcag ctgcgcgcac
     6961 ttcggcgtga aaggtgtcgt ggtgcaggat gcggcactgc tggagtcggg ggcggctatc
     7021 cgtaccgcag aaggcagcgc agagcacgtt cagccgatta ctggcgacaa cattgttaac
     7081 gtgctggatg atttccgtca ggcaggttac accgtagtga ccacttccag cgagcagggt
     7141 aaaccgctgt tcaaaactag tctgccagcg aaaatggtac tggtgctggg tcaggaatat
     7201 gaagggttac cggatgccgc acgcgatccg aacgatctgc gcgtgaagat tgacggtacg
     7261 ggcaacgttg ccgggctgaa tatctctgtc gcaaccggcg ttttgcttgg tgaatggtgg
     7321 cgtcagaata aagcctgata aatcagccgg gtggcaactc tgccatccgg catttccccg
     7381 caaatttact cactctctgc cggtaatact ggcatccagt caatcggcgt ctcgccacgt
     7441 tgttccagcc actgatttgc cagcacaaaa tggttgcagc caaagaatcc acgatgcgcc
     7501 gaaagcggcg acggatgcgg tgctttcagt acatgatggc gttgcttatc tataatcgcc
     7561 cctttctttt gcgcatgtga tccccacaac aaaaacacca cgccttcgcg gtgctggtta
     7621 atcaggctga tgactttatc agtaaacgtc tcccaaccga ggctggcgtg ggaatgcgcc
     7681 tgacctgcgc gaaccgtcaa cacagtattg agcaggagaa cgccctgacg cgcccagctt
     7741 tcgagatagc catgattagg gcgggtgaag cccggaatag tattttccag ctctttatac
     7801 atattcaata atgacggagg aatggcaatg ccgggacgaa cggaaaatgc cagaccatgc
     7861 gcctgtcccg gtccgtgata aggatcctgg ccgagaatca ccactttaac gtcacccaac
     7921 tcggtaaagc ggaacgcgtt aaagacatct ttttgtggtg gatagatagt gacgccggac
     7981 tgccgctcgc tggcgacggt ctgaagggta ttaagaaaat aaggttgttg cttctcttca
     8041 gccagcacgt catgccaggt taattcgtta gccatctcgc tctcctgcga atcttcaatc
     8101 cgcctagctt aactgcttct ttctacagaa caaaatcatg ctcatttttt atgacttaaa
     8161 cgagtgcaaa aaaatgtaaa ttggtaaaat ttcacacccg cataagttga tgtaaaacaa
     8221 taaaatccat ttacgaccac aatcgatgtg tggtttttat tgatttaaat caaagaatca
     8281 agggtggttg aggagtatat atacactcaa gcaacaatgg ttttaccaat tggccgcgac
     8341 aggctgaaca aatcaaataa ttttgccggg gaggcatcac atgattacag gtatccagat
     8401 tactaaagcc gctaacgacg atctgctgaa ctctttctgg ctgctggaca gcgaaaaagg
     8461 cgaagcacgt tgcatcgttg caaaagcagg ttatgcagaa gatgaagtgg ttgcagtaag
     8521 caaactgggt gacattgaat accgtgaagt tccagtagaa gtgaaaccag aagttcgcgt
     8581 tgaaggtggt caacacctga acgttaacgt tctgcgtcgt gaaactctgg aagatgcagt
     8641 taagcatccg gaaaaatatc cgcagctgac catccgtgta tccggttatg cagttcgctt
     8701 taactctctg actccggaac agcagcgcga cgttatcgct cgtaccttta ctgaaagcct
     8761 gtaaggctta agtagcaagt tactaagcgg aagagggcga cctcttccgc tttttttcgt
     8821 taatagaaaa tgcgtaccgc gcaatagacc agcaacaggg caagcacgat atttaactgg
     8881 cgaccatact ggcgaaacaa tcgctgaaac agatgccccg ccagcgccca gcacacattg
     8941 ccaaacgtcc caatcatcgc cagcaaaacg ctgacgccaa ctacccagct tagcgcctgt
     9001 gtttgcggca gaacaaacgt cgacagtgcc gtaacaccgt acaaaatgat tttgacgttc
     9061 acaaactgca aagcaaagct ggcccaaaag ctgattggtt ttgcctgaag tccgtcttcc
     9121 tttgttgggc tggtggcgat tttccacgcc agccagacaa tatatgccgc ccccgcccaa
     9181 ctcaaaaggt gtaccgctgc cgggtcaatc actgccagtg aaaatgaaat gcccgcacac
     9241 agtaacatca caatcaaaaa tcccagactc atccctgcca gcacgcgggt actttgacga
     9301 aatccatgcg acgtagcaga gctaagggcg agaatattgt tcggtcctgg cgtcatagcg
     9361 gtaatcaggg tgtaagtcca aaaagcactt aaaagggtcg gtgtcacttg ttatctcctc
     9421 tgttttggta gacagt
//
LOCUS       DADMHM010000154         9360 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.157, whole genome shotgun sequence.
ACCESSION   DADMHM010000154 DADMHM010000000
VERSION     DADMHM010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9360)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9360)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9360
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.157"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            126..455
                     /locus_tag="JN125_003156"
     CDS             126..455
                     /locus_tag="JN125_003156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311560.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF883 domain-containing protein"
                     /protein_id="HAY8872836.1"
                     /translation="MFNRPNRNDVDDGVQDIQNDVNQLADSLESVLKSWGSDAKGEAE
                     AARSKAQALLKETRARMHGRTRVQQAARDAVGCADSFVRERPWCSVGTAAAVGIFIGA
                     LLSMRKS"
     gene            703..948
                     /gene="nrdH"
                     /locus_tag="JN125_003157"
     CDS             703..948
                     /gene="nrdH"
                     /locus_tag="JN125_003157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin-like protein NrdH"
                     /protein_id="HAY8872837.1"
                     /translation="MRITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPETAEALR
                     AQGFRQLPVVIAGDLSWSGFRPDMINRLHPAPHAASA"
     gene            945..1355
                     /gene="nrdI"
                     /locus_tag="JN125_003158"
     CDS             945..1355
                     /gene="nrdI"
                     /locus_tag="JN125_003158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class Ib ribonucleoside-diphosphate reductase
                     assembly flavoprotein NrdI"
                     /protein_id="HAY8872838.1"
                     /translation="MSQLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYIL
                     IVPSYGGGGTAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCG
                     VPWLYRFELMGTQSDIENVRKGVTEFWQRQPQNA"
     gene            1328..3472
                     /gene="nrdE"
                     /locus_tag="JN125_003159"
     CDS             1328..3472
                     /gene="nrdE"
                     /locus_tag="JN125_003159"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1b ribonucleoside-diphosphate reductase
                     subunit alpha"
                     /protein_id="HAY8872839.1"
                     /translation="MATTTAECLTQETMDYHALNAMLNLYDSAGRIQFDKDRQAVDAF
                     MATHVRPNSVTFSSQQQRLNWLVNEGYYDESVLNRYSRDFVITLFAHAHTSGFRFQTF
                     LGAWKFYTSYTLKTFDGKRYLEDFADRVTMVALTLAQGDATLALQLTDEMLSGRFQPA
                     TPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAG
                     APIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKREN
                     ADEKIRIKTLSLGVVIPDITFHLAKENAQMALFSPYDVERVYGKPFADIAISEHYDEL
                     VADERIRKKYLNARDFFQRLAEIQFESGYPYIMYEDTVNRANPVAGRINMSNLCSEIL
                     QVNCASEYDENLDYARTGHDISCNLGSLNIAHTMDSPDFARTVETAVRGLTAVSDMSH
                     IRSVPSIEAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYAITWHALRT
                     SMLLARERGETFAGFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSGITLPTREMW
                     AQLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPA
                     PFMTNENLALYQDAYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIY
                     AWRKGIKTLYYIRLRQMALEGTEIEGCVSCAL"
     gene            3482..4441
                     /locus_tag="JN125_003160"
     CDS             3482..4441
                     /locus_tag="JN125_003160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase 2 subunit
                     beta"
                     /protein_id="HAY8872840.1"
                     /translation="MKLSRISAINWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPA
                     WQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHA
                     RSYSSIFSTLCQTKDVDAAYAWSEENAPLQRKAQIIQQHYRGDDPLKKKIASVFLESF
                     LFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREEL
                     KSFAFDLLLELYDNELQYTDELYAETPWADDVKAFLCYNANKALMNLGYEPLFPAEMA
                     EVNPAILAALSPNADENHDFFSGSGSSYVMGKAVETEDEDWNF"
     gene            4796..5998
                     /locus_tag="JN125_003161"
     CDS             4796..5998
                     /locus_tag="JN125_003161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline/glycine betaine ABC transporter
                     ATP-binding protein ProV"
                     /protein_id="HAY8872841.1"
                     /translation="MAIKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGV
                     KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELRE
                     VRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS
                     YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTI
                     VFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSA
                     KDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALT
                     QQQGLDAALIDAPLAVDAQTPLSELLSHVGQAPCAVPVVDEDQQYVGIISKGMLLRAL
                     DREGVNNG"
     gene            5991..7055
                     /gene="proW"
                     /locus_tag="JN125_003162"
     CDS             5991..7055
                     /gene="proW"
                     /locus_tag="JN125_003162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline ABC transporter
                     permease ProW"
                     /protein_id="HAY8872842.1"
                     /translation="MADQNNPWDTTPAADSAVQSADAWGTPATAPTDGGGADWLTSTP
                     APNVEHFNILDPFHKTLIPLDSWVTEGIDWVVTHFRPVFQGVRVPVDYILNGFQQLLL
                     GMPAPVAIIVFALIAWQISGVGMGVATLVSLIAIGAIGAWSQAMVTLALVLTALLFCI
                     VIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFA
                     LPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLAL
                     SMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIILDRLTQAVGRDSRSR
                     GNRRWYTTGPVGLLTRPFIK"
     gene            7113..8105
                     /gene="proX"
                     /locus_tag="JN125_003163"
     CDS             7113..8105
                     /gene="proX"
                     /locus_tag="JN125_003163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708493.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline ABC transporter
                     substrate-binding protein ProX"
                     /protein_id="HAY8872843.1"
                     /translation="MRHSVLFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQ
                     TLLVSRALEKLGYTVNKPSEVDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKK
                     FYREGVFVNGAAQGYLIDKKTADQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPG
                     WGCEGAINHQLAAYELTNTVTHNQGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNEL
                     KPGKDVVWLQVPFSALPGDKNADTKLPNGANYGFPVSTMHIVANKAWTEKNPAAAKLF
                     AIMQLPVADINAQNAIMHDGKASEGDIQGHVDGWIKAHQQQFDGWVNEALAAQK"
     gene            8397..>9360
                     /locus_tag="JN125_003164"
     CDS             8397..>9360
                     /locus_tag="JN125_003164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8872844.1"
                     /translation="MTKPNHELSPALIVLMSIATGLAVASNYYAQPLLDTIARNFSLS
                     ASSAGFIVTAAQLGYAAGLLFLVPLGDMFERRRLIVSMTLLAAGGMLITASSQSLAMM
                     ILGTALTGLFSVVAQILVPLAATLASPDKRGKVVGTIMSGLLLGILLARTVAGLLANL
                     GGWRTVFWVASVLMALMALALWRGLPQMKSETHLNYPQLLGSVFSMFISDKILRTRAL
                     LGCLTFANFSILWTSMAFLLAAPPFNYSDGVIGLFGLAGAAGALGARPAGGFADKGKS
                     HHTTTFGLLLLLLSWLAIWFGHTSVLALIIGILVLDLTVQGVHIT"
BASE COUNT         2220 a         2412 c         2414 g         2314 t
ORIGIN      
        1 gggcctacct tacctgattg cgcattcaca acgctttcag aaaagtccat aaagccgcga
       61 tgaacctcag ttaagaaaat tatggtctac actgaaaatt acatcgaatt ctaatggggg
      121 atcatatgtt taaccgaccg aaccgcaacg acgttgatga tggcgtgcag gatatccaga
      181 atgatgtcaa tcaattagct gacagcctcg aatctgtatt gaagtcctgg ggcagcgacg
      241 ccaaagggga agctgaagcc gcacgcagta aagctcaggc gttgctgaaa gaaaccaggg
      301 cgcgaatgca tggtcgtact cgcgtccagc aagccgcgcg cgatgccgtt ggctgcgcgg
      361 attcttttgt tcgtgaaaga ccctggtgta gcgtgggtac agcagctgcg gtaggtattt
      421 ttatcggcgc actgttaagc atgcgcaaat cgtagtgcaa aaatgataat aaatacgcgt
      481 ctttgacccc gaagcctgtc ttcggggttt ctttttgcct ggtgaatcac aaaaatcccc
      541 ctcccccgtc acgctcatat ccagggtaat ttcgatcact atttgctata tattgtgtag
      601 ttgaaacttt tttcaactac atctagtatc tctgtatcaa cagagagaca acccgacgcg
      661 tatcatcgcg ccgtatcttc attttaaacg gaaatacgaa tcatgcgcat aactatttat
      721 actcgtaacg attgcgttca gtgccacgcc accaaacggg cgatggaaaa ccgggggttt
      781 gattttgaaa tgattaatgt cgatcgcgtt cctgaaacag cggaagcgtt gcgtgctcag
      841 ggctttcgtc agttgccggt agtgattgct ggcgatctta gctggtctgg tttccgtccg
      901 gacatgatta accgtctgca tccagcgcca cacgcggcca gtgcatgagc cagctcgtct
      961 acttctccag cagctccgaa aacacgcagc gttttatcga acgtttaggt ctgcccgcgg
     1021 tgcgcatccc gctcaatgaa cgggaacgga ttcaggtaga cgagccttac atcctgatcg
     1081 tgccctctta cggcggcggc ggtacggctg gcgcggtgcc acgacaggta attcgctttt
     1141 taaacgacga gcacaaccgg gcgttgcttc gcggcgttat tgcttctggt aatcgcaact
     1201 ttggtgaggc gtatggccgc gccggagatg tgattgcccg gaaatgcggc gtgccgtggc
     1261 tgtaccgttt tgaactcatg ggtacgcaaa gcgatatcga aaacgttcgt aaaggagtaa
     1321 ccgaattttg gcaacgacaa ccgcagaatg cctgacgcag gaaacgatgg attaccacgc
     1381 gctgaatgcg atgcttaacc tctacgatag cgcaggtcgc attcagttcg ataaagaccg
     1441 ccaggccgtt gacgccttta tggcgacgca tgtgcgtccg aacagtgtga ccttcagtag
     1501 ccagcagcag cgcctgaact ggctggtcaa cgaaggttac tatgatgaaa gcgttcttaa
     1561 tcgctactct cgcgactttg tcattacgct gtttgcccac gcacacacca gcggttttcg
     1621 tttccagaca ttcctcgggg catggaagtt ttacaccagc tatacgttga agacattcga
     1681 cggtaaacgt tatctggaag attttgccga tcgagtcacg atggtggcgc tgacgctggc
     1741 acaaggcgat gcgacgctgg cgttgcaact gaccgatgaa atgctgtcag gacgctttca
     1801 gccagccacg ccgacattcc tcaactgcgg taagcagcag cgcggcgaac tggtttcctg
     1861 ttttctgctg cgtattgaag acaatatgga gtcgattggc cgggcggtaa attccgcact
     1921 gcaactgtcg aaacgcggcg gcggcgtggc atttttgctg tcgaatctgc gagaagcggg
     1981 cgcgccaatt aaacgtattg aaaatcaatc ttctggcgta attccggtga tgaaaatgct
     2041 ggaagacgca ttttcctatg ccaaccaact cggcgcgcgt cagggggcag gtgcagtcta
     2101 tttacatgct catcatcccg atattctgcg ttttctcgat acaaaacggg aaaatgccga
     2161 cgaaaaaatc cgcattaaaa cactgtcgct gggcgtggtg atcccggata tcactttcca
     2221 tctggcaaaa gagaatgcgc agatggcgct gttttcgccc tatgacgttg agcgagttta
     2281 tggcaagccg tttgccgata tcgccatcag tgaacactat gacgaactgg ttgccgatga
     2341 acgcatccgc aaaaaatacc tcaacgcccg tgatttcttc cagcggctgg cagaaatcca
     2401 gtttgagtcc ggctatccct acatcatgta tgaagacacg gtaaaccgtg ctaaccctgt
     2461 cgccgggcgc ataaatatga gtaatctctg ctcagagatt ttgcaggtca actgtgcctc
     2521 agagtatgac gagaatctcg actatgcccg cacaggccat gatatctcct gcaatttagg
     2581 ttcgttgaat attgcgcaca ccatggattc ccccgatttt gcccgcacgg tagagactgc
     2641 cgtgcgcggt ttaacggcgg tgtcagatat gagtcatatc cgcagcgtgc cgtccatcga
     2701 agccggaaat gccgcctcac acgccatcgg actggggcag atgaatttac acggctatct
     2761 ggcgcgagaa ggcatcgctt atggttcgcc ggaagcactg gatttcacca atctctattt
     2821 ctatgccatc acctggcacg cactgcgtac ctcgatgttg ctggcgcgcg aacgcggtga
     2881 aaccttcgcc gggttcaaac agtcacgtta tgccagtggt gaatatttta gccaatatct
     2941 gcaaggtaac tggcagccga aaacggcgaa agttggcgaa ctgtttgccc gcagcggtat
     3001 tacgttacct acccgtgaga tgtgggcgca actgcgcgac gacgtgatgc gctacggcat
     3061 ttataaccag aatcttcagg cggtgccgcc aaccggttct atctcttata tcaaccatgc
     3121 tacgtcgagt attcatccga ttgtggcgaa agtagagata cgcaaagagg gcaaaacagg
     3181 acgcgtttac taccctgccc cgtttatgac taacgagaat ctggcgctgt atcaggatgc
     3241 ttacgaaatc ggcgcagaaa agatcatcga cacctacgcc gaagcgactc gccatgtcga
     3301 tcaggggctg tcgctgacgc tgtttttccc cgataccgcc accactcgcg atatcaacaa
     3361 agcgcagatt tacgcctggc gcaagggtat caaaacgctc tattacattc gcctgcgtca
     3421 gatggcgctg gaaggcactg aaattgaagg ctgcgtctcc tgtgcacttt aaggaatatc
     3481 tatgaaactc tcacgtatca gcgccatcaa ctggaacaag atatctgacg ataaagatct
     3541 ggaggtgtgg aatcgcctga ccagcaattt ctggctacca gaaaaggtgc cgctgtcgaa
     3601 cgatattcct gcttggcaga cattaactgt cgtagaacaa caactgacga tgcgcgtttt
     3661 tactggcctg acgctgctcg acacgctgca aaatgttatc ggcgcgcctt cgctgatgcc
     3721 cgatgcactc acgcctcatg aagaagcggt attatcgaat atcagcttta tggaagcggt
     3781 tcatgcccgc tcttacagtt cgattttctc gacgctgtgt cagaccaaag atgtcgatgc
     3841 cgcctacgcc tggagtgaag aaaacgcacc gttgcagcga aaagctcaga ttattcagca
     3901 acattatcgc ggtgatgatc cgctgaaaaa gaaaatcgcc agtgtgtttc ttgaatcttt
     3961 tttgttctat tccggtttct ggctgccgat gtatttttcc agccgcggaa agctgaccaa
     4021 taccgcagat ctgatccgtc tgattatccg cgatgaagca gtccacggtt actacatagg
     4081 ctataaatat cagaaaaaca tggaaaagat atctctggga caacgtgaag agttgaagag
     4141 tttcgccttc gatttgttgc tggaactcta cgacaacgag ttgcaataca ccgatgagct
     4201 gtacgccgaa accccgtggg ctgacgatgt gaaagcgttt ctctgttaca acgccaataa
     4261 ggctttgatg aatctgggct acgaaccgtt atttcccgca gaaatggcgg aagtgaatcc
     4321 ggcaatcctc gccgcgcttt cgccgaatgc cgatgaaaat cacgatttct tttccggttc
     4381 aggctcctct tatgtgatgg ggaaagcggt tgaaacagaa gatgaagact ggaatttctg
     4441 agggtgttat tttcaaaaat atcactaccc gcagcaggga aataattccc gccaaatagc
     4501 tttttatcac gcaaatattc tgtagtgatc tacactgaga ctctgttgca ttattcgcct
     4561 gaaactacaa tattcaggcg ttttttcgct atctatgaca aaaaatatca acttttctcg
     4621 atttgctctc agcccttata tcacgggaaa ttccggcgat ttgctcgcat caatattcat
     4681 gccacatttg ccctcagggg ttgcctcaga ttctcagtat gttagggtag aaaaaagtga
     4741 ctatttccat tgggtaatat atcgacataa acaaataaag gaatctttct attgcatggc
     4801 aattaaatta gaaattaaaa atctttataa aatatttggc gagcatccac agcgagcgtt
     4861 caaatatatc gaacaaggac tttcgaaaga acaaattctg gaaaaaactg ggctatcgct
     4921 tggcgtaaaa gacgccagtc tggccattga agaaggcgag atatttgtca tcatgggatt
     4981 atccggctcg ggtaaatcca caatggtacg ccttctcaat cgcctgattg aacccacccg
     5041 cgggcaagtg ctgattgatg gtgtggatat tgccaaaata tccgatgccg aactccgtga
     5101 ggtgcgcaga aaaaagattg cgatggtctt ccagtccttt gccttaatgc cgcatatgac
     5161 cgtgctggac aatactgcgt tcggtatgga attggccgga attaatgccg aagaacgccg
     5221 ggaaaaagcc cttgatgcac tgcgtcaggt cgggctggaa aattatgccc acagctaccc
     5281 ggatgaactc tctggcggga tgcgtcaacg tgtgggatta gcccgcgcgt tagcgattaa
     5341 tccggatata ttattaatgg acgaagcctt ctcggcgctc gatccattaa ttcgcaccga
     5401 gatgcaggat gagctggtaa aattacaggc gaaacatcag cgcaccattg tctttatttc
     5461 ccacgatctc gatgaagcta tgcgtattgg cgaccgaatt gccattatgc aaaatggtga
     5521 agtggtacag gtcggcacac cggatgaaat tctcaataat ccggcgaatg attatgtccg
     5581 taccttcttc cgtggtgttg atattagtca ggtattcagt gcgaaagata ttgcccgccg
     5641 gacaccgaat ggcttaattc gtaaaacccc tggcttcggc ccacgttcgg cactgaaatt
     5701 attgcaggat gaagatcgcg aatatggcta cgttatcgaa cgcggtaata agtttgtcgg
     5761 cgcagtttcc atcgattcgc ttaaaaccgc gttaacgcag cagcaaggtc ttgatgcggc
     5821 gctgattgat gcgccgttag cagtcgatgc acaaacgcct cttagcgagt tgctctctca
     5881 tgtcggacag gcaccctgtg cggtgcccgt ggtcgacgag gaccaacagt atgtcggcat
     5941 catttcgaaa ggaatgctgc tgcgcgcttt agatcgtgag ggggtaaata atggctgatc
     6001 aaaataatcc gtgggatacc acgccagcgg cggacagtgc cgtgcaatcc gcagacgcct
     6061 ggggtacacc ggcgactgca ccgactgacg gcggtggtgc tgactggctg accagtacgc
     6121 ctgcgccaaa cgtcgagcat tttaatattc tcgatccgtt ccataaaacg ctgatcccgc
     6181 tcgacagttg ggtcactgaa gggatcgact gggttgttac ccatttccgt cccgtcttcc
     6241 agggcgtgcg cgttccggtt gattatatcc tcaacggttt ccagcaattg ctgctgggta
     6301 tgcccgcacc ggtggcgatt atcgttttcg ctctcatcgc ctggcagatt tccggggtcg
     6361 gaatgggcgt ggcgacgctg gtttcgctga ttgccatcgg cgcaatcggt gcctggtcgc
     6421 aggccatggt taccctggcg ctggtgttaa ccgccctgct gttctgtatc gtcattggtt
     6481 tgccgctggg gatctggctg gcgagaagtc cgcgagcggc gaaaattatt cgtccactgc
     6541 ttgatgccat gcagaccacg ccagcgtttg tttatctggt gccaatcgtc atgctatttg
     6601 gtatcggtaa cgtgccgggc gtggtggtga cgatcatctt tgctctgccg ccgattatcc
     6661 gtctgaccat tctggggatt aaccaggttc cggcggatct gattgaagcc tcgcgctcat
     6721 tcggtgccag cccgcgccag atgctgttca aagttcagtt accgctggcg atgccgacca
     6781 ttatggcggg cgttaaccag acgctgatgc tggccctttc tatggtggtc attgcctcga
     6841 tgattgccgt cggcgggctg ggtcagatgg tacttcgcgg tatcggtcgt ctggatatgg
     6901 ggcttgccac cgttggcggc gtcgggattg tgatcctcgc cattatcctc gatcgcctga
     6961 cgcaggccgt tgggcgcgac tcacgcagtc gcggcaaccg tcgctggtac accactggcc
     7021 ctgttggtct gctgacccgc ccattcatta agtaactctg cacttgcccg gtgacgccgg
     7081 gcattatcac cctgccaaaa aaaggaataa caatgcgaca tagcgtactt tttgcgacag
     7141 cgtttgccac gcttatctct acacaaactt ttgctgccga tctgccgggc aaaggtatta
     7201 ctgttaatcc agttcaaagt accatcaccg aagaaacctt ccagacgctg ctggtcagcc
     7261 gtgcgctgga gaaattaggc tataccgtca acaaacccag cgaagtagat tacaacgttg
     7321 gctacacctc gcttgcttcc ggcgatgcaa ccttcaccgc cgtgaactgg acgccactgc
     7381 atgacaacat gtacgaagct gccggtggcg ataagaaatt ttatcgtgaa ggggtatttg
     7441 ttaacggcgc ggcacagggt tacctgatcg ataagaaaac cgccgaccag tacaaaatca
     7501 ccaacatcgc acaactgaaa gatccgaaga tcgccaaact gttcgatacc aacggcgacg
     7561 gtaaagcgga tttaaccggt tgtaaccctg gctggggctg cgaaggtgcg atcaaccacc
     7621 agcttgccgc gtatgaactg accaacaccg tgacgcataa tcaggggaac tacgcagcga
     7681 tgatggccga caccatcagt cgctacaaag agggcaaacc ggtgttttat tacacctgga
     7741 cgccgtactg ggtgagtaat gagctgaagc cagggaaaga tgtggtctgg ttgcaggtgc
     7801 cgttctccgc actgccgggc gataaaaatg ccgataccaa actgccgaat ggcgcgaatt
     7861 acggcttccc ggtcagcacc atgcatatcg ttgccaacaa agcctggacc gagaaaaatc
     7921 cggcggcagc caaactgttt gccattatgc agttgccagt ggccgatatt aacgcccaga
     7981 acgccattat gcatgacggc aaagcctcag aaggcgatat tcagggccac gttgatggct
     8041 ggatcaaagc ccaccagcag cagttcgatg gctgggtgaa tgaggcgctg gcagcgcaga
     8101 agtaattttt attcaggcgg ataaggcgtt tttgcctcat ccgccgctct gtacacaatg
     8161 cctgatgcga cgctgacgcg tcttatcatg cctacaaaat acactcattc cgtatggcgg
     8221 ataaggcgtt ttcgccgcat ccgccgttct gtgcacaatg cctgatgcga cgctggcgcg
     8281 tcttatcatg cctacaaacc acatcgcaca tttcaacaag ctatctttca tcccatattc
     8341 atcaacatcc gctattattg atttccagct taatcatcac ctgatgaaca aaaataatga
     8401 ctaaacctaa tcatgagctt agcccggcgc tgatcgtgct gatgtctatc gccaccggtc
     8461 tggcggtagc cagtaactat tacgcccagc cattgctcga caccatcgcg cgtaactttt
     8521 ccctttccgc cagttcggca ggctttattg ttaccgccgc gcaattgggc tatgcagcag
     8581 gtctgctgtt tcttgttccc ctcggtgata tgtttgaacg ccgccgcctg attgtctcga
     8641 tgaccttact ggcggcaggc ggcatgttaa tcactgccag cagtcagtcg ctggcgatga
     8701 tgatcctcgg tacggcatta accggtttat tctctgtcgt ggcacaaatt ctggttccgc
     8761 tggcagcgac gctggcttca ccggacaaac gcggcaaagt ggttggcact attatgagcg
     8821 gtctgctgtt ggggatctta ctcgcacgga ccgttgccgg attgctggcg aatctcggcg
     8881 gctggcgcac cgtcttttgg gttgcctcgg tgttaatggc actgatggcg ctggcattat
     8941 ggcgtggtct gccacaaatg aaatcagaaa cccacctcaa ctacccacag ttgttaggtt
     9001 ccgttttcag catgtttatc agcgataaga tcctgcgcac ccgcgcattg ctgggctgcc
     9061 tgacctttgc caacttcagc attctctgga cctcaatggc ctttttgctt gccgctccac
     9121 cttttaacta cagcgatggt gtcattggtc tgtttggact tgcgggagct gccggagcgt
     9181 tgggcgctcg tccggcgggc ggttttgccg ataagggtaa atcgcaccac accacaactt
     9241 tcggtctgct gctgctatta ctttcatggc tggcgatctg gtttggtcac acttccgtac
     9301 tggcgctgat tatcggcatc ctggtgctgg atctcaccgt acagggcgtg catatcacta
//
LOCUS       DADMHM010000155         9299 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.158, whole genome shotgun sequence.
ACCESSION   DADMHM010000155 DADMHM010000000
VERSION     DADMHM010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9299)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9299)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9299
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.158"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            265..1800
                     /gene="gadC"
                     /locus_tag="JN125_003165"
     CDS             265..1800
                     /gene="gadC"
                     /locus_tag="JN125_003165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid resistance gamma-aminobutyrate antiporter
                     GadC"
                     /protein_id="HAY8872845.1"
                     /translation="MATSVQTGKAKQLTLLGFFAITASMVMAVYEYPTFATSGFSLVF
                     FLLLGGILWFIPVGLCAAEMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIG
                     FIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGF
                     FAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVE
                     ASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFT
                     VLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNK
                     NGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVL
                     VLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLV
                     VSFLVVLALPFILYAVHDRKGKANTGVTLEPINSQNAPKGHFFLHPRARSPHYIVMND
                     KKH"
     gene            1931..3250
                     /locus_tag="JN125_003166"
     CDS             1931..3250
                     /locus_tag="JN125_003166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="family 10 glycosylhydrolase"
                     /protein_id="HAY8872846.1"
                     /translation="MDICSRNKKLTIRRPAILVALALLLCSCKSTPPESMVTPPAGSK
                     PPATTQQSSQPMRGIWLATVSRLDWPPVSSVNISNPTSRARVQQQAMIDKLDHLQRLG
                     INTVFFQVKPDGTALWPSKILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWF
                     NPYRVSVNTKPGTIRELNSTLSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITS
                     IVAEVVSRYPVDGVQFDDYFYTESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLIT
                     KVSHTIKSIKPGVEFGVSPAGVWRNRSHDPLGSDTRGAAAYDESYADTRRWVEQGLLD
                     YIAPQIYWPFSRSAARYDVLAKWWADVVKPTRTRLYIGIAFYKVGEPSKIEPDWMING
                     GVPELKKQLDLNDAVPEISGTILFREDYLNKPQTQQAVSYLQSRWGS"
     gene            3622..5003
                     /gene="dosC"
                     /locus_tag="JN125_003167"
                     /pseudo
     CDS             3622..5003
                     /gene="dosC"
                     /locus_tag="JN125_003167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310122.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase DosC"
     gene            5028..7427
                     /gene="dosP"
                     /locus_tag="JN125_003168"
                     /gene_synonym="pdeO"
     CDS             5028..7427
                     /gene="dosP"
                     /locus_tag="JN125_003168"
                     /gene_synonym="pdeO"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416006.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-sensing cyclic-di-GMP phosphodiesterase"
                     /protein_id="HAY8872847.1"
                     /translation="MKLTDAENAADGIFFPALEQNMMGAVLINENDEVMFFNPAAEKL
                     WGYKREEVIGNNIDMLIPRDLRPAHPEYIRHNREGGKARVEGMSRELQLEKKDGSKIW
                     TRFALSKVSAEGKVYYLALVRDASVEMAQKEQTRQLIIAVDHLDRPVIVLDPERHIVQ
                     CNRAFTEMFGYCISEACGMQPDTLLNIPEFPADNRIRLQQLLWKTARDQDEFLLLTRT
                     GEKIWIKASISPVYDVLAHLQNLVMTFSDITEERQIRQLEGNILAAMCSSPPFHEMGE
                     IICRNIESVLNESHVSLFALRNGMPIHWASSSHGAEVQNAQSWSATIRQRDGAPAGIL
                     QIKTSSGAETSAFIERVADISQHMAALALEQEKSRQHIEQLIQFDPMTGLPNRNNLHN
                     YLDDLVDKAVSPVVYLIGVDHIQDVIDSLGYAWADQALLEVVNRFRGKLKPDQYLCRI
                     EGTQFVLVSLENDVSNITQIADELRNVVSKPIMIDDKPFPLTLSIGISYDVGKNRDYL
                     LSTAHNAIDYIRKNGGNGWQFFSPAMNEMVKERLVLGAALKEAISNNQLKLVYQPQIF
                     AETGELYGIEALARWHDPQHGHVPPSRFIPLAEEIGEIENIGRWVIAEACRQLAEWRS
                     QNIHIPALSVNLSALHFRSNQLPNQVSDAMHAWGIDGHQLTVEITESMMMEHDTEIFK
                     RIQILRDMGVGLSVDDFGTGFSGLSRLVSLPVTEIKIDKSFVDRCLTEKRILALLEAI
                     TSIGQSLNLTVVAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSSVLPLK
                     I"
     gene            7685..8266
                     /gene="ddpX"
                     /locus_tag="JN125_003169"
     CDS             7685..8266
                     /gene="ddpX"
                     /locus_tag="JN125_003169"
                     /EC_number="3.4.13.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine dipeptidase"
                     /protein_id="HAY8872848.1"
                     /translation="MLDTTELVDLAVIFPDLEIELKYACADNITGKAIYQQARCLLHK
                     DAITALAKSISIAQLSGLQLVIYDAYRPQQAQAMLWQACPDPQYVVDVTVGSNHSRGT
                     AIDLTLRDEHGNILNMGAGFDEMHERSHAYHPSVPPAAQRNRLLLNAIMTGGGFVGIS
                     SEWWHFELPQAASYPLLADQFTCFISPGTQHVS"
     gene            8280..>9299
                     /locus_tag="JN125_003170"
     CDS             8280..>9299
                     /locus_tag="JN125_003170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HAY8872849.1"
                     /translation="MKRSIPFRPTLLALVLATTFPVAHAAVPKDMLVIGKAADPQTLA
                     PAVTIDNNDWTVTYPSYQRLVQYKTDGDKGSTDVEGDLASSWKASDDQKEWTFTLKDN
                     AKFADGTPVTAEAVKLSFERLLKIGQGPAEAFPKDLKIDAPDEHTVKFTLSQPFAPFL
                     YTLANDGASIINPAVLKEHAADDARGFLAQNTAGSGPFMLKSWQKGQQLVLVPNPHYP
                     GNKPNFKRVSVKIIGESASRRLQLSRGDIDIADALPVDQLNALKQENKVNVAEYPSLR
                     VTYLYLNNSKAPLNQADLRRAISWSTDYQGMVNGILSGNGKQMRGPIPEGMWGYDATA
                     MQYNHD"
BASE COUNT         2415 a         2277 c         2262 g         2345 t
ORIGIN      
        1 ggactttgtt gaactgttgc tggaagacta caaagcctcc ctgaaatatc tcagcgatca
       61 cccgaaactg cagggtattg cccagcagaa cagctttaaa catacctgat aacgtttaac
      121 ggtaacggtg tcccgaaacg aacccgtttc gggacaattt ccaaagtctg ttcactggca
      181 ttagcaacgg aaaatattgt tctgaatacg cttcagaaca aaacaggtgc ggttccgaca
      241 ggaataccat tttaggggga taatatggct acatcagtac agacaggtaa agctaagcag
      301 ctcacattac tcggattctt tgccataacg gcatcgatgg taatggctgt ttatgaatac
      361 cctaccttcg caacatcggg cttttcatta gtcttcttcc tgctattagg cgggatttta
      421 tggtttattc ccgtgggact ttgtgctgcg gaaatggcca ccgtcgacgg ctgggaagaa
      481 ggtggtgtct tcgcctgggt atcaaatact ctggggccga gatggggatt tgcagcgatc
      541 tcatttggct atctgcaaat cgccattggt tttattccga tgctctattt cgtgttaggg
      601 gcactctcct acatcctgaa atggccagcg ctgaatgaag accccattac caaaactatt
      661 gcagcactca tcattctttg ggcgctggca ttaacgcagt ttggtggcac gaaatacacg
      721 gcgcgaattg ctaaagttgg cttcttcgcc ggtatcctgt tacctgcatt tattttgatc
      781 gcattagcgg ctatttatct gcactccggt gcccccgttg ctatcgaaat ggattcgaag
      841 accttcttcc ctgacttctc taaagtgggc acactggttg tatttgttgc cttcattttg
      901 agttatatgg gcgtagaagc ttccgcaact cacgtcaatg aaatgagcaa ccccgggcgc
      961 gactatccac tggctatgtt actgctgatg gtggcggcaa tctgcttaag ctctgttggc
     1021 ggtttatcta ttgcgatggt cattccgggt aatgaaatca acctctccgc aggggtaatg
     1081 caaaccttta ccgttctgat gtcccatgtg gcaccggaaa ttgagtggac ggttcgcgtg
     1141 atctccgcac tgctgttgct gggtgttctg gcggaaatcg cctcctggat tgttggtcct
     1201 tctcgcggga tgtatgtcac agcgcagaaa aacctgctgc cagcggcatt cgctaaaatg
     1261 aacaaaaatg gcgtaccggt aacgctggtc atttcgcagc tggtgattac ttctatcgcg
     1321 ttgatcatcc tcaccaatac cggtggcggt aacaacatgt ccttcctgat cgcactggcg
     1381 ctgacggtgg tgatttatct gtgtgcttat ttcatgctgt ttattggcta cattgtgttg
     1441 gttcttaaac atcctgactt aaaacgcaca tttaatatcc ctggtggtaa aggggtgaaa
     1501 ctggtcgtgg caattgtcgg tctgctgact tcaattatgg cgtttattgt ttccttcctg
     1561 ccgccggata acatccaggg tgactctacc gatatgtatg ttgaattact ggtcgttagt
     1621 ttcctggtgg tacttgccct gccctttatt ctctatgctg ttcatgatcg taaaggcaaa
     1681 gcgaataccg gcgtcactct ggagccaatc aacagtcaga acgcaccaaa aggtcacttc
     1741 ttcctgcacc cgcgtgcacg ttcaccacac tatattgtga tgaatgacaa gaaacactaa
     1801 ccatgtctga atggttataa gacaagggag cgataattca tcgctccctt tttcgtgctt
     1861 gctgtcgtat tgacttaacc gggataagta cgagaatgag cgcacatctg tttaccggaa
     1921 accagcacat atggatatct gctcccgaaa caagaaatta acgattagaa gaccagcgat
     1981 actggttgca ctggcacttt tactgtgtag ttgtaaaagc acgcctccag agtccatggt
     2041 gacaccacca gcaggttcaa agccaccagc cacgacgcaa caatcgtcac aaccgatgcg
     2101 tggcatctgg ctggccacgg tgtctcgcct cgactggcca ccggtttcct cggttaacat
     2161 tagtaacccc accagccggg cccgtgtaca acaacaggcg atgatcgaca aactggatca
     2221 tctgcaacgt ctcggtataa acacggtctt tttccaggtc aagccggacg gtaccgccct
     2281 gtggccatcg aaaattttgc cgtggtccga tcttatgacc ggtaagattg gtgaaaatcc
     2341 gggttacgat ccgctgcaat ttatgctcga cgaagcccac aagcgtggga tgaaagtaca
     2401 cgcctggttt aacccctatc gcgtatcggt taatacgaag cccggtacta tcagggaact
     2461 gaatagcact ctgtctcaac aaccggcgag cgtctatgtg caacaccgtg actggatcag
     2521 aacgtctggc gatcgctttg tcctcgaccc gggcatccct gaggttcagg actggatcac
     2581 atcaatagtc gccgaagtgg tttcccgcta tccggtagat ggcgtgcagt ttgacgacta
     2641 tttctatacg gagtcaccgg gttcacggct aaatgataac gaaacgtacc gtaaatacgg
     2701 aggcgcattt gcgtcaaaag cagactggcg gcgcaacaat actcagcagt taattacaaa
     2761 agtatcgcac accattaaaa gcattaagcc gggagtcgaa tttggcgtta gcccggcagg
     2821 cgtgtggcgt aaccgatcac acgatccgct cggttccgat acccgaggcg cggcagccta
     2881 tgacgaatcc tacgctgaca cccgtcgatg ggtggaacaa ggattgctgg attacattgc
     2941 tccccaaatt tactggccgt tctcacggag tgccgcgcgt tatgacgtgt tggcaaaatg
     3001 gtgggcggat gtcgttaaac cgaccaggac ccgcctgtat atcggtatcg ccttctataa
     3061 agtgggtgaa ccttcaaaga tagagccaga ctggatgatt aacggcggcg taccggaact
     3121 gaaaaagcag ctcgatctta acgatgcggt accagaaatt agcggcacca tcttgttccg
     3181 tgaggactat ctgaataaac cgcagactca acaagcggtc agctatctgc aaagtcgttg
     3241 gggcagttaa actcccatgc ttactttgta acaagccggt gctttaccca ccggcttgtt
     3301 acaccttgtg aaatatccca ctagtaatca tgcttacata agtcaaatta accacgcaat
     3361 taaccacact tagttaaaca gctataaatc cctaataaaa atgtatgaat atgaaaaacc
     3421 atacgatatt cgctgtcacc gaaaaataat tacgatgggc tatactcttc tgaagaacag
     3481 tagcgtagat tgaaactgtc ctaagtcgct tatttctttt cagtatatct tcatatttca
     3541 ggagaatatg gtgcagttag tcgatctcgc acgttgcgtt ttgattccgt ctgatttccc
     3601 agccttataa gggtgtgaat tatggagatg tattttaaaa gaatgaaaga tgagtggacc
     3661 ggacttgtcg aacaggcaga tccactcatt cgtgctaaag ccgcggaaat tgccgttgcg
     3721 catgctcatt atctgagtat cgagttttat cgaattgtcc gcatcgaccc gcatgccgaa
     3781 gaattcttga gtaatgaaca agttgagcgg cagttgaaaa gtgcgatgga acgctggatt
     3841 attaacgtgc tttctgccca ggttgacgat gtcgaaaggc taatacaaat ccagcatacc
     3901 gtcgcggaag tgcatgcccg cataggaatt ccggtagaaa ttgtcgagat ggggtttcgg
     3961 gtgctgaaaa aaatcctcta tccggtaatc ttctcttcgg attattctgc cgcagaaaaa
     4021 cttcaggtct accatttctc gattaacagt attgatatcg ctatggaagt gatgacccgc
     4081 gcgtttacct ttagtgacag tagtgcctca aaggaagatg aaaactatcg tatcttctcg
     4141 ttactagaaa acgccgaaga agaaaaagaa cggcaaatag cctcaatact ttcatgggaa
     4201 atagatatta tctataaaat cctgctggat tctgatttag gcagtagttt gcctttaagc
     4261 caggctgatt ttggcctgtg gtttaaccat aaaggtcgac attattttag tggcattgcc
     4321 gaagtaggca tatctcccgt ctgattcagg atttcgacgg tatattcaat caaaccatgc
     4381 gtaacaccag gaatttgaat aacagaagtc tgcgggtgaa atttttatta cagataagaa
     4441 atactgtatc gcaaattatt accttgctgc gtgaattgtt tgaagaagta tcgcgccacg
     4501 aagtcggtat ggatgtactg acgaaattac ttaaccgccg cttcctgccg actatcttca
     4561 aacgcgaaat tgcccatgcc aacctgaccg gtacaccgct gtcagtgctg attattgacg
     4621 ttgataaatt caaagagatc aacgatacgt ggggccataa cactggcgat gaaattctgc
     4681 gtaaagtctc tcaggccttt tatgacaacg tccgcagtag tgattatgtt tttcgctacg
     4741 ggggcgatga atttatcatt gttttgactg aagcttctga aaacgaaacg ttacgtaccg
     4801 cagaacgtat tcgcagtcgg gcggagaaaa ccaaactgaa agccgcaaac ggcgaggata
     4861 ttgccctctc actttccatc ggtgccgcca tgtttaatgg tcatcctgac tatgagcgcc
     4921 tcattcaaat agccgatgaa gctctgtata tcgccaaaag acgaggtaga aaccgtgttg
     4981 aactctggaa agccagtctt tagatgcgcc aggatgcaga ggtaatcatg aagctaaccg
     5041 atgcggaaaa tgccgccgat ggcatttttt tccccgccct tgaacaaaat atgatgggcg
     5101 cggtgttaat taacgaaaat gatgaagtga tgtttttcaa ccccgccgca gagaagctct
     5161 gggggtacaa acgtgaagaa gtcattggca ataacattga tatgctgatt ccgcgggatt
     5221 tgcgtcctgc gcatcctgaa tacattcgtc ataaccgtga aggtggtaaa gcgcgcgtcg
     5281 aggggatgag tcgggagctg cagctggaga aaaaagacgg cagtaaaatc tggacccgtt
     5341 ttgcgctatc gaaagtgagc gccgagggga aagtttatta cctggcgctg gtacgggatg
     5401 ccagcgtaga aatggcgcaa aaagaacaga cccgacaatt gattattgcc gttgaccatc
     5461 tcgaccgacc ggtgattgtc ctcgatccgg aacgccatat tgtgcagtgc aatcgcgcat
     5521 ttaccgaaat gtttggttac tgcattagcg aagcctgcgg tatgcagccc gatacactcc
     5581 tgaacattcc tgaattccct gccgataacc gcattcgttt acaacagttg ctatggaaaa
     5641 ccgcccgcga tcaggacgaa tttctgctgt tgacgcgcac cggtgaaaaa atctggatta
     5701 aagcctctat cagcccggtt tatgacgtgc tcgcgcatct gcagaacctg gtaatgactt
     5761 tctcggatat caccgaagaa cggcaaatcc gccagcttga aggcaatatt ctcgccgcca
     5821 tgtgcagcag cccgccattt catgaaatgg gggaaatcat ttgtcgtaac atcgaatctg
     5881 ttctcaacga atcgcatgtt tcgctgttcg cactgcgcaa cgggatgccg atacactggg
     5941 cgtcatcttc gcacggtgca gaagttcaaa atgcgcaaag ctggtcagcg accattcgtc
     6001 agcgtgatgg cgcgcctgcg gggatcctgc aaattaaaac ctcgtcagga gcagaaacca
     6061 gcgcctttat cgaacgcgtg gcagatatca gtcagcatat ggccgcgctg gcgctggaac
     6121 aggaaaaaag ccgccagcat attgaacaac tcatccaatt tgatccgatg accggtctgc
     6181 caaatcgcaa taacctgcac aattacctcg atgacctggt cgacaaagcc gtctctccgg
     6241 tggtgtatct catcggtgtt gaccatattc aggatgtgat tgatagcctt ggctatgcgt
     6301 gggccgatca ggcattgctg gaagtggtca atcgctttcg tggaaaactc aaaccggatc
     6361 agtatctctg tcgtatcgaa ggtacgcagt ttgtcctcgt gagcctggaa aacgacgtca
     6421 gtaacattac ccagatcgcc gatgagctac ggaatgtggt cagcaagccg ataatgattg
     6481 acgataaacc attcccgctt accttgagta ttggcatcag ctacgacgtg ggtaaaaacc
     6541 gcgattacct actctccact gctcacaatg caatagatta tattcgcaag aatggcggta
     6601 acggctggca gttcttcagc ccggcgatga acgaaatggt aaaagagcgt ttggttttag
     6661 gcgcagcgct gaaagaagcg attagcaata accaactgaa acttgtttac cagccgcaaa
     6721 tcttcgcaga aacgggtgaa ctgtacggca tcgaagccct tgcgcgctgg cacgatcccc
     6781 agcatggtca tgtgccccct tcacggttta ttcctctcgc agaagagatt ggtgaaatcg
     6841 aaaatattgg gcgctgggtc atcgcggaag cttgccgtca gttagcagaa tggcgtagcc
     6901 agaatattca tatcccggcg ctttccgtta acttgtccgc actgcacttt cgcagtaatc
     6961 aactgcctaa tcaggtgtct gatgcaatgc acgcctgggg tattgacggc caccagctga
     7021 cggtagaaat cacggaaagc atgatgatgg aacacgatac cgaaatcttt aagcgcattc
     7081 agatcctgcg tgatatgggc gtgggcttat cggtagatga ttttggtacg ggcttttccg
     7141 gattatcccg cttagtcagt cttccggtaa cggaaatcaa aattgacaaa agttttgtcg
     7201 atcgttgtct gaccgaaaaa cgcatccttg ccttacttga agccattacc agcattgggc
     7261 aaagcctcaa tttaaccgtc gtggcggaag gcgtcgaaac caaagagcaa tttgagatgc
     7321 tacgcaagat ccactgtcgc gttattcagg gatatttctt ttcccgcccc ctacccgccg
     7381 aagaaattcc aggctggatg agcagcgtgt taccgctgaa aatctgacaa attcctctcg
     7441 cccgcactcg cgggttttca tttaacgtga caccgtcact taaatactgt gatttcagct
     7501 acgattccgg gagattcctt ccttaacttc ccctcttgca ccaaaactgc actacgctgc
     7561 acaaatgttg atcaaaagtt aaaaaatata actttaagcc agcattctgg cgcttatccc
     7621 ggcatggaat gagatctgca taagcggaaa gcgcagcaat ttttgtctta tacaggaacc
     7681 gtttatgttg gataccaccg aactggttga tttagccgta atcttccctg atctggagat
     7741 cgaattgaaa tacgcctgcg ctgataacat cacaggtaaa gctatttatc agcaagcgcg
     7801 ttgtctgcta cacaaggatg cgattaccgc gctggcgaaa agtatcagta tcgcccagct
     7861 gtcaggctta caactggtga tttacgatgc gtatcgccca caacaagcac aggcgatgtt
     7921 gtggcaagcc tgcccagacc cgcaatatgt tgttgatgtg acggtcggtt ctaatcacag
     7981 ccgtggcacg gcgatcgacc tgacgcttcg tgatgagcac gggaacatcc tcaatatggg
     8041 cgcagggttc gatgaaatgc acgagcgctc ccatgcctat cacccttccg tcccgcccgc
     8101 cgctcagcgc aatcggctgt tgctgaatgc gattatgact ggtggcggtt ttgtcggtat
     8161 ctccagcgaa tggtggcact tcgaattacc ccaggcagcg agttacccac tgctcgctga
     8221 tcaattcacc tgttttatat cccctggcac acagcacgtc agttaatcag gaaactgtca
     8281 tgaagagatc gataccgttt cgtcctacat tgctcgcgct cgtccttgcc acaactttcc
     8341 cggttgcgca cgccgccgta ccgaaagata tgctggtgat tggtaaggcc gccgatccac
     8401 aaaccctcgc cccggcggta acaatagata ataacgactg gacggtgacc tacccgtctt
     8461 atcagcggct ggttcagtac aaaacggacg gtgataaagg ctcaaccgac gttgaaggcg
     8521 atctggcaag tagctggaaa gcgtctgacg atcaaaaaga gtggacgttc accctgaagg
     8581 acaatgctaa atttgccgat ggcacaccgg tcactgccga agcagtaaaa ctctcttttg
     8641 agcggctact aaaaatcggc caggggccag cagaagcatt tcccaaagat ttaaagattg
     8701 atgctcccga cgaacatacg gtgaagttta cccttagcca gccattcgca ccgttcctct
     8761 acacgctggc gaatgacggt gcatccatta tcaatccggc ggtgttaaag gaacatgcag
     8821 cggatgatgc ccgcggcttc ctcgcgcaaa ataccgccgg ttccggacca tttatgctga
     8881 aaagctggca aaaaggtcag caattagttc tggtgccaaa tccgcattac cctggcaata
     8941 aaccgaactt taagcgagta tcggtaaaaa ttattggtga aagtgcctcc cgtcgcctgc
     9001 agctctcccg tggtgatatt gacattgccg atgcgctgcc ggtggatcaa ctcaacgccc
     9061 tgaagcagga aaacaaagtc aatgtggcag agtatccgtc actgcgcgtc acctacctgt
     9121 atctgaataa cagcaaagcg cctcttaatc aggcggatct gcgtcgggcc atttcctggt
     9181 ctaccgatta tcagggcatg gttaacggca ttctgagtgg taacggaaaa cagatgcgcg
     9241 gcccgattcc ggaaggcatg tggggctacg atgcgacggc aatgcaatac aaccatgac
//
LOCUS       DADMHM010000156         9170 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.159, whole genome shotgun sequence.
ACCESSION   DADMHM010000156 DADMHM010000000
VERSION     DADMHM010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9170)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9170)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9170
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.159"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..1067
                     /gene="hpaX"
                     /locus_tag="JN125_003171"
     CDS             <1..1067
                     /gene="hpaX"
                     /locus_tag="JN125_003171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001597174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="4-hydroxyphenylacetate permease"
                     /protein_id="HAY8872850.1"
                     /translation="VIFGIPSNIMLSIVGARRWIATIMVLWGIASTATMFATGPTSLY
                     VLRILVGITEAGFLPSILLYLTFWFPAYFRARANALFMVAMPVTTALGSIVSGYILSL
                     DCVMALKGWQWLFLLEGFPSVLLGVMVWFWLDDSPDKAKWLTKEDKKCLQEMMDNDRL
                     TLVQPEGAISHHAMQQRSMWREIFTPVVMMYTLAYFCLTNTLSAISIWTPQILQSFNQ
                     GSSNITIGLLAAVPQICTILGMVYWSRHSDRRQERRHHTALPYLFAAAGWLLASATDH
                     NMIQMLGIIMASTGSFSAMAIFWTTPDQSISLRARAIGIAVINATGNIGSALSPFMIG
                     WLKDLTGSFNSGLWFVAACW"
     gene            1139..2017
                     /gene="hpaA"
                     /locus_tag="JN125_003172"
                     /pseudo
     CDS             1139..2017
                     /gene="hpaA"
                     /locus_tag="JN125_003172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224927.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate catabolism regulatory
                     protein HpaA"
     gene            2268..3830
                     /gene="hpaB"
                     /locus_tag="JN125_003173"
     CDS             2268..3830
                     /gene="hpaB"
                     /locus_tag="JN125_003173"
                     /EC_number="1.14.14.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000801462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase,
                     oxygenase component"
                     /protein_id="HAY8872851.1"
                     /translation="MKPEDFRASTQRPFTGEEYLKSLQDGREIYIYGERVKDVTTHPA
                     FRNAAASVAQLYDALHKPEMQDSLCWNTDTGSGGYTHKFFRVAKSADDLRQQRDAIAE
                     WSRLSYGWMGRTPDYKAAFGCALGANPGFYGQFEQNARNWYTRIQETGLYFNHAIVNP
                     PIDRHLPTDKVKDVYIKLEKETDAGIIVSGAKVVATNSALTHYNMIGFGSAQVMGENP
                     DFALMFVAPMDADGVKLISRASYEMVAGATGSPYDYPLSSRFDENDAILVMDNVLIPW
                     ENVLIYRDFDRCRRWTMEGGFARMYPLQACVRLAVKLDFITALLKKSLECTGTLEFRG
                     VQADLGEVVAWRNTFWALSDSMCSEATPWVNGAYLPDHAALQTYRVLAPMAYAKIKNI
                     IERNVTSGLIYLPSSARDLNNPQIDQYLAKYVRGSNGMDHVQHIKILKLMWDAIGSEF
                     GGRHELYEINYSGSQDEIRLQCLRQAQSSGNMDKMMAMVDRCLSEYDQNGWTVPHLHN
                     NDDINMLDKLLK"
     gene            3848..4360
                     /locus_tag="JN125_003174"
     CDS             3848..4360
                     /locus_tag="JN125_003174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-monooxygenase reductase
                     subunit"
                     /protein_id="HAY8872852.1"
                     /translation="MQLDEQRLRFRDAMASLSAAVNIITTEGDAGQCGITATAVCSVT
                     DTPPSLMVCINANSAMNPVFQGNGKLCVNVLNHEQELMARHFAGMTGMAMEERFSLSC
                     WQKGPLAQPVLKGSLASLEGEIRDVQAIGTHLVYLVEIKNIILSAEGHGLIYFKRRFH
                     PVMLEMEAAI"
     gene            4753..6903
                     /gene="btsT"
                     /locus_tag="JN125_003175"
     CDS             4753..6903
                     /gene="btsT"
                     /locus_tag="JN125_003175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313340.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate/proton symporter BtsT"
                     /protein_id="HAY8872853.1"
                     /translation="MDTKKLFKHIPWVILGIIGAFCLAVVALRRGEHVSALWIVVASV
                     SVYLVAYRYYSLYIAQKVMKLDPTRATPAVINNDGLNYVPTNRYVLFGHHFAAIAGAG
                     PLVGPVLAAQMGYLPGTLWLLAGVVLAGAVQDFMVLFISSRRNGASLGEMIKEEMGPV
                     PGTIALFGCFLIMIIILAVLALIVVKALAESPWGVFTVCSTVPIALFMGIYMRFIRPG
                     RVGEVSVIGIVLLVASIYFGGVIAHDPYWGPALTFKDTTITFALIGYAFVSALLPVWL
                     ILAPRDYLATFLKIGVIVGLALGIVVLNPELKMPAMTQYIDGTGPLWKGALFPFLFIT
                     IACGAVSGFHALISSGTTPKLLANETDARFIGYGAMLMESFVAIMALVAASIIEPGLY
                     FAMNTPPAGLGITMPNLHEMGGENAPIIMAQLKDVTAHAAATVSSWGFVISPEQILQT
                     AKDIGEPSVLNRAGGAPTLAVGIAHVFHKVLPMADMGFWYHFGILFEALFILTALDAG
                     TRSGRFMLQDLLGNFIPFLKKTDSLVAGIIGTAGCVGLWGYLLYQGVVDPLGGVKSLW
                     PLFGISNQMLAAVALVLGTVVLIKMKRTQYIWVTVVPAVWLLICTTWALGLKLFSTNP
                     QMEGFFYMASQYKEKIANGTDLTAQQIANMNHIVVNNYTNAGLSILFLIVVYSIIFYG
                     FKTWLAVRNSDKRTDKETPYVPIPEGGVKISSHH"
     gene            7034..7237
                     /locus_tag="JN125_003176"
     CDS             7034..7237
                     /locus_tag="JN125_003176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbdD/YjiX family protein"
                     /protein_id="HAY8872854.1"
                     /translation="MFGNLGQAKKYLGQAAKMLIGIPDYDNYVEHMKTNHPDKPYMSY
                     EEFFRERQNARYGGDGKGGMRCC"
     gene            7248..8204
                     /gene="yjiA"
                     /locus_tag="JN125_003177"
     CDS             7248..8204
                     /gene="yjiA"
                     /locus_tag="JN125_003177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313338.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HAY8872855.1"
                     /translation="MNPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVS
                     VDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNLDKGNIQFDRLVIECTGMA
                     DPGPIIQTFFSHEILCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKT
                     DIAGEAEKLRERLARINARAPVYTVTHGDIDLGLLFNTNGFMLEENVVSTKPRFHFIA
                     DKQNDISSIVVELDYPVDISEVSRVMENLLLESADKLLRYKGMLWIDGEPNRLLFQGV
                     QRLYSADWDRPWGDEKPHSTMVFIGIQLPEDEIRAAFAGLKK"
     gene            complement(8282..>9170)
                     /locus_tag="JN125_003178"
     CDS             complement(8282..>9170)
                     /locus_tag="JN125_003178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001569102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="penicillin acylase"
                     /protein_id="HAY8872856.1"
                     /translation="RVTEIDRLLEQKPRLTADQAWDVIRQTSRQDLNLRLFLPTLQAA
                     TSGLTQSDPRRQLVDTLTRWDGINLLNDDGKTWQQPGSAILNVWLTSMLKRTVVAAVP
                     MPFDKWYSASGYETTQDGPTGSLNISVGAKILYEAVQGDKSPIPQAVDLFAGKPQQEV
                     VLAALEDTWETLSKRYGNNVSNWKTPAMALTFRANNFFGVPQAAAEETRHQAEYQNRG
                     TENDMIVFSPTTSDRPVLAWDVVAPGQSGFIAPDGTVDQHYEDQLKMYENFGRKSLWL
                     TKQDVEAHKESQEVLHVQR"
BASE COUNT         2096 a         2497 c         2411 g         2166 t
ORIGIN      
        1 atgtcatctt cggcattccc agcaacatta tgctgagtat tgtcggtgcg cggcgctgga
       61 tcgccaccat catggtgctc tggggcatcg cctctactgc caccatgttt gccactggcc
      121 ccaccagctt gtacgtactg cgtatactgg ttggcattac cgaagccggc tttctgccta
      181 gtattctgct gtatttaacc ttctggtttc cggcctattt ccgcgcccgt gccaacgcct
      241 tgtttatggt agcaatgccg gtaacgacag cgttgggctc gatcgtttcc ggctacattt
      301 tgtcgctgga ttgcgtcatg gcattaaaag gctggcagtg gctgtttttg ctggaaggct
      361 tcccgtcggt attactcggc gtcatggtgt ggttctggct tgatgactca ccggacaaag
      421 ctaagtggct gacgaaagaa gacaaaaaat gcctgcaaga gatgatggat aacgatcgtc
      481 tgacgctggt tcagccagag ggagccatca gccaccacgc catgcaacaa cgcagtatgt
      541 ggcgggagat cttcactccg gtggtgatga tgtataccct ggcgtatttc tgcctgacca
      601 acacacttag tgcgatcagc atctggacac cgcagatcct gcaaagtttt aatcagggca
      661 gcagtaatat caccatcggc ctgctggccg ccgtaccgca gatttgtacc attctcggga
      721 tggtctactg gagccgtcac tcagatcgcc gccaggaacg aaggcatcac accgcccttc
      781 cttatttgtt cgctgccgca ggttggttac tggcttcggc aactgatcac aacatgatcc
      841 agatgctggg gatcattatg gcttcgaccg gatcattcag cgcaatggcg attttctgga
      901 caacaccgga tcagtccatc agcctgcggg cacgagcgat cggtattgcg gtgatcaacg
      961 ccactggcaa cattggttca gcgttaagtc cgtttatgat cggctggttg aaagatttga
     1021 ccggcagctt taacagtgga ttgtggtttg ttgccgcctg ctggtgattg gtgcggggat
     1081 tatctgggcg attccaatgc agtcctcccg tccgcgagcg accccgtaag gaacgacgat
     1141 gtgtgaccgt cagattgcca atattgatat cagcaaagag tacgatgaaa gcctgggcac
     1201 ggacgatgtg cattatcagt cgttcgcccg catggcggca ttttttggcc gccatatgct
     1261 gccacatcgc cacgaacagt actttcagat gcatttcctc aatagcggac agattgagct
     1321 acagcttgac gatcatcgct actcggtgga agcgcccctg tttgtcctga cgccgccgtc
     1381 agtacctcat gcgtttatta cggagtctga cgccgacggt catgtgttga cggtacggga
     1441 agatctgatc tgacccctgc tggaagttct ttatccgggc actcgggaaa ccttcggcct
     1501 gccgggggcc tgtcactggc agataaaccc gacgaactgg cggcgctgga acactattgg
     1561 caactgatag agcgggaatc ggtggaacaa ctgcctggac gggaacacac cctgacgtta
     1621 ctggcacagg cagtgttcac cctactgctg cgtaacgcaa aactcgacga ccatgccgcc
     1681 agcgggatgc gcggagaatt aaaactgttc cagcgtttta atatgctgat tgaaagccat
     1741 tttcatcagc actggacagt accggattac gctaacgaac tgcatatcac cgaatcacga
     1801 ctcacggaca tctgccgtcg ctttgccaac cgtccgccaa aacggttgat tttcgacagg
     1861 cagctgcgag aagccaagcg gctgctgctg ttttctgata acgccgtgaa caatattgcc
     1921 tggcaataag gatccggctt attttgcgcg cttttttaat cgcttagtcg gttgctcgcc
     1981 cagtgcttat cgcgccaaaa aagtacctgt gacgtgaaaa tcccttagcc ttaacgggaa
     2041 accaggcacc accagctatt cccctttctc cgcctggagc aaggggattt agtaacgtca
     2101 aaaatcgcta aaagcgacct cgatcacaaa accgtacccg acctgaaaag taccagccat
     2161 tgtcccaaaa gtctcttccc gtaatcgccc ctgcaagctt caattgaata acaaaaacaa
     2221 cacacaaaat taacaatcgt attccgatta atactgtaga ggtcgacatg aaaccagaag
     2281 atttccgcgc cagtacccaa cgtccgttca ccggggaaga gtatctgaaa agcctgcagg
     2341 atggtcgcga gatctatatc tatggcgagc gagtgaaaga cgtcactact catccggcat
     2401 ttcgtaatgc ggcagcgtct gttgcccaac tgtacgacgc gctacacaaa ccggagatgc
     2461 aggactctct gtgctggaac accgacaccg gcagcggcgg ctatacccat aaattcttcc
     2521 gcgtggcgaa aagtgccgac gacctgcgcc agcaacgcga tgccatcgct gagtggtcac
     2581 gcctgagcta tggctggatg ggccgtaccc cagactacaa agctgctttc ggttgcgcac
     2641 tgggcgcgaa tccgggcttt tacggtcagt tcgagcagaa cgcccgtaac tggtacaccc
     2701 gtattcagga aactggcctc tactttaacc acgcgattgt taacccaccg atcgatcgtc
     2761 atttgccgac cgataaagta aaagacgttt acatcaagct ggaaaaagag actgacgccg
     2821 ggattatcgt cagcggtgcg aaagtggttg ccaccaactc ggcgctgact cactacaaca
     2881 tgattggctt cggctcggca caagtgatgg gcgaaaaccc ggacttcgca ctgatgttcg
     2941 ttgcgccaat ggatgccgat ggcgtaaaat taatctcccg cgcctcttat gagatggtcg
     3001 cgggtgctac cggctcgcca tacgactacc cgctctccag ccgcttcgat gagaacgatg
     3061 cgattctggt gatggataac gtgctgatcc catgggaaaa cgtactgatc taccgcgatt
     3121 tcgatcgctg ccgtcgctgg acaatggaag gcggttttgc ccgtatgtat ccgctgcaag
     3181 cctgtgtgcg cctggcagtg aaattagact tcattacagc actgctgaaa aaatcactcg
     3241 aatgtaccgg caccctggag ttccgtggtg tacaggccga tctcggtgaa gtggtggcgt
     3301 ggcgcaacac cttctgggca ttgagtgact cgatgtgttc tgaagcgacg ccgtgggtca
     3361 acggggctta tttaccggat catgccgcac tgcaaaccta tcgcgtactg gcaccaatgg
     3421 cctacgcgaa gatcaaaaac attatcgaac gcaacgttac cagtggcctg atctatctcc
     3481 cttccagtgc ccgtgacctg aacaatccgc agatcgacca gtatctggcg aagtatgtgc
     3541 gcggttcgaa tggtatggat cacgtccagc acatcaagat cctcaaactg atgtgggacg
     3601 ccattggcag cgagtttggt ggtcgccacg aactgtatga aatcaactac tccggtagcc
     3661 aggatgagat tcgcctgcag tgtctgcgcc aggcacaaag ctccggcaat atggacaaga
     3721 tgatggcgat ggttgatcgc tgcctgtcgg aatacgacca gaacggctgg actgtgccgc
     3781 acttgcacaa caacgacgat atcaacatgc tggataagct gctgaaataa cgcagcagga
     3841 ggttaagatg caattagatg aacagcgcct gcgctttcgt gacgcgatgg ccagcctgtc
     3901 ggcagcggta aatattatca ccaccgaggg cgacgccgga caatgcggga ttacggcaac
     3961 ggccgtctgc tcggtcacgg atacaccacc atcgctgatg gtgtgcatta acgccaacag
     4021 tgcgatgaac ccggtttttc agggcaacgg taagttgtgc gtcaacgtcc tcaaccatga
     4081 gcaggaactg atggcacgcc acttcgcggg catgacaggc atggcgatgg aagagcgttt
     4141 tagcctctca tgctggcaaa aaggtccgct ggcgcagccg gtgctgaaag gttcgctggc
     4201 cagtcttgaa ggtgagatcc gcgatgtgca ggcaattggc acacatctgg tgtatctggt
     4261 ggagattaaa aacatcatcc tcagtgcaga aggtcacgga cttatctact ttaaacgccg
     4321 tttccatcca gtgatgctgg aaatggaagc tgcgatttaa gctccagccc cttcacgtat
     4381 tcgtcgaagg ggcattttta ttgtgatctc aatcacatat ccacccgatg aataattctt
     4441 gcccaaccgc tcaccgccat tcctgaccgc ttacgtccct aaaataacca ctcagttatt
     4501 taccttactt tacgcgcgcg taactctggc aacatcactg caggatagcg gtcaatttac
     4561 ctcctcaaac gcaacgcaaa cctagaacgg cttcggccta tgattaacaa attactctat
     4621 gaattttggt ttgcaggaag gcagcaagtg agtgaatccc cgggagctta caacagtaag
     4681 tgacagaggt gaacgaacgc agctgccgca cctgtaagcc aaaagacgac gagtaaaatg
     4741 ccaggtttta ctatggatac gaaaaaacta ttcaagcaca taccctgggt gattctcgga
     4801 atcatcggtg cattctgcct cgcggtagtt gcattacgtc ggggggagca cgtcagcgcc
     4861 ctgtggatcg tggtcgcctc tgtgtcggtg tatctggtgg cgtatcgcta ctacagtctg
     4921 tacatcgccc agaaggtgat gaaactcgac cccacgcgcg cgacgcctgc ggttattaac
     4981 aacgacggtc tgaactacgt tccgaccaac cgttacgtgt tgtttggtca ccacttcgcc
     5041 gctatcgctg gtgccggtcc gctggttggt ccggtgctcg ccgcgcagat gggctacctg
     5101 cctggcacgc tgtggctgct ggcgggggta gtactggccg gtgcggttca ggactttatg
     5161 gtgctgttta tctcctctcg ccgtaacggc gcatctctcg gtgagatgat caaagaagag
     5221 atgggaccag taccggggac tatcgcgctg tttggctgtt tcttaatcat gatcatcatc
     5281 ctcgccgttc tggcgctgat tgtggttaaa gccctggccg aaagtccgtg gggtgtcttc
     5341 accgtttgct caaccgtacc gattgcgctg tttatgggta tctacatgcg ctttatccgt
     5401 ccggggcgtg taggtgaagt ttctgttatt ggtatcgtgc tgctggttgc ctctatctat
     5461 ttcggtggcg tgattgctca cgatccgtac tggggtccgg cactgacctt taaagacacc
     5521 accattacct tcgcgctgat tggctatgcg tttgtttccg cactgctgcc ggtgtggctg
     5581 atcctcgcac cgcgcgacta tctggcaacc ttcctgaaaa tcggcgttat cgtcggcctg
     5641 gcgctgggta tcgtggtact gaacccggaa ctgaaaatgc ctgcaatgac ccagtacatt
     5701 gacggtactg gcccgctgtg gaaaggcgct ctgttcccgt tcctgttcat caccatcgcc
     5761 tgtggtgcgg tatctggctt ccacgcgctg atctcttccg gtacgacgcc gaaattgctg
     5821 gctaacgaaa ccgacgcgcg tttcattggc tacggcgcaa tgctgatgga atccttcgtg
     5881 gcgattatgg cgctggttgc tgcgtccatc atcgaaccgg gtctttactt cgcgatgaat
     5941 accccgcctg ctggccttgg catcaccatg cctaacctgc atgaaatggg tggcgagaac
     6001 gcgccgatca tcatggcgca gctgaaagac gttaccgcac acgcggcggc gaccgtcagc
     6061 tcctggggct tcgtgatttc gccagagcag atcctgcaaa ccgcgaaaga cattggtgag
     6121 ccttctgtcc tgaaccgtgc aggtggcgcg ccgacgctgg cggtaggtat cgctcacgtg
     6181 ttccacaaag tgctgccgat ggctgacatg ggcttctggt atcacttcgg tattctgttc
     6241 gaagccctgt tcatcctgac cgcgctggat gcgggtactc gttctggccg ctttatgctg
     6301 caagacctgc tgggtaactt catcccgttc ctgaaaaaaa ccgactctct ggttgccggt
     6361 atcatcggta ctgcgggctg tgtgggtctg tggggctacc tgctgtatca gggcgtggtc
     6421 gatccgctgg gcggcgttaa gagcctgtgg ccgctgttcg gtatttccaa ccagatgctg
     6481 gcagccgtag cgctggtact gggcaccgtt gtgctgatta agatgaagcg cacccaatac
     6541 atctgggtaa ctgttgttcc ggctgtatgg ctgcttatct gcaccacctg ggcgctgggt
     6601 ctgaaactgt tcagcaccaa cccgcagatg gaaggcttct tctacatggc aagccagtac
     6661 aaagagaaga ttgctaacgg tactgacctg acggcgcagc agattgccaa catgaaccac
     6721 atcgttgtga acaactacac caacgcaggc ctgagtattc tgttcctgat tgtggtgtac
     6781 agcatcatct tctacggttt caaaacctgg cttgcggtgc gtaacagcga caaacgtact
     6841 gacaaagaaa ctccgtacgt tccaatcccg gaaggcggcg tgaagatctc ttcgcaccac
     6901 taaccggttg ccggatgcgc tgcgcgtatc cggcctacaa agtgtctatc gtaggccgga
     6961 taaggcgttt acgccgcatc cggcaaatcc ctagcccgga ccttccgggc tttacgcata
     7021 tctggaaggc aaaatgtttg gtaacttagg acaggcaaaa aaatatctcg gccaggcggc
     7081 gaagatgttg attggcattc cagactacga caactacgtc gagcatatga agaccaacca
     7141 tcccgacaag ccgtacatga gctatgaaga attcttccgc gaacgccaga acgcgcgcta
     7201 cggcggcgat ggtaaaggcg gtatgcgctg ttgttaatgg agagagcatg aacccgattg
     7261 cagttaccct actcaccggt tttttaggcg cgggcaaaac caccctgctg cgccatattc
     7321 ttaacgaaca acacggctac aagattgccg tgattgaaaa cgaattcggc gaagtctccg
     7381 ttgatgatca actgattggc gaccgcgcca cgcagatcaa aacgctgacc aacggctgca
     7441 tctgctgttc gcgctccaac gagctggaag acgcactact cgacctgctg gataatctcg
     7501 acaagggcaa tattcagttc gaccgtctgg tcattgaatg caccggcatg gccgatcccg
     7561 gcccgattat tcagaccttc ttctcccatg agattttatg ccagcgctac ctgctggacg
     7621 gggtgattgc gctggtggat gcggtacatg ccgatgagca gatgaaccag ttcaccatcg
     7681 cccagtccca ggttggctac gccgaccgta ttctgctgac gaaaaccgac atcgcaggcg
     7741 aagcagagaa actgcgtgaa cgcctggcgc gcatcaacgc ccgcgcaccg gtctacaccg
     7801 ttacccacgg cgatatcgac ctgggccttc tgttcaacac caacggtttt atgctggaag
     7861 aaaacgtcgt cagcaccaaa ccgcgtttcc actttatcgc ggacaaacaa aacgatattt
     7921 cgtcgattgt ggtggaactg gattacccag tagatatcag cgaagtttcc cgggtgatgg
     7981 aaaacctgct gctggaatcg gcggataaac tgctgcgtta caaagggatg ctgtggattg
     8041 acggcgaacc taaccgcctg ctgttccagg gcgtccagcg cctctacagc gccgactggg
     8101 accgcccgtg gggcgatgaa aaaccgcata gcacgatggt gtttatcggg attcagttgc
     8161 cggaggatga gattcgggcg gcgtttgcgg gactcaaaaa gtaaccagcc ctccaacatc
     8221 acaatacctg agactttatc accctcatat tcctccagaa tatgagggca ttcgggctta
     8281 attatctctg aacgtgcaac acttcctgcg actccttatg cgcctccaca tcctgcttcg
     8341 ttaaccagag cgacttacga ccaaaatttt cgtacatttt cagctgatct tcatagtgct
     8401 gatcaactgt tccatcggga gcaataaacc cactctgacc gggtgcgacc acatcccagg
     8461 caagcaccgg acgatcgctt gtcgttggtg agaaaacaat catatcgttt tctgttccac
     8521 ggttttgata ctccgcctga tgacgcgttt cttccgctgc ggcctgcggt acaccaaaga
     8581 aattatttgc ccggaacgtt aaggccattg caggtgtttt ccagttactc acattattgc
     8641 catagcgttt ggaaagagtc tcccaggtat cttccagcgc agccaacaca acctcctgct
     8701 gtggtttccc agcaaacaga tcaaccgcct gtgggattgg tgatttgtct ccctgcaccg
     8761 cctcatacaa aatttttgct ccaacactta tattcagcga accagttggg ccgtcctggg
     8821 ttgtttcgta gccactggcg ctgtaccact tatcaaatgg cataggtacg gcagccacta
     8881 cggtacgctt caacatactg gtcagccaaa cgttcaggat ggcagagcct ggctgctgcc
     8941 aggttttacc atcatcatta agcaaattga tgccatccca acgtgttaat gtatccacca
     9001 actgacggcg cggatcgctc tgtgtcaaac cagatgtcgc tgcttgcaga gtaggtaaaa
     9061 aaagcctcag gttaagatcc tgacgactgg tttggcgaat aacatcccat gcctgatcag
     9121 cagttaagcg tggcttttgc tcaagcagtc ggtcgatctc cgtaacgcga
//
LOCUS       DADMHM010000157         9162 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.160, whole genome shotgun sequence.
ACCESSION   DADMHM010000157 DADMHM010000000
VERSION     DADMHM010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9162)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9162)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9162
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.160"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            176..1150
                     /gene="cysB"
                     /locus_tag="JN125_003179"
     CDS             176..1150
                     /gene="cysB"
                     /locus_tag="JN125_003179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012017585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator CysB"
                     /protein_id="HAY8872857.1"
                     /translation="MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDEL
                     GIQIFSRSGKHLTQVTPAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHT
                     QARYALPNVIKGFIERYPRVSLHMHQGSPTQIADAVSKGNADFAIATEALHLYEDLVM
                     LPCYHWNRAIVVTPDHPLAGKKAITIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTP
                     RIVFTATDADVIKTYVRLGLGVGVIASMAVDPVADPNLVRVDAHDIFSHSTTKIGFRR
                     STFLRSYMYDFIQRFAPHLTRDVVDAAVALRSNEEIEVMFKDIKLPEK"
     gene            1445..1609
                     /locus_tag="JN125_003180"
     CDS             1445..1609
                     /locus_tag="JN125_003180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmiA family putative membrane protein"
                     /protein_id="HAY8872858.1"
                     /translation="MLISDGDYMRLAMPSGNQEPRRDPELKRKAWLAVFLGSALFWVV
                     VALLIWKVWG"
     gene            1612..1779
                     /locus_tag="JN125_003181"
     CDS             1612..1779
                     /locus_tag="JN125_003181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588450.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872859.1"
                     /translation="MVGQEQLESSPLCQHSDNETETKRECSVVIPDDWQLTSQQQAFI
                     ELFAEDDQPKQ"
     gene            1869..1949
                     /locus_tag="JN125_003182"
     CDS             1869..1949
                     /locus_tag="JN125_003182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014832221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872860.1"
                     /translation="MKYWSWMGAFSLSMLFWAELLWIITH"
     gene            2113..4634
                     /locus_tag="JN125_003183"
                     /pseudo
     CDS             2113..4634
                     /locus_tag="JN125_003183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415792.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase"
     gene            complement(4698..5288)
                     /gene="ribA"
                     /locus_tag="JN125_003184"
     CDS             complement(4698..5288)
                     /gene="ribA"
                     /locus_tag="JN125_003184"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HAY8872861.1"
                     /translation="MQLKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHT
                     PVLARVHSECLTGDALFSLRCDCGFQLEAALTQIAEEGRGILLYHRQEGRNIGLLNKI
                     RAYALQDQGYDTVEANHQLGFAADERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTE
                     AGINIVERVPLIVGRNPNNEHYLDTKAEKMGHLLNK"
     gene            5458..6222
                     /gene="pgpB"
                     /locus_tag="JN125_003185"
     CDS             5458..6222
                     /gene="pgpB"
                     /locus_tag="JN125_003185"
                     /EC_number="3.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase B"
                     /protein_id="HAY8872862.1"
                     /translation="MRSIARRTAVGAALLLVMPVAVWISGWRWQPGEQSWLLKAAFWV
                     TETVTQPWGVITHLILFGWFLWCLRFRIKAAFVLFAILAAAILVGQGVKSWIKDKVQE
                     PRPFVIWLEKTHHIPVDEFYTLKRAERGNLVKEQLAEEKNIPQYLRSHWQKETGFAFP
                     SGHTMFAASWALLAVGLLWPRRRTLTIAILLVWATGVMGSRLLLGMHWPRDLVVATLI
                     SWALVAVATWLAQRICGPLTPPAEENREIAQREQES"
     gene            6371..6679
                     /gene="lapA"
                     /locus_tag="JN125_003186"
     CDS             6371..6679
                     /gene="lapA"
                     /locus_tag="JN125_003186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapA"
                     /protein_id="HAY8872863.1"
                     /translation="MKYLLIFLLVLAIFVISVTLGAQNDQQVTFNYLLAQGEYRISTL
                     LAVLFAAGFAIGWLICGLFWLRVRVSLARAERKIKRLENQLSPATDVAVVPHSSAAKE
                     "
     gene            6686..7855
                     /gene="lapB"
                     /locus_tag="JN125_003187"
     CDS             6686..7855
                     /gene="lapB"
                     /locus_tag="JN125_003187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide assembly protein LapB"
                     /protein_id="HAY8872864.1"
                     /translation="MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVN
                     FLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLT
                     YEQRLLAIQQLGRDYMAAGLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKA
                     IDVAERLVKLGKDKQRVEIAHFYCELALQHMASDDLDRAMTLLKKGAAADKNSARVSI
                     MMGRVFMAKGEYAKAVESLQRVISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAV
                     EENTGADAELMLADIIEARDGSEAAQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRA
                     KESLMVLRDMVGEKVRSKPRYRCQKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGL"
     gene            8048..8785
                     /gene="pyrF"
                     /locus_tag="JN125_003188"
     CDS             8048..8785
                     /gene="pyrF"
                     /locus_tag="JN125_003188"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HAY8872865.1"
                     /translation="MTLTASSSSRAVTNSPVVVALDYHNRDDALSFVDKIDPRDCRLK
                     VGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASG
                     GARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLADLGVTLSPADYAERLAALTQK
                     CGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSDAGDQRRIMTPEQALSAGVDYM
                     AIGRPVTQSVDPAQTLKAINASLQRSA"
     gene            8785..9111
                     /gene="yciH"
                     /locus_tag="JN125_003189"
     CDS             8785..9111
                     /gene="yciH"
                     /locus_tag="JN125_003189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415798.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response translation initiation inhibitor
                     YciH"
                     /protein_id="HAY8872866.1"
                     /translation="MSDSNSRLVYSTETGRIDEPKAAPVRPKGDGVVRIQRQTSGRKG
                     KGVCLITGIDLDDAELTKLAAELKKKCGCGGAVKDGVIEIQGDKRDLLKSLLEAKGMK
                     VKLAGG"
BASE COUNT         2268 a         2137 c         2393 g         2364 t
ORIGIN      
        1 tcgcgaaagc ggcccttttt tattgcatat tattttttct tcacacctat acactaaggc
       61 tataaatgat atagtggtta tagttagcac cttttttatt attaaatcgt attagtcacc
      121 cgccaggtgt gacgaaaaaa cgatgttctg atggcgtcta agtggatggt ttaacatgaa
      181 attacaacaa cttcgctata ttgttgaggt ggtcaatcat aacctgaatg tctcatcaac
      241 agcggaagga ctttacacat cacaacccgg gatcagtaaa caagtcagaa tgctggaaga
      301 cgagctaggc attcaaattt tttcccgaag cggcaagcac ctgacgcagg taacgccagc
      361 agggcaagaa ataattcgta tcgctcgcga agtcctgtcg aaagtcgatg ccataaaatc
      421 ggttgccgga gagcacacct ggccggataa aggctcactg tatatcgcca ccacgcatac
      481 ccaggcacgc tacgcattac caaacgtcat caaaggcttt attgagcgtt atcctcgcgt
      541 ttctttgcat atgcaccagg gctcgccgac acaaattgct gatgccgtct ctaaaggcaa
      601 tgccgatttc gctatcgcca cagaagcgct gcatctgtat gaagatttag tgatgttacc
      661 gtgctaccac tggaatcggg ctattgtagt cactccggat cacccgctgg caggcaaaaa
      721 agccattacc attgaagaac tggcgcaata tccgttggtg acatatacct tcggctttac
      781 cggacgttca gaactggata ctgcctttaa ccgcgcaggg ttaacgccgc gtatcgtttt
      841 cacggcaacg gatgctgacg tcattaaaac ttacgtccgg ttagggctgg gggtaggggt
      901 cattgccagc atggcggtgg atccggtcgc cgatccgaac cttgtgcgcg ttgatgctca
      961 cgatatcttc agccacagta caaccaaaat tggttttcgc cgtagtactt ttttgcgcag
     1021 ttatatgtat gatttcattc agcgttttgc accgcattta acgcgtgatg tcgttgatgc
     1081 ggctgtcgca ttgcgctcta atgaagaaat tgaggtcatg tttaaagata taaaactgcc
     1141 ggaaaaataa tttcttgcgt tattttcggc accttttatg tagcgaaggt gccggaatat
     1201 attctctttt gttacttatt tctataccgt gcacaatatt tttatccctc atatttatag
     1261 ggtaaattac ctgtaaagta gtgtctaatt acccgcctcg caaattccag ttttcaaata
     1321 tctatttcag gtcaaaagat tgaattattc actggagacg attcgtaaat tcgctggatt
     1381 tttgactaaa gtttctttag gatttgtctc atcgtatgat taattacacc aatcgttcaa
     1441 cgtcttgctg ataagtgatg gcgattatat gaggttagca atgccttctg gaaatcagga
     1501 accccgccgc gatcctgaat taaaacgtaa agcctggctg gcggtttttc ttggttctgc
     1561 acttttctgg gtggttgtcg cactgctgat ttggaaagtg tggggataac tatggtcggt
     1621 caggagcaac tggagtcgtc accattatgc cagcatagtg acaatgaaac agaaacgaaa
     1681 cgggaatgtt ccgtcgttat tccagacgac tggcaactaa catcgcagca gcaagccttt
     1741 atagaactgt ttgctgaaga tgatcagccg aaacaataat tatcatcatt cttattaccc
     1801 atttttaatg aattaaaggg cttttaatac accgcagcaa taacagcttg agttatctca
     1861 acacaaatat gaaatattgg tcctggatgg gcgcgttttc tctgtcgatg ctcttctggg
     1921 ccgaactcct ctggatcatt actcactgat ccttgacccc gctgcggcgg ggttgtcatt
     1981 tgctttgcca caaggtttct cctcttttat caatttgggt tgttatcaaa tcgttacgcg
     2041 atgtttgtgt tatctttaat attcactctg aagagaatca gggcttcgca accctatcat
     2101 taaggaggag ctatgtcgtc aaccctacga gaagccagta aggacacgtt gcaggccaaa
     2161 gataaaactt accactacta cagcctgccg cttgctgcta aatcactggg cgatatcacc
     2221 cgtctaccca agtcactcaa agttttgctc gaaaacctgc tgcgctggca ggatggtaac
     2281 tcggttaccg aagaggatat ccacgcgctg gcaggatggc tgaaaaatgc ccatgctgac
     2341 cgtgaaattg cctaccgccc ggcaagggtg ctgatgcagg actttaccgg cgtacctgcc
     2401 gttgttgatc tggcggcaat gcgcgaagcg gttaaacgcc tcggcggcga tactgcaaag
     2461 gttaacccgc tctcaccggt cgacctggtc attgaccact cagtgaccgt cgatcgtttt
     2521 ggtgatgatg aggcatttga agaaaacgta cgcctggaaa tggagcgcaa ccacgaacgt
     2581 tatgtgttcc tgaaatgggg aaagcaagcg ttcagtcggt ttagcgtcgt gccgccaggc
     2641 acaggcattt gccatcaggt taacctcgaa tatctcggca aagcagtgtg gagtgaattg
     2701 caggacggtg aatggattgc ttatccggat acactcgttg gtactgactc gcacaccact
     2761 atgatcaacg gccttggcgt gctggggtgg ggcgtgggtg ggatcgaagc agaagccgca
     2821 atgttaggcc agccggtttc catgcttatc ccggacgtag tgggctttaa acttaccggt
     2881 aaattacgtg aaggtattac cgccacagac ctggttctca ctgttaccca aatgctgcgc
     2941 aaacatggcg tggtggggaa attcgtcgaa ttttatggtg atggtctgga ttcactaccg
     3001 ctggcggatc gcgccaccat tgccaatatg tcgccagaat atggtgccac ctgtggcttc
     3061 ttcccaatcg atgctgtaac cctcgattac atgcgtttaa gcgggcgcag cgaagatcag
     3121 gttgagttgg tcgaaaaata tgccaaagcg cagggcatgt ggcgtaaccc gggcgatgaa
     3181 ccgattttta ccagtacgtt agaactggat atgaatgacg ttgaagcgag cctggcaggg
     3241 ccaaaacgcc cacaggatcg cgttgcactg cccgatgtac caaaagcatt tgccgccagt
     3301 aacgaactgg aagtgaatgc cacgcataaa gatcgccagc cggtcgatta tgttatgaac
     3361 ggacatcagt atcagttacc tgatggcgct gtggtcattg ctgcgataac ctcgtgcacc
     3421 aacacctcta acccaagtgt gctgatggcc gcaggcttgc tggcgaaaaa agccgtaact
     3481 ctgggccgct gcccgatcct atcgaaacgg caatcaaaaa aggcgattta accgtcggtg
     3541 cggtgctgtc cggcaaccgt aactttgaag gccgtatcca tccgctggtt aaaactaact
     3601 ggctggcctc gccgccgctg gtggttgcct atgcgctggc gggaaatatg aatatcaacc
     3661 tggctgctga gcctattggt catgatcgta aaggcgaccc ggtttatctg aaagatatct
     3721 ggccatcggc acaagaaatt gcccgtgcgg tagaacaagt ctccacagaa atgttccgta
     3781 aagagtacgc agaagttttt gaaggcacag cagagtggaa ggaaattaac gtcacacgat
     3841 ccgataccta cggttggcag gaggattcaa cctatattcg cttatcgcct ttctttgatg
     3901 aaatgcaggc aacaccagca cctgtggaag atattcacgg tgcgcggatc ctcgcaatgc
     3961 tgggggattc agtcaccact gaccatatct ctccggcggg cagtattaag cccgacagcc
     4021 cggcgggtcg atatctacaa ggtcggggtg ttgagcgaaa agactttaac tcctacggtt
     4081 cgcggcgtgg taaccatgaa gtgatgatgc gcggcacctt cgccaatatt cgcatccgta
     4141 atgaaatggt gcctggcgtt gaagggggga tgacgcggca tttacctgac agcgatgttg
     4201 tctctatcta tgatgccgcg atgcgctata agcaggagca aacgccgctg gcggtgattg
     4261 ccgggaaaga gtatggatca ggctccagcc gtgactggac ggcaaaaggt ccgcgtctgc
     4321 ttggtattcg tgtggtgatt gccgaatcgt ttgaacgaat tcaccgttcg aatttaattg
     4381 gcatgggcat cttgccgctg gaatttccgc aaggcgtgac gcgtaaaacg ttagggctaa
     4441 ccggggaaga gaagattgat attggcgacc tgcaaaatct acaacccggc gcgacggttc
     4501 cggtgacgct tacgcgcgcg gatggtagcc aggaagtcgt accctgccgt tgtcgtatcg
     4561 acaccgcgac ggagttgacc tactaccaga acgacggcat tttgcattat gtcattcgta
     4621 atatgctgaa gtaacaagta tttgcttgcc ggttattttg cttccggcaa gcaaattaat
     4681 tccacaatgc gagagggtta tttgttcagc aaatgaccca ttttctcggc tttggtatcg
     4741 agataatgtt cgttattggg gttacgacct acaatcaatg gtacgcgttc aacaatatta
     4801 atccctgctt cggtcagaat ttcgactttt ttcgggttat tggttaacaa gcggacttca
     4861 ttgacgccaa ggagtttgaa catatcagcg caaagagtga agtcgcgctc atcagcggcg
     4921 aagcctaact ggtggttagc ctctacggta tcgtaacctt gatcctgcag tgcgtaagcg
     4981 cggattttat tcagcagacc aatgttacga ccttcctgac ggtgatacag caaaatacca
     5041 cggccttcct cggcaatttg cgtcaatgcc gcttcgagct ggaagccaca atcgcagcgc
     5101 aagctgaaca gggcgtcacc ggtcagacat tcggaatgga cgcgcgcaag taccggggta
     5161 tgcccggaaa tatcgccata gactagcgcg acatgatcgt gtccggttgc cagttcttca
     5221 aatcccacca tcaggaaatc gccccatggg gttggcagtt tggcttctgc cacacgttta
     5281 agctgcatga aattctccag ataatgctgg ttctgtattg gcttattttg ccataacgag
     5341 aaggggttca cctaatcacg acgcgtcgat cgttcacgga atggcacaaa tctgtcaatt
     5401 tttcctggaa ctggcgtttt cagttatgat tgtgggactt atcaaaaagg agaggccatg
     5461 cgttcgattg ccagacgtac cgcagtggga gctgcactat tgcttgtcat gccagtagcc
     5521 gtatggattt ctggctggcg ttggcaacct ggagaacaaa gttggctact aaaagcggct
     5581 ttttgggtta ctgaaactgt cacccagccc tggggcgtca ttacacattt gattttattc
     5641 ggctggtttc tctggtgtct gcgttttcgc attaaggctg cctttgtatt atttgccatt
     5701 ctggcggccg caatccttgt gggacaaggc gttaaatcct ggatcaaaga caaagtccag
     5761 gaaccacgac cttttgttat ctggctggaa aaaacacatc atattccggt tgatgagttc
     5821 tacactttaa agcgagcaga acgcggaaat ctagtgaaag aacagttggc tgaagagaaa
     5881 aatatcccac aatatttgcg ttcacactgg cagaaagaga cggggtttgc ctttccttcc
     5941 ggtcacacga tgtttgctgc cagttgggca ctgctggccg ttggtttgct gtggccgcgt
     6001 cggcgaacgt taaccattgc tatcttgctg gtctgggcaa cgggagtcat gggaagccgc
     6061 ctgctgctcg ggatgcattg gccacgcgat ctggtagtag ctacgttgat ttcgtgggcg
     6121 ctggtggcgg tggcaacgtg gcttgcgcaa cgaatttgtg ggccattaac accacctgcg
     6181 gaagaaaatc gcgaaatagc gcaacgagaa caagaaagtt aacgctggtt gattttccga
     6241 atttagccct taaatcatca acaatgcgcg tggatgccat ttcgcagacg gcgcgaaaat
     6301 ggtactttaa agggctattg cggtaagttg accataattt attcgctcta accacataac
     6361 gggaagtaat gtgaaatatt tactcatttt cttactggtg ttagcgatct tcgtgatttc
     6421 ggtcacgttg ggtgcgcaga acgatcaaca ggtgacgttt aattatctgt tagcgcaagg
     6481 ggagtaccgt atttccacat tgctggcggt attgtttgct gcggggtttg ctatcggttg
     6541 gttgatttgt ggcctgttct ggctgcgagt tcgtgtttcc ctggcgcgcg ctgaacgtaa
     6601 aataaagcga ctggaaaacc agctttcacc cgcgactgac gtggctgtag tgccgcactc
     6661 gtcagcggcg aaggaataac tttctatgct ggagttgttg tttctgcttt tgcctgtagc
     6721 cgctgcctat ggctggtata tgggccgcag aagtgcgcaa caaaacaagc aagatgaagc
     6781 caaccgcttg tcgcgtgatt acgtagcggg ggttaacttc ctgcttagta atcaacagga
     6841 taaagcggta gacctgtttc tcgatatgct taaagaggat acaggcaccg ttgaagccca
     6901 ccttacgctc ggaaacctgt tccgttcgcg tggcgaagtt gatcgcgcta ttcgcatcca
     6961 tcagacccta atggaaagcg cctcgctgac ctatgaacag cgtctgttgg cgattcaaca
     7021 actagggcgt gattacatgg ccgccgggtt atacgaccgc gcggaagaca tgttcaatca
     7081 gctgaccgat gaaactgact tccgcattgg cgctctgcaa cagttgctac aaatctacca
     7141 ggctaccagt gagtggcaga aagcaattga tgttgccgaa cgcctggtga agctgggtaa
     7201 agataaacag cgcgtcgaaa ttgcccattt ctactgtgag ttagccctgc agcatatggc
     7261 cagcgacgat ctcgatcgtg ccatgacctt gctaaaaaaa ggggcggcgg cagataaaaa
     7321 cagcgcccgc gtatccatca tgatgggacg cgtgtttatg gcgaaaggag aatacgccaa
     7381 agccgtcgaa agtttgcaac gcgtgatatc ccaggacaga gaactggtca gcgaaacgct
     7441 ggaaatgttg caaacctgct atcagcagtt gggtaaaact gccgaatggg cagaattcct
     7501 gcaacgcgcg gtggaagaga acaccggtgc cgatgctgaa ttgatgcttg ctgatatcat
     7561 cgaagcgcgc gacggtagtg aggccgcaca ggtctatatt acgcgccagc ttcagcgtca
     7621 tccgaccatg cgtgtgttcc ataagttaat ggattaccac ttaaatgaag cggaagaagg
     7681 gcgtgccaaa gagagcctga tggtgctgcg tgacatggtt ggcgaaaagg tacgtagtaa
     7741 gcctcgttat cgctgccaga aatgtggttt taccgcatac accctctact ggcattgtcc
     7801 gtcttgtcgg gcctggtcaa ccattaaacc gattcgcggt cttgatggcc tgtaattttt
     7861 aaaaaaatcc gactttagtt acaacatact agttattgat gttccattgt gctccggcaa
     7921 cgacggagca gaaaaagcct gccaggggaa aaatcgcaac tgttaatttt ttatttccac
     7981 gggtagaatg ctcgccgttt acctgtttcg cgccacttcc ggtgcccatc atcaagaagg
     8041 tctggtcatg acgttaactg cttcatcttc ttcccgcgct gttacgaatt ctcctgtggt
     8101 tgttgccctt gattatcata atcgtgatga cgcgctgtcc tttgtcgaca agatcgaccc
     8161 acgcgattgt cgtctgaagg tcggcaaaga gatgtttaca ttgtttgggc cacagtttgt
     8221 gcgcgaactt caacagcgtg gttttgatat ctttcttgac ctgaaattcc acgatattcc
     8281 taacactgca gcgcacgctg tcgctgctgc agctgactta ggcgtgtgga tggtgaatgt
     8341 tcatgcctct ggtggggcgc gtatgatgac cgcagcgcgt gaggcactgg ttccgtttgg
     8401 caaagatgca ccgcttttga ttgctgtaac agtgttgacc agcatggaag ctagcgacct
     8461 ggccgatctt ggcgtgacac tgtcacctgc agattatgca gaacgtctgg cggcactgac
     8521 gcaaaaatgt ggccttgatg gtgtggtgtg ttctgctcag gaagctgtgc gctttaaaca
     8581 ggtattcggt caggagttca aactggttac accgggcatt cgtccgcagg ggagtgatgc
     8641 tggtgaccag cgccgcatta tgacgccaga acaggcgttg tcggctggtg ttgattatat
     8701 ggcgattggt cgcccggtaa cgcaatcggt agatccagcg caaacactga aagcgatcaa
     8761 cgcctcttta cagcggagtg catgatgagt gattccaaca gccgtctggt ctactcaacg
     8821 gaaaccggac gtattgatga gccaaaagcg gccccagtac gccctaaagg cgatggtgtg
     8881 gtgcgtattc agcgtcagac cagtggacgt aaaggtaagg gcgtttgcct gattaccggt
     8941 atcgatctcg atgatgccga actgacaaaa cttgcagcgg aactgaagaa aaaatgcggc
     9001 tgcggcggag cagttaaaga tggagttatt gaaatccagg gcgataagcg tgatttatta
     9061 aaatcactac ttgaagcgaa agggatgaag gtaaaactcg caggcggtta acataaaaag
     9121 ccacggatat atccgtggct ttcgaatatt ttactgtgtg ta
//
LOCUS       DADMHM010000158         9157 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.161, whole genome shotgun sequence.
ACCESSION   DADMHM010000158 DADMHM010000000
VERSION     DADMHM010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9157)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9157)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9157
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.161"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..445
                     /locus_tag="JN125_003190"
     CDS             <1..445
                     /locus_tag="JN125_003190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005105555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HAY8872867.1"
                     /translation="VLSLKWEQIGNDGIFIQQGKTGKKQIKAWSPRLQAAIEKAKQLP
                     TSAYVISNQYGNRYMYKGFNEMWVEARNRAGKISGILTDFTFHDLKAKGISDYEGSSR
                     DKQLFSGHKTEGQVLIYDRKVKVSPTLDVPLPENIPSNSTCDFCH"
     gene            complement(473..562)
                     /locus_tag="JN125_003191"
     tRNA            complement(473..562)
                     /locus_tag="JN125_003191"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(526..528),aa:Ser,seq:cga)
     gene            656..1453
                     /gene="mtfA"
                     /locus_tag="JN125_003192"
     CDS             656..1453
                     /gene="mtfA"
                     /locus_tag="JN125_003192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310801.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DgsA anti-repressor MtfA"
                     /protein_id="HAY8872868.1"
                     /translation="MIKWPWKVQESAHQTALPWQEALSIPLLTCLTEQEQSKLVTLAE
                     RFLQQKRLVPLQGFELDSLRSCRIALLFCLPVLELGLEWLDGFHEVLIYPAPFVVDDE
                     WEDDIGLVHNQRIVQSGQSWQQGPIVLNWLDIQDSFDASGFNLIIHEVAHKLDTRNGD
                     RASGVPFIPLREVAGWEHDLHAAMNNIQEEIELVGENAASIDAYAASDPAECFAVLSE
                     YFFSAPELFAPRFPSLWQRFCQFYQQDPLQRLHHANDTDSFSATNVH"
     gene            1554..1629
                     /locus_tag="JN125_003193"
     tRNA            1554..1629
                     /locus_tag="JN125_003193"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1587..1589,aa:Asn,seq:gtt)
     gene            1943..8699
                     /locus_tag="JN125_003194"
                     /pseudo
     CDS             1943..8699
                     /locus_tag="JN125_003194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416485.4"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter adhesin-like protein
                     YeeJ"
BASE COUNT         2602 a         2245 c         2242 g         2068 t
ORIGIN      
        1 tgtgttatcg ctgaaatggg agcagattgg aaacgacggg atctttatcc agcaagggaa
       61 aacaggaaaa aaacagataa aagcatggag tccacgatta caggcggcga tcgaaaaagc
      121 aaaacagtta ccaacatccg cctatgtaat cagcaatcaa tacggcaacc gatatatgta
      181 caaaggcttt aacgaaatgt gggtagaagc aagaaatcgc gcaggcaaaa tttcaggtat
      241 tttaaccgac ttcacctttc atgatctgaa ggcgaaagga atttcagact atgaaggaag
      301 cagtcgggat aagcaacttt tctctggtca caaaaccgag gggcaagtgc taatctatga
      361 caggaaggtt aaagtttcac cgacacttga tgtcccgtta cctgaaaata ttccaagtaa
      421 ttccacgtgt gatttttgtc actgacttaa tgatgtataa gtgattgaat tttggcggag
      481 agagggggat ttgaaccccc ggtggagttg cccccactcc ggttttcgag accggtccgt
      541 tcagccgctc cggcatctct ccgttcagat ggttgccatg atgccaggaa atttggcatt
      601 ttaacagtcc ctgtccgtgc aattttgttc aagtgacgag tttgcgagca aaacgatgat
      661 taagtggccc tggaaagtac aagaatcagc acatcaaact gcccttccct ggcaggaagc
      721 actatcgatc ccccttttaa cgtgtctgac ggaacaggaa caaagcaaat tagtcactct
      781 tgccgaacgt tttttacagc aaaagcggct tgttccttta cagggctttg aactggattc
      841 attaagaagc tgccggatag cacttctatt ttgcctaccc gttctggagt taggactgga
      901 atggctggat ggttttcatg aagtcttaat ttatcctgcg ccatttgtgg tcgatgatga
      961 atgggaagac gatatcggtc tggtgcataa ccaacgtatt gttcagtcag gtcagagctg
     1021 gcagcaaggg cctatcgttt tgaactggtt ggatatacaa gattcttttg atgcttctgg
     1081 ttttaacctg attattcatg aagtcgctca taagctggac acccgtaacg gcgatcgcgc
     1141 cagcggagtt ccctttattc cgttgcgtga ggttgctggc tgggaacacg atcttcatgc
     1201 tgcaatgaac aacattcagg aagaaatcga attggttggc gagaatgcgg cgagcattga
     1261 tgcttatgca gccagcgatc ctgctgaatg ttttgccgta ctttctgaat atttctttag
     1321 cgccccagaa ctttttgctc ctcgtttccc ttcattgtgg caacgtttct gccaatttta
     1381 tcaacaagat cctttgcaga gactgcatca cgctaatgat acagactcgt tttcggcgac
     1441 gaatgttcat taattaacaa ctttgcagat taattaacca attgaaatga cttatgaaat
     1501 ttagtgttga cagacaaggt accgctaagt aatatgcgcc ccgttcacac gattcctctg
     1561 tagttcagtc ggtagaacgg cggactgtta atccgtatgt cactggttcg agtccagtca
     1621 gaggagccaa attctaaaaa ttcgcttttt tagcgcaatg tcactgacct tagttgaaca
     1681 ttgtttttta acggatagcg ggtttttaac atcttaagcg ccctcgacct ttatggttga
     1741 tggcgttttg ctatgaacgc catcaccatt ttcccctaga ttataaaact tgagttattc
     1801 agtagtctcc cctcttgcaa ctcacaccca aaactgccta acgaaaagtt attaattttc
     1861 aatcatattg ctatcagtat ttacattttt tcgctgtgct agaaagggcg catttatgtt
     1921 agctcgttca gggaaggtaa gcatggctac gaagaagaga agtggagaag aaataaatga
     1981 ccgacaaata ttatgcggga tgggaattaa actacgccgc ttaactgcgg gtatctgtct
     2041 gataactcaa cttgcgttcc ctatggctgc ggcagcacaa ggtgtggtaa acgccgcaac
     2101 ccaacaacca gttcctgcac aaattgccat tgcaaatgcc aatacggtgc cctacaccct
     2161 tggagcgctg gaatcggccc aaagcgttac cgaacgtttc ggtatttcgg tggctgagtt
     2221 acgcaaactc aaccagtttc gtacgtttgc tcgaggtttt aataatgtcc gccagggtga
     2281 tgaactggat gtcccggcac aagttagtga aaaaaaatta accccgccgc cgggtaatag
     2341 cagtgacaac ctcgagcaac agatagccag tacttcacag caaatcgggt ctctgctcgc
     2401 cgaagatatg aacagcgagc aagcggcaaa tatggcgcgt ggatgggcct cttctcaggc
     2461 ttcaggcgca atgacagact ggttaagccg cttcggtacc gcaagaatca cgctgggcgt
     2521 ggatgaagat tttagcctga agaactccca gttcgatttt ctccatccgt ggtatgaaac
     2581 gcctgataat ctctttttca gtcagcatac tctccatcgt actgacgagc gtacgcagat
     2641 taacaacggc ttaggttggc gtcatttcac tcccacatgg atgtcaggca tcaacttctt
     2701 tttcgaccac gatcttagcc gttaccactc ccgcgccggc attggcgcgg agtactggcg
     2761 cgactatcta aaattaagca gtaacggcta tttgcgactg accaactggc gcagcgcacc
     2821 tgaactggac aacgattatg aagcacgccc ggccaatggc tgggatgtac gcgcagaaag
     2881 ctggctaccc gcctggccgc accttggcgg taaactggtc tatgaacagt attatggcga
     2941 tgaagtggcc ctgttcgata aagacgatcg gcaaagtaat cctcatgcca taaccgctgg
     3001 acttaactat acccccttcc cgctgatgac cttcagcgcg gagcaacgcc agggtaaaca
     3061 gggcgaaaat gacacccgtt ttgccgtcga ttttacctgg caacctggca gcgcaatgca
     3121 gaaacagctt gacccgaatg aagtcgctgc acggcgtagc cttgcaggca gccgttatga
     3181 tctggtggat cgcaacaaca atatcgttct ggaatatcgc aaaaaagaac tggttcgcct
     3241 gaccctgaca gaccccgtga cagggaagtc aggagaagtg aaatcactgg tttcgtcgct
     3301 acaaaccaaa tatgccctga aaggctataa cgtcgaagcc accgcactgg aagctgccgg
     3361 tggcgaagtg gtcacaacgg gtaaagatat tctggttacc ctgccggctt accggttcac
     3421 cagtacgcca gaaaccgata acacctggcc gattgaagtc accgctgaag atgtcaaagg
     3481 caatttgttc gaatcgtgaa cagagcatgg tagccgttca ggcacctacg ttaagccaga
     3541 aagattcctc ggtatcgtta agtacccaga cgttgagcgc ggattcccat tcaaccgcca
     3601 cactgacttt tattgcgcat gatgcagcag gtaatcctgt tatcgggctg gtgctctcga
     3661 cgcgtcacga aggtgttcag gacatcaccc tttctgactg gaaagataat ggtgacggaa
     3721 gctataccca gatcctgacc acaggtgcga tgtctggcac gctgacgctt atgccacagc
     3781 tgaacggtgt ggatgcggct aaagcccccg ccgtggtgaa tatcatttct gtttcgtcat
     3841 ctcggactca ctcgtcaatt aagattgata aggaccgtta tctctccggc aatcctatcg
     3901 aggtaacggt agaactgaga gatgaaaatg acaaacctgt taaggagcaa aaacagcaac
     3961 tgaataccgc agtcagcatc gacaatgtga aacctggtgt cactacagac tggaaagaaa
     4021 ccgcagatgg cgtctataag gcaacctata ccgcctatac caaaggcagt gggcttactg
     4081 cgaagctatt aatgcaaaac tggaatgaag atttacatac cgctggattt atcatcgacg
     4141 ccaacccgca gtcagcgaaa attgcgacat tatctgccag caataatggt gtgctcgcca
     4201 atgagaatgc agcaaacacc gtctcggtca atgtcgctga tgaaggaagc aacccaatca
     4261 atgatcatac cgtcacgttt gcggtattaa gcggatcggc aacttccttt aacaatcaaa
     4321 acaccgcaaa aacggatgtt aatggcctgg cgactattga tctgaaaagt agtaagcagg
     4381 aagacaacac ggttgaagtc acccttgaaa atggcgtgaa acaaacgtta atcgtcagtt
     4441 ttgtcggcga ctcgagtacc gcacaggttg atctgcagaa gtcgaaaaat gaagtggtcg
     4501 ctgacggcaa tgacagcgcc acaatgaccg cgacagttcg ggatgcaaaa ggcaacctgc
     4561 tcaatgacgt caaggtcacc ttcaatgtta attcagcagc agcgaaactg agccaaaccg
     4621 aagtgaatag ccacgacggg atcgccacag ctacgctgac cagtttgaaa aatggtgatt
     4681 atacggttac ggcctctgtg agctctggtt ctcaggctaa tcaacaggtg aattttatcg
     4741 gtgatcaaag tactgcagcc ctgaccctca gtgtgccttc aggtgatatc accgtcacca
     4801 acacagctcc gcaacatatg actgcaacct tgcaggataa aaatggcaac ccactaaaag
     4861 ataaagaaat caccttctct atgccaaacg acgtcgcaag tcggttctcg attagcaacg
     4921 gcggaaaagg catgacggat agtaacgggg ttgcaatcgc ctccctgacc ggcacgttag
     4981 cgggcacgca tatgatcacg gctcgtctgg ctaacagcaa tgtcagcgat gcacagccaa
     5041 tgacgtttgt ggcggataaa gacagagcgg ttgtcgttct acaaacatcg aaagcggaaa
     5101 tcattgggaa tggcgtggat gagacgaccc tgacagcaac agtgaaagat ccttttgata
     5161 acgtggttaa aaatctgtca gtagtcttcc gcacctcccc cgcagacacg caactgagtc
     5221 tgaacgcgcg taatactaat gagaacggta ttgctgaagt tacccttaag ggcacggttt
     5281 tgggtgttca tacagccgaa gccatactgc ttaacggcaa cagagatacg aagatagtca
     5341 atattgcgcc cgatgccagc aacgcgcagg tcaccctgaa catccctgca caacaggtgg
     5401 tgacgaataa cagcgacagc gtgcagctga cggcgacggt gaaagatccg tcgaatcatc
     5461 cggtggcggg aataacggtg aacttcacca taccacagga cgtggcggca aactttaccc
     5521 ttgaaaataa cggtattgcc atcactcagg ctaatggcga agcgcatgtc accctcaaag
     5581 gcaaaaaagc gggcacgcat acggttaccg caacgctggg taacaataat gccagcgatg
     5641 cgcaaccagt caccttcgtg gcggataagg acagcgcggt tgtcgttctg caaacatcga
     5701 aagcggaaat cattgggaat ggcgtggatg agacgactct gacggcaaca gtgaaagatc
     5761 cttttgataa cgcagtaaaa gatctacagg tcaccttcag taccaacccc gcagatactc
     5821 aacttagtca gagcaaaagc aatactaacg acagtggtgt ggccgaagtt acctttaagg
     5881 gcacggtttt gggtgttcat acagccgaag ccacactgcc taacggcaac aacgatacga
     5941 agatagtcaa tattgcgccc gatgccagca acgcgcaggt tacgctgaac atccctgctc
     6001 aacaggtggt gacgaataac agcgacagcg tgcagctgac ggcgacggtg aaagatccgt
     6061 cgaatcatcc ggtggcggga ataacggtga atttcaccat gccacaggac gtggcggcaa
     6121 actttaccct cgaaaataac ggtattgcca tcacccaggc caatggggaa gcgcatgtca
     6181 cgctcaaagg taaaaaagcg ggtacgcata cggttaccgc aacgctgagt aataacaata
     6241 ccagtgattc acagccggta acgtttgtgg cggacaaaac ctcggctctg gttgttcttc
     6301 agatatcaaa aaatgagatc acaggtaatg gcgtagatag cgcaacgcta actgcaacag
     6361 tcaaagatca gttcgacaat gaggtgaaca atcttccggt aacattcagc acagcttctt
     6421 caggcctcac cctgacccca ggggaaagta ataccaatga gtctggcatc gcgcaggcca
     6481 ctctcgcagg cgttgccttt ggtgagcaga cggttactgc atcactggct aatactggtg
     6541 ccagcgacaa caaaactgtg cactttattg gcgacacaac ggcggcaaaa attatcgagt
     6601 tgacgcctga cccaggcagc ataatcgccg gtaccccaca gaacagcacc ggtagcgtaa
     6661 tcaccgctac agtcattgat aataatggct ttccggtgaa aggtgtgact gtgaacttca
     6721 ccagcaacgc agcgacagcc gaaatgacga atggcggcca agccgtaacg aacgaacagg
     6781 gtaaggctac cgtcacttat accaataccc gctcctcgat agaatcagga gcgagaccgg
     6841 ataccgttga ggccagtctg gaaaatggta gctccacgct tagcacatca attaatgtca
     6901 acgctgatgc gtctacggca catctcacct tgttacagtc acttcttgat acagtctccg
     6961 caggcgacac taccaatctg tatattgagg tgaaggataa ttacggcaac ggtgtacccc
     7021 agcaggaggt aaccctcagc gtttcaccaa gtgaaggcgt gactcccagt aataacgcta
     7081 tatatacgac caatcacgac ggcaattttt acgcaagctt taccgctaca aaagccgggg
     7141 tttatcaagt gacggcaacc ctcgaaaatg gcgattcgat acaacaaaca gtgacctatg
     7201 tgccgaacgt cgcgaatgcc gaaatcacgc tggcagcctc gaaggatccg gtgattgccg
     7261 acaataacga tctcacgaca ctaacagcaa cagtcgctga tacagagggc aatgcgatag
     7321 ccaacactga agtaacattt actctgccgg aagatgtgaa ggcgaacttc acgctgagcg
     7381 atggcggtaa agcgattact gatgctgaag gcaaagcgaa agtcacgctg aaaggtacaa
     7441 aagcaggcgc tcatactgtt acagcatcga tgactggcgg taagagtgag cagttggtgg
     7501 tgaactttat tgcggatacg ctcagtgcgc aggttaatct taacgttacc gaggacaact
     7561 ttatcgccaa taacgttggg atgaccacac ttcaggcaac agtgactgat ggaaacggca
     7621 acccgttagc caatgaggcg gtgacattca cgctaccggc agacgtgagc gcaagcttca
     7681 ctctcggaca aggcggttcc gccattactg atatcaacgg caaggctgaa gttacactga
     7741 gcggtacaaa atccggtacc taccccgtga cagttagcgt gaacaattat ggtgtcagtg
     7801 atacgaaaca ggtgactttg attgccgatg ctggtaccgc aacactagcc tccttaacct
     7861 ctgtatactc attcgtcgtc agcacgaccg agggcgcgac catgactgca agcgtcactg
     7921 acgctaacgg caacccggta gaaggcataa aagttaattt ccgcggaacc tccgtcacgc
     7981 taagcagcac cagcgttgaa acggatgatc agggtttcgc tgaaattctt gtgacaagca
     8041 ccgaagtcgg actgaaaaca gtttcagcct ctctgacaga taaacctact gaagtcatat
     8101 cgcgattact gaatgcaaaa gcagatatta attctgcaac gattaccagt ctggagatac
     8161 ctgaaggtca gctaatggtc gcacaagacg tagcagttaa agctcacgtc aacgaccagt
     8221 ttggcaaccc gattcttaat gaatctgtaa cattcagtgc agagccacca gagcacatga
     8281 ccatcagcca aaatattgtc tctactgata cgcatggtat agccgaggtc tccatgacgc
     8341 ccgaaagaaa cggttcgtat atggtgaaag catccctggc gaatggagcc tcacttgaga
     8401 aacaactgga ggctattgat gaaaaactga cactcacggc gtccagtccg cttatcggtg
     8461 tctatgcccc tacaggcact actctgacgg caacgctaac ctctgcaaat ggcactccag
     8521 tggagggtca ggtcatcaac tttagcgtaa cgccagaagg ggcgacgtta agtggcggaa
     8581 aagtgagaac taactcttca ggtcaggctc cggtcgttct gaccagcaat aaagtcggta
     8641 catatacggt gactgcatcg ttccataacg gcgtaacaat acagacacag acaaccgtga
     8701 aagtcactgg caactcaagc accgcacatg ttgctagctt tatcgctgat ccatcgacta
     8761 tcgccgccac caacagtgat ttaagtacct taaaggcaac ggttgaggat ggcagtggta
     8821 acctgatcga aggtctcact gtgtacttcg ccttaaaaag cggctctgcc acattaacgt
     8881 cattaacagc ggtgaccgat caaaacggaa tcgcgacaac aagcgtgaaa ggagcgatga
     8941 caggtagcgt cacggtaagc gcagtcacga ccgctggtgg aatgcaaaca gtagatataa
     9001 cgctggtggc aggcccggca gacgcctcgc agtccgtcct taagaaaaat cggtcctcac
     9061 tgaaagggga ctttaccgat agtgctgagc tacatcttgt tttgcacgat atatcaggca
     9121 atccgatcaa agtttctgaa gggatggaat ttgtgca
//
LOCUS       DADMHM010000159         9089 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.162, whole genome shotgun sequence.
ACCESSION   DADMHM010000159 DADMHM010000000
VERSION     DADMHM010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9089)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9089)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9089
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.162"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            146..511
                     /locus_tag="JN125_003195"
     CDS             146..511
                     /locus_tag="JN125_003195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001427183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HAY8872869.1"
                     /translation="MAELRTLQSRIKTLNTRRVNILKGEQRRVSGSARVSLKRHIWLR
                     DTGQCRLCGRVVDLCDSELDHRIALQFGGGNEETNLWTLCTECHRQKSAREAASDMPD
                     PTLPEVSGGSGREDDIIGL"
     gene            802..1365
                     /locus_tag="JN125_003196"
     CDS             802..1365
                     /locus_tag="JN125_003196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HAY8872870.1"
                     /translation="MLTTQKRKFALALMSGKNKTASAIAAGYSAKTARVKGSQLAKDP
                     EVLAFIARKQCETVEVDEVPVYRQKKSEQEDKPRRREAAAIPQPDENNPEMPPPAVMS
                     HGIEYMEDGLPDPVKAMGQILVENLSIDPKLALDAAWRLAQFTHHKKGDAGKKSAKGD
                     AAKKAANRFAVPPPPRLVVNNDNEGNG"
     gene            1362..3023
                     /locus_tag="JN125_003197"
     CDS             1362..3023
                     /locus_tag="JN125_003197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase large subunit"
                     /protein_id="HAY8872871.1"
                     /translation="MIPVWSTACPDWAERLKKGLSIIPAPIYPDQAAHALAIFKQLRI
                     VDAPGSPTFGESCAQWVFDLVAALFGSYDAQTGVRHIKEVFILIPKKNSKSTLAAGIM
                     MTALLLNWRQAAGYTILAPTVEVAANAFNPARDMVRRDDDLDDLCQVQTHIRTITHRV
                     TDTTLKVVAADPNTVSGIKSVGTLIDELWLFGKQYKAEDMLREAIGGLASRPEGFVVY
                     TTTQSNEPPAGVFRQKLQYARDVRDGKINDPHFLPVIFEHPPEMVESGAHLLMENLAM
                     VIPNLGYSVDEAFLYREYRKAREAGEETFRGFMSKHANVEIGLALRSDRWAGADFWEE
                     QGRCINLDDILRRADVVTVGIDGGGLDDLLGMYVIGRDRETREWLGWGHAWAHETAVV
                     RRKSEASRFQDLVACGDMTIVRRVGDDTAEVAEYVRRIHEAELLDHIGIDPSGVGQIL
                     DSLAEAGIPDGIVVGIRQGWKLGGAIKTTERKLAEGVLVHGDQPLMAWCVGNARVEPK
                     GNAILITKQASGRGKIDPLMALFNAVSLMSLNPEPKKKEYAVFFI"
     gene            3087..5023
                     /locus_tag="JN125_003198"
                     /pseudo
     CDS             3087..5023
                     /locus_tag="JN125_003198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309570.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
     gene            5068..5289
                     /locus_tag="JN125_003199"
     CDS             5068..5289
                     /locus_tag="JN125_003199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872872.1"
                     /translation="MAKIRYLQGTHDARAGDIRDVAQPCAEVLVRLGKAEYITVRRPA
                     GQKKKRDAEHGECGTFYSEPEKTRNQDVT"
     gene            5235..7555
                     /locus_tag="JN125_003200"
                     /pseudo
     CDS             5235..7555
                     /locus_tag="JN125_003200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001365916.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
     gene            7552..7878
                     /locus_tag="JN125_003201"
     CDS             7552..7878
                     /locus_tag="JN125_003201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage gp6-like head-tail connector protein"
                     /protein_id="HAY8872873.1"
                     /translation="MTALLTLEEIKAHLRVDHDADDDMLMDKVRQATAVLLAYIQGSR
                     DKVIREDGELIQGEALTRMKGAAMRLTGMLYRNPDLAEREELLQGELPFSVSVLIYDL
                     RCPTVL"
     gene            7888..8238
                     /locus_tag="JN125_003202"
     CDS             7888..8238
                     /locus_tag="JN125_003202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head closure protein"
                     /protein_id="HAY8872874.1"
                     /translation="MAISAGRLTQMISVLNPVLTRNAAGEMTEEWVSCGKIHADIRGR
                     SSRERMQSGAEMAQAEIRIWVRGQSGREITAASRLHVLSGPWRDRILNVVGLPVPDAT
                     GGRLEILCRLGGEK"
     gene            8235..8681
                     /locus_tag="JN125_003203"
     CDS             8235..8681
                     /locus_tag="JN125_003203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HAY8872875.1"
                     /translation="MIEILLDFSGLEDISRDLQLLSGAENNRVLREATRAGANVLKEE
                     VVSRTPVRRGKLRRNVVILSRRSRDGGMESGVHIRGVNPDTGNSDNTMKADNPRNAFY
                     WRFVEMGTVNMPPHPFVRPAFDVRSEQAAQVAIARMNRAIDEVLRR"
     gene            8678..9022
                     /locus_tag="JN125_003204"
     CDS             8678..9022
                     /locus_tag="JN125_003204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3168 domain-containing protein"
                     /protein_id="HAY8872876.1"
                     /translation="MTEADLYPHLAHLAGGQVYPYVAPLLDGRPSVALPWVVFSLILS
                     VSADVMGGQAESSVSVQIDVYAGTVTQARQIRQDAREAIMLLAPGSVSEMQDYIPENR
                     CYRATLEFQVTV"
BASE COUNT         1994 a         2262 c         2937 g         1896 t
ORIGIN      
        1 ccggaccctt tatgctcaag ggcgatgttg atctgttcaa tcatgtgatt ggggaaacgg
       61 atattgcggg ttgtggttct gcgggtacgg tttttcgatg acatatttat ttcctttact
      121 gattgccata tgacggggat tttacatggc tgagcttcgt acactccaga gcagaatcaa
      181 aacactgaat acccgacggg tgaatattct gaagggtgaa cagcgtcgtg tcagtggcag
      241 tgcacgtgtt tccctcaagc gtcatatctg gctcagggac accgggcagt gccgtctctg
      301 tggtcgtgtg gttgacctct gtgacagtga actcgatcac cgaattgcac ttcagttcgg
      361 tggtggtaat gaggagacga atctctggac gctctgtacc gaatgccatc gacaaaagtc
      421 tgctcgtgaa gcggcgagtg atatgccgga tccgacgctg ccggaggtgt ccggaggtag
      481 tggcagagag gacgacatca tcggactgta acccgacccc ggggggtatc atccggcgta
      541 aaaaacgatc gctttggaca ccgcgccccc tctcacgcag agaaaaaatt cccgtttcag
      601 gccagttaac atgttaactg gctgtccggg tatttttgcg gtttttatct ttattattca
      661 gtttgttgtg cgaaaaaaaa tgttaactgg ctttttcaga aaatgttaac caggcagcag
      721 ttaacatttg cggcatgaga cgccgggaaa aatgggctga accatacccg gctgagtgcg
      781 ttctggaccc gggaggaggc tgtgctgaca acgcaaaaac gaaaatttgc gctggcgctc
      841 atgtccggga aaaacaaaac agcgtcagcc attgccgccg gttattcggc gaagaccgcc
      901 agggttaaag gctcgcagct ggcaaaagat ccggaggtgc tcgcgtttat agcccgtaaa
      961 cagtgcgaaa cggtggaggt ggatgaggtt cctgtttacc ggcagaaaaa atcagagcag
     1021 gaggataaac cccgtcgccg tgaggcggct gcaataccac agccggacga aaacaatccg
     1081 gagatgccac cgcccgcggt gatgtctcat ggtattgaat atatggagga tggtcttccc
     1141 gatccggtga aagctatggg gcagatcctg gtggaaaacc tcagcattga tccgaaactg
     1201 gcactggatg cggcctggcg actggcgcag ttcacacacc ataaaaaagg cgatgccggt
     1261 aaaaaatcgg caaaaggtga tgccgcgaaa aaagcggcta accgttttgc ggtaccacca
     1321 ccaccacgac tggtggtgaa taacgataat gagggcaacg gatgatacct gtatggagca
     1381 cggcctgccc ggactgggca gagcgcctga aaaaggggct gtcgattatt ccggctccga
     1441 tttatccgga ccaggccgca catgccctgg cgatttttaa acaactgcgg attgtggatg
     1501 caccgggtag cccgacgttc ggggagtcct gtgcacagtg ggtgtttgac ctggtggcgg
     1561 ctctgtttgg ctcctacgat gcgcagaccg gtgtccgcca tatcaaggaa gtgttcattc
     1621 tgatacccaa aaaaaacagc aagtccacac tggccgccgg gatcatgatg acggcgctgt
     1681 tactgaactg gcggcaggcg gcgggttaca cgattctggc cccgactgtg gaggtggcag
     1741 ccaacgcctt caatcctgcc agggatatgg tacgacggga cgatgatctg gatgacctct
     1801 gtcaggtgca gacacatatc cggaccatca cccaccgggt gacggacacc accctgaagg
     1861 tggtggcagc cgatccgaat acggtgtccg gtatcaagtc cgtggggacg ctgattgatg
     1921 agttgtggct gtttggcaag cagtacaagg cggaggacat gttacgtgaa gccatcggcg
     1981 ggcttgcctc ccgcccggaa gggtttgtgg tgtatacgac cacccagtcg aatgaaccgc
     2041 ccgccggggt gttcagacaa aaactgcagt acgcccggga tgtgcgcgac ggcaaaatta
     2101 atgatccgca ctttctgccg gtgatatttg aacaccctcc tgaaatggtg gaaagcgggg
     2161 ctcacctgct gatggaaaac ctcgccatgg tcattccgaa tctcggctat tcagtggatg
     2221 aggcctttct gtaccgggag taccgtaaag cccgggaagc cggtgaagag acattccggg
     2281 ggttcatgtc aaaacacgcc aatgtggaaa ttggtcttgc cctgcgctct gaccgctggg
     2341 cgggggctga tttctgggaa gagcagggcc gttgtatcaa cctggacgat atcctgcgtc
     2401 gtgctgatgt ggtgacggtg gggattgacg gcggagggct ggatgatctg ctggggatgt
     2461 atgtgattgg gcgtgaccgg gagacccgcg aatggctggg ctggggccat gcctgggcgc
     2521 atgaaaccgc ggtggtccga cggaagagcg aggcgtcccg gtttcaggat cttgttgcct
     2581 gtggagatat gaccattgtc cggcgtgtcg gggatgacac ggcggaagtg gcggaatatg
     2641 tgcgtcgcat tcatgaggct gagttactgg accatatcgg tattgacccg tcaggggtgg
     2701 ggcagattct ggattcactg gcggaagccg ggatccccga cggaattgtg gtggggatac
     2761 gccagggctg gaaactgggc ggggccatta aaaccaccga gcgcaaactg gctgaagggg
     2821 tgctggtgca tggtgaccag cccctgatgg cctggtgtgt cggcaatgcc cgggtggagc
     2881 ctaaaggtaa cgccattctt atcaccaaac aggccagtgg acggggaaaa attgacccgc
     2941 tgatggcgct gttcaatgcg gtctccctga tgtcccttaa cccggaaccg aaaaagaaag
     3001 aatatgcggt ttttttcata taaccctgtt cacactgtaa ccatcacgaa ccgctccggc
     3061 ggttttttta ttttcaggag gctgatgtga ctcttaaacg ggcctgttcc ctgctgacgg
     3121 tgaaatcctt cagtgaggat gaatgggtga tcaccgggat tgcgtcaacg ccttctccgg
     3181 atcgggatgg tgacatcctg gagccggagg gcgcggagtt tggcagtgcg atcccgtttc
     3241 tctggcagca tgaccattcc cgcccggtgg ggcaatgtac ggtgcgccgg gtcagcgaag
     3301 ggctggaaat cacggcaaca ctggtgaagc ccgtaccgga tatgccgtcg caactggctg
     3361 cccggctgga tgaggtctgg gcggccatta agaccgggct ggtcaggggc tgtccgtggg
     3421 cttccgtccc catgaataca cctttctgga cggaggcgga ctgcattttc tgcgctggga
     3481 actgatggag gtgtctgccg tcaccgtgcc cgcgaatgcg gaatgcacca tccggaccat
     3541 taaatcttac gacagcccgt tttctgccgc gtccggcaac cggaaaccgg tggtgaaaat
     3601 cgcatcttct gccggcgctg cggcacagtc aacaaccgtt tttcataagg aaaagaccat
     3661 aatgaatatt ggcgaacaga ttaaaagttt tgaaaacaag cgtgtagcgc tggcagcctc
     3721 ccttgaggag gtcatgacca aagccgcaga ggaagggcgc acgctggatg tggaggagga
     3781 agagcattac gacaacaccg cagcggaaat ccgtcaggtg gatgcgcacc tgaagcgcct
     3841 gcgtgaactg gaagccggta aggccgccac ggcgcagccg gtgaaacagg ccggtaacgg
     3901 gaatgtggcc gcggtggctt ctgcgccggt gatccgtgtg gagcagaaac tggataaggg
     3961 gattggcttc gcccgctttg ccaaatcgct ggctgcggct aaaggcgtcc gatctgaagc
     4021 cctggaagtg gcccgtcgtc agtatccgga tgacagtcgt ctgcatcatg tcctgaaatc
     4081 ggcagtgggc gcggggacca ccacggatcc gcagtgggca ggcagcctgt ctgaatatca
     4141 ggaatacgca caggacttta ttgattacct gcgtccgcag accattatcg ggcgatttgg
     4201 tcagggcggg atccctgcac ttcgtcaggt gccgttcaat atccgtgtgc acgcccaggt
     4261 gtccggcggt gctgccggct gggtgggtga gggtaaggca aaacccctga cgaagtttga
     4321 ttttgaatcc atcaccttca gtcatgcgaa ggtgtcggcc attgcggtac tgacggaaga
     4381 gctgatccgt ttttccagtc cggcagctga tgcgctggtc cgtaatgcgc tggcagaagc
     4441 ggtggtggcg cgtctggaca cagactttgt ggacccgaaa aaagccgcag tggcagatgt
     4501 ctccccggcg tccatcaccc atgatgtgaa gggcaaggca tcaaccggta acccggatgc
     4561 ggatacagag gcggcgtttg gacagtttgt ggcagcaaac ctgcagccca ccggtgcggt
     4621 ctggctgatg tccagcacca atgccctggc gctgtccatg cgtaaaaata cgctgggtca
     4681 gaaggaatac ccggacatga ccctgctggg ggggaccttc caggggctgc cggtgattgt
     4741 ctcccagtac gtgggtgacc agctggtgct ggtgaatgcc ccggatattt atctggcgga
     4801 tgacggcggc gtggcagtgg atatgtcccg cgaggcatca ctggaaatgc agtctgagcc
     4861 gaccggcgac agtaccacgc cgtcgccggt ggagctggtt tccatgttcc agacaggcag
     4921 tgtggccatc cgtgcggagc gctggatcaa ctggcgtcgt cgccgtaccg cggcggtggc
     4981 ggtgatcacc ggtgtgaact acggcagtgc gtccggcggc tgagtctgat aaggaggacg
     5041 ggaggcgagc gcctcccgta acaggttatg gcaaagatcc gatatctgca gggcacgcat
     5101 gatgcccggg ccggggatat ccgtgatgtg gcacagccgt gcgcggaggt gctggttcgc
     5161 ctgggaaagg cggagtacat cacggtgcga cgtccggcag gtcagaaaaa gaaacgtgat
     5221 gcggagcatg gcgaatgtgg aaccttttac agcgaacccg aaaaaaccag aaatcaggac
     5281 gtgacgtaag agaggcgggc tggaccagcc tgtttcaggc ggtggctgag cccttttccg
     5341 gcgcctggca gcagggcgtg aaagccgatc cggaagccgt cctctccttt catgcggtgt
     5401 tttcgtgcat ttcgctgata tcccaggata tcgccaaaat gcggctgcgt cttatgcaga
     5461 cggatgcgca ggggatacgc agggaaactc gccgggggga tattgcccgc ctctgtcgtc
     5521 gtcccaacgc ccagcagaac cgcatccagt tttttgaact gtggctgaac gccaaactgc
     5581 gtcacggcaa tacggtggtg ctgaaaatcc gtaactcccg ggggcagatc aaagaactgc
     5641 gcattctgga ctggagccgg gttgaaccac tggtggcgga tgacggcgaa gtgttctacc
     5701 gcatcacgcc ggaccggaac tgcgggatca ctgaggcggt gacggtgcct gcccgggaag
     5761 tgatccacga ccggtttaac tgtttttttc atccgcttat agggttgccg ccggtgtatg
     5821 ccgccgggct gaccgccacg caggggcatc atattcagga aaattcgacg tattttttca
     5881 gaaatggcgg ggaaaacggc cattctgagc aacggggcaa aatacaaccc cacgacgttt
     5941 tcaccggtgg atgcgcagac ggtggaacaa ctgaagatga ccgctgaaat tgtctgttcg
     6001 gtgttccgtg tcccggccta caagattggc gtgggacaac cgccttccag tgacaacgtg
     6061 gaggcgctgg agcagcagta ttattcccag tgcctgcaga cgctgattga gtccattgaa
     6121 ctgttactgg atgaggcgct ggaaacgggg gaaaacgaga gtacagaatt tgatgtcacc
     6181 acgctgctga gaatggacag tgagcggcgc atgaaaacgc tgggggatgc cgtgaaaaat
     6241 acgcttctca cgcccaatga ggcccgtaaa cgggagaacc tgccgcccct ggccggcggt
     6301 gatgcactgt atcttcagca gcagaactac agtctggagg cactgtcccg tcgtgatgcc
     6361 cgtgaggatc cgttcgcgtc gaccgggaaa acggccttag cgcaaccgcc tgacggcgca
     6421 tctgacggta ataaggcaat cagtgaaaca gagcatgatg cggtgaaagc gatgttcagg
     6481 gggattctga aaaaatgaat gaacgtgaac tgtccattat tcgtgccctg ggagaagaat
     6541 tcgccacggt gctggcggat ttacagcgca catttgagga gaagatgagc gcgcaggcac
     6601 aagcgtttga agagaaactg gcttccctgt ccgctctgtt acagaagcat gtgacggtgg
     6661 atgaggttag ccctgttctg caggcgatgg tggatgacgc agtgggggcc attccgctac
     6721 cgcgtgatgg tcgcgattat gatccggaag tactgaagca ggcggtgaat gatgcggtcg
     6781 cgaaaatacc ggtgccggca gacggcaaaa gtatcacccc cgatgatgtg cgtccgatgc
     6841 ttgagcagat ggtgaaagag gctgtaagcc atattcctgt tccgcgtgat ggtcgtgact
     6901 acgatccgga agtactgaag caggcggtga atgatgcggt cgcaaatatt ccgcagccgg
     6961 cggacggtaa aagtctcacc ccggatgatg tgcgtccgat gcttgaacag atggtgacgg
     7021 aggctgtaag ccatatccct gttccgcgtg atggtcgtga ctacgatccg gatgttctgc
     7081 agaaggcggt tctggatgcg gtgagtgccc tgccggctcc gcaggacggg cgtgatgcca
     7141 cggctctgga aatactcccc gccattgacg ttcaaaaatc ctttccccgg ggcacgtatg
     7201 ccacacacca gggcggactc tggcgggcgt atgaaaaaac gcacgggatg cggggatggg
     7261 aatgcctggt tgacggggtg gcggatattg acgtcagcat gacgggtgag cggttgttct
     7321 ctgtggtggt ccggcagagc agtggccagc gtacggaaaa aacattttcc ctgccggtga
     7381 tgctctaccg cggtgtgttc agagccggtg aaacctacca ccccggcgat acggtgacgt
     7441 ggggggctcg ctgtggcact gcaacagtat gaccgaagat aaacccggag aagctcattc
     7501 atcagcctgg accctggctg caaaacgtgg gcaggatgca ggaggcggaa aatgacggca
     7561 ttactgacac tggaagagat caaggcacat ctgcgtgtcg accatgacgc ggatgatgac
     7621 atgctgatgg acaaggttcg tcaggctacc gccgtgctgc tggcctacat tcagggcagc
     7681 cgggataaag tgatccgtga ggacggtgaa ctgatccagg gcgaggcatt aacccggatg
     7741 aagggggctg ccatgcgact gaccgggatg ctgtaccgga atccggatct tgcggagcgg
     7801 gaagaactgc ttcaggggga gctgccgttt tctgtttccg tgctgattta cgatttgcgt
     7861 tgtccgacgg tgttatgagg agggggaatg gcaatatctg caggtcgtct gacacagatg
     7921 ataagtgttc tgaacccggt gttaacccgt aacgctgccg gagaaatgac ggaagaatgg
     7981 gtgtcatgcg ggaaaattca tgcggatatc cgaggcagga gcagccggga gcggatgcag
     8041 tccggtgcgg aaatggcgca ggcggaaatc cgcatctggg tgcgcggtca gtccggtcgg
     8101 gaaatcacgg cagcgtcacg acttcatgtg ctgagtggtc catggcgtga ccggatcctg
     8161 aacgttgtcg ggctgcccgt gccggatgcg accggcgggc gtctggaaat tctctgtcgg
     8221 ctgggagggg aaaaatgatc gaaatcctgc tggatttttc ggggctggag gacatcagcc
     8281 gcgatttgca gcttctgagt ggtgcggaaa ataaccgggt gctgcgtgag gcaacccgtg
     8341 cgggtgcgaa tgtgctgaaa gaagaagtgg tgtcacggac accggtacgc aggggaaaac
     8401 tgcgccgcaa tgtggtgatc ctttcccggc gctcccgcga tggcgggatg gaatccggtg
     8461 tccatatccg tggtgttaat ccggacaccg gtaacagcga taacaccatg aaggcggata
     8521 acccgcgcaa tgctttctac tggcggtttg tggaaatggg gaccgtgaat atgccaccgc
     8581 acccgtttgt gcgcccggcg tttgatgtgc gcagtgaaca ggcagctcag gtggcgattg
     8641 cgcggatgaa ccgggccatt gatgaggtac tgagacgatg acggaggcgg atttgtatcc
     8701 tcatctggcg catcttgccg gcgggcaggt gtacccgtat gtggcccccc tgctggatgg
     8761 caggccgtcg gtggcgcttc cgtgggtggt tttcagcctg attttatcgg tgtcagcgga
     8821 cgtgatgggc gggcaggcgg agtcctcagt gtcggtgcag atagacgttt atgccgggac
     8881 tgtgacgcag gcgcgtcaga tacgtcagga cgcccgtgaa gccataatgc tgctggcccc
     8941 gggatccgtc agtgaaatgc aggactatat tccggaaaac cgctgttacc gtgcaaccct
     9001 ggagtttcag gtcacggtgt gactttttct ttttttctac aaaaccatac cccgccgcgt
     9061 gcgggttttt tattatcagg aggcagaat
//
LOCUS       DADMHM010000160         9082 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.163, whole genome shotgun sequence.
ACCESSION   DADMHM010000160 DADMHM010000000
VERSION     DADMHM010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9082)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9082)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9082
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.163"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            13..766
                     /gene="yfaU"
                     /locus_tag="JN125_003205"
                     /pseudo
     CDS             13..766
                     /gene="yfaU"
                     /locus_tag="JN125_003205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311157.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="2-keto-3-deoxy-L-rhamnonate aldolase"
     gene            complement(807..1709)
                     /locus_tag="JN125_003206"
     CDS             complement(807..1709)
                     /locus_tag="JN125_003206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000156133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ISNCY family transposase"
                     /protein_id="HAY8872877.1"
                     /translation="MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQT
                     LRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCVIEHQSSAEKNMAFRLMRYATAA
                     MQRHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDIT
                     IVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQ
                     CGDTSRFTRFIEEIAERSPLQKERLMTIAERLRQEGHQIGWQEGMHEQAIKIALRMLE
                     QGIDRDQVLAATQLSEADLAANNH"
     gene            complement(1902..3092)
                     /gene="glpC"
                     /locus_tag="JN125_003207"
     CDS             complement(1902..3092)
                     /gene="glpC"
                     /locus_tag="JN125_003207"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic glycerol-3-phosphate dehydrogenase
                     subunit C"
                     /protein_id="HAY8872878.1"
                     /translation="MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLK
                     DGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMG
                     SVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSIAAQQAQYK
                     DQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQ
                     AITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWR
                     KLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRKIPGLELTVLDSQCCGIAG
                     TYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLA
                     QALA"
     gene            complement(3089..4348)
                     /gene="glpB"
                     /locus_tag="JN125_003208"
     CDS             complement(3089..4348)
                     /gene="glpB"
                     /locus_tag="JN125_003208"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708132.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase subunit GlpB"
                     /protein_id="HAY8872879.1"
                     /translation="MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGS
                     LDLLSHLPDGQPVADIHSGLESLRQQAPAHPYSLLGPQRVLDLACQAQALIAESGAQL
                     QGSVELAHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLR
                     ELDLSVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMI
                     LMPACFGLADDKLWRWLNEKLPCLLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPG
                     DEVKKVTCKNGVVNEIWTRNHADIPLRPHFAVLASGSFFSGGLVAERNGIREPILGLD
                     VLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGGFDPIA
                     QGCGGGVCAVSALHAAQQIAQRAGGQQ"
     gene            complement(4338..5966)
                     /gene="glpA"
                     /locus_tag="JN125_003209"
     CDS             complement(4338..5966)
                     /gene="glpA"
                     /locus_tag="JN125_003209"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic glycerol-3-phosphate dehydrogenase
                     subunit A"
                     /protein_id="HAY8872880.1"
                     /translation="MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIAT
                     GATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLS
                     FQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLD
                     AKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAE
                     YADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYN
                     EIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIV
                     LLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEP
                     AEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVEN
                     LNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKG
                     VQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL"
     gene            6239..7597
                     /gene="glpT"
                     /locus_tag="JN125_003210"
     CDS             6239..7597
                     /gene="glpT"
                     /locus_tag="JN125_003210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012131518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate transporter"
                     /protein_id="HAY8872881.1"
                     /translation="MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLV
                     RKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL
                     AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV
                     WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP
                     PIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS
                     PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI
                     ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG
                     YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQKRN
                     GG"
     gene            7602..8678
                     /gene="glpQ"
                     /locus_tag="JN125_003211"
     CDS             7602..8678
                     /gene="glpQ"
                     /locus_tag="JN125_003211"
                     /EC_number="3.1.4.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HAY8872882.1"
                     /translation="MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLP
                     EHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRY
                     YAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNH
                     STGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRI
                     KNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADG
                     IGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDAL
                     YNKAGVNGLFTDFPDKAVKFLNKE"
     gene            complement(8720..8962)
                     /locus_tag="JN125_003212"
                     /pseudo
     CDS             complement(8720..8962)
                     /locus_tag="JN125_003212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311149.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
BASE COUNT         2103 a         2239 c         2483 g         2257 t
ORIGIN      
        1 cgcaagggcg aagtgcaaat tggtctgtgg ttaagctcga ctacttctta tatggcagaa
       61 attgccgcta cttccggtta tgactggttg ctgattgacg gggagcacgc gccaaacacc
      121 attcaggatc tttatcacca gctacaggtg gtagcgccct atgccagcca acccgtgatc
      181 cgtccggtgg aaggcagtaa atcgctgatt aaacaagttc tggatattgg cgcgcaaact
      241 ctattgatcc cgatggtcga tactgccgat caggctcgtc aggtggcgtc tgccacgcgc
      301 tatcctccct acggtgagcg tggtgttggg gccagtgtgg cacgggctgc gcgctgggga
      361 cgcattgaga attacatggc gcaagtcaac gattcgcttt gtctgttagt gcaggtggaa
      421 agtaaaacgg cactggataa cctggacgag atcctcgacg tcgaagggat tgatggcgtg
      481 tttattggac cagcggatct ttctgcgtcg ttgggctacc cggataacgc cgggcacccg
      541 gaagtgcagc gaattattga aaccagcatt cggcggatcc gtgctgcggg taaagcggct
      601 ggttttctgg ctgtggctcc tgatatggcg cagcaatgcc tggcgtgggg agcgaacttt
      661 gtcgctgttg gcggttgaca cgatgctcta cagcgatgcc ctggatcaac gactggcgat
      721 gtttaaatca ggcaaaaatg ggccacgcat aaaaggtagt tattgatatc aaaggcccat
      781 ggggatcggc tgtgggcctg tgttaattag tggttattcg ctgccagatc ggcttcgctt
      841 agctgggtgg ccgcgagcac ctggtcacga tcaatgccct gttccagcat gcgcaaagca
      901 attttaatgg cttgttcatg cataccttcc tgccagccaa tttgatgccc ttcctgccgt
      961 agccgttcag caatagtcat taatctctcc ttttgtagtg gtgaacgttc ggcaatctcc
     1021 tcaataaaac gggtgaaacg ggaggtatcg ccgcattgca gcagataatt aaacagtgtt
     1081 tgtagctggc tgtcattagt gaagcctcta accaaaagcg tggtgatcct gtcgaccatg
     1141 ccgattaaat cgcggtcgcg aatatgcttt tgaatcagtt ccagcagagc tatacgccga
     1201 tgttgcatga tctcatcgtc aggtacgatg gtgatatcca ccaacggaaa agcttcggtg
     1261 tacaactgcc gggcaagttg cggatcgtca aactcatcca gccagttaag tgagtacggg
     1321 tagggcgatg tttcgccatg ataaaacagc aatggcacca ccagcggaac tctgtcatag
     1381 cctttatcca ggtgacgctg catggcggca gtggcatagc gcattagccg aaaagccata
     1441 ttcttttctg cagagctttg atgttcaatc acgcagtaga tatagccgtc accgtcgctg
     1501 gtttccacgg accacaaaac atccgagtag taagcgcgta aacttttttc aataaaacta
     1561 gtgggttcca ggcgtaaggt ttgcaggttg caaagcttgc gcagtggttc tggtaaatgt
     1621 atttcgagaa aatcccgtgc ggtttcgggt gtgaacataa aggttttaaa taccgcatca
     1681 tgcggggagg aggttgttga ttcggtcatg gttgtccgtc acctgatatt tatgatgacg
     1741 cgacattacg gttatcccag gcctttgaca tctgccagtt tcagcctttg cgagacgttt
     1801 tcagaggaat tttcactgcg ttgcaacgca tacattgggc acggaatcgt gtacgcaaaa
     1861 atgcccggta accacatgct taccgggcat cagaaaggag tttaagccag cgcctgggcc
     1921 agtagcgtaa tcggatgttc gcagcgaaga cttgtggaca tctcaatctg ccatttacag
     1981 gtttcgcagt cggtgaccac cagatctgcg ccgctttctt ctatctggcg gaacagtggt
     2041 gcgccgatgg cttgtgaggt ggggtagttc tcttttttga aaccgtaagt acccgcaata
     2101 ccgcagcact gggaatccag caccgttaac tcaagccccg ggattttacg caacagctcc
     2161 agggtgtaga gcgtccagcc cattttttcc atatggcacg gagtgtgata aaccactttc
     2221 agcggcagcg gtttcagcgg taacgttttg ccttcgtcca gcttgcgcca cagccagcgg
     2281 gttgccagtt cgatatgatc gcgcaagcct ttgttgtcga cattcagcac ttccgggtat
     2341 tcgtcgcgca gggcaaatgt acaggttgag gaggtggcaa tcaccggaat gccttttact
     2401 cccacagctt cgcggatcga ctctacattc gtaattgcct gtttgcgtgc tttatcggta
     2461 aagccgttgg cgattagcgg tacgccgcag catttttctt tgctgagcag ttgtacaccg
     2521 gtacccattg cgttgagcac tttaattaaa tctttaccta actgcggatg gttgtagtta
     2581 acgaagcagc cgtgaaagaa agcgacctgg tctttatatt gtgcttgctg agccgctatg
     2641 ctgcgatacc agcgacggaa cgtgccgaag gagtatttcg gtagcgtgcg acgatgatcg
     2701 atttttaacg ccgcatcaag cagctgccgc accggtttca gcgaggtagc ggtgttgacg
     2761 attggtgcga acggcgtgga aacgctaccc atcaggtcgg tatgactcaa cacaaaatta
     2821 cgcagcgacg ggcgcgtggt gtcatatttt gcccgcgcgc gctggataat atcgccaatc
     2881 ttcacatcgg acgggcaggc gacttcacaa cgtttgcagt tgatgcaata tttcagcgcc
     2941 tcgtcataca gtgcgccatc tttcaaacgc agacgctcgc catccggccc ggcttgtttt
     3001 ggccctggat aaccgggatt cacccggctc accgggcagg cggtggtgca gacggtgcac
     3061 ttaatgcagt tttcgaagct ggtgtcgttc attgttggcc tcctgcgcgt tgggcaatct
     3121 gttgagcggc atgtaaagca ctgacggcac aaacaccgcc gccgcatccc tgggcgatgg
     3181 gatcaaatcc gcccagcacc gaaccgatgg caaacaggtt ctcaatggtt tgccctgcct
     3241 gcgacgggcg tagcgtctca tcagtggtta caccgaactg ctgccacggt tgcggcgcaa
     3301 aaaaatcgcc cttataccat tcaccccgcg tggcggtttg tagcacatca aggccgagaa
     3361 tcggctcgcg aatgccgtta cgttccgcta ccagtccgcc actaaagaaa ctgccgctgg
     3421 cgagaaccgc gaaatgtgga cgtagcggaa tatcggcgtg attgcgggtc cagatttcat
     3481 tcactacgcc atttttacag gtcacttttt tcacttcatc gcccggcatc cacacgccac
     3541 cctggcgcac aaactggcgc tgtaactggt tttgcagacg aatgcccagc acggaaggcg
     3601 gcagcgttgg caaaagcatc agtaaacaag gtagtttttc attcaaccaa cgccacagtt
     3661 tgtcatcggc caggccgaag caggcaggca tcaggatcat ttcgcaggta ttggcgacag
     3721 gaataagcgc atcaagtaac agcggccagt tttcttcatt atcaaggaaa cgggcgatat
     3781 tcacagcgcg aaattcggtg gcgttattgc gcaggacatc cagttccggc agctctattt
     3841 ctgcggtttc aaccgaaaga tccagttcgc gcaacgaagc cgccgcaaga tgcgcctgaa
     3901 aatccatcag gccgcttatc ccgaccacac atattttctt cgcgggcaac ggccagacgg
     3961 ggacttctgg tgaacttagc caggtagagc gcagagtgcc gagcggcgta atccgctggt
     4021 gagccagttc tacgctgccc tgcaattgcg caccgctttc agcgattaat gcctgcgcct
     4081 ggcaagcgag atcgagcacg cgttgtggcc cgagaagaga gtaaggatgt gcaggtgcct
     4141 gctgacgcaa agattccagt ccactgtgaa tgtctgccac gggttgacca tctggcagat
     4201 ggctcagcaa atccagcgaa ccggatgaga aatgcaacgc gctttgacca cgcgtgacaa
     4261 tggcacagcg caggccgtgt ttttgcagtt gcaggccaca gagtaatccg gcgaggccgc
     4321 cgcccataat gacagtatca aagcgcatct ttctgctcct tctccagacc acacagtccc
     4381 tgataaaccc agcgggtaaa ttcgctttcg cgcagtgcgt ctccccaggc gatgggttgc
     4441 acgcctttcc agcgttcgtt aaggaaggtg gaaagttgct cgatagattg cgcggacgtc
     4501 gtgacgttaa accgttgcag cagtccggca gcgcggcagg cgcagagttc gccctggcag
     4561 gtgcccatcc ccacacgggt acgacggcgt aaatccagca ggctattaac gtttaaattt
     4621 tctaccgcgt actgcacttc acccgcagtt accgcttcgc actcacatac caggctacgg
     4681 tgcagacggc cttcgctcag ccaggcaggc gtgcgatcgc catgacgata aaccgcagaa
     4741 ccgcgcagcg gggcaggcag ggagatgact ttacgcaagg taacttcagc gggttcttgt
     4801 gaaccaggca gtgccagatc ggcagtcgta caggggcgcg tgttgcccag tttgcggcat
     4861 accgcgtcgg tagcccattc agccatcagc cgataggtca tcagtttgcc accggtgatg
     4921 gtgataaatc cgtccagacc atcgcgttca gcatggtcga gcagcacgat gccacggctg
     4981 acgttacgtc cgctcggatc gtcatcgctg gcaaccagcg ggcgcacgcc agaataggcc
     5041 cgcaaaatgc gcgttttcgc catcacgggg gccagttttt ccccttcacg cagcagaata
     5101 tcaacctctt ctgccgtcac tcgattatcg tcaatctcgt tgtaatcaat acgtaaagag
     5161 gtggtaccaa tcagcgaaat ggtatcgcca ggcaccagaa tatcggcgtc ggaaggttta
     5221 cggcagcggt tgatcacatg ctggttaatg cggtgatcca tgatcagcag cgatcctttc
     5281 gccgggaaca tgcgaatgcg cagatcggca tattcggcaa tgtgttgccc ccagatccca
     5341 gcggcattaa ccacgacagg tgcatgaagg gcctgagttt cgccggtgag atggttacgt
     5401 acacgaacac cgcacaccgt cgcgccttca cgaatcagcc ccgtgacttc atgagcggta
     5461 aggataacgg caccgtgttc tttggcatcc agcatgtttg ctgcggtcag acgaaatgga
     5521 tcaacggtgc catccggaac tttcaccgcg ccaatcagtg ccgggttaac ggcaggttcg
     5581 ataatgcgcg cttgctgcgg gtctatagct tctgcgctga tccctgcttc ttcgcaggcg
     5641 cgaataaaag tggcctggaa tgagaggtca tcttccggca gggtgataaa caggccgttg
     5701 gttggttcaa cgcagtgacg tgcaatgcgt ttcaggatct ggttttcact aatgcattcg
     5761 cgggccgatt ccgcatcggt taccgcatag cgcgcaccgc tgtgcagcag gccgtggtta
     5821 cgcccggtgg caccggttgc gatgtcgtgg cgctcaacca aaatcacgcg cagcccgcgc
     5881 agggcacagt cgcgggcaat cccggctccc gttgcgccgc cgccaatgat aatcacgtca
     5941 cttgattgcg agtcgcgagt tttcattgtt atccctctga agttcgtttt ttaccattta
     6001 gccatagtaa aaacatgaat tgtttgattt cgcgcatgtt cgctcataat tcgaaagtga
     6061 aacgtgattt catgcgtcat tttgaacatt ttgtaaatct tatttaataa tgtgtgcggc
     6121 aattcacatt taatttatga atgttttctt aacatcgcgg caactcaaga aacggcaggt
     6181 tctctcactg aatcaggctg ttaatcataa ataagaccac gggccacgga ggctatcaat
     6241 gttgagtatt tttaaaccag cgccacacaa agcgcgctta cctgctgcgg agatcgatcc
     6301 gacttatcgt cgattgcgct ggcaaatttt cttggggata ttctttggct atgcggctta
     6361 ctatttggtt cgtaagaact ttgcgcttgc tatgccttat ctggtcgagc agggattctc
     6421 tcgcggtgat ttaggtttcg cgctttcggg gatctcgatc gcttatggat tttcgaaatt
     6481 cataatgggt tcggtatcag atcgctcgaa tccgcgcgtt ttcctccccg caggtttgat
     6541 tctggcggcg gcagtgatgt tgtttatggg ctttgtgcca tgggcgacgt cgagcattgc
     6601 ggtgatgttt gtacttttgt tcctctgcgg ttggttccag gggatggggt ggccgccgtg
     6661 tggtcgtact atggtgcact ggtggtcgca gaaagaacgt ggcggcattg tgtcagtgtg
     6721 gaactgtgcg cacaacgttg gtggtggtat tccgccgctg ctgttcctgc tggggatggc
     6781 ctggttcaat gactggcatg cggcgctcta tatgcctgct ttctgcgcca ttctggtggc
     6841 attattcgcc tttgcgatga tgcgcgatac cccgcaatcc tgtggcttgc cgccgatcga
     6901 agagtacaaa aatgattatc cggacgacta taacgaaaaa gcggaacagg agctgacggc
     6961 gaagcaaatc ttcatgcagt acgtactgcc gaacaaactg ctgtggtata tcgccatcgc
     7021 caacgtgttc gtttatctgc tgcgttacgg catcctcgac tggtcaccga cttatctgaa
     7081 agaggttaag catttcgcgc tggataaatc ctcctgggcc tacttccttt atgaatatgc
     7141 aggtattccg ggcactctgc tgtgcggctg gatgtcggat aaagtcttcc gtggcaaccg
     7201 tggggcaacc ggcgttttct ttatgacact ggtgaccatc gcgactatcg tttactggat
     7261 gaatccggca ggtaacccaa ccgtcgatat gatttgtatg attgttatcg gcttcctgat
     7321 ctacggtcct gtgatgctga tcggtctgca tgcgctggaa ctggcaccga aaaaagcggc
     7381 aggtacggca gcgggcttta ccgggctgtt tggttacctg ggcggttcgg tggcggcgag
     7441 cgcgattgtt ggctacaccg tggacttctt cggctgggat ggcggcttta tggtaatgat
     7501 tggcggcagc attctggcgg ttatcttgtt gattgttgtg atgattggcg aaaaacgtcg
     7561 ccatgaacaa ttactacaaa aacgcaacgg aggctaatgg catgaaattg acgctgaaaa
     7621 accttagcat ggcgatcatg atgagcacta tagtcatggg aagcagtgca atggcggcgg
     7681 acagcaacga aaaaatagtc atcgcccatc gcggtgccag tggatatttg ccggagcata
     7741 cgctgccagc aaaagcgatg gcgtatgcgc agggagcgga ttatctggaa caggatttgg
     7801 tgatgaccaa agacgaccat ctggttgttc tgcatgacca ttatctcgat cgtgttactg
     7861 atgttgccga tcgtttcccg gatcgggcgc gcaaagacgg tcgttactac gcgatagatt
     7921 tcacgctgga tgaaattaag tcgttgaaat ttaccgaagg tttcgatatt gaaaacggta
     7981 aaaaagtgca gacttatccg gggcgtttcc caatgggtaa gtccgacttc cgggtgcaca
     8041 cctttgaaga agagattgaa tttgttcagg ggttaaatca ctctaccggg aaaaatatcg
     8101 gtatttatcc agaaatcaaa gcgccgtggt tccatcatca ggaagggaag gatattgcgg
     8161 caaaaacgct ggaagtgctg aagaaatatg gttacaccgg taaagacgat aaagtttatt
     8221 tgcaatgttt tgatgctgat gagctgaagc gtattaagaa tgagctggaa cccaaaatgg
     8281 gcatggagct caatctggta cagctgattg cctataccga ctggaatgaa acgcagcaga
     8341 aacagccgga tggaagctgg gttaattaca actacgactg gatgtttaag ccgggtgcca
     8401 tgaaacaggt ggcggaatat gcagatggta ttggtccgga ttaccatatg ttgattgagg
     8461 agacatcgca gccgggtaat atcaaactca ctggcatggt gcaagatgct cagcagaata
     8521 aactggtagt gcatccttat accgtgcggt cagataaact gcctgaatac actcctgatg
     8581 tgaatcagtt atatgatgct ctgtataaca aagcgggtgt aaatgggctg tttactgatt
     8641 tccctgataa ggcagtaaaa tttcttaata aagagtaatg ttactgcagg atggcgttca
     8701 tgcgccatcc tgtctcatat caaatttttc caatcgccac taattgttcc atgcacattt
     8761 gtagtaaaaa cagtggactg ccttctaccg gcttttcttt agccagcaac gaaatctgtc
     8821 gatagaaagt tggttcgaga ggaacggaac acaattcacc tgcaatgctt ttcagcgtta
     8881 actctggttg taaggcgatg cctaatccct gtcgaataaa attcatcgct gtatccgcct
     8941 gattaaattc acattttatc tgctgggcgc actattagtg gtagtggctg gtggaatcta
     9001 tgcgctgcaa atgaagggta aaagcggtgt caagctagta gtggcaaaag aaattcatta
     9061 atacgacacg tttcattaag at
//
LOCUS       DADMHM010000161         9077 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.164, whole genome shotgun sequence.
ACCESSION   DADMHM010000161 DADMHM010000000
VERSION     DADMHM010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9077)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9077)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9077
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.164"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(1..931)
                     /locus_tag="JN125_003213"
                     /pseudo
     CDS             complement(1..931)
                     /locus_tag="JN125_003213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001764249.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF968 domain-containing protein"
     gene            complement(983..1240)
                     /locus_tag="JN125_003214"
     CDS             complement(983..1240)
                     /locus_tag="JN125_003214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009453440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872883.1"
                     /translation="MNNRTITVSPEQLRRQAQEMLRCAEQMEKTSVAKDTLRKQLTPA
                     LRDLLQAKHRTQKAVDELVDCVAELEGQVSQFETLVKEFTA"
     gene            complement(1237..2638)
                     /locus_tag="JN125_003215"
                     /pseudo
     CDS             complement(1237..2638)
                     /locus_tag="JN125_003215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000203847.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
     gene            complement(2635..3513)
                     /locus_tag="JN125_003216"
     CDS             complement(2635..3513)
                     /locus_tag="JN125_003216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706613.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HAY8872884.1"
                     /translation="MMTIDQREKQTRLQARMDELRAEIAFAQKGEKPWPYRSCLMREG
                     RGYCEKHGKYRTHILVWSDRNGEDREKISCCPDCLIAEASYLTMELSSLKAEELTDNA
                     GIALRFRDCEFDNYLEVNPDAARNLAACRRYAENWPDMLENGTSLVMTGSCGTGKNHL
                     AVSMAKHIIRNYLASVEITDVMRLTRAVKNCWRNDSEKTADDVIEHYASLDLLIVDEV
                     GVQFGSAAEMAILQEIINARYEGILPTILISNLSPEELWAFISPRIADRITDGGRNWL
                     SFNWPSYRSRIGGVAA"
     gene            complement(3524..4504)
                     /locus_tag="JN125_003217"
     CDS             complement(3524..4504)
                     /locus_tag="JN125_003217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001551255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication protein"
                     /protein_id="HAY8872885.1"
                     /translation="MSRYAPTPEVMAIGQINISGNVTPANWWKYIRLPSGRPDATAIA
                     LLSEIVYWYRPTEVRDEHTGALLGYRKRFQGDKLQRSYQAFAEQFGFGKRETADALKR
                     LRDAGFITLDLRTVEMLDGVKCSNILFVGINPQAIAAITTPSSVSPESNSNNAISDTA
                     ITLKRNTPRRHNGTGDTPNVDTNTEITTETKNTIDASADASAPARSARQEYSPEFEQA
                     WQEYPKRAGGNSKSAAFKAWKARIREGIKPETMLDGVKRYAAWVRATGNTGTQFVKQA
                     ATFFGPDRHFEDYWQQPAAHGGGRQRQVDVLAGLGAMSDKFGKSSNKLTF"
     gene            complement(4501..4800)
                     /locus_tag="JN125_003218"
     CDS             complement(4501..4800)
                     /locus_tag="JN125_003218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000995578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HAY8872886.1"
                     /translation="MNCFQFVCGCAFDNPIQRLIMLRVLMSGSSDGEGERVIDHQVLA
                     DFCCCSKQAIFRETLALERAGYLHIRKIATLTIDAKARLQPARGYTILMPRKEVV"
     gene            complement(4797..5021)
                     /locus_tag="JN125_003219"
     CDS             complement(4797..5021)
                     /locus_tag="JN125_003219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000621226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872887.1"
                     /translation="MIRHIVNSLYHRYNRCPRVGQWFATSNGHVLRVCLVNAESQKVV
                     CELQGRSYTISYPLAVFLSGKMFKRLGGVA"
     gene            complement(5018..5212)
                     /locus_tag="JN125_003220"
     CDS             complement(5018..5212)
                     /locus_tag="JN125_003220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000626789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872888.1"
                     /translation="MISYEIIISTTEYRNDVSVRTDVSVWHRRYKSRKTAELKAAEMC
                     ETISMKGSPVKYVTTVEVRP"
     gene            complement(5209..6057)
                     /locus_tag="JN125_003221"
     CDS             complement(5209..6057)
                     /locus_tag="JN125_003221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000587265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase"
                     /protein_id="HAY8872889.1"
                     /translation="MIISRPNIDSAISGRYTVSAPYKAGAGIGVLKFAHAHNRASAVF
                     LRTFPHIQIMVGRAGASKDAPGSCATGYANPVRLTTSVIGVPCGEFSKFAHEDVTMAT
                     TPTQTHPKIDVIHGKAVTSSLAVAEYFCKQHKNVIQKIQTLECSVEFTELNFQPSDYT
                     DCTGRKLPCYQITRDGFAFLAMGFTGKRAARFKEAYINAFNQMEKNLSGADAVDMSAV
                     ARNARGVYLHLREIHQIWTSQLYPMLKAVESPLASKLYDRVGDAVFGAALVDSRLNGS
                     DKEVRP"
     gene            complement(6166..6873)
                     /locus_tag="JN125_003222"
     CDS             complement(6166..6873)
                     /locus_tag="JN125_003222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001435006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HAY8872890.1"
                     /translation="MNTAIFNGKASMTSVEIAELVGSRPDSVKRTIETLAKKGIIQFP
                     QTVEIENKQSLGPRRFSSAYVFEGERGKRDSIIVVAQLCPEFTARLVDRWRELEEQIR
                     KPMSEIEMVAAMALEAVRQQKRITQVEEKVSHVAETVEQIKKGTIREGYAGYRQLKAK
                     TGLSDDKCRNLVNAYQIPTDTHEFMTPDRLLPRRAIVAVEPFMAAFYRVMEEAEPRGT
                     RWYHPKMGLFQVIGWQR"
     gene            7209..7865
                     /locus_tag="JN125_003223"
     CDS             7209..7865
                     /locus_tag="JN125_003223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015967619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAY8872891.1"
                     /translation="MKSLGERLINARQKAGLTQDALAKKAGITRVAISKAEQGLTKSF
                     NGDTLFKVAAALRCSPQWLQNGDEKDKHWENNVKSCPQRDTAHSYPVINWVQAGLFAT
                     SGDDYNMYDQDNWRHSVKYAGERGFWLEVHGDSMTSPVGITFPEGMSILVNPDKEVFS
                     GCYVIARKKSTNEATFKKYISDMGKAFLKPLNPQYPIIEMDNDCEIVGVVVDARWDIF
                     "
     gene            7968..8471
                     /locus_tag="JN125_003224"
     CDS             7968..8471
                     /locus_tag="JN125_003224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001551258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAY8872892.1"
                     /translation="MINKATTLDCLEELKNLGSLITLIAKATPDATLSSDIESRAGLA
                     WDMTNSISRKLSSAMLLQNKNSAINNRLRTQREACGLTTAELARLLDLDEEIIIQWES
                     GEYEPTISMLIPLANILGCDPMWLLTGEVTPPEQPKSEEQQHHDASQQVCPLSREALL
                     RKNQYQW"
     gene            8759..8965
                     /locus_tag="JN125_003225"
     CDS             8759..8965
                     /locus_tag="JN125_003225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000141093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872893.1"
                     /translation="MTETTSQQDNYEGICLEPDSFAVNVYHLLHATQVLHMSSNHETK
                     TLGSEILSFACEYTKAAAEKELAQ"
BASE COUNT         2294 a         2389 c         2127 g         2267 t
ORIGIN      
        1 gagaaccatg cttttcttcg aacgccagag gatccgcatg aagctcgttg tgatgctccc
       61 gacacagcgg tagcgtgaaa atatcgtgag attttgtccc cattcagccc tgaccatgac
      121 caatcaggtg atggggatcg tcggctggct taccacaaca cgcacacggc tgtgtcttca
      181 cccagcgtgt gtatttctcg ttaacccagc ggcgacgttt tgggcgtaac ataaaagact
      241 ccggcgactc cggatccact ttcagcgcca gcaccttttt cgccttatcc tggatgatgc
      301 tggtggcagg aaccgaaggc acaaggtcac tttcccgggt gacagacggc acaacaggct
      361 tcggtaatct cagtgcctta cgggctgcac tttccggtaa ggcatccgcc aggtcattac
      421 gaatcagcca ccagcacagt tccggcattg tcacaacgtg actgtcatca aaaccgagat
      481 cccgacgcac aacagacaac acccagcggg cacagttatc cgttgccatt gattccagcc
      541 gttccgtgaa ctggtcacgg agaagattgt cacagtgcca gcacagacgg attgcgcctg
      601 gcgcgtgccg cattgtggtc atgttctcgc tgtgccagtc ggaatgaggc cactgacagc
      661 ccttttcacg aagtaaccag ctctcaaggc attccacgcc accagcacga cggatcaccg
      721 cctcatggcg gaacacggcc cgaacggcag gatcatccgc cagcggttgt gatgctgccg
      781 gaacggcacc gctggcgaaa gatgaataac gttccggctc aggctccagc aggacacgcc
      841 cctgcataaa caggggcatc agctctgaac cgggcctgaa caatacaatc cccattcgcg
      901 gggcaatttc aggagtcaac aatgctctca cggtcacctc agcgaacgat attgcatgaa
      961 cgcaggagaa aaaattcagc catcacgcag taaactcctt caccagcgtt tcaaactggc
     1021 ttacctggcc ttccagttcc gccacgcaat ccaccagctc atccaccgcc ttttgtgtac
     1081 ggtgttttgc ctgcagcaga tcacgaagcg ccggagtaag ctgcttgcgg agcgtatctt
     1141 ttgccacgct cgttttttcc atctgttcag cacaacgaag catctcctgc gcctgccgac
     1201 gaagttgttc cggtgaaaca gtgattgttc tgttgttcaa aataaacgct ccgttttact
     1261 gcccgacatg cggttattgc tgtatctgcg cggattgccc ggcgtcatgg gtgtggaaag
     1321 aacccgggca ctctcctggt ccacaggcag aaaatgtccg ttatgaaaac gccggtaaat
     1381 ggtcccgagc gtgccattac gctgtttcgt gatgttgatt tctgctatgc ctctggcctg
     1441 agtttccggg ttgtatacct catccctgta aagcatcaga atgatgtcgg catccgcctc
     1501 gatttccccg gagtttttca ggtccgagtt cattgggcgt ttattgggtc tggattccac
     1561 gccgcgggag agctggctca gagcaatcag cggaaaaccg ccggattttg ccaggctttt
     1621 aagtcccttt gagatttccc ccaccgcaag gtcgtgacgc cccgtactgc gggttttaat
     1681 caggccgagg taatcgacca ccaccagcgc cgtttccggg tgtttcatcc ggtggtgctt
     1741 cgtggttgca catatctcat caatgggtca ggtttgcctg gtccaccatc cagatattac
     1801 gccccgtcat tcgtcccacg ccctgcgaga aacgcgccca gtcttcatct tcaaaacggg
     1861 caacagactt aagacgggat accggcattc caccggcagc agacaccata cgttcaccaa
     1921 tctggatgtt cgccatctcc atggtgaaca gaagcacgcc atgcccctgc tcagtcacct
     1981 tgtcgatgat gtccagcgca agttcggttt tccccatcga aggacgggcg gcaatgaata
     2041 ccaggtctcc gggctccata ccgcccgttt ttgcgtccag ttcatcaata ccggtcatca
     2101 gcgccctgga tttctccagt ccctgattgc ggcattcaac acggtcgacc acttccagaa
     2161 ggacatcatc aatgtgaacc ggctgaatga cgccctttcc ggtcgacagt gaggccatca
     2221 tgttctgcac atccttcagg gcatcctcgg ctgcttcaca ggtatacgca tcacgtaaat
     2281 tctgtaatgc ttcagtcagt gttttttctg catcgcgcag tgcggcattg cgccgcaacg
     2341 ctgcgacata gtgctccagt gaagacttca cccaggtttt gcgtccggtg tcggtaatca
     2401 ccggggcaag ttccggcatc tcattgcaca gcagtacggg gtcaatgacg ccggatatgc
     2461 gagcctgtct gcaaatcccc gcgtaaatat cccggtactg acgcacaaaa aatacatccg
     2521 ccggaagtgt ggccagaata tccatcactt ccggatcggc cccacgcaga aaaaacgcac
     2581 cgatgacagc gccttccagg tcatcgttac gccatgccgg ggtgttctgg ctggtcatgc
     2641 ggcaacacct ccgatacgag aacggtagct gggccagtta aacgacaacc agttgcgccc
     2701 gccatcggtg atcctgtcgg caatccgggg actgatgaac gcccacaatt cttccggtga
     2761 aagattgctg atcaagatag ttggcaaaat accctcatac cgggcattga taatttcctg
     2821 caaaatggcc atttcagccg cactgccaaa ctgaacgccg acttcgtcga caatcagcaa
     2881 atccagtgac gcataatgct caatgacgtc atccgctgtt ttttcactgt cattccgcca
     2941 gcagtttttc acagcccggg taaggcgcat cacgtcggtg atctccacac tggccagata
     3001 gttacggatg atgtgttttg ccattgatac cgccagatga tttttcccgg taccgcaact
     3061 gccggtcata acaagactgg taccgttctc cagcatatct ggccagttct ccgcatagcg
     3121 gcgacaggcc gcaagatttc tggctgcgtc aggattaacc tccagataat tatcaaactc
     3181 gcagtcccga aaacgcagag caattccggc gttatcagtc agttcttccg ccttgaggga
     3241 cgacagttcc atggtcaaat aactggcctc agcgatcaag cagtcagggc agcatgaaat
     3301 tttttctctg tcctcgccat tacgatcgct ccacaccagt atatgcgtac gatatttacc
     3361 gtgtttttcg caatatccgc gaccttcacg catcaggcag gaacgataag gccatggctt
     3421 ttcgcccttc tgagcaaatg caatctctgc ccgtaactca tccattcgcg cctgtagtct
     3481 tgtttgtttc tcacgttggt caatcgtcat catcgctgtc acctcagaat gtcaatttgt
     3541 tactggattt accgaatttg tcagacatgg ctcccaggcc agccaggaca tcaacctgtc
     3601 gctgtcgccc acctccgtga gcggctggct gttgccagta atcttcgaag tgacgatcgg
     3661 gtccaaagaa cgtcgcagcc tgcttcacga actgtgtgcc ggtatttcct gtagcacgta
     3721 cccaggcggc ataccgcttc acgccatcaa gcatggtctc cggttttatt ccttccctga
     3781 tacgggcttt ccaggctttg aaggctgctg acttggaatt gccaccagca cgtttgggat
     3841 attcctgcca ggcctgttca aattccggtg aatattcctg tcgggcagaa cgcgctggcg
     3901 cagacgcgtc agcggatgca tcaatagtgt ttttagtctc cgttgtaatc tctgtatttg
     3961 tatcaacatt cggcgtatcc cctgttccgt tatgacgtcg gggggtgttc cgttttaacg
     4021 taatagctgt atcgctgatt gcattattgc tgttactttc tggcgaaaca gaagaaggtg
     4081 tggtgatggc cgcaattgcc tgtgggttga tcccgacaaa caaaatattg ctgcatttca
     4141 ccccatcgag catttccacc gtgcgtaaat ccagagtaat aaaccctgca tcgcgcagac
     4201 gcttcagcgc atctgcggtt tcccttttcc cgaaaccaaa ctgctcagca aacgcctggt
     4261 agcttctttg cagtttgtcg ccctgaaaac gcttgcgata tcccagcaac gctccggtgt
     4321 gctcatccct gacctctgtc gggcggtacc agtaaacgat ctctgaaagc agagcgatag
     4381 ccgtcgcatc cggacgccca ctgggtagtc gaatatattt ccaccagttc gcaggtgtaa
     4441 cattgccgga aatattaatt tgaccaatag ccataacttc cggtgtgggg gcgtaacggc
     4501 tcatacaacc tccttccgcg gcatgagaat tgtgtagcca cgcgcaggtt gtagtctggc
     4561 ttttgcatca atagtaagcg ttgcaatttt tcggatatga agataaccag ctctttccag
     4621 tgccagggtt tccctgaata tcgcttgctt agaacaacag cagaaatcag caagcacctg
     4681 atgatcaata actctctcgc cttcaccgtc tgaagaaccc gacatcaaaa cacgcaacat
     4741 aatcaggcgc tgaatcgggt tatcgaaagc acatccgcac acaaactgaa aacagttcac
     4801 gccacacctc ccagacgctt aaacattttt ccagacagaa ataccgccag agggtaactg
     4861 atggtgtagc tacgcccctg tagttcgcac acgactttct ggctttcagc gttgactagg
     4921 caaacccgca gaacgtgacc gttgctggtg gcgaaccact gccccacacg ggggcaacgg
     4981 ttgtatcggt gatacaggga attaacgatg tggcggatca tggacgcacc tccaccgtag
     5041 ttacgtattt aaccgggcta cctttcattg agatggtttc acacatctct gccgctttca
     5101 gttccgctgt ttttctggat ttatagcgac ggtgccagac agatacatcc gtgcgaactg
     5161 atacatcgtt tctgtattcc gtagtggaga tgatgatttc gtaactaatc atgggcgaac
     5221 ctccttgtca gaaccattca gcctggaatc aacaagtgca gcgccaaaaa cagcatcacc
     5281 aacacggtcg tacagtttgc tagccagcgg agattcaacg gccttaagca ttggataaag
     5341 ctggcttgtc cagatttgat ggatttcacg caaatgcagg tatacgcctc tggcgtttcg
     5401 tgcgacagct gacatatcaa ccgcgtcagc accagataaa ttcttctcca tctggttaaa
     5461 ggcgttgatg tatgcctctt tgaaccgggc tgcacgtttg ccagtaaagc ccatagcaag
     5521 gaacgcgaag ccatcgcggg tgatttgata gcaaggtagt ttgcggcctg tgcaatcggt
     5581 gtaatcactg ggctgaaaat tcagctcagt gaattcaaca gagcactcaa gcgtctggat
     5641 tttttgaata acgtttttgt gctgcttgca gaaatattcg gcaacggcca aagaagaggt
     5701 aacagccttc ccatggataa catcaatttt agggtgagtt tgggtagggg tggttgccat
     5761 agtgacatcc tcatgtgcga attttgaaaa ctcaccacat gggacgccaa tcacagaggt
     5821 ggtgagacgt acagggttgg cgtaaccggt cgcacatgac cccggcgcat ctttcgatgc
     5881 ccctgcacgc cccaccataa tttggatgtg aggaaacgtg cgcaaaaaaa ccgctgaagc
     5941 gcggttatgc gcatgtgcga atttcaggac gccaatcccg gcacccgctt tataaggtgc
     6001 ggagacagtg taacgtcccg aaattgcaga atcaatattt ggtcttgaaa tgatcatata
     6061 gctgctgata tctttagaac tgttcttgga tgtttcggag ccgttttatg cgaaacagct
     6121 ccccgttatt gatgttgagt gagccgggtt actcccggct ttttttcacc gctgccaacc
     6181 aataacctga aataacccca ttttcgggtg ataccagcga gtccctcgcg gttctgcttc
     6241 ctccataacc cgataaaaag cagccataaa cggttccaca gcaacaattg cgcgacgtgg
     6301 caacaatctg tccggcgtca tgaactcatg ggtgtctgta ggaatttgat aggcgttcac
     6361 cagattgcgg catttatcat ctgacaaacc ggtttttgct ttcagttggc gatatccggc
     6421 atagccctca cgaatagtgc cctttttaat ttgctcgact gtttcagcaa cgtggctgac
     6481 tttttcttcc acctgagtga tccgtttctg ttggcgaacg gcttcaagag ccatcgcggc
     6541 aaccatttcg atttcgctca ttggcttacg gatctgttct tccagttcgc gccagcgatc
     6601 taccaggcga gctgtgaatt caggacagag ctgtgcgacg acaatgatgc tgtcgcgctt
     6661 acctcgttca ccttcgaata catacgcgct agaaaatcgg cgaggcccaa gtgattgttt
     6721 attctcaatt tccacagtct gtggaaattg gatgattccc tttttagcca gtgtttcaat
     6781 agttctctta acactatctg gtcggcttcc caccagctct gcgatctcaa cgctggtcat
     6841 ggatgctttg ccgttaaaaa ttgcggtgtt cattgttggt ctcctgtggg cttgtcatct
     6901 tctgtattcg ctagccttgg gtgtgtatat ggaatgctcg gatccagatg acaaagaatg
     6961 gcaacatcct ccggaacacc tcgcgttttc cactttccaa caccttgact gccacgaggc
     7021 cttcctttct ttgggaacct gcgaccaata gcggcattgg ttttaaattg aatttttaat
     7081 atttcataaa gggtcattct ttagtctcac accagatact ttgttattca acgatgttaa
     7141 ccgcgggatt ccaaagtatc aagaaattct gttactttcg tatcaacagc catgagagga
     7201 gaagaaaaat gaagtcttta ggtgaacgtc tcatcaacgc acggcaaaaa gctgggttaa
     7261 cacaagatgc gttggctaaa aaagctggga tcaccagagt tgcaatcagt aaagccgagc
     7321 aaggccttac aaaaagtttc aacggtgaca ccctttttaa agttgcagct gcactgcggt
     7381 gttcaccgca gtggcttcag aacggagatg aaaaagataa gcattgggaa aataatgtta
     7441 agagctgccc acagagagac acagcacact cttaccctgt aattaactgg gttcaggcag
     7501 gattattcgc aacttctggt gatgactaca acatgtatga tcaggataat tggaggcatt
     7561 ctgtaaaata cgctggtgag agggggttct ggctggaagt gcacggagac tcaatgactt
     7621 cgcccgtagg aataacattt cctgaaggaa tgtcgatcct tgtcaaccca gataaagaag
     7681 ttttttcagg gtgttacgtc atcgccagaa aaaaatccac caatgaagca acattcaaaa
     7741 aatatatttc tgacatggga aaggcgtttc taaagcccct taatccacaa tatccaatca
     7801 tagaaatgga caatgattgc gaaatagtag gtgttgtggt tgatgccagg tgggatattt
     7861 tctgaccaga cacaaaacac aaaaagaaac caaagtatca aaatcacttg ccacaccttg
     7921 acaccttagt taccataaaa caaagttcgt aactgaggta tcatctcatg atcaataaag
     7981 ctacaactct tgactgtctc gaagaactga aaaacctcgg cagcctcatt acactaatag
     8041 caaaagcaac acctgatgct acactctcta gcgatataga gtcacgcgca ggactggcat
     8101 gggatatgac aaatagcata tccagaaagc tatcgtcagc aatgctttta cagaacaaaa
     8161 attctgcaat caacaaccgt cttcgcaccc aacgcgaagc ctgcggctta acaaccgccg
     8221 aactcgccag gctgctcgat ctcgatgaag aaattatcat ccagtgggag agcggagagt
     8281 atgaaccaac tatcagtatg cttatcccac tggcaaatat tcttggctgc gatccgatgt
     8341 ggctgttaac tggtgaggtt actcctccgg agcaaccaaa aagtgaggag cagcaacacc
     8401 atgacgcatc tcaacaagtt tgccccttat ctcgcgaagc tcttctgcgg aagaaccaat
     8461 accaatggtg acataatcgc cgcttcgccc ttcaaggtac atgcgaacat ttttatcaat
     8521 cattgcggaa acagtctcaa tatgaaaaca cttctgagac tcgctatata gcagaacata
     8581 taagtcagct gaggaagcca tgaaaaagtt cgaaaacata actgttctcc atgttgatga
     8641 ctttgattat acaaacccgg aacttctccc ggaggttgta aaggcaatag atgttgccga
     8701 tatagtgatt agagaaaaga gaattgtcaa aaacaggctc gcatgcactt caggagcaat
     8761 gacagaaaca acctcacagc aagataatta cgaaggcatt tgtctggagc ctgattcatt
     8821 tgcggtaaat gtttatcatt tattgcatgc aacacaggta ttacatatgt ccagtaatca
     8881 cgaaacgaaa acactcggca gcgaaattct gagttttgca tgtgagtata caaaagctgc
     8941 tgccgaaaaa gaattagcgc aataacaaca aatatgccct gaacgtttat tgcggtttta
     9001 tcgccgggga ttgttacaac cttaatccgc aggaggcttt attgtgactt ttataaagaa
     9061 tatggcatca cacaaga
//
LOCUS       DADMHM010000162         8891 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.165, whole genome shotgun sequence.
ACCESSION   DADMHM010000162 DADMHM010000000
VERSION     DADMHM010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8891)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8891)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8891
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.165"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(482..1546)
                     /gene="phoH"
                     /locus_tag="JN125_003226"
     CDS             complement(482..1546)
                     /gene="phoH"
                     /locus_tag="JN125_003226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate starvation-inducible protein PhoH"
                     /protein_id="HAY8872894.1"
                     /translation="MVTSCTGHVLDNQRATTRGVFSSGSHLVTLHFQPHPFFSCVTDA
                     VNGARSRFSAFYPKANYGLQGSQPSDVRAHNRAANGACDEYKQLKVLSMGRQKAVIKA
                     RREAKRVLRRDSRSHKQREEESVTSLVQMSGVEAIGMARDSRDTSPILARNEAQLHYL
                     KAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD
                     IAEKFAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDE
                     AQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLPRGVCSGLSDALERFEEDEMVGIVR
                     FGKEDCVRSALCQRTLHAYS"
     gene            complement(1896..3404)
                     /gene="putP"
                     /locus_tag="JN125_003227"
     CDS             complement(1896..3404)
                     /gene="putP"
                     /locus_tag="JN125_003227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HAY8872895.1"
                     /translation="MAISTPMLVTFCVYIFGMILIGFIAWRSTKNFDDYILGGRSLGP
                     FVTALSAGASDMSGWLLMGLPGAVFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTE
                     YNNNALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSY
                     ETALWAGAAATILYTFIGGFLAVSWTDTVQASLMIFALILTPVIVIICVGGFGDSLEV
                     IKQKSIENVDMLKGLNFVAIISLMGWGLGYFGQPHILARFMAADSHHSIVHARRISMT
                     WMILCLAGAVAVGFFGIAYFNEHPAVAGAVNQNAERVFIELAQILFNPWIAGILLSAI
                     LAAVMSTLSCQLLVCSSAITEDLYKVFLRKHASQKELVWVGRVMVLVVALVAIALAAN
                     PENRVLGLVSYAWAGFGAAFGPVVLFSVMWSRMTRNGALAGMIIGALAVIVWKQFGWL
                     GLYEIIPGFIFGSIGIVVFSLLGKAPSAAMQKRFAEADAHYHSAPPSRLQES"
     gene            complement(3563..3772)
                     /locus_tag="JN125_003228"
     CDS             complement(3563..3772)
                     /locus_tag="JN125_003228"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872896.1"
                     /translation="MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQ
                     LTFLKGATAKNVRECNLMKNSVAEH"
     gene            3827..7789
                     /gene="putA"
                     /locus_tag="JN125_003229"
     CDS             3827..7789
                     /gene="putA"
                     /locus_tag="JN125_003229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001462364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trifunctional transcriptional regulator/proline
                     dehydrogenase/L-glutamate gamma-semialdehyde
                     dehydrogenase"
                     /protein_id="HAY8872897.1"
                     /translation="MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQL
                     ENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRP
                     ETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQ
                     EGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGK
                     LVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALVNARKLE
                     EKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALH
                     PRYSRAQYDRVMEELYPRLKSLTLLARQYDIGINIDAEEADRLEISLDLLENLCFEPE
                     LAGWNGIGFVIQAYQKRCPLVIDYLVDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGL
                     EGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQY
                     EFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSF
                     VNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDL
                     ANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEPKDIVGFVREATPR
                     EVEQALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAI
                     AEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNS
                     VLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGQGETVGAQLTGDDRVRGVMFTGS
                     TEVATLLQCNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAG
                     QRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHI
                     QTMRSKGRPVFQAVRENSEDAREWQSGTFVAPTLIELDDFAELHKEVFGPVLHVVRYN
                     RNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPF
                     GGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNAL
                     REWAANRPELQALCTQYGELAQAGIQRLLPGPTGERNTWTLLPRERVLCIADDEQDAL
                     TQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDS
                     DQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
                     "
     gene            complement(7829..8467)
                     /gene="rutR"
                     /locus_tag="JN125_003230"
     CDS             complement(7829..8467)
                     /gene="rutR"
                     /locus_tag="JN125_003230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator RutR"
                     /protein_id="HAY8872898.1"
                     /translation="MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQI
                     AELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKL
                     EVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQ
                     HLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR"
     gene            8755..>8891
                     /locus_tag="JN125_003231"
     CDS             8755..>8891
                     /locus_tag="JN125_003231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005226214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine utilization protein A"
                     /protein_id="HAY8872899.1"
                     /translation="MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDF
                     AL"
BASE COUNT         2170 a         2434 c         2281 g         2006 t
ORIGIN      
        1 atcatgtttt gattattaca accatcccta tttagccatt gcggcttgcc ttccacaaaa
       61 aaataacaac acacaatatt agcaaagaat taattaagat taaccttaca tttataatat
      121 tatccctaaa gaataaaatc agaggaatat attcggtgtt aaacagtcag tcaaagtata
      181 gcccattgtt gattaaacct cataagcaaa attggcacca gatctcctgt acaggttgaa
      241 tggccgaaaa aagataggca gatgctcatt tttttggctt ctggaagaaa aactctccgc
      301 gctggcagta ttacactggt ctgatgctat gacgaaaaat gcctggtaag agtatctaaa
      361 ccagactcca gttcagctta tcaacacgct caaagtcgcc cccctgaacg ctaacctgaa
      421 gtgaaaatct gttgaaataa aacaaagccc ggttcgcccg ggctctgcac cgataacaca
      481 cttaactgta tgcatgcagc gtacgttggc aaagtgccga acgtacgcaa tcctcttttc
      541 cgaaccggac gatcccaacc atttcatctt cttcgaaacg ttccagcgcg tcacttaatc
      601 cggagcacac gccgcgaggc aaatcgcatt gcgtgatatc accgttgacg ataaccgtca
      661 cgttctcccc gaggcgggtt aaaaacattt tcatttgcgc ggcagtcaca ttctgcgcct
      721 cgtcaagaat gacgactgca ttttcaaagg tacgtccacg catataggcg aacggcgcga
      781 tttccacctt ccctatttcc ggtcgcaggc agtactgcat aaaggaagcc cctaagcgcc
      841 ggaccagcac gtcgtagacc gggcgaaaat agggagcaaa cttttctgcg atatcaccag
      901 gtaagaagcc aagatcttca tcggcttgca gaactggacg ggtgacgata atcctgtcga
      961 catccttatg tatcagggcc tctgccgctt ttgctgcgct gatccaggtt tttccgcacc
     1021 cggcttcgcc cgtggcgaat atcagctgct tactctcaat agccttcaga tagtgcaatt
     1081 gcgcttcatt tcgcgcgagg atgggcgagg tatcgcgact gtcgcgggcc ataccaatgg
     1141 cttctacgcc gctcatctgc acaagcgagg tgaccgattc ttcttcacgc tgcttatggc
     1201 tgcgcgaatc ccgtctcagc acacgttttg cctcgcgacg agctttgatc actgcttttt
     1261 gtcttcccat ggagagcacc ttgagttgtt tgtattcatc acacgcgccg ttggcagcgc
     1321 gattatgcgc acgaacatca gagggttggc ttccttgtaa gccatagttt gcttttggat
     1381 aaaatgccga aaaacggcta cgcgcaccgt ttacggcgtc ggtaacacat gaaaagaaag
     1441 gatgaggttg aaaatgcaaa gtgacgagat gactaccgga ggagaaaact ccgcgagtgg
     1501 tggcgcgttg attatctaaa acatgtccag tacaggacgt taccatccgc gattatcaaa
     1561 tctaactttt tgcccggaac ataataacag ctcgggtgtt ggtggcgtca aaatcgctga
     1621 agcgttcccc gaaggccggg acagcccaca tggatgtggg ctgagggcgc gtcttacagg
     1681 acgttacctc gcgcccgacc cggtagccga aggggataag ctgaaggtac cgcgcagcgg
     1741 cgattttgtt cgccagagcc cgggggtgca cagggggcgg cggcgattgg ccgccccctg
     1801 cgcgctccct gcaccattca atttatatgg cgaggcacat taagggagcg caacccgctg
     1861 ctgaagccaa acaaaaccgc cgcaggctaa gtcccttagc tttcctgcaa ccgtgacggc
     1921 ggagccgaat gatagtgcgc atcggcctcg gcaaagcgtt tttgcatcgc cgctgacggc
     1981 gctttaccca gcaaactaaa cactacaatc ccgatactgc cgaagatgaa gcccggaata
     2041 atttcgtaca gtcccagcca gccgaactgc ttccagacga taaccgccag cgcaccgatg
     2101 atcatccccg ccagtgcacc gttacgcgtc atgcgtgacc acatcaccga gaacagcacc
     2161 accggaccaa acgccgcgcc aaagcctgcc cacgcgtagc tcactaagcc cagcacgcgg
     2221 ttttccgggt ttgccgccag cgcaatcgcc accagcgcca ccaccagcac catcacacgc
     2281 cctacccaca ccagctcttt ctggctggca tgtttacgca gaaacacttt gtataaatct
     2341 tcggtaatcg cactggagca caccagcagt tggcaactta aggttgacat taccgccgcc
     2401 agaattgccg acagcagaat cccggcaatc cacgggttaa acagaatttg cgccagttcg
     2461 ataaacacgc gctcggcgtt ctggtttacc gcgcctgcta ccgccgggtg ctcattaaag
     2521 taagcaatcc caaagaagcc gacagccacc gcccctgcca ggcagaggat catccaggtc
     2581 atactgatac gacgcgcatg gacaatgctg tggtgagaat ccgccgccat aaaacgcgcc
     2641 agaatgtgcg gctgcccgaa gtaacccagc ccccaaccca tcagtgagat aatggcaaca
     2701 aagttcagac ctttgagcat atcaacgttt tcgatgctct tttgtttgat cacttccagc
     2761 gagtcaccaa agccaccgac acagataatg acgataaccg gtgtcaggat cagggcaaaa
     2821 atcatcaggc tggcctgtac agtgtcagtc cagctcaccg cgaggaaacc gccaataaag
     2881 gtgtaaagga tcgtcgccgc agctcccgcc cacagagccg tttcgtagct catgccaaag
     2941 gtactttcaa acagacgcgc gcctgccaca atgcccgaag cgcaataaat ggtgaagaac
     3001 agcaaaataa ccagcgcgga gataatgcgc aaaatgcggc ttttatcttc aaaacgcccg
     3061 gtgaaataat ccggcaatgt taaggcgtta ttattgtatt cggtatgcac acgcaaccgc
     3121 ccggccacca gcttccagtt gatccacgcg cctaatgtca ggccaatggc gatccagctt
     3181 tcggaaatcc cggaaagaaa aaccgcgcca ggcaacccca ttaacagcca gccgctcata
     3241 tccgacgcac ccgccgataa tgccgtcaca aatggcccaa gactacgacc gcccagaata
     3301 tagtcgtcaa agtttttcgt tgatcgccag gcgataaacc caatcaatat catgccaaag
     3361 atatagacac aaaatgtcac caacatcggt gtgctaatag ccatctaaag tctccaaaaa
     3421 attattatcg gcaatgtcga aacttgccgt tatatctgca accggaacgg ggtaacagag
     3481 tttatttttt accagggcga ccgtatcctg ccggaagcgc tggttattca caatcgattt
     3541 aacacaccat ttacattaaa ttttagtgct cagcgacact atttttcatc aggttgcact
     3601 ctctcacatt ttttgcggtt gcacctttca aaaatgttaa ctgccgcaga gaaaaagtct
     3661 gagttatttt tttaatccct gtcatatcaa tttcttttat taacatttca ttcattttta
     3721 agcttgctac gcaggtcaca tttaacatgg ttgcacaaag ttgcaacatc atggatattt
     3781 cacgataacg ttaagttgca cctttcagaa caacaggagt aatggcatgg gaaccaccac
     3841 catgggggtt aagctggacg acgcgacgcg tgagcgtatt aagtctgccg cgacacgtat
     3901 cgatcgcacg ccacactggt taattaagca ggcgattttt tcttatctcg aacaactgga
     3961 aaacagcgat actctgccag agctacctgc gctgctttct ggtgctgcca atgagagcga
     4021 tgaagcaccg actccggcag aggaaccaca ccagccattc ctcgactttg ccgagcaaat
     4081 tttgccccag tcggtttccc gcgccgcgat caccgcggcc tatcgtcgcc cggaaaccga
     4141 agcggtttct atgctgctgg aacaagcccg cctgccgcag ccagttgctg aacaggcgca
     4201 taaactggca tatcaactgg ccgataaact gcgtaatcaa aaaaatgcca gtggtcgcgc
     4261 aggtatggtc caggggttat tgcaggagtt ttcgctgtca tcgcaggaag gcgtggcgct
     4321 gatgtgtctg gcggaagcgt tgttgcgtat tcccgacaaa gccacccgcg acgcgttaat
     4381 tcgcgacaaa atcagcaacg gtaactggca gtcacacatt ggtcgtagcc cgtcactgtt
     4441 tgttaatgcc gctacctggg ggctgttgtt tactggcaaa ctggtttcca cccataacga
     4501 agccagcctc tcccgctcgc tgaaccgcat tatcggtaaa agcggtgaac cgctgatccg
     4561 caaaggtgtg gatatggcga tgcgcctgat gggcgagcag ttcgtcacgg gtgaaaccat
     4621 cgcggaagcg ttagtcaatg cccgcaagct ggaagagaaa ggtttccgtt actcttacga
     4681 tatgctgggc gaagctgcac tgactgccgc agacgcacag gcgtatatgg tttcctatca
     4741 gcaggcgatt cacgccattg gtaaagcgtc taacggtcgt ggcatctatg aaggtccggg
     4801 catttcaatc aagctgtcgg cgctgcatcc gcgctacagc cgcgcccagt atgaccgggt
     4861 aatggaagag ctttacccgc gtctgaaatc actcaccctg ctggcgcgtc agtatgatat
     4921 tggtattaac atcgatgccg aagaggccga tcgtctggag atctccctcg atctgctgga
     4981 aaatctctgt ttcgagccgg aactggcagg ctggaacggc atcggttttg ttattcaggc
     5041 ttatcaaaaa cgctgcccgt tggtgatcga ttacctggtt gatctcgcca cccgtagccg
     5101 tcgccgtctg atgattcgcc tggtgaaagg cgcgtactgg gatagtgaaa tcaagcgtgc
     5161 gcagatggac ggccttgaag gctatccggt ttatacccgc aaggtgtata ccgacgtttc
     5221 ttatctcgcc tgtgcgaaaa agctgctggc ggtgccgaat ctaatctacc cgcagttcgc
     5281 gacgcacaac gcccatacgc tggcagcgat ttatcaactg gcaggtcaga actactatcc
     5341 gggtcagtac gagttccagt gcctgcatgg tatgggcgag ccactgtacg agcaggtcac
     5401 agggaaagtt gccgacggta aacttaaccg accgtgtcgt atttatgccc cggttggcac
     5461 acatgaaacg ctgctggcgt atctggtgcg tcgcctgctg gaaaacggtg ctaacacctc
     5521 gtttgttaac cgtattgccg acacctcttt gccactggat gaactggtcg ccgatccggt
     5581 cactgctgta gaaaaactgg cgcaacagga agggcaaact ggattaccgc atccgaaaat
     5641 tcccctgccg cgcgatcttt acggtcacgg gcgcgacaac tcggcagggc tggatctcgc
     5701 taacgaacac cgtctggcct cgctctcctc tgccctgctc aatagtgcac tgcaaaaatg
     5761 gcaggccttg ccaatgctgg aacaaccggt agcggcaggt gagatgtcgc ccgttattaa
     5821 ccctgcggaa ccgaaagata ttgtgggctt tgtgcgtgaa gccacgccgc gtgaagtaga
     5881 acaggcgctg gaaagtgcgg ttaataacgc gccaatctgg tttgccacgc ctccggctga
     5941 acgcgcggcg attttgcatc gcgctgccgt gctaatggaa agccagatgc agcaactgat
     6001 tggtattctg gtgcgtgaag ccggaaaaac cttcagtaac gctattgccg aagtgcgcga
     6061 agcggtcgat tttctccact actacgccgg acaggtgcgg gatgatttcg ctaacgaaac
     6121 ccaccgtcca ttagggcctg tggtgtgtat cagtccgtgg aacttcccgc tggctatttt
     6181 caccgggcag atcgctgccg cactggcggc aggtaacagc gtgctggcaa aaccggcaga
     6241 acaaacgccg ctgattgccg cgcaagggat cgccattttg ctggaagcgg gtgtaccccc
     6301 tggcgtggtg caattgctgc caggtcaggg ggaaaccgtg ggcgcgcaac tgacgggtga
     6361 tgatcgcgtg cgcggggtga tgtttaccgg ttcaaccgaa gtcgctacgt tactgcagtg
     6421 caatatcgcc agccgcctgg acgctcaggg tcgccctatt ccgctcatcg ctgaaaccgg
     6481 cggcatgaac gcgatgattg tcgattcttc agcactgacc gaacaagtcg tcgtggatgt
     6541 gctggcctcg gcgttcgaca gtgcgggtca gcgttgttcg gcactgcgcg tgctgtgcct
     6601 gcaagatgag attgccgacc acacgttgaa aatgctgcgc ggtgcaatgg ccgaatgccg
     6661 gatgggtaat ccgggtcgcc tgaccaccga tatcggtccg gtgattgata gcgaagcgaa
     6721 agccaatatt gagcgccata ttcagaccat gcgtagcaaa ggccgtccgg tgttccaggc
     6781 ggtgcgggaa aacagcgaag atgcccgtga atggcaaagc ggcacctttg tcgccccgac
     6841 gctgatcgaa ctggatgact ttgccgaatt gcacaaagag gtctttggtc cggtgctgca
     6901 tgtggtgcgt tacaaccgta accagctacc agagctgatc gagcagatta acgcttccgg
     6961 ctatggtctg acgcttggtg tccatacgcg tattgatgaa accatcgccc aggtcactgg
     7021 ctcggcccat gttggtaacc tgtatgttaa ccgtaatatg gtgggcgcag tggttggtgt
     7081 gcagccgttc ggcggcgaag ggttgtccgg taccgggccg aaagcaggcg gtccgctcta
     7141 tctctaccgt ctgctggcga atcgcccgga aagtgcgctg gcagtgacgc tcgcgcgtca
     7201 ggatgcagag tatccggtcg atgcacagtt gaaagccgca ttgactcagc cgctaaatgc
     7261 actgcgggaa tgggcagcaa atcgtccaga attgcaggcg ttatgtacgc aatatggcga
     7321 gctggcgcag gcaggaatac aacgattgct gccggggccg acgggtgaac gcaacacctg
     7381 gacgctgctg ccgcgtgagc gcgtgttgtg tattgccgat gatgagcagg atgcgctgac
     7441 tcagctcgcc gccgtgctgg cggtgggcag ccaggtactg tggccggatg acgcgctgca
     7501 tcgtcagcta gtaaaggcat tgccatcggc agtcagcgaa cgtattcaac tggcgaaagc
     7561 ggaaaatata accgctcaac cctttgatgc ggtgatcttc cacggtgatt cggatcagct
     7621 tcgcgcattg tgtgaagccg ttgctgcgcg ggatggcgca attgtttcgg tgcagggttt
     7681 tgcccgtggc gaaagcaata tccttctgga acggctgtat atcgaacgtt cgctgagtgt
     7741 gaataccgct gccgctggcg gtaacgccag tttaatgacg atcggttaaa caggtagccg
     7801 gaggatgtta caccctcctc cggcatcttt aacgtggtcg aatcccctca ataataatcc
     7861 gctgcacgtt ttcaaccgtt tgattgaaaa atacctcatc gcgcaacgtt gcgcctgtca
     7921 ccgcctccac ctgaggggcg aaatcggcgt aatgttgagt ggaagcccaa atcataaaaa
     7981 tcaaatgctg cggatcaatc ggcgcgagtt tgccgctttt gacccaaccg gcaatcagcg
     8041 ccgatttctc atcaattaat gccttcaaat cgcccgtcag ttcatccatt aacagcggcg
     8101 cgcctgccag catctccata cagaacaggc gcgaagcctg cggataatcg cgtgagactt
     8161 ccagcttcag acggatgtac tctttgatcg ccgccagcgg ggcgaaatct tcacgaaacg
     8221 cttttaacgg tgccagccag atatcgagaa tctgccgcag cacggcaata tacagcgcct
     8281 cttttgacgg aaagtaatac agcagattgg tttttgaaac acccgccaac tctgcgatct
     8341 gctccagcct tgtgccgtga aaaccgaatt gtgaaaaagt gtccagtgct gcgctaagaa
     8401 tcgctttttt cttcgcgctt actgcgcgcg aacgtttacc cgttgttttc actgcgcctt
     8461 gcgtcatgcg ctctcccctc ttgtagattg gcaacaggat agcaaaaccc ccgcccggcc
     8521 tcgaccttct gcactctcat cgcgcacgga tgcatgtttt atgtgcaact gttttgaccg
     8581 tttagtccac tttttaccag atattttaga taacacaatg ctaacacatt aataatattc
     8641 actttttaaa aactggcatc cgctttgcaa acaatccaat acgcggctga aaaggatatg
     8701 caggatgcag cgccccgtct gactttcact ttacgagacg aagagaggtt gatgatgaaa
     8761 attggcgtat tcgtacctat tggcaacaac ggctggctca tttcgaccca cgcgccgcag
     8821 tacatgccga cctttgaact gaataaagcc attgtgcaaa aagcggagca ttaccatttc
     8881 gatttcgccc t
//
LOCUS       DADMHM010000163         8879 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.166, whole genome shotgun sequence.
ACCESSION   DADMHM010000163 DADMHM010000000
VERSION     DADMHM010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8879)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8879)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8879
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.166"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..559
                     /locus_tag="JN125_003232"
     CDS             <1..559
                     /locus_tag="JN125_003232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000735989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872900.1"
                     /translation="GLWHVNASYILDIAGLDSIDTPARIFSPAHRKRELDVSANYYFF
                     LDYTKHAFHEISVEDLYITRPWVEYIGECMDKNQPIYSPETRINLQALYEDVKNVEHG
                     NRERHRQKREICLLALIYVKRHYPEECKGKNGKETNEAWANATINHWALLGGGYDEPS
                     IDYLKKLIADADRTPEERTTAGKKR"
     gene            672..875
                     /locus_tag="JN125_003233"
     CDS             672..875
                     /locus_tag="JN125_003233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001018038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family phage regulatory protein"
                     /protein_id="HAY8872901.1"
                     /translation="MNIDTIPTKGYIRRFRLAELLGVSVSTIDRKVRNGSLPRPVKLG
                     EKITAFDAVEIHNWLAERRGKVA"
     gene            875..1306
                     /locus_tag="JN125_003234"
     CDS             875..1306
                     /locus_tag="JN125_003234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016535037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872902.1"
                     /translation="MEKKNRPLQAANSDIRVSDVTPLTKSLQAPKRTPKKHRARVYML
                     RTGIEGWTENDILRYCRLSSGRNYASELERRLDIQLERIDEKNPDGIGPHLRYRFTGR
                     GDVLKVIRLVNHNADAGGYQGLSQPEIADILNLYPDNLTAA"
     gene            1320..2129
                     /locus_tag="JN125_003235"
                     /pseudo
     CDS             1320..2129
                     /locus_tag="JN125_003235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000151282.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="antA/AntB antirepressor family protein"
     gene            2122..2304
                     /locus_tag="JN125_003236"
     CDS             2122..2304
                     /locus_tag="JN125_003236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001244025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4222 domain-containing protein"
                     /protein_id="HAY8872903.1"
                     /translation="MRNHNPMPGSRYKDSHGAVVTVERVEHNRVTFYREGYQSPCVQP
                     LERFVNEFVEVRRDTE"
     gene            2291..2998
                     /locus_tag="JN125_003237"
     CDS             2291..2998
                     /locus_tag="JN125_003237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000602541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ash family protein"
                     /protein_id="HAY8872904.1"
                     /translation="MILNEPAAQKEAFNLAGLLTNVNPYNLIKPDIDTAAPGVPLPVR
                     EALTLNKKMVSRAQEKLLKGYGFIWYDHLAEKSCYSSSVAAKSATGRGNPNTLRATQT
                     PKASFFVSDHYAHQISGLVRTVSMVALVGLRSRRPVSFVSGISTPANVTAISERGNSG
                     GDSLNTKEAAAMLATTPTQKPQFIWIIAAVRRDCPTITAKIHHIAAESERDARRSLVR
                     DHVCFFAGRIRMEVAHD"
     gene            2991..3209
                     /locus_tag="JN125_003238"
     CDS             2991..3209
                     /locus_tag="JN125_003238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000598361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872905.1"
                     /translation="MIKTYDVHMDPLERTSQIITLTEVINDILVSNSPSRDEKLKALL
                     AILDLAVRDVHFLLEGGEMSGKRGATNE"
     gene            3202..3396
                     /locus_tag="JN125_003239"
     CDS             3202..3396
                     /locus_tag="JN125_003239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001065662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872906.1"
                     /translation="MNNSINTPRLTSALQLIEQTAAVLVAVSLSAEEMDAADVVDAIK
                     ACSSLVNDARAELVILGGEK"
     gene            3393..3656
                     /locus_tag="JN125_003240"
     CDS             3393..3656
                     /locus_tag="JN125_003240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001468267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinic acetylcholine receptor subunit beta"
                     /protein_id="HAY8872907.1"
                     /translation="MNINLIYRHPCELEIESLLGREEPYPDTFTPADCATERLTRART
                     GLVHVMNEIVPSVGGEQATVINSWLQKVTSLIDISLIDVESAK"
     gene            3653..3874
                     /locus_tag="JN125_003241"
     CDS             3653..3874
                     /locus_tag="JN125_003241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000181940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872908.1"
                     /translation="MTNIQLIEAQCRIEQVQTVLGFWLEGASPSNRDKLMIGAVMSLL
                     NGVPEAIQEADELLGKYELQNHSGEAKHE"
     gene            3867..4469
                     /locus_tag="JN125_003242"
     CDS             3867..4469
                     /locus_tag="JN125_003242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016245739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872909.1"
                     /translation="MNNFLTFHAEATPGGVNIMYRSNDGMTERVETVSYIDAVNRLDA
                     GDYDDKPDEGMFIHLAIASGGNQGYFDYTSQHHVIMWRWLIATVFMLEMREENGTVSI
                     IDDTGNPSEVAVYSNGIVAMPLYPVAERLAMANNIEGAMIERFGIESGTERAIIFYRA
                     MMDVEQGALTPFGRETLAELHNSFIAELNENGWPEMALAH"
     gene            4478..4819
                     /locus_tag="JN125_003243"
     CDS             4478..4819
                     /locus_tag="JN125_003243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000628964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872910.1"
                     /translation="MITKNFRLNALANKYAAALYNHITSTSGGDYFMIDADGLAVRVE
                     IVNGVKGVRSLIDSYALAAMKVRYPQWEIVGIELLDRCVTKDGLTDIGREIWQSMIND
                     MGATVAGGNHA"
     gene            4812..7571
                     /locus_tag="JN125_003244"
     CDS             4812..7571
                     /locus_tag="JN125_003244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016244017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF927 domain-containing protein"
                     /protein_id="HAY8872911.1"
                     /translation="MRNIDLIREVTSAAAGRWPYVLAELSIDVPDSSRRHSPCPACGG
                     KDRFRFDDNGRGSFICNQCGAGDGLDLIKRVNNCDTTEAAQLAADVLGIDYRAAQTDP
                     AAASHRREQLEADRQQREQERQKQAAEDAEQRRATFAHLYAGMRQSATQGESDYLQSK
                     GLTGFNYPVMPDGSLLLELVDESAAVAAAQTITPQGEKRLLTGSAKRGAYHAVNAPES
                     PQSVLIAEGLATALSVHLMRPDALAVAAIDAGNLLPVAEVMRRIYPATQIIIAADNDH
                     QQDDQANTGKDAAEKAALSVAGWVALPPTDYKADWDDYRQQNGLEVATAAFNDSMYQI
                     QGEAVKPRLQAIEGGKTDHPEKDPLKPHIESRKDSVFWVTPKVDKESGEIVNAESWLC
                     SPLEVIGTGRDDKDQYLIISWLAFGAGIPTTAAIPLADIGEREGWRTLKAGGVNVTTK
                     SSLRAILADWLQRSGSRELWRVAHATGWQCGAYIMPDGEIIGTPERPVLFSGRSSAAA
                     GYTVAGTPESWRNSVARLAYGNYAMMTGIAAALAAPLIGVAERDGFGIHFYEQSSAGK
                     TTTQNVASSLYGNPDALRLTWYGTALGMINEAAAHNDGLMPLDEVGQGADPISVSQSA
                     YALFNGVGKLQGAKEGGNRDLKRWRTVAISTGEMDLETFIASAGRKTKAGQLVRLLNI
                     PLSKAVRFHEHQTGKDHADALKSAWQSNHGAAGREWIRWLAGHQQQAIDTVRDCEARW
                     RSLIPADYGEQVHRVGARFAILEAALLLGGVVTGWDDQTCRDAIQHSYNAWLREFGTG
                     NKEHQQIIEQTEAFLNAYGLSRFAPLGYDPRDLPIRDLAGYRKKGNHDGDPIIFYTFP
                     AAFEQEIAKGFNTKQFAEVLKNAGMLTPPTSGRGYQGRVREDGRQIRVYVLNFMAEES
                     SQPEE"
     gene            7937..8371
                     /locus_tag="JN125_003245"
     CDS             7937..8371
                     /locus_tag="JN125_003245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000126714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HAY8872912.1"
                     /translation="MTAQISAYGRLVADPQTRTTTNGNNMAMARLAVSLPCNAAEAGE
                     STFWLGVIAFGKQADALAKHQKGDLVSVAGNMQLNQWTGQDGGTQQGYQVVADSVISA
                     RTVRPGGKAGQRGQATDALRRAQQPSRDEYDQSPPFDDETPF"
     gene            8382..>8879
                     /locus_tag="JN125_003246"
     CDS             8382..>8879
                     /locus_tag="JN125_003246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002436679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872913.1"
                     /translation="MSTQPIIIEFGSYRWPRHLAIHEAGHAIAAWFFGIQEVEIALSG
                     NNRVAKTYLSGDVDECGAVAVWHANYPRNVAEVKSYTLSNDDTRLRLIDQVCRAMVIS
                     LAGIVAQSRYTGDDINALMETSGKADMKNVRDLSEVYRVAGGEDADIQRISLSRAEAL
                     IALKWW"
BASE COUNT         2350 a         2175 c         2484 g         1870 t
ORIGIN      
        1 tgggctatgg catgttaacg cctcctatat actcgacatc gcagggcttg attctattga
       61 cactcccgca cgcatattca gccccgcaca cagaaaaaga gaactagacg taagtgcgaa
      121 ttattatttt tttctcgatt atacaaaaca tgccttccac gaaatatccg tagaggattt
      181 gtacataaca aggccgtggg ttgaatatat cggcgaatgc atggacaaaa accagcccat
      241 atacagcccc gaaactcgca taaacttaca agctctttat gaggatgtta aaaacgttga
      301 gcacggaaac agagagcgcc acaggcaaaa gcgcgaaatt tgcctcttgg cgttgattta
      361 tgtgaagcgg cactacccag aagagtgtaa agggaagaac gggaaggaaa ccaacgaagc
      421 atgggcgaac gccacaataa accactgggc gcttttgggg ggcggctatg atgagccatc
      481 catagattac ctgaagaaac tcatagccga cgcagacaga acaccggaag aacgcaccac
      541 ggcagggaaa aaaaggtgat agtaaatttt actatcacga tagtaaaaaa tacgatcatt
      601 cctttttgag cgtgcacgcc attaaatccc cgtaacgaag caacaactat cgctaagagg
      661 ttacgggaat catgaacatc gacactatcc ctacaaaagg ctatatcaga cgcttccgcc
      721 tggctgaatt gctgggcgtt agtgtatcca ccatcgaccg taaagtaaga aacggttcac
      781 taccacgtcc ggtaaagctg ggagaaaaaa taactgcgtt tgatgcggtt gagattcaca
      841 actggctggc agaacgccgc gggaaggtgg cctgatggaa aagaaaaacc gcccattaca
      901 ggcggctaat tcagatattc gcgtatctga tgttacgccc cttacaaaat cccttcaagc
      961 accaaagcgc acaccgaaaa agcatcgtgc cagagtctat atgctgcgta ctggtataga
     1021 gggatggaca gaaaatgaca ttctgcgtta ttgccgcctt tcgtctggaa ggaactacgc
     1081 cagcgagtta gagcgcaggc ttgatattca gcttgagcgt atagacgaaa agaaccccga
     1141 cgggataggg ccacatttac gctatcgctt taccgggcgc ggtgacgttc taaaagttat
     1201 tcggcttgtg aaccataacg ccgacgctgg cggctatcag ggactttctc agcctgaaat
     1261 tgccgacatt ctcaatctat acccggacaa tctcaccgcc gcataacgga gccgaaaata
     1321 tgactatcga aaaaagccga ttcagttcgg gggccgcccc gcaacccaac gttaacacgg
     1381 gagtaattaa cggcaacgac tttgccgcta ttgttcccgt tattgccgga cgcattggcg
     1441 ggcgtgaagc caatattgtg agcgctaagg cgttgcataa agcgctgggg gtgggccgcg
     1501 actttactaa ctggattaaa ggccgaattg accagtacgg ttttattgcc ggaaccgatt
     1561 ttatccgtgt tgaaaatttg agcacgccaa aacgggcgag cgcaaaaact cgccagcaaa
     1621 tagagcatga ttacctgcta tcgctggata tggctaaaga agtggcaatg gttgaacgca
     1681 acgagcaggg ccgcgctatc cgccgttatt tcatccagtg cgaggaagaa ttacagcgta
     1741 gcgtgcctga aatcgccgcc cgctatcgtc gccagctaaa agcccgtctc agtgccgcaa
     1801 acaactttaa gccaatgtgc gatgcgctga atatggcccg tgccgagatg ggcaaaacga
     1861 cgcagcagcg ccactacagc aacgagagca acatgatcgc ccgtatcgtg ctgggtggca
     1921 tgacggcgaa gcagtgagcg caggcaaatg gcattactgg cgaaccacgg gacagcatga
     1981 acgcagcaca gcttgaacac ctcgcctatc tcgaaagcac caatatcacg ttaattgata
     2041 tgggcatgga atatgagcag cgcaaaggag aactcacccg cctgtcgcaa cgctggctcg
     2101 ctaaacgtct ggaggtaaac catgcgtaac cacaatccga tgccgggaag ccgttacaag
     2161 gattcgcacg gggctgtagt gaccgttgag cgcgtcgagc ataaccgagt gaccttttac
     2221 cgcgagggct atcagtcgcc atgtgttcag cctttggaga gattcgttaa tgagttcgtg
     2281 gaggtgcgcc gtgatactga atgaacctgc cgcccagaaa gaagccttta atctggctgg
     2341 cctgttaaca aatgttaacc cttacaacct tataaaacct gatattgata ccgcagcgcc
     2401 cggagttccg ttaccagtac gcgaggcgct taccctcaac aaaaagatgg tgagccgtgc
     2461 acaggaaaaa ctcttaaagg gttacggttt tatctggtat gaccacctag cagagaaaag
     2521 ctgttatagt tcaagcgttg ctgcaaaatc agcaaccggg cgtggaaacc cgaacacact
     2581 cagggcgaca cagacgccga aagcgtcttt ttttgtgtcc gatcactacg cacatcaaat
     2641 cagcggccta gtccgtactg tatcaatggt ggcgttagtg gggctacgtt cgcgtaggcc
     2701 ggtttccttt gtgtccggta tttccacccc tgctaacgtc accgccattt cagagcgtgg
     2761 aaactcaggc ggtgactcct taaacacaaa ggaggctgcc gctatgctgg ctactacccc
     2821 tacccaaaaa ccgcaattta tctggattat cgccgcagtt cgccgcgatt gcccgacaat
     2881 taccgccaaa attcatcata ttgctgccga gtctgaacgc gatgctcgcc gttctctggt
     2941 gcgcgatcac gtctgctttt ttgctggtcg tatccgcatg gaggtggcac atgattaaaa
     3001 cctacgatgt gcatatggat cccctcgaac gcacaagcca gatcatcaca ctgacagaag
     3061 tgattaatga cattctggtg agcaactctc cctcacgaga cgaaaaactg aaggcgttac
     3121 tcgcgatatt ggatctcgcc gttcgtgacg ttcatttcct gctggaaggt ggcgaaatgt
     3181 caggaaaacg gggggcaacc aatgaataac tcaattaata cccctcgcct tacgtccgca
     3241 cttcaattaa tcgagcaaac agcggctgtc ctggttgctg tcagtctttc ggctgaagaa
     3301 atggacgctg ctgatgtcgt ggatgcgatt aaagcgtgct catctttggt taacgatgcc
     3361 cgtgcagagc tggtaattct tgggggtgaa aaatgaatat caacttaatt tatcgtcatc
     3421 cgtgtgagct ggaaattgaa tcattgctgg ggcgcgaaga gccatatcca gacacattca
     3481 ctcccgcaga ttgcgcgact gaacggctta ccagagcgcg cacaggtctg gttcatgtga
     3541 tgaatgagat tgttccctcg gtgggagggg aacaggcgac agtaatcaat agctggctac
     3601 aaaaagttac ctccctgata gatatcagtt taatcgatgt ggagagtgcg aaatgaccaa
     3661 catccagctc attgaagcgc aatgtcgcat cgaacaggtt cagactgttt tagggttctg
     3721 gcttgaaggg gccagcccca gcaacagaga caagttaatg attggcgcgg ttatgtcact
     3781 gctcaatggc gtaccagaag ctattcagga agctgacgaa ttgttgggca aatatgagtt
     3841 acagaatcat tcaggcgagg cgaaacatga ataatttctt aacgttccat gcagaagcaa
     3901 cgcctggcgg cgtaaacatc atgtaccgca gcaacgatgg catgacagaa cgcgttgaga
     3961 ccgtctcata tattgatgcc gtaaatcgtc tggatgccgg ggattatgac gataaaccag
     4021 atgaaggcat gtttatacat ctcgctattg ccagtggcgg caaccaggga tatttcgatt
     4081 acacatcaca gcatcacgtg attatgtggc gctggctgat cgcaacagta ttcatgctgg
     4141 aaatgagaga ggaaaacggc actgtcagca tcattgatga tactggcaat ccttccgaag
     4201 tggctgttta ttccaacggc atcgtcgcca tgccgctgta tccagtagca gagcgcctcg
     4261 ctatggcaaa caacattgag ggcgcgatga tagaacgttt tggcatcgag tctggcacag
     4321 aacgcgccat cattttctac agagccatga tggatgtgga acaaggagca ctgactccat
     4381 ttggtcgtga aacgcttgct gaacttcaca acagctttat agctgaactg aatgaaaacg
     4441 gctggcctga aatggcgctg gcgcactgag gggcgacatg attactaaaa atttccgact
     4501 gaatgcgctg gcgaataagt atgcggcagc actgtataac cacattactt ccaccagcgg
     4561 cggggactat ttcatgattg atgcggacgg cctcgccgtc cgtgtggaaa tcgtcaatgg
     4621 agtaaaaggc gttcgcagcc tgattgatag ctacgcactg gcagccatga aagtgcgcta
     4681 cccgcagtgg gaaatcgtgg ggatcgagct tcttgatcgt tgcgtcacta aggacggatt
     4741 gactgacatc gggcgcgaga tatggcaaag catgattaat gatatgggcg cgaccgtggc
     4801 aggaggcaac catgcgtaat atcgacctta tccgcgaagt gaccagcgcc gcagcagggc
     4861 gctggcctta tgtgctggct gaattgtcta tcgacgtgcc tgattcatcg cgccgccatt
     4921 ctccatgccc tgcatgtggt ggaaaagacc gtttcagatt cgacgacaac gggcgcggta
     4981 gctttatctg caaccagtgt ggcgctggtg acgggctgga tttaatcaag cgggtaaaca
     5041 actgcgacac cacggaggcg gcacagcttg ccgctgacgt gctgggtatt gattaccggg
     5101 cagcgcaaac cgacccggcg gcagcgagcc atagaagaga gcaactggaa gctgaccgcc
     5161 agcagcgtga gcaggagcgc cagaaacagg cagcagagga cgcagagcag cgaagggcta
     5221 cgtttgccca tctgtatgcc ggaatgcgcc agagtgccac acagggcgaa tctgattacc
     5281 tgcaatcaaa agggctgacc gggtttaact atccggttat gccggatggt tcgttattgc
     5341 tggagctggt ggacgaatcc gccgcagtgg cagcagcgca aaccattaca ccgcagggag
     5401 agaagcgact cctgacaggt tcagcaaagc gcggggcata tcacgccgta aacgcgccag
     5461 aatcgccgca gagcgtttta attgccgagg ggctggcgac ggccctttca gttcacctga
     5521 tgcgcccgga cgcgctggca gtggcagcaa ttgacgcggg caacctgcta cccgttgccg
     5581 aagtgatgcg ccggatatat cccgccacgc agattatcat tgccgcagat aacgaccacc
     5641 agcaggacga ccaggcgaac acgggcaaag atgccgcaga gaaagccgcc ttatccgtgg
     5701 ctggctgggt ggcgctgccg ccgacagact acaaagccga ctgggacgac taccgccagc
     5761 aaaacgggct ggaagtcgct acggctgcgt ttaacgattc gatgtaccag attcaagggg
     5821 aagccgtgaa accgcgattg caagccattg agggcggtaa aactgaccat ccagagaaag
     5881 atccactaaa accccacatt gagagccgca aagatagcgt tttctgggta acgccgaagg
     5941 tggacaagga aagcggggag atcgtcaacg ctgaaagctg gttatgttcc ccgttggagg
     6001 ttatcggcac gggacgcgac gacaaagatc agtatcttat tatctcatgg ctggcattcg
     6061 gtgcaggcat accgacaaca gcggctatcc cgctggctga tattggcgag cgtgaaggct
     6121 ggcgcaccct gaaagctggt ggggttaacg tcacgaccaa aagcagttta cgggcgatcc
     6181 ttgccgactg gctacagcgg agcggctcgc gtgaattgtg gcgcgttgct catgctacag
     6241 gctggcagtg cggggcatac atcatgccgg acggggaaat catcggcaca cctgagcggc
     6301 ctgttttgtt cagcgggcgc agttcagccg ctgccgggta taccgtagca ggaacgccgg
     6361 aaagctggcg caacagtgtc gcgcggctgg catacggcaa ctacgcgatg atgacaggca
     6421 ttgccgcagc actggcagcg ccattaatcg gggtggcaga gcgtgacgga ttcgggattc
     6481 atttttatga gcaatcgagc gccgggaaaa caaccacgca gaacgtggct agcagtctat
     6541 acgggaaccc tgatgccttg cgcctgacgt ggtacgggac ggcgctgggg atgataaacg
     6601 aggccgccgc ccacaatgac ggactgatgc cgctggatga agtcggacag ggcgcagacc
     6661 cgataagcgt ttctcagtct gcctatgccc tgtttaacgg cgtagggaaa ttgcagggcg
     6721 cgaaagaagg cggaaatcgg gatctaaaac gctggcgtac cgtggcaatc agcaccgggg
     6781 aaatggattt agaaacgttc attgcctccg caggacgcaa gacaaaagcg gggcaactgg
     6841 tgcgcctgct gaatatcccg ttaagtaagg cggtgcgctt tcatgagcac cagacaggga
     6901 aagaccatgc agacgcatta aaatccgcgt ggcagagcaa tcacggcgct gccgggcggg
     6961 agtggatcag atggcttgca ggccaccagc agcaggccat tgataccgtt cgtgactgtg
     7021 aagcccgctg gcgcagtctt attcctgccg actatgggga acaggttcac cgtgtagggg
     7081 caaggttcgc cattctggag gctgctttac tgctgggtgg cgtggttact ggctgggatg
     7141 atcaaacgtg ccgtgatgcg atacagcaca gctacaatgc gtggttgcgt gagttcggca
     7201 cggggaacaa agagcaccag cagattattg agcagacgga ggcgtttttg aatgcctatg
     7261 ggctgagtcg attcgcgccg ctgggttatg acccgcgcga tttacccatc cgtgatttag
     7321 ccgggtacag gaagaagggg aaccacgacg gcgacccgat aattttctac accttcccgg
     7381 cagcgtttga gcaggagatt gcaaagggct tcaataccaa acagtttgcc gaagttctaa
     7441 agaatgcagg aatgcttaca ccaccaacga gcgggcgagg ctatcagggg cgagtaaggg
     7501 aggatgggcg acagattcgc gtctatgtac tcaatttcat ggcagaggaa agcagccagc
     7561 cagaagaata attatttctt cacatgcgta gttttagtgt tgtctcggtt gtctttgttg
     7621 tctcaatttg taattgagat tgatttataa ggattttatt ttaatttctg agacaacacc
     7681 gagacaacat ttagccattt tgagacaaca gggcgaaagt gtgtttttag tctggcaggc
     7741 agtgagacaa catttatgcc gggtgagaca acacgaaatt gcaaatgttg tctcagcaaa
     7801 acccagacgt ggcgcggcct gtagagccgt gagacaacag agacaacact atttttgctt
     7861 actatgaaaa aaaatcggca ggtgtcccac attaagaaat cgtcattagc aaaactaata
     7921 atccagtgag gggaaaatga cagcacaaat ttcagcatac gggcggctgg tggcagatcc
     7981 ccagacccgc accacaacga acggtaacaa catggctatg gcgcggctgg cggtgtctct
     8041 cccctgtaat gcggcagagg cgggagagtc aaccttctgg ctgggcgtta ttgcttttgg
     8101 gaagcaggcc gatgcgctgg caaagcacca gaaaggcgac cttgtgagcg tggcaggcaa
     8161 tatgcaactc aaccagtgga cagggcagga cggcggtaca cagcaggggt atcaggtagt
     8221 agccgacagt gtgatcagcg ccagaacggt acgccccggc gggaaggcag gacagcgggg
     8281 acaggcaacg gacgcgctga gacgtgcgca gcagccatcc cgtgatgaat acgaccaaag
     8341 cccaccattc gacgatgaaa cgccattctg agagggaaga tatgagtacg caacccatca
     8401 ttattgagtt cggcagctat cgctggccca gacatcttgc aatacatgaa gcaggtcatg
     8461 cgatagccgc atggtttttc ggcatacagg aggtagaaat tgcgttatcg ggtaataacc
     8521 gagtggcaaa aacctacctt agcggcgatg ttgatgaatg tggagctgtc gcggtatggc
     8581 acgccaacta tccacggaat gtggctgagg ttaagtctta caccctctcg aatgatgaca
     8641 ccaggttacg tctgatagac caggtatgcc gggctatggt tatctctctg gctggtatcg
     8701 tcgcgcaatc acgctatacg ggggatgata ttaacgcact gatggaaacg tccgggaaag
     8761 cagacatgaa aaatgttcgt gatttatcag aggtataccg ggtggctggt ggggaggatg
     8821 ctgatataca gagaatatcc ctttcccgtg ctgaggcgct gattgccctg aaatggtgg
//
LOCUS       DADMHM010000164         8816 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.167, whole genome shotgun sequence.
ACCESSION   DADMHM010000164 DADMHM010000000
VERSION     DADMHM010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8816)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8816)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8816
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.167"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            225..473
                     /locus_tag="JN125_003247"
     CDS             225..473
                     /locus_tag="JN125_003247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1158 domain-containing protein"
                     /protein_id="HAY8872914.1"
                     /translation="MKHPLETLTTAAGILLMAFLSCLLLPAPALGLTLAQKLVTMFHL
                     MDLSQLYTLLFCLWFLVLGAIEYFVLRFIWRRWFSLAD"
     gene            538..906
                     /locus_tag="JN125_003248"
     CDS             538..906
                     /locus_tag="JN125_003248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HAY8872915.1"
                     /translation="MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSS
                     ELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKKHWISVYPGEEISEALLRDLIND
                     SWNLVVDGLAKRDQKRVRLG"
     gene            1000..1653
                     /gene="nfsB"
                     /locus_tag="JN125_003249"
     CDS             1000..1653
                     /gene="nfsB"
                     /locus_tag="JN125_003249"
                     /EC_number="1.5.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-insensitive NAD(P)H nitroreductase"
                     /protein_id="HAY8872916.1"
                     /translation="MDIISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSSTNSQ
                     PWHFIVASTEEGKARVAKSAAGNYMFNERKILDASHVVVFCAKTAMVDAWLKLVVDQE
                     DADGRFATPEAKAANDKGRKFFADMHRKDLHDDAEWMAKQVYLNVGNFLLGVAALGLD
                     AVPIEGFDAAILDAEFGLKEKGYTSLVVVPVGHHSVEDFNATLPKSRLPQNITLTEV"
     gene            1761..3008
                     /locus_tag="JN125_003250"
     CDS             1761..3008
                     /locus_tag="JN125_003250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HAY8872917.1"
                     /translation="MQDLISQVGDLAGIEIDHTTSMVMIFGIIFLTAVVVHIILHWVV
                     LRTFEKRAIASSRLWLQIITQNKLFHRLAFTLQGIIVNIQAVFWLQKGTEAADILTTC
                     AQLWIMMYALLSVFSLLDVILNLAQKFPAASQLPLKGIFQGIKLIGAILVGILMISLL
                     IGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGA
                     VIDIGLTTVKVRNWDNTITTIPTWSLVSDSFKNWSGMSASGGRRIKRSISIDVTSIRF
                     LDEDEMQRLNKAHLLKPYLTSRHQEINEWNRQQGSTESILNLRRMTNIGTFRAYLNEY
                     LRNHPRIRKDMTLMVRQLAPGDNGLPLEIYAFTNTVVWLEYESIQADIFDHIFAIVEE
                     FGLRLHQSPAGNDIRSLAGAFKQ"
     gene            complement(3076..4452)
                     /gene="pheP"
                     /locus_tag="JN125_003251"
     CDS             complement(3076..4452)
                     /gene="pheP"
                     /locus_tag="JN125_003251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine transporter"
                     /protein_id="HAY8872918.1"
                     /translation="MKNASTVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLG
                     IGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFAGFL
                     SGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWAAAFFIIINAVNLVNVRLYGET
                     EFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWCYGGFFATGWNGLILSLAVI
                     MFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSN
                     SSPFVMIFHNLDSNEVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTR
                     VSHRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRF
                     RAAMRRQGRETQFKALLYPFGNYLCIAFLGMILLLMCTMDDMRLSAILLPVWIVFLFV
                     AFKTLRRK"
     gene            complement(4554..7697)
                     /gene="cusA"
                     /locus_tag="JN125_003252"
                     /pseudo
     CDS             complement(4554..7697)
                     /gene="cusA"
                     /locus_tag="JN125_003252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415107.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Cu(+)/Ag(+) efflux RND transporter permease
                     subunit CusA"
     gene            complement(7709..>8816)
                     /gene="cusB"
                     /locus_tag="JN125_003253"
     CDS             complement(7709..>8816)
                     /gene="cusB"
                     /locus_tag="JN125_003253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Cu(+)/Ag(+) efflux RND transporter periplasmic
                     adaptor subunit CusB"
                     /protein_id="HAY8872919.1"
                     /translation="RKILFWYDPMYPNTRFDKPGKSPFMDMDLVPKYADEESSASGVR
                     IDPTQTQNLGVKTATVTRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVG
                     DKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLI
                     ATQKIQTRFTLKAPIDGVITAFDLRAGMNIAKDNVVAKIQGMDPVWVTAAIPESIAWL
                     VKDASQFTLTVPARPDKTLTIRKWTLLPGVDAATCTLQLRLEVDNADEALKPGMNAWL
                     QLNTASEPMLLIPSQGLIDTGSEQRVITIDADGRFVPKRVAVFQASQGVTALRSGLAE
                     GEKVVSSGLFLIDSEANISGALERMRSESATHAH"
BASE COUNT         2117 a         2466 c         2178 g         2055 t
ORIGIN      
        1 tccgcacata aaattggtgc atcgagcgcg attgaggccc tgcatcgcca ggtcgtcagc
       61 ggtctgaatg aagcgcagct gatgcgcgat ttcgtcgccg atggtggctc gctgattggg
      121 ctggtgaaaa agcattgtga gatctgggcc ggtgactaag tagggaattg ccttacagaa
      181 gaatatccct gacaatggtg ttttaactta catttaacaa tgttatgaaa caccctttag
      241 aaaccttgac taccgcagca ggcattttgc tgatggcttt cctctcttgc ctgctgctgc
      301 ccgcccccgc actggggctg acgctggcac aaaaactggt gaccatgttc catctgatgg
      361 atcttagcca gctttacact ttattgtttt gtctgtggtt tttagtgctg ggcgctattg
      421 agtattttgt tctgcgcttt atctggcgac gctggttctc gctggcggat taaacgtcga
      481 ttatcgccgt acttcgcggc atactttgct tattctcctt cgcctaaagg aacgtttatg
      541 gataagcaat cactgcacga aacggcgaaa cgcctggccc ttgagttacc ctttgtcgag
      601 ctttgctggc cttttggccc ggagttcgat gtttttaaaa ttggcggcaa aatttttatg
      661 ctgtcgtcgg agctgcgcgg cgtccccttt atcaatctga agtccgatcc acaaaaatcc
      721 ctgttaaatc agcagatata cccgagcatt aagccagggt atcacatgaa taaaaagcac
      781 tggatttcgg tgtatcccgg cgaggaaatc tccgaagcgt tacttcgcga tctgatcaac
      841 gattcgtgga atctggtggt tgatggtctg gctaaacgcg atcaaaaaag agtgcgtcta
      901 ggctaaagcg gaaatctata gcgcattttt ctcgcttacc atttctcgtt gaaccctgta
      961 atctgctggc acgcaaaatt actttcacat ggagtcttta tggatatcat ttctgtcgcc
     1021 ttaaagcgtc attccactaa ggcatttgat gccagtaaaa aacttacccc ggaacaggcc
     1081 gagcagatca aaactctcct gcaatacagc ccatccagca ccaactccca gccgtggcat
     1141 tttattgttg ccagcacgga agaaggtaaa gcgcgtgttg ccaaatccgc tgccggtaat
     1201 tatatgttca acgaacgtaa aatacttgat gcctcgcacg tcgtggtgtt ctgtgcaaaa
     1261 accgcgatgg tcgatgcctg gctgaagctg gttgttgacc aggaagatgc tgatggccgc
     1321 tttgccacgc cggaagcgaa agccgcgaac gataaaggtc gcaagttctt cgctgatatg
     1381 caccgtaaag atctgcatga tgatgcagag tggatggcaa aacaggttta tctcaacgtc
     1441 ggtaacttcc tgctcggcgt ggcggctctg ggtctggacg cggtacccat cgaaggtttt
     1501 gacgccgcca tcctcgatgc agaatttggt ctgaaagaga aaggctacac cagtctggtg
     1561 gttgttccgg taggtcatca cagcgttgaa gattttaacg ctacgctgcc gaaatctcgt
     1621 ctgccgcaaa acatcacctt aaccgaagtg taattctctc ttgccgggca tctgcccggc
     1681 tatttcccct cagattctcc tgatttgcat aaccctgttt cagccgtcat cataggctgc
     1741 tgttgtataa aggagacgtt atgcaggatt taatatccca ggttggggat ttagcgggta
     1801 ttgagatcga tcacaccacc tcgatggtga tgattttcgg tattattttt ctgaccgccg
     1861 tcgtggtgca tattattttg cattgggtgg tactgcggac cttcgaaaaa cgtgccatcg
     1921 ccagttcacg gctttggttg caaatcatta cccagaataa actcttccac cgtttagctt
     1981 ttaccctgca ggggattatc gtcaatattc aggcggtatt ctggctgcaa aaaggcaccg
     2041 aagcggcaga tattctgact acctgcgcgc agttgtggat catgatgtat gcgctgcttt
     2101 cagtcttctc gttgctggat gttattttga atctggcgca gaaattcccg gcggcatctc
     2161 agttaccgct gaaagggata tttcagggga ttaaactgat cggcgcaatc ctggtcggca
     2221 ttttgatgat ctcgctgctg attggtcagt cgccagcgat tctgatcagc ggtcttggtg
     2281 caatggctgc cgtgctgatg ttggtattta aagatccgat tcttggtctg gtggcaggta
     2341 ttcagctttc cgcgaacgat atgctgaaac tgggcgactg gctggagatg ccgaaatacg
     2401 gcgcggatgg cgcggtgatc gatattgggt taaccaccgt caaagtgcgt aactgggaca
     2461 ataccattac cactattccc acctggtctc tggtttctga ctcctttaaa aactggagcg
     2521 ggatgtcagc atctggcggg cgacgtatta agcgcagtat cagtattgat gtcaccagta
     2581 ttcgttttct tgatgaagac gaaatgcaac gtctgaataa agcgcacttg ttaaaacctt
     2641 atttaaccag ccgccatcag gaaattaatg agtggaatcg ccagcaaggt tctacggagt
     2701 cgatattaaa cctgcgccga atgaccaata ttggaacctt tcgtgcctat ctgaacgaat
     2761 atctgcgtaa ccatccgcgg attcgtaaag atatgacctt aatggtacgc caactggctc
     2821 caggtgataa cggtttaccg ctcgagatct acgcgtttac caacaccgtg gtgtggctgg
     2881 aatatgaaag cattcaggct gatatattcg atcacatatt tgcgattgtc gaagagtttg
     2941 gtctgcgact tcatcagtcg ccagccggca atgatattcg ctctctggcg ggtgcattta
     3001 agcagtaatt aaaaaaaccg ctctcatcga atggatgaga gcggacatcg ttttgtcgga
     3061 tgtagcgtga atgccttatt tccgacgcag cgttttaaat gccacaaaca ggaatacaat
     3121 ccacaccggc agcaggatcg ctgacaagcg catatcatcc atcgtgcaca tcagcagcaa
     3181 aatcatgccg aggaaggcaa tgcaaagata gttgccgaac ggataaagca gcgccttaaa
     3241 ctgtgtttca cgtccctgac gtcgcatcgc cgcgcgaaaa cgcagatgcg ccaggcagat
     3301 cataatccag ttcaacagca gcgttgctac caccagcgcc atcagcagac caaacgcttt
     3361 ttgcggcagc agatagttga ttaacaccac cagcgaagtg atcgctccgg aaagcatcag
     3421 cgagttaatc ggcacgccgc gatggctgac gcgagtcaaa aacttcggcg cattaccctg
     3481 cacagaaagg ccaaacagca tgcggctgtt agagtaaacc ccgctgttat acactgacag
     3541 cgatgctacc agaatgacga agttcagcgc agaagctacc tcgttgctgt cgagattatg
     3601 gaaaatcatc acaaacgggc tactgttgga tttcacttcc acccacggat agagcgccag
     3661 taaaaccacc agtgaaccga tgtaaaacag caggatgcga tacaccacct gatttaccgc
     3721 ttttggaatg cttttttccg gatcgcgcgc ttcagcggca gtaatcccaa tcagctccag
     3781 accgccgaag gagaacataa ttaccgccag cgacaaaatc agcccattcc agccggtggc
     3841 gaagaaacca ccgtagcacc agaggttgtc gatactggct ttctcgccgc cgtgaccaga
     3901 aaacagcagc cacaggccaa agccgatcat accgatgatt gccagcactt taatcaacgc
     3961 aaaccagaac tcggtttcgc catataagcg cacgttcacc aggttaacgg cgttgatgat
     4021 aataaagaag gcggcagccc aaatccacgt tggaacatcc gggaaccagt actgcatata
     4081 gatgcccgca gcggtcagct ctgccattcc caccagcacg aacattaccc agtagttcca
     4141 gccagagagg aagcccgcaa acggtcccca gtatttatag gcaaagtggg caaatgaacc
     4201 ggataccggc tcttcgacca ccatctcgcc gagctggcgc ataatcagga aagcgatgat
     4261 cccggcgacg ccgtagccca gcaatacagc cggacccgcc atctgaatcg ccgggccaat
     4321 gccaagaaac agaccagtac caattgcgcc acccagcgca atcagttgaa tatgacggtt
     4381 atgtaatccg cgatgaagcg tcggctcttg attcgacgca gtatcttccg atacggttga
     4441 cgcgtttttc acgcctttcc cctgtgtgtc ttttttgttg aggggcacct tttaacattt
     4501 agtgcccatc gtcgcaagac acaatccaca cggttaaacg gggtatcctg cttttatttc
     4561 cgtacccgat gtcggtgcag ccacatcagc ttatacgccg ccgggataat aaacagcgac
     4621 agcaaaggcg cggtgatcat gccgccaatc atcggtgcgg caatccggct catcacctct
     4681 gaaccagccc ccgttcccca cagaatcggc agcagaccgg cgataatcac cgccaccgtc
     4741 atcgctttcg ggcgcacgcg cagtaccgcg ccgtgataca acgcctcatc cagcttctgc
     4801 tcactgaatg tttgcggatt attcaacgac ggctcggcct ctatggcgtg acgtaaatac
     4861 atcagcatca ccacgccaaa ttcggcggcg cccccggcaa gggcaataaa accggtgccc
     4921 gttgccacag aaagatgaaa gcccatccac cacagcaacc agatgccgcc caccagcgca
     4981 aacggtacgc tgctgataat cagcaacgct tcgcccaccc gacggaatgc cagatacaac
     5041 agcacgaaga tgatcatcag tgtcatcggc accatgagtt tcagcttatg gttggcgcgc
     5101 tccagtagct cgaactgccc ggagaatgcc acgctggtgc ccggttttaa ctgcactttt
     5161 tcaactatcg ctttttgcaa atcgtgaacc accgacacca tgtcacgatc gcgggcatcg
     5221 atataaatcc agctcgtcgg gcgcgcattc tcggttttca gcatcgacgg tccggtagag
     5281 actttaacgt cggccacgtc tgccagggtg atttgctgct tcatcggcgt caggatcggt
     5341 agctggcgca gtgcctgcgg gctatcgcgc cagctttgcg gataacgcag attaatggga
     5401 taacgggcaa tcccttccac cgtttcgcca accatcgccc cgcccaccgc agaagtcaca
     5461 aacaactgca catccgccac cgtcataccg taacgcgcgg ctttttcacg gttaatctca
     5521 acgttgatat agcgcccacc ttccagacgc tcggcaagcg cagaagccac gcctggcacc
     5581 gttcgcgcta cttcttcaat ttgctcagcc atcgcgtcga tatccgccag cacagtgccg
     5641 gaaactttaa tgccgatggg gcttttaatg ccggttgaga gcatatcgat acggttacga
     5701 attggcggca cccacagatt cgccagcccc ggcagccgca cggtgttatc cagtccctca
     5761 atgattttgt ccatcgtcat gccaggccgc cactgatcct gcggcttaag ctggatggtc
     5821 gtttcaacca tctcgagcgg agcagaatcg gtggcggttt ccgctttccc ggttttgcca
     5881 aatacccgcg ccacttcagg tacgctcata attagcttgt cggttttttg cagcatactc
     5941 gccgcctctg ctgcggaaat ccccggcagc gtcgatggca tatacaacaa gtcgccttca
     6001 ttgatctgcg gtaaaaattc cccgccaact ttattgagcg gccagagaac cgtcagcacc
     6061 gaaagcgctg ccaccaacag cgtggttttc ggccagtgca gtactttcag caatagagga
     6121 tgataaacac gaatcaaaaa gcgattgagc gggttactgc tttccggcgg aattttgcca
     6181 cggatccagt aacccatcag gatcgggatc actacgatcg ccagcagcgc cgcacccgcc
     6241 atcgcatacg ttttggtgaa cgccagcggg ccaaacagac gcccttcttg cccttccagg
     6301 gtgaagattg gaataaacga cagcgtgata atcagcagac tgataaacag cgccggcccc
     6361 acttcaacag atgcatcggt aatcacctgc cagcgcgttt tattatccag cgtggcgtca
     6421 ggatgctggt gctgccactc ttccagccgt ttatgcgcat tctcgatcat gacgatagca
     6481 gcatcgacca tcgccccgac ggcaatcgca atgccaccca acgacataat attggcattc
     6541 agtccctgga agtgcatgac aataaaagca atacacaacc ccagcggcaa cgaaataatc
     6601 gccaccagcg ccgagcgcac atgccagaga aacagcgcac agactaccgc caccacaata
     6661 aactcttcca gcaacttgcc gctgaggttg tcgatggcgc ggtcaatgag ctggctgcga
     6721 tcgtatgttg taactatctc cacgccttcc ggcagactac ttttcagcgt ttccagtttg
     6781 tccttcacgg cggcgatcac ttctcgggcg tttttgccgg agcgcaggat caccaccccg
     6841 cccgccactt cgccttcgcc gttcagttcg gcaatgcccc ggcgcatctc cgggccaacc
     6901 tggaccttcg caacatcgcg cagataaacg ggcacgccat tttcactggc ttttaaaacg
     6961 atgtgattaa agtcgtcgag cgtttgcaga tagccgctgg cgcgcaccat atattccgct
     7021 tccgccagtt cgatcgacga accgcccgct tcctagtttg aagcatccag cgcgcttttt
     7081 acttcggcga gactgatgcc atactgcgcc aggcgctggg gatcgataac cacctgatac
     7141 tctttcacca caccgcccac cgacgccact tccgcaacgt cagggatggt tttcagctca
     7201 tatttgagaa accagtcctg taatgagcgt aaatcggcca gatcgtgctt accgctgcga
     7261 tccaccagtg catattcata gatccagcca acacccgtgg catctggccc cagctcggcg
     7321 ctgactcccg caggcagctt accctgtacc tggttgaggt actccagcac ccgcgaacgc
     7381 gcccagtacg gatcggtacc atcttcgaaa atgacataca cataagagtc gccaaactgc
     7441 gagaaaccac gcacagtctt cgcgccaggc accgacaaca tggtggtggt tagcggataa
     7501 gtcacctgat tttcaacgat ttgcggtgcc tgcccgggat agctggtttt aataatcacc
     7561 tgcacatcgg agagatccgg cagcgcatcc actggcgtat taatgatggt ccaggtgccc
     7621 cagatgctaa gaaacaacgc gcccatcagc accaaaaaac ggttcgccac cgagcgacga
     7681 ataatccatt caatcattgg ttattccctc aatgcgcatg ggtagcactt tcagagcgca
     7741 tccgctccag tgcgccagaa atattggctt cggaatcaat caggaaaagg ccgctggaaa
     7801 ccaccttttc accttccgcc agaccagagc gtaatgcggt gacaccttgc gatgcctgga
     7861 aaacggcaac gcgtttcggt acaaagcgcc cgtcggcatc aatggtaatc acccgctgtt
     7921 cgctaccggt atcaatcagc ccttgtgacg gaatgagcag catcggttcg ctggcggtat
     7981 tgagttgcaa ccaggcgttc atgcccggtt ttagcgcctc gtcggcgttg tcgacttcca
     8041 gacgcagctg cagcgtgcag gtcgcggcat ccacgccggg tagcagcgtc catttgcgga
     8101 tggtgagtgt tttatccggt cgtgccggaa cggtgagcgt aaactgcgag gcatctttca
     8161 ccagccaggc gatagactcc gggatcgcag cagtgaccca caccgggtcc ataccctgaa
     8221 ttttcgctac cacgttatct ttggcgatat tcattcccgc gcgcagatca aacgcggtga
     8281 tcacgccatc aatgggcgct ttgagcgtaa agcgagtctg gattttttgc gtggcgatca
     8341 ggcggcgaat atccgcctcc ggcattcccg ccagtcgcag ccgctcaaga atgccttcag
     8401 tctgggtcgc cgtaccgccg gtttcgcgca gcagtaaata ctcactctgc gcttccaccc
     8461 agtcaggaat ggtcaggtcg agaagcggtg tgcccttttg tactttatcg cccacggtaa
     8521 gcggatacac cttgtcgata aacccggcag cgcgagcctg cacaatggca tactgatact
     8581 cgttgtaact gacattcgcc gggaaactct gggcaaaagt cagcggtccg cgcgtgacgg
     8641 tagccgtttt cacccccaga ttctgcgtct gagtcgggtc aatgcgcaca ccagacgcag
     8701 aactctcttc atcggcatat ttcggcacca gatccatatc cataaacggc gatttacctg
     8761 gtttatcgaa ccgcgtattg gggtacatcg ggtcgtacca gaataagatt ttacgt
//
LOCUS       DADMHM010000165         8809 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.168, whole genome shotgun sequence.
ACCESSION   DADMHM010000165 DADMHM010000000
VERSION     DADMHM010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8809)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8809)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8809
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.168"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..221
                     /locus_tag="JN125_003254"
     CDS             <1..221
                     /locus_tag="JN125_003254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8872920.1"
                     /translation="QTVIYRIHPDARNRLTAGYMTSYFIGGAAGSLISASAWQHGGWA
                     GVCLAGATIALVNLLVWWRGFHRQEAAN"
     gene            345..1082
                     /locus_tag="JN125_003255"
     CDS             345..1082
                     /locus_tag="JN125_003255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HAY8872921.1"
                     /translation="MESPTPQPALGSATFMEGCKDSLPIVISYIPVAFAFGLNATRLG
                     FSPLESVFFSCIIYAGASQFVITAMLAAGSSLWVAALTVMAMDVRHVLYGPSLRSRII
                     QRLQKSKTALWAFGLTDEVFAAATAKLVRNNRRWSENWMIGIAFSSWSSWVFGTVIGA
                     FSGSGLLQGYPAVEAALGFMLPALFMSFLLASFQRKQSLCVTAALVGALAGVTLFSIP
                     VAILAGIVCGCLTALIQAFWQGAPDEL"
     gene            1072..1407
                     /gene="ygaH"
                     /locus_tag="JN125_003256"
     CDS             1072..1407
                     /gene="ygaH"
                     /locus_tag="JN125_003256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-valine transporter subunit YgaH"
                     /protein_id="HAY8872922.1"
                     /translation="MSYEVLLLGLLVGVANYCFRYLPLRLRVGNARPTKRGAVGILLD
                     TIGIASICALLVVSTAPEVMHDTRRFVPTLVGFAVLGASFYKTRSIIIPTLLSALAYG
                     LAWKVMAII"
     gene            complement(1426..1527)
                     /locus_tag="JN125_003257"
     CDS             complement(1426..1527)
                     /locus_tag="JN125_003257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005228386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872923.1"
                     /translation="MFNGRKRTIHLGMTSLISADIVTTVTNKVNVLF"
     gene            1498..2028
                     /gene="emrR"
                     /locus_tag="JN125_003258"
     CDS             1498..2028
                     /gene="emrR"
                     /locus_tag="JN125_003258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter EmrAB
                     transcriptional repressor EmrR"
                     /protein_id="HAY8872924.1"
                     /translation="MDSSFTPIEQMLKFRASRHEDFPYQEILLTRLCMHMQSKLLENR
                     NKMLKAQGINETLFMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIE
                     RRESDNDRRCLHLQLTEKGHEFLREVLPPQHNCLHQLWSALSTTEKDQLEQITRKLLS
                     RLDQMEQDGVVLEAMS"
     gene            2155..3327
                     /gene="emrA"
                     /locus_tag="JN125_003259"
     CDS             2155..3327
                     /gene="emrA"
                     /locus_tag="JN125_003259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter periplasmic
                     adaptor subunit EmrA"
                     /protein_id="HAY8872925.1"
                     /translation="MSANAETQTPQQPVKKSGKRKRLLLLLTLLFIIIAVAIGIYWFL
                     VLRHFEETDDAYVAGNQIQIMSQVSGSVTKVWADNTDFVKEGDVLVTLDPTDARQAFE
                     KAKTALASSVRQTYQLMINSKQLQANIEVQKIALAKAQSDYNRRVPLGNANLIGREEL
                     QHARDAVTSAQAQLDVAIQQYNANQAMILGTKLEDQPAVQQAATEVRNAWLALERTRI
                     VSPMTAYVSRRAVQPGAQISPTTPLMAVVPATNMWVDANFKETQIANMRIGQPVTITT
                     DIYGDDVKYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRIELDQKQLEQYS
                     LRIGLSTLVSVNTTNRDGQVLANKVRSTPVAVSTAREISLAPVNKLIDDIVKANAG"
     gene            3344..4918
                     /gene="emrB"
                     /locus_tag="JN125_003260"
     CDS             3344..4918
                     /gene="emrB"
                     /locus_tag="JN125_003260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter permease
                     subunit EmrB"
                     /protein_id="HAY8872926.1"
                     /translation="MQQQKPLEGAQLVIMTIALSLATFMQVLDSTIANVAIPTIAGNL
                     GSSLSQGTWVITSFGVANAISIPLTGWLAKRVGEVKLFLWSTIAFAIASWACGVSSSL
                     NMLIFFRVIQGIVAGPLIPLSQSLLLNNYPPAKRSIALALWSMTVIVAPICGPILGGY
                     ISDNYHWGWIFFINVPIGVAVVLMTLQTLRGRETRTERRRIDAVGLALLVIGIGSLQI
                     MLDRGKELDWFSSQEIIILTVVAVVAVVAVVAVVAVVAICFLIVWELTDDNPIVDLSL
                     FKSRNFTIGCLCISLAYMLYFGAIVLLPQLLQEVYGYTATWAGLASAPVGIIPVILSP
                     IIGRFAHKLDMRRLVTFSFIMYVVCFYWRAYTFEPGMDFGASAWPQFIQGVAVACFFM
                     PLTTITLSGLPPERLAAASSLSNFTRTLAGSIGTSITTTMWTNRESMHHAQLTESVNP
                     FNPNAQAMYSQLEGLGMTQQQASGWIAQQITNQGLIISANEIFWMSAGIFLVLLGLVW
                     FAKPPFGAGGGGGGAH"
     gene            complement(4982..5497)
                     /gene="luxS"
                     /locus_tag="JN125_003261"
     CDS             complement(4982..5497)
                     /gene="luxS"
                     /locus_tag="JN125_003261"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008458247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HAY8872927.1"
                     /translation="MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPN
                     KEVMPERGSHTLEHLFAGFMRNHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVAD
                     AWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
                     LPKEKLQELHI"
     gene            complement(5647..7203)
                     /gene="gshA"
                     /locus_tag="JN125_003262"
     CDS             complement(5647..7203)
                     /gene="gshA"
                     /locus_tag="JN125_003262"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HAY8872928.1"
                     /translation="MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTLATTGH
                     PEALGSALTHKWITTDFAEALLEFITPVDGDIEHMLTFMRDLHRYTARNMGDERMWPL
                     SMPCYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFW
                     QAKCGDISGTDAKEKISAGYFRVIRNYYRFGWVIPYLFGASPAIFSSFLQGKPTSLPF
                     EKTECGMYYLPYATSLRLSDLGYTNKSQSNLGITFNDLYEYVAGLKQAIKTPSEEYAK
                     IGIEKDGKRLQINSNVLQIENELYAPIRPKRVTRSGESPSDALLRGGIEYIEVRSLDI
                     NPFSPIGVDEQQVRFLDLFMVWCALADAPEMSSSELACTRVNWNRVILEGRKPGLTLG
                     IGCETAQFPLPQVGKDLFRDLKRVAQTLDSINGGEAYQKVCDELVACFDNPDLTFSAR
                     ILRSMIDTGIGGTGKAFAEAYRNLLREEPLEILREEDFVAEREASERRQQEMETADTE
                     PFAVWLEKHA"
     gene            complement(7276..7704)
                     /locus_tag="JN125_003263"
     CDS             complement(7276..7704)
                     /locus_tag="JN125_003263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HAY8872929.1"
                     /translation="MSEALSLFSLFARSFLSATLLPGNSEVVLVAMLLSGISYPWVLV
                     LTATMGNSLGGLTNVILGRFFPLRKTSRWQEKATGWLKRYGAVTLLLSWMPVVGDLLC
                     LLAGWMRISWGPVIFFLCLGKALRYVAVAAATVQGMMWWH"
     gene            complement(7701..8264)
                     /gene="yqaB"
                     /locus_tag="JN125_003264"
     CDS             complement(7701..8264)
                     /gene="yqaB"
                     /locus_tag="JN125_003264"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-1-phosphate/6-phosphogluconate
                     phosphatase"
                     /protein_id="HAY8872930.1"
                     /translation="MYERYAGLIFDMDGTILDTEPTHRKAWREVLGHYGLQYDVQAMI
                     ALNGSPTWRIAQAIIELNQADLDPHALAREKTEAVRSMLLDSVEPLPLVEVVKSWHGR
                     RPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADHVKHHKPAPDTFLCAQRMGVQPTQ
                     CVVFEDADFGIQAARAAGMDAVDVRLL"
     gene            complement(8545..8621)
                     /locus_tag="JN125_003265"
     tRNA            complement(8545..8621)
                     /locus_tag="JN125_003265"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8585..8587),aa:Arg,seq:acg)
BASE COUNT         2055 a         2304 c         2234 g         2216 t
ORIGIN      
        1 accagacggt aatttatcga atacaccctg atgcgcgtaa tcgcctgacc gcaggttaca
       61 tgaccagcta ctttattggc ggtgccgccg gttcgctaat ttcagcctca gcctggcaac
      121 atggcggttg ggctggtgtt tgtctggctg gcgcgacgat tgccctggtt aacttactgg
      181 tctggtggcg aggttttcat cgtcaggaag ccgcaaatta agcaatcagc aaccgttttc
      241 gtggctttac acttataagg gtgttaagaa gcccatcagt ctgataaggt taagatattc
      301 attcagtcta tttataatat taacaatcgt taagcgtaca ctctatggaa agccctactc
      361 cacagcctgc tcttggttcg gcgaccttca tggaaggatg caaagacagt ttaccgattg
      421 ttattagtta tattccggtg gcctttgcgt tcggtctgaa tgcgacccgt ctgggattct
      481 ctcctctcga aagcgttttt ttctcctgca tcatttatgc aggcgcgagc cagttcgtca
      541 ttaccgcgat gctggcagcc gggagtagtt tgtgggttgc tgcactgacc gtcatggcaa
      601 tggatgttcg ccatgtgttg tatggcccgt cactgcgtag ccgtattatt cagcgtctgc
      661 aaaaatcgaa aaccgccctg tgggcatttg gcctgacgga tgaggttttt gccgctgcaa
      721 ccgcaaaact ggtacgcaat aatcgccgct ggagcgagaa ctggatgatc ggcattgcct
      781 tcagttcatg gtcatcgtgg gtatttggta cggtaatagg ggcattctcc ggcagcggct
      841 tgctgcaagg ttatcccgcc gttgaagctg cattaggttt tatgcttccg gcactcttta
      901 tgagtttcct gctcgcctct ttccagcgca aacaatctct ttgcgttacc gcagcgttag
      961 ttggtgccct tgcaggcgta acgctatttt ctattcccgt cgccattctg gcaggcattg
     1021 tctgtggctg cctcactgcg ttaatccagg cattctggca aggagcgccc gatgagctat
     1081 gaggttctgc tgcttgggtt actggttggc gtggcgaatt attgcttccg ctatttgccg
     1141 ctgcgcctgc gtgtgggtaa tgcccgccca accaaacgtg gcgcggtagg tattttgctc
     1201 gacaccattg gcatcgcctc gatatgcgct ctgctggttg tctctaccgc accagaagtg
     1261 atgcacgata cacgccgttt cgtgcccacg ctggtcggct tcgcggtact gggtgccagt
     1321 ttctataaaa cacgcagcat tatcatccca acactgctta gtgcgctggc ctatgggctc
     1381 gcctggaaag tgatggcgat tatataaccc acaagaatca tttttctaaa acaatacatt
     1441 tactttattt gtcactgttg ttactatatc ggctgaaatt aatgaggtca tacccaaatg
     1501 gatagttcgt ttacgcccat tgaacaaatg ctaaaatttc gcgccagccg ccacgaagat
     1561 tttccttatc aggagatcct tctgactcgt ctttgcatgc acatgcaaag caagctgctg
     1621 gagaaccgca ataaaatgct gaaggctcag gggattaacg agacgttgtt tatggcgttg
     1681 attacgctgg agtctcagga aaaccacagt attcagcctt ctgaattaag ttgtgctctt
     1741 ggatcatccc gtaccaacgc gacgcgtatt gccgatgaac tggaaaaacg cggttggatc
     1801 gaacgtcgtg aaagcgataa cgatcgccgc tgcctgcatc tgcaattaac ggaaaaaggt
     1861 cacgagtttt tgcgcgaggt tttaccaccg cagcataact gcctgcatca actctggtcc
     1921 gcgctcagca caacagaaaa agatcagctc gagcaaatca cccgcaaatt gctctcccgt
     1981 ctcgaccaga tggaacaaga cggtgtggtt ctcgaagcga tgagctaacg cgtcatctcg
     2041 ctcaaaaatc cagatttata aaagaaaaaa tgaccggcca gcatcgcaac atgctggcct
     2101 ttttggcaag caggtcggct cagccgatga gttaagaaga tcgtggagaa caatatgagc
     2161 gcaaatgcgg agactcaaac cccgcagcaa ccggtaaaga agagcggcaa acgtaagcgt
     2221 ctgctcctcc ttctcacctt gctctttata attattgccg tagcgatagg gatttattgg
     2281 tttttggtac tgcgtcattt cgaagaaacc gatgacgcat acgtggcagg gaatcagatt
     2341 caaattatgt ctcaggtgtc tggcagcgtg acgaaagtct gggccgataa caccgatttt
     2401 gtaaaagaag gcgatgttct ggtcactctc gacccgacag atgctcgcca ggcgtttgaa
     2461 aaagccaaaa ctgcactggc ttccagcgtt cgccaaacct accagctgat gattaacagc
     2521 aaacagttac aggcgaatat tgaggtgcaa aaaatcgccc tcgcgaaagc acaaagcgac
     2581 tacaaccgcc gtgtgccgct gggcaatgcc aacctgattg gtcgcgaaga gctgcaacac
     2641 gcccgcgacg ccgtcaccag tgcccaggcg caactggacg tcgctattca acaatacaat
     2701 gccaatcagg cgatgattct ggggactaaa ctggaagatc agcctgccgt gcaacaggct
     2761 gccaccgaag tacgtaacgc ctggctggcg ctggagcgta cccgtattgt cagtccgatg
     2821 accgcttatg tctcccgccg cgcggtacag cctggggcgc aaattagccc aacgacgccg
     2881 ctgatggcgg tcgttccagc caccaatatg tgggtggatg ccaactttaa agagacgcag
     2941 attgccaata tgcgtatcgg tcagccggtc actatcacca cggatattta cggcgatgat
     3001 gtgaaataca ccggtaaagt ggttggtctg gatatgggca caggtagcgc attctcactg
     3061 cttccggcgc aaaatgcgac cggtaactgg atcaaagtcg ttcagcgtct acctgtgcgt
     3121 atcgaactgg accagaaaca gctggagcaa tactcgctgc gcattggttt gtccacgctg
     3181 gtgagcgtca ataccactaa ccgtgacggt caggtactgg caaataaagt acgttcaaca
     3241 ccggtcgcgg taagtaccgc gcgtgaaatc agcctggcac ctgtcaataa actgatcgac
     3301 gatatcgtaa aagctaacgc tggctaatcc agaggtgcgt gtgatgcaac agcaaaaacc
     3361 gctggaaggc gcgcaactgg tcattatgac gattgcgctg tcactggcga cattcatgca
     3421 ggtgctggac tccaccattg ctaacgtggc gatccccact atcgccggga atctgggctc
     3481 atcgctcagc cagggaacgt gggtaatcac ttctttcggg gtggcgaatg ccatctcgat
     3541 cccgcttacc ggctggctgg caaagcgcgt cggggaagtg aaactgttcc tttggtccac
     3601 catcgccttt gctattgcgt cgtgggcgtg tggtgtctcc agcagcctga atatgctgat
     3661 cttcttccgt gtgattcagg ggattgtcgc tgggccgttg atcccacttt cgcaaagtct
     3721 tttgctgaat aattacccgc cagccaaacg ctcaatcgcg ctggcgttgt ggtcgatgac
     3781 ggtgattgtc gcgccaattt gcggcccaat cctcggcggt tatatcagcg ataattacca
     3841 ctggggctgg atattcttca tcaacgtgcc aattggcgtg gcggtggtgt tgatgacact
     3901 gcaaaccctg cgcggacgcg aaacccgcac cgaacggcgg cggattgatg ccgtggggct
     3961 ggcactgctg gttattggta tcggtagcct gcagattatg ctcgaccgcg gtaaagagct
     4021 ggactggttt tcatcacagg aaattatcat tcttaccgtg gtggcggtgg tggcggtggt
     4081 ggcggtggtg gcggtggtgg cggtggtggc tatctgcttc ctgattgtct gggagctgac
     4141 cgacgataac ccgatagtcg atctgtcgtt gtttaagtcg cgcaacttca ccatcggctg
     4201 cttgtgtatc agcctcgcgt atatgctcta cttcggcgcg attgttctgc tgccgcagtt
     4261 gttgcaggag gtctacggtt acacggcgac ctgggcaggt ttggcctctg cgccggtagg
     4321 gattattccg gtgatcctgt cgccgattat cggccgcttc gcgcataaac tggatatgcg
     4381 gcggctggta accttcagct ttattatgta tgtcgtctgc ttctactggc gtgcctatac
     4441 ctttgaacca ggtatggatt ttggcgcgtc ggcctggccg cagtttatcc agggggttgc
     4501 ggtggcctgc ttctttatgc cgctgaccac cattacgctg tctggtttgc caccggaacg
     4561 actggcggcg gcatcgagcc tctctaactt tacgcgaacg ctggcggggt ctatcggcac
     4621 gtcgataacc acgaccatgt ggaccaaccg cgagtcgatg caccatgcgc agttgactga
     4681 gtcggtaaac ccgttcaacc cgaatgccca ggcgatgtac agtcaactgg aagggcttgg
     4741 gatgacgcaa cagcaggcat caggctggat tgcccagcag atcactaatc aggggctgat
     4801 tatttccgcc aatgagatct tctggatgtc agccgggata ttcctcgtcc tgctggggct
     4861 ggtgtggttt gctaaaccgc cctttggcgc aggtggcggc ggaggtggtg cgcactaagt
     4921 acaactaagc cagttcattt gaactggctt ttttcaatta attgtgaaga tagtttactg
     4981 actaaatgtg cagttcctgc aacttctctt tcggcagtgc cagttcttcg ttgctgttga
     5041 tgcgtacgtc acgttccaga atgctacgcg caatatcctg cgcttcctgc aacgagtgca
     5101 tctggtaagt gccacactgg tagacgttca gctccgggat ctgattctga tcctgcactt
     5161 tcagcacgtc ttccattgcc gctttccagg catcagcaac acgctgctca tctggcgtac
     5221 caatcagact catataaaaa ccggtgcggc agcccattgg cgagatatcg ataatctcta
     5281 caccattacc gttaagatgg ttacgcataa aaccagcaaa caggtgctcc agagtatggc
     5341 tccctctttc tggcatcact tctttgttcg gcacgcagaa gcgcagatcg aacacggtga
     5401 ttgcgtcgcc atgcggggtg ttcattgttt tcgccacccg aactgcaggc gcttccatcc
     5461 gggtatgatc gactgtgaag ctatctaaca acggcattta gccacctccg gtaatttttt
     5521 taaaaatttt ctgaactctt tcttcccagg cgagtctgag tatatgaaag acgcgcattt
     5581 gttatcatca tccctgaatt cagagatgaa attttggcca ctcacgagtg gcctttttct
     5641 tttctgtcag gcgtgttttt ccagccacac cgcaaacggt tcggtatcag cggtttccat
     5701 ttcctgctga cggcgttcag atgcctcgcg ctcggctaca aaatcctctt cgcgcagaat
     5761 ttccaacggc tcttcacgca gcagattacg gtaggcttct gcaaacgctt tgcctgttcc
     5821 gccaatacca gtatcaatca tagaccttaa gatacgggca gagaaagtca gatcgggatt
     5881 atcgaagcag gcgaccagtt catcacacac tttctgatac gcttcgccgc cgttaatgct
     5941 atccaacgtt tgcgcgacgc gtttcagatc gcggaacaga tctttaccca cctgcggtaa
     6001 cgggaactgc gcggtttcgc agccgatacc cagcgtcagg cccggtttgc gaccttcgag
     6061 gatcacccgg ttccagttaa cgcgtgtaca ggcaagttcg ctactgctca tttccggtgc
     6121 atcagccagc gcacaccaga ccataaacag gtcgaggaat cgcacctgct gttcatctac
     6181 accaatcggc gagaacgggt tgatgtccag cgaacgcact tcaatatatt caatgccgcc
     6241 acgtaacagc gcatcagaag gtgactcgcc gctgcgggta acgcgttttg gacgaatcgg
     6301 cgcatacagt tcgttttcaa tttgcagcac gttgctattg atttgcagcc tcttaccgtc
     6361 tttctcaata ccaatcttcg cgtactcttc cgatggcgtt ttgattgcct gtttaaggcc
     6421 cgctacgtac tcgtaaagat cgttgaaggt aataccaaga ttgctttgcg atttattggt
     6481 atagccgaga tcgctcaaac gaagagaggt cgcatacggc aggtaataca taccgcactc
     6541 ggttttctca aacggcagcg acgttggttt tccttgcagg aaagaagaaa aaatcgccgg
     6601 agatgcacca aacagataag gaatgaccca accgaaacga tagtaattgc ggataacgcg
     6661 gaaatagccc gcagaaattt tctctttggc atcagtgccc gagatatcac cgcacttcgc
     6721 ttgccagaat gccattggca aagagaaatt gtagtgcacg ccggaaatgg tttgcatcag
     6781 cgcgccgtag cgatttttca gcccttcacg atacagcgtt ttaaagcgtc cggtgttaga
     6841 agtgccgtac tgtgccagtt cgatgtcctg accttctgcg atgtagcatg gcatacttaa
     6901 cggccacatc cgctcatcgc ccatattgcg cgccgtataa cgatgcagat cgcgcataaa
     6961 ggtcaacata tgttcaatat caccatccac tggtgtaatg aattccagca atgcttccgc
     7021 aaaatcggta gtaatccatt tgtgcgtcag tgcggaacct aatgcttcag gatgacctgt
     7081 tgttgccagt gtgccatcag cattaacacg caaagtttcg cgctccagcc cacgctgtat
     7141 cccctttaac gcctgaggat gtttttccag ccaggccagc gcctgtgata cgtccgggat
     7201 caaattgacc tcccgcctgt caaaatcgtt ttaattagca taactgtaat ggtgaccata
     7261 tgtgcaggcc tacaattagt gccaccacat catgccctga acggtagctg ctgcaactgc
     7321 aacatagcgt aacgctttac caaggcacaa aaaaaagatt accggtcccc acgagatgcg
     7381 catccatccc gctaacagac acagtaaatc gccaaccacg ggcatccagc ttaataatag
     7441 cgtgactgca ccatagcgtt tcagccagcc agtagctttc tcttgccagc gcgatgtttt
     7501 acgcaatgga aagaaacgcc caaggataac gttagttaac cctccaaggc tattacccat
     7561 tgttgctgtt aaaactaaaa cccagggata actgatcccg gaaagcaaca ttgccaccag
     7621 cacgacttcg gagttgccgg gtaatagtgt agcgctgaga aaactacggg caaacaacga
     7681 gaaaagcgat aacgcttcac tcacagcaag cgaacatcca cggcgtccat gcctgctgca
     7741 cgggccgcct gaataccgaa atcggcatct tcaaagacca cacactgcgt cggttgcacg
     7801 cccatacgct gcgcgcacaa aaatgtgtct ggcgcgggtt tatggtgttt gacgtgatca
     7861 gcagcgacga cggcgtcaaa ataacggcgt aatcccaggt gcgccagcaa tgcctcagcg
     7921 atggcgcttt cactccccgt tcctacagcc attgggcgac gaccatgcca acttttcacc
     7981 acttcaacaa gaggaagcgg ctcgacacta tccagcagca tacttcttac tgcttctgtt
     8041 ttttcacgcg ctaacgcatg cgggtcgaga tcggcctgat tcagctcaat aattgcctga
     8101 gcaatacgcc aggtgggcga tccattaagc gcaatcattg cctgaacatc gtactgaaga
     8161 ccgtagtgcc ctaatacttc gcgccacgct ttacggtgcg taggctccgt atccaggatt
     8221 gtgccatcca tatcaaaaat taaacctgca taacgctcgt acatggtctt ctcgcaagtc
     8281 gaaaaatatg acgctacttt agcgtaattg cttgattttg tcgctgatgg cgaaggagaa
     8341 gaaaattcag gaaatggata aagtagttat ttagaaatga gatatttttg aaggaaattt
     8401 ttgggagaag atggtgcatc cgggaggatg actcactggc gttcgccctt cgggccgttg
     8461 ctgacgcaac gttatcctcc ctggtgcctg cggttaatac cgctatctct tcgatacctt
     8521 cattgctgaa ggttacggag aatatggtgc atccgggagg attcgaacct ccgaccgctc
     8581 ggttcgtagc cgagtactct atccagctga gctacggatg catcgggaaa atttatttta
     8641 ctgctgatat tgatatcgct actaaagcca tatcaagtaa gagatggtgc atccgggagg
     8701 attactcgcc ttgcggctcg cccttcgggc cgttgctaaa gcaacgttat catccctggt
     8761 gcctgcggtt aattccgcta cctcttcgat accttcattg ctgaagatt
//
LOCUS       DADMHM010000166         8729 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.169, whole genome shotgun sequence.
ACCESSION   DADMHM010000166 DADMHM010000000
VERSION     DADMHM010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8729)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8729)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8729
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.169"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            243..1154
                     /gene="ttdA"
                     /locus_tag="JN125_003266"
     CDS             243..1154
                     /gene="ttdA"
                     /locus_tag="JN125_003266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L(+)-tartrate dehydratase subunit alpha"
                     /protein_id="HAY8872931.1"
                     /translation="MMSESNKQQAVNKLTEIVANFTAMISTRMPDDVVDKLKQLKDAE
                     TSSMGKIIYHTMFDNMQKAIDLNRPACQDTGEIMFFVKVGSRFPLLGELQSILKQAVE
                     EATVKAPLRHNAVEIFDEVNTGKNTGSGVPWVTWDIIPDNDDAEIEVYMAGGGCTLPG
                     RSKVLMPSEGYEGVVKFVFENISTLAVNACPPVLVGVGIATSVETAAVLSRKAILRPI
                     GSRHPNPKAAELELRQEEGLNRLGIGPQGLTGNSSVMGVHIESAARHPSTIGVAVSTG
                     CWAHRRGTLLVHADLTFENLSHTRSAL"
     gene            1151..1739
                     /gene="ttdB"
                     /locus_tag="JN125_003267"
                     /pseudo
     CDS             1151..1739
                     /gene="ttdB"
                     /locus_tag="JN125_003267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311972.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L(+)-tartrate dehydratase subunit beta"
     gene            1788..3251
                     /locus_tag="JN125_003268"
     CDS             1788..3251
                     /locus_tag="JN125_003268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-tartrate/succinate antiporter"
                     /protein_id="HAY8872932.1"
                     /translation="MKPSTEWWRYLAPLAVIAIIALIPVPAGLESHTWLYFAVFTGVI
                     VGLILEPVPGAVVAMVGISIIAILSPWLLFSPEQLAQPGFKFTAKSLSWAVSGFSNSV
                     IWLIFAAFMFGTGYEKTGLGRRIALILVKKMGHRTLFLGYAVMFSELILAPVTPSNSA
                     RGAGIIYPIIRNLPPLYQSQPNDSSSRSIGSYIMWMGIVADCVTSAIFLTAMAPNLLL
                     IGLMKSASHATLSWGDWFLGMLPLSILLVLLVPWLAYVLYPPVLKSGDQVPRWAETEL
                     QAMGPLCSREKRMLGLMVGALVLWIFGGDYIDAAMVGYSVVALMLLLRIISWDDIVSN
                     KAAWNVFFWLASLITLATGLNNTGFISWFGKLLAGSLSGYSPTMVMVALIVVFYLLRY
                     FFASATAYTSALAPMMIAAALAMPEIPLPVFCLMVGAAIGLGSILTPYATGPSPIYYG
                     SGYLPTADYWRLGAIFGLIFLVLLVITGLLWMPVVLL"
     gene            complement(3294..4307)
                     /gene="tsaD"
                     /locus_tag="JN125_003269"
     CDS             complement(3294..4307)
                     /gene="tsaD"
                     /locus_tag="JN125_003269"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001264383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HAY8872933.1"
                     /translation="MRVLGIETSCDETGIAIYDDEKGLLANQLYSQVKLHADYGGVVP
                     ELASRDHVRKTVPLIQAALKESGLTAKDIDAVAYTAGPGLVGALLVGATVGRSLAFAW
                     NVPAIPVHHMEGHLLAPMLEDNPPEFPFVALLVSGGHTQLISVTGIGQYELLGESIDD
                     AAGEAFDKTAKLLGLDYPGGPLLSKMAAQGTAGRFVFPRPMTDRPGLDFSFSGLKTFA
                     ANTIRDNGTDDQTRADIARAFEDAVVDTLMIKCKRALDQTGFKRLVMAGGVSANRTLR
                     AKLAEMMKKRRGEVFYARPEFCTDNGAMIAYAGMVRFKAGATADLGVSVRPRWPLAEL
                     PAA"
     gene            4544..4759
                     /gene="rpsU"
                     /locus_tag="JN125_003270"
     CDS             4544..4759
                     /gene="rpsU"
                     /locus_tag="JN125_003270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HAY8872934.1"
                     /translation="MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTE
                     RKRAKASAVKRHAKKLARENARRTRLY"
     gene            4870..6615
                     /gene="dnaG"
                     /locus_tag="JN125_003271"
     CDS             4870..6615
                     /gene="dnaG"
                     /locus_tag="JN125_003271"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HAY8872935.1"
                     /translation="MAGRIPRVFINDLLARTDIVDLIDTRVKLKKQGKNFHACCPFHN
                     EKTPSFTVNGEKQFYHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAG
                     SGPSQIERHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGF
                     APPGWDNVLKRFGGNPENRQSLIDAGMLVTNDQGRSYDRFRERVMFPIRDKRGRVIGF
                     GGRVLGDDTPKYLNSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQY
                     GINYAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQ
                     LRFMFLPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLS
                     TLALPLISQVPGETLRIYLRQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTT
                     MRILIGLLVQNPELATLVPPLENLDENKLPGLGLFRELVNTCLSQPGLTTGQLLEHYR
                     GTNNAATLEKLSMWDDIADKNIAEQTFTDSLNHMFDSLLELRQEELIARERTHGLSNE
                     ERLELWTLNQELAKK"
     gene            6810..8651
                     /gene="rpoD"
                     /locus_tag="JN125_003272"
     CDS             6810..8651
                     /gene="rpoD"
                     /locus_tag="JN125_003272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HAY8872936.1"
                     /translation="MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDI
                     IQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYM
                     REMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSD
                     LITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSTDDDNSIDPELAR
                     EKFAELRAQYVVTRDTIKAKGRSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVM
                     MDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVS
                     EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAK
                     KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI
                     RIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISME
                     TPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGID
                     MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD"
BASE COUNT         2103 a         2331 c         2334 g         1961 t
ORIGIN      
        1 ctgcaagtct ttggctaaag gccagctatt cagcatcgtt aattatccgc agttgtgata
       61 agcgcagtgt atttcgcaaa acattgccat tccctgctct ggcgcaatat tcattcttat
      121 tttcgcgttg attcacgaac tgttaattac atattcacgg tggcaaaaaa tataaaacca
      181 catttttagt ggtagtttgt ggcggtgaat ttttccagac aaatacaaaa actggagttg
      241 ccatgatgag cgaaagtaat aagcaacagg cagtgaataa gttgacagag attgtcgcta
      301 actttaccgc catgatttct acccgaatgc ctgatgacgt ggtggataaa ctaaaacagc
      361 taaaggatgc cgaaacgtcg tcgatgggga aaattatcta ccatacgatg ttcgacaaca
      421 tgcaaaaagc gattgacctg aatcgtcctg cctgtcagga caccggggag attatgttct
      481 tcgttaaagt cggttcccgc ttcccactgc ttggcgagct gcaaagcata ctcaaacaag
      541 ccgtggaaga ggcaaccgtc aaagcgccac tacgtcacaa tgcggtagaa atttttgacg
      601 aagtaaacac cggcaaaaat accggtagcg gcgtaccgtg ggtcacctgg gacatcatcc
      661 ccgacaatga cgatgcggaa atcgaagttt acatggcagg tggcggctgc acgctacctg
      721 gccgctcgaa agtgttaatg ccgtcagaag gctacgaagg cgtggtgaaa ttcgtcttcg
      781 aaaatatctc caccctcgcc gtaaacgcct gtccaccggt actggtgggc gtgggcatcg
      841 ccacctcggt ggaaaccgcc gccgtactct cgcgtaaagc cattttgcgc ccgattggca
      901 gccgccatcc caatccaaaa gcggcagaac tggagctacg ccaggaagaa ggactcaacc
      961 gtctggggat tggtccacaa gggctgactg gcaacagttc agtgatgggc gtacatatcg
     1021 aatctgccgc ccgccatccg tcaaccatcg gcgttgctgt ctctaccggc tgctgggcgc
     1081 atcgtcgcgg cacactgctg gttcatgccg atctcacctt tgaaaatctg tctcacaccc
     1141 ggagcgcgtt atgaaaaaga tcctgacaac cccgatcaaa gctgaagatc tgcaagatat
     1201 tcgcgtcggc gatgtgatct acctgaccgg tacgctggtg acctgccgtg acgtttgtca
     1261 ccgccgcttg atcgaactga aacgtccgct cccttacgat ctcaacggca aagcgatttt
     1321 ccacgctggc cccatcgtgc gcaaaaacgg cgataaatgg gagatggttt ccgttggccc
     1381 gacaaccagt atgcgtatgg aaagttttga acgtgaattt atcgagcaga ccggcgtgag
     1441 gcggaatggg gccgctgacc gaagaaggct gccagaaatt caaggcgcta catgtgattt
     1501 tcccggcagg ctgcgcggtg ctggcggcaa cccaggtgga agagattgaa gaagtgcact
     1561 ggacagagct cggaatgccg gagtcgctgt gggtctgccg ggtcaaagag ttcggcccgc
     1621 tgattgtctc tattgatacc cacggcaaca atctgatagc cgaaaacaaa aagctgttcg
     1681 ccgaacgccg cgatcccatc gtggaagaga tctgcgagca cgtccattac atcaaataac
     1741 cctcccggag aggctcgtcc cctctccttt ttcgcaggca taacacgatg aaaccttcca
     1801 ctgaatggtg gcgatacctt gcgccgctgg cggtcatcgc cattattgct ctaattccgg
     1861 ttcccgcagg gctggagagt catacctggc tctactttgc cgtttttact ggcgtgatcg
     1921 ttggactgat cctcgaaccc gtgccgggtg ccgtggtggc gatggtgggt atctccatca
     1981 tcgccatact ctctccctgg ctgctgttca gccccgaaca gctcgcccag ccaggcttta
     2041 agttcaccgc caaatccctc tcctgggcag tttctggttt ttctaattcg gttatctggc
     2101 tcattttcgc cgcctttatg tttggcacag gctatgaaaa aaccgggctt ggacgccgca
     2161 ttgcgctgat tctggtgaaa aagatgggac atcgcacgct gtttctcggc tatgcggtga
     2221 tgttctccga gctgatcctc gcacctgtaa caccgtccaa ctcggcgcgt ggtgcgggga
     2281 ttatctatcc catcatccgt aacctgccac cgctctatca atcacaacca aacgacagca
     2341 gttcgcgcag cattggctcg tacatcatgt ggatggggat tgttgccgac tgcgtgacca
     2401 gcgccatttt cttgacggcg atggcaccaa acttgctgtt aattggactg atgaaaagcg
     2461 catctcacgc cacgctgagt tggggcgact ggttcctcgg gatgttgccg ctcagtattt
     2521 tgctggtgct gctggttccc tggctggctt atgtgctgta cccgccggta ctgaagtctg
     2581 gcgatcaggt gccgcgctgg gcagagacgg aactgcaggc aatgggcccg ctctgttcgc
     2641 gtgaaaaacg gatgctgggg ctgatggtag gcgcgctggt gctgtggatt ttcggcggtg
     2701 attatatcga tgccgcgatg gtcggttaca gcgtggtggc actgatgctg cttctgcgca
     2761 ttatcagttg ggacgacatt gtcagtaata aagcggcgtg gaacgttttc ttctggctgg
     2821 cctcgcttat caccctcgct accggactca acaacactgg ttttattagc tggtttggca
     2881 aactgttagc aggcagctta agcggttatt cgccaacgat ggtgatggtg gcgttgattg
     2941 tggtgtttta tctgctgcgc tactttttcg ccagcgccac ggcgtatacc tccgccctcg
     3001 caccgatgat gattgccgct gcgctggcga tgccggaaat cccgctgccg gtgttctgcc
     3061 tgatggttgg cgcggcaatt ggtctgggga gcattcttac accatacgcc accggaccca
     3121 gtccgattta ctacggtagt ggttatctgc caacggcgga ttactggcga ctgggggcga
     3181 tttttgggct gatattcctc gtgttgctgg tgattaccgg cttactgtgg atgcccgtgg
     3241 tgttgcttta ggtgaggacg gtgccggaaa ttgctctccg gcacccaata gttttacgca
     3301 gccggtaact ccgccagcgg ccagcgcgga cgcacgctaa cgccgagatc cgccgtcgcg
     3361 cctgctttaa accgcaccat tccggcatag gcgatcatcg cgccgttatc agtacaaaac
     3421 tccggacgcg cgtagaacac ttcgccgcgg cgttttttca tcatttccgc cagcttcgcc
     3481 cgtaacgtgc ggttagcact cacgccgccc gccatgacca gtcgcttaaa gcccgtctga
     3541 tccaacgctc gcttacactt aatcatcaac gtatcgacca ccgcatcttc aaaggcgcgg
     3601 gcgatatcag cacgcgtctg gtcgtcggtg ccgttgtcac gaatcgtgtt cgccgcaaag
     3661 gttttcagac cagaaaagct gaaatccagc cccggacggt cggtcatcgg acgcgggaaa
     3721 acaaagcgcc cggcagtacc ctgagccgcc attttcgaca gtaacggtcc gccaggataa
     3781 tccagcccca gcagcttcgc ggttttatca aacgcttcac cggcggcatc atcgatagac
     3841 tcgccgagca gctcgtactg accaatgcca gtcacgctga ttaactgcgt atgaccgccg
     3901 gacaccagca gcgcgacaaa cggaaattcc ggcgggttat cttccagcat cggcgctaac
     3961 agatgccctt ccatatggtg taccgggatt gccggaacgt tccaggcaaa cgccagagaa
     4021 cgccccacgg ttgcgccaac cagcagtgcg ccgactaatc cagggcctgc ggtataggcc
     4081 acagcatcaa tgtcttttgc cgttaagcca gactccttta gcgccgcctg gatcaacggt
     4141 acggttttgc gcacgtgatc gcgggaggcc agttcaggca cgacgccgcc gtagtcagcg
     4201 tgcaatttca cctgactata caattggttg gctaacaaac ctttttcatc gtcgtaaatg
     4261 gcgatgccgg tttcatcgca ggaagtttca atacccagta cacgcatgac ttgttttacc
     4321 tcgctttatt accgcgcagt gtaggaccaa tgcgggttga tgtaaaactt tgttcgcccc
     4381 tggagaaagc ctcgtgtata ctcctcaccc ttataaaagt ccctttcaaa aaggccgcgg
     4441 tgctttacaa agcagcagca attgcagtaa aattccgcac cattttgaaa taagctggcg
     4501 ttgatgccag cggcaaaccg aattaatcaa aggtgagagg cacatgccgg taattaaagt
     4561 acgtgaaaac gagccgttcg acgtagctct gcgtcgcttc aagcgttcct gcgaaaaagc
     4621 aggtgttctg gcggaagttc gtcgtcgtga gttctatgaa aaaccgacta ccgaacgtaa
     4681 gcgcgctaaa gcttctgcag tgaaacgtca cgcgaagaaa ctggctcgcg aaaacgcacg
     4741 ccgcactcgt ctgtactaat tccccgagag cgttgctctc cgatcagacc gagttgtagt
     4801 tgtaaggccg tgcttccgaa aggaatgcgc ggcttatttt cgtttatgaa ttgctaaaaa
     4861 tcggggccta tggctggacg aatcccacgc gtattcatta atgatctgct ggcacgcact
     4921 gacatcgtcg atctgatcga tacccgtgtg aagctgaaaa agcagggcaa gaatttccac
     4981 gcgtgttgtc cattccacaa cgagaaaacc ccgtcattca ccgttaacgg tgagaaacag
     5041 ttttaccact gctttggatg tggcgcgcac ggcaacgcga tcgacttcct gatgaactac
     5101 gacaagcttg agttcgtcga aacggtcgaa gagctggcag caatgcacaa tcttgaagtg
     5161 ccatttgaag caggcagcgg ccccagccag atcgagcgcc atcagaggca aacgctttat
     5221 cagttgatgg acggtctgaa tacgttttac caacaatctt tacaacaacc tgttgccacg
     5281 tctgcgcgcc agtatctgga aaaacgcgga ttaagccacg aggttatcgc tcgctttgcg
     5341 attggttttg cgccccccgg ctgggacaac gtcctgaagc ggtttggcgg caatccagaa
     5401 aatcgccagt cattgattga tgcggggatg ttggtcacta acgatcaggg acgcagttac
     5461 gatcgtttcc gcgagcgggt gatgttcccc attcgcgata aacgcggtcg ggtgattggt
     5521 tttggcgggc gcgtgctggg cgacgatacc cccaaatacc tgaactcgcc ggaaacagac
     5581 attttccata aaggccgcca gctttacggt ctttatgaag cgcagcagga taacgctgaa
     5641 cccaatcgtc tgcttgtggt cgaaggctat atggacgtgg tggcgctggc gcaatacggc
     5701 attaattacg ccgttgcgtc gttaggtacg tcaaccaccg ccgatcacat acaactgttg
     5761 ttccgcgcga ccaacaatgt catttgctgt tatgacggcg accgtgcagg ccgtgatgcc
     5821 gcatggcgag cgctggaaac ggcgctgcct tacatgacag acggccgtca gctacgcttt
     5881 atgtttttgc cggatggcga agaccctgac acgctggtac gaaaagaagg taaagaagcg
     5941 tttgaagcgc ggatggagca ggcgatgcca ctctccgcat ttctgtttaa cagcctgatg
     6001 ccgcaagttg atctgagtac ccctgacggg cgcgcacgtt tgagtacgct ggcactgcca
     6061 ttgatatcgc aagtgccggg cgaaacgctg cgaatatatc ttcgtcagga attaggcaac
     6121 aaattaggca tacttgatga cagccagctt gaacgattaa tgccaaaagc ggcagagagc
     6181 ggcgtttctc gccctgttcc gcagctaaaa cgcacgacca tgcgtatact tatagggttg
     6241 ctggtgcaaa atccagaatt agcgacgttg gtcccgccgc ttgagaatct ggatgaaaat
     6301 aagctccctg gacttggctt attcagagaa ctggtcaaca cttgtctctc ccagccaggt
     6361 ctgaccaccg ggcaactttt agagcactat cgtggtacaa ataatgctgc cacccttgaa
     6421 aaactgtcga tgtgggacga tatagcagat aagaatattg ctgagcaaac cttcaccgac
     6481 tcactcaacc atatgtttga ttcgctgctt gaactgcgcc aggaagagtt aatcgctcgt
     6541 gagcgcacgc atggtttaag caacgaagaa cgcctggagc tctggacatt aaaccaggag
     6601 ctggcgaaaa agtgatttaa cggcttaagt gccgaagagc gatcgggaag cccccgacag
     6661 ccgcactgag aggcagcggc aaatatataa gtacgccctc gtaattatcg ttggcggtaa
     6721 acaaccgttg gatttcagcg ttaacggctg aaggacatcg ggtcaatcgc ccaacaccaa
     6781 cctcatgaaa taagtgtgga taccgtctta tggagcaaaa cccgcagtca cagctgaaac
     6841 ttcttgtcac ccgtggtaag gagcaaggct atctgaccta tgccgaggtc aatgaccatc
     6901 tgccggaaga tatcgtcgat tcagatcaga tcgaagacat catccaaatg atcaacgaca
     6961 tgggcattca ggtgatggaa gaagcaccgg atgccgatga tctgatgctg gctgaaaaca
     7021 ccgcggacga agatgctgcc gaagccgccg cgcaggtgct ttccagcgtg gaatctgaaa
     7081 tcgggcgcac gactgacccg gtacgcatgt acatgcgtga aatgggcacc gttgaactgt
     7141 tgacccgcga aggcgaaatt gacatcgcta agcgtattga agacgggatc aaccaggttc
     7201 aatgctccgt tgctgaatat ccggaagcga tcacctatct gctggaacag tacgatcgtg
     7261 ttgaagcaga agaagcgcgt ctgtccgatc tgatcaccgg ctttgttgac ccgaacgcag
     7321 aagaagatct ggcacctacc gccactcacg tcggttctga gctttcccag gaagatctgg
     7381 acgatgacga agatgaagac gaagaagatg gcgatgacga cagcaccgat gatgacaaca
     7441 gcatcgaccc ggaactggct cgcgaaaaat ttgcggaact acgcgctcag tacgttgtaa
     7501 cgcgtgacac catcaaagcg aaaggtcgca gtcacgctgc cgctcaggaa gagatcctga
     7561 aactgtctga agtattcaaa cagttccgcc tggtgccgaa gcagtttgac tacctggtca
     7621 acagcatgcg cgtcatgatg gaccgcgttc gtacgcaaga acgtctgatc atgaagctct
     7681 gcgttgagca gtgcaaaatg ccgaagaaaa acttcattac cctgtttacc ggcaacgaaa
     7741 ccagcgatac ctggttcaac gcggcaattg cgatgaacaa gccgtggtcg gaaaaactgc
     7801 acgatgtctc tgaagaagtg catcgcgccc tgcagaaact gcagcagatt gaagaagaaa
     7861 ccggcctgac catcgagcag gttaaagata tcaaccgtcg tatgtccatc ggtgaagcga
     7921 aagcccgccg tgcgaagaaa gagatggttg aagcgaactt acgtctggtt atttctatcg
     7981 ccaagaaata caccaaccgt ggcttgcagt tccttgacct gattcaggaa ggcaacatcg
     8041 gtctgatgaa agcggttgat aaattcgaat accgccgtgg ttacaagttc tccacctacg
     8101 caacctggtg gatccgtcag gcgatcaccc gttctatcgc ggatcaggcg cgcaccatcc
     8161 gtattccggt gcatatgatt gagactatca acaaactcaa ccgtatttct cgccagatgc
     8221 tgcaagagat gggccgtgaa ccgacgccgg aagaactggc tgaacgtatg ctgatgccgg
     8281 aagacaagat ccgcaaagtg ctgaagatcg ccaaagagcc aatctccatg gaaacgccga
     8341 tcggtgatga tgaagattcg catctggggg atttcatcga ggataccacc ctcgagctgc
     8401 cgctggattc tgcgaccacc gaaagcctgc gtgcggcaac gcacgacgtg ctggctggcc
     8461 tgaccgcgcg tgaagcgaaa gttctgcgta tgcgtttcgg tatcgatatg aacaccgacc
     8521 acacgctgga agaagtgggt aaacagttcg acgttacccg cgaacgtatc cgtcagatcg
     8581 aagcgaaggc gctgcgcaaa ctgcgtcacc cgagccgttc tgaagtgttg cgtagcttcc
     8641 tggacgatta atcggtaggc cggatcaggc gttacgccgc acccggcact agtccctctg
     8701 cacaaacgcc accttttcgg tgtaatgcc
//
LOCUS       DADMHM010000167         8726 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.170, whole genome shotgun sequence.
ACCESSION   DADMHM010000167 DADMHM010000000
VERSION     DADMHM010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8726)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8726)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8726
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.170"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            53..1005
                     /locus_tag="JN125_003273"
                     /pseudo
     CDS             53..1005
                     /locus_tag="JN125_003273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415162.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional regulator"
     gene            1214..2179
                     /gene="lipA"
                     /locus_tag="JN125_003274"
     CDS             1214..2179
                     /gene="lipA"
                     /locus_tag="JN125_003274"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HAY8872937.1"
                     /translation="MSKPIVMERGVKYRDADKMALIPVKNVAIEREALLRKPEWMKIK
                     LPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCD
                     VAHGRPVAPDANEPVKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKS
                     PQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRPGADYNWSLKLL
                     ERFKEAHPEIPTKSGLMVGLGETNEEIIEVMRDLRRHGVTMLTLGQYLQPSRHHLPVQ
                     RYVSPDEFDEMKAEALAMGFTHAACGPFVRSSYHADLQAKGMEVK"
     gene            complement(2280..2483)
                     /gene="tatE"
                     /locus_tag="JN125_003275"
     CDS             complement(2280..2483)
                     /gene="tatE"
                     /locus_tag="JN125_003275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatE"
                     /protein_id="HAY8872938.1"
                     /translation="MGEISITKLLVVAALVVLLFGTKKLRTLGGDLGAAIKGFKKAMN
                     DDDAAAKKGADVDLQAEKLSHKE"
     gene            complement(2612..3400)
                     /locus_tag="JN125_003276"
     CDS             complement(2612..3400)
                     /locus_tag="JN125_003276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deaminated glutathione amidase"
                     /protein_id="HAY8872939.1"
                     /translation="MLVAAGQFAVTSVWEKNAEICASLMAQAAENDVSLFVLPEALLA
                     RDDHDADLSVKSAQLLEGEFLGRLRRESKRNMMTTILTIHVPSTPGRAWNMLVALQAG
                     NIVARYAKLYLYDAFAIQESRRVDAGNEIAPLLEVEGMKVGLMTCYDLRFPELALAQA
                     LQGAEILVLPAAWVRGPLKEHHWSTLLAARALDTTCYMVAAGECGNKNIGQSRIIDPF
                     GVTIAAASEMPALIMAEVTPERVRQVRAQLPVLNNRRFAPPQLL"
     gene            3493..3876
                     /gene="crcB"
                     /locus_tag="JN125_003277"
     CDS             3493..3876
                     /gene="crcB"
                     /locus_tag="JN125_003277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HAY8872940.1"
                     /translation="MLQLLLAVFIGGGTGSVARWLLSMRFNPLHQAIPLGTLTANLIG
                     AFIIGMGFAWFSRMTNIDPVWKVLITTGFCGGLTTFSTFSAEVVFLLQEGRFGWALLN
                     VFVNLLGAFAMTALAFWLFSASTAH"
     gene            complement(3931..4140)
                     /gene="cspE"
                     /locus_tag="JN125_003278"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
     CDS             complement(3931..4140)
                     /gene="cspE"
                     /locus_tag="JN125_003278"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002436076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator/RNA stability
                     regulator CspE"
                     /protein_id="HAY8872941.1"
                     /translation="MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTL
                     AEGQRVEFEITNGAKGPSAANVIAL"
     gene            complement(4315..4875)
                     /locus_tag="JN125_003279"
                     /pseudo
     CDS             complement(4315..4875)
                     /locus_tag="JN125_003279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415155.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid:lipid A palmitoyltransferase"
     gene            5465..6850
                     /gene="dcuC"
                     /locus_tag="JN125_003280"
     CDS             5465..6850
                     /gene="dcuC"
                     /locus_tag="JN125_003280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter DcuC"
                     /protein_id="HAY8872942.1"
                     /translation="MLTFIELLIGVVVIVGVARYIIKGYSATGVLFVGGLLLLIISAI
                     MGHKVLPSSQASTGYSATDIVEYVKILLMSRGGDLGMMIMMLCGFAAYMTHIGANDMV
                     VKLASKPLQYINSPYLLMIAAYFVACLMSLAVSSATGLGVLLMATLFPVMVNVGISRG
                     AAAAICASPAAIILAPTSGDVVLAAQASEMSLIDFAFKTTLPISIAAIIGMAIAHFFW
                     QRYLDKKEHISHEMLDVSEITTTAPAFYAILPFTPIIGVLIFDGKWGPQLHIITILVI
                     CMLIASILEFLRSFNTQKVFSGLEVAYRGMADAFANVVMLLVAAGVFAQGLSTIGFIQ
                     SLISIATSFGSASIILMLVLAILTMLAAVTTGSGNAPFYAFVEMIPKLAHSSGINPAY
                     LTIPMLQASNLGRTLSPVSGVVVAVAGMAKISPFEVVKRTSVPVLVGLVIVIVATELM
                     VPGTAAAVTGK"
     gene            complement(6891..7571)
                     /gene="dpiA"
                     /locus_tag="JN125_003281"
                     /gene_synonym="citB"
     CDS             complement(6891..7571)
                     /gene="dpiA"
                     /locus_tag="JN125_003281"
                     /gene_synonym="citB"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component response regulator DpiA"
                     /protein_id="HAY8872943.1"
                     /translation="MTAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARM
                     MIERFKPGLILLDNYLPDGRGINLLHELVQAHYPGDVVFTTAASDMETVSEAVRCGVF
                     DYLIKPIAYERLGQTLTRFRQRKHMLESIDSASQKQIDEMFNAYARGEPKDELPTGID
                     PLTLNAVRKLFKEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVHGKVGR
                     PQRIYHSG"
     gene            complement(7540..>8726)
                     /gene="dpiB"
                     /locus_tag="JN125_003282"
     CDS             complement(7540..>8726)
                     /gene="dpiB"
                     /locus_tag="JN125_003282"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sensor histidine kinase DpiB"
                     /protein_id="HAY8872944.1"
                     /translation="VIGVVSIGYLVSKIDSWRAEFLLPMAGVFVVLLGILMLLSWFLA
                     AHIRRQMMGMEPKQIARVVRQQEALFSSVYEGLIAVDPHGYITAINRNARKMLGLSSP
                     GRQWLGKPIAEVVRPADFFTEQIDEKRQDVVANFNGLSVIANREAIRSGDDLLGAIIS
                     FRSKDEISTLNAQLTQIKQYVESLRTLRHEHLNWMSTLNGLLQMKEYDRVLAMVQGES
                     QAQQQLIDSLREAFADRQVAGLLFGKVQRARELGLKMIIVPGSQLSQLPPGLDSTEFA
                     AIVGNLLDNAFEASLRSDEGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQG
                     VSTRADEPGEHGIGLYLIASYVTRCGGVITLEDNDPCGTLFSIYIPKVKPNDSSINPI
                     DR"
BASE COUNT         2235 a         2190 c         1967 g         2334 t
ORIGIN      
        1 tattgtaatt ttttaaatat tatttttcca tgaataaaat tggagtaagt gcgtggatag
       61 taataatcaa attgaaccct gtttaagcag aaagtcgtca gaaggtaaac cacaaatatt
      121 tacaacctta cgaaatattg ctcttaacct tctgactatt tttgaagctg tatatgtaca
      181 taaagggatc gttaatgcag cgaaagtgct taatctgccc ccctcggcaa tcagtcagtc
      241 tattcagaaa ctgcgcgtta tattccctga cccattgttt attcgcaaag gccagggtgt
      301 cactcctacc gcatttgcga tgcatctaca tgagtatatc agtcagggcc ttgagtccat
      361 tcttggccgc tggatatcga aggaagctat gataagcaac gaacgataac tattgcgacc
      421 actccctcgg tcggagccct ggtccttcct gtcatctatc gggcgattaa aactcactat
      481 ccgcagcttt tactgcgcaa cccgcccatc agcgacgcgg aaaaccaact cagtcagttt
      541 caaaccgatc tcatcatcga taacatgttt tgcaccaatc gtacggtgca acatcatgtt
      601 ctgttcaccg acaatatggt gttaatttgc cgcgagggaa atccactact ctctttagaa
      661 gatgacagag agactatcga caacgctgcg catgtacttc tgttaccgga agagcaaaat
      721 ttcagcggtc tgcggcagag agttcaagaa atgtttccgg accggcaaat caatttcacc
      781 agctacaaca ttttgacaat cgctgcactg gttgccaaca gtgacatgtt agcgattatt
      841 cccagccgtt tttataacct gtttagccgc tgctggccgc tggaaaaact gccttttccg
      901 tccttaaata aggagcaaat agatttctct atccactaca acaaattcag cctgcgtgat
      961 cccatcctgc acggagtaat agatgttatc cgtaatgcat tttgaaaaag tattgttaca
     1021 gccagatcac agcgcagaac gataaaatgg cacaatccaa caacaatttt acattttcgc
     1081 gaccgctttg gctgctttca ggtccgtttc aatgatatac tgccagtcgt taattcaaaa
     1141 atagttgata attacaacaa tctattgaat tgaaacgctt tccttcgtaa ttcgcaactg
     1201 gaacacgcac gctatgagta aacccattgt gatggaacgc ggtgttaaat accgcgatgc
     1261 cgataagatg gcccttatcc cggttaaaaa cgtggcaata gagcgcgaag ccctgctgcg
     1321 caagccggaa tggatgaaaa tcaagcttcc agcggactct acacgtatcc agggcatcaa
     1381 agccgcaatg cgcaaaaatg gcctgcattc tgtctgcgag gaagcctcct gccctaacct
     1441 ggcggaatgc ttcaaccacg gcacagcaac gtttatgatc ctcggcgcta tttgtacccg
     1501 ccgttgtccg ttctgtgatg ttgcccacgg tcgcccggta gctcctgatg ccaatgaacc
     1561 agtgaaactg gcgcagacca ttgccgatat ggcgctgcgt tatgtggtta tcacctccgt
     1621 tgaccgtgat gacctgcgcg atggcggtgc ccagcacttt gcggattgca ttactgccat
     1681 tcgggaaaaa agcccgcaaa tcaaaattga aactctggtg ccggatttcc gtggtcgtat
     1741 ggatcgtgct ctggatattc tgactgcaac gccaccagat gtgttcaacc ataacctgga
     1801 aaacgtaccg cgtatttacc gtcaggtacg gcctggtgca gattacaact ggtcgctgaa
     1861 gctgctggaa cgctttaaag aagcgcatcc ggaaatcccg accaagtctg gtctgatggt
     1921 gggactgggt gaaaccaatg aagaaattat tgaggtaatg cgcgacctgc gccgtcatgg
     1981 tgtgacgatg ttaacgctgg ggcaatattt gcagccaagc cgccatcacc tgccggttca
     2041 acgttacgtt agcccggatg agttcgacga aatgaaagcc gaagcgctgg cgatgggctt
     2101 tacccatgct gcatgcggtc cgtttgtccg ctcttcttac cacgccgatt tgcaggcgaa
     2161 agggatggaa gttaagtaat cctgtaataa ttacttacat ctgtctgata aaaaacccac
     2221 tttttgaagc gggttttttg tatcgaacaa gatattgagg gagcgtcctg ctcgccacgt
     2281 cactctttat gagagagctt ttcagcctga agatcaacgt ctgcgccttt tttcgccgca
     2341 gcatcatcat cattcatcgc cttcttgaac cctttaatgg ccgctccaag gtctccaccc
     2401 agcgtacgta acttcttagt cccaaacagc agaacgacca gcgccgcaac tactagcagt
     2461 ttggtaatac taatctcacc catagatacc ttcttgacat ataaccggca acagaacgcg
     2521 ccttaaaaac cagagaatat taacggtcat tcgacgcgcg cacacaatag caatctgtaa
     2581 caaggtgaat caagcgccga gtaaaaaaac atcataataa ttgcggcggc gcaaagcgac
     2641 ggttgtttaa gacgggcagt tgcgcgcgca cctgacgcac acgttcgggc gtcacttccg
     2701 ccataatgag tgcaggcatt tctgacgctg ccgcaatggt gacgccaaag ggatctataa
     2761 tccggctttg cccgatattt ttgttcccgc actcgcccgc cgccaccata taacaggtgg
     2821 tatccagcgc acgagcggca agcaacgttg accagtgatg ctctttgagc ggcccgcgaa
     2881 cccaggcggc aggaagtacc aggatttcag ctccctgtaa tgcctgtgcc agcgccagct
     2941 ctggaaagcg taagtcataa caggtcatca gaccgacctt catcccttcc acctccagta
     3001 acggagcgat ttcattacca gcatcaacac ggcgtgattc ctgaatggca aatgcatcat
     3061 agagatacag tttggcataa cgggcgacga tgtttcctgc ctgaagtgcc accagcatat
     3121 tccatgcgcg ccccggcgtt gaaggaacat gaatcgtcag aattgtcgtc atcatgttac
     3181 gtttactttc tcgccgtaaa cgtccgagga attcgccttc cagcagctgt gctgatttaa
     3241 ccgatagatc tgcatcatga tcatcgcgtg ccagcaatgc ttccggcagg acaaacagcg
     3301 atacgtcgtt ttccgccgcc tgcgccatca acgaggcaca aatctcagcg ttcttttccc
     3361 acacagatgt aacagcaaac tgtcctgcag caaccagcat tgtcacctcc tgtcagagtc
     3421 gtaaaattcg ccaacgacga ttattcggcg ttacacttat cactcataca aatcaaatag
     3481 caggattttg cagtgttaca acttctttta gcagttttta ttggcggtgg tacgggaagc
     3541 gtggcgagat ggctgttaag tatgcgattt aacccactgc atcaggcgat tccgttgggg
     3601 acgctgacag caaacctgat tggggcattc atcataggaa tgggattcgc atggttcagc
     3661 aggatgacga acattgatcc agtgtggaaa gtattaatca ccaccggatt ttgtggcggt
     3721 ctaacaacct tctcaacatt ttcggcagaa gtggtgtttt tgttacaaga gggtcgcttt
     3781 ggctgggcat tactgaacgt tttcgtcaac cttctggggg cttttgccat gacagcactg
     3841 gctttctggc tgttttcggc ctcaaccgca cactaaagac caaaaaaaaa accgctgatt
     3901 aagcgggttt tgaattcttg ctgacgtatc ttacagagcg attacgtttg cagcagaagg
     3961 gcctttggca ccgttagtga tttcgaactc tacgcgctga ccttcagcaa gagttttaaa
     4021 accattagtc tggattgcag agaagtgtac gaacacgtct ttgctgccgt cttccggagt
     4081 aatgaaaccg aatcctttgg actcattaaa ccacttaacg ttacctttaa tcttagacat
     4141 caaaattacc tttacatgaa aaatagacac aaatgctgtg tcggttacca gtacaccaat
     4201 tgtggtacgc tttgtccagt gcaactttac taaaaagtga taaaagtcgc gttatttttg
     4261 atgttactta ttttagctat tgattttaaa gaagttacta aaacttcatt tgtctcaaaa
     4321 ctgaaagcgc atccaggcaa agtacacatt gccattgttg taggtacccg gaatgtaggt
     4381 catctgaaaa gtcactgggc cataacccac ggaggccaat ggcagtagaa ccgggagagg
     4441 gatgtaattc cagttatcgc gtgccgttac gccagcggtg aatcccagac ctaaatgaaa
     4501 attttcatcc gccagcggtc gccaggtact ttcccatccg tatccggcaa tcggttccca
     4561 tttgttccac gagtccttaa atgccatggc atacaggcca tgccagtttc ctttttcatc
     4621 ccaacgcgac aggccaaaac cgccacccca cggtcgctcg ttatagcgat cggttttttc
     4681 tttgtcgtaa gcgaaacgtg catgctaggt gatggcagga atatataaat cataatgttc
     4741 aggctgttgc caggttggtg caatattttc tctaaacgtt gtcatccact catctgcgtt
     4801 agcaaaaact ttaccaacgc tgattaactg aataaaaaca aaggaaaaga tagcgacata
     4861 tttactcacg ttcatttgtg accataaaac atttatcaaa aatctactac tagcatagca
     4921 aagctacaat taacataacc ttaatagacc caacataaag aataatctga atagctgctc
     4981 tatttatttc cgcttgttca agttaaatat ttccgcgcat cgattaaaga tgatgcgtcg
     5041 ttttctgcga tgggaatagt caaaaaagaa aaaccaagtc ttttttgatg ataaaatgaa
     5101 atcaaggaaa aattatttta ttttttaacg agatacaaca atcatcttaa cgaagtatat
     5161 aatatatatc gtcaacccat gctcatatta gattattttt ttgagcacac agccgcagct
     5221 aacaccattg caattaacaa atttgcatca atccaccatc aattatcaca cattattatg
     5281 tgataattgc caaccgctaa atatgcgttt tgttatctat gtataaaaac agcaacttca
     5341 atgtcttaat ggcagttttt cttgatttta atcagcattc atcgccaatt tattgggcat
     5401 attttttcct taagctttag gaatttttta ttatttactt tggggcctgg agacaggaaa
     5461 aattatgctg acattcattg aactccttat tggggttgtg gttattgtgg gtgtagctcg
     5521 ctacatcatt aaagggtatt ccgccactgg tgtgttattt gtcggtggcc tgttattgct
     5581 gattatcagt gccattatgg ggcacaaagt gttaccgtcc agccaggctt caacaggcta
     5641 cagcgccacg gatatcgttg aatacgttaa aatattacta atgagccgcg gcggcgacct
     5701 cggcatgatg attatgatgc tgtgtggatt tgccgcttac atgacccata tcggcgcgaa
     5761 tgatatggtg gtcaagctgg cgtcaaaacc attgcagtat attaactccc cttacctgct
     5821 gatgattgcc gcctattttg tcgcctgtct gatgtctcta gccgtctctt ccgcaaccgg
     5881 tctgggtgtt ttgctgatgg caaccctatt tccggtgatg gtaaacgttg gtatcagtcg
     5941 tggcgcagct gctgccattt gtgcctcccc ggcggcgatt attctcgcac cgacttcagg
     6001 ggatgtggtg ctggcggcgc aagcttccga aatgtcgctg attgacttcg ccttcaaaac
     6061 gacgctgcct atctcaattg ctgcaattat cggcatggcg atcgcccact tcttctggca
     6121 acgttatctg gataaaaaag agcacatctc tcatgaaatg ttagatgtca gtgaaatcac
     6181 caccactgct cctgcgtttt atgccatttt gccgttcacg ccgatcatcg gtgtactgat
     6241 ttttgacggt aaatggggtc cgcaattaca catcatcact attctggtga tttgtatgct
     6301 gattgcctcc attctggagt tcctccgcag ctttaatacc cagaaagttt tctctggtct
     6361 ggaagtggct tatcgcggga tggcagatgc gtttgctaac gtggtgatgc tgctggttgc
     6421 cgctggggta ttcgctcagg ggcttagcac catcggcttt attcaaagtc tgatttctat
     6481 cgctacctcg tttggttcgg cgagtatcat cctgatgctg gtattggcga ttctgacaat
     6541 gctggcggca gtcacgaccg gttcaggcaa tgcgccgttt tatgcgtttg ttgagatgat
     6601 cccgaaactg gcgcactctt ccggcattaa cccggcgtat ttgactatcc cgatgctgca
     6661 ggcgtcaaac cttggccgta ccctttcgcc cgtttctggc gtagtcgttg cggttgccgg
     6721 gatggcgaag atctcgccgt ttgaagtcgt aaaacgcacc tcggtaccgg tgcttgttgg
     6781 tttggtgatt gttatcgttg ctacagagct gatggtgcca ggaacggcag cagcggtcac
     6841 aggcaagtaa atagtaatgc cggaggcaag tttcctccgg ctttatcatg tcacccactg
     6901 tggtatatgc gttgtggtct gccaactttg ccgtgaacaa tttcagcaat aatcagatgg
     6961 cggctggcgc aatattcaag ataacgtctg gcagtggtgc ggctgatggt cagtgcctgc
     7021 gccaccgttt ctgccgtatg ttgcacacca ggctctttaa acagttttcg caccgcgttt
     7081 agcgtcaagg gatcaatgcc ggtcggcagt tcgtctttag gttcaccgcg agcataggca
     7141 ttaaacatct catcaatttg cttctggctg gcgctatcaa tactttccag catatgttta
     7201 cgctggcgga aacgggttag cgtttgcccc agccgttcat aggcaatggg cttaatgaga
     7261 taatcaaata caccacaacg tacggcttca gacaccgttt ccatatcgct ggctgcagtg
     7321 gtaaacacca cgtcgccggg ataatgcgcc tgcaccagtt catgcaataa attaatccct
     7381 ctgccgtcag gaagatagtt atcgagcaag attagccccg gcttaaaacg ctcgatcatc
     7441 attcgggcct gcgccaggtt tcccgccagt aatatctgac tgaatccggg aatgtgacga
     7501 atatattccg catgcatctc tgccagcggc gtttcgtcct caacgatcaa tagggttaat
     7561 ggagctgtca ttaggtttca ctttcggaat atagattgaa aataaggtac cgcagggatc
     7621 attatcttcg agagtgataa caccaccgca gcgcgttacg tagctggcaa tcaagtacaa
     7681 cccaatgcca tgttcaccgg gctcgtcagc acgcgtactg accccctgct caaatatttt
     7741 gtctcgtaga gactctggaa cgccgcagcc ctgatcggcg acttcaatca ccacatcatc
     7801 gccttcatcg ctgaggaata attcaacgat cttgtttcct tcatcgctac gcaggctggc
     7861 ttcgaaggcg ttatcaagta aattgcccac aatggctgca aactcggtgc tatccagtcc
     7921 tggcggcagt tgcgaaagct ggctaccggg gacaatgatc atttttagcc ccagttcccg
     7981 ggcgcgctgc actttaccaa aaagcagccc cgccacctgg cgatcggcaa acgcctcgcg
     8041 caggctgtca ataagctgtt gctgggcctg agactccccc tgcaccatcg ccagcacgcg
     8101 atcatactct ttcatctgca acagaccatt gagcgtcgac atccaattga gatgctcgtg
     8161 tcgcaatgta cgaaggctct caacgtattg ttttatttgc gtcagttgcg cattgagggt
     8221 ggaaatttcg tctttactgc gaaagctgat aatggccccc agcaaatcat cacctgaacg
     8281 aatagcttcc cgattggcaa taacgctcag accgttaaag ttagccacca catcctgacg
     8341 tttttcatca atctgttcgg taaagaaatc ggcgggcctg accacttcag caatgggttt
     8401 acccaaccat tgccgtccgg gggaactcag ccccagcatc tttcttgcgt tacgattgat
     8461 ggcggtaatg taaccgtgcg gatccaccgc aatcagccct tcataaaccg aactaaacag
     8521 cgcctcttgc tgacggacca cgcgtgcgat ttgctttggc tccatgccca tcatctgccg
     8581 acggatatgc gcggccagga accacgacag caacatcaga atccctaaca gcacgacaaa
     8641 cacacctgcc atcggtaata aaaactcagc ccgccagcta tcgattttac tcaccaggta
     8701 gccaatcgac accacgccga tgactt
//
LOCUS       DADMHM010000168         8634 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.171, whole genome shotgun sequence.
ACCESSION   DADMHM010000168 DADMHM010000000
VERSION     DADMHM010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8634)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8634)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8634
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.171"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(208..414)
                     /locus_tag="JN125_003283"
     CDS             complement(208..414)
                     /locus_tag="JN125_003283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbfA family protein"
                     /protein_id="HAY8872945.1"
                     /translation="MELYREYPAWLIFLRRTYAVAAGVLALPFMLFWKDRARFYSYLH
                     RVWSKTSDKPVWMEQAEKATGDFY"
     gene            727..816
                     /gene="kdpF"
                     /locus_tag="JN125_003284"
     CDS             727..816
                     /gene="kdpF"
                     /locus_tag="JN125_003284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
                     /protein_id="HAY8872946.1"
                     /translation="MSAGVIAGVLLVFLLLGYLVYALINAEAF"
     gene            816..2489
                     /gene="kdpA"
                     /locus_tag="JN125_003285"
     CDS             816..2489
                     /gene="kdpA"
                     /locus_tag="JN125_003285"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706533.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HAY8872947.1"
                     /translation="MAAQGFLLIATFLLVLMVLARPLGSGLARLINDIPLPSTAGVER
                     ILFRLPGVSDHEMNWKQYLCAILGLNMLGLAVLFFMLLGQHYLPLNPQQLPGLSWDLA
                     LNTAVNFVTNTNWQSYSGETTLSYFSQMAGLTVQNFLSAASGIAVIFAFIRAFTRQSM
                     STLGNAWVDLLRITLWVLVPVALLIALFLIQQGALQNFLPYQAVNTVEGAQQLLPMGP
                     VASQEAIKMLGTNGGGFFNANSSHPFENPTALTNFVQMLAIFLIPTALCFAFGEVTGD
                     RRQGRMLLWAMSVIFVICVGVVMWAEVQGNPHLLALGADSSINMEGKESRFGVLVSSL
                     FAVVTTAASCGAVIAMHDSFTALGGMVPMWLMQIGEVVFGGVGSGLYGMMLFVLLAVF
                     IAGLMIGRTPEYLGKKIDVREMKLTALAIQVTPTLVLMGAALAMMTDAGRSAMLNPGP
                     HGFSEVLYAVSSAANNNGSAFAGLSANSPFWNCLLAFCMFVGRFGVIIPVMAIAGSLV
                     SKKSQPASSGTLPTHGPLFVGLLIGTVLLVGALTFIPALALGPVAEYLS"
     gene            2512..4560
                     /gene="kdpB"
                     /locus_tag="JN125_003286"
     CDS             2512..4560
                     /gene="kdpB"
                     /locus_tag="JN125_003286"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HAY8872948.1"
                     /translation="MSRKQLALFEPTLVVQALKEAVKKLNPQAQWRNPVMFIVWIGSL
                     LTTCISIAMASGAMPGNALFSAAISGWLWVTVLFANFAEALAEGRSKAQANSLKGVKK
                     TAFARKLREPKYGAAADKVPADQLRKGDIVLVEAGDIIPCDGEVIEGGASVDESAITG
                     ESAPVIRESGGDFASVTGGTRILSDWLVIECSVNPGETFLDRMIAMVEGAQRRKTPNE
                     IALTILLIALTIVFLLATATLWPFSAWGGNAVSVTVLVALLVCLIPTTIGGLLSAIGV
                     AGMSRMLGANVIATSGRAVEAAGDVDVLLLDKTGTITLGNRQASEFIPAQGVDEKTLA
                     DAAQPASLADETPEGRSIVILAKQRFNLRERDVQSLHATFVPFTAQSRMSGINIDNRM
                     IRKGSVDAIRRHVEANGGHFPADVDQKVDQVARQGATPLVVVEGSRVLGVIALKDIVK
                     GGIKERFAQLRKMDIKTVMITGDNRLTAAAIAAEAGVDDFLAEATPEAKLALIRQYQA
                     ESRLVAMTGDGTNDAPALAQADVAVAMNSGTQAAKEAGNMVALDSNPTKLIEVVHIGK
                     QMLMTRGSLTTFSIANDVAKYFAIIPAAFAATYPQLNALNIMRLHSPDSAILSAVIFN
                     ALIIVFLIPLALKGVSYKPLTASAMLRRNLWIYGLGGLLVPFIGIKVIDLLLTVCGLV
                     "
     gene            4569..5112
                     /gene="kdpC"
                     /locus_tag="JN125_003287"
                     /pseudo
     CDS             4569..5112
                     /gene="kdpC"
                     /locus_tag="JN125_003287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308751.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit C"
     gene            5105..7789
                     /gene="kdbD"
                     /locus_tag="JN125_003288"
     CDS             5105..7789
                     /gene="kdbD"
                     /locus_tag="JN125_003288"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     KdbD"
                     /protein_id="HAY8872949.1"
                     /translation="MNNEPLRPDPDRLLEQTAAPHRGKLKVFFGACAGVGKTWAMLAE
                     AQRLRAQGLDIVVGVVETHGRKDTAAMLEGLAVLPPKRLAYRGRHICEFDLDAALARR
                     PALILMDELAHSNALGSRHPKRWQDIEELQEAGIDVFTTVNVQHLESLNDVVSGVTGI
                     QVRETVPDPFFDAADDVVLVDLPPDDLRQRLKEGKAYIAGQAERAIEHFFRKGNLIAL
                     RELALRRTADRVDEQMRAWRGHPGEEKVWHTRDAILLCIGHNTGSEKLVRAAARLASR
                     LGRVWHAVYVETPALHRLPEKKRRAILSALRLAQELGAETATLSDPAEEKAVVRYARE
                     HNLGKIILGRPASRRWWRRETFADRLARIAPDLDQVLVALDEPPARTINNAPDSRSFK
                     DKWRVQIQGCVVAAALCAVITLIAMQWLMAFDAANLVMLYLLGVVVVALFYGRWPSVV
                     ATVINVVSFDLFFIAPRGTLAVSDVQYLLTFAVMLTVGLVIGNLTAGVRYQARVARYR
                     EQRTRHLYEMSKALAVGRSPQDIAATIEQFIASTFHARSQVLLPDDNGKLQPLTHPQG
                     MTPWDDTIAQWSFDKGLPAGAGTDTLPGVPYQILPLKSGEKTYGLVVVEPGNLRQLMI
                     PEQQRLLETFTLLVANALERLTLTASEEQARMASEREQIRNALLAALSHDLRTPLTVL
                     FGQAEILTLDLASEGSPHARQASEIRQHVLNTTRLVNNLLDMARIQSGGFNLKKEWLT
                     LEEVVGSALQMLEPGLSSPINLSLPEPLTLIHVDGPLFERVLINLLENAVKYAGAQAE
                     IGIDAHVEGENLQLDVWDNGPGLPPGQEQTIFDKFARGNKESAVPGVGLGLAICRAIV
                     DVHGGTITAFNRPEGGACFRVTLPQQTAPELEEFHEDM"
     gene            7786..8463
                     /gene="kdpE"
                     /locus_tag="JN125_003289"
     CDS             7786..8463
                     /gene="kdpE"
                     /locus_tag="JN125_003289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator KdpE"
                     /protein_id="HAY8872950.1"
                     /translation="MTNVLIVEDEQAIRRFLRTALEGDGMRVYEAETLQRGLLEAATR
                     KPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLSKP
                     FGIGELQARLRVALRRHSATAAPDPLVKYSDVTVDLAARVIHRGEEEVHLTPIEFHLL
                     AVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPARPRHFITETS
                     IGYRFML"
BASE COUNT         1869 a         2224 c         2452 g         2089 t
ORIGIN      
        1 gctgacaggc aaaaccctac agatttataa gaaagcctta agtgagatat ccatcagata
       61 gaaacaatta ggaaaatatt tatatatttt tcctgaatat atttcagctg ggtaatacca
      121 tatctaaata tttacctgaa catcttccta ataaaaaaac cgccagcatc tccactagcg
      181 gttttcaatg tattcaaaac tcggcaatca gtaaaaatca ccggttgcct tttcggcctg
      241 ttccatccaa accggtttat cgctggtttt cgaccagacg cggtgcaggt agctgtaaaa
      301 gcgggcgcgg tctttccaga aaagcatgaa aggcagcgcc agaacgcccg ctgcaaccgc
      361 atatgtacgg cgtaaaaaga taagccatgc aggatattct ctgtagagtt ccatactttt
      421 ctcccccttt tgtatctacc cggtgaatag caccggaaaa atgaatttgt ttatctgatg
      481 aaaatagtac tgccttttgt gtaattttac tactcatccg accacttatt tttgcttatt
      541 gatggtttat ttacattcac tctgtaatta agttacacaa aagttaaatt aatgctaaac
      601 attagttaaa tcatggcttt tgccattttt atactttttt tacaccccgc ccgcagattt
      661 ttgcgaaatc tttgcagcca gaattctact cttccggtat cacttttagg ccactggagg
      721 tgcactgtga gtgcaggcgt gatagccggc gtgttgctgg tgtttttatt actgggttat
      781 ttggtttatg ccctgatcaa tgcggaggcg ttctgatggc tgcgcaaggg ttcttactga
      841 ttgccacgtt tttactggta ttaatggtgc tggcgcgtcc tttaggcagc gggctggcgc
      901 ggctgattaa tgacattcct cttccaagta cagcgggcgt tgaacgtata ctctttcgtt
      961 tacctggcgt ctctgaccat gagatgaact ggaagcaata tctttgtgcc attctcggcc
     1021 tgaacatgct ggggctggcg gtgctgtttt ttatgttgct cggtcagcac tatctgccgc
     1081 ttaatccaca gcagttgccg gggctgtcgt gggatctggc gctgaatacc gccgtcaact
     1141 ttgtcacgaa taccaactgg caatcttata gcggtgaaac cacgttgagc tatttcagcc
     1201 agatggcagg cttaacggta caaaactttc tttctgccgc cagcgggatt gcggtgattt
     1261 ttgccttcat ccgtgcgttt actcgccaga gcatgagcac actcgggaat gcctgggtcg
     1321 atctgctacg catcacgtta tgggtgctag tccctgtggc gttgttgatc gcactgtttc
     1381 ttattcaaca aggtgcgctg caaaactttc tgccctatca ggcagtgaat accgttgaag
     1441 gagcgcaaca gctgttaccc atgggaccag tagcttctca ggaagcgatc aagatgctcg
     1501 gtactaacgg cggtggcttc tttaatgcca actcgtcgca tccgtttgaa aacccaaccg
     1561 cactgaccaa cttcgtgcag atgctggcga tcttcttgat cccaacagct ctgtgctttg
     1621 cctttggtga agtgacgggc gatcgccgcc aggggcgcat gttgctgtgg gcgatgtcag
     1681 tgatttttgt catctgcgta ggcgtggtta tgtgggcaga agttcagggt aatcctcatc
     1741 tgctggcgct cggcgcagac agcagcatca atatggaagg taaagagagc cgtttcggcg
     1801 tgctggtcag tagcctgttt gcggtcgtga ctacggcggc gtcctgtggc gcggtgattg
     1861 cgatgcatga ttcgtttacc gctctcggcg gcatggtgcc gatgtggcta atgcaaattg
     1921 gtgaagtggt gttcggcggt gtcggttctg gtctttacgg catgatgctg tttgtcctgc
     1981 tggcggtgtt tattgccggg ctgatgattg gtcgtacacc ggaatatctg ggtaaaaaaa
     2041 tcgacgtacg cgagatgaaa ctgactgcac tggcgattca ggttactcca acactggtac
     2101 tgatgggcgc ggcgttggcg atgatgaccg acgccggacg tagcgccatg cttaaccctg
     2161 gcccgcatgg ttttagcgaa gtgctgtacg ccgtgtcgtc cgccgctaac aacaacggaa
     2221 gcgcctttgc cggattaagc gccaactctc cgttctggaa ctgtttactg gcgttctgca
     2281 tgtttgtcgg tcgcttcggg gtgattatcc cggtgatggc aattgccggt tcgctggtga
     2341 gtaaaaagag ccaacccgcc agctccggca cgctgccaac gcacggcccg ctgtttgttg
     2401 gcctgttaat cggcaccgtg ttgctggttg gcgcactgac ctttatccct gccctggcgc
     2461 ttggtccggt ggcggaatat ctctcctgat gatattgagt gagcactgaa tatgagtcgt
     2521 aaacaactgg cgctattcga accaacactt gtcgttcagg cgctgaaaga agcggtgaaa
     2581 aaattaaacc cgcaggcgca atggcgcaat ccggtgatgt ttatcgtctg gatcggcagt
     2641 ctgctgacca cctgtattag catcgcgatg gcaagcggtg cgatgcctgg caatgcgctg
     2701 tttagcgcgg caattagcgg ctggctgtgg gtcaccgtac tgttcgctaa tttcgccgag
     2761 gcgctggcag aaggccgcag taaagcgcag gccaacagtc ttaaaggggt gaaaaaaact
     2821 gcctttgccc gcaagctgcg tgagccgaaa tatggcgctg cggcggacaa agttcctgcc
     2881 gatcaactgc gtaaaggtga catcgtgctg gtagaagctg gcgatattat cccctgcgat
     2941 ggtgaagtca ttgaaggcgg cgcatcggtc gatgaaagcg ccatcaccgg ggaatcggca
     3001 ccggtgatcc gtgaatccgg cggcgatttt gcctccgtca ccggcggcac gcgtattctt
     3061 tctgactggc tggtgattga gtgtagcgtt aaccccggtg agacatttct ggatcggatg
     3121 atcgcgatgg tggaaggcgc acagcgacgc aaaacaccga acgagattgc cctgactatc
     3181 ctgctgattg ctctgaccat cgtcttttta ctggcaaccg ccacgctgtg gccgttttcc
     3241 gcgtggggcg gtaatgcagt gagtgtaacg gtactggtgg cgctgctggt ctgtctgatc
     3301 ccaaccacta ttggcggcct gttgtcagcg atcggcgtcg ccgggatgag tcggatgctg
     3361 ggcgcgaatg tgattgccac cagcggacgt gcagttgaag cggcaggtga cgttgacgtt
     3421 ctgctactgg ataaaaccgg caccatcaca ctcggtaacc gtcaggcgtc ggagtttatc
     3481 cctgcgcagg gcgtggatga aaaaacgctg gctgacgccg cacaaccggc ttcgctggct
     3541 gatgaaacgc cggaaggccg cagtattgtg atcctcgcca agcaacgttt taacctgcgc
     3601 gagcgcgatg tgcagtcgct ccatgccacc tttgtaccgt ttactgcgca aagccggatg
     3661 agcgggatca acatcgacaa ccgcatgatc cgtaaaggtt ctgtcgatgc cattcgccgc
     3721 catgttgagg ctaacggcgg tcacttccct gccgatgttg atcaaaaagt cgatcaggtt
     3781 gcgcgtcagg gggccacgcc gctggtggtg gtggaaggtt cccgtgtgct gggcgttatt
     3841 gcgctgaaag atatcgtcaa aggcggtatt aaagagcgct tcgcccagct gcgcaaaatg
     3901 gacattaaaa cggtgatgat taccggcgat aaccgtctga ctgccgccgc cattgctgcg
     3961 gaagcgggcg tcgatgattt tctcgccgaa gcgacaccgg aggccaagct ggcattgatt
     4021 cgtcagtatc aggcggaaag ccgtttggtg gcgatgaccg gcgacggcac caacgatgct
     4081 ccggcgctgg cgcaagcaga tgtcgcggtg gcgatgaact ccggcaccca ggcggcgaaa
     4141 gaggcgggca atatggtcgc tctcgactct aacccgacca agttgatcga ggtggtgcat
     4201 attggcaaac agatgctgat gacccgtggc tcgctgacca ccttcagcat tgccaacgat
     4261 gtggcgaaat acttcgccat tattccggcg gcgttcgcgg caacgtatcc gcagttaaat
     4321 gcgctgaaca tcatgcgcct gcattcgccc gactccgcca ttctcagtgc agtcattttc
     4381 aacgccttga ttatcgtctt tttgattcct ctggcgttaa aaggcgtgag ttataaaccg
     4441 cttaccgctt ctgccatgtt gcgccgtaac ttatggattt acggtctggg tgggctgctg
     4501 gtgccgttta ttggtatcaa agtcattgat ttactgctga ccgtttgcgg tctggtgtga
     4561 ggtttaccat gcgtggctta cgtccggcat tatcgacatt tatctttctg ttattgatta
     4621 ctggcggcgt ttacccgctg ctgaccaccg tgctggggca atggtggttt ccctggcagg
     4681 ccaacggttc gttgattcgt gaaggtgata cggtgcgggg ttcggcatta atcgggcaga
     4741 attttaccag caacggcaga aatgccctat aatccacagg cttctggcgg gagcaatctg
     4801 gcggtcagta accctgagct ggataaacaa atagccgcac gcgttgctgc attacgggcc
     4861 gctaacccgg atgccagtac gaacgttccg gttgaactgg tgacggcatc ggcaagcggg
     4921 ctggacaata atatcacccc gcaagcggcg gcctggcaga tcccacgcat cgcgaaagcg
     4981 cgtaatctca gcgttgaaca gctcacgcag ctgatcgcaa aatacagcca acaaccgctg
     5041 gtgaaatata tcggccagcc ggtcgtcaac attgtcgaac tcaatctggc gctggataag
     5101 cttgatgaat aacgaaccct tacgtcccga ccccgatcgt ctgctggaac aaactgccgc
     5161 gccgcatcgg gggaagctga aagttttctt cggtgcctgt gcaggcgtcg ggaagacctg
     5221 ggcgatgctg gcagaagccc agcgactgcg ggcgcaaggg ctggatattg tggttggcgt
     5281 ggtagaaacc cacgggcgaa aagataccgc cgcaatgctg gaagggctgg ctgttctgcc
     5341 gccaaaacgc ctggcgtacc gtgggcggca catctgcgag tttgacctcg atgccgccct
     5401 cgcccgccgt ccggcgctga tcttaatgga cgaactggcg cacagtaatg cgctaggttc
     5461 tcgtcaccct aaacgctggc aggacatcga agagctgcag gaagcaggca ttgatgtttt
     5521 cactaccgtc aacgttcagc atctggaaag tctgaatgat gtggtcagcg gcgtcaccgg
     5581 aattcaggta cgggaaaccg tgcccgatcc ttttttcgat gccgccgacg acgtggttct
     5641 ggtggacttg cccccggacg atctgcgcca gcggctgaaa gaaggcaaag cctatattgc
     5701 cgggcaggcg gagcgcgcca ttgaacattt tttccgcaaa ggcaatctga tcgccctgcg
     5761 cgaactggca ctgcgccgta ctgccgatcg cgttgatgag caaatgcgcg cctggcgggg
     5821 gcatcctggc gaagagaaag tctggcacac gcgcgacgcg atccttttat gcatcggcca
     5881 taacaccggt agtgagaagc tggtccgcgc ggcggcgcgg ctggcgtcac ggctgggtag
     5941 agtctggcac gcggtgtatg ttgaaacccc tgccctgcac cgcttaccgg aaaaaaaacg
     6001 tcgggcaatt ctcagcgcct tacgtctggc gcaggagctg ggcgcggaga cggcaacact
     6061 ttctgatcca gcggaagaaa aagcagtagt gcgttatgcc cgtgaacata atctcggcaa
     6121 gattattctc ggtcgcccgg cctcgcgccg ctggtggcgt cgggaaacgt ttgctgaccg
     6181 actggcgcgc atcgcccccg atctcgatca ggtgctggtc gcgcttgatg aaccacccgc
     6241 ccgcacgatt aacaacgcgc cggatagccg ctcttttaaa gacaagtggc gggtacagat
     6301 tcagggatgc gtggttgccg ccgcgttatg cgccgttatc actttaattg ccatgcagtg
     6361 gctgatggcg tttgatgccg ccaacctggt gatgctgtat ctgcttggcg tggtggtggt
     6421 ggcgctattt tatggacgct ggccttcggt ggttgctacc gtcattaatg tggtgagttt
     6481 cgatctcttt tttatcgccc cacgcggcac gctcgccgtc tctgatgtgc aatatctgct
     6541 gaccttcgca gtgatgttaa ccgtcgggct ggtgatcggg aaccttactg ctggcgtgcg
     6601 ttatcaggcg cgggtagccc gttaccgcga gcaacgcaca cggcacttat atgaaatgtc
     6661 gaaagctctg gcggtgggcc gcagtccgca ggacatcgcc gccaccatcg aacaatttat
     6721 tgcctccacg tttcatgccc gcagtcaggt gttgttgccc gatgacaacg gtaaattgca
     6781 gccgttaaca catccgcaag gaatgacgcc atgggacgat accatcgcgc agtggagttt
     6841 tgataaaggc ctgcctgcgg gcgcgggcac cgacacgtta cccggtgtac cgtaccagat
     6901 tttgccgcta aaaagcggcg agaaaaccta cgggctggtg gtggtggagc cggggaatct
     6961 gcgccagttg atgatcccgg aacagcagcg cctgctggag acgtttacgc tgttagtcgc
     7021 caatgccctt gagcggctga cgctaaccgc cagcgaagaa caggcgcgga tggcaagcga
     7081 acgtgaacag atccgcaacg ccctgctggc agcgctttcg catgatttac gcacgccgct
     7141 cacggtgctg ttcggtcagg cagaaatctt aacgctcgat ctggcaagcg aaggatcgcc
     7201 ccacgcccgc caggccagcg agattcgtca gcatgtgctg aacactaccc gactggtgaa
     7261 taatctactg gatatggcgc gaattcagtc cggcggcttt aatttgaaga aagagtggtt
     7321 aacgctggaa gaagtggtcg gtagcgcgct gcaaatgctg gaaccgggtt tatcgtcgcc
     7381 catcaatctt tctctgccag aaccgctgac cttaatccac gttgacgggc cactctttga
     7441 acgggtgctg attaatctgc tggagaacgc ggtgaaatat gcgggtgcgc aggccgaaat
     7501 tggtatcgat gcccacgttg agggcgaaaa tctacaactg gatgtctggg ataacggccc
     7561 cggtcttccg ccaggccagg agcagacgat atttgataag tttgctcgcg ggaataaaga
     7621 gtcggcagta ccgggggtag ggcttggact ggcaatttgt cgggcgatag tggatgtaca
     7681 cgggggcact attaccgcgt tcaaccgacc ggaaggtggt gcctgttttc gtgttacact
     7741 tccccagcaa actgcccctg aacttgaaga atttcatgag gatatgtgac aaacgttctg
     7801 attgttgaag atgaacaggc tattcgtcgc tttctgcgca cggcgctgga gggcgacggg
     7861 atgcgcgtct atgaggccga aacgctgcaa cgcggcttgc tggaagcggc tacccgtaag
     7921 ccagatttga ttattctcga tctcggcctg cccgatggtg atgggattga gtttatccgc
     7981 gacctgcgcc agtggagcgc ggtgccggtg attgtgcttt ccgcacgcag cgaagagagc
     8041 gacaaaatcg ccgcgctgga tgccggagcg gatgattatc tgagtaagcc gtttggcatt
     8101 ggcgaattgc aggcccgtct gcgcgtcgct ttacgccgcc actccgccac cgccgcgccc
     8161 gatccgctgg tgaaatattc cgatgttacc gtcgatttag ccgcccgcgt gattcaccgg
     8221 ggtgaggaag aggtgcatct cacaccaatt gagttccacc tgctggcggt gctgctcaac
     8281 aatgccggaa aagtactcac ccagcgccag ctccttaacc aggtgtgggg gccaaacgcg
     8341 gtcgaacaca gtcactattt gcgtatttat atgggacatc tgcgacaaaa actggaacag
     8401 gatcccgccc gcccacgcca tttcattact gaaaccagta ttggctatcg gtttatgctt
     8461 tgaatattaa ttttaataca gcctgccttt tattaattaa agccgtaata ataaatacgg
     8521 ctttttatct taaacaacac acaaaaataa caattcaata ttttatatta ctgagtaaaa
     8581 agctcatcat taaataaatt aagattgaac attttttatt gatcaccttc acag
//
LOCUS       DADMHM010000169         8598 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.172, whole genome shotgun sequence.
ACCESSION   DADMHM010000169 DADMHM010000000
VERSION     DADMHM010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8598)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8598)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8598
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.172"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..182
                     /locus_tag="JN125_003290"
     CDS             <1..182
                     /locus_tag="JN125_003290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312842.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HAY8872951.1"
                     /translation="AIKRLNKLRGWRKVSRSAILREAVEQYLERQQFPVRKAKGGRQK
                     GEVVGVDDQCKEHKE"
     gene            401..643
                     /locus_tag="JN125_003291"
     CDS             401..643
                     /locus_tag="JN125_003291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709694.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872952.1"
                     /translation="MNSLAGIDMGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVD
                     QYLINQSQTARTSVPGIWQGCEEDGVEYQRKLREEW"
     gene            complement(973..1902)
                     /gene="fdhE"
                     /locus_tag="JN125_003292"
     CDS             complement(973..1902)
                     /gene="fdhE"
                     /locus_tag="JN125_003292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory protein FdhE"
                     /protein_id="HAY8872953.1"
                     /translation="MSIRIIPQDELGSSEKRTADMIPPLLFPRLKNLYNRRAERLREL
                     AENNPLDDYLRFAALIAHAQEVVLYDHPLEMDLTARIKEASAQGKPPLDIHVLPRDKH
                     WQKLLMALIAELKPEMSGPALAVIENLEKASTQELEDMASALFASDFSSVSSDKAPFI
                     WAALSLYWAQMANLIPGKARAEYGEQRQYCPVCGSMPVSSMVQIGTTQGLRYLHCNLC
                     ETEWHVVRVKCSNCEQSGKLHYWSLDDEQAAIKAESCDDCGTYLKILYQEKEPKVEAV
                     ADDLASLVLDARMEQEGYARSSINPFLFPGEGE"
     gene            complement(1899..2534)
                     /gene="fdoI"
                     /locus_tag="JN125_003293"
     CDS             complement(1899..2534)
                     /gene="fdoI"
                     /locus_tag="JN125_003293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase cytochrome b556 subunit"
                     /protein_id="HAY8872954.1"
                     /translation="MKRRDTIVRYTAPERINHWITAFCFILAAVSGLGFLFPSFNWLM
                     QIMGTPQLARILHPFVGVVMFASFIIMFFRYWHHNLINRDDIFWVKNIRKIVVNEEVG
                     DTGRYNFGQKCVFWAAIIFLVLLLVSGVIIWRPYFAPAFSIPVIRFALMLHSFAAVAL
                     IVVIMVHIYAALWVKGTITAMVEGWVTSAWAKKHHPRWYREVRKTTEKKAE"
     gene            complement(2531..3433)
                     /gene="fdxH"
                     /locus_tag="JN125_003294"
     CDS             complement(2531..3433)
                     /gene="fdxH"
                     /locus_tag="JN125_003294"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit beta"
                     /protein_id="HAY8872955.1"
                     /translation="MAYQSQDIIRRSATNGLTPAPQARDFQEEVAKLIDVTTCIGCKA
                     CQVACSEWNDIRDTVGNNIGVYDNPNDLSAKSWTVMRFSEVEQNDKLEWLIRKDGCMH
                     CSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDIPRLNPEDNRVYKC
                     TLCVDRVVVGQEPACVKTCPTGAIHFGTKESMKTLASERVAELKTRGYDNAGLYDPAG
                     VGGTHVMYVLHHADKPNLYHGLPENPEISETVKFWKGIWKPLAAVGFAATFAASIFHY
                     VGVGPNRADEEENNLHEEKDEERK"
     gene            complement(3446..6496)
                     /gene="fdnG"
                     /locus_tag="JN125_003295"
     CDS             complement(3446..6496)
                     /gene="fdnG"
                     /locus_tag="JN125_003295"
                     /EC_number="1.17.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(5909..5911),aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase-N subunit alpha"
                     /protein_id="HAY8872956.1"
                     /translation="MQVSRRQFFKICAGGMAGTTAAALGFAPSVALAETRQYKLLRTR
                     ETRNTCTYCSVGCGLLMYSLGDGAKNAKASIFHIEGDPDHPVNRGALCPKGAGLVDFI
                     HSESRLKFPEYRAPGSDKWQQISWEEAFDRIAKLMKEDRDANYIAQNAEGVTVNRWLS
                     TGMLCASASSNETGYLTQKFSRALGMLAVDNQARVUHGPTVASLAPTFGRGAMTNHWV
                     DIKNANLVVVMGGNAAEAHPVGFRWAMEAKIHNGAKLIVIDPRFTRTAAVADYYAPIR
                     SGTDIAFLSGVLLYLLNNEKFNREYTEAYTNASLIVREDYGFEDGLFTGYDAEKRKYD
                     KSSWTYELDENGFAKRDTTLQHPRCVWNLLKQHVSRYTPDVVENICGTPKDAFLKVCE
                     YIAETSAHDKTASFLYALGWTQHSVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSN
                     IQGLTDLGLLSQSLPGYMTLPSEKQTDLQTYLTANTPKPLLEGQVNYWGNYPKFFVSM
                     MKAFFGDKATAENSWGFDWLPKWDKGYDVLQYFEMMKEGKVNGYICQGFNPVASFPNK
                     NKVIGCLSKLKFLVTIDPLNTETSNFWQNHGELNEVDSSKIQTEVFRLPSTCFAEENG
                     SIVNSGRWLQWHWKGADAPGIALTDGEILSGIFLRLRKMYAEQGGANPDQVLNMTWNY
                     AIPHEPKSEEVAMESNGKALADITDPATGAVIVKKGQQLSSFAQLRDDGTTSCGCWIF
                     AGSWTPEGNQMARRDNADPSGLGNTLGWAWAWPLNRRILYNRASADPQGNPWDPKRQL
                     LKWDGTKWTGWDIPDYSAAPPGSGVGPFIMQQEGMGRLFALDKMAEGPFPEHYEPFET
                     PLGTNPLHPNVISNPAARIFKDDAEALGKADKFPYVGTTYRLTEHFHYWTKHALLNAI
                     LQPEQFVEIGESLANKLGIAQGDTVKVSSNRGYIKAKAVVTKRIRTLKANGKDIDTIG
                     IPIHWGYEGVAKKGFIANTLTPFVGDANTQTPEFKSFLVNVEKV"
     gene            6690..7523
                     /gene="fdhD"
                     /locus_tag="JN125_003296"
     CDS             6690..7523
                     /gene="fdhD"
                     /locus_tag="JN125_003296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HAY8872957.1"
                     /translation="MKKTQRKEIENVTNITGVRQIELWRRDDLQHPRLDEVAEEVPVA
                     LVYNGISHVVMMASPKDLEYFALGFSLSEGIIESPRDIFGMDVVPSCNGLEVQIELSS
                     RRFMGLKERRRALAGRTGCGVCGVEQLNDIGKPVQPLPFTQTFDLNKLDDALRHLNDF
                     QPVGQLTGCTHAAAWMLPSGELVGGHEDVGRHVALDKLLGRRSQEGESWQQGAVLVSS
                     RASYEMVQKSAMCGVEILFAVSAATTLAVEVAERCNLTLVGFCKPGRATVYTHPQRLS
                     N"
     gene            7677..>8598
                     /locus_tag="JN125_003297"
     CDS             7677..>8598
                     /locus_tag="JN125_003297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiG family protein"
                     /protein_id="HAY8872958.1"
                     /translation="MKRNLLSSAIIVAIMALGLTGCDDKKAETETPPPANSQPAAPAP
                     EAPVAKAEAKPETPAQPVVDEQAVFDEKMDVYIKCYNKLQIPVQRSLARYVDWLKDFK
                     QGPTGEERTVYGIYGISESNLAECEKGVKSAVALTPALQPIDGVAVSYIDAAVALGNT
                     INEMDKYYTQENYKDDAFAKGKTLHQTFLKNLEAFEPVAESYHAAIQEINDKRQLAEL
                     KNIEEREGKIFHYYSLAVMISAKQINNLISQEKFDVDAAMKKVSELETLVAQAKEADK
                     GGMNFSFINSAGQYQLEAKKYVRRIRDKVPY"
BASE COUNT         2050 a         2177 c         2271 g         2100 t
ORIGIN      
        1 aggcaattaa acggctgaac aagcttcggg gctggcgtaa ggtttcacga tctgcaattt
       61 tacgcgaagc ggttgagcaa tatctggagc ggcagcaatt tccggtgcgt aaagcaaagg
      121 gaggcaggca aaagggggag gtagttggtg ttgatgatca gtgtaaggag cataaggaat
      181 gaaaaaaatt tttcattctt gaatataaaa aaacagatgc ccttattctg gtattaatac
      241 aaggctgttt tacttgaact tataataact gcaactgtta catcgtatct ggaaaacgcc
      301 tcgcaaaaat aaaaaatgat gcgtaaatga gctttcttta aagattcggc aagggtactt
      361 ttctctccat agattcaaaa atgatattgg cgagatattt atgaactctc tggcaggtat
      421 agatatgggc agaattttac tcgatttatc gaatgaggtg attaagcaac ttgatgatct
      481 cgaggtgcag cgtaatcttc ctcgtgcgga cctattaagg gaagcggtag atcaatacct
      541 gataaatcaa tcgcaaacag caagaaccag tgttcctggc atctggcaag ggtgtgagga
      601 agatggtgtc gaatatcagc gtaagctgcg cgaggaatgg taatgggaaa aaatgatgtc
      661 aatcagattg atgacaacgt gcgcgttgtt catgccggat gcggcgtgaa cgccttatcc
      721 ggcctacaaa gtcatgcaaa ttcaatatat tgaagtttat tggtaggcct gataagcgca
      781 gcgcatcagg caatcatacg cttgtcatca gtgacatacc cataacctta tcgatgtgtt
      841 ggagggaaga acgaggcaaa cagacaattg cggcatgatc ttgaatgggt aacgcggaat
      901 acgagagatg gtgtcgtcac accctatgag ctgtaatccg ggcgaccagc gccacccgga
      961 aaacgtcaga gattactccc cttcacccgg aaacaggaac gggttgatgg aactgcgggc
     1021 atagccttct tgctccattc gcgcgtccag taccagagaa gcgaggtcat ctgccacggc
     1081 ttcaactttc ggttcttttt cctgataaag aatcttcagg taagtgccgc agtcatcgca
     1141 gctttcggct ttaatcgcgg cctgttcgtc atccagcgac cagtaatgca gtttgccgct
     1201 ctgttcacag ttgctgcatt ttacgcgcac tacgtgccat tcggtttcac acaggttgca
     1261 gtgcaggtaa cgcagaccct gagtggtgcc aatttgcacc atgctggaca ccggcataga
     1321 accacaaacc gggcaatatt gacgttgctc gccgtattca gcgcgggctt tgccggggat
     1381 cagattggcc atctgcgccc agtagagcga cagtgcagcc cagataaacg gcgctttatc
     1441 gctgctgacg gatgagaaat cagaggcaaa cagtgcgctg gccatatctt ccagctcctg
     1501 agtcgatgcc ttctccagat tctcaatcac tgccagcgcc gggccgctca tttcaggttt
     1561 cagctcagca atcagcgcca tcagcagctt ttgccagtgc ttatcacgcg gcagaacgtg
     1621 aatatccagc gggggcttgc cctgtgcgct ggcttcttta atgcgcgcgg tcagatccat
     1681 ctccagcgga tggtcgtaca gcaccacttc ctgggcgtgg gcgataagcg cagcaaagcg
     1741 caggtaatca tccagcggat tattttctgc cagctcgcgc agacgctcgg cgcggcggtt
     1801 gtataaattc ttgagccgag ggaacaataa cggcggaatc atatccgccg tacgtttctc
     1861 gctcgaaccc agctcatctt gcgggattat gcgaatactc attcagcttt cttttccgtt
     1921 gtcttgcgga cctcacggta ccagcgcggg tgatgtttct tcgcccaggc gctggtaacc
     1981 catccttcca ccatggcggt aatcgtgcct ttcacccaaa gggcggcgta gatatgcacc
     2041 atgataacca caattaacgc cactgcggca aatgaatgca gcattaacgc gaatcggatc
     2101 accgggattg agaaagcagg cgcaaaataa ggacgccaga taatcacgcc gctcaccagc
     2161 agcagaacca ggaaaataat cgccgcccag aaaacgcatt tctgaccgaa gttataacgc
     2221 ccggtgtcac ctacttcctc gttgacgacg atcttacgaa tattcttcac ccaaaagata
     2281 tcatcccgat tgattaggtt gtgatgccag taacggaaaa acatgatgat gaacgaggca
     2341 aacataacca cgccgacaaa cgggtgcaga attcgcgcca gctgcggtgt gcccatgatt
     2401 tgcatcaacc agttgaagga cgggaacaaa aagcccagcc cgctcaccgc cgccaggatg
     2461 aagcagaagg cggtgatcca gtggttgata cgttccggcg cggtgtagcg cacgatggtg
     2521 tcacgtcgtt tcatttgcgc tcctcgtctt tctcttcgtg cagattattc tcttcctcat
     2581 ccgcacggtt cggaccgaca cccacgtagt ggaagatact ggctgcgaag gtagccgcaa
     2641 agccaacagc tgcgagcggt ttccagatgc ctttccagaa tttcacggtt tcgctgattt
     2701 ccgggttctc cggcaagcca tgatacagat ttggcttgtc agcatggtgc agcacgtaca
     2761 taacgtgtgt accaccgacg cctgccggat cgtacaggcc cgcattgtcg taaccgcggg
     2821 ttttcagctc cgccacgcgc tcgctcgcca gcgttttcat cgactctttc gtaccgaagt
     2881 gaatcgcgcc cgttgggcag gtcttcacgc aggctggttc ttgcccaacc accacgcggt
     2941 caacgcacag cgtacatttg tagacgcggt tgtcttccgg gttgaggcgc ggaatgtcga
     3001 acggacagcc cgcaatgcaa taaccgcagc caatgcactg ctcggactgg aagtcgacga
     3061 taccgttggc atactgaata attgcacctt ccgccgggca cgctttcaga cagcctggat
     3121 cggaacagtg catacagccg tctttgcgga tcagccattc cagtttgtcg ttctgctcca
     3181 cttccgagaa gcgcatcacc gtccacgatt tggcacttaa atcattgggg ttgtcgtaca
     3241 ccccaatgtt attgccgacg gtatcgcgaa tgtcgttcca ctctgaacac gccacctgac
     3301 aggctttaca gccgatacag gtggtgacgt cgatgagttt cgccacttct tcctggaagt
     3361 cccgcgcctg aggcgcgggg gtcagaccgt tagtcgcgga acgacgaatg atatcttgag
     3421 attgataagc catatgtcgt ctccgttaca ccttttccac attcacaagg aaggacttaa
     3481 actccggcgt ctgcgtgttc gcatcaccaa cgaatggcgt taaagtattg gcaataaagc
     3541 cttttttagc tacgccttca tagccccagt gaatcggaat accgatggta tcgatatctt
     3601 tgccgttcgc tttcagcgtg cgaatacgtt tggtcaccac cgctttggct ttgatatagc
     3661 cacggttgga ggagactttc acggtatcgc cctgggcaat gccaagttta ttcgccagcg
     3721 actccccgat ttccacaaac tgctctggct gcaaaatcgc gttcaacagc gcgtgtttgg
     3781 tccagtagtg gaagtgctcg gtcagacgat aggtggttcc gacatacggg aacttatcgg
     3841 ctttacccaa tgcttcggcg tcgtctttaa agatacgtgc agccgggttc gagataacgt
     3901 ttggatgcag cgggttagtt cccagcggcg tttcaaacgg ctcgtagtgt tccgggaacg
     3961 gaccttccgc catcttatcg agggcaaaca gacgccccat gccttcctgc tgcatgataa
     4021 acggcccgac gccgctaccc ggaggcgctg cgctgtagtc cggaatatcc cagccggtcc
     4081 acttagtgcc gtcccatttc agcaactgac gcttcggatc ccacgggtta ccctgcggat
     4141 ctgcggaggc gcggttatac agaatgcggc ggttaagcgg ccatgcccat gcccagccca
     4201 gcgtgttacc gaggccagac ggatcggcgt tatcacgacg cgccatctgg ttgccttccg
     4261 gcgtccagct accggcgaaa atccagcagc cacaggaggt tgtaccgtca tcgcgcaatt
     4321 gggcgaacga gctaagttgt tggcctttct tgacgataac cgcaccggtt gccggatcgg
     4381 taatatcggc cagcgcctta ccgttgctct ccatcgctac ttcttccgac ttcggctcat
     4441 gcggaatggc gtagttccag gtcatgttca gcacctgatc cgggttcgcg ccaccctgtt
     4501 cggcatacat cttgcgcaag cgcaggaaga taccggagag gatctcaccg tcagtcagcg
     4561 caatccccgg ggcgtccgca cctttccagt gccactgcaa ccagcgacct gagttaacga
     4621 ttgaaccgtt ctcttctgcg aagcaggtcg atggcagacg gaacacttcg gtctggatct
     4681 tcgacgagtc aacttcgttc agctcaccgt ggttctgcca gaagttagag gtttcagtgt
     4741 tcagcgggtc gatggtgacg aggaacttca gtttcgacag acaaccgatc actttgtttt
     4801 tgttcgggaa tgaggcaaca gggttaaaac cctggcagat atagccattg accttgccct
     4861 ctttcatcat ctcgaagtat tgcaggacgt cgtagccttt atcccacttc ggcaaccagt
     4921 caaagcccca gctattttcc gccgtcgctt tatcaccaaa gaaggccttc atcatagaga
     4981 cgaagaattt cgggtagttg ccccagtagt ttacctggcc ttccagcagc ggttttggcg
     5041 tgttggcggt aaggtaggtt tgcagatcgg tctgcttctc gcttggcagc gtcatgtaac
     5101 ctggcaggct ctgcgacagc agccccaggt ccgtcagccc ctgaatattg gagtgaccgc
     5161 gcagggcgtt aacgccgccg cctgccatcc ccatattgcc gagcagcagc tggatcatcg
     5221 ccatcgtacg aatgttttgc gcaccaacgg agtgttgcgt ccagccgagg gcatacagga
     5281 acgaggcagt tttatcgtga gcactggttt ctgcgatgta ttcgcagact ttcaggaacg
     5341 cgtcttttgg cgtaccacag atgttttcaa ccacatctgg cgtgtagcgg gaaacgtgct
     5401 gtttcagcaa gttccacacg cagcgcggat gttgcagcgt ggtatcgcgt ttggcgaagc
     5461 cgttttcgtc cagttcgtaa gtccaggagg atttatcgta cttgcgtttt tccgcgtcat
     5521 agccggtgaa caggccatct tcaaagccgt aatcctcacg cacgatcagg ctggcgttgg
     5581 tataggcttc ggtgtattcg cggttgaatt tttcattgtt cagcaggtac agcaatacgc
     5641 ctgacaggaa agcaatgtca gtaccggaac gaataggggc atagtagtca gctaccgccg
     5701 ccgtacgcgt aaagcgagga tcgatcacaa tcagcttcgc gccgttgtga attttggctt
     5761 ccatcgccca gcggaacccg accgggtgag cttcagcggc gttaccgccc atcaccacga
     5821 cgaggttggc gttcttgatg tcgacccagt ggttggtcat cgcaccgcga ccaaatgttg
     5881 gagcaagact tgctaccgtt ggtccgtgtc agacacgcgc ctggttgtcg accgcgagca
     5941 tacccagcgc gcgggagaat ttttgcgtta aatagccggt ttcgttactc gacgcggaag
     6001 cacacagcat cccggtggag agccagcggt taacagtcac gccttcggcg ttttgcgcaa
     6061 tgtagttagc atcgcggtct tctttcatca gtttggcgat gcgatcaaac gcctcttccc
     6121 aactgatttg ctgccattta tcagaacctg gcgcacggta ttccggaaac ttcagacggc
     6181 tttcggagtg gatgaaatcc accaggccag cgcctttcgg acaaagtgca ccgcggttga
     6241 ccgggtgatc cggatcgcct tcgatatgga agatagatgc tttggcgttt tttgctccgt
     6301 caccgaggct gtacatcaac agcccacagc ctacggaaca ataggtgcag gtattacggg
     6361 tttcgcgggt gcgcagcagt ttatactgcc gggtttccgc gagtgctacg ctgggtgcaa
     6421 aacctagtgc cgctgccgtg gtgcctgcca taccgccagc gcagatctta aagaactgcc
     6481 ttctgctgac ctgcatggat tgctccttgt ttcgacattg tcacgtccca tttacattcg
     6541 cttgctgcgt gtgcagggag tgggagttat ttttctttgc ggaaggggcc gcaaaggtcc
     6601 agaattggct caatttccct ccatccagga agggtttgta acagaatacc ataatgttgg
     6661 tgtgtgtgtt cttatctggt taagagaaag tgaaaaaaac acagcgaaaa gaaatcgaaa
     6721 atgtgacaaa tatcacaggt gttcgtcaaa ttgagttatg gcggcgtgat gatttacaac
     6781 acccacggtt agatgaggtc gcggaagaag ttcccgttgc gctggtctac aacggcattt
     6841 cgcatgtggt gatgatggcg tcgcccaaag accttgagta ctttgcgctc ggtttttcgc
     6901 tttccgaggg gattatcgaa agtccgcgcg atatcttcgg catggatgtc gttccttcct
     6961 gtaatggtct tgaagtacaa attgagcttt ccagccgccg ctttatgggg ttgaaggagc
     7021 gccgccgggc gctggcggga cgtacgggct gtggcgtatg cggcgtggag caacttaatg
     7081 acatcggaaa accggtgcag ccgctaccgt tcacccagac gtttgatctc aacaaactgg
     7141 atgatgcatt acgtcatctc aacgattttc agccagtggg gcaactgact ggttgtactc
     7201 acgccgctgc ctggatgttg ccatctggcg aactggtcgg cgggcatgaa gacgtgggtc
     7261 gccatgtggc gctggacaaa ctgttaggcc gccggtcaca agaaggggaa agctggcagc
     7321 aaggtgcggt actggtttcc agtcgtgcca gttatgaaat ggtgcaaaag tcggcgatgt
     7381 gcggcgtaga gattttgttt gcggtgtctg ccgcgaccac gcttgctgta gaagtggctg
     7441 agcgctgtaa tctgacactg gtaggttttt gtaaaccggg tcgggcaacg gtttataccc
     7501 atccgcagcg tttgagcaat taattaaaat aagtcctgcg atatatatta aattgcagga
     7561 cttattcatt tcgtgaattt tattattttt atttataaat aaaacgcgtg tagtggcgtt
     7621 ttcttttttc atttattatg ttcactctct tatctatata tttataaggc aattaaatga
     7681 aaaggaattt attatcttcc gctattatag tcgccatcat ggccctcggt ctgacgggtt
     7741 gtgatgataa aaaagccgaa acagaaacgc ccccgcctgc caatagtcaa cctgccgcac
     7801 cagctcctga agctcccgtt gcaaaagcag aagctaaacc tgaaacacct gcgcaaccgg
     7861 tggtcgatga acaagcggtt ttcgacgaaa aaatggatgt ctatatcaag tgctataaca
     7921 agttacagat ccctgtacag cgcagtctgg cgcgttatgt tgactggctg aaagatttta
     7981 aacaggggcc taccggtgaa gagcgtactg tttatggcat ctacggcatt agtgaatcca
     8041 acctcgctga gtgtgaaaaa ggcgtaaaaa gtgctgtggc gttaacgcct gcgctgcaac
     8101 caattgatgg cgtggcggtg agttatatcg atgctgccgt ggcgttgggt aataccatta
     8161 acgaaatgga taaatattac acccaggaaa attataaaga cgatgcgttt gcgaaaggga
     8221 aaacgctgca ccagacattc ttaaaaaatc tggaagcctt tgaacctgta gcagaatctt
     8281 atcatgcggc gattcaggaa attaacgata agcgccagct tgcggaactg aaaaatattg
     8341 aagaaagaga agggaaaata ttccactact attctctggc agtcatgatt tcagcgaaac
     8401 aaattaataa cctgatatcg caagagaagt ttgatgttga tgcggcaatg aagaaagtgt
     8461 ctgaattgga aacgctggtg gcgcaggcca aagaagcgga taaaggcggc atgaatttct
     8521 cgtttattaa ttcggcaggc cagtatcaac tcgaggctaa aaaatacgtt cgccgcatca
     8581 gagataaagt cccgtact
//
LOCUS       DADMHM010000170         8582 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.173, whole genome shotgun sequence.
ACCESSION   DADMHM010000170 DADMHM010000000
VERSION     DADMHM010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8582)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8582)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8582
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.173"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..463)
                     /gene="bglG"
                     /locus_tag="JN125_003298"
     CDS             complement(<1..463)
                     /gene="bglG"
                     /locus_tag="JN125_003298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional antiterminator BglG"
                     /protein_id="HAY8872959.1"
                     /translation="MNMQITKILNNNVVVVIDDQQREKVVMGRGIGFQKRAGERINSS
                     GIEKEYALSSHELNGRLSELLSHIPLEVMATCDRIISLAQERLGKLQDSIYISLTDHC
                     QFAIKRFQQNVLLPNPLLWDIQRLYPKEFQLGEEALTIIDKRLGVQLPKDEV"
     gene            complement(749..1474)
                     /gene="phoU"
                     /locus_tag="JN125_003299"
     CDS             complement(749..1474)
                     /gene="phoU"
                     /locus_tag="JN125_003299"
                     /EC_number="3.5.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HAY8872960.1"
                     /translation="MDSLNLNKHISGQFNAELESIRTQVMTMGGMVEQQLSDAITAMH
                     NQDSDLAKRVIEGDKNVNMMEVAIDEACVRIIAKRQPTASDLRLVMVISKTIAELERI
                     GDVADKICRTALEKFSQQHQPLLVSLESLGRHTIQMLHDVLDAFARMDIDEAVRIYRE
                     DKKVDQEYEGIVRQLMTYMMEDSRTIPSVLTALFCARSIERIGDRCQNICEFIFYYVK
                     GQDFRHVGGDELDKLLAGKDSDK"
     gene            complement(1489..2262)
                     /gene="pstB"
                     /locus_tag="JN125_003300"
     CDS             complement(1489..2262)
                     /gene="pstB"
                     /locus_tag="JN125_003300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000063125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HAY8872961.1"
                     /translation="MSMVETAPSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGP
                     SGCGKSTLLRTFNKMFELYPEQRAEGEILLDGDNILTNSQDIALLRAKVGMVFQKPTP
                     FPMSIYDNIAFGVRLFEKLSRADMDERVQWALTKAALWNETKDKLHQSGYSLSGGQQQ
                     RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARC
                     SDHTAFMYLGELIEFSNTDDLFTKPAKKQTEDYITGRYG"
     gene            complement(2353..3243)
                     /gene="pstA"
                     /locus_tag="JN125_003301"
     CDS             complement(2353..3243)
                     /gene="pstA"
                     /locus_tag="JN125_003301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HAY8872962.1"
                     /translation="MAMVEIQTTAALAESRRKMQARRRLKNRIALTLSMATMAFGLFW
                     LIWILMSTITRGIDGMSLALFTEMTPPPNTEGGGLANALAGSGLLILWATVFGTPLGI
                     MAGIYLAEYGRKSWLAEVIRFINDILLSAPSIVVGLFVYTIVVAQMEHFSGWAGVIAL
                     ALLQVPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGILLAI
                     ARIAGETAPLLFTALSNQFWSTDMMQPIANLPVTIFKFAMSPFAEWQQLAWAGVLIIT
                     LCVLLLNILARVVFAKNKHG"
     gene            complement(3243..4202)
                     /gene="pstC"
                     /locus_tag="JN125_003302"
     CDS             complement(3243..4202)
                     /gene="pstC"
                     /locus_tag="JN125_003302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008806729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstC"
                     /protein_id="HAY8872963.1"
                     /translation="MAATKPAFNPPGKKGDIIFSVLVKLAALIVLLMLGGIIVSLIIS
                     SWPSIQKFGLAFLWTKEWDAPNDIYGALVPIYGTLVTSFIALLIAVPVSFGIALFLTE
                     LAPGWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLFAVYFQEPVGNIMSNIPIVGAL
                     FSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRI
                     VLPFTKNGVIGGIMLGLGRALGETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFA
                     EAESGLHVAALMELGLILFVITFIVLAASKFMIMRLAKNEGAR"
     gene            complement(4289..5329)
                     /gene="pstS"
                     /locus_tag="JN125_003303"
     CDS             complement(4289..5329)
                     /gene="pstS"
                     /locus_tag="JN125_003303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein PstS"
                     /protein_id="HAY8872964.1"
                     /translation="MKVMRTTVATVVAATLSMSAFSVFAEASLTGAGATFPAPVYAKW
                     ADTYQKETGNKVNYQGIGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIG
                     GVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKWDDEAIAKLNPGLKLPSQNIAVVRR
                     ADGSGTSFVFTSYLAKVNEEWKNNVGTGSTVKWPIGLGGKGNDGIAAFVQRLPGAIGY
                     VEYAYAKQNNLAYTKLISADGKPVSPTEENFANAAKGADWSKTFAQDLTNQKGEDAWP
                     ITSTTFILIHKDQKKPEQGTEVLKFFDWAYKTGAKQANDLDYASLPDSVVEQVRAAWK
                     TNIKDSSGKPLY"
     gene            complement(5577..6650)
                     /locus_tag="JN125_003304"
     CDS             complement(5577..6650)
                     /locus_tag="JN125_003304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001685709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HAY8872965.1"
                     /translation="MNKYIKQWCFAVFMLSLSSVALAAPKGICTPDNGVFHSTLDFSG
                     YLITANENKVGTTFNTTVTNGSSYPGRCHCDTGNVGEFPYIYYTSKINQALTYAGVHS
                     NINYYDLNPNLDVGIAIDILGVGYVNAPFEYHANNPSGNTKYNCNRIEPLSISSGAKA
                     IVYFYIKKTFAGKLIIPETKIVTLYGTISRDTPVDYSQPMADVYIRGDITAPQSCEIN
                     NLQPVYFDFKEIPAADFSSVVGSAVTTHKITKTVTIECENLGILNTDDISTSFYATEP
                     NTDNSMVVTSNSNVGIKIYDKNNKEIKVNGGELPTDMGKSTVYGEKSGSVTFSAAPAS
                     LTGARPAPGQFTATATITVEIVR"
     gene            complement(6661..>8582)
                     /locus_tag="JN125_003305"
     CDS             complement(6661..>8582)
                     /locus_tag="JN125_003305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="fimbrial biogenesis outer membrane usher
                     protein"
                     /protein_id="HAY8872966.1"
                     /translation="GPWRLRNYSTLNTSDGRAEYNSISTWIQRDIAALRSQIMIGDTW
                     TASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQNGYVIYQSAV
                     PEGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDVDVSVGEL
                     RDEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGAISFDVTH
                     ARANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRRNSPED
                     FWETGNRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTDDVERLMQFGYSSSWKRLSW
                     NVSWSYSNTARQGTGNNHASDNTSEQIYMLSLSVPLSGWWGNSYATYSVSQNDNSGSS
                     HQLGLSGTALERNNLSWNLMQSYNSHDDEVGGNMSLTYDGSYGTVNGSYNYSQNSQRL
                     NYGIRGGILAHSEGVTLSQELGETIALVKAPGAAGLEIDNMRGAATDWRGYTVKTQLN
                     PYDENRVAISDNYFSKSNIELDNTVVTMVPTRGAVVKAEFVTHVGYRVLFRVLNANGK
                     PVPFGAIAAIQDASLADSGIVGDRGELYLSGLPEKGQVTLSWGENASTKCIFNYSLST
                     PESESGLIEQGVTCH"
BASE COUNT         2209 a         2208 c         1961 g         2204 t
ORIGIN      
        1 ccacttcatc tttcggtaac tgcacgccca accgtttatc aataatggtt aacgcttctt
       61 cccctagctg gaactctttc gggtaaagcc gctggatatc ccacagcaac gggttgggca
      121 gcaacacgtt ttgctgaaag cgtttaatcg caaactggca atggtcagtt agcgagatat
      181 aaatactgtc ctgtaatttt cccaagcgct cctgcgctaa agagataata cgatcacagg
      241 ttgccatcac ctcaagagga atatgactta agagttcgct taatcgcccg ttcagttcat
      301 gactgctcaa ggcatactct ttttctattc cacttgagtt aattctttcg ccagcgcgtt
      361 tttgaaagcc aattcctcgc cccatgacga ctttttcccg ctgttgatca tcaataacca
      421 ccacaacatt attgttgaga attttggtga tttgcatgtt catagcaagg acctttttta
      481 taaacaaaaa aaaccgactt caccagtatt ctctggttat gtcaggtttt gcctgcgaat
      541 gcagtaacaa tccagtcatt tattaatggt ttttataacg aacatccagg ttcggaaatt
      601 aatttaattg cgtgcagaga aaatagcaat gcgctattga taaaaatatg accatgctcg
      661 cagttattaa ctttgtgtaa ttttaggaat ttataaagtt atatataaca aatcccaata
      721 attaagttat tgggatttgt ctggtgaatt atttgtcgct atcttttccc gccagcagtt
      781 tatccagctc atcaccgcct acatgacgga aatcctgccc cttcacgtag tagaagataa
      841 actcacaaat attctggcag cggtcgccaa tacgttcgat agaacgcgcg cagaacagcg
      901 cagtaagtac gctcggaatg gtacgcgaat cttccatcat gtaggtcatc agttgacgaa
      961 caataccttc gtattcctga tcgacttttt tatcttcacg ataaatacgt accgcttcgt
     1021 caatgtccat ccgcgcgaac gcgtccagca cgtcgtgcag catctggatg gtatgacggc
     1081 ccagcgactc cagacttacc agcaacggct gatgctgctg ggagaatttc tccagcgcag
     1141 tacggcagat tttgtccgcc acgtcgccaa tacgctccag ctcggcaatg gttttactga
     1201 tcaccataac cagtcgcagg tcgctcgccg tcggctgacg tttggcgata atgcgcacgc
     1261 aggcttcatc gatcgccact tccatcatgt tgacgttctt gtcgccttcg atcacgcgct
     1321 tcgccagatc gctgtcctgg ttatgcatcg cggtgattgc atcagaaagc tgctgctcca
     1381 ccatgccgcc catggtcatc acctgcgtgc ggatactttc cagttcggcg ttgaactggc
     1441 cggaaatatg tttattaaga ttgagactgt ccataacgca ctcctgaatc aaccgtaacg
     1501 accggtgatg tagtcttctg tttgtttctt cgctggcttg gtgaacagat cgtccgtgtt
     1561 gctgaactca atcaattcgc ccaggtacat aaacgccgtg tggtcggaac aacgcgcagc
     1621 ctgctgcatg ttgtgggtga cgatcaccac ggtgtaatcc tgcttcagtt cggtgatcag
     1681 ctcttcaata cgcccggtag agatagggtc gagcgccgaa cacggttcgt cgagcagcag
     1741 cacttccggg cgaatggcga taccacgcgc aatacacaga cgctgttgct gaccaccaga
     1801 gagagagtaa ccgctctggt gcaatttatc tttggtttcg ttccacaatg cggctttggt
     1861 caatgcccac tgcacgcgct cgtccatgtc ggcacgggag agcttctcaa acagacgaac
     1921 gccaaaagcg atgttgtcgt agatggacat cggaaacggc gtcggtttct ggaacaccat
     1981 gcccactttc gcacgcagca gtgcgatatc ctgagagttg gtcaggatgt tgtcgccatc
     2041 aagcagaatt tcaccttccg cacgctgctc cgggtacagt tcaaacattt tgttgaaggt
     2101 acgcagcagc gtcgatttac cgcagccgga cggcccgata aacgccgtaa cctggttttt
     2161 agcgatatcc aggttgatgt ttttcagggc atggaatttg ccgtagtaga agttcaaatt
     2221 acgaacctga attttactcg gggcagtttc aaccatactc attgcaatct tttcctcatc
     2281 gtgcctgatg cacttcgcta atcaggctta ccgtaggccg gataaggcgt tcacgccgca
     2341 tccggcaaag tgttaaccgt gtttattctt cgcaaaaaca acgcgcgcta gaatgttcag
     2401 cagcagtacg cacagggtaa taatcaatac cccggcccag gccagttgtt gccattccgc
     2461 aaacgggctc atcgcaaact taaagatcgt caccggcagg ttggcgatcg gctgcatcat
     2521 gtccgtgctc cagaactggt tggagagcgc ggtaaacagc agcggcgcgg tttcaccagc
     2581 aatacgggca atcgccagca ggataccggt catgatcccg gacaccgacg ctttcagcgt
     2641 aatcgcagag atcatcttcc acttcggtgt acccagcgca taagccgctt cacgcaggct
     2701 gtccggcacc agtttcagca tgttctcggt ggtgcggata acaatcggca cctgcaacag
     2761 cgccagggca atcacgcccg cccagccaga gaagtgctcc atctgcgcca ccacgatggt
     2821 gtaaacaaac agaccaacca caatcgacgg cgcggagagc agaatgtcgt taatgaagcg
     2881 aatcacttct gccagccagg atttacgacc atattccgcc agataaatcc ccgccataat
     2941 gcccagcggc gtaccgaata ccgtggccca caaaattaac agcccgctac ccgccagggc
     3001 gttcgccaga ccaccacctt ccgtattggg cggcggcgtc atttcagtga acagcgccag
     3061 cgacataccg tcgataccgc gagtgatggt ggacattaaa atccagatca gccagaacag
     3121 gccgaaggcc atcgtcgcca tcgagagcgt cagcgcaata cggtttttga ggcggcgacg
     3181 cgcctgcatt ttgcggcgag attcagccag cgccgcagtg gtttggattt caaccatagc
     3241 cattagcgtg ccccctcatt cttagccagg cgcataatca taaacttcga tgcggcgagg
     3301 acgatgaagg taatcacaaa caggatcagg cccagttcca tcagtgcggc aacgtgcaga
     3361 ccggattccg cttccgcaaa ttcgttcgcc aacgcagagg tgatactatt gcccggcatg
     3421 tacagcgagg cgctgtcgag ctggtaggtg ttaccgatga taaaggtcac cgccatggtt
     3481 tcaccgagcg cgcggcccag ccccagcatg atgccgccga taacaccatt tttggtgaac
     3541 ggaagaacga tacgccagat aacttcccag gtggtgcagc caataccgta ggccgactct
     3601 ttcatcatca ccggggtttg ttcgaacaca tcacgcatta ccgccgcaat gtacggaata
     3661 atcatgatgg cgaggatcac gcctgccgcg aggataccga taccaaatgc ggggccagag
     3721 aacagcgcgc caacaatcgg gatattcgac atgatattgc cgaccggctc ctgaaagtaa
     3781 acggcgaaca gcggcgcaaa gataaacagg ccccacatgc cgtaaacgat acttggaatg
     3841 gctgccagca gctcaatggc gatacccagc gggcgtttca gccagccagg cgcaagctca
     3901 gtcaggaaca gggcgatacc gaaactcacc gggacggcga tcagcagcgc gataaacgaa
     3961 gtcaccaacg taccgtagat cggcaccagc gccccgtaga tatcgttcgg tgcatcccac
     4021 tctttggtcc ataggaaagc cagaccaaat ttctgaatgc tcggccagga ggagatgatc
     4081 agagagacaa taatgccacc caacatcaat agcacaatca gcgccgccag ttttaccagc
     4141 acgctgaaaa ttatgtcgcc ctttttaccc ggtgggttaa aagcaggctt ggttgcagcc
     4201 ataagttact cttcagttaa acgcgtttac aaagtcattt tgtaatgccg gatgcggcgt
     4261 aaaacaccgt acccggcctg gagttttatt agtacagcgg cttaccgcta ctgtctttaa
     4321 tattggtctt ccacgcagcg cgaacctgtt caactacact atccggcagg ctggcgtaat
     4381 ccaggtcgtt cgcctgttta gccccggttt tgtacgccca gtcgaagaat ttcagcactt
     4441 ctgtgccttg ttctggtttc ttctgatctt tgtggatcag aatgaacgtg gtagaggtaa
     4501 taggccatgc atcttcgcct ttctggttgg tcagatcctg agcgaaggtt ttgctccagt
     4561 ctgcaccttt tgctgcatta gcgaagtttt cttcggtcgg actaaccggt ttaccatcag
     4621 cggagatcag tttggtgtac gccaggttgt tctgcttcgc gtaagcatat tcaacataac
     4681 caattgcacc cggcagacgc tgaacgaacg cggcgatacc gtcgttacct ttaccgccca
     4741 aaccgatcgg ccattttacg gtagagccag taccaacgtt gtttttccac tcttcgttca
     4801 ctttcgccag gtagctggtg aagacgaagg aagtcccgga gccatctgcg cggcgtacta
     4861 cagcaatgtt ttgtgaaggc agtttcagac ccggattcag tttggcgatg gcttcatcat
     4921 cccacttctt gattttgccc aggtagatgt cgccgagggt tttaccatcc agcaccagtt
     4981 cgccagactt cagccctgga atgttaaccg ccagcaccac gccgccaatc acggtcggga
     5041 actggaacag accttcctga gccagttttt cgtcagacag cggcgcgtca gaggcaccaa
     5101 aatcaacggt attagcgata atctgtttta cgccaccgga agaaccgata ccctggtagt
     5161 taactttatt accggtttct ttctggtaag tgtcagccca tttggcatac accggcgcag
     5221 ggaaggttgc acctgcacct gtcaggcttg cttctgcaaa cacagagaaa gcgctcatcg
     5281 ataaggtcgc ggcgacaaca gttgcgacgg tggtacgcat aactttcata atgtctcctg
     5341 ggaggattca taaagcattg tttgttggct acgagaagca aaataggaca aacaggtgac
     5401 agttatatgt aaggaatatg acatttttat gacagaaagg aattaccaaa taacttactg
     5461 attttaaatg tgaagatgaa aatcccacat gtcatctttt tgtcatgatg catttaaaag
     5521 tgataaagaa atgggtgaga tgacaacgat gtgatgaaca atcgttgtca gacctattag
     5581 cgcacaatct caacagttat cgtcgctgtt gcagtaaatt gccccggggc tgggcgagct
     5641 ccagtaaggc tcgcaggagc agctgaaaaa gttacactac ctgatttttc accatacact
     5701 gttgatttac ccatgtctgt tggcaactca ccaccgttca ctttgatttc cttattattt
     5761 ttgtcgtaaa tttttatccc cacgttagag tttgaagtta cgaccattga attgtccgta
     5821 ttgggttcgg tagcataaaa agacgtactg atatcatcgg tattcagtat ccccaggttt
     5881 tcacactcaa tagtgaccgt tttagtaatt ttatgtgttg ttaccgcact tccaacaaca
     5941 gatgaaaaat ctgcagctgg tatttcttta aaatcaaaat aaactggctg taaattattt
     6001 atttcgcaac tttgcggagc tgtaatatcg ccccgaatat aaacatcagc catcggctgt
     6061 gagtaatcca ccggggtgtc acggctaatt gttccataca atgtcactat ctttgtttca
     6121 ggaataatca attttcctgc aaatgtcttc ttgatataaa aatatactat cgctttagcc
     6181 ccactagata tacttaaagg ttcaatgcgg ttgcaattgt actttgtatt accagacggg
     6241 ttgttagcat gatattcaaa aggtgcattc acatacccaa ccccaagaat atctatagca
     6301 atcccaacat caaggttcgg attaagatca taataattaa tattagagtg aaccccagca
     6361 taagttaatg cctggtttat ttttgacgta taatagatat aggggaattc tcctacgtta
     6421 ccagtatcac aatgacagcg tccaggatat gaggatccat tagttacagt ggtgttaaat
     6481 gtcgttccaa ccttattttc gttcgcggta ataagatatc ccgagaaatc aagcgtactg
     6541 tgaaatacgc cattatcagg ggtacagata cctttaggag ctgcaagtgc tacactactt
     6601 aacgagagca taaacacagc aaagcaccac tgtttgatat acttgttcat aaaaatcctt
     6661 ttaatgacat gtcacaccct gttcaattaa tccgctctca ctttctggtg tcgaaagtga
     6721 ataattgaag atgcattttg ttgaggcgtt ttctccccag gataacgtaa cctgtccttt
     6781 ttctggtaga ccagaaagat aaagttcgcc acggtcaccg acaattcctg aatctgccaa
     6841 acttgcatct tgtatcgcag caatggctcc aaaaggtacc ggtttaccat ttgcatttaa
     6901 cactctgaag agaacgcgat aacccacatg agtcacaaac tccgctttaa ccactgcacc
     6961 acgcgtggga accatcgtaa cgacggtatt atcaagttct atattcgact tcgagaaata
     7021 gttatcgctg attgctaccc gattttcatc ataagggttt agctgtgtct tgaccgtata
     7081 gccgcgccag tccgtcgcag caccgcgcat attatctatt tctaacccgg cggccccagg
     7141 tgctttaaca agagcaatag tttcacctaa ctcctgactt aacgttaccc cttcgctgtg
     7201 tgccagaatt ccccctctga taccataatt cagcctctgg gaattttggc tgtagttata
     7261 gctgccgttc accgtgccat aagagccatc ataggtcagg gacatattac cgccaacctc
     7321 atcatcatga ctgttatagg actgcattaa attccatgaa aggttatttc tttccagcgc
     7381 cgtaccgctg agtccgagtt gatgtgagct accggaatta tcgttttgcg aaacagaata
     7441 ggtggcgtaa ctattacccc accagcccga taaaggaaca gataaagaga gcatgtagat
     7501 ctgctcactg gtgttatcac tggcatggtt gttccccgtc ccctgtctgg cagtattgga
     7561 ataactccag gagacgttcc acgagagacg cttccagcta ctgctgtagc caaattgcat
     7621 taatcgttcg acatcatcgg tatgccagta ttgttgccgg cttaatgtca ggtataaatt
     7681 gccataatct ctccccaacg actgcgttag cgttccctcc acgcgactac gtcggttacc
     7741 tgtttcccaa aagtcttcag ggctgttgcg ccgcgatgcc cactcattga gggtatagta
     7801 gccctcggtg gagtaacgat agccaaccag gcgcaagcta gtgtctgtgt cgtcaaatcg
     7861 ttttgaatag agaaagcgat atgactgacc cgtttctgta tcatcatggc taaaattcgc
     7921 acgagcatgt gtcacatcga aagaaattgc gcccaaagcg ccaagatctt taccgacacc
     7981 cagagctgca gaaccataat tttcagcagc ctgcatacct ccatataaag tgatcccgtg
     8041 ggaaaaacca tgaagtattt gcgcctgaag gacgtccggt gtaaatccgt cttcatcgcg
     8101 caattcaccc acgctgacat caacatctgt ctgaccttca cgtttaagaa tcgccaatga
     8161 agcataaggt tgggtgaatc gttgttcgct accgtcttct tctttgatgg ttacgtccaa
     8221 atcgccacct gtactggcgg tgttgagatc ggtgatctca aaagcacctt ctggaacggc
     8281 agactgataa atcacgtagc cattctgccg aatgatgacg gtggcgttgg actttgcaat
     8341 cccacgaacc acaggagcaa agccattctg gctggcgggt agcatatcgt tatcagtata
     8401 caaacgcgcg ccgcgaattt gcgtactgtc gaaaatatcg ctcgccgtcc acgtatcacc
     8461 aatcataatc tggcttctta acgcggcaat atcgcgctgt atccaggtac taatggagtt
     8521 gtattccgca cggccatcgc tggtgtttaa agtactgtaa ttacgtagcc gccacggtcc
     8581 aa
//
LOCUS       DADMHM010000171         8516 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.174, whole genome shotgun sequence.
ACCESSION   DADMHM010000171 DADMHM010000000
VERSION     DADMHM010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8516)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8516)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8516
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.174"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..259
                     /gene="csgC"
                     /locus_tag="JN125_003306"
     CDS             <1..259
                     /gene="csgC"
                     /locus_tag="JN125_003306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706954.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="curli assembly protein CsgC"
                     /protein_id="HAY8872967.1"
                     /translation="TIIPEVTLTQSCLCRVQILSLREGGSGQSQTKQEKTLSLPANQP
                     IALTKLSLNISPEDRVKIVVTVSDGQALHLSQQWPPSSEKS"
     gene            380..691
                     /locus_tag="JN125_003307"
     CDS             380..691
                     /locus_tag="JN125_003307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HAY8872968.1"
                     /translation="MFRPFLNSLMLGSLFFPFIAIAGSTAQGGVIHFYGQIVEPACDV
                     STQSSPVEMNCPQNGSVPGKTYSSKALMSGNVKNAQVASVKVQYIDKQKKLAVMNIEY
                     N"
     gene            787..1320
                     /gene="ymdB"
                     /locus_tag="JN125_003308"
     CDS             787..1320
                     /gene="ymdB"
                     /locus_tag="JN125_003308"
                     /EC_number="3.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetyl-ADP-ribose deacetylase"
                     /protein_id="HAY8872969.1"
                     /translation="MKTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGP
                     ALLDACLKVRQQQGDCPTGHAVITLAGDLHAKAVVHTVGPVWRGGEQNEDQLLQDAYL
                     NSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYD
                     EENAHLYERLLTQQGDE"
     gene            1262..2743
                     /locus_tag="JN125_003309"
     CDS             1262..2743
                     /locus_tag="JN125_003309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706957.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase D family protein"
                     /protein_id="HAY8872970.1"
                     /translation="MMKKTPTSTKDSLPNKEMNDLPRLASAVLPLCSQHPGQCGLFPL
                     EKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRLLLDDN
                     NTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVV
                     TLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDV
                     PEGEMADRIELPASWHNDAMTHRYLRQMESSPFINHLVDGTLPLIWAKTRLLSDDPAK
                     GEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTN
                     SLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGITGNSGASLHAKT
                     FSIDGKTVFIGSFNFDPRSTLLNTEMGFVIESETLAQLIDKRFIQSQYDAAWQLRLDR
                     WGRINWVDRHAKKEMILKKEPATSFWKRVMVRLASILPVEWLL"
     gene            complement(2751..3908)
                     /gene="mdoC"
                     /locus_tag="JN125_003310"
     CDS             complement(2751..3908)
                     /gene="mdoC"
                     /locus_tag="JN125_003310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706958.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis protein MdoC"
                     /protein_id="HAY8872971.1"
                     /translation="MNPVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAEP
                     SLWLTLFNDFIHSFRMLVFFVISGYFSYMLFLRYPLKKWWKVRVERVGIPMLTAIPLL
                     TLPQFIMLQYVKGKAESWPGLSLYDKYNTLAWELISHLWFLLVLVVMTTLCVWIFKRI
                     RNNLENSDKTNKKFSMVKLSVIFLCLGIGYAVIRRTIFIVYPPILSNGMFNFIVMQTL
                     FYLPFFILGALAFIFPHLKALFTTPSRGCTLAAALAFVAYLLNQRYGSGDAWMYETES
                     VITMVLGLWMVNVVFSFGHRLLNFQSARVTYFVNASLFIYLVHHPLTLFFGAYITPHI
                     TSNWLGFLCGLIFVVGIAIILYEIHLRIPLLKFLFSGKPVVKRENDKAPAR"
     gene            4302..5837
                     /gene="mdoG"
                     /locus_tag="JN125_003311"
     CDS             4302..5837
                     /gene="mdoG"
                     /locus_tag="JN125_003311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis protein MdoG"
                     /protein_id="HAY8872972.1"
                     /translation="MMKMRWLSAAVMLTLYTSSSWAFSIDDVAKQAQSLAGKGYEAPK
                     SNLPSVFRDMKYADYQQIQFNHDKAYWNNLKTPFKLEFYHQGMYFDTPVKINEVTATA
                     VKRIKYSPDYFTFGDVQHDKDTVKDLGFAGFKVLYPINSKDKNDEIVSMLGASYFRVI
                     GAGQVYGLSARGLAIDTALPSGEEFPRFKEFWIERPKPTDKRLTIYALLDSPRATGAY
                     KFVVMPGRDTVVDVQSKIYLRDKVGKLGVAPLTSMFLFGPNQPSPANNYRPELHDSNG
                     LSIHAGNGEWIWRPLNNPKHLAVSSFSMENPQGFGLLQRGRDFSRFEDLDDRYDLRPS
                     AWVTPKGEWGKGSVELVEIPTNDETNDNIVAYWTPDQLPEPGKEMNFKYTITFSRDED
                     KLHAPDNAWVQQTRRSTGDVKQSNLIRQPDGTIAFVVDFTGAEMKKLPEDTPVTAQTS
                     IGDNGEIVESTVRYNPVTKGWRLVMRVKVKDAKKTTEMRAALVNADQTLSETWSYQLP
                     ANE"
     gene            5830..8373
                     /gene="mdoH"
                     /locus_tag="JN125_003312"
     CDS             5830..8373
                     /gene="mdoH"
                     /locus_tag="JN125_003312"
                     /EC_number="2.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucans biosynthesis glucosyltransferase MdoH"
                     /protein_id="HAY8872973.1"
                     /translation="MNKTTEYIDAMPIAASEKAALPKSDIRAVHQALDAEHRTWARED
                     DSPQGSVKARLEQAWPDSLADGQLIKDDEGRDQLKAMPEAKRSSMFPDPWRTNPVGRF
                     WDRLRGRDVTPRYLARLTKEEQESEQKWRTVGTIRRYILLILTLAQTVVATWYMKTIL
                     PYQGWALINPMDMVGQDLWVSFMQLLPYMLQTGILILFAVLFCWVSAGFWTALMGFLQ
                     LLIGRDKYSISASTVGDEPLNPEHRTALIMPICNEDVNRVFAGLRATWESVKATGNAK
                     HFDVYILSDSYNPDICVAEQKAWMELIAEVGGEGQIFYRRRRRRVKRKSGNIDDFCRR
                     WGSQYSYMVVLDADSVMTGDCLCGLVRLMEANPNAGIIQSSPKASGMDTLYARCQQFA
                     TRVYGPLFTAGLHFWQLGESHYWGHNAIIRVKPFIEHCALAPLPGEGSFAGSILSHDF
                     VEAALMRRAGWGVWIAYDLPGSYEELPPNLLDELKRDRRWCHGNLMNFRLFLVKGMHP
                     VHRAVFLTGVMSYLSAPLWFMFLALSTALQVVHALTEPQYFLQPRQLFPVWPQWRPEL
                     AIALFASTMVLLFLPKLLSILLIWCKGTKEYGGFWRVTLSLLLEVLFSVLLAPVRMLF
                     HTVFVVSAFLGWEVVWNSPQRDDDSTSWGEAFKRHGSQLLLGLVWAVGMAWLDLRFLF
                     WLAPIVFSLILSPFVSVISSRATVGLRTKRWKLFLIPEEYSPPQVLVDTDRFLEMNRQ
                     RSLDDGFMHAVFNPSFNALATAMATARHRASKVLEIARDRHVEQALNETPEKLNRDRR
                     LVLLSDPVTMARLHFRVWNSPERYSSWVSYYEGIKLNPLALRKPDAASQ"
BASE COUNT         2152 a         2018 c         2219 g         2127 t
ORIGIN      
        1 taccattatt cctgaagtca ctcttactca atcttgtctg tgcagagtac aaatattgtc
       61 cctgcgcgaa ggcggttcag ggcaaagtca gacgaagcaa gaaaagaccc tctcattgcc
      121 tgctaatcaa cctattgctt tgacgaagtt gagtttaaat atttccccgg aagatcgggt
      181 gaaaatagtt gttactgttt ctgatggaca ggcacttcat ttatcacaac aatggccgcc
      241 ctcttcagaa aagtcttaat ttgttgaaat gtcgagcata agatgaatct ggagagaatg
      301 gtctgctgcg aatcagccaa cctgaaagta tggataacac aaccctcaag gatgactaat
      361 cattgaggaa atagaataaa tgttcagacc ttttttaaac tctcttatgc tcggcagttt
      421 gttttttcct tttattgcca tcgcaggaag caccgcgcaa gggggcgtga tccattttta
      481 tggccaaatt gtggaaccgg catgtgacgt cagcacccag tcatcacccg tagaaatgaa
      541 ctgcccacag aatggttctg ttccgggaaa aacctattcc agcaaagcgt taatgagcgg
      601 caatgtcaaa aacgcgcaag tagcctcagt aaaagtgcag tatattgata aacagaaaaa
      661 gctggctgta atgaacatcg aatataacta agtttctgaa caacgcacgt tgctgagtag
      721 aaaaatgcga tttaaccaaa aaacctgctg tacacttaag aaacaagaag gtgttaagga
      781 ggcgttatga aaacgcgtat tcatgttgtg cagggtgata ttaccaaact ggccgttgat
      841 gtgattgtga atgcggctaa tccgtcatta atgggaggcg gcggcgtcga tggggccatt
      901 catcgcgcag cgggtccggc cctgctggat gcctgtttaa aagtcaggca acagcagggc
      961 gattgcccta cggggcatgc cgttattacg cttgcaggcg atcttcacgc taaagccgta
     1021 gtacacaccg tcgggccagt ctggcgtggt ggtgaacaaa acgaagacca gcttttgcag
     1081 gatgcctatc tcaatagtct gcgactggtg gcggcaaaca gctatacgtc agtggcattt
     1141 cctgcaatca gtactggggt ttatggttac cctcgtgcgg cagcggctga aatcgcagta
     1201 aaaaccgttt cagaatttat tacccgtcac gctttacccg aacaggtata ctttgtctgt
     1261 tatgatgaag aaaacgccca cctctacgaa agactcctta cccaacaagg agatgaatga
     1321 tttgccccgg ctggcgagcg cggtgctgcc actgtgttcg caacatcccg gtcagtgtgg
     1381 tcttttccct ctggagaaaa gtctggatgc gtttgccgcc cggtatcgtc tggccgaaat
     1441 ggcagagcat acgctggatg ttcagtatta catctggcag gacgatatgt cgggtcggtt
     1501 actgttttcc gccctgttag ccgcagcaaa gcgtggcgtt cgcgtccgtt tgttgctgga
     1561 cgacaacaat acgcccggac ttgacgatat tttacgcttg cttgacagcc atccccgcat
     1621 tgaagtccgg ctttttaatc ctttctcgtt tcgcttgctg cgtccgcttg gttatatcac
     1681 tgacttttcc cgtctcaatc gccgtatgca caataaaagt ttcactgtcg atggcgtggt
     1741 taccttggtg ggaggacgaa atattggtga tgcctatttt ggggcagggg aagagccact
     1801 tttttcggat ttagatgtta tggcaatagg acccgtggta gaggacgttg ccgatgattt
     1861 cgcccgctac tggtattgca aatcggtttc acccttacag caggtgctgg atgtcccgga
     1921 aggtgaaatg gcggatcgca tcgagttacc cgcctcctgg cataacgatg ccatgacgca
     1981 tcgttactta cgccaaatgg aatccagtcc gtttataaat catctggttg atggaacgtt
     2041 gccgcttatc tgggcgaaaa cacgtttatt aagtgatgat ccggcgaaag gggagggcaa
     2101 ggcaaaacgg cattcactgt taccgcagcg cctgttcgat atcatgggct cacccagtga
     2161 acgcatcgat attatctctt cctattttgt accgacacgc gcaggtgtgg cgcaactctt
     2221 acggatggtg agaaaagggg taaagattgc gatcctaacc aattctcttg ccgctaacga
     2281 tgttgctgtc gtccatgccg gatacgcgcg ctggcgcaaa aaattgctcc gctatggcgt
     2341 ggaattatat gaactcaagc cgacgcgtga acaaagtagt acgttacacg atcgcggcat
     2401 aaccggtaat tccggtgcca gcctgcatgc taaaaccttt agcatcgatg gtaaaacggt
     2461 gtttatcggc tctttcaatt tcgatccacg ttcgacattg ctcaatactg aaatgggctt
     2521 cgtgatagag agcgaaacgc tggcacagtt aattgataaa cgctttatac agagccagta
     2581 tgatgcggcc tggcagctcc gtctggacag gtggggacgg atcaactggg ttgatcgtca
     2641 tgcaaagaaa gagatgattc tcaaaaaaga acccgccacc agtttctgga agcgggttat
     2701 ggtcagactg gcgtcgatat tgcccgtgga atggttattg taaatgtggc ttaacgggct
     2761 ggtgctttat cgttctcacg cttaacaacc ggtttaccag aaaacaaaaa cttcagtaac
     2821 gggatgcgta aatgaatttc atacagaatt atcgcaatcc ctactacgaa tatcaggcca
     2881 cagagaaaac caagccagtt ggaggtgatg tgcggtgtaa tgtatgcgcc gaaaaacagc
     2941 gttaacgggt ggtgaaccag atagataaat agcgatgcgt taacaaagta agtcacccgc
     3001 gctgactgga agttaagcaa acggtggcca aaggagaaga ccacattcac catccacaga
     3061 ccgaggacca tggtgatcac cgactcggtt tcgtacatcc aggcatcgcc actgccatag
     3121 cgttggttga gtaaataagc gacaaatgcc aatgctgctg caagggtaca gccacgagac
     3181 ggcgtggtaa acaaggcttt aagatgaggg aaaatgaaag ccagtgcacc gaggataaag
     3241 aacggcaaat aaaatagcgt ttgcatgaca ataaaattga acatgccatt actcagaatg
     3301 ggcggataca caataaaaat cgttcttctt attaccgcat agccgatgcc gaggcataaa
     3361 aaaatcaccg atagttttac catcgagaat tttttattcg ttttatcaga attttctaaa
     3421 ttatttctga tgcgtttaaa tatccatacg cacagcgtcg tcatgactac taacaccagt
     3481 aaaaaccaca ggtgtgatat taattcccag gccaacgtat tatatttgtc atacaatgac
     3541 agcccaggcc aactttccgc tttccctttg acgtattgca gcataataaa ttgcggcaat
     3601 gtcagtaagg ggatggctgt taacatcggg atacctacac gttcgacacg tactttccac
     3661 cattttttca agggatagcg taaaaaaagc atgtaggaaa agtagccgga tataacgaaa
     3721 aataccagca tgcggaacga gtggatgaag tcattaaaaa gggtcagcca caatgacggt
     3781 tcggcgctat tcacatgcca tgtatggctc gaatagatta aagaaatatg aaaagggatc
     3841 cctaacaaca tcagccaggc gcggatggag tcgaggaaat attcacgttg cgcgggtact
     3901 ggattcatat atggttaact aatctcggat ttttcgtctt atccctgtcg ggttatgcct
     3961 ttaggcttgt tgccatagcg acaccgacct gaccgcgcca ggcgcaggct tcaaggtttt
     4021 tatgcatagc atcatcgcta ccactaacca gaatggaagc gtctgtaaga cggttgataa
     4081 ataaaattgc tggcaaaccc tacacgaagt cgatgcttct gtctttagga gaagcacgga
     4141 aagtgaaaac ggttgcaatc aggtgcttaa tccatgagcc agcgtgctga acgataccgg
     4201 gattctgttg tcggaatggc tggttatcca ttaaaataga tcggatcgat ataagcacac
     4261 aaagggggaa gtgcttacta attatgaaac ataaactaca aatgatgaaa atgcgttggt
     4321 tgagtgctgc agtaatgtta accctgtata catcttcaag ctgggctttc agtattgatg
     4381 atgtcgcaaa gcaagctcaa tccttagccg ggaaaggcta tgaggcgccc aaaagcaact
     4441 tgccctccgt tttccgcgat atgaaatacg cggactatca gcagatccag tttaatcatg
     4501 acaaagcgta ctggaacaat ctgaagaccc cattcaaact cgagttctac catcagggta
     4561 tgtacttcga taccccggtc aaaataaatg aagtgactgc caccgcagtc aaacgaatca
     4621 aatacagccc ggattatttc actttcggcg atgttcagca tgacaaagac acggtaaaag
     4681 accttggttt tgccggtttt aaagtgcttt acccgatcaa cagcaaagat aaaaacgatg
     4741 aaatcgtcag catgctcggg gccagctatt tccgcgtgat tggtgcaggt caggtttatg
     4801 gcctttctgc ccgcggcctg gcaattgata ccgccttgcc atcgggtgaa gaatttccac
     4861 gcttcaaaga gttctggatc gagcgtccaa aaccgactga taaacgttta accatttatg
     4921 cattgcttga ctcgccgcgc gcgacaggtg cttacaaatt cgtggttatg ccagggcgtg
     4981 acacggttgt ggatgtgcag tcgaaaatct atctgcgcga taaagtcggc aaactggggg
     5041 ttgcaccgtt aaccagtatg ttcctgtttg ggccgaacca accgtcgcct gcaaataact
     5101 atcgtccgga gttgcacgac tctaacggtc tctctatcca tgccggtaat ggcgaatgga
     5161 tctggcgtcc gttgaataac ccgaaacatt tagcggttag cagcttctcg atggagaacc
     5221 cgcaaggctt cggtctgttg cagcgcggtc gtgatttctc ccgctttgaa gatctcgatg
     5281 atcgttacga tcttcgtcca agcgcatggg tgactccgaa aggggagtgg ggtaaaggca
     5341 gcgttgagct ggtggaaatt ccaaccaacg atgaaaccaa cgataacatc gtcgcttact
     5401 ggacgccgga tcagctgccg gagccgggta aagagatgaa ctttaaatac accatcacct
     5461 tcagccgtga tgaagacaaa ctgcatgcgc cagataacgc atgggtgcaa caaacgcgtc
     5521 gttcaacggg ggatgtgaag cagtcgaacc tgattcgcca gcctgacggt actatcgcct
     5581 ttgtggtcga ttttaccggc gcagagatga aaaaactgcc agaggatacc ccggtcacag
     5641 cgcaaaccag cattggtgat aatggtgaga tagttgaaag cacggtgcgc tataacccgg
     5701 ttaccaaagg ctggcgtctg gtgatgcgtg tgaaagtgaa agatgccaag aaaaccactg
     5761 aaatgcgtgc tgcgctggtg aatgccgatc agacgttgag tgaaacctgg agctaccagt
     5821 tacctgccaa tgaataagac aactgagtac attgacgcaa tgcccatcgc cgcaagcgag
     5881 aaagcggcat tgccgaagag tgatatccgc gccgtacatc aggcgctgga tgccgaacac
     5941 cgcacctggg cgcgggagga tgattccccg caaggctcgg taaaggcccg tctggaacaa
     6001 gcctggccag attcacttgc tgatggacag ttaattaaag acgacgaagg gcgcgatcag
     6061 ctgaaggcga tgccagaagc aaaacgctcc tcgatgtttc ccgacccgtg gcgtaccaac
     6121 ccggtaggcc gtttctggga tcgcctgcgt ggacgcgatg tcacgccgcg ctatctggct
     6181 cgtttgacca aagaagagca ggagagcgag caaaagtggc gtaccgtcgg taccatccgc
     6241 cgttacattc tgttgatcct gacgctcgcg caaactgtcg tcgcgacctg gtatatgaag
     6301 accattcttc cttatcaggg ttgggcgctg attaatccta tggatatggt tggtcaggat
     6361 ttgtgggttt cctttatgca gcttctgcct tatatgctgc aaaccggtat cctgatcctc
     6421 tttgcggtac tgttctgttg ggtgtccgcc ggattctgga cggcgttaat gggcttcctg
     6481 caactgctta ttggtcgcga taaatacagt atatctgcgt caacagttgg cgatgaacca
     6541 ttaaacccgg agcatcgcac ggcgttgatc atgcctatct gtaacgaaga cgtgaaccgt
     6601 gtttttgctg gcctgcgtgc aacgtgggaa tcagtaaaag ccaccgggaa tgccaaacac
     6661 tttgatgtct acattcttag tgacagttat aacccggata tctgcgtcgc agagcaaaaa
     6721 gcctggatgg agcttatcgc tgaagtcggt ggcgaaggtc agattttcta tcgccgccgc
     6781 cgtcgccgcg tgaagcgtaa aagcggtaat atcgatgact tctgccgtcg ctggggcagc
     6841 cagtacagct acatggtggt gctggatgct gactcggtaa tgaccggtga ttgtttgtgc
     6901 gggctggtgc gcctgatgga agccaacccg aacgccggga tcattcagtc gtcgccgaaa
     6961 gcgtccggta tggatacgct gtatgcgcgc tgtcagcagt tcgcgacccg cgtgtatggg
     7021 ccactattta cagccggttt gcacttctgg caacttggcg agtcgcacta ctggggacat
     7081 aacgcgatta tccgcgtgaa accgtttatc gagcactgcg cactggctcc gctgccgggc
     7141 gaaggttcct ttgccggttc aatcctgtca catgactttg tagaagcggc gttgatgcgc
     7201 cgtgcaggtt ggggggtctg gattgcttac gatctcccgg gttcttatga agaattaccg
     7261 cctaacttgc ttgatgagct aaaacgtgac cgccgctggt gccacggtaa cctgatgaac
     7321 ttccgtctgt tcctggtgaa gggtatgcac ccggttcacc gtgcggtgtt cctgacgggc
     7381 gtgatgtctt atctctccgc tccgctgtgg tttatgttcc tcgcgctctc tactgcattg
     7441 caggtagtac atgcgttgac cgaaccgcaa tacttcctgc aaccacggca gttgttcccg
     7501 gtgtggccgc agtggcgtcc tgagctggcg attgcacttt ttgcttcgac tatggtgctg
     7561 ttgttcctgc cgaagttatt gagcattttg cttatctggt gcaaaggaac gaaagaatac
     7621 ggcggcttct ggcgcgttac attatcgttg ctactggaag tgcttttttc cgtgctgctg
     7681 gctccggtac gcatgctgtt ccatacggtc ttcgttgtca gcgcgttcct tggctgggaa
     7741 gtggtgtgga attcaccgca gcgtgatgat gactccactt cctggggtga agcgttcaaa
     7801 cgccacggct cacagctgct gttagggtta gtgtgggctg ttgggatggc gtggctggat
     7861 ctgcgtttcc tgttctggct ggcaccgatt gtcttctcgt tgatcctgtc accgtttgtt
     7921 tcggtgattt ccagccgtgc caccgttggt ctgcgaacca aacgctggaa actgttcctg
     7981 atcccggaag agtattcacc gccgcaggtg ctggttgata ccgatcgctt ccttgagatg
     8041 aatcgtcaac gctcccttga tgatggtttt atgcacgcgg tgtttaaccc gtcatttaac
     8101 gctctggcaa ccgcaatggc gaccgcgcgt caccgcgcca gtaaggtgct ggaaatcgcc
     8161 cgtgaccgcc acgttgaaca ggcgcttaac gagacgccag agaagctgaa tcgcgatcgt
     8221 cgcctggtgc tgctaagcga tccggtgacg atggcccgtc tgcatttccg tgtctggaat
     8281 tccccggaga gatattcttc atgggtgagt tattacgaag ggataaagct caatccactg
     8341 gcattgcgta aaccggatgc ggcttcgcaa taaaaacgta gttgcctgat gcgctacgct
     8401 tatcaggccc acatcgttcc tgcaatttat tgattttgca agattttgta ggttgggtaa
     8461 ggcgttcacg ccgcatccgg caaaaacaac gagccaataa aaataccggc gttatg
//
LOCUS       DADMHM010000172         8504 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.175, whole genome shotgun sequence.
ACCESSION   DADMHM010000172 DADMHM010000000
VERSION     DADMHM010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8504)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8504)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8504
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.175"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..540)
                     /locus_tag="JN125_003313"
     CDS             complement(<1..540)
                     /locus_tag="JN125_003313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418538.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1705 domain-containing protein"
                     /protein_id="HAY8872974.1"
                     /translation="MLKRLLKRPSLNLLAWLLLAAFYISICLNIAFFKQVLQALPLDS
                     LHNVLVFLSMPVVAFSVINIVLTLSSFLWLNRPLACLFILVGAAAQYFIMTYGIVIDR
                     SMIANIIDTTPAESYALMTPQMLLTLGFSGVLAALIACWIKIKPATSRLRSVLFRGAN
                     ILVSVLLILLVAALFYKDYA"
     gene            complement(644..1981)
                     /gene="adiC"
                     /locus_tag="JN125_003314"
     CDS             complement(644..1981)
                     /gene="adiC"
                     /locus_tag="JN125_003314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine/agmatine antiporter"
                     /protein_id="HAY8872975.1"
                     /translation="MSSDADAHKVGLIPVTLMVSGNIMGSGVFLLPANLASTGGIAIY
                     GWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNI
                     AMVVIGVGYLSYFFTILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI
                     PIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVK
                     NPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGA
                     IVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILM
                     TIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTT
                     IAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNPYPLDAPISKD"
     gene            complement(2118..2879)
                     /locus_tag="JN125_003315"
     CDS             complement(2118..2879)
                     /locus_tag="JN125_003315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HAY8872976.1"
                     /translation="MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNI
                     IDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAA
                     QHSMMPAETESEKERTRALLFTVLSRFLDSKKFLSLMMYMLRNCVSDSVYQIIESDIH
                     KDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQ
                     SCGYNSTSYFISVFKDFYGMTPLHYVSQHRERTVA"
     gene            complement(3204..5471)
                     /gene="adiA"
                     /locus_tag="JN125_003316"
     CDS             complement(3204..5471)
                     /gene="adiA"
                     /locus_tag="JN125_003316"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418541.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine decarboxylase"
                     /protein_id="HAY8872977.1"
                     /translation="MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDG
                     FAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHERQQNVPVFLLGDREKALAAMD
                     RDLLELVDEFAWILEDTTDFIAGRAVAAMTRYRQQLLPPLFSALMKYSDIHEYSWAAP
                     GHQGGVGFTKTPAGRFYHDYYGENLFRTDMGIERTSLGSLLDHTGAFGESEKYAARVF
                     GADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSR
                     NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQ
                     DLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPSDHNGPTVFATHSTHKLLNALS
                     QASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEV
                     IDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQD
                     YWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRH
                     GIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKRHYDANTPLAQVMPELVEQYPD
                     TYANMGIHDLGDTMFAWLKENNPGARLNEAYSGLPVAEITPREAYNAIVDNNVELVSI
                     ENLPGRIAANSVIPYPPGIPMLLSGENFGDKNSPQVSYLRSLQSWDHHFPGFEHETEG
                     TEIIDGIYHVMCVKA"
     gene            complement(5670..6578)
                     /gene="melR"
                     /locus_tag="JN125_003317"
     CDS             complement(5670..6578)
                     /gene="melR"
                     /locus_tag="JN125_003317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator MelR"
                     /protein_id="HAY8872978.1"
                     /translation="MNTDTFMCSSDEKQTRSPLSLYSEYQRMEIEFRAPHIMPTSHWH
                     GQVEVNVPFDGDVEYLINNEKVNINQGHITLFWACTPHQLTDTGTCQSMAIFNLPMHL
                     FLSWPLDKDLINHVTHGMMIKSLATQQLSPFEVRRWQQELNSPNEQIRQLAIDEIGLM
                     LKRFSLSGWEPILVNKTSRTHKNSVSRHAQFYVSQMLGFIAENYDQALTINDVAEHVK
                     LNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDKSILDIALTAGFRSSSRFYS
                     TFGKYVGMSPQQYRKLSQQRRQTFPG"
     gene            6861..8216
                     /gene="melA"
                     /locus_tag="JN125_003318"
     CDS             6861..8216
                     /gene="melA"
                     /locus_tag="JN125_003318"
                     /EC_number="3.2.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-galactosidase"
                     /protein_id="HAY8872979.1"
                     /translation="MMTAPKITFIGAGSTIFVKNILGDVFHREALKTAHIALMDIDPT
                     RLEESHIVVRKLMDSAGASGKITCHTQQKEALQDADFVVVAFQIGGYEPCTVTDFEVC
                     KRHGLEQTIADTLGPGGIMRALRTIPHLWQICEDMTEVCPDATLLNYVNPMAMNTWAM
                     YARYPHIKQVGLCHSVQGTAEELARDLNIDPSTLRYRCAGINHMAFYLELERKTADGS
                     YVNLYPELLAAYEAGQAPKPHIHGNTRCQNIVRYEMFKKLGYFVTESSEHFAEYTPWF
                     IKPGREDLIERYKVPLDEYPKRCVEQLANWHKELEEYKNASRIDIKPSREYASTIMNA
                     IWTGEPSVIYGNVRNDGLIDNLPQGCCVEVACLVDANGIQPTKVGTLPSHLAALMQTN
                     INVQTLLTEAILTENRDRVYHAAMMDPHTAAVLGIDEIYALVDDLIAAHGDWLPGWLH
                     R"
     gene            8319..>8504
                     /locus_tag="JN125_003319"
     CDS             8319..>8504
                     /locus_tag="JN125_003319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418544.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="melibiose:sodium transporter MelB"
                     /protein_id="HAY8872980.1"
                     /translation="MSISMTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLV
                     GTLFLVARIWDAINDPIM"
BASE COUNT         2178 a         2008 c         2202 g         2116 t
ORIGIN      
        1 ggcgtagtct ttataaaaca gtgcggcgac cagcaaaatc agtagtacag aaaccagaat
       61 attggctcca cggaaaagaa cactgcgcag acgcgaggtg gcaggtttga tttttatcca
      121 gcaggcaatc agcgcagcaa gcacgccgct gaatcccagc gttaataaca tttgcggtgt
      181 catcagcgca taactttctg ccggagtggt atcaataata ttggcaatca tcgagcggtc
      241 gatgacgatg ccgtaagtca ttatgaaata ttgtgcagcc gcgccaacca gaataaacag
      301 gcaggccagt ggtcgattaa gccataagaa agagcttagt gtcaggacaa tattaatcac
      361 gctgaaagcg acgaccggca tcgacaagaa aaccagtacg ttatgcagcg aatccagcgg
      421 cagcgcctgc aacacctgtt taaaaaaggc aatattcagg cagatagaga tataaaaagc
      481 ggccaacaat agccaggcga gtaaattcaa agagggtctt tttagtaggc gcttcaacat
      541 cacggtgttt ccatcgaaca aagtgcgcat atgctcgcaa agcaaaatta agccaacctt
      601 aagttcttaa ggttggcttt tatgtttgct ggattaaggg gaattaatct ttgcttattg
      661 gtgcatctaa gggatacggg tttttatgta gccggttgta attcagcgca tacatggcgg
      721 tgatgaccat cagggtgaca aatgaccaca taacctcttt cgctccggac cccaccacgg
      781 cccagatgca gtagaggaag gcaatggtag taactgccag atatgccggg cgtgctttac
      841 caaagtgacc gtgtccgagc agcagtaacg ccgcacaggt gtaaagatat ggcaccagtg
      901 taaagatgac cgagacggaa gaaaccagac cgaactcttt ggtcgcgttt ggtgaaatgc
      961 tgctgagctg gaagatggtc atcaaaatac cgacgataat cagccccgcc actggcgtac
     1021 ccgctttatt tacacgggca aaaatcggtg ggaacagtcc gtcatcggca gcggctttcg
     1081 ccgtttgacc cgccagcaac gtccagccgc ccagtgaacc taagcaaccc gcagctgcgc
     1141 agaaggaaac aatggccccg gcggtgtcac ccaacgccat ccgtgcggca tcaccgaatg
     1201 gcgaagcaga aacgcgcagt gcggcattag ggatcatccc cataatcgcg gtggtagaaa
     1261 gtacatagca aacggcggca atcaataccc caccaatggt ggcgataggg acattgcgtt
     1321 tcgggttttt caccacacct gcggcaacgg aggcactttc cacaccgatg aacgaccaca
     1381 gcgtaacgtt aagggtactt tgaattgcac cgaaggtgcc caggccgctg acgttccatg
     1441 ccgccatata ggtttcacca cggaaccaga accagccaaa tacggcaatc ccgacgatgg
     1501 ggatcagcgc cagcacggtg gcaactgcct gcacacgggt gatcattttc ggaccgacaa
     1561 tgttcagcag gacgaagatc cacagcacca cgacgcaggt gatggttaat accaatggat
     1621 ctttcagaat cgtgaagaag taacttaaat atcctacgcc aatgaccacc atggcgatat
     1681 tgccgatcca gcaggccagc cagtagagga cgttggtttg ataaccgaga aacgggccaa
     1741 agcagcggcg ggcgtaagcg taagaaccac caggacttgg gtcgaggaac gacattttgg
     1801 cgtataccat cgagagcccc agtgcaccga taatcgtcac caaccatcca taaatggcaa
     1861 tcccgccagt ggaggccagg tttgcaggta acagaaaaac acctgacccc ataatattcc
     1921 ccgacaccat cagggtgacg gggattaagc ccactttgtg agcatcagca tccgaagaca
     1981 taattaaact cctgcgaagg cgagcttcgt gacaataaat tacgtcatat catacgcctg
     2041 cattcgatag ttgaattatt atcgaccggg ttatcgctga tgccgttatt aatatagctc
     2101 ttcgttaagg ttaaaaatca ggcgacagtg cgttctctgt gctgactaac ataatgcagc
     2161 ggcgtcatac cgtagaagtc tttaaagaca gaaataaagt acgacgtact gttgtagccg
     2221 caggactgtg atacctgaga gatattttta ccgtccatca ttaattcatt tacggcataa
     2281 cgcatgcggc aggtggtgat tatttggcta taactggtgt tttcgctttt cagctttttc
     2341 tttaacagac ttgggctaag acataaacaa ctggctacca tactaagatt ccagtctttg
     2401 tgaatatcgc tttcaataat ttgataaacg ctgtcactta cacaattacg taacatatac
     2461 atcattaatg aaaggaattt tttactgtcg agaaaacggg atagcaccgt gaataataat
     2521 gcgcgtgttc gttccttttc tgactcagtt tctgcgggca tcatgctgtg ttgcgcggca
     2581 acgcgaaaga cgtctggcgt caggcatggc agggtgagta tgggcgtagc gctacgttgc
     2641 catactggta tttgcgagag atctttattc agaaaccgga ggtaatcttt gatgatgtcg
     2701 tgactaatat gagcaaccaa agtgttgtta agagaggaga cgtcgataat attattttca
     2761 caatttaata acgccatatg gttagcttta aggctaatag gttctttccc attcaccctt
     2821 atccagacat ctttttcagt caataaaaca atacaaggtt ggtcgctgca aatcctcata
     2881 catgtactcc tgagtgcgaa taaaagacca gttctcgcta aagcaaagcg ataccgggaa
     2941 atggttatat aattgtatga cgaatataaa catacataaa aataacgagt tttactaata
     3001 ttacaaattt ttatagtaat ttctcatgta catatttttt tacagggtaa ataacaggca
     3061 aaaaaaagcg cggggtgggg ccgcgcaaaa agtatgacat ttttgtttgc agcaattttt
     3121 atgaaaacgt tgccatactc aaaaggccta aggccaggcg gcgtaatgtt atttaaacaa
     3181 ttacgccttc agcggaatag tggttacgct ttcacacaca taacgtggta aataccgtca
     3241 ataatttcag tcccttcagt ttcgtgttca aatccaggga aatggtggtc ccaggattgc
     3301 agcgagcgta aataacttac ttgcggactg tttttatcgc cgaagttttc accagacagc
     3361 agcatcggga ttcctggcgg atatgggata actgagtttg ccgcgatgcg tcctggcaga
     3421 ttttcaatgg ataccaattc gacattgttg tcgacaatcg cgttgtacgc ttcacgcggg
     3481 gtgatttccg ccaccggcag gccggaatag gcttcgttca accgtgcgcc agggttgttt
     3541 tctttcagcc aggcaaacat ggtgtcaccc agatcgtgaa tccccatgtt cgcgtaagtg
     3601 tcaggatatt gttcaacaag ttccggcatc acctgcgcca gcggtgtgtt ggcgtcatag
     3661 tggcgtttga aggagcaaag ggtgttaacc agagtccccc atttcccacg ggttacgccc
     3721 atagagaaca ggaacataat ttggaagtca gtggtgcggg taggcacaat gccgtggcga
     3781 ccaagccagg cagtgaccag cgccgccgga acaccggttt cttccagttc accatcttca
     3841 cccattcccg gagcaaggat gctgacttta atcgggtcga gcatactcca gttatccgga
     3901 atatctttga agccgtgcca gctttcgccc ggatgcatta cccagtagtc ctgaacggtg
     3961 gtcagcagtt tggttggtgc gtcagcaaag tcataggttt tgccggtttg tgggtcggtg
     4021 acgacttctt tgttccacgg tttgaagaac cagctaccgt cagcggtgaa ctctttatac
     4081 agccgcgcca tcgcctgacg gaaatcaacc gcttcgtcga tcacttcctg cgtcagtgac
     4141 aggccgctgt tgccgtccat catcgacacc gccacgtcgt tggatgcgca gatggcatac
     4201 agcggggagg tggtggcatg catcatgtag gcctggttga agcgggagaa gttaatcgcc
     4261 ccacgacctt cacgtacatg aatataagaa gcctgtgaaa gcgcattcag cagtttgtgg
     4321 gtggagtggg tggcgaaaac ggtaggaccg ttgtgatcgc taggttcgcc gcgcatggca
     4381 tagtgatcgg catagatcgg gttgaaacgt gcatagccgt accaggcttc gtcaaagtgc
     4441 agacgatcgg aggttttttc cagcagatcc tgcgcttctt tagcgttata acacacgccg
     4501 tcataggtgc agttggtcac cacgcagtaa gacggttttt gcccggcttt gtctttagtc
     4561 agcgggcttt cactgatttt cttctgcaag gtttcaggtt gcatttcctg cggatagatt
     4621 ggcccgataa tgccgtagcg gttgcggctt ggcaccatgt agaccggttt cgcgcctgtc
     4681 agcatcaagc cttgttcgat ggatttatgg cagttacggt caacgaccac gacatcgtta
     4741 tcggtcatgc aagcctgcat gatggtgcgg ttagagccgg aagtaccgac gactaccgac
     4801 caggagcgat cggcaccaaa tacgcgtgcg gcatattttt cgctttcgcc aaatgcgcca
     4861 gtatggtcaa gcaaagaacc gagggaagtt cgttcgatgc ccatatcggt gcggaacaga
     4921 ttttctccat agtagtcatg gtagaaacgt ccggcgggtg ttttggtaaa accaacgccg
     4981 ccctggtggc ctggcgctgc ccaggaatat tcatggatgt cgctatattt catcagcgcg
     5041 ctgaacagtg gcggcaacag ctgctggcgg tagcgggtca tagcggcaac ggcgcgtccg
     5101 gcgataaagt cggtggtatc ttccagaatc caggcgaatt catcgacaag ctccagcagg
     5161 tcgcgatcca ttgcggcgag ggctttttcc cgatcgccca acaggaagac cggcacgttt
     5221 tgttggcgct catgaagctt accgatcaat tgtctgacgt tttgatgttc gtccggatgt
     5281 tccatttgat agctgaacat caggcagtca atggcttcgt ttgaagagag aatggcaaaa
     5341 ccatcatcaa aggaggtgga tttaatcacg gtaacatttt gctggcttaa agcatctgcc
     5401 agacgctcaa cggcgttacc gacccaggtg tcttgatgga gaaactcgct ttcaacaatt
     5461 aatactttca tcattgctta cccggttatg aaggaatctt cgttgcgggc aagtatcttc
     5521 cggccttttc gggctgtaaa gcgcgtgaaa aacaaacatt tttgaaatat ttatttttat
     5581 aaacaatgcg ttatgtgatt attttaaatt attttcactg cttgttatcg acggctaaac
     5641 tatttttttg gctgatactg atatcgtctt tagccgggaa acgtctggcg gcgctgttgg
     5701 ctaagtttgc ggtattgttg cggcgacatg ccgacatatt tgccgaacgt gctgtaaaaa
     5761 cgactacttg aacgaaagcc tgccgtcagg gcaatatcga gaatactttt atcggtatcg
     5821 ctcagtaacg cgcgaacgtg gttgatgcgc atcgcggtaa tgtactgttt catcgtcaat
     5881 tgcatgaccc gctggaatat ccccattgca tagttggcgt taagtttgac gtgctcagcc
     5941 acatcgttga tggtcagcgc ctgatcatag ttttcggcaa taaagcccag catctggcta
     6001 acataaaatt gcgcatggcg cgagacgctg tttttgtgtg tgcgcgaggt tttattgacc
     6061 agaatcggtt cccagccaga gaggctaaat cgcttgagca tcaggccaat ttcatcaatg
     6121 gcgagctggc gaatttgctc gttcggactg tttaattcct gctgccagcg gcgcacttca
     6181 aacgggctaa gttgctgtgt ggccagtgat ttgatcatca tgccgtgagt gacgtggtta
     6241 atcaggtctt tatccagcgg ccaggagaga aacagatgca tcggcagatt aaaaatcgcc
     6301 atgctctgac aggttccggt atctgttagt tggtgcggtg tacaggccca gaacagcgtg
     6361 atatgaccct gattgatatt cactttttca ttgttgatca ggtattccac atcgccatcg
     6421 aaaggcacat tcacttcgac ctgaccatgc cagtggctag tgggcatgat atgcggtgcg
     6481 cgaaactcaa tctccatccg ctggtattcc gaatacagcg acagcgggct gcgggtctgt
     6541 ttttcgtcgc tgctgcacat aaacgtatct gtattcatgg atggctctct ttcctggaat
     6601 atcagaatta tggcaggagt gagggaggat gactgcgagt gggagctcgg ttttcaccct
     6661 cttcccagag aggcgagggg agcgtccgag catcatgagg ccgaaaactc tgcttttcag
     6721 gtaacttatt accataaact cagatttact gctgcttcac gcaggatctg agtttatggg
     6781 aatgctcaac ctggaagccg gaggttttct gcagattcgc ctgccatgat gaagttattc
     6841 aagcaagcca ggagatctgc atgatgactg cacccaaaat tacatttatc ggcgctggtt
     6901 cgacgatttt cgttaaaaat attcttggtg atgtgttcca tcgagaggcg ctgaaaacgg
     6961 cgcatattgc cctgatggac attgatccca cccgcctgga agagtcgcat attgtggtgc
     7021 gtaagctgat ggattcagca ggggccagcg gcaaaatcac ctgccacacc caacagaaag
     7081 aagccttaca ggatgccgat tttgtcgtgg tggcatttca gattggcggt tatgaacctt
     7141 gcacggtgac tgatttcgag gtctgtaagc ggcatggtct ggaacaaacc attgccgata
     7201 cgttggggcc gggcggtatt atgcgcgcgc tacgtaccat tccgcatctg tggcaaattt
     7261 gcgaggacat gacggaagtc tgccccgatg ccacattgct caactacgtt aacccaatgg
     7321 cgatgaatac ctgggcgatg tatgcccgct atccgcatat caaacaggta gggctgtgcc
     7381 attcggtgca gggaacggcg gaagagctgg cgcgtgacct caatatcgat ccgtccacgc
     7441 tgcgttaccg ttgcgctggt atcaaccata tggcgtttta cctggaactg gagcgtaaaa
     7501 ccgccgacgg cagttacgtg aatctctacc cggaactgct ggcggcttat gaagcagggc
     7561 aggcaccgaa gccacatatt catggtaata ctcgctgcca gaatattgtg cgctacgaaa
     7621 tgttcaaaaa gctgggctac ttcgtcacgg aatcgtcaga acattttgcc gaatatacgc
     7681 cgtggtttat taagccaggt cgtgaggatt tgattgagcg ttataaagta ccgctggatg
     7741 agtacccgaa acgctgcgtc gagcagctgg cgaactggca taaagagctg gaggagtata
     7801 aaaacgcctc ccggattgat attaaaccgt cacgggaata tgccagcaca atcatgaacg
     7861 ctatctggac tggcgagccg agtgtgattt acggcaacgt ccgtaacgat ggtttgattg
     7921 ataacctgcc acaaggatgt tgcgtggaag tagcctgtct ggttgatgct aatggcattc
     7981 agccgaccaa agtcggtacg ctaccttcgc atctggccgc cctgatgcaa accaacatca
     8041 acgtacagac gctgctgacc gaagctattc ttacggaaaa tcgcgaccgt gtttaccacg
     8101 ccgcgatgat ggacccgcat actgccgccg tgctgggcat tgacgaaata tatgctcttg
     8161 ttgacgacct gattgccgcc cacggcgact ggctgccagg ctggttgcac cgttaaaacg
     8221 cgactaaacg ctactgcgcc gggggattta ttccggcgca cacctctgac gataccaata
     8281 acagaaggcg ggcgttggta acagcgaccc gataccctat gagcatttca atgactacaa
     8341 aactcagtta tggatttgga gcgttcggga aggattttgc gatcggcatt gtgtatatgt
     8401 acctcatgta ttactacacc gatgtcgttg ggctgtctgt gggtttggtc ggtactttgt
     8461 ttctggtggc gaggatctgg gatgctatta acgatccgat tatg
//
LOCUS       DADMHM010000173         8347 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.176, whole genome shotgun sequence.
ACCESSION   DADMHM010000173 DADMHM010000000
VERSION     DADMHM010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8347)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8347)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8347
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.176"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            194..448
                     /locus_tag="JN125_003320"
     CDS             194..448
                     /locus_tag="JN125_003320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8872981.1"
                     /translation="MLKIIPGATGYFNKTLNSNQFDNEDAIKDKLDNRGSIKGKLNNI
                     YGKSIDYAALRHRDIIIAKIDLFIQRITHNLWHARKKMCF"
     gene            472..1179
                     /locus_tag="JN125_003321"
     CDS             472..1179
                     /locus_tag="JN125_003321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2713 family protein"
                     /protein_id="HAY8872982.1"
                     /translation="MWVNKYIDDCTDEDLNDRDFIASVVDRAIFHFAINSICNPGDNK
                     DATPIEQCTFDVETKNGLPSTVQLFYEESKDNEPLANIHFQAIGSGFLTFVNTCQEHD
                     DNSLKLFASLLISLSYSSAYADLSETVYINENNESYLKAQFEKLSQRDMKKYLGEMKR
                     LADGGEMNFDGYLDKMSHLVNEGTLDPDILSKMRDAAPQLISFAKSFDPTSKEEIKIL
                     TDTSKLIYDLFGVKSEK"
     gene            1542..2579
                     /gene="dusA"
                     /locus_tag="JN125_003322"
     CDS             1542..2579
                     /gene="dusA"
                     /locus_tag="JN125_003322"
                     /EC_number="1.3.1.-"
                     /EC_number="1.3.1.91"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine(20/20a) synthase DusA"
                     /protein_id="HAY8872983.1"
                     /translation="MHGNSEMQKINQTSAMPEKTDVHWSGRFSVAPMLDWTDRHCRYF
                     LRLLSRNTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAEA
                     RGYDEINLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDD
                     QDSYEFLCDFINTVSGKGECGMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDF
                     PHLTMSINGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDAYPV
                     AVVRAMYPYIERELSQGTYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADINVL
                     EHALKLVADKR"
     gene            2713..2955
                     /gene="pspG"
                     /locus_tag="JN125_003323"
     CDS             2713..2955
                     /gene="pspG"
                     /locus_tag="JN125_003323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313059.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="envelope stress response protein PspG"
                     /protein_id="HAY8872984.1"
                     /translation="MLELLFVIGFFVMLMVTDVSLLGIITALVVATAIMFLGGMLALM
                     IKLLPWLLLAIAVVWVIKAIKAPKVPKYQRYDRWRY"
     gene            complement(3120..4103)
                     /locus_tag="JN125_003324"
     CDS             complement(3120..4103)
                     /locus_tag="JN125_003324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone oxidoreductase"
                     /protein_id="HAY8872985.1"
                     /translation="MATRIKFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFID
                     TYIRSGLYPPPSLPSGSGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNIN
                     ADKAAILPAAISFEQAAASFLKGLTVYYLLCKTYEIKPDEQFLFHAAAGGVGLIACQW
                     AKALGAKLIGTVGTAQKAQSALKAGAWQVINYREENLVERLKEITGGKKVRVVYDSVG
                     RDTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREEL
                     TEASNELFSLIASGVIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLLIP"
     gene            4186..5601
                     /locus_tag="JN125_003325"
     CDS             4186..5601
                     /locus_tag="JN125_003325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase DnaB"
                     /protein_id="HAY8872986.1"
                     /translation="MAGNKPFNKQQAEPRERDPQVAGLKVPPHSIEAEQSVLGGLMLD
                     NERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQLDSVGG
                     FAYLAELSKNTPSAANISAYADIVRERAVVREMISVANEIAEAGFDPQGRTSEDLLDL
                     AESRVFKIAESRANKDEGPKNIADVLDATVARIEQLFQQPHDGVTGVNTGYDDLNKKT
                     AGLQPSDLIIVAARPSMGKTTFAMNLVENAAMLQDKPVLIFSLEMPSEQIMMRSLASL
                     SRVDQTKIRTGQLDDEDWARISGTMGILLEKRNIYIDDSSGLTPTEVRSRARRIAREH
                     GGIGLIMIDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQR
                     ADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVR
                     LTFNGQWSRFDNYAGPQYDDE"
     gene            5654..6733
                     /gene="alr"
                     /locus_tag="JN125_003326"
     CDS             5654..6733
                     /gene="alr"
                     /locus_tag="JN125_003326"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HAY8872987.1"
                     /translation="MQAATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLE
                     TARTLPDADAFGVARLEEALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNE
                     EQLAALEEASLDEPVTVWMKLDTGMHRLGVRPEQAGAFYHRLTQCKNVRQPVNIVSHF
                     ARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDWVRPGIILYGVS
                     PLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGD
                     GYPRAAPSGTPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERI
                     AEMTKVSAYELITRLTSRVAMKYVD"
     gene            6986..8179
                     /gene="tyrB"
                     /locus_tag="JN125_003327"
     CDS             6986..8179
                     /gene="tyrB"
                     /locus_tag="JN125_003327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709866.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid transaminase"
                     /protein_id="HAY8872988.1"
                     /translation="MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIP
                     QLKAVAEAEARLNAQPHGASLYLPMEGLNSYRHAIAPLLFGADHPVLQQQRVATIQTL
                     GGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNSVRF
                     NDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIKILKARELIPFLDIAYQGF
                     SAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVLCEDAEAAGRVLGQL
                     KATVRRNYSSPPNLGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEM
                     PERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKA
                     FAAVM"
BASE COUNT         2102 a         1933 c         2127 g         2185 t
ORIGIN      
        1 tgtcgtacca ttatcaacac gataataatt aataattcat ttttaaataa attgcttcaa
       61 gttaactcgc tatttattta actgggttta aacgcatacc tgtagttcag aaattatgag
      121 cgatttttga tagtgaccag atggcaaaag aattataagg aggacacggt acgacaaaaa
      181 aggtagatga atcatgttga agataatacc cggtgcaact ggatacttta ataaaacact
      241 caattcaaat caattcgata atgaagatgc aatcaaagat aaattagata atagaggttc
      301 aatcaaaggt aaattaaata atatatatgg taaatctatt gattatgcag cgctgcgtca
      361 tcgggatata attattgcaa aaatagattt gtttattcaa cgaatcacgc ataatttatg
      421 gcatgcacgt aaaaaaatgt gtttttaatt gagcaaataa atgatctcaa aatgtgggtc
      481 aataagtata ttgacgattg cactgatgag gatttaaacg atcgtgactt tattgcatca
      541 gttgttgacc gggctatttt tcatttcgcg attaatagta tatgtaatcc tggggataat
      601 aaagatgcga ctcccattga acaatgtact tttgatgtag aaactaagaa tggccttccc
      661 tccacggttc agctatttta tgaggaatct aaggataatg aacctttagc gaatatacat
      721 tttcaagcaa taggttctgg ttttttaacg tttgttaata cctgccagga acatgatgac
      781 aacagcttaa aattatttgc ttcgctgtta atttcacttt catattctag tgcctacgca
      841 gatttatcag aaacagtgta tattaatgaa aataatgaga gctacctgaa agctcagttt
      901 gaaaaattat ctcaacgtga tatgaagaag tacctgggag agatgaagcg tctggctgat
      961 gggggagaaa tgaattttga tggctatctg gataagatgt cacatctggt gaatgaaggg
     1021 acgctcgatc ctgatatttt aagcaaaatg cgagatgctg caccacaatt aattagcttc
     1081 gcgaagtcgt ttgacccaac ctcaaaggaa gagattaaaa tacttacaga cacttctaaa
     1141 ttaatttatg atttgttcgg ggttaaatcg gagaaataat atgtgaagtt cttcgatagt
     1201 atggaaggca ttatataaaa ggacccaata tttattgggt ccttttttct ctatcaatgc
     1261 tattagcagg gagatatatc accagagttt aatgtgtgat tttttattta tcgtcgaacc
     1321 tggattgttt atcattggcc ttaacaaagt taacggctaa taagattatt tccatcactt
     1381 cgtgagagct tcatgccttg agaggatctc aattttcttt tgcaatgaga caggcgcttc
     1441 ctgttgttat ggtatagtac cccgctattg agcctcctga atagtgatgc tgaataacat
     1501 aaccccatga tatatcgata aaataatctc tacatttgaa aatgcacggt aattctgaaa
     1561 tgcaaaaaat caaccaaacc agcgcaatgc ctgaaaaaac tgacgttcac tggagtggtc
     1621 ggtttagcgt tgcaccaatg ctcgactgga cggacagaca ttgccgctat ttcttgcgtc
     1681 tgctttcccg caatacgttg ctgtataccg aaatggtgac cacaggggcg attattcacg
     1741 gtaaaggtga ttacctggcg tacagtgaag aagaacatcc ggtagcgttg caactcggcg
     1801 gtagcgatcc ggcggcgctg gcacagtgtg cgaagctggc agaagcgcgt ggatatgatg
     1861 agatcaacct gaatgtcggc tgcccgtctg accgggtgca gaacggcatg tttggtgcgt
     1921 gtctgatggg taatgcgcag ctggttgccg attgcgtgaa agcgatgcgc gatgtggtgt
     1981 cgattccggt gacggtgaaa acgcgtattg gcatcgatga ccaggacagc tatgaatttc
     2041 tctgcgattt catcaacacc gtttccggca aaggcgagtg tgggatgttc atcatccatg
     2101 cacgtaaagc ctggctttcg gggttaagcc cgaaagaaaa ccgtgaaatc ccgccgctcg
     2161 attatccgcg tgtgtatcaa ctgaagcgtg actttccgca tctgacaatg tcgattaacg
     2221 gtggtatcaa gtcgctggaa gaggccaaag cacacctgca acatatggat ggcgtgatgg
     2281 tcgggcgcga ggcgtatcag aatccgggta ttctggcggc ggtagaccgg gagatctttg
     2341 gttcctcgga taccgatgcc tatccggtgg cggtagtgcg cgccatgtat ccgtacattg
     2401 agcgtgaact cagccagggg acgtatctcg gccatattac ccggcatatg ttgggcttgt
     2461 tccagggtat tcctggcgcg cggcagtggc ggcgttattt aagtgaaaat gcccataaag
     2521 cgggtgcaga cattaatgtg ttggaacacg cgctcaaact ggtggcggat aagcgttaac
     2581 ttttcaccaa aaagtagtca aattcaccac gccctgcgca ccgtcgcggg gcgttttgct
     2641 gttaaatcaa tagattattt ttggcatgat tcttgtaatg ccagcaagag atttcatatt
     2701 tgggagagca tcatgctgga actacttttt gtgattggct tttttgtcat gctgatggtc
     2761 accgacgttt cgttgctggg cattatcacc gcgctggttg tggcgacggc cattatgttc
     2821 ctcggcggta tgctggcatt gatgattaag ttgctgccgt ggttactact ggcgattgcg
     2881 gtggtgtggg ttattaaggc gattaaagca ccaaaagtgc ctaaatatca gcgttatgac
     2941 cgctggcgtt actaagggat tgtgcggatg atcacaacct aaggttttat ccttagaaca
     3001 aaataggaat tgataatcaa atctgtcact attgcgcctc taacagattc atcgtgctgt
     3061 accctacata cagccgacta taaaaagaaa gggcttccca ggtggaagcc ctatttcttt
     3121 tatggaatca gcaggctgga accttgcgtc gcccggcttt ccagaatctc atgcgcacgc
     3181 tgcgcatcct tcagcggata tttctgctgc tcggcgacat cgaccttaat cacaccgctg
     3241 gcaatcaaag agaacagttc attactggcc tcggttaatt cctcccgcgt ggtgatatag
     3301 ccttgcaggg aagggcgtgt cacatacaac gagccttttt gattgagaat gcctaagttc
     3361 acaccggtaa ccgcacctga tgagttgcca aaactgacca ttaagccgcg gcgttgcagg
     3421 caatccagcg accgttccca ggtgtctctg cccacggaat cgtacactac gcgcactttc
     3481 ttaccgccgg tgatctcttt caatcgctcg accagattct cttcacgata gttaataacc
     3541 tgccacgcgc cggcttttag cgcgctctgc gctttttgcg cggttcctac ggtgccgata
     3601 agtttcgcgc ccagagcttt tgcccactgg caggcaatca agccaacgcc gccagccgct
     3661 gcgtggaaca ggaactgttc atcgggttta atttcatagg ttttgcacag cagataataa
     3721 accgttaagc ctttcaggaa agatgctgca gcttgctcaa aagaaatagc cgcaggcaga
     3781 atcgccgctt tatccgcatt aatgttatgc acagagctgt aagcgcctaa cgccgactgc
     3841 gcatagacta cacgatcgcc tgccttaata tgctttacac cactgccgac tttactcacg
     3901 atgcctgccg cttcggtacc tgatccgctg ggtagtgatg gcggcgggta aaggccgctg
     3961 cggatatacg tgtcgataaa attgatgccg atggctttat tttcgacctg gatttcattc
     4021 tctgccggat cggcaggagt gaactctacg gcttgaagta cttccgggcc accgtgcttg
     4081 tgaaatttaa ttcgtgttgc catgtgtcct ccagaacgta tcgtcagggt ctgcttcata
     4141 tggtaaagtt tcgacccatt ctttatctcg gtaactccat tcactatggc aggaaataaa
     4201 cccttcaaca aacagcaggc tgaaccccgc gaacgcgatc cacaagttgc cgggctgaaa
     4261 gtgcctccgc actcgatcga agcggagcag tcggtgttgg gcggtttaat gctggataac
     4321 gaacgctggg acgatgtagc cgagcgtgtg gtggcagacg atttttacac ccgcccacac
     4381 cgccatatct ttactgaaat ggcgcgtttg caggaaagcg gtagtcctat cgatctgatt
     4441 acccttgcgg aatcgctgga acgccagggg caactcgata gcgtcggtgg ttttgcttat
     4501 ctggcagagc tgtcaaaaaa tacgccaagt gcggcgaaca tcagtgctta tgctgacatc
     4561 gtgcgtgaac gtgccgttgt ccgtgagatg atctcggttg cgaatgagat tgctgaagcc
     4621 ggttttgatc cgcaggggcg taccagcgaa gatctgctgg accttgctga atcccgcgtc
     4681 tttaaaattg ccgaaagtcg tgcaaacaaa gacgaagggc cgaagaacat cgccgatgtg
     4741 ctcgacgcaa ccgtggcgcg tattgagcag ttgtttcagc agccacacga tggcgttacc
     4801 ggagtaaaca ccggttatga cgatctcaac aaaaaaaccg ctggcttgca gccgtcggat
     4861 ttgatcatcg tcgccgcgcg tccgtcgatg ggtaaaacaa catttgcgat gaacctcgtc
     4921 gaaaacgcgg cgatgttgca ggataaacca gtacttatct tctcgctgga gatgccttca
     4981 gaacagatta tgatgcgttc tctggcgtcg ctgtcgcgcg ttgaccagac taaaatccgt
     5041 accgggcagc tcgatgatga agactgggcg cgcatttccg gcaccatggg tattttgctc
     5101 gaaaaacgca atatctatat cgatgactcc tccggcctga cgccaacgga agtgcgttcc
     5161 cgcgcacgcc gtattgcccg tgaacacggc ggcatcgggc ttatcatgat cgactacctg
     5221 caactgatgc gcgtaccggc gctttccgat aaccgtacgc tggaaattgc agaaatctct
     5281 cgctcgctga aagcactggc gaaagaactg aacgtgccgg tggtggcgct gtcccagttg
     5341 aaccgttctc tggaacaacg tgccgacaaa cgcccggtca actccgacct gcgtgaatct
     5401 ggctctatcg agcaggatgc ggacttgatc atgtttatct atcgtgatga ggtgtatcac
     5461 gaaaacagtg atttaaaagg catcgcggaa attattatcg gtaaacaacg taacggccca
     5521 atcgggacgg tacgcctgac ctttaacggt caatggtcgc gcttcgacaa ctatgcgggg
     5581 ccgcagtacg acgacgaata ataattattt tatgaattag gtaattaaag caaacactta
     5641 tcaaggaaca caaatgcaag cggcaactgt tgtgattaac cgccgcgctc tgcgacacaa
     5701 cctgcaacgt cttcgtgaac tggcccctgc cagtaaaatg gttgcggtgg tgaaagcgaa
     5761 cgcttatggt cacggtcttc ttgagaccgc gcgaacgctc cccgatgctg acgcctttgg
     5821 cgtagcccgt ctcgaagaag ctctgcgact gcgtgcgggg ggaatcacca aacctgtact
     5881 gttactcgaa ggcttttttg atgccagaga tctgccgacg atttctgcgc aacattttca
     5941 taccgccgtg cataacgaag aacagctggc tgcgctggaa gaggctagcc tggacgagcc
     6001 ggttaccgtc tggatgaaac tcgataccgg tatgcaccgt ctgggcgtaa ggccggaaca
     6061 ggctggggcg ttttatcatc gcctgacaca gtgcaaaaac gttcgtcagc cggtgaatat
     6121 cgtcagccat tttgcgcgcg cggatgaacc aaaatgtggc gcaaccgaga aacaactcgc
     6181 tatctttaat accttttgcg aaggcaaacc tggtcaacgt tccattgccg cgtcgggtgg
     6241 cattctgctg tggccacaat cgcattttga ctgggtgcgc ccgggcatca ttctttatgg
     6301 cgtctcgccg ctggaagatc gctccaccgg tgccgatttt ggctgtcagc cagtgatgtc
     6361 actaacctcc agcctgattg ccgtgcgtga gcataaagcc ggagagcctg ttggttatgg
     6421 tggaacctgg gtaagcgaac gtgatacccg tcttggcgta gtcgcgatgg gctatggcga
     6481 tggttatccg cgcgccgctc catccggtac gccagtgctg gtgaacggtc gcgaagtacc
     6541 gattgtcggg cgcgtggcga tggatatgat ctgcgtagac ttaggtccac aggcgcagga
     6601 caaagccggg gatccggtca ttttatgggg cgaaggtttg cccgtagaac gtatcgctga
     6661 aatgacaaaa gtgagcgctt acgaacttat tacgcgcctg acttcaaggg tcgcgatgaa
     6721 atacgtggat taatcgttct gtaatatttg attgtctgtg ccggatgcgg cgtgaatgcc
     6781 ttatccggcc aataaaatcc taaaaattca ataagttgat gttctttcat gctcttataa
     6841 aggtcgtgcc tctggcggat gttcgtttgt catgagtctc actctgttgc taattgccgt
     6901 tcgctcctga acatccactc gatcttcgcc ttcttccggt ttattgtgtt ttaaccacct
     6961 gcccgtaaac ctggagaacc atcgcgtgtt tcaaaaagtt gacgcctacg ctggcgaccc
     7021 gattcttacg cttatggagc gttttaaaga agaccctcgc agcgacaaag tgaatttaag
     7081 tatcggtctg tactacaacg aagacggaat tattccacaa ctgaaagccg tggcggaggc
     7141 ggaagcgcgc ctgaatgcgc agccccatgg cgcttcgctt tatttaccga tggaagggct
     7201 taacagctat cgccatgcca ttgcgccgct gctgtttggt gcggaccatc cggtactgca
     7261 acaacagcgc gtagcaacca ttcaaaccct tggcggctca ggggcattga aagtgggcgc
     7321 ggatttcctg aaacgctact tcccggaatc aggcgtctgg gtcagcgatc ctacctggga
     7381 aaaccacgta gcaatattcg ccggggctgg attcgaagtg agtacttacc cctggtatga
     7441 cgaagcgact aacagcgtgc gctttaatga cctgttggcg acgctgaaaa cattacctgc
     7501 ccgcagtatt gtgttgctgc atccatgttg ccacaaccca acaggtgccg atctcactaa
     7561 tgatcagtgg gatgcggtga ttaaaattct caaagcccgc gagcttatcc cattcctcga
     7621 tattgcctat caaggattta gtgccggtat ggaagaggat gcctacgcta ttcgcgccat
     7681 tgccagcgct ggattacccg ctctggtgag caattcgttc tcgaaaattt tctcccttta
     7741 cggcgagcgc gtcggcggac tttctgttct gtgtgaagat gccgaagccg ctggccgcgt
     7801 actggggcaa ttgaaagcaa cagttcgccg caactactcc agcccgccga atttgggtgc
     7861 gcaggtggtg gctgcagtgc tgaatgacga ggcattgaaa gccagctggc tggcggaagt
     7921 agaagagatg cgtactcgca ttctggcaat gcgtcaggaa ttggtgaagg tattaagcac
     7981 agagatgcca gaacgcaatt tcgattatct gcttaatcag cgcggcatgt tcagttatac
     8041 cggtttaagt gccgctcagg ttgaccgact acgtgaagaa tttggtgtct atctcatcgc
     8101 cagcggtcgc atgtgtgtcg ccgggttaaa tacggcaaat gtacaacgtg tggcaaaggc
     8161 gtttgctgcg gtgatgtaat gcaggaaagc aggctggagt tacccagcct gcagtgaaat
     8221 taaactgtcg tcgctttcac tatttctttg tagatgattt ttttgatgcc gttgttctac
     8281 gtgagagata ataaaacgtt gtcagttctt ttattgttaa gtttatccca attaactgga
     8341 attcctt
//
LOCUS       DADMHM010000174         8162 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.177, whole genome shotgun sequence.
ACCESSION   DADMHM010000174 DADMHM010000000
VERSION     DADMHM010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8162)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8162)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8162
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.177"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(134..210)
                     /locus_tag="JN125_003328"
     tRNA            complement(134..210)
                     /locus_tag="JN125_003328"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(174..176),aa:Asp,seq:gtc)
     gene            complement(343..1074)
                     /gene="dnaQ"
                     /locus_tag="JN125_003329"
     CDS             complement(343..1074)
                     /gene="dnaQ"
                     /locus_tag="JN125_003329"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706156.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HAY8872989.1"
                     /translation="MSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLT
                     GNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAF
                     DIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRT
                     LHGALLDAQILGEVYLAMTGGQTSMAFAMEGETQQQQGEATIQRIVRQASKLRVVFAT
                     DEELAAHEARLDLVEKKGGSCLWRA"
     gene            1139..1606
                     /gene="rnhA"
                     /locus_tag="JN125_003330"
     CDS             1139..1606
                     /gene="rnhA"
                     /locus_tag="JN125_003330"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HAY8872990.1"
                     /translation="MLKQVEIFTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTN
                     NRMELMAAIVALEALKEHCEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVD
                     LWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNPTLEDTGYQVEV"
     gene            complement(1603..2325)
                     /locus_tag="JN125_003331"
     CDS             complement(1603..2325)
                     /locus_tag="JN125_003331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308236.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HAY8872991.1"
                     /translation="MKPARVPQTVVAPDRWGDLPWGELYRKALERQLNPWFTKMYGFH
                     LLKIGNLSAEINCEACAVSHQVNVSAQGMPVQVQADPLHLPFADKSVDVCLLAHTLPW
                     CTDPHRLLRETDRVLIDDGWLVISGFNPISLMGLRKLVPVLRKTSPYNSRMFTLMRQL
                     DWLSLLNFEVLHASRFHVLPWNKHGGKLLNAHIPALGCLQLIVARKRTIPLTLNPMKQ
                     SKNKPRIRQAVGATRQCRKPQA"
     gene            2359..3114
                     /gene="gloB"
                     /locus_tag="JN125_003332"
     CDS             2359..3114
                     /gene="gloB"
                     /locus_tag="JN125_003332"
                     /EC_number="3.1.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacylglutathione hydrolase"
                     /protein_id="HAY8872992.1"
                     /translation="MNLNSIPAFDDNYIWVLNDEAGRCLIVDPGDAEPVLNAIAANNW
                     QPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQETQDKGTTQVVKDGETAFVLGHEF
                     SVIATPGHTLGHICYFSKPYLFCGDTLFSGGCGRLFEGTASQMYQSLNKLSALPDDTL
                     VCCAHEYTLSNMKFALSILPHDLSINDYYRKVKELRAKNQITLPVILKNERQINVFLR
                     TEDIDLINVINEETLLQQPEERFAWLRSKKDRF"
     gene            3186..4544
                     /gene="mltD"
                     /locus_tag="JN125_003333"
     CDS             3186..4544
                     /gene="mltD"
                     /locus_tag="JN125_003333"
                     /EC_number="4.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein transglycosylase D"
                     /protein_id="HAY8872993.1"
                     /translation="MKAKAILLASVLLVGCQSTGNVQQHAQSLSAAGQGEAAKFTSQA
                     RWMDDGTSIAPDGDLWAFIGDELKMGIPENDRIREQKQKYLRNKSYLHDVTLRAEPYM
                     YWIAGQVKKRNMPMELVLLPIVESAFDPHATSGANAAGIWQIIPSTGRNYGLKQTRNY
                     DARRDVVASTTAALNMMQRLNKMFDGDWLLTVAAYNSGEGRVMKAIKTNKARGKSTDF
                     WSLPLPQETKQYVPKMLALSDILKNSKRYGVRLPTTDESRALARVHLSSPVEMAKVAD
                     MAGISVSKLKTFNAGVKGSTLGASGPQYVMVPKKHADQLRDSLASGEIAAVQSTLVAD
                     NTPLNSRVYTVRSGDTLSSIASRLGVSTKDLQQWNKLRGSKLKPGQSLTIGAGSSAQR
                     LANNSDSITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTANLQPGDKLTLFVKNNNMP
                     DS"
     gene            complement(4593..5216)
                     /locus_tag="JN125_003334"
     CDS             complement(4593..5216)
                     /locus_tag="JN125_003334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HAY8872994.1"
                     /translation="MSGLPQGRPTFGAAQNVSAVVAYDLSAHMLDVVAQAAEARQLKN
                     ITTRQGYAASLPFADNAFDIVISRYSAHHWHDVGAALREVNRILKPGGRLIVMDVMSP
                     GHPVRDIWLQAVEALRDTSHVRNYASGAWLTLINEANLIVDNLITDKLPLEFSSWVVR
                     MRTPEALVDAIRIYQQSASTEVRTYFSLQTDGSFTSDIIMVEAHKAA"
     gene            complement(5220..6020)
                     /locus_tag="JN125_003335"
     CDS             complement(5220..6020)
                     /locus_tag="JN125_003335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HAY8872995.1"
                     /translation="MRKNTYAMRYVAGQPAERILPPGSFASIGQALPPGEPLSTEERI
                     RILVWNIYKQQRAEWLSVLKNYGKDAHLVLLQEAQTTPELVQFATANYLAADQVPAFV
                     LPQHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNIHAVNF
                     SLGVDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRRRMNALYRFAREMSLRQVRFTD
                     DQRRRAFGRPLDFVFYRGLNVSEASVLVTRASDHNPLLVEFSPGKPDK"
     gene            6261..7175
                     /locus_tag="JN125_003336"
     CDS             6261..7175
                     /locus_tag="JN125_003336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY8872996.1"
                     /translation="MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMK
                     LGVSLLNRTTRQLSLTEEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATP
                     VVLHFLMPLIKPFRERYPEITLSLVSSETIINLIERKVDVAIRAGTLTDSSLRARPLF
                     NSYRKIIASPDYISRYGKPETIDDLKQHVCLGFTEPASLNTWPIACSDGQLHEVKYGL
                     SSNSGETLKQLCLSGNGIACLSDYMIDREIARGELVELMADKVLPVEMPFSAVYYSDR
                     AVSTRIRAFIDFLSEHVKTAPGGAVREA"
     gene            complement(7172..7975)
                     /gene="dkgB"
                     /locus_tag="JN125_003337"
     CDS             complement(7172..7975)
                     /gene="dkgB"
                     /locus_tag="JN125_003337"
                     /EC_number="1.1.1.346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,5-didehydrogluconate reductase DkgB"
                     /protein_id="HAY8872997.1"
                     /translation="MAIPAFGLGTFRLKDDVVISSVKTALELGYRAIDTAQIYDNEAA
                     VGQAIAESGVSRHELYITTKIWIENLSKDKLIPSLKESLQKLRTDYVDLTLIHWPSPN
                     DEVSVEEFMQALLEAKKQGLTREIGISNFTIPLMEKAIAAVGAENIATNQIELSPYLQ
                     NRKVVAWAKQHGIHITSYMTLAYGKALKDEVIARIAAKHNATPAQVILAWAMGEGYSV
                     IPSSTKRKNLESNLKAQNLQLDAEDKKAIAALDCNDRLVSPEGLAPEWD"
BASE COUNT         2189 a         1959 c         1979 g         2035 t
ORIGIN      
        1 gtctaccata tgtgattaac acatttacag cataacaaaa ccatagaccg aagaaatagc
       61 gagatttaaa tgcaaaaaaa accgcagaat taaaaatctt gcggttctct gaactcattt
      121 tcatgagtga atttggcgga acggacggga ctcgaacccg cgcccccctg cgtgacaggc
      181 aggtattcta accgactgaa ctaccgctcc gcgttgtgtt ccgttggtaa cgaggcgaat
      241 attacggatt gcctcaccct tcgtcaacgg tttttctcat cttttgaatc gtttgctgca
      301 aaaatcgccc aagccgctat ttttagcgcc ttttacaggt atttatgccc gccagaggca
      361 gcttccgccc ttcttctcca ccagatcaag acgggcttca tgagctgcaa gctcttcatc
      421 tgtcgcaaaa acaacgcgta acttacttgc ctgacgtaca atgcgctgaa ttgttgcttc
      481 accttgttgc tgctgtgtct ctccttccat cgcaaaagcc atcgacgttt gaccaccggt
      541 catcgccaga taaacttccc caaggatctg tgcatcgagt aatgccccgt gtagcgttcg
      601 tttactgtta tctatttcgt agcgggcaca taacgcatcg aggctgttgc gcttaccagg
      661 aaacattttc ctcgccaccg caaggctatc ggtgacctta cagaaggtat tggtcttcgg
      721 aatatcgcgc ttaagcaacg aaaactcgta gtccataaag ccgatatcga acgctgcgtt
      781 atggatcacc aactccgcgc cgcggatata gtccatgaac tcatcggcta cttcggcaaa
      841 cgtgggctta tcgagcaaaa attcatcggc aataccatgt acgccaaagg cttccggatc
      901 caccagccga tcgggtttga gataaacatg gaagttattg cccgtcaggc gacggttcac
      961 cacttcaacg gcaccaatct caatgatctt gtggccttca tagtgcgcac caatctggtt
     1021 cataccggtg gtttcggtat cgagaacgat ctggcgtgta attgcagtgc tcatagcggt
     1081 catttatgtc agacttatcg ttttacagtt cgattcaatt acaggaagtc taccagagat
     1141 gcttaaacag gtagaaattt tcaccgatgg ttcgtgtctg ggcaatccag gacctggggg
     1201 ttacggcgct attttacgct atcgcggacg cgagaaaacc tttagcgcag gctacacccg
     1261 caccaccaac aaccgtatgg agttgatggc cgctattgtc gcgctggagg cgttaaaaga
     1321 acattgcgaa gtcattttga gtaccgacag ccagtatgtc cgccagggta tcacccagtg
     1381 gatccataac tggaaaaaac gtggctggaa aaccgcagac aaaaaaccag taaaaaatgt
     1441 cgatctctgg caacgtcttg atgctgccct agggcaacat caaatcaaat gggaatgggt
     1501 taaaggccat gccggacacc cggaaaacga acgctgtgat gaactggctc gtgctgcggc
     1561 aatgaatccc acactggaag atacgggcta ccaagtcgaa gtttaagctt gtggtttacg
     1621 acattgccgg gtggctccaa ccgcttggcg aattcgtggc ttgtttttac tctgtttcat
     1681 cgggtttagc gttaaaggaa tagtccgttt ccgggcaaca ataagttgta agcaaccaag
     1741 cgcaggaata tgcgcattca atagttttcc tccgtgtttg ttccacggga gaacgtggaa
     1801 acggctggcg tgcagcactt caaaattcaa caaagagagc cagtccagtt gccgcatcag
     1861 agtaaacatc cggctgttat agggcgaggt ttttcgcaat accggcacaa gtttgcgtaa
     1921 tcccattaaa ctaatgggat tgaagccact aatcaccagc cagccatcat caatcaatac
     1981 ccgatcggtt tcacgcaata aacgatgcgg atcggtgcac cacggcaatg tatgtgccag
     2041 tagacaaaca tcaacggatt tatcggcaaa aggaagatga agtggatccg cctgcacctg
     2101 gacgggcatt ccttgcgcag aaacattcac ttgatgagaa accgcgcacg cttcgcaatt
     2161 gatttctgcg cttaaattgc caatcttaag cagatgaaaa ccatacattt tagtgaacca
     2221 cgggttgagc tggcgctcca gcgccttgcg ataaagctct ccccagggca aatcgcccca
     2281 gcgatcagga gccacgacag tttgagggac tcttgccggt ttcatcacaa ccttccgttt
     2341 cacactaaga ggtaatctat gaatcttaac agtattcccg cctttgatga caattacatc
     2401 tgggttttga atgatgaagc aggtcgctgc ctgattgtcg atcccggaga cgcagagcca
     2461 gtattaaacg ccattgccgc caataactgg caaccggagg ccatatttct cacccaccat
     2521 catcacgatc acgttggcgg cgtaaaagaa ctggtggaaa agtttccgca aattgtggtg
     2581 tatggtccac aagagacaca agataaggga acaacacagg tagtcaaaga tggcgaaact
     2641 gccttcgttt tggggcatga atttagtgta attgccacac cgggtcacac tttaggacat
     2701 atctgttact tcagtaaacc ttatctattt tgcggcgaca cgctgttttc tggtgggtgt
     2761 ggtaggttgt ttgaagggac agcatcacaa atgtatcaat cacttaataa gttaagtgcg
     2821 ttacctgacg atacattggt atgttgtgct catgaatata cgttatcaaa tatgaagttt
     2881 gctttgagta ttcttccgca cgatttgtcc ataaatgatt attatcgtaa agttaaggag
     2941 ttacgggcaa aaaatcaaat aacactaccc gtaattctga aaaatgagcg gcaaattaat
     3001 gtttttttaa gaacggaaga tattgattta attaatgtaa ttaatgaaga aacattattg
     3061 caacaacctg aagagcgttt tgcatggtta aggtcaaaga aagataggtt ctgataaaac
     3121 tttcttgtca tcggctccgt tcgccgttat gatcggtcgt cttttaagca actattgaca
     3181 cacacatgaa ggcaaaagcg atattactcg cctctgtcct gctcgtgggt tgccagagta
     3241 ccggcaacgt tcaacagcac gcacagagcc tttctgcagc tggtcaaggg gaagcagcaa
     3301 agtttacaag tcaggcacga tggatggacg atgggacgtc tatcgcgcca gatggtgact
     3361 tgtgggcttt cattggcgac gagctaaaga tgggaattcc ggaaaatgac cggattcgcg
     3421 aacagaaaca gaaatattta cgcaataaga gctatctcca cgatgtaact ttacgggcag
     3481 agccgtatat gtactggata gcagggcaag ttaaaaaacg taacatgcct atggaactgg
     3541 tactactacc catagtggag agcgcttttg atcctcacgc aacgtctggc gccaatgccg
     3601 caggcatctg gcagatcatt ccgagcacgg ggcgcaatta tggtttgaaa cagacccgca
     3661 attatgacgc gcgtcgcgat gttgttgctt caacaactgc cgcgctgaac atgatgcagc
     3721 gtctgaacaa gatgtttgac ggcgactggc ttctgaccgt agcggcttat aacagcggcg
     3781 aaggtcgggt catgaaggca attaaaacga acaaagcgcg tgggaaatcc acggacttct
     3841 ggtcgttacc gttgccgcag gaaacgaagc agtacgtgcc taaaatgctg gcattgagtg
     3901 atattctcaa aaacagcaag cgttatggcg tacgtctgcc aacgaccgat gaaagccgtg
     3961 ctctggcgcg tgtgcacctg agcagcccgg ttgaaatggc gaaggttgca gatatggcgg
     4021 ggatttccgt cagcaagctg aagacattca acgctggcgt aaaaggctcc acgctgggcg
     4081 caagtggccc gcagtacgtg atggtgccaa agaagcatgc agatcaactg cgtgattctc
     4141 tcgcttcagg cgaaattgct gctgtacagt cgacgctggt tgccgacaat acgccgctta
     4201 acagccgtgt ttacaccgta cgctctggcg acacgctttc aagcatcgct tcacgtctcg
     4261 gcgtaagcac caaagatttg cagcagtgga acaaactgcg cggatctaag ctgaagccag
     4321 gccaaagttt gacgattggt gcaggcagta gcgcacagcg gttggcaaac aacagcgata
     4381 gcattacgta tcgtgtgcgc aaaggcgatt cgctttcaag cattgctaaa cgccacggcg
     4441 tgaacatcaa agatgtgatg cgctggaaca gcgacactgc gaatctgcaa ccaggcgata
     4501 agctgacgtt gtttgtgaaa aacaacaaca tgccagattc ctgacaaacc agataataaa
     4561 aaaggcaccg attcccccgg tgcctttttt atttatgccg ctttatgtgc ttctaccatg
     4621 atgatatcac tggtgaaaga gccatcagtc tgcaaggaaa aatacgttct cacctctgtc
     4681 gatgcgctct gttggtaaat gcgaatagcg tctactaacg cttctggcgt acgcattctc
     4741 acgacccatg aagaaaattc cagcggtaac ttatctgtaa ttaaattatc aactatcaga
     4801 ttggcttcat tgattaacgt caaccacgca ccgctggcgt agtttcgtac gtgagaggta
     4861 tcgcgtaatg cttctaccgc ctgtaaccag atgtcgcgca ctgggtgacc cggagacatt
     4921 acatccatca caatcagcct accgccaggt ttcaatatcc tattcacttc tcgcagtgct
     4981 gcaccaacat catgccagtg atgggcagaa taacggctga taacaatatc aaatgcgtta
     5041 tcggcaaatg gcagacttgc ggcatatccc tggcgggtgg tgatattttt cagttgccgg
     5101 gcttcggcag cttgtgccac gacatccagc atgtgggccg ataagtcata cgccaccacc
     5161 gcgctcacgt tttgcgcagc gccaaacgtt ggtctgccct gtggcagacc tgacatacct
     5221 tatttatcag gcttgccggg actgaattca acgagtagcg gattgtgatc ggaagcgcgc
     5281 gtaaccagta cagaagcttc actgacgttc agaccacggt agaaaacaaa atcgagcggg
     5341 cgaccaaacg cccgacggcg ctgatcatcg gtaaaacgca cctggcgcag cgacatttcc
     5401 cgcgcaaagc gatataacgc gttcatcctt ctacggctcc aggcattgaa atctcccgcc
     5461 ataatgaccg ggccgctgtg gtgagctatc tgatcaccaa taggaagtaa ctgcttacta
     5521 tagacatcca cgcccagact gaagttgacg gcgtgtatat taaccaccat caacaggcgg
     5581 gtgtcaggta atggatagac cgtcaccagt gccgacttcg ccagacgcaa aatgggttct
     5641 cgttcacgta acgggcagca atacactgga tgtgccgccg aaagggtcat tacgccagaa
     5701 ggatgttgtg gcagcacgaa agcgggtacc tgatcggcgg caagatagtt agcggtcgca
     5761 aactgtacta actctggcgt tgtctgcgct tcctgcaata acaccagatg tgcatctttg
     5821 ccgtagttct ttaataccga caaccattca gcgcgttgct gtttgtatat gttccacacc
     5881 aggatccgaa tacgctcttc ggtacttaac ggttccccag gtggtaatgc ctggccgatg
     5941 ctcgcaaaag accccggcgg taagatcctt tccgcaggtt gtccggcaac atagcgcatg
     6001 gcataggtgt tttttcgcac ttttgacttt gaaacctcta ttacgtcaac ccttccgcac
     6061 tcgggagggt tctactatta tagggatttt agctcactct ttcaacgagc aattgtatat
     6121 tgttatgtaa gcaagtgctt acaccggtca gaattttgct cattatggag aacattaaat
     6181 cgcatgacat atcacgcatc ctgatggttt aatgacaaat aaattcaaaa tatctcttct
     6241 attttgcaac aggagcaaaa atgaaagcca cgtcggaaga actcgccatt tttgtttcgg
     6301 tcgtcgaaag cggcagcttt agccgggcag cggaacaatt agggcaagca aactcagcgg
     6361 taagccgggc ggtgaaaaag ctggagatga aacttggcgt tagcctgctt aatcggacca
     6421 cgcgacaact tagcctgacg gaagaaggcg agcgttattt tcgtcgcgta cagtcaattt
     6481 tgcaggagat ggcagcggca gaatcagaaa ttatggagac gcgtaataca ccgcgtggac
     6541 tgttacggat cgatgccgca actccagtgg tgctgcactt tctgatgccg ttaattaagc
     6601 ctttccgtga acgctatccg gaaatcactt tgtcgctagt ctcctccgaa acgattatta
     6661 atttgatcga aagaaaagtg gatgtcgcga tacgcgctgg tacgttaacg gattccagct
     6721 tacgtgctag gccgttattt aacagttatc gaaaaattat cgcctccccc gattatattt
     6781 cccgctacgg gaagccagaa acgatcgacg atttaaagca acatgtttgc ctgggattca
     6841 ctgaacccgc ttccctcaat acctggccga tagcctgtag tgatggacaa ttacatgagg
     6901 tgaaatacgg tttgtcatcc aatagtgggg aaacactgaa acagctttgc ctgagtggca
     6961 acgggattgc gtgtttgtcc gactacatga tcgacagaga aatcgctcgc ggagaattgg
     7021 tggagttaat ggcagataaa gtgttgccag tggaaatgcc attcagtgcc gtctattaca
     7081 gcgaccgtgc ggtaagtacg cgcatccggg cttttatcga tttccttagc gagcatgtaa
     7141 aaacagctcc cggaggagct gtcagagagg cttaatccca ttcaggagcc agaccttccg
     7201 ggctaaccag gcggtcgttg caatccagtg cggcgatcgc ttttttatct tcggcatcaa
     7261 gctgtaaatt ttgtgcctta agattacttt ccaggttttt acgtttagta gaagaaggaa
     7321 ttactgagta accttccccc atagcccacg ccagaatcac ttgtgccgga gtcgcattgt
     7381 gtttagctgc gatacgagca ataacctcat ctttcagggc cttaccatac gccagcgtca
     7441 tataggaggt aatatggatg ccgtgctgtt tagcccaggc aaccacttta cggttttgca
     7501 gataaggaga gagttcaatc tggttagtag cgatgttttc agcgccaaca gcagcaatcg
     7561 ccttttccat caatgggatc gtgaagttgg aaataccgat ctcacgcgtc agcccttgtt
     7621 ttttggcttc cagcagcgcc tgcataaact cttcaacaga gacttcatcg tttggtgacg
     7681 gccagtggat tagcgtcaga tcaacataat cggtacgcaa tttttgcagg ctctctttca
     7741 gacttgggat caatttgtct ttgctgagat tttcaatcca gattttagtg gtgatgtaga
     7801 gttcatgacg tgacacgcca ctttctgcaa tcgcctgacc tactgcggct tcgttatcat
     7861 agatttgtgc ggtatcaatt gcgcgataac caagttcaag cgccgttttc acagatgaaa
     7921 taacaacgtc gtctttcaga cggaaagtac ctaaaccaaa tgcagggata gccataatat
     7981 gcctctttta atgctatttt cgttaactga ggtgattatg ggcttcagac tgttgaggaa
     8041 aaaaaagcgt aaaatgcaga ggatttttgc gattctggca ataatagata tacagacgaa
     8101 aaaaaacctc gagcgttaac tcgaggcttc ttaataagtg gcggaacgga cgggactcga
     8161 ac
//
LOCUS       DADMHM010000175         8068 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.178, whole genome shotgun sequence.
ACCESSION   DADMHM010000175 DADMHM010000000
VERSION     DADMHM010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8068)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8068)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8068
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.178"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            189..1604
                     /gene="tnaA"
                     /locus_tag="JN125_003338"
     CDS             189..1604
                     /gene="tnaA"
                     /locus_tag="JN125_003338"
                     /EC_number="4.1.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709490.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophanase"
                     /protein_id="HAY8872998.1"
                     /translation="MENFKHLPEPFRIRVIEPVKRTTRAYREEAIIKSGMNPFLLDRE
                     DVFIDLLTDSGTGAVTQSMQAAMMRGDEAYSGSRSYYALAESVKNIFGYQYTIPTHQG
                     RGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFD
                     TGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAK
                     KYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPM
                     GGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYR
                     IAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIR
                     AVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAANIK
                     GLTFTYEPKVLRHFTAKLKEV"
     gene            1695..2936
                     /gene="tnaB"
                     /locus_tag="JN125_003339"
     CDS             1695..2936
                     /gene="tnaB"
                     /locus_tag="JN125_003339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low affinity tryptophan permease TnaB"
                     /protein_id="HAY8872999.1"
                     /translation="MTDQAEKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAF
                     ILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNIISGITVAFVLYILTY
                     AYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLKI
                     ISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIIC
                     YGKRKDKLIKSVVFGSLLVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTK
                     QHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNSHGGRFKTVLLTFLPPAL
                     LYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVIL
                     FGITVILCWFGNVFNVLPKFG"
     gene            3068..4243
                     /gene="mdtL"
                     /locus_tag="JN125_003340"
     CDS             3068..4243
                     /gene="mdtL"
                     /locus_tag="JN125_003340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtL"
                     /protein_id="HAY8873000.1"
                     /translation="MSRFLICSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAF
                     SVYLAGMAAAMLFAGKVADRSGRKPVAIPGAALFIIASVFCSLAETSTLFLAGRFLQG
                     LGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLF
                     WAMAMMGIAVLMLSLFILKETRPASPAASDKPRENSESLLNRFFLSRVVITTLSVSVI
                     LTFVNTSPVLLMEIMGFERGEYATIMALTAGVSMTVSFSTPFALGIFKPRTLMITSQV
                     LFLAAGITLAVSPSHAVSLFGITLICAGFSVGFGVAMSQALGPFSLRAGVASSTLGIA
                     QVCGSSLWIWLAAVVGIGAWNMLIGILIACSIVSLLLIMFVAPGRPVAAHEEIHHHA"
     gene            4218..5177
                     /gene="yidZ"
                     /locus_tag="JN125_003341"
     CDS             4218..5177
                     /gene="yidZ"
                     /locus_tag="JN125_003341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator YidZ"
                     /protein_id="HAY8873001.1"
                     /translation="MKKSITTLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLA
                     KLRAWFDDPLFVNSPLGLSPTPLMVSMEQNLAEWMQMSNLLLDKPHHQTPRGLKFELA
                     AESPLMMIMLNALSKRIYQRYPQATIKLRNWDYDSLDAITRGEVDIGFSGRESHPRSR
                     ELLSSLPLAIDYEVLFSDVPCVWLRKDHPALHETWNLDTFLRYPHISICWEQSDTWAL
                     DNVLQELGRERTIAMSLPEFEQSLFMAAQPDNLLLATAPRYCQYYNQLHQLPLVALPL
                     PFDESQQKKLEVPFTLLWHKRNSHNPKIVWLRETIKNLYASMA"
     gene            5334..6083
                     /locus_tag="JN125_003342"
     CDS             5334..6083
                     /locus_tag="JN125_003342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709485.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873002.1"
                     /translation="MAAHFARGILTEGHLISVRLPSQCHQEARNIPPHRQSRFLASRG
                     LLAELMFMLYGIGELPEIVTLPKGKPVFSDKNLPSFSISYAGNMVGVALTTEGECGLD
                     MELQRATRGFHSPHAPDNHTFSSNESLWISKQNDPNEARAQLITLRRSVLKLTGDVLN
                     DDPRDLQLLPIAGRLKCAHVNHVEALCDAEDVLVWSVAVTPAIEKLSVWELDGKHSWK
                     SLPDIHSRANNPTSRMMRFAQLSTVKSFSPN"
     gene            6105..6671
                     /gene="yieF"
                     /locus_tag="JN125_003343"
     CDS             6105..6671
                     /gene="yieF"
                     /locus_tag="JN125_003343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent chromate oxidoreductase YieF"
                     /protein_id="HAY8873003.1"
                     /translation="MSEKLQVVTLLGSLRKGSFNGMVARTLPKIAPASMEVNALPSIA
                     DIPLYDADVQQEEGFPATVEALAEQIRQADGVVIVTPEYNYSVPGVLKNAIDWLSRLP
                     DQPLAGKPVLIQTSSMGVIGGARCQYHLRQILVFLDAMVMNKPEFMGGVIQNKVDRQT
                     GEVIDQGTLDHLTGQLTAFGEFIQRVKI"
     gene            complement(6725..8062)
                     /locus_tag="JN125_003344"
     CDS             complement(6725..8062)
                     /locus_tag="JN125_003344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HAY8873004.1"
                     /translation="MSQQHTTQASGQGMLERVFKLREHGTTARTEVIAGFTTFLTMVY
                     IVFVNPQILGVAGMDTSAVFVTTCLIAAFGSIMMGLFANLPVALAPAMGLNAFFAFVV
                     VQAMGLPWQIGMGAIFWGAVGLLLLTIFRVRYWMIANIPVSLRVGITSGIGLFIGMMG
                     LKNAGVIVANSETLVSIGNLTSHSVLLGILGFFIIAILASRNIHAAVLVSIVVTTLLG
                     WMLGDVHYNGIVSAPPSVMTVVGHVDLAGSFNLGLAGVIFSFMLVNLFDSSGTLIGVT
                     DKAGLADEKGKFPRMKQALYVDSISSVTGSFIGTSSVTAYIESSSGVSVGGRTGLTAV
                     VVGLLFLLVIFLSPLAGMVLGYAAAGALIYVGVLMTSSLARVNWQDLTESVPAFITAV
                     MMPFSFSITEGIALGFISYCVMNIGTGRLRDLSPCVIIVALLFILKIVFIDAH"
BASE COUNT         1974 a         2030 c         2018 g         2046 t
ORIGIN      
        1 ccgattagat tcaatgtgaa cgattagttt gctatatctt aattttgcct tttgcaaagg
       61 ccatctctcg tttatttact tattttagta aatgatggtg cttgtatata tacatggcga
      121 attaatggat attgcagatg taatattcac agggatcact gtaattaaaa taaatgaagg
      181 attatgtaat ggaaaacttt aaacatctcc ctgaaccgtt ccgcattcgt gttattgagc
      241 cagtaaaacg tactactcgc gcttatcgtg aagaagcaat tattaaatcc ggtatgaacc
      301 cgttcctgct ggatcgcgaa gatgtgttta tcgatttact gaccgacagc ggcaccgggg
      361 cggtaaccca aagtatgcag gcagcgatga tgcgcggcga cgaagcctac agcggcagcc
      421 gcagctacta tgcgttagcc gagtcagtga aaaatatctt tggttatcaa tatactattc
      481 cgactcacca gggccgtggc gcagagcaaa tctatattcc ggtactgatt aaaaaacgcg
      541 agcaggaaaa aggcctggat cgcagcaaaa tggtggcatt ctctaactat ttctttgata
      601 ccacgcaggg ccatagccag attaacggct gtaccgtgcg taacgtctat atcaaagaag
      661 ccttcgatac gggcgtgcgt tacgacttta aaggcaactt tgacctcgaa ggattagaac
      721 gcggtattga agaagttggc ccgaataacg tgccgtatat cgttgcaacc atcaccagta
      781 actctgcagg tggtcagccg gtttcactgg caaacttaaa agcgatgtac agcatcgcga
      841 agaaatacga tattccggtg gtaatggact ccgcacgctt tgctgaaaac gcctatttca
      901 tcaagcagcg tgaagcagaa tacaaagact ggaccatcga gcagatcacc cgcgaaacct
      961 acaaatatgc cgatatgctg gcgatgtccg ccaagaaaga tgcgatggtg ccgatgggcg
     1021 gcttgctgtg catgaaagac gacagcttct ttgatgtgta caccgagtgc agaacccttt
     1081 gcgtggtgca ggaaggcttc ccgacatatg gcggcctgga aggcggcgcg atggagcgtc
     1141 tggcggtagg tctgtatgac ggcatgaatc tcgactggct ggcttatcgt atcgcgcagg
     1201 tacagtatct ggtcgatggt ctggaagaga ttggcgttgt ctgccagcag gcgggcggtc
     1261 acgcggcatt cgttgatgcc ggtaaactgc tgccgcatat cccggcagac cagttcccgg
     1321 cacaggcgct ggcgtgcgag ctgtataaag tcgccggtat ccgtgcggta gaaattggct
     1381 ctttcctgtt aggccgcgat ccgaaaaccg gtaaacaact gccatgcccg gctgaactgc
     1441 tgcgtttaac cattccgcgc gcaacatata ctcaaacaca tatggacttc attattgaag
     1501 cctttaaaca tgtgaaagag aacgcggcga atattaaagg attaaccttt acctacgaac
     1561 caaaagtatt gcgtcacttc accgcaaaac tgaaagaagt ttaattaata ctacagagtg
     1621 gctataagga tgttagccac tctcttaccc tacatcctca ataacaaaaa tagccttcct
     1681 ctaaaggtgg catcatgact gatcaagctg aaaaaaagca ctctgcattt tggggtgtta
     1741 tggttatagc aggtacagta attggtggag gtatgtttgc tttacctgtt gatcttgccg
     1801 gtgcctggtt tttctggggt gcctttatcc ttatcattgc ctggttttca atgcttcatt
     1861 ccgggttatt gttattagaa gcaaatttaa attatcctgt cggctccagt tttaacacca
     1921 tcaccaaaga tttaatcggt aacacctgga acattatcag cggtattacc gttgccttcg
     1981 ttctctatat cctcacttat gcctatatct ctgctaatgg tgcgatcatt agtgaaacga
     2041 tatcaatgaa tttgggctat cacgctaatc cacgtattgt cgggatctgc acagccattt
     2101 tcgttgccag cgtattgtgg ataagttcgt tagccgccag tcgcattacc tcattgttcc
     2161 tcgggctgaa gattatctcc tttgtgatcg tgtttggttc tttcttcttc caggtcgatt
     2221 actccatcct gcgcgatgcc accagcacca ctgcgggaac gtcttacttc ccgtatatct
     2281 ttatggcttt gccggtgtgt ctggcgtcat ttggtttcca cggcaatatt cccagcctga
     2341 ttatttgcta tggaaaacgc aaagataagt taatcaaaag cgtggtattt ggttcgctgc
     2401 tggtgattta tctcttctgg ctctattgca cgatggggaa tattccgcgc gaaagcttta
     2461 aggcgataat ctcctcaggc ggcaacgttg attcgctggt gaaatcgttc ctcggcacca
     2521 aacagcacgg cattatcgag ttttgcctgc tggtgttctc taacttagct gttgccagtt
     2581 cgttctttgg tgtcacgctg gggttgttcg attatctggc ggacctgttt aagattgata
     2641 actcccacgg cgggcgtttc aaaaccgtgc tgttaacctt cctgccacct gcgttgttgt
     2701 atctgatctt cccgaacggc tttatttacg ggatcggcgg tgccgggctg tgcgccacca
     2761 tctgggcggt cattattccc gcagtgcttg caatcaaagc tcgcaagaag tttcccaatc
     2821 agatgttcac ggtctggggc ggcaatctta ttccggcgat tgtcattctc tttggtataa
     2881 ccgtgatttt gtgctggttc ggcaacgtct ttaacgtgtt acctaaattt ggctaaatcc
     2941 ttcaagaagc cagccattcg ctggcttctt gcctctcagg aaatcactta tgtccaaatg
     3001 gcaactcgcc tgatcctcct tcaccacgta tgctttgcgt caccttacta tcaggacgct
     3061 ttagcccatg tcccgctttt tgatttgtag ttttgcccta gttttacttt atcccgccgg
     3121 gattgatatg tacctcgttg gtttaccgcg catcgccgcc gatctcaatg ccagcgaagc
     3181 gcagttgcat attgcgttct ccgtatatct ggcggggatg gcagctgcga tgttatttgc
     3241 cggtaaagtg gccgatcgtt cagggagaaa gccggtcgcc atacccggcg cggcgctatt
     3301 tattattgcc tcggtgttct gttcactggc tgaaaccagc acgttatttc ttgcaggccg
     3361 atttctacag gggttgggcg caggctgttg ttacgtagtg gcgttcgcca ttttgcgcga
     3421 cacgctggat gatcgacgtc gggctaaagt gctgtcatta ctcaacggta ttacctgcat
     3481 cattccggtg ttagcgccag tgctcggaca tctgattatg cttaaattcc cgtggcagag
     3541 tctgttctgg gcgatggcaa tgatgggcat cgcggtactg atgttgtctt tgtttatttt
     3601 aaaagaaacg cgcccagcgt cccccgctgc ttcggacaaa ccacgagaaa atagcgagtc
     3661 gctgcttaat cggtttttcc tcagccgtgt tgttatcacc accctcagcg tttcggtgat
     3721 cctcactttc gtcaatacat cgccggtatt gctgatggaa atcatgggtt ttgagcgcgg
     3781 agaatacgcc accattatgg cgttgaccgc tggcgtcagc atgaccgttt cattctccac
     3841 gccatttgcg ctgggaattt ttaagccacg tacgttgatg atcacctcgc aggtgttatt
     3901 ccttgctgcg gggatcaccc ttgccgtttc accttcccat gcggtttctc tgtttggtat
     3961 cacactgatt tgcgccggtt tctcggtagg ttttggcgta gcgatgagtc aggcgttagg
     4021 accattttca ttacgcgcgg gcgtagccag ctcgacctta ggtattgcgc aggtttgcgg
     4081 ttcgtcactg tggatttggc tggcagcggt ggttggtatc ggcgcatgga atatgctgat
     4141 cgggattctg attgcctgta gcatagtgag cctgttgctg attatgttcg tcgcgcctgg
     4201 acgccccgtt gccgctcatg aagaaatcca tcaccacgct tgatctcaat ctgctgctct
     4261 gtctgcaact gctgatgcag gagcgcagcg tgaccaaagc ggcgaagcgg atgaacgtga
     4321 ccccttcagc ggtgagtaag tcgctggcaa agttaagagc gtggtttgac gacccgctct
     4381 ttgtgaactc accgctgggg ctgtcgccca caccgctaat ggtcagcatg gagcaaaatc
     4441 tggcggaatg gatgcaaatg agcaatctgc tgctggataa accgcaccac cagacaccgc
     4501 gcggcctgaa gtttgagttg gcggcggaat cgccgctgat gatgatcatg cttaatgcgc
     4561 tgtcgaaacg gatctaccaa cgttacccgc aggcgaccat caaactacgt aactgggatt
     4621 acgattcctt agatgccatt actcgtggtg aagtggatat tggtttttcc ggtcgcgaaa
     4681 gccatcctcg ctcgcgggag ctgttaagct cgctaccgtt agccattgat tatgaagtgc
     4741 tgtttagtga tgtaccctgc gtctggttac gcaaagatca tccggcactg catgaaacgt
     4801 ggaatctgga caccttttta cgttatccgc atatcagcat ttgctgggaa cagagcgaca
     4861 cctgggcgct ggacaatgtg ttacaggagc tggggcgcga acgcacgatt gctatgagcc
     4921 tgccggaatt tgagcagtca ctgtttatgg cagcgcaacc cgacaatctg ctactggcga
     4981 ccgcgccgcg ctactgtcag tactacaatc aactccatca actgccgttg gttgctcttc
     5041 ctctcccgtt tgacgaaagc cagcaaaaaa agctggaagt tccttttacc ctgctgtggc
     5101 ataaacggaa cagccataat ccgaagatcg tctggttacg ggaaaccatt aaaaaccttt
     5161 acgcgtcgat ggcataaccg aatcgtatga aacgcgaccc aatttcacaa taaaatgtaa
     5221 aaaagttgta ataagcttgt ctgaatcgaa cttttagccg ctttagtctg tccatcattc
     5281 cagtaaatga ttactcttat attcataatg gaccattaag catggagcga aaaatggcgg
     5341 ctcactttgc ccgagggatt ttaacggaag gacatctgat ttctgttcgt ctcccctccc
     5401 agtgtcatca agaagcccga aacattcccc ctcatcgtca aagccgtttt ctggcgtcca
     5461 gaggtttact cgcagaactg atgttcatgc tgtatggcat tggcgaattg ccggaaatcg
     5521 tcaccctgcc gaaaggtaaa ccggttttca gtgataaaaa tttgccttcg ttttctattt
     5581 cctatgccgg gaatatggtt ggcgtggcgt taacaaccga aggtgaatgt ggcctcgata
     5641 tggaactaca gcgtgcgacg cgcgggtttc atagcccaca cgcgcccgat aaccacacct
     5701 tttccagcaa tgaatcgcta tggatcagta aacaaaacga tcctaacgaa gcgcgggcgc
     5761 agctcatcac gctgcgccga agcgtgctaa aactaaccgg tgatgttttg aatgacgatc
     5821 cgcgcgatct gcagctgctg cccattgccg gacgcctgaa atgtgctcat gtaaatcatg
     5881 tagaagcgtt atgcgacgcg gaggacgtgc tggtatggtc cgtggcggtc acgcccgcga
     5941 ttgaaaagct cagtgtctgg gagttagatg gcaaacacag ctggaaaagc ctgccggata
     6001 ttcacagccg cgccaacaat cctaccagcc ggatgatgcg ttttgcccag ctctctaccg
     6061 tgaagtcttt ttcgccaaat tgatagacaa ccacaggagt cattatgtct gaaaaattgc
     6121 aggtggttac gttactgggg agcctgcgca aaggctcatt taatggcatg gttgcacgta
     6181 ccctgccgaa aattgctccg gcgagcatgg aagtcaatgc gttaccttcc attgccgaca
     6241 ttcccctgta tgacgctgac gtacagcagg aagaaggttt tccagcaacg gttgaagctc
     6301 tggcggaaca gatccgtcag gctgacggtg tggtgatcgt cacgccggaa tataactact
     6361 cggtaccggg tgtgctgaaa aatgccatcg actggctttc ccgcctgccg gatcaaccgc
     6421 tggccggtaa accggtgttg attcagacca gctcaatggg cgtgattggc ggcgcgcgct
     6481 gtcagtatca cctgcgccag attctggttt tcctcgatgc aatggtgatg aacaagccgg
     6541 aatttatggg cggcgtgatt cagaacaaag ttgatcggca aaccggagaa gtgattgatc
     6601 agggtacgct ggaccacctg accgggcaat tgaccgcatt tggtgagttt attcagcgag
     6661 ttaagatcta aataaaaaac ccgccagtaa tcatgcatgg cgggttttta atgcgctatc
     6721 gattttaatg agcgtcgata aatacaatct tcaggataaa cagcagcgca acgatgatta
     6781 cgcacgggct aaggtcacgc agacgcccgg taccaatatt catcacgcag taggagataa
     6841 agcccagcgc aataccttcg gtaatcgaaa agctgaacgg catcatcacg gcggtaataa
     6901 acgccggaac agattcagta agatcctgcc agttcacgcg agcaagactt gaggtcatca
     6961 acacgccaac gtagatcaac gcgccagctg cagcgtagcc tagcaccatt cccgccagcg
     7021 gcgacagaaa gataaccagc aggaacagca gaccaacaac cactgccgtc agaccggtac
     7081 gaccgccaac cgatacgccg gaagaggact caatataagc cgtaacggaa gaagtaccga
     7141 taaacgaacc ggtcacggaa gagatactgt cgacatacag cgcctgcttc atgcgcggga
     7201 atttcccctt ctcatccgcc agacctgctt tatcggtcac gccaatcagc gtaccggagg
     7261 agtcaaacaa gttgaccaac atgaaagaga aaatcacccc tgccagcccg aggttaaacg
     7321 acccggctaa atctacatga cccacaactg tcattacgct cggcggcgca gaaacgatgc
     7381 cattgtagtg cacatcaccc agcatccagc ccagcagcgt cgtcaccacg atagaaacca
     7441 gcaccgctgc gtgaatgttg cgcgaggcca gaatagcaat gatgaagaag ccgaggatac
     7501 ccagaagtac gctgtgagaa gtcagattac cgatgctcac cagcgtttcc gagttagcga
     7561 caatcacacc tgcgtttttc agccccatca tgccgataaa caggccgata ccgctggtaa
     7621 tacccacacg cagacttacc ggaatgttag caatcatcca gtaacgaacg cggaaaatgg
     7681 tcaaaagaag cagtccgaca gcgccccaga agattgcgcc cataccgatc tgccacggca
     7741 gccccattgc ctggacaacc acaaaagcga aaaaggcgtt aagccccatc gcaggagcca
     7801 gcgccaccgg aaggtttgca aacaatccca tcataatgct accgaaagca gcaatcagac
     7861 aggttgttac gaagacggca ctggtgtcca tgccagcaac gcccagaatt tgtgggttaa
     7921 caaaaacgat gtaaaccatc gtcaggaagg tggtaaaacc ggcgatcact tcggtccgtg
     7981 ccgtcgtgcc atgttcgcgc agtttaaaca cgcgttccag catcccctgg ccagaagcct
     8041 gggttgtgtg ttgttgactc attatcta
//
LOCUS       DADMHM010000176         8041 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.179, whole genome shotgun sequence.
ACCESSION   DADMHM010000176 DADMHM010000000
VERSION     DADMHM010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8041)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8041)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8041
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.179"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..413)
                     /locus_tag="JN125_003345"
     CDS             complement(<1..413)
                     /locus_tag="JN125_003345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311911.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dienelactone hydrolase family protein"
                     /protein_id="HAY8873005.1"
                     /translation="MPRLTAKDFPQELLDYYDYYAHGKISKREFLNLAAKYAVGGMTA
                     LALFDLLKPNYALTTQVEFTDPEIVAEYITYPSPNGHGEVRGYLVKPAKMSGKTPAVV
                     VVHENRGLNPYIEDVARRVTKAGYIALAPDGLSSVG"
     gene            569..1609
                     /gene="gpr"
                     /locus_tag="JN125_003346"
     CDS             569..1609
                     /gene="gpr"
                     /locus_tag="JN125_003346"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-glyceraldehyde 3-phosphate reductase"
                     /protein_id="HAY8873006.1"
                     /translation="MVWLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALES
                     QRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDM
                     WPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSG
                     KALYAGISSYSPERTQKMVELLHEWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVG
                     CIAFTPLAQGLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQ
                     RGQSMAQMALSWLLKNDRVTSVLIGVSRAEQLEENVQALNNLTFSTEELAQIDQHIAD
                     GELNLWQASSDK"
     gene            complement(1649..2143)
                     /locus_tag="JN125_003347"
     CDS             complement(1649..2143)
                     /locus_tag="JN125_003347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00645 family protein"
                     /protein_id="HAY8873007.1"
                     /translation="MERFLENAMYASRWLLAPVYFGLSLALVALALKFFQEIIHVLPN
                     IFSMAESDLILVLLSLVDMTLVGGLLVMVMFSGYENFVSQLDISENKEKLNWLGKMDA
                     TSLKNKVAASIVAISSIHLLRVFMDAKNVPDNKLMWYVIIHLTFVLSAFVMGYLDRLT
                     RHNH"
     gene            2334..3218
                     /gene="yghA"
                     /locus_tag="JN125_003348"
     CDS             2334..3218
                     /gene="yghA"
                     /locus_tag="JN125_003348"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP(+)-dependent aldehyde reductase"
                     /protein_id="HAY8873008.1"
                     /translation="MSHLKDPTTQYYTGEYPKQKQPTPGIQAKMTPVPDCGEKTYVGS
                     GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKA
                     VLLPGDLSDEKFARSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAIN
                     VFALFWLTQEAIPLLPKGASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVA
                     EKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQE
                     SSYVTAEVHGVCGGEHLG"
     gene            complement(3377..3802)
                     /gene="exbD"
                     /locus_tag="JN125_003349"
     CDS             complement(3377..3802)
                     /gene="exbD"
                     /locus_tag="JN125_003349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HAY8873009.1"
                     /translation="MAMHLNENLDDNGEMHDINVTPFIDVMLVLLIIFMVAAPLATVD
                     VKVNLPASTSTPQPRPEKPVYLSVKADNSMFIGNDPVTDETMITALNALTEGKKDTTI
                     FFRADKTVDYETLMKVMDTLHQAGYLKIGLVGEETAKAK"
     gene            complement(3809..4543)
                     /gene="exbB"
                     /locus_tag="JN125_003350"
     CDS             complement(3809..4543)
                     /gene="exbB"
                     /locus_tag="JN125_003350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tol-pal system-associated acyl-CoA thioesterase"
                     /protein_id="HAY8873010.1"
                     /translation="MGNNLMQTDLSVWGMYQHADIVVKCVMIGLILASVVTWAIFFSK
                     SVEFFNQKRRLKREQQLLAEARSLNQANDIAADFGSKSLSLHLFNEAQNELELSEGSD
                     DNEGIKERTSFRLERRVAAVGRQMGRGNGYLATIGAISPFVGLFGTVWGIMNSFIGIA
                     QTQTTNLAVVAPGIAEALLATAIGLVAAIPAVVIYNVFARQIGGFKAMLGDVAAQVLL
                     LQSRDLDLEASAAAHPVRVAQKLRAG"
     gene            4795..5982
                     /gene="metC"
                     /locus_tag="JN125_003351"
     CDS             4795..5982
                     /gene="metC"
                     /locus_tag="JN125_003351"
                     /EC_number="4.4.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HAY8873011.1"
                     /translation="MADKKLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFESMEAKKH
                     ATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCALFPCGAAAVANSILAFVEQGD
                     HVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSIT
                     MEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDA
                     MIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEW
                     LAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLSNEELANYLDNFSLF
                     SMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLTRLHIGLEDVDDLIADLDAGFA
                     RIV"
     gene            6122..6781
                     /locus_tag="JN125_003352"
     CDS             6122..6781
                     /locus_tag="JN125_003352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HAY8873012.1"
                     /translation="MAVIQDIIAALWQHDFAALADPHIVSVVYFVMFATLFLENGLLP
                     ASFLPGDSLLILAGALIAQGVMDFLPTIAILTAAASLGCWLSYIQGRWLGNTKTVKGW
                     LAQLPAQYHQRATCMFDRHGLLALLAGRFLAFVRTLLPTMAGISGLPNRRFQFFNWLS
                     GLLWVSVVTSFGYALSMIPFVKRHEDQVMTFLMILPIALLTAGLLGMLFVVIKKKYCN
                     A"
     gene            complement(6821..7720)
                     /locus_tag="JN125_003353"
     CDS             complement(6821..7720)
                     /locus_tag="JN125_003353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003024513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HAY8873013.1"
                     /translation="MKREEICRLLADKVNKLKNKENSLSELLPDVRLLYGETPFARTP
                     VMYEPGIIILFSGHKIGYINERVFRYDANEYLLLTVPLPFECETYATSEVPLAGLRLN
                     VDILQLQELLMDIGEDEHFQPSMAASGINSATLSEEILCAAERLLDVMERPLDARILG
                     KQIIREILYYVLTGPCGGALLALVSRQTHFSLISRVLKRIENKYTENLSVEQLAAEAN
                     MSVSAFHHNFKSVTSTSPLQYLKNYRLHKARMMIIHDGMKASAAAMRVGYESASQFSR
                     EFKRYFGVTPGEDAARMRAMQGN"
     gene            7914..>8041
                     /locus_tag="JN125_003354"
     CDS             7914..>8041
                     /locus_tag="JN125_003354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020883658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase"
                     /protein_id="HAY8873014.1"
                     /translation="MNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVK"
BASE COUNT         2008 a         2062 c         2014 g         1957 t
ORIGIN      
        1 ccaacggaac ttaagccgtc aggtgccagg gcgatatacc ccgccttcgt cactcgccgt
       61 gccacatctt cgatatacgg attcagtcca cgattctcat gcaccaccac cacggctggc
      121 gttttgccgc tcatttttgc gggtttcacc agataacccc gtacctcgcc gtgaccattt
      181 ggcgaaggat acgtgatgta ctcagcaaca atctccgggt cggtaaactc tacctgagtc
      241 gtcagcgcat aatttggctt gagcaaatca aacaacgcta atgccgtcat cccgcccacc
      301 gcatacttcg ccgcaaggtt gaggaactca cgtttcgaaa ttttcccgtg agcgtaatag
      361 tcgtagtaat ccaacaactc ttgtgggaaa tctttggcgg ttaaacgcgg catcgttgca
      421 ttcctcaact ggtgtttttt aagcaaagca taagcgcgtg tttttgccca gtttttcgtc
      481 actctgtgag ccagactacg ggatacgcgc tggcgaatcg ctaaactaga aacattgttt
      541 cgaaattgaa cggtggaaag gagaggtcat ggtctggtta gcgaatcccg aacgttacgg
      601 gcagatgcag taccgctatt gcggaaaaag tggtttacgc ctgcccgcgt tatcgctcgg
      661 tttatggcac aatttcggtc acgttaacgc gctggaatca cagcgtgcaa tcctgcgtaa
      721 agcgtttgat ttaggcatta cgcactttga tttagccaac aattacgggc cgcctccagg
      781 aagcgcagaa gagaactttg gtcgcctgct gcgggaggat tttgccgctt atcgcgatga
      841 actgattatc tctaccaagg ctggctacga tatgtggccc ggcccttacg gctctggcgg
      901 ttcacgtaaa tacctgctcg ccagcctcga ccaaagcctg aagcgtatgg ggcttgagta
      961 tgtcgatatc ttttactctc atcgcgtcga tgaaaatacg ccgatggaag aaaccgcctc
     1021 tgcgctggct catgcggtac aaagcggtaa ggcgctgtat gccgggatct cctcttactc
     1081 gccagagcgg acgcaaaaaa tggtcgagtt gctgcacgag tggaaaattc cgcttttaat
     1141 tcatcaacct tcgtacaatt tactgaaccg ctgggtggat aaaagcggcc tgctggatac
     1201 cctgcaaaat aacggcgtgg gctgtattgc ctttactcct ctggctcagg gattgctgac
     1261 cggaaaatat ctcaacggca taccgcaaga ttcacggatg catcgtgaag ggaataaagt
     1321 tcgtggtctg acgccgaaaa tgcttaccga agccaacctc aacagcctgc gcttattgaa
     1381 tgaaatggca cagcagcgtg gacaatcaat ggcgcaaatg gcgttaagct ggttgctgaa
     1441 aaatgatcgc gtgacgtcgg tattgattgg tgtcagccgc gcggagcaac tagaggagaa
     1501 cgtgcaggcg ctgaataatc tgacatttag caccgaggag ctggcgcaga ttgatcagca
     1561 tatcgccgat ggcgagctga atctgtggca ggcgtcttcc gataaatgac ttgttaataa
     1621 cgggcgcgcg aaccgcgccc gaatcagatc agtgattatg acgagtcagt cggtcaagat
     1681 agcccatcac aaatgcagag agcacaaacg tcagatggat aatgacgtac cacatcagtt
     1741 tgttatccgg gacatttttc gcatccataa agacgcgcag taagtgaatg gaagaaattg
     1801 ccacaatcga cgctgctact ttgtttttca gcgacgttgc gtccattttc cccagccagt
     1861 tcagcttctc tttgttctcg gagatatcca gctgcgagac gaaattctca taaccggaaa
     1921 acatcaccat caccagcaaa ccgccaacca gcgtcatatc caccagcgac agcaacacga
     1981 ggatcaaatc tgattccgcc atcgagaaga tattcggcag tacgtgaata atctcctgga
     2041 agaacttcag cgccagggca actaacgcca gcgaaaggcc aaagtacacg ggggcaagca
     2101 gccagcgaga agcatacatt gcattttcaa gaaaacgttc catacattcc tgtcgtgtag
     2161 ttaaaacggg caacagtata tcgcaattga gtaaacagca cgcaacagca aatcaacata
     2221 tacgttaaac ctttgtcgca taattctgag gtttagggat cttcctggtt cccttatcaa
     2281 cgcatcgaga gcgtctaccc ttaaaagacg ttgaacctga agggagaaaa acaatgtctc
     2341 atttaaaaga cccgactacg cagtattaca ctggtgaata tcccaaacag aaacaaccga
     2401 cgccaggcat ccaggcgaag atgacaccgg taccggattg cggcgagaaa acctatgttg
     2461 gtagcggtcg cctgaaagat cgtaaagcac tggtgacagg gggcgattcc ggaataggtc
     2521 gcgctgccgc catcgcttac gcgcgtgaag gggctgacgt ggcgatcagt tatcttcccg
     2581 tggaagaaga agacgctcag gatgtgaaaa agatcattga agaatgcgga cgcaaagccg
     2641 ttctgctgcc aggcgattta agcgatgaga aattcgcccg ttcgctggtt cacgaagcgc
     2701 acaaggcgtt aggtgggctg gatattatgg cgctggtcgc cgggaaacag gttgccattc
     2761 cggatattgc agacctcacc agcgaacagt ttcaaaagac ctttgccatt aacgttttcg
     2821 cgctgttctg gctaacccag gaagcgatcc ccctgctacc gaaaggtgca agtatcatca
     2881 ccacttcgtc aatccaggca taccagccaa gtccgcattt actggactat gcggctacga
     2941 aggcggcgat tctgaactac agccgtggcc tggcaaaaca ggtcgcggag aaaggtattc
     3001 gggtgaatat tgtcgcgcca ggccctatct ggacggcact gcaaatttcc ggcggacaaa
     3061 cgcaggataa gatcccgcag tttggtcagc aaacgccgat gaagcgtgcg gggcaaccgg
     3121 cggaactggc ccctgtatat gtttatctgg caagtcagga gtcgagctac gtcaccgcag
     3181 aagtgcacgg tgtgtgcggc ggcgagcatt taggttaaaa aaatgcccgg ttgtgaaaag
     3241 caaccgggca tcattgtgaa ttcactctta cctgatgtgg cgaaaacgcc ttatccgcct
     3301 acaaacgcat gaagattcaa catgttgcaa tagattttgt aggcctgatg agcgtagcgc
     3361 atcaggcaat tctactttac ttcgctttgg cggtttcttc gccgaccaga cctatcttca
     3421 ggtaacccgc ctgatgcagc gtatccatta ccttcatcaa cgtctcgtaa tcgacggttt
     3481 tatccgctcg gaagaagatg gtggtgtctt tcttgccttc ggttaacgca ttcaacgccg
     3541 taatcattgt ttcatcggtg accggatcgt taccgataaa catcgagttg tctgccttca
     3601 ccgacagata aaccggtttt tccgggcgcg gctgcggcgt gctggtagaa gcaggcaagt
     3661 tcaccttcac atctaccgtc gctaacggtg ccgccaccat aaagataatc agcagaacca
     3721 acatcacgtc gataaacggc gtcacgttga tatcatgcat ttcgccgtta tcgtcgaggt
     3781 tttcgttaag atgcattgcc atcggatatt atcctgcgcg taatttttgt gcgacacgaa
     3841 ccggatgcgc agcggcgctg gcttccagat ccaggtcacg gctttgcagc aacaatacct
     3901 gcgctgcaac atcacccagc atcgctttaa agccgccaat ctggcgtgca aatacgttat
     3961 agataacgac cgcaggaatc gctgccacga ggccgattgc cgttgctaac agagcttctg
     4021 cgatacccgg cgcaacgact gccaggttag tggtctgcgt ttgcgcgata ccaataaagc
     4081 tgttcatgat gccccagacc gtaccaaaca gaccaacgaa cggagaaatc gcgccgatgg
     4141 ttgccagata gccgttaccg cggcccattt gacgacccac tgcggcgacc cgacgctcca
     4201 gacggaagct ggtacgttct ttaatacctt cgttatcgtc gctgccttct gacagttcca
     4261 gctcattctg cgcttcattg aacaaatgca ggcttaagct tttgctacca aaatcagcgg
     4321 cgatatcgtt ggcctggttt aaggaacgcg cttcagccag cagttgctgc tcgcgcttta
     4381 ggcgacgctt ctgattgaag aactctacgc tcttactgaa gaagattgcc caggtgacta
     4441 cggaggccaa aataagccca atcatcacgc acttaacgac aatatcggcg tgctgataca
     4501 taccccagac ggaaaggtcc gtctgcatta aattattacc cactgtgtat ctccaggacg
     4561 caagtcacaa aatctgcgca taataatatc aaaacgacgt cgaattgata gtcgttctca
     4621 ttactatttg catactgccg tacctttgct ttcttttcct tgcgtttacg cagtaaaaaa
     4681 gtcaccagca cgccatttgc gaaaattttc tgctttatgc caattcttca ggatgcgccc
     4741 gcgaatattc atgctagttt agacatccag acgtataaaa acaggaatcc cgacatggcg
     4801 gacaaaaagc ttgatactca actggtgaat gcaggacgca gcaaaaaata cactcttggc
     4861 gcggtaaata gcgtgattca gcgcgcttct tcgctggtat ttgagagtat ggaagccaaa
     4921 aagcacgcga cgcgcaatcg cgccaatggc gagttgttct atggacggcg cggaacgtta
     4981 acccattttt ccttacaaca agcgatgtgt gaactggaag gtggcgcagg ctgcgcgcta
     5041 tttccctgcg gggcggcagc ggttgctaat tcgattcttg cttttgtcga acagggcgat
     5101 catgtgttga tgaccaacac tgcctatgaa ccgagtcagg atttctgtag caaaatcctc
     5161 agcaaactgg gcgtaacgac atcgtggttt gatccgctga ttggtgccga tatcgttaag
     5221 catctgcagc caaacactaa aatcgtgttt ctggaatcgc caggctccat caccatggaa
     5281 gtccacgacg ttccggcgat tgttgccgcc gtacgcagtg tggtgccgga tgccatcatt
     5341 atgatcgaca acacctgggc agccggtgtg ctgtttaagg cgctggattt tggcatcgat
     5401 gtttctattc aagccgccac caaatatctg gttgggcatt cagatgcgat gattggcact
     5461 gccgtgtgca atgcccgttg ctgggagcag ctacgggaaa acgcctatct gatgggccag
     5521 atggtcgatg ccgataccgc ctatataacc agccgtggcc tgcgcacatt aggtgtgcgt
     5581 ttgcgtcaac atcatgaaag cagtctgaaa gtggctgaat ggctggcaga acatccgcaa
     5641 gtagcgcgag ttaaccaccc tgctctgcct ggcagtaaag gacacgaatt ctggaaacga
     5701 gactttacag gtagcagcgg gctgttttcc tttgtgctta agaaaaaact cagtaatgaa
     5761 gagctggcga actatctgga taacttcagt ttattcagca tggcctactc gtggggcggg
     5821 tatgaatcgt tgatcctggc gaatcaacca gaacatatcg ccgccattcg cccacaaggc
     5881 gagatcgatt ttagcgggac cttgactcgc ctgcatattg gtctggaaga tgtcgacgat
     5941 ctgattgccg atctggacgc cggttttgcg cgaattgtat aacattgcca cttttggaca
     6001 attttgcaga catttaattg tgaaaagtct taaattgttg cgtccgggat caaggcgtcc
     6061 cggacgaatc aggagtacaa taggcagata aaggcttaaa cgctgttcca caggaaagtc
     6121 catggctgtt attcaagata tcatcgctgc gctctggcaa cacgactttg ccgcgctggc
     6181 ggatcctcat attgttagcg ttgtttactt tgtcatgttt gccacgctgt ttttagaaaa
     6241 cggcctgctg cccgcctcat ttttgccagg cgacagcttg ttgatactgg caggcgcatt
     6301 gattgcccag ggggttatgg attttctgcc tacgattgcg attctgaccg ccgcagcaag
     6361 tctgggctgc tggctaagtt atattcaggg gcgctggtta gggaatacca aaacggtgaa
     6421 aggctggctg gcacagcttc ctgctcaata tcaccagcgc gccacctgca tgtttgaccg
     6481 ccacggtctg ctggcgctgc tggctggacg ttttcttgca tttgtccgta cgctgctgcc
     6541 aaccatggcg ggaatttccg gtctgccaaa ccgccgcttc cagtttttca actggttaag
     6601 tggattgctg tgggtcagcg tggtaaccag ttttggctat gccttaagta tgattccgtt
     6661 cgttaaacgc catgaagatc aggtaatgac gttcctgatg atcctgccaa ttgccttgtt
     6721 aaccgctggc ttgttaggca tgctgtttgt ggtgattaaa aaaaaatact gtaacgcctg
     6781 acgattttcc ccgttcccgg ctgctgtacc gggaacgtat ttaattcccc tgcatcgccc
     6841 gcattcttgc cgcatcttcc cccggcgtca caccgaagta acgtttaaac tcacggctaa
     6901 attgcgatgc gctttcatag ccgacgcgca tcgctgctgc gctggccttc atgccgtcat
     6961 ggatgatcat catccgcgcc ttatgcagac ggtaattctt caaatactgc aacggcgagg
     7021 tgctggtgac agacttaaaa ttatggtgga acgccgatac gctcatgttg gcttctgccg
     7081 ccagttgctc gacgctcagg ttttcggtgt atttattctc aatccgtttc agcacgcggc
     7141 taatcagact gaagtgagtc tggcgactga ccagcgccag taacgcgccg ccgcaaggtc
     7201 cggtcagcac gtagtacaga atttcgcgga tgatctgttt gccgagaata cgcgcatcca
     7261 gtggtcgctc catcacgtcg agtaaccgct ccgccgcgca taaaatctct tctgataacg
     7321 tggcggagtt aatcccgctg gctgccatcg acggctggaa atgctcatct tcgccaatgt
     7381 ccatcaacag ttcctgtaac tgcaaaatat cgacattgag acgcaaccct gccagcggca
     7441 cctctgacgt ggcataggtt tcgcactcaa acggcaacgg caccgtcagc agcaggtatt
     7501 cattggcatc ataacgaaac acgcgttcat tgatataacc gattttatgc ccggaaaaga
     7561 gaattatgat gccaggctcg tacatcaccg gtgtacgtgc gaaaggcgtc tcgccataca
     7621 acaaacgcac atcgggcaac agttctgaca aactattttc tttatttttc agtttattaa
     7681 ctttatccgc cagcaagcgg caaatctctt cacgtttcat atcgcgtaat ttcttaggaa
     7741 taatgcggca atttgattgt gcgcaatttt gtagcatttc tccagcactc tggagaaata
     7801 ggcaagacat tggcagaaat gagcattgag agccagggcg ctggcgatca caatgaaaaa
     7861 catcaggcag atcgttctct gccctcatat tggcccagca aagggagcaa gtaatgaaca
     7921 actttaatct gcacacccca acccgcattc tgtttggtaa aggcgcaatc gctggtttac
     7981 gcgaacaaat tcctcacgat gctcgcgtat tgattaccta cggtggcggc agcgtgaaaa
     8041 a
//
LOCUS       DADMHM010000177         8034 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.180, whole genome shotgun sequence.
ACCESSION   DADMHM010000177 DADMHM010000000
VERSION     DADMHM010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8034)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8034)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8034
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.180"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            1..188
                     /locus_tag="JN125_003355"
                     /pseudo
     CDS             1..188
                     /locus_tag="JN125_003355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001402762.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
     gene            411..908
                     /gene="ubiC"
                     /locus_tag="JN125_003356"
     CDS             411..908
                     /gene="ubiC"
                     /locus_tag="JN125_003356"
                     /EC_number="4.1.3.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709881.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate lyase"
                     /protein_id="HAY8873015.1"
                     /translation="MSHPALTQLRALRYFKEIPALDPQLLDWLLLEDSMTKRFEQQGK
                     TVSVTMIREGFVEQNEIPEELPLLPKESRYWLREILLCADGEPWLAGRTVVPVSTLSG
                     PELALQKLGKTPLGRYLFTSSTLTRDFIEIGRDAGLWGRRSRLRLSGKPLLLTELFLP
                     ASPLY"
     gene            921..1793
                     /gene="ubiA"
                     /locus_tag="JN125_003357"
     CDS             921..1793
                     /gene="ubiA"
                     /locus_tag="JN125_003357"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate octaprenyltransferase"
                     /protein_id="HAY8873016.1"
                     /translation="MEWSLTQNKLLAFHRLMRTDKPIGALLLLWPTLWALWVATPGVP
                     QLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTANRPLPSGAVTEKEARALFVV
                     LVLISFLLVLTLNTMTILLSIAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAA
                     VSESVPLSCWLMFLANILWAVAYDTQYAMVDRDDDVKIGIKSTAILFGQYDKLIIGIL
                     QIGVLALMAIIGELNGLGWGYYWSILVAGALFVYQQKLIANREREACFKAFMNNNYVG
                     LVLFLGLAMSYWHF"
     gene            complement(1948..4371)
                     /gene="plsB"
                     /locus_tag="JN125_003358"
     CDS             complement(1948..4371)
                     /gene="plsB"
                     /locus_tag="JN125_003358"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418465.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsB"
                     /protein_id="HAY8873017.1"
                     /translation="MSGWPRIYYKLLNLPLSILVKSKSIPADPAPELGLDTSRPIMYV
                     LPYNSKADLLTLRAQCLAHDLPDPLEPLEIDGMLLPRYVFIHGGPRVFTYYTPKEESI
                     KLFHDYLDLHRSNPNLDVQMVPVSVMFGRAPGREKGEVNPPLRMLNGVQKFFAVLWLG
                     RDSFVRFSPSVSLRRMADEHGTDKTIAQKLARVARMHFARQRLAAVGPRLPARQDLFN
                     KLLASRAIAKAVEDEAHSKKISHEKAQQNAIALMEEIAANFSYEMIRLTDRILGFTWN
                     RLYQGINVHNAERVRQLAHDGHELVYVPCHRSHMDYLLLSYVLYHQGLVPPHIAAGIN
                     LNFWPAGPIFRRLGAFFIRRTFKGNKLYSTVFREYLGELFSRGYSVEYFVEGGRSRTG
                     RLLDPKTGTLSMTIQAMLRGGTRPITLIPIYIGYEHVMEVGTYAKELRGATKEKESLP
                     QMLRGLSKLRNLGQGYVNFGEPMPLMTYLNQHVPDWRESIDPIEAVRPAWLTPTVNNI
                     AADLMVRINNAGAANAMNLCCTALLASRQRSLTREQLTEQLNCYLDLMRNVPYSTDST
                     VPSASASELIDHALQMNKFEVEKDTIGDIIILPREQAVLMTYYRNNIAHMLVLPSLMA
                     AIVTQHRHISRDVLMEHVNVLYPMLKAELFLRWDRDELPDVIDALANEMQRQGLITLQ
                     DDELHINPSHSRTLQLLAAGARETLQRYAITFWLLSANPSINRGTLEKESRTVAQRLS
                     VLHGINAPEFFDKAVFSSLVLTLRDEGYISDSGDAEPAETMKVYQLLAELITSDVRLT
                     IESATQGEG"
     gene            4542..4910
                     /locus_tag="JN125_003359"
     CDS             4542..4910
                     /locus_tag="JN125_003359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HAY8873018.1"
                     /translation="MANNTTGFTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVV
                     IACWLDVDAITRVLLISSVMLVMIVEILNSAIEAVVDRIGSEYHELSGRAKDMGSAAV
                     LIAIIVAVITWCILLWSHFG"
     gene            5020..5628
                     /gene="lexA"
                     /locus_tag="JN125_003360"
     CDS             5020..5628
                     /gene="lexA"
                     /locus_tag="JN125_003360"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000646075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="repressor LexA"
                     /protein_id="HAY8873019.1"
                     /translation="MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAE
                     EHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLLAQQHIEGHYQVDP
                     SLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARIDDEVTVKRLKK
                     QGNKVELLPENSEFKPIVVDLRQQSFTIEGLAVGVIRNGDWL"
     gene            5647..7026
                     /gene="dinF"
                     /locus_tag="JN125_003361"
     CDS             5647..7026
                     /gene="dinF"
                     /locus_tag="JN125_003361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709876.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter DinF"
                     /protein_id="HAY8873020.1"
                     /translation="MPPGVAVCFSSLFIRLVCMAFLTSSDKALWHLALPMIFSNITVP
                     LLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAYGAKNPQA
                     LARALVQPLLLALGAGALIALLRTPIIDLALHIVGGSEAVLEQARRFLEIRWLSAPAS
                     LANLVLLGWLLGVQYARAPVILLVVGNILNIVLDVWLVMGLHMNVQGAALATVIAEYA
                     TLLIGLLMVRKILKLRGISGEMLKTAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVL
                     GARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACR
                     QSGIVALLFSVVYLLAGEHIIALLTSLTQIQQLADRYLIWQVILPLVGVWCYLLDGMF
                     IGATRAAEMRNSMAVAAAGFALTLLTLPWLGNHALWLALTVFLALRGLSLAAIWRRHW
                     RNGTWFAAT"
     gene            7142..7351
                     /locus_tag="JN125_003362"
     CDS             7142..7351
                     /locus_tag="JN125_003362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HAY8873021.1"
                     /translation="MNKDEAGGNWKQFKGKVKEQWGKLTDDDMTIIEGKRDQLVGKIQ
                     ERYGYQKDQAEKEVVDWETRNEYRW"
     gene            complement(7393..7908)
                     /gene="zur"
                     /locus_tag="JN125_003363"
     CDS             complement(7393..7908)
                     /gene="zur"
                     /locus_tag="JN125_003363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc uptake transcriptional repressor Zur"
                     /protein_id="HAY8873022.1"
                     /translation="MEKTTTQELLAQAEKICAQRNVRLTPQRLEVLRLMSLQDGAISA
                     YDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKVESTNSYVLCHLFDQSTHTSAMFI
                     CDRCGAVKEECAEGVEDIMHTLAAKMGFALRHNVIEAHGLCAACVEVEACRHPEQCQH
                     DHSVQVKKKPR"
BASE COUNT         1812 a         1968 c         2208 g         2046 t
ORIGIN      
        1 atatgttgaa tcctacaaaa gataccaatt ggaattccac gtgtatctat aaatcctgac
       61 ataagatgtt gcctgttaat cttactcagg aaacactttt caactccaaa tctcaggata
      121 aacatgcgct tttccccatt tttactgcga gttggcgagc ttatcgtata atgaataagg
      181 gtgcttaagt aaaggaaaac atcaccgttc ctggcatcct gggcggtgat gcccctatgg
      241 ttgccctcgc cagcgcgggc atcggcaaag cgtaaggttc aaaagcgatt taccacttca
      301 tgcgattgtt gcgtttttgt tgcgcattag atcacttaat ttgctttaca tctcccgtaa
      361 acacttttct gcgatacaat gcctttacgt tatgtaacgg agagttcggc atgtcacacc
      421 ccgcgttaac gcaactgcgt gcgctgcgct attttaaaga gatccctgcc ctggatccgc
      481 aactgctcga ctggctgttg ctggaggatt ccatgacaaa acgttttgaa cagcagggaa
      541 aaacggtaag cgtgacgatg atccgcgaag ggtttgtcga gcagaatgaa atccccgaag
      601 aactgccgct gctgccgaaa gagtctcgtt actggttacg tgaaattttg ttatgtgccg
      661 atggtgaacc gtggcttgcc ggtcgtaccg tcgttcctgt gtcaacgtta agcgggccgg
      721 agctggcgtt acaaaaattg ggtaaaacgc cgttaggacg ctatctgttc acatcatcga
      781 cattaacccg ggactttatt gagataggcc gtgatgccgg gctgtggggg cgacgttccc
      841 gcctgcgatt aagcggtaaa ccgctgttgt taacagaact gtttttaccg gcgtcaccgt
      901 tgtactaaga ggaaaaaaat atggagtgga gtctgacgca gaataagctg ctggcgtttc
      961 atcgcttaat gcgtacggat aagccaattg gcgcgttact gctgctctgg ccaacattat
     1021 gggcgttgtg ggtggcgaca ccgggcgttc ctcagctctg gatcctggcg gtatttgtcg
     1081 cgggtgtctg gctgatgcgc gctgccggat gtgtggtgaa tgattatgct gaccgaaagt
     1141 ttgatggtca tgttaagcgc acggcgaacc gaccacttcc cagcggcgcg gtaacagaga
     1201 aagaggcgcg cgcgctgttt gtagtgctgg tactgatttc gtttttactg gtactgacgc
     1261 tgaatacgat gaccattctg ttgtcgattg ccgctctggc gttggcgtgg gtgtacccgt
     1321 ttatgaagcg gtatacccat ctcccgcaag tggtgctggg cgcggcgttt ggctggtcga
     1381 ttccaatggc ttttgccgct gtgagtgagt cggtgccatt gagttgctgg ttaatgttcc
     1441 tcgccaatat tctctgggcg gtggcttacg acacgcagta tgcgatggtt gaccgcgatg
     1501 atgatgtgaa gattggcatt aaatccacgg caatcctgtt cggccaatac gataaattga
     1561 ttattggtat tttgcagatt ggcgtactgg cactgatggc gatcatcggt gagttaaatg
     1621 gcttaggctg gggatattac tggtcaattc tggtggctgg cgcgctgttt gtttatcaac
     1681 aaaaactgat tgccaaccgc gagcgtgaag cctgctttaa agcatttatg aataataact
     1741 atgttggtct ggtactattt ttagggctgg caatgagtta ctggcatttc tgatgatgta
     1801 aaaaagccgg atgatcatcc ggctttcttc tgggttgcct gatgcgcggc gcttctcagg
     1861 cctacacaac acatcgcaat ttattgaatt tgcagattat ggaatgccgg ataaggcgtt
     1921 ttcgccgcat ccggcaattc tctctggtta cccttcgccc tgcgtcgcac tctcaatcgt
     1981 caaacgcacg tctgatgtaa tcaactccgc cagcaactga taaaccttca tcgtttctgc
     2041 cggttcggca tcgccgctat cgctgatata cccttcatca cgcagcgtca gcaccagaga
     2101 actgaacacc gccttgtcga agaactccgg cgcgttgata ccgtgcagca cggagagacg
     2161 ttgcgcgacg gtgcggctct ctttctccag cgtaccgcgg ttgatcgacg ggttagcgct
     2221 caacagccag aaggtgatgg cataacgttg cagcgtttcg cgcgcgcctg cggccagcag
     2281 ctgtagcgtg cgagaatgcg acgggttgat atgcaactca tcatcttgca gggtaatcag
     2341 cccctgacgt tgcatctcat ttgccaacgc atcaataacg tccggcaact cgtcgcgatc
     2401 ccagcgcagg aacagctccg ctttcagcat tgggtaaagc acattgacgt gctccatcaa
     2461 tacgtcgcgg gagatgtggc gatgctgggt gacaattgcc gccatcagcg aaggcagcac
     2521 caacatatgc gcaatgttgt tgcgatagta ggtcatcagc accgcttgct cgcgcggcag
     2581 aatgatgatg tcgccgatag tgtctttctc aacttcaaac ttgttcattt gcagcgcgtg
     2641 atcgataagc tcgctggcgc tggctgaagg aacggtagag tccgtggagt aaggtacgtt
     2701 gcgcatcaga tccaggtagc agttgagttg ctcggttaac tgctcgcggg taagtgagcg
     2761 ctgacgtgat gccagtagcg cggtacagca gaggttcatg gcgtttgccg cgcctgcgtt
     2821 gttaatgcgt accatcagat cggcagcaat attattgacc gtcggcgtta accatgccgg
     2881 acgcaccgct tcgatgggat cgatagattc acgccagtca ggtacatgct ggttaaggta
     2941 ggtcatcaac ggcattggtt caccgaagtt gacgtaaccc tgaccgagat tacgcagctt
     3001 gcttaaaccg cgcagcatct gcggcaggct ctctttctct ttcgtcgcac cgcgcagttc
     3061 tttggcgtaa gtccccactt ccatgacgtg ctcataaccg atatagatcg gaatcagcgt
     3121 aatcggacgc gtgccgccac gcagcatcgc ctgaatggtc atcgacagcg taccggtttt
     3181 cggatccagc aaacgccccg tacgggaacg accgccttcc acgaaatact cgacggaata
     3241 accacggctg aacagttcgc cgagatactc acggaaaacg gtggaataaa gtttattgcc
     3301 tttaaacgta cggcgaataa agaacgcccc cagacggcgg aaaatcggcc cggccggcca
     3361 gaaattcagg ttgatcccgg cggcgatatg cggcggcacg agcccctggt ggtacagcac
     3421 gtaagaaagt agcaggtagt ccatgtgact gcggtggcaa ggcacataca ccagctcatg
     3481 accgtcgtgg gccagctggc gaacgcgctc ggcgttatgg acgttgatgc cctgataaag
     3541 tcggttccag gtgaagccca gaatgcggtc agtcaggcgg atcatctcgt aagagaaatt
     3601 cgccgcaatc tcttccatca gcgcaatcgc gttctgctgc gctttttcat gggagatttt
     3661 tttgctgtgc gcttcatctt ctaccgcttt ggcaatggcg cgggaggcga gcagcttatt
     3721 aaacagatcc tgacgagcag gcagacgtgg gcccacagca gccagacgtt gacgggcaaa
     3781 gtgcatacgc gccacgcgcg ccagtttctg tgcgatagtt ttatccgtgc cgtgttcatc
     3841 cgccatacgg cgcagcgaaa ctgacggcga gaaacgcaca aaactgtcgc gaccgagcca
     3901 cagtacggcg aaaaatttct gtacgccgtt aagcatacgc agcggcgggt ttacttcgcc
     3961 tttttcacgc cccggcgcgc gaccaaacat caccgatact ggcaccatct gcacatccag
     4021 atttgggttg ctacggtgca aatcgagata gtcgtggaac agcttaatag actcttcttt
     4081 cggcgtgtaa taggtgaata cacgcggccc gccgtgaatg aacacatagc gcggcagtag
     4141 catgccgtcg atttccagcg gctctaacgg gtcaggcaag tcatgagcca gacactgggc
     4201 gcgtaacgtc agcaaatctg ctttcgagtt gtacggtaaa acgtacataa ttggacgaga
     4261 ggtatccagc cccagttccg gggcaggatc tgccggaata gacttgcttt ttaccaggat
     4321 gcttaatggt aaattcagta atttgtagta aattcgtggc cagccggaca taaacgatgt
     4381 aaagcctctg gttaataatg caaatgcgcg gcaaggatag cagaaagtca tgggaaattc
     4441 tgtggtatcc gctcatgttt cgcgcggcgt tacgcaaacc cgaatcatcg gatttaacgg
     4501 tacactgata ttgacgctca taatgtaaaa aggttctttc aatggccaat aataccactg
     4561 gattcacccg aattatcaaa gctgctggct attcctggaa aggtttacgc gctgcatgga
     4621 tcaacgaagc ggcattccgt caggaaggcg tagcggtatt gttggcggtg gtcatcgcct
     4681 gctggctgga tgtggacgca attacccgcg tgctgcttat cagctccgtg atgctggtga
     4741 tgattgtgga aatcctcaat agcgccatcg aagcagtggt tgaccgaatt ggctctgaat
     4801 accatgagct ttccggacgc gcaaaagata tgggatccgc cgcggtgctg attgcgatta
     4861 tcgtcgccgt gataacctgg tgcatcctgt tatggtcgca ttttggataa cccttccaga
     4921 attcgataaa tctctggttt attgtgcagt ttatggttcc aaaatcgcct tttgctgtat
     4981 atactcacag tataactgta tatacaccca gggggcggaa tgaaagcgtt aacggccagg
     5041 caacaagagg tgtttgatct catccgtgat cacatcagcc agacaggtat gccgccgacg
     5101 cgtgcggaaa tcgcgcagcg tttggggttc cgttccccaa acgcggctga agaacatctg
     5161 aaggcgctgg cacgcaaagg agttattgaa attgtttccg gcgcatcacg cgggattcgt
     5221 ctgttgcagg aagaggaaga agggttgccg ctggtaggtc gtgtggctgc cggtgaaccg
     5281 cttctggcgc agcagcatat tgaaggtcat tatcaggtcg atccttcctt gttcaagccg
     5341 aatgctgatt tcctgctgcg cgtcagcggg atgtcgatga aagatattgg cattatggat
     5401 ggcgacttgc tggcagtgca taaaactcag gatgtacgta acggtcaggt cgttgtcgca
     5461 cgtattgatg acgaagttac cgttaagcgc ctgaaaaaac agggcaataa agtcgaactg
     5521 ttgccagaaa atagcgagtt taaaccaatt gtcgttgacc ttcgtcagca gagcttcacc
     5581 attgaagggc tggcggttgg agttattcgc aacggcgact ggctgtaaca tatctctgag
     5641 accgcgatgc cgccaggcgt cgcggtttgt ttttcatctc tcttcatcag gcttgtctgc
     5701 atggcattcc tcacttcatc tgataaagca ctctggcatc tcgccttacc catgattttc
     5761 tccaatatca ccgttccgtt gctgggactg gtcgatacgg cggtaattgg tcatcttgat
     5821 agtccagttt atttgggcgg cgtggcggtt ggtgcaacgg cgaccagctt tctctttatg
     5881 ctgttgctgt ttttacgcat gagcaccacc gggctgactg cgcaggctta tggtgccaaa
     5941 aatcctcagg cattagcccg tgcgctggtg caaccgttgc tgttggcgtt gggggcaggg
     6001 gcgttaattg cgctgctgcg tacaccgatt atcgatctgg cactgcatat tgttggcggt
     6061 agtgaagcag tcctggaaca ggcgcggcgc tttcttgaaa tccgctggtt aagcgcaccg
     6121 gcgtcgctgg cgaatctggt attacttggt tggttactcg gcgtgcaata tgcccgtgcg
     6181 ccagtaattt tgttagtggt cggcaatatc ctcaacattg tgctggatgt ctggctggtg
     6241 atggggctgc atatgaacgt gcagggcgcg gcgctggcga cggttattgc ggaatatgca
     6301 acattgctga ttggtctgct aatggtgcgt aaaatcctca aactacgcgg aatttccggc
     6361 gaaatgctga aaactgcctg gcgaggaaac ttccgtcgct tgctggcgct taaccgcgat
     6421 atcatgctgc gttcgctgtt gttgcaactc tgtttcggcg cgatcaccgt acttggtgcg
     6481 cgactgggga gtgacattat cgctgttaac gcggttctga tgacgctact cacctttacc
     6541 gcctatgcgc tggatggttt tgcctacgcg gttgaagcgc attccggtca ggcgtacggt
     6601 gcgcgcgacg gtagccagtt gctggatgtc tggcgggcag cgtgccgcca gtcggggatc
     6661 gtagcgttac tgttttcggt agtttatttg ctggcagggg aacacatcat tgcgttgctg
     6721 acgtcgttaa cccagattca gcagctggcc gaccgctatc ttatctggca ggtgattttg
     6781 ccgttggttg gcgtctggtg ttatctgctg gacggcatgt ttataggcgc aacgcgcgca
     6841 gccgaaatgc gtaacagtat ggcggtggcc gccgcaggtt ttgcgttgac gctccttacg
     6901 ctgccgtggc tgggtaatca tgctttgtgg ctggcgttaa ccgtctttct ggcgttgcgc
     6961 gggctttctc tggcggctat ctggcggcgt cactggcgca acggtacctg gtttgccgca
     7021 acgtgacggt taaaaattct gaataaataa tcctaagcca aattgctgac tacacttaat
     7081 ctcacgttca gaagaaaagt gaacgtactc tcattcacaa cctaacgatg aggtcttgat
     7141 tatgaataaa gatgaagccg gcggtaactg gaaacagttt aaaggtaaag tgaaagagca
     7201 atggggcaaa ctgaccgatg atgatatgac gatcattgaa ggtaaacgtg atcaactggt
     7261 cggtaaaatc caggaacgtt atggttatca gaaagatcag gcagaaaaag aggtcgtgga
     7321 ttgggaaacc cgcaatgaat atcgctggta attaatccct cctgcccgac gtgtacaagg
     7381 atgtacgccc tcttaacgcg gtttcttttt cacctgcaca gagtgatcat gctggcactg
     7441 ttcaggatga cgacacgctt ccacttccac gcatgccgca cagagcccat gtgcttcaat
     7501 cacattatgc cgcagggcaa accccatttt tgccgccagc gtatgcatga tgtcttccac
     7561 gccttctgca cactcttctt tcactgcgcc gcagcgatcg caaataaaca tggctgaagt
     7621 atgggtggac tggtcgaaca gatgacagag cacataactg ttggtggatt ccaccttatg
     7681 cacaaaacct tgctcaagca gaaaatccag cgcgcgataa accgttggcg gcttggcttg
     7741 cggttcagct tcgcgcagta aatcaagcag atcataagcg ctgatagcgc catcctgcag
     7801 actcatcagg cgcaacactt ccaggcgctg tggggtcagg cgcacattac gctgcgcgca
     7861 gattttttca gcctgcgcta ataactcctg cgttgtggtc ttttccatcg ggcacctcaa
     7921 agtgggggtt aagaatgtcc ttactttacc atgttccagg aaaaacaccg agaaccctta
     7981 ttgttgccgt aatgttgatt ttctgttttg taggtaaggt gttatgttgc cttg
//
LOCUS       DADMHM010000178         8004 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.181, whole genome shotgun sequence.
ACCESSION   DADMHM010000178 DADMHM010000000
VERSION     DADMHM010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 8004)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8004)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8004
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.181"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(1..1045)
                     /locus_tag="JN125_003364"
                     /pseudo
     CDS             complement(1..1045)
                     /locus_tag="JN125_003364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416677.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol dehydrogenase family protein"
     gene            complement(1268..1840)
                     /gene="yeiP"
                     /locus_tag="JN125_003365"
     CDS             complement(1268..1840)
                     /gene="yeiP"
                     /locus_tag="JN125_003365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007750416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P-like protein YeiP"
                     /protein_id="HAY8873023.1"
                     /translation="MPRANEIKKGMVLNYNGKLLLVKDIDIQSPTARGAATLYKMRFS
                     DVRTGLKVEERFKGDDIVDTVTLTRRYVDFSYVDGNEYVFMDKEDYTPYTFTKDQIEE
                     ELLFMPEGGMPDMQVLTWDGQLLALELPQTVDLEIVETAPGIKGASASARNKPATLST
                     GLVIQVPEYLSPGEKIRIHIEERRYMGRAD"
     gene            1995..2216
                     /locus_tag="JN125_003366"
     CDS             1995..2216
                     /locus_tag="JN125_003366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HAY8873024.1"
                     /translation="MECRPGCGACCTAPSIFSPIPGMPDGKPANTPCIQLDEQQRCKI
                     FTSPLRPKVCAGLQASAEMCGNSRQQAMT"
     gene            complement(2246..3427)
                     /gene="setB"
                     /locus_tag="JN125_003367"
     CDS             complement(2246..3427)
                     /gene="setB"
                     /locus_tag="JN125_003367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar efflux transporter SetB"
                     /protein_id="HAY8873025.1"
                     /translation="MHNSPAVSSAKSFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTD
                     EVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWN
                     RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGP
                     PLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMQKELPLATGTVEAPRRNRRDT
                     LLLFVICTLMWGSNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFA
                     KRLGKRFLMRVAAVGGVCFYAGMLMAHSPAILLGLQLLNAIFIGILGGIGMLYFQDLM
                     PGQAGSATTLYTNTSRVGWIIAGSVAGIVAEIWNYHAVFWFAMVMIIATLFCLLRIKD
                     V"
     gene            3795..4925
                     /locus_tag="JN125_003368"
     CDS             3795..4925
                     /locus_tag="JN125_003368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fused PTS fructose transporter subunit IIA/HPr
                     protein"
                     /protein_id="HAY8873026.1"
                     /translation="MFQLSVQDIHPGEKAGDKEEAIRQVAAALVQAGNVAEGYVNGML
                     AREQQTSTFLGNGIAIPHGTTDTRDQVLKTGVQVFQFPEGVTWGDGQVAYVAIGIAAS
                     SDEHLGLLRQLTHVLSDDSVAEQLKSATTAEELRALLMGEKQSEQLKLDNEMLTLDIV
                     ASDLLTLQALNAARLKEAGAVDATFVTKAINEQPLNLGQGIWLSDSAEGNLRSAIAVS
                     RAANAFAVDGETAAMLVSVAMNDDQPIAVLKRLADLLLDNKADRLLKADAATLLALLT
                     SDDAPTDDVLSAEFVVRNEHGLHARPGTMLVNTIKQFNSDITVTNLDGTGKPANGRSL
                     MKVVALGVKKGHRLRFTAQGADAEQALKAIGDAIAAGLGEGA"
     gene            4925..5863
                     /gene="fruK"
                     /locus_tag="JN125_003369"
     CDS             4925..5863
                     /gene="fruK"
                     /locus_tag="JN125_003369"
                     /EC_number="2.7.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase"
                     /protein_id="HAY8873027.1"
                     /translation="MSRRVATITLNPAYDLVGFCPEIERGEVNLVKTTGLHAAGKGIN
                     VAKVLKDLGIDVTVGGFLGKDNQDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGE
                     VTDFNFSGFEVTPADWERFVTDSLSWLGQFDMVCVSGSLPSGVSPEAFTDWMTRLRSQ
                     CPCIIFDSSREALVAGLKAAPWLVKPNRRELEIWAGRKLPEMKDVIEAAHALREQGIA
                     HVVISLGAEGALWINASGEWIAKPPSVDVVSTVGAGDSMVGGLIYGLLMRESSEHTLR
                     LATAVAALAVSQSNVGITDRPQLAAMMARVDLQPFN"
     gene            5880..7571
                     /gene="fruA"
                     /locus_tag="JN125_003370"
     CDS             5880..7571
                     /gene="fruA"
                     /locus_tag="JN125_003370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIBC"
                     /protein_id="HAY8873028.1"
                     /translation="MKTLLIIDANLGQARAYMAKTLLGAAARKAKLEIIDNPNDAEMA
                     IVLGDSIPNDSALNGKNVWLGDISRAVAHPELFLSEAKGHAKPYTAPVAATAPVAASG
                     PKRVVAVTACPTGVAHTFMAAEAIETEAKKRGWWVKVETRGSVGAGNAITPEEVAAAD
                     LVIVAADIEVDLAKFAGKPMYRTSTGLALKKTAQELDKAVAEATPYEPAGKAQTATTE
                     GKKESAGAYRHLLTGVSYMLPMVVAGGLCIALSFAFGIEAFKEPGTLAAALMQIGGGS
                     AFALMVPVLAGYIAFSIADRPGLTPGLIGGMLAVSTGSGFIGGIIAGFLAGYIAKLIS
                     TQLKLPQSMEALKPILIIPLISSLVVGLAMIYLIGKPVAGILEGLTHWLQTMGTANAV
                     LLGAILGGMMCTDMGGPVNKAAYAFGVGLLSTQTYGPMAAIMAAGMVPPLAMGLATMV
                     ARRKFDKAQQEGGKAALVLGLCFISEGAIPFAARDPMRVLPCCIVGGALTGAISMAIG
                     AKLMAPHGGLFVLLIPGAITPVLGYLVAIIAGTLVAGLAYAFLKRPEVDAVAKAA"
BASE COUNT         1974 a         1964 c         2187 g         1879 t
ORIGIN      
        1 tattgtgtta aatcgacatc tttaatttgt agtgtcggcg cttgctcatt cagcattaat
       61 gttctggcgg catggcgaaa tgcgcgatcc tgcatgcaat cactgatatg ggcgaatcct
      121 gaaaggtaac ccagataagc gagaaaagag tggctgccat taagcatacg cagtttcatc
      181 tcttcccatg gcaggacaca ttcaccattt gtacacctgc gacttcccag gcaggacgcc
      241 cagcgacgaa gttatcttcc accacccact ggataaacgg ttcgcagcta atcgcgcagg
      301 gatcatttac ccccagatgc tggctgattt ctgccagtga ttcgtcggtt gcagccggaa
      361 caatgcggtc gaccatggtt cccggaaaac tgacgtgttc ttttatccac ccggcgagtt
      421 ctggcgaacg tttttctgcc attcccagca ccgcgttttt caccacatgg ccattgtcgg
      481 gaatattgtc gcaggagagc acggtaaacg gtgtaaggcc gcgctcacgg cggcgtttca
      541 gtgcttcgac gagaataccc ggtgcggagt gaggttcttc aggggtttgt agatcgtgaa
      601 taatccgcgg attactggtg tcgagtgcac cggtggccgg gtcaatacaa tagccttttt
      661 cggtaatcgt cagggaaaca attgtcacct gtggctcgca aaatttctca ataattgccg
      721 ctaaggaatc cagttttgca ttaaggcatt cgtgaacggc accgacaatt atcacctgat
      781 tgccgtccgc acctttctcc agcacggtat ataaatggtt ctgtgcgcgg agctggctca
      841 tcagttgatc accgctgaac aagctgattt cacagatccc ccagtcgccg ccctgggcat
      901 tcagcacacg atcggtcagt aacgcctgat gagcgcggtg aaaggcgcca aagccaaaat
      961 gaacgatacg tgattgcaac tgctggcgat cgtagcgtgg agcgtgtaca tgatgcggga
     1021 gcgtaacgga ggcaattgtc ttcataggag tcacgtctta gtaacgataa attaacaatg
     1081 acagtgtaaa gttatatgac agcaattgaa attggtctgg attgttaatg cgatgaagtg
     1141 tgagggcgat caatcaacga gtgaaaattg agggcgtaag gtgttcagga agcgcaaaat
     1201 agaagattgg tataataaat taaaaaaggg acagcctgag ctatcccttt tctgcatgcg
     1261 gctgaagtta gtcagcacgc cccatataac ggcgttcttc gatatggata cgaatttttt
     1321 cgcccgggct taagtattct ggtacctgaa tcaccagacc agtgctcaat gtcgccggtt
     1381 tgttacgggc gctggcagat gcccctttga tgcctggtgc ggtttcaacg atttccagat
     1441 caacggtctg cggcagctca agcgccagca gttgaccgtc ccaggtcagc acctgcatgt
     1501 ccggcatgcc gccctctggc ataaacagca actcttcttc aatctgatct ttggtgaagg
     1561 tatacggggt atagtcttct ttatccataa agacatattc gttgccatcg acataggaga
     1621 agtcaacgta acggcgggtc agcgtcacgg tgtcaacgat atcatcacct ttgaaacgct
     1681 cttctacttt cagcccggta cggacatcag aaaaacgcat tttgtacagc gtagcggcac
     1741 cgcgggcagt gggcgactga atatcaatat ccttaaccag cagcagtttg ccgttgtaat
     1801 tcagtaccat acctttttta atttcgttcg ctcttggcat cgaaaaattc ctgtagtcga
     1861 aaatgtcaaa aatatcgcga caaagtactc gcgacgggcc tttcgggcaa gtggtattcg
     1921 cacttttgct ggtgcaaaaa aggtggtact gtgcgcgctc atcaatccgg tggttaacct
     1981 taagagaaca acgtatggaa tgccgtccgg gttgcggggc gtgttgcact gccccttcaa
     2041 ttttcagccc tattcccggt atgccagatg gcaagcccgc caatacgccc tgcattcagc
     2101 ttgatgaaca gcaacgctgt aaaattttca cctcgccact gcgaccgaaa gtctgtgcag
     2161 gcttacaagc cagcgctgaa atgtgcggta actcgcgtca gcaggccatg acctagctta
     2221 tcgatctgga aatgctgacc gcgtcttaaa catctttaat ccgcagtaag caaaacagag
     2281 tggcgataat catcaccatc gcaaaccaga acacagcgtg ataattccag atctcggcga
     2341 cgatgcccgc cactgatcct gcgatgatcc agcccacgcg cgacgtgttg gtatagagcg
     2401 tggtggctga acctgcctga ccgggcatca aatcctgaaa atagagcatc ccgatgccgc
     2461 ccagaatgcc aataaaaata gcatttagca gctgcaagcc caacagaatg gcaggtgaat
     2521 gcgccatcag cattcctgcg taaaaacaga cgccacccac ggcagcaacg cgcattaaga
     2581 aacgcttacc cagacgtttg gcgaaatatc cggcaatcaa catcgtcggg atttccagcc
     2641 cggcggcggt ccccatcatc acaccggcca gtttctcggg aagatgcagt tcgttgataa
     2701 taaatagcgg catgttgatg atgtacaggc tgttcgagcc ccacatcaat gtacaaatga
     2761 caaacagcag tagcgtatcg cgacggttac ggcgcggcgc ttcaaccgtg ccggtcgcca
     2821 gcggaagctc tttttgcatc gacggtaaaa acagccacac catcacgccg caaacaataa
     2881 acgctaccgc tgcgctcaga tacattaccg taaagctgaa acccatcgct aacgcataag
     2941 ccagcggtgg gccaatgacc catgccagtg aaacctgagc gcgtaaaaaa gagctgaaca
     3001 tcaccgcctc acgtccggtt ttgtcggcat gttcacgggc aagggcaaac atttgcgggt
     3061 tagcggtcga gccaaagctg ctaagaaaga cgccaacgaa tagcaaaaca aagtagttgc
     3121 gattccaggc aaaaagggtg caggccagca cgcctaacag gcagcaaaag acaatcagcg
     3181 atttgcgatc gccgcgctta tcagagcgcc cagcgagaaa ctgacttacc agaatcccaa
     3241 tgacagcgct gccggtaaag aagaatccca ccatcgccgg acgggcatgt acttcatcgg
     3301 taaggaaaat actgagtgtc ggggtttgca gagcacccgc aataccggtg agaaaggcaa
     3361 cgattaaaaa cgccgtcgag gtcaggtcaa acgatttcgc gctggagact gcaggggagt
     3421 tatgcatgca ggtctatcac tggaagagga agacgcggag tttacgctgc ttgtcagaaa
     3481 ataaacagac agcgaaatca aaagcgccac gaataatcaa aatgccattt cactgttgct
     3541 gattggctgc tgacgctgct gaaatgaaat tgctgataac ggattttccc atcagcaatt
     3601 aggaaaaatg acaaaaaaat gtgcagcaca tcaaactttt gctcataact ttacggcttt
     3661 ccttgcgtgc tgaaacagaa gtattatgct ttcttgaaac gtttcagcgc gatcttgtct
     3721 ttaaccctaa gccaggttgg cgcttttttt ctcatagagg ctgaatcgtt tcaattcagc
     3781 aagagaggag aactatgttc cagttatccg tacaggacat ccatccgggc gaaaaggccg
     3841 gagacaaaga agaggcgatt cgccaggtcg ctgcggcgct ggtgcaggcc ggtaatgtag
     3901 cagaaggcta cgtcaatggc atgctggcgc gcgaacagca aacctcaacg ttcctcggca
     3961 atggtattgc tattccacac ggcactaccg acacccgcga tcaggtgctg aaaaccggcg
     4021 ttcaggtatt tcagttcccg gaaggcgtca cctggggtga tggtcaggta gcgtacgtgg
     4081 caatcggtat tgctgccagc tcggatgaac atctgggcct gctacgccag ctgacccacg
     4141 tactgagcga tgattccgtt gctgaacaac tgaagtcagc aacaacagca gaagaacttc
     4201 gcgcattact gatgggcgaa aagcagagtg agcagctgaa gctcgacaac gaaatgctga
     4261 cgctggatat cgtcgccagc gatctgctga ctcttcaggc gctgaacgct gcgcgtctga
     4321 aagaggcggg ggcagttgac gccactttcg tcaccaaagc catcaatgaa caaccgctga
     4381 atctcggaca gggtatctgg ctgagcgata gcgccgaagg caatctgcgt agcgcgattg
     4441 cggtaagccg tgcggcaaat gcttttgctg tggacggcga aacggcagcc atgctggtga
     4501 gtgtggcgat gaatgacgat cagcccatcg cggttcttaa gcgtctcgct gatttattgc
     4561 tcgacaataa agctgaccgc ttgctgaaag cagatgcggc aacgttgctg gcgctgctga
     4621 ccagcgatga tgcgccgacc gacgacgtgt taagcgcgga gtttgtggtg cgcaatgaac
     4681 acggcctgca tgctcgtcca ggtaccatgc tggtcaatac cattaaacaa tttaacagtg
     4741 atattaccgt gacaaacctt gatggcaccg gcaaaccggc aaacggacgt agtctgatga
     4801 aagttgtggc acttggcgtt aagaaaggtc atcgcctacg ctttaccgcc cagggtgcag
     4861 atgctgaaca ggcgctgaaa gccattggcg acgctatcgc tgctggtctt ggggagggcg
     4921 cataatgagc agacgtgttg ctacgatcac ccttaatccg gcttatgacc ttgttggttt
     4981 ctgcccggaa attgaacgcg gcgaagtgaa cctggtgaaa accaccggtc tgcatgcggc
     5041 gggtaaaggc atcaacgtgg ccaaagtatt aaaagacctg ggaattgatg tcaccgttgg
     5101 cggcttcctg ggtaaagaca atcaggatgg ttttcagcaa ctgttcagcg agctgggcat
     5161 tgccaaccgt ttccaggttg tacaggggcg cacccgaatt aacgttaagc tgacggaaaa
     5221 agacggcgaa gtgaccgact tcaacttctc gggttttgaa gtcacccccg ccgactggga
     5281 acgctttgtg actgattctc tgagctggct cggtcagttc gatatggtct gtgtcagcgg
     5341 aagcttaccg tcaggcgtca gcccggaagc gttcaccgac tggatgactc gcctgcgtag
     5401 tcagtgtcct tgcattatct ttgatagtag ccgtgaagcg ttagtagcag gtttgaaagc
     5461 ggcaccgtgg ctggtgaaac ctaaccgccg cgagttggaa atctgggcag gccgtaaact
     5521 gcctgaaatg aaagatgtga ttgaagctgc acatgcgcta cgtgaacaag gtattgcgca
     5581 tgttgttatt tcactgggtg ccgaaggcgc gctttggatt aatgcctccg gcgaatggat
     5641 cgccaaacca ccgtcagtcg atgtcgtaag caccgttggc gcaggggatt ctatggttgg
     5701 tggcctgatt tatggcttgc tgatgcgtga atccagtgaa cacacactgc gtctggcgac
     5761 agctgttgca gccctggcgg taagtcaaag caatgtgggt attaccgatc gtccgcagtt
     5821 ggccgcaatg atggcgcgcg tcgacttaca accttttaac tgacagcagg agaggcataa
     5881 tgaaaacgct gctgattatt gacgctaatc tcggtcaggc acgcgcctat atggcgaaga
     5941 ccctgctggg cgcggcggcg cgaaaagcaa aactggaaat catcgacaat ccgaacgacg
     6001 cagaaatggc gattgttctc ggtgattcca tcccgaatga cagcgcgctg aacggtaaaa
     6061 atgtctggct gggtgatatt tcccgggcag ttgcgcaccc tgagctgttc ctgagtgaag
     6121 ccaaaggcca tgcgaaacct tacactgcgc cggtcgctgc gacagcaccg gttgctgcca
     6181 gcggtccgaa acgcgtagtt gcggtgactg cttgcccgac tggcgtagca cacaccttta
     6241 tggcggctga agccattgaa accgaagcga aaaaacgtgg ctggtgggtg aaagttgaaa
     6301 cccgtggttc tgttggcgcg ggcaatgcaa tcacccctga agaagtcgca gcagcggatc
     6361 tggtgattgt ggcggcagat atcgaagtgg atctggcgaa atttgctggt aaaccgatgt
     6421 atcgtacctc taccggtctg gcgctgaaga aaaccgcgca ggaactggat aaagcggttg
     6481 ctgaagcaac gccgtatgaa ccggcgggca aagctcaaac ggcgaccact gaaggtaaga
     6541 aagagagtgc aggcgcttac cgtcacttgc taacaggcgt ctcttatatg ctgccgatgg
     6601 tcgtcgcagg tggtctgtgt atcgcgcttt cttttgcttt tggtatcgaa gcgtttaaag
     6661 agccgggtac gttggcagcg gcgctgatgc agattggcgg tggttcagcc tttgcgctga
     6721 tggtgccggt actggcaggt tatattgcct tctccattgc cgatcgtccg ggcctcacgc
     6781 cgggtctgat tggcggtatg ctggcggtca gcaccggttc tggctttatt ggcggtataa
     6841 ttgctggctt cctggctggt tacattgcga agttaatcag tacgcaactg aaactgccac
     6901 agagtatgga ggcgctgaaa ccgatcctga tcattccgct aatttccagt ctggtggtcg
     6961 gtctggcgat gatctacctg atcggtaaac cagttgctgg cattctcgaa gggctgactc
     7021 actggctgca gaccatgggg actgcgaatg cggttctgct gggggcgatc ctcggtggca
     7081 tgatgtgtac tgacatgggc ggtccggtaa acaaagcagc gtacgcattc ggtgtgggtc
     7141 tgctgagtac tcaaacctat ggcccgatgg cggcgattat ggcggcaggt atggtgccac
     7201 cgctggcaat gggtctggca acaatggtgg cgcgtcgcaa attcgacaaa gcgcagcagg
     7261 aaggtggcaa agccgctctg gtattgggac tgtgcttcat ttcggaaggt gcaattccgt
     7321 ttgctgctcg tgatccgatg cgtgtgctgc cgtgctgtat cgtgggtggg gcgctgactg
     7381 gcgcaatctc aatggcgatt ggtgcgaaac tgatggcacc gcacggtggt ctgtttgttc
     7441 tgctgatccc tggcgctatt acgccggtac tgggttacct ggtagcaatt attgccggta
     7501 cgctggtggc gggtttggcc tatgccttcc tgaaacgtcc ggaagtggac gcagtagcga
     7561 aagcagcgta ataaaaggtg tgttacaggg cagaaatttc ctgccctgta acatttgatg
     7621 agcgcaaaga gaatgaccgg tttgtgaatg taattttatg aatttaaatg gttttatctt
     7681 tcagtagaaa cttgaaacgt tcatcaaaca ctaaggttat ttcctcaagg gcagattatt
     7741 ttctgccttt tttattgttc ccgttctgtg catcccgtca caaattcctc gcttttgtaa
     7801 ttcaggcatt taatcgcatt ttgtgagcct gctcaaatct gcccattttg cctctctggc
     7861 ggtaatttac tttacgtaaa acatgcatgc tatgagcaca tgtttaaata tgaacacatg
     7921 tttaaaccgt ctttgcagta tctatattct tgtggattga cagggttggt aattttttac
     7981 cagaggatgt gctatgcgcg aaaa
//
LOCUS       DADMHM010000179         7911 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.182, whole genome shotgun sequence.
ACCESSION   DADMHM010000179 DADMHM010000000
VERSION     DADMHM010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7911)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7911)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7911
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.182"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            52..936
                     /locus_tag="JN125_003371"
     CDS             52..936
                     /locus_tag="JN125_003371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707334.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-hexose-6-phosphate mutarotase"
                     /protein_id="HAY8873029.1"
                     /translation="MIKKIFALPVIEQISPVLSRRKLDELDLIVVDHPQVKASFALQG
                     AHLLSWKPAGEEEVLWLSNNTPFKNGVAIRGGVPVCWPWFGPAAQQGLPAHGFARNLP
                     WTLKSHHEDADGVALTFELTQSEETKKFCPHDFTLLAHFRVGKTCEIDLESHGEFETT
                     SALHTYFNVGDIAKVSVSGLGDRFIDKVNDAKEDVLTDGIQTFPDRTDRVYLNPQDCS
                     VINDEALNRIIAVGHQHHLNVVGWNPGPALSISMGDMPDDGYKTFVCVETAYASETQK
                     VTKEKPAHLAQSIRVAKR"
     gene            complement(987..1841)
                     /gene="yeaE"
                     /locus_tag="JN125_003372"
     CDS             complement(987..1841)
                     /gene="yeaE"
                     /locus_tag="JN125_003372"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal reductase YeaE"
                     /protein_id="HAY8873030.1"
                     /translation="MQQKMIQFSGDVSLPAIGQGTWYMGEDASQRKTEVAALRAGIEL
                     GLTLIDTAEMYADGGAEKVVGEALTGLRDNVFLVSKVYPWNAGRQKAINACEASLCRL
                     NTDYLDLYLLHWSGSFAFEETVAAMEKLIAQRKIRRWGVSNLDYADMQELWQLPGGNQ
                     CATNQVLYHLGSRGIEYDLLPWCQQQQMPVMAYSPLAQAGRLRNGLLKNAVVNEIAHA
                     HNISSAQVLLARVISHQGVMAIPKAATIAHVQQNAAVLEVELSSAELTMLDKAYPAPK
                     GKTALDMV"
     gene            complement(1931..2677)
                     /locus_tag="JN125_003373"
     CDS             complement(1931..2677)
                     /locus_tag="JN125_003373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MltA-interacting protein"
                     /protein_id="HAY8873031.1"
                     /translation="MTKLKLLALGVLIATSAGVAHAEGKFSLGAGVGVVEHPYKDYDT
                     DVYPVPVINYEGDNFWFRGLGGGYYLWNDATDKLSITAYWSPLYFKAKDSGDHQMRHL
                     DDRKSTMMAGLSYAHFTQYGYLRTTLAGDTLDNSNGIVWDMAWLYRYTNGGLTVTPGI
                     GVQWNSENQNEYYYGVSRKESARSGLRGYNPNDSWSPYLELSASYNFLGDWSVYGTAR
                     YTRLSDEVTDSPMVDKSWTGLISTGITYKF"
     gene            3113..5046
                     /gene="yeaG"
                     /locus_tag="JN125_003374"
                     /pseudo
     CDS             3113..5046
                     /gene="yeaG"
                     /locus_tag="JN125_003374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310519.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="protein kinase YeaG"
     gene            5159..6442
                     /locus_tag="JN125_003375"
     CDS             5159..6442
                     /locus_tag="JN125_003375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeaH/YhbH family protein"
                     /protein_id="HAY8873032.1"
                     /translation="MTWFIDRRLNGKNKSMVNRQRFLRRYKAQIKQSISEAMNKRSVT
                     DVDSGESVSIPTEDISEPMFHQGRGGLRHRVHPGNDHFVQNDRIERPQGGGGGSGSGQ
                     GQASQDGEGQDEFVFQISKDEYLDLLFEDLALPNLKQNQQRQLTEYKTHRAGYTANGV
                     PANISVVRSLQNSLARRTAMTAGKRRELHALEENLAIISNSEPAQLLEEERLRKEIAE
                     LRAKIERVPFIDTFDLRYKNYEKRPDPSSQAVMFCLMDVSGSMDQSTKDMAKRFYILL
                     YLFLSRTYKNVEVVYIRHHTQAKEVDEHEFFYSQETGGTIVSSALKLMDEVVKERYNP
                     AQWNIYAAQASDGDNWADDSPLCHEILAKKLLPVVRYYSYIEITRRAHQTLWREYEHL
                     QSTFDNFAMQHIRDQDDIYPVFRELFHKQNATAKD"
     gene            6589..>7911
                     /locus_tag="JN125_003376"
     CDS             6589..>7911
                     /locus_tag="JN125_003376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HAY8873033.1"
                     /translation="MIQSTRISMGLFFKYFLSLTKIDPGQNYISLPSIKSSTHIALLF
                     MVSMGTQKLKAQSFFIFSLLLTLILFCITTLYNENTNVKLIPQMNYLMVVVALFFLNA
                     VIFLFMLMKYFTNKQILPTLILSLAFLSGLIYLVETIVIIHKPINGSTLIQTKSNDVS
                     IFYIFRQLSFICLTSLALFCYGKDNILDNNKKKTGILLLALIPFLVFPLLAHNLSSYN
                     ADYSLYVVDYCPDNHTATRGINYTKILVCLWAFLLFFIIMRTRLASELWPLIALLCLA
                     SLCCNLLLLTLDEYNYTIWYISRGIEVSSKLFVVSFLIYNIFQELQLSSKLAVHDVLT
                     NIYNRRYFFNSVESLLSRPVVKDFCVMLVDINQFKRINAQWGHRVGDKVLVSIVDIIQ
                     QSIRPDDILARLEGEVFGLLFTELNSAQAKIIADRIRKNVELLTGFSNR"
BASE COUNT         2089 a         1900 c         1836 g         2086 t
ORIGIN      
        1 cttcggtcgc tctttttttt acctgataaa atgaagttaa aggactgcgt catgattaag
       61 aaaatttttg cccttccggt catcgaacaa atctcccctg tcctctcccg tcgtaaactg
      121 gatgaactgg acctcattgt ggtcgatcat ccccaggtaa aagcctcttt tgcattacag
      181 ggcgcacacc ttctctcgtg gaaacctgcg ggtgaagaag aagttctgtg gttgagcaac
      241 aacacaccgt tcaaaaatgg cgtcgctatt cgcggtggcg taccggtttg ctggccgtgg
      301 tttggtccgg cggcacaaca aggtctgcct gcgcacggtt ttgcccgcaa cctgccgtgg
      361 acgctgaaat cacatcatga agatgctgat ggcgtagcgc tgacttttga attgacgcaa
      421 agcgaagaga cgaaaaaatt ctgtccgcac gactttacgc tgttagcgca tttccgcgtg
      481 ggtaaaacct gtgaaatcga tcttgaatca catggcgaat ttgaaaccac ctctgccctg
      541 catacctact ttaacgtggg tgatatcgct aaggtaagcg tcagtgggct gggcgatcgc
      601 ttcattgata aagtgaatga cgcgaaagaa gatgtactga ccgacggtat tcagaccttc
      661 cctgaccgta ccgatcgcgt gtatctgaat ccgcaagatt gcagcgtgat taatgatgaa
      721 gcgctgaatc gtattatcgc cgtaggccac cagcatcatc tgaacgttgt aggctggaac
      781 ccgggaccgg cgctttcaat tagtatgggc gatatgccgg atgatggcta caaaacattt
      841 gtttgtgtag aaacggctta cgcttcagaa acgcaaaaag tcaccaaaga gaaacctgca
      901 catctggcgc aatccattcg cgttgcgaaa cgttaatttg cgttaatgtt gtgtgccggg
      961 tgcgatgcat ccggcacgta tcaacatcac accatatcca gcgcagtttt tccttttggt
     1021 gccggatacg ctttatccag catggttaat tccgctgacg aaagttcgac ctcaagcaca
     1081 gccgcattct gttgaacatg ggcaatcgtg gccgcttttg gaatcgccat cacaccctga
     1141 tggctgatta ccctcgccaa caatacttgt gccgagctga tattgtgagc atgtgcaatt
     1201 tcgttgacta ccgcgttttt taacagtcca ttgcgcaacc gcccggcctg ggctaatgga
     1261 ctgtaagcca tcaccggcat ctgctgttgc tggcaccagg ggagtagatc gtactcaatc
     1321 cctcgtgaac cgagatggta aagcacctga ttagtggcac actgatttcc ccccggcagc
     1381 tgccagagtt cctgcatatc agcataatca aggttagaaa cgccccagcg gcggattttt
     1441 ctctgggcga tcaatttttc catcgctgca acagtctctt caaaagcgaa actgccagac
     1501 cagtgtaata agtagagatc gagataatca gtattgagac ggcataaact ggcttcgcat
     1561 gcatttatcg ctttttgcct gccagcattc cacggataga ctttagagac gagaaagacg
     1621 ttatcacgca gaccggttaa tgcttcccca accacctttt cggcaccgcc atcggcatac
     1681 atttcggcgg tatcaatgag ggttaaaccg agctcaatgc ccgcgcgtag tgcagcaact
     1741 tctgttttgc gctgactggc atcttcgccc atataccatg ttccctgccc tatggctggc
     1801 agtgagacat cgccactaaa ttgaatcatt ttttgttgca ttgtttcctc ccaggtattg
     1861 caccaccgta atgcaaaaca aggcgtgacg ccctgttttt atgcacaaaa tgccctggaa
     1921 agatgcatta tcagaatttg taggtgatcc cggtagaaat caggccagtc caggatttat
     1981 ccaccatcgg gctgtcagta acttcatcag acagacgggt atagcgcgcg gtaccgtaaa
     2041 cactccagtc gccgaggaag ttgtagctgg cgctcagctc caggtaaggg ctccagctgt
     2101 cgttcgggtt atagccacgc agaccgctgc gagcggactc tttgcgcgat acgccataat
     2161 agtattcgtt ctggttttcg ctgttccact gcacaccaat acccggagtc acggtcaggc
     2221 caccgttggt gtaacgatac aaccaggcca tatcccagac aatgccgttg ctgttatcca
     2281 gggtatcgcc agccagggtg gtacgcaggt aaccgtactg ggtaaagtga gcataagaca
     2341 gaccagccat catggtgctc ttacggtcat ccaggtgacg catttggtga tcgccactgt
     2401 ctttcgcttt gaagtaaagc ggcgaccagt aagcggtaat tgaaagttta tctgttgcgt
     2461 cattccacag gtagtaacca ccacctaagc cacggaacca gaagttatcg ccttcatagt
     2521 tgattaccgg tactgggtaa acatcggtat cgtaatcttt atatgggtgc tcaacgacac
     2581 ctacgcctgc gcccaaggaa aatttacctt cagcgtgcgc tacgcctgca gacgttgcga
     2641 taagcactcc aagtgccaga agtttgagtt tggtcacaat taatcattcc ttaaacaaat
     2701 gtttagcggg cgacaaagtt tacccgtcaa tacatcgaaa cccaaccttt ttacgttttc
     2761 attttttaaa gtaactgttt aattttcctg ccgcggatga caccgcgctt acagccaaat
     2821 gaatttagcg ttactggcga gcctggtctt tacattaatt atgcaaaatt tatggatgag
     2881 ttgttgatat gccattgaaa ttaagaaagc cgtgcaggca agttttccat ttgccatcta
     2941 cgcttaattt tgaaggtgta tcaccgggca cgttgttctc atcgtcgata aaatggcatg
     3001 agagttgctg tgttttagca agagacgtcg ttcagtttac ctcttccggg agcctctact
     3061 attcatatga acggctctta acctgtgcta aaaaacgaaa ggacggcata ccatgaatat
     3121 attcgatcac tatcgccagc gatatgaagc tgccaaggac gaagagttca cactgcagga
     3181 gtttcttacc acttgtcggc aagatcgcag tgcttatgcc aacgcggctg agcggctatt
     3241 gatggctatc ggtgagcctg tcatggtcga tacagcccag gaacccagac tttctcgact
     3301 cttttctaac cgggtcattg cacgttatcc ggcgtttgaa gagttttacg gcatggaaga
     3361 cgcgattgaa cagattgtct cttatctgaa acacgcggct caggggctgg aagagaagaa
     3421 acaaatcctg tatctgctgg ggcctgtggg tggggtaaat catcgcttgc tgagcgactg
     3481 aaatcattaa tgcagctcgt accgatttat gtattgagcg ccaacggtga gcgtagcccg
     3541 gtcaacgatc atccgttctg tcttttcaat ccgcaggaag atgcgcagat tctggaaaaa
     3601 gagtatggca ttcctcgccg ttatctcggc accatcatgt cgccgtgggc ggcaaaacgc
     3661 ctgcatgaat ttggtggcga tatcactaag ttccgggtag tgaaggtctg gccgtcaatt
     3721 ctgcaacaaa ttgctatcgc caaaacggaa cccggcgatg agaacaacca ggacatctcc
     3781 gcgctggttg ggaaagtcga tattcgtaaa ctcgaacact acgcgcagaa tgacccggac
     3841 gcctacggct attccggtgc gctgtgccgc gccaatcagg ggatcatgga attcgttgag
     3901 atgtttaaag caccgataaa agtgctgcat cccttgttaa ccgccactca ggaaggtaac
     3961 tacaacggga cggaaggtat ctccgccctg ccgttcaacg ggattattct cgcccactcg
     4021 aacgagtccg aatgggtcac tttccgtaat aacaaaaaca acgaagcctt cctcgaccgt
     4081 gtttacatcg tgaaggtgcc gtattgcttg cgcatttccg aagagatcaa aatctacgag
     4141 aaattgctta atcacagtga attgactcac gccccatgcg cccctggcac gctggaaaca
     4201 ctgtcacgtt tttccattct ttcgcgcctg aaagagccag aaaactccag catttattca
     4261 aagatgcggg tttatgatgg cgaaagtctg aaagacaccg atcccaaagc caagtcgtat
     4321 caggaatatc gtgactacgc cggtgtcgat gaagggatga acggtctgtc gacgcgtttt
     4381 gcgtttaaga tcctctcccg cgtgttcaac ttcgatcatg tagaagtggc ggcaaacccg
     4441 gtccatctgt tctacgtcct ggaacagcag atcgagcgcg agcagttccc gcaagagcag
     4501 gcagaacgct atctggagtt cctgaaaggt tatctgatcc cgaaatatgc cgagtttatc
     4561 ggcaaagaga tccagacggc ctaccttgaa tcctattccg aatatgggca aaacattttc
     4621 gaccgttatg ttacctacgc ggatttctgg attcaggatc aggagtatcg cgatccggat
     4681 accgggcagc tgtttgaccg cgagtctctt aacgccgagc tggagaaaat cgagaaaccg
     4741 gcggggatca gtaatccaaa agatttccgc aacgagattg ttaacttcgt actgcgcgcc
     4801 agagcgaata acagcggacg caatccgaac tggaccagct atgaaaaact gcgcacggtt
     4861 atcgagaaga aaatgttctc caataccgag gagctgttgc cggttatctc gtttaacgcc
     4921 aaaacgtcaa ccgacgagca gaagaaacac gacgactttg tcgaccgtat gatggaaaaa
     4981 ggctacaccc gtaaacaggt gcgtttactg tgcgaatggt atttgcgcgt acgtaaatcg
     5041 tcttaacaac cctggcccgg tacacatgct accgggccta caacgacagc gaaccgtggg
     5101 ccagagaaat ggcaacacag gcgtagcata cagttggcaa atgtagtacg gggggcatat
     5161 gacctggttt attgaccggc gtctgaacgg caaaaacaaa agcatggtga atcgccagcg
     5221 ttttttacgc cgttataaag cgcaaattaa acagtcgatc tccgaggcca tgaataagcg
     5281 ttcggtgact gacgtagaca gcggcgaatc cgtatccatt cccacggaag atattagcga
     5341 accgatgttt catcaggggc gtggcggcct gcgccaccgc gtacatccgg gcaatgacca
     5401 tttcgtccag aacgaccgaa ttgaacgtcc ccagggtggc ggcggaggtt ccggcagtgg
     5461 tcagggccag gccagccagg atggtgaagg tcaggatgaa tttgtctttc agatttcgaa
     5521 agatgagtat cttgatctgc tctttgaaga tttggcctta ccgaatctga aacaaaacca
     5581 acaacgccag ctgaccgaat ataaaacgca tcgggcgggt tataccgcta acggcgttcc
     5641 agccaatatc agcgttgtgc gttccttgca gaactcactg gcgcgacgca cagccatgac
     5701 ggcgggcaag cgacgggaac ttcatgcgct ggaagagaat ttggccatca tcagcaacag
     5761 tgaacctgcg caactgctgg aagaggaacg tctgcgcaaa gaaattgcag aattacgtgc
     5821 caaaattgaa cgcgtccctt ttattgacac cttcgattta cgttacaaga actacgagaa
     5881 gcggcccgat ccctccagcc aggcagtgat gttttgcctg atggacgttt ccggttcaat
     5941 ggatcaatcc actaaagata tggctaagcg tttttatatt ctgctgtatc tgttcctcag
     6001 cagaacgtat aagaacgtgg aagtcgtata catccgccat catacccaag cgaaagaagt
     6061 cgatgaacat gagtttttct actcgcagga aacaggcggc accattgttt ccagcgccct
     6121 gaaactgatg gatgaggtag tgaaagagcg ttataacccg gcacagtgga atatttacgc
     6181 tgcacaagca tcggacggcg ataactgggc cgatgactct ccgctttgcc atgaaatcct
     6241 ggcgaaaaaa ttattacctg ttgttcgtta ttacagctat atcgaaatta cccgtcgtgc
     6301 acatcagaca ttgtggcgag aatatgagca tctgcaatct actttcgaca actttgcgat
     6361 gcagcacatc cgcgaccagg atgatattta tccggtgttc cgtgaactgt ttcataaaca
     6421 aaatgcaaca gctaaagact aaaactatca gccaggtcat tatcgcctgg ctgattttta
     6481 gcttactgta aattatctca tttattacat acattagctt acaatcgctt taaatatgac
     6541 agcataacct ttacataatt tagttccaga aaacaatcat tcggaaaaat gattcagtca
     6601 acacgtattt ccatggggtt attctttaaa tattttttat cgttgacgaa aattgatcct
     6661 ggtcaaaact atatatctct gccatcaata aaatccagca ctcacattgc tctccttttt
     6721 atggtttcta tgggtacaca aaaattaaaa gctcaaagct tttttatttt cagtttattg
     6781 ctgacattaa ttttattttg cattactacc ttatataacg aaaacacaaa tgtaaaactc
     6841 atcccacaga tgaattacct gatggttgtt gtggctttgt ttttccttaa cgccgtcatt
     6901 tttcttttca tgttaatgaa atatttcact aacaaacaaa ttttaccaac actcatttta
     6961 agccttgcat tcttaagtgg ccttatctat ttagttgaaa ccattgtaat tatccataaa
     7021 ccaattaacg gcagtacact gatccagaca aagtcgaatg atgtttctat tttctatatt
     7081 ttccgccaac tcagttttat ttgtttaacc tcgctggcac tcttttgtta tggaaaagac
     7141 aacatccttg acaacaataa gaaaaaaacg ggaatcctgt tgctggcgtt gattcctttt
     7201 ttagtttttc cccttctggc acacaatctg agcagttata acgctgacta ttctttgtat
     7261 gtcgtcgact actgtccgga caaccatact gcgaccaggg gaatcaacta tacaaaaata
     7321 ttggtttgtc tgtgggcatt tttactgttc tttattatca tgcgtacacg attagccagc
     7381 gaactatggc cgttaatagc attattatgt ctggcatcgc tatgctgcaa cttacttcta
     7441 ctgactctgg atgagtataa ttacaccatc tggtatatca gtcgcgggat tgaagtttcc
     7501 agtaaactgt ttgttgtgtc ttttctgatt tataacattt ttcaggagct gcaactctcc
     7561 agcaaactgg cagttcatga tgtgctgacc aatatttata atcggcgcta ctttttcaac
     7621 agcgtagagt cattattgtc gcgacctgtt gttaaggact tctgtgtcat gctggttgat
     7681 attaatcagt tcaaacgcat caatgcccaa tggggacatc gtgtgggtga taaagtgctg
     7741 gtttcaattg tcgatattat ccagcaaagc atccgccctg atgatatttt agcgcgactg
     7801 gagggtgagg tgtttggctt gctatttacc gaactcaata gtgcccaggc aaaaatcatt
     7861 gcggatcgta tacgtaaaaa tgtcgaactc ctgaccggct ttagtaacag a
//
LOCUS       DADMHM010000180         7860 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.183, whole genome shotgun sequence.
ACCESSION   DADMHM010000180 DADMHM010000000
VERSION     DADMHM010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7860)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7860)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7860
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.183"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            140..1738
                     /locus_tag="JN125_003377"
     CDS             140..1738
                     /locus_tag="JN125_003377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma 54-dependent transcriptional regulator"
                     /protein_id="HAY8873034.1"
                     /translation="MRKTVAFGFVGTVLDYAGRGSQRWSKWRPTLCLCQQESLVIDRL
                     ELLHDARSCSLFETLKRDIASVSPETEVVSIEIELHNPWDFEEVYACLHDFARGYKFQ
                     PEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQTSPPRKKEQPRGAGEVTIIDLD
                     LSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTG
                     AGKSFLARRIFELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREG
                     LLRSANGGMLFFDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDL
                     RQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHATLTGDSVRFNTE
                     ARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQES
                     RPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDT
                     DRLRKYLARFGLTWEAVQDQHSSS"
     gene            complement(1720..2478)
                     /locus_tag="JN125_003378"
     CDS             complement(1720..2478)
                     /locus_tag="JN125_003378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000815090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR family transcriptional regulator"
                     /protein_id="HAY8873035.1"
                     /translation="MKQTQRHNGIIELVKQQGYVSTEELVERFSVSPQTIRRDLNELA
                     EQNLILRHHGGAALPSSSVNTPWHDRKATQTEEKERIARKVAEQIPNGSTLFIDIGTT
                     PEAVAHALLNHSNLRIVTNNLNVANTLMVKEDFRIILAGGELRSRDGGIIGEATLDFI
                     SQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVN
                     MGSISMVDAVYTDAPPPVSVMQVLTDHHIQLELC"
     gene            complement(2495..3325)
                     /gene="glpG"
                     /locus_tag="JN125_003379"
     CDS             complement(2495..3325)
                     /gene="glpG"
                     /locus_tag="JN125_003379"
                     /EC_number="3.4.21.105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease
                     GlpG"
                     /protein_id="HAY8873036.1"
                     /translation="MLMITSFANPRVVQAFVDYMATQGVILTIQQHNQSDVWLADESQ
                     AERVRAELARFLENPADPRYLAASWQAGHTGSGLHYRRYPFFAALRERAGPVTWVVMI
                     ACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWY
                     LGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERD
                     PQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSLNARKRK
                     "
     gene            complement(3370..3696)
                     /gene="glpE"
                     /locus_tag="JN125_003380"
     CDS             complement(3370..3696)
                     /gene="glpE"
                     /locus_tag="JN125_003380"
                     /EC_number="2.8.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate sulfurtransferase GlpE"
                     /protein_id="HAY8873037.1"
                     /translation="MDLFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLT
                     NDTLGAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQFPA
                     EVAYGA"
     gene            3886..5391
                     /gene="glpD"
                     /locus_tag="JN125_003381"
     CDS             3886..5391
                     /gene="glpD"
                     /locus_tag="JN125_003381"
                     /EC_number="1.1.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase"
                     /protein_id="HAY8873038.1"
                     /translation="METKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSA
                     SSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPHIAFPMRFRLPHRPHLRPAWMIR
                     IGLFMYDHLGKRTSLPGSTGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLANAQMVV
                     RKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQFFDEGM
                     HLPSPYGIRLIKGSHIVVPRVHTQKQAYILQNEDKRIVFVIPWMDEFSIIGTTDVEYK
                     GDPKAVKIEESEINYLLKVYNAHFKKQLSRDDIVWTYSGVRPLCDDESDSPQAITRDY
                     TLDIHDENGKAPLLSVFGGKLTTYRKLAEHALEKLTPYYQGIGPAWTKESVLPGGAIE
                     GDRDDYAARLRRRYPFLTESLARHYARTYGSNSELLLGNAGAISDLGEDFGHEFYEAE
                     LKYLVDHEWVRRTDDALWRRTKQGMWLNADQQSRVSQWLVEYTQQKLSLAS"
     gene            complement(5443..6048)
                     /locus_tag="JN125_003382"
     CDS             complement(5443..6048)
                     /locus_tag="JN125_003382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000589351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873039.1"
                     /translation="MIRFRLYIPPVILGFVIVSLLVWLTVIVLAVLIFTLTFLAEIIF
                     SFPLLVVRISLQELQLELIVEYALFFSVMAGIGWQFSRRTPPELKNRLHCWLVFSPVY
                     FWLILSNFILYISPEKSALLENIRNFFLTFVWPPLNFSPFWPQPWTDFVGPISAQLGF
                     ALGYYCHWCRKNRNQRKKWGDWVTCLSLAILAQGPLFNYLQ"
     gene            complement(6051..6818)
                     /locus_tag="JN125_003383"
     CDS             complement(6051..6818)
                     /locus_tag="JN125_003383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001182130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873040.1"
                     /translation="MQPSPAMQALIEQIYHTFRRYRVPQKFVVCCEYCLSQQEQKALR
                     STSLRAIPYSLINAWNSSPGPDPQNSDEVRYFLPRLLEFVAQGHFDNIHVVFSLRRIN
                     LANKENWRADERAILQRFACQYMTDWVSGDEAVELQYMLEMFFRADIALAPLLDAINS
                     VPGFWSTVSLACLLNRYCEDYIRDNQDDIDNVITTQINAWARNNHPLLKERARQAIEN
                     PLKQPEPMTEYQVWEDDWIIDECLCAMYDASSESPGK"
     gene            complement(6821..7531)
                     /locus_tag="JN125_003384"
     CDS             complement(6821..7531)
                     /locus_tag="JN125_003384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000424214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873041.1"
                     /translation="MELVNTLFASLAGTDPFTGVDITIANCKSAYWDEGIVQQLINQA
                     LDEGEKFVGADGLEGLLRYDVTLNIGLTSSKVWPGFSLDTATISRLCACGADFGFDPY
                     ISDVPDVQCDLNTTNDVTVQFTAMLNPDERVIIAKRPLKKCDSWIEDVYIFQVFKDAW
                     KFHNNNSLRGFRDKQAALKLYTRHYSVENCAEESCRDCNSCIRPSFSLSRSALIRLNA
                     ATARFVYQPFTRDQRARG"
     gene            complement(7547..>7860)
                     /locus_tag="JN125_003385"
     CDS             complement(7547..>7860)
                     /locus_tag="JN125_003385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001472437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PstS family phosphate ABC transporter
                     substrate-binding protein"
                     /protein_id="HAY8873042.1"
                     /translation="MMEGMIKVVAEYRNTNNAIGYTFRYYATQMNADKNIKLLAINGI
                     APTAENIRNGKYPYIIDAFMVTRENTTSETQKLLEWFLTPQGQSLVEDVGYVPMYKTL
                     P"
BASE COUNT         2021 a         2009 c         1953 g         1877 t
ORIGIN      
        1 tgccagaaaa ttaaataagt aaattaattt tttaattcat tgtttttaaa aagattatat
       61 ctttatgtcc gtaaccggag atttcccgca aagccgattt accgataatg aaatatcgtc
      121 ttttataagg atatctaaga tgcgtaaaac agtagctttt ggctttgtcg gaacggtgct
      181 ggattatgcc gggcgcggca gtcagcgctg gtcaaaatgg cgtccgacac tctgtttatg
      241 ccagcaagaa tcgttggtca tcgatcgact ggaattattg catgacgccc gctcgtgctc
      301 gctatttgaa acgcttaaac gcgatatcgc cagcgtttcg ccagaaacag aagtggtgag
      361 cattgagatt gaactgcata acccgtggga tttcgaagag gtttacgcct gcctgcatga
      421 tttcgcccgt ggttacaagt ttcagccaga aaaagaagac tatttaattc acatcaccac
      481 cggcacccac gtcgcgcaga tttgctggtt tctgctggcg gaagcgcgtt atctacccgc
      541 ccggttgata caaacttcac caccgcgcaa aaaagaacaa ccgcgcggtg ccggtgaagt
      601 gacgattatc gatctcgatc taagccgtta taacgccatc gccagccgct ttgccgagga
      661 acgccagcaa acgcttgatt ttcttaagtc cggcattgcc acgcgtaacc cccacttcaa
      721 ccgcatgatt gagcagattg aaaaagtggc gattaaatcc cgcgcaccga tcctgcttaa
      781 cggcccaacc ggtgcgggaa agtcatttct ggcgcgacgt atatttgaat taaaacaggc
      841 gcggcatcag tttagcggcg cgtttgtgga agtgaactgc gccaccctgc gcggcgatac
      901 cgccatgtcg acgctgtttg gtcatgtgaa aggcgcgttt accggggcgc gggaatctcg
      961 tgaaggttta ttacgcagcg ccaacggcgg aatgttgttt tttgatgaga ttggcgaact
     1021 gggcgcagac gaacaggcaa tgctgctaaa agccattgaa gagaaaacct tttacccgtt
     1081 tggcagcgat cgccaggtga gcagtgattt tcagcttatc gccggaacgg tgcgcgattt
     1141 gcgccagctg gttgccgaag gcaaatttcg cgaagatctg tacgcgcgga tcaatctctg
     1201 gaccttcacc ctgccgggtc tacgccagcg ccaggaagat attgaaccga accttgatta
     1261 tgaagtggag cgccacgcca cactcactgg cgacagcgtg cgttttaaca ccgaagcgcg
     1321 gcgcgcctgg ttggcttttg cgacctctcc ccaggcaaca tggcgcggta actttcgcga
     1381 actttctgcc agcgtcacgc ggatggccac ctttgccact agcggacgca tcactctgga
     1441 cgtggttgaa gatgagataa accgtctgcg ctataactgg caggagagcc gcccctccgc
     1501 gcttacggcg ttgctgggcg cagaggcaga aaacatcgat ctcttcgacc gtatgcaact
     1561 ggaacacgtt atcgctatct gccgccaggc aaagtcgctt tctgcagccg gacgacagct
     1621 ttttgatgtt tcgcgccagg gcaaagccag cgtcaatgac acggatcggc tacgcaaata
     1681 cctggcgcgt tttggtctga cgtgggaagc cgtgcaggat cagcacagct ccagttgaat
     1741 atgatggtcc gtcagcacct gcattacgct tactggcggc ggggcgtcgg tgtagacggc
     1801 atctaccatg ctgatgctgc ccatattgac catcgcgtta cggccaaatt tcgagtgatc
     1861 gacaaccagc ataacgtggc gcgagttctc aataatggcg cgcttggtgc gaacttcgtg
     1921 gtaatcgaac tccagcagcg agccgtcgct atcgatgccg cttatcccca gaatgccgaa
     1981 atcaaggcgg aactgggaga taaaatcgag cgtcgcttcg ccaatgatcc cgccatcgcg
     2041 gctgcgtaat tcgccaccgg cgagaataat gcggaaatct tcttttacca tcaacgtgtt
     2101 agcaacattg agattgttgg tgacaatacg caaattgctg tgattaagca gcgcgtgcgc
     2161 caccgcttcc ggcgtggtgc cgatatcgat aaacagtgtc gagccgttgg ggatttgctc
     2221 cgccactttg cgggcaatcc tctctttttc ttcggtctgg gtggctttgc gatcgtgcca
     2281 cggcgtgtta accgaactgg aaggcagcgc cgcaccgcca tggtgacgca ggatcaggtt
     2341 ttgctccgcc agctcattga ggtcgcggcg aatagtctgc gggctgacgg agaaacgctc
     2401 taccagctct tcagtactga cataaccctg ctgtttaacc agttcgataa taccgttgtg
     2461 acgttgtgtt tgtttcattt ataaatccct ggaattattt tcgttttcgc gcattgagcg
     2521 aatcaacaaa agccatcgct aaacccacgg ctaacccggc gatgtgtgct ccgttcgcca
     2581 tcgacatccc aaacaaatca aaccatccgg cgacaatcca gatcagcgca aagataatta
     2641 acccacgttg caggtaaatg ccactttgcg gatcgcgctc accacgtagc cagacgtagc
     2701 ccatcagcgc atacaccacg ccagaaagcc cgccaaacca cggcccgctg aatttttgct
     2761 gcacatagcc gcttaacagg gcgctaatga gagtaataac aattagctta ccgctaccga
     2821 ggcgtttttc caccgcaccg ccgagatacc accaccagag caggttaaag aggatatgca
     2881 tcagcgagaa gtgcattaac gcgtgggtga agtaacgcca gaactcaaat ttcagtgttg
     2941 gatcgaatgg ccaggccagc cataacatca cttcctgatc gccgagaatt tgcatggcga
     3001 taaacaccac cacgcaggcg atcatcacca cccaggttac cggacctgcg cgttcacgca
     3061 aggcagcaaa gaaaggataa cggcgataat gcagaccact gccggtatgg cccgcctgcc
     3121 agctggccgc cagataacgc ggatctgccg ggttttcgag aaaacgcgcc agctccgccc
     3181 gcacgcgctc ggcctgggac tcatccgcca gccagacatc gctttggtta tgttgttgaa
     3241 tcgtaaggat aacaccctgc gtcgccatgt aatcaacaaa cgcctgcacc acgcgggggt
     3301 tagcaaaaga ggtaatcatc aacatcgttg ctgtcgctta tgccacacaa aaggggacag
     3361 tataaagcgt tacgcgccgt acgccacctc tgcgggaaac tgacgctgcc aggcttcaaa
     3421 accgccgtca atgctataga ccacatcgta gccctgttgc agcagatact gcgccgcgcc
     3481 tttgctacta ttgccgtgat aacacatcac catcaccgga gtgtcaaagt cgttatcacg
     3541 cataaacgcg cccagcgtgt cgttggttaa atggaaagcc tgcaccgcat gtcccattgc
     3601 gaaactctgt ggatcgcgaa tatcgaccag caccgcctct ttttcctgca acttctggtg
     3661 cgcgtcggca acgttaatac attcgaacag atccatgcgt ctctctttct ttacaaacaa
     3721 gtgggcaaat ttaccgcaca gtttacgtcg aagcggcaga taaacgccat aatgttatac
     3781 atatcactct aaaatgtttt ttcaatgtta cttaaagcgc gattctttgc taatatgttc
     3841 gataacgaac atttatgagc tttaacgaaa gtgaatgagg gcagcatgga aaccaaagat
     3901 ctgattgtga taggtggcgg catcaatggt gctggtatcg cggcagacgc cgctggacgc
     3961 ggtttatccg tgctgatgct ggaggcgcag gatctcgctt gcgcgacctc ttccgccagt
     4021 tcaaaactca ttcacggtgg cctgcgctac cttgagcact atgaattccg cctggtcagc
     4081 gaggcgctgg ctgaacgtga agtgctgctg aaaatggctc cgcatatcgc cttcccaatg
     4141 cgttttcgcc tgccacatcg tccgcatctg cgcccggcgt ggatgattcg gattggtctg
     4201 tttatgtacg atcatctggg taaacgcacc agcctgccgg gatcaaccgg tttgcgtttt
     4261 ggcgcaaact cagtgttaaa accggaaatt aagcgcggat tcgaatattc tgactgttgg
     4321 gtagacgacg cccgtctggt actcgccaac gcccagatgg tggtgcgtaa aggcggcgaa
     4381 gtgcttactc ggactcgcgc cacctctgct cgccgcgaaa acggcctgtg gattgtggaa
     4441 gcggaagata tcgataccgg caaaaaatat agctggcaag cgcgcggcct ggttaacgcc
     4501 accggcccgt gggtgaaaca gttcttcgac gaggggatgc atctgccttc gccttatggc
     4561 attcgcctga tcaaaggcag ccatattgtg gtgccgcgtg tgcataccca gaagcaggcc
     4621 tacattctgc aaaacgaaga taaacgtatt gtgttcgtga tcccgtggat ggacgaattt
     4681 tccatcatcg gcaccaccga cgtagagtat aaaggcgatc cgaaagcggt gaagattgaa
     4741 gagagtgaaa tcaactatct gctgaaagtg tataacgcgc actttaaaaa acagcttagc
     4801 cgtgacgata tcgtctggac ctactccggt gtgcgtccgc tgtgtgatga tgagtccgac
     4861 tcgccgcagg ctattacccg tgattacacc cttgatatcc atgatgaaaa cggcaaagca
     4921 ccgctgctgt cggtattcgg cggtaagctg accacctacc gaaaactggc agaacatgcg
     4981 ctggaaaaac tgacgccgta ttatcagggt attggcccgg cgtggacgaa agagagcgtg
     5041 ctgccgggtg gtgccattga aggcgaccgc gacgattacg cagctcgtct gcgccgtcgc
     5101 tatccattcc tgactgaatc gctggcgcgt cattacgcac gcacttacgg cagcaacagc
     5161 gagctgctgc tcggcaatgc gggggcgata agcgacctcg gggaggattt cggtcatgag
     5221 ttctacgaag cggaactgaa atacctggtg gatcacgaat gggtccgccg caccgacgat
     5281 gccctttggc gtcgcacaaa acaaggcatg tggctgaatg cggatcaaca atctcgtgtg
     5341 agtcagtggc tggtggaata tacgcagcag aagttgtcgc tggcgtcgta aggatgatgc
     5401 ccggttgaag tgcaaccggg ctatttggat tccttagact attcattgta aataattgaa
     5461 taacggcccc tgagctaaaa tcgccaaact taagcacgtt acccaatcgc cccacttctt
     5521 cctctggttt ctattttttc tgcaccaatg gcaataatat cccaatgcaa aaccaagctg
     5581 tgcactaatc gggccgacaa aatcagtcca aggctgcggc caaaaagggg aaaaattcag
     5641 gggaggccag acaaacgtca gaaagaaatt tcggatattt tccagcaacg ctgatttctc
     5701 tggagaaata taaagaatga aattcgagag aattaaccag aaatagaccg gcgaaaagac
     5761 cagccagcaa tgcagtctgt tttttaattc aggaggcgtt ctgcgggaga attgccaacc
     5821 gatgccagcc attacactga aaaaaagtgc atattcaact attaactcaa gttgtaattc
     5881 ctgaagagaa atacgcacaa ccaggagcgg aaaggagaat attatttctg ccagaaaagt
     5941 taacgtgaat ataagtacgg ctaagacaat aaccgtcagc cataccaata atgacacgat
     6001 aacaaaaccg agaattacag ggggaatata aagccggaat ctaatcattt ttattttcct
     6061 ggtgattcgg atgatgcgtc atacatcgcg cataaacact catcaattat ccagtcatct
     6121 tcccagacct gatattctgt cattggttcg ggctgtttta gcgggttctc aatcgcttgc
     6181 cgcgctcttt ctttcagtaa aggatgatta tttctagccc aggcattgat ttgggtggta
     6241 atgacgttat cgatatcgtc ctggttatct ctgatataat cctcacaata tctgttcaat
     6301 aaacaggcaa gagaaacggt cgaccaaaag ccgggaactg aattaatggc atccagcaat
     6361 ggcgcaagag cgatatcggc acggaaaaac atttccagca tatactgtaa ttcgacagct
     6421 tcatcgccgg atacccaatc agtcatatac tggcaggcaa atcgctgtaa aattgcccgt
     6481 tcatccgcac gccagttttc tttgttggca aggttgatac ggcgcagaga aaaaactacg
     6541 tgaatattgt caaaatgccc ctgtgcaaca aattccagta aacgcggcag aaaatagcgg
     6601 acctcatcgc tattttgcgg atcaggccct gggctactat tccaggcatt gattaaggaa
     6661 tacgggatcg ctcgtaacga tgtactccgt aatgcctttt gttcctgctg actcaggcaa
     6721 tattcacaac aaaccacaaa tttctgcggc acccgataac gacgaaaggt gtgataaatc
     6781 tgctcaatta atgcctgcat ggcggggctg ggttgcatag ttaccccctc gcccgctgat
     6841 cgcgtgtaaa cggttgatag acaaaacgag cagtcgccgc gttcaggcga ataagggcgc
     6901 tacgcgaaag ggaaaagctg gggcgaatgc aactattgca gtctcgacag ctttcctctg
     6961 cgcaattttc cactgagtaa tgacgcgtgt agagtttcag tgcggcctgc ttatcgcgaa
     7021 atccgcgtaa actgttattg ttatgaaatt tccaggcatc tttaaagacc tgaaagatat
     7081 agacatcctc aatccaggag tcacattttt taagcgggcg ctttgctatt atcacccgct
     7141 catccggatt tagcatcgcc gtaaattgta cggtgacgtc atttgtcgtg ttcaggtcac
     7201 attgaacatc tggtacatca ctgatatagg ggtcaaatcc aaaatcagca ccacaggcac
     7261 aaagacggct aatggtggcg gtatcgaggg aaaatcccgg ccatactttg ctggaggtta
     7321 agccaatatt taatgtaaca tcatatcgaa gcaatccctc aagaccgtca gcaccgacga
     7381 acttttcccc ttcatccagg gcctggttaa taagttgctg aacaatgcct tcatcccagt
     7441 atgccgattt gcagttggca atcgtaatat ccacgcctgt gaagggatca gtaccggcaa
     7501 ggcttgcaaa taatgtatta actaattcca tttttattat ccagctttaa ggtagcgtct
     7561 tatacatcgg gacataacct acatcttcca ccaaactctg tccctgcggc gttaaaaacc
     7621 actccaacaa tttttgtgtc tctgacgtcg tattttcccg cgttaccata aaggcatcga
     7681 tgatataggg atatttgccg ttgcgaatgt tttcggcagt cggtgcaata ccgttaatcg
     7741 ctagcagttt tatattttta tcggcgttca tttgtgttgc gtaataacgg aaggtgtaac
     7801 ctattgcgtt gtttgtatta cggtattcgg caacgacttt aatcattccc tccatcatac
//
LOCUS       DADMHM010000181         7849 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.184, whole genome shotgun sequence.
ACCESSION   DADMHM010000181 DADMHM010000000
VERSION     DADMHM010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7849)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7849)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7849
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.184"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            70..135
                     /locus_tag="JN125_003386"
     CDS             70..135
                     /locus_tag="JN125_003386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873043.1"
                     /translation="MYIFITHFFTEYVIFKYLLPI"
     gene            274..885
                     /gene="ruvA"
                     /locus_tag="JN125_003387"
     CDS             274..885
                     /gene="ruvA"
                     /locus_tag="JN125_003387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012131997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HAY8873044.1"
                     /translation="MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQE
                     AIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAV
                     EREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAE
                     QEAVAALVALGYKPQEASRMVSKIARPDASSETLIREALRAAL"
     gene            894..1904
                     /gene="ruvB"
                     /locus_tag="JN125_003388"
     CDS             894..1904
                     /gene="ruvB"
                     /locus_tag="JN125_003388"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017441950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HAY8873045.1"
                     /translation="MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIF
                     IKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLT
                     NLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIIIGEGPAARSIKIDLPPFTLIGA
                     TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARG
                     TPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKF
                     FGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE
                     MP"
     gene            complement(1954..2739)
                     /gene="znuB"
                     /locus_tag="JN125_003389"
     CDS             complement(1954..2739)
                     /gene="znuB"
                     /locus_tag="JN125_003389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter permease subunit ZnuB"
                     /protein_id="HAY8873046.1"
                     /translation="MIELLFPGWLAGIMLACAAGPLGSFVVWRRMSYFGDTLAHASLL
                     GVAFGLLLDVNPFYAVIAVTLLLAGGLVWLEKRPQLAIDTLLGIMAHSALSLGLVVVS
                     LMSNIRVDLMAYLFGDLLAVTPEDLIAIAIGVVIVVAILFWQWRNLLSMTISPDLAFV
                     DGVKLQRVKLLLMLVTALTIGVAMKFVGALIITSLLIIPAATARRFARTPEQMAGVAV
                     LVGMVAVTGGLTFSAFYDTPAGPSVVLCAALLFIISMMKKQAS"
     gene            complement(2736..3491)
                     /gene="znuC"
                     /locus_tag="JN125_003390"
     CDS             complement(2736..3491)
                     /gene="znuC"
                     /locus_tag="JN125_003390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter ATP-binding protein ZnuC"
                     /protein_id="HAY8873047.1"
                     /translation="MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKS
                     TLVRVVLGLVTPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTHKEDIL
                     PALKRVQAGHLINAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVPLY
                     DLIDQLRRELDCGVLMVSHDLHLVMAKTDEVLCLNHHICCSGTPEVVSLHPEFISMFG
                     PRGAEQLGIYRHHHNHRHDLQGRIVLRRGNDRS"
     gene            3570..4502
                     /gene="znuA"
                     /locus_tag="JN125_003391"
     CDS             3570..4502
                     /gene="znuA"
                     /locus_tag="JN125_003391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416371.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein
                     ZnuA"
                     /protein_id="HAY8873048.1"
                     /translation="MLHKKTLLFAALSAALWGGATQAADAAVVASLKPVGFIASAIAD
                     GVTETEVLLPDGASEHDYSLRPSDVKRLQNADLVVWVGPEMEAFMQKPVSKLLGAKQV
                     TIAQLEDVKLLLMKSIHGDDDDHDHAEKSEEDHHHGDFNMHLWLSPEIARATAVAIHG
                     KLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAPLKGKGYFVFHDAYGYFEKQFG
                     LTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMG
                     TLDPLGTNIKLGKTSYSEFLSQLANQYASCLKGD"
     gene            4518..5840
                     /gene="mepM"
                     /locus_tag="JN125_003392"
     CDS             4518..5840
                     /gene="mepM"
                     /locus_tag="JN125_003392"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein DD-endopeptidase MepM"
                     /protein_id="HAY8873049.1"
                     /translation="MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHRD
                     ATPIVKTIELEQNEIRSLLPEASEPIDQAAQEDEAIPQDELDDKIAGEAGVHEYVVST
                     GDTLSSILNQYGIDMGDITQLAAADKELRNLKIGQQLSWTLTADGELQRLTWEVSRRE
                     TRTYDRTAANGFKMTSEMQQGEWVNNLLKGTVGGSFVASARNAGLTSAEVSAVIKAMQ
                     WQMDFRKLKKGDEFAVLMSREMLDGKREQSQLLGVRLRSEGKDYYAIRAEDGKFYDRN
                     GTGLAKGFLRFPTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFAMPQGTPVLSVGDGE
                     VVVAKRSGAAGYYVAIRHGRSYTTRYMHLRKILVKPGQKVKRGDRIALSGNTGRSTGP
                     HLHYEVWINQQAVNPLTAKLPRTEGLTGSDRREFLAQAKEIVPQLRFD"
     gene            5960..6931
                     /gene="lpxM"
                     /locus_tag="JN125_003393"
                     /gene_synonym="msbB"
     CDS             5960..6931
                     /gene="lpxM"
                     /locus_tag="JN125_003393"
                     /gene_synonym="msbB"
                     /EC_number="2.3.1.243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416369.1"
                     /note="LpxM is lauroyl-Kdo(2)-lipid IV(A)
                     myristoyltransferase, an enzyme characterized in
                     Escherichia coli and involved in biosynthesis of the form
                     of lipid A found in that species and some closely related
                     species; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase"
                     /protein_id="HAY8873050.1"
                     /translation="MEMKKNNSEYIPEFDKSFRHPRYWGAWLGVAAMVGIALTPPKFR
                     DPILARLGRFAGRLGKSSRRRALINLSLCFPERSEAEREAIVDEMFATAPQAMAMMAE
                     LAIRGPEKIQPRVDWQGLQIIEEMRRNNEKVIFLVPHGWAVDIPAMLMASQGQKMAAM
                     FHNQGNPVFDYVWNTVRRRFGGRLHARNDGIKPFILSVRQGYWGYYLPDQDHGPEHSE
                     FVDFFATYKATLPAIGRLMKVCRARVVPLFPIYDGKTHRLTIQVRPPMDDLLEADDHT
                     IARRMNEEVEIFVGPRPEQYTWILKLLKTRKPGEIQPYKRKDLYPIK"
     gene            complement(7020..>7849)
                     /locus_tag="JN125_003394"
     CDS             complement(7020..>7849)
                     /locus_tag="JN125_003394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000281525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HAY8873051.1"
                     /translation="MTLIYHYNSSYLRFAFTLTQDSPRVDVQTFIDWHEPNVSLKVKF
                     PVSVQTSLAQCQIQFGVIDRPTHSDDSFAFAKDEIPAHHWVDLSDRETGIALIAKNKY
                     GYRVKDQTLELTLLRSQHKPGEVVKTDNYDNFLINNFADIGKQKFIFSLFPHHGDYRV
                     GGVINQAYIMNHPLQVVPVKPHPGELPPSLSFFAIDTNSVIIETIKLAEDGDGIIVRL
                     YESHGLEISAMLSWVCNYHYVQYVDLQENKLDDSFYCNQYCNLEFKPFEIITLRLTQ"
BASE COUNT         2099 a         1853 c         1978 g         1919 t
ORIGIN      
        1 ttgtcattcc attgaaatag atacgaatat acgtaatagc ataaaaaaat tattttttca
       61 ggaggcgcaa tgtatatttt tattacgcat ttcttcactg aatacgtaat atttaaatat
      121 ttgcttccaa tataacctgt agaataaatc atactgcgcc atttttcagt tcatcgagac
      181 acctcgcaag ttttcttcat ccttcgctgg atatctatcc agcatttttt tatcatacag
      241 cattatcttt gattcattac gcaggagcgt catgtgatag gcagactcag aggcatcatc
      301 attgaaaaac aacccccgct ggtgttaatt gaagtgggcg gcgtaggcta tgaagtgcat
      361 atgccgatga cctgttttta tgaactccct gaagcgggtc aggaagcgat cgttttcacc
      421 cactttgtgg tgcgtgaaga cgcgcaactg ctgtacggtt ttaacaataa acaagagcgc
      481 acattgttca aagagttgat caaaaccaac ggcgtcggcc cgaagttggc gctggcgatc
      541 ctctccggaa tgtcagcgca gcagttcgtt aatgccgttg aacgtgaaga agtgggggca
      601 ctggtgaaac tgccgggtat tggcaaaaaa accgccgaac gcttgattgt tgaaatgaaa
      661 gaccgattta aaggtttgca tggcgatctg tttaccccgg ccgccgacct ggtactcaca
      721 tcacctgcca gcccggcgac cgacgatgct gaacaggaag cggttgccgc gctggtggcg
      781 ctgggctata aaccacaaga agcaagccgc atggtgagca aaatcgctcg ccctgacgcc
      841 agcagtgaaa cattaattcg cgaagcccta cgcgccgcgt tatgaggtaa aggatgattg
      901 aagcagaccg tctgatttct gccggtacca ctttgccgga agatgtagca gatcgcgcca
      961 ttcgccctaa attactggaa gagtatgttg gtcagccgca ggttcgttca cagatggaga
     1021 ttttcatcaa agcagcgaaa ctgcgcggcg atgccctcga tcatttgttg atttttggtc
     1081 ctccggggtt gggtaaaact acgcttgcca acattgtcgc caatgaaatg ggcgttaatt
     1141 tacgcacgac ttctggtccg gtgctggaaa aggcgggcga tctggcagcg atgctcacta
     1201 accttgaacc gcatgacgtg ctgtttattg atgagatcca ccgtttatcg ccagttgttg
     1261 aagaagtgct gtatccggca atggaagact accaactgga tatcattatt ggtgaaggtc
     1321 cggcggcacg ctccattaaa attgatttgc cgccgtttac cctgattggc gcaaccacgc
     1381 gcgcaggttc gctgacatca ccgttgcgcg accgttttgg tattgtgcaa cgtctggagt
     1441 tttatcaggt gccggatctg caatatatcg ttagtcgcag tgcacgcttt atggggcttg
     1501 agatgagtga tgacggcgcg ctggaagttg ctcgtcgcgc tcgcggtacg ccacgtattg
     1561 ccaaccgtct gctgcgtcga gtgcgtgatt tcgccgaagt gaagcacgat ggcaccatct
     1621 cggcagatat cgctgctcag gcgctggaca tgttgaatgt cgatgctgaa ggtttcgatt
     1681 atatggaccg caaattgttg ctggcggtaa tcgataagtt ctttggtggg ccggtaggtc
     1741 tggataacct ggcggcggct attggcgaag aacgtgaaac cattgaggat gtgctggaac
     1801 cttatttgat tcagcaaggc tttttgcagc gtacaccgcg tgggcgtatg gcgacgacgc
     1861 gggcgtggaa tcactttggc ataacgccgc cagaaatgcc gtaagtcgga ttggtcgctc
     1921 gcgccgcatc cgacaaatgt gttcagcgat agattagctg gcctgctttt tcatcatact
     1981 gataataaat aacagtgctg cacatagcac caccgacgga cccgccggcg tatcgtaaaa
     2041 tgcggaaaag gttaaaccgc ccgttacggc aaccatcccc accaacacag cgacacctgc
     2101 catctgttcc ggcgtgcggg caaagcgacg tgcagtagca gcaggaataa tcagcagtga
     2161 agtaataatc aacgcgccaa caaatttcat cgctacacca atcgtcaatg ccgtcaccag
     2221 catcaacaac aatttcacgc gctgtaattt cacaccatca acaaacgcca gatccgggct
     2281 aatcgtcatc gacagcaaat tgcgccattg ccagaacaaa atagccacca cgatgaccac
     2341 gccaatcgca atagcgatga gatcttctgg cgtcactgcc agcaaatcac cgaacaggta
     2401 agccatcaaa tcaacacgaa tgttagacat cagactaacg accaccaggc ccagcgacag
     2461 ggcactgtgc gccataatcc ctaataacgt gtcaatcgcc agctgtggac gcttctccag
     2521 ccataccaga ccgcccgcca ggagcagcgt aacggcaatt accgcataga atggattcac
     2581 gtccagcaac aaaccaaacg cgacgccaag taatgaggca tgagccagcg tatcaccgaa
     2641 ataagacata cgacgccaga ctacaaacga acccagcgga cccgcggcac aggcgagcat
     2701 gatcccggct aaccaaccgg gaaataataa ttcaatcatg agcgatcatt tccccgacgc
     2761 aaaacaattc gtccctgtaa atcgtgacga tgattatgat gatggcgata gatacccagt
     2821 tgttcagcac cacgaggacc aaacatagaa ataaactccg gatgtaggga aacaacttcc
     2881 ggtgtgccgg aacaacaaat gtggtgattc agacacagca cttcatcggt ttttgccatt
     2941 accagatgca gatcgtgaga gaccattaaa acgccacaat ccagttcgcg acgcaactgg
     3001 tcaataaggt catataacgg cacctggcca tttacatcca cgccttgagt gggttcatcc
     3061 agcactaata attgcggtcg atttaacaat gctcgcgcta acagtacacg ctgtgtttcg
     3121 ccaccagaga gcttttgcat cggtgcgtta atcagatgcc cggcctggac acgtttcagt
     3181 gcaggcaaaa tatcttcttt atgtgtgcca gggcgtaagc gtaaaaaacg gtttacggtc
     3241 agtggcaacg tggtgtcgag atacagcttc tgcggtacat agccgatgcg tagttttccg
     3301 ttgcgcttga taaccccttc atcgggtgtt accagcccga gcactacccg taccagtgtc
     3361 gacttacctg cgccatttgg cccaagtaaa gtcaaaattt ttccaggttt aagttccagt
     3421 gacacatcag agaggacgcg gcgttggcca aaagaaaccg agacattttc cagggaaacc
     3481 agacttgtca tgttaatttt agtcttgcag tagtcatgaa atgttataat atcacacttc
     3541 tcatattcat tacgatgatt ggtcgcatta tgttacataa aaaaacgctt cttttcgcag
     3601 cattatccgc cgctctctgg ggaggtgcaa cacaggccgc agatgccgcc gttgtcgctt
     3661 cgcttaaacc cgttgggttc atcgcttctg ccattgctga tggtgtaaca gaaacggagg
     3721 ttttactgcc tgacggcgct tcagaacatg attattcact gcgtccatcg gatgtaaaac
     3781 gcttacagaa cgcggactta gtcgtttggg ttggcccgga gatggaagcg tttatgcaaa
     3841 aaccggtaag caaattacta ggagcgaagc aggtaacgat tgcgcagctt gaagatgtga
     3901 aactgctact gatgaaaagt attcacggcg atgatgatga tcacgaccac gcggaaaaaa
     3961 gtgaagaaga tcaccatcac ggcgatttca acatgcatct ttggctttcc ccagagatag
     4021 cgcgggctac agcggttgca atccatggaa aattagtgga acttatgccg caaagtcgag
     4081 ccaaacttga cgccaacctg aaggattttg aggcacaatt agcctcaacc gaaacgcagg
     4141 ttggtaacga gctcgcgccg ctcaagggga aaggttattt cgtttttcac gatgcttacg
     4201 gctatttcga aaaacagttc ggactgacac cgcttggtca ttttaccgtt aaccctgaga
     4261 ttcaacctgg cgcgcagcgt ttacatgaaa taagaacaca gttggttgag caaaaagcaa
     4321 cctgcgtttt tgctgagcca cagttcaggc cagcggtcgt tgagagcgtc gcacgaggga
     4381 catccgttcg tatgggaacg ttggatccct tggggacgaa tatcaaactg ggtaaaacaa
     4441 gctattcaga attcctgagt caattagcca accagtatgc gagctgcctg aaaggagatt
     4501 aatgaggaag tgattacgtg caacagatag cccgctctgt cgccctggcg tttaataatt
     4561 taccgcgacc acaccgcgtt atgttggggt cgctcaccgt tcttactctg gccgtcgctg
     4621 tctggcggcc ctatgtttat caccgcgatg ccacgccaat tgtcaaaacc attgagctgg
     4681 aacagaacga aattcgttcg ctcttacctg aagccagtga gccgattgat caagctgcac
     4741 aagaagatga agccattccc caggacgaac tggatgacaa aatcgccggt gaagcgggtg
     4801 tgcatgaata tgttgtttcc actggcgata cgctaagcag cattctcaat cagtatggta
     4861 ttgatatggg tgatatcacc caactggctg cggccgacaa agaattgcgt aacctgaaaa
     4921 tcggtcaaca actctcctgg acattaaccg cggacggcga actgcagcgc ctcacctggg
     4981 aagtgtctcg tcgtgaaacc cgaacctatg accgtactgc cgctaacggt tttaaaatga
     5041 ccagcgaaat gcagcaagga gagtgggtta acaatctgct gaaaggtacc gtcggaggaa
     5101 gctttgttgc cagcgccaga aacgccggtt taaccagcgc cgaagtgagc gcagtgatta
     5161 aagccatgca gtggcaaatg gatttccgca aactgaaaaa aggcgatgaa tttgcggtgt
     5221 taatgtctcg agagatgctt gatggtaaac gtgagcaaag ccagctgctg ggcgtacgtt
     5281 tgcgttcaga aggtaaagat tattacgcaa tccgcgctga ggatggcaaa ttctacgacc
     5341 gtaacggtac tggtctggcg aaaggattct tgcgattccc gacggcgaaa cagttccgta
     5401 tctcgtctaa ctttaacccg cgtcgtacta atccggtgac cggtcgcgtt gcaccacaca
     5461 gaggtgttga tttcgccatg ccgcagggta cgccagtgct ttcagtgggt gacggtgaag
     5521 tggtggttgc caaacgcagt ggcgcagcag gttattatgt ggctattcgt catggtcgca
     5581 gctacaccac gcgttatatg cacttgcgca agattctggt gaaaccggga cagaaggtga
     5641 aacgtggcga ccgtatcgcg ctttccggta ataccggacg ttcaaccggg ccgcatctgc
     5701 actatgaagt atggataaac cagcaggccg taaacccgct gacggcaaaa ctgccgcgta
     5761 ccgaagggct gaccggctcc gatcgtcgcg aattcctggc gcaggccaaa gagattgtgc
     5821 cgcagctacg gtttgattaa ttaacatcca ttcgcagccg gtacgcagtc agtaccggct
     5881 ttttttattt ggtgcggggc aagttgcgcc gctacactat caccagattg atttttgcct
     5941 tatccgaaac tggaaaagca tggaaatgaa aaaaaataat agcgaataca ttcctgagtt
     6001 tgataaatcc tttcgccacc cgcgctactg gggagcatgg ctgggcgtag cagcgatggt
     6061 gggtatcgct ttaacgccgc caaagttccg tgatcccatt ctggcacggc tgggacgttt
     6121 tgccggacga ctgggaaaaa gctcacgccg tcgtgcgtta atcaatctgt cgctctgctt
     6181 tccagaacgt agtgaagctg aacgcgaagc gattgttgat gagatgtttg ccaccgcgcc
     6241 gcaagcgatg gcaatgatgg ctgagttggc aatacgcgga ccggagaaaa ttcagccgcg
     6301 cgttgactgg caagggctgc agatcatcga agagatgagg cgtaataacg agaaagttat
     6361 ctttctggtg ccgcacggtt gggccgtcga tattcctgcc atgctgatgg cctcgcaagg
     6421 gcagaaaatg gcagcgatgt tccataatca gggcaacccg gtttttgatt atgtctggaa
     6481 cacggtgcgt cgtcgctttg gcggtcgtct gcatgcgaga aatgacggta ttaaaccatt
     6541 catcctgtcg gtacgtcagg ggtactgggg atattattta cccgatcagg atcatggccc
     6601 agagcacagc gaatttgtgg atttctttgc cacctataaa gcgacgttgc ccgcgattgg
     6661 tcgtttgatg aaagtgtgcc gtgcgcgcgt tgtaccgctg tttccgattt atgatggcaa
     6721 gacgcatcgt ctgacgattc aggtgcgccc accgatggat gatctgttag aggcggatga
     6781 tcatacgatt gcgcggcgga tgaatgaaga agtcgagatt tttgttggtc cgcgaccaga
     6841 acaatacacc tggatactaa aattgctgaa aactcgcaaa ccgggcgaaa tccaaccgta
     6901 taagcgtaaa gatctttatc ctatcaaata aaaaaaagcc tctcaaatta ttgagaggct
     6961 gtactcgata aaaaatctca atgagtgttc ccactatttt gagtttttag gttagtacgc
     7021 tattgagtta atcgtagcgt gataatttca aaaggtttga actcaagatt gcaatattga
     7081 ttgcaataaa aactgtcatc taacttattt tcttgaagat cgacatattg aacgtagtga
     7141 taattacata cccacgaaag catggctgaa atttctaatc catgactctc atataatctt
     7201 acgattatac cgtcgccgtc ttcagctaat tttattgttt cgatgataac gctgttagta
     7261 tcgatagcaa aaaatgatag tgaagggggt aattcacccg ggtgcggttt gacagggacg
     7321 acctgtaagg gatgattcat tatataggct tgattaataa caccacccac acggtaatct
     7381 ccatgatgag gaaataagga gaatatgaat ttttgtttac caatatctgc aaaattatta
     7441 atcaggaaat tatcataatt gtctgtctta acaacttccc caggtttatg ctgcgaacgc
     7501 agcaaagtta attcaagcgt ctggtctttg acacggtagc catatttgtt ttttgctatt
     7561 aaagctatgc cagtttctcg atcagaaagg tcgacccagt gatgtgctgg tatttcatct
     7621 ttggcaaaag cgaacgaatc atcgctatgc gttggtctgt caattacacc gaactgaatt
     7681 tgacattgtg caagagatgt ttgtactgac accgggaatt tgactttgag agaaacatta
     7741 ggttcgtgcc aatcaataaa agtttggaca tcaacgcgtg gactgtcctg tgtcagggta
     7801 aatgcgaagc gaagataaga ggaattgtag tgataaatca gcgtcatcg
//
LOCUS       DADMHM010000182         7752 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.185, whole genome shotgun sequence.
ACCESSION   DADMHM010000182 DADMHM010000000
VERSION     DADMHM010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7752)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7752)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7752
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.185"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            594..4007
                     /locus_tag="JN125_003395"
     CDS             594..4007
                     /locus_tag="JN125_003395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000438152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HAY8873052.1"
                     /translation="MEQSLNFEMLRSQWPELAELACMAERYVHSDPESCLVKLRNYTE
                     LMVRWLYRQERLPEGIKANLYDLMNADVFTSMMPEAIIMKMDALRIHGNRAAHGGRIK
                     AKDTYWLLKEAYLLGIWLYVRYAHGNVDDCPKFTLPPLTQSSGRADEKRLEDAIKAQD
                     ESRERELALQRALQQEQEKAEHLTQRLNEARARNKHVADILSIDEAETRRRLIDSRLL
                     AADWNVGEELKNTDQVTQEHPVKEQPTTSGDGYADYVLWDEAHKPLAVVEAKKTSVNA
                     EQGRIQARLYADWLEKEYGQRPVIFYTNGYDIWLWDDHKTHGYPPRRVFGFYSKESLQ
                     YLIQQRETRLPLNRVPHVKDNEGKAVAGRLYQLETIARVSERFTNKYRQSLIVQATGT
                     GKTRVAIALSKLMIDARWVKRVLFLCDRKELRKQAANAFNQFTNEPLYVVGKSKKADR
                     QNARIYIATYPGMMKIMDHFDVGYFDLIIADESHRSIYNVYGDLFKYFDALQIGLTAT
                     PIDMVSKTTFGLFGCEGRIPTANYSLEDAIADNNLVPYEVVTHTTEFLREGIKREKLS
                     DAQIRELEEQGIDPNTLEFDGKALDEAIYNKDTNRYILRNLMENGLKDRDGQLPGKTI
                     IFARNHKHALLLNELFDDMYPQFAGRFCQVIDNYDPRAEQLIDDFKGLDESTNKELTI
                     AISVDMLDTGIDVPEIVNLVFAKPVKSKVKFWQMIGRGTRLCPGLYGYDDNGKPLDKQ
                     KFRIFDHWGNFEYHELHTEEAEVTATKSLAQKRFEAWVMLGAAAQRKFDKQAVDLVAH
                     QLREQINALDEKSIAVQEKWQQKAQYSDEKVLRQLSPKTQQDLLSVLAPLMQWLDVRG
                     QSDAIRFDMDILAAQTARYTNPEELDVLWPIIVEKVERLPPHLAQVQQQGQRINQLRD
                     LSWWKQASLEELEDIRIHLRGIMHLMEKDATPKFGSIQVDITEDANLIQTETRKTNIR
                     SIDFKLYRQQVQGALEPLFQQNPVLKKIRNGEPVTQNELDELAKLVLIQNPNVDIRAL
                     KEFYPQATASLDKLLRTIIGMDSDAVEVRFAQFAADNSLTSQQLRFLSLLKNHIRDYG
                     TIEMRQLFEQPFTHIHNEGVTGVFPDIAQIARLQKIVEELGVVTDAATV"
     gene            4071..5705
                     /locus_tag="JN125_003396"
     CDS             4071..5705
                     /locus_tag="JN125_003396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000627727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HAY8873053.1"
                     /translation="MITGDLKSKIDGLWEDFWVGGITNPLTVIEQITYLMYSRMLDTQ
                     EQRDEKRKQIAGIDFKPRFAPEQQEFRFSHYSNLGSDEMMEVVRDGVFQHFRQLGQAD
                     ASKVTLLGNFMKDARLEIVKPSLLTKAVEVIKNLPLDRGDTKGDLYEYLLSKLTTAGI
                     NGQFRTPRHIIRTMVEMMEPNPARGETICDPACGTGGFLATSYEYLLEKYSSLESIHT
                     EIGTNERGELEEQKIFTGDLLTPWRNHVDNNMFHGYDFDTTMLRIAAMNLIMHGVDAP
                     DIHYQDTMSQSFSTNFPQASKNAFNLILANPPFTGSLDEEDIDSTLSAMVKTKKTELL
                     FLARILQMLKVGGRSATIVPQGVLFGSSKAHQSLRKTLVEDNQLEAVINLPSGVFKPY
                     AGVATAILIFTKGGQTDEVWFYDLQNDGYSLDDKRNPIKDNDLPHLLASWKHYRTLRG
                     LPVDNFMGKKLASLLKQQYPEGINAGVDFKDRTQAAFVVPKADIAAQKYDLSINRYKE
                     VVYQAEEYEDPKVILKRLKDLEKEILADLDELEGML"
     gene            5714..6784
                     /locus_tag="JN125_003397"
     CDS             5714..6784
                     /locus_tag="JN125_003397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001438891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HAY8873054.1"
                     /translation="MVKLGDVINVHYGKALKADQRVSNGSVHVFGSSGIVGNHDKTLC
                     SYPTIIIGRKGSVGAITWAPSGGWIIDTAYYVEIKDNNKLDLRYLFYILSGIDLTKKT
                     ITTSIPGLNRDDLYDTFIKLPPFEEQKRIVDLLDKAEGIRQKREQSIKLADDFLRATF
                     ATMYGNPITNPKKWPVHLMGDIIEFKGGNQPPKSDFIFEPKQGYIRLVQIRDFKSDKY
                     ATYIPQEKAKRIFEVDDVMIARYGPPVFQILRGLSGSYNVALMKASPKENIRKGFIFY
                     LLQLPEYHDVVVKNSERTAGQTGVNLELLNKFNVPLPPIYYQDEILDRLARIEKFKEK
                     IEISLNHLEIQFLSLQKRLMGF"
     gene            complement(6904..7620)
                     /locus_tag="JN125_003398"
     CDS             complement(6904..7620)
                     /locus_tag="JN125_003398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000947861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873055.1"
                     /translation="MLSETKKRIPAHLFRMIKDELYELVLTDDPKGKLYVRDSEKIEE
                     GVSTTEFVVGYGAISMVKKSESMATKGLVGLERVDLIREVVFENGYYDWGCVVNDVLP
                     NICKGNVRIPIFHFLNHAKLINPDGSIINETELSGGVLSRLNITPISFQSQGWDKRRS
                     ETVPEVKVGVNELYLAYDFSFFFRMMPYMEPGLIKRDMGELLKILKKYIDEAMNTQVL
                     SSNFCKLVCIYDYIKNSHRY"
BASE COUNT         2261 a         1762 c         1805 g         1924 t
ORIGIN      
        1 gtccgttaaa ctcaggctac ctcagacagt cctgttctcc caaatatcat ggtattgata
       61 cgggagatta tgccgtacag gtacgacacg ttatgtcgtg ccaaagggga gtggatagaa
      121 aaaatggcga agatgcgaaa agttgattaa tgcattgaaa aaaaatgaat taataatgaa
      181 cttgggtaaa agcgccatca aaatacgaca cgacctgtcg tattttgtgt tagccgggaa
      241 aagatatcgg ctacttacta aaatgattta gtgctgaaaa tatttataag ccaataaata
      301 gacaggtatt acggagtaac gcccaggcta ttttaacgag cctgctgttt tattggctca
      361 aaaaacatat cccatagatg atcagccata cccgcgttag tgagcaaggt atcccttgag
      421 tagccagggc tgaagacgcc cattgatggg cgaaaaccaa ggttctggcc gttaaagcgg
      481 ctatgtcgtt aaacacatca ccaccatatg ccatccggct cacttcgtcg gccaaattag
      541 tgtgatattc tttccagaat ttctgttgta tccacaacat aaggcgatga ttgatggagc
      601 agtctctcaa ttttgaaatg ttgcgcagcc agtggccgga actggcagaa ctcgcatgta
      661 tggcagagcg ctatgttcac tccgatccgg aaagctgcct ggttaagctg cgcaactaca
      721 ccgaattgat ggtgcgctgg ttgtatcgtc aggagcggtt gccggaaggt attaaggcta
      781 atctttacga tttaatgaac gctgatgtct ttaccagcat gatgccggaa gccatcatca
      841 tgaaaatgga tgctctgcgt atccatggca accgtgccgc gcacggcgga cgtatcaaag
      901 ctaaagatac ttactggctg ctcaaagaag cgtatttgtt gggaatttgg ctgtatgttc
      961 gctacgccca cggtaatgtt gatgactgcc ccaaatttac actccctcca ttaacacaat
     1021 cttcaggtcg tgcagatgaa aaacgtctgg aagatgcaat caaggctcag gatgaaagcc
     1081 gtgagcgcga actggcgcta caacgcgcac tacagcaaga acaggaaaag gccgaacacc
     1141 tcactcaacg cctgaatgaa gccagagcgc gtaacaagca tgttgccgat attctctcta
     1201 ttgatgaagc ggaaacccgc cgtcgcctga ttgactctcg cttacttgca gccgactgga
     1261 atgtagggga agaacttaaa aacacggatc aagtcacaca agaacatcca gtcaaagagc
     1321 aacccaccac ctctggtgac ggttatgcag actatgtctt gtgggatgag gcacacaaac
     1381 cgttggcggt ggtggaagca aaaaaaacca gcgtcaatgc cgagcaagga cgaattcagg
     1441 cccggctgta tgcagactgg ctggaaaaag aatacggtca gcgtccggtc atcttctaca
     1501 ccaacggcta tgatatctgg ctgtgggatg accataaaac tcatggttat cccccgcgtc
     1561 gggtgtttgg cttctacagc aaggaaagcc tgcaatatct tattcagcag cgtgaaaccc
     1621 gtctgccgct gaacagagtg ccacacgtaa aagataacga aggtaaggcc gttgccggac
     1681 gtttgtacca gctcgaaacc attgcccgcg tcagtgaacg gtttaccaac aagtaccgac
     1741 aatcgttaat tgttcaggct acgggtacag gcaaaacccg cgtggcaatt gcactaagca
     1801 aactgatgat tgatgcccgc tgggtaaaac gcgtcctgtt tctttgcgac cgtaaagaac
     1861 tgcgtaaaca ggcggcaaat gcctttaatc aattcaccaa tgagccgctg tatgtggtcg
     1921 ggaaatcgaa aaaagcagac aggcagaatg ccagaatcta catcgctacc tatcccggta
     1981 tgatgaaaat catggaccat ttcgatgtcg gttatttcga tttgatcatc gccgatgaat
     2041 cccaccgctc tatctacaac gtctacggcg atctgtttaa gtattttgat gccctccaga
     2101 ttggcctgac ggccacgcca attgacatgg tgagtaaaac cactttcggc ctgtttggtt
     2161 gtgaaggacg tattcctacc gccaactaca gcctggaaga tgccatcgcc gataacaatc
     2221 tggttcccta tgaggttgtc acacacacaa cagaattcct gcgcgaaggt atcaaacggg
     2281 agaaattaag cgacgcacaa atccgcgagc tggaagaaca aggcatagat cccaatacgc
     2341 tggagtttga tggcaaggcg ctggatgagg cgatctacaa caaagacacc aaccgctata
     2401 tcctgcgtaa cctgatggaa aatggcctga aagatcggga cggccagttg cctggtaaaa
     2461 ccatcatttt cgcccgtaac cacaaacacg cgctgctgtt gaatgaattg ttcgacgata
     2521 tgtacccaca gtttgccggg cgcttctgcc aggtcatcga caactacgat ccccgcgccg
     2581 agcaactgat tgatgatttt aaagggctgg atgaaagcac caacaaagag ctgaccatcg
     2641 ctatctccgt tgacatgctc gataccggta ttgatgtccc ggaaattgtg aatctggtct
     2701 ttgccaaacc ggtcaaatca aaagtgaagt tctggcagat gattggccgt ggtacgcgcc
     2761 tctgtccggg gttgtacggt tacgacgata acggcaaacc gctggataaa cagaaattcc
     2821 gcattttcga tcattggggc aattttgagt atcacgagct gcataccgaa gaggcggaag
     2881 tcacagcgac aaaatcgctt gcgcaaaaac gcttcgaagc gtgggttatg ctgggggccg
     2941 ctgcgcagcg taaattcgac aaacaggcgg tggatttagt tgctcaccag cttcgcgagc
     3001 aaatcaacgc actggatgaa aagtcgattg ccgtacagga aaaatggcag cagaaagcgc
     3061 agtacagtga tgaaaaggtg ctgcgccagc tttctccgaa aacacagcag gatctgctat
     3121 ctgttctggc cccgttgatg cagtggctgg acgtgcgcgg gcaaagcgat gccatacgct
     3181 ttgatatgga tattctggcg gcgcaaactg cccgttatac caacccggaa gagctggatg
     3241 ttctctggcc gatcatcgtc gaaaaagtgg agcgcctgcc gccgcatttg gcgcaggtgc
     3301 agcaacaggg acaacgaatc aatcagcttc gtgatttaag ctggtggaag caggccagcc
     3361 tggaagagct ggaggatatt cgcattcatt tgcgcggtat catgcacctg atggaaaaag
     3421 acgcgacgcc taaatttggt tcgatacagg tggatattac cgaagatgcg aacctgatcc
     3481 agacggagac ccgcaaaact aatatccgct cgattgattt caaactctat cgccagcagg
     3541 ttcagggggc gctggagccg ctgttccagc aaaacccggt tctgaagaaa atccgcaacg
     3601 gcgagccagt cacgcaaaac gagctggatg agctggcgaa gctggtgctg atccagaacc
     3661 ccaacgttga tattcgtgcg ttgaaagagt tttatccgca ggcaaccgcc agcctggata
     3721 aacttttgcg taccatcatc gggatggaca gcgacgcggt ggaagtgcgt tttgcccagt
     3781 tcgccgctga taacagcctg accagccaac aactgcgctt cctgtcattg ctgaaaaacc
     3841 acattcgcga ttacggcacc attgaaatgc ggcagctctt tgaacagcct tttacgcata
     3901 tccacaacga aggcgttacc ggtgtgttcc ctgatatagc gcaaatcgcc cgcctgcaaa
     3961 agatagtcga agagctgggt gttgtgaccg acgcagcgac ggtataatac acgcatgaca
     4021 agccccggca gcggggcttt tgtatttaaa acaggatata aacgctaaca atgattactg
     4081 gcgacttaaa aagtaaaatc gacggactat gggaagattt ctgggtgggt ggtatcacca
     4141 acccgctgac cgtaatcgaa cagatcacct atctgatgta ttcccggatg ctggataccc
     4201 aggaacaacg cgacgaaaag cgtaaacaaa tcgcgggtat tgattttaaa ccgcgttttg
     4261 cgccagaaca gcaggagttc cgtttcagtc actatagcaa ccttggctcg gatgagatga
     4321 tggaagtggt gcgcgatggc gtattccagc atttccgtca gctcggccag gccgatgctt
     4381 cgaaggtgac gctgctgggc aactttatga aagatgctcg tctggagatt gttaagccgt
     4441 cattgctgac caaagcggtt gaggtaatca aaaacctgcc attggatcgc ggcgacacca
     4501 aaggcgacct ttacgaatac ctgttaagca agctgacaac tgccggaatc aacggacagt
     4561 tccgcacacc gcgccacatt atccgcacga tggttgaaat gatggagccg aacccggccc
     4621 gcggcgagac gatttgcgat cccgcctgtg gcaccggtgg ttttctggca accagctatg
     4681 aatatctgct ggagaagtac agctcgctgg aatccattca tactgagatt ggcaccaacg
     4741 aacgtggcga gctggaagag caaaaaatct ttaccggcga tctgctgaca ccgtggcgta
     4801 accatgtgga taacaacatg ttccacggtt acgactttga caccacaatg ctacgtatcg
     4861 ccgccatgaa cctgattatg cacggcgtgg atgcgcctga tatccactat caggacacaa
     4921 tgagccagag tttcagcaca aacttcccgc aggccagtaa aaacgccttc aacctgattc
     4981 tggcgaaccc gccgtttacc ggttcactgg acgaggaaga tatcgactcc acgctgtcgg
     5041 caatggtgaa aaccaaaaaa accgaactac tgttcctggc gcgtattctg caaatgctga
     5101 aagtgggcgg gcgcagtgcc actatcgtgc cgcagggcgt gctgtttggc tctagcaagg
     5161 cgcaccagtc acttcgcaaa acgctggtgg aagataacca actggaagcg gtgatcaatc
     5221 tgccttctgg agtatttaaa ccttacgctg gcgtggcgac ggcgatcttg atctttacca
     5281 aaggcggtca aacggatgag gtctggttct acgatctaca aaatgacggc tacagcctgg
     5341 atgataagcg caacccgata aaagacaacg atctgccgca tctgctggca agctggaagc
     5401 attaccgtac tttacgcggg ctaccggttg ataactttat gggtaagaag ttagcctcgt
     5461 tgcttaaaca gcagtacccg gaagggatta atgctggcgt tgattttaaa gatcgcacgc
     5521 aggcggcgtt tgttgtaccg aaagcggata ttgctgcgca gaaatacgat ctatccatca
     5581 accgttataa agaagtcgtg tatcaggcgg aggaatatga agatccgaag gtgatattga
     5641 agcggttaaa ggatctggaa aaagagattc tggcggattt ggatgagctg gaggggatgc
     5701 tgtgagttcg gcaatggtga agttagggga tgttattaat gttcactacg gaaaagcatt
     5761 aaaagctgat cagcgtgtat cgaatggaag tgtccatgtt tttggtagtt caggaattgt
     5821 cggcaaccac gataaaacgc tttgcagcta tcccacgata attattggcc gcaaaggcag
     5881 cgttggtgct attacctggg ctccaagcgg aggctggatc attgatactg cttattacgt
     5941 tgagatcaaa gataataata agttagatct ccgatacttg ttttatattc tgagcggaat
     6001 tgatctcact aagaaaacga ttaccacaag tattcctgga ttaaatagag acgatctcta
     6061 tgatacattt attaaattac caccttttga agagcagaaa cgaattgtgg atcttctcga
     6121 taaagctgag ggtatacgcc aaaaacgtga gcaatccatc aaactggctg atgatttttt
     6181 gcgtgctacg tttgctacaa tgtatgggaa tcctattaca aaccccaaaa aatggcctgt
     6241 ccatcttatg ggagacatta ttgaatttaa aggtggaaat caaccaccta aaagtgattt
     6301 tatttttgaa cctaaacagg gttatattag attagtacaa attagagatt ttaaatccga
     6361 taaatatgcg acgtacattc cgcaagaaaa agcaaaacgt attttcgaag ttgatgatgt
     6421 tatgattgct cgttatgggc cacctgtgtt tcaaatactt agaggtttat ccggcagcta
     6481 caatgtagct ttaatgaaag cttcacccaa agaaaatatt aggaaggggt ttatattcta
     6541 tcttctacaa cttccggaat atcatgatgt tgttgtaaaa aactctgaaa gaacagcagg
     6601 acaaaccggt gtaaatcttg aactattaaa caaattcaat gttcccctcc cacctatata
     6661 ctatcaagat gagatattag atagattagc tagaattgaa aaatttaaag aaaaaataga
     6721 aatatcatta aatcatttag aaatacaatt tttatcacta cagaagagat taatgggttt
     6781 ttaaatcctt agtatcgaaa taaacattaa tttattatat taagatattt taggaaatta
     6841 aggcgtcact cttaggtaac gccttttttt actatctcgc cccctaagaa ggttatatct
     6901 tacttaatac ctgtgactat ttttgatata atcataaata cacactaatt tgcaaaaatt
     6961 acttgacaat acctgagtat tcatagcttc atctatatat tttttcaata ttttgagaag
     7021 ctctcccata tcgcgcttga ttaatccagg ctccatataa ggcatcattc taaaaaagaa
     7081 actgaaatca taagcaagat ataactcatt gacccccacc ttgacctcag gaacggtttc
     7141 agagcgtcgt ttatcccatc cttgagactg aaaactaata ggagtgatat ttaatcgtga
     7201 taaaacgcca cctgagagtt ctgtttcatt aattatactc ccatcaggat taattaattt
     7261 agcgtgattt aagaagtgaa aaataggaat gcgcacattg cctttgcata tatttggcaa
     7321 aacatcatta acaacacatc cccaatcata atatccattt tcaaatacaa cctctcggat
     7381 gagatctaca cgctccagtc caaccaatcc tttagttgcc atcgattccg atttttttac
     7441 catcgaaata gcaccatatc ccacaacaaa ctcagttgta ctgacccctt cttcaatttt
     7501 ctctgaatcc ctcacatata attttccttt cggatcatca gttaagacca actcataaag
     7561 ttcatctttt atcattcgga ataaatgtgc tggaatcctt tttttagttt cactcagcac
     7621 ctcaaatatt tctttatagg atggtgcctg aacatatttt accgggattt ttttatgaat
     7681 cacagaatca ctaatatcag cctcttcaag ttcaggtttc cattcaacaa acaataattt
     7741 attctgtaaa aa
//
LOCUS       DADMHM010000183         7730 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.186, whole genome shotgun sequence.
ACCESSION   DADMHM010000183 DADMHM010000000
VERSION     DADMHM010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7730)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7730)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7730
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.186"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(62..604)
                     /locus_tag="JN125_003399"
     CDS             complement(62..604)
                     /locus_tag="JN125_003399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005059113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873056.1"
                     /translation="MVINFITRDGDDDMNISYMNSNKTTSLPVELDALNNKDISYAKD
                     FSYVKDFFLYIETQLKIAKDFCRPGEEVSSSIASKVFHAFIDLVNKIRGKKDFMYICT
                     LCCFAEEVKGDYSHYRTFLFDIGNQYKVKLTQSGKKEFSLTLEFNDTIIESQKVTGNK
                     AKHILEDIEIFYRNKPDTYY"
     gene            967..1680
                     /gene="aphA"
                     /locus_tag="JN125_003400"
     CDS             967..1680
                     /gene="aphA"
                     /locus_tag="JN125_003400"
                     /EC_number="3.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acid phosphatase AphA"
                     /protein_id="HAY8873057.1"
                     /translation="MRKITQAISAVCLLFALNSSAVALASSPSPLNPGTNVARLAEQA
                     PIHWVSVAQIENSLAGRPPMAVGFDIDDTVLFSSPGFWRGKKNFSPESEDYLKNPVFW
                     EKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPAT
                     NMNPVIFAGDKPGQNTKSQWLQDKNIRIFYGDSDNDITAARDVGARGIRILRASNSTY
                     KPLPQAGAFGEEVIVNSEY"
     gene            1791..2207
                     /locus_tag="JN125_003401"
     CDS             1791..2207
                     /locus_tag="JN125_003401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HAY8873058.1"
                     /translation="MWYQKTLTLSAKSRGFHLVTDEILNQLADMPRVNIGLLHLLLQH
                     TSASLTLNENCDPTVRHDMERFFLRTVPDNGNYEHDYEGADDMPSHIKSSMQGTSLVL
                     PLHKGRIQTGTWQGIWLGEHRIHGGSRRIIATLQGE"
     gene            2211..2567
                     /locus_tag="JN125_003402"
     CDS             2211..2567
                     /locus_tag="JN125_003402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HAY8873059.1"
                     /translation="MTISELLQYCMAKPGAEQSVHNDWKATQIKVEDVLFAMVKEVEN
                     RPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQ
                     AVNLLPEEKRKLLVQL"
     gene            complement(2602..5424)
                     /gene="uvrA"
                     /locus_tag="JN125_003403"
     CDS             complement(2602..5424)
                     /gene="uvrA"
                     /locus_tag="JN125_003403"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HAY8873060.1"
                     /translation="MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDT
                     LYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTIT
                     EIHDYLRLLFARVGEPRCPDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKG
                     EHTKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLA
                     ESFETALELSGGTAVVADMDDPKAEELLFSANFACPICGYSMRELEPRLFSFNNPAGA
                     CPTCDGLGVQQYFDPDRVIQNPELSLAGGAIRGWDRRNFYYFQMLKSLADHYKFDVEA
                     PWGSLSANVHKVVLYGSGKENIEFKYMNDRGDTSIRRHPFEGVLHNMERRYKETESSA
                     VREELAKFISNRPCASCEGTRLRREARHVYVENTPLPAISDMSIGHAMEFFNNLKLAG
                     QRAKIAEKILKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGV
                     MYVLDEPSIGLHQRDNERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGV
                     HGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEVPKKRVPANPEKVLKLTGARGNNLK
                     DVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGATIAEPAPYRDIQGLEHF
                     DKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPESRARGYTPGRFSFNVRGGRC
                     EACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEARE
                     FFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYIL
                     DEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGE
                     ILVSGTPETVAECEASHTARFLKPML"
     gene            5678..6193
                     /gene="ssb1"
                     /locus_tag="JN125_003404"
     CDS             5678..6193
                     /gene="ssb1"
                     /locus_tag="JN125_003404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005224583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein SSB1"
                     /protein_id="HAY8873061.1"
                     /translation="MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDK
                     ATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEV
                     VVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQQPQGGNQFSGGAQSRPQQSAPAAPSNE
                     PPMDFDDDIPF"
     gene            complement(6292..6573)
                     /locus_tag="JN125_003405"
     CDS             complement(6292..6573)
                     /locus_tag="JN125_003405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313069.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873062.1"
                     /translation="MATLTTGVVLLRWQLLSAVMMFLASTLNIRFRRSDYVGLAVISS
                     GLGVVSACWFAMGLLGITMADITAIWHNIESVMIEEMNQTPPQWPMILT"
     gene            7003..>7730
                     /gene="pdeC"
                     /locus_tag="JN125_003406"
     CDS             7003..>7730
                     /gene="pdeC"
                     /locus_tag="JN125_003406"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-di-GMP phosphodiesterase PdeC"
                     /protein_id="HAY8873063.1"
                     /translation="MSHRARHQLLALPGIIFLVLFPIILSLWIAFLWAKSEVNNQLRT
                     FAQLALDKSELVIRQADLVSDAAERYQGQVCTPAHQKRMLNIIRGYLYINELIYARDN
                     HFLCSSLIAPVNGYTIAPADYKREPNVSIYYYRDTPFFSGYKMTYMQRGNYVAVINPL
                     FWSEVMSDDPTLQWGVYDTVTKTFFSLSKEASAATFSPLIHLKDLTVQRNGYLYATVY
                     STKRPIAAIVATSYQRLITHFYNHL"
BASE COUNT         1967 a         1888 c         1863 g         2012 t
ORIGIN      
        1 cttcctttcc ctattttttc gtgtggagta ataatttctg cacatctaac cattattaaa
       61 tttaataata agtatcgggt ttgttacgat agaatatttc tatatcctca agaatatgct
      121 ttgccttatt gcctgtgact ttctgagatt caattatagt atcgttaaat tctaatgtta
      181 aagagaactc tttttttccg ctttgtgtaa gtttaacctt atattgatta ccaatatcaa
      241 ataaaaaggt cctgtaatga gaataatcac ctttaacctc ctcggcaaaa cagcaaagcg
      301 tgcaaatata cataaagtct ttcttacccc tgattttgtt aactaaatca ataaatgcgt
      361 gaaaaacttt acttgcaata gaacttgata cttcttctcc aggtctacaa aaatcttttg
      421 caatttttaa ctgtgtttct atgtataaaa agaaatcttt gacataagaa aaatctttgg
      481 cataagagat atctttatta tttagtgcat ctagctcaac aggtaaagat gtcgttttgt
      541 tgctattcat atatgatata ttcatatcat catctccatc gcgagtaata aaattaatca
      601 ccattgtagg atagggttct ggtcaatcag gaatcatctt tataaacttc gattgttttt
      661 gtaatgctgt atcattaagt tcattaaatc gtacagcaga taaatgttct atcaaatttc
      721 gctcatttgc agaggattca tcataataaa cgtaaaatta atgtatcctt acatcgagta
      781 ataaacattt tttatacaaa aaaagacagg aacgtattta ctgggttaaa tataatcatc
      841 ctgcttttca tcacaaaaac cgcagataat ccttcctttt ccctgcagct ggcgttatgg
      901 tcagatggtt tttgcaacaa atctcacaat aaaaagtttc aacatactga ctatttaggg
      961 aaaaatatgc gcaagatcac acaggcaatc agtgccgttt gcttattgtt cgctctaaac
     1021 agttccgctg ttgccctggc ctcatctcct tcaccgctta accctggtac taacgttgcc
     1081 aggcttgctg aacaggcacc aattcattgg gtttcggtcg cacaaattga aaatagcctc
     1141 gcagggcgtc cgccaatggc ggtggggttt gatatcgatg acacggtact tttttccagc
     1201 ccgggcttct ggcgcggcaa aaaaaacttc tcgccagaaa gcgaagatta tctgaaaaat
     1261 cctgtgttct gggaaaaaat gaacaatggc tgggatgaat tcagcattcc aaaagaggtc
     1321 gctcgccagc tgattgatat gcatgtacgc cgcggtgacg cgatcttctt tgtgactggt
     1381 cgtagtccga cgaaaacaga aacggtttca aaaacgctgg cggataattt tcatattcct
     1441 gccaccaaca tgaatccggt gatctttgcg ggcgataaac cagggcaaaa tacaaaatcg
     1501 caatggctgc aggataaaaa tatccgaatt ttttatggcg attctgataa tgatattacc
     1561 gccgcacgcg atgtcggcgc tcgtggtatc cgcattctgc gcgcctccaa ctctacctac
     1621 aaacccttgc cacaagcggg tgcgtttggt gaagaggtga tcgtcaattc agaatactga
     1681 cagagcggga gagcgtgatg ctctcccgaa tgctgttttt ttaatcacac ctttatcctt
     1741 tcgctgtctt gctgcaaact gattaagaga gttttatcaa ggagcagcac atgtggtatc
     1801 aaaagacgct cacgcttagc gccaaatctc gtgggtttca tctggtaacg gatgaaattc
     1861 tgaatcagct ggctgatatg ccgcgcgtta acatcggctt actgcatctg ttgctgcaac
     1921 atacctccgc ctctctgaca cttaatgaga actgcgatcc caccgtacgc cacgacatgg
     1981 agcgtttttt cctccgcacc gttcccgaca acggaaatta tgagcatgac tatgagggag
     2041 cagacgatat gccttctcat atcaaatcct caatgcaggg aacatcgctt gtattgccgt
     2101 tacataaagg gcgtattcag accggcacct ggcaaggcat ctggctgggg gaacatcgca
     2161 tccacggcgg atcgcgtcgc atcatcgcga cactacaagg ggagtaaaaa atgaccattt
     2221 cggagttgct acaatattgc atggcaaaac caggcgcaga acagagcgtg cataacgact
     2281 ggaaagcgac gcagatcaaa gtggaagatg tgctgtttgc gatggtgaaa gaagtagaaa
     2341 atcgcccagc tgtttcgctg aaaaccagcc cggagctggc ggagctgcta cgtcagcagc
     2401 acagcgatgt gcgtcctagc cgccatctga ataaagcgca ctggagcacc gtgtatctcg
     2461 acggttcgct gccggattcg caaatctatt atctggtgga tgcgtcttat cagcaggcag
     2521 tgaatttact accggaagaa aagcgtaaat tgctggtaca actctgaaag gaaaaggccg
     2581 ctcagaaagc ggccttaacg attacagcat cggcttgagg aagcgtgccg tatgcgaagc
     2641 ttcgcactcc gcgacggttt ctggcgtacc ggagacgagg atttcgccgc cgccactgcc
     2701 gccttctggt cccaggtcga caatccagtc agcggttttg atcacgtcga gattgtgctc
     2761 aatcaccaca atggtattgc cctgatcgcg cagtttatgc agcacgtcga ggagttgctg
     2821 aatatcggcg aagtgcagac cggtggtcgg ctcgtcgaga atatacagcg tctgcccggt
     2881 gccacgtttt gacagctcac gcgccagctt cacgcgctgg gcttcaccac cagaaagtgt
     2941 ggttgcggac tgccccaggc gaatgtacgt cagaccaacg tccatcaacg tttgcagctt
     3001 acgcgccaga gctggcaccg catcaaagaa ctcacgcgcc tcttcgatgg tcatatccag
     3061 cacttcgtgg atggttttgc ctttgtactt aatttccagt gtttcacggt tatagcgttt
     3121 acctttgcac tgatcgcacg gcacgtagat atccggcagg aagtgcatct ccactttgat
     3181 cacaccgtcg ccctgacagg cttcgcagcg cccgccacgg acgttaaagc tgaaacgtcc
     3241 tggcgtataa ccacgcgcac gggattccgg tacgcccgca aacagttcgc gcacaggtgt
     3301 aaacacgccg gtataggtcg ccgggttaga acgtggagta cgaccaattg ggctttggtc
     3361 gatatcgatc actttatcga aatgctccag cccctgaata tcgcgatacg gtgccggttc
     3421 ggcgatggtc gcaccattca actggcgttg ggcaatcggg aacagtgtgt cgttaatcag
     3481 cgtcgattta ccggaacctg aaacccctgt gatgcaggta aacagaccga ctggcagcgt
     3541 gagcgtcacg tccttcaggt tgttgccgcg tgcacctgtc agcttcagca ctttttctgg
     3601 attcgccgga acgcgtttct tcggcacttc aatcttgcgt ttaccgctca tgtactgccc
     3661 ggtcaacgat tcaggcaccg ccatgatcgc ttccagcgga ccttctgcga ccacttcacc
     3721 gccgtgaaca cccgcaccag gaccgatatc gatcacatgg tcagcggcgc gaattgcgtc
     3781 ttcgtcatgc tccaccacaa tcacggtatt accgagatcg cgcagatgga taagcgtacc
     3841 caacaggcgc tcgttatcgc gctggtgcag gccgatagac ggctcgtcca gtacatacat
     3901 aacgccaacc aggcccgcac caatctggct cgccagacgg atacgctggg cttcaccgcc
     3961 ggaaagtgtt tctgccgagc gggaaagtgt caggtaattc aggccgacgt taacgaggaa
     4021 tttcagacga tcgccgatct ctttaaggat tttttctgca atcttcgccc gctgaccagc
     4081 tagtttgaga ttgttgaaga attccatcgc atgaccgatg ctcatgtcgg agatagcagg
     4141 cagcggcgta ttctcgacat aaacgtggcg cgcttcccga cgcagacgcg tcccttcgca
     4201 gctggcgcat gggcgattgc tgataaactt ggctaattct tcacgtaccg cactggattc
     4261 tgtctcttta taacggcgct ccatattgtg cagcacgcct tcgaacggat gacgacggat
     4321 ggaggtatcg ccacgatcgt tcatgtattt gaattcaatg ttttctttgc cagaaccgta
     4381 caacaccact ttatgcacgt tcgcgctcag gctgccccac ggcgcttcga cgtcgaactt
     4441 atagtgatct gccagcgatt tcagcatctg gaagtaatag aagttgcggc gatcccagcc
     4501 acggatcgca ccgccagcca gtgacagctc ggggttttgg atcacgcggt caggatcgaa
     4561 atattgctgt acgccaaggc cgtcacaggt tgggcaggca cctgccgggt tgttaaacga
     4621 aaacagtcgt ggctccagtt cacgcatact gtagccgcaa attgggcagg cgaagttggc
     4681 ggagaacagc agctcttccg ctttcgggtc gtccatatcc gccactaccg ctgtaccacc
     4741 ggaaagctcc agcgcggttt caaacgactc cgcaagacgt tgggtaagat cgtcacgcac
     4801 cttgaagcga tcaaccacca cttcaatagt gtgtttcttt tgcagttcca gtttcggcgg
     4861 atcggaaaga tcgcagactt cgccatcaat acgagcacgg atgtaaccct ggcttgctag
     4921 gttctccagc gttttggtgt gttcgccttt gcgctcttta atgattggcg cgagtagcat
     4981 cagacgcttg ccttccggct gcgacagcac gttatccacc atctggctga cggtttgcgc
     5041 cgccagcggg acgtcgtggt ccggacagcg cggttcgccg acgcgggcga acaacaaacg
     5101 caaatagtcg tggatttcgg tgattgtccc caccgtagaa cgcgggttat gagacgtcga
     5161 tttctgctca attgagatgg caggagaaag cccctcaata tgatcgacgt ccggcttttc
     5221 catcagtgac agaaactgcc gcgcataggc ggaaagggat tcaacgtaac ggcgctgccc
     5281 ttcggcatat aaggtgtcga aagcgagcga ggatttgcca gaacccgaaa gcccggtcac
     5341 gacaatgagc ttgtcgcggg ggataacgag gttgatgttt ttgagattat gggtgcgggc
     5401 gccccgaact tcgatcttat ccattcacct ttcccggatt aaacgctttt ttgcccggtg
     5461 gcatggtgct accggcgatc acaaacggtt aattatgaca caaattgacc tgaatgaata
     5521 tacagtattg gaatgcatta tccggagtgt tgtgtaacaa tgtctggcca ggtttgtttc
     5581 ccggaaccga ggtcacaaca tagtaaaagc gctattggta atggtacaat cgcgcgttta
     5641 cacttattca gaacgatttt tttcaggaga cacgaacatg gccagcagag gcgtaaacaa
     5701 ggttattctc gttggtaatc tgggtcagga cccggaagta cgctacatgc caaatggtgg
     5761 cgcagttgcc aacattacgc tggctacttc cgaatcctgg cgtgataaag cgaccggcga
     5821 gatgaaagaa cagactgaat ggcaccgcgt tgtgctgttc ggcaaactgg cagaagtggc
     5881 cagcgaatat ctgcgtaaag gttctcaggt ttatatcgaa ggtcagctgc gtacccgtaa
     5941 atggaccgat caatccggtc aggatcgcta caccacagaa gtcgtggtga acgttggcgg
     6001 caccatgcag atgctgggtg gtcgtcaggg tggtggcgct ccggcaggtg gtaatatcgg
     6061 tggtggtcag cctcagcagc cgcagggtgg caatcagttc agcggcggcg cgcagtctcg
     6121 cccgcagcag tccgctccgg cagcgccgtc taacgagccg ccgatggact ttgatgatga
     6181 cattccgttc tgatttgtca ttaaaacaat aggttatatt gttttaaggt ggatgattaa
     6241 agcatctgcc agccataaaa aagaagcctc cgttatggag gcttctacgt atcaggtcaa
     6301 aatcattggc cattgtggcg gtgtctgatt catctcttct atcatcaccg actcgatgtt
     6361 gtgccagata gcggtgatgt ccgccattgt gatgccaagc aaccccattg cgaaccaaca
     6421 ggcggaaaca acgcccagac cgctgctgat caccgcaagc ccgacataat cagaccgacg
     6481 aaaacggatg ttgagtgtgc tggccagaaa catcattacg gcactaagaa gttgccagcg
     6541 aagaagaacc acgccagtgg tgagggtagc catcaaacaa ttcctctgaa aagagccgat
     6601 gccctggaca gcgcggcgtt gttcacggga ggcgtggtac actctggcta tcgcggggct
     6661 tgcagaacac aaaaatgaaa cactctgttt gtttcattaa ttttgtgaaa tatatcacaa
     6721 ttgattgttt gttagccata ttaggccgtg acttttattg ctgtacagat tatgtggttt
     6781 ttcagtggca ttaagggcat atcttcccgc cgcctctgca ttcctgtagg aaattaattt
     6841 tgaatatcaa tgaattattt tcatccaggt gacgattaga aaggtatcaa tttcaaatca
     6901 ggcaaaagtg ctatttatac cgtaagattt atctaaagac gtcggtaccc agggttttca
     6961 ccttacaatg gccgggtata aacaggcagg aaattgatag caatgagtca tcgtgcacga
     7021 caccaattac tggcgttgcc gggcattatc tttttagttc tctttcccat cattctttcg
     7081 ctatggattg ccttcctttg ggcaaaatca gaagtgaata atcagctccg aacctttgct
     7141 caactggcac tggataaatc cgagctggtc attcgccagg cagatttagt gagcgatgca
     7201 gctgaacgct atcaggggca agtttgcact ccagcccatc aaaagcgaat gttgaatatt
     7261 attcgtggct atctttatat taatgaattg atctatgccc gtgataacca ttttttatgc
     7321 tcatcgctga tagcgcctgt aaacggctat acgattgcac cggccgatta taagcgtgaa
     7381 cctaacgttt ctatctatta ttaccgcgat acgccttttt tctctggcta taaaatgacc
     7441 tatatgcagc ggggaaatta tgtggcggtt atcaaccctc tcttctggag tgaagtgatg
     7501 tctgatgatc cgacattgca atggggtgtg tatgatacgg tgacgaaaac ctttttctcg
     7561 ttaagcaaag aggcctcggc agcaacgttt tctccgctga ttcatttgaa ggatttaacc
     7621 gtacaaagaa atggctattt atatgcgaca gtttattcga caaaacgccc aattgcagcc
     7681 attgttgcga cttcatatca acgtcttata acccattttt ataatcatct
//
LOCUS       DADMHM010000184         7711 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.187, whole genome shotgun sequence.
ACCESSION   DADMHM010000184 DADMHM010000000
VERSION     DADMHM010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7711)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7711)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7711
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.187"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            162..305
                     /locus_tag="JN125_003407"
     CDS             162..305
                     /locus_tag="JN125_003407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YobF family protein"
                     /protein_id="HAY8873064.1"
                     /translation="MCGIFSKEVLSKHVDVEYRFSAEPYIGASCSNVSVLSMLCLRAK
                     KTI"
     gene            318..527
                     /gene="cspE"
                     /locus_tag="JN125_003408"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
     CDS             318..527
                     /gene="cspE"
                     /locus_tag="JN125_003408"
                     /gene_synonym="gicA"
                     /gene_synonym="msmC"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator/RNA stability
                     regulator CspE"
                     /protein_id="HAY8873065.1"
                     /translation="MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTL
                     AEGQNVEFEIQDGQKGPAAVNVTAI"
     gene            693..1502
                     /gene="rlmA"
                     /locus_tag="JN125_003409"
     CDS             693..1502
                     /gene="rlmA"
                     /locus_tag="JN125_003409"
                     /EC_number="2.1.1.187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (guanine(745)-N(1))-methyltransferase"
                     /protein_id="HAY8873066.1"
                     /translation="MSFSCPLCHQPLSREKNSYICPQRHQFDMAKEGYVNLLPVQHKR
                     SRDPGDSAEMMQARRAFLDAGHYQPLRDAIVAQLRERLDDKATAVLDIGCGEGYYTHA
                     FADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK
                     AEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQSAELCY
                     PMRLRGDEAVALLQMTPFAWRAKPEVWQTLAAKEVFDCQTDFNIHLWQRSY"
     gene            complement(1499..2065)
                     /gene="mntP"
                     /locus_tag="JN125_003410"
     CDS             complement(1499..2065)
                     /gene="mntP"
                     /locus_tag="JN125_003410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP"
                     /protein_id="HAY8873067.1"
                     /translation="MNITATVLLAFGMSMDAFAASIGKGATLHKPKFSEALRTGLIFG
                     AVETLTPLIGWGMGMLASRFVLEWNHWIAFVLLIFLGGRMIIEGFRGADDEDEEPRRR
                     HGFWLLVTTAIATSLDAMAVGVGLAFLQVNIIATALAIGCATLIMSTLGMMVGRFIGS
                     IIGKKAEILGGLVLIGIGVQILWTHFHG"
     gene            complement(2493..2951)
                     /locus_tag="JN125_003411"
     CDS             complement(2493..2951)
                     /locus_tag="JN125_003411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF986 domain-containing protein"
                     /protein_id="HAY8873068.1"
                     /translation="MTITDLVLILFIAALLAFAIYDQFIMPRRNGPTLLAIPLLRRGR
                     IDSVIFVGLIVILIYNNVTNHGALITTWLLSALALMGFYIFWIRVPKIIFKQKGFFFA
                     NVWIEYSLIKAMNLSEDGVLVMQLEQRRLLIRVRNIDNLEKIYKLIVSTQ"
     gene            complement(3006..3857)
                     /locus_tag="JN125_003412"
     CDS             complement(3006..3857)
                     /locus_tag="JN125_003412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020804907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IID"
                     /protein_id="HAY8873069.1"
                     /translation="MVDTTQTTTEKKLTQSDIRGVFLRSNLFQGSWNFERMQALGFCF
                     SMVPAIRRLYPENNEARKQAIRRHLEFFNTQPFVAAPILGVTLALEEQRANGAEIDDG
                     AINGIKVGLMGPLAGVGDPIFWGTVRPVFAALGAGIAMSGSLLGPLLFFILFNLVRLA
                     TRYYGVAYGYSKGIDIVKDMGGGFLQKLTEGASILGLFVMGALVNKWTHVNIPLVVSR
                     ITDQTGKEHVTTVQTILDQLMPGLVPLLLTFACMWLLRKKVNPLWIIVGFFVIGIAGY
                     ACGLLGL"
     gene            complement(3870..4670)
                     /locus_tag="JN125_003413"
     CDS             complement(3870..4670)
                     /locus_tag="JN125_003413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002910918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HAY8873070.1"
                     /translation="MEITTLQIVLVFIVACIAGMGSILDEFQFHRPLIACTLVGIVLG
                     DMKTGIIIGGTLEMIALGWMNIGAAVAPDAALASIISTILVIAGHQSIGAGIALAIPL
                     AAAGQVLTIIVRTITVAFQHAADKAADNGNLTAISWIHVSSLFLQAMRVAIPAVIVAL
                     SVGTSEVQNMLNAIPEVVTNGLNIAGGMIVVVGYAMVINMMRAGYLMPFFYLGFVTAA
                     FTNFNLVALGVIGTVMAVLYIQLSPKYNRVAGAPAQAAGNNDLDNELD"
     gene            complement(4733..5704)
                     /gene="manX"
                     /locus_tag="JN125_003414"
     CDS             complement(4733..5704)
                     /gene="manX"
                     /locus_tag="JN125_003414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
                     /protein_id="HAY8873071.1"
                     /translation="MTIAIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAET
                     LIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNAASRIVVDKEHYEVIAGVNIPMLVETL
                     MARDDDPSFDELVALAVETGREGVKALKAKPVEKAAPAPAAAAPKAAPTPAKPMGPND
                     YMVIGLARIDDRLIHGQVATRWTKETNVSRIIVVSDEVAADTVRKTLLTQVAPPGVTA
                     HVVDVAKMIRVYNNPKYAGERVMLLFTNPTDVERLVEGGVKITSVNVGGMAFRQGKTQ
                     VNNAVSVDEKDIEAFKKLNARGIELEVRKVSTDPKLKMMDLISKIDK"
     gene            6167..>7711
                     /gene="yoaE"
                     /locus_tag="JN125_003415"
     CDS             6167..>7711
                     /gene="yoaE"
                     /locus_tag="JN125_003415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CNNM family cation transport protein YoaE"
                     /protein_id="HAY8873072.1"
                     /translation="MEFLMDPSIWAGLLTLVVLEIVLGIDNLVFIAILADKLPPKQRD
                     KARLLGLSLALIMRLGLLSLISWMVTLTKPLFTVMDFSFSGRDLIMLFGGIFLLFKAT
                     TELHERLENRDHDSGHGKGYASFWVVVTQIVILDAVFSLDAVITAVGMVNHLPVMMAA
                     VVIAMAVMLLASKPLTRFVNQHPTVVVLCLSFLLMIGLSLVAEGFGFHIPKGYLYAAI
                     GFSIIIEVFNQIARRNFIRHQSTLPLRARTADAILRLMGGKRQANVQHDADNPMPIPE
                     GAFAEEERYMINGVLTLASRSLRGIMTPRGEISWVDANLGVDEIREQLLSSPHSLFPV
                     CRGELDEIIGIVRAKELLVALEEGVDVAAIASASPAIIVPETLDPINLLGVLRRARGS
                     FVIVTNEFGVVQGLVTPLDVLEAIAGEFPDADETPEIITDGDGWLVKGGTDLHALQQA
                     LDVEHLADDDDIATVAGLVISANGHIPRVGDVIDVGPLHITIIEANDYRVDLVRIVKE
                     QPAHDED"
BASE COUNT         1954 a         1889 c         1921 g         1947 t
ORIGIN      
        1 caatgatata tcggcgcgta ttccgttgca taagtgtgca aaaaaagtgg aagacgtatc
       61 gagatttgtg cgtctgatcg agacatgttt aaaaatggct tgccataatt aacgttgtat
      121 gtgataacag atttcgggtt aaacgaggta cagttctgtt tatgtgtggc attttcagta
      181 aagaagtcct gagtaaacac gttgatgttg aataccgctt ctctgccgag ccttatattg
      241 gtgcctcatg cagtaatgtg tcagttttat ctatgttatg cctgcgggcg aagaaaacaa
      301 tctaaggaat ttttcaaatg gcaaagatta aaggtcaggt aaagtggttc aacgagtcta
      361 aaggttttgg cttcattact ccggctgatg gcagcaaaga cgtgttcgta cacttctccg
      421 ctatccaggg taatggcttc aaaactctgg ctgaaggtca gaacgttgag ttcgaaattc
      481 aggacggcca gaaaggtccg gcagctgtta acgtaacagc tatctgatcg aatccactga
      541 tctgaagtgt gaatacgctt caatctcgct ataaagcctc gtcgaatgcg aggcttttta
      601 ctatgcttta tcttcgctcc tggcgttcgg atatttgccc gccgcgtgat tcgcgttaca
      661 cttgcggcct ttagtatcct gccggagttg tcatgtcttt ttcctgtcca ctttgccatc
      721 agcctctttc gcgtgaaaaa aacagctata tctgtcccca gcgacatcag tttgatatgg
      781 cgaaagaagg gtatgtcaat ctgctgcccg ttcagcataa acggtctcgt gatccgggcg
      841 acagcgcgga aatgatgcaa gcacgccgcg cattcttaga tgccggacat tatcagccgc
      901 tgcgtgatgc aattgtcgcc caactgaggg aacggcttga tgataaggcc acggcggtgc
      961 tggatattgg ctgtggtgaa gggtattaca cacacgcatt tgccgatgcg ttgcccgaaa
     1021 tcaccacgtt tggtctggat gtttcgaagg tagcgataaa agcggcggcg aaacgctatc
     1081 cgcaggtcac tttttgtgtc gcttccagcc accgtttgcc gttttccgat accagtatgg
     1141 acgccataat acgtatttac gcgccgtgta aagcagaaga attagcacga gtagtgaagc
     1201 ccggcggctg ggtcattact gccacgccgg gaccgcgaca tttgatggag ctgaaggggc
     1261 tgatttacaa tgaagtacat cttcatgcac ctcatgcaga acaactggaa ggttttacat
     1321 tacagcagag tgcggagttg tgttatccga tgcgtcttcg cggtgatgaa gccgtcgcat
     1381 tattgcagat gacgccgttt gcctggcgtg cgaagccaga agtctggcaa acactggcag
     1441 caaaagaagt gttcgactgc cagacggact ttaatattca cctctggcag cgttcttatt
     1501 aaccgtggaa gtgcgtccag aggatctgga cgccgatgcc gatcagtacc agcccgccga
     1561 gaatttccgc ttttttccca ataattgagc cgataaagcg accaaccatc atccctaatg
     1621 ttgacataat caaggttgca caaccaatgg ccaatgcggt cgcgataatg ttgacctgca
     1681 ggaaagcaag accaacaccc acagccatgg catccaggct ggtggcaatc gcggtggtta
     1741 ccagtagcca gaaaccgtgt cgacggcgcg gctcttcatc ttcatcatct gcgccacgaa
     1801 aaccctcaat aatcattcgc ccgccgagga atatcagcag cacaaacgca atccagtggt
     1861 tccattcaag gacaaaccgg ctggctaaca tgcccattcc ccagccgatc agcggcgtca
     1921 gggtttcgac ggcaccaaaa ataaggccgg ttcgcaatgc ttcagaaaat ttcggtttat
     1981 ggagggtggc acctttaccg attgatgcag caaatgcatc catcgacata ccaaacgcaa
     2041 gaagaacagt agcagtgata ttcatgacaa tgtcctgacc ggggtatcca taaaacacat
     2101 catcgccccc agcaaacatg catacatgaa caacaagccg tgatggtttt cgcgttcatg
     2161 caggcatagc gattgatgtg catatggtct cgcctgactg aaagtattca gtccgtacgt
     2221 gccacgtttt gcaacgagta tgttgacacg tacatttccg gaatctggaa atcggctact
     2281 ccccaaatga gggcgcaacc ttaacatatt ttgagaatat aaaacaactg ttggaatata
     2341 ttatttcatt gctttattga taacgaattc atttagattt atatatcaat gaaacgttaa
     2401 aataaataac aaataaggga agaggtaata tagcctaagc tatgtctgat tattaaaaat
     2461 acactaaaca tagctttggc taaattcata acttattgag ttgaaacgat aagcttataa
     2521 attttttcca gattgtcgat atttcgaacg cggattaaca gccgacgctg ttctaattgc
     2581 atcaccaaca cgccatcttc cgacaagttc atcgctttga ttaggctata ttcaatccag
     2641 acattggcga agaaaaaacc tttttgttta aagatgatct tcggaacgcg gatccagaat
     2701 atataaaaac ccatcagagc cagtgcgctt aataaccatg tcgttattaa cgcaccatga
     2761 ttcgtgacgt tgttatagat aagaatgaca atcaatccga cgaagataac gctatcgatg
     2821 cgaccacgcc ggagcaaagg aattgccagc agggtggggc cgttacggcg gggcatgatg
     2881 aactgatcgt agatcgcgaa ggccaggagt gcggcgatga aaagaatcag taccaggtcc
     2941 gtgattgtca ttaatcctcc agataaaaaa acggggccaa aaggccccgg tagtgtacaa
     3001 cagtcttaca gtcccagcag gccgcaagcg taaccagcga taccgatgac gaagaagcca
     3061 acgatgatcc acagcgggtt aacttttttg cgcagtagcc acatacaagc aaaggtcagc
     3121 agcagtggta ccaggcctgg cattaactgg tccagaatag tctggacagt agtaacgtgt
     3181 tctttgcccg tctggtcagt aatgcgagag acaaccagcg ggatgttgac atgtgtccac
     3241 ttgttaacca atgcccccat gacaaacagg ccgaggatag acgccccttc cgtcagtttt
     3301 tgcaggaagc caccacccat atctttaacg atatcgatac ctttggagta accatacgct
     3361 acgccgtagt aacgggttgc cagacgcacc aggttaaaca ggatgaagaa cagcagcgga
     3421 cctaacaggc tgccgctcat cgcgataccg gcacccagtg ctgcaaatac cggacgtacg
     3481 gttccccaga agatcgggtc gcctacacca gccagcggcc ccatcaaacc gactttgata
     3541 ccgttgatag caccgtcgtc gatctctgcg ccattagcac gctgttcttc cagcgccagg
     3601 gttacgccga gaatcggcgc agccacgaac ggctgggtgt taaagaactc caggtgacgg
     3661 cgaatagctt gtttacgagc ttcgttgttc tcagggtaga ggcgacgaat tgccggtacc
     3721 atagagaagc agaaacccag tgcctgcata cgttcgaagt tccatgaacc ctggaagagg
     3781 ttagaacgca ggaagacgcc acgaatatca ctttgagtga gttttttctc ggtggtagtt
     3841 tgagttgtat caaccatttc gctcacctgt tagtccagtt cattatcgag atcgttgtta
     3901 ccagcagcct gagcaggcgc accggctacg cggttgtatt tcgggctaag ttggatgtag
     3961 agcactgcca taacagtacc gatcacaccc agagcaacca ggttaaagtt ggtgaatgct
     4021 gcggttacga agccgaggta gaagaacggc atcaggtagc cagcacgcat catgttgata
     4081 accatcgcat aaccaaccac cacgatcatg ccaccggcga tattcagacc attggtcacc
     4141 acttccggaa tcgcattcag catgttctgt acttcgctgg taccaacaga cagcgcaacg
     4201 atgacggccg gaatagccac acgcattgct tgcaggaaca gagaagaaac gtggatccag
     4261 gaaatcgctg tcaggttgcc gttatcagca gccttatccg cagcgtgctg gaaagcaacg
     4321 gtaatagtac gaacgatgat ggtcagtacc tggcccgcag cggccagagg gattgccagt
     4381 gcgatacctg caccaatgct ctgatgacct gcgataacca gaatggtaga aatgatagaa
     4441 gccagagcgg cgtcaggcgc aactgcagca ccgatgttca tccagcccag cgcgatcatt
     4501 tccagcgtac caccgataat aataccggtt ttcatatccc caagaacgat acccaccagg
     4561 gtacacgcga ttagcggacg gtgaaactga aattcatcga ggattgatcc catacctgcg
     4621 atacaggcta cgataaatac cagcacaatt tgaagagtgg taatctccat tgtacttctc
     4681 ctgtttacgt aagacttaag tgtgaaaact gagtgataat caacacaata cgttacttat
     4741 cgattttgct gatcagatcc atcattttca gtttcggatc ggtggaaacc ttacggactt
     4801 ccagctcaat accgcgcgca ttcagtttct tgaacgcctc gatatctttt tcatcaaccg
     4861 aaaccgcgtt attcacctgg gttttacctt gacggaatgc cataccaccg acgttaacag
     4921 aggtgatttt cacgccgcct tcaacgagac gctctacatc tgttgggttg gtaaataaca
     4981 gcattacgcg ttcgccagca tatttcgggt tgttgtagac gcgaatcatt ttggcaacat
     5041 caactacgtg tgctgttacg cccggaggtg caacctgggt gagcagtgtc ttacgaacgg
     5101 tatccgcagc cacttcatca ctaacaacaa taatacggga gacattggtt tctttggtcc
     5161 agcgggtggc gacctgaccg tgaatcagac ggtcgtcgat acgcgcaagg ccaataacca
     5221 tgtagtcgtt tggccccatt ggttttgccg gagttggagc cgcttttggt gctgcggcag
     5281 cgggtgctgg cgcggctttt tcaaccggtt tggctttcag tgctttcacg ccttcacggc
     5341 ctgtttctac tgccagcgca accagttcat caaagcttgg gtcatcatca cgagccatta
     5401 acgtttccac gagcattgga atgttaacgc ctgcaatgac ttcataatgc tctttgtcga
     5461 cgacaatgcg gctggcagca ttgaacgggc tgcctcccca tgtatcaacg agaaacagca
     5521 cgcctttagt ggtgtcgagt tttgccaact gagcgttgta cttttcaatc agcgtttcgg
     5581 cattttcacc tggaacgaaa tcgatccagc cgacgttttc ctgctcgcct aacagcattt
     5641 ctgccgtttt aagcaactgc tctgcagccc aaccatgtgt gcctataaca atagcaatgg
     5701 tcacttgcta cctcctttat tatcgttaac acctcaacgt gccagatgta tttttgaatc
     5761 gtcgtccaca atcgaatcga ttcagataag ggctacaacc aaaaacccct gcgtttcgcg
     5821 atttatttta gatatcgaaa aaattatttt atgtgatgaa gatccgtaat ttaactttcg
     5881 attagcagaa atttcgaaag gtaaaatatc cttgtcacat tcgtttgcaa aggaaggtaa
     5941 atctttgcca aatcagaggc gtctctgata tgtttaactc ccgtttaaca accatggagt
     6001 atagggcagt agcccgcagt atggatcgtc accgacgtca tttcagcatc aggcctttta
     6061 acgcctgcct ttctggcact ctatgccgca cctttcgttt gcattttgtc gttacgcctg
     6121 cattatttct ggcgtcgaat agctattcct taagcaggag cttgtcatgg aattcttaat
     6181 ggacccctca atttgggcgg ggctactcac gcttgttgtt ctcgaaattg tgctgggtat
     6241 cgataacctg gtcttcatcg ccattcttgc tgacaaactg ccgccaaaac aacgcgataa
     6301 agcgcgtttg ctggggttat cactggcgct gattatgcgt ctggggctgc tgtcgctgat
     6361 ttcatggatg gtcacgctga ccaaaccgct atttaccgtc atggatttct ccttctccgg
     6421 acgcgacctg attatgttgt tcggggggat attcttgctg ttcaaagcaa caaccgaact
     6481 gcatgaacgg ctggaaaacc gcgatcatga ttccggccac ggtaaaggct acgccagttt
     6541 ctgggtggtc gtcacacaga ttgtcatcct tgacgccgtc ttctcgttgg atgcggtaat
     6601 tactgcagta gggatggtta accatctgcc ggtgatgatg gcggcggtag tgattgcgat
     6661 ggcggttatg ttgctggcat ccaaaccgct gacgcgattc gttaaccagc accccacggt
     6721 ggtggtgctc tgtctgagct tcctgttaat gattggtctg agtctggtgg cagaaggttt
     6781 cggtttccac attccgaaag gttacctgta tgccgcgatt ggcttctcga tcatcatcga
     6841 agtgtttaac cagattgcgc gtcgcaactt tattcgccac cagtcgactt tgccgctgcg
     6901 agcgcgtact gccgatgcca tcctgcgttt gatgggcggg aaacgtcagg ccaatgttca
     6961 gcacgatgcc gataacccga tgccgatccc ggaaggtgca tttgccgaag aagaacgtta
     7021 catgattaac ggcgtactga cgctggcgtc gcgttctctg cgcgggatca tgacgccgcg
     7081 cggtgaaata agctgggttg acgctaatct cggggtcgat gaaatccgcg agcaactgct
     7141 ctcttcaccg cacagtctgt tcccggtatg tcgcggtgaa ctggatgaaa tcatcggtat
     7201 tgtacgtgct aaagaactgc tggtggcgct ggaagagggc gttgatgtgg cggcgattgc
     7261 ttcggcgtct ccggcgatta tcgtcccgga aaccctcgat ccgatcaacc tgttgggcgt
     7321 gctgcgtcgt gctcgcggga gctttgttat cgtgaccaac gagtttggtg tggtacaagg
     7381 tctggtcacg ccgctggatg tgctggaagc cattgcgggt gaattcccgg acgctgacga
     7441 aacgccggaa atcattactg atggtgacgg ctggctggta aaaggcggta cagatttgca
     7501 tgccttgcag caggcgcttg atgttgagca ccttgccgat gacgatgata tcgcgacggt
     7561 cgcgggcctc gtgatctcgg caaatggtca cattccccgt gtgggcgatg tgattgatgt
     7621 agggccactg catatcacca tcattgaagc caatgattat cgtgttgatc tggttcgcat
     7681 tgttaaagag caaccggcgc acgatgaaga t
//
LOCUS       DADMHM010000185         7677 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.188, whole genome shotgun sequence.
ACCESSION   DADMHM010000185 DADMHM010000000
VERSION     DADMHM010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7677)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7677)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7677
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.188"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            6..173
                     /locus_tag="JN125_003416"
     CDS             6..173
                     /locus_tag="JN125_003416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhfL family protein"
                     /protein_id="HAY8873073.1"
                     /translation="MNKFIKVALVGAVLATLTACTGHIENRDKNCSYDYLLHPAISIS
                     KIIGGCGPTAQ"
     gene            418..1806
                     /gene="frlA"
                     /locus_tag="JN125_003417"
     CDS             418..1806
                     /gene="frlA"
                     /locus_tag="JN125_003417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001324580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructoselysine/psicoselysine transporter"
                     /protein_id="HAY8873074.1"
                     /translation="MTANSPLQRVGQEKGIAMGSQELQRKLGFWAVLAIAVGTTVGSG
                     IFVSVGEVAKAAGTPWLTVLTFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKNAGS
                     RPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPIDPLPGKFIAAGLIIAFMLLHL
                     RSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGI
                     SATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISDLMPFDKL
                     ANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFF
                     KCFGHVHPKYNTPDVSIILQGALGLFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWC
                     RKRDDYKPLWRTPAFGLMTTLAIASSLILVASTFVWAPIPGLICAVIVIATGLPAYAF
                     WAKRSRQLNALS"
     gene            1827..2849
                     /gene="frlB"
                     /locus_tag="JN125_003418"
                     /pseudo
     CDS             1827..2849
                     /gene="frlB"
                     /locus_tag="JN125_003418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417830.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fructoselysine 6-phosphate deglycase"
     gene            2899..3729
                     /gene="frlC"
                     /locus_tag="JN125_003419"
     CDS             2899..3729
                     /gene="frlC"
                     /locus_tag="JN125_003419"
                     /EC_number="5.1.3.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructoselysine 3-epimerase"
                     /protein_id="HAY8873075.1"
                     /translation="MKTGMFTCGHQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDL
                     KAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEM
                     NAGYTLISAAHAGYLTPPNVIWGRLAENLSELYEYAENIGMDLILEPLTPYESNVVCN
                     ANDVLHALALVPSPRLFSMVDICAPYVQAEPVMSYFDKLGDKLRHLHIVDSDGTSDTH
                     YIPGEGKMPLRELMRDIIERGYEGYCTVELVTMYMNEPRLYARQALERFRALLPEDER
                     "
     gene            3726..4511
                     /gene="frlD"
                     /locus_tag="JN125_003420"
     CDS             3726..4511
                     /gene="frlD"
                     /locus_tag="JN125_003420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructoselysine 6-kinase"
                     /protein_id="HAY8873076.1"
                     /translation="MKTLATIGDNCVDIYPQLNKAFSGGNAVNVAVYCTRYGIQPGCI
                     TWVGDDDYGTKLKQDLARMGVDISHVHTKHGVTAQTQVELHDNDRVFGDYTEGVMADF
                     ALSEEDYAWLAQYDIVHAAIWGHAEDAFPQLHAAGKLTAFDFSDKWDSPLWQTLVPHL
                     DFAFASAPQEDETLRLKMKAIVARGAGTVIVTLGENGSIAWDGAQFWRQAPEPVTVID
                     TMGAGDSFIAGFLCGWSAGMTLPQAMAQGTACAAKTIQYHGAW"
     gene            4611..5342
                     /gene="phoB"
                     /locus_tag="JN125_003421"
     CDS             4611..5342
                     /gene="phoB"
                     /locus_tag="JN125_003421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417834.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator PhoB"
                     /protein_id="HAY8873077.1"
                     /translation="MSATDRYSHQLLYATVRQRLLDDIAQGVYQAGQQIPTENELCTQ
                     YNVSRITIRKAISDLVADGVLIRWQGKGTFVQSQKVENALLTVSGFTDFGVSQGKATK
                     EKVIEQERVSAAPFCEKLNIPGNSEVFHLCRVMYLDKEPLFIDSSWIPLSRYPDFDEI
                     YVEGSSTYQLFQERFDTRVVSDKKTIDIFAATRPQAKWLKCELGEPLFRISKIAFDQN
                     DKPVHVSELFCRANRITLTIDNKRH"
     gene            complement(5494..6579)
                     /locus_tag="JN125_003422"
     CDS             complement(5494..6579)
                     /locus_tag="JN125_003422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HAY8873078.1"
                     /translation="MKTFPLQSLTLIEAQQKQFALVDTICRHFPGAEFLTSGDLGLTP
                     GLNQPRITQRVEQVLADAFHAQAAALVQGAGTGAIRAGLAALLKPGQRLLVHDAPVYP
                     TTRVIVEQMGLTLITVDFNDLSALKQVVDEQQPDAALVQHTRQQPQDSYVLADVLATL
                     RAAGVPALTDDNYAVMKVARIGCECGANVSTFSCFKLFGPEGVGAVVGDADVINRIRA
                     TLYSGGSQIQGAQALEVLRCLVFAPVMHAVQAGVSERLLALLNGGAVPEVKSAVIANA
                     QSKVLIVEFHQPIAARVLEEAQKRGALPYPVGAESKYEIPPLFYRLSGTFRQANPQSE
                     HCAIRINPNRSGEETVLRILRESIASI"
     gene            complement(6591..>7677)
                     /locus_tag="JN125_003423"
     CDS             complement(6591..>7677)
                     /locus_tag="JN125_003423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873079.1"
                     /translation="LLNAWLLFLPTDILGVLAINSLMAFGLGAIWGVLILTCLLPVNQ
                     LLTALPVDVLGSLGELSSPVVSAFALFPLVAIFYQFGWKQSLVAAVVVLMTRVVVVRY
                     FPHLNPESIEIFIGMVMLLGIAITHDLRHRDENDIDASGLSVFEERTSRIIKNLPYIA
                     IVGALIAAVASMKIFAGSEVSIFTLEKAYSAGVTPEQSQTLINQAALAEFMRGLGFVP
                     LIATTALATGVYAVAGFTFVYAVGYLSPNPMVAAVLGAVVISAEVLLLRSIGKWLGRY
                     PSVRNESDNIRNAMNMLMEVALLVGSIFAAIKMAGYTGFSIAVAIYFLNESLGRPVQK
                     MAAPVVAVMITGILLNVLYWLGLFVPA"
BASE COUNT         1803 a         2140 c         1996 g         1738 t
ORIGIN      
        1 tgtaaatgaa caaatttatt aaagttgcac tggtaggtgc agtactggct acgttaactg
       61 catgtactgg tcatattgaa aaccgtgata agaactgctc ttacgactac ctgctgcacc
      121 cggcaatttc tatttctaaa atcattggcg gttgcggtcc tactgcacag taagtctctg
      181 acagaaatcg gctaacaccg gtttaattgc ccgacgccct ctggattttc cgagggcgta
      241 tttgtttcta tatccttctt gctccccacc cgtaaaaata ttttcacttt aatttcaatt
      301 ggataactac attcattagc cacagcgcga tcctgtgcga aattttgtga tcttcctccg
      361 cattacataa catcatatgt tattatattc atcatgcatt gttatgttac cttttaaatg
      421 actgcaaact ctcccctaca acgtgttgga caagaaaaag gtatcgctat gggaagccag
      481 gaactccaac gcaagctcgg attttgggcc gttcttgcaa tcgccgtcgg gacaaccgtc
      541 ggctccggta tttttgtatc tgtgggtgaa gtggcaaaag cagcgggcac gccgtggctt
      601 acggtgctca cgtttgtcat tggcgggtta attgtgatcc cgcaaatgtg cgtctatgcg
      661 gaactatcca ccgcttatcc ggaaaatggc gcagattatg tttatctgaa aaatgccgga
      721 agccgaccgc tggctttcct ctccggctgg gccagcttct gggccaacga tgcgccgtca
      781 ttgtcgatta tggcgctggc gattgtcagc aatcttggct ttttaacgcc tatcgatccg
      841 ttgcccggta aatttatcgc cgccggatta attatcgcct ttatgttgct acacctgcgc
      901 tccgttgaag gcggcgcagc gtttcagacg ctaattacca tcgccaaaat tatcccgttc
      961 actatcgtca ttggccttgg gatcttctgg tttaaagcgg agaattttgc cgcccctacc
     1021 accactgcga ttggcgcaac gggcagcttt atggcgctgc tggcggggat ctctgccacc
     1081 agttggtcgt ataccggcat ggcctctatc tgttatatga ccggcgaaat taaaaacccc
     1141 ggaaaaacca tgccacgagc gctgattggt tcctgtctgc tggttctggt gctctacacc
     1201 ctgctggcgc tggtgatttc cgacctgatg cccttcgaca aactcgccaa ttctgaaacg
     1261 ccgatttccg acgccctgac ctggatcccc gcactcggca gcaccgctgg gatctttgtt
     1321 gccatcacgg cgatgatcgt cattcttggt tcgctttcca gctgcgtgat gtaccagccg
     1381 cggctggaat acgcgatggc gaaagacaac ctgttcttta aatgcttcgg ccatgtgcat
     1441 ccgaaataca acacgccgga tgtctccatc atcctgcaag gggcgctggg gctcttcttc
     1501 atcttcgttt ccgatctcac cagcctgctg ggttatttca ccctggtgat gtgtttcaaa
     1561 aataccctca ccttcggctc catcatctgg tgtcgtaaac gcgacgatta caaaccgctg
     1621 tggcgtactc cggctttcgg gctgatgacc accctcgcca ttgcgtcaag cctcattctg
     1681 gtcgcctcaa cctttgtctg ggcaccgatt cccggcctta tctgcgccgt catcgttatt
     1741 gctactggtc tgcctgctta cgccttctgg gcgaagcgta gccgccagct caacgctttg
     1801 tcgtaatgtt atctggagaa aataaaatgt tggatattga taaaagcacc gtggactttc
     1861 tggtcaccga aaatatggtt caggaagtgg aaaaagttct cagccatgac gttccgctgg
     1921 tgcacgccat cgtggaagag atggtgacgc gcgacattga tcgtatttat ttcgttgcct
     1981 gcggctcgcc actcaacgcg gcgcaagcgg cgaaacatct ggcggatcgc ttttccgatc
     2041 ttcaggtcta cgccatttcc ggctgggagt tctgcgataa caccccgtat cgcctcgacg
     2101 atcgttgcgc ggtgattggc gtttctgact acggtaaaac ggaagaggta atcaaagcgc
     2161 tggagctggg ccgggcctgc ggcgcactca ctgcggcgtt caccaaacgc gcggacagcc
     2221 cgattacctc ggcggcggaa tttagcattg attatcaggc cgactgtatc tgggaaattc
     2281 acctgctgct ctgctacagc gtggtgctgg agatgatcac ccgcctcgcg ccgaacgcgg
     2341 aaatcggcaa gatcaaaaac gatctcaagc agttgccgaa tgcgctcggt catctggtac
     2401 gtacctagga agaaaaaggc cgccagcttg gtgaactggc cagccagtgg ccgatgattt
     2461 ataccgttgc tgcgggtccg ctgcgtccgc tgggttacaa agaaggcatt gtaacgctga
     2521 tggaatttac ctggacgcac ggctgcgtga ttgagagcgg agagttccgc catggcccgc
     2581 tggagattgt cgaaccgggc gttccgttcc tgttcctgct cggcaatgat gaaagtcgcc
     2641 acaccaccga acgcgccatt aactttgtta aacagcgtac tgacaacgtg atcgtcatcg
     2701 attacgccga aatttcgcaa gggctgcacc cgtggctggc accgttcctg atgttcgtgc
     2761 caatggagtg gctctgctac tacctgtcta tttacaaaga tcacaacccg gatgaacgcc
     2821 gctattacgg tggtctggtg gaatattaat ccctcgcccg gcccggcaac gggccggatt
     2881 tacgcaagga gttacccgat gaaaacaggt atgtttacct gcggccacca gcggctgcct
     2941 attgaacacg catttcgtga tgcaagcgag ctgggttacg acggcatcga aatttggggc
     3001 ggtcgcccgc acgcgttcgc gccggactta aaagcgggcg gcatcaaaca aatcaaggcg
     3061 ctggcgcaga cgtatcagat gccgattatc ggctatacgc cagaaaccaa cggctatccg
     3121 tataacatga tgctgggcga tgaacatatg cgtcgcgaaa gcctcgacat gatcaagctg
     3181 gcgatggata tggcaaaaga gatgaacgcg ggttatacgc tgatttccgc ggcccacgcg
     3241 ggctatctca cgccacctaa tgttatctgg ggacggctgg cagagaacct aagcgaactg
     3301 tatgagtacg cggaaaacat cggcatggat ctaatcctcg aaccgttaac gccgtatgaa
     3361 tcgaacgtcg tgtgtaatgc taatgatgtg cttcatgcgc tggcgctggt gccttcgccg
     3421 cgcctgttca gcatggtcga catttgcgcg ccgtatgtcc aggcggaacc ggtgatgagt
     3481 tatttcgaca aactgggcga taaattacgt catctgcata ttgtcgacag cgacgggacc
     3541 agcgacacgc attacattcc tggagaaggc aaaatgccgc tgcgggaact gatgcgcgat
     3601 attattgagc ggggctatga gggttactgt acggtggagc tggtgacgat gtatatgaac
     3661 gagcccagac tctatgcccg ccaggcgctg gaacgctttc gcgcgctgct gccggaggat
     3721 gagagatgaa aaccctggcg acaatcggcg ataactgcgt cgatatctac ccgcaactga
     3781 ataaagcgtt ttctggcggt aatgcggtca atgtggcggt gtactgcact cgctacggca
     3841 tacagccggg atgcattacc tgggtgggtg acgatgacta cggcacaaag ctgaagcagg
     3901 atctcgcccg catgggcgtc gatatcagcc atgtccatac gaaacacggc gttaccgcac
     3961 aaactcaggt ggaactgcac gacaatgatc gcgtttttgg cgactacacc gaaggcgtga
     4021 tggccgactt tgccctgagt gaagaggatt acgcctggct ggcgcagtat gacattgtgc
     4081 acgcggcaat ctggggacat gcggaagacg cattcccaca gctgcacgct gcgggcaaac
     4141 ttaccgcttt cgacttctcc gacaagtggg acagcccgct ctggcagaca ctggtgccgc
     4201 atctcgattt tgcctttgcc tccgcaccgc aagaagacga aacgctgcgt ctgaagatga
     4261 aagcgattgt tgcccgtggc gcaggaaccg tgattgtcac gctgggtgaa aacggcagca
     4321 ttgcctggga tggcgcgcag ttctggcgtc aggctcctga accggtgacg gttatcgaca
     4381 ccatgggtgc cggagattcg ttcattgccg gattcctttg cggctggtct gcggggatga
     4441 cattaccgca ggcgatggcg cagggaacgg cgtgcgcggc gaaaaccatt cagtaccacg
     4501 gtgcctggta ggtataacgt tggcgtgagc atcttcacgc caacgtgctg ttacttgctg
     4561 gaaaacgacc ctataatccg agtaattcat tctttatttc agggtcgatt atgtcagcta
     4621 cggaccgcta ctctcatcaa ctcctctacg ctaccgtccg ccagcgactg ctggatgata
     4681 tcgcgcaggg ggtttaccag gccgggcaac agatccctac cgaaaacgag ctttgtacac
     4741 aatataacgt cagccgcatt accattcgca aagccatcag cgacttagtg gcggacggcg
     4801 tactgatccg ctggcaggga aaaggcacct ttgtacaaag ccagaaagtt gaaaacgccc
     4861 tgcttactgt cagtggtttt accgattttg gcgtctcaca aggcaaggcg acgaaagaga
     4921 aagtgatcga acaggaacgg gtcagcgccg cgccgttttg cgaaaagctg aacatccccg
     4981 gaaacagcga agtgttccat ctctgccggg tgatgtatct cgataaagag ccgctgttta
     5041 ttgatagttc atggatcccg ctgtcgcgtt atcctgactt tgatgagatt tacgtcgaag
     5101 gaagctccac ctatcagtta tttcaggagc gttttgacac gcgagtggtc agcgacaaaa
     5161 agaccatcga tatctttgcc gccacccgcc cgcaggcaaa atggctgaaa tgcgaactgg
     5221 gcgaaccgtt gtttcgcatc agcaaaatcg cctttgatca gaatgacaaa ccggtgcacg
     5281 tctccgaact cttctgccgc gccaatcgca tcaccttaac tattgataat aaaagacatt
     5341 aaccgtaggc cggataagat gcgccagcat cgcatccggc gatgctggcg cgttgaattt
     5401 tacatcccgt acgttcccct caccctaacc ctctccccaa aggggcgagg ggaccgttca
     5461 gtacggaatt tagcttgacg gtgctatcca gcattaaata ctggcaatac tctcacgcaa
     5521 aatccgcagc accgtctctt caccgctgcg attcgggtta atgcgaatcg cacaatgttc
     5581 tgattgtgga ttcgcctggc gaaacgttcc ggaaaggcga taaaagagcg gcgggatttc
     5641 atatttcgac tctgcaccca ccgggtaagg caaggcaccg cgcttttgcg cctcttccag
     5701 cactctggcg gcaatcggct gatgaaactc gacaatcaac accttcgact gcgcattagc
     5761 aatcaccgcg cttttcactt ccggcaccgc accaccgtta agcaaagcca gcaaccgttc
     5821 agatacccct gcctgcaccg cgtgcatcac tggcgcaaac accagacaac gcaatacttc
     5881 cagcgcctgt gcgccctgga tctggctacc gccggagtaa agcgtggcgc gaatacggtt
     5941 gataacatca gcatcgccga ccactgcacc aacaccctct ggcccaaata gcttgaagca
     6001 ggaaaatgtc gagacattcg cgccgcattc acagccgatt cgcgccacct tcatcaccgc
     6061 atagttgtca tcggttaacg ctggaacacc tgccgcgcgc aacgttgcca gcacatctgc
     6121 cagcacgtag ctgtcctgcg gctgctggcg cgtatgctgc accagcgccg catccggttg
     6181 ttgctcgtcg acgacctgct tcagtgccga caggtcattg aaatcaacag taataagcgt
     6241 cagccccatc tgctcaacaa taacccgtgt cgtcgggtaa acaggcgcgt catgcaccag
     6301 aagacgctgc cccggtttga gcaaagctgc cagcccggcg cgaatcgcgc cagtccccgc
     6361 gccctgcacc agcgccgcag cctgtgcgtg aaatgcatca gccagcacct gctccacccg
     6421 ttgggtaata cgcggttgat tcagccccgg cgttaagccc aaatcaccgc tggttagaaa
     6481 ctccgcgccg ggaaagtgac ggcaaatcgt gtccaccagc gcaaactgct tttgctgcgc
     6541 ctcaataagc gtcaggcttt gcagaggaaa cgtcttcata ggtgccttcc ttaagccgga
     6601 acgaacaggc caagccagta aagaacattc agcagaatac cggtgatcat tactgccacg
     6661 accggtgccg ccattttctg taccggacgg cccagggatt cgttgaggaa gtaaatggca
     6721 accgcgatag agaatccggt ataacccgcc atcttaattg ctgcgaaaat cgaaccgacc
     6781 agcagcgcca cttccatcag catattcatg gcgttacgga tgttatccga ctcattacgc
     6841 accgacgggt agcgtcccag ccatttgccg atagaacgaa gcagcaagac ttccgccgaa
     6901 ataaccactg cgcctaatac cgctgcaacc atcggattcg gcgagagata gcccaccgca
     6961 taaacaaagg taaagcccgc aactgcatac acacccgttg ctaaggcggt ggtggcaatc
     7021 aacggtacaa aacccagccc gcgcataaat tctgccagtg ccgcctggtt gatcagcgtt
     7081 tgcgattgtt ccggcgttac gcctgcggag tacgctttct ccagagtgaa gatcgacact
     7141 tcactgccgg cgaaaatctt catgctggca acggcggcaa tcaatgctcc cacgatggcg
     7201 atatagggta agtttttgat aatccgcgac gtgcgttctt caaacaccga aagcccgctg
     7261 gcatcaatat cattttcatc acgatgacgc aggtcgtgag ttatcgcgat ccccagcagc
     7321 atcaccatgc caataaagat ttcgatggat tcagggttaa gatgtgggaa atagcgcacg
     7381 actaccacac gggtcatcag aacaaccacg gcggcgacca gactttgctt ccagccaaac
     7441 tggtagaaaa tcgccaccag cggaaacagt gcaaaagcag aaactaccgg cgagcttaat
     7501 tccccgaggc tacctaatac atccaccggc agcgcggtca gcagctggtt tactggcaac
     7561 aggcaagtaa ggatcaacac gccccagata gcgccaagac caaacgccat caggctgttt
     7621 atcgccagta cgccgaggat atcggtagga agaaagagta accatgcgtt gagcagc
//
LOCUS       DADMHM010000186         7668 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.189, whole genome shotgun sequence.
ACCESSION   DADMHM010000186 DADMHM010000000
VERSION     DADMHM010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7668)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7668)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7668
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.189"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            629..1399
                     /locus_tag="JN125_003424"
     CDS             629..1399
                     /locus_tag="JN125_003424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418784.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HAY8873080.1"
                     /translation="MQTEQQRAVTRLCIQCGLFLLQHGAESALVDELSSRLGRALGMD
                     SVESSISSNAIVLTTIKDGQCLTSTRKNHDRGINMHVVTEVQHIVILAEHHLLDYKGV
                     EKRFSQIQPLRYPRWLVALMVGLSCACFCKLNKGGWDGAVITFFASTAAMYIRQLLAQ
                     RHLHPQINFCLTAFAATTISGLLLQLPTFSNTPTIAMAASVLLLVPGFPLINAVADMF
                     KGHINTGLARWAIASLLTLATCVGVVMALTIWGLRGWV"
     gene            1390..1863
                     /locus_tag="JN125_003425"
     CDS             1390..1863
                     /locus_tag="JN125_003425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418783.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter"
                     /protein_id="HAY8873081.1"
                     /translation="MGVIEFLFALAQDMILAAIPAVGFAMVFNVPVRALRWCALLGAI
                     GHGSRMILMTSGLNIEWSTFMASMLVGTIGIQWSRWYLAHPKVFTVAAVIPMFPGISA
                     YTAMISAVKISQLGYSEPLMITLLTNFLTASSIVGALSIGLSIPGLWLYRKRPRV"
     gene            1971..2510
                     /gene="dnaT"
                     /locus_tag="JN125_003426"
     CDS             1971..2510
                     /gene="dnaT"
                     /locus_tag="JN125_003426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein DnaT"
                     /protein_id="HAY8873082.1"
                     /translation="MSSRVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYA
                     VTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFI
                     RLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPK
                     RDVNTVSEPDSQIPPGFRG"
     gene            2513..3250
                     /gene="dnaC"
                     /locus_tag="JN125_003427"
     CDS             2513..3250
                     /gene="dnaC"
                     /locus_tag="JN125_003427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001731874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication protein DnaC"
                     /protein_id="HAY8873083.1"
                     /translation="MKNVGDLMQRLQKMMPAHIKPAFKTGEELLAWQKEQGAIRSAAL
                     ERENRAMKMQRTFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASF
                     IFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFRNSGTSEEQLLNDL
                     SNVDLLVIDEIGVQTESKYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVM
                     DRMRLGNSLWVIFNWDSYRSRVTGKEY"
     gene            3299..3793
                     /locus_tag="JN125_003428"
     CDS             3299..3793
                     /locus_tag="JN125_003428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418780.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2501 domain-containing protein"
                     /protein_id="HAY8873084.1"
                     /translation="MMKTVKHLLCCAIAASALISTGVHAASWKDALSSAASELGNQNS
                     TTQEGGWSLASLTNLLSSGNQALSADNMNNAAGILQYCAKQKLASVTDAENIKNQVLE
                     KLGLNSEEQKEDTNYLDGIQGLLKTKDGQQLNLDNIGTTPLAEKVKTKACDLVLKQGL
                     NFIS"
     gene            4047..6338
                     /gene="opgB"
                     /locus_tag="JN125_003429"
     CDS             4047..6338
                     /gene="opgB"
                     /locus_tag="JN125_003429"
                     /EC_number="2.7.8.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418779.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerol--membrane-oligosaccharide
                     glycerophosphotransferase"
                     /protein_id="HAY8873085.1"
                     /translation="MSELLSFALFLASVLIYAWKAGRNTWWFAATLTVLGLFVVLNIT
                     LFASDYFTGDGINDAVLYTLTNSLTGAGVSKYILPGIGIVLGLTAVFGALGWILRHRR
                     HHPHHFGYSLLALLLALGSVDASPAFRQITELVKSQSRDGDPDFAAYYKEPSKTIPDP
                     KLNLVYIYGESLERTYFDNEAFPDLTPELGALKNEGLDFSHTQQLPGTDYTIAGMVAS
                     QCGIPLFAPFEGNASASVSSFFPQNICLGDILKNSGYQNYFVQGANLRFAGKDVFLKS
                     HGFDHLYGSEELKSVVADPHYRNDWGFYDDTVLDEAWKKFEELSRSGQRFSLFTLTVD
                     THHPDGFISRTCNRKKYDFDGKPNQSFSAVSCSQENIAAFINKIKASPWFKDTVIVVS
                     SDHLAMNNTAWKYLNKQDRNNLFFVIRGDKPQQETLAVKRNTMDNGATVLDILGGDNY
                     LGLGRSSLSGQSMSEIFLNIKEKTLAWKPDIIRLWKFPKEMKEFTIDQQKNMIAFSGS
                     HFRLPLLLRVSDKRVEPLPESEYSAPLRFQLADFAPRDNFVWVDRCYKMAQLWAPELA
                     LSTDWCVSQGQLGGQQIVQHVDKTTWQGKTAFKDTVIDMARYKGNVDTLKIVDNDIRY
                     KADSFIFNVAGAPEEVKQFSGISRPESWGRWSNAQLGDEVKIEYKHPLPKKFDLVITA
                     KAYGNNASRPIPVRVGNEEQTLVLGNEVTTTTLHFDNPTDADTLVIVPPEPVSTNEGN
                     ILGHSPRKLGIGMVEIKVVEREG"
     gene            complement(6477..7499)
                     /locus_tag="JN125_003430"
     CDS             complement(6477..7499)
                     /locus_tag="JN125_003430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418778.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding alcohol dehydrogenase family
                     protein"
                     /protein_id="HAY8873086.1"
                     /translation="MSTMNVLICQQPKELVWKQREIPIPGDNEALIKIKSVGICGTDI
                     HAWGGNQPFFSYPRVLGHEICGEIVRLGKNIADLKNGQQVAVIPYVACQQCPACKSGR
                     TNCCEKISVIGVHQDGGFSEYLSVPVANILPADGIDPQAAALIEPFAISAHAVRRAAI
                     APGEQVLVVGAGPIGLGAAAIAKADGAQVVVADTSPARREHVATRLELPLLDPSAEDF
                     DAQLQAQFGGSLAQKVIDATGNQHAMNNTVNLIRHGGTVVFVGLFKGELQFSDPEFHK
                     KETTMMGSRNATPEDFAKVGRLMAEGKITADMMLTHRYPFATLAETYERDVINNRELI
                     KGVITF"
BASE COUNT         1969 a         1969 c         1856 g         1874 t
ORIGIN      
        1 ctggcaacat atttcctcca catccactgt ctaaaaatca tgatggttta ttcaggatat
       61 tcattcctta aatgtttcca gcaaattaat agattaagcg aataaattat ccttagcatt
      121 cactttcata tcagcatact cctgctgcac aacaactcca ctgcatgtgt cagaaggtta
      181 gcatcaaatg ataacctggt gaaatagcct ggagacattt aaaatatcta cattaagttg
      241 ttaggaatac ttaatgaaaa acagaaatca cattcattta atttataatt aaatgatatc
      301 ccttcccgca gaatgaaaaa tcacacaacc aatatttatt caatgaaatc tgatggtttt
      361 aacttgttaa cattaaaaaa cgtgcccggt tatctattat cctgattcgt aaaggccaaa
      421 caataaattc attatagtga taatattcat gtgatagttt gtttgcggcg agagataatt
      481 cgctttttat caccgagctt gtcccgataa ccaggattaa tcagcgcaat tttgatctta
      541 acctaccgca aaacaaccgt gcttcatgat acaaatggat tctcattatc tgaacaatac
      601 gcagcacgtc tatgacaaag ggcgagttat gcaaactgag caacagcgag ccgtaacacg
      661 gctttgtatc cagtgtggat tatttctttt gcaacatggt gcggaaagcg cgttggttga
      721 tgagctttcc tcacgactgg gtcgggcgtt ggggatggac agcgtcgaaa gttctatctc
      781 ttcgaacgcc atagtgctga caaccattaa agatgggcaa tgcctgacat cgacacgtaa
      841 aaatcacgat cgcggcatta atatgcatgt ggtgactgaa gtccagcaca ttgtgattct
      901 ggcggagcac catctgctgg attacaaagg cgtagagaaa cgatttagcc aaattcagcc
      961 attacgttac ccaagatggc tggtagcctt aatggttggc ctttcttgcg cctgtttctg
     1021 caaactcaat aaaggtggct gggatggtgc cgtcatcacc ttctttgcca gtacggccgc
     1081 gatgtatatc cgccagctgc tggcacaacg tcatcttcat ccgcagatca acttttgcct
     1141 caccgctttc gccgccacca ccatttccgg attgcttttg caacttccca ctttcagcaa
     1201 tacacccact atcgcgatgg ccgccagcgt tctgctgctg gtgccggggt ttccgttgat
     1261 taatgccgtc gccgatatgt ttaaaggcca catcaatacc ggactggcac gctgggcgat
     1321 cgccagtctg ctgacactgg ctacctgcgt cggcgtggtg atggcactga cgatttgggg
     1381 gctacgcgga tgggtgtgat cgagtttctg tttgcattgg cgcaggatat gatcctcgcc
     1441 gccattccag cggtcggctt tgcgatggtg ttcaacgttc ccgttcgggc attacgctgg
     1501 tgtgcgctgc ttggcgcgat tggtcatggt tcacgaatga tcttaatgac cagcgggctg
     1561 aatattgagt ggtcaacctt tatggcctcc atgctggtcg gcaccattgg tattcaatgg
     1621 tcgcgctggt atctggcgca tccgaaagtg tttaccgtgg cggctgttat ccctatgttc
     1681 ccgggcatat cggcttatac cgcaatgatt tcggcggtaa aaatcagcca gttaggttac
     1741 agcgaaccgt tgatgattac cctgttaacc aactttctta cagcttcatc gattgttggt
     1801 gcgttatcca tcggtctttc cattcctgga ttatggttgt accgcaagcg ccctcgcgta
     1861 taaaattgcc tcgcttaaag cacacggatg agagacagcc tcctctcctc cgtgtgttac
     1921 tataaaagtt atctcccttc tcgttcatcg ttccatattt gagaaacagt atgtcttcca
     1981 gagttttgac cccggacgtc gttggtattg acgccctggt acacgatcac caaaccgttc
     2041 tggcaaaagc tgaaggcggt gtggttgccg tatttgctaa caatgccccg gcgttttatg
     2101 ccgtcacgcc tgcacgcctg gctgaactgc tggcgctgga agaaaagctg gcgcgtccgg
     2161 gaagcgatgt cgctctggac gatcaactct atcaggaacc gcaagccgct cccgttgctg
     2221 tacccatggg gaaattcgcc atgtatccgg actggcaacc cgatgccgat tttatccgcc
     2281 tggcggcgct atggggtgtg gcactaagag agccggtgac caccgaagaa ctggcctcat
     2341 tcattgccta ctggcaggcg gaaggtaaag tctttcacca tgtgcagtgg caacaaaaac
     2401 tggcgcgcag cctgcaaatc ggtcgtgcca gcaacggcgg actgccgaaa cgagatgtga
     2461 atacggtcag cgaacctgac agtcaaattc caccaggatt cagagggtaa cgatgaaaaa
     2521 cgttggcgac ctgatgcaac gcctgcaaaa aatgatgcct gcccatatca aacctgcatt
     2581 caaaacgggt gaagaactac tggcctggca gaaagaacaa ggagcgatcc gctccgccgc
     2641 tctcgaacgt gaaaatcggg cgatgaaaat gcagcgcacc tttaaccgct ccggtattcg
     2701 gccactgcat cagaactgct cctttgagaa ctatcgcgtt gagtgtgaag ggcagatgaa
     2761 tgcgttaagc aaagcgcgcc agtacgtcga agagtttgac ggcaacatcg ccagcttcat
     2821 cttttctggt aagccaggaa ccggcaaaaa ccatctggcg gcggcaatct gcaacgagct
     2881 gctgctacgc ggtaaatccg tattgatcat caccgtggcc gatattatgt cggcgatgaa
     2941 agataccttc aggaatagcg gtaccagtga agaacaactg cttaacgatc tgagcaacgt
     3001 tgatctgctg gtgatcgatg agatcggcgt gcagaccgaa tcgaaatacg aaaaagtgat
     3061 catcaaccag atcgtcgatc gccgctcttc ttccaaacgc ccaaccggga tgctgaccaa
     3121 cagtaatatg gaagagatga ccaagttgct gggcgaacgc gtgatggacc gtatgcgcct
     3181 gggtaacagt ttgtgggtga tcttcaactg ggatagctac cgtagccggg taacaggtaa
     3241 agagtattaa tccccgtttc tggcggtata ctgcgacaca attccacctt gagtaatgat
     3301 gatgaaaact gttaaacatc ttctgtgctg tgccattgcc gccagcgcat taatttccac
     3361 cggggtgcat gctgcgtcct ggaaagatgc gctctccagc gccgccagcg aacttggcaa
     3421 ccaaaacagc acgacacagg aaggcggttg gtcgctcgcg tcattaacta acttgcttag
     3481 cagcgggaac caggccttaa gcgcagataa catgaacaac gccgcaggca ttctgcaata
     3541 ctgcgcgaag caaaagctgg cgtcggtaac cgatgccgaa aacatcaaga accaggtgct
     3601 ggaaaagctg ggcctgaaca gtgaagagca aaaagaagac accaactatc tggatggcat
     3661 tcagggtttg ctgaaaacca aagatggtca gcaactcaat ctggataaca tcggaacgac
     3721 tccgctggca gaaaaggtga aaaccaaagc ctgcgatctg gtgttaaagc aggggctgaa
     3781 cttcatttcc tgaaccgcga aacgccgcgt tttagctgtt acccggctga cgcggctctc
     3841 tcctgccctt ttccctgctt ctggacgatt ttccccctgt tacacgggaa gcgaccgcga
     3901 tcaaaaaagt ctgtttataa actaattcct aacaacatcg catttttttg acactagaat
     3961 tgcagcaata tggcgacgcc attacattgt tcttctcaaa aagcttaaac gttggctaaa
     4021 cggcccggtt tagtgaggat cgcccgttgt cagaactact ctctttcgcc ctttttctcg
     4081 cctctgtgct gatttacgca tggaaagcgg gacgtaacac ctggtggttt gcagccacat
     4141 taacggtgct ggggctattt gtcgttttaa atatcaccct gtttgccagc gactatttta
     4201 ctggcgatgg tattaacgac gcggttctct ataccttaac caacagcctg accggtgctg
     4261 gcgtcagcaa atacatcctg ccgggtatcg gcattgtgct ggggctgaca gcggtgttcg
     4321 gtgcgctggg ctggatcctg cgccatcgtc gccatcatcc gcaccatttt ggttacagcc
     4381 tgctggcgct cttactggcg ctgggttcgg tggacgccag cccggcattt cgtcagataa
     4441 cggaactggt gaaatcccag tcacgcgatg gcgacccgga ctttgcggct tattataaag
     4501 agccgtcgaa aactatccct gacccgaaac tcaacctggt ttatatctac ggcgaaagtc
     4561 tcgagcggac ctattttgat aacgaagctt tcccggatct cacgcctgaa ctgggcgcgt
     4621 tgaaaaatga aggcctggat ttcagccaca cgcagcagct gccaggaacg gattacacga
     4681 ttgcgggcat ggtggcttct cagtgcggca taccgctgtt tgcccccttt gaaggcaacg
     4741 cctccgcctc tgtctccagc ttcttcccgc agaacatctg tctgggcgat atcctgaaaa
     4801 actcgggtta tcagaactat ttcgtgcagg gcgcgaatct gcgttttgcc ggtaaagatg
     4861 tgttcctgaa gtcgcatggc ttcgaccact tatacggctc agaagagctg aaaagcgtgg
     4921 tggccgaccc gcactatcgc aacgactggg gattctacga cgataccgtt ctcgatgaag
     4981 cgtggaaaaa gtttgaagag ctttcccgct caggtcagcg attctcactg tttaccctga
     5041 cagtcgatac ccatcacccg gatggtttta tctcgcgtac ctgtaaccgc aaaaaatatg
     5101 attttgacgg taagccaaac cagtcattca gcgcggtaag ttgcagccag gagaatatcg
     5161 cggcgtttat caacaaaatc aaagcgtcac cgtggtttaa agataccgtc atcgtcgtct
     5221 cttctgacca tttagcgatg aacaacacgg cgtggaaata cctcaataag caggatcgca
     5281 ataacctgtt ttttgtcatt cgtggcgaca agccgcagca agagacgctg gcagtgaagc
     5341 gtaacacgat ggataacggc gcgacggtgc tggacattct cggtggcgat aactatctcg
     5401 gacttggtcg tagcagttta tccgggcagt cgatgtcgga aatcttcctc aatatcaaag
     5461 agaaaacatt ggcgtggaag ccggatatca tccgcctgtg gaaattccct aaagagatga
     5521 aagagttcac catcgaccag cagaaaaaca tgattgcctt ctcgggtagc catttccgtt
     5581 tgccgctgct gttgcgggtt tcagacaaac gcgtggaacc gctgccggaa agcgaatact
     5641 cagcaccgct gcgtttccag ctggccgatt tcgctccacg cgacaatttc gtctgggttg
     5701 accgttgcta taagatggca caactctggg ctccggaact ggcactctcc accgactggt
     5761 gtgtctcgca agggcagctt ggcggtcagc aaattgttca gcatgttgac aaaacaacat
     5821 ggcagggcaa aacggcattt aaagatacgg tcatcgacat ggcgcgttat aaaggcaatg
     5881 tcgatacgct gaaaattgtt gataacgata ttcgctacaa agccgacagt ttcatcttca
     5941 acgtcgccgg tgcgccagaa gaggtgaaac agtttagtgg gatttcccgt ccagagtcgt
     6001 ggggccgctg gtccaacgcg cagctgggcg atgaagtaaa aatcgagtac aagcatccgc
     6061 tgccaaagaa atttgacctg gtgattaccg ccaaagcata cggcaataac gccagccgtc
     6121 ctattccggt acgcgtaggc aatgaagaac aaacccttgt gctgggcaat gaagtgacca
     6181 ccaccacact gcatttcgat aacccaaccg atgccgacac actggtaatt gtgccgccgg
     6241 aacctgtctc aaccaacgaa gggaatatcc tcggacactc gccgcgtaag ctcgggatcg
     6301 gcatggtgga aattaaagtg gtggaacgtg aaggataatt cctgactgat gtgtaggtcg
     6361 cataaggtgc gacctacaca ccttctgcgg cctacaaaac atcattgaga aacagaaaaa
     6421 aacagcgccc aacacttccc cggacgctgc atggcaactt taataatctc gccttatcag
     6481 aaagtaatta cacccttaat caactcacga ttgttaatca catcgcgctc gtaggtttct
     6541 gccagcgtgg cgaacggata gcgatgggtt aacatcatgt cagcagtgat ttttccttcc
     6601 gccatcagtc gaccgacttt agcaaaatct tccggcgtgg cgttgcggct acccatcatc
     6661 gtcgtttctt ttttatggaa ttccggatcg gagaactgca actcaccttt aaacaggccg
     6721 acaaatacca ccgtgccgcc gtgacgaatc aaattcacgg tgttattcat cgcatgttga
     6781 ttacctgtcg cgtcgatcac tttctgcgcc agcgaaccac caaactgcgc ctgtagctgc
     6841 gcgtcaaaat cttcggctga cgggtccagt aaaggtaatt ccagacgcgt tgccacatgt
     6901 tcacggcgcg ccggactggt atccgccacc accacctgtg cgccatcggc tttagcgatt
     6961 gccgccgcgc ccagaccgat tggccccgcc ccgaccacca gcacctgctc gccgggagca
     7021 atggctgcgc gacgcaccgc atgagcgcta atagcgaaag gttcaatcaa tgctgccgcc
     7081 tgcgggtcaa taccgtctgc gggcaaaatg ttcgccaccg gcacgctcaa atactcacta
     7141 aaaccgccat cctgatgcac gccaatgact gaaatttttt cacagcaatt ggtacgcccg
     7201 cttttacacg ccgggcattg ctgacaggca acataaggga tcacagcaac ttgctgacca
     7261 tttttaagat cagcaatatt tttacccagc ctaacaatct ccccacatat ttcatggcct
     7321 aaaacacgtg gataactaaa aaatggttga tttccacccc aggcatgaat atcggtaccg
     7381 caaatcccga cagacttaat ttttattaat gcttcattgt cacccggaat aggtatctcg
     7441 cgttgtttcc agactaattc tttcggctgc tggcaaatta aaacattcat cgtagacatg
     7501 attcggctct ccattttttg ttgccttaga tatcaatgaa aatgaaaaat ggcagcggaa
     7561 cggaaaatct gttttgtgaa aacacacgca taaaaatgtt ttaaatcggg ttttaatgga
     7621 ctcacaagga ggaaaatatg agtcgttcac aaaatttacg ccacaatg
//
LOCUS       DADMHM010000187         7627 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.190, whole genome shotgun sequence.
ACCESSION   DADMHM010000187 DADMHM010000000
VERSION     DADMHM010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7627)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7627)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7627
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.190"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..181)
                     /locus_tag="JN125_003431"
     CDS             complement(<1..181)
                     /locus_tag="JN125_003431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416165.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1289 domain-containing protein"
                     /protein_id="HAY8873087.1"
                     /translation="MAEQLEFFPVQSPCRGICQSDERGFCRGCFRSRDERFNWNKMSD
                     GEKQEVLRLCRQRLMR"
     gene            284..883
                     /locus_tag="JN125_003432"
     CDS             284..883
                     /locus_tag="JN125_003432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416166.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HAY8873088.1"
                     /translation="MNKHTEHDTREHLLATGEQLCLQRGFTGMGLSELLKTAEVPKGS
                     FYHYFRSKEAFGVAMLERHYAAYHQRLTELLQSGEGNYRDRILAYYQQTLNQFCQHGT
                     ISGCLTVKLSAEVCDLSEDMRSAMDKGARGVIALLSQALENGRENHCLTFCGEPLQQA
                     QVLYALWLGANLQAKISRSFEPLENALAHVKNIIATPAV"
     gene            920..2017
                     /gene="nemA"
                     /locus_tag="JN125_003433"
     CDS             920..2017
                     /gene="nemA"
                     /locus_tag="JN125_003433"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-ethylmaleimide reductase"
                     /protein_id="HAY8873089.1"
                     /translation="MSSEKLYSPLKVGAITAANRIFMAPLTRLRSIEPGDIPTPLMAE
                     YYRQRASAGLIISEATQISAQAKGYAGAPGIHSPEQIAAWKKITAGVHAENGHMAVQL
                     WHTGRISHASLQPGGQAPVAPSALSAGTRTSLRDENSQAIRVETSMPRALELEEIPGI
                     VNDFRQAIANAREAGFDLVELLSAHGYLLHQFLSPSSNHRTDQYGGSVENRARLVLEV
                     VDAGIEEWGADRIGIRISPIGTFQNTDNGPNEEADTLYLIEQLGKRGIAYLHMSEPDW
                     SGGEPYTDAFREKVRARFHGPIICAGAYTVEKAETLIGKGLIDAVAFGRDWIANPDLV
                     ARLQRKAELNPQRAESFYGGGAEGYTDYPTL"
     gene            2098..2505
                     /gene="gloA"
                     /locus_tag="JN125_003434"
     CDS             2098..2505
                     /gene="gloA"
                     /locus_tag="JN125_003434"
                     /EC_number="4.4.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008500591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactoylglutathione lyase"
                     /protein_id="HAY8873090.1"
                     /translation="MRLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFV
                     GYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGP
                     VKGGTTVIAFMEDPDGYKIELIEEKDAGRGLGN"
     gene            2608..3255
                     /gene="rnt"
                     /locus_tag="JN125_003435"
     CDS             2608..3255
                     /gene="rnt"
                     /locus_tag="JN125_003435"
                     /EC_number="3.1.13.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease T"
                     /protein_id="HAY8873091.1"
                     /translation="MSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITL
                     KMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYEALHEIFKV
                     VRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG
                     QTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLGGWPLPAAEEV"
     gene            3348..7627
                     /locus_tag="JN125_003436"
                     /pseudo
     CDS             3348..7627
                     /locus_tag="JN125_003436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416170.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
BASE COUNT         1730 a         2072 c         2097 g         1728 t
ORIGIN      
        1 tgcgcattaa tcgctgccga caaaggcgca gcacctcttg tttttctcca tcgctcattt
       61 tattccagtt aaaacgctca tcccgactac gaaaacagcc gcgacaaaac ccgcgttcgt
      121 cagactggca aattccccgg cacgggctct ggacgggaaa gaactctaat tgctccgcca
      181 cttcgccctc ctcagataag attattacca ttattgaagc tgttaatgtc caaagtagca
      241 actttgctcg cactagaccg actggtctgc tacactccaa cgcatgaaca aacacaccga
      301 acatgatact cgcgaacatc tcctggcgac gggcgagcaa ctttgcctgc aacgtggatt
      361 caccgggatg gggctaagcg aattactaaa aaccgctgaa gtgccgaaag ggtccttcta
      421 tcactacttt cgctctaaag aagcgtttgg cgttgccatg cttgagcgtc attacgccgc
      481 atatcaccag cgactgactg agttgctgca atccggcgaa ggtaactacc gcgaccgcat
      541 actggcttat taccagcaaa cactgaacca gttttgccaa catggaacca tcagtggttg
      601 cctgacagta aaactctctg ccgaagtgtg cgatctgtca gaagatatgc gcagcgcgat
      661 ggataaaggt gctcgcggcg tgatcgccct gctctctcag gcgctggaaa atggccgtga
      721 gaaccattgt ttaacctttt gtggcgaacc gctacaacag gcacaagtgc tttacgcact
      781 atggctgggt gcgaatctgc aggccaaaat ttcgcgcagt ttcgagccac tggaaaacgc
      841 gctggcccat gtaaaaaaca ttattgcgac gcctgccgtt tagcaggcat tttttatcac
      901 cagacgaccg ggagccttta tgtcatctga aaaactgtat tccccactga aagtgggcgc
      961 gatcacggcg gcaaaccgta tttttatggc accgctgacg cgtctgcgca gtattgaacc
     1021 gggtgacatt cctaccccgt tgatggcgga atactatcgc caacgtgcca gtgccggttt
     1081 gattattagt gaagccacgc aaatttctgc ccaggcaaaa ggatatgcag gtgcgcctgg
     1141 catccatagt ccggagcaaa ttgccgcatg gaaaaaaatc accgctggcg ttcatgctga
     1201 aaatggtcat atggccgtgc agctgtggca caccggacgc atttctcacg ccagcctgca
     1261 acctggcggt caggcaccgg tagcgccttc agcacttagc gcgggaacac gtacttctct
     1321 gcgcgatgaa aatagtcagg cgatccgtgt tgaaacatcc atgccgcgtg cgcttgaact
     1381 agaagagatt ccaggtatcg tcaatgattt ccgtcaggcc attgctaacg cgcgtgaagc
     1441 cggttttgat ctggtagagc tcctctctgc tcacggttat ttgctgcatc agttcctttc
     1501 tccttcttca aaccatcgta ccgatcagta cggcggcagc gtggaaaatc gcgcacgtct
     1561 ggtactggaa gtggtcgatg ccgggattga agaatggggt gccgatcgca ttggcattcg
     1621 catttcgcca atcggtactt tccagaacac ggataacggc ccgaatgaag aagccgatac
     1681 actgtatctg attgaacaac tgggtaaacg cggcattgct tatctgcata tgtcagaacc
     1741 agattggtcg gggggtgaac cgtatactga tgcgttccgc gaaaaagtac gcgcccgttt
     1801 ccacggtccg attatctgcg caggtgcata cacagtagaa aaagctgaaa cgctgatcgg
     1861 caaagggtta attgatgcgg tggcatttgg tcgtgactgg attgcgaacc cggatctggt
     1921 cgcccgcttg cagcgcaaag ctgagcttaa cccacagcgt gccgaaagtt tctacggtgg
     1981 cggcgcggaa ggctataccg attacccgac gttgtaatcc aacattgcga gcggcgtaaa
     2041 gccgccgcta tactaaaaca acattttgaa tctgttagcc attttgagga taaaaagatg
     2101 cgtcttcttc ataccatgct gcgcgttggc gatttgcaac gctccatcga tttttatacc
     2161 aaagtgctgg gcatgaaact gctgcgtacc agcgaaaacc cggaatacaa atactcactg
     2221 gcgtttgttg gctacggccc ggaaaccgaa gaagcggtga ttgaactgac ctacaactgg
     2281 ggcgtggata aatacgaact cggcactgct tatggtcaca tcgcgcttag cgtagataac
     2341 gccgctgaag cgtgcgaaaa aatccgtcaa aacgggggta acgtgacccg tgaagcgggt
     2401 ccggtaaaag gcggtactac ggttatcgcg tttatggaag atccggacgg ttacaaaatt
     2461 gagttaatcg aagagaaaga cgccggtcgc ggtctgggca actaatctcc tgccgggcgt
     2521 gaactcatcg cgcccgcatc tttactgcat cgacaagtaa tatttgtcat aatgcgcgct
     2581 gcaatttatc cgtattaaga gaatcagatg tccgataacg ctcaacttac cggtctgtgc
     2641 gaccgttttc gtggttttta tcctgttgtg atcgatgttg aaacagccgg atttaacgcc
     2701 aaaaccgatg cgctgcttga gattgccgcc atcaccctga aaatggatga acaaggctgg
     2761 ctgatgccgg acaccacatt acatttccac gtcgaaccat ttgtcggcgc aaatttgcaa
     2821 ccagaagccc tcgccttcaa cggcattgac ccgaacgatc ccgatcgcgg cgcggtcagc
     2881 gaatacgagg cgctgcacga aatttttaaa gttgtacgta aaggtattaa agcgagcggc
     2941 tgtaaccgcg ccattatggt ggcgcacaat gccaattttg atcacagctt tatgatggcc
     3001 gccgcagaac gcgcctcact taaacgtaac ccgttccacc ctttcgccac ttttgacact
     3061 gctgcactgg ccgggctggc actcggacaa accgtattgt caaaggcttg ccagaccgct
     3121 ggcatggact tcgacagcac ccaggcgcac tccgcgctgt acgacaccga acgcactgct
     3181 gtgctgtttt gtgaaatcgt caaccgctgg aaacgtctgg gaggctggcc gctacctgcc
     3241 gccgaagagg tgtaatcgag tcgatgcctg atgacatgca atgattcagg catctatagt
     3301 gaggctattc cacgcatcct gcatgatatt cacggggaat agcgttaatg gcagataatc
     3361 cagacccttc atcgctcctg ccggacgtgt tttcaccggc gacccgcgac tggtttcttc
     3421 gcgcctttaa acagccgacc gctgtccagt cgcaaacctg gcatgtggcg gcgcgaagcg
     3481 aacatgcgct ggtgattgca ccgaccggct ccgggaaaac gctggcagca tttctctacg
     3541 ccctcgatcg gctcttccgc gaaggcggcg aagatacccg cgaggcgcat aagcgtaaaa
     3601 cctcacgcat cctctatatt tcaccgataa aagctctggg caccgacgtt cagcgcaact
     3661 tgcagctccc gttgaagggt attgccgatg aacggcggcg gcgcggcgaa acggtaatta
     3721 ttgatgaagt ccacgcggta gcgggcagta aacgtggtgc gcatctggcg ttaaatctgg
     3781 agcggctcga tgcgctgctc cacacctcag cacagcgaat tggcctttct gccactgtgc
     3841 gctcagccag cgatgtggca gcctttcttg gtggcgatcg cccggttacg gtagtcaacc
     3901 cgcccgcaat gcgccatccg cagatacgaa ttgtcgtacc ggtcgccaat atggatgatg
     3961 tctcatcggt cgccagcagc accggcgaag acagccatgc cggccgggaa ggctccatct
     4021 ggccatatat tgaaacgggt atccttgatg aagtgttgcg ccatcgctcg accattgtct
     4081 ttactaattc acgtgggctg gcggaaaaac tgacggcacg attaaatgag ctttacgccg
     4141 cacgcttaca gcgttccccg tctatcgccg ttgatgcggc ccatttcgag tcgacctccg
     4201 gcgcaacctc taaccgtgta caaagtagcg acgtttttat tgcccgctca caccacggct
     4261 ccgtctctaa agaacaacga gcaatcaccg agcaggcgct gaaatcgggt gagttacgct
     4321 gcgtggtcgc aacctccagt ctcgaactgg ggattgatat gggcgcagtg gatctggtga
     4381 ttcaggtggc aacgccgctt tctgttgcca gtgggttaca acgcattggt cgcgccggac
     4441 atcaggttgg cggtgtatct aaagggctgt ttttccctcg tacccggcgt gacttagtcg
     4501 attccgcagt cattgtagag tgtatgttcg caggcaggct ggaaaacctg acaccccgca
     4561 taatccactc gacgtccttg cgcagcaaac cgttgccgcc gcggcgatgg aggcattaca
     4621 ggtagacgaa tggtactccc gcgtacgccg tgccgcaccg tggaaagatc tgccaagacg
     4681 tgtttttgac gccacgctgg atatgctttc cgggcgctat ccctctggcg atttttctgc
     4741 ttttcgcccc aaactggtct ggaacaggga gaccgggata ttgaccgccc gacctggcgc
     4801 tcaattgttg gcggttacca gcggcggcac cattccggat cgtggcatgt atagcgtgtt
     4861 attacccgaa ggtgaagaaa aggccggttc gcggcgggtg ggtgaactgg atgaggagat
     4921 ggtatatgag tcgcgggtga acgacattat cactctcgac gctacctcat ggcggatcca
     4981 gcaaatcacc cgcgatcagg tgattgtgac tcctgctccg ggtcgttctg cccggctccc
     5041 cttctggcgt ggtgaaggta acggacgtcc ggctgaatta ggcgagatga tcggcgattt
     5101 tcttcattta ctggcggatg gcgcgttctt ttccgggact attcccccgt ggctggcaga
     5161 agaaaatacg aacgccaata ttcaggggtt gattgacgag caacgcaacg cgacgggcat
     5221 cgttccgggg agtcgccatc tggtcctcga acggtgccgt gatgaaattg gcgactggcg
     5281 tattattttg cactctccct atggaagacg ggtgcatgaa ccctgggcgc tggcgattgc
     5341 cgggcgaata catgccctat ggggcgctga cgcgtctgtg gtcgccagtg atgacggcat
     5401 tgttgcgcgc attcctgaca ctgatggtaa attgcccgac gccgcgattt ttttgtttga
     5461 accagaaaag ttgctgcaaa ttgtccgcga ggcggtaggc agctcggcac ttttcgccgc
     5521 ccgttttcgc gaatgcgccg cgcgggcatt attaatgccg gggcgcactc cgggccatcg
     5581 caccccgctt tggcaacaac ggctgcgcgc cagtcagttg ctggaaatcg ctcagggata
     5641 tccagatttt ccggtcattc tcgaaatcct acgcgaatgt ctgcaagatg tttatgatct
     5701 tcccgcactg gaacgtttga tgcgtcgcct gaacggtggc gaaattcaaa tatccgatgt
     5761 aacgaccact acgccctcgc ctttcgccac aagtttattg ttcggctatg tcgcggaatt
     5821 tatgtaccag agcgacgccc cgctggcaga gcgccgggca tccgtactgt cgctggacag
     5881 cgagttactg cgcaatctac tcggacaggt cgatccgggg gaattactcg acccgcaggt
     5941 cattcgccag gtggaagaag agttgcaacg actggctcct ggcagaagag cgaaaggtga
     6001 agaaggattg ttcgacctgc tgcgcgaact ggggccaatg accgttgaag acctggcgca
     6061 acggcataca ggcagcagtg aagaggttgc gtcgtatctg gaaaatcttc ttgcagtaaa
     6121 acgaatcttc ccagcgatga ttagcggaca ggagcgtctt gcctgtatgg atgatgccgc
     6181 caggctgcgt gatgccctcg gcgtacgact accagagtca ttgccagaga tttatttaca
     6241 tagagtcagt tacccgcttc gcgacctctt tctgcgctat ctccgggctc atgctctggt
     6301 cacggctgaa caactggctc atgagtttag tctcggtatt gccattgtcg aagagcagct
     6361 tcagcaactg cgtgaacagg gtctggtgat gaatctgcaa caagacatct gggtgagcga
     6421 tgaagtattt cgtcgtctgc gtttgcgctc gctgcaagcc gccagagaag cgacgcgtcc
     6481 cgttgcagcc acgacctatg cgcgattgct gctggaacgt cagggcgtat tacccgccac
     6541 cgatggtagc ccggcgctct ttgcctcaac atcgccaggc gtttatgagg gcgtagatgg
     6601 cgtgatgcgg gtgatcgaac agcttgccgg agtcggttta cccgcctcac tctgggaaag
     6661 ccagatcctg cctgcccgcg tacgcgacta ttcgtcagaa atgctcgatg aattactggc
     6721 aaccggtgcg gttatctggt cggggcaaaa aaaactgggt gaagatgacg gcctggtggc
     6781 actgcatcta caggaatatg ctgcagaatc gttcactccc gccgaagcgg atcaggcgaa
     6841 tcgttcggcg ctgcaacaag cgatagtcgc tgttctggct gacggaggag cctggtttgc
     6901 acaacaaatc agccaacgga tacgcgacaa aatcggcgaa tcggttgatc tctctgccct
     6961 gcaagaggcg ttatgggcgc tggtctggca aggcgtcatc accagcgaca tttgggcacc
     7021 gttacgcgcc ctcacccgca gcagttccaa cgcacgcacc tcaactcgcc gcagtcaccg
     7081 ggctcgtcgt ggacgtcctg tctatgcgca acccgtctcg ccgctggtat cttacaacac
     7141 accaaatctg gctggacgct ggtcgttatt gcaggtggag ccactaaacg ataccgaaag
     7201 gatgctggcg ctggcggaaa atatgctcga ccgctacggc atcatcagtc gtcaggcggt
     7261 gatagccgaa aatatccctg gcgggtttcc atcgatgcaa acgctttgtc gaagtatgga
     7321 agactccggg cgaattatgc gaggtcgttt tgtagaaggt ctgggtggcg cgcaattcgc
     7381 tgaacgtctg actattgacc gatggcgcga tctggcgaca caagccacgc aaacgcgcca
     7441 ctatacacca gtggcgctct ctgccaacga tccggctaat gtgtggggaa atcttctgcc
     7501 ctggcctgca catccggcaa cgctggttcc aacgcgtcgg gcgggtgcgc tggtggtcgt
     7561 ttctagcggc aaattgttac tctatctggc gcaaggtggc aaaaaaatgc tggtctggca
     7621 ggaaaaa
//
LOCUS       DADMHM010000188         7551 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.191, whole genome shotgun sequence.
ACCESSION   DADMHM010000188 DADMHM010000000
VERSION     DADMHM010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7551)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7551)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7551
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.191"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(1..246)
                     /locus_tag="JN125_003437"
                     /pseudo
     CDS             complement(1..246)
                     /locus_tag="JN125_003437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            complement(586..1140)
                     /locus_tag="JN125_003438"
                     /pseudo
     CDS             complement(586..1140)
                     /locus_tag="JN125_003438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3-like element IS3H family transposase"
     gene            1283..1405
                     /locus_tag="JN125_003439"
                     /pseudo
     CDS             1283..1405
                     /locus_tag="JN125_003439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
     gene            complement(1667..2233)
                     /locus_tag="JN125_003440"
     CDS             complement(1667..2233)
                     /locus_tag="JN125_003440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858157.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873092.1"
                     /translation="MLGTSFNNFGISLSHKRYFSGKVDEIIRCTMGKRIVKISSTKIN
                     TSILSSVSEQIGENITDWKNDEKKVYVSRVVNQCIDKFCAEHSRKIGDNLRKQIFKQV
                     EKDYHISLDINAAQSSINHLVSGSSYFKKKMDELCEGMNRSVKNDTTSNVANLISDQF
                     FEKNVQYIDLKKLRGNMSDYITNLESPF"
     gene            complement(2515..2829)
                     /locus_tag="JN125_003441"
     CDS             complement(2515..2829)
                     /locus_tag="JN125_003441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873093.1"
                     /translation="MLQRQRGKVGFAQLPVDFVAIEPDSVQGVGKRANLTNRCFIIRI
                     NDSFKKRQGFIEFISNSGSGHTVTVYTKRRFQRGVFMNSLNTNVVKPVMYRLRSSADA
                     RP"
     gene            complement(2907..3017)
                     /locus_tag="JN125_003442"
                     /pseudo
     CDS             complement(2907..3017)
                     /locus_tag="JN125_003442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            complement(3341..4018)
                     /gene="ospD1"
                     /locus_tag="JN125_003443"
     CDS             complement(3341..4018)
                     /gene="ospD1"
                     /locus_tag="JN125_003443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspD1"
                     /protein_id="HAY8873094.1"
                     /translation="MSINNYGLHPANNKNMHLIIGSNTANENKGMKRNIINVTNTAIS
                     HAINEEKSGGGYSGVSFRKLAKIQSISIPTKNNKEYNRHNLFSLIWHGNADAARKYGE
                     SLLAAEIPKEEKLEVLAARNNAGESALFIALQEGHSAAIQAYGDFIKTFDLSPKETIK
                     LLDVRDNEGLPGLFLAAGKGNIEAMMAYINICHHSGIKLTEIADRLNNNEQDMFNIIS
                     DKIQELF"
     gene            complement(4388..4525)
                     /locus_tag="JN125_003444"
                     /pseudo
     CDS             complement(4388..4525)
                     /locus_tag="JN125_003444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011787828.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
     gene            complement(4607..4905)
                     /locus_tag="JN125_003445"
                     /pseudo
     CDS             complement(4607..4905)
                     /locus_tag="JN125_003445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000343747.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(5494..5653)
                     /locus_tag="JN125_003446"
                     /pseudo
     CDS             complement(5494..5653)
                     /locus_tag="JN125_003446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            complement(5657..6811)
                     /locus_tag="JN125_003447"
                     /pseudo
     CDS             complement(5657..6811)
                     /locus_tag="JN125_003447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
     gene            complement(6831..7178)
                     /gene="tnpB"
                     /locus_tag="JN125_003448"
     CDS             complement(6831..7178)
                     /gene="tnpB"
                     /locus_tag="JN125_003448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000624623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HAY8873095.1"
                     /translation="MISFPAGSRIWLVAGITDMRNGFNGLASKVQNVLKDDPFSGHLF
                     IFRGRRGDQIKVLWADSDGLCLFTRRLERGRFVWPVTRDGKVHLTPAQLSMLLEGIDW
                     KHPKRTERAGIRI"
     gene            complement(7178..>7551)
                     /locus_tag="JN125_003449"
     CDS             complement(7178..>7551)
                     /locus_tag="JN125_003449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001743492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY8873096.1"
                     /translation="RPNFPYEFKIALVEQSLQPGACVAQIARENGINDNLLFNWHHQY
                     RKGGLLPSGKNMPALLPVTLTPEPDNKIPAPAQEPEQINTPSDSLCCELVLPAGTLRL
                     KGKLTPALLQILIREIKGSSH"
BASE COUNT         1954 a         1752 c         1636 g         2209 t
ORIGIN      
        1 tcattaccat gacggtattg atgccgattt tcagcgtacg ggcagtatcg cgaactccgg
       61 caccgttgaa gccatttcag tgatttggtt tttaactccc ggtttacggg cctcgtaaca
      121 gtaagtgagc tgaaacaccc ggtgacagtc acggcaacgg aatcgatcat gtccttttgg
      181 gttctgcccg tgacggtaaa cctgaacgga ctggcaacgg gggcaatgaa agttaactgt
      241 gaccatgaaa gaaccttaaa agcgggtatt ataaccccta attcaactaa ttggaggcat
      301 tgtcattttt aatctatgga tacacttaaa aatcctctca ccttacgtta aaaaccttct
      361 catgtttaga gttttttatt atgtttatca taatgatatg acgatctgag tttttaaaat
      421 caagaagaaa agataagttt tttaaatgca cagtgcctgt ggataacttt gcgtaaatcc
      481 ggaggacaga tcactctgaa gcaagacaac agcatctgaa aacaatatgc tcacgtttca
      541 accacagggc gtaagtgatc ctacccacgt aatatggaca caggcctaag cgaggttctg
      601 gttttcaaat tgttccggac tgaggccgcc acaccaactg tgccgtcgcc agcgattgta
      661 atcacattcg atataattaa acactgttgc ccgcattatt tcccggctga taaagtgttc
      721 tccgtggaga cattccactt tcagcgaatg aaagaagctt tccacgcagg cattatcgta
      781 gcagcagccc tttgcgctca tactgccacg cagattatgc cacttcagca gcgcctgata
      841 atctgctgaa cagtactgac ttcctcggtc cgagtgaacg ataacgttcc ggggtctctt
      901 acgccgccac agcgccatct gcagggcatc gcaggccagt tgcgccgtca ggcgtggtga
      961 catggaccag ccaataacgg cacgtgacca caggtcaatg accacagcca gatacagcca
     1021 gccttcatct gtacgtaagt acgtgatgtc tcccgcccac ttctggttcg gaccactggc
     1081 gtaaaaatcc tgctccagca gattttctga cacaggcagg ccatgtgcgc ggtaactgac
     1141 cgtattgctg ggtaagatca atttgctcac tggtatttac tacgtgcatc gaatgagtga
     1201 tcaagagccg tatgacgcga gagtgtcacg tacggttccg tgagcagccg gagagtgaaa
     1261 ctctctccgg ctgactcgac tcgcaggttc cgacagcggt gacgaacatg cagcggtgtt
     1321 gttctcgctg atcggcacat gccgtctgaa caatgtggag ccagaaaaat ggctgcgtta
     1381 cgttattgaa catatccagg actgaccggc aaaccgggta cgcgatctgt tgccttggaa
     1441 agttgatctg acttctcagt aaatatcaat atgattctga cgagccgctt acctttgagc
     1501 agagaaaggg gagagggatc ccacatccat gagctaggaa aatacaaaaa ctggctatac
     1561 aacaattcaa tatattagga cttacttgcg aggagaaata tagcaccgct caggcaattc
     1621 ctgggtattt acttttctta gtttctttac tcgggatgtt ctgtcatcag aaaggcgatt
     1681 ctaaatttgt aatatagtca ctcatattcc cacgtaattt ctttagatca atatattgca
     1741 catttttctc aaaaaactga tcggaaataa gatttgcaac attgcttgtt gtatcatttt
     1801 taacgcttct attcatccct tcacaaagtt cgtccatttt ctttttgaaa taactgcttc
     1861 ctgatacaag atgatttatg gaactttgtg cagcattgat gtctagagaa atgtgataat
     1921 ctttctcaac ctgtttaaat atctgtttac ggagattatc gccgattttt cggctgtgtt
     1981 ctgcacaaaa cttatcaata cattggttta ccacccggga tacgtagact tttttttcat
     2041 catttttcca atctgtaata ttttcaccga tttgttctga aacagagctc aaaatactag
     2101 tatttatttt ggttgatgat atttttacta tccttttccc cattgtacag cggataatct
     2161 catcaacctt tcctgaaaaa tatcttttgt gagataaact gattccaaaa ttattaaaag
     2221 atgttccaag cattataatc actttgtcat gtaaaatagt aacattgtca ttattttagc
     2281 tgattcaaac aattctgtaa atgctttgag ttctttactc ccttggctca atgatggacc
     2341 gtctggaatc ccagagacta aactctctga gaaagagagt atgaaaaaac ttggggcagt
     2401 ccctaaatga agggaccaac agcggtaaaa taaccggcat cattcataat gatgccctgt
     2461 tagttgtagt tatgaagatt tacgtcatta aaattgctgt tcgtagtgtc agtcctatgg
     2521 tctggcatca gctgaggatc gtagccgata catcactggc ttcacgacat tcgtgttgag
     2581 gctattcatg aaaactccac gctgaaaacg ccgttttgta taaacggtca cggtatgccc
     2641 ggagccactg ttgctgatga attcgataaa accttggcgt ttcttgaagc tatcgttaat
     2701 gcggataatg aaacaacgat tggtgagatt cgctcttttg ccgacaccct ggacgctgtc
     2761 cggttcaatc gcaacaaaat caaccggcag ctgagcaaac ccaaccttgc ctctctgacg
     2821 ctggagcatg aagtgattta gctgggacgt agccactgac agcttctata aaagtatgat
     2881 cctacccacg taatatgaac acaggcttaa gtgaggttct ggttttcaaa ttgttcagga
     2941 ctgagacctc cacaccaact gtgccgtcgt cagcgattgt aatcgcactt gatataatta
     3001 aacactgtat atttcatttg tggagtctcc agtctgaggg ggctttatgc attccgtatt
     3061 gggcactatg atgccagaaa tctgcaaggc tccacacctt cctgtatttc ccttcctcta
     3121 tcacagtgca ctttacttaa tagggtggga tgtgttcatt acatttattg tgttttttat
     3181 gattgttttt gcgtccagtg tcgttcgtca tgggaaactg gttctatggg tagtatcgct
     3241 cagtctagtt aactgtttgt ttctttttag aaattaagca gatcacacaa ttcggggaga
     3301 gatccttcta agtgcaattc tttgcagcta tttagcacac ttaaaacaac tcttgtattt
     3361 tgtcagaaat aatattaaac atgtcttgtt cattattgtt aagtctgtct gctatttctg
     3421 taagttttat cccactatga tggcatatat ttatatatgc catcatagcc tcgatattcc
     3481 ctttccctgc ggccagaaat aatcctggta acccctcatt atctcttaca tccaatagtt
     3541 taatcgtttc ttttggtgat aaatcaaaag ttttaataaa atctccataa gcttgaatcg
     3601 cagcggaatg accttcttga agagctatga acaaagcaga ttccccagca ttatttcgtg
     3661 ctgcaagaac ttctagtttt tcctctttgg gtatttcggc tgccaacagc gattcaccgt
     3721 atttacgcgc tgcatcggca tttccatgcc aaatcaatga aaacaaatta tggcggttat
     3781 actccttatt attctttgtc ggaatggata tgctctgtat tttggccaat tttctgaaag
     3841 aaacaccact atatcccccc cctgattttt cttcattgat ggcgtgggat atagcggtat
     3901 ttgtcacgtt aatgatatta cgtttcattc ctttattttc attagcagta ttgctgccta
     3961 ttattaggtg catatttttg ttgtttgctg gatgtaatcc atagttattt attgacattt
     4021 ttgttcatcc tttttgctaa aaaaaacaat aacctatttt tgtaatgtaa tagatattag
     4081 tctattgcta atctaaaaaa accattgcca cattgaatgg ctatattcac caataaattc
     4141 tttcgatttc gtatattgac atatcgtaga tatatcttat ccctaagatt caataatcga
     4201 gtccgtttac cattctgtgc aagcgccttc actcagaagt gaccgtcaag gcgatcacca
     4261 aacttgataa taaagcagct cattgccata cgccagtcct taggggcgtt gtccatttct
     4321 gtgatgctgc ctagatttaa ctgccagctc cggcttatct acatctaaat atgtgagcct
     4381 aataccgcta cactttggcc agactatgtt tttctccggg aagtgggcta accgtctcca
     4441 taaagtgacg aacttttttc aacagtggcc atattgaacg gcactgatga ttacgggtta
     4501 ttgtctcatg aagagccggc cacatcactg acagcagtga cttcaggcct tcagcaccag
     4561 acagcctgaa ccagttaatc catcgcccga cagatttagt aatctagggc tggtttttct
     4621 tcagctgttg cggttcgaaa gtgccattac gatcacgcag agtacggatt tccagaggtt
     4681 catctccagt agtgataatc ttcgttaagc aaccattgcg ggaattgctg ccagatctaa
     4741 gctgattttt ctcgcaccca agatgatgag tcatattagc attgagtacg gtttcatttt
     4801 cagcatccaa tcaaactgac tgagatcttc aggatttttg agacttttgg ctagttcatt
     4861 agctaaagcc cgcaacttat tagatgtcaa ctgtttttca ttcataaatt caccttcatt
     4921 tgatatcaaa ttaaatagtt caacatcaga gaattataca aacttatgta caggctccta
     4981 tgatcttcga atcctgaaga ttatagtgaa aataagtttt cacgttgaaa tcccacatag
     5041 ttagtatatg ataaataatc atggatgacc tgattaacct cttggggtag tgcttttata
     5101 gaagaataaa tattctacta atttaataca tcacctaaaa tagtattgtt ttttatggtt
     5161 ggttgaaggt cgtggtgatg atgttagtcc ttttgagaat attccagtgc cagatcttac
     5221 ttataataaa ggggcttggc agtttggata aactattgtt cttattccac taatacaaac
     5281 tttttgtaaa gtatattaaa tatacttcat ttcatactga aatccccgga agtattcaat
     5341 caaacaatta caccataaaa ggaagagggg gccctaatta agttgtcaag catgtttatg
     5401 atacctgcag ggtataaatt ttctggctgc aagcagacac atataaaacg tctttattga
     5461 tcctacccac ataatatgga cacagtcgta agtgaggctc tggttttcaa attgttccgg
     5521 actgagacca ccacaccaac ggtgccgtcg ccagcgattg taatcgcact cgatataact
     5581 aaacactgtt gcccgcacta tttcccgatg gataatagtg ttctccgtgg agacattcca
     5641 ttttcagcga atgaattttc atctgttgct gtatccagtc atacaatgac tgcatcagtg
     5701 gcgcggctct ggcttttctt gccgccagac gctgttctgc tgaacatccc cggacttctg
     5761 cctcgatggc atacagttca ccgatacgca gcagggcttc cgttattctg ccggattcgt
     5821 acaacgcccg gtaaccaccg taagcatcgg cctgaagcac tccgctgtaa ccggccagat
     5881 gattctgtgg atggatacct ttccggtccg gtgagtacgc gaaccagacc gccggaggca
     5941 tttccgaacc ggcgttacgg tcatcacgaa cgtagaccca cagccgggca gtccttgttt
     6001 taccgctgcc cggctcctgg accggaacgg ggatatcatc ggcatggact ttaccgggca
     6061 tcagcacata ctggcgcagg atgtcataca gcggttccag cagttcagca acagcacctg
     6121 tccagcgccc cagtgtggca cggctcagct ccacgccctg acgacggtat atttctgact
     6181 ggcggtataa cggcagatag tctgcatatt ttccagcgac aacatgggcc agaagccccg
     6241 ctccggcata actgcgtgca atgggttttg aaggcaccgg tgcttgcacg atatggtcac
     6301 accggcaaca ggccagtttc ggacgttgtg tttcgataac cttaaaggcg ctgctgataa
     6361 gctccagctg ctctgacaca tcacatccca gagaactgag ttcgccacca caggccgggc
     6421 agcattcctc ttccggacgg atgacccggg tttcacgggg aagtgaggca ggtaacggtt
     6481 tacgggctga agactggcgc aggggagatg gcagtaccgg gtcatattgc tcacccagcg
     6541 tttccgccat ttcttcctga agtgcgctga ttcgctcctg tgcttccagt atctgccgtt
     6601 cggtttttgc gcgaagtttt tctgagcttt taccgaactg catgcgctgc agtttcgcaa
     6661 ccagcgcctt cagccggttg atttcggaag cataagccgc cacccgctgt gagagcaggc
     6721 ggttgtattt cgccatctgg cggatggtgt cctgttgcgt ctgcaacagt gcccgcaggc
     6781 gggcattctc atgagcaagt gaggtgtcca tatcctcact ttacaacggg ttatatgcgg
     6841 atgccagcgc gttccgttcg tttcgggtgt ttccagtcga tgccctcaag aagcatggat
     6901 aactgggccg gagtaaggtg caccttgccg tcacgggtga ccggccagac gaagcggccc
     6961 cgctccaggc gtctggtaaa gaggcacagt ccgtcactgt cagcccacaa cacttttatc
     7021 tggtcacccc ggcgtccgcg gaagatgaac agatgcccgg agaacgggtc atccttcagg
     7081 acgttctgaa cttttgaggc cagaccgtta aagccatttc gcatatcggt gatacctgca
     7141 accagccaga tacgcgaacc tgcagggaaa gatatcatca gtggctgctc ccttttattt
     7201 cgcggataag tatctgtaat aacgccggcg tcagtttacc tttaagcctg agagttccgg
     7261 ccggcagaac cagctcacag cacagactgt cggacggtgt atttatctgc tctggttcct
     7321 gtgccggagc cgggatttta ttatccggct ccggcgttaa cgtcacggga agcagtgcag
     7381 gcatattttt tccggaaggc agcaggccac ctttccggta ttgatggtgc cagttgaaga
     7441 gcaggttatc gttgattccg ttttcacggg cgatctgcgc cacacaggct ccgggctgca
     7501 gtgactgctc cactaaggcg attttaaatt cataaggaaa attaggccgc c
//
LOCUS       DADMHM010000189         7496 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.192, whole genome shotgun sequence.
ACCESSION   DADMHM010000189 DADMHM010000000
VERSION     DADMHM010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7496)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7496)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7496
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.192"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..101)
                     /locus_tag="JN125_003450"
     CDS             complement(<1..101)
                     /locus_tag="JN125_003450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxypyruvate isomerase"
                     /protein_id="HAY8873097.1"
                     /translation="MLRFSANLSMLFGEYDFLARFEKAAQCGFRGVE"
     gene            complement(114..1895)
                     /gene="gcl"
                     /locus_tag="JN125_003451"
     CDS             complement(114..1895)
                     /gene="gcl"
                     /locus_tag="JN125_003451"
                     /EC_number="4.1.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate carboligase"
                     /protein_id="HAY8873098.1"
                     /translation="MAKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIR
                     HILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITG
                     QAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLV
                     DLPFDVQVAEIEFDPDMYEPLPVYKPAASRMQIEKAVEMLIQAERPVIVAGGGVINAD
                     AAALLQQFAELTSVPVIPTLMGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFG
                     IGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQ
                     EMQKAGRLPCRKEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTT
                     IGLSQIAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQ
                     FLIEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYCVQLAFENINSSEVNGYG
                     VDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVEVILERVTNISMGSE
                     LDNVMEFEDIADNAVDAPTETCFMHYE"
     gene            complement(1985..2800)
                     /gene="allR"
                     /locus_tag="JN125_003452"
     CDS             complement(1985..2800)
                     /gene="allR"
                     /locus_tag="JN125_003452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional repressor AllR"
                     /protein_id="HAY8873099.1"
                     /translation="MTEVRRRGRPGQAEPVAQKGAQALERGIAILQYLEKSGGSSSVS
                     DISLNLDLPLSTTFRLLKVLQAADFVYQESQLGWWHIGLGVFNVGAAYIHNRDVLSVA
                     GPFMRRLMLLSGETVNVAIRNGNEAVLIGQLECKSMVRMCAPLGSRLPLHASGAGKAL
                     LYPLAEEELMSIILQTGLQQFTPTTLVDMPTLLKDLEQARELGYTVDKEEHVVGLNCI
                     ASAIYDDVGSVVAAISISGPSSRLTEDRFVSQGELVRDTARDISTALGLKAHP"
     gene            complement(2878..3360)
                     /gene="allA"
                     /locus_tag="JN125_003453"
     CDS             complement(2878..3360)
                     /gene="allA"
                     /locus_tag="JN125_003453"
                     /EC_number="4.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ureidoglycolate lyase"
                     /protein_id="HAY8873100.1"
                     /translation="MKLQVLPLSQEAFSAYGDVIETQQRDFFHINNGLVERYHDLALV
                     EILEQDRTLISINRAQPANLPLTIHELERHPLGTQAFIPMKGEVFVVVVALGDDKPDL
                     STLRAFITNGEQGVNYHRNVWHHPLFAWQRVTDFLTIDRGGSDNCDVESIPEQELCFA
                     "
     gene            3590..4516
                     /gene="allS"
                     /locus_tag="JN125_003454"
     CDS             3590..4516
                     /gene="allS"
                     /locus_tag="JN125_003454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional activator AllS"
                     /protein_id="HAY8873101.1"
                     /translation="MFDPETLRTFIAVAETGSFSKAAERLCKTTATISYRIKLLEENT
                     GVALFFRTTRSVTLTAAGEHLLSQARDWLSWLESMPSELQQVNDGVERQVNIVINNLL
                     YNPQAVAQLLAWLNERYPFTQFHISRQIYMGVWDSLLYEGFSLAIGVTGTEALANTFS
                     LDPLGSVQWRFVMAADHPLANVEEPLTEAQLRRFPAVNIEDSARTLTKRVAWRLPGQK
                     EIIVPDMETKIAAHLAGVGIGFLPKSLCQSMIDNQQLVSRVIPTMRPPSPLSLAWRKF
                     GSGKAVEDIVTLFTQRRPEISGFLEIFGNPRS"
     gene            4585..5679
                     /gene="mnmH"
                     /locus_tag="JN125_003455"
     CDS             4585..5679
                     /gene="mnmH"
                     /locus_tag="JN125_003455"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HAY8873102.1"
                     /translation="MQERHTEQDYRALLIADTPIIDVRAPIEFEQGAMPAAINLPLMN
                     NDERAAVGTCYKQQGSDAALALGHKLVAGEIRQQRIDAWRAACLQNPQGILCCARGGQ
                     RSHIVQSWLHAAGIDYPLVEGGYKALRQTAIQATIELAQKPIVLIGGCTGSGKTLLVQ
                     QQPNGVDLEGLARHRGSAFGRTLQPQLSQASFENLLAAEMLKTDARQDLRLWVLEDES
                     RMIGSNHLPECLRERMTQAAIAVVEDPFEIRLERLNEEYFLRMHHDFTHAYGDEQGWQ
                     EYCEYLHHGLSAIKRRLGLQRYNELAAQLDTALTTQLTTGSTDGHLAWLVPLLKEYYD
                     PMYRYQLEKKAEKVVFRGEWAEVAEWVKAR"
     gene            5795..6160
                     /locus_tag="JN125_003456"
                     /pseudo
     CDS             5795..6160
                     /locus_tag="JN125_003456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014543172.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
     gene            complement(6926..7172)
                     /locus_tag="JN125_003457"
                     /pseudo
     CDS             complement(6926..7172)
                     /locus_tag="JN125_003457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308588.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(7153..>7496)
                     /locus_tag="JN125_003458"
     CDS             complement(7153..>7496)
                     /locus_tag="JN125_003458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308587.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873103.1"
                     /translation="MKRLNLGGTDQFFHCMAFCRVSKLNDAGVSRSAKGLGYEKEIRD
                     YGLNLFGMYGRKVKLSHSEMIEDNKKDLAVNDHGLTCPSTTDCSDRCSDYINPEHKKT
                     IKALQDAGYLK"
BASE COUNT         1951 a         1912 c         1754 g         1879 t
ORIGIN      
        1 aattcaacgc cgcgaaaacc acactgcgca gctttctcaa aacgggcgag aaaatcatat
       61 tcaccaaata acatcgataa attagcagag aaacgtaaca taatttacct cccttattca
      121 tagtgcatga agcaggtttc agtcggtgcg tccactgcgt tatcggcgat atcttcaaat
      181 tccatgacgt tatccagttc gctgcccatc gaaatattgg tcacacgctc gagaataact
      241 tccacgacta ccggtacccg atattgcgcc attaaggctt tcgcctgttc aaaggctggc
      301 gcaatatctt ccggtttgaa gacgcgaatc gctttacaac ctaaaccttc cgctactttt
      361 acgtggtcga cgccgtaacc gttcacttcg ctggagttga tattctcgaa agcgagttgc
      421 acgcagtagt ccatgtcaaa ggcgcgttgt gactgacgaa tcaggccgag ataggcgtta
      481 ttcaccagca catggatgta cggaatgttg aactgcgcgc caacggctaa ctcttcaatc
      541 aggaactgga agtcaaagtc gccagaaatc gccaccacat tgcgtttcgg atcagcggca
      601 caaaccccta gcgcagccgg aatcgtccag cctaacggac cagcctgacc acagttgatc
      661 cagtggcggt ctttaaagac atgcagcatt tgtgccgcag cgatttgtga cagaccgatg
      721 gtggtgacat aacaaacatc gcgaccaaag gctttgttca tctcttcata cacgcgctgc
      781 ggtttcaccg gcacgttgtc gaagtgggtt ttgcgcagca aagtgcgttt gcgctgctgg
      841 cagtcggcga cccattcttt acgacacggc agacgacccg ctttttgcat ctcctgcgcc
      901 acttcaacca gcagtgtcag cgccgcttta gcatcagaga caatgccgag atccggacac
      961 agcacgcgac caatttgcgt cggctcaata tcgatatgaa cgattttgcg cccttcggtg
     1021 tatttctcta ccgaaccggt atgacggtta gcaaaacggt taccgatacc aaacaccatg
     1081 tcggacgcca gcaacgttgc gttaccgtaa cgatgcgcgg tttgcaggcc gaccatcccg
     1141 gccatcagtt catgatcgtc cgggatacag ccccagccca tcagcgttgg gatcaccgga
     1201 acgctggtca gttcagcaaa ctgttgtaac agtgcagctg cgtcagcatt gattaccccg
     1261 cccccggcaa caatcaccgg acgttcggcc tggattaaca tttctacagc tttttcgatc
     1321 tgcatacggc tggcagcagg tttgtagacc ggcagcggtt cgtacatgtc aggatcaaac
     1381 tcgatttccg caacctgaac gtcgaacggt aaatccacca gtaccggacc cggacgacca
     1441 gaacgcatca ggtgaaatgc ctgttgcagc acgcgaggca ccagcgccgc ttcacgaact
     1501 gtaaccgcca ttttgctgac cggtttagca attgcttcaa tatctacggc ctgaaaatct
     1561 tctttatgca gacgggcgcg cggtgcctgg ccggtaatgc acagaatagg aatggaatca
     1621 gcagaagcgg aatagagcgc ggtgatcatg tccgtgcccg caggaccgga agtccccaga
     1681 catacgccga tattccctgc cgttgcgcgg gtataacctt ccgccatgtg cgaagcacct
     1741 tccacatgac gcgccagaat gtgacgaata ccgccgtgct tacgcatcgc tgagtagaac
     1801 ggattgattg cagctcccgg aacaccgaag gcggtggtga taccttcttt ctccagcaca
     1861 tacattgccg cgtcaacggc tctcattttt gccattttat tcccacccct atttattgga
     1921 aaatttttcc aactttcaaa ttttgtcaaa aaaacccgct ccgcagagcg ggatgcgaca
     1981 gacattatgg atgtgctttc agtcccaacg ccgtgctgat atcgcgggcg gtgtctctga
     2041 ccagctcacc ctgactgaca aaacgatctt ctgtcagtct tgatgaaggc ccggagatgg
     2101 agatagcggc aacaacgcta ccgacatcat cgtaaattgc tgaagctatg caattcagac
     2161 ctacaacatg ctcttcttta tctacggtat agcccagttc acgcgcttgt tccaggtcct
     2221 tcagcaaggt gggcatatcc acaagcgtag ttggcgtaaa ctgctgcaaa ccggtttgca
     2281 gaatgatgct catcaactcc tcttccgcca gcggataaag cagcgctttg cccgcaccgg
     2341 aagcatgcag cggcagacga ctgcccagtg gcgcacacat cctgaccatt gatttacact
     2401 ctaactgacc aattaatact gcttcattgc cgttacggat cgcgacattg accgtttcgc
     2461 cggaaagtaa catcaggcgg cgcataaacg gcccggcgac ggagaggaca tcgcggttat
     2521 ggatgtacgc cgcaccgacg ttaaagacac ctaatcctat atgccaccag cctaattgac
     2581 tttcctgata gacaaaatcc gctgcttgta aaaccttcag caagcgaaag gtcgtggaga
     2641 gcggcaaatc cagattgaga gaaatatcgc taaccgacga acttccccca cttttttcca
     2701 gatattgcag aatcgcaatt ccccgctcta acgcctgtgc gcccttctgt gccacaggct
     2761 ccgcctgtcc tggcctgccg cgccgtctaa cttccgtcat acctacgtta actccgacct
     2821 acaagtgagc ataaacaatg aacaattagt ttatcttatg caagtcggtt gcaggcgtca
     2881 cgcaaaacag agttcctgtt caggaatact ttcaacatca cagttgtcac tgccgccgcg
     2941 atcgatggtc agaaaatcgg tgacgcgctg ccaggcgaaa agtgggtgat gccagacgtt
     3001 acgatggtaa ttcactccct gttcgccgtt ggtgataaac gcccgcagcg ttgacaggtc
     3061 tggtttgtcg tcgcctaacg ccacgaccac cacaaacact tcacctttca tcgggataaa
     3121 ggcctgagtg cccagcggat gacgttcgag ttcgtgaatg gtcagcggca gattcgccgg
     3181 ttgcgcgcgg ttaatgctaa taagcgtacg gtcttgctca agaatctcaa ccagcgccaa
     3241 atcgtggtaa cgctccacca ggccattgtt aatatggaaa aaatcccgtt gctgagtttc
     3301 gattacgtcg ccataagcac taaaggcttc ctgacttaac ggtaatacct gaagtttcat
     3361 ctttttgtcc ttgtaacata attccgttca accaccgccg accggtcagc ttggtttcaa
     3421 taacaggcaa tctaaaacct taagagaaca acatcaatac aaaagttgga atatttttcc
     3481 aaaaccagat ttagtccaca aattgaacag ggttatcatg taaaaatact gataaatcag
     3541 aggataagaa aatcacgcaa cttgcggatt taaaagggga tacctgaaga tgttcgatcc
     3601 agaaaccttg cggactttca ttgcggttgc tgaaacagga agtttttcaa aagcggcaga
     3661 acgattatgt aaaaccacgg cgacgatcag ttatcgcatt aaacttctgg aagagaatac
     3721 cggagtagcg ctgtttttcc gtacgactcg tagcgtaacg ttgacagcgg ctggcgagca
     3781 tctactttcc caggccagag actggctgag ctggctggaa agtatgccca gcgagctgca
     3841 acaggtgaat gatggcgtgg aacgccaggt gaatattgtc atcaacaacc tgctctataa
     3901 cccccaggcc gtcgcccagt tgctagcgtg gctgaatgaa cgttacccct ttacccagtt
     3961 tcacatctcc cgacaaatct atatgggcgt ctgggactcg ctattgtacg aaggtttttc
     4021 gctggctatc ggcgtcacgg gaactgaggc gctggcaaat acctttagtc ttgatccctt
     4081 aggatcggtg caatggcgat ttgtcatggc ggcggatcat ccgctggcga acgttgaaga
     4141 gccgctaaca gaagcgcagt tgcgtcgctt tccggcggtc aatattgaag acagcgcccg
     4201 caccttaacc aaacgcgtcg cctggcgatt gccagggcaa aaagagatta ttgttcctga
     4261 tatggaaacg aaaatcgccg cccatctggc gggcgttggc attggttttt tgccaaaatc
     4321 gctttgccag tcaatgatcg ataatcaaca actggtcagc cgggtaatcc caacgatgcg
     4381 ccctccttcg ccattgagtc tggcatggcg caaatttggc agcggcaaag cggtagaaga
     4441 tattgtgacc ttgtttaccc agcgcaggcc ggaaatcagc ggatttttag aaattttcgg
     4501 caacccacgc agttaaaaat caagtttcct tgcgcgttgg cgcgtaaaat agcgcgcaag
     4561 ctgatttgag gttcactttt aactatgcaa gagagacaca cggaacagga ctatcgtgcc
     4621 ctgctgattg ctgatacgcc cattattgat gttcgcgccc ctatcgagtt tgagcaaggc
     4681 gcaatgcccg ccgctatcaa tctgccgtta atgaataacg atgaacgcgc cgccgttggc
     4741 acctgctata aacagcaagg gtcagacgcg gcgctggcgc tggggcataa actggtggcg
     4801 ggtgaaattc gtcagcagcg catagacgcc tggcgggcag cgtgcctgca aaatccgcaa
     4861 ggtattctct gctgtgcccg tggcggtcaa cgctcacata ttgtgcaaag ctggttgcat
     4921 gcagcgggga ttgattatcc gctggtggaa ggcggttata aggcactgcg ccagaccgcg
     4981 attcaggcga ctattgaact ggcacaaaaa ccgatagtgc tgattggcgg ttgtaccggc
     5041 agcggtaaaa cgctgttagt gcagcaacag ccgaacggtg tcgatctgga agggctggcg
     5101 cgtcatcgcg gttcggcgtt tggtcgcacg ttacaaccac aacttagcca ggcgagtttt
     5161 gaaaatctgc tggctgccga aatgctaaaa accgacgccc gtcaggattt gcgcctgtgg
     5221 gtgctggaag atgaaagccg gatgatcggt tcgaatcacc tgccggaatg tctgcgcgag
     5281 cgaatgactc aggcggcgat tgcggtggta gaagatccgt ttgagatccg tcttgaacgc
     5341 ctgaacgaag agtatttctt gcgtatgcat catgatttta cccacgcgta cggcgacgaa
     5401 cagggctggc aggaatattg cgaatacctg catcacggac tttcggctat taagcgtcgg
     5461 ctggggttac agcgctataa cgaactcgct gcccagctgg atacggcgct gacaacgcaa
     5521 ctcaccaccg gcagcaccga cggtcatctg gcctggctgg tgccgttact taaagaatat
     5581 tacgacccaa tgtatcgcta tcagcttgag aaaaaagcgg aaaaagttgt ctttcgcggt
     5641 gagtgggcgg aagtggcgga atgggttaag gcgcggtaat gagggacgta tttgtattag
     5701 tcgcgacttg atctgacaca tggccttgaa aggttgagag ttaccggttt tgatatgagt
     5761 gtcgaatcct tatccaaaac aagaggtaac tctcatgctt catactgcca atcccgtcat
     5821 caaacacaaa gccggtttgc tcaatctggc tgaagaactc agcaacgtat caaaagcctg
     5881 taaaatcatg ggcgtttcgc gtgatacgtt ttatcgttac cgcgaactgg tcgctgaagg
     5941 cggtgtggat gcgcagatta atcgtagtcg ccgcgctcct aaccttaaga accgtaccga
     6001 tgaggcaact gaacaggctg ttgttgatta cgccgtcgct ttcccgacac atggtcagca
     6061 ccgggccagc aacgagctgc gtaaacaggg gggttttatc tccgacagtg gtgtccgttc
     6121 tgtctggtta ctccataacc ttgagaatct caaaagacga tactgaacaa attttatcag
     6181 gtgacgttcc gtaaaaagtt gtatggagtt ctcgatgcag tcggcgcgac tatcagtacc
     6241 cccgctgaac cctggactat cgggccgccg tactggggca tgtcaccctg gcgtgccgct
     6301 ggttttccgc taatggttta tttcctcttt ctttcccggc aagaatttat tttaatccgg
     6361 aaggattatt tattttcaga tagggactca cattaaacac gtaacatttt aattaatgca
     6421 tggctgaata tgtattacac aatgtcagat atcgtaaaag accagtgcaa ttctatgtaa
     6481 actctctgac tgttcatttt atttgttgtt tcagggtcgg aactcaccct caataaacaa
     6541 ctgaatacga gtagatattc atcgtctgag ctatatggct ttacacaata gccgacatgt
     6601 cttttctcag tcaggaattt tacttttcct cactacgaag ttgacgactt cgatatggga
     6661 tagactctta attcaagcaa ttactctgca caagcatcag gcaatccagc tccaatattt
     6721 gttataaaat aatgcgtaac attaatttca ccaacaaaaa aaggtttaca ccatcccctt
     6781 gccctggtat cttaccatat ttacaccaca ctttttttgt atctggatca ttctttgata
     6841 cgattttcgc cacttgttcc ctggccctca ctgtcaatgt tttcttaaac ctacccccat
     6901 catcatttgt tagggaaaaa taagaaaaaa aataatcatc ttctacattt gtgtatattg
     6961 atatatccac cgctacgtgc gaaaaaaaaa tctgggagcc atgtaaaaac tccatcattt
     7021 tctggtattg ccatatagtt tatgtaatgt ttacttacaa gagattcatc tttgtataaa
     7081 taaagataag taattacgca taaaacaaca atgattataa tagcaaaaat aaatattatc
     7141 atctttgata gattacttga gatagccagc atcttgtaaa gcctttatcg tttttttatg
     7201 ctctggatta atataatcac tacatctatc tgagcaatct gttgttgatg gacatgtcaa
     7261 cccatggtca tttacagcca agtctttttt attatcttca atcatttcag aatgggatag
     7321 ctttactttt ctgccgtaca taccgaacag atttaacccg taatctctaa tctctttttc
     7381 ataacccagc cctttcgccg atcggctaac accagcgtca tttaatttag acactcgaca
     7441 aaatgccata caatggaaaa attgatcagt cccacctaaa tttaatctct tcataa
//
LOCUS       DADMHM010000190         7476 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.193, whole genome shotgun sequence.
ACCESSION   DADMHM010000190 DADMHM010000000
VERSION     DADMHM010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7476)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7476)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7476
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.193"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            196..804
                     /locus_tag="JN125_003459"
     CDS             196..804
                     /locus_tag="JN125_003459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HAY8873104.1"
                     /translation="MKLVGSYTSPFVRKLSILLLEKGITFEFINELPYNADNGVAQFN
                     PLGKVPVLVTEEGECWFDSPIIAEYIELMNVAPAMLPRDPLESLRVRKIEALADGIMD
                     AGLVSVREQARPAAQQSEDELLRQREKINRSLDVLEGYLVDGTLKTDTVNLATIAIAC
                     AVGYLNFRRVAPGWCVDRPHLVKLVENLFSRESFARTEPPKA"
     gene            902..2293
                     /gene="selA"
                     /locus_tag="JN125_003460"
     CDS             902..2293
                     /gene="selA"
                     /locus_tag="JN125_003460"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HAY8873105.1"
                     /translation="MTTETRSLYSQLPAIDRLLRDSSFLSLRDTYGHTRVVELLRQML
                     DEAREVIRDSQTLPAWCENWAQEVDARLTKEAQSALRPVINLTGTVLHTNLGRALQAE
                     AAVEAVAQAMRSPVTLEYDLDDAGRGHRDRALAQLLCRITGAEDACIVNNNAAAVLLM
                     LAATASGKEVVVSRGELVEIGGAFRIPDVMRQAGCTLHEVGTTNRTHANDYRQAVNEN
                     TALLMKVHTSNYSIQGFTKAIDEAELVALGKELDVPVVTDLGSGSLVDLSQYGLPKEP
                     MPQELIAAGVSLVSFSGDKLLGGPQAGIIVGKKEMIARLQSHPLKRALRADKMTLAAL
                     EATLRLYLHPEALSEKLPTLRLLTRSAEVIQIQAQRLQAPLAAHYGAEFAVQVMPCLS
                     QIGSGSLPVDRLPSAALTFTPHDGRGSHLESLAARWRELPVPVIGRIYDGRLWLDLRC
                     LEDEQRFLEMLLK"
     gene            2290..4134
                     /gene="selB"
                     /locus_tag="JN125_003461"
     CDS             2290..4134
                     /gene="selB"
                     /locus_tag="JN125_003461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HAY8873106.1"
                     /translation="MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAY
                     WPQPDGRVPGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLT
                     GNPMLTVALTKADRVDEARVDEVERQVKDVLREYGFAEAKLFITAATEGRGIDALREH
                     LLQLPGREHASQHSFRLAIDRPFTVKGAGLVVTGTALSGEVKVGDSLWLTGVNKPMRV
                     RALHAQNQPTETAHAGQRIALNIAGDAEKEQINRGDWLLADAPPEPFTRVIVELQTHT
                     PLTQWQPLHIHHAASHVTGRVSLLEDNLAELVFDTPLWLADNDRLVLRDISARNTLAG
                     ARVVMLNPPRRGKRKPEYLQWLASLARAQNDSEALAVHLQRGAVNLPDFAWARQLNGE
                     GMRELLQQPGYIQAGYSLLNAPVAARWQRKILDTLATYHEQHRDEPGPGRERLRRMAL
                     PMEDEALVLLLIEKMRESGDILSHHGWLHLPDHKAGFSEEQQAIWQKAEPLFGDEPWW
                     VRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQECGS
                     TCAADFRDRLGVGRKLAIQILEYFDRIGFTRRRGNDHLLRDALLFPEK"
     gene            4324..5475
                     /gene="yiaY"
                     /locus_tag="JN125_003462"
     CDS             4324..5475
                     /gene="yiaY"
                     /locus_tag="JN125_003462"
                     /EC_number="1.1.1.103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-threonine dehydrogenase"
                     /protein_id="HAY8873107.1"
                     /translation="MASSTFFIPSVNVIGADSLTDAMNMMADYGFTRTLIVTDSMLTK
                     LGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPHD
                     CAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRFCIITDEARHIK
                     MAIVDKHVTPLLSVNDSSLMIGMPKSLTAATGMDALTHAIEAYVSIAATPITDACALK
                     AVTMIAENLPLAVEDGSNAKAREAMAYAQFLAGMAFNNASLGYVHAMAYQLGGFYNLP
                     HGVCNAVLLPHVQVFNSKVAAARLRDCAAAMGVNVTGKNDAEGAEACINAIRELAKKV
                     DIPAGLRDLNVKEEDFAVLATNALKDACGFTNPIQATHEEIVAIYRAAM"
     gene            5640..7178
                     /locus_tag="JN125_003463"
     CDS             5640..7178
                     /locus_tag="JN125_003463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001551836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HAY8873108.1"
                     /translation="MTNNPPSAQIKPGEYGFPLKLKARYDNFIGGEWVAPADGEYYQN
                     LTPVTGQLLCEVASSGKRDIDLALDAAHKVKDKWAHTSVQDRAAILFKIADRMEQNLE
                     LLATAETWDNGKPIRETSAADVPLAIDHFRYFASCIRAQEGGISEVDSETVAYHFHEP
                     LGVVGQIIPWNFPLLMASWKMAPALAAGNCVVLKPARLTPLSVLLLMEIVGDLLPPGV
                     VNVVNGAGGEIGEYLATSKRIAKVAFTGSTEVGQQIMQYATQNIIPVTLELGGKSPNI
                     FFADVMDEEDAFFDKALEGFALFAFNQGEVCTCPSRALVQESIYERFMERAIRRVESI
                     RSGNPLDSVTQMGAQVSHGQLETILNYIDIGKKEGADVLTGGRRKLLEGELKDGYYLE
                     PTILFGQNNMRVFQEEIFGPVLAVTTFKTMEEALELANDTQYGLGAGVWSRNGNLAYK
                     MGRGIQAGRVWTNCYHAYPAHAAFGGYKQSGIGRETHKMMLEHYQQTKCLLVSYSDKP
                     LGLF"
BASE COUNT         1781 a         1858 c         2087 g         1750 t
ORIGIN      
        1 gctgacaggc aaaaccctac agatttataa gaaagcctga agtgagatat ccatcagagt
       61 gaaataatta ggaaaatatt tatatcacca tgataaatat gtgatttatt tggaagtaac
      121 aaaccatcaa cattttctgc cctttttccc atcaccaggc catactgata tttttcctcg
      181 cacaaaggac tcggcatgaa actcgtcggt agctacacca gcccgtttgt acgcaaactt
      241 tctattctgt tgttagaaaa gggcataact ttcgaattta ttaatgaact gccctataac
      301 gcggacaacg gcgtggcgca atttaacccg ttaggaaaag tgccggtgct ggtgaccgaa
      361 gagggcgaat gctggtttga ttcgccgatc atcgctgaat atattgagtt aatgaatgtc
      421 gctccggcga tgttgccgcg cgatccgctg gagtcgttgc gggtgcgcaa aattgaggcg
      481 ctggcggatg gcattatgga tgccgggctg gtatcggtgc gtgaacaggc gcgtccagcg
      541 gcgcagcagt ctgaagatga attgttacgc cagcgggaga aaatcaaccg cagtctggat
      601 gtgctggaag gatatctggt cgatggcaca ctcaaaaccg atacggtcaa tctggcgact
      661 atcgccattg cctgtgctgt cggatatctc aatttccgcc gcgttgcgcc aggttggtgt
      721 gtcgaccgcc cacacttagt caaactggtc gaaaacctgt ttagccgcga aagttttgct
      781 cgcaccgaac cgccaaaggc ttgatgcgcg atatgtcctc ctgacccatc tcacgttaca
      841 atccgtggtt atgttaaacg cccttctccg tgtgagaggg ccttgattag ccaggtttcc
      901 tatgacaacc gaaacgcgtt ccctctatag tcaacttccg gctattgatc gcttattgcg
      961 cgatagctcc ttcctttctt tgcgtgatac ttatggtcac acccgcgtgg tggaattgtt
     1021 gcgtcagatg ctcgacgaag cgcgagaagt gattcgtgac agccagacgc ttcctgcgtg
     1081 gtgtgaaaac tgggcgcaag aagtcgatgc ccggttgacg aaagaggcgc agagcgcgct
     1141 gcgtccggtg atcaacctga cgggaaccgt gctgcatacc aaccttggac gagctttaca
     1201 ggcggaagcc gcggtggaag ccgttgcgca ggctatgcgt tcgccagtga ccctcgagta
     1261 cgatctggac gacgctggac gcggacatcg cgatcgggcg ctggcgcaac tgctgtgccg
     1321 tattacgggg gcggaagatg cctgtatcgt caataacaat gcggcggcgg tgttattgat
     1381 gttggcggcc actgccagcg ggaaagaggt ggtagtatct cgcggcgaat tggtggagat
     1441 tggcggcgcg tttcgtattc ccgatgttat gcgtcaggca ggctgcaccc tacacgaagt
     1501 agggaccacc aaccgtacgc acgcgaatga ttatcgtcag gcggtgaatg aaaataccgc
     1561 actgttgatg aaagtacata ccagtaacta cagcattcag gggttcacca aagcgataga
     1621 tgaagcggaa ctggtggcgc tcggcaaaga gctggatgtt cccgtagtga ctgatttagg
     1681 cagtggctcg ctggtcgatc ttagccagta cggtttgccg aaagagccaa tgccgcagga
     1741 gttgattgcg gcgggcgtca gtctggtgag cttctccggc gacaagttgt taggcgggcc
     1801 gcaggcaggg attatcgttg gtaaaaaaga gatgatcgcc cgcctgcaaa gccacccgct
     1861 gaagcgtgca ttacgcgcgg ataaaatgac cctcgcggcg ctggaagcca cgttgcgtct
     1921 ttatttacac cctgaagctc tgagtgaaaa attaccgacc ctgcgcctgc ttacccgcag
     1981 cgcagaggtc attcaaatcc aggcacaacg tttacaggct ccccttgccg cacattacgg
     2041 cgcggagttt gcggtacagg ttatgccatg tctttcgcag attggcagtg gttcgctgcc
     2101 ggttgatcgc ctgccgagcg cggcattaac gtttacaccc catgatggac gcggtagcca
     2161 ccttgagtca ttagccgccc gctggcgtga attgccagtg ccggtgattg gtcgtattta
     2221 tgacggacga ttgtggctgg atttacgctg ccttgaagat gagcaacggt ttttggagat
     2281 gttgttgaaa tgattattgc gactgccgga cacgttgacc acggcaaaac aaccttattg
     2341 caggcgatta ctggcgtaaa tgctgaccgt ctgccggaag aaaaaaagcg cggcatgacc
     2401 atcgatctcg gctatgccta ctggccgcag ccggatggtc gcgtgcctgg ttttatcgac
     2461 gtacccggtc atgaaaagtt tctttccaac atgctggcgg gcgttggtgg tattgatcac
     2521 gcgctgttgg tggtggcgtg cgatgacggc gtgatggcgc agacccgtga gcatctggcg
     2581 attttgcagc tgaccggtaa cccgatgctg acagtggcgc tgaccaaggc cgatcgcgtg
     2641 gacgaagcgc gtgttgatga ggttgaacgc caggtaaagg atgtgctgcg ggaatacggt
     2701 tttgctgagg caaaactgtt tatcaccgca gcaaccgaag gtcggggaat tgatgccctg
     2761 cgcgagcatc tgcttcagtt accaggacgt gaacacgcca gccaacatag tttccgcctc
     2821 gcgatcgacc gcccatttac cgtaaaaggt gccgggctgg tcgtcaccgg tacggcgtta
     2881 agcggggaag tgaaggtagg cgattcactc tggctgactg gtgtaaataa accgatgcgt
     2941 gtacgtgcgc tgcatgcaca aaaccagcca acagaaaccg cccatgccgg gcagcgtatc
     3001 gcgcttaaca tcgcgggtga tgcggaaaaa gagcagatta accgtggcga ctggctgctt
     3061 gccgatgcgc cgccagagcc gttcacacgg gtgattgtcg agcttcaaac ccatacaccg
     3121 ctgacccagt ggcagccgct gcatattcac cacgccgcca gccacgtcac gggacgcgtt
     3181 tcactgctgg aagataacct tgctgaactg gtcttcgaca ccccgttatg gctggcagat
     3241 aacgaccgcc tggtattgcg cgatatctct gcccgcaaca cgctggccgg agcgcgcgtc
     3301 gtgatgctta acccgccgcg tcgcggtaaa cgtaaaccag agtatctgca atggctggct
     3361 tccctcgcca gggcacagaa tgatagcgaa gcgttagccg ttcacctgca acgcggcgcg
     3421 gttaatcttc ctgatttcgc ctgggcgcgc cagctcaacg gcgaagggat gcgcgaactg
     3481 ctgcaacagc ctggctatat tcaggctggt tatagcttgt tgaatgcgcc ggttgccgct
     3541 cgctggcaac ggaaaattct cgacacatta gcgacttatc atgagcaaca tcgcgatgaa
     3601 cctgggcctg ggcgcgaacg tctgcgacgt atggcgttgc caatggaaga tgaagcgcta
     3661 gtactgttgc tgattgaaaa gatgcgcgaa agcggcgaca tcctcagtca tcacggttgg
     3721 ctgcatctgc cggatcacaa agcgggcttc agcgaagagc agcaggccat ctggcaaaaa
     3781 gcagagccgc tgtttggtga cgagccgtgg tgggtgcgtg atctggcaaa agagacgggt
     3841 accgacgagc aggcaatgcg cctgacgcta cgccaggcgg cgcagcaagg aataattacc
     3901 gcgatcgtca aagatcgtta ttaccgtaac gatcggattg tcgaatttgc caatatgatc
     3961 cgcgatctcg atcaggagtg tggttcaacc tgcgcggcgg atttccgcga tcgcttaggc
     4021 gtaggccgaa agctggcaat tcagattctg gaatattttg accgcattgg ctttacgcgt
     4081 cgtcgtggaa atgatcattt attgcgcgac gcattattat ttccggaaaa ataaggaaat
     4141 gattaattaa tttttaaaat aaattaatac aaatttctta tgattttaaa aaaagcacat
     4201 tgtttaatga atacaatgtg ctttttatta gattaatttt gataattaat aataatgatc
     4261 atgttttcga atgaaaatcc tcagtaagct tcccaccctt ttttacactt tcaggagtgt
     4321 gttatggcat cttcaacttt ctttattcct tctgtgaatg tcatcggcgc tgattcattg
     4381 actgatgcaa tgaatatgat ggcagattat ggatttaccc gtaccttaat tgtcactgac
     4441 agtatgttaa cgaaattagg tatggcgggc gatgtgcaaa aagcactgga agaacgcaat
     4501 atttttagcg ttatttatga tggcacccaa cctaacccca ccacggaaaa cgtcgccgca
     4561 ggtttgaaat tacttaaaga gaataattgc gatagcgtga tctccttagg cggtggttct
     4621 ccacacgact gcgcaaaagg tattgcgctg gtggcagcca atggcggcga tattcgcgat
     4681 tacgaaggcg ttgaccgctc tgcaaaaccg cagctgccga tgatcgccat caacaccact
     4741 gcgggtacgg cctctgaaat gacccgtttc tgcatcatca ctgacgaagc gcgtcatatc
     4801 aaaatggcga ttgttgataa acatgtcact ccgctgcttt ctgtcaatga ctcctctctg
     4861 atgattggta tgccgaagtc actgaccgcc gcaacgggta tggatgcctt aacgcacgct
     4921 atcgaagcat atgtttctat tgccgccacg ccgatcactg acgcttgtgc actgaaagcc
     4981 gtgaccatga ttgccgaaaa cctgccgtta gccgttgaag atggcagtaa tgcgaaagcg
     5041 cgtgaagcaa tggcttatgc ccagttcctt gccggtatgg cgttcaataa tgcttctctg
     5101 ggttatgttc atgcgatggc gtaccagctg ggcggtttct acaacctgcc acacggtgta
     5161 tgtaacgccg ttctgctgcc ccatgttcag gtattcaaca gcaaagtcgc cgctgcacgt
     5221 ctgcgtgact gtgccgctgc aatgggcgtg aacgtgacag gtaaaaacga cgcggaaggt
     5281 gctgaagcct gcattaacgc catccgtgaa ctggcgaaga aagtggatat cccggcaggc
     5341 ctacgcgacc tgaacgtgaa agaagaagat ttcgcggttc tggcgactaa tgccctgaaa
     5401 gatgcctgtg gttttactaa cccgatccag gcaactcacg aagaaattgt ggcgatttat
     5461 cgcgcagcga tgtaatcatc atttccacaa cggctggcaa attgtcagcc gctttttcaa
     5521 ctatctctgt aacccttgcc cgtaaattcg tgatagccgt cgtaaagctg ttaccgactg
     5581 gcgaagattt cgccagtcac gtctaccctt gttatacctc acaccgcaag gagacgatca
     5641 tgaccaataa tcccccttca gcacagatta agcccggcga gtatggtttc cccctcaagt
     5701 taaaagcccg ctatgacaac tttattggcg gcgaatgggt agcccctgcc gatggtgagt
     5761 attaccagaa cctgacgccg gtgactgggc agctgctgtg cgaagtggcg tcttcgggca
     5821 aacgagacat cgatctggcg ctagatgctg cgcacaaagt gaaagataaa tgggcgcaca
     5881 cctcggtgca ggatcgcgcg gcgattctgt ttaagattgc cgatcgaatg gaacaaaacc
     5941 tcgagctgtt agcgacagct gaaacctggg ataacggcaa acccattcgc gaaaccagtg
     6001 ctgccgacgt gccgctggcg attgatcatt ttcgctattt cgcctcgtgt attcgggcgc
     6061 aggaaggtgg gatcagtgaa gttgatagcg aaaccgtggc ctatcatttc catgaaccgt
     6121 taggcgtggt ggggcagatt atcccgtgga acttcccgct gctgatggcg agctggaaaa
     6181 tggctcccgc gctggcggcg ggcaactgtg tggtgctgaa acccgcacgt cttaccccgc
     6241 tttctgtact gctgctaatg gaaattgtcg gtgatttact gccgccgggc gtggtgaacg
     6301 tggtcaatgg cgcaggtggg gaaattggcg aatatctggc gacctcgaaa cgcatcgcca
     6361 aagtggcgtt taccggctca acggaagtgg gccaacaaat tatgcaatac gcaacgcaaa
     6421 acattattcc ggtgacgctg gagttgggcg gtaagtcgcc aaatatcttc tttgctgatg
     6481 tgatggatga agaagatgcc tttttcgata aagcgctgga aggctttgca ctgtttgcct
     6541 ttaaccaggg cgaagtttgc acctgtccga gtcgtgcttt agtgcaggaa tctatctacg
     6601 aacgctttat ggaacgcgcc atccgccgtg tcgaaagcat tcgtagcggt aacccgctcg
     6661 acagcgtgac gcaaatgggc gcgcaggttt ctcacgggca actggaaacc atcctcaact
     6721 acattgatat cggtaaaaaa gagggcgctg acgtgctcac aggcgggcgg cgcaagctgc
     6781 tggaaggtga actgaaagac ggctactacc tcgaaccgac gattctgttt ggtcagaaca
     6841 atatgcgggt gttccaggag gagatttttg gcccggtgct ggcggtgacc accttcaaaa
     6901 cgatggaaga agcgctggag ctggcgaacg atacgcaata tggcctaggc gcgggcgtct
     6961 ggagccgcaa cggtaatctg gcctataaga tggggcgcgg catacaggct gggcgcgtgt
     7021 ggaccaactg ttatcacgct tacccggcac atgcggcgtt tggtggctac aaacaatcag
     7081 gtatcggtcg cgaaacccac aagatgatgc tggagcatta ccagcaaacc aagtgcctgc
     7141 tggtgagcta ctcggataaa ccgttggggc tgttctgata taagaagctg gtcgcattgg
     7201 gtattcattg cctgatgtga cgcttacgcg tcttatcatg cctacgggaa cctgaccgta
     7261 ggccggataa ggcgtacacg ccgcatccgg cataaacaaa gcgcacgttg ttacaattta
     7321 cgttttaaac ctacgtgcgc aataatccag actacgccaa cagaagtgcg tttctggggc
     7381 gtgttttgtc aggagtttaa tctcgcgttt cgatggtgag caggcgaact aggccgtaaa
     7441 tcaccattgg tgatccgagg ccaatcagca ataaac
//
LOCUS       DADMHM010000191         7446 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.194, whole genome shotgun sequence.
ACCESSION   DADMHM010000191 DADMHM010000000
VERSION     DADMHM010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7446)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7446)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7446
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.194"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(196..558)
                     /locus_tag="JN125_003464"
     CDS             complement(196..558)
                     /locus_tag="JN125_003464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YibL family ribosome-associated protein"
                     /protein_id="HAY8873109.1"
                     /translation="MKEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKAT
                     LEAEIARLREVHSQKLSKEAQKLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTA
                     LGREMGLQEMTGFSKTAF"
     gene            843..1052
                     /locus_tag="JN125_003465"
     CDS             843..1052
                     /locus_tag="JN125_003465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873110.1"
                     /translation="MGKLGENVPLLIDKAVDFMASSQAFREYLKKLPPRNAIPSGIPD
                     ESVPLYLQRLEYYRRLYRPKQVEGQ"
     gene            complement(1064..1651)
                     /gene="mtlR"
                     /locus_tag="JN125_003466"
     CDS             complement(1064..1651)
                     /gene="mtlR"
                     /locus_tag="JN125_003466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor MtlR"
                     /protein_id="HAY8873111.1"
                     /translation="MVDQAQDTLRPNNRLSDMQATMEQTQAFENRVLERLNAGKTVRS
                     FLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVI
                     NRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAALPPPPQFEPADSSL
                     YAMQIQRYQQAVRSTMVLSLTELISKISLKKAFQK"
     gene            complement(1651..2799)
                     /gene="mtlD"
                     /locus_tag="JN125_003467"
     CDS             complement(1651..2799)
                     /gene="mtlD"
                     /locus_tag="JN125_003467"
                     /EC_number="1.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709374.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HAY8873112.1"
                     /translation="MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNARH
                     SYQVHVVGETEQVDTVSGVNAVSSIGDDVVDLIAQVDLVTTAVGPVVLERIAPAIAKG
                     LVKRKEQGNESPLNIIACENMVRGTTQLKGHVMNALPEDAKAWVEEHVGFVDSAVDRI
                     VPPSASATNDPLEVTVETFSEWIVDKTQFKGALPNIPSMELTDNLMAFVERKLFTLNT
                     GHAITAYLGKLAGHQTIRDAILDEKIRAVVKGAMEESGAVLIKRYGFDADKHAAYIQK
                     ILGRFENPYLKDDVERVGRQPLRKLSAGDRLIKPLLGTLEYSLPHKNLIQGIAGAMHF
                     RSEDDPQAQELAALIADKGPQAALAQISGLDANSEVVSEAVTAYKAMQ"
     gene            complement(3029..4942)
                     /locus_tag="JN125_003468"
     CDS             complement(3029..4942)
                     /locus_tag="JN125_003468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICBA"
                     /protein_id="HAY8873113.1"
                     /translation="MSSDIKIKVQSFGRFLSNMVMPNIGAFIAWGIITALFIPTGWLP
                     NETLAKLVGPMITYLLPLLIGYTGGKLVGGERGGVVGAITTMGVIVGADMPMFLGSMI
                     AGPLGGWCIKHFDRWVDGKIKSGFEMLVNNFSAGIIGMILAILAFLGIGPIVEALSKM
                     LAAGVNFMVVHDMLPLASIFVEPAKILFLNNAINHGIFSPLGIQQSHELGKSIFFLIE
                     ANPGPGMGVLLAYMFFGRGSAKQSAGGAAIIHFLGGIHEIYFPYVLMNPRLILAVILG
                     GMTGVFTLTILGGGLVSPASPGSILAVLAMTPKGAYFANIAGVCAAMAVSFVVSAILL
                     KTSKVKEEDDIEAATRHMQDMKAESKGTSPLSAGDVTNDLSHVRKIIVACDAGMGSSA
                     MGAGVLRKKIQDAGLSQISVTNSAINNLPPDVDLVITHRDLTERAMRQVPQAQHISLT
                     NFLDSGLYTSLTERLVAAQRHTENEVKVKDSLKDSFDDSSANLFKLGAENIFLGRKAA
                     TKEEAIRFAGEQLVKGGYVEPEYVQAMLDREKLTPTYLGESIAVPHGTVEAKDRVLKT
                     GVVFCQYPEGVRFGEEEDDIARLVIGIAARNNEHIQVITSLTNALDDESVIERLAHTT
                     SVDEVLELLAGRK"
     gene            5479..5841
                     /locus_tag="JN125_003469"
     CDS             5479..5841
                     /locus_tag="JN125_003469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3302 domain-containing protein"
                     /protein_id="HAY8873114.1"
                     /translation="MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAI
                     HTAGWVSLFTLHVIWPFLWIWATLYQPERGWGMQSHVASQEKATDPEIASLSDRISRL
                     EHQLAAEKKTDYSTFPEI"
     gene            5844..6980
                     /locus_tag="JN125_003470"
     CDS             5844..6980
                     /locus_tag="JN125_003470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HAY8873115.1"
                     /translation="MDLLIVLTYVALAWAVFKIFRIPVNQWTLATAALGGVFLVSGLI
                     LLMNYNHPYTFTAQKAVIAIPITPQVTGIVTEVTDKNNQLIQKGEVLFKLDPVRYQAR
                     VDRLQADLMTATHNIKTLRAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFS
                     ERDIDDARQNFLAQDALVKGSVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLE
                     QTVIRAPSNGYVTQVLIRPGTYAAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGD
                     DAEVVFNALPRQVFHGKLTSILPVVPGGSYQAQGGLQSLTVVPGTDGVLGTIELDPND
                     DIDALLDGIYAQVAVYSDHFSHVSVMRKVLLRMTSWMHYLYLDH"
BASE COUNT         1814 a         1860 c         1849 g         1923 t
ORIGIN      
        1 tcttctatat atttttattg tttataggtg gctatttcgg taaaaatgca ttttcagaat
       61 atcaaccagc ggtaaatcga cgtaaaggga gtgaattgtt tggtaattag gcgagtagac
      121 aggagagtcc ccgcattgac cagctaaggc aagccagatg cgggttgata tgatcgaacc
      181 agtcgtctga ggcgcttaaa acgcagtctt agagaatcca gtcatctcct gcaggcccat
      241 ttcacggccc agcgcggtca ttgggtgcac aaccaccagt ccgcgaacac ttttcttcag
      301 cttgcccata tcagcctgct cttttttggt aattgcgcgc tgaaacggca tcttcatcag
      361 cttctgtgct tctttactca gtttttggct atgaacctca cgcaggcgag caatttctgc
      421 ttccagcgtg gctttctctt tttccagctc ggcatatttg tctgcggctt caaccagcga
      481 cagatcggcc tgctggtggc ggatggcgtc caggcgatcg ctgagacgtt tgatttcgtt
      541 tttttcgact tctttcatgt gatggcttct gataaagata aatttatagc ccctagtatg
      601 cgcgaccagg tgctttgttc acaactgatg acattgtaat agttctgcaa cgtaatcatt
      661 aacatgctca aaaactacgc aattcgttga ttaattaaga aatctataga aaaaagataa
      721 taaacagcag cggatgatta ttgaggattc agcacgtttt ccttaatgtc atctttaccg
      781 ggaacctaaa ctaaaattgg tggccgcgca ttcccggcgc ggggtaatac ggagatatca
      841 tcatgggaaa attaggtgaa aacgttccgc ttcttatcga taaagccgta gatttcatgg
      901 catcaagcca ggcgttccgg gagtatctga aaaaacttcc tccccgtaac gcgattccgt
      961 ccggaatacc cgatgaaagc gtgccgttat atctacaacg tctggagtat tatcgtcggc
     1021 tttatcggcc gaagcaggta gaggggcagt aagcagacgt tgcttacttt tgaaaggctt
     1081 tttttaagct gattttggaa atcagctcag tcagtgaaag gaccattgtt gatcgcacag
     1141 cctgttgata gcgctgaatt tgcattgcat acaaactgga gtctgctggt tcaaactgtg
     1201 gcggcggtgg taacgccgcc acgcagtgca gttcaccaaa gggtccaagg atttcgtcgt
     1261 cggtaaaggc gtactcgttg ccgtcgtgat ttagctcttc acgcaatgcc atcagcagtt
     1321 ccgcatcttc gtattcctgg cggttaatga cgcccaaccc gtaaatgagt tttaaacgca
     1381 cagaaagatc gcccagcgga ccgtcgccgt cgagtaacgg ttctacagca tacttcaccg
     1441 cgtaatcgtc tttgcggaat acctgaagca ccagaagatt taccgcctcg gtcaaaagct
     1501 cgacggcggt gatcagaaag cttcgcacgg ttttgccagc attcagacgc tcaagcacac
     1561 ggttttcaaa ggcctgggtt tgttccattg ttgcctgcat atctgacaat ctgttattcg
     1621 ggcgcagggt gtcctgcgcc tggtccacca ttattgcatt gctttataag cggttaccgc
     1681 ctcggataca acctcactgt tggcatcaag accggaaatc tgtgccagcg ccgcctgcgg
     1741 acctttgtca gcgatcagtg ctgccagttc ctgagcctgc ggatcatctt cactgcggaa
     1801 gtgcattgca ccagcaattc cctgaatcag attcttgtgc ggaaggctgt attccagcgt
     1861 accgagcagt ggcttgatca gacggtcgcc agcactcagt ttacgcagcg gctgacggcc
     1921 tacgcgctct acatcatctt tcagatacgg gttctcaaaa cgaccgagga ttttctggat
     1981 gtacgccgca tgtttgtctg cgtcaaagcc gtagcgcttg atcagtaccg caccactttc
     2041 ttccatcgca ccttttacca ccgcgcggat tttctcgtcg agaatagcgt cacgaatggt
     2101 ctgatgaccg gccagttttc cgaggtacgc ggttatagca tgacccgtgt tcagggtgaa
     2161 gagtttacgt tcgacaaatg ccatcaggtt gtcggttaac tccatgcttg ggatgttcgg
     2221 cagtgcgcct ttgaactgcg ttttatcgac aatccattcg ctgaaagttt ctaccgtcac
     2281 ttccagcgga tcgttagttg ccgaagccga aggcggtacg atgcggtcaa cggcggaatc
     2341 gacaaagcca acgtgttctt ctacccacgc tttggcgtct tccggcaggg cgttcatcac
     2401 atggcctttc agctgcgtgg taccgcgtac catgttttca caggcgatga tgttcagcgg
     2461 ggattcatta ccttgttctt tgcgtttcac cagccctttg gcgatagccg gagcaatacg
     2521 ttccagcaca accgggccaa cggcggtagt gactaaatcg acctgagcaa tcagatcaac
     2581 gacatcatca ccaatgctgc tgacagcatt gacgccggaa acggtatcta cctgctcggt
     2641 ttcaccaacc acatgaacct gatagctatg acgggcattc agggcatcaa gtaccacctg
     2701 attgacatcg gcaaacgtca gttggatacc cgcgtctgcc agcagtttac cgataaagcc
     2761 acgaccgata ttacctgcgc caaaatgtaa tgctttcata gtattaacct tcatcaatgt
     2821 ttttacccga gagggctggg gtgaggcttt tccctcaccc aaaccctctc cgtgaggaga
     2881 ggggcagcgc cggatgcggc gtaagcgcct tatccggcct acaagaacgt gcaaattcaa
     2941 caaatcgtga tgcatcctgt aggcctgata agcgtagcgc atcaggcaat taaccccacc
     3001 ttctccatgt ggagagggtg ggattggatt acttacgacc tgccaacagt tccagcactt
     3061 catccacgct ggtggtgtgt gccagacgct cgatgacgga ctcatcatcc agtgcattgg
     3121 tcaggctggt gataacctga atgtgctcgt tgttacgggc tgcaatacca atcaccagac
     3181 gggcaatgtc atcttcctct tcaccgaagc gcacgccttc cgggtactgg cagaacacca
     3241 cgcccgtttt cagtacgcga tctttcgctt caaccgtacc gtgtggcacc gcgatagact
     3301 cacccagata agtcggggtc agtttttcac gatccagcat cgcctgaacg tattccggct
     3361 caacgtaacc gcctttcacc agctgctcgc cagcaaaacg aatcgcttct tctttggttg
     3421 ctgctttgcg accgaggaag atgttctccg cgcccagttt gaacaggtta gcactggaat
     3481 cgtcaaagct gtctttcaga ctgtctttca ctttcacttc gttttcagta tggcgctggg
     3541 cagcaaccag acgttcggtt aggctggtgt acaggccgct gtcgaggaag ttggtcagcg
     3601 aaatatgctg tgcctgcgga acctggcgca tagcgcgttc ggtcaggtca cggtgagtga
     3661 tgacgaggtc cacatctggc ggcaggttgt tgatcgcgct gttagtgacc gaaatctgcg
     3721 acagacctgc atcctgaatt ttcttacgca gcacgcctgc gcccatcgca cttgaaccca
     3781 taccggcgtc acaggcaacg atgattttac gtacgtggct caggtcgtta gtcacatcgc
     3841 ccgcagacag cggagatgtg cctttagact cagctttcat gtcctgcata tgacgagttg
     3901 ctgcttcaat atcatcttct tctttcactt tgctggtttt cagcaaaata gcagagacaa
     3961 cgaaggagac agccatcgcc gcacacacac ccgcgatgtt agcgaaataa gcaccttttg
     4021 gtgtcatcgc cagtacagca aggatagaac ccggagatgc cggagaaacc agaccaccgc
     4081 ccaggatagt cagcgtgaac acgccagtca taccgccgag gatgactgcg aggatcagac
     4141 gcggattcat cagcacatac gggaagtaga tttcgtggat accacccagg aagtggatga
     4201 ttgccgcacc gcccgcagac tgtttagcgc taccacgacc aaagaacatg tacgccagca
     4261 gcacgcccat acctggacct gggttagctt caatcaggaa gaagattgat ttacccagtt
     4321 catgggactg ctgaataccc agcggcgaga agataccgtg gttaatggcg ttgttgagga
     4381 acaggatttt cgccggttca acaaagatag acgccagcgg cagcatgtca tggacaacca
     4441 tgaagttaac gcccgcagcc agcattttgg acagggcttc aacaatcggg ccaatgccga
     4501 ggaatgccag aatagcgagg atcatcccga tgatgcctgc ggagaagtta ttcaccagca
     4561 tctcaaaacc ggatttgatc ttaccgtcta cccagcggtc gaagtgctta atgcaccagc
     4621 cgcccagcgg acctgcaatc atagaaccga ggaacatcgg catgtctgcg ccgacgataa
     4681 cgcccatggt ggtgatggca ccgactacgc cgccacgttc gccgcctacc agcttaccac
     4741 cggtataacc gatcagcagc ggcaggagat aagtgatcat cggcccgacc agcttcgcca
     4801 gcgtctcgtt cggtaaccac cctgttggaa taaataacgc ggtgatgata ccccacgcga
     4861 taaacgcgcc gatatttggc atcaccatgt tgctgaggaa acgaccaaag ctttgcactt
     4921 tgatcttaat atcggatgac ataaaaacac cccttcttat gtttgctgtc gcgcaggctg
     4981 gaagcccgag gttttttgtt aatgtggcgg cagaggtagc cggaccttgt agatactgcg
     5041 aaatctggca ctgaatcggt taactgtcca gtcgacggcc ttttgtgtga tattaatcac
     5101 ataaatatag ggggtagaga ggtaattgac gtgacgttca tcacaaaacg cttgtgtaaa
     5161 aaagcaacaa ggcggcgatt ttcgctaaaa atggcattta aatgtgagta gtgtcacatt
     5221 tttgttttga tggtttgttg aatctttgtg atctgaatca caagatattt tcttacggcg
     5281 ttcacctgat gtgatctaca gcatgttatg ccttcgtcat acaatcgtta tgtaactaag
     5341 caactcatca cctctaaaaa ttattctttg gtgttatggc gagaatcgcg aacccggatt
     5401 attgtcaaaa tatcagcctg actcccttct ggctgccagc ccaaaaacaa cactgataaa
     5461 cgtgaatccg aggcagatat gtttctaaac tatttcgcgt tgggagtgct gatcttcgtc
     5521 tttctggtga ttttttatgg aatcatcgcg atacatgaca tcccttatct gattgccaaa
     5581 aagcgcaatc acccccatgc cgacgctatt catacggcgg gctgggtgag cctgtttact
     5641 ctgcatgtta tctggccgtt tctgtggatc tgggcgacgc tctatcaacc ggagcgtggc
     5701 tggggtatgc agtcacatgt tgcgtcgcag gagaaagcga ctgacccgga aatcgcctca
     5761 ctttctgacc gaatttcccg gctggagcat caactcgccg ccgagaaaaa gactgactat
     5821 tccacgttcc cggagatcta attatggatc tattgattgt tttaacttac gtggcgctgg
     5881 cgtgggcggt ctttaaaatc ttccgcattc cggtaaatca gtggacgctg gcgacggcgg
     5941 cgctgggagg cgtgtttctg gtgagtggtt tgattttgtt gatgaactac aaccaccctt
     6001 acacttttac cgcgcaaaag gcagtgatag cgatccctat cacgccacag gtgacgggaa
     6061 ttgttactga agtcactgac aagaataatc agcttattca aaagggcgag gtgcttttta
     6121 agctcgaccc ggttcgttac caggcgcgag ttgacagact tcaggctgac ctgatgacgg
     6181 cgacgcataa tataaagacg ctgcgtgcgc agctcactga agcgcaggcc aacaccaccc
     6241 aggtttcagc ggagcgcgac cgtctgttta aaaattatca acgttacttg aaaggcagcc
     6301 aggcggcggt gaatccgttc tcggaacgtg acatcgacga tgcgcggcaa aatttcctcg
     6361 cgcaggatgc gctggtgaaa ggctcggtgg cggagcaggc gcagatccag agccagctcg
     6421 acagtatggt taacggcgag caatcgcaga ttgtgagctt aagagcgcaa cttactgaag
     6481 caaaatataa ccttgagcag actgtcattc gcgcgccgag caatggctac gttactcagg
     6541 tactgatccg cccaggtaca tacgcagctg ccttgccgct gcgtccggtg atggtcttca
     6601 tccccgagca aaaacggcaa attgtcgccc aatttcggca aaactcgctg ttacgtctga
     6661 aacccggcga tgatgcggaa gtggtgttta acgcgctacc taggcaggtg tttcacggca
     6721 aactgactag tattttacct gtcgtgccag gcggttctta tcaggcgcag gggggattgc
     6781 aatcattaac ggtcgtgccc ggcacggacg gtgtgctggg aaccattgaa ctggacccta
     6841 acgatgatat cgatgcctta ctcgacggca tctacgccca ggtggcggtt tactccgacc
     6901 atttcagcca tgtttcggtg atgcggaaag tgctgctaag aatgaccagc tggatgcatt
     6961 atctttattt ggatcattga gggggagggg ggagattatg gaactttgct ccttgtaagg
     7021 actaattatt tttgcatatt acttcattag ctgcgatgat ttttctttaa tattcattat
     7081 gttaataagt tctggatgag tgtgctctca ttggattttt tatccgtctt gttctgccgc
     7141 aggatgagac tatacatcgt cgagatcgca atgatgatat gagttgttcc tcctgcgacg
     7201 gctctaatca aaaaagagca ggagtgcttt tccatctatt gcgatgatgg ctttattatc
     7261 tgaaggatga cagtcacatt taaaaaatat ttaatctata gatcacaatg tagggtcatg
     7321 gaatatatgt atacaactat tttcttcttc acttttaatt atcgtattca ttataaaact
     7381 aagttaaaaa aactcctgga gagtgagtta ctaatatatt tttaaataaa attaagttat
     7441 cattca
//
LOCUS       DADMHM010000192         7444 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.195, whole genome shotgun sequence.
ACCESSION   DADMHM010000192 DADMHM010000000
VERSION     DADMHM010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7444)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7444)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7444
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.195"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            7..150
                     /locus_tag="JN125_003471"
     CDS             7..150
                     /locus_tag="JN125_003471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HAY8873116.1"
                     /translation="MIMAYSVIGLISALKMPEVKDRDLSALEDAAEDQQRVVRAAQPS
                     RSL"
     gene            239..1699
                     /locus_tag="JN125_003472"
     CDS             239..1699
                     /locus_tag="JN125_003472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannitol dehydrogenase family protein"
                     /protein_id="HAY8873117.1"
                     /translation="MGNNLLSAKATLPVYDRNNLAPRIVHLGFGAFHRAHQGVYADIL
                     ATEHFSDWGYYEVNLIGGEQQIADLQQQDNLYTVAEMSADAWTARVVGVVKKALHVQM
                     DGLETVLAAMCEPQIAIVSLTITEKGYFHSPATGQLMLDHPMVAADVQNPHQPKTATG
                     VIVEALARRKAAGLPAFTVMSCDNMPENGHVMRDVVTSYAKAVDVKLAQWIEDNVTFP
                     STMVDRIVPAVTEDTLAKIEQLTGVRDPAGVACEPFRQWVIEDNFVAGRPEWEKAGAE
                     LVSDVLPYEEMKLRMLNGSHSFLAYLGYLAGYQHINDCMEDEHYRYAGYGLMLQEQAP
                     TLKVQGVDLQDYANRLIERYSNPALRHRTWQIAMDGSQKLPQRMLDSVRWHLAHDSKF
                     DLLALGVAGWMRYVGGVDEQGNPIEISDPLLPVIQKAVQSSAEGKARVQSLLAIKAIF
                     GDDLPDNSLFTAKVTEAYLSLLAHGAKATVAKYSVK"
     gene            complement(1735..1938)
                     /gene="ydfZ"
                     /locus_tag="JN125_003473"
     CDS             complement(1735..1938)
                     /gene="ydfZ"
                     /locus_tag="JN125_003473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative selenium delivery protein YdfZ"
                     /protein_id="HAY8873118.1"
                     /translation="MTTYDRNRNAITTGSRVMVSGTGHTGKILSIDTEGLTAEQIRRG
                     KTVVVEGCEEKLAPLDLIRLGMN"
     gene            complement(2116..2802)
                     /locus_tag="JN125_003474"
     CDS             complement(2116..2802)
                     /locus_tag="JN125_003474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAY8873119.1"
                     /translation="MTVETQLNPTQPVNQQIYRILRRDIVHCLIAPGTPLSEKEVSVR
                     FNVSRQPVREAFIKLAENGLIQIRPQRGSYVNKISMAQVRNGSFIRQAIECAVARRAA
                     SMITESQCYQLEQNLHQQRIAIERKQLDDFFELDDNFHQLLTQIADCQLAWDTIENLK
                     ATVDRVHYMSFDHVSPPEMLLRQHLDIFSALQKRDGDAVERAMTQHLQEISESVRQIR
                     QENSDWFSEE"
     gene            complement(2891..3637)
                     /gene="ydfG"
                     /locus_tag="JN125_003475"
     CDS             complement(2891..3637)
                     /gene="ydfG"
                     /locus_tag="JN125_003475"
                     /EC_number="1.1.1.298"
                     /EC_number="1.1.1.381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional NADP-dependent 3-hydroxy acid
                     dehydrogenase/3-hydroxypropionate dehydrogenase YdfG"
                     /protein_id="HAY8873120.1"
                     /translation="MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL
                     GDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETM
                     IDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLN
                     LRTDLHGTAVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWW
                     VSTLPAHVNINTLEMMPVTQSYAGLNVHRQ"
     gene            3774..5819
                     /gene="dcp"
                     /locus_tag="JN125_003476"
     CDS             3774..5819
                     /gene="dcp"
                     /locus_tag="JN125_003476"
                     /EC_number="3.4.15.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707439.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-dipeptidase Dcp"
                     /protein_id="HAY8873121.1"
                     /translation="MTTMNPFLVQSTLPYLAPHFDQIANHHYRPAFDEGMQQKRAEIA
                     AIALNPQTPDFNNTILALEQSGELLTRVTSVFFAMTAAHTNDELQRLDEQFSAELAEL
                     ANDIYLNGELFARVDAVWQRRESLGLDSESIRLVEVIHQRFVLAGAKLAQADKAKLKV
                     LNTEAATLTSQFNQRLLAANKSGGLVVNDIAQLAGMSEQEIALAAEAAREKGLDNKWL
                     IPLLNTTQQPALAEMRDRATREKLFIAGWTRAEKNDANDTRAIIQRLVEIRAQQAKLL
                     DFPHYAAWKIADQMAKTPEAALNFMREIVPAARQRASDELASIQAVIDKQQGGFSAQP
                     WDWAFYAEQVRREKFDLDEAQLKPYFELNTVLNEGVFWTANQLFGIKFVERFDIPVYH
                     PDVRVWEIFDHNGVGLALFYGDFFARDSKSGGAWMGNFVEQSTLNETHPVIYNVCNYQ
                     KPAAGEPALLLWDDVITLFHEFGHTLHGLFARQRYATLSGTNTPRDFVEFPSQINEHW
                     ATHPQVFARYARHYQSGAAMPDELQQKMRNASLFNKGYEMSELLSAALLDMRWHCLEE
                     NEAMQDVDDFELRALVAENMDLPAIPPRYRSSYFAHIFGGGYAAGYYAYLWTQMLADD
                     GYQWFVEQGGLTRENGQRFREAILSRGNSEDLERLYRQWRGKAPQIMPMLQHRGLNI"
     gene            complement(5864..6382)
                     /locus_tag="JN125_003477"
     CDS             complement(5864..6382)
                     /locus_tag="JN125_003477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo-tetronate isomerase"
                     /protein_id="HAY8873122.1"
                     /translation="MNINKDKIVQLADTDTIENLTSALSQRLIADQLRLTTAESCTGG
                     KLASALCAAEDTPKFYGAGFVTFTDQAKMKILSVSQQSLERYSAVSEKVAAEMATGAI
                     ERADADVSIAITGYGGLEGGEDGTPAGTVWFAWHIKGQTYTAVMHFAGDCETVLALAV
                     RFALVQLLQLLL"
     gene            6658..7050
                     /gene="ydeI"
                     /locus_tag="JN125_003478"
     CDS             6658..7050
                     /gene="ydeI"
                     /locus_tag="JN125_003478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdeI family stress tolerance OB fold protein"
                     /protein_id="HAY8873123.1"
                     /translation="MKFQAIVLASFLVMPYALADDQGGLKQDAAPPPPHAIEDGYRGT
                     DDAKKMTVDFAKNMHDGASVSLRGNLISHKGEDRYVFRDKSGEINVVIPAAVFDGREV
                     QPDQMINISGSLDKKSAPAVVRVTHLQK"
BASE COUNT         1917 a         1711 c         1864 g         1952 t
ORIGIN      
        1 gccattatga tcatggcata ttcagtgatt ggtttaatct ctgcgctgaa aatgccagag
       61 gtgaaagacc gtgatttaag tgcgctggaa gacgctgcgg aagatcaaca gcgtgttgta
      121 agagctgcgc aaccttccag aagtctgtaa accctcaatc ccttctctta ccggagaggg
      181 gatttttatt catataacaa aacatatagc ttgccatatt taaatttaag gaattgttat
      241 gggaaataat ttgttatcag caaaagcgac actccctgtt tatgatcgta ataacctggc
      301 cccaagaatt gttcatttag gctttggtgc atttcaccgt gcgcatcagg gcgtgtatgc
      361 cgatattctt gctacagaac atttcagtga ctggggatat tatgaggtca acttaatcgg
      421 cggcgaacag caaattgccg atttacaaca gcaagataat ctttataccg ttgcggaaat
      481 gtcggccgat gcgtggacgg ctcgcgtcgt tggcgtcgtt aaaaaagcct tgcacgtaca
      541 gatggatggc ttagaaaccg tgttggctgc gatgtgtgaa ccgcaaatcg cgattgtctc
      601 tctgacaatc accgaaaaag ggtatttcca ctctccggcg accggacagt taatgctcga
      661 tcacccgatg gtcgctgccg acgtgcaaaa tccccaccag ccgaaaacag caacaggggt
      721 gattgttgag gcgctggccc gccgtaaagc ggcaggactt cccgcattta ccgtcatgtc
      781 atgtgacaac atgccagaaa acggtcatgt tatgcgtgac gttgtcactt catacgcgaa
      841 agctgttgat gtaaaactgg cacaatggat cgaagataac gtgactttcc catcaacaat
      901 ggtggaccgt attgtgcccg cagtgacaga ggatacgctg gcgaaaatcg aacaacttac
      961 cggtgtgcgc gatcctgcgg gcgttgcctg tgaacctttc cgccagtggg taatagaaga
     1021 taactttgtt gccggacgtc cagaatggga aaaagcggga gccgaactgg ttagtgatgt
     1081 gctgccttat gaagagatga agttgcgcat gctcaacggc agtcattcat tcctggcgta
     1141 tttgggttat cttgccggat atcagcacat taatgactgc atggaagatg aacattatcg
     1201 ttatgcgggg tatggcttga tgttgcagga acaagcgccg acgctgaaag tgcagggcgt
     1261 tgatttgcaa gattacgcta accgattaat tgaacgctat agcaatccgg cgttacgtca
     1321 tcgaacctgg cagattgcga tggatggtag ccagaaattg ccacagcgga tgttggattc
     1381 tgttcgctgg catctggcgc atgacagcaa gttcgatctg ctggcgctgg gcgtcgcggg
     1441 ttggatgcgt tatgtcggtg gtgttgatga acagggaaat ccgatagaaa tcagtgaccc
     1501 actgttacct gttattcaga aggctgtaca aagtagtgcc gaagggaaag cgcgcgtcca
     1561 gtcattgctg gcgattaagg caatctttgg tgatgatttg ccagacaata gcttgtttac
     1621 tgcaaaagtg acggaagcgt acttgtcttt attagcgcat ggcgcgaaag cgaccgtggc
     1681 gaaatattcc gtgaagtaaa aaaagcaatg ccgccatcgg cggcattcac acacttagtt
     1741 catgccgaga cgaatcaggt ccagaggtgc cagtttctct tcacaacctt caacaactac
     1801 ggtttttccg cggcggattt gctcagcggt cagaccttca gtatcaatcg acaggatctt
     1861 gccagtgtga ccggtgccgc taaccataac acggctgcca gtggtgattg cgttacggtt
     1921 acgatcgtag gtcgtcatag gtgttttctc ctttctgatt tacagtcgaa gcccacgtaa
     1981 cgggcgcaat ataaatactc ctgtcgagtg aaatattttt tgtttttgat caagctcaca
     2041 tcttttttga tgcatgcatg agccgtaagg cggggggaaa agcctctcat cccggatggg
     2101 atgagagtaa atgaattact cttcgctaaa ccagtcgctg ttttcctggc ggatctggcg
     2161 cacggattcg ctgatttcct gcaaatgttg cgtcattgca cgttctaccg catcgccatc
     2221 acgtttttgc agggcagaga aaatatcaag atgctggcgt aacagcattt ctggtggaga
     2281 aacatggtcg aaactcatat agtgcacgcg atcaacggtc gctttcaggt tctcaatggt
     2341 atcccacgcc agttgacagt cggcaatctg cgtcaggagt tgatggaagt tgtcatcaag
     2401 ttcaaaaaaa tcatccagtt gcttgcgctc aatggcaatg cgttgctggt gaagattttg
     2461 ttccagttgg tagcactggc tttcggtaat catgctcgcc gcccgacgcg ccaccgcgca
     2521 ctcaatggcc tgacggataa aactgccgtt gcgcacctgg gccatggaaa ttttgttgac
     2581 gtagctgcca cgctgtggac gaatttgaat caggccgttt tccgccagtt taataaaggc
     2641 ttcacgaacc ggctggcgtg acacattgaa acgaacagaa acttcttttt ccgacaacgg
     2701 tgtgcctgga gcaatcaggc aatggacaat gtcgcgacga aggatacgat aaatttgctg
     2761 attgacaggc tgtgtgggat taagttgcgt ttcgacggtc attcgttctt gcttgtgagt
     2821 gagttaactg catgagtcta ccactttttt gtgacaagca ataacccggc agttacgccg
     2881 ggtataaaaa ttactgacgg tggacattca gtccggcata gctttgggta accggcatca
     2941 tttccagggt attgatattg acgtgagcag gcagcgttga cacccaccaa acggcttcgc
     3001 tgacatcttc tggcgtcaat gcaacggtat tttgataggt tttttccgct ttaccgtcat
     3061 cgcctttaaa gcggacattg gaaaactcgg tgccacccac cagacccggt tcgatgtcgg
     3121 tgacgcgcac cgccgtacca tgcaggtccg tacgcagatt caggctaaac tgacgaacaa
     3181 acgctttcgt cgcaccgtaa acgttaccac cggcataagg ccagctacct gccgttgagc
     3241 caatgttaat aatatgacca tgattacgtt caaccatacc cggtaagacg gcgcgcgtca
     3301 tatataccag gcctttgttg ttggtatcaa tcatcgtttc ccagtcttca acgctggctt
     3361 tatgcgcagg ctccatgccc aacgccaggc cggcattatt taccaggata tcaatattgc
     3421 accactcggc aggaagcgat gccagcatct cttcaatagc ggcgcggttg cgaacgtcca
     3481 gttgggcgat gtacagatta tctcccagtt cgtcttttaa ctcctgcaac cgttcctggc
     3541 gacggccagt ggcgataact ttatgccctt gttgaataaa acgacgagta atgcattcac
     3601 caaaacctgc cgttgctcca gttactaaaa cgatcatctc actgttcctc aacgcttttg
     3661 tgtgtcaata acatagcacg tgatgcttaa gagcgggtaa tactggtttg taagattgca
     3721 ctccgttatc agtaagccta cgctatggaa cacctcgcgt tcaggagaag aaaatgacaa
     3781 caatgaatcc tttccttgtg caaagcacac taccgtatct ggctccccat tttgatcaaa
     3841 ttgccaatca tcactatcgt ccggcattcg atgagggaat gcagcaaaag cgggcagaaa
     3901 ttgctgccat cgcgcttaac ccgcaaacgc ctgatttcaa caatactatt ctggcactgg
     3961 aacaaagcgg agaattactt acccgcgtta ccagcgtctt ttttgcgatg actgcggcgc
     4021 ataccaatga tgaattacag cgtcttgatg aacagttttc cgctgaactg gcggaactgg
     4081 ctaatgatat ctatctgaac ggtgaattat tcgcgcgggt agatgctgtc tggcagcgcc
     4141 gtgaatccct ggggcttgat agtgaatcca tccgcctggt ggaggtgatt catcaacgtt
     4201 ttgtccttgc cggagccaaa cttgcgcaag ctgataaagc aaaattaaaa gtactgaata
     4261 cagaagctgc gaccctgacc agccagttta accagcgatt actggcagca aataaatccg
     4321 gcggtctggt tgtgaacgat atcgcgcagc tggcaggaat gagtgagcaa gagattgcgc
     4381 tggcggcaga ggcggctcgc gagaaaggtc tggataacaa atggctgatt ccgctgctga
     4441 ataccaccca acaaccggcg cttgccgaga tgcgcgatcg tgcgacgcgt gaaaaactgt
     4501 ttattgcggg ctggacgcga gcggaaaaaa atgatgccaa tgatacccgc gctatcattc
     4561 aacgtctggt agagattcgc gcacagcagg cgaaactgct tgattttcct cattatgccg
     4621 catggaaaat cgccgatcag atggcaaaaa cgccagaagc agcactcaac tttatgcggg
     4681 aaattgttcc agcggcgcgt caacgtgcta gcgatgaatt agcctccata caggcggtta
     4741 tcgataagca gcaaggcggg tttagcgcgc agccgtggga ctgggcattt tatgccgaac
     4801 aggtacggcg ggagaaattt gatcttgatg aggcgcagct caagccatat tttgaattaa
     4861 acacggtgtt gaatgaaggt gtattctgga ccgcgaatca gctcttcggt attaagtttg
     4921 tcgaacgttt tgatattcct gtctaccatc ctgacgttcg tgtgtgggaa atttttgatc
     4981 ataatggcgt gggactggcg ttattttacg gtgatttctt cgcccgtgat tcaaaaagcg
     5041 gcggtgcatg gatgggcaat tttgttgagc aatcaacgct taatgaaacg catccggtaa
     5101 tttataacgt ttgcaattat cagaaacccg ctgccggtga gcctgcgttg ttactctggg
     5161 atgatgtcat aaccttattc catgaatttg gtcatacgct gcacggcctt tttgcccgcc
     5221 agcgttatgc cacgctttcc ggcaccaaca cgccgcgtga ttttgtcgaa tttccgtcgc
     5281 aaatcaacga acactgggca acgcatccgc aggtattcgc tcgctacgcc cggcattatc
     5341 agagcggggc agcaatgcct gacgaactgc aacagaaaat gcgtaatgcc agcctgttca
     5401 acaaagggta tgagatgagc gaactgctta gcgccgcact tctcgatatg cgctggcatt
     5461 gcctggaaga aaacgaagca atgcaggatg tcgatgattt tgaattgcgg gcgctggtgg
     5521 cggaaaatat ggatcttcct gctataccgc cacgctatcg cagcagttat ttcgcccata
     5581 tttttggtgg cggatatgct gcaggttatt acgcttatct gtggacgcaa atgttggccg
     5641 atgatggtta ccagtggttt gttgagcagg gcggattaac gcgtgaaaat gggcagcgtt
     5701 ttcgcgaggc gatcctttcc agaggtaaca gcgaagatct ggaacgcctg tatcgacaat
     5761 ggcgcggtaa ggctcctcag attatgccga tgctgcaaca tcgtggcttg aatatataaa
     5821 caccaccaat ggctggcctg gagatatcgc caggccagcc tggttatagc agtaattgca
     5881 gcagctggac gagggcaaac ctcaccgcta aagctaatac cgtttcgcag tcgccagcaa
     5941 aatgcataac cgcagtgtag gtctggcctt taatatgcca cgcgaaccag acggtacccg
     6001 ctggcgtacc atcttcaccg ccctccagtc cgccgtagcc ggtaatggca atactgacat
     6061 cagcatccgc acgctctatg gcacctgttg ccatttctgc tgccactttc tcactcaccg
     6121 cagaatatcg ttcaagagat tgctggctta cgctgaggat tttcatcttt gcctgatcgg
     6181 tgaaagtaac aaagcctgca ccgtaaaatt tgggtgtatc ttcagctgca cacagggcgc
     6241 tagccaactt accgccggtg catgattcgg cggtagttaa gcgtaattga tccgcgataa
     6301 gtctttgact caacgcggat gtcaggtttt caatagtgtc ggtatctgcg agttgtacaa
     6361 ttttatcttt attaatgttc actgtttttt gtccacgcta ttatatgtaa aggtgatttg
     6421 ctttttctgt atgctcgtcc aatataataa ttttcaaaca tataaatccg attattctga
     6481 aaatatgttt aagactcttc aatcttctta actttagtga gttaaattct ctgaatattt
     6541 gacagctagt gggctgattt taaatgcctt ataacaattg gcagtattct tatttggcaa
     6601 ttataaaaat agcaaccaga cttaataagt caaaccaaac gcaattaagg agttagtatg
     6661 aaatttcagg ccattgtatt agcaagtttt cttgtcatgc cttatgcgtt ggcagatgac
     6721 cagggcggtt taaaacagga tgcagcgcca ccgccgcctc atgcaataga agatggctat
     6781 cgcggaaccg atgatgcaaa aaaaatgacc gttgatttcg caaaaaacat gcacgatggc
     6841 gcttcggttt cactacgcgg taatttgatt tctcacaaag gagaggaccg ttacgttttt
     6901 cgcgataaga gcggtgaaat taatgtcgtt attcctgcgg ccgtctttga tggacgagaa
     6961 gttcagccgg accagatgat caacattagc ggtagtctgg ataagaaaag cgcgccggcc
     7021 gtcgttcggg tcactcattt gcagaaataa aaataaatta gcctgatggc ctgaactact
     7081 gggccattag ggtattgggt tatgctattt gtcatccttt tatttacgat aatgcagagg
     7141 tgatttacag aattaaacac ttttttatcc gctgattttg ttttaaatca caatgttatc
     7201 tcagagatga ctcataactt cggatttcta tgaaaatatt gacgtaattt tgcttttctc
     7261 tcgttagaat agcgcgcaca aggaactgtg aaaaaggagt ggcaatgatc aagaagacaa
     7321 cggaaattga tgccatcttg ttaaatctca ataaggctat cgatgcccac taccagtggc
     7381 tggtgagtat gtttcacagc gtggtcgcga gagatgccag taagccagaa ataacggata
     7441 acca
//
LOCUS       DADMHM010000193         7437 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.196, whole genome shotgun sequence.
ACCESSION   DADMHM010000193 DADMHM010000000
VERSION     DADMHM010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7437)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7437)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7437
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.196"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            167..274
                     /locus_tag="JN125_003479"
     CDS             167..274
                     /locus_tag="JN125_003479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588455.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873124.1"
                     /translation="MPTKRFDKKHWKMVVVLLAICGAMLLLRWAAMIWG"
     gene            complement(327..1085)
                     /locus_tag="JN125_003480"
     CDS             complement(327..1085)
                     /locus_tag="JN125_003480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdiY family protein"
                     /protein_id="HAY8873125.1"
                     /translation="MKLLKTVPAIVMLAGGMFASLNAAADDSVFTVMDDPASAKKPFE
                     GNLNAGYLAQSGNTKSSSLTADTTMTWYGQTTAWSLWGNASNTSSNDERSSEKYAAGG
                     RSRFNLTDYDYLFGQASWLTDRYNGYRERDVLTAGYGRQFLNGPVHSFRFEFGPGVRY
                     DKYTDNASETQPLGYASGAYAWQLTDNAKFTQGVSVFGAEDTTLNSESALNVAINEHF
                     GLKVAYNVTWNSEPPESAPEHTDRRTTLSLGYSM"
     gene            1372..2301
                     /gene="pfkB"
                     /locus_tag="JN125_003481"
     CDS             1372..2301
                     /gene="pfkB"
                     /locus_tag="JN125_003481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416237.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase II"
                     /protein_id="HAY8873126.1"
                     /translation="MVRIYTLTLAPSLDSATITPQIYPEGKLRCTAPVFEPGGGGINV
                     ARAIAHLGGSATAIFPAGGATGEHLVSLLADENVPVATVEAKDWTRQNLHVHVEASGE
                     QYRFVMPGAALNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLISASQKQG
                     IRCIVDSSGEALSAALAIGNIELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKA
                     KRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENASLEEMV
                     RFGVAAGSAATLNQGTRLCSHDDTQKIYAYLSR"
     gene            2402..2692
                     /gene="ghoS"
                     /locus_tag="JN125_003482"
     CDS             2402..2692
                     /gene="ghoS"
                     /locus_tag="JN125_003482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type V toxin-antitoxin system endoribonuclease
                     antitoxin GhoS"
                     /protein_id="HAY8873127.1"
                     /translation="MASGDLVRYVITVMLHEDTLTEINELNNYLTRDGFLLTMTDDEG
                     NIHELGTNTFGLISTQSEEEIRELVSGLTQSATGKDPEITITTWEEWNSNRK"
     gene            2798..3658
                     /locus_tag="JN125_003483"
     CDS             2798..3658
                     /locus_tag="JN125_003483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructosamine kinase family protein"
                     /protein_id="HAY8873128.1"
                     /translation="MWQAISRLLSEQLGEGEIELRNELPGGEVHAAWHLRYAGHDFFV
                     KCDERELLPGFTAEADQLELLSRSKTVTVPKVWAVGADRDYSFLVMDYLPPRPLDAHS
                     AFILGQQIARLHQWSDQPQFGLDFDNSLSTTPQPNTWQRRWSTFFAEQRIGWQLELAA
                     EKGIAFGNIDAIVEHIQQRLASHQPQPSLLHGDLWSGNCALGPDGPYIFDPACYWGDR
                     ECDLAMLPLHTEQPPQIYDGYQSVSPLPADFLERQPVYQLYTLLNRARLFGGQHLVIA
                     QQSLDRLLAA"
     gene            complement(3699..4235)
                     /locus_tag="JN125_003484"
     CDS             complement(3699..4235)
                     /locus_tag="JN125_003484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873129.1"
                     /translation="MTYQQAGRIAVLKRILGWVIFIPALISTLISLLKFMNTRQENQE
                     GINAVMLDFTHVMIDMMQANTPFLNLFWYNSPTPNFNGGVNVMFWVIFILIFVGLALQ
                     DSGARMSRQARFLREGVEDQLILEKAKGEEGLTREQIESRIVVPHHTIFLQFFSLYIL
                     PVICIAAGYVFFSLLGFI"
     gene            4382..5050
                     /gene="hxpB"
                     /locus_tag="JN125_003485"
     CDS             4382..5050
                     /gene="hxpB"
                     /locus_tag="JN125_003485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexitol phosphatase HxpB"
                     /protein_id="HAY8873130.1"
                     /translation="MSTPRQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRN
                     ELPDTLGLRIDMVVDLWYARQPWNGPSRQEVVERVIARAISLVEETRPLLPGVREAVA
                     LCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAK
                     LGVDPLTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLANVKLSSLTELTAK
                     DLLG"
     gene            5213..5803
                     /locus_tag="JN125_003486"
     CDS             5213..5803
                     /locus_tag="JN125_003486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707386.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HAY8873131.1"
                     /translation="MTAEGHLLFSIACAVFAKNAELTPVLAQGDWWHIVPSAILTCLL
                     PDIDHPKSFLGQRLKWISKPIARAFGHRGFTHSLLAVFALLATFYLKVPEGWFIPADA
                     LQGMVLGYLSHILADMLTPAGVPLLWPCRWRFRLPILVPQKGNQLERFICMALFVWSV
                     WMPHSLPENSAVRWSSQIINTLQIQFHRLIKHQVEY"
     gene            5936..7327
                     /locus_tag="JN125_003487"
     CDS             5936..7327
                     /locus_tag="JN125_003487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005120792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-cystine transporter"
                     /protein_id="HAY8873132.1"
                     /translation="MNFPLIANIVVFVVLLFALAQTRHKQWSLAKKVLVGLVMGVVFG
                     LALHTIYGSDSQVLKDSVQWFNIVGNGYVQLLQMIVMPLVFASILSAVARLHNASQLG
                     KISFLTIGTLLFTTLIAALVGVLVTNLFGLTAEGLVQGGAETARLNAIESNYVGKVFD
                     LSVPQLVLSFIPKNPFADLTGANPTSIISVVIFAAFLGVAALKLLKDDAPKGERVLAA
                     IDTLQSWVMKLVRLVMQLTPYGVLALMTKVVAGSNLQDIIKLGSFVVASYLGLLIMFA
                     VHGILLGINGVSPLKYFRKVWPVLTFAFTSRSSAASIPLNVEAQTRRLGVPESIASFA
                     ASFGATIGQNGCAGLYPAMLAVMVAPTVGINPLDPMWIATLVGIVTVSSAGVAGVGGG
                     ATFAALIVLPAMGLPVTLVALLISVEPLIDMGRTALNVSGSMTAGTLTSQWLKQTDKA
                     ILDSEDDAELAHR"
BASE COUNT         1870 a         1809 c         1839 g         1919 t
ORIGIN      
        1 attttcgata tatatgttga tgcataatat tattttttca taaaacgcag aaacagtgac
       61 caggtgtaca acgccaccca acggctgtaa taacaaaaaa tcccttgatg cccgtccctt
      121 ttgttacact ccgttatcac gcacaagaga tatgcaggac actggtatgc cgactaaacg
      181 ctttgataaa aaacactgga agatggtggt ggtgctactg gcaatctgtg gcgctatgtt
      241 gttgctacgt tgggcagcaa tgatttgggg ctgagcagtg acaaacgaag acagccagac
      301 cgcataacac ggtccggcag ataattttac atgctgtagc ccagcgataa ggttgtccga
      361 cggtcggtat gttccggtgc agactctgga ggttcagagt tccatgtaac gttgtaagcc
      421 accttcagtc caaaatgttc attaatagca acatttaatg cgctttcgga gttcagcgtt
      481 gtgtcttccg cgccaaagac cgaaacaccc tgcgtaaatt tagcgttgtc agtcaactgc
      541 catgcataag ccccggaggc atagcccagc ggctgagttt cactggcatt gtcggtatat
      601 ttgtcgtaac gcacacctgg accgaattca aagcggaaac tgtgtaccgg gccattcaaa
      661 aactgacgac cataacccgc ggtcaacaca tcgcgctctc gatagccgtt ataacggtct
      721 gtcagccagc ttgcctgacc aaataaatag tcataatcag ttaaattaaa gcggctacgc
      781 ccgcccgccg catatttttc tgaagaacgc tcatcattag aagaagtatt actggcgttc
      841 ccccacagcg accaggcagt ggtttgtcca taccaggtca tggtggtgtc agccgtaagt
      901 gaggagcttt tcgtattgcc tgattgtgca agatatcctg cgttcagatt accttcgaaa
      961 ggttttttag cgctggcagg atcgtccatg acagtaaaaa cggaatcatc ggcagctgca
     1021 ttcagtgacg caaacatgcc ccccgccaac ataacgatgg caggaactgt cttcaaaagc
     1081 ttcatttatc aagagtccgt acaacaaaaa aagagaccat cgcggtcccg gaaactttct
     1141 taaggatcaa agattagcgt ccctggaaag gtaacgaatt ataaaaaggc gcgaataact
     1201 tagcaatgta ttcttatttc attttttgaa taagcatgtg gcgaaaacag atttttattt
     1261 atatatattt atctgcaaaa ttttaaataa agctccaata aatcatattg ttaatttctt
     1321 cactttccgc tgattcggtg ccagactgaa atcagcctat aggaggaaat gatggtacgt
     1381 atctatacgt tgacacttgc gccctctctc gatagcgcaa caattacccc gcaaatttat
     1441 cccgaaggaa aactgcgctg taccgcaccg gtgttcgaac ccgggggcgg cggcatcaac
     1501 gtcgcccgcg ccattgccca tcttggaggc agtgccacag cgatcttccc ggcgggtggc
     1561 gcgaccggcg aacacctggt ttcactgttg gcggatgaaa atgtccccgt cgctactgta
     1621 gaagccaaag actggacccg gcagaattta catgtacatg tggaagcaag cggtgagcag
     1681 tatcgttttg ttatgccagg cgcggcatta aatgaagatg agtttcgcca gcttgaagag
     1741 caagttctgg aaattgaatc cggggccatc ctagtcataa gcggaagcct gccgccaggt
     1801 gtgaagctgg aaaaattaac ccaactgatt tccgcttcgc aaaaacaagg gatccgctgc
     1861 atcgtcgaca gttctggcga agcgttaagt gcagcactgg caattggtaa catcgagttg
     1921 gttaagccta accaaaaaga actcagtgcg ctggtgaatc gcgaactcac ccagccggac
     1981 gatgtccgca aagccgcgca ggaaatcgtt aatagcggca aggccaaacg ggttgtcgtt
     2041 tcccttggtc cacaaggagc gctgggtgtt gatagtgaaa actgcattca ggtggtgcca
     2101 ccaccggtga aaagccagag taccgttggc gctggtgaca gcatggtcgg cgcgatgaca
     2161 ctgaaactgg cagaaaatgc ctctcttgaa gagatggtcc gttttggcgt agctgcgggg
     2221 agtgcagcca cactcaatca gggaacacgt ctgtgctccc atgacgatac gcaaaaaatt
     2281 tacgcttacc tttcccgcta acaaaaacat tcccccagca ttgggggaat caccaccaac
     2341 ctgtcggcaa cgcgtttctc cgactatgct caaaagtcat gtgataacaa aggggtgaac
     2401 tatggccagt ggcgatcttg tccgttatgt cataaccgtc atgttgcatg aggatacatt
     2461 gactgaaatt aacgagttga ataattacct gactcgcgac ggttttttgc tcaccatgac
     2521 ggatgatgag ggaaatatcc atgagctggg gactaacact tttggactta tcagtaccca
     2581 aagtgaagaa gaaattagag aactggtttc ggggcttacc caaagtgcaa ccggcaaaga
     2641 tcctgaaatc accatcacga cctgggagga atggaatagc aacagaaaat aaatggtttt
     2701 tgggcaataa tcagtctgtg gtgtgcgtta gctcgtgttt ttacaccgca ttcttgcgct
     2761 aaccttatga tctggcagac aacatgggag agacatcatg tggcaggcaa tcagtcgtct
     2821 tttgagcgag cagttaggtg aaggcgaaat cgaactgcgt aatgaactgc ctggcggaga
     2881 agtccatgcc gcatggcatt tgcgctatgc aggacatgac tttttcgtca aatgtgatga
     2941 aagggaactg cttcccggtt ttaccgccga agccgaccaa ctggagttac tgtcgcgtag
     3001 taaaaccgtc accgtgccta aggtttgggc agtaggcgct gaccgtgact acagttttct
     3061 ggtgatggat tatctcccac ctcgtccgct ggatgcgcat agcgcattta ttcttggtca
     3121 gcaaattgcg cgtttacatc aatggagtga ccaaccacaa tttggcctcg attttgataa
     3181 ctcgctctcc acaactccac agcccaacac ctggcaacgt cgctggtcaa cgttttttgc
     3241 tgaacaacgg attggctggc agttggaact ggcagcagag aaagggatcg ctttcggcaa
     3301 tatcgacgcc atcgtcgagc atattcagca gcgtctggcc tcgcatcaac cgcagccttc
     3361 tctgttgcac ggcgatttat ggtccggcaa ctgtgcgctg ggtccggatg gcccgtacat
     3421 tttcgaccct gcctgctact ggggtgaccg agagtgcgac ctggcgatgt taccgctgca
     3481 tactgaacag ccgccacaaa tctatgacgg ctatcagtca gtatccccgc tacctgccga
     3541 tttccttgaa cgtcaaccgg tttaccaact ctacacgctg ttaaatcgtg caaggttatt
     3601 tggcggtcag catttggtta ttgctcagca gtcactggat agattattag cagcatgata
     3661 tgggttgaag ataatggccg ctctgtgcgg ccttttgatt aaataaaccc aagcagagaa
     3721 aagaacacat aacctgcagc aatacaaata accggcagga tatacagtga gaaaaactgc
     3781 aggaaaatag tatggtgcgg aacaacaata cgggactcaa tttgttcacg cgttagcccc
     3841 tcttcccctt tggctttttc cagaatgagt tgatcttcaa caccttcccg caagaagcgc
     3901 gcctggcgac tcattcgggc accggaatcc tgcaacgcca gtccgacaaa aatcaggatg
     3961 aaaatcaccc agaacataac gttcacgcca ccattaaaat tgggcgtcgg ggagttatac
     4021 cagaacagat tcaaaaaagg cgtattcgcc tgcatcatat cgatcatgac atgagtaaag
     4081 tcgagcatga ccgcattaat gccttcctgg ttttcctgcc gggtattcat aaatttcagc
     4141 aaagaaatca atgtagagat caatgcaggt ataaaaatca cccaacccaa aatccttttc
     4201 aaaacagcaa tgcgtccagc ttgttgatac gtcatgagtt ctccttgatt aagacgcgtc
     4261 gtttcactta gtttacctgt agatatctgt tttcgcccat tctttaaagg cgatatgata
     4321 ggcgcttaat cataagcacg gcttaatacc ttacacataa tgctctaaag gagaggttgt
     4381 aatgtcaacc ccgcgtcaga ttcttgctgc aatttttgat atggatggat tacttatcga
     4441 ctcagaacct ttatgggatc gagccgaact ggatgtgatg gcaagcctgg gggtggatat
     4501 ctcccgtcgt aacgagctgc cggacacctt aggtttacgc atcgatatgg tggtcgatct
     4561 ttggtacgcc cggcaaccgt ggaatgggcc aagccgtcag gaagtagtag aacgggttat
     4621 tgcccgtgcc atttcactgg ttgaagagac acgtccatta ttaccaggcg tgcgcgaagc
     4681 tgttgcgtta tgcaaagaac aaggtttatt ggtgggactg gcctccgcgt caccactaca
     4741 tatgctggaa aaagtgttga ccatgtttga cttacgcgac agtttcgatg ccctcgcctc
     4801 ggctgaaaaa ctgccttaca gcaagccgca tccgcaagta tatctcgact gcgcagcaaa
     4861 actgggcgtt gacccactga cctgcgtggc gctggaagac tcggtaaatg gcatgatcgc
     4921 ttctaaagca gcccgcatgc gttccatcgt cgttcctgcg ccagaagcgc aaaatgatcc
     4981 acgttttgta ttagcaaacg tcaaactctc atcgctgaca gaactcaccg caaaagacct
     5041 tctcggttaa tgaccagggg cagtgatcac gctgcccctg gttctttatc tgaatttgca
     5101 ttcaactgac ggattaatcg tcaatttaag agaaagagtt acaccgtaac cacttccgtg
     5161 cactgtataa aaatcctata ctggacgtat cgacagttta gtgagtttta tcatgacggc
     5221 ggaaggtcac cttctctttt ctattgcttg tgcggtattt gccaaaaatg ccgagctgac
     5281 gcccgtgctg gcacagggtg actggtggca tattgtccct tccgcaatcc tgacgtgttt
     5341 gttaccggac atcgatcacc caaagtcgtt tcttgggcag cgattaaaat ggatatcaaa
     5401 accgatcgcc cgcgcttttg ggcatcgtgg ttttacccac agtctgctgg cggtatttgc
     5461 gctgctggca accttttacc ttaaggttcc ggaaggctgg ttcattccgg ctgatgcgct
     5521 acaaggaatg gtgctgggtt atttgagcca catacttgcc gatatgctga cacccgccgg
     5581 tgttcccctg ctctggccat gccgctggcg tttccgcttg ccgatcctag ttccccaaaa
     5641 gggcaaccaa ctggaacgtt ttatctgcat ggcattattt gtctggtcgg tatggatgcc
     5701 ccattcatta cccgagaaca gcgctgttcg ttggtcatcg caaataatca ataccttgca
     5761 gatccagttt catcggctta ttaagcatca ggttgaatac taaaaagaca aaaatcacct
     5821 ttctggaata agcaatttca tttgaatata agagccagct cacagttctg ttaatcttgc
     5881 gccaacacta tgactgctac gcagtgatag aaataataag atcaggagaa cggggatgaa
     5941 ctttccatta attgcgaaca tcgtggtgtt cgttgtactg ctgtttgcgc tggctcagac
     6001 ccgccataaa cagtggagtc tggcgaaaaa agtgctggtg ggtctggtga tgggtgtggt
     6061 ttttggcctt gccctgcata ccatttatgg ttctgacagc caggtactta aagattctgt
     6121 acagtggttt aacatcgttg gtaacggcta tgttcaactg ctgcaaatga tcgttatgcc
     6181 gttagtcttc gcctctattc tgagcgcggt tgcccgtctg cataacgcat ctcagttagg
     6241 caaaatcagt tttctgacca tcggtacgct tttgtttacc acgctgattg cggcgctggt
     6301 cggtgtgctg gtcaccaacc tgtttggttt gacggctgaa ggtctggttc agggtggtgc
     6361 agaaactgca cgtctgaacg ccattgaaag taactatgtt ggtaaagtct ttgatctgag
     6421 cgttccgcag ctggtcttgt cctttatccc gaaaaacccg tttgccgatc ttaccggagc
     6481 caatccgacg tcaattatca gcgtggtaat ttttgccgca ttcctcggcg tagctgcatt
     6541 gaaactgctg aaggatgatg cgccgaaagg tgaacgcgtc ttagccgcta tcgataccct
     6601 acaaagctgg gtgatgaaac tggttcgcct tgtcatgcag ttgacccctt acggcgttct
     6661 ggctctaatg accaaagtgg ttgcaggttc taacttgcaa gacatcatca aactgggaag
     6721 tttcgttgtc gcgtcctacc tcggtctgct gattatgttt gcagtgcatg gcattctgct
     6781 gggcattaat ggcgtgagtc cgctgaagta cttccgtaag gtatggcctg tgctgacgtt
     6841 tgcctttacc agccgttcca gtgctgcgtc tatcccactg aatgtggaag cacaaacgcg
     6901 tcgtctgggc gttcctgaat caatcgccag tttcgccgcc tctttcggtg caaccattgg
     6961 tcagaacggc tgcgccggtt tgtatccggc aatgctggcg gtgatggttg cgcctacggt
     7021 tggcattaac ccgctggacc cgatgtggat tgcgacgctg gtcggtattg ttaccgttag
     7081 ttccgcaggc gttgccggtg tcggtggtgg tgcaactttc gctgcactga ttgtgctgcc
     7141 tgcgatgggc ctgccagtaa ccctggtggc gctgttaatc tccgttgaac cgcttatcga
     7201 catgggccgt acggcgctaa acgttagtgg ctcgatgaca gctggcacgc tgaccagcca
     7261 gtggctgaag caaaccgata aagccattct ggatagcgaa gacgacgccg aactggcaca
     7321 ccgttaattc ttatgctggc aacggtccgt tttgtatagg ggccgttgct ttacttttta
     7381 aatgttccat cgcggcgatg catactgact catatttaaa cagatcgtca gcgaaaa
//
LOCUS       DADMHM010000194         7321 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.197, whole genome shotgun sequence.
ACCESSION   DADMHM010000194 DADMHM010000000
VERSION     DADMHM010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7321)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7321)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7321
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.197"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(77..418)
                     /locus_tag="JN125_003488"
     CDS             complement(77..418)
                     /locus_tag="JN125_003488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY8873133.1"
                     /translation="MAEIKTLHLVPREGMQVSEKPSVARVRFGDGYEQRRPTGLNARL
                     KTFQAVFRVTDEATRRWLEEFLSWHGGYRAFLWRPPKHNRTVRVVCREWSVTDNARYS
                     DFSCTIEQVVN"
     gene            complement(411..3472)
                     /locus_tag="JN125_003489"
                     /pseudo
     CDS             complement(411..3472)
                     /locus_tag="JN125_003489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_304285.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
     gene            3517..3846
                     /locus_tag="JN125_003490"
     CDS             3517..3846
                     /locus_tag="JN125_003490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001325657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence hypothetical
                     protein"
                     /protein_id="HAY8873134.1"
                     /translation="MSKPRWTIEQKRQHVAAWRASGLTRQQYCELNDIPFTSLREWPQ
                     DVAKAERRANEPTVLPVHIAPPLHADVPQPVTNEPVTLFLPGGVRMCCQPSQLTDVFR
                     ALKYAQS"
     gene            3833..4225
                     /gene="tnpB"
                     /locus_tag="JN125_003491"
     CDS             3833..4225
                     /gene="tnpB"
                     /locus_tag="JN125_003491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000950651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HAY8873135.1"
                     /translation="MLSPDNVFIAIKPVDMRRGIDSLTQYIQDELRSTWHEGAAFVFV
                     NKARSRIKVLRWDKHGVWLCTRRLHKGSFRWPRANDAAWHLTPDEFNWLIAGVDWQQV
                     KGHDLTKWVWLNEPELRPENTQNTLLTQ"
     gene            4232..5833
                     /locus_tag="JN125_003492"
     CDS             4232..5833
                     /locus_tag="JN125_003492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001546148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66-like element ISEc49 family transposase"
                     /protein_id="HAY8873136.1"
                     /translation="MNIRIWSGILPCMDISALNTTNDIEKLRAMALAMVQEVMSENAE
                     KERELLEKSRRIQLLEEMLKLVRQQRFGKKCETLAGMQRSLFEEDVDADIAALTAHLD
                     KLLPQSPEEDEKASRSRPIRKPLPVHLPRVEKIIQPDTDHCPECDEPLHYIRDAVSEK
                     LEYIPAHFVVNRYVRPQYSCPCCQKVFSGEMPAHILPKSAVEPSVIAQVIINKYGDHL
                     PLYRQQQVFARSDVGLPVSSMADMVGAAGAALSPLAALLHRELINRPVVHADETTLKI
                     LNTKKGGKSCSGYLWAYVSGERTGPSVVCFDCRTGRSHEYPENWLQGWGGTLVVDGHK
                     AYRTLANKVPEITLAGCWAHARRGFADLYKISKDPRAAIAVKKIAGLYRLEKKISSRP
                     VEKIRQWRQRYARPILEELWSWLEEQEPQCSPGKALHKAIAYALSHRVELSRFLEDGA
                     VPLDNNVCERAIKNVVLGRKSWLFAGSQMAGERAAQIMSLLETAKRNGLEPHAWLTDV
                     LMRLPEWPEERLAELLPLEGFTFSG"
     gene            complement(5968..6195)
                     /locus_tag="JN125_003493"
     CDS             complement(5968..6195)
                     /locus_tag="JN125_003493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000224021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873137.1"
                     /translation="MATLRELIIKIVSFRGTHIDAFFRRASSAAHTNARGLITVDLFC
                     CTEAIARQVPEAGSEVLTRGLIAGDDVLTRE"
     gene            complement(6243..6452)
                     /locus_tag="JN125_003494"
     CDS             complement(6243..6452)
                     /locus_tag="JN125_003494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310268.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4035 domain-containing protein"
                     /protein_id="HAY8873138.1"
                     /translation="MWMEFDRISPLGDERGDIRNAQIVKAVFGAQGMNVALKDVMLCW
                     GEDEDKPEVDPFAALEDALSFAAQS"
     gene            complement(6548..6922)
                     /locus_tag="JN125_003495"
     CDS             complement(6548..6922)
                     /locus_tag="JN125_003495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY8873139.1"
                     /translation="MKKDLKTLALARLSGFRHKTVKVPEWGNVSVVLREPSAEAWYLW
                     QEVLNGDGEDDDTLSVVAKTRRNLEADVTLFCDVLCDTDLQRVFTPDDREQVLAVYGP
                     VHARLLRQALELIADAESARKK"
     gene            complement(6937..>7321)
                     /locus_tag="JN125_003496"
     CDS             complement(6937..>7321)
                     /locus_tag="JN125_003496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY8873140.1"
                     /translation="LAEVRQHTWSSGTNGVVAATFSLRLKGKPVSFVVPLAFVKNLDK
                     TLTVNTGALLTMSVSANGGMPPYKYAWKKDGQPVDGQTTDTFSKPGAQSADAGKYTCV
                     VTDSAEKAQSVTSVECTVTVSAAAG"
BASE COUNT         1586 a         2285 c         1793 g         1657 t
ORIGIN      
        1 atttcccaga gtaccacccg cggtgactgc tctgatttaa ccgactcgct cagactttct
       61 tcgtgaatat cctgcatcag ttcaccacct gctcaatcgt acaactgaaa tcactgtacc
      121 tggcgttatc tgtgacgctc cactcccggc ataccaccct caccgtccgg ttatgtttcg
      181 gcggtcgcca caaaaaggca cggtaaccac catgccacga taaaaactct tccagccatc
      241 gccgggtcgc ctcatccgtc acccggaaca ccgcctgaaa cgtcttcagt cgggcattaa
      301 gtcccgtcgg gcggcgctgt tcataaccgt caccaaaccg taccctcgcc accgacggtt
      361 tctcactcac ctgcatccct tcacgcggga ccagatgcag cgtttttatc tcagccactc
      421 agcattcctc cgtcacgtcg catggacagc atcaccgcct gcacccgctg gtcaatcagt
      481 tgcacaaggc tgcccgcagc ttccggccct atctggccat tagtcccgtc attctgaatg
      541 gcgatatggt agaccgggga atacaccaga cctgcactgc cgttcatact gcccaccgct
      601 cgcacaccca gcgagccatc cgccgcccgg gtcaggggca taatggcttc aggaccggcc
      661 tcccccatca gtcccgcccc ttttgcaaag gcaaagtacg tgggcgtatc cacaatactg
      721 ttgctgtacg cactcaggtt tgccgaggta tacacaccgc cttttgcatt ggccaccgca
      781 ccgcccagcc agctaccaat actgccgata aatcctcccg ctccggacat actgtttgcc
      841 gccgtcttga tcccgttgac aatcgcggca ttcataagaa cttttgatat ttcctgcagc
      901 actgatgagg cccagctgcg ccattccact ttatttccgt tcagcatctc cgtgatgtta
      961 ttcaccatcc ctgagatacc ctccgtcgca agctgtactg cctgtgaggc gtaatcggac
     1021 gcattatcca cccagttact gaatccctcc tgcagccctt tctgccagtc cgcacgctgc
     1081 acatccgatt cggcataaaa ggcttcctgc tctttcagac gttcactcag atactgcgcg
     1141 ttctgtgcca gagcctgtct gtaaaaatcc tcactgatat ccccggtctg atactgagac
     1201 tgaaggtccg catccttctg gcggaaactg tcgcggatct gctgcaactc ccgcatgcgt
     1261 tcacggagcc gctctccctg cccgtacccc agcagttccg cttcatttga tgcacgcgca
     1321 gccacattat cattcttcag ggtctcttcc cgggaccgca actgctcccg gattttttgc
     1381 tggtcaatca gggccgcatt gcgcagcagt tcctgcttct gcatctccgt cagggttttc
     1441 agttcgccct gcgcagtctg gtatttcagc ttcgccagct ctgtattctg ccccgccagt
     1501 gccagttgct ctttctgctg cttcagcagc cgggaaaaac tgtcttccgc tttttccgtc
     1561 tctgattttc caccccggga tttgggttta ttcgcctcgt tattgcgcca ggcttccagg
     1621 gcattactga tataacgttg tctcgcctcc tgatacggat cacccacaaa accgaggtca
     1681 tccgccgcat accccagtcg gacacgctct gtttttgtca gggcactctg ctgtttatca
     1741 tccagagtgg cctgtggcag ccgtaacggc acattcacca gtccctgccg ctgctgaagc
     1801 agttcattac ccagccccag cagacggttg aattccgtat gctgaccgtt cataaccagc
     1861 atggactggt acaccttatt ctgctctgcc gcctgctgac gaattaacgc cacacgacgg
     1921 tcgtccagcc cgggttcgcc agaacatact gatattctgc gattttttcc tgcagggatt
     1981 tcacccgact agcctgttca tcaatcagcc ggttctgctc tgtcagcgcc gcccgtgttc
     2041 gtccttcatt atctgaggct tcaggcaaag acattgacgg cgttttatgc gcgatttcat
     2101 ctatcgtcag tgcatactgg cgcgcagact cccaggcctg ctcctgattc tggtacagcg
     2161 tgtaccatgc tgcagccccc agcatcacca gtccgggtac gccaccaacc agccccagcg
     2221 caccgctcat cagacgtgag cccaccgccg ttgtactgtt cagcgcattc tgggcggcgc
     2281 ttctggcagc aatatttctg ttcaggcgtt cctgtgtggc cgccagacgg gcctctgcag
     2341 caatctgcat ctccgtcccg cgggctgccg ccacggcctg ctgagcacgg tacacggctg
     2401 cccttgcccg cgccgtggca atctgcgttc ccctgaactg tgcttccgcc agtgcaactt
     2461 cattacgtgc agccgtcaca agtcctgccg tggcagacat cgctccggag gccatattgc
     2521 caaagtaccg ggcaaccccg acggcaacca gcgcccccac agctgttgcc acattatcaa
     2581 tctgtccggc aacaccgttc agcacgccgg agagagtttt tgtcaccccg caggcctcat
     2641 tcacttcgcc cacccaggcc ataaaggcgt tttccacctt cgtgatacta ccggaaaccg
     2701 tttccggcat ggccgcatat tcatcacgta atatccccag ctggctgatt aacgcaggga
     2761 ccactttatc cgctgtcagt tttccgtcat ccgccattgc cttcagatct ttacgggcca
     2821 cacccatccc cgcagcaagc gcgcggatca cccggtcgcc attttcgtta acagcattaa
     2881 attcttcgcc acgcagtaca ccctgtgcca gtgcctggct gagctgggtg atcaccgaac
     2941 cggattccgc aactccagcc cctgacagtt tcagtcctgt cgaaatggcc tccgtcacct
     3001 tcagcacatc atcagcactg taaccatatt cacgcatcga ggcagccgaa cgggcaaaca
     3061 gggccgcatt atccgaaaac gcggtacctg ttcgctgact gatatccatc agcactttct
     3121 gtgatgacga gaattcatcc gatgactgag atgcctgttt cagacgggca ttcacggaac
     3181 cccactcatc ggccagcgaa atcaggtgtc cggtggcaaa ggcaccggca aatgcgccag
     3241 ccattccgac agcagaaccg cgaatttccg tcaactgact gttcagttct gcaagggcgc
     3301 ggcgctgttc ccgtgcggca gcagcggcat gacgtccgcc attctgtagg gtccggtaat
     3361 attcactgcc catacgggac gcccgctgga tctccgactg gaatgactgt gaatttgccg
     3421 aaattttgag tgtcgttacg gggaagtcat cttcataggg atcttcggtc agttagtatt
     3481 accgacatcc attcaccaac ttaccggaga taatcgatgt caaaaccccg atggaccatt
     3541 gaacagaaaa ggcagcacgt tgctgcctgg cgcgccagtg gtcttacacg tcagcaatac
     3601 tgtgaactca acgatattcc cttcacatca cttcgcgaat ggccgcagga tgtcgcaaaa
     3661 gctgaacgcc gggcaaatga accgaccgtt cttcccgttc atattgcgcc accactgcat
     3721 gctgatgtac cacagcccgt cacgaatgag ccagtcacgc tcttccttcc cggtggagta
     3781 cggatgtgct gtcagccgtc acaacttacc gatgtcttca gggcactcaa atatgctcag
     3841 tcctgataat gtcttcatcg caattaaacc tgttgacatg cgccggggca tcgactcact
     3901 gacgcagtat atacaggatg aactccggtc gacatggcat gagggagccg ccttcgtctt
     3961 tgttaacaaa gcccgttcgc gtatcaaagt tctccggtgg gataaacacg gggtgtggtt
     4021 gtgtacccgc cgtctgcaca aaggcagctt ccgctggcca cgtgcaaatg acgctgcctg
     4081 gcacctcact cccgacgagt ttaactggct gattgccggt gttgactggc agcaggttaa
     4141 gggacatgac ctgacgaaat gggtctggct gaatgaacct gaactgcgcc ctgaaaacac
     4201 gcaaaataca ctgctaactc agtgaaaaat aatgaatatc cgtatctgga gtggtatact
     4261 cccctgtatg gatatctccg ctctcaacac cacgaatgac atcgaaaaac tgcgtgctat
     4321 ggcacttgcc atggtacaag aagtcatgtc ggagaatgcc gaaaaagagc gggaattact
     4381 ggagaaaagc cggcgcatcc agcttctgga agaaatgctg aaactggttc gtcaacagcg
     4441 cttcggaaaa aaatgtgaaa cgctggctgg tatgcaacgc tccctattcg aagaggatgt
     4501 tgatgccgat atcgccgcgc ttaccgcaca tctggataaa ctgctcccgc aatcccctga
     4561 agaagatgaa aaagcgtccc gttcacgccc gatacgcaaa cccttaccgg ttcatcttcc
     4621 acgggtggaa aaaattatcc agccggacac tgaccattgc cctgaatgtg acgagccgct
     4681 gcactatatc cgcgatgcgg tgagtgaaaa gctggagtat attcccgctc actttgtggt
     4741 gaaccgttat gtccgtccgc aatacagttg tccctgttgc cagaaggtgt tcagcggtga
     4801 aatgccggca catatcctcc cgaaaagtgc cgttgagcca tcagtcatcg cacaggtgat
     4861 catcaataaa tacggtgacc acctgcctct gtatcgccag caacaggtct ttgcccgttc
     4921 agatgtcggg ctgcccgtca gttcgatggc tgacatggtt ggcgcggcgg gtgccgcatt
     4981 atctcccctg gcggcgttac tccatcgcga gttgataaac cgtccggtgg tgcatgcaga
     5041 tgagactacc ctgaagatcc tgaacacgaa gaaaggcggt aaatcctgct ccggttatct
     5101 gtgggcatac gtcagtggag aaaggacggg accgtcagtt gtgtgcttcg actgccggac
     5161 cggacgtagc catgagtatc ctgaaaactg gcttcagggc tggggcggga cgctggttgt
     5221 cgacggacat aaagcttacc ggactctggc aaacaaagtg ccggagatca cgctggccgg
     5281 atgctgggcc catgcccgca ggggcttcgc cgacctgtat aaaatcagta aagatccacg
     5341 ggctgccata gccgtgaaga aaatcgcggg gttgtaccgt cttgagaaga agatcagtag
     5401 ccgccccgtg gaaaaaatcc gccagtggcg acagcgttat gcccgtccga tactggaaga
     5461 actgtggtca tggcttgaag agcaggaacc gcaatgttct ccgggaaagg cattacacaa
     5521 agccattgcc tatgcgctgt ctcatcgcgt ggaactgagc cgcttcctgg aagatggtgc
     5581 ggtgccgctg gataataatg tgtgtgaacg ggccatcaaa aacgtggttc tgggcagaaa
     5641 atcgtggctg ttcgccggtt cgcagatggc gggagaacgc gccgcgcaaa taatgagctt
     5701 gctggaaacc gcgaaacgca acggtctgga gccgcatgcc tggttgacag acgtcctgat
     5761 gcgtctgccg gagtggccgg aggagcgact ggcagagttg ctgcctcttg agggatttac
     5821 cttctccggg tgagtgatac ctgccgtcag gtgttcgtgc accgggccat aacctgcagt
     5881 cgggagttga actcctgacg gcaggaaatg agccagacca gcaaccacgc gggctgacag
     5941 cgaataagaa cctgaatcag cccggagtca ttcccgggtc agtacatcat cacctgcaat
     6001 taatccccga gtcagtactt cagagcccgc ctccggtacc tgcctggcga tcgcctctgt
     6061 gcaacaaaat aaatcaaccg ttatcaaacc acgagcgttc gtatgcgccg ccgatgacgc
     6121 gcgcctgaaa aatgcgtcaa tatgagttcc ccggaagctt acaattttga taatcagttc
     6181 acgtaacgtc gccattcacc tttctccggg cgtaaaaaaa ccgcctcagc ggttctcatc
     6241 attcatgact gtgctgcaaa gctcagcgcg tcttccagcg ccgcaaacgg atccacctcc
     6301 ggcttatcct catcctcgcc ccagcagagc atgacgtcct tcagtgcaac attcatcccc
     6361 tgtgccccga aaaccgcttt cacgatctgt gcattacgga tatccccgcg ctcatcaccc
     6421 agcggggata tcctgtcgaa ctccatccac atcatcgcct cgctcgcact caggctgtgg
     6481 cgcagttcgg ataaggtgcg ccccagacgg agcgcaagtc gcatcagaaa gcgaatttcc
     6541 gggcgggcta cttttttctg gccgactctg catcagcgat cagttccagt gcctgacgca
     6601 gcaaccgggc atgtaccgga ccatagacgg ccagcacctg ctcacggtcg tccggagtga
     6661 acacccgctg caggtccgta tcacacagga catcgcagaa cagcgtcaca tccgcttcca
     6721 ggttacggcg ggttttcgcc accaccgaca gggtatcgtc atcctctcca tcaccattga
     6781 gcacttcctg ccacagatac caggcctctg ccgaaggctc ccgcagcacc acgctgacat
     6841 tcccccattc cggcaccttc accgttttat gacgaaaccc tgacagtctg gccagcgcca
     6901 gcgttttcag atcctttttc atgatgaccc atccccttat ccggcagctg cgctcactgt
     6961 cacggtgcat tcaacagacg tcacactctg tgctttctct gccgaatcgg tcaccacgca
     7021 ggtatatttc cccgcatcag cggactgcgc acctggctta ctgaaggtgt ctgtcgtctg
     7081 cccgtcaacc ggctgaccat ccttcttcca ggcgtattta tacggcggca ttcccccgtt
     7141 ggcactgact gacattgtca gcagcgcacc ggtattcacg gtaagtgtct tatccagatt
     7201 tttcacaaac gccagcggta ccacaaagga caccggtttg cctttcagac gcagtgagaa
     7261 cgttgcagcc accacaccgt tggtaccgga tgaccaggtg tgctgacgca cttccgccag
     7321 g
//
LOCUS       DADMHM010000195         7253 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.198, whole genome shotgun sequence.
ACCESSION   DADMHM010000195 DADMHM010000000
VERSION     DADMHM010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7253)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7253)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7253
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.198"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..260)
                     /locus_tag="JN125_003497"
     CDS             complement(<1..260)
                     /locus_tag="JN125_003497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000741720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HAY8873141.1"
                     /translation="MAAVILRKVEKIYDNGFKPVHGIDLDINDGEFMVFVGPSGCAKS
                     TTLRMIAGLEDVSGGEIYISDRLVNTLPPKDRSIAMVFQNYAL"
     gene            complement(343..831)
                     /locus_tag="JN125_003498"
     CDS             complement(343..831)
                     /locus_tag="JN125_003498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001461083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosidase"
                     /protein_id="HAY8873142.1"
                     /translation="MKNKLLIAAVLTGLLSGCVDGNSPSGSQEGVVKADPRYSECNLP
                     DVNERGPIAAGLYISGTLPEGYWLMKPERKMHYKGDGIYQLIYSEKAGAVTMQFATMN
                     WNPQFTVTGLELPLNQAKTLKKGGMDKNTKVVIPADGKYVWTIQIGPDKKAIAAMVAP
                     CK"
     gene            complement(982..1938)
                     /locus_tag="JN125_003499"
     CDS             complement(982..1938)
                     /locus_tag="JN125_003499"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000490374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HAY8873143.1"
                     /translation="MFSALDIKTLMQGTLYGDPSLRVDTIRPIHSPLVGGLSIVMTPG
                     DLLHIPTTGVDIIIGPEEIISSNTKAKIVVDYLNVNNLNKVLRYFKVHKYRLFEQENT
                     STIPDVYIGKHCQIGMNCHFMPGVKIMNCVTIGDNVAIHANTVIKEGTIIGNDVIIDS
                     NNSIGNYSFEYMSDERDSYVRVDSIGRVIIGDYVEIGCNNTIDRGTLGDTIIGQGTRI
                     DNQVQIGRDCIIGNKCLIVSQCGFSGHVVLGDHVITHGQVGIAGHISIGSYSVIKAKS
                     GVSHSCPEKSDLFGYPAKNTREYNKNLAVLNKLTKQHGVYKQ"
     gene            complement(1957..2994)
                     /locus_tag="JN125_003500"
                     /pseudo
     CDS             complement(1957..2994)
                     /locus_tag="JN125_003500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000242972.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
     gene            3266..4498
                     /locus_tag="JN125_003501"
     CDS             3266..4498
                     /locus_tag="JN125_003501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000777725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY8873144.1"
                     /translation="MKLSNIVTVIILAISSTLTPQAMAEKLIPETDAELLVWSDATSV
                     EYMKYAAKEFNKDFGYKVKFTFRNIAPMDAASRIMQDGGTTRVADVAEIEHDTLGRLV
                     VAGGVMENMVSAERIKKTFIPGAVSAATYNNISYGFPVSFATLALFYNKDLLNTAPKT
                     FEEINTFSEKFNNSSEHKYALLWDVQNYYVSRMFITLYGANEFGKIGNDPKALGIASS
                     EAKKGLETMKRLKKANPSNPLDMGNPQVLRGLFNEGKVAAVIDGPWSIQGYIDSGINF
                     GVTRIPTLDGHQPRTFSTVRLAVVSSFTAYPHAAELFADYLTTDKMLMKRYEMTNLIP
                     PIDSLMNKISQTGSEAIKAIIAQANYSDAMPSIPEMSYLWSPMTNAILATWVENKTPD
                     EVLNHAQTIIEEQLSLQE"
     gene            4522..5790
                     /locus_tag="JN125_003502"
     CDS             4522..5790
                     /locus_tag="JN125_003502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001377483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HAY8873145.1"
                     /translation="MKSAPVLPISCLIMGGTQLSRHYYVKGGIFFAIQVCFLLYLSDI
                     VHTLIGLFTLGDVAQIRKGLTVIQGDNSIFMLVEGVIATIIVGLFATIYILNIKDARN
                     SSYCHLTFKQQLYKLYEDKFAFIVLTPAFLASIAFIVLPIVITVLVSFTNYAAPNHIP
                     PKNLVDWVGIKNFIMLFKFKIWSDTFLGVALWTFIWAICATVFTFSFGFILALALAKK
                     NIRFAKVWRLIFILPYAIPTFVTLLILRLLLNGIGPVNSFLNSIGMNSVDFLSVPLNA
                     KITVIAVCVWVGAPYFMLLIAGALTNISRDLYEASEVDGTTKWQQFKEITLPMVLHQV
                     ASTLVMTFAYNFNNFGAIYLLTEGGPTNPEYRFAGHTDIFITWIYKLTLNFQQYHIAS
                     VISIIIFIFLSVIAIWQFRRMKSFKDDVGM"
     gene            5793..6624
                     /locus_tag="JN125_003503"
                     /pseudo
     CDS             5793..6624
                     /locus_tag="JN125_003503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008076437.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
     gene            6642..>7253
                     /locus_tag="JN125_003504"
     CDS             6642..>7253
                     /locus_tag="JN125_003504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017791414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glycosidase"
                     /protein_id="HAY8873146.1"
                     /translation="MITVSSLKHSAKSEDSYAYDNETLYVRLRTLRGEVDKVILWIGD
                     PYNWAEGGLDGGNMAGTEAFGWIGGNEIEMEQEAVTEFHDHWFAVFKPQKRRCRYGFI
                     LFGKEGEKFLFGEKRCVDISSPECEERELSRLNNFFCFPYLNKIDVLNTPSWVKNTVW
                     YQIFPDRFCNGRPEISPEGVEPWGSTPTSFNFMGGDLWGVIDKL"
BASE COUNT         2095 a         1367 c         1419 g         2372 t
ORIGIN      
        1 agcgcatagt tctggaacac cattgcaatg ctgcgatctt taggcggaag ggtattaaca
       61 aggcggtcgc taatgtaaat ttcaccacct gatacgtctt caagacctgc aatcatgcgt
      121 aatgtagttg atttggcaca cccagatggt ccaacaaaaa ccatgaattc accatcgttt
      181 atatcgagat caatgccgtg aacaggtttg aatccattgt cataaatttt ttcaactttg
      241 cgtagaatta ccgcggccat aatctgctct cattaacaag aattttggaa tactgatact
      301 ccactattca acgaatgttg aatagtggag tgctaaaaat aactatttac atggtgctac
      361 catggcggct attgcctttt tatcaggacc aatttgaatc gtccaaacat actttccatc
      421 ggcaggaatg acgacttttg tatttttatc catgcctcct ttcttgagtg ttttagcctg
      481 atttaatggc aattcaagac ctgttacagt gaactgcgga ttccagttca tagtcgcaaa
      541 ttgcattgtt accgcacctg ctttttcaga ataaataagc tgataaatac catctccctt
      601 ataatgcatt ttacgctctg gcttcattaa ccaatagcct tccgggaggg ttccggaaat
      661 gtaaagaccc gcagcaattg gccctctttc atttacatca gggaggttac attctgaata
      721 gcgaggatcc gctttcacga caccttcctg actgccagag ggtgaattgc catcaacgca
      781 tcctgaaaga agaccagtca acacagccgc aataagcaat ttatttttca tttaaactct
      841 caataaaagt agtatagctt agttaagcta tttctatgtc agtgttaatg ttaatgttaa
      901 tgttaatgtt aatgttaatg ttaatgttaa tgttaatgtt aatgttaatg ttaatgtata
      961 taaataatac ttctcaacga ctcactgttt atatacacca tgctgtttag ttagtttatt
     1021 aaggacagcg agatttttgt tgtattctcg cgtatttttg gcagggtaac caaaaaggtc
     1081 actcttttca ggacaagaat ggcttacacc tgatttagcc ttaattaccg aataactacc
     1141 aattgatatg tgaccggcga ttccgacttg accatgtgta ataacatggt cgcctaaaac
     1201 tacgtgtcct gaaaaaccgc attgtgaaac aatcaggcat ttattaccga ttatgcagtc
     1261 acgtccaatc tgcacttgat tatcaatacg agtgccttgg cctataatcg tatctccaag
     1321 tgtccctcgg tcaatggtgt tgttacaacc gatttcaaca taatcaccta tgataactct
     1381 accgatgcta tcaactcgga catatgaatc acgttcatcc gacatatatt caaaactata
     1441 attaccgatg gagttattag aatctatgat aacgtcattg ccaataatag taccttcttt
     1501 aatcactgta ttcgcatgaa tggcaacatt atcacctatg gtcacacagt tcataatttt
     1561 aacaccaggc ataaaatggc agttcatacc tatctggcag tgtttaccaa tgtatacatc
     1621 aggtatcgtt gaagtgtttt cttgctcaaa caaacgatac ttatgtacct taaaatatct
     1681 taaaactttg ttaagattat tcacgttcag gtaatcgact acaatctttg ccttagtatt
     1741 agaactaatg atctcttccg gtccgataat tatatccaca ccagtcgttg gtatatgcaa
     1801 caaatctcca ggtgtcataa caatcgagag tccaccaact aaaggactat ggattggccg
     1861 aatggtatca accctgagtg atggatcacc atataaagtt ccttgcatca acgttttaat
     1921 atctagtgcg ctgaacatag gtttccctct gtttaatcaa aagcgataga aagcatgaac
     1981 ataaatatta tcctgattga gcacattata tttttcttca tctcttggat cataaaagtt
     2041 tttgtgctct ttttcccagg catgtttata ttcaatcttg gctatccagt cgtcacctat
     2101 gttttgttca taacctagag tggcttttcg aattgttttg aaataggttc tgtttgcatt
     2161 gtattgcaaa ctatctgcgt tttctgtttt cccgtgtccg aagcgggtgc gtagatacag
     2221 attacctgcg ttttcaaaag catatttgat aattggctcg tagtaagttt cggtataaat
     2281 actacgatca tttattttac cgtgattaaa ttcatcgtta tgctttttct ggtagaaaaa
     2341 ttcaatacca aactcccatg caccaaaacg tttataggac tgaaatagta tactttgacc
     2401 ttcttcttcg cgtacgcccc aggagctctt atcatttcga ctgtataagt attcaacgtt
     2461 tgaataaaaa cctgcgttcc agtcagagtt aaagtacgtc aacgtagggc gaaaactgtt
     2521 gtcaacagtt acagtatgca agcctgtgac ataagggcta tctatattac cgtcggtata
     2581 catcaggtcg tataccagac tgaagtcgaa accgttacca atagtgaacg ttttgtttag
     2641 tgatatatag ttttgcagac ttgtttcatt ttcgtgatag cctttttctt cttgtcggcg
     2701 atcgatagac ttaaggccat agattgctgc aaattgccaa ttaggttggc tgaaataggc
     2761 ctggaaaatc tcgtgtgttt tagtatattc ctttactgtt ttacctaaat agttatcagt
     2821 gcttttggtc tcatattaaa atgtagtacc aacatgtcca ttaaagcccg cttgttcttc
     2881 tgaccagtca gtgtcggagg taaagccgcg atcgtttgcc gcaaaggctc ctgttgagcc
     2941 taaaatgact gttgcaattg aagccgataa gacattcttt tttattaaaa ccataaatga
     3001 gttccttcca aaatatcaat ttaagatatg atttctgtta ttccatatag tcgtacctca
     3061 tgtactccta aacactctgc ggcaataaaa tatttttttc tcaacaaatt actgcaaatg
     3121 ggatatgcat cactatttgc agttattcat cattaaaatc ttatttgaca gttgattggc
     3181 cttgatttgt gttgataatg gcgtgaatgc ttatgtagtc gtacatcata tactacttaa
     3241 agatgttatt catgaggtaa atataatgaa gctttcaaat atcgtcacag ttataattct
     3301 tgcaatttcc agtacgctaa caccccaggc gatggcagaa aaattaattc ctgaaactga
     3361 tgctgagttg ttagtttggt ctgatgccac aagcgtggaa tatatgaaat atgcagcaaa
     3421 ggaattcaat aaagattttg gctacaaggt aaagtttaca tttcgcaata tagcgccaat
     3481 ggatgcagca tcaagaatta tgcaggatgg gggtacgact cgtgtagctg atgtagctga
     3541 aattgaacat gataccctgg ggcggttagt cgttgctggc ggggttatgg aaaacatggt
     3601 ctcagctgag cggattaaaa aaacatttat tccaggcgca gtatcggcag ctacatataa
     3661 taacatcagc tatggttttc ctgtaagttt cgcaacgctg gcgcttttct ataataagga
     3721 tttgttaaac accgcaccaa aaacattcga agaaatcaat actttcagtg aaaagtttaa
     3781 taattcatcc gagcataaat atgctctgct atgggatgta caaaattatt atgtttcacg
     3841 tatgtttatt accttgtatg gtgccaacga attcggtaaa atcggtaacg atcctaaagc
     3901 tctaggcatc gcttcatctg aagcgaagaa agggctagag acgatgaaac gcttaaagaa
     3961 agcgaatccc tctaatcctc ttgatatggg taatccacaa gttctaagag gtctgtttaa
     4021 tgaaggtaaa gttgctgctg taatcgacgg accttggtcc atacaaggtt acattgacag
     4081 cggaatcaat tttggcgtga cacgcatccc aacattagat ggtcatcagc ctcgcacatt
     4141 ttcaacagta cggctggccg ttgtaagctc atttaccgca tatcctcatg ccgctgaatt
     4201 attcgctgac tacctgacaa cggataagat gttgatgaag cgttatgaaa tgacgaatct
     4261 catcccacca atcgattcac ttatgaacaa aattagccag acaggtagtg aagctataaa
     4321 agcaattatt gctcaagcta attattctga cgcaatgcca tcaataccgg aaatgtctta
     4381 tttatggtct ccaatgacta atgctatttt ggctacctgg gttgagaata aaacaccgga
     4441 tgaagtttta aatcatgcac aaacaattat tgaagaacaa ctttcgcttc aggagtaatt
     4501 gtgaatacac aacaactgaa aatgaagagt gcacctgtgc tacctatttc ctgtttgatt
     4561 atgggcggga ctcagttatc acgtcattat tatgtgaaag gcgggatatt ctttgcaata
     4621 caagtatgct ttttgcttta tctttccgat attgtgcata cattaatagg tttgttcaca
     4681 ttaggtgatg tcgcgcaaat tcgaaaaggg ctgactgtta ttcagggtga caattctata
     4741 tttatgcttg tagagggcgt gatagcgacc attattgttg gcttattcgc cactatttac
     4801 atccttaata ttaaagatgc gcggaactca tcttattgcc atctgacttt taaacaacag
     4861 ttatataagc tctatgagga taaatttgca tttatagtcc taacgcccgc atttttagcg
     4921 agtatagcat tcattgtttt acctattgta attacagttc ttgtatcgtt tacaaactat
     4981 gctgcgccaa atcacatccc accaaagaac ctggttgatt gggttgggat taaaaatttc
     5041 ataatgttgt ttaaatttaa aatatggtct gatacgtttc taggtgtcgc tctctggaca
     5101 tttatttggg caatttgcgc gacggttttt accttcagtt ttggctttat tctggcttta
     5161 gcactggcta aaaaaaatat acgtttcgca aaagtctggc gattgatatt tatactgcca
     5221 tatgccatac ccacatttgt aacgttactt attttgcgtc ttcttttaaa tggaattggt
     5281 ccggttaact cgtttctgaa cagtatcgga atgaattcag ttgattttct gtcggttcca
     5341 ttaaatgcaa aaataacagt aattgccgtt tgtgtttggg taggggcacc gtattttatg
     5401 ctattgatcg cgggtgcatt aacaaacata tcccgagatt tgtatgaggc tagtgaggtc
     5461 gatggcacaa ctaaatggca acagtttaag gaaattacat tgccaatggt gttacatcag
     5521 gttgcgtcaa ctctggtaat gacatttgca tataatttca ataattttgg tgcaatttat
     5581 cttctgactg aaggtggtcc gactaatccg gaatacagat tcgctgggca taccgatatt
     5641 tttattacct ggatttataa actcacattg aatttccagc aatatcatat agcttctgta
     5701 atctccatca taatatttat cttcttatcg gttatagcaa tatggcaatt cagacggatg
     5761 aaatcattta aagatgatgt agggatgtga caatggataa atttttacgt aaaatatcaa
     5821 cgctcttagt ttatcttttt ttaatctgca actctattct tgtgcttggg ccagtgatat
     5881 ggacgataat ggcatctttt aaaaagggaa taatctattt agttcaacat ttagtggcat
     5941 cgagtttaca tttgaccact acataacgtt gttcacggat acgccatata tgcagtggta
     6001 tttgaacact ttcattcttg ctaccgctaa catgttaatt tcactgttcg ttgtgatgat
     6061 gaccgcctac gttttttcaa ggtatcgatt tcgtggaaag cgtaatacgt taatgagtat
     6121 tcttgtattg caaatgtttc ctgcatttta tcaatgactg ccatttatat cctgctatca
     6181 aaggccaatt tgatagacac atatactggg ttgcttctgg tttatgtaac cggttcattg
     6241 cccttcatga cgtggttggt aaaaggttat tttgatgcta ttctaacttc tttggatgag
     6301 gccgataaaa tagatggagc agggcatctg actattttta ttcagataat attgccattg
     6361 gctaagccga ttctcgtttt cattggatta gtttcgttca ctggaccatg gatggacttc
     6421 attttgccaa cgttggtgct tcgtagtgag gataaaatga ccctggcgat tggcattttt
     6481 agttggattg cttctaattc agcagagaat tatacgcttt ttgctgctgg ggcgctttta
     6541 gttgcagtac ctatcacatt gttatttgta ttcacacaga agcatataac tactggactt
     6601 gttagcggtg ccgttaagga ataatttagg gattagtatt tatgattaca gttagttcgt
     6661 taaaacactc agcaaaaagt gaagatagct atgcctatga taacgaaact ttgtatgtac
     6721 ggttacgcac attaagagga gaagttgata aagttattct ctggataggc gatccatata
     6781 attgggctga aggtggtctt gacggcggta acatggccgg gacagaagcg ttcggctgga
     6841 ttggcggcaa cgagatcgag atggaacaag aagctgtcac cgaatttcat gatcactggt
     6901 ttgcagtgtt caaacctcaa aaacgccgtt gccgttacgg ttttatactt tttgggaaag
     6961 agggagagaa gtttcttttt ggtgagaaaa ggtgtgttga tatcagttca ccggagtgcg
     7021 aagaacgaga gttaagccgc ttaaataact ttttttgctt cccttatctt aataaaattg
     7081 acgttctaaa taccccctcc tgggtaaaaa atacggtatg gtaccaaatt tttccagacc
     7141 gtttctgtaa cggcagacct gaaatatccc cagaaggggt agaaccgtgg ggcagtacac
     7201 cgacttcatt caactttatg ggtggggatc tgtggggggt tattgataaa ctc
//
LOCUS       DADMHM010000196         7246 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.199, whole genome shotgun sequence.
ACCESSION   DADMHM010000196 DADMHM010000000
VERSION     DADMHM010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7246)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7246)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7246
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.199"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            48..1481
                     /gene="amn"
                     /locus_tag="JN125_003505"
     CDS             48..1481
                     /gene="amn"
                     /locus_tag="JN125_003505"
                     /EC_number="3.2.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP nucleosidase"
                     /protein_id="HAY8873147.1"
                     /translation="MHPAQALDKLDALYEQSVVALRNAIGNYITSGELPDENARKQGL
                     FVYPSLTVTWDGSTTNPPKTRAFGRFTHAGSYTTTITRPTLFRSYLNEQLTLLYQDYG
                     AHISVQPSQHEIPYPYVIDGSELTLDRSMSAGLTRYFPTTELAQIGDETADGIYHPTE
                     FSPLSHFDARRVDFSLARLRHYTGTPVEHFQPFVLFTNYTRYVDEFVRWGCSQILDPD
                     SPYIALSCAGGNWITAETEAPEEAISDLAWKKHQMPAWHLITADGQGITLVNIGIGPS
                     NAKTICDHLAVLRPDVWLMIGHCGGLRESQAIGDYVLAHAYLRDDHVLDAVLPPDIPI
                     PSIAEVQRALYDATKLVSGRPGEEVKQRLRTGTVVTTDDRNWELRYSASALRFNLSRA
                     VAIDMESATIAAQGYRFRVPYGTLLCVSDKPLHGEIKLPGQANRFYEGAISEHLQIGI
                     RAIDLLRAEGDRLHSRKLRTFNEPPFR"
     gene            1824..2540
                     /locus_tag="JN125_003506"
     CDS             1824..2540
                     /locus_tag="JN125_003506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HAY8873148.1"
                     /translation="MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELN
                     TSLKFVIERAKQAQVPKHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSN
                     VNRTIANVRTIFNKKGGNIGAAGSVSYMFDNTGVIVFKGSDPDHIFEILLEAEVDVRD
                     VTEEEGNIVIYTEPTDLHKGIAALKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGL
                     VDALEDDDDVQKVYHNVANL"
     gene            complement(2994..3069)
                     /locus_tag="JN125_003507"
     tRNA            complement(2994..3069)
                     /locus_tag="JN125_003507"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3034..3036),aa:Asn,seq:gtt)
     gene            complement(3170..4813)
                     /gene="yeeO"
                     /locus_tag="JN125_003508"
                     /pseudo
     CDS             complement(3170..4813)
                     /gene="yeeO"
                     /locus_tag="JN125_003508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416491.3"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="toxic metabolite efflux MATE transporter YeeO"
     gene            4818..4893
                     /locus_tag="JN125_003509"
     tRNA            4818..4893
                     /locus_tag="JN125_003509"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4851..4853,aa:Asn,seq:gtt)
     gene            5055..6317
                     /locus_tag="JN125_003510"
     CDS             5055..6317
                     /locus_tag="JN125_003510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000055676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase arm-type DNA-binding domain-containing
                     protein"
                     /protein_id="HAY8873149.1"
                     /translation="MFLNDSKIRKLKPSSRPVKLSDAHGLYLLVNPGGSRIWYLKYRF
                     NGKESRVSLGAYPLVSLAEARQQRDGIRKLLAQNINPAQQRMAEKSACSPEKCFKAVA
                     LAWHKTNKKWSADYAARILASMENHIFPAVGHLPVAALKTQDFTALLRVIENKGFLEV
                     ASRTRQQLSNIMRYAVQQGLTDSNPAQHLEGVTASPVKNHYPALPLERLPELLDRIGD
                     YRQGRELTRLAVVLTLHLFIRSSELRFARWSEIDFRHKIWTIPATREAIDKVRFSGRG
                     AKIRTPHIVPLSRQAIAILKQIQELSGHLDLVFPGDHNPYKPMSENTTNRALRLMGYD
                     TKTEICGHGLRAMACSALVESDLWSRDTVERQMSHQERNSVRAAYVHKAEHLEARKAM
                     MQWWSDYLDVCREGYVAPYIYARQHEAA"
BASE COUNT         2067 a         1760 c         1580 g         1839 t
ORIGIN      
        1 cttgtaatgg gttaagtgat aacagatgtc tggaaatata ggggcaaatc cacccagctc
       61 aggcactgga taaactcgac gcgctgtatg agcaatctgt agtcgcatta cgcaacgcca
      121 ttggcaacta tattacaagt ggcgaattac ctgatgaaaa cgcccgcaaa caaggtcttt
      181 ttgtctatcc atcactgacc gtaacctggg acggtagcac aaccaatccc cccaaaacgc
      241 gcgcatttgg tcgctttacc cacgcaggca gctacaccac cacgattact cgccctactc
      301 tctttcgttc gtatcttaat gaacaactta cgttgctgta tcaggattat ggtgcgcata
      361 tctcagtgca accctcgcag catgaaatcc cttatcctta tgtcatcgat ggctctgaat
      421 tgacacttga tcgctcaatg agcgctgggt taactcgcta ctttccgaca acagaactgg
      481 cgcaaattgg cgatgaaact gcagacggca tttatcatcc aactgaattc tccccgctat
      541 cgcattttga tgcgcgccgc gtcgattttt ccctcgcacg gttgcgccat tataccggta
      601 cgccagttga acattttcag ccgttcgtct tgtttaccaa ctacacacgt tatgtggatg
      661 aattcgttcg ttggggatgc agccagatcc tcgatcctga tagtccctac attgcccttt
      721 cttgtgctgg cgggaactgg atcaccgccg aaaccgaagc gccagaagaa gccatttccg
      781 accttgcatg gaaaaaacat cagatgccag catggcattt aattaccgcc gatggtcagg
      841 gtattactct ggtgaatatt ggcataggac cgtcaaatgc taaaaccatc tgcgatcatc
      901 tggcagtgct acgcccggat gtctggttga tgattggtca ctgtggcgga ttacgtgaaa
      961 gtcaggccat tggcgattat gtacttgcac acgcttattt acgcgatgac cacgttcttg
     1021 atgcggttct gccgcccgat attcctattc cgagcattgc tgaagtgcaa cgtgcgcttt
     1081 atgacgccac caagctggtg agtggcaggc ccggtgagga agtcaaacag cggctacgta
     1141 ctggtactgt ggtaaccaca gatgacagga actgggaatt acgttactca gcttctgcac
     1201 ttcgttttaa cttaagccgg gccgtagcaa ttgatatgga aagtgcaacc attgccgcgc
     1261 aaggatatcg tttccgcgtg ccatacggga cactactgtg tgtttcagat aaaccgttgc
     1321 atggcgagat taaacttccc ggtcaggcta accgttttta tgaaggcgct atttccgaac
     1381 acctacaaat tggcattcgg gcgatcgatt tgctgcgcgc agaaggcgac cgactgcatt
     1441 cacgtaaatt acgaaccttt aatgagccgc cgttccgata ataagttctg aaccttctca
     1501 tcagaaatag atgtgaagga ttaagtaaga catctggcaa atagcctgca atcaacgcgg
     1561 gctgtttgct tccttgggca gatgcgagtt tcattatcgt cttaatgatt tccgcatatt
     1621 aaaagcatgt atgctttcaa aatataatta taaaaaatcc cgccaacaac attagttttt
     1681 ataaaacaaa atataagatt atggctttag aatattttta tttctaatag acgagatttt
     1741 tcctgttatg atataatatg ctgatttaac acatgttaac gatttaccag taatgtaaat
     1801 aaattttcga ggagatcatt ccagtgggac gtaaatgggc caatattgtt gctaaaaaaa
     1861 cggctaaaga cggtgcaacg tctaaaattt atgcaaaatt cggtgtagaa atctatgctg
     1921 ctgctaaaca aggtgaaccc gatccagaat taaacacatc tttaaaattc gttattgaac
     1981 gtgcaaagca ggcacaagtt ccaaagcacg ttattgataa agcaattgat aaagccaaag
     2041 gcggcggaga tgaaacgttc gtgcagggcc gttatgaagg ctttggtcct aatggctcaa
     2101 tgattatcgc cgagacattg acttcaaatg ttaaccgtac gattgctaac gttcgcacaa
     2161 ttttcaataa aaaaggcggc aatatcggag cggcaggttc tgtcagctat atgtttgaca
     2221 atacgggtgt gattgtattt aaaggatcag accctgacca tatttttgaa attttacttg
     2281 aagctgaagt tgatgttcgt gatgtgactg aagaagaagg taacattgtt atttataccg
     2341 aacctactga ccttcataaa ggaatcgcgg ctctaaaagc agctggaatc actgagttct
     2401 caacaacaga attagaaatg attgcgcaat ctgaagttga gctttcccca gaagatttag
     2461 aaatctttga agggcttgtt gatgcccttg aagatgacga cgatgtacaa aaagtttatc
     2521 ataacgtcgc aaatctctaa ttatatttta aagaaatctg tctttacggc agatttcttt
     2581 aatctcatat aacccttata aaaaatataa tgttcaactc gtcatattga ttataaaaaa
     2641 tccccgttcc cagagaaata atatttatta aaattccagt tcttcttttt ctgattacag
     2701 aaggcaaagt ggcaattacg catagtttcc cgataaagac gcgatagcga catcccgcat
     2761 aaggcatttt tctctttatc tttgtacggt acttcatgga acagagtttt tgaccttgcg
     2821 aatcgtgatg tctgttgggg gggcaacttg ctcactaaag cgtgagactc gattaagcgc
     2881 acgaaacaca gaaatcaaaa aaaacggtca cttttttaca aggtaaccgg gtaaaaataa
     2941 tttttatttt ttaactgttt tgagactcat agagatgtct caaaactaaa atttggctcc
     3001 tctgactgga ctcgaaccag tgacatacgg attaacagtc cgccgttcta ccgactgaac
     3061 tacagaggaa tcgtgagaac gaggcgaata ttagcgatgc ccacccacaa tgtcaaagcc
     3121 tgttttttaa atttgaaatc gtttgctgaa ataatctgca ttttgtcgtt tattccgaca
     3181 caactggctt tttttcacac ttttgcggct cgggtcgagg gtatttccat agccaacgtc
     3241 cagtaaccat tcgccagtaa aacagcacgg cccgcacagc ccagtcggca aacattccca
     3301 ttcagacacc aaccacaccc cagccaagca tgattcccag cacataaccg actacaaccc
     3361 gacaacccca catgctcaac atcgaaaccc acatggcgta acgggcatca cgagcacctt
     3421 taaatccagc gggtagcacc catgaggcgg accaaatagg cataaataaa gcatttagcc
     3481 aaatcagaat cacaacgaca tgtttaacct gtggatccta ggtgtaaaac gatgccataa
     3541 ccccggcaaa gggagccgtt agccaggcga tggccgttaa tccaagagtg gaaagccaga
     3601 acacatgccg caactgaatc tctgcttgcg ctatctgccc tacccccaac cttcggcctg
     3661 taatgatcgt agaagcagag ccgagcgcac ttccgggtaa gttgataaga gccgcaattg
     3721 aaaacgcgat aaaatttccg gcaataacac tggtccccat cccggcaacg aacatttggg
     3781 ttaataaccg accactggta aataacactg attcgacact cgctggaata ccaatcccca
     3841 tgacttccca gataatgcta aaattcagcg gtttaaaata gctctttaac gaaatcctta
     3901 gcgcaggatt aaaaccaatc gccagcaccc acaaaattgc aactgcgcca atataacgag
     3961 aaatggttaa acccagccct gccccgacaa atcccagtcc cggccaagag aaaaggccgt
     4021 aaatcaatat gccgctaata ataatattaa gaatattcag gctaccgtta atcaatagcg
     4081 gtattttcgt attccctgca ccacgaagtg ccccgctacc aataagagtg atggcagctg
     4141 ctggataact gagtaccgtc agctccagat aagtcaacgc cagtgcttta acttctgtcg
     4201 tggcatcacc cgcgacgaaa tcaataattt gttcgccaaa atgatgaata agcgttgcca
     4261 acagtacggc aaacaacgtc atgatcacca atgactgccg cgtcgccacc ctcgctcgtc
     4321 gtcgatcccg cttaccgaga ctaaatgcca caacgacagt agtaccaaga tcgatagcag
     4381 caaaaaaagc cataatgacc atattgaagc tgtccgccaa tcccacgccg gccatcgcat
     4441 cttttcccag ccagctgacc agaaaagtgc tcagaacccc catcaacagg acacaggcat
     4501 tctccatgaa gataggaaca gcaagtgggg ttatctcgcg ccagaacaac actttgtagc
     4561 tcttgcgttt agcgtgccag cgagtgccgt gaacaacctg gcgtaaagca gaggagatat
     4621 tcaaagccga ccttaattgc agaaagtgaa accacatttc aaataatgag ggagaatcag
     4681 caaagctgca aagattttcg ccaacaaatt gtctgcaaat gcaacaaact gttgatagaa
     4741 acggcaaaca gttggggaat ttaaaaatcg ggtttgacaa aagatttttc gccgttaaga
     4801 tgtgcctcaa cagcgattcc tctgtagttc agtcggtaga acggcggact gttaatccgt
     4861 atgtcactgg ttcgagtcca gtcagaggag ccaaattcaa gttttcatgc ttatctgtac
     4921 gtctctattt gtttacgatt cagtaagttg gcgtgaaaat ccttcccggt gcgtatctgg
     4981 ttttctctcc gcatcgggat aatttggtgg tcagatctgg ggtcagtttg gttcgattct
     5041 ggagtgaccc ccaaatgttt ttaaacgatt ctaaaatccg caagttaaaa ccttcttccc
     5101 gtccggtaaa actctccgac gctcacggtc tgtatctgct cgtcaatccg ggcggttcac
     5161 gcatctggta tctcaaatat cgtttcaacg gaaaagaatc cagagtcagt cttggcgcat
     5221 acccgctggt ctcactggca gaagccaggc aacagcgcga cggtatccgc aagctactgg
     5281 cgcagaatat caacccggcg caacagcgca tggcagagaa atccgcctgc tcccctgaaa
     5341 agtgttttaa ggcggtggcg ctggcctggc acaaaaccaa caaaaaatgg tcggctgatt
     5401 atgccgcccg tattctcgcc agtatggaaa accatatctt cccggcggtt ggtcacctgc
     5461 ccgttgctgc gcttaaaacg caggatttca cggctttgtt gcgggttatc gagaataaag
     5521 gctttctgga agtcgcgtcc cgaacccggc agcaactcag caacatcatg cgctatgccg
     5581 ttcagcaggg acttaccgac agtaatccgg cgcagcatct ggaaggtgta actgcctccc
     5641 ccgtcaagaa tcactatccc gctttaccgc tggagcgatt gcctgaactg cttgaccgca
     5701 ttggcgacta ccggcagggc cgggagttaa cccggctggc ggtggtgctg acgttgcacc
     5761 tgttcatccg ttccagcgaa ctgcgtttcg cccgctggag tgagattgat ttcaggcaca
     5821 aaatctggac catccccgca acccgcgagg ccattgataa agtacggttt tcggggcgtg
     5881 gcgcaaaaat acgcaccccg catatcgtac cgctctcccg ccaggcgatt gccattctga
     5941 aacagataca ggagctttcc ggccatctgg atctggtgtt tcccggcgac cataatccgt
     6001 acaagccaat gagcgaaaac accaccaacc gggcgctgcg tctgatgggg tatgatacga
     6061 aaactgaaat ctgcgggcat ggactcaggg caatggcctg tagcgccctg gtggagtcgg
     6121 atctgtggtc acgcgataca gtggagcggc aaatgagcca ccaggagcgc aacagcgtgc
     6181 gtgcggcata tgtgcataag gcggagcatc tggaggcccg aaaggccatg atgcagtggt
     6241 ggtcggatta tctggatgtg tgccgcgagg ggtatgtcgc gccgtacatt tatgcgcggc
     6301 agcatgaggc agcctgaatc agaaatagcg taaatcatta aaactggaaa agcagatcct
     6361 gattgaccgg gatctgcttt tttttgttga tagatattgc cgtttttttg ttattatcaa
     6421 tcggaaaaca tctataaata tttggcccca aataattttg ggtgaaaacc aatcaatgaa
     6481 ctacttatcg ataggtaagt accagaaatt attccagtag aatattttca ggcgattgcc
     6541 tattaataaa tacattattg atagataact accttctgtg atttgcccgc aaatcacaga
     6601 agatgaaaag ctatcaatac gtgatatttt cacggaaatg ccaattaata ctccagaata
     6661 tctcctgacc ctatactctg ggacctgtaa gaactgcatc agatattcag agaccagaca
     6721 gatataagcc tgaaattatt ttgcttccaa taatttcagg agaaacctat caatgcatct
     6781 gttttcaaca ggcagccacc ttccgtgatt aacatgttaa tcacggaagg tgaaaagcta
     6841 tcaattatcg atatttccac agaattacca cttaatactt ccaaaaaagt gcgcaataaa
     6901 ataccgggca atctttcctg atacacatta tcactgcacc agctatacag agacaaaata
     6961 atctgcacca gcccctgtaa atcggttatc tgcgccagcg tcccgccgct ctacctgttc
     7021 aggactgcgc cagttcctgg ccctttggtt ttcggccctt tcaggccagg cgctgttacc
     7081 cttatcgccc ccttaacctt tatgaccctt tccctttctg gcgcaaccag tttattcgga
     7141 aatgtaccat gacagtctgc accagattgt attttcacca caggataacg gtcacagagt
     7201 gcaaaaaata acatgaagca ccgaagattg ttaatctata tgtagc
//
LOCUS       DADMHM010000197         7217 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.200, whole genome shotgun sequence.
ACCESSION   DADMHM010000197 DADMHM010000000
VERSION     DADMHM010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7217)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7217)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7217
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.200"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..227)
                     /locus_tag="JN125_003511"
     CDS             complement(<1..227)
                     /locus_tag="JN125_003511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_705972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2541 family protein"
                     /protein_id="HAY8873150.1"
                     /translation="MKSVFTISASLAISLMLCCTAQANDHKLLGVIAMPRNETNDLAL
                     KLPVCRIVKRIQLSADHGDLQLSGASVYFKAA"
     gene            604..2520
                     /gene="dnaK"
                     /locus_tag="JN125_003512"
     CDS             604..2520
                     /gene="dnaK"
                     /locus_tag="JN125_003512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001737966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HAY8873151.1"
                     /translation="MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQ
                     DGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAW
                     VEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRI
                     AGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEV
                     LATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSA
                     QQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDI
                     DDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLL
                     DVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAAD
                     NKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN
                     EDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE
                     SALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHAQQQTAGADASANNAKDD
                     DVVDAEFEEVKDKK"
     gene            2609..3739
                     /gene="dnaJ"
                     /locus_tag="JN125_003513"
     CDS             2609..3739
                     /gene="dnaJ"
                     /locus_tag="JN125_003513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HAY8873152.1"
                     /translation="MAKQDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAE
                     AKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIF
                     GGGRGRQRAARGADLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQT
                     CPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVERSKTLSVKIPA
                     GVDTGDRIRLAGEGEAGQHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAAL
                     GGEIEVPTLDGRVKLKVPGETQTGKLFRMRGKGVKSVRGGAQGDLLCRVVVETPVGLN
                     EKQKQLLQELQESFGGPTGEHNSPRSKSFFDGVKKFFDDLTR"
     gene            complement(3843..4052)
                     /gene="mokC"
                     /locus_tag="JN125_003514"
     CDS             complement(3843..4052)
                     /gene="mokC"
                     /locus_tag="JN125_003514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin MokC"
                     /protein_id="HAY8873153.1"
                     /translation="MLNTCRVPLTDRKVKEKRAMKQHKAMIVALIVICITAVVAALVT
                     RKDLCEVHIRTGQTEVAVFTAYESE"
     gene            4581..5747
                     /gene="nhaA"
                     /locus_tag="JN125_003515"
     CDS             4581..5747
                     /gene="nhaA"
                     /locus_tag="JN125_003515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HAY8873154.1"
                     /translation="MKHLHRFFSSDASGGIILIIAAILAMMMANSGATSGWYHDFLET
                     PVQLRVGSLEINKNMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAI
                     GGMIVPALLYLAFNYADPITREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALA
                     IIDDLGAIIIIALFYTNDLSMASLGVAAVAIAVLAVLNLCGVRRTGVYILVGVVLWTA
                     VLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSL
                     QGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMAVGIL
                     CGIGFTMSIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRLRPSV"
     gene            5813..6712
                     /gene="nhaR"
                     /locus_tag="JN125_003516"
     CDS             5813..6712
                     /gene="nhaR"
                     /locus_tag="JN125_003516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_705976.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional activator NhaR"
                     /protein_id="HAY8873155.1"
                     /translation="MSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEE
                     RLQGKLFKRKGRGLEPSELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVGVADA
                     LSKRLVSSVLNAAVVEGEPIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQEGL
                     FSVRIGECGVSFWCTNPPPEKPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNVEI
                     LGEFDDAALMKAFGAMHNAIFVAPTLYAYDFYADKTVVEIGRVENVMEEYHAIFAERM
                     IQHPAVQRICNTDYSALFSPAAR"
     gene            complement(6750..>7217)
                     /locus_tag="JN125_003517"
     CDS             complement(6750..>7217)
                     /locus_tag="JN125_003517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000871680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873156.1"
                     /translation="RFNYNLNTILLVNLMTCGFEDQSIDTGRFVLSRINNENYQFHHI
                     RFDCIQGEQGELVFEPSDVEYYFEPVTIQESGTSILKNELENSEDGAGQVGFQLSNDG
                     TNEIQYGKSNYYSFQHPHEGSNQIPLFIRPRTYGNNVSSGQIMSRVKIVVMYN"
BASE COUNT         1847 a         1684 c         1855 g         1831 t
ORIGIN      
        1 gcggctttga aataaaccga tgcaccgctt aactgtaaat cgccatggtc ggcagagagt
       61 tgtatgcgtt tcacaatgcg acaaacagga agtttcagcg ccagatcgtt ggtttcgtta
      121 cgcggcattg caatgacgcc gaggagttta tggtcgtttg cctgcgccgt gcagcacagc
      181 atcaggctaa tcgccaggct ggcggaaatc gtaaaaacgg attttataag gattctctta
      241 gtgggaagag gtagagggat gaatacccac tagtttactg ctgataaaga gaagattcag
      301 gtacgtaatc ttttcttttt attacaattt tttgatgaat gccttggctg cgattcattc
      361 tttatatgaa taaaattgct gtcaatttta cgtcttgtcc tgccatatcg cgaaatttct
      421 gcgcaaaagc acaaaaaatt tttgcatctc ccccttgatg acgtgggtta cgaccccatt
      481 tagtagtcaa ccgcagtgag tgagtctgca aaaaaatgaa attgggcagt tgaaaccaga
      541 catttcgccc ctattacaga ctcacaacca catgatgacc gaatatatag tggagacgtt
      601 tagatgggta aaataattgg tatcgacctg ggtactacca actcttgtgt agcgattatg
      661 gatggcacca ctcctcgcgt gctggagaac gccgaaggcg atcgcaccac gccttctatt
      721 attgcctata cccaggatgg tgaaactctg gttggtcagc cggctaaacg tcaggcagtg
      781 acgaacccgc aaaacaccct gtttgcgatt aaacgcctga ttggccgccg cttccaggac
      841 gaagaagtac agcgtgatgt ttccatcatg ccgttcaaaa ttattgctgc tgataacggc
      901 gacgcatggg tcgaagttaa aggccagaaa atggcaccgc cgcagatttc tgctgaagtg
      961 ctgaaaaaaa tgaagaaaac cgctgaagat tacttgggtg aaccggtaac tgaagctgtt
     1021 atcaccgtac cggcatactt taacgatgct cagcgtcagg caaccaaaga cgcaggccgt
     1081 atcgctggtc tggaagtaaa acgtatcatc aacgaaccga ccgcagctgc gctggcttac
     1141 ggtctggaca aaggtactgg caaccgtact atcgcggttt atgacctggg tggtggtact
     1201 ttcgatattt ctattatcga aatcgacgaa gttgatggcg aaaaaacctt cgaagttctg
     1261 gctaccaacg gtgataccca cctgggtggt gaagacttcg acagccgtct gatcaactac
     1321 ctggttgaag aattcaagaa agatcagggc attgacctgc gcaacgatcc gctggcaatg
     1381 cagcgcctga aagaagcggc agaaaaagcg aaaatcgaac tgtcttccgc tcagcagacc
     1441 gacgttaacc tgccgtacat cactgcagat gcgaccggtc cgaaacacat gaacatcaaa
     1501 gtgactcgtg cgaaactgga aagcctggtt gaagatctgg taaaccgttc cattgagccg
     1561 ctgaaagttg cactgcagga cgctggcctg tccgtatctg atatcgacga cgttatcctc
     1621 gttggtggtc agactcgtat gccaatggtt cagaagaaag ttgctgagtt ctttggtaaa
     1681 gagccgcgta aagacgttaa cccggacgaa gctgtagcaa tcggtgctgc tgttcagggt
     1741 ggtgttctga ctggtgacgt gaaagacgta ctgctgctgg acgttacccc gctgtctctg
     1801 ggtatcgaaa ccatgggcgg tgtgatgacg acgctgatcg cgaaaaacac cactatcccg
     1861 accaagcaca gccaggtgtt ctctaccgct gaagacaacc agtctgcggt aaccatccat
     1921 gtgctgcagg gtgaacgtaa acgtgcggct gataacaaat ctctgggtca gttcaacctg
     1981 gatggtatca acccggcacc gcgcggcatg ccgcagatcg aagttacctt cgatatcgat
     2041 gctgacggta tcctgcacgt ttccgcgaaa gataaaaaca gcggtaaaga gcagaagatc
     2101 accatcaagg cttcttctgg tctgaacgaa gatgaaatcc agaaaatggt acgcgacgca
     2161 gaagctaacg ccgaagctga ccgtaagttt gaagagctgg tacagactcg caaccagggc
     2221 gaccatctgc tgcacagcac ccgtaagcag gttgaagaag caggcgacaa actgccggct
     2281 gacgacaaaa ctgctatcga gtctgcactg actgcactgg aaactgctct gaaaggtgaa
     2341 gacaaagccg ctatcgaagc gaaaatgcag gagctggcac aggtttccca gaaactgatg
     2401 gaaatcgccc agcagcaaca tgcccagcag cagactgccg gtgctgatgc ttctgcaaac
     2461 aacgcgaaag atgacgatgt tgtcgacgct gaatttgaag aagtcaaaga caaaaaataa
     2521 tcgccctata aacgggtaat tatactgaca cgggcgaagg ggaatttcct ctccgcccgt
     2581 gcattcatct aggggcaatt taaaaaagat ggctaagcaa gattattacg agattttagg
     2641 cgtttccaaa acagcggaag agcgtgaaat caaaaaggcc tacaaacgcc tggccatgaa
     2701 ataccacccg gaccgtaacc agggtgacaa agaggccgag gcgaaattta aagagatcaa
     2761 ggaagcttat gaagttctga ccgactcgca aaaacgtgcg gcatacgatc agtatggtca
     2821 tgctgcgttt gagcaaggcg gcatgggcgg cggcggtttt ggcggcggcg cagacttcag
     2881 cgatattttt ggtgacgttt tcggcgatat ttttggcggc ggacgtggtc gtcaacgtgc
     2941 ggcgcgcggt gctgatttac gctataacat ggagctcacc ctcgaagaag ctgtacgtgg
     3001 cgtgaccaaa gagatccgca ttccgactct ggaagagtgt gacgtttgcc acggtagcgg
     3061 tgcaaaacca ggtacacagc cgcagacctg tccgacctgt catggttctg gtcaggtgca
     3121 gatgcgtcag ggtttctttg ccgtgcagca gacctgtcca cactgtcagg gccgcggtac
     3181 gctgatcaaa gatccgtgca acaaatgtca tggtcatggt cgtgttgagc gcagcaaaac
     3241 gctgtccgtt aaaatcccgg caggggtgga cactggagac cgcatccgtc ttgcgggcga
     3301 aggtgaagcg ggccagcatg gcgcaccggc aggcgatctg tacgttcagg ttcaggttaa
     3361 acagcacccg attttcgagc gtgaaggcaa caacctgtat tgcgaagtcc cgatcaactt
     3421 cgctatggcg gcgctgggtg gcgaaatcga agtaccgacc cttgatggtc gcgtcaaact
     3481 gaaagtgcct ggcgaaaccc agaccggtaa gcttttccgt atgcgcggta aaggcgtcaa
     3541 gtctgtccgc ggtggcgcac agggtgattt gctgtgccgc gttgtcgtcg aaacaccggt
     3601 aggcctgaac gagaagcaga aacagctgct gcaagagctg caagaaagct tcggtggccc
     3661 aaccggcgag cacaacagcc cgcgctcaaa gagcttcttt gatggtgtga agaagttttt
     3721 tgacgacctg acccgctaac ctccccaaaa gcctgcccgt gggcaggcct aggtaaaaat
     3781 agggtgcgtt gaagatatgc gagcacctgt aaagtggcgg ggatcactcc ccgccgttgc
     3841 tcttactcgg attcgtaagc cgtgaaaaca gcaacctccg tctggccagt tcggatgtga
     3901 acctcacaga ggtcttttct cgttaccagc gccgccacta cggcggtgat acagatgacg
     3961 atcagggcga caatcatcgc cttatgctgc ttcattgctc tcttctcctt gaccttacgg
     4021 tcagtaagag gcactctaca tgtgttcagc atataggggg cctcgggttg atggtaaaat
     4081 atcactcggg gcttttctct atctgccgtt cagctaatgc ctgagacaga cagcctcaag
     4141 cacccgccgc tattatatcg ctctctttaa cccattttgt tttatcgatt ctaatcctga
     4201 agacgcctcg catttttgtg gcgtaatttt ttaatgattt aattatttaa ctttaattta
     4261 tctctttatc gcaattattg acgacaagct ggattatttt tgaaatattg tcctaacaaa
     4321 taacgccgac tgacaagaaa ttaattatta cttttcctaa ttaatccctc agaaatcctc
     4381 accttaagct atgattatct gagcttaggg tcactcgtca gcgcttacag ccgtcaaaaa
     4441 ctcatctcac cgctgatggc gcaaattcta caaaggctcg taaaaaacga attattccta
     4501 cactataatc tgattttaac gatgattcgt gcggggtaaa atagtaaaaa cgatctattc
     4561 acctgaaaga gaaataaaaa gtgaaacatc tgcatcgatt ctttagcagt gatgcctcgg
     4621 gaggcattat tcttatcatt gccgctatcc tggcgatgat gatggccaac agcggcgcaa
     4681 ccagtggatg gtatcacgac tttctggaga cgccggttca gctccgggtt ggttcactcg
     4741 aaatcaacaa aaacatgctg ttatggataa atgacgcgct gatggcggta tttttcctgt
     4801 tagtcggtct ggaagttaaa cgtgaactga tgcaaggatc gctagccagc ttacgccagg
     4861 ccgcatttcc agttatcgcc gctattggtg ggatgattgt gccggcatta ctctatctgg
     4921 cctttaacta tgccgatccg attacccgcg aagggtgggc gatcccggcg gctactgaca
     4981 ttgcctttgc acttggtgtg ctggcgctgt tgggaagtcg tgttccgtta gcactgaaga
     5041 tctttttgat ggctctggct attatcgacg atcttggggc catcattatc atcgcattgt
     5101 tctacactaa tgacttatcg atggcctctc ttggcgtcgc ggctgtagca attgcggtac
     5161 tcgcggtatt gaatctgtgt ggtgtacgcc gcacgggcgt ctatattctg gttggcgtag
     5221 tgttgtggac tgcggtgttg aaatcggggg ttcacgcaac cttggcgggg gtaattgtcg
     5281 gcttctttat tcctttgaaa gagaagcatg ggcgttctcc agcgaagcga ctggagcatg
     5341 tgttacaccc gtgggtggcg tatctgattt tgccgctgtt tgcatttgct aatgctggcg
     5401 tttcactgca aggcgtcacg ctggatggct tgacctccat tctgccattg gggatcatcg
     5461 ctggcttgct gattggcaaa ccgctgggga ttagtctgtt ctgctggttg gcgctgcgtt
     5521 tgaaactggc gcatctgcct gagggaacga cttatcagca aattatggcg gtggggatcc
     5581 tgtgcggtat cggttttact atgtctatct ttattgccag cttggccttt ggtagcgtag
     5641 atccagaact gattaactgg gcgaaactcg gtatcctggt cggttctatc tcttcggcgg
     5701 taattggata cagctggtta cgcgttcgtt tgcgtccatc agtgtgacag gacggtttac
     5761 cggggagcca taaacggctc ccttttcatt gttatcaggg agagaaatga gcatgtctca
     5821 tatcaattac aaccacttgt attacttctg gcatgtctat aaagaaggtt ccgtggttgg
     5881 cgcagcggag gcgctttatt taactccaca aaccattacc ggacagatcc gggctctgga
     5941 agagcgcctg caaggcaaat tatttaagcg caagggacgt ggtctcgaac ccagcgagct
     6001 gggagaactg gtctatcgct atgccgataa aatgttcacc ttaagccagg aaatgctgga
     6061 tattgtgaac tatcgcaaag aatccaattt attgtttgac gttggcgtgg ctgatgcact
     6121 ttccaaacgc ctggtcagta gcgtgctgaa tgctgcagtg gtagaaggcg agccgattca
     6181 tcttcgctgc ttcgaatcca cccacgaaat gctactggag caattaagcc agcataaact
     6241 ggatatgatc atttccgact gtccgataga ctctacgcag caggaaggcc tgttctccgt
     6301 gagaattggc gaatgtggcg tgagtttctg gtgtacaaat ccaccaccag aaaaaccgtt
     6361 cccggcttgt ctggaagaac ggcgactttt gattcctggg cgacgttcaa tgttagggcg
     6421 caaattgctt aactggttta actcccaggg attaaacgta gaaatcctcg gcgagtttga
     6481 tgatgccgcg ttgatgaaag cttttggtgc aatgcacaat gcaatcttcg ttgccccaac
     6541 gctttatgca tatgactttt atgccgataa aactgtcgta gaaattggtc gcgtcgagaa
     6601 tgtgatggaa gagtaccatg ctatttttgc tgagcggatg attcagcacc cggcggtaca
     6661 gcgaatctgc aatacggatt attctgcgct ttttagtcca gcggcgcgtt aatcggcagc
     6721 tcccccaaag ttaaagtgga ggagatagat tagttgtaca taaccacgat tttgactcgg
     6781 ctcattattt gcccgcttga gacattattt ccatatgtac gcgggcgaat aaatagagga
     6841 atctgattac ttccttcatg gggatgctga aaagagtagt aattgctttt accatactgg
     6901 atttcattcg taccatcatt ggagagttga aagcctactt gacccgcacc gtcctcactg
     6961 ttttctaact cattttttaa tatgctggtt cctgactcct gtatcgtcac tggttcaaag
     7021 taatattcaa catcactggg ttcaaaaact aattcacctt gctcgccctg gatgcagtca
     7081 aatcttatat gatgaaactg ataattttca ttattgatac gagacagtac aaatcgtcca
     7141 gtgtcgatgg attgatcttc aaaaccacag gtcattaaat ttaccagtaa aatagtattt
     7201 aaattataat taaagcg
//
LOCUS       DADMHM010000198         7197 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.201, whole genome shotgun sequence.
ACCESSION   DADMHM010000198 DADMHM010000000
VERSION     DADMHM010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7197)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7197)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7197
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.201"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..313
                     /locus_tag="JN125_003518"
     CDS             <1..313
                     /locus_tag="JN125_003518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001268525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HAY8873157.1"
                     /translation="SEGKVDESIQWLKKSAEHGNNYAQYQMSKYLLKIGDIRGSEYYL
                     NLSADNGCVFAIKDIIKNMMDSGKYDDALIWVEKLKKLYPDTNTELYIQKITQKKKQS
                     K"
     gene            complement(655..1605)
                     /gene="cbl"
                     /locus_tag="JN125_003519"
     CDS             complement(655..1605)
                     /gene="cbl"
                     /locus_tag="JN125_003519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator Cbl"
                     /protein_id="HAY8873158.1"
                     /translation="MNFQQLKIIREAARQDYNLTEVANMLFTSQSGVSRHIRELEDEL
                     GIEIFVRRGKRLLGMTEPGKALLVIAERILNEASNVRRLADLFTNDTFGVLTIATTHT
                     QARYSLPEVIKAFRELFPEVRLELIQGTPQEIATLLQNGEADIGIASERLSNDPQLVA
                     FPWFRWHHSLLVPLDHPLTQITPLTLESIAKWPLITYRQGITGRSRIDDAFARKGLLA
                     DIVLSAQDSDVIKTYVALGLGIGLVAEQSSGEQEEENLIRLDTRHLFDANTVWLGLKR
                     GQLQRNYVWRFLELCNAGLSVEDIKRQVMENSEEEIDYQI"
     gene            complement(1707..2630)
                     /gene="nac"
                     /locus_tag="JN125_003520"
     CDS             complement(1707..2630)
                     /gene="nac"
                     /locus_tag="JN125_003520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrogen assimilation transcriptional regulator"
                     /protein_id="HAY8873159.1"
                     /translation="MNFRRLKYFVKIVDIGSLTQAAEVLHIAQPALSQQVATLEGELN
                     QQLLIRTKRGVTPTDAGKILYTHARAILRQCEQAQLAVHNVGQALSGQVSIGFAPGTA
                     ASSITMPLLQAVRAEFPEIVIYLHENSGAVLNEKLINHQLDMAVIYEHSPVAGVSSQA
                     LLKEDLFLVGTQDCPGQSVDVNAIAKMNLFLPSDYSAIRLRVDEAFSLRRLTAKVIGE
                     IESIATLTAAIASGMGVAVLPESAARSLCGAVNGWMSRITTPSMSLSLSLNLPARANL
                     SPQAQAQAVKELLMSVISSPVMEKRQWQLVS"
     gene            2957..3032
                     /locus_tag="JN125_003521"
     tRNA            2957..3032
                     /locus_tag="JN125_003521"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2990..2992,aa:Asn,seq:gtt)
     gene            complement(3088..4023)
                     /gene="ldtA"
                     /locus_tag="JN125_003522"
     CDS             complement(3088..4023)
                     /gene="ldtA"
                     /locus_tag="JN125_003522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310812.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L,D-transpeptidase"
                     /protein_id="HAY8873160.1"
                     /translation="MMRRVNIFCSFALLFASHTSLAVTYPLPPEGSRLVGQSFTVTVP
                     DHNTQPLETFAAQYGQGLSNMLEANPGADVFLPKSGSQLTIPQQLILPATVRKGIVVN
                     VAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNTRREYA
                     KRGESLPAFVPAGPDNPMGLYAIYIGRLYAIHGTNANFGIGLRVSQGCIRLRNDDIKY
                     LFDNVPVGTRVQIIDQPVKYTTEPDGSNWLEVHEPLSRNRAEYESDRKVPLPVTPSLR
                     AFISGQEVDVNRANAALQRRSGMPVQISSGSRQMF"
     gene            complement(4085..5170)
                     /gene="cobT"
                     /locus_tag="JN125_003523"
     CDS             complement(4085..5170)
                     /gene="cobT"
                     /locus_tag="JN125_003523"
                     /EC_number="2.4.2.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide--dimethylbenzimidazole
                     phosphoribosyltransferase"
                     /protein_id="HAY8873161.1"
                     /translation="MQTLADLLNTIPAIDPAAMSRAQRHIDGLLKPVGSLGRLEALAI
                     QLAGMPGLNGIPHVGKKAVLVMCADHGVWEEGVAISPKEVTAIQAENMTRGTTGVCVL
                     AAQAGANVHVVDVGIDSAEPIPGLINMRVARGSGNIASAPAMSRRQAEKLLLDVICYT
                     RELAKNGVTLFGVGELGMANTTPAAAAAIVSTITGRDPEEVVGIGANLPTDKLANKID
                     VVRRAITLNQPNPQDGVDVLAKVGGFDLVGMAGVMLGAASCGLPVLLDGFLSYAAALA
                     ACQMSPAIKPYLIPSHLSAEKGARIALSHLGLEPYLNMEMRLGEGSGAALAMPIIEAA
                     CAIYNNMGELAASNIVLPGNTTSDLNS"
     gene            complement(5182..5925)
                     /gene="cobS"
                     /locus_tag="JN125_003524"
     CDS             complement(5182..5925)
                     /gene="cobS"
                     /locus_tag="JN125_003524"
                     /EC_number="2.7.8.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobinamide-GDP ribazoletransferase"
                     /protein_id="HAY8873162.1"
                     /translation="MSKLFWAMLSFITRLPVPRRWSQGLDFEHYSRGIITFPLIGLLL
                     GAISGLVFMVLQAWCGVPQAALFSVLVLALMTGGFHLDGLADTCDGVFSARSRDRMLE
                     IMRDSRLGTHGGLALIFVVLAKILVLSELALRGEPILASLAAACAVSRGTAALLMYRH
                     RYAREEGLGNVFIGKIDGRQTCVTLGLAAIFAAVLLPGMHGVAAMVVTMVAIFILGQL
                     LKRTLGGQTGDTLGAAIELGELVFLLALL"
     gene            complement(5922..6467)
                     /gene="cobU"
                     /locus_tag="JN125_003525"
     CDS             complement(5922..6467)
                     /gene="cobU"
                     /locus_tag="JN125_003525"
                     /EC_number="2.7.1.156"
                     /EC_number="2.7.7.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adenosylcobinamide
                     kinase/adenosylcobinamide-phosphate guanylyltransferase"
                     /protein_id="HAY8873163.1"
                     /translation="MMILVTGGARSGKSRHAEALIGDSSQVLYIATSQILDDEMAARI
                     EHHRQGRPEHWRTVERWQHLDELIHADINPNEVVLLECVTTMVTNLLFDYGGDKDPDE
                     WDYQAMEQAINAEIQSLIAACQRCPAKVVLVTNEVGMGIVPESRLARHFRDIAGRVNQ
                     QLAAAANEVWLVVSGIGVKIK"
BASE COUNT         1984 a         1876 c         1548 g         1789 t
ORIGIN      
        1 gtcagaagga aaagtagatg aatcaataca atggctgaag aaatcagcgg aacatggtaa
       61 taattacgca caatatcaga tgtcaaaata tttattaaaa ataggtgata ttagaggatc
      121 ggaatattat ctaaacttat ctgcggataa cggatgtgta tttgcaataa aagatattat
      181 caaaaatatg atggatagtg gaaagtacga tgacgccctc atttgggttg aaaaattgaa
      241 aaaattgtat cctgacacaa ataccgaact ttacatacaa aaaataacgc agaaaaaaaa
      301 gcaatccaaa taataattat atataattac tcgcacagag ttacagtatt gcaagaaata
      361 tatctagcat ataaagtcgc cgccagtaaa gataaagtac tgtgtaatcc ttcctcccat
      421 ataggggtaa aaacttagca tccagtgccc tcgacttaat ttttagtatt ttctctgtga
      481 agtgacactt cgtaggattc agttcatgtt taccagaaaa aaggtggtca atctggtggc
      541 cttgacaatc tcgatttttt gttttagctt tccaatcagc cagttaatgg ctacggcgat
      601 cccagtcaga ggagccaaat ttctgaaaag cccgctttta tagcgggctt tttgctatat
      661 ctgataatca atttcctctt cactgttttc catcacctgc cgcttgatat cctcaactga
      721 cagtcctgca ttacaaagtt ccagaaagcg ccagacatag ttacgctgaa gttgtcctcg
      781 cttcagtccc aaccagacag tattagcatc gaaaagatgc cgcgtatcca gacggattaa
      841 attctcttcc tcttgttcgc cgctggattg ttcggcaact aatccgatcc caagcccaag
      901 agcaacatag gttttaatga catcagaatc ctgcgcactt aatacaatat ctgccagcaa
      961 acctttgcgg gcaaatgcgt catcaatacg tgagcgcccc gtaatcccct gtcggtaagt
     1021 gattaacggc cacttcgcta ttgattccag cgtcaatggt gtaatttgcg ttaagggatg
     1081 atcgagtgga acaagcaaac tatggtgcca acgaaaccac gggaaggcga cgagctgcgg
     1141 gtcattactc aaacgctcgc tggcgatacc aatatcagct tcgccatttt gcaacaacgt
     1201 cgcaatttcc tgtggcgtcc cctggattag ctcgagccga acctccggga aaagttcgcg
     1261 aaaagcttta atgacctctg gcaagctata acgtgcctga gtatgcgtcg ttgcaatagt
     1321 gagaacgcca aacgtatcgt tggtaaacag gtctgcaagc cgacgaacat tactggcttc
     1381 attcagaata cgttctgcaa tgaccagtaa tgctttgccc ggttcagtca tgcccagcag
     1441 ccgcttacct cgtcgaacaa atatttcgat gccaagttca tcctccagtt cccgaatatg
     1501 acggctgacg ccggactgtg aggtaaaaag catattcgca acctctgtca ggttgtaatc
     1561 ctgacgtgca gcctcgcgga ttatctttag ttgttggaaa ttcacggtaa actccgggca
     1621 gttcagattt cccgttattg ttaaagtcta atgcccggca taacaaataa taaaaacccg
     1681 catcttattc catcccgata taacgcttag ctcaccaatt gccactgcct tttttccatc
     1741 actggggaac taatcactga cattaacaac tctttcactg cctgtgcctg tgcctgtggc
     1801 gataagttcg ctctggcggg taaatttaat gacaaagaga gactcatgga aggagtggta
     1861 atgcgtgaca tccacccatt tactgcgcca cataacgaac gcgcggccga ttcgggtaat
     1921 actgcaacgc ccatgccgct tgcaatcgct gcggtaagcg tggcaataga ctcaatttca
     1981 ccaatgactt ttgctgtgag tcgccgtaag gaaaaagcct catcaacacg aagtctaata
     2041 gcactgtaat cactggggag aaagaggttc attttcgcaa tagcattcac atcaacgctt
     2101 tgccccgggc aatcttgagt tcctaccaga aaaagatctt ctttcagcaa agcctgactg
     2161 gatacaccag ccacagggga atgctcataa atcaccgcca tatcgagttg gtgatttatc
     2221 aatttttcgt taagcactgc accactattt tcatgaagat agataacgat ctccggaaat
     2281 tcagcgcgaa ccgcctgtaa taagggcatg gtgatggatg acgcagcggt tcctggtgca
     2341 aagccaatcg agacttgccc cgataatgcc tgaccaacgt tatgcaccgc cagttgggcc
     2401 tgttcacact gacgtaaaat ggcccgcgca tgggtataga gaatttttcc ggcgtctgtt
     2461 ggcgtaacgc cccgctttgt acggatcaaa agttgttgat ttaactcacc ttccagtgtg
     2521 gcaacctgct ggctgagcgc tggttgtgcg atatgcaata cttcagcagc ctgggtcagg
     2581 ctaccaatat ctacaatttt tacgaagtat ttcaggcgtc tgaagttcat gttgcctccg
     2641 gtttttaaga atcggcccaa gtgccgccat tacttacaac cagattgcaa gatgcttgcc
     2701 agttttattt tggcgttgat gtacaagcta accaactgtc aaataagaga ttatgataga
     2761 ttcgtcattt gctcctttaa tcagctgtcg cgttcccctg ccctataaaa ggagggtatg
     2821 caccacgata gttcattacc caataagatt gaaagctcac cactttgttg aaattgacag
     2881 caaacaaacc aaaaaatgca tttcaccctt tgacatcacc atgcactgcc attaatatgc
     2941 gccccgttca cacgattcct ctgtagttca gtcggtagaa cggcggactg ttaatccgta
     3001 tgtcactggt tcgagtccag tcagaggagc caaattcaaa aaagcctgct ttctagcagg
     3061 ctttttgctt tctaattacc aacgctctta aaacatctgt cttgaaccag aactaatttg
     3121 cacaggcatt cccgatcgac gttgcaacgc agcatttgcg cgatttacat caacttcttg
     3181 cccgctgata aacgcccgca aagatggggt taccggcaat ggcacttttc ggtcagactc
     3241 atattctgca cgattgcgcg acaacggctc atgaacttcc agccagttcg agccatctgg
     3301 ttcagtggtg tattttactg gctggtcgat aatttgcaca cgcgtcccaa caggaacatt
     3361 atcaaacaga tatttgatat cgtcattgcg cagacgaata cagccctgac ttacccggag
     3421 cccaatacca aaattggcat tggtaccatg gatggcatac aacctgccaa tataaatcgc
     3481 gtacagcccc atgggattat cggggcccgc aggaacaaat gcgggcaaac tctcccctcg
     3541 tttcgcatat tcgcgccgag tgttcggcgt tggcgtccag gttggagctt cttgtttacg
     3601 ttcaacggta gtcacccagt tacgcggggt ttctcgccca gcctggccga taccaatagg
     3661 aaagacttcc acagtattac tgtctggtgg gtagtaataa agacgcatct cagcgacgtt
     3721 aaccacaatc cctttacgaa cagtggcggg caaaatcagt tgctgcggaa tggtgagttg
     3781 cgagccagac ttcggcaaaa aaacatcagc gcccgggttc gcttccagca tgttacttaa
     3841 cccttgcccg tattgtgcgg caaaagtctc cagcggctgg gtattgtgat caggaacagt
     3901 tacagtaaac gactgcccca ctaaacggct accctctgga ggtaatggat aagttaccgc
     3961 caggctagta tggctggcaa aaagcagagc aaatgagcaa aaaatattta cacgacgcat
     4021 catgtccctt tcctaagtcg cgaaagctat ccgttaagta tagcttttat cagacttttc
     4081 gtttttaact gttcaaatca gaagtcgtat tccccggtag aacaatatta ctggcagcaa
     4141 gttcgcccat gttgttatat atcgcacagg cagcttcgat gatgggcatc gccagagctg
     4201 cgccactccc ctcacctaaa cgcatctcca tattgagata aggctccagc cccaaatgcg
     4261 acagcgcaat acgcgcccct ttttctgccg acaggtgaga aggaatgaga tacggtttga
     4321 ttgcaggaga catctggcag gctgcgagcg cggcagcata agaaagaaat ccatccagca
     4381 acacgggtaa accgcaggaa gcagcgccta acatcacgcc agccattccg accaaatcaa
     4441 atccacccac ttttgccagg acatcaacgc catcctgcgg atttggttga ttcaacgtaa
     4501 tcgcccggcg cacaacatca attttattag ccagtttatc tgtcggcagg tttgcgccaa
     4561 tcccaaccac ttcttcagga tcccggccag tgattgtgct gactattgcc gctgccgctg
     4621 ccggtgtcgt gtttgccatc cccagttcac ctacaccaaa cagcgtgaca ccgttttttg
     4681 ccagctcccg cgtataacat atgacgtcca aaagcaactt ttcagcctga cggcgactca
     4741 ttgccggagc tgaagcaata ttgccgctac ctcgtgcgac acgcatgttg ataagcccgg
     4801 ggataggctc agcactatca ataccaacat caactacgtg gacgttagcg cccgcttgtg
     4861 ctgccagcac acacacgccg gttgttccgc gggtcatatt ttcagcctga atggctgtca
     4921 cttcttttgg ggaaatagcg accccttcct cccagacgcc gtgatcggca cacataacca
     4981 gtaccgcttt tttgcccaca tgcggtatgc cattcaaccc cggcattccc gccagttgta
     5041 tggcaagcgc ctccagcctt cccaggctac caacaggttt gagtaacccg tcaatatgcc
     5101 gttgtgcacg cgacatagcg gcaggatcga tagcagggat cgtattcagt aaatcggcaa
     5161 gtgtttgcat gtcacgtctc tttatagcag tgccagcagg aagaccagtt caccaagctc
     5221 tatagcagct cccagcgtat cgccggtttg cccgcccagc gtacgtttga gaagctgacc
     5281 gaggatgaaa atcgccacca tcgttaccac catagcagcc acaccatgca tacccggcaa
     5341 taatacggca gcaaaaatag cggctaagcc gagtgtgacg caggtttgtc gcccatcaat
     5401 tttgccaatg aacacattgc caagcccttc ttcccgcgca taacgatgac gatacatcaa
     5461 taatgcggca gtcccgcggc tgaccgcaca tgctgccgcc agcgatgcaa ggatcggttc
     5521 gccacgcaga gccaactcgc ttaataccag aatctttgcc agtacaacaa aaatcaatgc
     5581 cagaccgcca tgggtgccta aacggctatc acgcatgatt tccaacatgc gatcgcggct
     5641 acgtgcagaa aatacgccat cacaggtatc ggcgaggccg tccaggtgga atcccccggt
     5701 catcagcgcc agcacaagta cgctaaacag tgccgcctgt ggtacgccac accatgcctg
     5761 cagcaccatg aagaccagcc cgctaatcgc gccaagcaat aatccaatta aaggaaaagt
     5821 aataataccg cgagaataat gctcgaaatc cagtccctgg gaccagcgac gcggtacagg
     5881 cagacgcgta ataaatgaga gcatcgccca aaataattta ctcatttgat ttttactcca
     5941 atacccgaaa ccaccagcca tacttcattt gccgcagcgg ccaactgctg atttacccgc
     6001 ccggcaatat cacgaaaatg tcgtgccaga cgactctccg gcacaatccc cattcccact
     6061 tcgttagtca ctaatacaac ctttgcgggg caacgttggc aggcagcaat caacgactga
     6121 atctcagcat taatcgcctg ttccatcgcc tgataatccc attcatcagg gtctttatcg
     6181 ccgccataat caaacaacag attagtcacc attgtggtaa cgcattccag caacacaacc
     6241 tcattcgggt taatgtctgc atgaattaat tcatcaagat gttgccagcg ctccactgtg
     6301 cgccagtgct ccgggcggcc ttgccgatga tgttctatcc gtgcagccat ctcatcatca
     6361 aggatttgcg aggtagcgat atacagaacc tgtgaagagt ccccaataag cgcctctgcg
     6421 tggcgactct tcccgctccg tgcgcccccc gtcaccaaaa tcatcatacc gactcctgat
     6481 tcaaatgtat gatggtattc attgaacaga acaatggatc ccccaccgtt gctgaccgca
     6541 aaacatttac gcgattaata ctgcgcgtaa tataattaaa aatccagcat tctcaatcca
     6601 ttacgaaata agatggcatt acggaatagc cagactttct cgtgttaacg tccgacaaaa
     6661 tgtgtcattg acagcggttt ctgtggattg acacatttca ttcagataat gaattaatgc
     6721 tactgccgga ccaaccagca aacgggcatt gtgttctgaa atccaggcta ttgattcaac
     6781 gtcagcgaca gatctgcgct gtaaaagaac ttgtaaaaca acgcaataga attatccgga
     6841 atggtggcga ctatgcacta gaacaccaca atttcgctct ctcggtaagg cactgtcaca
     6901 gcattcaaca gaatgtgact tgccagattt attagcgcca ccagatgttt aaccgggtaa
     6961 ccacgaccca gtcggggata tattccatct tctcgctgac atcatcaaga ataaaaaggt
     7021 ttatcacact cagagcaacg ttcttcagca ggcgggataa ttcttcaaca tttaaaagat
     7081 gtgttattaa aggcatacaa actggacgta ttgtattttc ttttggtggt tgacctaagg
     7141 tagcagttta tcctgatgcg ctgagatttc tgtaatatct acgtcaacat tctcctc
//
LOCUS       DADMHM010000199         7034 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.202, whole genome shotgun sequence.
ACCESSION   DADMHM010000199 DADMHM010000000
VERSION     DADMHM010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7034)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7034)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7034
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.202"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..1324)
                     /gene="astB"
                     /locus_tag="JN125_003526"
     CDS             complement(<1..1324)
                     /gene="astB"
                     /locus_tag="JN125_003526"
                     /EC_number="3.5.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-succinylarginine dihydrolase"
                     /protein_id="HAY8873164.1"
                     /translation="MNAWEVNFDGLVGLTHHYAGLSFGNEASTRHRFQVSNPRLAAKQ
                     GLLKMKTLADAGFPQAVIPPHERPFIPVLRQLGFSGSDEQVLEKVARQAPHWLSSVSS
                     ASPMWVANAATIAPSADTLDGKVHLTVANLNNKFHRSLEAPVTESLLKAIFNDEEKFS
                     VHSALPQVALLGDEGAANHNRLGGHYGEPGMQLFVYGREEGNDTRPSRYPARQTREAS
                     EAVARLNQVNPQQVIFAQQNPDVIDQGVFHNDVIAVSNRQVLFCHQQAFARQSQLLAN
                     LRARVNGFMAIEVPATQVSVSDAVSTYLFNSQLLSRDDGSMMLVLPQECREHAGVWGY
                     LNELLAADNPISELKVFDLRESMANGGGPACLRLRVVLTEEERRAVNPAVMMNDTLFN
                     ALNDWVDRYYRDRLTAADLADPQLLREGREALDVLSQLLNLGSVYPFQR"
     gene            complement(1321..2799)
                     /gene="astD"
                     /locus_tag="JN125_003527"
     CDS             complement(1321..2799)
                     /gene="astD"
                     /locus_tag="JN125_003527"
                     /EC_number="1.2.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinylglutamate-semialdehyde dehydrogenase"
                     /protein_id="HAY8873165.1"
                     /translation="MTLWINGDWITGQGASRVKRNPVSGEVLWQGNDADAAQVEQACR
                     AARAAFPRWARLSLAERQVVVERFAGLLESNKAELTAIIARETGKPRWEAATEVTAMI
                     NKIAISIKAYHVRTGEQRSEMPDGAASLRHRPHGVLAVFGPYNFPGHLPNGHIVPALL
                     AGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQGGRETGQALSALEDLDGLLF
                     TGRANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVADIDAAVHLTIQSAFVTAGQR
                     CTCARRLLLKSGAQGDAFLARLVAVSQRLTPGNWDDEPQPFIGGLISEQAAQQVVTAW
                     QQLEAMGGRTLLAPRLLQSETSLLTPGIIEMTGVAGVPDEEVFGPLLRVWRYDSFEEA
                     ILMANNTRFGLSCGLVSPEREKFDQLLLEARAGIVNWNKPLTGAASTAPFGGIGASGN
                     HRPSAWYAADYCAWPMASLESDSLTLPATLNPGLDFSDEVVR"
     gene            complement(2796..3830)
                     /gene="astA"
                     /locus_tag="JN125_003528"
     CDS             complement(2796..3830)
                     /gene="astA"
                     /locus_tag="JN125_003528"
                     /EC_number="2.3.1.109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine N-succinyltransferase"
                     /protein_id="HAY8873166.1"
                     /translation="MMVIRPVERSDVSALMQLASKTGGGLTSLPANEATLSARIERAI
                     KTWQGELPKSEQGYVFVLEDSETGTVAGICAIEVAVGLNDPWHNYRVGTLVHASKELN
                     VYNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKSRFMFMAAFRDKFNDKVV
                     AEMRGVIDEHGYSPFWQSLGKRFFSMDFSRADFLCGTGQKAFIAELMPKHPIYTHFLS
                     QEAQDVIGQVHPQTAPARAVLEKEGFRYRNYIDIFDGGPTLECDIDRVRAIRKSRLVE
                     VAEGQPAQGDFPACLVANENYHHFRVVLARTDPATERLILTAAQLDALKCHAGERVRL
                     VRLCAVEKTA"
     gene            complement(3827..5047)
                     /gene="astC"
                     /locus_tag="JN125_003529"
     CDS             complement(3827..5047)
                     /gene="astC"
                     /locus_tag="JN125_003529"
                     /EC_number="2.6.1.11"
                     /EC_number="2.6.1.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinylornithine/acetylornithine transaminase"
                     /protein_id="HAY8873167.1"
                     /translation="MSQPITRENFDEWMIPVYAPAPFIPVRGEGSRLWDQQGKEYIDF
                     AGGIAVNALGHAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFC
                     NSGAEANEAALKLARKFAHDRYGSHKSGIMAFKNAFHGRTLFTVSAGGQPAYSQDFAP
                     LPPDIRHAAYNDINSASALIDDATCAVIVEPIQGEGGVVPASNAFLQGLRELCDRHNA
                     LLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGDFPVGALLTTEECASVMTVG
                     THGTTYGGNPLASAVAGKVLELINTPEMLNGVKQRHDWFVERLNTINHRYGLFSEVRG
                     LGLLIGCVLNADYAGQAKQISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTGLDR
                     FAAACEHFVSRGSS"
     gene            5493..6299
                     /gene="xthA"
                     /locus_tag="JN125_003530"
     CDS             5493..6299
                     /gene="xthA"
                     /locus_tag="JN125_003530"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HAY8873168.1"
                     /translation="MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPL
                     EEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGN
                     VTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLD
                     IGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSK
                     GFDDNRGLRIDLLLASQPLAECCVETGIDYEIRSMEKPSDHAPVWATFRR"
     gene            6466..>7034
                     /locus_tag="JN125_003531"
     CDS             6466..>7034
                     /locus_tag="JN125_003531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310483.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HAY8873169.1"
                     /translation="MNAERKFLFACLIFALVIYAIHAFGLFDLLTDLPHLQTLIRQSG
                     LFGYSLYILLFIIATLFLLPGSILVIAGGIVFGPLLGTLLSLIAATLASSCSFLLARW
                     LGRDLLLKYVGHSHTFQAIEKGIARNGIDFLILTRLIPLFPYNIQNYAYGLTTIAFWP
                     YTLISALTTLPGIVIYTVMASDLANEGITL"
BASE COUNT         1653 a         2012 c         1766 g         1603 t
ORIGIN      
        1 cgcgctggaa cggataaacc gaaccgagat tcagtaattg gctcaataca tccagtgctt
       61 cccgcccttc gcgcagcaat tgcgggtcgg ccagatcggc agcagtaaga cgatcgcggt
      121 agtaacgatc cacccagtca ttgagcgcat taaacaaggt atcgttcatc atcaccgccg
      181 gatttaccgc ccggcgttct tcttctgtca ataccacccg caaccgcagg cacgccgggc
      241 cgccgccatt cgccatgctt tcacgtaagt caaagacttt tagttcgcta atcgggttgt
      301 cagcggcaag gagttcattg agataacccc atactccggc gtgttcccga cactcctgag
      361 gcagcaccaa catcatggaa ccatcatcgc ggctcaacag ttggctgtta aacagatagg
      421 tagacaccgc atccgacacg gaaacctgag ttgccggaac ttctatcgcc ataaaaccgt
      481 tcacccgcgc ccgcaggttt gccagtaact gtgactggcg agcgaacgcc tgttggtggc
      541 aaaacagcac ctggcggtta cttacggcaa tcacgtcatt atgaaaaaca ccctggtcga
      601 taacgtccgg gttttgctgg gcgaaaatca cctgttgggg attcacctga ttaagccttg
      661 ccaccgcctc gctggcttcg cgagtctgtc gcgccggata acgggaaggc cgggtatcat
      721 tgccttcttc tcgcccgtag acaaaaagtt gcatacccgg ctcaccgtaa tgaccgccga
      781 gacgattgtg gtttgccgcc ccctcatcac cgagcaacgc tacctgcggc aacgccgaat
      841 ggacgctaaa tttctcttcg tcgttaaaaa tagcttttaa cagcgattca gtgacgggcg
      901 cttccagcga acggtgaaat ttattgttca ggttggcaac ggtgagatgc actttgccat
      961 ccagcgtatc ggcagatggc gcgatcgttg ccgcattggc tacccacatt ggcgaagcgg
     1021 agctgacgct ggaaagccag tgcggtgcct ggcgtgcaac tttttccagt acctgctcat
     1081 cgctaccact gaatcccaac tgacgcagca ccggaataaa cggacgctcg tgcggcggga
     1141 tcacggcctg ggggaatccc gcatcggcaa gggttttcat tttcagtaag ccctgtttcg
     1201 ccgccagtcg cgggttagac acctgaaaac ggtgacgggt agaggcttca ttaccaaacg
     1261 acaggccagc gtaatgatgc gtcagcccta ccagcccgtc gaaattaact tcccaggcgt
     1321 tcatcgcacc acctcatcgg aaaaatccag cccggggtta agcgttgcgg gcaaagttaa
     1381 cgagtccgac tccaggctcg ccataggcca tgcgcagtaa tctgcggcat accaggcgct
     1441 ggggcgatgg ttaccggatg caccaatgcc gccgaatggc gcggtactgg cagcaccagt
     1501 aagcggtttg ttccagttaa caatccccgc ccgcgcctcc agcaacagtt gatcgaattt
     1561 ttcccgctcg ggggaaacca gaccgcaaga gagtccgaag cgagtgttat tcgccattag
     1621 aatcgcttcc tcgaaagaat cataacgcca gacgcgcaat aacggtccga acacctcttc
     1681 atctggtacg ccagcaacgc ctgtcatttc aatgatcccc ggcgtcagca acgatgtctc
     1741 tgattgtaat aagcgcggcg caagcagggt tcgtccgccc atcgcttcca gttgctgcca
     1801 ggcagtaacc acctgctgtg cggcctgttc agaaatcagc ccgccaataa acggctgcgg
     1861 ttcgtcatcc cagttgcccg gcgttaatcg ctggctgacg gcaaccagac gagcaagaaa
     1921 cgcatcgccc tgcgctccgc ttttgagcaa taaacggcgg gcgcaggtgc agcgttgccc
     1981 ggctgtgaca aacgccgact gaatggtcag atggacagcc gcgtcgatat ccgccacctc
     2041 atcgataatt agcggattat taccgcccat ctcaagggcg agaattttct ccggctgacc
     2101 ggagagctgg cgatgcagct ggtagccggt attggcgcga ccggtaaaca gcaaaccgtc
     2161 gagatcctcc agcgcactca gcgcctgacc cgtttcacgc ccgccctgca ccaggttcag
     2221 cacgcccggc ggcaagccag cctgctgcca taaacgcatt accgcttcgc cactccacgg
     2281 tgtcagttcg ctgggtttaa agataatggt gttacctgcc agcaatgccg gaacgatatg
     2341 tccgttcggc aaatgaccag ggaaattata cggcccaaac accgccagca cgccgtgcgg
     2401 gcgatgtcgc aggctcgccg caccgtccgg catttcacta cgctgctcgc cggtacgaac
     2461 gtgatacgcc ttaattgata tcgcgatttt attgatcatc gccgtcactt cggttgccgc
     2521 ttcccagcgc ggcttacccg tttctctggc aataatcgcg gttaattcgg ctttattgct
     2581 ttccagcaat ccggcaaagc gttcgacaac gacctgacgt tcagccaatg agagccgcgc
     2641 ccagcgcgga aacgccgcac gggctgcccg acaagcctgt tcgacctgag cggcatcggc
     2701 atcattgcct tgccataaca cctcgcccga taccggatta cgcttcacac gcgatgcgcc
     2761 ctggcccgtt atccagtcac cgttaatcca taaagtcatg ctgttttctc cactgcgcac
     2821 aggcgcacca gacgaacgcg ctcccctgcg tggcatttga gggcatccag ttgtgcggcg
     2881 gttaaaatca aacgctcggt tgccggatcg gtacgcgcca gcaccacgcg gaaatggtga
     2941 taattttcat tggcgaccag gcaggccgga aaatcgccct gcgcaggctg cccttctgcc
     3001 acttccacca gccgactttt acggatggcg cgcacgcggt cgatgtcaca ctcaagcgtt
     3061 ggcccgccgt cgaagatgtc gatatagttg cggtaacgaa aaccttcttt ctccagcacc
     3121 gcgcgggcag gcgcggtttg cggatgtacc tgaccgatga cgtcctgggc ttcctgggat
     3181 aaaaagtggg tatagatcgg atgtttcggc atcagttctg caataaatgc cttttgcccg
     3241 gtgccgcaga gaaaatcggc gcggctaaaa tccatcgaaa agaagcgttt accgaggctt
     3301 tgccagaacg gtgaatagcc gtgttcgtca atcaccccgc gcatttcagc aaccactttg
     3361 tcattaaact tgtcgcgaaa agccgccata aacataaagc gcgatttcga cagcaaatag
     3421 ccgttgccct ctttgcgcca gtccgggtcg agaaacagcg tgcacagctc gctgctgccg
     3481 gtgtgatcgt tactaagaaa cagcgtcggc aatgcgttat agacattcag ctcttttgag
     3541 gcgtgaacca acgtgccgac ccgatagttg tgccagggat cgttcagccc aaccgccacc
     3601 tcaatggcgc aaatccccgc cacggtgcct gtctcgctat cttccagcac gaacacatag
     3661 ccctgctcgc ttttgggcag ttcgccttgc caggttttga ttgccctttc gatacgcgcg
     3721 gaaagcgtgg cttcattagc gggaagcgac gtcaggccgc cgcccgtttt gctggcaagc
     3781 tgcatcagcg ccgagacatc tgagcgctca acgggacgga tgaccatcat gatgaacctc
     3841 ggctaacaaa gtgttcgcaa gcagctgcaa agcgatccag tccggtcgtc acctcttctt
     3901 cgctgacatt gagcgcaggc gcaaaacgca ccacgttgcc acccgcaatc agtaccataa
     3961 cgcctgcttt cgccgcctcc tgagagatct gtttcgcttg tccggcgtaa tcggcattca
     4021 gtacacagcc aatcaacaaa cctaagccgc gaacttcact gaacaaaccg tagcggtgat
     4081 taatggtatt aagacgctca acaaaccagt cgtgacgctg tttaacgcca ttaagcatct
     4141 ctggtgtgtt gatgagctcc agcactttgc ccgccaccgc cgaggccagc ggattgccgc
     4201 cataggtggt gccatgagtg ccaacggtca tcacgctggc gcactcttcg gttgttaaca
     4261 acgcaccgac cgggaaatcg ccgcccagcg ctttggcggt agttaacaga tcaggtgtca
     4321 cgccgtagtg catataggca tacagttccc cggtgcgccc gacgccggtt tgtacttcat
     4381 caaaaatcaa cagcgcattg tggcggtcac acaattcacg cagaccttgt aaaaacgcgt
     4441 tgctggctgg caccacaccg ccttccccct ggatgggttc gacaatcacc gcacaggtgg
     4501 cgtcgtcaat cagcgcgctg gcagagttaa tatcgttata tgcagcatga cggatatctg
     4561 gtggcagtgg cgcaaaatcc tgtgaatagg ctggctgccc acccgcactg acagtaaaca
     4621 gcgtgcgacc atgaaacgca tttttaaacg ccatgatacc gctcttatgg ctgccgtagc
     4681 ggtcgtgagc gaatttacgc gccagtttta gcgccgcttc gttggcttcc gcaccggagt
     4741 tacaaaagaa gacgcgatcg gcaaacgtgg cgtcgatcaa ttttttcgcc agtcgcagta
     4801 ccggctcgtt ggtgtaaccg ttgccggtat gccagaactt actcgcctgt tcgttcagcg
     4861 cttcacgcag ttccggatgc gcatggccca gcgcgttcac cgcaatgcca cccgcgaagt
     4921 cgatatactc tttcccctgc tgatcccaca agcgcgaacc ttcgccacgt accggtataa
     4981 agggtgccgg agcgtaaaca ggtatcatcc attcatcaaa gttttcacgc gtaattggct
     5041 gagacatagc gacctctaca gtaaataatt cgttatttat atgttgacaa taagtaatgt
     5101 ttgcgctgta aatgtagatt gcagggttcg tgccagccag tgataaaagt gcataaacgg
     5161 cggaggctaa ctggaaatca aggagttata accaaaccat atgcatttaa agtgcatata
     5221 aagtgaatac gtttgcgatg tgggtgaata aaaagaataa aaaacgcaat gttatgcaga
     5281 agtaaaatat aattctggaa ttgtgatcat tgacgaaatt tactggaaat tactgcgcca
     5341 ttctgacgca gcgcgcacca aaagcgggca ttttttgcgc catcgttgac atcattaaca
     5401 accatcgatc aaatcactta acaacaggcg gtaagcaacg cgaaattctg ctaccatcca
     5461 cgcactcttt atctgaataa atggcagcga ctatgaaatt tgtctctttt aatatcaacg
     5521 gcctgcgcgc cagacctcac cagcttgaag ccatcgtcga aaagcaccaa ccggatgtga
     5581 ttggcctgca ggagacaaaa gttcatgacg atatgtttcc gctcgaagag gtggcgaagc
     5641 tcggctacaa cgtgttttat cacgggcaga aaggccatta tggcgtggcg ctgctgacca
     5701 aagagacgcc gattgccgtg cgtcgcggct ttcccggtga cgacgaagag gcgcagcggc
     5761 ggattattat ggcggaaatc ccctcactgc tgggtaatgt caccgtgatc aacggttact
     5821 tcccgcaggg tgaaagccgc gaccatccga taaaattccc ggcaaaagcg cagttttatc
     5881 agaatctgca aaactacctg gaaaccgaac tcaaacgtga taatccggta ctgattatgg
     5941 gcgatatgaa tatcagccct acagatctgg atatcggcat tggcgaagaa aaccgtaagc
     6001 gctggctgcg taccggtaaa tgctctttcc tgccggaaga gcgcgaatgg atggacaggc
     6061 tgatgagctg ggggttggtc gataccttcc gccatgctaa tccgcaaaca gcagatcgtt
     6121 tctcatggtt tgattaccgc tcaaaaggtt ttgacgataa ccgtggtctg cgcatcgacc
     6181 tgctgctcgc cagccaaccg ctggcagaat gttgcgtaga aaccggcatc gactatgaaa
     6241 ttcgcagcat ggaaaaaccg tccgatcacg cccccgtctg ggcgaccttc cgccgctaat
     6301 ttagcagctc tcctggctca aactgggtca ggagaattaa ccttgagaaa aatcaacaaa
     6361 ctgtcagtaa tgatttgttg cctgccgtcc tttgttatac cgtcactgcg tttttagttg
     6421 tctgaccact tctctattat caagtttgat ataggaaact ccacgatgaa tgctgagcgt
     6481 aaatttcttt tcgcctgtct tatttttgcg ctggtcattt acgctatcca cgctttcggt
     6541 ttattcgatc tgctcaccga tttaccccac ttacagacac tcattcgcca gagcggattg
     6601 ttcggttata gcctctatat tctgttattc atcattgcca ccctctttct gttaccagga
     6661 agcatactgg tgatcgctgg aggaatagtt tttggcccgc tcttagggac actactctca
     6721 ttaattgccg ccacgctggc ctcctcgtgc tcattcctgc tggcgcggtg gctgggacgt
     6781 gatttactgc tgaaatacgt gggccatagc cataccttcc aggccattga aaaaggcatt
     6841 gcgcgtaacg gtattgattt tcttattctg acccgcttaa tcccgttgtt tccttacaat
     6901 attcaaaatt acgcttacgg attaaccacc atcgccttct ggccttatac ccttatttcg
     6961 gcactcacga ccctgcccgg tattgttatt tataccgtga tggcaagcga tctcgccaat
     7021 gaaggcatta cgct
//
LOCUS       DADMHM010000200         7030 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.203, whole genome shotgun sequence.
ACCESSION   DADMHM010000200 DADMHM010000000
VERSION     DADMHM010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 7030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7030
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.203"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..642)
                     /gene="tauD"
                     /locus_tag="JN125_003532"
     CDS             complement(<1..642)
                     /gene="tauD"
                     /locus_tag="JN125_003532"
                     /EC_number="1.14.11.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="taurine dioxygenase"
                     /protein_id="HAY8873170.1"
                     /translation="MSERLSITPLGPYIGAQISGADLTRPLSDNQFEQLYHAVLRHQV
                     VFLRDQAITPQQQRALAQRFGELHIHPVYPHAEGVDEIIVLDTHNDNPPDNDNWHTDV
                     TFIETPPAGAILAAKELPSTGGDTLWTSGIAAYEALSVPFRQLLSGLRAEHDFRKSFP
                     EYKYRKTEEEHQRWREAVAKNPPLLHPVVRTHPVSGKQALFVNEGFTTRIVDVS"
     gene            complement(639..1466)
                     /gene="tauC"
                     /locus_tag="JN125_003533"
     CDS             complement(639..1466)
                     /gene="tauC"
                     /locus_tag="JN125_003533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="taurine ABC transporter permease TauC"
                     /protein_id="HAY8873171.1"
                     /translation="MSVLINEKLHSRRLKWRWPLSRQVTLSIGTLAVLLTVWWTVAAL
                     QLISPLFLPPPQQVLAKLLTIAGPQGFMDATLWQHLAASLTRIVLALLAAVVIGIPVG
                     IAMGLSPTVRGILDPVIELYRPVSPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMS
                     ALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAE
                     LIAATRGLGFMVQSAGEFLATDVVLAGIAVIAIIAFLLELGLRALQRRLTPWHGEVQ"
     gene            complement(1463..2230)
                     /gene="tauB"
                     /locus_tag="JN125_003534"
     CDS             complement(1463..2230)
                     /gene="tauB"
                     /locus_tag="JN125_003534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="taurine ABC transporter ATP-binding subunit"
                     /protein_id="HAY8873172.1"
                     /translation="MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLL
                     NLIAGFVPYQHGSIQLAGKRIEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGIEK
                     IQRLEIAHQVLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD
                     AFTRDQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSSGPGRVLERLPLNFA
                     RRFVAGESSRSIKSDPQFIAMREYVLSRVFEQREAFS"
     gene            complement(2243..3205)
                     /gene="tauA"
                     /locus_tag="JN125_003535"
     CDS             complement(2243..3205)
                     /gene="tauA"
                     /locus_tag="JN125_003535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414899.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="taurine ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY8873173.1"
                     /translation="MAISSRNTLLAALAFIAFQAQAVNVTVAYQTSAEPAKVAQADNT
                     FAKESGASVDWRKFDSGASIVRALASGDVQIGNLGSSPLAVAANQQVPIEVFLLASKL
                     GNSEALVVKKTISKPEDLIGKRIAVPFISTTHYSLLAALKHWGIKPGQVEIVNLQPPA
                     IIAAWQRGDIDGAYVWAPAVNALEKDGKVLTDSEQVGQWGAPTLDVWVVCKDFAEKHP
                     EVVKAFAKSAIDAQQPYIANPDAWLKQPENISKLARLSGVPEGDVPGLVKGNTYLTPQ
                     QQTAELTGPVNKVIIDTAQFLKEQGKVPAVANDYSQYVTSRFVQ"
     gene            3821..4492
                     /locus_tag="JN125_003536"
     CDS             3821..4492
                     /locus_tag="JN125_003536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016241930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L family deacetylase"
                     /protein_id="HAY8873174.1"
                     /translation="MDKVLDSALLSSANKRKGILAIGAHPDDIELGCGASLARLAQKG
                     IYIAAVVMTTGNSGTDGIIDRHEESRNAPKILGCHQTIHLNFADTRAHLQLNDMISAL
                     EDIIKNQIPSDVEIMRVYTMHDADRHQDHLAVYQASMVACRTIPQILGYETSSTWLSF
                     MPQVFESVKEEYFTVKLAALKKHKSQERRDYMRHDRLRAVAQFRGQQVNSDLGEGFVI
                     HKMIL"
     gene            4502..5651
                     /locus_tag="JN125_003537"
                     /pseudo
     CDS             4502..5651
                     /locus_tag="JN125_003537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414897.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
     gene            5629..6210
                     /locus_tag="JN125_003538"
     CDS             5629..6210
                     /locus_tag="JN125_003538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012602184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
                     /protein_id="HAY8873175.1"
                     /translation="MKNYLKLNVKEKNIQIADQVIIDETAGEVVIGANTRICHGAVIQ
                     GPVVIGANCLIGNYAFIRPGTIISNGVKIGFATEIKNAVIEAEATIGPQCFIADSVVA
                     NQAYLGAQVRTSNHRLDEQPVSVRTPEGIIATGCDKLGCYIGQRSRLGVQVIILPGRI
                     ISPNTQLGPRVIVERNLPTGTYSLRQELIRTGD"
     gene            6212..6985
                     /gene="yaiO"
                     /locus_tag="JN125_003539"
     CDS             6212..6985
                     /gene="yaiO"
                     /locus_tag="JN125_003539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaiO family outer membrane beta-barrel protein"
                     /protein_id="HAY8873176.1"
                     /translation="MIKRTLLAAAIFSALPAYAGLTSITAGYDFTDYSGDHGNRNLAY
                     AELVAKVENATLLFNLSQGRRDYETEHFNATRGQGAVWYKWNNWLTTRTGIAFADNTP
                     VFARQDFRQDINLALLPKTLFTTGYRYTKYYDDVEVDAWQGGVSLYTGPVITSYRYTH
                     YDSSDAGGSYSNMISVRLNDPRGTGYTQLWLSRGTGAYTYDWTPETRYGSMKSVSLQR
                     IQPLTEQLNLGLTAGKVWYDTPTDDYNGLQLAAHLTWKF"
BASE COUNT         1733 a         1845 c         1685 g         1767 t
ORIGIN      
        1 gctgacatcg acaattcgcg tagtaaagcc ttcattcaca aacagcgcct gtttaccgct
       61 caccggatgc gttcgcacca ccggatgtag caacggagga tttttcgcga ccgcctcgcg
      121 ccagcgttga tgttcctcct cggttttgcg gtatttgtat tccgggaacg atttacggaa
      181 atcatgctcc gcacgcagcc cgctcagcag ctggcggaag ggaacagaga gcgcctcata
      241 ggccgcaata ccgctggtcc agagcgtatc accgccggtc gaaggtaatt ctttagctgc
      301 cagaatcgcc cctgcgggtg gcgtttcaat aaatgtcaca tcggtatgcc agttgtcgtt
      361 atctggcgga ttatcgttat gggtatccag cacgatgatc tcgtcaaccc cttcggcatg
      421 agggtaaaca gggtgaatat gcagttcgcc aaaacgctgg gccagcgcgc gttgctgctg
      481 cggcgtaatg gcttgatcgc gcagaaacac cacctgatgg cgcagcaccg catggtaaag
      541 ctgttcaaac tgattatcgc ttaacgggcg cgtcaggtcg gcacccgaaa tttgtgcgcc
      601 gatatacggc cccagcgggg taatgctcag acgttcactc attgtacttc tccatgccag
      661 ggcgtcagac ggcgctgtaa cgcgcgcaaa cccagttcta aaagaaaggc gataatcgca
      721 atcaccgcga ttcccgccag caccacgtca gtcgcgagaa attcacccgc tgactgaacc
      781 ataaatccta aaccgcgcgt cgcggcaatc agctccgccg ctaccagcgt agaccagccc
      841 acacccagac caatgcgtaa tccggtgagg atttccggca gcgcgccggg caaaatgaca
      901 aaccacagca cctgcgcacg gctggcaccc agcgactggg cggcacgaat gcgaacctgc
      961 tgcgcgcttt tcacccccgc cagcgccgac atcgccaccg gtgcaaaaat cgctaaatag
     1021 atcagtaaga tcttcgaggt ttcaccaata ccaaaccaga tcaccatcag cggcaaataa
     1081 gccagcggcg acaccggacg ataaagttcg attaccggat ccagaatgcc gcgcaccgtc
     1141 gggcttagcc ccatggcgat cccgaccgga ataccgatca ccaccgccgc gagtagcgcc
     1201 agcacaatgc gcgtcaggct ggctgccaga tgctgccaca gcgtggcgtc cataaatccc
     1261 tgcggtccgg caatggtgag cagttttgcc agtacttgtt gcggcggcgg caaaaacagc
     1321 gggctaatca gttgcagcgc cgccaccgtc caccatacag tgagtaaaac cgctaacgtg
     1381 ccaatgctta aggtcacctg acgcgagagc ggccagcgcc atttcagccg ccgcgaatgc
     1441 agtttttcat taatgagcac actcatgaga acgcctcccg ttgctcaaat acgcggctta
     1501 aaacatattc gcgcatggcg atgaattgtg gatcggactt gatgctgcgg ctcgactctc
     1561 ccgcaacaaa gcggcgagca aagttgagcg gcagccgctc cagcacacgg ccagggccgg
     1621 atgaaagcag aaccagttca gtcgccataa acaccgcttc ttctatatcg tgggtaatca
     1681 acagcacctg cttgcccgtc tcctgccaga gtttcagcag cagagtttgc atctggtcgc
     1741 gggtgaaggc gtccagcgca ccaaacggtt cgtcgagtaa taacagctgg ggattcgccg
     1801 ccagcgcgcg ggcaatcccc acccgctgac gttgaccacc ggaaagctgc cagatatagc
     1861 gtttttctgc gccttccagc cccacttttt tcagcacctg gtgcgcgatt tccagtcgct
     1921 gtattttctc tatacctgcc aattgcaggc cgaacgccac gttgtcctgt acattgcgcc
     1981 acggtagcag cccttcattc tgaaaaacca ccccgcgctc tgctcccggt ccctcaatac
     2041 gcttacccgc cagttgaatg ctgccatgct gataaggcac aaaaccggca atcagattca
     2101 gcaacgtggt tttaccgcag ccggacggcc ccagcaccac cagtagctcg ccgctttcca
     2161 gcgtcaggtt gatatcttcc agtgccggtt tgccgccata atcggcatag agatgagaga
     2221 tttgcagcat ctgcgcctcc ttttattgca cgaagcgcga ggtaacgtac tggctgtaat
     2281 cattcgctac agccgggacc ttgccctgct ctttcaaaaa ctgcgcggtg tcgatgatta
     2341 ctttgttcac cggtccggtc agttctgccg tttgttgctg cggcgtcaga taggtattcc
     2401 ccttaaccag ccccggaacg tcaccttccg gcacgccgct taaacgcgcc agtttgctga
     2461 tgttttccgg ctgtttcagc cacgcgtctg ggttagcaat gtacggttgc tgagcatcga
     2521 tggcgctttt agcgaacgct ttcactacct caggatgttt ctcggcaaaa tctttgcaca
     2581 ccacccagac gtccagcgtt ggcgcacccc actgcccgac ctgttcagaa tcggtcaaca
     2641 ccttgccgtc tttttccagg gcgttaaccg ccggtgccca gacataagca ccatcaatat
     2701 caccccgctg ccatgcggcg ataatcgcgg gcggctgcag gttcacaatc tccacttgcc
     2761 ctggtttaat cccccagtgt ttcagcgccg ccagcaggct gtagtgggtg gtggagataa
     2821 acggtacggc aatgcgtttg ccaatcaaat cttcgggttt gctgatagtt ttctttacca
     2881 ccagcgcttc ggagttaccc agttttgacg ccagcaagaa gacttcaatc ggcacctgtt
     2941 ggttggctgc aaccgctaat gggctggaac cgaggttgcc gatttgcacg tcgccagaag
     3001 ccagcgcccg cacgatgctg gctccgctgt caaacttacg ccagtccacg ctcgccccgc
     3061 tctctttagc aaaggtgttg tcggcctgag ccactttcgc cggttcggct gaggtttgat
     3121 acgccacggt gacgttcacc gcctgtgcct gaaaagcgat gaatgccagt gcggcaagaa
     3181 gtgtgttacg cgatgaaatt gccatgattg tctgctcccc agtcttgtta tgggagcagt
     3241 attcaggaat aaaaacattc attaaaagaa ttagtcgtta tcgcacagat gattttattc
     3301 ttagcaaaaa aacggcaaag gaaagattaa atatgcaatt actccgttct aacaattggg
     3361 aaaattacta cacttcattt tagtgatgca taaacaacca cattacgaga tttattactt
     3421 cattgtttct atcaatatca atacatataa taaaaccatt atattcgcat tttatatatc
     3481 actgtatcat tctcaatcac tcgcatatta cattcacata atgtatataa acaatacttg
     3541 ttcacagaac atatttttta aatgcaatta attgacaaac taaatcacat ctaaatacaa
     3601 tgtataaaac aaaataacta tacataccaa acatacaaac acttaatata tgaattgcat
     3661 aaaaacatta cccagtcgaa cctccgggtc tgaaagccct tgcttttcag ttattagcaa
     3721 catttaacat ttataaatta acatctggct gcgccagaga ttacgtctct gagtgcatcg
     3781 ttgtgcttgt agtataataa ataaaatgga gtgtcattaa gtggataagg ttttagattc
     3841 agccctcctt tcttcggcaa ataaaagaaa gggtatcctt gctattggcg cacatcctga
     3901 cgatatagaa ttaggctgtg gcgcatcgct tgctcgtctt gcgcaaaaag gaatttatat
     3961 cgcagcagtg gtgatgacta ccggcaactc tggtacagat ggaataatcg atcgccatga
     4021 agaatcgcgc aacgccccaa agatattagg gtgccaccaa actattcatc ttaattttgc
     4081 tgacacccgc gctcatttac agctcaatga tatgatttcc gccctggaag acatcattaa
     4141 aaatcaaatt ccttctgatg ttgaaatcat gcgggtatat accatgcatg atgccgaccg
     4201 ccatcaggat catctcgctg tttatcaagc ttcaatggtt gcctgccgca ctattccaca
     4261 aattctcggc tacgaaacct caagtacctg gctttcattt atgcctcagg tttttgaatc
     4321 cgttaaagaa gaatatttca cagtcaaact tgctgcatta aaaaaacata aaagccagga
     4381 acgacgtgat tatatgcgtc atgatcgcct gcgtgcagtt gcacaatttc gcgggcaaca
     4441 ggtcaatagc gatctgggtg aaggctttgt aattcataaa atgattcttt gagcaaattg
     4501 catgaaaacc tggatattta tctgtatgtc catagcaatg ttgctatggt ttttaagtac
     4561 gctaagacgt aaacccagtc aaaagaaagg ctgtattgac gccattatac ctgcgtataa
     4621 cgaaggcccg tgtctggcgc agtcactgga taatctactg cgtaaccctt atttttgccg
     4681 ggtaatttgc gttaacgacg gctccacgga caataccgaa gcggtcatgg cggaagtcaa
     4741 acgcatatgg ggcgaccgct ttgttgccgt cacgcaaaaa aataccggta aaggtggtgc
     4801 gctgatgaat ggcctcaatt atgccacctg cgaccaggtt tttttaagtg atgccgacac
     4861 ctatgttccg cccgatcaag acggaatggg ctatatgctg gcagaaattg agcgcggggc
     4921 tgttaccgca catccgcgcg accgtaaagt tgccgatgat tgttatgaag cgcacgctac
     4981 agcagctcct gggcggcgca ccgtttatta tcagcggtgc ctgcggaatg ttccgtactg
     5041 atgtattgcg taagttcggt ttctcggatc gtactaaagt cgaagacctt gatctcacct
     5101 ggacattagt ggcaaacggc taccgtattc ggcaggcgaa tcgctgcatc gtatacccac
     5161 aggaatgcaa cagtccgcgt gaggagtggc gtcgctggcg gcgttggatt gtgggctacg
     5221 cggtctgtat gcgcctgcat aaaaggcttt tatttagccg cttcggtatc ttcagtatat
     5281 ttcctatgct gttggttgtg atttatggcg ttgggattta tctcactacc tggtttaatg
     5341 aattcatcac caccgggccg catggtgtgg tgttggcaat gtttccgctt atctgggtcg
     5401 gcgtagtttg tgttattggt gcttttagcg cctggtttca tcgttgctgg ttgttggtgc
     5461 ctttagcgcc gctttccgtt gtgtatgtat tattagctta tgccatctgg attatttatg
     5521 gacttattgc cttttttact ggacgcgaac ctcagcgcga caaacccacc cgctattccg
     5581 cactggtgga agcgtcaacc acttattccc aaccttctgt cacaggaact gaaaaactat
     5641 ctgaagctta atgttaaaga gaaaaatatt cagattgcag accaggtaat tattgatgaa
     5701 actgcaggtg aagttgttat cggcgcgaat acccgtattt gtcatggtgc cgttattcag
     5761 ggtccggtag tgattggcgc aaactgcctg ataggtaatt atgcgtttat tcgtcctggc
     5821 acaataatca gcaatggtgt aaaaattggt tttgccaccg aaattaaaaa tgcggttatt
     5881 gaagcggaag caacgattgg tccgcaatgt tttattgccg actcggtagt tgcaaaccag
     5941 gcatatttgg gcgcacaagt acgtaccagt aatcatcgtc tggatgaaca gcctgtgtct
     6001 gttcgaactc cagagggaat tatcgctacc ggatgcgata aattaggttg ttatatcggg
     6061 cagcgttcac gccttggcgt acaagttatt attttgcctg ggcgaattat ttccccgaac
     6121 acgcaacttg gcccgcgcgt gattgtagaa cgtaatttac ctaccggaac ttattcactc
     6181 cgacaagaac ttatccgtac aggagattaa aatgataaaa cggacgttat tagcggcggc
     6241 catttttagc gcattgcccg cttatgccgg gttaacgtcc attaccgcgg gctacgattt
     6301 taccgattat tctggcgatc atggcaaccg taatttagcg tatgctgaac tggtggcgaa
     6361 agttgaaaac gcaacgctgc tttttaatct ttcccagggg cgtcgtgatt atgaaactga
     6421 acatttcaat gccactcgcg gtcagggtgc ggtctggtat aaatggaata actggctgac
     6481 aacccgaacg ggtattgcct ttgcggataa tacgccggtc tttgcccgcc aggattttcg
     6541 tcaggatatt aacctggccc tgttgccaaa aacgcttttc acgaccggtt atcgctacac
     6601 taaatattac gatgatgtcg aagtcgatgc ctggcaaggc ggcgtatcac tctatactgg
     6661 cccggtgatc accagctacc gctataccca ttatgactcc agcgatgcag gtggtagtta
     6721 tagcaatatg atttccgtgc gtctgaatga cccgcgcggc actggttata cgcaactatg
     6781 gctaagccgc ggaacaggcg cttacaccta tgactggacg ccagaaacac gctacggcag
     6841 catgaagagc gtcagtctgc aacgtattca accgctgact gagcaactta atctcgggct
     6901 gacggcaggt aaagtgtggt acgacacccc aaccgatgat tataacggtc tgcaacttgc
     6961 agcccatctg acctggaaat tctgattcct tctgccgccc gctatcctgg gcggccttcc
     7021 ctgccgatta
//
LOCUS       DADMHM010000201         6964 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.204, whole genome shotgun sequence.
ACCESSION   DADMHM010000201 DADMHM010000000
VERSION     DADMHM010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6964)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6964)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6964
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.204"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(94..541)
                     /locus_tag="JN125_003540"
                     /pseudo
     CDS             complement(94..541)
                     /locus_tag="JN125_003540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312957.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acetyltransferase"
     gene            698..1627
                     /gene="metA"
                     /locus_tag="JN125_003541"
     CDS             698..1627
                     /gene="metA"
                     /locus_tag="JN125_003541"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HAY8873177.1"
                     /translation="MPIRVPDELPAVNFLREENVFVMTTSRASGQEIRPLKVLILNLM
                     PKKIETENQFLRLLSNSPLQVDIQLLRIDSRESRNTPAEHLNNFYCNFEDIQEQNFDG
                     LIVTGAPLGLVEFNDVAYWPQIKQVLEWSKDHVTSTLFVCWAVQAALNILYGIPKQTR
                     TDKLSGVYEHHILHPHALLTRGFDDSFLAPHSRYADFPAALIRDYTDLEILAETEEGD
                     AYLFASKDKRIAFVTGHPEYDAQTLAQEYFRDVEAGLDPEVPYNYFPHNDPQNTPRAS
                     WRSHGNLLFTNWLNYYVYQITPYDLRHMNPTLD"
     gene            1896..3497
                     /gene="aceB"
                     /locus_tag="JN125_003542"
     CDS             1896..3497
                     /gene="aceB"
                     /locus_tag="JN125_003542"
                     /EC_number="2.3.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate synthase A"
                     /protein_id="HAY8873178.1"
                     /translation="MTEQATTTDELAFTRPYGEQEKQILTAEAVEFLTELVTHFTPQR
                     NKLLAARIQQQQDIDNGTLPDFISETASICDADWKIRGIPADLEDRRVEITGPVERKM
                     VINALNANVKVFMADFEDSLAPDWNKVIDGQINLRDAVNGTISYTNEAGKIYQLKPNP
                     AVLICRVRGLHLPEKHVTWRGEAIPGSLFDFALYFFHNYQALLAKGSGPYFYLPKTQS
                     WQEAAWWSEVFSYAEDRFNLPRGTIKATLLIETLPAVFQMDEILHALRDHIVGLNCGR
                     WDYIFSYIKTLKNYPDRVLPDRQAVTMDKPFLNAYSRLLIKTCHKRGAFAMGGMAAFI
                     PSKDEEHNNQVLNKVKADKSLEANNGHDGTWIAHPGLADTAMAVFNDILGSRKNQLEV
                     MREQDAPITADQLLAPCDGERTEEGMRANIRVAVQYIEAWISGNGCVPIYGLMEDAAT
                     AEISRTSIWQWIHHQKMLSNGKPVTKALFRQMLGEEMKVIASELGEERFSQGRFDDAA
                     RLMEQITTSDELIDFLTLPGYCLLA"
     gene            3527..4831
                     /gene="aceA"
                     /locus_tag="JN125_003543"
     CDS             3527..4831
                     /gene="aceA"
                     /locus_tag="JN125_003543"
                     /EC_number="4.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase"
                     /protein_id="HAY8873179.1"
                     /translation="MKTRTQQIEELQKEWTQPRWEGITRPYSAEDVVKLRGSVNPECT
                     LAQLGAARMWRLLHGESKKGYINSLGALTGGQALQQAKAGIEAVYLSGWQVAADANLA
                     ASMYPDQSLYPANSVPAVVERINNTFRRADQIQWSAGIEPGDPRYVDYFLPIVADAEA
                     GFGGVLNAFELMKAMIEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAARL
                     AADVTGVPTLLVARTDADAADLITSDCDPYDSEFITGERTSEGFFRTHAGIEQAISRG
                     LAYAPYADLVWCETSTPDLELARRFAQAIHAKYPGKLLAYNCSPSFNWQKNLDDKTIA
                     SFQQQLSDMGYKFQFITLAGIHSMWFNMFDLANAYAQGEGMKHYVEKVQQPEFAAAKD
                     GYTFVSHQQEVGTGYFDKVTTIIQGGTSSVTALTGSTEESQF"
     gene            5014..6750
                     /gene="aceK"
                     /locus_tag="JN125_003544"
     CDS             5014..6750
                     /gene="aceK"
                     /locus_tag="JN125_003544"
                     /EC_number="2.7.11.5"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional isocitrate dehydrogenase
                     kinase/phosphatase"
                     /protein_id="HAY8873180.1"
                     /translation="MPRGLELLIAQTILQGFDAQYGRFLEVTSGAQQRFEQADWHAVQ
                     LAMKNRIHLYDHHVGLVVEQLRCITNGQSTDAAFLLRVKEHYTRLLPDYPRFEIAESF
                     FNSVYCRLFDHRSLTPERLFIFSSQPERSFRTIPRPLAKDFHPDHGWESLLMRVISDL
                     PLRLRWQNKSRDIHYIIRHLTETLGTDNLAESHLQVANELFYRNKAAWLVGKLITPSG
                     TLPFLLPIHQTDDGELFIDTCLTTTAEASIVFGFARSYFMVYAPLPAALVEWLREILP
                     GKTTAELYMAIGCQKHAKTESYREYLVYLQGCNEQFIEAPGIRGMVMLVFTLPGFDRV
                     FKVIKDKFAPQKEMSAAHVRACYQLVKEHDRVGRMADTQEFENFVLEKRHISPALMEL
                     LLQEAAEKITDLGEQIVIRHLYIERRMVPLNIWLEQVEGQQLRDAIEEYGNAIRQLAA
                     ANIFPGDMLFKNFGVTRHGRVVFYDYDEICYMTEVNFRDIPPPRYPEDELASEPWYSV
                     SPGDVFPEEFRHWLCADPRIGPLFEEMHADLFRADYWRALQNRIREGHVEDVYAYRRR
                     QRFSVRYGEMLF"
     gene            complement(6719..>6964)
                     /locus_tag="JN125_003545"
     CDS             complement(6719..>6964)
                     /locus_tag="JN125_003545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873181.1"
                     /translation="HARLFGFTAEDIMDFWQHKAPQKYSAFELAFEFGHRVIAELILN
                     TLNKMAESFGFTDNPRYIAEKNYMEALLKKASPHTVR"
BASE COUNT         1696 a         1802 c         1793 g         1673 t
ORIGIN      
        1 tcggaagact gggccttttt gcgttggtga aaaaaatgcc gggtgcgacg ctggcgcgtc
       61 ttctccagcc tgggcaggca cggcaggggc ggcttattcc cccacatacg ccagattcag
      121 caacggatac ggtttcccca aatcgtccac ctcagagcgt cccgtaacct taaaacccac
      181 cttcttatag aacccaaccg cctgctcatt ttgctcatta acgttggttg tcagttccgg
      241 tgccatcgag agcgcatgct ccaccagcat ccgacccacg ccgcagccgc acacatcagg
      301 atcgataaac agcgcatcca tatgctgccc acttaacaac ataaacccaa ccggctgatc
      361 ccgttcatta accgcgaccc acaacggcgc ttccggcagg aaggaacgaa ctagctagca
      421 cctccagctc ggcccgatac tctgctgata aaaaatcgtg tgtggcatcg acagatcgac
      481 accaaatcgc aacgagttcc tccccttcct catgccgtga gcggcgaata ctaataacca
      541 ttttctctcc ttttagtcat tcttatattc taacgtagtc ttttccttga aactttctca
      601 ccttcaacat gcaggctcga cattggcaaa ttttctggtt atcttcagct atctggatgt
      661 ctaaacgtat aagtgtatgt agtgaggtaa tcaggttatg ccgattcgtg tgccggacga
      721 gctacccgcc gtcaatttct tgcgtgaaga aaacgtcttt gtgatgacaa cttctcgtgc
      781 gtctggtcag gaaattcgtc cacttaaggt tctgatcctt aacctgatgc cgaagaagat
      841 tgaaactgaa aatcagtttc tgcgcctgct ttcaaactca cctttgcagg tcgatattca
      901 gctgttgcgc atcgattccc gtgaatcgcg caacacgccc gcagagcatc tgaacaactt
      961 ctactgtaac tttgaagata ttcaggaaca gaactttgac ggtctgattg taaccggtgc
     1021 gccgctgggc ctggtggagt ttaatgatgt cgcttactgg ccgcagatca aacaggtgct
     1081 ggagtggtcg aaagatcacg tcacctcgac gctgtttgtc tgctgggcgg tacaggccgc
     1141 gctcaatatc ctctacggca ttcctaagca aactcgcacc gacaaactct ctggcgttta
     1201 cgagcatcat attctccatc ctcatgcgct tctgacgcgt ggctttgatg attcattcct
     1261 ggcaccacat tcgcgctatg ctgactttcc ggcagcgttg attcgtgatt acaccgatct
     1321 ggaaattctg gcagagacgg aagaagggga tgcatatctg tttgccagca aagataagcg
     1381 cattgccttt gtgacgggcc atcccgaata tgatgcgcaa acgctggcgc aggaatattt
     1441 ccgcgatgtg gaagccggac tagacccgga agtaccgtat aactatttcc cgcacaatga
     1501 tccgcaaaat acaccgcgag cgagctggcg tagtcacggt aatttgctgt ttaccaactg
     1561 gctcaactat tacgtctatc agatcacgcc atacgatcta cggcacatga atccaacgct
     1621 ggattaatct tctgtgatag tcgagcgtta agcgattcag caccttacct caggcacctt
     1681 cgggtgcctt ttttatttcc gaaacgcacc tcaggaggtg aataaatttt attcacattg
     1741 ttatcaataa gttatcaaat atttttaatt aaaatggaaa ttgtttttga ttttgcattt
     1801 taaatgagtg gtcttagttg tgctgaacga aaagcgcaca acgatccttc gttcacagtg
     1861 gggaagtttt cggatccatg acgaggagct gcacgatgac tgaacaggca acaacaaccg
     1921 atgaactggc tttcacaagg ccgtatggcg agcaggagaa gcaaattctt actgccgaag
     1981 cggtagaatt tctgactgag ctggtgacgc attttacgcc acaacgaaat aaacttctgg
     2041 cagcgcgcat tcagcagcag caagatattg ataacggaac gttgcctgat tttatttcgg
     2101 aaacagcttc catttgcgat gctgattgga aaattcgcgg gattcctgcg gacttagaag
     2161 accgccgcgt agagataact ggcccggtag agcgcaagat ggtgatcaac gcgctcaacg
     2221 ccaatgtgaa agtctttatg gccgatttcg aagattcact ggccccggac tggaacaaag
     2281 tgatcgacgg gcaaattaac ctgcgtgatg cagttaacgg taccatcagc tataccaatg
     2341 aagcaggcaa aatttaccag ctcaagccca atccagcggt tttgatttgt cgggtacgcg
     2401 gtctgcactt gccggaaaaa catgtcacct ggcgtggtga ggcaatcccc ggcagcctgt
     2461 ttgattttgc gctctatttc ttccacaact atcaggctct gttggcaaag ggcagtggtc
     2521 cctatttcta tctgccgaaa acccagtcct ggcaggaagc ggcctggtgg agcgaagtct
     2581 tcagctatgc agaagatcgc tttaatctgc cgcgcggcac catcaaggcg acgttgctga
     2641 ttgaaacgct gcccgccgtg ttccagatgg atgaaatcct tcacgcgctg cgtgaccata
     2701 ttgttggtct gaactgcggt cgttgggatt acatcttcag ctatatcaaa acgttgaaaa
     2761 actatcccga tcgcgtcctg ccagacagac aggcagtgac gatggataaa ccattcctga
     2821 atgcttactc acgcctgttg attaaaacct gccataaacg cggtgctttt gcgatgggcg
     2881 gcatggcggc gtttattccg agcaaagatg aagagcacaa taaccaggtg ctcaacaaag
     2941 taaaagcgga taaatcgctg gaagccaata acggtcacga tggcacatgg atcgctcacc
     3001 caggccttgc ggatacggca atggcggtat tcaacgacat tctcggctcc cgtaaaaatc
     3061 agcttgaagt gatgcgcgaa caagacgcgc cgattactgc cgatcagcta ctggcacctt
     3121 gtgacggtga acgcaccgaa gaaggtatgc gcgcaaatat tcgcgtagcc gtgcagtaca
     3181 tcgaagcgtg gatctctggc aacggctgtg tgccgattta tggcctgatg gaagatgcgg
     3241 cgacggctga aatttcccgt acctcaatct ggcagtggat ccatcatcaa aaaatgttga
     3301 gcaatggcaa accggtaact aaagccttgt tccgccagat gctgggcgaa gagatgaaag
     3361 tcattgccag cgaactgggc gaagaacgtt tctcccaggg gcgttttgac gatgccgcac
     3421 gcttgatgga acagatcacc acttccgatg agttaattga tttcctgacc ctgccaggct
     3481 actgcctgtt agcgtaaacc accacataac tatggagcat ctgcacatga aaacccgtac
     3541 acaacaaatt gaagaattac agaaagagtg gactcaaccg cgttgggaag gcattactcg
     3601 cccatacagc gcggaagatg tggtgaaatt acgcggttca gtcaatcctg aatgcaccct
     3661 ggcgcaactg ggcgcggcga gaatgtggcg tctgctgcat ggcgagtcga aaaaaggcta
     3721 catcaacagc ctcggtgcac tgactggcgg tcaggcgctg caacaggcga aagcgggtat
     3781 tgaagcagtc tatctgtcgg gatggcaggt agcggcggac gctaacctgg cggccagcat
     3841 gtatccggat cagtcgctct atccggcaaa ctcggtgcca gctgtggtgg agcggatcaa
     3901 caatactttc cgccgtgcgg atcagatcca atggtccgcg ggcattgagc cgggcgatcc
     3961 gcgctatgtc gattacttcc tgccgatcgt tgccgatgcg gaagccggtt ttggcggtgt
     4021 cctgaatgcc tttgaactga tgaaagcgat gattgaagcc ggtgcagcgg cagttcactt
     4081 cgaagatcag ctggcgtcag tgaagaaatg cggtcacatg ggcggcaaag ttttggtgcc
     4141 aactcaagaa gctattcaga aactggtcgc ggcgcgtctg gcagctgacg tgacgggcgt
     4201 tccaacccta ctggttgctc gtaccgatgc cgatgcagcg gatctgatca cctccgattg
     4261 cgacccgtat gacagcgaat ttattaccgg cgagcgtacc agtgaaggct tcttccgtac
     4321 tcatgcgggc attgagcaag cgatcagccg tggcctggcg tatgcgccat atgctgacct
     4381 ggtctggtgt gaaacctcca cgccggatct ggaactggcg cgtcgctttg cacaagctat
     4441 ccacgcgaaa tatccgggca aactgctggc ttataactgc tcgccgtcgt tcaactggca
     4501 gaaaaacctc gacgacaaaa ctattgccag cttccagcag cagctgtcgg atatgggcta
     4561 caagttccag ttcatcaccc tggcaggtat ccacagcatg tggttcaaca tgtttgacct
     4621 ggcaaacgcc tatgcccagg gcgagggtat gaagcactac gttgagaaag tgcagcagcc
     4681 ggaatttgcc gccgcgaaag atggctatac cttcgtatct caccagcagg aagtgggtac
     4741 aggttacttc gataaagtga cgactattat tcagggcggc acgtcttcag tcaccgcgct
     4801 gaccggctcc actgaagaat cgcagttcta agcaacaaca accgttgctg actgtaggcc
     4861 ggataaggcg ttcacgccgc atccggcaat cggtgcacga tgcctgatgc gacgcttgcg
     4921 cgtcttatca tgcctacagc cgttgccgaa cgtaggccgg ataaggcatt tacgccgcat
     4981 ccggcaattc tctgctcctg atgagggcgc taaatgccgc gtggcttgga attactgatt
     5041 gctcaaacca ttttgcaagg cttcgacgct cagtatggtc gattcctcga agtgacttcc
     5101 ggggcgcagc agcgtttcga acaggccgac tggcatgctg tccagctggc gatgaaaaac
     5161 cgtatccatc tttacgatca tcacgttggt ctggtcgtgg agcaactgcg ctgcattact
     5221 aacggccaaa gtacggacgc ggcattttta ctgcgcgtta aagagcatta cacgcggctg
     5281 ttgccggatt acccgcgctt cgagattgcg gagagctttt ttaactccgt gtactgtcgg
     5341 ttatttgacc accgctcgct tactcccgag cggcttttta tctttagctc tcagccagag
     5401 cgcagctttc gtaccattcc ccgcccgctg gcgaaagact ttcaccccga tcacggctgg
     5461 gaatctctac tgatgcgcgt tatcagcgac ctgccgctgc gcctgcgctg gcagaataaa
     5521 agccgtgaca ttcattacat cattcgccat ctgacggaaa cgctggggac agacaacctc
     5581 gcggaaagtc atttacaggt ggcgaacgaa ctgttttacc gcaataaagc cgcctggctg
     5641 gtgggcaaac tgatcacgcc ttccggcacg ttgcccttct tactgccgat ccaccagacg
     5701 gacgacggcg agttatttat tgatacctgc ctgacgacga ccgccgaagc gagcattgtt
     5761 tttggctttg cgcgttctta ttttatggtt tatgcaccgc tgcccgcagc gctggtcgag
     5821 tggctacggg aaattctgcc aggtaaaacc actgctgaat tgtatatggc tatcggctgc
     5881 cagaagcacg ccaaaaccga aagctaccgc gaatatctcg tttatctaca gggctgtaat
     5941 gagcagttca ttgaagcgcc gggtattcgt ggaatggtga tgttggtgtt tacgctgccg
     6001 ggctttgatc gggtattcaa agtcatcaaa gacaagttcg cgccgcagaa agagatgtct
     6061 gccgctcacg ttcgtgcctg ctatcaactg gtgaaagagc acgaccgtgt gggccgaatg
     6121 gcggacaccc aggagtttga aaactttgtg ctggagaagc ggcatatttc cccggcatta
     6181 atggaattac tgctccagga agcagcggaa aaaatcaccg atcttggtga gcagattgta
     6241 attcgccatc tctatatcga gcggcggatg gtgccgctca atatctggct ggaacaagtg
     6301 gaaggtcagc agttgcgcga cgccattgaa gaatacggta acgctattcg ccagcttgcc
     6361 gctgctaaca tttttcctgg cgacatgctg tttaaaaact tcggtgtcac ccgtcacggg
     6421 cgtgtggttt tttatgatta cgatgaaatt tgctacatga cggaagtgaa tttccgcgac
     6481 atcccgccgc cgcgctatcc ggaagacgaa cttgccagcg aaccgtggta cagcgtctcg
     6541 ccgggcgatg ttttcccgga agagtttcgc cactggctat gcgccgaccc gcgtattggt
     6601 ccgctgtttg aagagatgca cgccgacctg ttccgcgctg attactggcg cgcactacaa
     6661 aaccgcatac gtgaagggca tgtggaagat gtttatgcgt atcggcgcag gcaaagattt
     6721 agcgtacggt atggggagat gcttttttga gtaaagcttc catataattt ttctccgcaa
     6781 tgtatcgagg gttatccgta aagccaaagc tttcagccat cttatttaat gtattaagga
     6841 ttaattcagc aataacccgg tgaccaaatt caaaagccaa ctcaaaggca gagtattttt
     6901 gtggcgcttt gtgttgccaa aaatccataa tatcttcagc ggtaaatcca aacaggcgtg
     6961 catg
//
LOCUS       DADMHM010000202         6896 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.205, whole genome shotgun sequence.
ACCESSION   DADMHM010000202 DADMHM010000000
VERSION     DADMHM010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6896)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6896)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6896
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.205"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(164..814)
                     /gene="zinT"
                     /locus_tag="JN125_003546"
     CDS             complement(164..814)
                     /gene="zinT"
                     /locus_tag="JN125_003546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-binding protein ZinT"
                     /protein_id="HAY8873182.1"
                     /translation="MAIRLHKLAVALGVFIVSAPAFSHGHHSHGKPLTEVEQKAANGV
                     FDDANVQNRTLSDWDGVWQSVYPLLQSGKLDPVFQKKADADKTKTFAEIKDYYHKGYA
                     TDIEMIGIEDGIVEFHRNNETTSCKYDYDGYKILTYKSGKKGVRYLFECKDPESKAPK
                     YIQFSDHIIAPRKSSHFHIFMGNDSQQSLLNEMENWPTYYPYQLSSEEVVEEMMSH"
     gene            complement(1071..1706)
                     /gene="msrQ"
                     /locus_tag="JN125_003547"
     CDS             complement(1071..1706)
                     /gene="msrQ"
                     /locus_tag="JN125_003547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase
                     heme-binding subunit MsrQ"
                     /protein_id="HAY8873183.1"
                     /translation="MRLTAKQVTWLKVSLHLAGLLPFLWLVWAINHGGLGADPVKDIQ
                     HFTGRTALKFLLATLLITPLASYAKQPLLIRTRRLLGLWCFAWATLHLTSYALLELGV
                     NNLALLGKELITRPYLTLGIISWVILLALAFTSTQAMQRKLGKHWQQLHNFVYLVAIL
                     APIHYLWSVKIISPQPLIYAGLAVLLLALRYKKLRSLFNRLRKQVHNKLSV"
     gene            complement(1707..2711)
                     /gene="msrP"
                     /locus_tag="JN125_003548"
     CDS             complement(1707..2711)
                     /gene="msrP"
                     /locus_tag="JN125_003548"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HAY8873184.1"
                     /translation="MKKNQFLKESDVTAESVFFMKRRQVLKALGISAAALSLPHAAHA
                     DLLSWFKGNDRPPAPAGKPLEFSKPAAWQNNLPLTPVDKVSGYNNFYEFGLDKADPAA
                     NAGSLKTDPWTLKISGEVAKPLTLDHDDLTRRFPLEERIYRMRCVEAWSMVVPWIGFP
                     LHKLLALAEPTSNAKYVAFETIYAPEQMPGQQDRFIGGGLKYPYVEGLRLDEAMHPLT
                     LMTVGVYGKALPPQNGAPVRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLAAPDEYG
                     FYANVNPHVDHPRWSQATERFIGSGGILDVQRQPTLLFNGYADQVASLYRGLDLRENF
                     "
     gene            complement(2820..3233)
                     /gene="hiuH"
                     /locus_tag="JN125_003549"
     CDS             complement(2820..3233)
                     /gene="hiuH"
                     /locus_tag="JN125_003549"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HAY8873185.1"
                     /translation="MLKRYLVLSVATAAFSLPSLVYAAQQNILSVHILNQQIGKPAAD
                     VTVTLEKKSDNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDYFKKQNLES
                     FFPEIPVEFHINKVNEHYHVPLLLSQYGYSTYRGS"
     gene            3366..4037
                     /gene="hprR"
                     /locus_tag="JN125_003550"
     CDS             3366..4037
                     /gene="hprR"
                     /locus_tag="JN125_003550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707854.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor HprR"
                     /protein_id="HAY8873186.1"
                     /translation="MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDD
                     YALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPF
                     SFSELLARVRAQLRQHHALNSTLEISGLRMDSVSQSVSRDNISITLTRKEFQLLWLLA
                     SRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF
                     VAVKK"
     gene            4037..5395
                     /locus_tag="JN125_003551"
     CDS             4037..5395
                     /locus_tag="JN125_003551"
                     /EC_number="2.7.13.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal sensor histidine kinase"
                     /protein_id="HAY8873187.1"
                     /translation="MKRLSITVRLTLLFILLLSVAGAGIVWTLYNGLASELKWRDDTT
                     LINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHGDGINKIVNRTNVSDGMLN
                     NIPASETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKIN
                     SIIICIVAIVLCSVLSPLLIRTGLREIKKLSGVTEALNYNDSREPVEVSVLPRELKPL
                     GQALNKMHQALVKDFERLSQFADDLAHELRTPINALLGQNQVTLSQTRSIAEYQKTIA
                     GNIEELENISRLTENILFLARADKNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICF
                     KVECNQQIFADKILLQRMLSNLIVNAIRYSPEKSRIHITSFLDTNGYLNIDVASPGTK
                     IHEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSATYHYLNKHNVFRIMLPQ
                     RN"
     gene            complement(5503..6354)
                     /gene="hchA"
                     /locus_tag="JN125_003552"
     CDS             complement(5503..6354)
                     /gene="hchA"
                     /locus_tag="JN125_003552"
                     /EC_number="3.5.1.124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein deglycase HchA"
                     /protein_id="HAY8873188.1"
                     /translation="MTVQTSKNPQVDIAEDNAFFPSEYSLSQYTSPVSDLDGVDYPKP
                     YRGKHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLMT
                     KFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGALIG
                     LPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHGDNPLNGYSICAFPDAADKQTP
                     EIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKVLTGDSPFAANALGKLAAQE
                     MLAAYAG"
BASE COUNT         1897 a         1415 c         1637 g         1947 t
ORIGIN      
        1 tccgttattg gttaactcaa tgcgggttag cttattaata tacagacacg tcatagtgat
       61 gagcgtgtct gtagctagct tgcgttcagt ggcgtttgtg gatggaccag tggcagttat
      121 gatgacttac taaagcggca tcgaggcgtt atcatgagaa tactcaatga gacatcattt
      181 cctcgaccac ttcttcgcta ctcaactgat atggataata cgttggccag ttttccattt
      241 catttaataa agattgctgt gaatcattac ccataaaaat gtgaaaatga gatgattttc
      301 gtggtgcaat tatatgatcg ctaaattgta tatatttagg ggctttgctt tcaggatctt
      361 tacattcgaa taagtaacga acgcctttct tgcctgattt ataggtgagt attttgtatc
      421 catcgtaatc atatttacag gatgttgttt cattatttct atggaattca acaatgccgt
      481 cctcaatgcc aatcatctcg atatctgttg cataaccttt gtgataataa tctttaattt
      541 cagcaaatgt tttagtttta tctgcatccg ctttcttctg aaagacgggg tcaagtttgc
      601 cactttgcag taaaggataa acggattgcc agactccatc ccagtcactg agcgttcggt
      661 tttgtacatt ggcatcatca aaaacaccat tagcagcttt ttgttcgacc tctgttaagg
      721 gtttgccgtg tgagtgatga ccatgcgaaa aggcaggagc gctaacaata aagacaccta
      781 acgcaacagc cagtttgtga agacgaatcg ccaaaacagt ttcctccaga gtcattgtat
      841 atgatgtgta atgttatatt gtaacatgtg gcaaaatgca acaactctta ggagatgaga
      901 gcatagtttt ctcaggtgta cttatctatc ttattgaaat aaaatgaatt atattgataa
      961 tttgaggttg atgacaaacg aaacataatc tgatgtgatc tgcgtaggcc ggatagggcg
     1021 ctcgcgccgc atccggcagg gataacgcgt actttgtcgg caatatgaag ttatacagat
     1081 aatttgttgt gaacctgctt gcgtaaccgg ttaaaaaggg aacgcaactt cttataccgt
     1141 aaggctaaaa gtagtacagc cagcccagcg tagatgagcg gctgcggtga aataatcttc
     1201 actgaccaca gataatgtat tggggccagg atcgcgacaa gatagacgaa attatgcaac
     1261 tgttgccagt gcttgccgag ttttcgctgc atcgcctggg ttgaagtaaa cgctaaagca
     1321 agcaaaataa cccagctgat aattcctaac gttaaataag gccgggtaat taactccttg
     1381 cctaataacg ccagattatt cacgcccagc tccagcaatg cgtaactggt taaatgcagt
     1441 gtcgcccagg caaagcacca taagcctaac aggcggcgag tgcgtatcaa taacggctgt
     1501 tttgcgtagc ttgccagagg tgtgattaac aaggtcgcca gcaaaaattt cagtgcagtg
     1561 cgaccggtaa aatgctgaat atctttcacc ggatcggcac ccagtccacc gtgattgatc
     1621 gcccagacca gccagagaaa cggcaacaat ccggcaagat gcaggctaac tttcagccat
     1681 gtcacctgtt ttgctgtcag acgcattcag aaattctccc gcaaatccag gccacgatac
     1741 agcgatgcca cctggtcggc gtaaccatta aacagtagcg ttggctggcg ctgaacatcg
     1801 aggatgccgc ctgaaccaat aaatcgttcg gtagcctgtg accagcgcgg gtgatcaaca
     1861 tgcggattaa cgttggcgta aaaaccgtat tcgtcaggcg ctgccagatt ccaggtggtt
     1921 ggcggacgct cgcgggtcag cttaatactg actatcgatt taatcccttt aaagccatat
     1981 ttccacggca caatcagtcg taccggcgcg ccattttgtg gcggtaacgc cttgccataa
     2041 acacccacgg tcatcagtgt gagcggatgc attgcttcgt cgagacgcaa tccttcgaca
     2101 taaggatatt tcagcccgcc gccgataaag cggtcctgct ggcctggcat ttgttccggt
     2161 gcataaattg tttcgaaagc gacatacttc gcattgctgg tgggttcggc aagcgccagc
     2221 aatttgtgca gcggaaaacc aatccacggc accaccatcg accatgcctc cacgcagcgc
     2281 atacgataaa tacgctcttc cagcgggaag cgacgggtta aatcatcgtg atcgagggtc
     2341 aatggttttg ccacttcgcc gctgattttc agtgtccatg gatcggtttt caggctacca
     2401 gcattagcgg cgggatcggc tttatccagc ccgaattcat agaagttgtt ataaccggag
     2461 actttatcta ctggcgtcag tggcaggtta ttttgccagg cggcaggctt gctgaactcc
     2521 agcggttttc cggcgggggc gggcgggcga tcgttccctt taaaccagct aagcagatcg
     2581 gcatgcgcag cgtgaggcaa agaaagtgca gctgcactga tgcccagtgc ttttaacacc
     2641 tgccgacgct tcataaagaa taccgactcg gccgtaacat ctgattcttt taaaaattga
     2701 ttctttttca taagccatca cacttttttg tcgttagcca gcaagagccg tttactgtta
     2761 atctgtcagg gagtgtcctc cctaacagta gcagagatct gcttttacat atttatgcat
     2821 taactgccac gataggttga atacccatat tggctaagta ataaaggcac atgataatgc
     2881 tcgttcactt tattaatatg aaattcaacg gggatctcag ggaagaaact ttcaagattt
     2941 tgtttcttga aatagtcccc ggttttaaat acgacacggt aatcgcccgt agttgcagtt
     3001 tgctcgggcc acagtgcctt aattcgtcca tccttatctg ttttggcggt attaagttgt
     3061 aaccagccgt tgtccgattt cttttcaaga gtgactgtca cgtcggcagc gggttttcct
     3121 atttgctggt tcaaaatgtg cacgctaaga atgttttgtt gtgcggcata aaccaaagaa
     3181 ggtaatgaaa atgctgccgt tgctaccgag agtactaaat aacgctttaa catgtttata
     3241 tccttgtcat gtgaatgagt tttgaggata gcgaaaaaat gtccagggta accttacagc
     3301 agcattacaa ttttgtaatg aaccaggctg tttctataac atatgattta tggcatatta
     3361 ttttcatgaa gattttactt attgaagata atcaaaggac ccaggaatgg gtaacacaag
     3421 ggctttccga agcgggttat gtcattgatg ccgtttctga tggcagagat gggctttatc
     3481 ttgcgctgaa ggatgattat gcattgatca ttctggatat tatgcttccg ggtatggatg
     3541 gctggcagat cttacaaacg ttaagaacag caaagcaaac ccctgttatt tgccttactg
     3601 caagggattc tgtcgatgac agagtcagag ggctggacag tggagcaaat gattatctgg
     3661 taaaaccttt ttcattttct gagttgctgg caagggttcg ggcacaatta aggcaacatc
     3721 acgctttgaa ttcaacatta gaaatcagtg gcttaagaat ggactctgta agtcaaagtg
     3781 tgagcaggga caatatcagt attacactga cgcgcaagga gtttcagtta ctttggctac
     3841 tggcctccag agctggcgaa attataccca gaacggttat tgcgagtgaa atttggggaa
     3901 tcaactttga tagtgatacc aatacggtgg atgtcgccat tcgcaggctc cgcgcaaaag
     3961 ttgatgatcc ttttcctgaa aagctaatcg ccacaatacg ggggatgggc tattcattcg
     4021 tagcggtaaa aaaataatga aaagattgtc tataaccgtc cgtttaacct tgctttttat
     4081 attgctgctg tctgttgctg gcgctggaat tgtatggact ctctataatg gcctggcaag
     4141 tgagttgaaa tggcgcgatg atacaacact cattaaccgg acagcgcaga tcaagcagtt
     4201 gttaattgat ggggtaaatc cagatacgtt acctgtgtac tttaaccgga tgatggatgt
     4261 tagtcaggat atcttgatca ttcatggtga tggtatcaat aaaattgtta accggacaaa
     4321 tgtcagtgat ggcatgttaa ataacatacc tgctagtgag acaatcagcg cagctggcat
     4381 ttacagaagc attattaatg acactgagat tgatgcttta cgaattaata ttgatgaagt
     4441 ttcgccatca ttaacggtta ctgtggctaa attggcttca gccagacata acatgcttga
     4501 acagtataaa attaatagca ttataatttg cattgtcgcc attgtacttt gctcagtatt
     4561 aagtccgctg ttaatcagaa cgggattacg agagatcaaa aagttgagtg gtgtaacgga
     4621 agcgctgaat tataacgata gccgggagcc tgttgaggtt agcgtattac cgagagaact
     4681 aaaacctctt gggcaggcgt tgaataaaat gcatcaagcc ttagtcaaag attttgaacg
     4741 cctaagtcaa tttgctgacg atctcgctca tgaacttaga acgcccatta atgcattact
     4801 gggtcagaat caggttacgc tcagtcaaac cagaagtatc gctgaatatc aaaaaacaat
     4861 tgccggtaac attgaagagc tggaaaatat ttcgcggtta acagagaaca tactgtttct
     4921 tgcccgggca gataaaaaca atgttttggt gaaactggac tcgctttctc tcaataagga
     4981 agtcgaaaat ttgttggatt atcttgaata cctttcagac gagaaagaga tttgctttaa
     5041 ggtcgagtgc aatcagcaaa tctttgcgga taaaatttta ctgcaacgaa tgttatcgaa
     5101 tcttattgtt aatgccatta gatattcacc agaaaaatcg cgtattcata taaccagttt
     5161 tcttgatacc aacggctatc ttaatattga tgtcgccagt cctggaacga aaattcatga
     5221 gcctgaaaaa ctcttccgta gattttggcg gggagataat tcgcgtcatt ccgtaggtca
     5281 gggacttggt ctttctttag tcaaagcgat tgccgaatta catgggggaa gtgctacgta
     5341 tcactatctc aataaacata atgtgttccg gattatgtta ccgcaaagaa attaacatag
     5401 ggcttcagta cgccataaat caaccatgaa aaaacgcagc cacgtcgtga gtattaacgt
     5461 ggctgcgatt gattatgcgc ttacattcat acgtaacagg gattaacccg cataagctgc
     5521 cagcatttcc tgcgccgcca gtttacccaa cgcattcgct gcgaaaggac tgtcgccggt
     5581 gagaacttta cggtccttat gtactcgccc ggtgatgtcg tcattaataa tgttcatgcc
     5641 cattttcttc agctcttcgc cgaagtacca ggtgagatga cccggcatat agcctatctc
     5701 tggcgtttgt ttgtctgcgg cgtctgggaa tgcgcaaatg gaataaccat tcagtgggtt
     5761 atcgccgtgg cgaagcgcca gaaaagccgc cgggccgtgg caaagggaga taacaaaacg
     5821 gtcatttttg attgcccact gtaaagcggc agctacgtcc tggctttcag gtaaaccaat
     5881 aagtgcgcca tgaccaccag gaacaaagat tgctgcatat tcgctatcag cgttgaggct
     5941 ggcgacaaca tccgcgagtt tcttcggatt gcggaacaac gatttatgct gctcaaagaa
     6001 tggcattact ttttcatctt tgtgcggcat agcccagtat tcaaacttgg tcatcagacc
     6061 ggaaatggtc gccacttcga attcgaaacc tgcagcatgg agatgataca acggcagcaa
     6121 cgtttcaatc ggatggttac cggtcgagaa cagttttccg ttatcggttg gcaaataacg
     6181 ttcgtccgcg gcgatcacca gaattttatg cttaccgcga tacggttttg gatagtccac
     6241 gccatcaaga tcagagacgg gactggtata ttggctaagc gaatattctg aagggaagaa
     6301 cgcattatct tcagcaatat cgacctgcgg atttttactt gtttgaacag tcatagtgta
     6361 ttccttattg ttgcttagtt agggtagtca ctatatttgc gactgagctg gtcgctattt
     6421 ttaactaggc tggaaaattg agtcaatata tcgaaagcgg tagtcggcgg gtgtaagtat
     6481 gtaatgatga tgctgcactg gtgttgaata ttattcacgc caaattttcc ttattgagca
     6541 acgtcgtcgc aagtggcctc aatgatttta gaccattatc agagatgcgg ggcggtgggg
     6601 agagatttag tgatgtggaa tattgtggtg ctgatgaata tttatatcgc ggattggtag
     6661 agaaaaagct tatttcatgc actatttttg caaagatttc tatttgggaa gcgtgtttgt
     6721 tacggggtaa ttcatcagaa tgtgcatttg gggtgttggc tggaagagtc gctggtagat
     6781 gttattgtgg caggaggggc agggtaaggt gctgtatcga tatgctttgg caattgcgtg
     6841 tgccgcagat ggagatgaaa tgccaataaa aaagcctgag ttcgatgagg gacgaa
//
LOCUS       DADMHM010000203         6839 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.206, whole genome shotgun sequence.
ACCESSION   DADMHM010000203 DADMHM010000000
VERSION     DADMHM010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6839)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6839)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6839
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.206"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..298
                     /locus_tag="JN125_003553"
     CDS             <1..298
                     /locus_tag="JN125_003553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313164.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HAY8873189.1"
                     /translation="LPYLFLALAFPFFKARQDLDRPFVIFKTRMSAMIATVVVVLVVT
                     FANVFTIIPPVVEVGDWDSTLWMIGGPVFFSLLAMAIYQNYCSRMANKPEVALD"
     gene            complement(449..3772)
                     /gene="mscM"
                     /locus_tag="JN125_003554"
     CDS             complement(449..3772)
                     /gene="mscM"
                     /locus_tag="JN125_003554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="miniconductance mechanosensitive channel MscM"
                     /protein_id="HAY8873190.1"
                     /translation="MRLIITFLIAWCLSWGAYAATAPDSKQITQELEQAKAAKPAQPE
                     VVEALQSALNALEERKGSLERIKQYQQVIDNYPKLSATLRAQLNNMRDEPRSVSPGMS
                     TDALNQEILQVSSQLLDKSRQAQQEQERTREIADSLNQLPQQQTDARRQLNEIERRLG
                     TLTGNTPLNQAQNFALQSDSASLKALVDELELAQLSANNRQELARLRSELAEKESQQL
                     DAYLQALRNQLNSQRQLEAERALESTELLAENSADLPKDIVAQFKINRELSAALNQQA
                     QRMDLVASQQRQAASQTLQVRQALNTLREQSQWLGSSNLLGEALRAQVARLPEMPKPQ
                     QLDTEMAQLRVQRLRYEDLLNKQPLLRQIHQADGQPLTAEQNRILEAQLRTQRELLNS
                     LLQGGDTLLLELTKLKVSNGQLEDALKEVNEATHRYLFWTSDVRPMTIAWPLEIAQDL
                     RRLISLDTFSQLGKASVMMLTSKETILPLFGALILVGCSIYSRRYFTRFLERSAAKVG
                     KVTQDHFWLTLRTLFWSILVASPLPVLWMTLGYGLREAWPYPLAVAIGDGVTATVPLL
                     WVVMICATFARPNGLFIAHFGWPRERVSRGMRYYLMSIGLIVPLIMALMMFDNLDDRE
                     FSGSLGRLCFILICGALAVVTLSLKKAGIPLYLNKEGSGDNITNHMLWNMMIGAPLVA
                     ILASAVGYLATAQALLARLETSVAIWFLLLVVYHVIRRWMLIQRRRLAFDRAKHRRAE
                     MLAQRARGEEEAHHHSSPEGAIEVDESEVDLDAISAQSLRLVRSILMLIALLSVIVLW
                     SEIHSAFGFLENISLWDVTSTVQGVESLEPITLGAVLIAILVFIITTQLVRNLPALLE
                     LAILQHLDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGVGLGFG
                     LQEIFANFISGLIILFEKPIRIGDTVTIRDLTGSVTKINTRATTISDWDRKEIIVPNK
                     AFITEQFINWSLSDSVTRVVLTIPAPADANSEEVTEILLTAARRCSLVIDNPAPEVFL
                     VDLQQGIQIFELRIYAAEMGHRMPLRHEIHQLILAGFHAHGIDMPFPPFQMRLESLNG
                     KQTGRTLTSAGKGRQAGSL"
     gene            complement(3794..4762)
                     /gene="psd"
                     /locus_tag="JN125_003555"
     CDS             complement(3794..4762)
                     /gene="psd"
                     /locus_tag="JN125_003555"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313166.1"
                     /note="Phosphatidylserine decarboxylase is synthesized as
                     a single chain precursor. Generation of the pyruvoyl
                     active site from a Ser is coupled to cleavage of a Gly-Ser
                     bond between the larger (beta) and smaller (alpha chains).
                     It is an integral membrane protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HAY8873191.1"
                     /translation="MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKY
                     YKVDMKEAQKPDTASYRTFNEFFVRPLRDEVRPIDTDPNVLVMPADGVISQLGKIEED
                     KILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYV
                     PGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTIT
                     PPREGIIKRWTWPAGENDGSVALLKGQEMGRFKLGSTVINLFAPGKVNLVEQLESLSV
                     TKIGQPLAVSTETFVTPDAEPAPLPAEEIEAEHDASPLVDDKKDQV"
     gene            complement(4859..5911)
                     /gene="rsgA"
                     /locus_tag="JN125_003556"
     CDS             complement(4859..5911)
                     /gene="rsgA"
                     /locus_tag="JN125_003556"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313167.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="small ribosomal subunit biogenesis GTPase RsgA"
                     /protein_id="HAY8873192.1"
                     /translation="MSKNKLSKGQQRRVNANHQRRLKTSKEKPDYDDNLFGEPDEGIV
                     ISRFGMHADVESADGDVHRCNIRRTIRSLVTGDRVVWRPGKPAAEGVNVKGIVEAVHE
                     RTSVLTRPDFYDGVKPIAANIDQIVIVSAILPELSLNIIDRYLVACETLQIEPIIVLN
                     KIDLLDDEGMAFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGV
                     GKSSLLNALLGLQKEILTNDVSDNSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGLW
                     HLEPEQITQGFVEFHDYLGLCKYRDCKHDTDPGCAIREAVEEGKIAETRFENYHRILE
                     SMAQVKTRKNFSDTDD"
     gene            6006..6551
                     /gene="orn"
                     /locus_tag="JN125_003557"
     CDS             6006..6551
                     /gene="orn"
                     /locus_tag="JN125_003557"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418586.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoribonuclease"
                     /protein_id="HAY8873193.1"
                     /translation="MSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGP
                     TIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKS
                     PICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQA
                     MDDIRESVAELAYYREHFIKL"
     gene            6762..6837
                     /locus_tag="JN125_003558"
     tRNA            6762..6837
                     /locus_tag="JN125_003558"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6795..6797,aa:Gly,seq:gcc)
BASE COUNT         1576 a         1837 c         1842 g         1584 t
ORIGIN      
        1 gcttccttac ctgttcctcg cgctggcttt cccattcttt aaagcacgtc aggatctcga
       61 cagaccattt gtgattttca aaacgcgtat gtcggcaatg attgcgacgg tggttgtcgt
      121 actggtggtg acatttgcga acgtcttcac cattattccg cctgtggttg aagtcggaga
      181 ctgggacagc acattgtgga tgattggcgg ccctgtcttc ttctcgctgt tagcgatggc
      241 gatttaccag aactattgca gtcgcatggc gaataaacct gaggtagctc tcgactgatc
      301 atatgaaatc ctgcaactca tcgtctctcc ggcgatgagt tgtcaggaag taatgcgtat
      361 ggatgatact ctccagggcc ggtgataact gaagatgatg ttaagctgct aaatgagcca
      421 cgttgacatc atttggcagc ttcatgcatt acaaacttcc cgcctgacga cctttgcccg
      481 cagacgtcag cgttctcccc gtttgtttac cgttgaggct ttccagacgc atctggaagg
      541 gcgggaatgg catatcgata ccgtgggcat ggaagccagc cagaatcagc tggtggatct
      601 catggcgtag cggcatacgg tgacccatct cagcggcata aatacgcagc tcgaaaatct
      661 gaatcccttg ttgcagatcc accaggaaga cttccggtgc cgggttgtcg atcaccagcg
      721 agcagcgacg cgctgcggtg agcaggattt ccgtcacttc ttcactgttg gcatcagcag
      781 gggccggaat cgtcaacact acgcgcgtaa ccgagtcaga gagcgaccag ttgataaact
      841 gctcggtaat aaacgccttg ttcggcacga ttatctcttt acggtcccag tcgctgatgg
      901 tggtggcgcg ggtgttaatt ttcgtcacgc taccggtgag atcgcgaatt gtcaccgtat
      961 cgccaatgcg aatcggtttt tcgaacagga taatcagacc agagataaag ttggcgaaaa
     1021 tttcctgcaa accaaaaccg agaccaacac cgagcgcggc gaccagccac tgcaatttcg
     1081 accactcaat accaatcatc gagaagccga ccagcccgcc aatcagcatc agcagatatt
     1141 tggtgatggt ggtgatggcg tagcctgtac ccggcgttaa atccaggtgc tgcaaaatcg
     1201 ccagttccag cagcgcgggc aggttgcgca ccagctgcgt ggtgatgata aacaccagaa
     1261 tggcaatcag caccgcaccg agggtaattg gctccagact ttctacgcct tgtaccgtgg
     1321 aggtgacatc ccacagcgaa atattttcga ggaagccgaa agcggaatgg atttctgacc
     1381 acagcacaat gacagaaagc agggcgatca acatcaaaat tgagcgcacc agccgcaagg
     1441 attgcgcact gatggcatcg agatcgactt cgctttcatc gacttcaatt gctccttccg
     1501 ggctactgtg atgatgcgct tcctcttcgc cacgcgcacg ttgcgctaac atctctgccc
     1561 ggcgatgctt cgcccggtca aacgccagcc tgcggcgctg gatcagcatc cagcggcgga
     1621 taacgtgata aaccaccagt agcaggaacc agatggcaac cgaggtttca agcctcgcta
     1681 acagcgcctg tgccgttgcc agataaccca cagccgacgc cagaatggca accaacggcg
     1741 cgccaatcat catgttccac agcatatggt tggtaatgtt gtcgccgctg ccctctttgt
     1801 tgagatacag tgggatcccg gcctttttca ggctgagggt gaccaccgcc agcgcaccgc
     1861 aaatgaggat aaagcaaagc cgtcccagcg aaccggagaa ttcacggtcg tcgaggttat
     1921 cgaacatcat cagcgccata atcagcggca caataagccc gatgctcatc aggtagtagc
     1981 gcatcccacg ggaaacacgt tcgcgcggcc agccaaaatg agcgataaac aagccgttcg
     2041 ggcgggcaaa ggtggcgcaa atcatcacta cccacagcag cggcacggta gccgttacac
     2101 catcgccaat cgcgaccgcc agcggataag gccacgcctc gcgcaagccg taacccagcg
     2161 tcatccacag caccggtaac ggtgacgcga cgagaatcga ccagaaaaga gtgcgcaacg
     2221 tcagccagaa gtgatcctga gtcactttgc caactttcgc cgccgaacgt tcaagaaaac
     2281 gggtgaaata gcggcgcgag taaatactgc aaccgaccag aatcaacgcg ccaaacagcg
     2341 gcaaaattgt ctctttgctg gtcagcatca tcacactggc tttgcccaac tgactgaagg
     2401 tgtccagcga aatgagacga cgcagatcct gggcgatttc cagcggccag gcgatggtca
     2461 tcgggcgcac gtcagaggtc cagaacagat agcggtgcgt tgcttcgttc acctctttca
     2521 gcgcatcctc cagttgcccg ttggagactt tcagcttggt cagttccaat agtagcgtgt
     2581 cgccaccctg caacaatgag ttcagcaact cacgctgagt gcgcagttgt gcttccagaa
     2641 tacggttttg ctcggcggtc agcggctgac cgtcggcctg atggatttgc cgtagcagcg
     2701 gctgtttatt aagcagatcc tcataacgta accgttgcac acgcaactgc gccatttcgg
     2761 tatcaagctg ttgtggtttt ggcatttctg gcagccgtgc cacctgcgcc cgcagcgctt
     2821 cgccgagcag attggacgat cccagccatt gcgactgttc acgcagcgta ttcaacgcct
     2881 gccggacctg taacgtctgg ctggcagcct gacgctgttg cgaggcaacg agatccatcc
     2941 gctgcgcctg ttgattcaaa gccgccgata gttcgcggtt aattttgaat tgcgcgacga
     3001 tatctttcgg caaatcggcg ctgttttctg ccagcaattc ggtactttcc agcgcccgct
     3061 ccgcctcaag ctgacgttgg ctgtttaatt gattacgcaa ggcctgcaaa tacgcatcca
     3121 gttgctggct ctctttttcc gccagctctg agcgtaagcg cgctaattcc tggcggttat
     3181 tggcagacag ctgcgccagc tccagttcat caacgagcgc cttaagactt gcagagtcag
     3241 actgcaacgc gaaattttgt gcctgattga gcggagtatt gccggtaagc gttcccaggc
     3301 ggcgctcgat ctcatttaac tgacggcggg cgtcggtttg ctgttgcggc agttgattca
     3361 gcgaatcggc aatctcgcgg gtgcgctcct gctcttgctg ggcctgacgg cttttatcca
     3421 gcaactggct gctgacctgg agaatttcct gattcagcgc gtcggtagac attcccggcg
     3481 acacgctgcg cggctcgtca cgcatgttgt ttaattgtgc gcgcagagta gcggagagtt
     3541 tcggataatt atcgataact tgctgatatt gtttgatgcg ctcaagggaa ccttttcgtt
     3601 cctcaagcgc atttaaggca gactggagcg cctctacgac ttccggctgt gcgggtttcg
     3661 ccgcttttgc ctgctccagt tcctgagtga tttgtttgct atcgggggcc gtcgcggcgt
     3721 acgcccccca actgaggcac caggctatca gaaaagtgat aatcaggcgc acgtcagcgt
     3781 ttcctttgat ggattagacc tggtcttttt tatcgtcaac caatgggctg gcgtcgtgtt
     3841 ctgcttcgat ctcttcagca ggaagtgggg cgggttcagc gtctggcgta acaaaggttt
     3901 cggtagatac tgccagcggc tggccaattt tcgtgacaga caggctttcc agttgctcaa
     3961 ccagattcac tttacccggt gcaaacaggt tgataacggt ggaaccgagt ttaaagcgac
     4021 ccatttcctg gcctttcagc agtgccacag aaccgtcgtt ttccccggca ggccaggtcc
     4081 agcgcttgat gataccttcg cgcggcggcg taatggtgcc cgcccagacc gtctcaatgc
     4141 tgccaacaat cgtcgctccg accagaatct gcgccattgg gccaaattcg gtatcgaaaa
     4201 ggcaaatcac gcgttcgtta cgggcaaaca gattcggcac gttctgagcg gtgagatggt
     4261 taacggagaa gagatcgccc ggcacgtaga tcatctcacg cagaataccg ttgcacggca
     4321 tgtgtacgcg atggtagtca cgcggggaga ggtaagtggt cacaaacgta ccgttgcgga
     4381 acaggtccgc catcagatag ttgcctgcca gcagggcttc gaggctgtag ttgtggcctt
     4441 tggcttgcag gattttatct tcttcgattt tacccaactg gctgataacg ccatcggcag
     4501 gcatgaccag tacattcgga tcggtatcga ttgggcgtac ttcgtcacgc agcggacgga
     4561 caaagaattc gttaaaggtg cggtagctgg cggtgtccgg cttttgcgcc tctttcatgt
     4621 cgaccttgta gtatttaacg aacagatcga taaccagttt tgtcagccat cctgcccgct
     4681 tgcttgcgcc ccaacccgcc aggcgagtaa gccatagttt cggcagaatg tactgtagcg
     4741 aaagtttaaa tgaatttaac aaggtagcct ccaggccatt gttttgtcgt tcctgatccg
     4801 gccaacatgc cggagcctga aaaaaagggg acgattctaa cgacggttag cttaattgtc
     4861 agtcatccgt atcagaaaag tttttacgcg tttttacctg cgccatgctt tccagaatac
     4921 ggtgatagtt ttcgaaacgg gtttccgcga ttttcccttc ctcaaccgct tcccggatag
     4981 cgcagcccgg atcggtatcg tgtttgcaat cgcgatattt acacagacct aaatagtcat
     5041 ggaattcgac aaagccctga gtgatttgtt ccggctccag gtgccagagg ccgaactcac
     5101 gcacaccagg ggaatcaatc acatcaccgc cgtgcgggaa gtgatacagc cgagcggcgg
     5161 tcgtggtgtg ctgaccgagc cccgagttgt cagagacatc gttggtcagg atctcttttt
     5221 gcagccccag caacgcattc agcaggctgg atttgccgac gccagactgc ccggcaaaaa
     5281 tgctgatgcg cccggtcaac gcctcttcca gcggttttag cccatcctga gtatggctgg
     5341 aaaccatcaa tacgcgataa ccgatattgc ggtagatatc catctgctcg ttgacgaacg
     5401 ccatgccttc gtcgtccagc aggtctatct tgttgagcac aataatcggc tcaatctgca
     5461 aggtttcgca ggccaccagg taacggtcga taatattgag tgacagctcc ggcaaaatgg
     5521 cggagacaat gacaatctgg tcgatgttgg cggcaatagg ttttacgccg tcgtagaaat
     5581 ccggacgcgt caacaccgag gtacgctcat gcaccgcttc cacgatccct ttgacattta
     5641 cgccttccgc cgccggttta cccggacgcc agactacacg gtcgccggtc accagcgaac
     5701 ggatggtacg gcgaatattg cagcggtgaa cgtcgccatc ggcggattcc acatcagcgt
     5761 gcataccaaa gcggctgatg acgatacctt catcaggctc gccaaacaga ttgtcgtcgt
     5821 agtcgggctt ctccttagac gttttaagac gacgctggtg attggcgttc acgcggcgct
     5881 gctggccttt ggagagttta tttttactca atcgtacaga ctcctggtcg cccctgatgg
     5941 gcaaaacatc tatgatacac gcaattgtgg atcaatatag tcactgtgaa tgggtggaaa
     6001 atagcatgag tgccaatgaa aacaacctga tttggatcga tcttgagatg actggtctgg
     6061 atcccgagcg cgatcgcatt attgagattg ccacgctggt gaccgatgcc aatctgaata
     6121 ttctggcaga agggccgacc attgcagtac atcagtccga tgaacagctg gcgctgatgg
     6181 atgactggaa cgtgcgcacc cataccgcca gcgggctggt agagcgcgtg aaagcgagca
     6241 cgatgggcga tcgggaagct gaactggcaa cgctcgaatt cttaaaacag tgggtgcctg
     6301 cgggaaaatc gccgatttgc ggtaacagca tcggacagga ccgtcgtttc ctgtttaaat
     6361 acatgccgga gctggaagcc tacttccact accgttatct cgatgtcagc accctgaaag
     6421 agctggcgcg ccgctggaag ccggaaattc tggatggttt taccaagcag gggacgcatc
     6481 aggcgatgga tgatatccgt gaatcggtgg cggagctggc ttactaccgc gagcatttta
     6541 tcaagctgta aaatttttcc tggtcacgta agcgccggaa tccacttgcg gcggcgtgat
     6601 tttgacgcta aattgaacgt cttgctgata atttcagcac ttgagataaa aacgcaaaaa
     6661 aaactttttt ggggggttgc agagggaaag atttctcgta taatgcgcct cccgtaacga
     6721 cgcagaaatg cgaaaattac gaaagcaaaa ttaagtagta cgcgggaata gctcagttgg
     6781 tagagcacga ccttgccaag gtcggggtcg cgagttcgag tctcgtttcc cgctccaaa
//
LOCUS       DADMHM010000204         6776 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.207, whole genome shotgun sequence.
ACCESSION   DADMHM010000204 DADMHM010000000
VERSION     DADMHM010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6776)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6776)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6776
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.207"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..473
                     /locus_tag="JN125_003559"
     CDS             <1..473
                     /locus_tag="JN125_003559"
                     /inference="COORDINATES: protein motif:HMM:TIGR02601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873194.1"
                     /translation="TAEGYGGAIYTNSATAPYLIDISVDDSYSQNGGVLVDENNSAAG
                     YGDGPSTAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSGDL
                     VLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDKY"
     gene            516..2507
                     /locus_tag="JN125_003560"
     CDS             516..2507
                     /locus_tag="JN125_003560"
                     /inference="COORDINATES: protein motif:HMM:NF007285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HAY8873195.1"
                     /translation="MHSLTGFQNGTLNIDAGGNVTVNQGSFAGTIEGAGQLTIAQNGS
                     YVLSGAQSMALTGDIVVDDGAVLSLEGDAADLAALQDDPQSIVLNGGVLDLSDFSTWQ
                     SGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQVSLAN
                     NNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITANVDTRTTTTEH
                     GRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTFTKTGAGTLELTASGTTQS
                     AVRVEEGTLKGDVADIFPYASSLWVGDGATFVTGADQDIQSIDATSSGTIDISDGTVL
                     RLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLADVTVNGDLTN
                     TSGAVSLQNGVAGDTLTVNGDYTGGGTLLFDSELNGDDSVSDQLVMNGNTAGNTTVVV
                     NSITGIGEPISTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYL
                     RSQEVTPPSPPDPDPDPTPDPDPTPDPIPAYQPVLNAKVGGYLNNLRAANQAFMMERR
                     DHAGGDGQTLNLRVIGGRYHYTVAGQLAQQEDTSTVQLSGGLFSGRWGTDGEWMLGAV
                     GGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWYQHGN"
     gene            2523..3035
                     /locus_tag="JN125_003561"
     CDS             2523..3035
                     /locus_tag="JN125_003561"
                     /inference="COORDINATES: protein motif:HMM:TIGR01414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HAY8873196.1"
                     /translation="MDSWLQYAWFNNDVSEHEDGVDRYHSSGIIASLEAGYQWLPGRG
                     VVIEPQAQVIYQDVQQDDFTAANHARVSQSQGDDIQTRLGLHSEWRTAVGVTPTLDLN
                     YYHDPHATEIEEDGSTISDDAVKRRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQT
                     AGFLSMTVKW"
     gene            complement(3163..3885)
                     /locus_tag="JN125_003562"
     CDS             complement(3163..3885)
                     /locus_tag="JN125_003562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-demethylubiquinone
                     3-O-methyltransferase/2-octaprenyl-6-hydroxy phenol
                     methylase"
                     /protein_id="HAY8873197.1"
                     /translation="MNAEKSPENHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLR
                     LGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESG
                     IQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTL
                     NRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNP
                     LTNTFKLGPGVDVNYMLHTQNK"
     gene            4032..6659
                     /gene="gyrA"
                     /locus_tag="JN125_003563"
     CDS             4032..6659
                     /gene="gyrA"
                     /locus_tag="JN125_003563"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HAY8873198.1"
                     /translation="MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPV
                     HRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYML
                     VDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMP
                     TKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFP
                     TAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEK
                     IAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINM
                     VALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDP
                     IIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYL
                     TEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELEL
                     VREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKG
                     KSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLP
                     LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDEL
                     IGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRG
                     DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMI
                     TDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAA
                     EGDDEIAPEVDVDDEPEEE"
BASE COUNT         1625 a         1672 c         1954 g         1525 t
ORIGIN      
        1 acactgccga aggttatggc ggggcgatat ataccaatag cgcgacggct ccctatctta
       61 ttgatatttc tgttgatgac agctacagcc agaacggcgg cgtgttagtg gatgagaaca
      121 acagcgcagc aggctatgga gatggtcctt ccactgcggc gggtggcttt atgtatctcg
      181 gcttaagtga agttaccttt gatattgccg acggaaaaac gctggttatc ggcaatacag
      241 agaatgacgg agctgttgac tctattgctg gtaccgggtt gatcaccaaa acaggttccg
      301 gcgatctggt acttaatgca gataacaatg actttactgg cgagatgcag attgaaaacg
      361 gtgaagttac cctgggccgc agcaactccc tgatgaatgt cggcgatacg cattgccagg
      421 acgatccgca agactgctac ggtctgacga tagggagtat tgataagtac tagaatcagg
      481 cagagctaaa cgttggctcc acccaacaaa cctttgtgca ctcattgacg ggctttcaga
      541 atggcacttt aaatatcgat gctggtggca atgttactgt taatcaaggt agttttgctg
      601 gcaccatcga aggtgctggt cagctcacca ttgcgcaaaa cggcagctac gtgctgtcgg
      661 gggcgcagtc gatggcgcta accggcgata tagtcgttga tgatggtgcg gtgctttcgc
      721 tggaaggcga cgcggcagat ctcgccgctc tccaggacga tccgcagtcg atcgtgttaa
      781 acggcggtgt gctcgatctc tctgatttct ccacctggca gagcggcaca tcatacaatg
      841 atggccttga agtcagtggc agcagcggaa cggttatcgg cagtcaggat gtggtagatc
      901 ttgcaggtgg cgacaatttg catatcggcg gcgacgggaa agatggcgtc tacgtggtgg
      961 tcgatgcgag cgacgggcag gtaagtctgg caaacaataa tagttatttg ggcacaacac
     1021 aaatcgcctc cggtacgctg atggtgagcg acaactcgca gcttggagat acccactata
     1081 accgccaggt tatctttacc gataagcaac aagaaagcgt gatggagatt actgccaatg
     1141 tcgatactcg cactacgacg actgagcatg ggcgtgatat tgaaatgcgc gccgacggtg
     1201 aagtggcagt tgatgcgggg gtagacacgc agtggggcgc actgatggct gacagcagcg
     1261 ggcagcatca ggatgagggt agcacattta ctaaaacggg ggcgggtacg ctggagctga
     1321 ccgccagcgg tacaacgcag tcggcagtac gtgtcgaaga aggcaccctg aaaggcgatg
     1381 ttgcggatat ctttccttat gcttcgtcac tgtgggtcgg tgatggggcg acgttcgtta
     1441 ctggcgcgga tcaggatatt cagtctatcg atgctacttc cagcggcact atcgatatca
     1501 gcgatggtac ggttttgcgt ctgaccgggc aggatacttc cgtcgccctt aatgcctcat
     1561 tgtttaacgg cgatgggacg ctggtgaatg ctaccgatgg cgtgacgttg acaggtgagc
     1621 ttaataccaa ccttgaaact gacagcctga cctatcttgc cgacgtgacg gttaatggtg
     1681 atctgaccaa tacgtccggt gcggttagcc tgcaaaatgg cgtcgctggc gatacgctaa
     1741 cggtaaacgg tgattatacc ggcggcggta cgctactgtt cgacagcgaa ttaaacggcg
     1801 atgactcggt aagcgatcaa ttggtgatga acggtaatac tgctggcaac acaactgtgg
     1861 tggttaactc cattacaggg attggtgagc cgatatcgac aggcattaaa gtggttgatt
     1921 tcgcagctga tcccacgcag tttcaaaaca atgcacagtt cagtctggct ggcagtggct
     1981 acgtcaacat gggagcgtat gactacacgc tagtggaaga taacaacgac tggtatctgc
     2041 gatcgcaaga agtaacgccg ccatcgccac ctgatccaga cccggaccca acacccgatc
     2101 ctgacccaac acccgatcca atccccgctt accagccggt gctgaatgcc aaagttggcg
     2161 gttatctcaa taacctgcgg gcggcaaatc aggcgtttat gatggagcga cgcgatcacg
     2221 ctggtggcga tggtcagacg ctgaatttac gtgttatcgg cggacgttat cattacacgg
     2281 tggcagggca actggctcag caggaagaca cttctacggt gcagcttagc ggcggcttgt
     2341 ttagcgggcg ctggggcacg gatggcgagt ggatgcttgg ggcggttggt ggctacagtg
     2401 ataatcaggg cgacagccgc tcgaatatga ccggaactcg cgccgataac cagaaccacg
     2461 gttatgccgt tgggctgacc tcaagctggt atcagcacgg taattagaag cagggggcct
     2521 ggctggatag ctggctgcaa tacgcgtggt ttaacaatga tgtttccgaa catgaagatg
     2581 gcgtggatcg ttaccattcg tcggggatta tcgcctcgct ggaagccggg tatcagtggt
     2641 taccggggcg tggtgtggtg attgaaccgc aggcgcaggt gatttatcag gacgtgcagc
     2701 aggatgattt taccgccgct aaccatgcgc gcgtgtcaca atcgcagggg gatgatattc
     2761 agacgcggct gggtttacac agcgaatggc gtaccgcggt tggtgtcaca ccaacattag
     2821 atctgaatta ttatcacgat ccccatgcga cggaaattga agaagatggc agcactatca
     2881 gtgacgatgc ggtgaagcga cggggtgaaa taaaagtggg agtcacgggc aatatcagtc
     2941 agcgagtgtc cctgcgcggc agcgtggcgt ggcagaaagg gagtgatgat tttgcccaga
     3001 cggcagggtt tttgtcgatg acggtgaaat ggtaatcact gtctagtcgg cacggttgcc
     3061 ggatgcggcg taaacgcctt atccggccta cggggagcat ttgtaggcct gataagacgc
     3121 ggcaagcgtc gcatcaggca ttggctcggc caaacaacaa cctcacttat tctgcgtgtg
     3181 cagcatatag ttcacatcca cgccggggcc gagtttaaaa gtattagtga gcgggttgta
     3241 atgtagcccg gttatatgtc gctctttaag gcttgtctga tctacccagc caagcagttc
     3301 tgccggttta ataaacttct tcacatcatg cgtgcctttg ggcaccatgc gcaaaatata
     3361 ttccgcgcca accaccgcca tcagccatga cttgccgttg cggttaagcg tcgagaaaaa
     3421 gacatcgccg cctggtttca ccagttgcgc acaggctctg accactgact gcggatcggg
     3481 gacgtgctcc agcatctcca tgcaggtcac cacatcatac tgcccggcat gttttgccgc
     3541 gtgctcttcc acggtttcct gcacataatc cacctgaatg ccgctttcca gcgcgtgcag
     3601 ttttgccacc tgcaatggct caaagcccat atccagaccg gtcaccgtcg cgccttcgcg
     3661 cgccatactc tcggccagaa tgccgccgcc acaaccgaca tcgagcacct ttttgccaaa
     3721 taaaccgcca gcacgctcgg caatatagcc cagacgcagc gggttaatgc ggtgcaacgg
     3781 tttgaactca ccttcaagat cccaccagcg ggaggcgacg gcttcaaatt tagcgatctc
     3841 ttcgtggtct acgttatggt tttccggcga tttttcggca ttcattggca cttctactcc
     3901 gtaattggca agacaaacga gtatatcagg cattggatgt gaataaagcg tataggttta
     3961 cctcaaactg cgcggctgtg ttataatttg cgacctttga atccgggata cagtagaggg
     4021 atagcggtta gatgagcgac cttgcgagag aaattacacc ggtcaacatt gaggaagagc
     4081 tgaagagctc ctatctggat tatgcgatgt cggtcattgt tggccgtgcg ctgccagatg
     4141 tccgagatgg cctgaagccg gtacaccgtc gcgtacttta cgccatgaac gtactaggca
     4201 atgactggaa caaagcctat aaaaaatctg cccgtgtcgt tggtgacgta atcggtaaat
     4261 accatcccca tggtgactcg gcggtttatg acacgatcgt ccgtatggcg cagccattct
     4321 cgctgcgtta catgctggta gacggtcagg gtaacttcgg ttccatcgac ggcgactctg
     4381 cggcggcaat gcgttatacg gaaatccgtc tggcgaaaat tgcccatgaa ctgatggccg
     4441 atctcgaaaa agagacggtc gatttcgttg ataactatga cggcacggaa aaaattcccg
     4501 acgtcatgcc aaccaaaatt cctaacctgc tggtgaacgg ttcttccggt atcgccgtag
     4561 gtatggcaac caacatcccg ccgcacaacc tgacggaagt catcaacggt tgtctggcgt
     4621 atatcgatga tgaagacatc agcattgaag ggctgatgga acacatcccg gggccggact
     4681 tcccgacggc ggcaatcatt aacggtcgtc gcggtattga agaagcttac cgtaccggtc
     4741 gcggcaaggt gtatatccgc gctcgcgcag aagtggaagt tgacgccaaa accggtcgtg
     4801 aaaccattat cgtccacgaa attccgtatc aggtaaacaa agcgcgcctg atcgagaaga
     4861 ttgcggaact ggtaaaagaa aaacgcgtgg aaggcatcag cgcgctgcgt gacgagtctg
     4921 acaaagacgg tatgcgcatc gtgattgaag tgaaacgcga tgcggtcggt gaagttgtgc
     4981 tcaacaacct ctactcccag acccagttgc aggtttcttt cggtatcaac atggtggcat
     5041 tgcaccatgg tcagccgaag atcatgaacc tgaaagacat catcgcggcg tttgttcgtc
     5101 accgccgtga agtggtgacc cgtcgtacta ttttcgaact gcgtaaagct cgcgatcgtg
     5161 ctcatatcct tgaagcatta gccgtggcgc tggcgaacat cgacccgatc atcgagctga
     5221 tccgtcatgc gccgacgcct gcagaagcga aaactgcgct ggttgctaat ccgtggcagc
     5281 tgggcaacgt tgccgcgatg ctcgaacgtg ctggcgacga tgctgcgcgt ccggaatggc
     5341 tggagccaga gttcggcgtg cgtgatggtc tgtactacct gaccgaacag caagctcagg
     5401 cgattctgga tctgcgtttg cagaaactga ccggccttga gcacgaaaaa ctgctcgacg
     5461 aatacaaaga gctgctggat cagatcgcgg aactgttgcg tattcttggt agcgccgatc
     5521 gtttgatgga agtgatccgt gaagagctgg agctggttcg tgaacagttc ggtgacaaac
     5581 gtcgtactga aatcaccgcc aacagcgcag acatcaacct ggaagatctg atcactcagg
     5641 aagatgtggt agtgacgctc tctcaccagg gctacgttaa gtatcagccg ctttctgaat
     5701 acgaagcgca gcgtcgtggc gggaaaggta aatctgccgc acgtattaaa gaagaagact
     5761 ttatcgaccg actgctggtg gcgaacactc acgaccatat tctgtgcttc tccagccgtg
     5821 gtcgcgtcta ttcgatgaaa gtttatcagt tgccggaagc cactcgtggc gcgcgcggtc
     5881 gtccgatcgt caacctgctg ccgctggagc aggacgaacg tatcactgcg atcctgccag
     5941 tgaccgagtt tgaagaaggc gtgaaagtct tcatggcgac cgctaacggt accgtgaaga
     6001 aaactgtcct caccgagttc aaccgtctgc gtaccgccgg taaagtggcg atcaaactgg
     6061 ttgacggcga tgagctgatc ggcgttgacc tgaccagcgg cgaagacgaa gtaatgctgt
     6121 tctccgctga aggtaaagtg gtgcgcttta aagagtcttc tgtccgtgcg atgggctgca
     6181 acaccaccgg tgttcgcggt attcgcttag gtgaaggcga taaagtcgtc tctctgatcg
     6241 tgcctcgtgg cgatggcgca atcctcaccg caacgcaaaa cggttacggt aaacgtaccg
     6301 cagtggcgga atacccaacc aagtcgcgtg cgacgaaagg ggttatctcc atcaaggtta
     6361 ccgaacgtaa cggtttagtt gttggcgcgg tacaggtaga tgactgcgac cagatcatga
     6421 tgatcaccga tgccggtacg ctggtacgta ctcgcgtttc agaaatcagc atcgtgggcc
     6481 gtaacaccca gggcgtgatc ctcatccgta ctgcggaaga tgaaaacgta gtgggtctgc
     6541 aacgtgttgc tgaaccggtt gacgaggaag atctcgatac catcgacggc agtgccgcgg
     6601 aaggggacga tgaaatcgct ccggaagtgg acgttgacga cgagccagaa gaagaataat
     6661 tttacttctt catgccaaaa gggagctatc tcccttgttt gaattgaaaa gtccaggctg
     6721 caaagtctgg gcttttgtcg tattagggta cggtaaagtt tggctgtgcc cgtaaa
//
LOCUS       DADMHM010000205         6773 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.208, whole genome shotgun sequence.
ACCESSION   DADMHM010000205 DADMHM010000000
VERSION     DADMHM010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6773)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6773)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6773
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.208"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..1276)
                     /locus_tag="JN125_003564"
     CDS             complement(<1..1276)
                     /locus_tag="JN125_003564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416271.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HAY8873199.1"
                     /translation="MKRVSQMTALAMALGLACASSWAAELAKPLTLDQLQQQNGKAID
                     TRPSAFYNGWPQTLNGPSGHEPAALNLSASWLDKMSTEQLNAWIKQHNLKADAPVALY
                     GNDKDVDAVKTRLQKAGFTHISILSDALSEPSRLQKLPHFEQLVYPQWLHDLQQGKEV
                     TAKPAGDWKVIEAAWGAPKLYLISHIPGADYIDTNEVESEPLWNKVSDEQLKAMLAKH
                     GIRHDTTVILYGRDVYAGARVAQIMLYAGVKDVRLLDGGWQTWSDAGLPVERGTPPKV
                     KAEPDFGVKIPAQPQLMLDMEQARGLLHRQDASLVSIRSWPEFIGTTSGYSYIKPKGE
                     IAGARWGHAGSDSTHMEDFHNPDGTMRSADDITAMWKAWNIKPEQQVSFYCGTGWRAS
                     ETFMYARAMGWKNVSVYDGGWYEWSSDPKNPVA"
     gene            complement(1343..1996)
                     /locus_tag="JN125_003565"
     CDS             complement(1343..1996)
                     /locus_tag="JN125_003565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HAY8873200.1"
                     /translation="MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLF
                     SWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGILFQDALLFDQFSVGQNLLLALP
                     STLKGTARRNAVKDALDRAGLAETYHQDPATLSGGQRARVALLRALLAQPKALLLDEP
                     FSRLDVALRDNFRQWVFSEVRELAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR"
     gene            complement(1996..3531)
                     /locus_tag="JN125_003566"
     CDS             complement(1996..3531)
                     /locus_tag="JN125_003566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416269.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HAY8873201.1"
                     /translation="MVTPLRYALIFLLWAMVAVIYAPLIPAALTLISPALSLTHWQAL
                     FADPQLPHALLATLVSTTIAAVGALLIALLVIVALWPGPKWQRMCARLPWLLAIPHVA
                     FATSALLLFADGGLLYDYFPYFTPPMDRFGIGLGLTLAVKESAFLLWILAAVLSEKRL
                     LQQVIVLDSLGYSRWQCLNWLLLPSVAPSLAMAMLAIVAWSLSVVDVAIILGPGNPPT
                     LAVISWQWLTQGDADQQTKGALASLLLMLLLAAYVLLSYLLWRSWRRTIPRVDGIRKP
                     ATPLLPGTTLASFLPLTGVLCVVLLAILADQSTINSEALINSLTMGLVATFIALLLLL
                     LWLEWGPQRRQLWLWLPILLPALPLVAGQYTLALWLNLDGSWTAVVWGHLLWVMPWML
                     FILQPAWQCIDSRLILIAQTLGWSRAKIFFYVKCPLMLRPVLIAFAVGFSVSIAQYMP
                     TLWLGAGRFPTLTTEAVALSSGGSNGILAAQALWQLLLPLIIFALTALVAKWVGYVRQ
                     GLR"
     gene            complement(3504..4670)
                     /locus_tag="JN125_003567"
     CDS             complement(3504..4670)
                     /locus_tag="JN125_003567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416268.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HAY8873202.1"
                     /translation="MRHCGWLLGLLSLFSLATHASDWQEIKNEAKGQTVWSNAWGGDT
                     AINRYLDWVSGEMKTHYAINLKIVRLADAADAVKRIQTEAAAGRKTGGSVDLLWVNGE
                     NFRTLKEANLLQTGWAETLPNWRYVDTQLPVREDFSVPTQGAESPWGGAQLTFIARRD
                     VTPQPPQTPQALLEFAKANPGTVTYPRPPDFTGTAFLEQLLIMLTPDPAALKEAPDDA
                     TFARVTAPLWQYLDALHPYLWREGKDFPPSPARMDALLKAGTLRLSLTFNPAHAQQKI
                     ASCDLPASSYSFGFREGMIGNVHFVTIPANANASAAAKVVANFLLSPDAQLRKADPVV
                     WGDPSVLDPQKLPDGQREILQSRMPQDLPPVLAEPHAGWVNALEQEWLRRYGTH"
     gene            complement(4680..5228)
                     /locus_tag="JN125_003568"
     CDS             complement(4680..5228)
                     /locus_tag="JN125_003568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HAY8873203.1"
                     /translation="MGLPPLSKIPFILRPQAWLHRRHYGEVLSPIRWWGRIPFIFYLV
                     SMFVGWLERKRSPLDPVVRSLVSARIAQMCLCEFCVDITSMKVAERTGSTDKLLAVAD
                     WRQSPLFSDEERLALEYAEAASVTPPTVDDALRTRLAAHFDAQALTELTALIGLQNLS
                     ARFNSAMDIPAQGLCRIPEKRS"
     gene            complement(5228..5935)
                     /locus_tag="JN125_003569"
     CDS             complement(5228..5935)
                     /locus_tag="JN125_003569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001697152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HAY8873204.1"
                     /translation="MMKMQSRKIWYYRITLIILLFAMLLAWALLPGVHEFINRSVAAF
                     AAVDQQGIERFIQSYGALAAVVSFLLMTLQAIAAPLPAFLITFANASLFGAFWGGLLS
                     WTSSMAGAALCFFIARVMGREVVEKLTGKTVLDSMDGFFTRYGKHTILVCRLLPFVPF
                     DPISYAAGLTSIRFRSFFIATGLGQLPATIVYSWAGSMLTGGTFWFVTGLFILFALTV
                     VIFMAKKIWLERQKRND"
     gene            complement(5950..6627)
                     /gene="ydjY"
                     /locus_tag="JN125_003570"
                     /pseudo
     CDS             complement(5950..6627)
                     /gene="ydjY"
                     /locus_tag="JN125_003570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416265.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="protein YdjY"
     gene            complement(6632..>6773)
                     /locus_tag="JN125_003571"
     CDS             complement(6632..>6773)
                     /locus_tag="JN125_003571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416264.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HAY8873205.1"
                     /translation="RFILQLCLAGLALFILVQLAKLYARHKHVDLSASRRSPLTHPKN
                     EG"
BASE COUNT         1630 a         1896 c         1765 g         1482 t
ORIGIN      
        1 ttgctaccgg attttttgga tcgctgctcc attcgtacca gccgccgtca tacacggaaa
       61 cattcttcca acccatggcg cgtgcgtaca taaaggtttc ggacgcgcgc cagccggtgc
      121 cgcagtagaa tgaaacttgc tgctctggtt tgatattcca cgctttccac atagcggtaa
      181 tatcatcggc gctgcgcatg gtgccatccg ggttatgaaa atcttccata tgcgtcgagt
      241 cgctaccagc gtgtccccaa cgtgctccgg ctatttcacc ttttggttta atatagctgt
      301 aaccgctggt cgtaccgata aattctggcc acgaacgaat gctcaccagc gatgcatcct
      361 ggcgatgcag cagtccacgg gcctgttcca tatcgagcat caactgcggt tgtgccggga
      421 tcttcacgcc gaaatccggt tccgctttca ctttcggtgg cgttcctcgc tcaacaggca
      481 gtcccgcgtc ggaccaggtt tgccagccgc catccagcag acgcacatct ttcacgcctg
      541 cgtagagcat aatttgcgcc acacgcgctc cagcgtatac gtcacgcccg tacagaatga
      601 ccgtggtgtc atggcgaatg ccgtgttttg ccagcatcgc ttttagttgt tcatcagaaa
      661 ctttgttcca cagcggttcg ctttccactt cgttggtatc gatgtagtca gcaccgggaa
      721 tatggctgat aaggtaaagc ttaggagcgc cccaggccgc ttcaatgact ttccagtcac
      781 cggcaggttt cgccgtaacc tctttacctt gttgcaggtc gtgcagccat tgcggataaa
      841 ccagctgctc aaagtgcggc agtttttgta gacgggaagg ttcgcttagc gcgtcactca
      901 gaatggagat atgcgtaaaa cctgcttttt gcagtcgcgt tttgacggcg tcgacatctt
      961 tgtcattacc gtacagcgcc accggggcat cggctttcag gttatgttgc ttgatccacg
     1021 cgttgagctg ttcggtgctc attttgtcga gccagctggc agagaggttt aaggcggcag
     1081 gttcatgacc agaagggcca tttaaggttt gtggccagcc gttataaaac gcgctggggc
     1141 gagtatctat cgctttgcca ttttgttgtt gaagctggtc aagtgtaaga ggcttcgcca
     1201 gttcagcggc ccacgaagaa gcgcaagcca gccctaaagc cattgccagc gcggtcattt
     1261 gagaaacacg tttcatcgaa aatcccgaca ttgtagtttt gagtgcgcca ttctgaactg
     1321 acgcattgag aaaaactttg cgttatcgca gtttgttgta attttctgac cactgcgcca
     1381 tatccagaac agaactatca gcaggaacat cctggagatc gtgcgttacc tgaacgacgg
     1441 ggatcgccag ttcgcgaact tcgctgaaca cccactggcg aaaattatcg cgcagagcca
     1501 catcaagacg gctgaatggc tcatccagga gtaacgcttt tggctgagcg agaagggcgc
     1561 gcagcagggc cacccgcgct cgctgaccgc ctgataatgt cgcagggtcc tggtgataag
     1621 tttcagccag tcccgctcga tcaagcgcgt ctttcacggc attgcgcctg gcagtcccct
     1681 tgagcgtcga cggtagcgcc agcagtaaat tttgcccgac gctgaactgg tcaaataaca
     1741 gtgcatcctg gaaaagaatg ccaatctgac gctgtgcggt gggtagcatg tcaatccgtt
     1801 gctcattgag ccatagctca cctgtacaag aaaactgtcc agccagtgca ccaatcatcc
     1861 atgaaaacag agtggatttt ccacagccag acggccccat taacgtgacg atgtcacctt
     1921 tatcaaccgt aaagttaacg tttgtcagca agcggctttc tggtaaacgt agcgaaacat
     1981 ttttcacgca gagcattagc ggagtccttg tctgacataa cctacccatt ttgcgactaa
     2041 cgcggtcagg gcaaaaataa taagcggtaa caacagttgc cataaagcct gggcggcgag
     2101 aataccgttg ctgccgccgc tgcttaatgc caccgcctca gtggtgagcg tcggaaaacg
     2161 ccccgcgccc agccacagcg tcggcatata ctgcgcaata ctgactgaaa atcccaccgc
     2221 gaaggcaatc agcacagggc gcaacatgag tgggcatttc acgtaaaaga agattttggc
     2281 ccgcgaccag cccagtgttt gcgcaatcaa aattaaccgt gaatcaatgc actgccaggc
     2341 gggttgcagg ataaacagca tccacggcat tacccacagc agatgccccc agaccaccgc
     2401 cgtccagctt ccatccaggt tcagccatag cgccagcgtg tactggcccg ccaccagtgg
     2461 cagagcgggc aatagaatgg gcaaccatag ccacaactgg cgacgctgtg gcccccattc
     2521 cagccacagc agtaacagga gcaaagcgat gaatgttgct accagcccca ttgtcagact
     2581 gttgatgagt gcttcactat tgatcgtcga ctgatccgcg aggatcgcca gcagaaccac
     2641 acacagcaca ccggttaagg gtaaaaaact cgccagcgta gtgcctggta ataaaggtgt
     2701 ggcaggcttg cgaatgccat ctacgcgggg aatagtgcgc cgccagctgc gccatagcag
     2761 atagctcagc aaaacgtagg cggcgagtaa cagcatcagc agcagactgg cgagtgcgcc
     2821 tttcgtttgt tgatccgcgt cgccctgagt taaccactgc cagctaatta ctgccagcgt
     2881 cggtggatta cctggcccaa gaataatcgc cacatccacg accgaaagcg accaggcaac
     2941 aatcgccagc atcgccattg ccagcgaagg cgcgacggag ggcaacagca gccagttcag
     3001 gcattgccag cggctgtagc ccagcgaatc cagcacaatg acctgctgca acagccgttt
     3061 ttcgctcaat actgccgcta agatccacag cagaaatgcg ctttctttca ctgcaagggt
     3121 gaggcccaga ccgatgccaa atcggtccat tggcggagtg aaatacggga aatagtcata
     3181 tagcagccct ccgtcagcaa agagcagcag ggcgctggtg gcaaaagcca catggggaat
     3241 ggcgagcagc cacggcagac gggcgcacat acgctgccat ttcggcccag gccatagcgc
     3301 cacaatcacc agcagggcaa tcaacaatgc cccgaccgcc gcgatggttg tcgacaccag
     3361 cgttgccagt aatgcatgcg gtaactgtgg atcggcaaat aacgcctgcc agtgtgtcaa
     3421 cgacaacgca ggcgatatca gcgtgagagc tgccgggatc agcggtgcat aaatcaccgc
     3481 caccatcgcc cacagcaaaa agattaatgc gtaccgtaac ggcgtaacca ttcttgttcc
     3541 agtgcattca cccatcctgc gtgcggttca gccagtaccg gcggcagatc ctgcggcatt
     3601 cttgattgca atatttcgcg ctgcccgtca ggcagttttt gcggatcgag aacagaagga
     3661 tcgccccaga caacgggatc tgctttacgc agttgcgcat cgggtgagag cagaaaattg
     3721 gcaactacct tcgccgcagc actggcattc gcgttggctg gaatggtgac gaaatgcacg
     3781 ttgccaatca tcccctcgcg aaagccaaaa ctgtaactgc ttgccggcaa atcgcagctg
     3841 gcgatttttt gctgcgcatg cgcggggtta aaggtcagcg acaggcgcaa tgtgccggct
     3901 ttcagcagag catccatccg cgcgggcgaa ggcgggaaat cctttccttc gcgccacaaa
     3961 tacggatgca gtgcatcaag atattgccac aagggcgcag tgacacgggc gaaagtcgca
     4021 tcgtccggcg cttcttttaa tgcggcggga tctggcgtca gcataatcag caactgttca
     4081 agaaacgccg tgccggtaaa gtccggtggg cgcggataag taaccgtgcc gggattggct
     4141 ttagcaaact ccagtaaggc ttgcggcgtt tgtggtggct gtggcgtaac atcgcggcgg
     4201 gcgataaacg tcagttgtgc gccgccccag ggcgattccg caccttgtgt cggcactgaa
     4261 aaatcttccc gcaccggcag ctgtgtgtcg acatagcgcc agttgggcag agtctccgcc
     4321 cagcccgttt gtaataaatt ggcctctttt aaggtgcgga agttttcgcc gttcacccag
     4381 agcagatcca ccgagccgcc cgttttacga ccggcagcag cttcggtctg aatgcgcttc
     4441 accgcgtctg cggcatccgc gagacgaaca atcttcaggt ttatagcgta atgggttttc
     4501 atctcgccgc taacccagtc gagatagcgg ttaattgcgg tatcgccgcc ccaggcgtta
     4561 gaccagacgg tttgcccttt ggcctcattt ttaatttcct gccagtcact ggcatgtgtt
     4621 gccaaagaaa acagcgataa caatcccagc aaccacccac aatggcgcat cttctctcct
     4681 taagaacgtt tttccggaat acggcacagc ccctgagcgg gaatgtccat ggcagaatta
     4741 aaacgagccg acaggttttg caggccgatc aatgccgtca gttcggtgag cgcctgagcg
     4801 tcaaaatgcg cagccagtcg ggtacgcagg gcatcatcga ctgttggcgg tgtgacgctt
     4861 gcggcttcgg cgtactccag cgccagccgt tcttcatcgc taaagagcgg gctttgccgc
     4921 cagtcagcca ctgccagcag tttatcggtg ctgccggtac gctcggcgac tttcatactg
     4981 gtgatatcca cacaaaactc acacaggcac atttgcgcaa tgcgcgcgct gacaagcgat
     5041 cgcactaccg gatcgagcgg tgagcgtttg cgctccagcc acccaacaaa cattgacacc
     5101 aaataaaaga taaacgggat ccgcccccac cagcgaatcg ggcttagcac ctcgccgtaa
     5161 tggcgacgat gcagccacgc ctgcggacgt aaaatgaaag gaattttgct aagcggcggt
     5221 aaacccatca gtcattcctc ttctggcgct caagccatat tttcttcgcc ataaaaatca
     5281 ccacggtcag ggcaaacaga ataaacagtc cggtgacaaa ccagaaagta ccgcctgtta
     5341 acatgctgcc cgcccaggaa taaacaatag tcgccggtaa ttgaccaagc ccggtggcga
     5401 taaaaaacga gcgaaaacgt attgaagtca gaccggcagc atagctgatt ggatcgaaag
     5461 ggacaaaagg caataaccga cagaccagga tggtgtgttt gccgtagcga gtgaaaaagc
     5521 cgtccatact gtcaagcacg gttttgccgg ttaatttttc caccacttcg cggcccatca
     5581 ctctggcgat aaaaaagcac agcgccgcgc cggccatcga actggtccac gacagcaagc
     5641 cgccccagaa cgcgccaaac agcgacgcat tggcaaaggt gatcaaaaac gcaggtagcg
     5701 gtgcagcaat ggcctgtaaa gtcatcaaca agaacgagac aactgccgcc agtgcgccgt
     5761 aagactgaat aaagcgttct ataccctgtt ggtccacggc ggcaaacgcc gcaacgctgc
     5821 gattgataaa ctcatggacg ccgggaagca gcgcccatgc gagcagcata gcgaacaaca
     5881 ggatgatgag ggttatacgg tagtaccaga ttttacgcga ttgcatcttc atcatccttt
     5941 atcctggctt tattcggtga ttttaaaggt aaccgttgcc agcgtgttat ccgccgggag
     6001 aactgaggca ttgcctttga atttcacttc gccgcgtttt tccaccgcac cataagtgta
     6061 tgttgcattg ctgacgatgc cgaccgggca gctatccaga cacaccagtc aacccgtttt
     6121 cttctcttct gctgccgtta aattaccgcc aaagcgcatg tccagtttct tgccattact
     6181 gtcaacaatc acttcatcga aggaatacgc ttttgccgcc ccttgccagt tgaccgaaat
     6241 atccagtttg ctgcctgtga catgagtcgt ttctttatta tccatcgtca tgttttcgcc
     6301 cggcgtacca cctgcctctt tcagggcttc ataaaatgct ttcggggtcg cataagccat
     6361 aaacagcgat ttatgtccgt tggagccatc tttaaacaca ataccgtgac gagtgtcgtc
     6421 ggtgaggaaa cgaccattaa tttgcaccag catggttacc gtatggttat tggcatcgac
     6481 gcgcagcggt tggctgttcg aaagtccgtc gtattccact tttgccgccg cattctcttt
     6541 ttgatcgcag ccgctaagcc cggcaacagc cagtaagcag agtgcagcca gtcctttttt
     6601 ccatgacact gaataatgtt gcgacatcgt tctatccttc attttttggg tgagtaagcg
     6661 ggctgcggcg cgaagcagac agatccacat gtttgtgtcg ggcgtagagt tttgcgagct
     6721 ggacgagaat aaacagcgcc aggcccgcca gacagagttg taaaataaag cgc
//
LOCUS       DADMHM010000206         6684 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.209, whole genome shotgun sequence.
ACCESSION   DADMHM010000206 DADMHM010000000
VERSION     DADMHM010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6684)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6684)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6684
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.209"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            199..939
                     /locus_tag="JN125_003572"
     CDS             199..939
                     /locus_tag="JN125_003572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HAY8873206.1"
                     /translation="MRKIALILAMLLIPCVSFADLLGSSSSTTPVSKEYKQQLMGSPV
                     YIQIFKEERTLDLYVKMGEQYQLLDSYKICKYSGGLGPKQRQGDFKSPEGFYSVQRNQ
                     LKPDSRYYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSIGCYAMTNQGIDEIFQFVTG
                     ALVFGQPSVQVSIYPFRMTDANMKRHKYSNFKDFWEQLKPGYDYFEQTRKPPTVSVVN
                     GRYVVSKPLSHEVVQPQLASNYTLPEAK"
     gene            complement(910..1677)
                     /locus_tag="JN125_003573"
     CDS             complement(910..1677)
                     /locus_tag="JN125_003573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II glutamine amidotransferase"
                     /protein_id="HAY8873207.1"
                     /translation="MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGK
                     GCRTFKDPQPSFNSPIAKLVQDYPIKSCSVVAHIRQANRGEVALENTHPFTRELWGRN
                     WTYAHNGQLTGYKSLETGNFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMAAVFKYIA
                     SLADELRQKGVFNMLLSDGRYVMAYCSTNLHWITRRAPFGVATLLDQDVEIDFSSQTT
                     PNDVVTVIATQPLTGNETWQKIMPGEWRLFCLGERVV"
     gene            complement(1883..2461)
                     /gene="lpcA"
                     /locus_tag="JN125_003574"
     CDS             complement(1883..2461)
                     /gene="lpcA"
                     /locus_tag="JN125_003574"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017458774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HAY8873208.1"
                     /translation="MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAG
                     GKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFNDIFS
                     RYVEAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEI
                     RVPHFGYADRIQEIHIKVIHILIQLIEKEMVK"
     gene            2701..5145
                     /locus_tag="JN125_003575"
     CDS             2701..5145
                     /locus_tag="JN125_003575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414756.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA dehydrogenase"
                     /protein_id="HAY8873209.1"
                     /translation="MMILSILATVVLLGALFYHRVSLFISSLILLAWTAALGVAGLWS
                     AWVLVPLAIILVPFNFAPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDL
                     FQGKPDWKKLHNYPQPRLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLK
                     EHRFFAMIIKKEYGGLEFSAYAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGT
                     DEQKDHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGIVCMGEWQGQQVLGMRLTWN
                     KRYITLAPIATVLGLAFKLSDPEKLLGGAEDLGITCALIPTTTPGVEIGRRHFPLNVP
                     FQNGPTRGKDVFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGVKSVALA
                     TGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLGEKPAVLSAI
                     VKYHCTHRGQQSIIDAMDITGGKGIMLGQSNFLARAYQGAPIAITVEGANILTRSMMI
                     FGQGAIRCHPYVLEEMEAAKNNDVNAFDKLLFKHIGHVGSNKVRSFWLGLTRGLTSST
                     PTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDILSQLYLASAV
                     LKRYDDEGRNEADLPLVHWGVQDALYQAEQAMDDLLQNFPNRVVAGLLNVVIFPTGRH
                     YLAPSDKLDHKVAKILQVPNATRSRIGRGQYLMPSEHNPVGLLEEALVDVIAADPIHQ
                     RICKELGKNLPFTRLDELAHNALAKGLIDKDEAAILVKAEESRLRSINVDDFDPEELA
                     TKPVKLPEKVRKVEAA"
     gene            complement(5188..5661)
                     /gene="ivy"
                     /locus_tag="JN125_003576"
     CDS             complement(5188..5661)
                     /gene="ivy"
                     /locus_tag="JN125_003576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C-lysozyme inhibitor"
                     /protein_id="HAY8873210.1"
                     /translation="MGRISSGGMMFKAITTVAALVIATSAMAQDDLTISSLAKGETTK
                     AAFNQMVQGHKLPAWVMKGGTYTPAQTVTLGDETYQVMSACKPHDCGSQRIAVMWSEK
                     SNQMTGLFSTIDEKTSQEKLTWLNVNDALSIDGKTVLFAALTGSLENHPDGFNFK"
     gene            5815..6585
                     /gene="yafV"
                     /locus_tag="JN125_003577"
     CDS             5815..6585
                     /gene="yafV"
                     /locus_tag="JN125_003577"
                     /EC_number="3.5.1.111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutaramate amidase"
                     /protein_id="HAY8873211.1"
                     /translation="MPGLKITLLQQPLVWMDGPANLRHFDRQLEGITGRDVIVLPEMF
                     TSGFAMEAAASSLAQDDVVNWMTAKAQQCNALIAGSVALQTESGSVNRFLLVEPGGTV
                     HFYDKRHLFRMADEHLHYKAGNARVIVEWRGWRILPLVCYDLRFPVWSRNLNDYDLAI
                     YVANWPAPRSLHWQALLTARAIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIA
                     TADAHQATRIDAELSMMALREYREKFPAWQDADEFRLR"
BASE COUNT         1544 a         1704 c         1820 g         1616 t
ORIGIN      
        1 atcttaggaa ataaatgata catgcgcttt tcggactatt gaaaactgcc cctgtgctaa
       61 atttgtaaac cctgcgccga caggcttgcg taaaactctt ttggtgataa tgtgagcctt
      121 ccaaatccag actattccga tttgggatcc attttgccgt cctggcgtgt gtaaccgttt
      181 tatcaaggaa taagcagtat gcgtaaaatc gcattaattc ttgcgatgtt gttgatcccg
      241 tgcgtttcgt ttgccgattt gctgggcagc agtagctcga ccacgccagt gagcaaagag
      301 tataagcagc agttgatggg atcccctgtc tacatccaga tcttcaagga agaacgtacg
      361 ctcgatctct acgtcaaaat gggcgagcaa tatcagctgc tcgacagtta taaaatctgt
      421 aaatattccg gcggcttagg gccaaaacag cgtcagggcg atttcaaaag cccggaaggg
      481 ttttatagcg tccagcgtaa tcagttaaaa ccagacagcc gttactacaa agcgattaat
      541 attggtttcc ccaatgccta tgaccgtgcg catggttatg aagggaaata cctgatgatc
      601 cacggcgatt gtgtttccat cggctgctac gcaatgacca atcagggtat tgatgagatc
      661 ttccagttcg ttactggtgc gctggtgttt ggtcagccga gcgtgcaagt gagtatttac
      721 ccgttccgca tgaccgacgc caatatgaag cgccataaat attccaactt taaggacttc
      781 tgggagcaac tgaagccggg ttacgactac tttgagcaaa cccgtaagcc accgaccgtt
      841 tctgtggtca atggtcgtta cgtggtcagc aagccgttaa gccacgaagt tgtgcagcca
      901 caactggcat caaactacac gctccccgag gcaaaataag cgccattcgc ctggcataat
      961 cttttgccag gtttcattgc ccgtcagcgg ctgtgtcgca atcaccgtga ccacatcatt
     1021 cggtgtggtc tgcgagctga agtcgatttc tacatcctga tccagcagcg ttgccacgcc
     1081 aaacggtgcg cggcgggtga tccagtgcag attcgtcgag caatacgcca ttacatagcg
     1141 cccatccgaa agcagcatgt tgaaaacgcc cttctgccgc agttcgtccg ccagtgaagc
     1201 gatatattta aacactgctg ccatgttgcc cggcgtgcgc gggtaacgct gcgttaattt
     1261 atgcagcagc cagcagaagg ctttttcgct gtcggtttcg cctaccgggc ggaagttgcc
     1321 ggtttccagt gatttgtagc ccgtcagttg tccgttatgg gcataagtcc agttacgccc
     1381 ccataactcg cgggtaaatg ggtgagtatt ttccaacgcc acctcgcccc gattagcctg
     1441 gcgaatatga gccaccaccg aacaggattt tatcgggtag tcctggacaa gtttggcgat
     1501 gggggaatta aagctgggtt gtggatcttt aaatgtgcga cagcctttac cttcgtaaaa
     1561 ggtaatgccc cagccatctt tatgtggccc ggttccacca ccacgctgta caagtccggt
     1621 gaaactaaag cagatatcgg tagggacgtt ggcgctcatc ccgagcaatt cgcacatggg
     1681 taacctccac aacagcggga gcgcatggcc cccggcgaag attgatttaa gaattttcag
     1741 gtcggatgcg gcgtaaacga attattcggc ctacggttcg cgtacagatt tgtaggcatg
     1801 ataagacgcg tcagcatcgc atcaggcatc agcgcacaag tgccggatgc ggcgtaaacg
     1861 ccttatccgg cctacgccag acttacttaa ccatctcttt ttcaattaac tggatcagga
     1921 tatggatcac tttaatgtga atctcctgaa tgcggtcggc ataaccaaag tgcggtacgc
     1981 gaatttcgat atccgccgtg ccagccattt tgccgccgtc tttaccggtc agggtgatca
     2041 ctttcatccc cttctcacgc gccgctgcga tcgctttgat cacgtttgca gagttaccgg
     2101 aggtggagat ccccagcagt acatcgcctt cgcgacctac cgcttcaacg tagcgggaga
     2161 aaatatcatt gaaaccgaaa tcattaccga cgcaggaaat atgactaacg tcagaaatag
     2221 caatcgccgg gtagcccgga cggttttcac ggtagcgacc ggtcaactct tcggcaaagt
     2281 gcatagcgtc gcaatgggaa ccgccgttgc cgcaggaaag cactttgcca ccggctttaa
     2341 agctgtctgc taacaggacc gccgcgcgct gaatggcgtg aatattggcg tcatctttta
     2401 aaaagttagc cagcgtttcc gccgcttcgt tcagttcgtt acgaataaga tcctggtaca
     2461 tgaggatatc cttcagcata aatgtaatag acaaaatgca gtgtaccgga taccgccaaa
     2521 agcgagaagt acgggcaggt gctatgacta ggactttttg acctgaagtg cggataaaaa
     2581 cagcaacaat gtgagctttg ttgtaattat attgtaaaca cattgctaaa tgtatttaca
     2641 tccactacaa ccatatcatc acaagtggtc agacctccta caagtaaggg gcttttcgtt
     2701 atgatgattt tgagtattct cgctacggtt gtcctgctcg gcgcgttgtt ctatcaccgc
     2761 gtgagcttat ttatcagcag tctgattttg ctcgcctgga cagccgccct cggcgttgct
     2821 ggtctgtggt cggcgtgggt actggtgcct ctggccatta tcctcgtgcc atttaacttt
     2881 gcgcctatgc gtaagtcgat gatttccgcg ccggtatttc gaggtttccg taaggtgatg
     2941 ccgccgatgt cgcgcactga gaaagaagcg attgatgcgg gcaccacctg gtgggagggc
     3001 gacttgttcc agggcaagcc ggactggaaa aagctgcata actatccgca gccgcgcctg
     3061 accgccgaag agcaagcgtt tctcgacggc ccggtagaag aagcctgccg gatggcgaat
     3121 gatttccaga ttactcatga gctggcggat ctgccgccgg agttgtgggc gtaccttaaa
     3181 gagcatcgct tcttcgcgat gattatcaaa aaagagtacg gcggactgga gttctcagct
     3241 tatgcccagt ctcgcgtgct gcaaaaactc tccggcgtga gcgggatcct ggcgattacc
     3301 gtcggcgtgc cgaactcatt aggcccgggc gagctgctgc aacattacgg cactgacgag
     3361 cagaaagatc actatctgcc gcgtctggcg cgtggtcagg agatcccttg ctttgcactg
     3421 acaagcccgg aagcgggttc cgatgcgggc gcgattccgg acaccgggat tgtctgcatg
     3481 ggcgaatggc agggccagca ggtgctgggg atgcgtctga cctggaacaa acgctatatt
     3541 acgctggcac cgattgcgac tgtgcttggg ctggcgttta aactctccga cccggaaaag
     3601 ctgctgggtg gcgcagaaga tttaggtatt acctgtgcgc tgatcccgac caccacgccg
     3661 ggcgtggaaa ttggtcgtcg ccacttcccg ctgaacgtac cgttccagaa cggaccgacg
     3721 cgcggtaaag atgtcttcgt accgatcgat tacatcatcg gtgggccgaa aatggccggg
     3781 caaggctggc ggatgctggt ggagtgcctc tcggtaggcc gcggcatcac cctgccttcc
     3841 aactcaaccg gcggcgtgaa atcggtagcg ctggcaacgg gcgcgtatgc tcacattcgc
     3901 cgtcagttca aaatctctat cggtaagatg gaagggattg aagagccgct ggcgcgtatt
     3961 gccggtaatg cctacgtgat ggatgctgcg gcatcgctga ttacctacgg cattatgctc
     4021 ggcgaaaaac ctgccgtgct gtcggctatc gttaagtatc actgtaccca ccgcgggcag
     4081 cagtcgatta ttgatgcgat ggatatcact ggtggcaaag gcattatgct cgggcaaagc
     4141 aacttcctgg cgcgtgctta ccagggcgca ccgattgcca tcaccgttga aggggctaac
     4201 attctgaccc gcagcatgat gatcttcgga caaggagcga ttcgttgcca tccgtacgtg
     4261 ctggaagaga tggaagcggc gaagaacaat gacgtcaacg cgttcgataa actgttgttc
     4321 aaacatatcg gtcacgtcgg tagcaacaaa gttcgcagct tctggctggg cctgacgcgc
     4381 ggtttaacca gcagcacgcc aaccggcgat gccactaaac gctactatca gcacctgaac
     4441 cgcctgagcg ccaacctcgc cctgctttct gatgtctcga tggcagtgct gggcggcagc
     4501 ctgaaacgtc gcgagcgcat ctcggcccgt ctgggggata ttttaagcca gctctacctc
     4561 gcctctgccg tgctgaagcg ttatgacgac gaaggccgta atgaagccga cctgccgctg
     4621 gtgcactggg gcgtacaaga tgcgctgtat caggctgaac aggcgatgga tgatttactg
     4681 caaaacttcc cgaaccgcgt ggttgccggg ctgctgaatg tggtgatctt cccgaccgga
     4741 cgtcattatc tggcaccttc tgacaagctg gatcataaag tggcgaagat tttacaagtg
     4801 ccgaacgcca cccgttcccg cattggtcgc ggtcagtacc tgatgccgag cgagcataat
     4861 ccggttggct tgctggaaga ggcgctggtg gatgtgattg ccgccgaccc aattcatcag
     4921 cggatctgta aagagctggg taaaaacctg ccgtttaccc gtctggatga actggcgcac
     4981 aacgcgctgg cgaaggggct gattgataaa gatgaagccg ctattctggt gaaagctgaa
     5041 gaaagccgtc tgcgcagtat taacgttgat gactttgatc cggaagagct ggcgacgaag
     5101 ccggtaaagt tgccggagaa agtgcggaaa gttgaagccg cgtaattgaa taacggagcc
     5161 gaaaggctcc gtttctttat ccactaatta tttaaaatta aagccatccg gatggttttc
     5221 caggctgccg gtcaacgccg cgaacagcac cgttttacca tcaatcgaaa gcgcatcgtt
     5281 cacattcagc caggtgagtt tctcttgcga cgttttctca tcaatagtcg agaacagccc
     5341 cgtcatctga ttagatttct cggaccacat cacagcgata cgttgcgagc cacagtcatg
     5401 cggtttgcac gcgctcatca cctgatacgt ctcatctccc aacgttacgg tttgtgcggg
     5461 agtataagta ccgcctttca tcacccaggc aggcagctta tgcccttgta ccatctgatt
     5521 aaatgcagct ttggtggttt cgccctttgc aaggctgcta atggttaaat catcctgcgc
     5581 cattgcactg gtggcgatga ccagagcggc gactgtcgtt attgccttaa acatcattcc
     5641 tcccgagctt atcctgccca tgttattaac cttctaaagc ctagcgataa cacgataatt
     5701 tgcaaatcag atatttccaa tatcagcatt tgttatcaat ttattctgcg ctaaggcaac
     5761 tgcctgataa ggtgttaaag ttataaaacc cttcgcataa aggagttgta caccgtgcct
     5821 ggtttgaaga ttacgctttt gcagcaacca ctggtgtgga tggatggccc tgccaacctg
     5881 cgtcattttg atcgtcaact ggaaggtatt accgggcgcg atgtgatcgt tctaccggag
     5941 atgtttacca gcggctttgc catggaagcg gcagcttcgt cgctagcaca agatgacgta
     6001 gtgaactgga tgacagctaa ggcgcagcag tgcaatgcgc tgattgcagg cagtgttgca
     6061 ttacaaacgg agtctggttc ggttaaccgc tttttgctgg ttgagccggg cggcacggta
     6121 catttttatg ataagcgtca tctgttccgc atggcagatg agcatctaca ttataaagcg
     6181 ggcaatgcgc gagtgattgt ggaatggcgc ggctggcgta ttttgccgtt ggtgtgctac
     6241 gacttacgtt ttccggtgtg gtcgcgcaat ctcaacgatt atgacctcgc catctacgtt
     6301 gccaactggc ctgctccgcg ctctctgcac tggcaggcat tgctgacggc ccgcgcgatt
     6361 gagaatcagg cgtatgtggc gggatgcaat cgcgtcggca gcgatggcaa cggctgccat
     6421 tatcgcggtg acagccgggt gattaatcca caaggcgaga ttatcgctac tgccgacgcg
     6481 catcaggcaa cgcgcattga tgcggagctg tcgatgatgg cattgcggga atatagagaa
     6541 aagtttccgg catggcagga tgcggatgag tttaggttgc ggtgagtggg ggttgtgttt
     6601 aaggctgggg gagagtcggg gtaagactac gaaagcccgc tctccgcaag gactgacgcc
     6661 agatagtttc tgtccatagc tgct
//
LOCUS       DADMHM010000207         6640 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.210, whole genome shotgun sequence.
ACCESSION   DADMHM010000207 DADMHM010000000
VERSION     DADMHM010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6640)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6640)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6640
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.210"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            48..788
                     /locus_tag="JN125_003578"
     CDS             48..788
                     /locus_tag="JN125_003578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709808.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HAY8873212.1"
                     /translation="MGSVLDEFQTHRPLIACTVIGLILGDLKTGIILGGTLELIALGW
                     MNVGAAQSPDSALASIISAILVIVGQQSIATGIAIALPVAAAGQVLTVFARTITVVFQ
                     HAADKAAEEARFRTLDILHVSAFGVQALRVAIPALIVSLFVSADMVSNMLSAIPEFVT
                     RGLQIAGGFIVVVGYAMVLRMMGVKYLMPFFFLGFLAGGYLDLSLLAFGGVGVIMALV
                     YIQLNPQWRKAEPQLQATASTALDQLDD"
     gene            799..1620
                     /locus_tag="JN125_003579"
                     /pseudo
     CDS             799..1620
                     /locus_tag="JN125_003579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709807.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
     gene            1675..2906
                     /locus_tag="JN125_003580"
                     /pseudo
     CDS             1675..2906
                     /locus_tag="JN125_003580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312968.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
     gene            3289..3978
                     /gene="pepE"
                     /locus_tag="JN125_003581"
     CDS             3289..3978
                     /gene="pepE"
                     /locus_tag="JN125_003581"
                     /EC_number="3.4.13.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase PepE"
                     /protein_id="HAY8873213.1"
                     /translation="MELLLLSNSTLPGKAWLEHALPLIAEQLQGRRSAVFIPFAGVTQ
                     TWDDYTAKTAAVLAPLGVSVTGIHSVVDPVAAIENAEIVIVGGGNTFQLLKQCRERGL
                     LAPITDVVKRGALYIGWSAGANLACPTIRTTNDMPIVDPQGFDALNLFPLQINPHFTN
                     ALPEGHKGETREQRIRELLVVAPELTIIGLPEGNWITVSKGHATLGGPNTTYVFKAGE
                     EAVPLEAGHRF"
     gene            complement(4069..5700)
                     /locus_tag="JN125_003582"
     CDS             complement(4069..5700)
                     /locus_tag="JN125_003582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi cotransporter family protein"
                     /protein_id="HAY8873214.1"
                     /translation="MLTLLHLLSAVALLVWGTHIVRTGVMRVFGARLRTVLSRSVEKK
                     PLAFCAGIGVTALVQSSNATTMLVTSFVAQDLVALAPALVIVLGADVGTALMARILTF
                     DLSWLSPLLIFIGVIFFLGRKQSRAGQLGRVGIGLGLILLALELIVQAVTPITQANGV
                     QVIFASLTGDILLDALIGAMFAIISYSSLAAVLLTATLTAAGIISFPVALCLVIGANL
                     GSGLLAMLNNSAANAAARRVALGSLLFKLVGSLIILPFVHLLAETMGKLSLPKAELVI
                     YFHVFYNLVRCLVMLPFVDPMARFCKTIIRDEPELDTQLRPKHLDVSALDTPTLALAN
                     AARETLRIGDAMEQMMEGLNKVMHGEPRQEKELRKLADDINVLYTAIKLYLARMPKEE
                     LAEEESRRWAEIIEMSLNLEQASDIVERMGSEIADKSLAARRAFSLDGLKELDALYEQ
                     LLSNLKLAMSVFFSGDVTSARRLRRSKHRFRILNRSYSHAHVDRLHQQNVQSIETSSL
                     HLGLLGDMQRLNSLFCSVAYSVLEQSDEDEGWDEY"
     gene            complement(5920..>6640)
                     /locus_tag="JN125_003583"
     CDS             complement(5920..>6640)
                     /locus_tag="JN125_003583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000096005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873215.1"
                     /translation="AEKTLNPRGVVGLFPANRVGDDIEIYRDETRTHVINVSHHLRQQ
                     TEKTGFANYCLADFVAPKLSGKADYIGAFAVTGGLEEDALADAFEAQHDDYNKIMVKA
                     LADRLAEAFAEYLHERVRKVYWGYAPNENLSNEELIRENYQGIRPAPGYPACPEHTEK
                     ATIWELLEVEKHTGMKLTESFAMWPGASVSGWYFSHPDSKYYAVAQIQRDQVEDYARR
                     KGMSVSDVERWLAPNLGYDAD"
BASE COUNT         1493 a         1797 c         1785 g         1565 t
ORIGIN      
        1 gtaccctaca aatcattgct atatttcttt tttcctgtat tgccggaatg ggcagcgtgc
       61 tggatgaatt tcagactcat cgcccgttaa ttgcctgtac ggtgattggt ttaattctcg
      121 gtgatttaaa aaccggaata atactcggtg gtacgctgga attgatagct ctcggctgga
      181 tgaacgtcgg cgcggcgcaa tctccggatt ctgcactcgc cagcataatc tccgccattc
      241 tggttatcgt tggtcagcaa agcatcgcca ccggaatcgc catcgcgttg cctgtggctg
      301 cggcaggcca ggtgctgact gtgtttgccc gtaccatcac cgtagtgttc cagcacgcgg
      361 cggataaagc agcggaagaa gcacggtttc gcactctcga tattctgcat gtctccgcgt
      421 ttggcgtgca ggcgctgcgc gttgctattc cggcactgat tgtctcactg ttcgtcagcg
      481 ccgatatggt gagcaatatg ctgagcgcga taccggaatt cgtgacgcgc ggtctgcaaa
      541 ttgctggcgg ttttatcgtg gtggtcggtt acgccatggt gctacgtatg atgggcgtga
      601 aatatttgat gcctttcttt ttcctcggtt tcctcgcagg tggctacctc gatctcagtc
      661 tgctggcgtt cggtggcgtc ggcgtgatca tggccctggt ctacatccag ctaaatccac
      721 agtggcgtaa agctgaacct caactccagg ccaccgcctc caccgccctt gaccaacttg
      781 acgattaacg gagccatcat ggaacagaga aaaattacac gcagcgatct ggtgagcatg
      841 tttctgcgct ccaacctgca acaggcgtcc tttaactttg aacgtattca cgggctgggt
      901 ttttgctacg acatgatccc cgccatcaaa cgactttacc cattaaaaga ggatcaggtt
      961 gcggcgctca ggcgacacct ggtgttcttc aataccacgc cagccgtatg tggcccggtc
     1021 atcggcgtca ctgccgccat ggaagaggcg cgggccaacg gcgcggaaat tgatgacggt
     1081 accattaacg gcatcaaagt cggtctgatg ggactattgg caggagttgg cgatccactg
     1141 gtctggggaa cgctgcgccc gattaccacc gcgctcggcg catctctggc actttcgggc
     1201 aacattctcg gcccgctgct gttcttcttt attttcaatg cggtgcgtct ggcgatgaag
     1261 tggtatggcc tacagctcgg ctttcgcaaa ggggtgaata tcgtcagcga tatgggcggg
     1321 aatgtgctgc aaaaactcac cgaaggcgcg tcgattctcg ggctgtttgt gatgggcgtg
     1381 ctggtcacca aatggacgtc aatcaacgta ccgttggtgg tttcacaaac gcatgccgcc
     1441 gatggctcca ccgtcaccat gaccgtgcag aacattctcg accaactttg ccctggtttg
     1501 ctggcgctcg gtctgacgct gcttatggtt cgtctgctca acaaaaaaat taacccggta
     1561 tggctgattt tcgccctgtt tggcttaggg attatcggta atgcgctggg cttcctgtcc
     1621 agattcttcg ccccggcacg actgccgggg ccatcgctca acatgaggtg gtttatgaaa
     1681 acaacagctc tgcgtcttta tggtaaacgt gatttacgcc tggaaacctt tgaccttcct
     1741 gaaatgcagg aggatgaaat cctcgcgacg gtggtcactg acagcctgtg cctctcttcc
     1801 tggaaagagg ccaatctggg tgaaaaccat aaaaaagtac ccgacgatgt ggcgcccccc
     1861 cccccatcat catcggccac gagttttgcg gcgatattct ggccgtgggt aaaaagtggc
     1921 agcacaaatt ccagccgggt cagcgttatg tgattcaggc caacctgcaa ctccccgacc
     1981 gcccggactg ccccggctac tccttcccgt gggtgggcgg cgaagccacg catgtggtta
     2041 ttcccaacga ggtcatggaa caagattgcc tgctggcata cgacggcgaa acctattttg
     2101 aaggctcact ggttgaaccg ctttcctgcg tgattggcgc gttcaacgcc aactatcatc
     2161 ttcaggaagg tagttataac cacacgatgg ggattcgccc gcaagggcgc atgctgatcc
     2221 tcggcggcac cggaccaatg ggactgttgg cgattgatta tgcgctacat ggacccgtta
     2281 acccgtcgca gctcgtcatt accgataccg acaacgataa attgagttat gcgcgcaagc
     2341 actatccatc agaaccgcaa acactgattc attatctcaa tgccgccgat gcagcatttg
     2401 atacgctaat ggcgctgagt ggcggtcacg gcttcgatga tattttcgtc tttgtgccta
     2461 atgaaggact ggtgactctc gcctcttcct tgctggcgac agatggttgc ctgaatttct
     2521 tcgccggacc gcaggataaa catttcagcg cgccaattaa tttctacgat gtgcattatg
     2581 catttaccca ctacgtgggc acgtcaggcg gcaataccga cgacatgcgc gcggcggtca
     2641 aactgattga agagaaaaaa gtgcaggccg caaaagtggt aacacatatt cttgggctga
     2701 atgccgcggg cgaaaccacg cttgaattgc ctgccgtcgg cggcggcaaa aagctggtgt
     2761 ataccgggaa atacctgccg ctgacgtcac tcacgcagat tcaggatcaa gcactggcgg
     2821 cgattctggc gcgtcatcag gggatctggt ccggtgaggc ggagcaatat ctgctcactc
     2881 atgcagaggc aatttcccat gattaatcgc gctacttaac tctgcatgtc gctggctggt
     2941 cgccgcggca acttcgcgac ctgatgtgcg gctgattgct gaagcggccc aatgtgcacg
     3001 agaaggataa aaaaacatca gcgccttaag gggcgctcaa attggtggca aagtacacat
     3061 tgtttatgcc ggatgcggaa taaagcttta ttcggcctac ataatctcga aaattcaata
     3121 tattgcagtt atctggtagg tctggtaagc gtagcgcatc aggcaatgct gtgtttgtca
     3181 tcagtctcag ctcccggtgc aatacgggac atcgtgagcc atgtcagtaa gtggttaaat
     3241 tcgcagtggt agcatgcctt ccgtgatttc ttactaaccg gagaagtaat ggaactgctt
     3301 ttattgagta actcgacgct gccgggtaaa gcctggctgg aacatgcact gccgctaatt
     3361 gctgaacagt tgcagggtcg ccgctcagcg gtgtttatcc ctttcgctgg cgtaacgcag
     3421 acctgggatg attacacagc gaaaacggct gcggttctcg ctccgctggg tgtttctgtc
     3481 accggtattc atagcgttgt cgatcccgtt gccgcgattg aaaatgctga gatcgtgatt
     3541 gtcggcggcg ggaatacttt ccagttgctg aaacagtgcc gcgagcgcgg gctgctggca
     3601 ccaattactg acgtggttaa acgtggtgcg ctgtatattg gctggagcgc aggcgctaac
     3661 cttgcttgcc caaccattcg taccaccaac gatatgccga ttgtcgatcc gcaaggtttc
     3721 gatgcgctaa atctgttccc gttgcaaatc aacccgcact tcaccaacgc gctgccggaa
     3781 ggccataaag gtgaaacccg tgagcagcgt attcgcgaac tgctggtcgt cgcgccagaa
     3841 ctgacgatta ttggtctacc ggaaggtaac tggatcacag tgagtaaagg tcacgctacg
     3901 ctgggtggcc cgaacaccac ctatgtgttt aaggccggtg aagaagcggt tccgctggaa
     3961 gctggtcacc gtttttaagt gaattgccgg atgcatgatc cggcatcttg ttcatagtgc
     4021 ctgatgcgac gcttgacgcg tcttatcagg cctacaggat tcacaatatt aatactcgtc
     4081 ccatccttca tcttcatccg actgttccag cacactgtaa gccaccgaac aaaacagcga
     4141 gttcaggcgc tgcatatctc ccagtaagcc taaatgtagc gaactggttt caatgctctg
     4201 cacgttttgc tgatgcaggc gatcgacgtg ggcgtgggaa tagctgcgat taagaatgcg
     4261 aaagcgatgc ttactacggc gcaaacgacg agcgctggtg acatcgccag agaagaacac
     4321 cgacattgcc agctttaaat tactgagcaa ttgctcatag agcgcatcca gttccttcaa
     4381 cccatcaagc gaaaatgccc gccgtgctgc cagtgatttg tcagcaattt cgctgcccat
     4441 gcgctcgacg atatcggagg cctgttcaag gttgagcgac atttcaataa tctccgccca
     4501 gcggcgcgac tcttcctccg ccagctcttc ttttggcatc cgcgccagat acagcttaat
     4561 ggcggtgtag agaacgttga tatcatctgc cagcttacgc agctctttct cctgccgtgg
     4621 ctcaccgtgc atcactttat tcaacccttc catcatctgt tccatggcgt cgccaatgcg
     4681 cagggtttcg cgcgcggcgt tcgccagagc aagcgtgggc gtatccagcg cgctgacatc
     4741 cagatgttta ggccgtagct gggtatccag ttccggttca tcgcgaataa tcgttttgca
     4801 aaaccgtgcc atcgggtcaa caaatggcag catgaccagg caacgtacaa ggttgtagaa
     4861 gacgtggaaa tagatcacca gttccgcttt tggcaatgac agcttcccca ttgtctctgc
     4921 cagcaaatgg acaaacggca ggataatcag gctacccacc agcttaaaca gcagactacc
     4981 cagcgcgaca cggcgggctg cggcattggc ggcactgttg ttgagcatcg ccagcaggcc
     5041 ggaaccgagg ttagcaccaa tcaccagaca gagcgccacg gggaaggaga taatgcctgc
     5101 ggcggtcaga gtcgcggtca gcagtacagc agcaaggctg gagtagctga taatggcgaa
     5161 catcgcgcca atcagcgcat ccagcagaat atcgccggtc agcgaggcaa agatcacctg
     5221 aacgccgttt gcctgggtga tcggcgttac ggcctgcaca atcaactcca gcgccagcaa
     5281 aatcagccca agaccaatac cgacgcggcc cagttgcccg gcgcgtgact gtttgcgtcc
     5341 gaggaaaaaa atcacgccga taaaaataag taacggtgac agccaggata agtcgaaggt
     5401 gagaatacgc gccattagcg ccgtcccgac atctgccccc agcacaatga ccagagccgg
     5461 tgcgagggct accagatcct gagcgacgaa cgaggtcacc agcatggtgg tggcattact
     5521 gctctgtacc agtgcggtaa cgccgatccc cgcgcaaaag gcgagcggct ttttttcgac
     5581 gctccggcta aggacagtac gcaaacgcgc gccgaagacg cgcattacgc cggttcgaac
     5641 aatatgagtc ccccagacca gcagggcgac ggcagaaagc aggtgaagca gcgttaacac
     5701 gagttcaggt tctccttatc gttatatgtt cctgaagcaa ttgaatgacc aaaggaccgg
     5761 aaacacgctg actggcatct ttactgtgcc ttttgacatt cgtttttccg gctaagatta
     5821 ttccagcctg attccagtat aagtgtttca tattaataaa gagacagggc actcattgag
     5881 cgccctgttt gttgtaagga aaagtgacag atttgtgaat cagtccgcgt cataccccag
     5941 attcggtgcc agccagcgct caacatctga gacgctcata cctttacggc gggcatagtc
     6001 ttcaacctga tcgcgctgaa tttgcgccac ggcgtagtac ttgctgtccg ggtggctgaa
     6061 ataccaaccc gaaaccgatg caccgggcca catggcgaaa gattctgtga gtttcatgcc
     6121 ggtatgtttt tccacttcca gcagctccca gatggtggct ttttccgtat gttccgggca
     6181 ggccgggtag cccggtgccg gacggatgcc ctggtagttt tcgcggatca gttcttcgtt
     6241 gctgaggttc tcgttcggcg catagcccca gtagacttta cgcacacgct catggagata
     6301 ctccgcaaag gcttcggcta aacggtcggc aagcgctttc accatgattt tgttgtaatc
     6361 atcgtgctgc gcttcaaagg catcagccag tgcgtcctct tccagcccgc cagtcacggc
     6421 aaatgcgccg atgtaatctg ctttaccaga aagcttcggc gcaacgaagt cagcgagaca
     6481 gtagttagcg aatcccgttt tttcggtctg ttgacgcaga tggtggctga cattgatcac
     6541 atgggtgcgc gtttcgtcac ggtagatttc aatgtcatcg cccacacggt ttgccgggaa
     6601 caggcccacc acgccacgcg gattcagcgt tttctcggcg
//
LOCUS       DADMHM010000208         6636 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.211, whole genome shotgun sequence.
ACCESSION   DADMHM010000208 DADMHM010000000
VERSION     DADMHM010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6636)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6636)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6636
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.211"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            1..170
                     /locus_tag="JN125_003584"
                     /pseudo
     CDS             1..170
                     /locus_tag="JN125_003584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(227..646)
                     /locus_tag="JN125_003585"
     CDS             complement(227..646)
                     /locus_tag="JN125_003585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873216.1"
                     /translation="MHQLRHPLLGCVFCNECDPHPFAPDPLQIFHHYYEWGRPCFPIR
                     AGNRFSRSLRWSGPGSCCLHTGCRAVSKQVSSALIRGRLYGPILTSSKISMFHRTVYF
                     RSASRTPRDSRSLPFPESLTTSFLRMKQHRVVWSVLL"
     gene            696..1874
                     /gene="ltrA"
                     /locus_tag="JN125_003586"
     CDS             696..1874
                     /gene="ltrA"
                     /locus_tag="JN125_003586"
                     /EC_number="2.7.7.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005017045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="HAY8873217.1"
                     /translation="MCVATREPPGCDGQTLKMFDQQRDGNLYKIWNRLCSGTWFPPPV
                     LEKRIPKSNGKERILGIPTVSDRIAQGAIKLFMEEKLDSIFHADSYGYRPGKSAHDAL
                     KQCAIRCWRYSWILEVDISAFFDHVKHDLVLKALEHHGMPKWVILYCRRWMEAPMQSC
                     ENGELITRTRGTPQGGVISPLLANLFLHYAFDLWMEREYRGVPFERYADDIVVHCSRM
                     SDATRLKNRLSERFSEVGLVLNAGKTNIAYIDTFKRRNVATSFTFLGYDFKVRTLKNF
                     KGERYRKCMPGASNAAMRKITETIKKWRIHRSTAESLLDFARRYNAIVRGWIEYYGKF
                     WSRNFNYRLWSAMQSRLLKWMQSKYRLSNRKAQRKLTLVRKEYPKLFVHWYLLRASNE
                     "
     gene            1957..2136
                     /locus_tag="JN125_003587"
                     /pseudo
     CDS             1957..2136
                     /locus_tag="JN125_003587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
     gene            complement(2166..2648)
                     /locus_tag="JN125_003588"
                     /pseudo
     CDS             complement(2166..2648)
                     /locus_tag="JN125_003588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016154415.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
     gene            complement(2904..3884)
                     /locus_tag="JN125_003589"
     CDS             complement(2904..3884)
                     /locus_tag="JN125_003589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HAY8873218.1"
                     /translation="MENRKHRPTIGRTLNTNILNNTEEISAPVHVFTLNTGRKAKFTE
                     IKVDHDKVDTQTFVVEEVNGREQTALTPDSLKDITRTIRLQQFYPCIGIRTGDLIEIL
                     DGSRRRAAALLCKVGLRVLVTDDELTVSEAQHLAKDLQTSLEHNIREIGLRLVRLKEA
                     GMNQKQIAEREGLSAAKVTRALQAASVPKDFVSLFPVQSELTYADYRQLAELSERLRL
                     GDISIDEVVKNISPSIELITADDNLSEDEVKNSIMRLITKEMSSLLDSGVKDKAVVTL
                     LWKFDSKDKFARKRVKGRTFSYEFGRLPLEVQDKLDRMIALVLKDNLNSL"
     gene            complement(3884..5083)
                     /locus_tag="JN125_003590"
     CDS             complement(3884..5083)
                     /locus_tag="JN125_003590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HAY8873219.1"
                     /translation="MTSFEQLSKVAQRADKMLLALTKQIQEQKQEFQADVFYQVYSKS
                     AVAKLPKLTRASVDGAVGEMEAQGYQFEKRPAGTATKYALTIQNIIDIYAHRGIPKYR
                     DRYSEAYSIFIGSLKGGVSKTVSSVSVAHALRAHPHLLSEDLRILLLDLDPQSSATMF
                     LNYLHAVGLVDTTAPQAMLQNVSREELLEDFIVPSVIPGVYVMPASIDDAFIASNWDT
                     LCEEHLLGQNKHAILRENIIDKLKHDFDFILIDTGPHLDAFLKNAIAAADIMFTPVPP
                     AQVDFHSTLKYLARLPELVQIIEQDGCSCRLQANIGFMSKLANKSDHKYCHSLTKEIF
                     GGDMLDVSMPRLDGFERSGESFDTVISANPVTYVGSGEALKNARMAAEDFAKAVFDRI
                     EFIRANY"
     gene            complement(5405..5742)
                     /locus_tag="JN125_003591"
                     /pseudo
     CDS             complement(5405..5742)
                     /locus_tag="JN125_003591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            complement(5809..6591)
                     /locus_tag="JN125_003592"
     CDS             complement(5809..6591)
                     /locus_tag="JN125_003592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HAY8873220.1"
                     /translation="MMMELQHQRLMALAGQLQLESLISAAPALSQQAVDQEWSYMDFL
                     EHLLHEEKLARHQRKQAMYTRMAAFPAVKMFEEYDFTFATGAPQKQLQSLRSLSLIER
                     NENIVLLGPSGVGKTHLAIAMGYEAVRAGIQVRFTTAADLLLQLSTAQRQGRYKTTLQ
                     RGVMAPRLLIIDEIGYLPFSQKEAKLFFQVIAKRYEKSAMILTSNLPFGQWDQTFAGD
                     AALTSAMLGRILHHSHVVQIKGESYRLRQKRKAGVIAEANPE"
BASE COUNT         1769 a         1537 c         1591 g         1739 t
ORIGIN      
        1 ctgaactgct ggaaccgctg tatgacatcc tgcgccagta tgtgctgatg cccggtaaag
       61 tccataccga tgatatcccc gttccggtcc tggagccggg cagcggtaaa acaaggactg
      121 cccggctgtg ggtctacgtt cgtgatgacc gtaacgccgg ttcggaaatt gcagcataag
      181 ttatccatgc tctgaggtgg gtggaggtgg gccctccggt cagggtttac aggagcactg
      241 accaaacgac ccggtgctgc ttcattctaa ggaatgaggt ggtgagcgac tcgggaaaag
      301 gcagagatct actgtcacgt ggggttcggg aagctgaacg aaagtaaact gtccgatgaa
      361 acatcgaaat cttagatgat gtcaaaatgg ggccgtacag ccgtcccctg ataagcgcag
      421 aagacacctg cttactgact gcgcggcatc cggtgtgaag gcagcaggat cccgggccag
      481 accatctcag ggaacgtgag aacctgtttc cggcacgtat cgggaaacag gggcggcccc
      541 attcgtagta gtgatgaaag atctgtaatg ggtctggagc gaagggatgg ggatcacatt
      601 cattgcagaa gacacaaccc aaaaggggat gacgtaactg atgcaacgaa aatcatttga
      661 aataccaaaa gcactggtct gggcatcata tctggatgtg cgtcgcaaca agggagcccc
      721 ccggatgcga cgggcagact ttgaaaatgt tcgaccagca acgtgatggc aatctataca
      781 agatctggaa ccggctatgt tcgggaacat ggtttccgcc accagtgctg gaaaaacgga
      841 tcccgaagtc gaatggcaag gaacgcattc tggggatccc aacagtatcc gatcgaattg
      901 ctcagggagc gataaaactt ttcatggaag aaaagcttga ctcgattttc catgctgatt
      961 catatggtta ccgaccaggc aaatcagctc atgacgctct gaaacaatgt gccatccggt
     1021 gctggcgtta tagctggata ctggaagtgg acatcagtgc gtttttcgac catgtgaaac
     1081 atgatctggt gctcaaagct ctggaacacc acgggatgcc taaatgggtc atcctgtact
     1141 gtcgacgctg gatggaagcg ccaatgcaga gttgtgaaaa tggagaatta ataacccgaa
     1201 cacgaggcac tccgcagggc ggggtcatta gtccgctact tgctaacttg ttccttcact
     1261 atgcatttga tttgtggatg gaaagagaat atcggggggt accgtttgag aggtacgctg
     1321 acgatattgt agtacattgt tcacgaatga gtgatgcaac aaggctaaag aacaggttat
     1381 cggagcgctt ctcggaagtc gggctggtcc tgaatgcagg gaaaacgaat atcgcctaca
     1441 ttgacacgtt taaaaggaga aacgtcgcaa cgagtttcac ctttctcgga tatgacttca
     1501 aagtgcgtac gctgaagaat ttcaaaggcg aacggtaccg aaaatgcatg ccgggtgcgt
     1561 caaatgcagc aatgcgcaaa ataacagaaa caatcaagaa gtggcgtata catcgctcaa
     1621 cagctgagag tttgctggat tttgcgaggc gctacaatgc gatagtgaga ggctggatcg
     1681 agtactacgg aaagttctgg tccagaaatt tcaactatcg actgtggagt gcaatgcagt
     1741 cacgtctgct caagtggatg cagtctaaat acagactttc gaaccggaag gctcagcgaa
     1801 agctgacgct ggtaaggaag gagtatccga agctatttgt tcactggtat ttactacgtg
     1861 catcaaatga gtgatcaaga gccgtatgac gcgagagtgt cacgtacggt tccgtgagca
     1921 gccggggagt gaaattctct ccggctgact cgactcgcgg gttccgacag cgatgacgaa
     1981 catgcggcgg tgttgtactc gctgatcggc acatgccgtc tgaacaatgt ggaaccagaa
     2041 aaatggctgc gttacgtcat tgagcatatc caggactggc cggcaaaccg ggtacgtgat
     2101 ctgttgccct ggaaagttga tctgagctct cagtaaatat caatacggtt ctgacgagcc
     2161 gcttactttt ggcgtaattc tgctgcgcct ttactgaaca caatgccgta ttcagcaaga
     2221 agtccacgaa tgtgatttat cagttgtgtc ctttccattg aaaccaaccg acgcatattc
     2281 aaaaaagtct ggacgtcctg ttgctccaga gtttttattg gtacgggtcg tatagttcca
     2341 tgttggcagg cctcagctat tgcctgtgcg tcgttataat catttttctg gcaccgctga
     2401 taagctttaa catgttgtgc cggaagcaat attacatcat ggtcgagttt cctgatttcc
     2461 cgggcccagt aatgagatgc cccgccagcc tccatcgcaa cagtcatttt aggctgttgc
     2521 accagccagt taagcagttg attgcgagaa agtttggtct ttcctgcggg tttgccatga
     2581 gcattgatac tgaaaagata aaagttcgtt ttagccagat caatgccggt gattttctgt
     2641 tcagacatgg tattccgctt acttttgtgg ttaaagttta tccatcatgg cgcaattgaa
     2701 ggctgccgtg aaagaggggg aagactatct catcggttac tgttaaacgg ctaagagaaa
     2761 ctatcttttt caagcaaaga agatacggtg aaacaggcga tttcaccgtg aaatactgtt
     2821 caaaaaaaac gctaataaaa gcaaaatttc ttttaaaaca gccaattaaa aactggtgag
     2881 ttgctggcga aaaacttgaa ttttcacagc gaattcagat tatcttttag tacaagagca
     2941 atcatacgat ctaacttatc ctgaacttcc aacggtaatc tgccgaattc atatgagaac
     3001 gtacgtccct ttactcgttt tcgagcaaat ttatctttac tatcaaattt ccataacaaa
     3061 gttacaaccg ctttatcctt tactcctgaa tcaagcaatg aagacatttc cttggttata
     3121 agccgcataa tactgttttt aacctcgtct tcagaaagat tgtcatcagc agtaataagc
     3181 tcaatactcg gcgagatatt cttcacaact tcatcaatag atatatcacc cagcctcagt
     3241 cgttcactta attcagccag ttgcctgtaa tcggcgtatg tcagctcaga ctgaacagga
     3301 aaaagagaca caaaatcttt aggtacggac gctgcttgga gggcacgagt caccttagct
     3361 gccgacaatc cctctctttc cgcaatttgc ttctggttca taccggcctc tttgagacgt
     3421 actaaacgca acccaatttc acgaatatta tgttcaagtg acgtctgcaa atctttcgcc
     3481 agatgctgag cttcagaaac agtaagctca tcatccgtta caagtacacg taatccaacc
     3541 ttgcatagca aagctgctgc ccgacgacgg gaaccatcca aaatctcaat aagatcgcca
     3601 gtccgaatcc caatacatgg atagaattgt tgtaaacgta tagttctggt gatgtctttt
     3661 agtgagtccg gcgtcagggc tgtctgttcg cggccattca cctcttcaac cacaaaagtt
     3721 tgagtgtcca ctttgtcatg atcaaccttg atctcagtaa attttgcctt tcggccagta
     3781 ttgagggtaa atacatgaac tggagccgat atttcttcag tattattcag gatatttgta
     3841 ttcagcgtac ggccaatagt cggtcggtgc tttctgtttt ccatcagtag ttggccctta
     3901 taaattcaat acgatcaaaa actgctttag cgaaatcttc tgctgccata cgtgcatttt
     3961 tcaaagcttc accactgcca acataagtaa caggattcgc agatatcacg gtatcaaacg
     4021 actcgccgct tctctcaaaa ccatcaagac gtggcattga aacatcaagc atgtcaccac
     4081 cgaaaatctc ttttgtcagg ctatggcagt atttatgatc tgacttattc gccagtttcg
     4141 acatgaagcc aatatttgcc tgcaaacggc atgaacatcc atcctgttca ataatctgta
     4201 caagttcagg taaacgagcc aaatatttaa gcgtggaatg gaaatcaact tgtgctggcg
     4261 gcaccggtgt aaacatgata tctgcggcag caatggcatt tttcaaaaat gcgtccagat
     4321 gcgggcctgt atcaataagg atgaagtcga aatcatgctt cagcttatca ataatattct
     4381 cacgcaatat cgcgtgtttg ttttgtccta atagatgctc ctcgcacaga gtatcccagt
     4441 ttgatgcaat aaaggcgtcg tcaatagaag ccggcataac ataaacgcca gggataactg
     4501 acggaacgat aaaatcttcc agtaattcct cacgactcac gttctgcaac atagcctgcg
     4561 gtgcggttgt atcaaccagc cccaccgcat gcaagtagtt cagaaacata gtggctgatg
     4621 actggggatc taaatcaagg agcagaatac gtaaatcttc tgacagcagg tgaggatgag
     4681 cacgcagggc gtgagctacg gaaacactac tcacggtttt agacacaccg ccttttagac
     4741 taccgatgaa tatggaatat gcctcactat aacgatcgcg atatttagga atgccacgat
     4801 gtgcatagat atcgataatg ttctggatgg ttaatgcata ttttgtcgcg gttcctgctg
     4861 ggcgtttttc aaactgatag ccctgagcct ccatctcacc gactgcacca tccacgcttg
     4921 cgcgcgttaa ttttggaagc ttagctacag cagactttga atagacttga taaaaaacat
     4981 cagcctgaaa ctcctgcttt tgctcctgaa tctgttttgt tagggcgagc aacattttat
     5041 ctgcacgctg cgcaacctta cttaactgct caaaactagt cattccccct ccgtgctatg
     5101 taggatttta acttattaca aaaaaaactg cattagcagg gtaatgcatg caagtgcata
     5161 ttgtacatgc ttatattaaa aatgcgcgca ttgctgattt attaatcatc ggaatgaata
     5221 ttactgtaag atagtatgcc tttccgggag aaagacgctg atttcccccg aataatccag
     5281 ttcaccacca cactccggac aacagctttc ttcaggctcc agatggtata tttcgcggga
     5341 aacatgttcc ggtaacggac ggcgatgacg tgactgtcgc aacaggcggg ggtagtgctt
     5401 ccaatcagta gaacatgtgc ttttcaatga aggagccgat gactttttcg tggatttcca
     5461 cggaacgcga gaagcagatt gttttacgtg ccagccgctt gatgcgggtg cggagggtcc
     5521 ggttgttacg ttcaatacgt tgcgtgaaga ttttgccggt caggtgtttc tccttcggca
     5581 cttctctggc gtagctgccc cagtcatcgc ggtcaccatg ccgatacaga acggagtcaa
     5641 cagggctaac agttcccgac aggtctcatc attccgtggc ccgaaagtgt aagccaacac
     5701 accgccagtt ttagtgttgt acgcatacca gagccagtgt tgtgtcaacg acggatgaaa
     5761 agtgatccac ttatatctcc accaacggcc caatattgat ccaccgtttt actcaggatt
     5821 agcttctgct ataaccccgg cctttcgttt ctgtctgagt cgatagcttt ctcctttgat
     5881 ttgaacgaca tgtgagtggt gtaagatacg gcccagcatc gctgaggtca gtgctgcatc
     5941 accggcgaac gtttgatccc actgcccgaa cggtagattg gatgtcagga tcattgcgct
     6001 cttttcataa cgtttagcga tgacctggaa gaacagtttt gcttctttct gactgaacgg
     6061 cagatagcct atttcatcaa tgatgagcag gcggggggcc attactccac gctgaagcgt
     6121 cgttttataa cggccctgac gttgtgccgt agataactga agtaacagat ctgctgctgt
     6181 tgtgaagcga acttggatac ctgcacggac tgcttcatag cccatcgcta ttgccagatg
     6241 ggttttcccc acacctgatg gccccagtaa tacgatattt tcattacgtt ctatgaggct
     6301 gagtgagcgt aacgactgga gttgcttctg cggtgctccg gtggcgaatg tgaagtcata
     6361 ctcttcgaac attttcaccg ccgggaaggc tgccattcgg gtatacatcg cctgtttacg
     6421 ttgatgacgt gccagttttt cttcatgaag cagatgctcc aggaagtcca tataactcca
     6481 ttcctggtct actgcctgtt gtgacagcgc aggcgctgcg cttataaggc tttccagttg
     6541 caactgcccg gcgagcgcca tcagtcgttg atgttgcagt tccatcatca cgccactcct
     6601 ctgcagaatg agtcgtagat ggagagtgga tgatgc
//
LOCUS       DADMHM010000209         6620 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.212, whole genome shotgun sequence.
ACCESSION   DADMHM010000209 DADMHM010000000
VERSION     DADMHM010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6620)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6620)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6620
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.212"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            528..1304
                     /gene="exuR"
                     /locus_tag="JN125_003593"
     CDS             528..1304
                     /gene="exuR"
                     /locus_tag="JN125_003593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ExuR"
                     /protein_id="HAY8873221.1"
                     /translation="MEITEPRRLYQQLAADLKERIEQGVYLVGDKLPAERFIADEKNV
                     SRTVVREAIIMLEVEGYVEVRKGSGIHVVSNQPRHQQAADNNMEFANYGPFELLQARQ
                     LIESNIAEFAATQVTKQDIMKLMAIQEQARGEQCFRDSEWDLQFHIQVALATQNSALA
                     AIVEKMWTQRSHNPYWKKLHEHIDSRTVDNWCDDHDQILKALIRKDPHAAKLAMWQHL
                     ENTKIMLFNETSEDFEFNADRYLFAENPVVHLDTATSGSK"
     gene            1649..2311
                     /locus_tag="JN125_003594"
     CDS             1649..2311
                     /locus_tag="JN125_003594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HAY8873222.1"
                     /translation="MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLP
                     AAFLPGDSLLVLVGVLIAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNW
                     LSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMS
                     GLLWVLILTTLGYMLGKTPVFLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGN
                     RG"
     gene            2315..2698
                     /gene="mzrA"
                     /locus_tag="JN125_003595"
     CDS             2315..2698
                     /gene="mzrA"
                     /locus_tag="JN125_003595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EnvZ/OmpR regulon moderator MzrA"
                     /protein_id="HAY8873223.1"
                     /translation="MQIPRMSLRQLAWSGTVLLLVGTLLLAWSAVRQQESTLAIRAVH
                     QGTTMPDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYI
                     IAQQDNNSQAMQWLTRLRDNSHRFG"
     gene            2845..3213
                     /locus_tag="JN125_003596"
     CDS             2845..3213
                     /locus_tag="JN125_003596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417568.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1090 domain-containing protein"
                     /protein_id="HAY8873224.1"
                     /translation="MKYRIALAVSLFALSAGSYATTLCQEKEQNILKEISYAEKHQNQ
                     NRIDGLNKALSEVRANCSDSQLRADHHKKIAKQKDEVAERQQDLAEAKQKGDADKIAK
                     RERKLAEAQEELKKLEARDY"
     gene            3251..3556
                     /locus_tag="JN125_003597"
     CDS             3251..3556
                     /locus_tag="JN125_003597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF883 domain-containing protein"
                     /protein_id="HAY8873225.1"
                     /translation="MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAE
                     QALKQSRYRLGETGDAIAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR"
     gene            3559..3963
                     /locus_tag="JN125_003598"
     CDS             3559..3963
                     /locus_tag="JN125_003598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873226.1"
                     /translation="MADTHHAQGPGKSVLGIGQRIVSIMVEMVETRLRLAVVELEEEK
                     ANLFQLLLMLGLTMLFAAFGLMSLMVLIIWAVDPQYRLNAMIATTVVLLLLALIGGIW
                     TLRKSRKSTLLRHTRHELANDRQLLEEESREQ"
     gene            3953..4252
                     /locus_tag="JN125_003599"
     CDS             3953..4252
                     /locus_tag="JN125_003599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873227.1"
                     /translation="MSSKVERERRKAQLLSQIQQQRLDLSASRREWLEATGAYDRRWN
                     MLLSLRSWALVGSSVMAIWTIRHPNMLVRWARRGFGVWSAWRLVKTTLKQQQLRG"
     gene            4348..4830
                     /locus_tag="JN125_003600"
     CDS             4348..4830
                     /locus_tag="JN125_003600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DoxX family protein"
                     /protein_id="HAY8873228.1"
                     /translation="MILSIDSNDANTAPLHKKTISSLSGAVESMMKKLEDVGVLVARI
                     LMPILFITAGWGKITAYSGTQQYMEAMGVPGFMLPLVILLEFGGGLAILFGFLTRTTA
                     LFTAGFTLLTAFLFHSKFAEGVNSLMFMKNLTISGGFLLLAITGPGAYSIDRLLNKKW
                     "
     gene            4900..5886
                     /locus_tag="JN125_003601"
     CDS             4900..5886
                     /locus_tag="JN125_003601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708909.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase family protein"
                     /protein_id="HAY8873229.1"
                     /translation="MGQLIDGVWHDTWYDTKSTGGKFQRSASAFRNWLTADGAPGPTG
                     TGGFIAEKDRYHLYVSLACPWAHRTLIMRKLKGLEPFISVSVVNPLMLENGWTFDDSF
                     PGATGDTLYQHEFLYQLYLHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNTAF
                     DALGAKAGDYYPPALQTKIDELNGWIYDTVNNGVYKAGFATSQQAYDEAVAKVFESLA
                     RLEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTHFKCDKHRISDYLNLYGFLRD
                     IYQMPGIAETVNFDHIRNHYFRSHKTINPTGIISIGPWQDLDEPHGRDVRFG"
     gene            6179..6544
                     /locus_tag="JN125_003602"
     CDS             6179..6544
                     /locus_tag="JN125_003602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HAY8873230.1"
                     /translation="MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKML
                     GWQRAGGEGILTTIYGILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIIIVFN
                     CQAGTPGENRFGPDPKLEP"
BASE COUNT         1699 a         1581 c         1630 g         1710 t
ORIGIN      
        1 atttaatctc aacttcattt tcctgaggcg tagatggatt atcgatacgg aatactgtcg
       61 ccttgatgta ctgaacttca ttacttttag atattacgcg aacgttgcct tcatcctgac
      121 tattaatgga aacagccata ggataaacag tcatatttga ctgtgccaaa aaaggagcga
      181 acacgaataa aagcggcgta agccgtgata agagattaat tttcgccacc atataaattt
      241 gatcttacaa tattgtttcc aaaaagttgg tgtattagag atgtagattt attgtaagtc
      301 aatataaaaa agcattttta gttaatatta aatttaaagg ctgggaatta acttactgaa
      361 atttagtagt tttcacaatg acgatactta ttttttagga atttataaat attcacaata
      421 ttaattcaat acattaattc aatcaccaaa tttatatatg accaatggca tacccatgaa
      481 taaagtggta tgataacttc gtccgcattc cactccggga gacgcatatg gaaatcactg
      541 aaccacgccg tttgtatcaa caacttgccg ctgacctgaa agagcgcatt gaacagggcg
      601 tctatctggt gggtgataaa ctgcctgccg aacgctttat tgccgatgaa aagaacgtca
      661 gccgaacggt agttcgtgaa gccatcatca tgctggaagt tgaaggctat gtggaggtgc
      721 gtaaaggttc aggtattcat gtggtttcca accagccgcg ccatcagcag gcggctgaca
      781 ataatatgga attcgccaat tacggtccgt ttgagttgct tcaggctcgc cagctcatcg
      841 aaagtaatat tgccgagttc gcggcaactc aggtaacgaa acaagacatc atgaaactga
      901 tggccattca ggaacaggcg cgcggcgaac aatgcttccg tgattccgag tgggatttac
      961 agttccacat tcaggtagcc ctggcgacgc agaactccgc cctggcggcc atcgttgaaa
     1021 aaatgtggac ccagcgtagc cataacccgt actggaaaaa actacacgaa cacattgatt
     1081 cccgtaccgt tgataactgg tgtgatgacc acgatcaaat tctcaaggcg ttaattcgca
     1141 aagatcccca tgctgctaag ctggcaatgt ggcagcatct ggaaaacacc aaaatcatgt
     1201 tatttaacga aaccagcgag gatttcgagt tcaatgccga ccgctatcta ttcgccgaaa
     1261 acccggtagt gcatctcgat acggccacca gtggcagtaa atgaaactcc tgtccgacag
     1321 gcgctgcgac gcgcctgttc gcttcgtcgg taagcgaaaa gtataaagtg tcagcctgtg
     1381 taaatcctct cgccaccctc ccctgcattc agcaaaatca gactccacgg acatgtaatt
     1441 ttgataacga acaacgttga cctttgttac aattagattc aatttgaatt tatgtttttg
     1501 aatgctttct tatctcacga tttaacagga aatagttcag gctgtgttga tgtatcaaac
     1561 ccgcagaaca taccaaaaca gcaataacat tgcggtagtg catcttttaa aaccagcgtg
     1621 gcgttaaccg attcaccagg aataatgaat ggaacttttg acccaattgc tgcaagccct
     1681 gtgggcgcag gattttgaaa ccctggccaa tccatcgatg attggcatgt tgtattttgt
     1741 cttgtttgta attttgttcc ttgaaaacgg cttgcttcca gcggcctttt taccgggcga
     1801 cagtttactg gtattggtcg gcgtgttgat tgcgaaaggc gcgatgggtt acccgcaaac
     1861 gattctgctg ctgaccgttg ccgccagcct cggctgctgg gtcagctata ttcaggggcg
     1921 atggctgggc aatacccgca ccgtacaaaa ctggctatct catttacccg cgcattatca
     1981 tcaacgcgca caccatcttt ttcataaaca cggtttatcg gcgctgttaa ttggtcgctt
     2041 tattgcgttt gtcagaacac tgctgccgac gattgccggg ttatcagggc tgaataacgc
     2101 gcgctttcag tttttcaact ggatgagcgg tctgctgtgg gtattgatcc tgacaactct
     2161 gggttacatg ctcggcaaaa cgccggtatt tttaaagtac gaggaccagc tgatgtcatg
     2221 cctgatgctg ctcccggtgg tgctgctggt gtttggcctg gcaggttctc tggtcgtgtt
     2281 atggaaaaag aaatatggaa atcgggggta agggatgcaa atacctcgca tgtcgcttcg
     2341 ccagctagcc tggtccggca ctgttttact tctggtcggc acgctgttgc tggcctggtc
     2401 cgcggttcgc cagcaagagt ctacgctggc gattcgtgcc gttcatcaag gcacaacgat
     2461 gccagacggt ttttcgatct ggcatcacct tgacgctcat ggcattcctt tcaaaagtat
     2521 cacccccaaa aacgacactc tgttaattac atttgactcc agcgaccaga gcgccgccgc
     2581 aaaagcggtc ctcgacagaa cattgcccca tggctacatc attgcgcagc aggacaataa
     2641 cagtcaggct atgcagtggc tgacccggtt acgggataac tctcatcgct tcggataact
     2701 tcctgttatc cgaaacatat cactcacttt ggtgatttca ccgtaactgt ctatgattaa
     2761 tgaggcggtg gttaacacta ccgcttcgtt gtctggacaa tcgttccttt gtaataggtc
     2821 cgaatcacaa tggaaggttc aagaatgaaa taccgcatcg ctttagctgt ttctctcttt
     2881 gctcttagtg ccggtagtta tgccactacc ctgtgtcagg aaaaggagca aaatatcctt
     2941 aaggagatca gctatgccga aaaacaccaa aaccagaatc gtattgacgg tctgaataaa
     3001 gccctgagtg aagtccgggc caactgttca gatagccagc tgcgtgccga tcatcacaag
     3061 aaaatcgcaa agcagaaaga tgaggtggcg gaacgccagc aagatttagc cgaggcgaag
     3121 caaaaaggcg atgccgataa gattgccaaa cgcgaacgga aactggcaga agcgcaggaa
     3181 gagctgaaaa agctggaagc gcgcgactac taactcacaa tagtcactac ttactcacct
     3241 ggagaaaact atgtcgaaag aacacactac ggaacatctg cgtgctgagt tgaaatccct
     3301 ttccgatacg ctggaagagg tgcttagctc atctggcgag aagtcgaaag aagagttgag
     3361 taagattcgt agcaaagcgg agcaggcact gaaacagagc cgttatcgcc tgggtgaaac
     3421 cggtgatgcc atcgccaaac aaacccgtgt cgcggcggcg cgtgctgatg agtatgtgcg
     3481 tgaaaatccg tggaccggcg tgggaattgg cgctgcaatc ggtgtagtgc tcggcgttct
     3541 gctgtcgcgt cgttaattat ggcggacact catcacgcgc aagggcccgg taaaagcgtt
     3601 ctgggcatcg ggcagcgaat tgtttccatc atggttgaaa tggtggaaac acgtctgcgg
     3661 ctggcggtgg tggagctgga agaggaaaaa gctaatctct ttcaactttt actgatgctg
     3721 ggcctgacga tgcttttcgc tgcatttggt cttatgagcc tgatggtgct aattatttgg
     3781 gcggttgatc cgcaatatcg cctgaatgcg atgattgcca ccaccgtggt gttgctgcta
     3841 ctggcactga tcggcggtat ctggacgtta cgtaaatcgc gtaaatccac cttgctgcgc
     3901 catacacgcc atgagctggc aaacgatcgg caactgctcg aggaggagtc ccgtgagcag
     3961 taaagtcgaa cgtgaacgac gtaaggcgca actgcttagc cagatccagc aacaacggct
     4021 ggatctttcc gccagtcgtc gtgaatggct ggaggcaaca ggcgcttacg atcgtcgctg
     4081 gaatatgctg ctaagtctgc gctcctgggc gctggttggc agtagcgtga tggcgatctg
     4141 gacgattcgc catcctaata tgctggtccg ctgggccaga cgcggttttg gcgtatggag
     4201 cgcctggcgt ctggttaaaa cgaccctcaa gcagcaacag cttcgcggtt aacttccctc
     4261 tggccggagc cattccggcc ttatccctca aattttttga agatttttga cagttttcct
     4321 tgctaacaat catcattcac cacgtttatg attctctcca tcgacagcaa cgacgctaat
     4381 accgcgccct tgcacaaaaa aacaatcagc agcctgagtg gcgcagtgga gagtatgatg
     4441 aaaaaattag aagatgttgg tgtactggta gcgcgcattt taatgccgat tctgtttatt
     4501 accgcaggct ggggaaaaat caccgcttac tctggtaccc aacaatatat ggaagcaatg
     4561 ggtgtcccgg gttttatgct gccgctggtg attctgcttg agttcggtgg tggtctggct
     4621 atcctgttcg gtttcctgac tcgcaccaca gccctgttta ctgcgggctt tacgctgctg
     4681 acggcatttt tatttcacag caagtttgct gaaggcgtca actcgctgat gttcatgaaa
     4741 aacctgacaa tttctggcgg attcctgctg ctggcaatta ccggtccggg cgcgtatagc
     4801 atcgaccgcc tgctgaataa aaagtggtaa gcacgcgcta tacttaacga taaaaaacga
     4861 ggaggaagct cctcgttttt gctattggag gagagaaaaa tggggcaact gattgacggc
     4921 gtctggcatg acacctggta cgataccaaa tctaccggcg gtaaatttca acgttcagct
     4981 tccgcatttc gtaactggct cactgccgat ggcgcacctg gccccactgg cacaggcggt
     5041 tttatcgcag agaaagatcg ttatcatctc tatgtttcac tcgcctgccc gtgggcgcac
     5101 cgcacgctga tcatgcgcaa actcaaagga ctggaaccgt ttatttccgt ttccgtagtg
     5161 aacccgctga tgctggaaaa cggctggacc tttgatgaca gttttccggg agcaaccgga
     5221 gatacgctct atcaacatga atttctgtat cagctttatc tccacgccga tccacactac
     5281 agcggacgag ttactgttcc cgtgctgtgg gacaaaaaga accacaccat tgtcagcaac
     5341 gaatcagcag aaatcatccg catgttcaat accgcgtttg atgcgctggg cgcaaaagcg
     5401 ggtgattact acccaccagc cctgcaaacg aaaattgacg aacttaacgg ctggatttat
     5461 gacaccgtta acaacggcgt gtataaagct ggttttgcca ccagccagca agcctacgac
     5521 gaggcggtgg cgaaagtgtt tgaatcgctg gcgcgactgg agcagatttt aggccagcat
     5581 cgttacctga ccggcaacca gctaaccgaa gccgatattc gcctgtggac tacgctggtg
     5641 cgttttgatc cagtgtatgt gacccacttc aagtgtgata agcaccgcat cagcgattac
     5701 ctgaatctgt atggcttcct gcgcgatatc taccagatgc cggggatcgc cgaaactgtc
     5761 aatttcgatc acatccgtaa tcattacttc cgcagccata agaccatcaa ccctacgggg
     5821 attatttcaa ttggtccgtg gcaggatctc gatgaaccgc atggacgaga tgttcgcttc
     5881 ggttaaaaaa aggcacctta cgaggtgcct ctgataatta gctaagtgca tgttgttcat
     5941 gtcggatgcg gcgtgaacgc cttatcaaac ctacacaacg tttatattca atatgttaaa
     6001 atgaccgcgt aggccagata agcgtagcgc atctggcgat tttgcgcttg tcatcagtct
     6061 tagcgcacct tcacggcact ttattaattc cttgaacgaa tatttactgc catttcattc
     6121 acgtctattc ttaatttgct gctttaaaaa caagtgattg agcaaaattg aggcaaaaat
     6181 ggactggtat ctgaaagtac taaaaaatta tgtcggtttc cggggtcgtg cgcggcgcaa
     6241 agagtactgg atgtttattc tggtcaacat catctttacg ttcgtgctgg ggctgctgga
     6301 taaaatgtta ggctggcaac gcgccggtgg cgaaggcatc ctgacgacaa tctacggtat
     6361 tctggtgttt ttaccgtggt gggcggttca gttccgccgc ctgcacgaca ccgaccgctc
     6421 ggcgtggtgg gcactgttgt tcttaatccc gtttatcggc tggcttatta tcatcgtctt
     6481 taactgccag gcgggtacgc caggcgaaaa ccgctttgga ccagatccga aactggaacc
     6541 ttaaaacaaa tctgctcgcc ggatgtctga ctcatccggc ttttatcatc atgttgatga
     6601 atgaataatt tactaatgtt
//
LOCUS       DADMHM010000210         6603 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.213, whole genome shotgun sequence.
ACCESSION   DADMHM010000210 DADMHM010000000
VERSION     DADMHM010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6603)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6603)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6603
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.213"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(1..456)
                     /locus_tag="JN125_003603"
                     /pseudo
     CDS             complement(1..456)
                     /locus_tag="JN125_003603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310671.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail tube protein"
     gene            complement(456..1640)
                     /locus_tag="JN125_003604"
     CDS             complement(456..1640)
                     /locus_tag="JN125_003604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail sheath family protein"
                     /protein_id="HAY8873231.1"
                     /translation="MSETRFHGARVTENTDLVTAINDVDSSVIGIVATADDADAKLFP
                     LNKPTLLTRVNDVLGKCGTTGTLYRALKAIADQVSTKVIVVRVAEHKEEDGKTQDQLV
                     IGGSEDDGSYTGMYALLVAEQDESIGYRPRILAAPELDTEAVTKSLCVIADKLRAFVY
                     ASCHGCNTMAEAITYRQKFNEREVMLLWPDFIAYNPKNGKNETFPAPAYACGLRAYID
                     HEQGWHKSLSNVPVKNVLGMSRHVFWSLQAEDSDANSLNNKEITTIIRRNGVRFWGNR
                     TPETNAYIFEVYTRTAQVLADSIAEAQFETIDSPLTPANVKDVISAIRAKLDSLVTAG
                     KLIGAECWYDVVDNSTTDLRQGRVRIRYKYTPVPPLEDMELYQTFTDEYFEPAFAVLG
                     GA"
     gene            1798..2907
                     /locus_tag="JN125_003605"
                     /pseudo
     CDS             1798..2907
                     /locus_tag="JN125_003605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001494339.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage late control D family protein"
     gene            3156..6275
                     /locus_tag="JN125_003606"
     CDS             3156..6275
                     /locus_tag="JN125_003606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000580159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8873232.1"
                     /translation="MIGQFLSATEILAKNYVRNKMVKNPFYSNLKWNFIEKNIIRLTS
                     SPVKSVLCISAFSFVLLYVGYLNELFIKNNLLHYFPFRHSLTEWQTTILSGQLTIIGI
                     VYPLVIGLVSILFQKKADRKIAQTAYQRYSGFMLAGLSGLFLSGFILLSVLIKTVFGS
                     YLYGIACLISILWLLINIVLSIWFFIVSLEILDDVKRQIIIKRYIAFEIVMPHICNKI
                     SAKLRLYPIYQKHNYSNLEIKQADYKGEYISVASSYSKEDELSLYHRPFQLTLNLINY
                     QLKKKNHFASFVIGDNRTKETESTGKILFSVKNIKPDSLLIKILKQCFYRAPIKGGDF
                     SVSLTMQAITADTYMYLRDSDLISFDNAISALINNFNNLCDLYFFQDDNTNNNFLLIT
                     TELFERSFQYEFSDEAYKISNNSMDKINLSERFFELCLWSGVRIINNRKHLISNELCI
                     YMGITRSQWSILTEWFRNNQSLLNASLRSRYNRILRTYTTVWEQYQESINFRFCNTEN
                     SDLFELFCKTQLQELPSMIIDATQTRDPSTIDTAVDLINRWQHSMNIDSHSVEKYSYK
                     GQLFNPGFFISKKLNFNSDREWFNIAIINALTDMRICTCLYLTSRINTSDKLMTHYIK
                     LILEGKLIDQTGGYETPTEEIDNASQLIKILIRICLWTWSENMEHNGWMNSLARRLRD
                     YDKTDMVMGRVYSNVFDCGFIDMEQSWVQLLLIFSNKNDSVSKEIKEAIENNYITYRE
                     KQRLIGVLSKICNSIEYTKIKLTLTLDDLQTKKENLRKLLQEHINMLKKDLDMRLQDA
                     AIDVHRLDSTARKTSEHLRKRIKKTLPLSLFKSIDFKQASDCFTKHKISIKIDKEPYA
                     EGIESIPYINEGDIQADLILKDIQRIILSNLFSTGCSQHTVIEDFNMLIDHIKSSADL
                     AGKLVLVMSKEIFQQYNRMLFDNPNLRELMRKNDDGSMNITTESGTRKVYFLPFVNQP
                     FSLVVKDNYFTKLIIREYDNNKLVNVTSENIKSDSDKFKLTLNYELNVVFEGNADLKI
                     AHSQRVTSE"
     gene            6411..>6603
                     /locus_tag="JN125_003607"
     CDS             6411..>6603
                     /locus_tag="JN125_003607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001512982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ogr/Delta-like zinc finger family protein"
                     /protein_id="HAY8873233.1"
                     /translation="MFRCPLCGASARIRTSRPENDSNTVRQKYYQCNNLECGVCFSTL
                     EAFHKFTSKHASPIHSSEGI"
BASE COUNT         2003 a         1467 c         1353 g         1780 t
ORIGIN      
        1 ttccggtaaa tgaagttcag caggtcaatc tcccacaacg ggcgatcgtt aacactcagc
       61 ttgtagtagg tgttttaatg gcgtaagtgt gtgatgtggc ttcgccctgt ttggcttccc
      121 ccatatcaat ttccgtcaca cgtccgcgca tttcgacttc atacaggtcg ctttctgcat
      181 cggtgtagta ttcacccgca aaacgcagca gcgtgccgtc aatcgtgccg ccatacttaa
      241 ggaacagctc acgaactgcg cccccatgac aaagctcgca tcaagcgcgg agtcgtccag
      301 accgagatca atacttaccg cacccatcat gccaccaccc cggtagctgt cggttttgcg
      361 cgtcagctta ggcagagtga cggacgtcac attacccact tcgttttcac catccacaaa
      421 cagcgtaaaa aagcgaagat gttttggcac agccatcagg cacctcccag caccgcaaat
      481 gcgggttcaa agtattcatc agtaaacgtc tggtaaagct ccatgtcttc cagtggcgga
      541 acgggcgtat atttgtagcg aatacgcaca cgtccctgac gtaaatccgt ggtgctgtta
      601 tccaccacgt cataccagca ctccgcgcca atcagtttcc cggcagtcac cagtgaatcc
      661 agttttgccc tgatggcact gataacatcc ttcacattcg caggcgtcag tggactgtcg
      721 atggtttcaa actgcgcttc cgcaattgaa tcagccagca cctgtgcggt tcgggtatac
      781 acctcaaaga tgtaggcgtt cgtttccggt gtgcggttac cccagaagcg gaccccgttg
      841 cgacgaataa tggtcgtgat ttctttgttg ttgaggctgt tggcatcgct gtcttcggcc
      901 tgcaacgacc agaacacatg cctcgacatc cccagcacat ttttaaccgg aacgttggac
      961 agcgatttgt gccatccctg ttcatggtca atgtacgcac gaaggccgca cgcataggca
     1021 ggcgcgggga acgtttcgtt tttgccattt ttcgggttgt aggcgatgaa gtccggccat
     1081 aagagcatca cctcacgttc gttgaatttc tggcggtagg taattgcctc ggccatcgtg
     1141 ttacagccat gacatgaggc atacacaaac gcgcgcagtt tatctgcaat cacgcacagg
     1201 gattttgtta ccgcctccgt gtccagctcc ggcgcggcca gaatacgcgg acggtatccg
     1261 atgctttcat cctgctctgc aacaagcagc gcatacatcc ccgtatagct gccgtcatcc
     1321 tcagaaccac cgataaccag ttgatcctgc gtctttccgt cttcttcttt gtgttcagcc
     1381 acgcgaacga cgatcacctt tgtgctcacc tggtctgcga tggccttaag cgcacgataa
     1441 agcgtccccg ttgtcccgca ttttcccagc acgtcattga cgcgggtcag cagtgtgggc
     1501 ttgttcagcg ggaacagctt cgcgtccgca tcatccgccg ttgccacgat accgataacg
     1561 ctggaatcaa catcgttaat cgctgttacc aggtcggtat tctccgtaac acgggcacca
     1621 tgaaaacgag tttcactcat agcttcagcc ccttgtatcc gttaaatgat tcagcaacaa
     1681 tcatcaccca ccacgcgcgt aatctcaccc ctgcgccgtt ctcccgccac ggcgacaaca
     1741 aaaagcagta accccctccg cacgcacatg cgaccatgcc gcacagggag ggagtagatg
     1801 accgacacca ccatgcaatt gctcagtcag ggcacggccc ccgtgaaaat gccggatttt
     1861 gatattctct cggagggtaa aacgctgtca ggcgtggcgg agcgcctgat gagcctgtaa
     1921 ctgaccgaca accggggatt tgaggcggac cagctcacca tcacgctgga tgatgcggat
     1981 ggtcagttgc agctaccgcc acggggcgcg cgtctgacgg ttctcattgg ctggaaaggg
     2041 gaaccgctga cagaaaaagg cacttacatt gttgatgaaa tcgctcacga aggaccgccg
     2101 gacaggctga ctgtttcagc cagaagcgca gattttcggg atgaatttaa cgttaaacgt
     2161 gaggtgtcct ggcatgatgt gaccgttgag cgtgtggtat ccgccatcgc tcatcgatac
     2221 ggtctgaaac cgcaaatcag cgaaatgctg atggatatcg aaatcgacca cgccgaccag
     2281 accgaagaaa gcgacatgtc ctttcttacg cgcatggcgg aaatgctggg agcaatcgcc
     2341 acggtaaaaa gcggcaatct gttattcatc atgccaggtg gtggcgtgaa cgcacagggg
     2401 cagccgttgc cctcgttcgc cattacacgc agcagcggcg atcgccatca gttccgcatt
     2461 gctgaccgcg aggcgtatac gggggtacgc gcctactggc ttgatcttaa ttacgggaaa
     2521 aagaaaaaag tcagcgtgaa acgccgcaaa ccgccaaaac ccaaaaagga gaaaagcagc
     2581 agtcgggaag gcgactatat ggaaggtgcg gaaggcaacg tgtttgtgtt acgcaagact
     2641 tatcagaacg agcaggcagc aagacgcgca gcggcggcaa agtggcagca gctacaacgc
     2701 ggagccgcat cattctccat cacgctggcg cgtggtcgtg cagaactcta tcccgaaatg
     2761 catggcacag tgacaggctt taaaagcgag attgattatc aggactggat tattgcaaaa
     2821 gccgagcaca ccattgataa cagcggcttt accacgcagc ttgaacttga agcaaaaatc
     2881 ccggaatgga tagcagaaac agaataaatc tcttaaaaat attatttttg agatgtgctt
     2941 ctacactgac agtaagaaca aaagataatg tatcagccca ctagatgtca gaggttgggg
     3001 catcaaccag atgctaacaa taatacggat gtttttccca catgacagag gaagtcaagt
     3061 ataatcttca cagtccatcc cgtccaaggg aatatgactc aatagtaaaa gttccagttt
     3121 agttagtaga cccacacttt atagaagagt aattcatgat tggacaattt ttaagtgcaa
     3181 cagagatttt agcaaagaac tatgttcgta ataaaatggt taaaaatcca ttttattcga
     3241 atttaaaatg gaattttatt gaaaaaaaca tcataagatt aacatcctca ccggttaaat
     3301 cagtactttg catatcagct ttttcatttg tactacttta tgttggatat ttaaacgaat
     3361 tatttataaa aaataatctt ttacattatt tcccgtttag gcattcatta accgaatggc
     3421 aaacaaccat tttaagtggc caattgacaa ttattggtat tgtatacccc cttgttatag
     3481 gtttagtaag tatcttattc caaaaaaagg cagatagaaa aatagcccaa actgcttatc
     3541 agcgttactc aggattcatg cttgctggac tcagcgggct tttcttatca ggatttatac
     3601 ttctcagtgt actaattaaa actgtctttg gaagttatct ttatggtata gcttgtctaa
     3661 tcagcatatt atggcttttg ataaacatag ttctttctat ttggttcttt atcgtgagtc
     3721 ttgaaattct tgatgatgta aaacggcaaa taattataaa gcgatacatt gccttcgaaa
     3781 tagtaatgcc ccatatttgt aacaaaatct cagccaagct taggttatac cctatctatc
     3841 aaaaacataa ctattcaaat ttagaaatca agcaagccga ttacaaagga gaatacatat
     3901 ctgtggctag cagttattct aaggaagatg agttaagttt atatcaccgt ccttttcaac
     3961 ttactcttaa tcttattaat taccaactaa aaaagaagaa tcattttgcg tcatttgtca
     4021 ttggtgataa tcgtacaaaa gaaacagaat ccacgggtaa gatacttttt agcgttaaaa
     4081 atatcaaacc agacagctta ttaataaaaa tacttaagca atgtttttat agggctccga
     4141 ttaaaggagg agatttttcc gtaagtctta caatgcaggc tataacagca gatacgtata
     4201 tgtatctgcg ggattctgat ctcattagtt ttgacaatgc tatctctgca ttaattaata
     4261 actttaataa tctctgcgat ttgtattttt ttcaagatga taataccaac aataacttct
     4321 tactgatcac tacagaatta tttgaacgga gttttcaata tgagttttca gatgaagctt
     4381 ataaaatatc aaataattcc atggataaaa ttaatctttc tgaaagattt tttgaattat
     4441 gtctttggag cggagtgcgt attatcaata atagaaaaca tcttatcagc aatgaacttt
     4501 gtatctatat gggaattact cgttcacaat ggtcaatatt aacagaatgg ttccgaaaca
     4561 accaatcact cttaaatgcc tcgcttcgtt cacgttataa tcgtatatta agaacctata
     4621 ccactgtttg ggagcaatat caagaaagca taaactttcg tttctgcaat acagagaatt
     4681 cagatttatt tgaattattt tgcaaaacgc aactacaaga acttccatcg atgattattg
     4741 atgcaacaca gactcgcgat ccttctacta ttgatacagc cgtcgatctt attaaccgat
     4801 ggcagcactc aatgaatatt gacagccatt cggtagaaaa atacagttac aaaggccagc
     4861 tttttaaccc gggttttttc atatccaaaa aactaaactt caattcagac agagagtggt
     4921 tcaatattgc catcataaat gcgttgactg acatgcgtat atgcacatgt ctttatctga
     4981 catcaagaat caatacttct gacaaactaa tgacacatta cattaaactt attttagagg
     5041 gtaaacttat tgaccaaacc ggtggatatg aaactcccac tgaagaaatt gataatgcaa
     5101 gccaactaat caagatatta attagaatct gcctgtggac atggtctgaa aatatggaac
     5161 acaatgggtg gatgaatagt ttagcaaggc gtttacgtga ctatgataaa acagacatgg
     5221 tgatgggcag agtttacagt aatgtttttg actgtggatt tattgatatg gaacaatcat
     5281 gggttcagct attattaatt ttttctaaca agaacgatag cgtatcaaaa gaaataaaag
     5341 aagcaataga aaacaactat ataacatatc gtgagaagca acgactcatt ggagtattat
     5401 caaaaatttg taactccatc gaatacacta aaatcaagct gactttaaca ttggacgatc
     5461 tccaaacaaa aaaagaaaac ttaagaaagt tgcttcaaga gcatattaac atgctaaaga
     5521 aagatcttga tatgagactt caggatgctg ccatagatgt acatcgacta gatagcactg
     5581 cacgtaaaac atcagaacat cttcgtaaac gcatcaagaa aacgctccct ctttcacttt
     5641 tcaaatctat tgattttaag caggctagcg attgtttcac aaaacataag atatctatta
     5701 agatagataa agaaccgtat gccgaaggaa tagaatccat cccttatatc aatgaaggtg
     5761 atattcaagc agacttaatt ctcaaggaca tccagagaat aatactttca aatttattta
     5821 gcactggctg ttcgcaacat accgtaatag aagatttcaa tatgttgatt gatcacataa
     5881 aatcatctgc tgacttggct ggcaaactgg ttcttgtgat gagtaaagag atctttcagc
     5941 aatataatcg tatgcttttc gataatccca acctcagaga actaatgaga aaaaatgatg
     6001 atggctctat gaacataact actgaatccg gtacccgtaa ggtttacttc ttaccatttg
     6061 ttaatcaacc attttctctt gtggtaaagg ataactactt cactaaatta attattagag
     6121 aatatgataa taataagtta gtaaatgtca cttcagagaa tatcaaaagt gactcagata
     6181 aattcaagct aactcttaac tatgagttga atgtagtatt tgaaggaaac gctgatttaa
     6241 aaatagctca ctcgcaaaga gtgacatcag aataatatct ttgacggcgc tccttagagt
     6301 gccgttcgtt tattaactaa tgctaaaaat cattatatag agaaagtcat gtttaaatct
     6361 tagagaatac aacctagaat agtgcaagca ctacaataag agaggtcgct atgttccgtt
     6421 gtccgctttg tggcgcatct gcccgtatcc gcaccagtcg tccggaaaat gattcaaaca
     6481 ccgtgagaca aaagtattat cagtgtaaca atctagaatg cggcgtatgt ttctcaacac
     6541 tggaagcctt ccacaaattc acttcaaagc acgcctcccc cattcactca tcagagggca
     6601 tcc
//
LOCUS       DADMHM010000211         6275 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.214, whole genome shotgun sequence.
ACCESSION   DADMHM010000211 DADMHM010000000
VERSION     DADMHM010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6275)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6275)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6275
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.214"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            244..585
                     /gene="raiA"
                     /locus_tag="JN125_003608"
     CDS             244..585
                     /gene="raiA"
                     /locus_tag="JN125_003608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HAY8873234.1"
                     /translation="MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE
                     PQGFVADATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK
                     DANFVEEVEEE"
     gene            689..736
                     /locus_tag="JN125_003609"
     CDS             689..736
                     /locus_tag="JN125_003609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873235.1"
                     /translation="MKHTPFFFAFFFTFP"
     gene            836..1996
                     /gene="pheA"
                     /locus_tag="JN125_003610"
     CDS             836..1996
                     /gene="pheA"
                     /locus_tag="JN125_003610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional chorismate mutase/prephenate
                     dehydratase"
                     /protein_id="HAY8873236.1"
                     /translation="MTSENPLLALREKISALDEKLLALLAERRELAVEVGKAKLLSHR
                     PVRDIDRERDLLERLITLGKAHHLDAHYITRLFQLIIEDSVLTQQALLQQHLNKINPH
                     SARIAFLGPKGSYSHLAARQYAARHFEQFIESGCAKFADIFNQVETGQADYAVVPIEN
                     TSSGAINDVYDLLQHTSLSIVGEMTLTIDHCLLVSGTTDLSTINTVYSHPQPFQQCSK
                     FLNRYPHWKIEYTESTSAAMEKVAQAKSPHVAALGSEAGGTLYGLQVLERIEANQQQN
                     FTRFVVLARKAINVSDQVPAKTTLLMATGQQAGALVEALLVLRNHNLIMTRLESRPIH
                     GNPWEEMFYLDIQANLESAEMQKALKELGEITRSMKVLGCYPSENVVPVDPT"
     gene            complement(2039..3160)
                     /gene="tyrA"
                     /locus_tag="JN125_003611"
     CDS             complement(2039..3160)
                     /gene="tyrA"
                     /locus_tag="JN125_003611"
                     /EC_number="1.3.1.12"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional chorismate mutase/prephenate
                     dehydrogenase"
                     /protein_id="HAY8873237.1"
                     /translation="MVAELTALRDQIDEVDKALLNLLAKRLELVAEVGEVKSRFGLPI
                     YVPEREASMLASRRAEAEALGVPPDLIEDVLRRVMRESYSSENDKGFKTLCPSLRPVV
                     IVGGGGQMGRLFEKMLTLSGYQVRILEQHDWDRAADIVADAGMVIVSVPIHVTEQVIG
                     KLPPLPKDCILVDLASVKNGPLQAMLAAHDGPVLGLHPMFGPDSGSLAKQVVVWCDGR
                     KPEAYQWFLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAEENVQLEQ
                     LLALSSPIYRLELAMVGRLFAQDPQLYADIIMSSERNLALIKRYYKRFGEAIELLEQG
                     DKQAFIDSFRKVEHWFGDYAQRFQSESRVLLRQANDNRQ"
     gene            complement(3171..4241)
                     /gene="aroF"
                     /locus_tag="JN125_003612"
     CDS             complement(3171..4241)
                     /gene="aroF"
                     /locus_tag="JN125_003612"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase AroF"
                     /protein_id="HAY8873238.1"
                     /translation="MQKDALNNVHITDEQVLMTPEQLKAAFPLSLQQEAQIADSRKTI
                     SDIIAGRDPRLLVVCGPCSIHDPETALEYARRFKALAAEVSDSLYLVMRVYFEKPRTT
                     VGWKGLINDPHMDGSFDVEAGLQIARKLLLELVNMGLPLATEALDPNSPQYLGDLFSW
                     SAIGARTTESQTHREMASGLSMPVGFKNGTDGSLATAINAMRAAAQPHRFVGINQAGQ
                     VALLQTQGNPDGHVILRGGKAPNYSPADVAQCEKEMEQAGLRPSLMVDCSHGNSNKDY
                     RRQPAVAESVVAQIKDGNRSIIGLMIESNIHEGNQSSEQPRSEMKYGVSVTDACISWE
                     MTDALLREIHQDLNGQLTARVA"
     gene            4449..4814
                     /locus_tag="JN125_003613"
     CDS             4449..4814
                     /locus_tag="JN125_003613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417093.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2799 domain-containing protein"
                     /protein_id="HAY8873239.1"
                     /translation="MMKKFIAPLLALLVSGCQIDPYTHAPTLTSTDWYDVGMEDAISG
                     SAIKDDDAFGDSQADRGLYLKGYAEGQKKTCQTDFTYARGLSGKSFPASCNNVESASQ
                     LHEVWQKGADENASTIRLN"
     gene            4964..5482
                     /locus_tag="JN125_003614"
     CDS             4964..5482
                     /locus_tag="JN125_003614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4154 domain-containing protein"
                     /protein_id="HAY8873240.1"
                     /translation="MRFSHRLFLLLILLLTGAPILAQEPSDVAKNVRMMVSGIVSYTR
                     WPALSGPPKLCIFSSSRFSTALQENAATSLPYLPVIIHTQQEAMISGCNGFYFGNESP
                     TFQMELTEQYPSKALLLIAEQNTECIIGSAFCLIIHNNDVRFAVNLDALSRSGVKVNP
                     DVLMLARKKNDG"
     gene            5472..>6275
                     /gene="dgcN"
                     /locus_tag="JN125_003615"
     CDS             5472..>6275
                     /gene="dgcN"
                     /locus_tag="JN125_003615"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase DgcN"
                     /protein_id="HAY8873241.1"
                     /translation="MMDNDNSLNKRPTFKRALRNISMTSIFITMMLIWLLLSVTSVLT
                     LKQYAQKNLALTAATMTYSLEAAVVFADGPAATETLAALGQQGQFSTAEVRDKQQNIL
                     ASWHYTRKDPGDTFSNFISHWLFPAPIIQPIRHNGETIGEVRLTARDSSISHFIWFSL
                     AVLTGCILLASGIAITLTRHLHNGLVEALKNITDVVHDVRSNRNFSRRVSEERIAEFH
                     RFALDFNSLLDEMEEWQLRLQAKNTQLLRTALHDPLTGLANRAAFRSGIN"
BASE COUNT         1703 a         1603 c         1412 g         1557 t
ORIGIN      
        1 ccttgagctg ccgttttttt attctgttag ttgtgaaact gaagcgattt agtcactatc
       61 gatctcatca aatatggctc gctttgagat attcctcaag taaaaaaaca cctcttcctg
      121 cgatttctca caaaaaagat tcgttgacaa aaagtgacaa aattatgaga ttcccatcac
      181 acattttgac atcaggaacg gtatgctgaa ttcaccaaga cgggaagaca agaggtaaaa
      241 tttatgacaa tgaacattac cagcaaacaa atggaaatta ctccggccat ccgccaacat
      301 gtcgcagacc gtctcgccaa actggaaaaa tggcaaacac atctgattaa tccacatatc
      361 attctgtcca aagagccaca agggtttgtt gctgacgcca caatcaatac acctaacggc
      421 gttctggttg ccagtggtaa acatgaagat atgtacactg caattaacga attgatcaac
      481 aagctggaac ggcagctcaa taaactgcag cacaaaggcg aagcacgtcg tgccgcaaca
      541 tcggtgaaag acgccaactt cgtcgaagaa gttgaagaag agtagtcctt tatattgagt
      601 gtatcgccaa cgcgccttcg ggcgcgtttt ttgttgacag cgtgaaaaca gtacgggtac
      661 tgtactaaag tcacttaagg aaacaaacat gaaacacaca ccgtttttct tcgcattctt
      721 ttttaccttc ccctgaatgg gaggcgtttc gtcgtgtgaa acagaatgcg aagacgaaca
      781 ataaggcctc ccaaaccggg gggccttttt tattgataac aaaaaaggca acactatgac
      841 atcggaaaat ccattactgg cgctgcgaga gaaaatcagc gcgctggatg aaaaattatt
      901 agcattactg gcagagcggc gcgaactggc cgtcgaggtg ggaaaagcca aactgctctc
      961 gcatcgcccg gtacgagata ttgatcgtga acgcgattta ctggaaagat taattacgct
     1021 cggtaaagcg caccatctgg acgcccatta cattactcgc ctgttccagc tcatcattga
     1081 agattccgta ttaactcagc aggctttgct ccagcaacat ctcaataaaa ttaatccgca
     1141 ctcagcacgc atcgcttttc tcggccccaa aggttcttat tcccatcttg cggcgcgcca
     1201 gtatgctgcc cgtcactttg agcaattcat tgaaagtggc tgcgccaaat ttgccgatat
     1261 ttttaatcag gtggaaaccg gccaggccga ctatgccgtc gtaccgattg aaaataccag
     1321 ctccggtgcc ataaacgacg tttacgatct gctgcaacat accagcttgt cgattgttgg
     1381 cgagatgacg ttaactatcg accattgttt gttggtctcc ggcacgactg atttatccac
     1441 cattaatacg gtctacagcc atccgcagcc attccagcaa tgcagcaaat tccttaatcg
     1501 ttatcctcac tggaagattg aatataccga aagtacgtct gcggcaatgg aaaaggttgc
     1561 acaggcaaaa tcaccgcatg ttgctgcgtt gggaagcgaa gctggcggca ctttgtacgg
     1621 tttgcaggta ctggagcgta ttgaagcgaa tcagcaacaa aacttcaccc gatttgtggt
     1681 gttggcacgt aaagccatta acgtgtctga ccaggttccg gcgaaaacga cgttgttaat
     1741 ggcgaccggg caacaagccg gtgcgctggt tgaagcgttg ctggtgctgc gcaaccacaa
     1801 tctgattatg acccgtctgg aatcacgccc gattcacggt aatccatggg aagagatgtt
     1861 ttatctggat attcaggcca atcttgaatc agcggaaatg caaaaagcat tgaaagagtt
     1921 aggggaaatt acccgttcaa tgaaggtatt gggctgttac ccaagtgaga acgtagtgcc
     1981 tgttgatcca acctgatgaa aaggtgccgg atgatgtgaa tcatccggca ctggattatt
     2041 actggcggtt gtcattcgcc tgacgcaata acacgcggct ttcactctga aaacgctgtg
     2101 cgtaatcgcc gaaccagtgc tccaccttgc ggaaactgtc aataaacgcc tgcttatcgc
     2161 cctgctccag caactcaatc gcctcgccga aacgcttata gtaacgtttg attaacgcca
     2221 gattacgctc tgacgacata ataatgtcgg cataaagctg cggatcctga gcaaacagtc
     2281 gcccgaccat cgccagctca aggcggtaaa tcggcgaaga gagcgccaga agttgctcaa
     2341 gctgaacatt ttcttctgcc agatgcagcc cataagcaaa agtagcaaag tggcgcagag
     2401 cctgaataaa cgccatattc tgatcgtgct cgacagcgct aatacgatgc agccgagcgc
     2461 cccagacctg aatttgctcc agaaaccatt ggtatgcttc cggcttacgt ccatcacacc
     2521 agaccacaac ttgctttgcc aggctaccgc tgtccgggcc gaacatcggg tgtaacccca
     2581 ataccgggcc atcgtgcgcc gccagcatgg cctgtaatgg tccatttttc actgatgcca
     2641 gatcaaccag aatacaatct ttcggtaaag gcggtaattt gccgataact tgctcagtaa
     2701 cgtggattgg cacactaaca atcaccattc cggcatcggc aacaatatca gccgctcgat
     2761 cccagtcatg ttgctccaga atccgcacct gataacccga gagtgtcagc atcttctcga
     2821 acaggcgtcc catctgaccg ccaccgccga cgataaccac cggacgcagt gacggacaaa
     2881 gtgttttaaa tcctttgtcg ttttcactgg agtaagattc acgcatcacc cgacgcaaaa
     2941 catcctcaat cagatctggc ggtacaccca gagcttccgc ctctgcacga cgcgaggcca
     3001 acatagatgc ctcgcgctcc ggaacataaa taggcagtcc aaagcggctt ttcacctcgc
     3061 ccacttcagc aaccagttcc agacgcttcg ctaataaatt cagcagcgct ttatcgactt
     3121 catcaatttg atcgcgtaat gcggtcaatt cagcaaccat aataaacctc ttaagccacg
     3181 cgagccgtca gctgcccgtt cagatcctga tgaatttcac gcagcaaggc atcggtcatt
     3241 tcccagctaa tgcaggcatc ggttacggat acaccgtatt tcatttcact gcgcggttgc
     3301 tcagaagact gattgccctc gtggatatta ctttcgatca tcagaccaat aattgagcga
     3361 ttgccatctt tgatttgagc aaccacggat tctgccaccg caggctgacg gcgataatct
     3421 ttattggaat taccgtggct gcaatctacc atcagagacg ggcgcagtcc cgcctgttcc
     3481 atctcttttt cacattgcgc aacatccgca gggctatagt tcggcgcttt accaccgcgc
     3541 aggatgacat gcccgtccgg attcccctga gtttgtagca acgcaacctg ccctgcctgg
     3601 ttaatgccaa caaaacggtg cggctgggcg gcggcgcgca tagcgttaat tgctgttgcc
     3661 agactgccgt cggtgccgtt tttaaaacca accggcatgg aaagcccgga ggccatttca
     3721 cggtgagttt gcgattccgt tgtacgagca ccaattgctg accagctaaa cagatcgccc
     3781 aggtattgcg ggctattcgg atctaacgct tccgtcgcca gtggcagtcc catattcacc
     3841 agctcaagca gcaatttacg cgcgatctgc agcccggctt ctacatcaaa agagccatcc
     3901 atatggggat cgttaattaa ccctttccag ccgacagtgg tacggggttt ttcaaaatag
     3961 acgcgcatta ccagatagag gctatcgctg acctctgcgg caagggcttt aaatcgacga
     4021 gcatattcca gagcagtttc cggatcatga atggaacaag gaccacaaac taccagcaga
     4081 cgaggatcgc gcccggcgat aatatctgaa atggttttac gcgagtcagc aatctgggct
     4141 tcttgttgca ggctcaatgg aaaagcggcc ttcagttgtt ccggagtcat taaaacctgt
     4201 tcgtcggtaa tatgtacgtt attcagcgcg tctttttgca tgatggcgat cctgtttatg
     4261 ctcgtttgcg atagttgatc ctcagcgagg atgacgtaac gataacacac aaagtaaagt
     4321 tttcaatcca tatttcgtac gcttttcttt acacgaacaa tttactcgcg ctttgatgct
     4381 tatttcgtac aaataaattt acacctcctt taaaaacaat ccgctatgct ttgaaaaagg
     4441 agaaagaaat gatgaaaaag tttatcgccc ccttattggc tttactggtt agcggatgtc
     4501 agattgatcc ttatactcac gcgccaacct tgaccagcac cgactggtat gatgtcggta
     4561 tggaagatgc gatatcgggc agcgccataa aagatgacga tgcatttggc gattcacagg
     4621 cggatcgcgg tctatacctt aaaggatatg ccgaaggaca aaagaaaact tgccagaccg
     4681 attttactta tgcccgggga ctttccggta aaagctttcc tgccagctgt aacaatgttg
     4741 aaagtgccag ccaactgcat gaagtatggc aaaaaggggc tgatgaaaat gccagcacaa
     4801 tacgattaaa ttaattaaaa ccccacaaat aaattaaaca taagatttta ctcattgtgt
     4861 tttatttctc acattgatga cgatcgcatg aaaaaatgat attttaatga gcattctgaa
     4921 aaaatatcga tgcatttcga gcgaagaagg tggggatccc tgaatgcgtt tttctcaccg
     4981 actgttctta cttctgattc tcctgctgac gggagcacca atactcgctc aggagccttc
     5041 tgacgttgcg aaaaacgtgc gtatgatggt ttccggtatt gtcagttaca cccgctggcc
     5101 tgcgctatca gggccaccaa agttatgtat cttttcatct tcacgtttta gtaccgccct
     5161 acaagagaat gccgcgacat ctttgcctta tctgcctgtc atcattcaca ctcaacaaga
     5221 ggcgatgatt tcaggctgca atggttttta ttttggcaac gagtcaccga cattccagat
     5281 ggaattaacc gaacaatatc cgtcaaaggc gttattatta attgccgaac aaaataccga
     5341 gtgcattatt ggtagcgcct tttgtctgat catccacaat aatgacgtca gatttgccgt
     5401 aaacctggat gccttatcgc gtagcggtgt aaaggtcaac ccggatgtct taatgctcgc
     5461 acggaagaaa aatgatggat aacgataatt ctcttaataa gcgccccacg tttaaaagag
     5521 cattacgcaa catcagtatg accagcatat ttatcactat gatgctgatc tggttgctgc
     5581 tttccgtgac ctcggtgctg accctgaaac agtacgcgca aaaaaacctg gcactgacag
     5641 cagcaacaat gacttacagt ctggaagcag ctgtcgtttt tgccgatggc cctgcagcaa
     5701 ctgaaacact ggcagcgctg ggccagcaag ggcaattttc aactgcagaa gtacgtgata
     5761 agcagcaaaa tattctggcg tcctggcatt acacccgtaa ggatccaggc gatactttca
     5821 gcaatttcat aagccactgg ctcttccccg cccccatcat tcagccgatt cgtcacaatg
     5881 gtgaaaccat tggcgaagta cgcttaaccg ctcgcgacag ttcaatcagc cattttatct
     5941 ggttttcgct cgccgtactg accggttgta ttctgctggc atcaggcatc gcaattaccc
     6001 tcacccgcca tttgcacaat ggcctggtgg aagcgctgaa aaatatcacc gatgtcgtac
     6061 atgatgtgcg ttccaaccgc aatttttccc gacgagtttc tgaagaacgt atcgctgagt
     6121 ttcaccgctt cgctctcgac ttcaacagtc tgctggatga aatggaagag tggcagcttc
     6181 gtttacaggc caaaaatacg cagcttctgc gtaccgcgct acatgaccca ttaaccgggc
     6241 tggctaaccg cgcagcgttt cgtagcggca tcaat
//
LOCUS       DADMHM010000212         6200 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.216, whole genome shotgun sequence.
ACCESSION   DADMHM010000212 DADMHM010000000
VERSION     DADMHM010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6200)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6200)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6200
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.216"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(85..900)
                     /gene="sul2"
                     /locus_tag="JN125_003616"
     CDS             complement(85..900)
                     /gene="sul2"
                     /locus_tag="JN125_003616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001043260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfonamide-resistant dihydropteroate synthase
                     Sul2"
                     /protein_id="HAY8873242.1"
                     /translation="MNKSLIIFGIVNITSDSFSDGGRYLAPDAAIAQARKLMAEGADV
                     IDLGPASSNPDAAPVSSDTEIARIAPVLDALKADGIPVSLDSYQPATQAYALSRGVAY
                     LNDIRGFPDAAFYPQLAKSSAKLVVMHSVQDGQADRREAPAGDIMDHIAAFFDARIAA
                     LTGAGIKRNRLVLDPGMGFFLGAAPETSLSVLARFDELRLRFDLPVLLSVSRKSFLRA
                     LTGRGPGDVGAATLAAELAAAAGGADFIRTHEPRPLRDGLAVLAALKETARIR"
     gene            complement(1560..1964)
                     /locus_tag="JN125_003617"
     CDS             complement(1560..1964)
                     /locus_tag="JN125_003617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012579059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid replication initiation protein"
                     /protein_id="HAY8873243.1"
                     /translation="MLHVAGEKRQHRRVSRICDTGDIPLPRSLTRYARSFGCGERYRL
                     TDGDGNFLEDTRKTLSKEEIRPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRR
                     FPLVAPSCALLFLPFGLPVSFRCYGRGFSFHA"
     gene            complement(2983..3471)
                     /locus_tag="JN125_003618"
     CDS             complement(2983..3471)
                     /locus_tag="JN125_003618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011161230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="entry exclusion protein 1"
                     /protein_id="HAY8873244.1"
                     /translation="MFCCYNTVHTGDTVTFMAWHTVQETLKLTGKSRSQLYRDMAKGL
                     VSYRTGKNDRREFETSELIRAYGELRTSETPKRHKEGHSKSVVSQAENAQLDVIQQKL
                     DALQQTVTLMLEDKMAREAENRLRNEEREQLQAEISRLADALAQEKKRGFWSRLFRSG
                     SE"
     gene            3641..4030
                     /locus_tag="JN125_003619"
     CDS             3641..4030
                     /locus_tag="JN125_003619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000102614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873245.1"
                     /translation="MSTELNSGTVGGFGHMGPNDPYNDGHSGSGSSGGSFNGGGNGGH
                     DNSSGSSYTASFGLITGRHPITVPGTKNINSVDLSAVINNIIHHEGARNNMYLDTANN
                     VRVGVTGTGWQCLATAGISAEGKRTFR"
     gene            4074..4613
                     /locus_tag="JN125_003620"
     CDS             4074..4613
                     /locus_tag="JN125_003620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001120888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
                     /protein_id="HAY8873246.1"
                     /translation="MPHVAARTASRDRDTGRYQSHRPEQTLLYQIVDEYYPAFAALMA
                     EQGKELPGYVQREFEEFLQCGRLEHGFLRVRCESCHAEHLVAFSCKRRGFCPSCGARR
                     MAESAALLVDEVLPEQPMRQWVLSFPFQLRFLFGVVCGKGRNPTLRLWPAIFSGEIDV
                     FPGDRRSRLISSMTSVAPA"
     gene            complement(4585..5421)
                     /locus_tag="JN125_003621"
     CDS             complement(4585..5421)
                     /locus_tag="JN125_003621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000480972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(6)-Id"
                     /protein_id="HAY8873247.1"
                     /translation="MFMPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKGLK
                     PIEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEYAGERMLSHIVAEHGDYQATE
                     IAAELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMM
                     SNASELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDP
                     RRIAQMADAFSRALDVDPRRLLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQT
                     SY"
     gene            complement(5421..>6200)
                     /locus_tag="JN125_003622"
                     /note="aph(3'')-Ib"
     CDS             complement(5421..>6200)
                     /locus_tag="JN125_003622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010890156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(3'')-Ib"
                     /protein_id="HAY8873248.1"
                     /translation="GESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASRRGELAGER
                     DRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAWPSMGQQLG
                     AVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLLARVERELP
                     VRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLALMIANAEE
                     NWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG"
BASE COUNT         1432 a         1617 c         1642 g         1509 t
ORIGIN      
        1 aaaaaaaata ttagttcgat tcaatggagg ttccttcagt tttctgatga agcgcgaata
       61 tagagaaata tcccgaatgt gcagttaacg aattcttgcg gtttctttca gcgccgccaa
      121 taccgccagc ccgtcgcgca aggggcgcgg ctcgtgtgtg cggatgaagt cagctccacc
      181 tgcggcggcg gcaagctctg cagcgagtgt cgcggccccg acatcccccg gaccacggcc
      241 tgtgagcgcg cgcagaaagg atttgcgcga aacagacaga agcaccggca aatcgaagcg
      301 cagccgcaat tcatcgaacc gcgccagcac cgagagcgag gtttcgggag cagcccccag
      361 aaaaaacccc atgccgggat caaggacaag gcggttgcgt ttgataccgg cacccgtcag
      421 cgccgcgatg cgcgcgtcaa agaacgccgc aatgtgatcc atgatgtcgc cagcgggtgc
      481 ctcgcgccga tctgcctgcc cgtcttgcac cgaatgcata acgacgagtt tggcagatga
      541 tttcgccaat tgcggataga acgcagcgtc tggaaaaccg cgaatatcat tgagataggc
      601 cacaccacgc gacaaggcat aggcttgcgt cgcgggttga taactgtcga gcgagacggg
      661 aatgccatct gccttgagcg cgtccagcac cggcgcgata cgcgcgattt ctgtgtcgga
      721 cgaaacaggc gcggcgtcgg gattgctgga tgccggaccg aggtcgatca catctgcccc
      781 ctcggccatc agcttacgcg cctgcgcaat ggctgcgtct ggcgccagat accggcctcc
      841 atcggagaaa ctgtccgagg ttatgttgac gatgccgaaa atgatgagcg atttattcat
      901 gggggcttct ataataataa taatcgagca tgagtctcat acggatgctc gggtcgaaag
      961 ggaatcccca ggcgagtaac ctgtttgcgg tgatccgttt catgatgatg tatctgtagc
     1021 attttggaaa taaatatatc atctctcaat aagtagatat atttatcttt tttgcttctt
     1081 tggtgctgca agtcaccaat acgagggaaa cctgttacgg agcggtttaa ccgtaatcaa
     1141 cagtgactgg tgtcatgttc ggaagattaa ttgatagtaa tctacaaagg atcttcttga
     1201 gatccttttc aatgaatcgt aatctcttgc tctgtaaacg aaaaaaccgc ctggggaggc
     1261 ggtttgttcg aaggttaagt cagttgggga actgcttaac ccggtaacag ggttcacgag
     1321 accgccatta ccaaaactgt tctttcagtg tagccgcagt caggcctcta cttcaagacc
     1381 tcttaatcta tcttctcgtg cactcctgtt actaatggct gctgccagtg gcgttttgtc
     1441 gtgtctttcc gggttggact caagttgata gttaccggac aaggcgcagc ggtcggactg
     1501 aacggggggt tcgtgcatac agtccagctt ggagcgaact gccttcacgg aactgagtgt
     1561 caggcgtgga atgagaaacc gcggccataa cagcggaatg acaccggtaa accgaaaggc
     1621 aggaacagga gagcgcacga gggagctacc agggggaaac gcctgggatc tttatagtcc
     1681 tgtcgggttt cgccaccact gatttgagcg tcagattttg cgatgcttgt caggggggcg
     1741 gagcctatgg aaaaacggct tcgccgtggc cttatctctt ctttgctaag tgtcttcctg
     1801 gtatcttcca ggaaatttcc gtccccgtcc gtaagccggt accgctcgcc gcagccgaac
     1861 gaccgagcgt agcgagtcag tgagcgagga agcggaatat ctcctgtatc gcatattctg
     1921 ctgacgcgcc ggtgctgcct tttttctcct gccacatgaa gcacttcact gattttcgca
     1981 atcgtggcaa catagtaagc cagtatacac tccgctagcg ctacatgact ggttcagggc
     2041 tgcgccccga aacccgctaa caacctctca gctactggat atcaccccat gccatctgaa
     2101 tatgatgaac aactggattc gactgatacg cagcttcccg gcgaatatga cctttttgat
     2161 ttaatggcgc aggttactga agagaacctg catgcccctg tggattttgg gtcgcctgtc
     2221 ggccgggaag cgttatagct ttttcgcttg cccgcgtacg tggtaatact ccggtattac
     2281 cttttatttc tttattttca tgtaattaca gtggattttt aatacccggg tattactcgt
     2341 gaaaacgaaa tattcctttt ttttctttta attcatgcag ttgcgatgaa aatcgcggct
     2401 gcgttaggtg tatgaccatt ttgaggttga aaaataatca accatggcgg gtgatttacg
     2461 caggttaagg ggagatcgtg acaaaaaaag cgttcctcac tgtatcgttc atgcctgcat
     2521 gaacgggtta ttcttcctga ctacagaatt acatcgctcc ttcagttcat acatcacttt
     2581 tacatcactt atacatcact tttacatcat tccttcagct catacgtcac tttcatcctc
     2641 tgtgccattt gtacatcacc cccttcctga acgtgctgac agcgggtttt ccggctgcgc
     2701 cggcaacgct tcacggccac gcaataaatt gcgtccccgt tcaccgtttt cggatgggaa
     2761 gaacgccgga aacaggactt accccggctg aatggtgtga atttccgcgc tatgcacttg
     2821 tgcgcatact catgcatgcc gtaaaaacag agcctgcgcg tttctggcgg gttttcgggt
     2881 ggtttgttgc ctgttttacc ggtttcccgt cagaaacgcc ctgagggcct ctcaggcggt
     2941 gctgataaca gatgttatgg taaatcagag tcacctgcac tgttactctg aaccggagcg
     3001 aaacagccgc gaccagaatc cccgcttttt ttcctgtgcc agcgcgtcag ccagacggct
     3061 aatttcggcc tgtagttgtt ccctctcctc atttcgcagg cggttttctg cttcccgcgc
     3121 catcttgtct tcaagcatta gggtaacagt ctgctgcaga gcgtccagtt tctgctgaat
     3181 gacgtctagc tgagcatttt ccgcctggct aacgacagat ttggagtgtc cctccttgtg
     3241 cctttttggt gtctcagaag tgcgcagctc gccataggcc cgaatcagtt cactggtctc
     3301 gaactcccgg cgatcatttt ttcctgtgcg atagctgaca aggcctttag ccatgtcacg
     3361 atataattgc gagcgcgact ttcctgttaa tttcagtgtc tcttgaactg tgtgccatgc
     3421 cataaaagtg acagtgtctc ctgtgtgtac cgtattgtaa cagcagaaca tattactgtt
     3481 ttaacacaaa aggtctgagg ctgcccgtga ggcgtgaaaa atacacaaaa aacctgttga
     3541 cggtgtggtt ttgacgggcg tagtatttcg aatactgtat ataaacacat tgttataaat
     3601 acagtttttg ctgtttttaa aagtcaaaga ggataatttt atgagtacag agttaaatag
     3661 cggtactgtc ggtggttttg gtcacatggg accaaatgac ccctacaatg atggtcatag
     3721 cggctctgga agttcgggag gtagttttaa cggtggtggt aatggtggcc atgataatag
     3781 tagtggttca tcttatactg catcctttgg tctcatcact ggccgacacc cgataactgt
     3841 cccaggtacg aagaatatta attctgtcga tctttctgct gtcattaata acattataca
     3901 tcatgaaggt gcacgcaata acatgtacct agatactgcg aacaatgtaa gagtgggagt
     3961 gacgggcact ggctggcaat gtctagcaac ggcaggcatt tcggctgagg gtaaaagaac
     4021 tttccgctaa gcgatagact gtatgtaaac acagtattgc aaggacgcgg aacatgcctc
     4081 atgtggcggc caggacggcc agccgggatc gggatactgg tcgttaccag agccaccgac
     4141 ccgagcaaac ccttctctat cagatcgttg acgagtatta cccggcattc gctgcgctta
     4201 tggcagagca gggaaaggaa ttgccgggct atgtgcaacg ggaatttgaa gaatttctcc
     4261 aatgcgggcg gctggagcat ggctttctac gggttcgctg cgagtcttgc cacgccgagc
     4321 acctggtcgc tttcagctgt aagcgtcgcg gtttctgccc gagctgtggg gcgcggcgga
     4381 tggccgaaag tgccgccttg ctggttgatg aagtactgcc tgaacaaccc atgcgtcagt
     4441 gggtgttgag cttcccgttt cagctgcgtt tcctgtttgg ggtcgtttgc gggaaggggc
     4501 ggaatcctac gctaaggctt tggccagcga tattctccgg tgagattgat gtgttcccag
     4561 gggataggag aagtcgcttg atatctagta tgacgtctgt cgcacctgct tgatcgcggc
     4621 cgcgatagct agatcgcgtt gctcctcttc tccatccgcg ttccaagctg cggaaaggca
     4681 cccataagcg tacgcctggt cgagcaggcg acgcggatcg acgtccagcg cacgagagaa
     4741 tgcgtccgcc atctgtgcaa tgcgtctagg atcgagacaa aggtcgtctc tgtcagccgg
     4801 atcgtagaac atattggcgg cgccaaagcc cacttcaccg accagaccga cgggatctat
     4861 caccagccag ccgcgactgg agaacatgat gttttcatga tgcagatcgc catgtagccc
     4921 acgcagttcc gaggcattgc tcatcatttg atcggctata atcgccgcgt ggacgtagtc
     4981 agtttgacaa cctgcgtttt gatcatcgcg cgcccgctga aacaaagctg caaagcgatc
     5041 ccggatcggg agaagggcag aaggcagggg ttcctcagat gcggcataca gcttcgccat
     5101 tagttccgct gcaatttcgg tcgcctggta gtcgccgtgc tcggcaacga tgtgagagag
     5161 cattcgctcc ccggcatatt cgagcaacat cagattgttc tcacgaccga gcaaccggac
     5221 tgctcccctc ccattgcgcc ataccagata gtcggccccg cgcagttcat cagcaatgtc
     5281 ttctataggt ttcaatccct tgacgattgc aggagtcccg tctggcaatg aaactttcca
     5341 aacgaggctg gaaaaggtgt ccgcaatgag aacaggttgc gaaacgtgcc aatgagcagg
     5401 aaaaacaggc ggcatgaaca tcaaccccaa gtcagagggt ccaatcgcag atagaaggca
     5461 aggcgttcgc ggtcgggggc ttcgatcccc aatacattga ataggacagc gaaggcgcgc
     5521 tctgcttcat ctggcgctgc ccagttctct tcggcgttag caatcatgag tgccaaatcg
     5581 gcatagcgat ctgctgttcc gagccgccca aggtcgatca gacccgtgca ttgaagagtt
     5641 ttagggtcca ccatgaagtt cggcatgcag ggatcaccat ggcaaacaac catatcggtg
     5701 cgctcttggt cgagccgcac cggtagctct cgttcgacac gagccaaaag atcgagctgc
     5761 ggcgtactct tgtcctcgtc cggtaagaag tcgggattga cggcattgcg ggacaccaca
     5821 tcaacggcgc gtccgaacat tcgcgacagc ctgcgctcaa acggacattg atcaaccgat
     5881 aggctgtgaa cagcgccaag ttgctgcccc attgacggcc acgctttgag caaatccgct
     5941 ccagacagat cagccgccgg tactcccgga attgccgtta tcaccaagca tgcaccctcc
     6001 tgttcctcct gccagttgat gacctcgggg caagccacac ctcgaccttt gagccaaatg
     6061 aggcggtcac gctctccagc gagctcaccg cggcgggaag caggtgcgat tttcgcgaag
     6121 gcatgcccgt caccacgtcg aaaaacaaaa tcaccagatt ctccgcctct gacaggcaac
     6181 cagtcagaat gcgattcacc
//
LOCUS       DADMHM010000213         6070 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.217, whole genome shotgun sequence.
ACCESSION   DADMHM010000213 DADMHM010000000
VERSION     DADMHM010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6070)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6070)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6070
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.217"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..620)
                     /locus_tag="JN125_003623"
     CDS             complement(<1..620)
                     /locus_tag="JN125_003623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus periplasmic chaperone"
                     /protein_id="HAY8873249.1"
                     /translation="MKGLLSLLISSMIFPVHAGMVIFGTRIIYPAEQKEVMVKLMNQG
                     NRSSLMQAWIDDGDTSLPPEKIQVPFMLTPPVVKVAANSGQQIKIKIMPNKLPSNKES
                     IFYLNVLDIPPNSPEQEGKNALKFAMQNRIKLFYRPAGIAPVNKATFKKLLINRSGNG
                     LVIKNDSANWVTISDVKANNVKVNYETIMIAPLESQSVNVKSNNAN"
     gene            complement(708..1250)
                     /locus_tag="JN125_003624"
     CDS             complement(708..1250)
                     /locus_tag="JN125_003624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HAY8873250.1"
                     /translation="MKHSIIVVAVLSSVFMSAGIFAAEVDTGTLTIKGNIAESPCTFV
                     AGGDSVSINMPTVPTTVFDGKAKYSTYDGVVGVTSSMLKITCPKTIDGVKLSLITNEK
                     ILGNDKAISSSNDTVGYYLYLGDSSDVLDISAPFNIESYKTADGQYAIPFKAKYLKLI
                     DSGVASGTVNSSLVMRVAQD"
     gene            complement(1549..1830)
                     /locus_tag="JN125_003625"
     CDS             complement(1549..1830)
                     /locus_tag="JN125_003625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2574 family protein"
                     /protein_id="HAY8873251.1"
                     /translation="MNKYWLSGIIFLAYGLASPAFSSETATLTINGRISSPTCSMDVV
                     NNHLQQRCGQLLQRVETNYRASSTAKGVTTEVVTVGNNDKRKIVLNRYD"
     gene            complement(2093..3202)
                     /gene="apbC"
                     /locus_tag="JN125_003626"
     CDS             complement(2093..3202)
                     /gene="apbC"
                     /locus_tag="JN125_003626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310946.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster carrier protein ApbC"
                     /protein_id="HAY8873252.1"
                     /translation="MNEQSQAKSPEALRAMVAGTLANFQHPTLKHNLTTLKALHHVAW
                     MDDTLHVELVMPFVWHSAFEELKEQCSAELLRITGAKAIDWKLSHNIATLKRVKNQPG
                     INGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQ
                     RPTSPDGTHMAPIMSHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDY
                     LVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVE
                     NMSVHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLREDLDKGTPTVISRP
                     ESEFTAIYRQLADRVAAQLYWQGEVIPGEISFRAV"
     gene            3334..5367
                     /gene="metG"
                     /locus_tag="JN125_003627"
     CDS             3334..5367
                     /gene="metG"
                     /locus_tag="JN125_003627"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HAY8873253.1"
                     /translation="MTQVAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGH
                     EVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEE
                     NRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCE
                     VCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANK
                     MQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSV
                     SFDEYWKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNFRKPTNLFVHGYVTVNGAKM
                     SKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVN
                     LASRNAGFINKRFDGVLASELADPQLYRTFTDAAEVIGEAWESREFGKAVREIMALAD
                     LANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLN
                     TELTWDGIQQPLLGHKVNPFKALYNRIDMKQVEALVEASKEEVKAAAAPVTGPLADDP
                     IQETITFDDFAKVDLRVALIENAEFVEGSDKLLRLTLDLGGEKRNVFSGIRSAYPDPQ
                     ALIGRHTIMVANLAPRKMRFGISEGMVMAAGPGGKDIFLLSPDAGAKPGHQVK"
     gene            5508..>6070
                     /locus_tag="JN125_003628"
     CDS             5508..>6070
                     /locus_tag="JN125_003628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001215584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WGR domain-containing protein"
                     /protein_id="HAY8873254.1"
                     /translation="MRHFIYQDEKSHKFWAVEQQGNELHINWGKVGTNGQSQIKSFAD
                     AAAAAKAELKLIAEKTKKGYVENASANVHIPPITKATPEVETSPESKNQRPWLADDAV
                     IRLTDDINRFAFPHRSRPREINYLHKDGQIWQLIANNTRAYDPANNYRSYPENWQQAF
                     AELQMRVQGNQQTGSAQSDAALLWSFW"
BASE COUNT         1651 a         1446 c         1378 g         1595 t
ORIGIN      
        1 ttgtttgcat tattactttt gacattaaca ctctgacttt ctaagggggc aatcataata
       61 gtttcataat tgactttgac attattagct ttgacatccg aaatcgtcac ccaattagct
      121 gagtcatttt ttatcaccaa tccattgcca ctgcgattta tcagtaactt tttaaaggtc
      181 gctttattca ccggagcaat acccgccggc cggtaaaaca atttgattct gttttgcatc
      241 gcaaacttca gtgcattctt accttcttgt tctggactat tcggtggaat atccagaaca
      301 ttaagataaa aaatactttc cttattactg ggtaatttat taggcatgat tttaattttt
      361 atttgttgcc cagaattggc cgctactttc actactggtg gcgttaacat gaaaggaacc
      421 tgaatctttt ctggcggcag agacgtgtcg ccatcatcaa tccacgcctg catcagcgaa
      481 gagcggtttc cctgattcat cagttttacc atgacctctt tctgctctgc cgggtaaatg
      541 atacgggtcc cgaaaataac cattccggca tgcacgggga atatcataga agagatgagt
      601 aaagataata accctttcat cttaatgcct cttatattta tgctggccgc catgaatatg
      661 gcggccattt taacttactg aaaaaacaag atgattattt taaatattta atcctgggca
      721 acacgcataa ccaatgaaga gttaacagta ccagatgcaa caccactgtc aatcaacttc
      781 agatattttg ccttaaacgg tattgcatat tgtccatcag cagttttata actttcaata
      841 ttaaatggtg cggaaatatc cagtacgtca ctgctatctc ccaaatagag atagtatcca
      901 actgtgtcat tactactgga tattgcctta tcattaccaa gaattttctc gttggtgatc
      961 aacgaaagtt ttacgccatc aatagtcttc ggacaagtaa ttttcagcat actgctggtt
     1021 acaccaacca cgccatcata agttgaatat ttcgctttac catcaaatac agtggtgggt
     1081 acagtcggca tattaatact gactgaatca ccgccagcga caaatgtaca tggtgattca
     1141 gcaatattac ctttaatggt taaagttccg gtatctactt cagcagcgaa aataccagca
     1201 ctcataaata cagaagataa gacagcgaca acaataattg aatgtttcat gatgcattcc
     1261 ttaataagtt tattttgttt tgttaagagt ctgtatctct tggaaacaaa tttctcacat
     1321 caaaaaagtt gccgcaatgt aaacatattg ttttgttgat ttaaaacaaa ttaactaatg
     1381 cgatataaat acaacaaata attcgctata acaaacattt ttgaaactga ttaattaccg
     1441 taaattaccg taaataacat tcatgaggtg aataaaaaag ccaaaatcat tcataggaat
     1501 gattttggct ttttaaatat gcttaatgct taaaacggtg ttggcaaatt aatcgtagcg
     1561 atttaacacg attttgcgtt tgtcgttatt acccacagtt accacttctg tcgtaacgcc
     1621 ttttgcagta gaagaagcac gatagttggt ttcaactcgt tgtaacaact gcccacaacg
     1681 ttgctgaaga tgattattaa caacatccat actgcatgta ggggaactaa ttctgccatt
     1741 gatggttaat gttgcagtct ctgaagagaa cgcgggagaa gccaatccat aggcaagaaa
     1801 aataattcct gacagccaat acttattcat tgaacgttat ccctgtagta aaggttatgc
     1861 ctggatagaa tgagtgcata acaaactata gctgtacatc cactacacag ccacgaagga
     1921 tgataatgaa gcattgcctg tacgatcaat cgactttgta gagtttcgga cgaaggtccg
     1981 cagaatattc gcagtattaa ataagtgttc attaatgcgg caaaaacaaa tacaccgcat
     2041 caatataaca tctctgcggt gtatgaagaa taaccagaat ggttaatagg cgttagaccg
     2101 cgcggaagga aatctcgcct ggaatgactt caccctgcca gtagagctga gctgcaacgc
     2161 ggtcagccag ctggcggtag atagcggtaa attcgctctc cgggcggctg ataaccgttg
     2221 gcgtgccttt atcgagatcc tcacgtaagg agatgtgtaa cggcatctgc cccagcagct
     2281 gtgtatggta tttttcagcc agtttctctg caccaccggt accgaaaatc ggttcatggt
     2341 gaccacagtt actgcaaata tgcacactca tgttctcgac aataccgagc accggaacct
     2401 cgactttctc gaacatcaca atgccttttt tcgcatcgat caacgcgatg tcctgcgggg
     2461 tggtgaccac gactgcacca gttactggaa tgttttgcgc cagcgtcaat tgaatgtcac
     2521 cggtgcctgg cggcatatca agcaccagat agtcgagatc cggccacaag gtttcctgca
     2581 gcatctgcat taacgccttg ctcgccatcg gtccacgcca caccatcgca ttgtcgtcag
     2641 tgaccagata accaattgaa ttggttgcca ggccatgaga cataatcggt gccatatggg
     2701 taccgtccgg cgaagttgga cgctgatttt ctgcgcccag catggtggga attgatgggc
     2761 cgtagatatc ggcgtccaga atgccgactt tcgccccttc cgccgccagt gccagcgcca
     2821 ggtttaccgc cgtggaggat ttacccacgc cgcctttacc ggaactgacc gcaatgatgt
     2881 tcttcacgcc attaataccc ggctgattct tcacgcgttt taaggtggcg atattgtgcg
     2941 acagtttcca gtcgatagct ttcgccccgg tgatacgcag cagttcggcg ctacattgct
     3001 cttttaactc ttcaaacgcg ctatgccaga cgaatggcat aaccagttcc acatgcaacg
     3061 tgtcgtccat ccaggcgaca tggtgcaacg ctttcagcgt ggtgaggtta tgcttcaggg
     3121 ttgggtgctg aaaattggcc agtgtcccgg cgaccattgc gcgcaaggct tctggtgatt
     3181 tggcctggga ttgttcgttc atcccgactc cttttttgta tagataaacc atcagctgat
     3241 agtttacctg aagaatatag agaagtactt acttaacatt ttcccatttg gtactatcta
     3301 accccttttc actattaaga agtaatgcct actatgactc aagtcgcgaa gaaaattctg
     3361 gtgacgtgcg cactgccgta cgctaacggc tcaatccacc tcggccatat gctggagcac
     3421 atccaggctg atgtctgggt ccgttaccag cgaatgcgcg gccacgaggt caacttcatc
     3481 tgcgccgacg atgcccacgg tacaccgatt atgctgaaag ctcagcagct tggtatcacc
     3541 cctgagcaga tgattggcga aatgagtcag gagcatcaga ctgatttcgc aggctttaac
     3601 atcagctatg acaactatca ctcgacgcac agcgaagaga accgccagtt gtcagaactt
     3661 atctactctc gcctgaaaga aaacggtttt attaaaaacc gcaccatctc tcagctgtac
     3721 gatccggaaa aaggcatgtt cctgccggac cgttttgtaa aaggcacctg cccgaaatgt
     3781 aaatccccgg atcaatacgg cgataactgc gaagtctgcg gcgcgaccta cagcccgact
     3841 gaattgatcg agccgaaatc ggtggtttct ggcgctacgc cggtaatgcg tgattctgaa
     3901 cacttcttct ttgatctgcc ctctttcagc gaaatgttgc aggcatggac ccgcagcggt
     3961 gcgttgcagg agcaggtggc aaataaaatg caggagtggt ttgaatctgg cctgcaacag
     4021 tgggatatct cccgcgacgc gccgtacttc ggttttgaaa ttccgaacgc gccgggtaaa
     4081 tatttctacg tctggctaga tgcaccgatt ggctatatgg gttctttcaa gaatctgtgc
     4141 gacaagcgcg gcgacagcgt aagcttcgat gaatactgga agaaagactc caccgccgag
     4201 ctgtaccact tcatcggtaa agatattgtt tacttccaca gtctgttctg gccagcaatg
     4261 ctggaaggca gcaacttccg caagccgacc aacctgtttg ttcatggcta tgtgacggtg
     4321 aacggcgcga agatgtctaa gtctcgcggt acctttatta aagccagcac ctggctgaat
     4381 cattttgacg ccgacagcct gcgttactac tacactgcga aactctcttc gcgcattgat
     4441 gatatcgatc tcaatctgga agatttcgtt cagcgcgtga atgccgatat cgtgaacaaa
     4501 gtggttaacc tggcctcccg caacgcgggc tttatcaaca agcgttttga cggcgtgctg
     4561 gcaagcgaac tggctgaccc gcagttgtac agaaccttca ctgatgccgc tgaagtgatt
     4621 ggtgaagcgt gggaaagccg cgaatttggt aaagcagtgc gcgaaatcat ggcgctggct
     4681 gatctggcta accgctatgt cgatgaacag gctccgtggg tggtagcgaa acaggaaggc
     4741 cgcgatgccg acctgcaggc aatttgctca atgggcataa acctgttccg cgtgctgatg
     4801 acttacctga agccggtact gccgaaactg accgagcgcg cagaagcatt ccttaatacg
     4861 gaactgacct gggatggtat ccagcaaccg ctgctgggcc ataaagtgaa tccgttcaag
     4921 gcgctgtata accgcataga tatgaagcag gttgaagcac tggtggaagc gtctaaagaa
     4981 gaagtgaaag cagctgccgc gccggtaact ggcccgctgg cagatgatcc gattcaggaa
     5041 accatcacct ttgacgactt cgccaaagtt gacctgcgcg tggcgctgat tgaaaacgca
     5101 gagtttgttg aaggttctga caaactgcta cgcctgactc tggatctcgg cggcgaaaag
     5161 cgtaatgtct tctccggcat tcgttctgct tacccggatc cgcaggcact gattggtcgt
     5221 cacaccatta tggtggctaa cctggcacca cgtaaaatgc gcttcggtat ctccgaaggc
     5281 atggtgatgg ctgccggtcc tggcgggaaa gatattttcc tgctaagccc ggatgctggt
     5341 gctaaaccgg gtcatcaggt gaaataatcc cccttcaagg cgctgcatcg acagcgcctt
     5401 ttctttataa attcctaaag ttgttttctt acgattttgt ctctctctaa cccgcataaa
     5461 tactggtagc atctgcattc aactggataa aattacaggg atgcagaatg agacacttta
     5521 tctatcagga cgaaaaatca cataaattct gggcggttga gcagcaggga aacgagctgc
     5581 atatcaactg gggcaaagtc ggcactaacg ggcaaagcca gataaaaagt tttgcggatg
     5641 ctgcggcagc ggcaaaagcg gagcttaagc tgatcgcaga gaaaacgaaa aaaggctatg
     5701 tggaaaatgc ttcagcaaac gtgcatatcc cccccattac caaagccact cctgaagttg
     5761 aaacttcccc tgagagtaaa aaccaacgcc cctggctggc tgatgatgcg gtcattcggc
     5821 taactgacga tattaatcga tttgcttttc ctcatcgctc tcgccccaga gagatcaatt
     5881 atctgcacaa agatggtcaa atatggcagc tcatcgcgaa taacaccagg gcatatgatc
     5941 ccgccaacaa ttaccgttct tatccagaaa actggcagca ggcttttgct gagttacaaa
     6001 tgcgagttca aggtaatcaa cagacaggga gtgcacaatc tgatgcagca ttgctctgga
     6061 gtttctggaa
//
LOCUS       DADMHM010000214         6031 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.218, whole genome shotgun sequence.
ACCESSION   DADMHM010000214 DADMHM010000000
VERSION     DADMHM010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6031)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6031)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6031
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.218"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(1..243)
                     /locus_tag="JN125_003629"
                     /pseudo
     CDS             complement(1..243)
                     /locus_tag="JN125_003629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000080172.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            195..1232
                     /locus_tag="JN125_003630"
     CDS             195..1232
                     /locus_tag="JN125_003630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001363149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraF"
                     /protein_id="HAY8873255.1"
                     /translation="MHRGFCVAHEPSILLPSVGAQLSNPDNITDNADRISDEWKAFDR
                     AIESNHGVPEAAARLKEHLRDFRNTHAAAQLGVSAVAALPGDRLSAALMVKSHGTVSV
                     DGKVSDADLTYLEEVANSTGQEVDKSRLTSQAFARAALITDVGIALATELETAGQKWS
                     LGFPPKFQRVDLFNYNVLVRNYDSSAFKGDRYHNTKNGINADIGASTDLDDNWTLGLV
                     AQNLIPRSIETKEVNGITETFRIRPQVTAGVSWHNAMFTTAFDVDLTPASGFTSDSNR
                     QFAAIGAEFNAWKWAQLRAGYRQNLAGNDGSAFTAGVGISPFDVVHLDVAGLIGTDNT
                     YGAVAQFQFTF"
     gene            1592..5449
                     /gene="sigA"
                     /locus_tag="JN125_003631"
     CDS             1592..5449
                     /gene="sigA"
                     /locus_tag="JN125_003631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease autotransporter toxin SigA"
                     /protein_id="HAY8873256.1"
                     /translation="MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSI
                     YGSYGETAFAAMLDINNIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVP
                     DFSAVSNKGATTSIGGAYSVTATHNGTQHHAIKTQSWDQTAYKASNRVSSGDFSVHRL
                     NKFVVETTGVTESADFSLSPEDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLF
                     GQNYNPDLLSASLFNLDWKNKSYIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHG
                     VTSTVGFISSTNIAWTNYSLFNNILVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVS
                     GGGELTLKQDTDLGIGGLIFDKNQTYKVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGD
                     NLHKIGSGTLDVKIAQGNNLKIGNGTVILSAEKAFNKIYMAGGKGTVKINAKDALSES
                     GNGEIYFTRNGGTLDLNGYDQSFQKIAATDAGTTVTNSNVKQSTLSLTNTDAYMYHGN
                     VSGNISINHIINTTQQHNNNANLIFDGSVDIKNDISVRNAQLTLQGHATEHAIFKEGN
                     NNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKSNNQIASFSQPDWESRKFNFRKLNL
                     ENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMFSGRNITGEGFGFRQQLRSGDSA
                     GESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLIINKGATVTAQGKMYVDKAIE
                     LAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQNYAWVNGNIKSDKKASILF
                     GVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASASMYNTLWRVNGQSALQS
                     LKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVNQSDKLIVKNQLTGR
                     NNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNISPVISTKEDQEH
                     TTWTLTGYKVAENTASSSAAKSYMSGNYKAFLTEVNNLNKRMGDLRDTNGEAGAWARI
                     MSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNAFSGKTKSV
                     GAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEAGYRYHV
                     TEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFSGKDW
                     KVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFGLE
                     FEKSAFGKYNVDNAINANFRYSF"
BASE COUNT         1836 a         1351 c         1348 g         1496 t
ORIGIN      
        1 acgacatttc ttcgataacg tgtgttcttt ctcctgcatc agcttataca gggaagtcag
       61 gagcggtcta ctctgcattt gcctgaccgc caggcgttca gacaccggta acccgcgtat
      121 atcgtgctct atggcgtaca gttcaccgat tagtttcaga gcttcttccg ccgtcgcgct
      181 tttagtactg atatatacat cgtggatttt gcgtcgcgca tgagcccagc atcctgcttc
      241 cgtccgtcgg cgcgcagctc tccaatccgg ataatatcac cgacaacgcc gaccggatca
      301 gtgatgagtg gaaggccttc gaccgcgcca tcgaaagtaa ccacggtgtt cctgaggctg
      361 ccgcacgcct gaaagaacac ctccgggact tccgtaacac acatgccgcc gcacagctgg
      421 gcgtttctgc tgtggcggcc cttcccggtg atcgcctctc tgccgcactg atggttaaat
      481 cacacggcac cgtcagtgtc gacggtaaag tctctgatgc tgacctcact tacctggaag
      541 aggtggcaaa cagcaccggg caggaggtgg acaaaagccg cctgacatca caggcctttg
      601 cccgcgcggc actgatcact gatgtgggta ttgctctggc tacggaactg gaaacggccg
      661 ggcagaaatg gtctctgggc ttccccccca aattccagcg cgtcgacctg ttcaactaca
      721 acgtgctggt cagaaattat gacagcagcg ccttcaaagg cgaccgctac cacaacacga
      781 aaaatggcat caacgccgac atcggtgcca gtacggacct ggatgacaac tggacgctgg
      841 gactggtcgc acagaacctg atcccccgta gtattgagac aaaagaagtg aacggtatca
      901 cggaaacctt caggatccgc ccgcaggtga cggccggtgt ctcctggcac aacgcgatgt
      961 tcaccaccgc atttgatgtg gatctgaccc cggccagcgg tttcacctcc gacagcaacc
     1021 gtcagtttgc cgccattggc gcagaattta atgcctggaa atgggcacag ctgcgcgccg
     1081 gttaccgtca gaatctggcc ggtaacgacg gcagtgcatt cacggccggg gtggggatct
     1141 caccgtttga tgtggttcac cttgatgttg caggcctgat cggcacggac aacacttacg
     1201 gtgcggtcgc acagttccag ttcaccttct gagttccacc tgcaaaacag catgcacatt
     1261 atcgctgcat gttgtttcca tcatcaaaag tctgtcggac atcgacagac ttaactcccc
     1321 cggataatac agaaaacctg taaaggattg accggaaaca acaaagatca aattttgatc
     1381 gcaaagttca aaatacaaac accaagtggt caatatctga ccaatcaatc acttgtgctt
     1441 atcttttttt tcattttgtt acatctgtca tacaaatata actgacagtg gttatcatta
     1501 taccttatca gttacgtacc atgactgata gttccccgtt gtaattaaat gctatcccat
     1561 aaccacaact cagaaatatc ggagttcacg tatgaataaa atttattcac tgaaatatag
     1621 tcatattaca ggtggattag ttgctgtttc tgaactgacc cggaaagtta gtgtcggtac
     1681 atcaagaaag aaagttatcc tcggtattat tttatcctca atatatggaa gttatggcga
     1741 aacagcattt gcagcaatgc tggatataaa taatatatgg acccgcgatt atcttgacct
     1801 tgctcaaaac agaggagagt tcagaccggg tgcaacaaat gttcaattaa tgatgaaaga
     1861 tggaaagata tttcattttc cagaactacc tgtacctgat ttttctgctg tttccaacaa
     1921 aggtgcaaca acatcaattg gaggtgcgta cagtgttact gcgactcata acggtacaca
     1981 gcatcatgca ataaaaacac agtcatggga tcagacagca tataaagcaa gtaacagagt
     2041 atcatctggc gacttttcgg ttcatcgtct gaataaattc gtcgtggaaa caacaggggt
     2101 tacggagagt gccgacttct cactttctcc cgaagatgcg atgaaaagat atggcgtaaa
     2161 ctacaacggt aaggaacaaa taattggctt cagagcaggt gccggaacaa cctcaacgat
     2221 attaaacggc aaacaatatc tgtttggaca aaactataat cccgacttgt taagcgcaag
     2281 tctttttaat ctggactgga aaaacaagag ttacatttat accaacagaa ccccttttaa
     2341 aaactcacca atttttggcg atagtggttc tggttcttat ctatatgata aagaacaaca
     2401 aaaatgggtt ttccatggtg ttaccagtac agttggtttt atcagtagta ccaatatagc
     2461 ctggacaaac tactcgttat ttaataatat tctggtaaac aatttaaaaa agaatttcac
     2521 aaacactatg cagctggatg gtaaaaaaca agagttatca tcgattataa aagataagga
     2581 cctgtctgtc tcaggaggag gggaattaac gctcaagcag gataccgatc ttggcattgg
     2641 cgggcttata ttcgataaga accagacata taaagtgtac ggaaaagata agtcttataa
     2701 aggtgccggg atagatattg ataataatac caccgttgaa tggaatgtta agggcgttgc
     2761 cggagataat ctgcataaaa taggtagtgg tactctggat gtaaaaatag cacagggaaa
     2821 taaccttaaa ataggtaatg ggactgtcat ccttagtgct gaaaaagcct tcaataaaat
     2881 ttacatggcc ggaggtaaag gtacggtaaa aataaatgcc aaagacgctt taagcgaaag
     2941 cggtaatggc gaaatctatt ttaccagaaa tggcggaaca ctggatctaa acggctatga
     3001 ccagtcattt cagaaaatcg cagcaacaga tgcgggaaca accgtaacga actcaaacgt
     3061 gaagcaatca acattatcac ttactaatac tgatgcatat atgtaccatg ggaatgtatc
     3121 aggtaatata agcataaatc atattatcaa tactacccag caacataaca ataatgccaa
     3181 tctgatcttt gatggctcag tcgatatcaa aaacgatatc tctgtccgga atgcacagtt
     3241 aacattacaa ggacatgcga cagaacatgc catatttaaa gaaggcaata acaactgtcc
     3301 aattcctttt ttatgtcaaa aagattattc tgctgccata aaggaccagg aaagcactgt
     3361 aaataaacgt tacaatacgg aatataagtc caacaatcag atagcctctt tttcccagcc
     3421 cgactgggaa agtcgtaaat ttaatttccg gaaattaaat ttagaaaacg caaccctgag
     3481 tataggccgg gatgctaatg taaaaggaca catagaggct aaaaactctc aaattgttct
     3541 gggaaataaa actgcataca ttgacatgtt ctcaggaaga aacattactg gcgaaggttt
     3601 tggattcaga caacagcttc gctccgggga ttcagcaggc gaaagtagtt tcaacggcag
     3661 tctgagtgct caaaacagca aaataactgt tggtgataaa tcaactgtta ctatgactgg
     3721 tgcattatcc ttaattaata cagacctgat tatcaacaaa ggagctactg ttaccgccca
     3781 gggaaaaatg tatgtagata aagctattga actggccgga accctgacat taacaggcac
     3841 ccctacagaa aataataaat acagcccggc aatctatatg tcagatggat ataatatgac
     3901 agaagatggt gccacgttaa aggctcaaaa ttatgcctgg gtcaatggta atataaaatc
     3961 agacaaaaaa gcatctattc tgtttggtgt tgaccagtat aaagaagata acctggacaa
     4021 aaccacacac acaccgctgg ctacaggttt gctgggtggc tttgatactt cttataccgg
     4081 aggtattgat gctcctgctg cctcagccag catgtataac accttatgga gagtaaacgg
     4141 acagtcagcc ctgcaatcat taaaaacccg cgacagtctt ttgttgttta gtaacataga
     4201 gaattcgggt ttccatactg tgactgtaaa cacactggat gccactaata ctgctgtgat
     4261 tatgcgggct gatctgagcc agtctgtaaa tcaatcggat aaactcattg ttaaaaatca
     4321 gttaaccgga cgcaataaca gtctgtcggt cgatatacag aaagtgggaa ataataactc
     4381 aggattaaac gttgacctga taacagcccc aaaaggaagc aataaagaga tatttaaagc
     4441 cagtactcag gccataggtt tcagcaacat atctcctgtg atcagcacga aagaggatca
     4501 ggaacatacc acgtggaccc tgaccggata taaggtggct gaaaatacag catcttccag
     4561 tgcagcaaaa tcgtatatgt ccggtaatta caaagccttc ctgacagaag tcaacaacct
     4621 gaataaacga atgggggatc tgcgtgacac caatggcgag gccggtgcat gggcccgcat
     4681 catgagcgga gcaggttcag cttctggtgg atacagtgac aactacaccc atgtgcagat
     4741 tggtgtggat aaaaaacatg agctggatgg acttgacctt ttcactggtc tgactatgac
     4801 gtataccgac agtcatgcca gcagtaatgc attcagtggc aagacgaagt ccgtcggggc
     4861 aggtctgtat gcttccgcta tatttgactc tggtgcctat atcgacctga ttagtaagta
     4921 tgttcaccat gataatgagt actcggcgac ctttgctggg ctcggaacaa aagactacag
     4981 ttctcattcc ttgtatgtgg gtgctgaagc aggctaccgc tatcatgtaa cagaagactc
     5041 ctggattgag ccgcaggcag aactggttta tggggccgta tcaggtaaac ggttcgactg
     5101 gcaggatcgc ggaatgagcg tgaccatgaa ggataaggac tttaatccgc tgattgggcg
     5161 taccggtgtt gatgtgggta aatccttctc cggtaaggac tggaaagtca cagcccgcgc
     5221 cggccttggc taccagtttg acctgtttgc caacggtgaa accgtactgc gtgatgcgtc
     5281 cggtgagaaa cgtatcaaag gtgaaaaaga cggtcgtatt ctcatgaatg ttggtctcaa
     5341 cgccgaaatt cgcgataatc ttcgcttcgg tcttgagttt gagaaatcgg catttggtaa
     5401 atacaacgtg gataacgcga tcaacgccaa cttccgttac tctttctgat aacagcccgg
     5461 gccgcgtttg cggcccttct tctaccggag agaatatgta ttaccctgtg acagactata
     5521 tcgctcttgc tctcattatt agctttcttt ttctgacatt atttatctgc ctgttatgcc
     5581 ttaaacatga gcgaataaaa aaaagaaact atcaggcaaa aaaatgcaca tattctggag
     5641 catggctgga atgcaactga gttctcatgg ttccgatacg gacagtataa cgaaacgggt
     5701 atttacatct cgatcgagaa gaccattatc attacaatca ccgtttctgg tgggtgcttt
     5761 aaaaaagaat acagcattgt ctcccacatg ctggtcactg acaccataac agaggccacc
     5821 ctgtacgaaa acgggctgta tacgcgccac atcagactca gtcgcccagt atctgacagc
     5881 aaatacccct tgccacccgg atctcagctc attaaaaata tgaccttacg actgcgcctg
     5941 caggatcagc aggaagaaac atccgtgaca ttatttcagg gaaaaatgag taccgacgga
     6001 aataactatt acatcatcaa aggtaaagta a
//
LOCUS       DADMHM010000215         5983 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.220, whole genome shotgun sequence.
ACCESSION   DADMHM010000215 DADMHM010000000
VERSION     DADMHM010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5983)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5983)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5983
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.220"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(1..393)
                     /locus_tag="JN125_003632"
                     /pseudo
     CDS             complement(1..393)
                     /locus_tag="JN125_003632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_151035092.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus outer membrane usher protein"
     gene            complement(579..3887)
                     /gene="icsA"
                     /locus_tag="JN125_003633"
                     /gene_synonym="virG"
     CDS             complement(579..3887)
                     /gene="icsA"
                     /locus_tag="JN125_003633"
                     /gene_synonym="virG"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane autotransporter IcsA"
                     /protein_id="HAY8873257.1"
                     /translation="MNQIHKFFCNMTQCSQGGAGELPTVKEKTCKLSFSPFVVGASLL
                     LGGPIAFAIPLSGTQELHFSEDNYEKLLTPVDGLSPLGAGEDGMDAWYITSSNPSHAS
                     RTKLRINSDIMISAGHGGAGDNNDGNSCGGNGGDSITGSDLSIINQGMILGGSGGSGA
                     DHNGDGGEAVTGDNLFIINGEIISGGHGGDSYSDSDGGNGGDAVTGVNLPIINKGTIS
                     GGNGGNNYGEGDGGNGGDAITGSSLSVINKGTFAGGNGGAAYGYGYDGYGGNAITGDN
                     LSIINNGAILGGNGGHWGDAINGSNMTIANSGYIISGKEDDGTQNVAGNAIHITGGNN
                     SLILHEGSVITGDVQVNNSSILKIINNDYTGTTPTIEGDLCAGDCTTVSLSGNKFTVS
                     GDVSFGENSSLNLAGISSLEASGNMSFGNNVKVEAIINNWAQKDYKLLSADKGITGFS
                     VSNISIINPLLTTGAIDYTKSYISDQNKLIYGLSWNDTDGDSHGEFNLKENAELTVST
                     ILADNLSHHNINSWDGKSLTKSGEGTLILAEKNTYSGLTNINAGILKMGTVEAMTRTA
                     GVIVNKGATLNFSGMNQTVNTLLNSGTVLINNINAPFLPDPVIVTGNMTLEKNGHVIL
                     NNSSSNVGQTYVQKGNWHGKGGILSLGAVLGNDNSKTDRLEITGHASGITYVAVTNEG
                     GSGDKTLEGVQIISTDSSDKNAFIQKGRIVAGSYDYRLKQGTVSGLNTNKWYLTSQMD
                     NQESKQMSNQESTQMSSRRASSQLVSSLNLGEGSIHTWRPEAGSYIANLIAMNTMFSP
                     SLYDRHGSTIVDPTTGQLSETTMWIRTVGGHNEHNLADRQLKTTANRMVYQIGGDILK
                     TNFTDHDGLHVGIMGAYGYQDSKTHNKYTSYSSRGTVSGYTAGLYSSWFQDEKERTGL
                     YMDAWLQYGWFNNTVKGDGVTGEKYSSKGITGALEAGYIYPTIRWTTHNNIDNALYLN
                     PQVQITRHGVKANDYIEHNGTMVTSSGVNNIQAKLGLRTSLISQSCIDKETLRKFEPF
                     LEVNWKWSSKQYGVIMNGMSNHQIGNRNVIELKTGVGGRLADNLSIWGNVSQQLGNNS
                     YRDTQGILGVKYTF"
     gene            4416..5618
                     /gene="virA"
                     /locus_tag="JN125_003634"
     CDS             4416..5618
                     /gene="virA"
                     /locus_tag="JN125_003634"
                     /EC_number="3.4.22.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858314.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-tubulin-specific protease"
                     /protein_id="HAY8873258.1"
                     /translation="MQTSNITNHERNDSSWMSTVKSTTEVSWNKLSFCDVLLKIITFG
                     IYSPHETLAEKYSEKKLMDSFSPSLSQDKMDGEFAHANIDGISIRLCLNKGICSVFYL
                     DGDKIQSTQLSSKEYNNLLSSLPPKQFNLGKVHTITAPVSGNFKTHKPAPEVIETAIN
                     CCTSIIPNDDYFPVKDTDFNSVWHDIYRDIRASDSNSTKIYFNNIEIPLKLIADLINE
                     LGINEFIDSKKELQMLSYNQVNKILNSNFPQQDLCFQTEKLLFTSLFQDPAFISALTS
                     AFWQSLHITSSSVEHIYAQIMSENIENRLNFMPEQRVINNCGHIIKINAVVPKNDTAI
                     SASGGRAYEVSSSILPSHITCNGVGINKIETSYLVHAGTLPSSEGLRNAIPPESRQVS
                     FAIISPDV"
     gene            5797..>5983
                     /locus_tag="JN125_003635"
     CDS             5797..>5983
                     /locus_tag="JN125_003635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY8873259.1"
                     /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWAAICSIAPKIGCIL
                     ETLRVWVRQHERDTGGGE"
BASE COUNT         1839 a         1352 c         1020 g         1772 t
ORIGIN      
        1 tcaggctgta cgcttcccca tgtgatttgc ctcgccactt caccgggctc aggaccccgt
       61 aggatcttca ccgaaaaaaa tgcatcacca gttgctttat tatttgtttt aggtagacct
      121 gttactaatt tatacctact ctgaccaagt ctggataaga aaggcacacc tgcacatttc
      181 tacttggaaa tgttttcttt taccattttg ctcaaaaatt tcaacatcca atattcctcg
      241 tacagaacta ctcaagtcct gaatagaaaa agttccagct ggtacagtag agtcatatat
      301 tactcgacct tgttgagata caacaacacg tgcattagtt tctgcaatac cagtaatctg
      361 aggcgcataa ccacgaatat ttggcggtag cattcgttca tcgctttcta atgcaattcc
      421 tgtgtaacgc caagcaacag cgcattctgg cgcatgatct ggtaaacacg tttggcattg
      481 atcgcaggca taccatcatg tgcacaaaaa cccaccgagc ttttacacgg tgggtcccag
      541 agaaatgcag gacatcaaca cgccctgcat ttttattatc agaaggtata tttcacaccc
      601 aaaatacctt gggtgtctct gtaactgtta ttacccaatt gctgagatac gtttccccag
      661 atgcttaggt tatctgcaag acgccccccc acaccagttt tgagttcaat cacattacgg
      721 ttgcctatct ggtgatttga catgccattc ataattacac catattgctt tgagctccat
      781 ttccaattca cttccaaaaa tggttcgaac ttacgaagag tctccttatc gatacaactc
      841 tgactaatta aggatgtacg caatcccaat tttgcttgaa tattattgac cccagaggat
      901 gtgaccatag tgccattgtg ttcaatatag tcgtttgctt ttaccccatg cctagttatc
      961 tggacttgtg gattgagata caatgcgttg tcaatattat tatgagtagt ccagcgtata
     1021 gttgggtaga tatagccagc ttccaaagct cctgttattc ctttgctgga atatttctca
     1081 ccagttaccc catctccttt gactgtatta ttaaaccaac cgtactgcaa ccaagcatcc
     1141 atatatagac ctgttcgttc tttttcatcc tgaaaccaag aactgtacaa accggcagta
     1201 taaccgctca cagttcctcg tgaactataa ctagtatact tattatgagt tttgctatcc
     1261 tgatatccat aagctcccat aatacccaca tgcaagccat catgatcagt gaagtttgtc
     1321 ttcaaaatat ctccaccaat ctgataaacc atcctgttag ctgtggtttt taattgtcta
     1381 tcagctaaat tatgctcatt atgtccacca acagtacgaa tccacatggt ggtttcgctg
     1441 agctgacctg tagtaggatc aacaatagtg ctaccgtgtc ggtcatagag agaaggacta
     1501 aacatcgtgt tcattgctat caggttagca atataactgc cagcttcagg gcgccatgtg
     1561 tgaatactac cttcacccaa attaagtgaa gatacaagct gtgaactagc tcggcgacta
     1621 ctcatttgag tagactcttg attgctcatc tgttttgatt cttgattatc catctgacta
     1681 gttagatacc acttattggt attcagtcca gatacagtgc cctgtttcag gcgatagtca
     1741 taactaccag caacaatacg gcctttctga ataaaagcat tcttatcaga agaatctgtc
     1801 gaaataattt gaacaccttc aagagtttta tctccagagc ctccctcatt tgtcactgca
     1861 acataggtaa taccagacgc atggcctgta atttccagcc ggtcagtttt actgttgtca
     1921 ttgccgagaa ccgcgcccaa agataatatt ccgccctttc catgccaatt acctttctga
     1981 acataggtct gaccgacatt tgacgaacta ttattgagaa taacatgacc gtttttctcc
     2041 agagtcatgt tacctgtgac aatgacgggg tcaggcaaaa aaggggcatt aatattattg
     2101 attagcacag tcccactatt taataaagtg ttaacagttt ggttcatgcc tgaaaaattc
     2161 aaggtagcac ctttattaac aataacacca gcggtacgtg tcatagcttc aactgtcccc
     2221 atttttagaa tgcctgcatt gatgttggtg agaccagagt aggtattttt ttccgccaaa
     2281 atgagagttc cctcccctga ttttgttagg gattttccgt cccagctatt tatattatga
     2341 tggctgagat tatctgccag aatagtacta acagtaagtt cagcgttttc tttcagattg
     2401 aactctccat gactgtcgcc atctgtatca ttccagctca aaccgtagat caatttattc
     2461 tggtcactga tatagctttt tgtatagtca atagcaccag tagtgagtaa cggattgatg
     2521 atagatatat tagaaacact gaaacctgtt atccctttat ctgcacttag cagtttatag
     2581 tccttctgcg cccagttatt tataatagct tccactttta cattgttgcc aaatgacata
     2641 tttccagaag cttccagact actgattcca gctaaattta aagaactgtt ctcaccaaaa
     2701 gaaacgtcac ctgaaacagt gaatttgtta cctgatagtg aaacagttgt acaatcacca
     2761 gcacataaat caccttcaat agttggagtg gtcccagtgt aatcattgtt gataattttc
     2821 agaatggatg aattgttaac ctgtacatca ccagtaatga cagaaccttc atggagtatt
     2881 aatgaattgt ttccaccagt gatgtggata gcattacctg ctacattttg tgttccatca
     2941 tcttctttac ctgaaattat atatccgcta ttagcaatgg tcatattgct accatttata
     3001 gcatcccccc aatgtccacc attaccgcct aaaatagctc cattgttgat tatagacagg
     3061 ttatctcctg tgatagcatt accaccgtag ccatcataac cataaccgta agcagcacct
     3121 ccgttgcctc cagcgaacgt gcccttattg attacagaga ggctgcttcc tgtgatggca
     3181 tcacctccat taccgccatc accctcacca taattgttac ctccattacc accggaaata
     3241 gtccctttgt tgattatggg tagattgact cctgtgacgg catcacctcc attcccccca
     3301 tcactatcac tataactatc gccaccatgt ccacctgaaa taatttctcc atttattata
     3361 aacagattgt ctcctgtaac agcctcacca ccatcaccgt tatggtcagc accgctaccg
     3421 ccgctaccac caagaatcat gccttgattg attatagaca agtcagatcc ggtaatagag
     3481 tcaccaccat taccgccaca actattacca tcattattat caccagcacc accatgacct
     3541 gcgctaatca taatatcaga gttaatccgt agcttagttc tagatgcatg agaggggttg
     3601 gaagaagtta tataccacgc atccattcca tcttcaccag ctcccaaggg agaaagtcca
     3661 tcaacaggtg ttaataattt ttcataattg tcctctgaaa aatgaagttc ttgagtaccc
     3721 gaaagaggaa tagcaaaagc tattggcccc ccgagcaaca gggatgcacc aacaacaaaa
     3781 ggagaaaaag acaatttgca tgttttttcc tttaccgtag gtaattctcc ggcccccccc
     3841 tgtgaacatt gggtcatatt acaaaaaaat ttgtgaattt gattcatgca ctatattatc
     3901 agtaagtggt tgataaaccc ctaaaaagat tccgttttat ccggaataaa gggacgatat
     3961 atgcaaaaac atattaaaca aagcctcaac caaaacatga gagctgtgtt atatatcaat
     4021 gcaacgggag aaatttacct gtgtcttgct ttgaaaaaaa gagggggaaa gctatatgtt
     4081 cgataataaa ttaataattt tactatgata gtctgcttca gaccgcaact tttcagttct
     4141 ttctgtacgc ttgcccaaag tttaaccact ttgtttttct atacacccaa tggttctatc
     4201 tgccccttga tgttaatccc caaagccaat aacatgaatg tattcatatc acaactttcc
     4261 taccagactc tccaatgcaa taactgcata attgttttta gtggaaatgt atcgttttct
     4321 taaagagaag aataacattc cattttatta tgttcccaat ttaattatat taatatatat
     4381 tggcatcaat aggaaaatac atcaggagaa atcaaatgca gacatcaaac ataactaacc
     4441 atgaaagaaa tgactcatca tggatgtcaa ctgtcaaatc aactacagaa gtaagttgga
     4501 ataaattgag tttttgtgac gttttactga aaataataac tttcggaata tattctccac
     4561 acgaaactct agccgaaaaa tatagcgaaa aaaaactaat ggatagtttc tcaccatcac
     4621 tatcacaaga taaaatggac ggagagtttg cccacgcaaa catagatggc atttcaatac
     4681 ggctatgcct taacaaaggc atatgttcgg ttttttatct tgatggagat aaaatacaat
     4741 ccactcaact ttcatcaaaa gaatataata acttgttaag ttcactcccc ccaaaacaat
     4801 tcaacttagg aaaagtacat actattacag ctccggtatc agggaatttt aaaactcaca
     4861 agcctgcacc agaagttatt gaaacagcca ttaattgctg tacatcgata ataccaaacg
     4921 atgattactt ccccgttaaa gacactgatt ttaatagtgt ttggcatgat atttacagag
     4981 atattcgagc atctgacagc aatagtacaa aaatatattt caacaatatt gaaataccac
     5041 taaaattaat tgcagatcta attaatgagt tagggattaa tgaattcatt gatagcaaaa
     5101 aagagcttca aatgctaagt tacaaccaag taaataaaat actcaattca aacttccccc
     5161 aacaagacct atgttttcaa acagaaaaac ttttgtttac ttcactcttt caagaccctg
     5221 catttatatc cgcactaaca tctgcattct ggcaatctct tcacatcacg tcttcctctg
     5281 tggaacacat atatgcccaa attatgtccg aaaacataga aaacaggctt aatttcatgc
     5341 ctgaacaacg agttattaac aattgtggac atattataaa aatcaacgca gttgtcccta
     5401 aaaacgacac tgcaatctct gcctctgggg ggagggctta cgaagttagc tcatcaatat
     5461 taccatcgca cataacatgt aatggtgttg gtattaataa aatagaaaca agctatctcg
     5521 ttcatgctgg aacacttcca agcagtgaag ggcttcgcaa tgctatccct ccagaaagtc
     5581 gtcaagtatc atttgccatc atatctcctg atgtttaagc caatattata ttggctgcca
     5641 gactgtaaaa aaacgttctt cagaacagct ctataaacta ttaaaccaaa gctaaaagga
     5701 tggggaccaa tagaatctca gcccatcctt tttatatcat tatgaaccgc cccggaaatc
     5761 ctggagacta aactccctga gaaagaggta aacaggatga ctaaaaatac acgtttttcc
     5821 cctgaagtcc gtcaacgggc agttcgtatg gttctggaaa gtcagggcga atatgactca
     5881 caatgggcag cgatttgttc cattgctcca aagattggct gtatactgga gactctgcgt
     5941 gtctgggtac gccagcatga gcgggatacc gggggcggtg agg
//
LOCUS       DADMHM010000216         5980 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.221, whole genome shotgun sequence.
ACCESSION   DADMHM010000216 DADMHM010000000
VERSION     DADMHM010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5980)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5980)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5980
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.221"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            251..616
                     /gene="queD"
                     /locus_tag="JN125_003636"
     CDS             251..616
                     /gene="queD"
                     /locus_tag="JN125_003636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase QueD"
                     /protein_id="HAY8873260.1"
                     /translation="MMSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGE
                     VDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPL
                     LSAVMVKETCTAGCIYRGE"
     gene            694..1962
                     /locus_tag="JN125_003637"
     CDS             694..1962
                     /locus_tag="JN125_003637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417246.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HAY8873261.1"
                     /translation="MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNL
                     SGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGVTTFSSLQPGGESWSVLRA
                     RFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVL
                     AERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGA
                     FLYTNQQTPSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRPLIKNTESLEYGAHLVP
                     EGGLHSMPVQYAGNGWQLVGDALRSCVNTGISVRGMDMALTGAQAAQTLISACQHREP
                     QNLFALYHHNVERSLLWDVLQRYQHVPALLQRRGWYRAWPALMQDISRDLWDQGDKPV
                     PPLRQLFWRHLRRHGLWHLAGDVIRSLRCL"
     gene            1953..2213
                     /locus_tag="JN125_003638"
     CDS             1953..2213
                     /locus_tag="JN125_003638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311649.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HAY8873262.1"
                     /translation="MSVAHNLWRVADAPHIVPADSVERHMVQWLINACPAGLFSLTPE
                     GDLRVDYHGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG"
     gene            2230..2805
                     /locus_tag="JN125_003639"
     CDS             2230..2805
                     /locus_tag="JN125_003639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate responsive antiterminator"
                     /protein_id="HAY8873263.1"
                     /translation="MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTIS
                     NIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGF
                     FCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVC
                     DEEDACNAINAGVVALSTTNTGVWTLAKKLL"
     gene            complement(2953..3813)
                     /locus_tag="JN125_003640"
     CDS             complement(2953..3813)
                     /locus_tag="JN125_003640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417249.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HAY8873264.1"
                     /translation="MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQV
                     LDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHW
                     GNALTATLQTEKRPLCLSLARQAGAAKNATLPSGIQQLNIVPGALPDWLVSTEDLKNV
                     TRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISG
                     HLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEA
                     LVTNIHADCQ"
     gene            complement(3810..4589)
                     /locus_tag="JN125_003641"
     CDS             complement(3810..4589)
                     /locus_tag="JN125_003641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417250.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta/FixA
                     family protein"
                     /protein_id="HAY8873265.1"
                     /translation="MNILLAFKAEPDAGMLAEKEWQAAAQGKSGPDISLLRSLLGADE
                     QAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPE
                     FVARHIAEWQHQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWTCFTQVERFTLDALFI
                     TLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIICKTVAAEMPA
                     MQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP"
     gene            complement(4567..5976)
                     /locus_tag="JN125_003642"
     CDS             complement(4567..5976)
                     /locus_tag="JN125_003642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8873266.1"
                     /translation="MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRI
                     AALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWIS
                     DHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFS
                     PRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWG
                     TPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFN
                     SVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHR
                     KFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIR
                     SLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKA
                     LPLVAAGNVGGANEHSVSV"
BASE COUNT         1460 a         1623 c         1523 g         1374 t
ORIGIN      
        1 aagataaggt taacggggtg aacggtgtgg attaaagacg ggatagcgat aactaataac
       61 caaatcgact aacctgtttt agcaatagtc tttaacaaca aaatagatta accaacccaa
      121 tgaaaaacaa atgaatttag ccaatcatta agataaatca gcgattttgc gcaacaaagt
      181 cgttttagat aatgcgaaaa aacagccttt ccggtactct acggcggttt tatcgtcctg
      241 tagagaaatt atgatgtcca ccacgttatt taaagatttc accttcgaag ccgctcaccg
      301 cttaccacac gtcccggaag ggcataaatg tggtcgcctg cacgggcatt cctttatggt
      361 gcgactggaa attaccgggg aagtcgatcc gcatacgggc tggattatcg atttcgctga
      421 actaaaagcg gcgtttaagc caacttatga gcgcctcgat caccattatc tcaatgatat
      481 tccaggtctg gaaaacccaa ctagcgaagt tttagcaaaa tggatttggg atcaggttaa
      541 acccgttgtg ccgctgttaa gtgcggtgat ggtaaaagaa acctgcaccg ctggttgtat
      601 ctatcgcggc gaatgataag agtgtgtcgg cggtcaattt cccttaagta acgctatgtt
      661 agggtattgt gttcaggata tctggggcat gacatggaag acgactgcga cattattatt
      721 attggtgccg gtattgcagg caccgcttgc gcgttacgct gcgcgcgagc gggtttatcc
      781 gttttgttac tggaacgcgc tgaaatcccc ggcagcaaaa atctttccgg cggacggtta
      841 tatacccatg cactcgcgga actcctccct cagtttcatc tgaccgcgcc tcttgaacga
      901 cgcatcactc acgaaagcct ttccctgtta acgcccgatg gcgtaacgac gttttccagc
      961 ttacagcccg gcggtgaatc ctggagtgta ttacgtgcac ggttcgatcc gtggctggtt
     1021 gccgaagccg aaaaagaagg tgtcgaatgt atccccggag cgacggtgga tgcactgtat
     1081 gaagaaaacg gcagagtctg tggcgttatt tgtggtgacg atattctccg cgcccgttat
     1141 gtggtgctgg cagaaggtgc caacagcgtc ctggctgaac gtcacgggtt agtgactcgt
     1201 cctgctggcg aagcgatggc gttggggatc aaagaagtgc tgtcgctgga aacatccgct
     1261 attgaagaac gttttcatct ggagaataac gaaggcgcag cgttgctgtt cagcggcgga
     1321 atctgtgatg acttacccgg cggcgcattt ctttatacta atcaacaaac gccctcgtta
     1381 gggattgttt gcccgctctc ttcccttacg caaagtcgtg ttccggcaag cgagctgctg
     1441 actcgcttta aagcgcatcc ggcagtgcgc ccgcttatca aaaacacgga atcactggag
     1501 tatggtgcgc atctggtgcc agaaggtggc ttgcacagta tgccggtgca atacgccggt
     1561 aacggctggc agctggtggg cgatgcgttg cgcagttgcg tcaataccgg aatttccgtg
     1621 cgcggcatgg atatggcgct gactggcgcg caggcggcac aaacgctgat aagcgcctgc
     1681 cagcaccgcg agccgcaaaa tctgtttgcg ctttatcatc acaacgtaga gcgcagcctg
     1741 ctatgggatg ttctacaacg ttatcagcat gttccggcgc ttttgcaacg ccgtggctgg
     1801 tatcgggcgt ggcctgcgtt aatgcaggat atttcccgcg atttatggga tcagggtgat
     1861 aaacctgttc caccgctgcg ccagttattc tggcgtcatt tacgtcgtca tggcctgtgg
     1921 catctggcgg gcgatgttat caggagtctg cgatgtctgt agcccataat ctctggcgcg
     1981 ttgctgatgc gccgcacatt gttccggctg actccgttga gcgtcatatg gtacaatggt
     2041 tgattaacgc ctgtccggca ggtctttttt cgctcacacc ggaaggtgac ttacgcgttg
     2101 attatcacgg ctgcctggag tgtggcacct gccgtttgct gtgcgacgaa tccacactac
     2161 aacagtggcg ctatccgcct tccggattcg gcatcaccta ccgctttgga taaataataa
     2221 ggataattta tgcccctctt acacctgctc cgccagaatc cggtgattgc tgccgttaaa
     2281 gataatgcca gcctgcaact ggcaatcgac tctgaatgcc agtttatttc cgtgttgtac
     2341 ggcaatatct gcaccatcag taatatcgtt aaaaagatta agaacgccgg gaaatatgct
     2401 tttattcatg ttgatttgct ggaaggcgcg tcaaataaag aagtcgtgat tcagtttttg
     2461 aaactggtga ccgaggcgga cggcattatc agtaccaaag cctcaatgtt gaaagcggca
     2521 agagcggaag gttttttctg tattcatcgc ctgtttattg ttgattcaat ttcgtttcac
     2581 aacattgata agcaagttgc gcaatcgaat ccggattgta ttgagatcct gccaggctgt
     2641 atgcccaaag tgctgggctg ggtgacagag aaaatccgcc aaccgctgat tgccggtggg
     2701 ctggtgtgcg atgaagaaga tgcgtgtaat gcgattaacg cgggtgtcgt ggcgctttcc
     2761 accacgaata ccggggtctg gacgttagcg aaaaaattac tttgacggga taatcgtaac
     2821 caattgaatt tggtttgatt tgtaggccgc acgccacatc cgacattcag cgcctgatgc
     2881 gacgcttgac gcgtcttatc aggcctacaa gtccccaggc cagaaccgta ggcaggatca
     2941 tccggcaaca cattattggc aatctgcgtg aatgtttgtc accagtgcct ccagcaccac
     3001 tttccagtca tcaaccacgc caacatctgc ctgtgaaaat accgcagcgc tggcgtcatg
     3061 attaatcgcc accacaaact tgctattgcg tacgcccgcc attaacgctg ctgcgccgga
     3121 agcgccaaca acaatacaca cctcaggtgc cagcaaatgt ccggaaatac caatcacttt
     3181 ttcagcatca acgccaccgt tcatcactcg cgcccgactg tagcccactt cggctcccag
     3241 cttttctgcc agcatagcga tttcctggtt atctgcctct ccgccctgcc ccaccaccag
     3301 cacccgtctg gcctcagcta atgggtcgcg agtaacattt ttcagatcct ctgtgctaac
     3361 cagccagtcg ggaagcgcac ccgggacaat gttcagttgt tgtattccag agggcaacgt
     3421 ggcgtttttc gctgctcccg cctgacgcgc cagggaaagg catagcgggc gtttttctgt
     3481 ttgcagcgtc gccgttagcg catttcccca gtgggatttg cgcacgctta cggttggaat
     3541 atctaacgaa gtcacctggc agatgcttgc accatgtaaa cgccaggcca gccgggtcga
     3601 cagttcatcg ccaaacgttc ccggcggaaa gagaacaacg tccgcaggcg ttcgctgcca
     3661 ctgttccacc aacgcatcca gcacctgttc cgccactaca ggctgaggtt caatctgcca
     3721 gtgcgccagg gtacaaccac tgaaatcctg cgccgccagc cagcttgcta ttgcggcatt
     3781 ctcctgattt attgtcacaa ttgcgatatt catggctgca tcctttggcg taaatagtcc
     3841 tgccatagct tttgagcttt ttctgctacc gtttgcccat caatcagcgt cgctccgcgt
     3901 cgttgctctg ctcttgccag ttgcagacac tgcatcgctg gcatttcggc agcaacagtt
     3961 ttacagataa tttctgcttt ccccgcagcc attcgctggc gcattcccgg tactggcaag
     4021 gccacttcac cgcactgacg cacggcaatc accgcaggca agcgaacccg gcaacaacgc
     4081 aacccatgtt cagtacgctg ttcgagggtg ataaacagcg cgtcgagagt gaaacgctcc
     4141 acctgggtga agcaggtcca gcccagcatt tccgccagca aaaatggcgt ttgcccattc
     4201 tgcccttcgc tgctttggca gccggtaatt atcagatcca gcggattctg atgctgccat
     4261 tcggcaatat ggcgagcgac aaattccggc gcaaagcgca gatctgccgc cgtctccagc
     4321 aatacagctt cctcaaaccc aagagccatg agatagcgca gccagtgcaa tgcccgttca
     4381 tcccccatgc tcaacgcggt taaagacatc ggcgtaccgt tttttctctg cgccaacagc
     4441 agcgcggcag cggcctgttc atcagcaccg agtaaacttc gcagtagcga aatatccggt
     4501 ccgcttttac cctgagccgc cgcctgccac tctttttccg ccagcattcc ggcatccggt
     4561 tcggctttaa acgctaacag aatgttcatt cgcacctcct acatttcccg ccgccaccag
     4621 cgggagggct ttagtttctg gtgcccatag ccaggtcaca acaaaaccaa ccaacaacac
     4681 tgtcgccagg agcaataagg tgacttgcat tccccactgc gccagcaccc acggcagcag
     4741 gccagtactt accgccgcgc caagtcgact catggcggtg gcaaaaccga cgcccagcga
     4801 gcgaatgtca gtaggaaaac tttccgcagg caaaatgccc accagattac tgactgccga
     4861 aatggtggtg ctgaagagaa caaaaagcag cagcgttaat gaactgccgg aaggcaaaca
     4921 ggccattact accagcgttg ccgccagcag caaaaaactt cccagcaaaa atttgcgatg
     4981 tgccagcagg tgcgtcagaa ctaatcccag cagcgcgccc acaattaaca acgcattaag
     5041 catcaggctg gcagtcagcg catcttccag accaatagtc tgggcgatag ttggcagcca
     5101 ggtataaatc acaaaccatg ggattacgag gcagacaaag aagacgctgt taaacgccgt
     5161 gcgccgccag taacgcgaag agaacaaggt tttgatgtgt ttatgggtcg ccgttaccac
     5221 ttcatcgccc agtaaaacat ggggaccaaa atagcgatgc acgatagcgt gagcttctgc
     5281 aaaacgcccc tggcgcagta gccagcgtgg tgattctggc gttccccagc gtaataacgt
     5341 aatcaacaac gcgggcagag ctgccgatgc cagtagccag cgccaggcct ccgggttttc
     5401 ggaaataaag tgatgtccgg caatacttgc cagcacatag cctacggtcc acaccacgct
     5461 gaatgcgccc agcaaaatac cgcgatggcg gcgcggggaa aattcagcca gcaaggtgtg
     5521 acctactgaa taatcgcctc ccagaccaat gccaatcaaa atgcgcagtc caataagatg
     5581 ctctggcgtg gtggcaaaaa attgtaaaaa cgaagcaagc gtaatcagca aaaagctgaa
     5641 ggtgaagatt ttttgccgac caatatggtc ggagatccac ccaagaacca ggctgccaag
     5701 gaacaaacca aggagcgccg agccgccgat cattcccgcc ataaacggcg tcagttgcat
     5761 ggcgggcgta agctgaataa tggcgtaacc aatgacgccg agaacataac cgtcggtcag
     5821 gtgtgcgccg aaagtgagcg cagcaatgcg gcagtgaaaa cggttaagcg gtaaatcatc
     5881 cattcgcacc ggtgaagtgt tcatctttac cccttcattg tccggtaata agaacggctt
     5941 ctcgcctgag aagccgaaaa ggcaacgtcc cgtcatcgcg
//
LOCUS       DADMHM010000217         5947 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.222, whole genome shotgun sequence.
ACCESSION   DADMHM010000217 DADMHM010000000
VERSION     DADMHM010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5947)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5947)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5947
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.222"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(16..522)
                     /gene="mug"
                     /locus_tag="JN125_003643"
     CDS             complement(16..522)
                     /gene="mug"
                     /locus_tag="JN125_003643"
                     /EC_number="3.2.2.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="G/U mismatch-specific DNA glycosylase"
                     /protein_id="HAY8873267.1"
                     /translation="MVEDILAPGLRVVFCGINPGLSSAGTGFPFAHPANRFWKVIYQA
                     GFTDRQLKPQEAQHLLDYRCGVTKLVDRPTVQANEVSKQELHAGGRKLIEKIEDYQPQ
                     ALAILGKQAYEQGFSQRGAQWGKQTLTIGSTQIWVLPNPSGLSRVSLEKLVEAYRELD
                     QALVVRGR"
     gene            647..722
                     /locus_tag="JN125_003644"
     tRNA            647..722
                     /locus_tag="JN125_003644"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:680..682,aa:Ile,seq:cat)
     gene            complement(776..1540)
                     /gene="nfeF"
                     /locus_tag="JN125_003645"
     CDS             complement(776..1540)
                     /gene="nfeF"
                     /locus_tag="JN125_003645"
                     /EC_number="1.16.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent ferric chelate reductase"
                     /protein_id="HAY8873268.1"
                     /translation="MNNSPRYPQRVRNDLRFRELTVLRVERISAGFQRIVLGGEALDG
                     FTSRGFDDHSKLFFPQPDAHFVPPTVTEEGIVWPEGPRPPSRDYTPLYDELRHELAID
                     FFIHDGGVASGWAMQAQPGDKLTVAGPRGSLVVPEDYAYQLYVCDESGMPALRRRLET
                     LSKLAVKPQVSALVSVRDNACQDYLAHLDGFNIEWLAHDEQAVDARLAQMQIPADDYF
                     IWITGEGKVVKNLSRRFEAEQYDPQRVRAAAYWHAK"
     gene            1828..2451
                     /locus_tag="JN125_003646"
     CDS             1828..2451
                     /locus_tag="JN125_003646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HAY8873269.1"
                     /translation="MSHHHEGCCKHEGQPRHEGCCKGEKSEHEHCGHGHQHEHGQCCG
                     DRHGRGGGRRQRFFGHGELRLVILDILSRDDSHGYELIKAIENLTQGNYTPSPGVIYP
                     TLDFLQEQSLITIREEEGGKKQIALTEQGAQWLEENREQVEMIEERIKARCVGAALRQ
                     NPQMKRALDNFKAVLDLRVNQSDISDAQIKKIIAVIDRAAFDITQLD"
     gene            complement(2605..4125)
                     /locus_tag="JN125_003647"
     CDS             complement(2605..4125)
                     /locus_tag="JN125_003647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311981.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HAY8873270.1"
                     /translation="MSSHPYVTQQNTPLADDTTLMSTTDLQSYITHANDTFVQVSGFT
                     LQELQGQPHNMVRHPDMPKAAFADMWFTLKKGEPWSGIVKNRRKNGDHYWVRANAVPM
                     VREGKISGYMSIRTRATDEEIAAVEPLYKALNAGRTSKRIHKGLVVRKGWLGKLPSLP
                     LRWRVRGVMTLMFILLAAMLWFVAAPVVTYFLCVLVVLLASACFEWQIVCPIENVARQ
                     ALKVATGERNSVEHLNRSDELGLTLRAVGQLGLMCRWLINDVSSQVSSVRNGSETLAK
                     GTDELNEHTQQTVDNVQQTVATMNQMAASVKQNSATASAADKLSITASNAAVQGGEAM
                     TTVIKTMDDIADSTQRIGTITSLINDIAFQTNILALNAAVEAARAGEQGKGFAVVAGE
                     VRHLASRSANAANDIRKLIDASADKVQSGSQQVHAAGRTMEDIVAQVKNVTQLIAQIS
                     HSTLEQADGLSSLTRAVDELNLITQKNAELVEESAQVSAMVKHRASRLEDAVTVLH"
     gene            4542..5921
                     /gene="ygjG"
                     /locus_tag="JN125_003648"
                     /pseudo
     CDS             4542..5921
                     /gene="ygjG"
                     /locus_tag="JN125_003648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417544.5"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine aminotransferase"
BASE COUNT         1431 a         1621 c         1512 g         1383 t
ORIGIN      
        1 tttcggtggc gttttttatc gcccacgcac taccagcgcc tggtccagct cgcgatacgc
       61 ttcaaccagt ttctctagtg aaacgcgact taaaccgctg ggatttggca gcacccaaat
      121 ctgcgtcgaa ccaatggtga gcgtttgttt cccccactgt gcaccgcgct ggctgaatcc
      181 ctgttcatat gcttgtttgc ccagaatcgc caacgcctgc ggctgataat cttcaatttt
      241 ttcaatcagc ttacgcccac ctgcgtgcag ctcctgcttt gaaacttcat tggcttgcac
      301 cgttggacgg tctaccagtt tggtgacgcc acaacgataa tccagcagat gctgtgcctc
      361 ctgcggcttc aactgacggt cggtaaaccc ggcctgatat atcaccttcc agaagcgatt
      421 tgctggatga gcaaagggaa aaccagtccc ggcggatgaa agcccagggt tgataccgca
      481 aaacacgacc cgtaaccctg gagccaaaat atcctcaacc atatttactc ctttctaaca
      541 tcaccaggaa aagtataacg gattgaaaat acattgttta taaaaacagc aggcgcacgg
      601 taatggctgg attgcgacac ggagttactt tataatccgc taccatggcc ccttagctca
      661 gtggttagag caggcgactc ataatcgctt ggtcgctggt tcaagtccag caggggccac
      721 cagatatagc aaaggctgac gagaaatcgt cagccttttt ctttttatat atcagttact
      781 ttgcgtgcca gtaagccgct gcacgtaccc gctgtgggtc atactgttcc gcttcaaagc
      841 ggcggcttaa attcttaacg actttacctt cgccggttat ccagatgaag taatcatcgg
      901 cagggatttg catctgcgcc agacgcgcat ctaccgcctg ctcatcatgt gccagccatt
      961 cgatattaaa accatcaagg tgcgcgagat aatcctgaca ggcgttatcc cgcacgctaa
     1021 ccagcgcact aacttgcggt ttaacggcaa gtttgctcaa cgtttccagg cggcggcgca
     1081 gtgcgggcat tccggattca tcgcagacat acagctgata cgcgtaatct tccggcacca
     1141 ccagcgaacc gcgcggacca gccaccgtaa gtttatcgcc cggttgcgcc tgcatcgccc
     1201 agccgctggc gaccccaccg tcgtgaataa agaaatcgat cgccagttca tggcgtagtt
     1261 cgtcatacag cggcgtatag tcacgcgacg gtgggcgtgg tccttccggc cagacgatgc
     1321 cctcttccgt taccgttggc ggcacaaagt gagcgtcagg ttgaggaaag aagagtttgc
     1381 tgtgatcgtc aaagccgcgc gatgtaaaac cgtccagcgc ctcgccgccg aggacaatgc
     1441 gctgaaaacc ggcgctgatg cgctcaacgc gtaacacagt cagttcacgg aagcgcagat
     1501 cattgcgaac gcgctgcggg tagcgggggg agttattcat tgttatcgcc ttcgtgatgg
     1561 taatcagata tatctaaata attttcgtaa atgataatga ttgttaatca tgataaatgc
     1621 aagcgattag tagaactgat atgtctatag tctgataaga cgaaccgcct cttctcaggc
     1681 atcattactc aacgccggat gcggcgtgaa cgccttatcc ggcctacgtg tgagatgagt
     1741 ccacatttaa aaatcatttt tattcttgca agagtgctca tatcagatat aaattagata
     1801 tatctaatca agcaaaagga ggctgatatg agccatcatc acgaagggtg ttgtaaacat
     1861 gaaggccagc cacgccatga gggctgctgc aaaggtgaga agtcagaaca cgagcactgc
     1921 ggacacggtc accagcatga acacggtcaa tgctgcggtg atcgccacgg tcgcggcggc
     1981 ggtcgtcggc aacgtttctt tggtcacggt gaattgcgtc tggtgattct ggatattctc
     2041 tcgcgcgatg acagccacgg ttacgaattg attaaagcga ttgagaatct aacccaaggg
     2101 aattacaccc caagcccggg cgtcatctac ccaacgctgg attttctgca ggagcagtcg
     2161 ctgattacca tccgcgaaga ggaaggtggt aagaagcaga ttgcgctgac cgaacaaggc
     2221 gcgcagtggc tggaagaaaa ccgcgaacag gtggagatga ttgaagaacg catcaaagcg
     2281 cgttgcgttg gcgcggcact gcgccagaac ccgcaaatga agcgggcgct ggataatttt
     2341 aaagcggtgc tggatttacg cgtcaaccag agcgatatca gtgatgcaca aataaaaaag
     2401 atcattgcgg tgatcgaccg cgccgctttt gatattacgc aactggatta atcgccgcat
     2461 ccgccagtgg cgcggtgcaa ttgccggatg cgacgcttga cgcgccttat ccggcctaca
     2521 cccgctacac accccgcagg cctgataaga tgcgccagca tcgcatcagg cattgtgctc
     2581 caaccgccgg atccggcata ccgattaatg cagcaccgtc accgcgtctt ccagtcggct
     2641 ggcgcggtgt ttcaccatcg ccgacacctg cgcactctct tccaccagct cagcattttt
     2701 ctgggtgatc aggttaagct catccactgc acgggtcagg ctggaaagcc catcggcctg
     2761 ttccagcgtt gaatggctaa tctgggcgat caactgggtg acgtttttca cctgtgccac
     2821 aatatcttcc atcgtccgtc cggcggcgtg tacctgctgc gaaccggatt gcaccttatc
     2881 agcactggca tcaatcagct tgcgaatatc gttggcagca ttagcgctgc ggctggctaa
     2941 atgacgcact tcccctgcca ccactgcaaa acctttgccc tgttcgccgg cacgcgccgc
     3001 ttccaccgcc gcattcaggg ccagaatatt ggtctgaaac gcaatatcgt taatcagcga
     3061 agtaatggtg ccaatgcgct gggtactgtc ggcgatatcg tccattgtct tgatcaccgt
     3121 ggtcatcgcc tccccaccct gcactgccgc attactggcg gtgatagaaa gtttatcggc
     3181 agccgacgcc gtggcagagt tctgtttcac cgacgccgcc atttggttca tggtcgccac
     3241 cgtttgctga acgttatcaa ctgtctgctg ggtatgttcg ttcagttcat cggtgccttt
     3301 cgccagcgtc tcactgccat ttctgacact ggacacctgg cttgagacat cgttaattag
     3361 ccaacggcac atcaggccaa gctgccctac cgcgcgtaat gtcagcccca gctcatcgct
     3421 gcgattcagg tgctcaacac tattacgctc tccggtcgcc accttcagtg cctgacgggc
     3481 aacattttct atcgggcaca caatctgcca ttcaaaacaa gcgcttgcca acaataccac
     3541 taacacacag aggaaatacg tcaccaccgg ggcagcaaca aaccaaagca tggccgccag
     3601 caagataaac atcagggtca taactccacg cacccgccag cgaagcggta atgaaggcag
     3661 tttacccagc cagcctttac gcaccaccag gcctttatga atacgcttac tggtacgtcc
     3721 ggcgttcagc gctttgtaca gcggctccac cgccgcaatc tcttcatccg tcgcccgggt
     3781 acgaatcgac atatagccac tgatttttcc ctcgcgcacc atcggtaccg cattggcccg
     3841 cacccaataa tggtcgccat ttttgcggcg atttttcacg atgccgctcc agggctcccc
     3901 ttttttcagg gtgaaccaca tatccgcaaa cgccgctttt ggcatatccg ggtgacgcac
     3961 catattgtgc ggctgccctt gtaactcttg caaggtaaag ccgctcacct gcacaaaagt
     4021 gtcattagca tgagtgatat agctttgcag atcggtagtg gacatcagag tggtatcgtc
     4081 cgccagcggg gtattttgct gggtgacata cggatgagaa gacatgttcg cgtcctatgc
     4141 aggttatatg gttgttaact tcttgtcaga gtttatgtcg gccccgctgc ggttatcttt
     4201 aaccgattaa tttgatttag atcgcaattt gcgattaaag cacaaatcta attccttgat
     4261 ttaaaatact ttcactctgt tactatacga aaacgttaat tatcttgccc aaaatcaagc
     4321 aattatcgcc ctgaaaacgt gcatttgcac agcaatcatc aaatccatac ccgacaaaaa
     4381 ccgtgcaaaa taacaacgaa tgttaacaaa tagcattaaa tactgcgcaa atgataacca
     4441 catttgtgtt tatcccgatt ttcgcgatcg cagccggagt ggcgcaatcc ctgcaatact
     4501 taaatcggta tcatgtgata cgcgagcctc cggagcatat tttgaacagg ttaccttcga
     4561 gcgcatcggc tttagcgtgc agcgcccacg ccctgaatct cattgagaag cgaacgctgg
     4621 atcatgagga gatgaaagca cttaaccgag aggtgattga atacttcaaa gagcatgtca
     4681 atccggggtt tttagagtat cgcaaatctg ttaccgccgg cggggattac ggagccgtag
     4741 agtggcaagc gggaagttta aatacgcttg tcgacaccca gggacaggag tttatcgact
     4801 gcctgggagg ttttggaatt ttcaacgtgg ggcaccgtaa tccagttgtg gtttccgccg
     4861 tacagaatca acttgcgaaa caaccgctgc acagccagga gctgctcgat ccgttacggg
     4921 cgatgttggc gaaaaccctt gctgcgctaa cgcccggtaa actgaaatac agcttcttct
     4981 gtaatagcgg caccgagtcc gttgaagcag cgctgaagct ggcgaaagct taccagtcac
     5041 cgcgcggcaa gtttactttt attgccacca gcggcgcgtt ccacggtaaa tcacttggcg
     5101 cgctgtcggc cacggcgaaa tcgaccttcc gcaaaccgtt tatgccgtta ctgccgggct
     5161 tccgtcatgt gccgtttggc aatatcgaag ccatgcgcac ggctcttaac gagtgcaaaa
     5221 aaaccggtga tgatgtggct gcggtgatcc tcgaaccgat tcagggtgaa ggtggcgtaa
     5281 ttctgccgcc gccgggctat ctcaccgccg tacgtaagct atgcgatgag ttcggcgcac
     5341 tgatgatcct cgatgaagta caaacgggca tggggcgcac gggcaagatg ttcgcctgcg
     5401 ggcatgagaa cgtacagccg gatatcctct gccttgccaa agcgctcggc ggcggcgtga
     5461 tgccgattgg cgcgaccatc gccactgaag aggtgttttc agttctgttc gacaacccat
     5521 tcctgcatac caccaccttt ggcggcaacc cgctggcctg tgcggcggcg ctggcgacca
     5581 tcaatgtgtt gctggagcag aacttaccgg ctcaggctga gcaaaaaggc gatatgttgc
     5641 tggacggttt ccgtcaactg gcgcgggaat atcccgatct ggtacaggaa gcgcgtggta
     5701 aagcgatgtt gatggcaatt gagtttgttg ataacgaaat cggctataac tttgccagcg
     5761 agatgttccg ctagcgcgta ctggtggccg gaacgctcaa taacgccaaa acgatccgca
     5821 ttgaaccgcc actgacactg accattgaac agtgtgaact ggtgatcaaa gcggcgcgta
     5881 aggcgctggc ggccatgcga gtaagtgtcg aagaagcgta atatcaaatc ggatggcgat
     5941 acgacgt
//
LOCUS       DADMHM010000218         5930 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.223, whole genome shotgun sequence.
ACCESSION   DADMHM010000218 DADMHM010000000
VERSION     DADMHM010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5930)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5930)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5930
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.223"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..662
                     /locus_tag="JN125_003649"
     CDS             <1..662
                     /locus_tag="JN125_003649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="porin"
                     /protein_id="HAY8873271.1"
                     /translation="GGDSSAQTDNFMTKRASGLATYRNTDFFGVIDGLNLTLQYQGKN
                     ENRDVKKQNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQNLQSRGTGKRAEAWATG
                     LKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQFDFGLRPSLGYVLSKGK
                     DIEGIGGEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNKLNINNDDIVAIGMTYQ
                     F"
     gene            complement(701..1102)
                     /locus_tag="JN125_003650"
     CDS             complement(701..1102)
                     /locus_tag="JN125_003650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor-binding protein Crl"
                     /protein_id="HAY8873272.1"
                     /translation="MTLPSGHPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNV
                     KPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLRE
                     FHEKLRELLTTLNLKLEPADDFRDEPVKLTA"
     gene            complement(1160..2404)
                     /gene="frsA"
                     /locus_tag="JN125_003651"
     CDS             complement(1160..2404)
                     /gene="frsA"
                     /locus_tag="JN125_003651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase FrsA"
                     /protein_id="HAY8873273.1"
                     /translation="MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTI
                     PHWYRMINRLMWIWRGIDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWA
                     TQAMVWQQKACAEEDPQLSGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEA
                     AQRLPGTMRQMEFTVPGGAPITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYF
                     APRGIVMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGA
                     NVAVRLAYLESPRLKAVACLGPVVHTLLSDFKCQQQVPEMYLDVLASRLGMHDASDEA
                     LRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLITSSSADGKLLEIPFN
                     PVYRNFDKGLQEITGWIEKRLC"
     gene            complement(2496..2954)
                     /gene="gpt"
                     /locus_tag="JN125_003652"
     CDS             complement(2496..2954)
                     /gene="gpt"
                     /locus_tag="JN125_003652"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HAY8873274.1"
                     /translation="MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGA
                     LLARELGIRHVDTVCISSYDHDNQRELKVLKCAEGDGEGFIVIDDLVDTGGTAVAIRE
                     MYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPISGR"
     gene            3215..4672
                     /gene="pepD"
                     /locus_tag="JN125_003653"
     CDS             3215..4672
                     /gene="pepD"
                     /locus_tag="JN125_003653"
                     /EC_number="3.4.13.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008783788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytosol nonspecific dipeptidase"
                     /protein_id="HAY8873275.1"
                     /translation="MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKG
                     FHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDG
                     EWVKARGTTLGADNGIGMASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQSNWL
                     QADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGG
                     EIHVGLGNANKLLVRFLAGHAEELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDAL
                     KSLVNTYQEILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRN
                     SDVAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEA
                     KGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIG
                     PTITGPHSPDEQVHIESVGHYWTLLTELLKEIPAK"
     gene            complement(4729..5343)
                     /locus_tag="JN125_003654"
     CDS             complement(4729..5343)
                     /locus_tag="JN125_003654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000602105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor H"
                     /protein_id="HAY8873276.1"
                     /translation="MILLQLSSAQGPEECCLAVKKALDRLIKEAARQDVAVTVLETET
                     GRYSDTLRSALVSLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGIGRFTADE
                     QEQSDAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLL
                     IAWKLEQQQQENSAVLKSQRRMFHHQIERGNPRRTFTGMAFIEG"
     gene            complement(5340..5930)
                     /locus_tag="JN125_003655"
                     /pseudo
     CDS             complement(5340..5930)
                     /locus_tag="JN125_003655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706235.2"
                     /note="mutations in this gene result in a compromised
                     ability for drug-inducible mexXY expression; expression is
                     inducible by the same ribosome-targeting agents that
                     induce mexXY; frameshifted; incomplete; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="RNA ligase RtcB family protein"
BASE COUNT         1483 a         1567 c         1447 g         1433 t
ORIGIN      
        1 ttggtggcga ctcctcggcg cagaccgaca actttatgac caaacgcgcc agcggtctgg
       61 cgacgtatcg gaacaccgac ttcttcggcg ttatcgatgg cctgaactta accctgcaat
      121 atcaagggaa aaacgaaaac cgcgacgtta aaaagcaaaa cggcgatggc ttcggcacgt
      181 cattgacata tgactttggc ggcagcgatt tcgccattag tggggcctat accaactcag
      241 atcgcaccaa cgagcagaac ctgcaaagcc gtggcacagg caagcgtgca gaagcatggg
      301 caacaggtct gaaatacgat gccaataata tttatctggc aactttctat tctgaaactc
      361 gcaaaatgac gccaataact ggcggctttg ccaataagac acagaacttt gaagcggtcg
      421 ctcaatacca gtttgacttt ggtctgcgtc catcgctggg ttatgtctta tcgaaaggga
      481 aagatattga gggcatcggt ggtgaagatc tggttaatta tatcgacgtc ggtgctacgt
      541 attatttcaa caaaaatatg tcagcatttg ttgattataa aatcaaccaa ctggatagcg
      601 ataacaaatt gaatattaat aatgatgata ttgtcgcgat tgggatgacg tatcagtttt
      661 aatagatatt gccggatgtg atgcatccgg cacatttcac tcacgccgtt aacttcaccg
      721 gctcgtcacg aaaatcatcc gccggttcca gcttcagatt cagcgtcgtc agcagttcac
      781 gcagcttctc gtgaaactca cgcagggtgt gctccagtcg ttcaaccact tcagtatctt
      841 ttacaggaac actcttccag tcgcctgctt tatcgaacag accaaactgg tagctgtagg
      901 taaaacggga ttcctgcgct tccagctcca tccaccagcc ccagaattca cgcacttccg
      961 gtgccggttt cacgttgacg catacagcca gacaatcgaa aaagaatcga ttatcttcgc
     1021 acttaccttc acgaatatac gggcctagtg cggtaaattt tttgatcaat ctgctcttcg
     1081 ggtgtccact cggtaacgtc attgctatct cctgttgtga tgcaactgtt ttaccaaatt
     1141 ggcaaaattt agcaaatttt taacacaagc gtttttcgat ccagccggtg atttcctgaa
     1201 gacctttgtc aaaattccga tacaccgggt taaatgggat ctctaataat ttaccgtcag
     1261 cagatgatga ggtgattaag cgtgagtcct cttccgggct gaacggatcg ttcttccagt
     1321 agcctgataa cattggcgtt gggcagcgac gtcccagcaa tccttgcact tttaatgaat
     1381 agcgattcag ctccacgcgt aacgcttcgt cggaagcatc atgcatcccc aaacgactcg
     1441 ccagaacgtc aagatacatt tccggcacct gttgctggca cttaaaatca ctcaacaggg
     1501 tatgaactac cggaccaaga caggcaaccg ctttcagacg cggcgattca agatatgcca
     1561 gacgcacggc aacgttagcg ccgaaacgga aaccaaaggc cgcgacgcga gtgtgatcca
     1621 cccacggtac gttaggcagc gcctttaaga cgtgctgatg caacaggctg gagtcctggg
     1681 tgagcttcca ttttgaagaa aagcccaccg acggcatatc aatagtcagc atcacaatgc
     1741 cgcgcggcgc aaaataacgt tcatacaggc tgtaatagtc cgtctgcatc gcatccagac
     1801 caccacacat taatactgtc gggaacgggc catcgccttt cggcatatgc aaaaagccgg
     1861 tgatgggcgc accgccgggt acggtaaact ccatctgccg catcgtgccc ggcagacgct
     1921 gggcggcctc ttcataggcg cggtttgata aagcctgcgc ttgctcggcc aggtcatctc
     1981 ctttcagatg aggataggcg gcaatgttgt acaacgtagc cgcatgcagc cagtgtcgac
     2041 cactgagttg cggatcttct tccgcacagg ctttttgttg ccacaccatc gcctgggtgg
     2101 cccactcata aatccagttg ccaccacggt agccaatcac agtatcgtat aaatcatcgt
     2161 cggtacgttc agcatcgctc atcacaatac gtgcctggac gtcgaggatt tcacgtgggt
     2221 caataccgcg ccagatccac atcagacggt taatcatgcg ataccagtga gggatggttt
     2281 taccatcaag agccgactgc acaggcggtt gtgcgccgtg attaaagcgg cggactagcg
     2341 tcgaggtttc aggatgttta aagcggggtt tgaacagggt ttcgctcagg tttgcctgtg
     2401 tcatggatgc agcctccaga atacttactg gaaactattg taacctgcct gaagttaaaa
     2461 agaacaacgc ccggcagtgc caggcgttga aaagattagc gaccggagat tggcgggacg
     2521 aatacgacgc ccatatccca cggctgttcg atccaggtat cttgcggaat atcaacaaca
     2581 tagtcatcaa ccagcggacg accagccggt tttgcgaaga tggtgacaaa gtgcgctttt
     2641 ggatacattt cacgaatcgc aacagcagta ccaccggtat ccaccaggtc atcaataact
     2701 atgaagcctt cgccatcgcc ttctgcgcat ttcagcactt taagctctcg ctggttgtcg
     2761 tgatcgtagc tggaaataca aacggtatcg acatgacgaa tacccagttc acgcgccagt
     2821 aacgcacccg gtaccagacc gccacggctt acggcaataa tgcctttcca ttgttcagaa
     2881 ggcatcagtc ggcttgcgag tttacgtgca tggatctgca acatgtccca ggtgacgatg
     2941 tatttttcgc tcatgtgaag tgtcccagcc tgtttatcta cggcttaaaa agtgttcgag
     3001 gggaaaatag gttgcgcgag attatagaga tctggcgcac taaaaaccag tatttcacat
     3061 gagtccgcgt ctttttacgc actgcctctc cctgacgcgg gataaagtgg tattctcaaa
     3121 catatctcgc aagcctgtct tgtgttgaca acattttctg ctaaccctgt gacctgcaat
     3181 actgttttgc gggtgatcga caaggagact taacgtgtct gaactgtctc aattatctcc
     3241 acagccgctg tgggatattt ttgccaaaat ctgttctatt cctcacccgt cctatcatga
     3301 agagcaactc gctgaataca ttgttggttg ggcaaaagag aaaggtttcc atgtcgaacg
     3361 cgatcaggta ggtaatatcc tgattcgtaa acctgctacc gcaggtatgg aaaatcgtaa
     3421 accggtcgtc ttacaggccc acctcgatat ggtgccgcag aaaaataacg acaccgtgca
     3481 tgacttcacg aaagatccta tccagcctta tattgatggc gaatgggtta aagcgcgcgg
     3541 caccacgctg ggtgcggata acggcattgg tatggcctct gcactggcgg ttctggctga
     3601 cgaaaacgtg gttcacggtc cgctggaagt gctgctgacc atgaccgaag aagccggtat
     3661 ggacggtgct tttggcttac agagcaactg gttgcaggct gatattctga ttaacaccga
     3721 ctccgaagaa gaaggtgaaa tctacatggg ttgtgcgggg ggtatcgact tcacctccaa
     3781 cctgcattta gatcgtgaag cggttccagc tggttttgaa accttcaagt taaccttaaa
     3841 aggtctgaaa ggcggtcact ccggcggtga aatccacgtt ggcctgggta atgccaacaa
     3901 actgctggtg cgcttcctgg cgggtcatgc agaagaactg gacctgcgcc ttatcgattt
     3961 caacggcggc acactgcgta acgccatccc gcgtgaagcc tttgcgacca ttgctgtcgc
     4021 agctgataaa gtcgacgcac tgaaatctct ggtgaatacc tatcaggaga tcctgaaaaa
     4081 cgagctggca gagaaagaga aaaatctggc cttgttgctg gactctgtag cgaacgataa
     4141 agctgccctg attgcgaaat ctcgcgatac ctttattcgt ctgctgaacg ccaccccgaa
     4201 cggtgtgatc cgcaactccg atgtagccaa aggtgtggtt gaaacctccc tgaacgtcgg
     4261 tgtggtgacc atgactgaca ataacgtaga aattcactgc ctgatccgtt cactgatcga
     4321 cagcggtaaa gactacgtgg tgagcatgct ggattcgctg ggtaaactgg ctggcgcgaa
     4381 aaccgaagcg aaaggcgcat atcctggctg gcagccggac gctaattctc cggtgatgca
     4441 tctggtacgt gaaacctatc agcgcctgtt caacaagacg ccgaacatcc agattatcca
     4501 cgcgggcctg gaatgtggtc tgttcaaaaa accgtatccg gaaatggaca tggtttctat
     4561 cgggccaact atcaccggtc cacactctcc ggatgagcaa gttcacatcg aaagcgtagg
     4621 tcattactgg acactgctga ctgaactgct gaaagaaatt ccggcgaagt aattatttga
     4681 tttgctgccg gatggcgttt aatcgccttc cggcagtttc atccttcatt atccttcgat
     4741 aaaagccatc cctgtaaatg tccgtctcgg gttgccacgt tcaatctggt gatggaacat
     4801 tcgccgctgc gatttcagca ccgcgctatt ttcctgttgc tgctgctcca gcttccaggc
     4861 aatcagcaat cgtgccagcc gcttgttagc atgctgacta cgctctgact gaaccttcac
     4921 gctaataccg gatgccaaat gcgtggcgcg taccgccgag tcggttttat tgacatgttg
     4981 accgcccggc cccgacgaac gcagcgtctc ataccggatc gcatcggatt gctcctgctc
     5041 atcagcggta aaacgcccaa tgcccagaaa ccagtttttg cgcccatgat gaggccgata
     5101 cggactcgga caaatccact gaatagtgcc acaccagctt tcgcttaatg cccatgcgtt
     5161 atcgccatcc agagaaacca gagctgaacg cagcgtgtca gagtagcggc ccgtttctgt
     5221 ttccaacacc gttaccgcga cgtcttgtcg ggcagcttct ttaattagcc tgtccagcgc
     5281 ctttttcact gcgagacaac attcttccgg cccctgcgct gaggagagtt gtagcaagat
     5341 catccttttt tccctccact gtttttgagc gttagcaccg gacgcagccg cgcgacagga
     5401 ataattaaac cggcctgcac cagacattgc accacgcttt cagccgattt ataggcttgt
     5461 ggcgcttctt caaagatgag ttgtttatcg cgacaaatta tccgactgcc aagttcagtc
     5521 cgcgagagtt gcgtcaccgt gtatttcgct gccagacgcc atttacactc ggtgcgcccc
     5581 catttacgcc ctgccccatg cgccagcgag tggagcgttt tttcgttcgc aacaggctgt
     5641 acaatccagg agtaatcacc agaccgttgt catccggcgt ggcaccttta cgatgcaacc
     5701 agccctgttg atcgccgatt tgacacgcgc taacaaagtt atgcgccaca tccagaaccg
     5761 gacttcccgt ggccttaact tgttgcatta tgcgcaaagc gatcatctgg cgattaatac
     5821 acgcaaacgc cagcgcatcg tcatgttccg caatataccg tagcgcgtcg tcactgcctt
     5881 gaggcaaacc atgatgcgag aacgaggcaa tatgccgctg taaaatagac
//
LOCUS       DADMHM010000219         5921 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.224, whole genome shotgun sequence.
ACCESSION   DADMHM010000219 DADMHM010000000
VERSION     DADMHM010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5921)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5921)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5921
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.224"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            334..789
                     /locus_tag="JN125_003656"
     CDS             334..789
                     /locus_tag="JN125_003656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001462353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2726 domain-containing protein"
                     /protein_id="HAY8873277.1"
                     /translation="MVAEGILLERKEWLITRCEKMYFDNLEKWFGHYCHIHCQASLGR
                     LINFPEQPEFSEEERKRFFAIYNGMAMDYVLVSKKNNKKVCVIELDDPSHERADRIIR
                     DRWLDTIMTLARVPFVRASVTKLEEIPPVWETRDKIRPLVAATKSEPVH"
     gene            complement(880..1016)
                     /locus_tag="JN125_003657"
     ncRNA           complement(880..1016)
                     /ncRNA_class="other"
                     /locus_tag="JN125_003657"
                     /product="RtT sRNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00391"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="rtT sRNA, processed from tyrT transcript; Derived
                     by automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00391"
     gene            complement(1061..1148)
                     /locus_tag="JN125_003658"
     tRNA            complement(1061..1148)
                     /locus_tag="JN125_003658"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1112..1114),aa:Ser,seq:gga)
     gene            1382..2320
                     /gene="ghrA"
                     /locus_tag="JN125_003659"
     CDS             1382..2320
                     /gene="ghrA"
                     /locus_tag="JN125_003659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415551.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxylate/hydroxypyruvate reductase GhrA"
                     /protein_id="HAY8873278.1"
                     /translation="MDIIFYHPTFDTQWWIEALRKAIPQARVRAWKSGDNDSADYALV
                     WHPPVEMLAGRDLKAVFALGAGVDSILSKLQAHPEMLNPSVPLFRLEDTGMGEQMQEY
                     AVSQVLHWFRRFDDYRIQQNSSHWQPLPEYHWEDFTIGILGAGVLGSKVAQSLQTWRF
                     PLRCWSRTRKSWPGVQSFAGREELSAFLSQCRVLINLLPNTPETVGIINQQLLEKLPD
                     GAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFNREPLPPESPLWQHPRVTITPHV
                     AAITRPAEAVEYISRTIAQLEKGERVCGQVDRARGY"
     gene            2375..3112
                     /locus_tag="JN125_003660"
     CDS             2375..3112
                     /locus_tag="JN125_003660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase"
                     /protein_id="HAY8873279.1"
                     /translation="MYPVDLHMHTVASTHAYSTLSDYIAQAKQKGIKLFAITDHGPDM
                     EDAPHHWHFINMRIWPRVVDGVGILRGIEANIKNVDGEIDCSGKMFDSLDLIIAGFHE
                     PVFAPHDKATNTQAMIATIASGNVHIISHPGNPKYEIDVKAVAEAAAKHQVALEINNS
                     SFLHSRKGSEDNCRAVAAAVRDAGGWVALGSDSHTAFTMGEFEECLKILDAVDFPPER
                     ILNVSPRRLLNFLESRGMAPIAEFADL"
     gene            3136..3690
                     /locus_tag="JN125_003661"
     CDS             3136..3690
                     /locus_tag="JN125_003661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HAY8873280.1"
                     /translation="MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQ
                     DELLTRLQKSCDMAQVSADYNALFIGDECAVPPYRSAWVEDATEAEVRAFLSERGMPL
                     ADTPADHIGTLLLAASWLEDQSTEDESEALETLFSEYLLPWCGAFLGKVEAHATTPFW
                     RTMAPLTRDAISAMWDELEEDSEE"
     gene            3792..4283
                     /locus_tag="JN125_003662"
     CDS             3792..4283
                     /locus_tag="JN125_003662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415554.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1097 domain-containing protein"
                     /protein_id="HAY8873281.1"
                     /translation="MNILLSIAITTGILSGIWGWVAVSLGLLSWAGFLGCTAYFACPQ
                     GGLKGLAISAATLLSGVVWAMVIIYGSALAPHLEILGYVITGIVAFLMCIQAKQLLLS
                     FVPGTFIGACATFAGQGDWKLVLPSLALGLVFGYAMKNSGLWLAARSAKTAHREQEIK
                     NKA"
     gene            complement(4347..5180)
                     /gene="csgG"
                     /locus_tag="JN125_003663"
                     /pseudo
     CDS             complement(4347..5180)
                     /gene="csgG"
                     /locus_tag="JN125_003663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309441.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="curli production assembly/transport protein
                     CsgG"
     gene            complement(5207..5623)
                     /gene="csgF"
                     /locus_tag="JN125_003664"
     CDS             complement(5207..5623)
                     /gene="csgF"
                     /locus_tag="JN125_003664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="curli production assembly/transport protein
                     CsgF"
                     /protein_id="HAY8873282.1"
                     /translation="MRVKHAVVLLMLISPLSWAGTMTFQFRNPNFGGNPNNGAFLLNS
                     AQAQNSYKDPSYNDDFGIETPSALDNFTQAIQSQILGGLLSNINTGKPGRMVTNNYIV
                     DIANRDGQLQLNVTDRKTGQTSTIQVSGLQNNSTDF"
     gene            complement(5648..>5921)
                     /gene="csgE"
                     /locus_tag="JN125_003665"
     CDS             complement(5648..>5921)
                     /gene="csgE"
                     /locus_tag="JN125_003665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="curli production assembly/transport protein
                     CsgE"
                     /protein_id="HAY8873283.1"
                     /translation="GHDFYRAFSDKWESDYTGNLTINERPSARWGSWITITVNQDVIF
                     QTFLFPLKRDFEKTVVFALIQTEEALNRRQINQALLSTGDLAHDEF"
BASE COUNT         1468 a         1366 c         1488 g         1599 t
ORIGIN      
        1 atactaacta tatattgatc gttgcattgt tggcatgtaa cacgctgcag cgagtaacat
       61 tggtaatgaa atataatcaa catggatagg tgaaaattaa ttatgagctt tatggctttt
      121 gtaacttgtt tgacaattgc atttatcgcc ggttttgctg ttgccagaaa attgacactc
      181 cgaaaagttg cctcatcggt aatcatcgct aaatcgcaac ccgtcccttc atctgcaact
      241 tcccctgccg ctaaggcgtc gacaaggagc tatataccgc agaaaaccta tcgtgactct
      301 cgttggcaag agcgagatga gttatttcag ggaatggttg ccgaaggtat tttattggaa
      361 agaaaagagt ggttaatcac tcgttgtgaa aaaatgtatt tcgataatct ggaaaaatgg
      421 tttggacatt attgtcatat ccattgccag gcctctctgg ggcgcttgat caactttcca
      481 gaacaacctg agtttagcga agaagaaaga aagcgtttct ttgcaattta taatggcatg
      541 gcaatggatt atgttctggt ttcaaagaag aacaataaaa aagtctgtgt tattgagctg
      601 gatgacccga gtcatgaaag ggcggatcgc attattcgtg accgttggtt ggatacaatt
      661 atgactcttg cacgggtgcc ttttgtacga gcttctgtca ctaaattgga ggaaattcct
      721 ccggtctggg agactcgtga caagattcgc ccattagtcg cggcgacaaa gagtgaaccg
      781 gtgcattaac taagtatccc ggtcggggct tctcatcccc ccggtgtgtg caatatacga
      841 aaaaaagccc gtaccttcgt acgagctctt ctttaaagat ggcggtgagg gggggattga
      901 ctcgcttcgc tcgccctgcg ggcagcccgc tcactgcgtt cacggtctgt ccaactggct
      961 gtcgccagtt gtcgaacccc ggtcggggct tctcatcccc ccggtgtgtg caatatacga
     1021 aaaaaaagcc cgtactttcg tacgagctct tctttaaata tggcggtgag ggggggattc
     1081 gaacccccga tacgttgccg tatacacact ttccaggcgt gctccttcaa ccgctcggac
     1141 acctcaccaa attgttgttc ctgtcttgct ggaacgggcg ctaatttagg gaaatcatga
     1201 cctgaggtca acaaactttt tgaaaaaatc gcgcgtttat tcaaacttca atcaatgtgt
     1261 ggttttaata agcgaaatct gctttttttg ccaccgacca cggatttgtt atgctggtgg
     1321 cctttgtaga tcataacgat aagtgcgaat aaatttcgca caacgctttt cgggagtcag
     1381 tatggatatc atcttttatc acccaacgtt cgatacccaa tggtggattg aggcactgcg
     1441 caaagctatt cctcaggcaa gagtcagagc atggaaaagc ggagataatg actctgctga
     1501 ttatgcttta gtctggcatc ctcctgttga aatgctggca gggcgcgatc ttaaagcggt
     1561 gttcgcactc ggggccggtg ttgattctat tttgagcaag ctacaggcac accctgaaat
     1621 gctgaaccct tctgttccac tttttcgcct ggaagatact ggtatgggcg agcaaatgca
     1681 ggaatatgct gtcagtcagg tgctgcattg gtttcgacgt tttgacgatt atcgcatcca
     1741 gcaaaatagt tcgcattggc aaccgctgcc tgaatatcat tgggaagatt ttaccatcgg
     1801 cattttgggc gcaggcgtac tgggcagtaa agttgctcag agtctgcaaa cctggcgctt
     1861 tccgctgcgt tgctggagtc gaacccgtaa atcgtggcct ggcgtgcaaa gctttgccgg
     1921 acgggaagaa ctgtctgcat ttctgagcca atgtcgggta ttgattaatt tgttaccgaa
     1981 tacccctgaa accgtcggca ttattaatca acaattactc gaaaaattac cggatggcgc
     2041 gtatctcctc aacctggcgc gtggtgttca tgttgtggaa gatgacctgc tcgcggcgct
     2101 ggatagcggc aaagttaaag gcgcaatgtt ggatgttttt aatcgtgaac ccttaccgcc
     2161 tgaaagtccg ctctggcaac atccacgcgt gacgataaca ccacatgtcg ccgcgattac
     2221 ccgtcccgct gaagctgtgg agtacatttc tcgcaccatt gcccagctcg aaaaagggga
     2281 gagggtctgc gggcaagtcg accgcgcacg cggctactaa taaagcatca ggattcctgc
     2341 tatccttggc gggaattgaa tacaggagag agttatgtat cccgtcgacc ttcatatgca
     2401 taccgttgcc agcacacatg catatagcac attgagtgat tacattgccc aggccaaaca
     2461 aaagggcatt aaactttttg cgatcaccga tcatggcccg gatatggaag atgctccgca
     2521 tcactggcac ttcattaaca tgcgtatctg gccgcgagtg gttgatgggg tagggatcct
     2581 gcgcggcatc gaagctaaca ttaaaaatgt tgatggtgaa attgattgca gcggtaaaat
     2641 gtttgactcg ctggatctga ttattgccgg ttttcatgag ccggtttttg caccacatga
     2701 caaagcgacc aatacacaag cgatgatcgc cactatcgcc agcggcaatg tgcatataat
     2761 aagccatccc ggaaatccca aatatgaaat agatgtgaaa gccgttgctg aagcagccgc
     2821 gaaacatcag gtggcgctgg aaatcaataa ttcttcattt ttacactcac gtaagggcag
     2881 tgaagacaac tgtcgtgcgg tagccgcagc ggtacgtgat gctggaggtt gggtggcatt
     2941 aggctcggat tctcacaccg cgtttaccat gggggaattt gaagagtgtc ttaaaatcct
     3001 cgacgcggta gattttccgc cagagcgcat tttgaatgtt tctccgcgcc gcttactgaa
     3061 cttccttgaa tctcgcggta tggcaccgat tgcggaattt gcagaccttt aattactagt
     3121 aatggaaata tattaatgaa cgagttttct atcctctgtc gtgtgctggg ttcgctctat
     3181 taccgccaac cgcaagatcc tttactggtg ccgctgttta ccctgattcg tgaggggaaa
     3241 ctggctgcga actggccact ggagcaggat gagttactga cgcgtttaca gaaaagctgt
     3301 gatatggcgc aagtctctgc cgattacaat gcgttgttta tcggcgatga atgtgccgtg
     3361 ccgccatatc gtagcgcatg ggttgaggac gcaacggaag cggaagtgcg cgcttttctt
     3421 tccgaacgag ggatgccact ggcggatacg ccagccgatc acatcggcac attgctgctt
     3481 gcggcttcct ggctggaaga tcagtcaacg gaagatgaga gcgaagcact ggaaacactg
     3541 ttcagtgagt atctgttacc ctggtgtggt gcgttcctcg gcaaagtgga ggcccatgca
     3601 accacgcctt tctggcgcac catggcaccg ctaacccgtg atgccattag tgcaatgtgg
     3661 gacgagctgg aagaagattc tgaagagtaa atgtgatcat cgtcactcat aactgcaaca
     3721 gataatttgt tgttgcataa aatgtgtgct cgatctcatt catggccgcg ttttctgcta
     3781 tcatgcgcgg catgaacata cttctctcta ttgcaatcac aacaggcatt ctctccggta
     3841 tctggggatg ggtggctgtt tccctgggct tactaagctg ggcgggcttc ctgggctgta
     3901 cggcctactt tgcctgcccg caaggtgggc tgaaagggct ggcgatctcc gctgcaaccc
     3961 tgcttagtgg cgtggtgtgg gcgatggtca ttatttacgg tagtgcactg gcaccacatc
     4021 tggaaattct cggttatgtc ataaccggta ttgtggcgtt tctgatgtgt attcaggcca
     4081 aacagctgct gctttcattt gttccgggga cgtttatagg cgcatgcgcg acgtttgccg
     4141 ggcagggtga ctggaaactg gtgttacctt cgctggcgct tgggctggta tttggttacg
     4201 caatgaaaaa cagcggcctg tggctggcgg cgcgtagtgc aaagacggct caccgtgagc
     4261 aggaaatcaa aaataaagcg tgaggggcac tcacgctttc gcttaaacag taaaatgccg
     4321 gatgataatt cctgcttttt tatctgtcag gattccggtg gaaccgacat atggcggtat
     4381 ttcaccagaa tgtcattctg ccgttctgct ttattttgca aatcccacag accacggtcg
     4441 ataccatcat taatcaggaa aatgacccct gtttcgatag ccgacatcag acacagcata
     4501 acgggttcgt ttgaggtgta acccacttcc ccttccagca agcgctggta gtcaataaag
     4561 cggaaaaccc cggcctgaac ttcataggaa agtatcgtct tactggtgtt caccgaggag
     4621 aggatctcac cggtactcac attgacgaca cgcaggttca cggcaatctg atcgagctgg
     4681 tattgcgtgt ctgcaccgat cccaaaatat cttgccccaa caccgcccga tttaacgttg
     4741 ctttcataac cgataatcga accttcaacc ataatatttg ccgccgttaa agattgcagc
     4801 gggattcggt tattaatggc aaccgtgccg ttttcttgtg ccgcacgaat aatcttgcgc
     4861 tcgttaagca ggttttgtaa gccctagcgc tccagcggta taaaccagcg agaatctttc
     4921 aatgccgtga ccagcattgc cgtggcgctt tgcggaacag cagtggagaa gttacttgcc
     4981 gggtagggtt taaattgccc ggtttcgtcc tgaatgttgt ataccgaaac aaagatttta
     5041 cccgtcggcg ctggcagatg ggtcaaatct ttgtagctct gagcacgagg cattaatgtc
     5101 ggtctggcgg cttctttagg cggggcggtt aagcatccgc tcagtaacat gacggcaacc
     5161 aaaagaaata agcgctgcat gattattttc cttatgaagc tggggcttaa aaatcggttg
     5221 agttattttg taaacccgaa acctggatgg tcgaggtttg tccggtttta cgatctgtca
     5281 cgttcaactg caattgacca tcgcggttgg caatatcgac aatataattg ttggtcacca
     5341 tgcggcccgg tttaccggta ttaatattcg acagtagccc acctaaaatt tgtgactgga
     5401 tggcctgagt aaagttatct aacgctgagg gtgtttcaat accaaagtca tcgttatagc
     5461 tcggatcttt ataagagttt tgggcctgag cgctatttaa taaaaaagcg ccattatttg
     5521 ggttaccacc aaagtttgga ttacggaact ggaaagtcat ggttccagcc caacttaatg
     5581 gcgaaataag catgagtaga actactgcat gtttgacacg cattgcagcc tccgaacaat
     5641 tttttattta gaattcatca tgcgccaaat cgcccgtact taataacgcc tgatttatct
     5701 ggcgacgatt tagtgcttct tcagtttgaa tcagtgcaaa gacgacagtt ttctcgaagt
     5761 ctcttttcaa cggaaataaa aaagtctgga aaataacgtc ctgattgacc gttatagtga
     5821 tccagcttcc ccatcgtgca ctgggccttt cattaatcgt taagttaccc gtatagtcac
     5881 tttcccattt atcactaaag gctcggtaaa aatcatggcc a
//
LOCUS       DADMHM010000220         5820 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.225, whole genome shotgun sequence.
ACCESSION   DADMHM010000220 DADMHM010000000
VERSION     DADMHM010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5820)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5820)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5820
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.225"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(26..394)
                     /locus_tag="JN125_003666"
     CDS             complement(26..394)
                     /locus_tag="JN125_003666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873284.1"
                     /translation="MNMMRIFYIGLSGVGMMFSSMASGHDAGGLQSPACGVVCDPYIC
                     VNSDGISPELTRKYLGEKAAENLQSLQGYDPSEFTFANGVFCDVKEKLCRDDRYFGVD
                     GKRSGKINQITTKMLFMCRE"
     gene            914..1609
                     /gene="minC"
                     /locus_tag="JN125_003667"
     CDS             914..1609
                     /gene="minC"
                     /locus_tag="JN125_003667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinC"
                     /protein_id="HAY8873285.1"
                     /translation="MSNTPIELKGSSFTLSVVHLHEAEPKVIHQALEDKIAQAPAFLK
                     HAPVVLNVSALEDPVNWSAMHKAVSATGLRVIGVSGCKDAQLKAEIEKMGLPILTEGK
                     EKAPRPAPAPQAPAQNTTPVTKTRLIDTPVRSGQRIYAPQCDLIVTSHVSAGAELIAD
                     GNIHVYGMMRGRALAGASGDRETQIFCTNLMAELVSIAGEYWLSDQIPAEFYGKAARL
                     QLVENALTVQPLN"
     gene            1633..2445
                     /gene="minD"
                     /locus_tag="JN125_003668"
     CDS             1633..2445
                     /gene="minD"
                     /locus_tag="JN125_003668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020801817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinD"
                     /protein_id="HAY8873286.1"
                     /translation="MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLR
                     NLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGV
                     AKVLDDLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGIL
                     ASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVL
                     RASNQGEPVILDINADAGKAYADTVERLLGEERPFRFIEEEKKGFLKRLFGG"
     gene            2449..2715
                     /gene="minE"
                     /locus_tag="JN125_003669"
     CDS             2449..2715
                     /gene="minE"
                     /locus_tag="JN125_003669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division topological specificity factor
                     MinE"
                     /protein_id="HAY8873287.1"
                     /translation="MALLDFFLSRKKNTANIAKERLQIIVAERRRSDAEPHYLPQLRK
                     DILEVICKYVQIDPEMVTVQLEQKDGDISILELNVTLPEAEELK"
     gene            complement(3194..3313)
                     /locus_tag="JN125_003670"
     CDS             complement(3194..3313)
                     /locus_tag="JN125_003670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001131457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HAY8873288.1"
                     /translation="MPLSYAGYHHFIMMSLVSGEHNTPALSLQDESPGLVPAG"
     gene            complement(3274..3459)
                     /locus_tag="JN125_003671"
     CDS             complement(3274..3459)
                     /locus_tag="JN125_003671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873289.1"
                     /translation="MSRRYSSATITLVILFCRRPHCRKISVRQYYLKRVIFYPTTLQR
                     TAFKKCLFLMRDIIISS"
     gene            3560..3733
                     /locus_tag="JN125_003672"
     CDS             3560..3733
                     /locus_tag="JN125_003672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873290.1"
                     /translation="MSYSSFKIILIHVKNIIPIITATLILNYLNNSERSLVKQILIED
                     EIIVCATYLIPDI"
     gene            3795..4079
                     /locus_tag="JN125_003673"
     CDS             3795..4079
                     /locus_tag="JN125_003673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707069.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine zipper family protein"
                     /protein_id="HAY8873291.1"
                     /translation="MADMNRTTKGALLGAGVGLLTGNGVNGVLKGAAVGAGVGAVTEK
                     GRDGKNARKGAKVGAAVGAVTGVLTGNGLEGAIKGAVIGGTGGAILGKMK"
     gene            4083..4418
                     /locus_tag="JN125_003674"
     CDS             4083..4418
                     /locus_tag="JN125_003674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YmgD family protein"
                     /protein_id="HAY8873292.1"
                     /translation="MMMKKFALLAGLFVFAPMTWAQDYNIKNGLPSETYITCAEANEM
                     AKTDSAQVAEIVAVMGNASVASRDLKIEQSPELSAKVVEKLNQVCAKDPQMLLITAID
                     DTMRAIGKK"
     gene            complement(4475..5820)
                     /locus_tag="JN125_003675"
                     /pseudo
     CDS             complement(4475..5820)
                     /locus_tag="JN125_003675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707067.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
BASE COUNT         1600 a         1353 c         1336 g         1531 t
ORIGIN      
        1 aatagaacat aatgtaaaca aggcatcact cacgacacat aaataacatc tttgtggtga
       61 tttgattgat ttttccactc cgcttaccat ccacaccaaa ataacgatca tcacgacata
      121 atttttcttt aacatcgcaa aatacaccgt tagcgaatgt aaattcgctg ggatcgtagc
      181 cttgtaatga ttgtaagttt tcagcggctt tttcgccgag atatttcctt gttaactctg
      241 gggaaatgcc atctgagttc acacaaatat acgggtcgca aacaacgccg cacgccggag
      301 attgaagtcc gccagcgtca tgtccagacg ccattgatga gaacatcatc cccacacctg
      361 acaatccgat ataaaaaata cgcatcatat tcatagcaca tcctgataat ccaaccgtac
      421 aacacttatg ctcatttcat catcaatccg taatcaaaac cgctgacctg gacgagttac
      481 gatgacctga cagaagtatc agacgtcttc tgcggtttct atgatagagc aattctgtgg
      541 cggatattaa gataacgggt atctgttctt taatgatgct gcaaaaaatg gaaagttaag
      601 aaagcctggc gtggtgaaaa aatacacttg cctcaatact ggatatttaa acaggtctgg
      661 agatgctgtc acgattaggg tgcggaaaaa ggaagcgtaa ataagaacaa tcaaaagtac
      721 gacggcaatg ggttgattga caagggtatt ttttaagcta tgaatcagcg ccatttatca
      781 cagaatagac ttttactctg aataaatggg agggtgactt gcctcaatat aatccagact
      841 ataacatgcc ttatagtctt cggaacatca tcgcgcgctg gcgatgatta atagctaatt
      901 gagtaaggcc aggatgtcaa acactccaat cgagcttaaa ggcagtagct tcactttatc
      961 tgtggttcat ctgcatgagg cagaacctaa ggttatccat caggcgctgg aagacaaaat
     1021 cgctcaggcc cccgcatttt taaaacatgc ccccgttgta ctcaacgtca gtgcactgga
     1081 agacccggta aactggtcag cgatgcataa ggcggtgtcg gcaaccggtt tgcgggttat
     1141 tggcgtaagt ggctgcaaag atgcgcaact taaagccgaa attgaaaaga tggggctgcc
     1201 tatcctgacg gaaggaaagg aaaaagcgcc gcgtccagct cccgcaccac aggctccagc
     1261 gcaaaataca acgccggtca caaaaacgcg tttaatagat accccggtgc gttccggtca
     1321 gcgtatttat gctccacaat gtgatctgat tgttacaagc cacgttagcg ctggggccga
     1381 attgattgcc gatgggaaca ttcatgtcta tggcatgatg cgtggtcgtg cgcttgcagg
     1441 ggcaagtggt gaccgggaaa cgcaaatatt ttgtacgaac ctgatggcgg aactggtgtc
     1501 catcgcaggt gaatactggc tgagtgatca aatcccagca gaattttatg gcaaagcggc
     1561 gcgactgcag ttagtcgaaa acgctttgac cgttcaaccg ttaaattgat ccctttttaa
     1621 caaggaattt ctatggcacg cattattgtt gttacttcag gcaaaggggg tgttggtaag
     1681 acaacctcca gcgcggccat cgccactggt ttggcccaga agggaaagaa aactgtcgtg
     1741 atagattttg atatcggcct gcgtaatctc gacctgatta tgggttgtga acgccgggtc
     1801 gtttacgatt tcgtcaacgt cattcagggc gatgcaacgc taaatcaggc gttaattaaa
     1861 gataagcgta ctgaaaatct ctatattctt ccggcatcgc aaacacgcga taaagatgcc
     1921 ctcacccgtg aaggggtcgc caaagttctt gatgatctga aagcgatgga ttttgaattt
     1981 atcgtttgtg actccccggc agggattgaa accggtgcgt taatggcact ctattttgca
     2041 gacgaagcca ttattaccac caacccggaa gtctcctcag tacgcgactc tgaccgtatt
     2101 ttaggcattc tggcgtcgaa atcacgccgc gcagaaaatg gcgaagagcc tattaaagag
     2161 cacctgctgt taacgcgcta taacccaggc cgcgtaagca gaggtgacat gctgagcatg
     2221 gaagatgtgc tggagatcct gcgcatcaaa ctcgtcggcg tgatcccaga ggatcaatca
     2281 gtattgcgcg cctctaacca gggtgaaccg gtcattctcg acattaacgc cgatgcgggt
     2341 aaagcctacg cagataccgt agaacgtctg ttgggagaag aacgtccttt ccgcttcatt
     2401 gaagaagaga agaaaggctt cctcaaacgc ttgttcggag gataagttat ggcattactc
     2461 gatttctttc tctcgcggaa gaaaaacaca gccaacattg caaaagaacg gctgcagatt
     2521 attgttgctg aacgccgtcg cagcgatgca gaaccgcatt atctgccgca gttgcgtaaa
     2581 gatattcttg aggtcatttg taaatacgta caaattgatc ctgagatggt aaccgtacag
     2641 cttgagcaaa aagatggcga tatttctatt cttgagctga acgtgacctt accggaagca
     2701 gaagagctga aataagcccg ctgtaaaaac gcatttatct tcaaggcaga gtcatttctg
     2761 ccttgagttt ttcatccctc tcatccacgt tgtggtaaag cggcgagtat tcttgctgat
     2821 actcctcatt gctatttcca cctccccctt tacaccttaa ggctgttccc acgcacagaa
     2881 caaaatgttt atgcctggtt gagtaaataa cctcattgtt agtgtgtata cactggggga
     2941 tgataacccc gcaatttcat tattcattgt tctcccatag gatgaggttt cccgccgtaa
     3001 ctggcgggct ttttttgccc cagaattttc ccttttagcc ccctgtaaac gaaaactgcg
     3061 ccgaagcgca gtttaatcgt tgatggtcag aacgaccagt tcacgatata tactgcgggt
     3121 atcgactgat ttcgattcca tgccattgga taaatgatag tagcgtctaa gtgacctaag
     3181 ctctgctgca acatcagccc gcaggcacca gaccagggga ttcatcctga agagacagcg
     3241 caggtgtatt gtgttcacca ctcaccaaag acatcatgat gaaatgatga tatcccgcat
     3301 aagaaagagg cattttttaa acgcagtgcg ctgaagtgta gttggataaa aaatcactct
     3361 tttcagataa tactgtcgta cgcttatctt tcgacaatga ggccgtcggc aaaataaaat
     3421 gactaatgta atcgttgctg atgaatatct tctgctcaca taaaaatcac acaataatat
     3481 tgataaatca gattatctta cctttacaac attgcgttaa cagtcaatga cacttcttga
     3541 ataaaaatat tgccaatcaa tgagttattc ctcatttaag attattctca ttcacgtaaa
     3601 aaacataatt cctatcatca cagccacgct cattttgaat tatctgaata atagcgagcg
     3661 ttctttagtt aagcagatct taattgaaga cgaaattatt gtgtgtgcaa cttacttaat
     3721 accggacatc taagttgaag aaaaaaatac ttgccttcgg gcttatctca gcattgttct
     3781 gctccacgcc agcgatggcg gatatgaatc gcaccacgaa aggtgcattg ctaggcgcag
     3841 gcgttggttt acttactggc aatggtgtta atggcgtact gaaaggtgca gctgttggcg
     3901 ctggtgttgg tgcagtaaca gaaaaaggcc gcgacggtaa aaatgcgcgt aaaggtgcaa
     3961 aagtaggtgc cgccgttggt gctgtcactg gcgttctgac cggtaatggc ctcgaagggg
     4021 cgattaaagg tgccgtgatt ggcggtacgg gtggtgcaat tctgggtaaa atgaaataag
     4081 gaatgatgat gaaaaaattt gctttactgg cgggcctgtt tgttttcgca ccaatgacct
     4141 gggcgcagga ctacaatatt aaaaacggtt taccgtcaga aacctatatt acttgcgcag
     4201 aagccaacga aatggcaaaa actgacagcg cacaggttgc agaaattgtt gcggtaatgg
     4261 gtaatgccag cgttgccagc cgtgatttaa aaattgagca atctccggaa ctgagcgcca
     4321 aagtggtaga aaaactgaat caggtttgcg ctaaagaccc gcaaatgctg ttgatcacgg
     4381 caattgatga caccatgcgt gctatcggca aaaaataata tttcatatgt accgcgtcga
     4441 tgaatacgac gcggtttttt agctaacggc gggatcagaa cttatatttc aggcccacca
     4501 tcactgcggt gtcattgtag ccattatcac ccagctgcac gcccacattc ccccagacgc
     4561 tggccgctgg attcaggttg ccatttacgc caagtttaat ttcccccaaa ttactcgccc
     4621 catcttgttc gactttcaca ccgttcattg agacagcaaa atctttactg ttatggatcc
     4681 agttcatttc aacaaaaggt tcaaagtcgt caccgtgcgg accgctgttt ttctcctgag
     4741 tacgaataaa ggtgcggaaa ccaagtcggg tctggatgtt gttatttgcg tcattctcaa
     4801 tacgtgagcc attggcttcg gtgtgcgcat tatgatcgac gcccatccag atagcctgtg
     4861 cctgtggctg gaatatccac gtgtatttcg ccgcttccag accaaaggat ttattcaggg
     4921 caaagccgta acccgcttcc agcgagacgg ttgcgccttt cgcactatag gattcatagg
     4981 ctaattcatc ccctttcacc gagtttttaa accagctata ttgcgcccag gcgtcaatgt
     5041 atgcgccttt tttactgatg tcatcggcaa accaagtggc atacagccct gcgcaatagc
     5101 ctctgacact ccctttcgaa cgataatccg acacgctgga atgagttgag ttgtagtcgc
     5161 gggcataacc agccatcact cccaaacgct aactgtcact gtcggtaaaa ccaccggtta
     5221 acagatcggc ccctaactgc gagacgtagc gatgcgaggt cgttctcaac tgtccgttgc
     5281 tgtcacgcca ggcattatgc ccgccaattt gacgtagcca aagtcggctt gaacgctcct
     5341 gttcagttac aggatcgatg tagcgcattt cacccgcacg gtcgttcaga cgcataacaa
     5401 aaagagtgtt agcggctgcc aggttggcga cgtaacttcc agcttcgggg cgcaggacgg
     5461 gggtaggcgt ttctgttggt tctgaatttc cctctgagct gttatcctcc taattcactg
     5521 actgataact tggcaaatac cagtttttgc ctagttgttt tagttgatat tcgaaagctc
     5581 cagctgcaat ccttgcatca ccttgtctga aggcttctgc tggagattca tcgccattca
     5641 cagttatgag ttcgatcccg tttagcgtgg ccgcgccgct tcctccagca tttttcacat
     5701 agacggtagt tgaacccgaa gtattaccct caacaataag tctgtccgta gccgatttat
     5761 catcacctaa tacggtgcgg atattaagct gaccattatt accgacataa ttacctttta
//
LOCUS       DADMHM010000221         5819 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.226, whole genome shotgun sequence.
ACCESSION   DADMHM010000221 DADMHM010000000
VERSION     DADMHM010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5819)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5819)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5819
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.226"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..857
                     /gene="pdeC"
                     /locus_tag="JN125_003676"
     CDS             <1..857
                     /gene="pdeC"
                     /locus_tag="JN125_003676"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="c-di-GMP phosphodiesterase PdeC"
                     /protein_id="HAY8873293.1"
                     /translation="FALPAGILGSLVLLLLWLRIRQNYLSPKRKLQRALEKHQLCLYY
                     QPIIDIKTEKCIGAEALLRWPGEQEQVMNPAEFIPLAEKEGMIEQVTDYVIDNVFRDL
                     GDYLATHADRYVSINLSASDFHTSRLIARINQKTEQYAVRPQQIKFEVTEHAFLDVEK
                     MTPIILAFRQAGYEVAIDDFGIGYSNLHNLKSLNVDILKIDKSFVETLTTHKTSHLIA
                     EHIIELAHSLGLKTIAEGVETEEQVNWLRKRGVRYCQGWFFAKAMPPQVFMQWMEQLP
                     ARELTRGQ"
     gene            complement(860..1183)
                     /gene="soxS"
                     /locus_tag="JN125_003677"
     CDS             complement(860..1183)
                     /gene="soxS"
                     /locus_tag="JN125_003677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide response transcriptional regulator
                     SoxS"
                     /protein_id="HAY8873294.1"
                     /translation="MSHQKIIQDLIAWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRT
                     VTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTPSD
                     YRHRL"
     gene            1269..1733
                     /gene="soxR"
                     /locus_tag="JN125_003678"
     CDS             1269..1733
                     /gene="soxR"
                     /locus_tag="JN125_003678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensitive transcriptional activator SoxR"
                     /protein_id="HAY8873295.1"
                     /translation="MEKKLPRIKALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSG
                     NQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREEL
                     DRRIHTLVALRDELDGCIGCGCLSRSDCPLRNPGDRLGEEGTGARLLEDEQN"
     gene            2279..3628
                     /locus_tag="JN125_003679"
     CDS             2279..3628
                     /locus_tag="JN125_003679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HAY8873296.1"
                     /translation="MSTPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVI
                     VVPGMLGKAGFPPAAVFVATCLVAGLGSIVMGLWANLPLAIGCAISLTAFTAFSLVLG
                     QHISVPVALGAVFLMGVLFTVISATGIRSWILRNLPHGVAHGTGIGIGLFLLLIAANG
                     VGLVIKNPLDGLPVALGDFATFPVIMSLVGLAVIIGLEKLKVPGGILLTIIGISIVGL
                     IFDPNVHFSGVFGMPSLSDENGNSLIGSLDIMGALNPVVLPSVLALVMTAVFDATGTI
                     RAVAGQANLLDKDGQIIDGGKALTTDSMSSVFSGLVGAAPAAVYIESAAGTAAGGKTG
                     LTAITVGVLFLLILFLSPLSYLVPGYATAPALMYVGLLMLSNVAKIDFADFVDAMAGL
                     VTAVFIVLTCNIVTGIMIGFATLVIGRLVSGEWRKLNIGTVVIAVALVTFYAGGWAI"
     gene            3780..5429
                     /locus_tag="JN125_003680"
     CDS             3780..5429
                     /locus_tag="JN125_003680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter"
                     /protein_id="HAY8873297.1"
                     /translation="MEIFFTILIMTLVVSLSGVVTRVMPFQIPLPLMQIAIGALLAWP
                     TFGLHVEFDPELFLVLFIPPLLFADGWKTPTREFLEHGREIFGLALALVVVTVVGIGF
                     LIYWVVPGIPLIPAFALAAVLSPTDAVALSGIVGEGRIPKKIMGILQGEALMNDASGL
                     VSLKFAVAVAMGTMIFTVGGATVEFMKVAIGGILAGFVVSWLYGRSLRFLSRWGGDEP
                     ATQIVLLFLLPFASYLIAEHIGVSGILAAVAAGMTITRSGVMRRAPLAMRLRANSTWA
                     MLEFVFNGMVFLLLGLQLPGILETSLMAAEIDPNVEIWMLFTDIILIYAALMLVRFGW
                     LWTMKKFSNRFLKKKPMEFGSWTTREILIASFAGVRGAITLAGVLSIPLLLPDGNVFP
                     ARYELVFLAAGVILFSLFVGVVMLPILLQHIEVADHSQQLKEERIARAATAEVAIVAI
                     QKMEERLAADTEENIDNQLLTEVSSRVIGNLRRRADGRNDVESSVQEENLERRFRLAA
                     LRSERAELYHLRATREISNETLQKLLHDLDLLEALLIEENQ"
     gene            complement(5583..>5819)
                     /locus_tag="JN125_003681"
     CDS             complement(5583..>5819)
                     /locus_tag="JN125_003681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HAY8873298.1"
                     /translation="CMFNTRLYRVNFDEASVQGMGISILRGEENIPIDSDTLVTLQKF
                     FEEDCTSHTGMSQTEDNINAVAMKITADIMQYAD"
BASE COUNT         1258 a         1376 c         1604 g         1581 t
ORIGIN      
        1 tttttgcgtt gcccgccggt attttgggga gtcttgttct gctattactc tggctacgta
       61 ttcgacaaaa ctatttgtct cccaaacgca aattgcaacg cgctctagaa aaacatcaac
      121 tttgtcttta ttaccagcca ataatcgata tcaaaacaga aaaatgtatc ggcgctgaag
      181 cgttgttacg ttggcctggt gagcaggagc aagtaatgaa tccggcagag tttattccgc
      241 tggcagaaaa ggaggggatg atagaacagg taactgatta tgttattgat aatgtcttcc
      301 gcgatctggg cgattacctg gcaacacatg cagatcgcta tgtttctatt aacctgtcgg
      361 cctccgattt tcatacgtca cggttgatag cgcgaatcaa tcagaaaaca gagcaatacg
      421 cggtgcgtcc gcagcaaatt aaatttgaag tgactgagca tgcatttctt gatgtcgaaa
      481 aaatgacgcc gattattctg gctttccgcc aggctggtta cgaagtggca attgatgatt
      541 ttggtattgg ctactctaac ttgcataacc ttaaatcatt gaatgtcgat attttgaaaa
      601 tcgataaatc gtttgttgaa acgctgacca cccacaaaac cagtcatttg attgcggaac
      661 acatcatcga gctggcgcac agcctggggt taaaaacgat cgctgaaggc gtcgaaactg
      721 aggagcaggt taactggctg cgcaaacgcg gcgtgcgcta ttgccaggga tggttttttg
      781 cgaaggcgat gccgccgcag gtgtttatgc aatggatgga gcaattaccc gcgcgggagt
      841 taacgcgcgg gcaataaaac tacaggcggt ggcgataatc gctgggagtg cgatcaaact
      901 gccgacggaa aacgcgggag aaggtctgct gcgagacata acccaggtcc attgcgatat
      961 caaaaatcgg acgctcggtg gtgcgcaact caacggcggc cagtaacagg cgacgttggc
     1021 gaatgtaatc gccaagcgtc tgatgcgtca ccgtgcggaa cattcgttgc aagtaccact
     1081 ttgaatagcc tgattttttt gcgactacat caatgttaag cggctggtca atatgctcgt
     1141 caatccatgc gataagatcc tgaataattt tctgatggga cataaatctg cctcttttca
     1201 gtgttcagtt cgttaattca tctgttgggg agtataattc ctcaagttaa cttgaggtaa
     1261 agcgatttat ggaaaagaaa ttaccccgca ttaaagcgct gctaaccccc ggcgaagtgg
     1321 cgaaacgcag cggtgtggcg gtatcggcgc tgcatttcta tgaaagtaaa gggttgatta
     1381 ccagtatccg taacagcggc aatcagcggc gatataaacg tgatgtgttg cgatatgttg
     1441 caattatcaa aattgctcag cgtattggca ttccgctggc gaccattggt gaagcgtttg
     1501 gcgtgttgcc agaagggcat acgttaagtg cgaaagagtg gaaacagctt tcgtcccaat
     1561 ggcgagaaga gttggatcgg cgcattcata ccttagtggc gctgcgtgac gaactggacg
     1621 gatgtattgg ttgtggctgc ctttcgcgca gtgattgccc gttgcgtaac ccgggcgacc
     1681 gcttaggaga agaaggtacc ggcgcacgtt tgctggaaga tgaacaaaac taaagcgcca
     1741 caagggcgct ttagtttgtt ttccggtctt tgtctttctc tctatcccgc tggtacacag
     1801 gagggtttcc cccgacgtca acacacctca ttcgagcacg tggtggaggt tccggttggt
     1861 gttgatgctt taattgtatg tcaccgacgt ttcttcgcca gtgtaaaagt atacttttta
     1921 accgcaatat ttttgtcatc tcagacgatt ttttatcgca atcctgaacg gtatacggct
     1981 cgatagcgct gcaatcttgc gcaccgacga taacgtttgc gcatcaattg cctgtttttt
     2041 catcgtcaag acaataaaag agaaaaaagc agcaaacttc ggttgaaaaa gccgctatga
     2101 tcgccggata atcgtttgct ttttttacca cccgttttgt atgcgcggag ctaaacgttt
     2161 gcttttttgc gacgcagtaa attgtcgcaa acctggagca ggaagataac gtttcgctgg
     2221 caggggattg tccgccacgc atcttgacga aaattaaact ctcaggggat gttttcttat
     2281 gtctacgcca tcagcgcgta ccggcggttc actcgacgcc tggtttaaaa tttcacaacg
     2341 tggaagcact gtccgtcagg aagtggttgc cgggttaaca acgtttctgg cgatggtcta
     2401 ctcggtcatc gtcgttccag gtatgttggg taaagcaggc ttcccgcctg cggcagtttt
     2461 cgttgcaacc tgtctggttg ccggactcgg ttctatcgtg atgggtctgt gggctaatct
     2521 gccgttggcg attggttgcg ccatctccct gacggcgttt accgcattca gcctggtgct
     2581 ggggcaacat attagcgtac ctgtcgcgct gggtgccgtg ttcctgatgg gtgtgctgtt
     2641 tacggtaatt tctgccacgg gtatccgtag ctggattttg cgcaacttgc cgcacggtgt
     2701 ggcgcacggc acggggatcg gtatcggtct gttcctgctg ctcattgccg ctaatggtgt
     2761 tggtctggtg attaaaaacc cgcttgatgg tctgcccgtt gcgctgggtg atttcgcgac
     2821 cttcccggtg attatgtcac tggtaggtct ggcggtgatc atcggcctgg aaaaactgaa
     2881 agtccctggt ggcattctgc tgaccattat cggtatctca attgtcggtt tgatcttcga
     2941 tcctaacgtc catttctccg gcgttttcgg catgccttca ttgagcgatg aaaacggcaa
     3001 ttcactgatt ggcagcctgg acattatggg cgcgctgaat cctgtagtcc tgccaagcgt
     3061 tctggcgctg gtgatgacgg cagtatttga tgccaccgga actatccgtg ccgtcgccgg
     3121 ccaggcgaac ctgctggata aagatgggca gatcatcgac ggtgggaaag cactgaccac
     3181 tgactccatg agcagcgttt tctctggcct ggtgggtgct gctccggcag cggtatacat
     3241 cgagtctgcg gcgggtacgg cggcgggcgg taaaaccggt ttgacggcta tcaccgttgg
     3301 cgtgctgttc ctgctgattc tgttcctctc tccgctctct tacctcgttc cggggtatgc
     3361 aacggctccg gcgctgatgt acgttggcct gctgatgctg agcaacgtgg cgaaaatcga
     3421 ctttgctgat tttgttgatg cgatggcggg tctggttacg gcggtattca tcgtgctgac
     3481 ctgtaacatc gtaacaggca tcatgatcgg cttcgcgact ctggtgattg gtcgtctggt
     3541 ttccggcgaa tggcgcaagt tgaacatcgg tacggtcgtt atcgccgtgg cgctggtgac
     3601 cttctatgcg ggtggctggg ctatctaatc tttcatcgga ttctgaaaac gggtggcaat
     3661 ggctgcccgt ttttattttc tccgcacatt gtgtgagctt ttgcgatatt ctgaaaaaat
     3721 gagaattcag gcataacgcc tttctcagat cataaaaaaa catcgcaaac agggaacgca
     3781 tggaaatctt cttcaccata ctgataatga ccctcgtggt ctcgctgtcc ggggtggtca
     3841 ctcgtgtcat gccctttcag atcccgcttc cgcttatgca aatcgccatc ggtgcgctac
     3901 tggcgtggcc gacgtttggt ttgcatgtgg agtttgatcc tgaactcttt ttagtcttgt
     3961 ttatcccgcc gttgctgttc gctgatggct ggaaaacgcc gacccgtgaa tttctcgaac
     4021 atggtcgaga gattttcggc ctcgcgctgg cgctggtggt ggtcaccgtg gtcggcattg
     4081 gcttccttat ttactgggtg gtgccgggca ttccgctgat ccccgccttt gcgctggcgg
     4141 cggtactttc tccgaccgat gctgtggcgc tctccgggat tgttggcgaa gggcgcatcc
     4201 cgaaaaaaat catgggcatt ttgcagggcg aagcgttgat gaatgacgcc tccggcctgg
     4261 tgtcgttgaa gtttgccgtg gcagtggcga tggggacgat gatcttcacc gtcggcggtg
     4321 cgacggtcga atttatgaaa gtagccattg gtggtattct tgccggtttt gtggtgagct
     4381 ggctgtatgg tcgctcgctg cgattcctca gccgctgggg cggtgatgaa cccgcgacgc
     4441 agatcgttct gctgttcttg ctgccattcg cttcttatct gattgccgaa catattggcg
     4501 tttccggcat cctcgctgcg gttgccgccg ggatgaccat cacccgctcc ggtgtgatgc
     4561 gccgtgcgcc gctggcaatg cgcctgcgcg caaacagcac ctgggcgatg ctggaatttg
     4621 tctttaacgg catggtgttc ctgctgttag gtctgcagct gccgggtatt ctggagacgt
     4681 cgctgatggc ggcagaaatc gaccctaacg tcgaaatctg gatgctgttt accgatatta
     4741 ttctgatata tgcggcgctg atgctggtcc gtttcggctg gctgtggacg atgaaaaagt
     4801 tcagcaaccg cttcctgaag aagaagccga tggagtttgg ttcgtggacc acacgagaaa
     4861 tcctgatcgc gtctttcgcc ggggtgcgtg gggcgatcac tctggccggt gtgctctcta
     4921 tcccgctgct cttgccggat ggtaacgtct tcccggcgcg ctatgagctg gtgttcctgg
     4981 cggctggcgt cattctcttc tcgctgtttg tcggcgtggt gatgttgcct attctgctac
     5041 aacacattga agtcgcggat cattcgcaac aattgaaaga ggaacgtatt gcgcgagcgg
     5101 caacggcaga agtggcgatt gtggcgatcc agaaaatgga ggagcgtctg gcggcggata
     5161 ccgaagagaa tatcgataac cagctgctta cggaggtcag ttctcgcgtc attggtaacc
     5221 tgcgtcgtcg cgccgatgga cgtaacgacg ttgaaagttc cgtgcaggaa gagaaccttg
     5281 agcgtcgctt ccgtctggcg gcattgcgtt ctgaacgtgc tgaactgtac cacctgcgcg
     5341 ccacgcggga gatcagcaac gaaacgctgc aaaaattact gcacgatctc gatttgcttg
     5401 aagcgttgct aattgaggaa aatcagtaag ccgaaagcga cgtaaccagg cccgaggtaa
     5461 tctgaaaaag gtgcaatctt ttgcaccttt aacaggttag ctcgggctaa cattcatgat
     5521 tctaaaacaa ataagttatc tctcttgtaa agtcaattca ttggctgttc ttcgacttaa
     5581 cctcaatctg cgtattgcat aatatctgca gtaatcttca tagcgactgc attaatatta
     5641 tcctcagttt gtgacatgcc agtatgagag gtacaatctt cttcaaagaa tttctgtagt
     5701 gttaccaggg tatcactatc aatggggata ttttcctctc cacggagtat ggaaatgccc
     5761 attccttgga cgctagcctc atcaaaatta acccgataga gacgggtatt aaacataca
//
LOCUS       DADMHM010000222         5805 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.227, whole genome shotgun sequence.
ACCESSION   DADMHM010000222 DADMHM010000000
VERSION     DADMHM010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5805)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5805)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5805
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.227"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(214..1137)
                     /locus_tag="JN125_003682"
     CDS             complement(214..1137)
                     /locus_tag="JN125_003682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310054.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY8873299.1"
                     /translation="MEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSK
                     TLNELEQLTGTRLFERGRQGAQLTLPGEQFLTHAVRVLDAINTAGQSLHRKEGLNNDV
                     VRIGALPTAALGILPSVIGQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSD
                     PELMTGLNYELLFLESLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDAL
                     VQSQGCKIPSGCIETLSASLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGA
                     GEPIGILTRVDAMFSSGCQLMINAIRKSMPF"
     gene            1354..2697
                     /locus_tag="JN125_003683"
     CDS             1354..2697
                     /locus_tag="JN125_003683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HAY8873300.1"
                     /translation="MANSITADEIREQFSQAMSAMYQQEVPQYGTLLELVADVNLAVL
                     ENNPQLHEKMVNADELARLNVERHGAIRVGTAQELATLRRMFAIMGMYPVSYYDLSQA
                     GVPVHSTAFRPIDDASLARNPFRVFTSLLRLELIENEILRQKAAEILRQRDIFTPRCR
                     QLLEEYEQQGGFNETQAQEFVQEALETFRWHQSATVDEETYRALHNEHRLIADVVCFP
                     GCHINHLTPRTLDIDRVQSMMPECGIEPKILIEGPPRREVPILLRQTSFKALEETVLF
                     AGQKQGTHTARFGEIEQRGVALTPKGRQLYDDLLRNAGTGQDNLTHQMHLQETFRTFP
                     DSEFLMRQQGLAWFRYRLTPSGEAHRQAIHLGDDPQPLIERGWVVAQPITYEDFLPVS
                     AAGIFQSNLGNETQTRSHGNASREAFEQALGCPVLDEFQLYQEAEERSKRRCGLL"
     gene            2922..4577
                     /locus_tag="JN125_003684"
     CDS             2922..4577
                     /locus_tag="JN125_003684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucan biosynthesis protein"
                     /protein_id="HAY8873301.1"
                     /translation="MDRRRFIKGSMAMAAVCGTSGIASLFSQAAFAADSDIADGQTQR
                     FDFSILQSMAHDLAQTAWRGAPRPLPDTLATMTPQAYNSIQYDAEKSLWHNVENRQLD
                     AQFFHMGMGFRRRVRMFSVDPATHLAREIHFRPELFKYNDAGVDTKQLEGQSDLGFAG
                     FRVFKAPELARRDVVSFLGASYFRAVDDTYQYGLSARGLAIDTYTDSKEEFPDFTAFW
                     FDTVKPGATTFTVYALLDSASITGAYKFTIHCEKSQVIMDVENHLYARKDIKQLGIAP
                     MTSMFSCGTNERRMCDTIHPQIHDSDRLSMWRGNGEWICRPLNNPQKLQFNAYTDNNP
                     KGFGLLQLDRDFSHYQDIMGWYNKRPSLWLEPRNKWGKGTIGLMEIPTTGETLDNIVC
                     FWQPEKAVKAGDEFAFQYRLYWSAQPPVHCPLARVMATRTGMGGFPEGWAPGEHYPEK
                     WARRFAVDFVGGDLKAAAPKGIEPVITLSSGEAKQIEILYIEPIDGYRIQFDWYPTSD
                     STDPVDMRMYLRCQGDAISETWLYQYFPPASDKRQYVDDRVMS"
     gene            4717..4941
                     /locus_tag="JN125_003685"
     CDS             4717..4941
                     /locus_tag="JN125_003685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415943.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HAY8873302.1"
                     /translation="MFPEYRDLISRLKNENPRFMSLFDKHNKLDHEIARKEGFDGRGY
                     NAEVVRMKKQKLQLKDEMLKILQQESVKGV"
     gene            5004..5540
                     /gene="rimL"
                     /locus_tag="JN125_003686"
     CDS             5004..5540
                     /gene="rimL"
                     /locus_tag="JN125_003686"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707645.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12-serine
                     acetyltransferase"
                     /protein_id="HAY8873303.1"
                     /translation="MTETIKVSESLELHAVAESHVTPLYQLICKNKTWLQQSLNWPQF
                     VQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVISFNRIEPLNKTAEIGYWLDE
                     SHQGQGIISQALQALIHHYAQSGELRRFVIKCRVDNPQSNQVALRNGFILEGCLKQAE
                     FLNDAYDDVNLYARIIDS"
     gene            complement(5535..>5805)
                     /locus_tag="JN125_003687"
     CDS             complement(5535..>5805)
                     /locus_tag="JN125_003687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transferase"
                     /protein_id="HAY8873304.1"
                     /translation="AIVEGNCVLKHHVLIGGNAVVRGEPILLDEHVVIQGESRISGAV
                     IIENHVELTDHAVVEAFDGDTVHVRGPKVINGEERITRTPLAGLL"
BASE COUNT         1495 a         1382 c         1478 g         1450 t
ORIGIN      
        1 ataaggtgac gcaacagaat gcttctctgg tagaagaggc ctcagcggcg gcggtgtccc
       61 ttgaagaaca ggcggcacga ttaactgagg cggtggatgt attccgtctg aacaaacatt
      121 ctgtgtcggc agaacctcgc ggagcgggtg aaccagttag tttcgctacg gtgtgaaaat
      181 gttcaaggag ggatcgacag atcccttcac ctttcagaac ggcattgatt ttcgaatagc
      241 gttaatcatc aactggcaac cagaagagaa catcgcatct acgcgggtca gtattccaat
      301 cggttcgcct gcaccatgtc ccggaacagg cagggccacc agcgtggcat gacgcaggtc
      361 gtcttttacc gcgccagaag ggacaaacca cacgtagtcg tattcaaccg taagttgacg
      421 agatagcgaa gcagacagcg tttcgataca acccgaagga attttacatc cctggctctg
      481 tactaatgca tctgaatgct ggcgtggcgc agtgccttct ggtgatacaa cgaccggcca
      541 ttccagcact cggcttagcg ttacgttctc ctgaagtagc gggtgattag ggcggacaac
      601 cagcttcagc gattcaagaa acagcagttc gtaattaagc ccggtcatca gttcaggatc
      661 tgacatccga ccaatgccga tatcgatttc cccggttttc aaacccgcca gaatcatagg
      721 gttactcatt gtcgcaactt gcaaggtcgt ctctttttgt tgctgatgaa actgacctat
      781 aaccgaaggt aatatcccca gtgccgcagt aggtagtgca ccaatcctga cgacatcatt
      841 attaagacct tctttacgat gaagcgactg tccggcagtg ttgatggcgt caagaactct
      901 gactgcatgc gttaaaaatt gttcgccggg taaggtaagt tgcgccccct gacgaccacg
      961 ctcaaacaag cgagtgcccg tcagctgctc cagttcattc aatgtcttag agagcgcagg
     1021 ttgactcaaa ttaagggttt cagccgcgcg ccccaaagtt ccttgttgtg cgacagctac
     1081 gaatgtatga aggtggcgca aacggatgcg ctgactaaac agactatttt tttccataag
     1141 cgatgttaaa aacgaagcgg tgtcgctgac aagtgaagtt gtttgattat gataacttga
     1201 ttgcaaaata taattaacaa ttaaagcaat tgtgttacag caaaatggat aatattgatg
     1261 ttttcgcggc gagatcacag tttgtaaatt cttcccgcca gagtgaatgc ggttacctac
     1321 actccagatt actgaccact ggaggcagac actatggcga acagcatcac ggcggatgag
     1381 attcgggaac agttttcgca ggcaatgtca gccatgtacc agcaagaagt tccgcagtac
     1441 ggcacgctgc tggaactggt agctgatgtg aatctggctg tgctggaaaa caatcctcaa
     1501 ctgcacgaaa aaatggtaaa tgcagacgag ctggcgcgac tgaatgttga acgtcatggg
     1561 gcgattcgcg ttgggactgc acaagagctt gctactcttc ggcggatgtt tgccattatg
     1621 gggatgtacc cggtgagcta ttacgatctc tcgcaggcag gggtgccggt acattcgaca
     1681 gcatttcggc ccattgatga tgcttctctg gcgcgtaatc ccttccgcgt ttttacctcc
     1741 ttactccgcc ttgagcttat cgagaacgaa attttgcgcc agaaagcggc ggagattctg
     1801 cgtcagcgcg atatcttcac cccacgttgt cgacaactgt tagaggaata tgagcagcag
     1861 ggcggtttta acgaaacaca ggcacaggaa tttgtgcaag aggccctgga aacgtttcgc
     1921 tggcaccagt cagcaacggt agatgaagaa acctatcgcg ccttgcacaa cgaacatcgg
     1981 ttgattgctg atgtggtctg ttttcctgga tgccatatca accacctgac gccacgtacg
     2041 ctggatattg accgggtgca gtcgatgatg cctgaatgcg gaattgaacc caaaattctc
     2101 atcgaggggc cgccgcgccg cgaggtaccg attttactac gccagaccag ctttaaagca
     2161 ctggaagaga cggtgttgtt tgcggggcag aaacagggca cgcataccgc gcgctttggt
     2221 gaaattgagc agcgtggcgt ggcattaacg ccgaaagggc gacaactgta tgatgatctt
     2281 ctgcgtaacg ctggaaccgg gcaggataat ctcactcacc aaatgcattt acaggaaacc
     2341 ttccgcactt ttcctgacag tgagttttta atgcgtcagc aagggttggc atggttccgg
     2401 taccgtctga cgccttcggg tgaggcgcat cgtcaggcga ttcatcttgg agacgatcca
     2461 cagcctttaa ttgaacgtgg ttgggtagtg gcgcaaccca tcacctatga agatttcttg
     2521 cccgttagcg cggcggggat cttccagtca aatctgggta atgaaacgca gacacgcagt
     2581 cacggtaatg ccagtcgcga agcatttgag caggcgttgg gttgtccggt tttggatgag
     2641 ttccagcttt accaggaagc ggaagaacgc agtaaacgtc gctgtggttt gctttaaatt
     2701 ctgaccatcc gcctttgcaa aaatttgcct gattttacaa acgaatcagg ctcatcccat
     2761 cgacataaaa aaaatgccga tttatgcata ttctctcagt tcaacaattg gattattaat
     2821 aaatattgtc tagagtgagc ggtcataaat aagcactttc ttgccgctga aaacgaccag
     2881 cgcgggacca ttcacaacac cagaaggact cactttcagg tatggatcgt agacgattta
     2941 ttaaaggttc aatggctatg gccgccgtgt gcggtaccag cggcattgct tctctttttt
     3001 ctcaggcggc attcgcggca gattctgata ttgccgacgg gcaaacccag cgttttgact
     3061 tctccattct acagtcaatg gcgcacgact tagcgcaaac agcgtggcgt ggtgcgcctc
     3121 gtccgttacc tgacacgctg gcgacaatga cgccgcaggc ttataacagt attcaatacg
     3181 acgccgaaaa atcgctctgg cataacgttg agaaccgtca actggacgct cagttcttcc
     3241 atatgggaat gggattccgt cgccgcgttc gtatgttttc tgtagatcca gcaacacatc
     3301 tggcgcgtga aattcacttt cgcccggagt tgttcaaata caacgatgcg ggtgttgata
     3361 caaaacaatt agaagggcaa agcgatctcg gctttgccgg ttttcgcgtg tttaaagccc
     3421 ccgaactggc gcgccgtgat gtagtatcat ttctcggcgc gagttatttc cgcgccgttg
     3481 atgatacata tcaatacggt ttgtcggccc gcggcctggc gatcgacact tacaccgaca
     3541 gtaaagaaga gttccccgac tttaccgcct tctggtttga tacggtaaaa ccgggggcaa
     3601 ctacctttac cgtttatgcg ttgctcgata gcgccagcat tactggtgcc tataagttca
     3661 ctatccattg tgagaaaagt caggtgatta tggatgtgga aaatcacctg tatgcgcgca
     3721 aagacattaa acagctgggc attgcgccga tgaccagtat gttcagctgc ggtactaatg
     3781 aacgtcggat gtgcgataca attcatccgc aaattcatga ctctgatcgt ctgtccatgt
     3841 ggcggggcaa cggcgagtgg atttgccgtc cgctgaataa tccgcaaaaa ttgcagttca
     3901 atgcttacac cgacaacaac ccgaaagggt ttggtttatt gcaactggat cgtgacttct
     3961 cccattatca ggacattatg ggctggtata acaaacgccc aagtctgtgg ctggaaccgc
     4021 gtaacaagtg gggtaagggc accatcggcc tgatggaaat cccaacaacg ggcgaaacgc
     4081 tggataacat tgtctgtttc tggcagccag aaaaagctgt aaaagcaggt gatgagtttg
     4141 cattccagta tcgtctgtac tggagtgcgc aaccgcctgt tcattgccca ttagcgcgcg
     4201 ttatggcgac gcgtaccggc atgggcggtt tcccggaagg ttgggcgcca ggtgaacact
     4261 atcccgaaaa atgggcgcgt cgttttgccg tcgatttcgt tggtggtgat ctgaaagctg
     4321 ccgcgccaaa aggcattgag ccggtgatta cgctttccag tggggaagcg aagcaaatcg
     4381 aaattctcta tattgaaccc atcgatggtt atcgtattca gtttgactgg tatccgactt
     4441 cggactccac tgatccggtc gatatgcgga tgtatctacg ttgtcagggg gacgctatca
     4501 gtgaaacatg gctgtatcag tatttcccgc cagcgtcgga taaacgtcag tatgttgacg
     4561 accgcgtgat gagttaatcg ttttttcttc ggcaccttct tcgggaggtg ccgtctggtt
     4621 aaacacgatc ccgctcgcat ttttccctaa gttaaatgag taatctgatg gtgtgtattt
     4681 cagatacacc ttgtcagcca ctaacaggga gtgcgtatgt ttccagaata ccgagattta
     4741 atatcccgtc tgaaaaacga aaatcctcgc tttatgtcct tgttcgataa acacaataaa
     4801 cttgatcatg aaattgccag aaaggaaggt ttcgacggtc gagggtacaa tgcggaagtg
     4861 gtccgcatga aaaaacaaaa gctacagtta aaagatgaga tgctcaaaat cctgcagcag
     4921 gagagcgtca aaggggtgta aactttccta agccgccagc caggcggctt ttttaacaac
     4981 agcatggatt gactggagat aagatgactg aaacgataaa agtaagcgaa tcacttgaat
     5041 tacatgctgt tgcggaaagt cacgtcacac ctctttatca gttaatctgt aaaaataaaa
     5101 cctggttaca gcagtcgcta aactggccgc agttcgttca gagtgaagag gacacgcgaa
     5161 aaacggtgca gggtaatgtg atgttgcatc aacgcggcta tgccaaaatg ttcatgattt
     5221 tcaaagaaga tgaacttatc ggcgttatct cgtttaatcg tattgaacca ctgaataaaa
     5281 ctgctgaaat cggctactgg ctggacgaat ctcatcaggg gcaggggatc atttctcagg
     5341 cgctgcaggc attgattcat cattacgctc agtctggtga acttagacgc ttcgtgatca
     5401 aatgtcgggt ggacaatccg caaagcaacc aggtcgcttt gcgcaatggt tttatccttg
     5461 aaggttgcct gaaacaggct gagttcctga atgatgccta tgatgatgtg aacttatacg
     5521 cgcgtattat cgattcataa taaccctgcc agcggcgttc gcgtaatgcg ctcctcgccg
     5581 ttaatgactt ttggaccacg gacatgaacc gtgtcgccat caaaggcttc aacgacggcg
     5641 tggtcggtta actccacatg gttttcaatt atcaccgcac ctgaaatacg gctctcacct
     5701 tgtattacaa cgtgctcgtc gagcagaatc ggttcaccac gtaccacggc atttccgcca
     5761 atcaagacat gatgttttaa cacacaatta ccttccacaa tggca
//
LOCUS       DADMHM010000223         5772 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.228, whole genome shotgun sequence.
ACCESSION   DADMHM010000223 DADMHM010000000
VERSION     DADMHM010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5772)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5772)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5772
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.228"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..340
                     /locus_tag="JN125_003688"
     CDS             <1..340
                     /locus_tag="JN125_003688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001533668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF4049 domain-containing protein"
                     /protein_id="HAY8873305.1"
                     /translation="PVELAEIINKKHHAVINGKKFKNSRAISCRSFNRYFSVSTDYRP
                     KLEALLACSQMLGINQVVAHNGNGGRECIGETGTVLGLNARDSKHAGRMFSMHNCQIN
                     PGAGPEITTP"
     gene            781..1848
                     /locus_tag="JN125_003689"
     CDS             781..1848
                     /locus_tag="JN125_003689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HAY8873306.1"
                     /translation="MDKSKRHLAWWVVGALAVAAVVAWWLLRPAGVPEGFAVSNGRIE
                     ATEVDIASKIAGRIDTILVKEGQFVREGEVLAKMDTRVLQEQRLEAIAQIKEAQSAVA
                     AAQALLEQRQSETRAAQSLVNQRQAELDSVAKRHMRSRSLAQRGAISAQQLDDDRAAA
                     ESARAALESAKAQVSASKAAIEAAHTNIIQAQTRVEAAQATERRIAADIDDSELKAPR
                     DGRVQYRVAEPGEVLAAGGRVLNMVDLSDVYMTFFLPTEQAGTLKLGGEARLILDAAP
                     DLRIPATISFVASVAQFTPKTVETSDERLKLMFRVKARIPPELLQQHLEYVKTGLPGV
                     AWVRVNEELPWPDDLVVRLPQ"
     gene            1845..4580
                     /gene="rbbA"
                     /locus_tag="JN125_003690"
     CDS             1845..4580
                     /gene="rbbA"
                     /locus_tag="JN125_003690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated ATPase/putative transporter
                     RbbA"
                     /protein_id="HAY8873307.1"
                     /translation="MTHLELVPVPPVAQLAGVSQHYGKTVALNNITLDIPARCMVGLI
                     GPDGVGKSSLLSLISSARVIEQGNVMVLGGDMRDPKHRRDVCPRIAWMPQGLGKNLYH
                     TLSVYENVDFFARLFGHDKAEREVRINELLTSTGLAPFRDRPAGKLSGGMKQKLGLCC
                     ALIHDPELLILDEPTTGVDPLSRAQFWDLIDSIRQRQSNMSVLVATAYMEEAERFDWL
                     VAMNAGEVLATGSAEELRQQTQSATLEEAFINLLPQAQRQAHQAVVIPPYQPENAEIA
                     IEARDLTMRFGSFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAW
                     LFGQPVDPKDIDTRRRVGYMSQAFSLYNELTVRQNLELHARLFHIPEAEIPARVAEMS
                     ERFKLNDVEDVLPESLPLGIRQRLSLAVAVIHRPEMLILDEPTSGVDPVARDMFWQLM
                     VDLSRQDKVTIFISTHFMNEAERCDRISLMHAGKVLASGTPQELVEKRGAASLEEAFI
                     AYLQEAAGQSNEAEAPPVVHDTTHAPRQGFSLRRLFSYSRREALELRRDPVRSTLALM
                     GTVILMLVMGYGISMDVENLRFAVLDRDQTVSSQAWTLNLSGSRYFIEQPPLTSYDEL
                     DRRMRAGDITVAIEIPPNFGRDIARGTPVELGVWIDGAMPSRAETVKGYVQAMHQSWL
                     QDVASRQSTPASQSGLMNIETRYRYNPDVKSLPAIVPAVIPLLLMMIPSMLSTLSVVR
                     EKELGSIINLYVTPTTRSEFLLGKQLPYIALGMLNFFLLCGLSVFVFGVPHKGSFLTL
                     TLAALLYIIIATGMGLLISTFMKSQIAAIFGTAIITLIPATQFSGMIDPVASLEGPGR
                     WIGEVYPTSHFLTIARGTFSKALDLTDLWQLFIPLLIAIPLVMGLSILLLKKQEG"
     gene            4580..5704
                     /locus_tag="JN125_003691"
     CDS             4580..5704
                     /locus_tag="JN125_003691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709253.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-2 transporter permease"
                     /protein_id="HAY8873308.1"
                     /translation="MRHLRNIFNLGIKELRSLLGDKAMLTLIVFSFTVSVYSSATVTP
                     GSLNLAPIAIADMDQSQLSNRIVNSFYRPWFLPPEMITADEMDAGLDAGRYTFAINIP
                     PNFQRDVLAGRQPDIQVNVDATRMSQAFTGNGYIQNIINGEVNSFVARYRDNSEPLVS
                     LETRMRFNPNLDPAWFGGVMAIINNITMLAIVLTGSALIREREHGTVEHLLVMPITPF
                     EIMMAKIWSMGLVVLVVSGLSLVLMVKGVLGVPIEGSIPLFMLGVALSLFATTSIGIF
                     MGTIARSMPQLGLLVILVLLPLQMLSGGSTPRESMPQMVQDIMLTMPTTHFVSLAQAI
                     LYRGAGFEIVWPQFLTLMAIGGAFFTIALLRFRKTIGTMA"
BASE COUNT         1290 a         1480 c         1675 g         1327 t
ORIGIN      
        1 tccggtcgaa ttagcggaaa ttattaataa aaagcaccat gctgtaatta atggcaaaaa
       61 gtttaaaaat agccgggcta tctcttgtcg atcctttaat cgttattttt ctgtttcgac
      121 agattacaga cctaaacttg aagcactatt agcatgctca caaatgttag gtataaatca
      181 agttgttgca cataacggta atggtggaag agaatgtata ggtgaaacgg ggacagtttt
      241 aggtcttaac gcccgtgaca gtaaacatgc tggaagaatg ttcagcatgc ataattgcca
      301 aattaaccct ggtgcagggc ctgagataac cactccctag aagtcttacc agcatgaaaa
      361 aaacagaaat ggatttatgc ctttgattag aaggcgcaca atgttacagc tctgaaccat
      421 agacaacatg aatattaatg ttactatctg gttgagactg ttgataaaac gtaaaaagga
      481 atgctctgtt cctgcaactg aacaggcgtg aaacgcgatc caacaggatg gataccgttt
      541 tgtcagccag ttttatagat cacacttatg agtatgcgtg tttcatttac ggccaggaat
      601 gctgatgatg acaacattac tacccgtttt cactaagcct tccccgttgg cgctcaatgc
      661 tctgcgcgct ggtcgtattt gtcgtttcct tcttatcccg gatggaagaa tccgctgaac
      721 gtcgttcggc ggcagttgta acacgcgtcg tttgcttaca gggattatgg cgggccgatt
      781 atggataaga gtaagcgcca tctggcgtgg tgggttgtcg gggcactggc ggtggctgcc
      841 gtcgtggcgt ggtggctgtt gcgcccggcg ggtgtgccgg aaggctttgc tgtcagcaat
      901 gggcgcattg aagcgacgga agtggatatc gccagcaaaa ttgccgggcg tatcgacacc
      961 attctggtga aagaaggcca gtttgttcgc gaaggtgaag tgctggcgaa gatggatact
     1021 cgcgtgttgc aggaacagcg actggaagcc atcgcgcaaa tcaaagaggc acaaagcgcc
     1081 gttgccgccg cgcaggcttt gctggagcaa cgacaaagcg aaactcgcgc cgcgcagtcg
     1141 ctggttaatc aacgccaggc agaactggac tccgtagcaa aacgtcatat gcgttcccgt
     1201 tcactggccc aacgaggggc tatttctgcg caacagctgg atgacgaccg cgccgccgct
     1261 gagagcgccc gagctgcgct ggaatcggca aaagctcagg tttctgcttc taaagccgct
     1321 atagaggcgg cacataccaa tatcattcag gcgcaaaccc gcgtcgaagc ggcacaagcc
     1381 actgaacggc gcattgccgc agatatcgat gacagcgaac tgaaagcccc gcgtgacgga
     1441 cgcgtgcagt atcgggttgc cgagccaggg gaagtgctgg cggcaggcgg tcgggtgctg
     1501 aatatggtcg atctcagcga cgtctatatg actttcttcc tgccaaccga acaggcgggc
     1561 acgctaaaac tgggcggtga agcacggctg atcctcgatg ccgcgccaga tctgcgtatt
     1621 ccggcgacca tcagttttgt cgccagcgtc gcccagttca cgccaaaaac cgtcgaaacc
     1681 agcgatgaac ggctgaaact gatgttccgc gtcaaagcgc gtatcccacc ggaattactc
     1741 cagcagcatc tggaatatgt caaaacgggc ttgccgggcg tagcatgggt gcgggtgaat
     1801 gaagaacttc cgtggcctga cgacctggtg gtgaggttgc cgcaatgacg catctggaac
     1861 tggttcccgt cccgcctgtc gcgcaactgg cgggcgtgag ccagcattat ggaaaaaccg
     1921 ttgcgctgaa caatatcact ctcgatattc cggcccgctg tatggtcggg ctgattggcc
     1981 cggacggcgt cgggaagtcg agtttgttgt cgttgatttc cagtgctcgt gtcattgagc
     2041 agggcaatgt gatggtgctg ggcggcgata tgcgcgaccc gaagcatcgc cgcgacgtct
     2101 gcccgcgcat cgcctggatg ccgcaggggc tgggcaaaaa cctctaccac accttgtcgg
     2161 tgtatgaaaa cgtcgatttt ttcgcccgcc tgttcggtca cgacaaagcg gagcgggaag
     2221 tgcgaattaa tgagctgctg accagcacgg ggttagcacc gtttcgcgat cgtccggcag
     2281 ggaaactctc cggcgggatg aagcaaaaac ttgggctgtg ctgcgcgtta atccacgacc
     2341 cggaactgtt gatccttgat gagccaacaa cgggggttga cccgctctcc cgcgcccagt
     2401 tctgggatct gatcgacagt attcgccagc ggcagagcaa tatgagcgtg ctggtcgcca
     2461 ccgcctatat ggaagaggcc gaacgcttcg actggctggt agcgatgaat gccggagaag
     2521 tgctggcaac cggcagcgcc gaagagctgc ggcagcaaac gcaaagcgcc acgctggaag
     2581 aagcatttat taatctgtta ccgcaagcgc aacgccaggc gcatcaggcg gtagtgatcc
     2641 caccgtatca acctgaaaac gcagagattg ccatcgaagc gcgcgatctg accatgcgtt
     2701 ttggttcctt cgttgccgtt gatcacgtca atttccgcat tccacgcggg gagatttttg
     2761 gattccttgg ttcgaacggc tgcggtaaat ccaccaccat gaaaatgctt accggactgc
     2821 tgcccgccag cgaaggtgag gcgtggctat ttgggcaacc ggttgatcca aaagatatcg
     2881 atacccgccg tcgtgtgggc tatatgtcgc aggcgttttc gctctataac gaactcaccg
     2941 tgcggcaaaa cctggagtta catgcccgtt tgtttcacat cccggaagcg gaaattcccg
     3001 cgcgagtggc tgaaatgagc gagcgtttta agctcaacga cgttgaagat gttctgccgg
     3061 agtcattgcc gctcggcatt cgccagcggc tttcgctggc ggtggcggtg attcatcgcc
     3121 cggagatgtt aatcctcgat gagcctactt ctggtgtcga tccggtggcg agggatatgt
     3181 tctggcagtt gatggtcgat ctctcgcgcc aggacaaagt gactatcttc atctccaccc
     3241 actttatgaa cgaagcggaa cgttgcgacc gcatctcact gatgcacgcc ggaaaagtgc
     3301 ttgccagcgg tacaccgcag gaactggttg agaaacgcgg agccgccagt ctggaagagg
     3361 catttatcgc ctatttgcag gaagcggcag ggcagagcaa cgaagccgaa gcgccgcccg
     3421 tggtacacga caccacccac gcgccgcgtc agggatttag cctgcgccgt ctgtttagct
     3481 acagccgccg cgaagcgctg gaactgcgac gcgatccagt acgttcgacg ctggcgctga
     3541 tgggaacggt gatcctgatg ctggtaatgg gttacggcat cagtatggat gtggaaaacc
     3601 tgcgctttgc ggtgctcgac cgcgaccaga ccgtcagtag ccaggcgtgg acactcaacc
     3661 tctccggttc ccgttacttt atcgaacagc cgccgctcac cagttatgac gagcttgatc
     3721 gtcggatgcg tgcgggcgat atcacggtgg cgattgagat cccgcccaat ttcgggcgcg
     3781 atatcgcgcg tggtacgcct gtggaactcg gcgtctggat cgacggagcg atgcccagtc
     3841 gtgccgaaac ggtaaaaggt tacgtgcagg caatgcacca gagttggctt caggatgtgg
     3901 cgagccgaca atcgacaccc gccagccaaa gcgggctgat gaacattgag acgcgttatc
     3961 gctataaccc ggacgtaaaa agcctgccag caattgttcc ggcggtgatc ccgcttctgc
     4021 tgatgatgat cccgtcaatg ctaagcaccc ttagcgtggt gcgggaaaaa gagcttgggt
     4081 cgattatcaa cctttacgtg acccccacca cgcgtagtga atttttgctt ggtaaacagt
     4141 tgccatacat cgcgctgggg atgctgaact ttttcctgct ctgcggcctg tcggtgtttg
     4201 tgtttggcgt accgcataaa ggcagtttcc tgacgctcac cctggcggcg ctgctgtata
     4261 tcatcattgc caccggaatg gggctgctga tctccacctt tatgaaaagc cagattgccg
     4321 ccattttcgg aacggcgatt atcacgttga tcccggcgac acagttttcc gggatgatcg
     4381 atccggtagc ttcgctggaa gggcctggac gttggatcgg cgaggtttac ccgaccagtc
     4441 attttctgac tatcgcccgc gggacgttct cgaaagcgct ggatctgact gatttgtggc
     4501 aactttttat cccgttgctg atagccatcc cgctggtgat gggcttaagt atcctgctgc
     4561 tgaaaaaaca ggagggatga tgcgccattt acgcaatatt tttaatctgg gtatcaaaga
     4621 gttgcgcagt ctgctcggtg ataaagcgat gctgacgctg attgtcttct cgtttacggt
     4681 gtcggtgtat tcgtcagcga ccgttacgcc aggatcgttg aacctcgcgc cgatcgccat
     4741 tgccgatatg gatcaatcgc agttatcgaa ccggatcgtt aacagcttct atcgtccgtg
     4801 gtttttgcca ccggagatga tcaccgccga tgagatggat gccggactgg acgccggacg
     4861 ctataccttc gcgataaata ttccgcctaa ttttcagcgt gatgtcctcg ccggacgcca
     4921 gccggatatt caggtgaacg tcgatgccac gcgcatgagc caggcattta ccggcaatgg
     4981 gtatatccag aatattatca acggtgaagt gaacagcttt gtcgcgcgct accgtgataa
     5041 cagcgaaccg ttggtatcgc tggaaacccg gatgcgcttt aacccgaacc ttgatcccgc
     5101 gtggtttggc ggggtgatgg cgatcatcaa caacattacc atgctggcga ttgtattgac
     5161 cggatcggcg ctgatccgcg agcgtgaaca cggcacggtg gaacacttac tggtgatgcc
     5221 gataacgccg tttgagatca tgatggcgaa gatctggtcg atggggctgg tggtgctggt
     5281 ggtatcggga ttatcgctgg tgctgatggt gaaaggtgta ctgggcgtac cgattgaagg
     5341 ctcgatcccg ctgtttatgc tgggcgtggc gctcagtctg tttgccacca cgtcaatcgg
     5401 catttttatg gggacgatag cgcgttcaat gccgcaactg gggctgctgg tgattctggt
     5461 gctgctgccg ctgcaaatgc tttccggtgg atccacgccg cgcgaaagta tgccgcagat
     5521 ggtgcaggac attatgctga ccatgccgac gacacacttt gttagcctcg cgcaggccat
     5581 tctctaccgg ggtgccggat tcgaaatcgt ctggccgcag ttcctgacgc tgatggcaat
     5641 tggcggcgcg tttttcacca ttgcgctgct gcgattcagg aagacgattg ggacaatggc
     5701 gtaaggaagg gaaacttgac ttcatactgt gatgtcatac tattgatgtc ataaagtgaa
     5761 gtcataagga ca
//
LOCUS       DADMHM010000224         5755 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.229, whole genome shotgun sequence.
ACCESSION   DADMHM010000224 DADMHM010000000
VERSION     DADMHM010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5755)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5755)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5755
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.229"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(7..2109)
                     /locus_tag="JN125_003692"
     CDS             complement(7..2109)
                     /locus_tag="JN125_003692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HAY8873309.1"
                     /translation="MKIFSVRQTVLPALLVLSPVVFAADEQTMIVSAAPQVVSELDTP
                     AAVSVVDGEEMRLATPRINLSESLTGVPGLQVQNRQNYAQDLQLSIRGFGSRSTYGIR
                     GIRLYVDGIPATMPDGQGQTSNINLSSVQNVEVLRGPFSALYGNASGGVMNVTTQTGQ
                     QPPTIEASSYYGSFGSWRYGLKATGATGDGTQPGDVDYTVSTTRFTTHGYRDHSGAQK
                     NLANAKLGVRIDEASKLSLIFNSVDIKADDPGGLTKAEWKANPQQAPRAEQYDTRKTI
                     KQTQAGLRYERSLSAQDDMSVMMYAGERETTQYQSIPMAPQLNPSHAGGVITLQRHYQ
                     GIDSRWTHRGELGVPVTFTTGLNYENMSENRKGYNNFRLNSGMPEYGQKGELRRDERN
                     LMWNIDPYLQTQWQLSEKLSLDAGVRYSSVWFDSNDHYVTPGNGDDSGDASYHKWLPA
                     GSLKYAMTDAWNIYLAAGRGFETPTINELSYRADGQSGMNFGLKPSTNDTIEIGSKTR
                     IGDGLLSLALFQTDTDDEIVVDSSSGGRTTYKNAGKTRRQGAELAWDQRFAGDFRVNA
                     SWAWLDATYRSNVCNEQDCNGNRMPGIARNMGFASIGYVPEDGWYAGTEARYMGDIMA
                     DDENTAKAPSYTLVGLFTGYKYNYHNLTVDLFGRVDNLFDKEYVGSVIVNESNGRYYE
                     PSPGRNYGVGMNIAWRFE"
     gene            2351..3412
                     /locus_tag="JN125_003693"
     CDS             2351..3412
                     /locus_tag="JN125_003693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HAY8873310.1"
                     /translation="MHLRHLFSSRLRGSLLLGSLLVASSFSTQAAEEMLRKAVGKGAY
                     EMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQT
                     LWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGI
                     GKESVIWVVDGENIKLKTAIQNTGKMSTGLALDSKGKRLYTTNADGELITIDTADNKI
                     LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPESLA
                     VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ
                     KSTKQQEATQPDDVIRIAL"
     gene            complement(3525..5024)
                     /gene="ansP"
                     /locus_tag="JN125_003694"
     CDS             complement(3525..5024)
                     /gene="ansP"
                     /locus_tag="JN125_003694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310084.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-asparagine permease"
                     /protein_id="HAY8873311.1"
                     /translation="MSKHDTDTSDQHAAKRRWLNAHEEGYHKAMGNRQVQMIAIGGAI
                     GTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFL
                     GEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGGVPQWVFALAALTIVGTMNM
                     IGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHG
                     LLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLV
                     MLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMA
                     MGGSAPSFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIAS
                     WAFIIVCQMRLRKAIKEGKAADVSFKLPGAPFTSWLTLLFLLSVLVLMAFDYPNGTYT
                     IAALPIIGILLVIGWFGVRKRVAEIHSTAPVVEEDEEKQEIVFKPETAS"
     gene            5291..>5755
                     /locus_tag="JN125_003695"
     CDS             5291..>5755
                     /locus_tag="JN125_003695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione S-transferase"
                     /protein_id="HAY8873312.1"
                     /translation="MIKVYGVPGWGSTISELMLTLADIPYQFVDVSGFDHEGTSRELL
                     KTLNPLCQIPTLALENDEIMTETAAIALMVLDRRPDLAPPVGRAERQQFQRLLVWLVA
                     NVYPTFTFADYPERWAPDAPEQLKKNVIEYRKSLYIWLNSQLTAEPYAFGEQL"
BASE COUNT         1517 a         1487 c         1381 g         1370 t
ORIGIN      
        1 aggtaattac tcaaatctcc acgcaatatt catgccgaca ccataatttc gtccgggcga
       61 aggttcgtaa tatcgcccgt ttgactcatt gacaatgaca gaaccaacgt attctttatc
      121 gaataaatta tcgacacgac caaataaatc cacagttaaa ttgtggtaat tgtatttata
      181 cccggtgaat aagccgacga gagtataaga cggcgctttt gccgtatttt catcatctgc
      241 cataatatcg cccatataac gcgcttccgt gcctgcatac caaccatctt ccggtacata
      301 acctatcgac gcaaagccca tattacgggc gatccctggc atccgattac cgttacaatc
      361 ctgttcattg caaacattgc tgcgataggt cgcatcaagc caggcccagg acgcgtttac
      421 gcgaaaatct cctgcgaaac gttgatccca tgccagttca gcgccttgac gacgggtctt
      481 tccggcattt ttgtaagtcg tacgcccacc gctactgcta tcgacaacaa tttcatcatc
      541 agtgtcggtc tgaaacaatg cgagactaag cagcccatca ccaatacgcg ttttactgcc
      601 gatctcaatt gtatcgttgg tggatggttt taaaccaaag ttcataccgc tttgcccatc
      661 agcacgataa gacagctcat taatcgtcgg cgtttcaaaa cctcgcccgg ctgccagata
      721 gatattccag gcatcggtca ttgcatattt taacgaaccg gcaggtagcc atttatgata
      781 actggcatca ccgctgtcat cgccgttacc cggagtaacg taatggtcgt tggaatcaaa
      841 ccacacggag ctgtagcgca cgccagcatc cagcgacagt ttttcgctca gctgccactg
      901 cgtctgtaaa tagggatcga tgttccacat cagattgcgt tcgtcgcgac gcaactcacc
      961 tttttgcccg tactccggca tgccgctatt caggcggaag ttattgtagc ccttgcggtt
     1021 ttcactcatg ttttcgtagt tcaggccggt agtgaacgtg accggaacgc ccagttcacc
     1081 acggtgtgtc cagcggctgt ctatcccctg gtaatggcgt tgcagggtaa tcacgccgcc
     1141 cgcatgtgac gggttaagtt gtggtgccat gggtattgac tggtactggg tcgtttctcg
     1201 ctctccggca tacatcatca cactcatatc atcttgcgcg ctcaggctac gctcatagcg
     1261 caacccagcc tgagtttgct tgatggtttt tcgcgtgtcg tactgttctg cacgaggcgc
     1321 ttgttgtgga ttagccttcc attctgcttt ggttagccca cctgggtcat ctgctttgat
     1381 atccacacta ttgaaaatca gacttaattt gctggcttca tcaatgcgta cgcccagttt
     1441 ggcattggct aaatttttct gtgcgccact atggtcacga tagccgtggg tcgtaaaacg
     1501 cgtggttgag acggtgtaat cgacatcgcc aggctgtgtg ccgtctcccg ttgcgcccgt
     1561 tgctttcagc ccatagcgcc agctgccaaa actgccgtag taactactgg cttcaatggt
     1621 tggtggctgt tgtccggtct gggtggtgac attcattacc ccaccagacg cgttgccata
     1681 cagggcagag aaggggccac gcagcacttc cacattttgc acactgctta aattgatgtt
     1741 ggatgtttgc ccttgcccgt cgggcatggt ggcgggaata ccgtccacat acaggcgaat
     1801 accgcgaata ccgtaagtgg agcgggagcc aaatccgcga atcgacagct gtaaatcttg
     1861 cgcatagttc tgccggtttt gtacctgcaa accaggcacg ccggtcagtg attcggacaa
     1921 gttaatgcgc ggtgttgcca ggcgcatctc ctcgccatcc accacgctta ctgctgctgg
     1981 ggtatccagt tctgaaacca cctgcggtgc ggcactgaca atcatagtct gttcatcagc
     2041 ggcaaaaaca acgggggaaa ggacaagcag tgcgggcaaa acggtctgtc ggacggaaaa
     2101 aatcttcatg aaaaaagcca ggttaagaat gggaaaacgc tgtcatggta ataaaattgt
     2161 aaacttatgg aaaacgaaac ggcacgatac gttaattaat tgagaaaatt gtagtcgtaa
     2221 cggcaagaaa tgctccacat ttgagaaaat aatgattacc attcccattt ataacaagag
     2281 cgtgacgatg attacgctta gcgaagcatt gtgaagcagc aaaaatattg gttcatcaaa
     2341 gggagtcgtc atgcatttac gtcatctgtt ttcatcgcgc ctgcgtggtt cattactgtt
     2401 aggttcattg cttgttgctt catcattcag tacgcaggcc gcagaagaaa tgctgcgtaa
     2461 agcggtaggt aaaggtgcct acgaaatggc ttatagccag caagaaaacg cgctgtggct
     2521 cgccacttcg caaagccgca aactggataa aggtggcgtg gtttatcgtc ttgatccggt
     2581 cactctggaa gtgacgcagg cgatccataa cgatctcaag ccgtttggtg ccaccatcaa
     2641 taacacgact cagacgttgt ggtttggtaa caccgtaaac agcgcggtca cggcgataga
     2701 tgccaaaacg ggcgaagtga aaggccgtct ggtgctggat gatcgtaagc gcacggaaga
     2761 ggtgcgcccg ctgcaaccgc gtgagctggt agctgatgat gccacgaaca ccgtttacat
     2821 cagtggtatt ggtaaagaga gcgtgatttg ggtcgttgat ggcgagaata tcaaactgaa
     2881 aaccgccatc cagaacaccg gtaaaatgag taccggtctg gcgcttgata gcaaaggcaa
     2941 acgtctttac accactaacg ctgacggcga attgattacc atcgacaccg ccgacaataa
     3001 aatcctcagc cgtaaaaagc tgctggatga cggcaaagag cacttcttta tcaacatcag
     3061 ccttgatacc gccaggcagc gtgcatttat caccgattct aaagcggcag aagtgttagt
     3121 ggtcgatacc cgtaatggca atattctggc gaaggttgcg gcaccggaat cactggctgt
     3181 gctgtttaac cccgcgcgta atgaagccta cgtaacgcat cgtcaggcag gtaaagtcag
     3241 tgtgattgac gcgaaaagct ataaagtggt gaaaacgttc gatacgccga ctcatccaaa
     3301 cagcctggcg ctgtctgccg atggcaaaac gctgtatgtc agtgtgaaac aaaaatccac
     3361 taaacagcag gaagctaccc agccagacga tgtgattcgt attgcgctgt aatagatatg
     3421 gcgagggtga aaacggtgag acttgcctgc cttttatcac ggcgtatccg gcactttcgt
     3481 cagtaatctg aatttgcccg gcacgtagcc gggcaatttt gcaattaact cgccgtttca
     3541 ggcttaaaca caatttcctg tttttcttca tcttcctcga cgactggcgc agtgctgtga
     3601 atttcagcaa cgcgtttgcg cacaccaaac cagcctataa ccagcagaat accgataatc
     3661 ggcagcgccg cgatagtata agtcccgttc gggtaatcga acgccatcag cacaaggaca
     3721 ctcagtaaaa acagtaatgt cagccaggaa gtgaagggcg cgccaggcag tttaaaactg
     3781 acatccgctg ctttgccttc tttaatcgct ttacgcaggc gcatctggca cacgatgata
     3841 aacgcccatg aagcgatgat tcccagcgac gcgaagttca acacaatctc aaatacgcgc
     3901 gacggcacca gatagttgag gaatacgccg acgacataca caaccagtgt cgctagaatc
     3961 ccggcatacg gcacatgctg acgactcatt ttcgccataa aactcggtgc ggaaccgccc
     4021 atcgccattg agcgcagaat acgtccggtg cagtacagac ctgagttcag gctggagagg
     4081 gcagcggtca gcaccacaat gttcataatg ctgccgatat atggcacacc cagtttagag
     4141 aaaaacgtca cgaacggact ttgccccgcc tgatacgcgc tccacggcaa taacataacc
     4201 agcaacacca cggagccgac gtaaaacagg ccaatacgcc aaatcacact gttaatggct
     4261 ttaggcacca tggtctgcgg atctttacat tctccggcag ctgtacccac catttcaatg
     4321 gaggcaaaag caaacactac gccctgaatc aacaccagcg caggcagcaa accgtggggg
     4381 aagaagccgc cattatcggt gattaaatga aagccagtgg tgttgccatc cagcggctga
     4441 ccactaccga ggaacactgt acccacgacc aaaaaggtca caatggcgag cactttaata
     4501 agcgcaaacc agaactccat ctccgcaaac catttcacac cgatcatatt catggtgcca
     4561 acgatggtaa gtgcagcgag cgcaaagacc cactgcggca cgccgccaaa cgcaccccag
     4621 taatgcatat acagagcgac ggcggtaata tcaacaatcc ccgtcatcgc ccagttgatg
     4681 aagtacatcc agccagcaac ataagcggct ttctcaccca aaaactcacg ggcataagag
     4741 acaaaactgc cactggaagg gcggtgtagc accagctcac ccaatgcacg cagaataaaa
     4801 aacgaaaaca agccacaaat taaataaacc agtgccagtg ctggacccgc catttgcagt
     4861 cgggctcctg cacctaaaaa caagccggtg ccaatcgcgc cgccaatggc gatcatctgt
     4921 acctggcgat tgcccatcgc tttgtgatac ccctcttcgt gggcattaag ccagcggcgt
     4981 ttcgcggcgt gttgatctga agtgtcggtg tcgtgtttac tcattgctct ccctgattgc
     5041 tttaatgaaa aagtcatata agttgccatg aacaatgttt atttatcctg gcgatgatag
     5101 ttatcaccat tattctttat gggtataaaa ctatcggcgc agcatcctac ccgttatcga
     5161 tatacgatgc aaaacatccc cttacaatcc tgaaggggat tcatacaact gacgaaaaaa
     5221 tgacaaatac ttttgctggt taacctgtgt actgtcctac acttaatcct taaaagattg
     5281 tgaggggcat atgattaagg tgtatggcgt acccggatgg ggctctacaa tcagtgagct
     5341 gatgctaaca ctggctgata ttccttatca gttcgttgat gtcagtggtt ttgaccacga
     5401 gggaacttca cgcgagttat tgaaaaccct gaacccgttg tgtcagattc cgacactggc
     5461 gctggaaaat gacgagatta tgacggagac agcggcgatt gcattgatgg ttctcgatcg
     5521 tcgcccggac cttgcgccac cggttgggcg cgccgaacgt cagcagtttc aacggctatt
     5581 ggtctggctg gttgctaatg tctatccaac attcactttc gccgattacc ctgagcgttg
     5641 ggctcctgac gcacctgaac agttaaagaa gaatgttatt gaatatcgta aatcgcttta
     5701 tatctggctg aattcacaat tgaccgctga accttatgcg tttggtgagc aacta
//
LOCUS       DADMHM010000225         5655 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.230, whole genome shotgun sequence.
ACCESSION   DADMHM010000225 DADMHM010000000
VERSION     DADMHM010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5655)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5655)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5655
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.230"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..894
                     /locus_tag="JN125_003696"
     CDS             <1..894
                     /locus_tag="JN125_003696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C"
                     /protein_id="HAY8873313.1"
                     /translation="SDTAFCLSCHSMSKPFEEYQGTVHFSNQKGIRAECADCHIPKSG
                     MDYLFAKLKATDSATCRSCHSFDAMDIASQSESAQKMHNKAQKGGETCIDCHKGIAHF
                     PPEIKMDDNAAHELESQAATSVTNGAHIYLFKTSRIGELATVNPGTDLTVVDASGKQP
                     IVLLQGYQMQGSENTLYLAAGQRLALATLSEEGIKALTLNGEWQADEYGNQWRQASLQ
                     GALTDPGLADRKPLWQYAEKLDDTYCAGCHAPIAADHYTVNAWPSIAKGMGARTSMSE
                     NELDILTRYFQYNAKDITEKQ"
     gene            919..3348
                     /locus_tag="JN125_003697"
     CDS             919..3348
                     /locus_tag="JN125_003697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310609.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin guanine dinucleotide-containing
                     S/N-oxide reductase"
                     /protein_id="HAY8873314.1"
                     /translation="MTLTRREFIKHSGIAAGALVVTSAAPLPAWAEEKGGKILTAGRW
                     GAMNVEVKDGKIVSSTGALAKTIPNSLQSTAADQVHTTTRIQHPMVRKSYLDNPLQPT
                     KGRGEDTYVQVSWEQALKLIHEQHDRIRKANGPSAIFAGSYGWRSSGVLHKAQTLLQR
                     YMNLAGGYSGHSGDYSTGAAQVIMPHVVGSVEVYEQQTSWPLILENSQVVVLWGMNPL
                     NTLKIAWSSTDEQGLEYFHQLKKSGKPVIAIDPIRSETIDFFGDNATWIAPNMGTDVA
                     LMLGIAHTLMTQGKHDKVFLEKYTTGYPQFEEYLRGKSDNTPKSAAWAAEITGVPEAQ
                     IVKLAELMAANRTMLMAGWGIQRQQYGEQKHWMLVTLAAVLGQIGTPGGGFGFSYHYS
                     NGGNPTRVGGVLPEMSAAIAGQASEAADDGGMRAIPVARIVDALENPGGKYQHNGKEQ
                     TYPNIKMIWWAGGGNFTHHQDTNRLIKAWQKPEMIVVSECYWTAAAKHADIVLPITTS
                     FERNDLTMTGDYSNQHIVPMKQAVAPQFEARNDFDVFADLAELVKPGGKEIYTEGKDE
                     MAWLKFFYDAAQKGARAQRVTMPMFNAFWQQNKLIEMRRSEKNEQYVRYADFRADPVK
                     NALGTPSGKIEIYSKTLEKFGYKDCPAHPTWLAPDEWKGTADEKQLQLLTAHPAHRLH
                     SQLNYAELRKKYAVADREPITIHTEDAARFGIANGDLVRVWNKRGQILTGAVVTDGIK
                     KGVVCVHEGAWPDLENGLCKNGSANVLTADIPSSQLANACAGNSALVYIEKYTGNAPK
                     LTAFDKPAVQA"
     gene            complement(3513..4484)
                     /gene="cmoB"
                     /locus_tag="JN125_003698"
     CDS             complement(3513..4484)
                     /gene="cmoB"
                     /locus_tag="JN125_003698"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HAY8873315.1"
                     /translation="MIDFGNFYSLIAKNHLSHWLETLPAQIANWQREQQHGLFKQWSN
                     AVEFLPEIKPYRLDLLHSVTAESEEPLSTGQIKRIETLMRNLMPWRKGPFSLYGVNID
                     TEWRSDWKWDRVLPHLSDLTGRTILDVGCGSGYHMWRMIGAGAHLAVGIDPTQLFLCQ
                     FEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYHRRSPLEHLWQLKDQLVN
                     EGELVLETLVIDGDENTVLVPGDRYAQMRNVYFIPSALALKNWLKKCGFVDIRVVDVC
                     VTTTEEQRRTEWMVTESLSDFLDPHDPSKTVEGYPAPKRAVLIARKP"
     gene            complement(4481..5224)
                     /gene="cmoA"
                     /locus_tag="JN125_003699"
     CDS             complement(4481..5224)
                     /gene="cmoA"
                     /locus_tag="JN125_003699"
                     /EC_number="2.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000019619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HAY8873316.1"
                     /translation="MSHRDTLFSAPIARLGDWTFDERVAEVFPDMIQRSVPGYSNIIS
                     MISMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHI
                     DAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGAL
                     VLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARL
                     HKAGFEHSELWFQCFNFGSLVALKAEDAV"
     gene            complement(5265..5606)
                     /locus_tag="JN125_003700"
     CDS             complement(5265..5606)
                     /locus_tag="JN125_003700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005149269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873317.1"
                     /translation="MCHFSLRLQYRVAYGDGGFSELQSAIRIHGNAVEYIPIAIVLML
                     FMEMNGAETWMVHICGIVLLAGRLMHYYGFHHRLFRWRRSGMSATWCALLLMVLANLW
                     YMPWELVFSLR"
BASE COUNT         1525 a         1388 c         1493 g         1249 t
ORIGIN      
        1 tcggatacag cattttgcct ttcctgccac tcgatgagta aaccttttga ggaatatcag
       61 ggaactgtcc acttttcgaa ccagaaaggg atacgtgcgg aatgtgcaga ttgccatatt
      121 ccaaagtcag ggatggatta tttatttgct aaattaaaag caactgactc tgcaacgtgc
      181 cgtagttgcc attcttttga tgccatggat attgcctcgc aaagtgaatc tgcgcagaaa
      241 atgcataaca aagcacaaaa gggcggcgaa acctgtatcg attgtcataa aggcattgcc
      301 cattttccgc cagaaataaa aatggatgac aacgcggcgc atgagctgga aagtcaggcc
      361 gctacttcag tgactaatgg cgcacatatt tatcttttca aaacttctcg cataggcgag
      421 ctggctaccg tgaatcctgg taccgatctc accgtcgttg atgccagtgg caaacagccg
      481 atcgttctgt tgcagggtta tcaaatgcag ggcagtgaaa acacgctcta cctggcggca
      541 ggtcaacggc tggcgctagc cacattaagt gaagaaggta tcaaggcgct cacgctaaac
      601 ggggaatggc aggctgacga atacggcaat caatggcgtc aggcgtcttt acagggtgcg
      661 cttaccgatc ccggattagc ggaccgtaaa ccgctatggc aatacgctga aaaacttgac
      721 gatacctatt gcgctggttg tcatgcccct attgccgccg accattacac cgtcaatgcg
      781 tggccgtcca ttgccaaagg aatgggggca cgaaccagca tgagcgaaaa cgaactggac
      841 attttaacgc ggtatttcca gtacaacgcc aaagatatta ccgagaaaca gtgatcctcg
      901 ttgatcaggg aggaagttat gacattaaca agacgtgaat ttattaaaca cagcggtatt
      961 gccgctggag cgctggtggt gacatcggca gcaccgctcc ccgcatgggc agaagagaag
     1021 ggcggtaaaa tcctcaccgc gggacgttgg ggagcgatga acgtagaagt gaaggacggc
     1081 aagattgttt cttcaacagg cgcgctggcg aaaaccatac cgaattcctt acagtctacg
     1141 gcggcggatc aggtacacac cacgacgcgt attcagcatc cgatggtgag aaaaagctat
     1201 ctcgataatc cactgcaacc gacgaaaggt cgtggcgaag atacctatgt acaggtgagc
     1261 tgggaacaag cattaaaact gattcatgag caacacgatc gcattcgcaa agctaacgga
     1321 ccatcggcta tttttgccgg atcatacggc tggcgctctt ctggcgtgtt gcataaagcg
     1381 caaaccttac tgcaacgtta tatgaacctg gcgggcggtt attccgggca tagcggcgat
     1441 tattcaaccg gggcggcaca ggtgatcatg ccgcatgtgg tcggttctgt agaggtgtat
     1501 gaacagcaga cctcctggcc gctgattctg gaaaacagcc aggttgtggt gctgtggggg
     1561 atgaacccgc tgaatacctt aaaaattgcc tggagcagta ccgatgagca agggctggaa
     1621 tacttccatc agctaaaaaa atctggcaaa ccagtgattg ccattgatcc tatccgctcc
     1681 gaaaccatcg acttctttgg cgataatgcc acctggatcg cgccgaatat gggcaccgac
     1741 gtggcactga tgttagggat tgcgcatacc ctgatgacac aaggcaaaca cgataaagtg
     1801 ttccttgaaa aatacactac cgggtatccg cagtttgaag agtatctgag aggtaagagc
     1861 gataatacgc cgaagagcgc ggcctgggcg gcggaaatta ctggcgtacc ggaagcgcag
     1921 atagtcaaac tcgctgaact gatggcggcg aatcgcacaa tgctgatggc aggctgggga
     1981 attcagcgcc agcaatatgg tgaacagaaa cactggatgc tggtgacgct ggcggcggtg
     2041 ttagggcaga ttggtacacc gggcggcggt tttggtttct cttatcatta ctccaatggt
     2101 ggcaacccga cacgtgttgg cggcgtgctg ccggaaatgt ctgcggcgat tgccggacag
     2161 gccagcgagg ccgctgatga tggcggaatg agggcgattc ctgttgcccg tatcgtcgat
     2221 gcgctggaaa atcctggcgg caaatatcag cataacggta aagagcaaac gtatccgaat
     2281 atcaaaatga tctggtgggc gggtggcggt aactttaccc atcaccagga tactaatcgt
     2341 ctgattaaag catggcagaa accggagatg atcgtcgttt ctgaatgcta ctggaccgca
     2401 gctgctaaac atgcagatat cgtattaccg atcaccacat cgtttgagcg caatgacttg
     2461 acgatgaccg gtgattacag caaccagcat attgtgccga tgaagcaggc tgtcgctccg
     2521 caatttgaag cgcgaaacga ttttgatgtg tttgccgatc ttgcggaatt agtgaaacct
     2581 ggcggaaaag agatctatac cgaaggtaaa gatgaaatgg cgtggctgaa atttttctat
     2641 gatgccgctc agaaaggtgc ccgtgcgcaa cgcgtgacta tgccgatgtt taatgccttc
     2701 tggcagcaaa ataaactgat cgaaatgcgc cgcagcgaga agaacgaaca gtacgttcgt
     2761 tatgctgatt tccgcgccga tccggtgaaa aatgcgctgg gtacgccaag cggcaaaatt
     2821 gagatttact ccaaaacgct ggaaaaattt ggctataagg attgcccggc acacccaacc
     2881 tggcttgcgc ctgatgagtg gaagggtacc gccgacgaga agcagttgca gcttctgacc
     2941 gcacatccgg cacaccgttt acatagtcag cttaactatg cggaactgcg taaaaaatat
     3001 gcggttgcag atcgtgaacc aatcactatt cataccgaag atgctgctcg ctttggtatt
     3061 gcgaatggtg atctggtgcg tgtgtggaac aaacgtggtc agattctgac aggcgcggtg
     3121 gtgactgacg ggatcaaaaa aggcgtggta tgcgtgcatg aaggtgcatg gccagatctg
     3181 gaaaatggct tgtgtaaaaa cggcagtgcg aacgtgttaa cggcggatat ccccagctcg
     3241 cagctggcaa atgcctgtgc cggtaactct gcgctggtgt atatcgaaaa atatacgggt
     3301 aacgcaccga agttaacggc atttgataag cctgctgttc aggcgtaaga agtgaatagc
     3361 gcccggaaac gggcgctgag gttatgcaaa cgtaaaactg cctgatgcgc tatgcttatc
     3421 aggcctacat agtccctgca atagattgaa ttagcaaggg tttgtaggcc ggataaggca
     3481 ttcacgctgc atccggcagt aataccagac ctttacggct tgcgcgcaat cagcaccgcg
     3541 cgtttaggcg caggataacc ttcaactgtc ttactcggat catgtgggtc gaggaaatcg
     3601 gacagagatt cggtaaccat ccattcagtg cgtcgctgct cttcagtagt ggtaacgcac
     3661 acatccacaa cgcggatatc tacaaaacca cacttcttca gccagttttt cagcgccagc
     3721 gcggaaggga tgaaatagac attacgcatt tgcgcgtaac gatcgcctgg taccagcacc
     3781 gtgttctcat cgccatcaat aaccagcgtt tccagcacca gttcaccctc attcaccagt
     3841 tgatctttca actgccagag atgctccagc ggcgaacggc gatggtaaag cacgcccatc
     3901 gaaaagacgg tatcaaaggc tttcagtgcc ggaagctgtt caatacctaa cggtaacaaa
     3961 tgtgcgcgct gatcgttacc cagtagttta cgcaccgctt caaactggca cagaaacagt
     4021 tgcgtagggt cgatccccac cgcgaggtgc gcgcctgcgc caatcatgcg ccacatgtga
     4081 taaccgctgc cgcagccgac atccagaatg gtgcgtccgg ttaaatcaga aagatggggc
     4141 agaacacgat cccatttcca gtcggaacgc cattcggtat cgatgttgac gccatacagt
     4201 gagaacggcc ctttgcgcca tggcatcagg ttccgcataa gcgtttcaat gcgtttaatt
     4261 tgcccggtgc tcagtggctc ttcgctttcg gcggttacgc tatgcaataa atccagacga
     4321 tacggtttaa tttcaggcag aaattccacc gcgttggacc actgcttaaa cagcccgtgc
     4381 tgctgctcgc gctgccagtt agcaatctgc gcgggcagcg tttcgagcca gtgtgaaaga
     4441 tgatttttgg caatcagaga ataaaagtta ccaaagtcga tcatacagcg tcctctgctt
     4501 ttaatgccac cagtgaacca aagttaaagc actggaacca cagctcgcta tgctcaaaac
     4561 cggctttatg caggcgtgct ttatgggttt ccacggaatc ggtcagcatc acgttttcca
     4621 gcatgctgcg cttctggctg atctccagtt cgctgtaacc gttggcacgt ttaaagtcgt
     4681 ggtgcatgtt gaacaacagt tcaccaactt tggcatcttc gaaactgaat ttttccgaaa
     4741 gcaccagcgc gccgcccggg ttcagtcctt gataaatttt atccagtaat gcctggcgct
     4801 cggaaggttc caggaattgc agggtaaaat tcagcaccac catcgatgcg ttttcaatgg
     4861 cgatatcgcg aatatcacct tcaatgacgt ctactggcgt aggggcttta taggcgtcaa
     4921 tatgacgacg gcagcgttca atcatcgccg gggagttgtc gatggcaata attttgcaat
     4981 tatcatgatg aatgttgcga cgcaccgaga gcgtcgccgc gcccagagaa caacccagat
     5041 cgtaaacctg cgtaccaggt tgaacgaagc gctcggctag catactaatc atggaaataa
     5101 tattggaata gccgggaacg gaacgctgga tcatatccgg gaagacttca gctacccgtt
     5161 catcaaaggt ccagtcgccc agtctggcga taggggcaga aaatagcgtg tcgcggtgag
     5221 acataacgta aaaatccggg aaaaagaaag tggcgtattg tgcgctaacg cagggagaaa
     5281 accaactccc agggcatata ccaaagattc gccagcacca tcagcaacag cgcacaccag
     5341 gtggcgctca tgccggaacg tcgccagcga aacagacggt gatgaaaacc gtaataatgc
     5401 atcagacgac cagcaagcaa aacgatgccg caaatatgca ccatccaggt ttctgcgcca
     5461 ttcatttcca taaacagcat cagcacaatc gcgatgggaa tatattccac cgcgttacca
     5521 tgaatgcgaa tagcgctttg cagttcgcta aaaccaccgt caccataggc aacgcggtac
     5581 tgcaaacgca agctgaagtg gcacactgaa tttggccacc tgaacagagg tgatatgctc
     5641 acctcagaac aacac
//
LOCUS       DADMHM010000226         5646 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.231, whole genome shotgun sequence.
ACCESSION   DADMHM010000226 DADMHM010000000
VERSION     DADMHM010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5646)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5646)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5646
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.231"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(72..809)
                     /gene="bamD"
                     /locus_tag="JN125_003701"
     CDS             complement(72..809)
                     /gene="bamD"
                     /locus_tag="JN125_003701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HAY8873318.1"
                     /translation="MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQ
                     DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH
                     PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
                     TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLM
                     ENAYRQMQMNAQAEKVAKIIAANSSNT"
     gene            944..1924
                     /gene="rluD"
                     /locus_tag="JN125_003702"
     CDS             944..1924
                     /gene="rluD"
                     /locus_tag="JN125_003702"
                     /EC_number="5.4.99.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017383977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(1911/1915/1917) synthase
                     RluD"
                     /protein_id="HAY8873319.1"
                     /translation="MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQR
                     VLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIVINKPRDL
                     VVHPGAGNLDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVE
                     SLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF
                     RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDR
                     QALHATMLRLYHPISGIEMEWHAPIPEDMVELIEVMRADFEEHKDEVDWL"
     gene            1921..2652
                     /gene="pgeF"
                     /locus_tag="JN125_003703"
     CDS             1921..2652
                     /gene="pgeF"
                     /locus_tag="JN125_003703"
                     /EC_number="1.10.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphenol oxidase"
                     /protein_id="HAY8873320.1"
                     /translation="MSKLIVPQWPLPKGVAACSSTRIGGVSLPPYDSLNLGAHCGDNP
                     EHVEENRKQLFAAGNLPSKPVWLEQVHGKDVLKLTGEPYASKRADASYSNTPGTVCAV
                     MTADCLPVLFCNRAGTEVAAVHAGWRGLCAGVLEETVSCFADKPENILAWLGPAIGPR
                     AFEVGAEVREAFMAVDAKASAAFIQHGDKYLADIYQLARQRLANVGVEQIFGGDRCTY
                     TENETFFSYRRDKTTGRMASFIWLI"
     gene            2782..5355
                     /gene="clpB"
                     /locus_tag="JN125_003704"
     CDS             2782..5355
                     /gene="clpB"
                     /locus_tag="JN125_003704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002461515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HAY8873321.1"
                     /translation="MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGG
                     SVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRG
                     DNFISSELFVLAALESRGTLADILKAAGATTANITQAIEQMRGGESVNDQGAEDQRQA
                     LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG
                     LAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILF
                     IDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQ
                     KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAID
                     LIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSD
                     KERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPE
                     LEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQEL
                     HHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFD
                     SDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA
                     HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKEL
                     VLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIYISDE
                     ALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAV
                     Q"
BASE COUNT         1411 a         1345 c         1527 g         1363 t
ORIGIN      
        1 gatcggtcaa ctgatcctta actgatcggc attacagctc aagggctgcc gttttgtgtt
       61 tcaggtttct gttatgtatt gctgctgttt gcggcgatga ttttcgctac tttttcagct
      121 tgcgcattca tctgcatctg acggtatgca ttttccatca gtggcagcgc atcacgcgta
      181 gcctgggtat ccgggtagtc gcgcaacatg ccttctacgc ggttaacgac ggcaacccat
      241 gcaccacgtt ctgtatagta ctcggcaacg gagtattcat atttcgccag acgatctttc
      301 aggaatacca gacgtttggt tgcatcggta gtgtactgac tgttcggata gccgcgcacc
      361 agtttggaaa agtcactaaa cgcagctcgt gcatgttgag gatcgcgatc gctacggtca
      421 acgccaaaga acccttgcag cgcactgtca tccagcgcca tattggtcag gccacgcatg
      481 tacatgacat aatcgatatt cggatgggtc gggttaaggc gaataaaacg atcgatggca
      541 gcctgtgcta acggcaaatc ggcgttttta tagtaggcgt agatgagatc cagctgcacc
      601 tgctgcgaat acggaccaaa cggatagcga ttatctaatg cttccagttg cgttattgcc
      661 tgtctccagt taccgtcctg cagcttttgt tgtgcagtcg cgtaaatttc atttggtgga
      721 ttatcaggta cttcttcctt tgaccccgag caacccgcca aaaacaggct tagtgtggcg
      781 gctgccacca gatatttcat gcgcgtcatg acgttttgac tttcctcaaa atgtaatacg
      841 ggagattctc tgttcctgct cccggttaag accagctaca atagcacact atattaaacg
      901 gcaaagccgt aaaaccccaa cgataaacga agaagcagta tatatggcac aacgagtaca
      961 gctcactgca acggtgtccg aaaaccaact cggtcaacgc ttagatcagg ctttggccga
     1021 aatgttcccg gattattcac gttcgcgaat aaaagaatgg atcctcgacc agcgcgtgct
     1081 ggtaaacggc aaagtttgtg ataagccgaa agaaaaagta ttgggtggcg agcaggttgc
     1141 catcaacgct gagattgaag aagaagcgcg ttttgaaccg caggatatcc cgctggatat
     1201 tgtctatgaa gatgaagata tcatcgtcat taataaaccg cgcgacctgg tggtacatcc
     1261 tggcgcgggt aacctggatg gcacggtact gaatgcgttg cttcattatt atccgcccat
     1321 tgccgatgta ccgcgtgcgg gcatcgtcca tcgtctggat aaagacacca ctggcctgat
     1381 ggttgtggca aaaaccgttc cggctcagac gcgtttagtc gaatctttgc aaaggcgtga
     1441 aattactcgt gagtatgaag cggtggcaat tggtcatatg accgctggcg gtacagtaga
     1501 tgaaccaatc agccgccacc cgaccaaacg tactcacatg gcggtgcatc ccatgggcaa
     1561 accggcggtc actcactatc gcatcatgga acacttccgt gtgcacacgc gtctgcggtt
     1621 gcgtctggaa accggacgta cgcaccagat ccgcgtgcat atggcgcata ttacccatcc
     1681 gctggtgggc gatccggttt atggtggccg tccgcgtccg ccaaaaggtg cttcggaagc
     1741 gtttatctcc acgctgcgta agtttgaccg ccaggcgctt catgcaacta tgctgcgtct
     1801 ttatcacccg atctccggca tcgaaatgga atggcatgcg cctattccag aagatatggt
     1861 ggagttgatt gaggttatgc gcgccgattt cgaagagcat aaggatgaag tggactggtt
     1921 atgagtaagc tgattgtccc gcagtggccg ctgccaaaag gtgttgcggc ctgtagctct
     1981 acccgtatcg gcggcgtgag cttgccacct tacgactctc tcaaccttgg cgctcattgt
     2041 ggtgataacc cggagcacgt agaggagaat cgcaagcaac tttttgctgc gggaaatttg
     2101 ccttcaaaac cggtctggct tgagcaggta cacggcaaag atgtgcttaa gctcactggc
     2161 gaaccttatg cctcaaaacg ggcggatgcc tcttatagca atacgcccgg cacggtttgc
     2221 gcagtgatga ctgccgactg cctccctgtg ctgttttgca atcgagcggg aacggaagtc
     2281 gccgccgttc atgctggctg gcgtggactg tgcgcaggcg tgctggaaga gacggtttcc
     2341 tgttttgctg ataaacctga aaacattctc gcctggttag ggccggcaat tggtccacgc
     2401 gcgttcgaag tgggggcgga ggttcgcgag gcgtttatgg cagtagacgc taaagcaagt
     2461 gcagctttca ttcagcatgg tgataagtat ctggcggata tttatcagct tgcccggcag
     2521 cgtctggcga acgtgggtgt tgagcaaatt ttcggcggcg accgttgtac atatacggaa
     2581 aatgagactt tcttctctta tcgtcgcgac aagaccaccg gtcgtatggc aagtttcatt
     2641 tggctgatat aacctaaaga atcaagacga ttcggtacgc gtgattttct tttcacatta
     2701 atctggtcaa taaccttgaa taattgaggg atgacctcat ttaatctcca gtagcaactt
     2761 tgatccgtta tgggaggagt tatgcgtctc gatcgtctta ctaataaatt ccagcttgct
     2821 cttgccgatg cccaatcact tgcactcggg cacgacaacc aattcatcga accacttcat
     2881 ttaatgagcg ccctgctgaa tcaggaaggg ggttcggtta gtcctttatt aacatccgct
     2941 ggcataaatg ctggccagtt gcgcacagat atcaatcagg cattaaatcg tttaccgcag
     3001 gttgaaggta ctggtggtga tgtccagcca tcacaggatc tggtgcgcgt tcttaatctt
     3061 tgcgacaagc tggcgcaaaa acgaggtgat aactttatct cgtcagaact gttcgttctg
     3121 gcggcacttg agtctcgcgg cacgctggcc gacatcctga aagcagcagg ggcgaccacc
     3181 gccaacatta ctcaagcgat tgaacaaatg cgtggaggtg aaagcgtgaa cgatcaaggt
     3241 gctgaagacc aacgtcaggc tttgaaaaaa tataccatcg accttaccga acgagccgaa
     3301 cagggcaaac tcgatccggt gattggtcgt gatgaagaaa ttcgccgtac cattcaggtg
     3361 ctgcaacgtc gtactaaaaa taacccggta ctgattggtg aacccggcgt cggtaaaact
     3421 gccatcgttg aaggtctggc gcagcgtatt atcaacggcg aagtgccgga aggattgaaa
     3481 ggccgccgcg tactggcgct ggatatgggc gcgctggtgg ctggggcgaa atatcgcggt
     3541 gagtttgaag aacgtttaaa aggcgtgctt aacgatcttg ccaaacagga aggcaacgtc
     3601 atcctgttta tcgacgaatt acataccatg gtcggcgcgg gtaaagccga tggcgcaatg
     3661 gacgccggaa acatgctgaa accggcgctg gcgcgtggtg aattgcactg cgtaggtgcc
     3721 acgacgcttg acgaatatcg ccagtacatc gaaaaagatg ctgcgctgga acgtcgtttc
     3781 cagaaagtgt ttgttgccga gccttctgtt gaagatacca ttgcgattct gcgtggcctg
     3841 aaagaacgtt acgaattgca ccaccatgtg caaattactg acccggcaat tgttgcagca
     3901 gcgacgttgt ctcatcgcta cattgctgac cgtcagctgc cggataaagc catcgacctg
     3961 atcgatgaag cagcatccag cattcgtatg cagattgact caaaaccaga agaactcgac
     4021 cgactcgatc gtcgtatcat ccagctcaaa ctggaacaac aggcgttaat gaaagagtct
     4081 gatgaagcca gtaaaaaacg cctggatatg ctcaacgaag aactgagcga caaagaacgt
     4141 cagtactccg agttagaaga agagtggaaa gcagagaagg catcgctttc tggtacgcag
     4201 accattaaag cggaactgga acaggcgaaa atcgctattg aacaggctcg ccgtgtgggg
     4261 gacctggcgc ggatgtctga actgcaatac ggcaaaatcc cggaactgga aaagcaactg
     4321 gaagccgcaa cgcagctcga aggcaaaact atgcgtctgt tgcgtaataa agtgaccgac
     4381 gccgaaattg ctgaagtgct ggcgcgttgg acggggattc cggtttctcg catgatggaa
     4441 agcgagcgcg aaaaactgct gcgtatggag caagaactgc accatcgcgt cattggtcag
     4501 aacgaagcgg ttgatgcggt atctaacgct attcgccgta gccgtgcggg gttggcggat
     4561 ccaaatcgcc cgattggttc attcctgttc ctcggcccaa cgggtgtggg gaaaactgag
     4621 ctttgtaagg cgctggcgaa ctttatgttt gatagcgacg aggcgatggt ccgtatcgat
     4681 atgtccgagt ttatggagaa acactcggtg tctcgtctgg ttggtgcgcc tccgggatat
     4741 gtcggttatg aagaaggtgg ctacctgacc gaagctgtgc gtcgtcgtcc gtattccgtc
     4801 atcctgctgg atgaagtgga aaaagcgcat ccggatgtct tcaacattct gttgcaggta
     4861 ctggatgatg gtcgtctgac tgacgggcag gggagaacgg tcgacttccg taatacggtt
     4921 gtcattatga cctctaacct cggttccgat ttgattcagg aacgcttcgg tgaactggat
     4981 tatgcgcaca tgaaagagct ggtgctcggt gtggtaagcc ataacttccg tccggaattc
     5041 attaaccgta ttgatgaagt ggtggtcttc catccgctgg gtgaacagca cattgcctcg
     5101 attgcgcaga ttcagttgaa acgtctgtac aaacgtctgg aagaacgtgg ttatgaaatc
     5161 tacatttctg acgaggcgct gaaactgctg agcgagaacg gttacgatcc agtctatggt
     5221 gcacgtcctt tgaaacgtgc tatccagcag cagatcgaaa acccgctggc acagcaaata
     5281 ctgtctggtg aattggttcc gggtaaagtg attcgcctgg aagttaatga agaccggatt
     5341 gtcgctgtcc agtaatgata aaacgagccc ttcggggctc gtttttgtct ataagttaga
     5401 cggaaaagac tatatttaag atgttttgcc tgaaaaatga gcgaacgata aagtttttat
     5461 atttttcgct tgtcaggccg gaataactcc ctataatgcg ccaccactga cacggaacaa
     5521 cggcaaacac gccgccgggt cagcggggtt ctcctgagaa tctcaacaga gaaaagcaaa
     5581 aaaatgcttg actctgtagc gggaaagcgt attatgtaca ccccagagct gctgagaaaa
     5641 aaacga
//
LOCUS       DADMHM010000227         5590 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.232, whole genome shotgun sequence.
ACCESSION   DADMHM010000227 DADMHM010000000
VERSION     DADMHM010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5590)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5590)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5590
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.232"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..66
                     /locus_tag="JN125_003705"
     CDS             <1..66
                     /locus_tag="JN125_003705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome modulation factor"
                     /protein_id="HAY8873322.1"
                     /translation="NQRSQWLGGWREAMADRVVMA"
     gene            complement(136..654)
                     /gene="fabA"
                     /locus_tag="JN125_003706"
     CDS             complement(136..654)
                     /gene="fabA"
                     /locus_tag="JN125_003706"
                     /EC_number="4.2.1.59"
                     /EC_number="5.3.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014915875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-hydroxydecanoyl-ACP
                     dehydratase/trans-2-decenoyl-ACP isomerase"
                     /protein_id="HAY8873323.1"
                     /translation="MVDKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMT
                     ETGGNFDKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEG
                     KGRALGVGEVKFTGQVLPTAKKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASD
                     LKVGLFQDTSAF"
     gene            complement(723..2483)
                     /locus_tag="JN125_003707"
     CDS             complement(723..2483)
                     /locus_tag="JN125_003707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lon protease family protein"
                     /protein_id="HAY8873324.1"
                     /translation="MTITKLAWRDLVPDTDSYQEIFAQPHLIDENDPLFSDTQPRLQF
                     ALEQLLHTRASSSFMLAKAPEESEYLNLIADAARTLQSDAGQLVGDHYEVSGHSIRLR
                     HAVSADDNFATLTQVVAADWVEAEQLFGCLRQFNGDITLQPGLVHQANGGILIISLRT
                     LLAQPLLWMRLKNIVNRERFDWVAFDESRPLPVSVPSMPLKLKVILVGERESLADFQE
                     MEPELSEQAIYSEFEDTLQIVDAESVSQWCRWVTFTARHNHLPAPGADAWPVLIREAA
                     RYTGEQETLPLSPQWILRQCKEVASLCDGDTFSGEQLNLMLQQREWREGFLAERMQDE
                     ILQEQILIETEGERIGQINALSVIEFPGHPRAFGEPSRISCVVHIGDGEFTDIERKAE
                     LGGNIHAKGMMIMQAFLMSELQLEQQIPFSASLTFEQSYSEVDGDSASMAELCALISA
                     LADVPVNQSIAITGSVDQFGRAQPVGGLNEKIEGFFAICQQRELTGKQGVIIPTANVR
                     HLSLHSELVKAVEEGKFTIWAVDDVTDALPLLLNLVWDGEGQTTLMQTIQERIAQASQ
                     QEGRHRFPWPLRWLNWFIPN"
     gene            2669..3121
                     /gene="matP"
                     /locus_tag="JN125_003708"
     CDS             2669..3121
                     /gene="matP"
                     /locus_tag="JN125_003708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="macrodomain Ter protein MatP"
                     /protein_id="HAY8873325.1"
                     /translation="MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVL
                     LSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQ
                     RLAGLAQRRGKTLSETIVQLIEDAENKEKYANKMSSLKLDLQALLGKE"
     gene            complement(3197..4237)
                     /gene="ompA"
                     /locus_tag="JN125_003709"
     CDS             complement(3197..4237)
                     /gene="ompA"
                     /locus_tag="JN125_003709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin OmpA"
                     /protein_id="HAY8873326.1"
                     /translation="MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGF
                     INNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGSVENGAYKAQGVQLTA
                     KLGYPITDDLDIYTRLGGMVWRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRL
                     EYQWTNNIGDAHTIGTRPDNGMLSLGVSYRFGQGEAAPVVAPAPAPAPEVQTKHFTLK
                     SDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLSER
                     RAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEIEV
                     KGIKDVVTQPQA"
     gene            complement(4594..5103)
                     /gene="sulA"
                     /locus_tag="JN125_003710"
     CDS             complement(4594..5103)
                     /gene="sulA"
                     /locus_tag="JN125_003710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division inhibitor SulA"
                     /protein_id="HAY8873327.1"
                     /translation="MYTSGYAHRSSSFSSAASKIARVSTENTTAGLISEVVYREDQPM
                     MTQLLLLPLLQQLGQQSRWQLWLTPQQKLSREWVQASGLPLTKVMQISQLSPCHTVES
                     MVRALRTGNYSVVIGWLADDLTEEEHAELVDAANEGNAMGFIMRPVSASSHATRQLSG
                     LKIHSNLYH"
     gene            5322..>5590
                     /gene="sxy"
                     /locus_tag="JN125_003711"
     CDS             5322..>5590
                     /gene="sxy"
                     /locus_tag="JN125_003711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRP-S regulon transcriptional coactivator Sxy"
                     /protein_id="HAY8873328.1"
                     /translation="MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVS
                     DGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLNYYRVDESLWR"
BASE COUNT         1450 a         1384 c         1374 g         1382 t
ORIGIN      
        1 aatcaaaggt cacaatggct gggaggctgg cgagaagcca tggcggacag ggtagtaatg
       61 gcctgattct gtctctttaa aaagaaacct ccgcattgcg gaggtttcgc cttttgatac
      121 tctgtctgat gataatcaga aggcagacgt atcctggaac agaccgactt tcaggtcgct
      181 ggcggtatag atcagacgac catcaaccag cacttcgcca tctgccagac ccataatcag
      241 acgacgatta acaatgcgtt taaagtgaat acggtaggtc acttttttcg ctgtcggcag
      301 tacctgacca gtgaatttca cttcgccaac gcccagcgcg cggcctttac cttcgccgcc
      361 cagccagccg aggtagaacc ctactagctg ccacattgcg tccaggccca ggcatcccgg
      421 cataaccgga tcgccaatga agtggcatcc gaagaaccac agatccggat tgatatccag
      481 ttctgcttca acataccctt tgtcgaagtt accacccgtt tcggtcattt tgaccacacg
      541 gtccatcatc agcatgttcg gtgctggcaa ttgcgggcct ttagcgccaa acagttcacc
      601 gcgaccagag gcaagaaggt cttcttttgt ataggattcg cgtttatcta ccatgttctc
      661 tgtaagcctt attttattga agcacgcagg atagctaaca cgtgtacgct gaacaagtcc
      721 gatcagttcg gaataaacca gttcagccaa cgtaatggcc atggaaaacg gtgacgtcct
      781 tcctgttgcg atgcttgcgc gatacgttcc tggatggttt gcatcagcgt cgtttggcct
      841 tcgccatccc acaccagatt taataataac ggcagtgcgt cagtcacatc gtctactgcc
      901 cagatggtga atttgccttc ttctaccgct ttcaccagtt cactgtgaag acttaaatgg
      961 cgaacgttag ctgtggggat aatgacacct tgtttcccgg ttaactcacg ttgctggcaa
     1021 atagcaaaga agccttcgat tttctcattt aaaccaccga ccggctgggc gcgaccgaac
     1081 tgatcgactg aacctgtgat agcgatactc tgattcaccg gcacatcggc gagggcgctt
     1141 atcagggcgc agagttcagc catcgaggca ctatctccat caacttcact gtatgactgc
     1201 tcaaatgtca gcgatgctga gaaggggatc tgttgctcaa gctgtagttc cgacatcagg
     1261 aacgcttgca tgatcatcat ccctttcgca tggatattgc cgccaagttc cgctttgcgt
     1321 tcgatgtcgg tgaattcacc atcgccaata tgcacaacgc agctaatgcg agaaggttcg
     1381 ccaaaagcgc gtggatgacc cggaaattca atgaccgaaa gggcgttaat ttgcccgatg
     1441 cgttcgcctt cggtttcaat caggatttgc tcctgaagga tctcatcctg catacgttca
     1501 gcgaggaaac cttcgcgcca ttcacgctgc tgcagcatta agtttagctg ctcgccggag
     1561 aaggtgtcgc catcacacag ggaggcgacc tctttacact ggcggaggat ccactgcggg
     1621 ctaagcggaa gtgtttcttg ttcaccggtg tagcgtgctg cttcgcggat aagtaccggc
     1681 caggcatccg ctcccggggc aggtaagtga ttatgtctgg cggtaaatgt cacccagcga
     1741 caccactggc ttactgactc cgcatcgaca atctgcagag tatcttcaaa ttcgctataa
     1801 atagcctgct ctgaaagctc tggctccatc tcctggaaat cagccaatga ttcgcgttcg
     1861 cctaccagaa tgactttcag cttcaatggc atcgaaggca cagagacggg gagagggcgc
     1921 gactcatcaa acgcaaccca gtcaaaacgc tcgcggttaa cgatattttt cagccgcatc
     1981 cacagcagag gttgcgccag cagtgtacgc aaagagatga tgagaatacc gccatttgcc
     2041 tgatgcacca gaccaggctg cagggtaatg tcgccattaa actggcgcag gcagccaaag
     2101 agttgctccg cttctaccca gtcggcagcg acaacttgcg ttaaagtcgc aaaattatca
     2161 tctgcactca ctgcgtgacg taagcggatg gagtggccgg aaacctcata gtgatcgccc
     2221 accagttggc ctgcatcgct ttgtagcgta cgcgcggcat cggcaataag attcagatac
     2281 tcagactctt ccggggcctt agccagcata aaagaggagg atgctcgcgt atgcagcaac
     2341 tgctccagcg caaattgcag ccgcggttga gtatcactga ataaaggatc gttttcgtca
     2401 atcaaatgtg gctgagcaaa tatttcctga tagctatcgg tatcaggaac caggtcacgc
     2461 catgcaagtt tcgtaatggt caaagttgat gttttttagt ctgttgtcaa agccgcgatt
     2521 ataccgtaac cggcactaca gcacacgtag aaagcaccga caatactcct ggcatgggcg
     2581 ttaaagctca caggatggag attcttttct tcactggcct aaaaagctga tattctgtaa
     2641 agagttacac ggtaacattg agatcgctat gaaatatcaa caacttgaaa atcttgaaag
     2701 cggttggaaa tggaagtatc tggtgaagaa gcatcgcgaa ggggagttaa ttacccgtta
     2761 catagaagcc agtgccgccc aggaagccgt cgatgtgttg ctctcgctgg aaaatgaacc
     2821 cgtgctggta aatggctgga ttgacaagca tatgaatccg gaactggtca atcgcatgaa
     2881 gcaaaccatt cgtgccagac ggaagcgcca ttttaatgcg gaacaccagc atacgcgcaa
     2941 aaagtcgatc gatctggaat ttattgtctg gcaacgtctg gctggtcttg cgcagcgtcg
     3001 cggtaaaacg ctttctgaaa cgattgttca gctgattgaa gatgcggaaa acaaagagaa
     3061 atacgcgaat aaaatgtctt ctctgaagct ggatctgcag gcattgctgg gtaaggaata
     3121 actgacgaaa gtcagttcaa tttactaaag gcaaaaaaaa ccccgcagca gcggggtttt
     3181 tctaccagac gataacttaa gcctgcggct gagttacaac gtctttgata cctttaactt
     3241 cgatctctac gcgacgatcc ggagccaggc agtcgatcag tgcagcacgc tgtttcacgt
     3301 tgtcacaggt gttgccagta accgggttgg attcgcccat accacgtgcg gagatcttgt
     3361 ctgccgggat acctttggag atcaggtaat caacaacaga ctgagcacgg cgctcggaca
     3421 gaccctggtt gtaagcgtca gaaccgatgc ggtcggtgta acccagaaca actacggaac
     3481 cgtctttcgg atccaagttg ctcagctggc tgtacagctg atccagagca gcctgacctt
     3541 ccggtttcag ggttgctttg ttgaagttga acagaacgtc agacttcaga gtgaagtgct
     3601 tggtctgtac ttccggtgcc ggagctggag ccggagcaac tactggagct gcttcgccct
     3661 gaccgaaacg gtaggaaaca cccaggctca gcatgccgtt gtccggacga gtgccgatgg
     3721 tgtgtgcgtc accgatgttg ttggtccact ggtattccag acgggtagcg atttcaggag
     3781 tgatcgcgta ctcaacaccg ccagcgaaga ccggagaaac gccggtgtcg tggtttttac
     3841 cataaacgtt ggatttagtg tctgcacgcc ataccatacc acccagacga gtgtagatgt
     3901 ccaggtcgtc agtgattggg taacccagtt tagcggtcag ttgaacgccc tgagctttgt
     3961 atgcaccgtt ttcaacgctg cctttgtacg gcatacgacc taaccagtcg taacccattt
     4021 caaagccaac atacgggtta acctggtaac caccaaaagc accagcgccc agttggtttt
     4081 catgggtcgg gccattgttg ttgatgaaac cagtgtcatg gtactgggac cagcccagtt
     4141 tagcaccagt gtaccaggtg ttatctttcg gagcggcctg cgctacggta gcgaaaccag
     4201 ccagtgccac tgcaatcgcg atagctgtct ttttcatttt ttgcgcctcg ttatcatcca
     4261 aaatacgcca tgaatatctc caacgagata acacggttaa atccttcacc gggggatctg
     4321 ctcaatatta actctaccga tatcttcggc ttatgccgag cacccctggc gatgtaaagt
     4381 ctacaacgta gttgaaaact tacaagtgtg aactccgtta ggcatatgaa aaaaaagtct
     4441 tgtataaggt atgtttaatc ttttttgtca gcgacaattt acagaagaaa atcgcggaaa
     4501 ccgcttcaga caagcctccg caaggaaaat tagtcacgac tgaaagcatt ggctgggcga
     4561 caaaaaaagt tccaggatta atcctaaatt tacttaatga tacaaattag agtgaatttt
     4621 tagcccggaa agttgtctcg tggcgtgaga ggatgcgctt accggacgca taataaaccc
     4681 catagcgtta ccttcatttg ccgcatcaac aagttcagca tgctcttctt cagtcaaatc
     4741 atctgccaac caaccgatca ccacactgta attgcccgtg cgtaaagcgc gaaccattga
     4801 ctccacagtg tggcaagggg agagctggct aatctgcatt actttcgtta agggtagccc
     4861 agatgcctga acccattccc gactcagttt ttgttgcggt gttaaccaga gttgccagcg
     4921 cgattgctga ccgagttgct gtaacaatgg caacagtaga agttgcgtca tcatgggctg
     4981 atcttcgcga tagacaactt cactgataag cccggctgta gtgttttccg tagagacacg
     5041 cgcaatttta cttgctgcgg atgagaacga cgaagaacga tgtgcatagc ctgaagtgta
     5101 cataatcaat ccagcccctg taagctactg tatggatgta cagtacatcc agtgacaaca
     5161 aagatcaacc ctattttcgg aaagagcctc gcaaattttg tcgttggtga cgggaaaaca
     5221 taaattaatc ttgcccctta agaataagtt gcctattttc gtagttaacg gatccgttaa
     5281 tgtgaatcat tcttttatgt tatgatttta aaaggaattt tatgaaaagc ctctcctata
     5341 agcggatcta taaatcacaa gaatacctgg caacgttggg cacaattgaa taccgatcat
     5401 tgtttggcag ttacagcctg accgttgacg acacggtgtt tgcgatggtt tctgatggtg
     5461 agttgtatct tcgggcttgt gagcaaagtg cacagtactg tgtaaaacat ccgcctgtct
     5521 ggctgacata taaaaagtgt ggccgatccg ttaccctcaa ttactatcgg gttgatgaaa
     5581 gtctatggcg
//
LOCUS       DADMHM010000228         5572 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.233, whole genome shotgun sequence.
ACCESSION   DADMHM010000228 DADMHM010000000
VERSION     DADMHM010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5572)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5572)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5572
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.233"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            309..644
                     /locus_tag="JN125_003712"
     CDS             309..644
                     /locus_tag="JN125_003712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004856597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phnA family protein"
                     /protein_id="HAY8873329.1"
                     /translation="MSLPHCPKCNSEYTYEDNGMYICPECAYEWNDAEPAQESDELIV
                     KDANGNLLADGDSVTIIKDLKVKGSSSMLKIGTKVKNIRLVEGDHNIDCKIDGFGPMK
                     LKSEFVKKN"
     gene            804..1247
                     /gene="yjdN"
                     /locus_tag="JN125_003713"
     CDS             804..1247
                     /gene="yjdN"
                     /locus_tag="JN125_003713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family metalloprotein YjdN"
                     /protein_id="HAY8873330.1"
                     /translation="MPLSPYLSFAGNCSDAIAYYQRTLGAELLYKISFGEMPKSAQDS
                     AENCPSGMQFPDTAIAHANVRIAGSDIMMSDAIPSGKASYSGFTLVLDSQQVEEGKRW
                     FDNLAANGKIEMAWQETFWAHGFGKVTDKFGVPWMINAVKQQPTQ"
     gene            1380..2167
                     /gene="phnC"
                     /locus_tag="JN125_003714"
                     /pseudo
     CDS             1380..2167
                     /gene="phnC"
                     /locus_tag="JN125_003714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709835.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate ABC transporter ATP-binding protein"
     gene            2192..3208
                     /gene="phnD"
                     /locus_tag="JN125_003715"
     CDS             2192..3208
                     /gene="phnD"
                     /locus_tag="JN125_003715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY8873331.1"
                     /translation="MNAKIIASLAFTSMFSLSTLLSPAHAEEQEKALNFGIISTESQQ
                     NLKPQWTPFLQDMEKKLGVKVNAFFAPDYAGIIQGMRFNKVDIAWYGNLSAMEAVDRA
                     NGQVFAQTVAADGSPGYWSVLIVNKDSPINNLNDLLAKRKDLTFGNGDPNSTSGFLVP
                     GYYVFAKNNISASDFKRTVNAGHETNALAVANKQVDVATNNTENLDKLKTSAPEKLKE
                     LKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERLGWAPFRASS
                     DLQLVPIRQLALFKEMQGVKSNKGLNEQDKLAKTTEIQAQLDDLDRLNNALSAMSSVS
                     KAVQ"
     gene            3334..4113
                     /gene="phnE"
                     /locus_tag="JN125_003716"
     CDS             3334..4113
                     /gene="phnE"
                     /locus_tag="JN125_003716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313113.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate ABC transporter, permease protein
                     PhnE"
                     /protein_id="HAY8873332.1"
                     /translation="MQTITIAPPKRSWFSLLSCAVVLAVLVVSWQGAEMAPLTLIKDG
                     GNMATFVADFFPPDFSQWQDYLTEMAVTLQIAVWGTALAVVLSIPFGLMSAENLVPWW
                     VYQPVRRLMDACRAINEMVFAMLFVVAVGLGPFAGVLALFIHTTGVLSKLLSEAVEAI
                     EPGPVEGIRATGANKLEEILYGVLPQVMPLLISYSLYRFESNVRSATVVGMVGAGGIG
                     VTLWEAIRGFQFQQTCALMVLIIVTVSLLDFLSQRLRKHFI"
     gene            4134..4859
                     /gene="phnF"
                     /locus_tag="JN125_003717"
     CDS             4134..4859
                     /gene="phnF"
                     /locus_tag="JN125_003717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate metabolism transcriptional regulator
                     PhnF"
                     /protein_id="HAY8873333.1"
                     /translation="MHLSTHPTSYPTRYQEIAAKLEQELRQHYRCGDYLPVEQQLAAR
                     FEVNRHTLRRAIDQLVEKGWVQRRQGVGVLVLMRPFDYPLNAQARFSQNLLDQGSHPT
                     SEKLLSVLRPASGHVADALGITEGENVIHLRTLRRVNGIALCLIDHYFADLTLWPTLQ
                     RFDSGSLHDFLREQTGIALRRSQTRISARRAQAKECQRLEIPNMSPLLCVRTLNHRDG
                     ESSPAEYSVSLTRADMIEFTMEH"
     gene            4860..5312
                     /gene="phnG"
                     /locus_tag="JN125_003718"
     CDS             4860..5312
                     /gene="phnG"
                     /locus_tag="JN125_003718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphonate C-P lyase system protein PhnG"
                     /protein_id="HAY8873334.1"
                     /translation="MHADIATRQHWMSVLAHSQPAELAARLNALNITANYEVIRTAET
                     GLVQIQARMGGTGERFFAGDATLTRAAVRLTDGTLGYSWVLGRDKQHAERCALIDALM
                     QQSRHFQNLSETLIAPLDADRMARIAARQAEVNASRVDFFTMVRGDNA"
     gene            5309..>5572
                     /gene="phnH"
                     /locus_tag="JN125_003719"
     CDS             5309..>5572
                     /gene="phnH"
                     /locus_tag="JN125_003719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-phosphorus lyase subunit PhnH"
                     /protein_id="HAY8873335.1"
                     /translation="MTLETAFMLPVQDAQHSFRRLLKAMSEPGVIVALHQLKRGWQPL
                     NIATTSVLLTLADNDTPVWLSAPLSNDIVSQSLRFHTNAPLVNQ"
BASE COUNT         1313 a         1641 c         1460 g         1158 t
ORIGIN      
        1 aattttatat ttagtgtgtt gttttttatc agaataaata acgtcttctg atgcgtttaa
       61 aacgtcagaa agataaaaat atcatgtgaa taaaaaaaag aacaagtaga gcattaacat
      121 tatcttaaat aataaataga ggcaaaaaga ttattttctt tttgcgtttc ctttcaaatg
      181 aaaacgatcg tcgtctaaaa tcagcagtac ccccgacaaa ctcagggagt ttgtgtataa
      241 ttgcggcctt tttcggcaat ctgccgtttt ttggcgcttt tgccctgctg acttttgagg
      301 aaatccacat gtcattacca cactgcccaa aatgcaactc cgaatacact tacgaagata
      361 acggcatgta catctgcccg gaatgtgcct acgaatggaa cgacgcagaa cctgcacagg
      421 aaagcgacga gctgatcgtt aaagatgcta acggcaatct gctggctgac ggcgacagcg
      481 ttaccatcat taaagatctg aaggtgaaag gtagctcttc gatgctgaaa attggcacca
      541 aagtgaaaaa catccgcctg gttgaaggcg accataacat cgattgcaaa atcgacggtt
      601 ttggtccgat gaaactgaaa tctgagtttg tgaaaaagaa ctgattgtat tgtgatcggt
      661 aagccggata aggcgctcgc gccacatccg gcaacgatgc cgactgcctg atgcgacgct
      721 gaccgcgcct tatcaggctt ccctctcatc tgtataaatt tcgaactaca cttaactggc
      781 ttctcttaac tgaggtcacc atcatgccgt taagtcccta cctctctttt gccggtaact
      841 gttccgacgc gattgcctat tatcaacgta cgttgggcgc ggaactgctc tataaaatca
      901 gcttcggcga aatgccaaaa tcagcgcagg acagcgccga gaactgccct tccggaatgc
      961 aatttcccga taccgccatc gcccacgcca acgtgcgcat tgccggaagc gacatcatga
     1021 tgagcgatgc tataccgtca ggaaaagcca gctactccgg ctttacgctg gtgctcgatt
     1081 cgcaacaggt cgaagaagga aaacgctggt ttgataacct tgccgctaac ggaaaaattg
     1141 aaatggcctg gcaggaaact ttctgggcgc atggcttcgg caaagtcacc gataaatttg
     1201 gcgtaccgtg gatgattaat gccgtcaaac aacaaccaac gcaataaccc gccgggaggc
     1261 ccgccctccc gcactgtcat cgaattcccg ttaactcttc atctgttagt cacttttaat
     1321 taaccaaatc gtcacaataa tccgccacga tggagccact tttttaggga ggctgcatca
     1381 tgcaaacgat tatccgtgtc gagaagctcg ccaaaacctt caatcagcat caagcgctgc
     1441 atgcggttga tctgaacatt catcacagtg aaatggtggc tctgcttggg ccgtcgggtt
     1501 ccggcaaatc cacactttta cgtcacttaa gcggtttgat taccggcgat aaatccgccg
     1561 gcagccatat cgagctgctg ggccgacagt ccagcgcgaa ggccgtctgg cgcgcgatat
     1621 ccgcaaaagc cgcgcccata ccggctacat cttccaacaa ttcaacctgg tgaatcgcct
     1681 gagcgtactg gagaacgtgc tgattggcgc gctcggcagc acgccgttct ggcgcacctg
     1741 ttttagctgg ttcacccgcg agcagaaaca acgcgcgtta caggcgctga cccgcgttgg
     1801 catggtgcat tttgcccatc aacgcgtttc caccctctcc ggcggacagc agcagcgtgt
     1861 ggcgattgcc cgcgcgctga tgcagcaggc gaaggtgatt ctggccgatg aacccatcgc
     1921 ctcgctggac ccggaatccg cccgcatcgt gatggacacc ctgcgcgaca tcaatcagaa
     1981 cgacggcatc accgtagtcg tcacgctgca tcaggtggat tacgccctgc gctactgcga
     2041 acgcatcgtc gccctgcgcc aggggcacgt tttctacgac ggcagcagcc aacagtttga
     2101 taacgaacgt tttgaccatc tctaccgcag cattaatcgc atcgaagaga acgcgaaagc
     2161 tgcctgacat ccccatcatt gaggaaaacg aatgaacgct aagataattg cctcgctggc
     2221 cttcaccagc atgttcagcc tcagcaccct gttaagcccg gcacacgccg aagagcagga
     2281 aaaggcgctg aatttcggca ttatttcaac ggaatcacag caaaacctga aaccgcaatg
     2341 gacgccattc ttacaggata tggagaagaa gctgggcgtg aaggtgaacg ccttctttgc
     2401 cccagactac gcaggcatta tccagggaat gcgcttcaat aaagtggata tcgcctggta
     2461 cggcaacctg tcggcaatgg aagcggtgga tcgcgccaac ggccaggtct tcgcccagac
     2521 ggtcgcggcg gatggatcgc caggttactg gagcgtgttg atcgtcaaca aagatagtcc
     2581 gatcaacaac ctgaacgatc tgctggcgaa gcggaaagat ctcaccttcg gcaatggcga
     2641 tcctaactcc acctctggct tcctcgtccc cggttactac gtctttgcca aaaacaatat
     2701 ctccgccagc gactttaagc gcaccgtcaa cgctgggcat gaaaccaacg cgctggccgt
     2761 cgccaacaag caggtggatg ttgccaccaa caacaccgaa aacctcgaca agctgaaaac
     2821 ctccgcgcca gagaagctga aagaactgaa ggtgatctgg aagtcgccgc tgatcccagg
     2881 cgatccgatc gtctggcgca agaatctctc cgaaaccacc aaagacaaga tctacgactt
     2941 ctttatgaac tacggaaaaa cgccggaaga gaaagcggtg ctggaacgcc tgggctgggc
     3001 cccgttccgc gcctccagcg acctgcaact ggtgccgatt cgccagctcg cactgtttaa
     3061 agagatgcag ggcgtaaaaa gcaataaagg actgaatgag caggacaagc tggcgaaaac
     3121 caccgagatt caggcgcagc tggatgacct ggaccgcctg aacaacgcgt taagcgcgat
     3181 gagttcggtg agtaaagcgg tgcagtaatg tgctcgatcg gtcccctatc ccttgaggga
     3241 gagggttagg gtgaggggga aatgcgcacg ctgatgccct catcccggcc ctctcccaca
     3301 gggagaggga gaaaacatta aacggagcca aacatgcaaa ccatcaccat cgccccaccc
     3361 aagcgtagct ggttctcgct tctgagctgt gccgttgttc tcgccgtgct ggtcgtctcg
     3421 tggcagggcg cggaaatggc cccgcttacg ctgattaaag acggcggcaa catggcaacc
     3481 ttcgttgccg acttcttccc gcccgatttc agccagtggc aggattacct caccgaaatg
     3541 gccgtcacgc tgcaaatcgc cgtctggggc accgcgctgg cagtggttct ctccatcccc
     3601 ttcggtctga tgagcgccga aaacctggtg ccgtggtggg tttaccagcc cgttcgccgc
     3661 ctgatggatg cctgccgcgc cattaacgaa atggtcttcg ccatgctgtt cgtggtcgcc
     3721 gtcggtctcg gcccgttcgc tggcgtgctg gcgctattta tccacaccac cggcgtgctc
     3781 tccaagctgc tttccgaagc ggtggaagcg atcgaacccg gcccggtaga aggcattcgc
     3841 gccaccggcg ccaacaagct ggaagagatc ctttacggcg tgctgccaca ggtaatgccg
     3901 ctgctgatct cctactccct ctatcgcttc gaatccaacg tccgctcggc gaccgtcgtc
     3961 ggcatggtcg gtgcaggcgg gatcggcgtc accctgtggg aagcgattcg cggttttcag
     4021 ttccaacaaa cctgcgccct gatggtgctt atcatcgtca cggtcagcct gctggatttc
     4081 ctctctcaac ggttgcgtaa gcactttatc tgataagcga ggcattgata tctatgcact
     4141 tgtctacaca tccgaccagc tacccaacac gctatcagga gatagccgca aaacttgagc
     4201 aggagcttcg tcaacactat cgctgcggcg actatcttcc cgtcgagcag cagctggcgg
     4261 cgcgctttga ggtaaatcgc cacaccctgc gccgcgccat cgaccaactg gtggaaaaag
     4321 gctgggtaca gcgccgtcag ggcgtcggcg tgctggtgct gatgcgcccg ttcgattacc
     4381 cgctcaacgc ccaggcgcgt tttagccaga acctgctgga tcagggcagc catcccacca
     4441 gcgaaaaact gctgtcggtg ctgcgcccgg catctggtca cgtcgctgac gcgctgggga
     4501 taaccgaggg ggagaacgtc atccacctgc gcaccctgcg ccgggtcaac ggcatcgcgc
     4561 tctgtttaat cgaccactac tttgcggacc tcaccctttg gccgacgctg caacgcttcg
     4621 acagcggctc gctgcacgat tttctgcgcg agcaaaccgg gattgcgctg cgccgcagcc
     4681 agacgcggat cagcgcccgc cgcgcccagg ccaaagagtg ccagcgtctt gaaatcccga
     4741 atatgtcgcc gctgctgtgc gtgcgcaccc ttaaccaccg tgacggtgaa agcagcccgg
     4801 cggagtactc cgtcagcctg acgcgcgccg acatgattga attcactatg gagcactgaa
     4861 tgcacgcaga tatcgcgacc cgccagcact ggatgtccgt gctggcgcac agccaaccgg
     4921 ctgaactggc agcccgcctg aacgcgctga acatcaccgc caactatgaa gtgatccgca
     4981 ccgccgaaac cggcctggta cagattcagg cgcgaatggg cggtaccggc gaacgctttt
     5041 ttgccggcga cgccacgctg acccgcgccg ccgtacgcct gactgacggc accctcggct
     5101 acagctgggt gctggggcgc gacaaacagc acgccgaacg ctgcgcgctg attgacgcgt
     5161 tgatgcagca atctcgccat tttcaaaact tatcagaaac ccttattgcc ccactggacg
     5221 ctgaccgtat ggcacgcatt gccgcacgcc aggccgaagt gaacgccagc cgggtcgact
     5281 tctttacgat ggttcgcgga gacaacgcat gaccctggaa accgctttta tgcttcctgt
     5341 gcaggatgcc cagcacagtt ttcgtcgcct gttaaaggcc atgagcgagc cgggcgtgat
     5401 tgtcgccctg catcagctca aacgcggctg gcagccgctg aatatcgcca ccaccagcgt
     5461 gctgctgacg ctggctgata acgacacgcc ggtgtggctt tccgcgccat taagtaacga
     5521 tatcgtcagc cagagcctgc gttttcatac caacgcgccg ctggtcaatc ag
//
LOCUS       DADMHM010000229         5544 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.234, whole genome shotgun sequence.
ACCESSION   DADMHM010000229 DADMHM010000000
VERSION     DADMHM010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5544)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5544)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5544
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.234"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            157..1731
                     /gene="nikA"
                     /locus_tag="JN125_003720"
     CDS             157..1731
                     /gene="nikA"
                     /locus_tag="JN125_003720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel ABC transporter, nickel/metallophore
                     periplasmic binding protein"
                     /protein_id="HAY8873336.1"
                     /translation="MLSTLHRTLFALLACASFIVHAAAPDEITTAWPVNVGPLNPHLY
                     TPNQMFAQSMVYEPLVKYQADGSVIPWLAKSWTHSEDGKTWTFTLRDDVKLSNGEPFD
                     AEAAAENFRAVLDNRQRHAWLELANQIVDVKALSKTELQITLKSAYYPFLQELALPRP
                     FRFIAPSQFKNHETMNGIKAPIGTGPWILQESKLNQYDVFVRNENYWGEKPAIKKITF
                     NVIPDPTTRAVAFETGDIDLLYGNEGLLPLDTFARFSQNPAYHTQLSQPIETVMLALN
                     TAKTPTNELAVREALNYAVNKKSLIDNALYGTQQVADTLFAPSVPYANLGLKPRQYDP
                     QKAKALLEKAGWTLPAGKDIREKNGQPLRIELSFIGTDALSKSMAEIIQADMRQIGAD
                     VSLIGEEESSIYARQRDGRFGMIFHRTWGAPYDPHAFLSSMRVPSHADFQAQQGLADK
                     PLIDKEIGEVLATHDETQRQALYRDILTRLHDEAVYLPISYISMMVVSKPELGNIPYA
                     PIATEIPFEQIKPVKP"
     gene            1731..2675
                     /gene="nikB"
                     /locus_tag="JN125_003721"
     CDS             1731..2675
                     /gene="nikB"
                     /locus_tag="JN125_003721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel ABC transporter permease subunit NikB"
                     /protein_id="HAY8873337.1"
                     /translation="MLRYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYLRLSNL
                     PPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATL
                     ELAGAALVLILLTSVPFGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSV
                     YLQWLPAMGYGGWQHIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLND
                     KQTERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPV
                     IQCFTLMMVVVFVVCNLIVDLLNAALDPRIRRHEGAHA"
     gene            2672..3505
                     /gene="nikC"
                     /locus_tag="JN125_003722"
     CDS             2672..3505
                     /gene="nikC"
                     /locus_tag="JN125_003722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel ABC transporter permease subunit NikC"
                     /protein_id="HAY8873338.1"
                     /translation="MNFFLSSRWSVRLALIIIALLALIALTSQWWLPYDPQAIDLPSR
                     LLSPDAQHWLGTDHLGRDIFSRLMAATRVSLGSVMACLLLVLTLGLVIGGSAGLIGGR
                     VDQATMRVADMFMTFPTSILSFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISL
                     RQREFVLASRLSGAGHVRVFVDHLAGAVIPSLLVLATLDIGHMMLHVSGMSFLGLGVT
                     APTAEWGVMINDARQYIWTQPLQMFWPGLALFISVMAFNLVGDALRDHLDPHLVTEHA
                     H"
     gene            3505..4269
                     /gene="nikD"
                     /locus_tag="JN125_003723"
     CDS             3505..4269
                     /gene="nikD"
                     /locus_tag="JN125_003723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel import ATP-binding protein NikD"
                     /protein_id="HAY8873339.1"
                     /translation="MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSL
                     TCAATLGILPAGVRQTAGEILADGKAVYPCALRGIKIATIMQNPRSAFNPLHTMHTHA
                     RETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
                     FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGK
                     IVEQGDVETLFNAPKHTVTRSLVSAHLALYGMELVS"
     gene            4266..5072
                     /gene="nikE"
                     /locus_tag="JN125_003724"
     CDS             4266..5072
                     /gene="nikE"
                     /locus_tag="JN125_003724"
                     /EC_number="7.2.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel import ATP-binding protein NikE"
                     /protein_id="HAY8873340.1"
                     /translation="MTLLNVSGLSHHYAHGGFSGKHQHQAVLNNVSLTLKSGETVALL
                     GRSGCGKSTLARLLVGLESPSQGNISWRGESLAKLNRAQRKAFRRDIQMVFQDSISAV
                     NPRKTVREILREPMRHLLSLKKSEQLARASEMLKAVDLDDSVLDKRPPQLSGGQLQRV
                     CLARALAVEPKLLILDETVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERF
                     CQRVMVMDNGQIVETQAVGDKLTFSSDAGRVLQNAVLPAFPVRRRATEKV"
     gene            5078..5479
                     /gene="nikR"
                     /locus_tag="JN125_003725"
     CDS             5078..5479
                     /gene="nikR"
                     /locus_tag="JN125_003725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-responsive transcriptional regulator
                     NikR"
                     /protein_id="HAY8873341.1"
                     /translation="MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEA
                     TQQHGTQGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLK
                     GDMGDVQHFADDVIAQRGVRHGHLQCLPKED"
BASE COUNT         1174 a         1589 c         1521 g         1260 t
ORIGIN      
        1 tacgctcacc gccgacagtg tgcaatggat cgattcagtt aactgatccg cccacccgac
       61 tgcccatcta ttgatccaga acaggtaata agtatgacga atacttaaaa tcgtcatact
      121 tatttccgcc atctatttta atccattggg gttatcatgc tctccacact ccaccgcact
      181 ctatttgcgc tgctggcttg tgcgtctttt atcgtccatg ccgctgcacc agatgaaatc
      241 actaccgcct ggccggtgaa tgtcgggcca ctaaacccgc acctttacac gcctaaccag
      301 atgttcgccc agagcatggt ttatgaacca ttggtgaaat atcaggcaga cggttcggtg
      361 atcccgtggc tggcaaaaag ctggactcat tcagaagatg gtaaaacctg gaccttcacc
      421 ctgcgtgatg acgtgaaatt atccaacggt gaaccgttcg atgccgaggc ggcggcagaa
      481 aacttccgcg cagtgctcga taaccgtcaa cgtcacgcct ggctggagct ggcaaaccag
      541 attgttgatg ttaaagcact cagtaaaaca gagctgcaaa ttaccctgaa aagcgcctac
      601 tatcctttcc tgcaagaact ggccctgccc cgtcctttcc gttttatcgc tccctcgcag
      661 tttaaaaacc atgaaaccat gaacggaatt aaagcgccga ttggcaccgg accgtggatt
      721 ttgcaggaat cgaaactgaa tcagtacgat gtcttcgtcc gtaacgaaaa ctactggggc
      781 gaaaagccag cgattaaaaa gatcaccttt aacgtcatcc cggacccgac tacccgcgcg
      841 gtggcgtttg aaactggcga tatcgacctg ctgtacggaa acgaagggtt attaccgctc
      901 gataccttcg cccgctttag ccagaacccg gcttaccata cccaactgtc acagccgatc
      961 gaaaccgtga tgctggcgct taataccgcc aaaaccccca ccaatgagct ggcagtacgt
     1021 gaagctctta attacgcggt aaacaaaaaa tcgctgattg ataacgcgtt gtatggcacc
     1081 cagcaggtcg ccgacaccct gtttgcccct tctgtgccct acgccaacct cggcctgaaa
     1141 ccgcgccagt acgatccgca gaaagcgaaa gcgttgctgg aaaaagccgg ttggacgctg
     1201 cctgcgggca aagacatccg cgagaaaaat ggtcagccgc tgcgcattga actgtcgttc
     1261 atcggcaccg atgcgttaag caaatcgatg gcggaaatca ttcaggctga tatgcgccag
     1321 attggcgcag atgtctcgct gattggcgaa gaagagagca gtatctatgc tcgtcagcgc
     1381 gacggtcgtt ttggcatgat tttccaccgc acctggggcg cgccatacga tccacacgcc
     1441 ttcctgagtt caatgcgcgt accgtcgcac gctgacttcc aggcacagca aggattagcc
     1501 gacaaaccgc tgattgataa agagatcggc gaagtgctgg cgacccatga cgaaacgcaa
     1561 cgtcaggcgc tgtatcgcga cattctgacc cgtctgcatg acgaggcggt ttatctgcct
     1621 atcagttaca tctcaatgat ggtggtatca aaaccggagc tgggtaacat cccctacgcg
     1681 ccgatcgcca ccgaaattcc gttcgaacag attaaaccgg tgaaacctta atgttgcgtt
     1741 acgtattacg ccgctttctg ctgctgatcc cgatggtgct cgccgcctcg gtgatcattt
     1801 ttctgatgct gcgcctcggt accggcgacc cggcgctcga ttatttgcgt ctgtctaacc
     1861 tgccgccgac gccggagatg ctggcctcta cccgcaccat gctcggactg gatcagccgc
     1921 tgtacgtcca gtacggcacc tggttgtgga aggcgctgca tcttgacttt ggtatctcat
     1981 tcgccagcca acgcccggtg ctggacgata tgctgaactt cctgcccgcc acgctggaac
     2041 ttgcaggtgc ggcgctggta ttaattctgc tcacttccgt accgttcggt atctgggcgg
     2101 cgcgccaccg cgatcgtttg ccggatttcg ccgtgcgctt tatcgcgttt cttggcgtgt
     2161 cgatgcccaa cttctggctg gcatttttgc tagtgatggc gttttcggtg tatctgcaat
     2221 ggctacccgc gatgggctac ggcggctggc agcacatcat tttgcctgcg gtttccatcg
     2281 cctttatgtc gctggcgatt aacgcgcgac tgctgcgcgc cagtatgctg gacgtcgccg
     2341 gtcagcgtca cgtcacctgg gcgcggctac gcggcctgaa tgacaaacag accgaacgcc
     2401 gccatattct gcgcaatgcc tcgctgccga tgatcaccgc cgtggggatg cacattggcg
     2461 aattgattgg cgggacgatg attatcgaaa acatctttgc ctggcctggc gtcgggcgct
     2521 atgcggtgtc ggcgattttt aaccgtgact atccggtgat tcagtgcttt acgctgatga
     2581 tggtggtggt ttttgtggtc tgtaatttga ttgtcgattt gctcaacgcc gcgctggacc
     2641 cgcgcattcg tcgtcatgaa ggagcgcacg cgtgaacttt ttcctctctt cccgctggtc
     2701 ggtacgcctg gcgctgatca ttatcgccct gctggcgctg attgcgctca ccagccagtg
     2761 gtggctgccg tatgaccccc aggcgattga tttgccgtcg cgcctgcttt cgccggatgc
     2821 gcagcactgg ctgggcaccg atcacttagg tcgcgatatt ttctcgcggc tgatggcagc
     2881 gacccgcgtg tcgctcggtt cggtaatggc ctgcctgctg ctggtgctga cattagggct
     2941 ggttattggc ggcagcgccg ggttgattgg cgggcgcgtt gatcaggcca ccatgcgcgt
     3001 cgccgatatg tttatgacct tcccgacctc gattctgtcg ttctttatgg ttggcgtgct
     3061 cggcaccggg ctgaccaacg taattatcgc catcgccctg tcgcactggg cgtggtatgc
     3121 acgcatggtg cgcagcctgg tgatttcact acgccaacgc gagtttgtgc tggcgtcacg
     3181 gctttccggt gcgggccatg tgcgagtgtt tgtcgatcat ctggcaggcg cggtgatccc
     3241 ttcgctgctg gtgctggcaa cgctggatat cggccatatg atgctgcacg tctcggggat
     3301 gtctttcctt ggcctcggtg tgaccgcgcc gaccgccgaa tggggcgtga tgattaacga
     3361 cgcgcgccag tatatctgga cccagccgct gcaaatgttc tggccggggc tggcgctgtt
     3421 tatcagcgtg atggccttta acctggtggg tgacgcactg cgcgatcatc tggaccctca
     3481 tctggtgacg gagcacgcac actaatgccg caacagattg aactacgtaa tatcgcgcta
     3541 caggccgcgc agccgctggt acacggtgta tcgttaaccc tgcaacgcgg gcgcgtgctg
     3601 gcgttagtcg gcggtagcgg cagcgggaaa tcattaacct gcgccgcgac gctgggcatt
     3661 ttgcccgctg gcgttcgcca gacggcgggg gaaattttag ccgatggcaa agcggtttat
     3721 ccctgcgccc tgcgcggcat caaaattgcc accatcatgc agaacccgcg cagcgccttt
     3781 aatccgctac acaccatgca cacccacgcg cgggaaacct gcctggcgtt agggaaaccc
     3841 gccgatgacg ctacgcttac cgctgccata gaagcggtgg ggctggaaaa cgccgcgcgc
     3901 gtgctgaagc tgtacccgtt cgagatgagc ggcggcatgt tgcagcgcat gatgattgcg
     3961 atggcggtgc tgtgtgaatc accgtttatc atcgcagatg aaccgaccac cgacctcgac
     4021 gtggtagcac aggcgcgcat cctcgatctg ctggaaagca ttatgcaaaa acaagcgccg
     4081 ggaatgctgc tggtcaccca tgatatgggc gttgtggcgc gtctggcgga tgacgtggcg
     4141 gtgatgtcac aaggtaaaat tgtcgaacag ggcgatgtag aaacgctgtt taacgccccc
     4201 aaacatacgg tgacgcgcag cctggtttcc gctcatctcg ccctctacgg tatggagctg
     4261 gtatcatgac cttacttaac gtcagcggcc tttcccatca ctatgcccac ggtggattta
     4321 gcggaaaaca tcaacatcag gcggtgctga ataacgtttc cctgaccctg aaaagcggcg
     4381 aaaccgtcgc cctgctggga cgcagcggct gcggaaaaag caccctcgcg cggctgctgg
     4441 taggcttaga gtctccctca caagggaata ttagctggcg cggcgaatcg ctggcgaaac
     4501 ttaatcgcgc ccaacgtaaa gccttccgcc gtgatattca gatggtgttt caggactcca
     4561 tcagtgccgt gaatccgcgc aaaaccgtgc gcgagatcct gcgtgaaccg atgcgccacc
     4621 tgctatcact gaaaaaatcc gaacaactgg cgcgcgccag cgaaatgctg aaggcggtcg
     4681 atctcgatga cagcgttctc gacaaacgcc caccgcagtt aagcggcggc cagctccagc
     4741 gcgtctgcct agcacgcgcg ctggcggtcg aaccgaaatt gctgattctg gatgaaaccg
     4801 tttctaacct tgatctcgtg ttacaggcgg gcgtcattcg cctgctgaaa aagctgcaac
     4861 aacagtttgg caccgcctgc ctgttcatca cccacgactt acgtcttgta gaacgctttt
     4921 gccagcgggt gatggtgatg gacaacggac aaatcgtcga aacccaggcg gtgggagata
     4981 aattaacctt ttcctctgac gccggacgtg tgctacaaaa cgcggtatta cccgcattcc
     5041 ccgtgcgccg tcgcgccaca gaaaaggttt aacgcaaatg caacgagtca ccatcacgct
     5101 tgatgacgat ttactggaga cgctggacag cctgagccag cgtcgtggtt ataacaaccg
     5161 ttccgaagct atccgcgata ttctgcgtag cgccctggcc caggaggcca ctcagcagca
     5221 cggcacgcaa ggtttcgcgg tgctctccta tgtgtatgaa cacgaaaaac gcgacttagc
     5281 cagccgcatt gtctccaccc agcaccatca ccacgatctc tccgtcgcca cgctgcatgt
     5341 gcatatcaat cacgacgact gtctggaaat cgccgtgctg aaaggtgata tgggcgacgt
     5401 gcagcatttt gccgatgacg ttatcgccca gcgcggcgtg cggcatgggc atttgcagtg
     5461 cttgccgaag gaagattgag ttatttctga aacgaggaaa gaaaagatat taactgaact
     5521 taatttataa aattaagttc agtt
//
LOCUS       DADMHM010000230         5512 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.235, whole genome shotgun sequence.
ACCESSION   DADMHM010000230 DADMHM010000000
VERSION     DADMHM010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5512)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5512)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5512
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.235"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..1046)
                     /locus_tag="JN125_003726"
     CDS             complement(<1..1046)
                     /locus_tag="JN125_003726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708400.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein"
                     /protein_id="HAY8873342.1"
                     /translation="MREINMLRNISSCLFPHISTITSPNHYLSEWDDWEKQGLPEEQR
                     TEAVRRLRACLTSKGHKLDLRALALSSLPVLPACIKKLDVSCNKLTILTDLPENIKEL
                     IARDNFLTHISALPHYLITLDVSENQLENLPLLPDTIKSLSAEYNRLSTLPSLPLNLK
                     KLEVRNNELQTLPSLPSNLKILKVAHNHLTELPPLPRRLQLLFAYSNRLSNLPNIQEN
                     IIMRRFFYFENNQITTIPTNLFRLDPHITIEIANNPLSDQTLLFLIQQTSVPNFNGPQ
                     FRISLSDQNRLFLRQMLPQNLHSRHIRVITEGGQNFQIPPLPETVAAWFPEADRREVS
                     TQWTSFSTEENSRA"
     gene            1537..1647
                     /locus_tag="JN125_003727"
     CDS             1537..1647
                     /locus_tag="JN125_003727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA invertase"
                     /protein_id="HAY8873343.1"
                     /translation="MLIGYVRVSTNDQNTDLRRNALNCAGYELIVERMGA"
     gene            1927..2922
                     /gene="pgl"
                     /locus_tag="JN125_003728"
     CDS             1927..2922
                     /gene="pgl"
                     /locus_tag="JN125_003728"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HAY8873344.1"
                     /translation="MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVS
                     PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSPTHISTDHQGQFVFVGSYN
                     AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG
                     HLVAQDPAEVTTIEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL
                     DIMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ
                     PRGFNVDHSGKYLIAAGQKSHLISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH"
     gene            complement(2963..3916)
                     /locus_tag="JN125_003729"
     CDS             complement(2963..3916)
                     /locus_tag="JN125_003729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308823.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY8873345.1"
                     /translation="MKHELSSMKAFVILAESSSFNNAAKLLNITQPALTRRIKKMEED
                     LHIQLFERTTRKVTLTKAGKRLLPEARELIKKFDETLFNIRDMNAYHRGMVTLACIPT
                     AVFYFLPLAIGKFNELYPNIKVRILEQGTNNCMESVLCNESDFGINMNNVTNSSIDFT
                     PLVNEPFVLACRRDHPLAKKQLVEWQELVGYKMIGVRSSSGNRLLIEQQLADKPWKLD
                     WFYEVRHLSTSLGLVEAGLGISALPGLAMPHAPYSSIIGIPLVEPVIRRTLGIIRRKD
                     AVLSPAAERFFALLINLWTDDKDNLWTNIVERQRHALQEIG"
     gene            4100..5152
                     /locus_tag="JN125_003730"
     CDS             4100..5152
                     /locus_tag="JN125_003730"
                     /EC_number="5.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalomesaconate tautomerase"
                     /protein_id="HAY8873346.1"
                     /translation="MKKIPCVMMRGGTSRGAFLLAEHLPEDQTQRDKILMAIMGSGND
                     LEIDGIGGGNPLTSKVAIISRSSDPRADVDYLFAQVIVHEQRVDTTPNCGNMLSGVGA
                     FAIENGLIAATSPVTRVRIRNVNTGTFIEADVQTPNGVVEYEGSARIDGVPGTAAPVA
                     LTFLNAAGTKTGKVFPTDNQIDYFDDVPVTCIDMAMPVVIIPAEYLGKTGYELPAELD
                     ADKALLACIESIRLQAGKAMGLGDVSNMVIPKPVLISPAQKGGAINVRYFMPHSCHRA
                     LAITGAIAISSSCALEGTVTRQIVPSVGYGNINIEHPSGALDVHLSNEGQDATTLRAS
                     VIRTTRKIFSGEVYLP"
     gene            5228..>5512
                     /locus_tag="JN125_003731"
     CDS             5228..>5512
                     /locus_tag="JN125_003731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873347.1"
                     /translation="MNKKSLWKLILILAIPCIIGFMPAPAGLSELAWVLFGIYLAAIV
                     GLVIKPFPEPVVLLIAVAASMVVVGNLSDGAFKTTAVLSGYSSGTTWLVFS"
BASE COUNT         1451 a         1139 c         1321 g         1601 t
ORIGIN      
        1 aatgcccggg aattctcctc ggtggaaaaa gaagtccatt gtgtagaaac ctcccgacga
       61 tctgcttcag gaaaccaggc tgccacagtt tcgggaagag gggggatctg aaagttctgc
      121 cccccttcag tgatgactct gatatggcgc gaatgtaaat tttgcggcaa catctggcgt
      181 aaaaacagtc tgttttggtc tgacagggaa atacgaaact gaggcccgtt aaaatttgga
      241 accgaagttt gctgtattaa gaatagcaga gtttgatctg ataaggggtt atttgcaatc
      301 tcaatagtta tatgaggatc taaacgaaaa agatttgtcg ggattgtagt tatttggttg
      361 ttttcaaaat aaaaaaatct tctcatgata atattttctt ggatgtttgg taagttgctt
      421 aatctattgc tatatgcaaa aagaagttgc agtctcctag gtaaaggggg cagttcagta
      481 agatggttgt gcgcaacctt aagtatctta agattagaag gcagagatgg aagagtttgc
      541 agttcgttgt tcctaacctc aagttttttt aaattcaagg gtaatgaagg cagtgtggat
      601 aacctattat actctgcgct tagtgatttg atggtgtctg gtaataacgg cagattctct
      661 aattgatttt cggacacatc caaagttatt agataatgtg gtaatgcaga tatatgtgtt
      721 aagaaattat ctcttgcaat aagttcttta atattttcag gtagatcagt aaggatggtt
      781 aatttattac agctcacatc aagcttttta atgcaagcag ggagtacagg taacgaggaa
      841 agcgccaagg ctcgcaggtc cagtttatgc cccttagagg taagacatgc acgaagtctt
      901 cttaccgcct cagtacgctg ttcttccggt aacccctgtt tctcccaatc atcccattcg
      961 gacaaataat ggttggggga tgtaattgtg ctgatatgtg gaaataaaca ggatgaaata
     1021 tttctgagca tattaatttc tcgcatatgg atatggaatt agattgtgaa taaattgtat
     1081 ttaatgtatc tctcctaatg aggagggtgt ttcagaatat tcgccataag ggaatgagtg
     1141 ttatatcatg ctttctatcc tggtaagtat atttgctttt ttcgtatatt tggttcatct
     1201 ttttttgatg ttttacatat tcacaatgca gaggatttat accagaagac attagtcttg
     1261 agtaagatac tacaacatct ccaactattt tagccagcct gactacttga cttggtaata
     1321 tttgttgcta ataatcatgt ataaaataag cttatataca tagtaacttc agcaaaggat
     1381 ttagtaatga tccaaatcat atatcaatgt actgtttttt tctttaaaaa aacagtacat
     1441 tctattttat aatgactgtg tattcccatg gaaggagatc acccaattct cccccccgac
     1501 ttttgacgca gtgtcttgtt aacaggggga tttaccatgc ttattggcta tgtacgcgta
     1561 tcaacaaatg accagaacac cgatctacga cgtaatgcgt tgaactgtgc aggatatgag
     1621 ctgattgttg agcgaatggg agcttgattg gaagttgtta gggtatggtg tttacggtcg
     1681 ttgatatggc gaacaaacgc ggggagcgtc acgctcccta aatggtcgcg aaaatatctg
     1741 tggcattgtc aaatttgtga cggtgactaa tattttaatg atatgccatt cgaaatggtg
     1801 tgctaacgta ttgatttaat tgtgacgcga tgttgtattt tatcgcgttt tgttgtctgt
     1861 ttttcattcg cttgatgttg ctatttacat gaaaaataaa gaatttattg tttttgaggt
     1921 gtgtttatga agcaaacagt ttatatcgcc agccctgaga gccagcaaat tcacgtctgg
     1981 aacctgaatc atgaaggcgc actgacgctg acacaggttg tcgatgtgcc ggggcaggtg
     2041 cagccgatgg tggtcagccc ggacaaacgt tatctctatg ttggtgttcg ccctgagttt
     2101 cgcgtcctgg cgtatcgtat tgccccggac gatggcgcac tgacctttgc cgcagagtct
     2161 gcgctgccgg gtagtccgac gcatatttcc accgatcacc aggggcagtt tgtctttgta
     2221 ggttcttaca atgcgggtaa cgtgagcgta acgcgtctgg aagatggcct gccagtgggc
     2281 gtcgtcgatg tggtcgaggg gctggacggt tgccattccg ccaatatctc accggacaac
     2341 cgtacgctgt gggttccggc attaaagcag gatcgcattt gcctgtttac ggtcagcgat
     2401 gatggtcatc tggtggcgca ggaccctgcg gaagtgacta ccattgaagg ggccggcccg
     2461 cgtcatatgg tattccatcc aaacgaacaa tatgcgtatt gcgtcaatga gttaaacagc
     2521 tcagtggatg tctgggaact gaaagatccg cacggtaata tcgaatgtgt ccagacgctg
     2581 gatataatgc cggaaaactt ctccgacacc cgttgggcgg ctgatattca tatcaccccg
     2641 gatggtcgcc atttatacgc ctgcgaccgt accgccagcc tgattaccgt tttcagcgtt
     2701 tcggaagatg gcagcgtgtt gagtaaagaa ggcttccagc caacggaaac ccagccgcgc
     2761 ggcttcaatg ttgatcacag cggcaagtat ctgattgccg ccgggcaaaa atctcacctc
     2821 atctcggtat acgaaattgt tggcgagcag ggactactgc atgaaaaagg ccgttatgcg
     2881 gtcgggcagg gaccaatgtg ggtggtggtt aacgcacact aaccgctgat ttaaccggcg
     2941 cagtctctcc tgcgccggtg tattaaccta tctcctgtaa cgcatgtctc tggcgttcga
     3001 cgatattggt ccacaaattg tctttatcgt cagtccacaa attaatcagc aaggcaaaaa
     3061 agcgttcagc tgccggagaa agcacggcat ctttgcggcg aataatcccc aatgtccgac
     3121 gtataacggg ttccaccagt gggataccaa taatcgaaga atagggcgca tggggcattg
     3181 ccagaccagg aagcgccgaa atccccagtc ctgcctccac tagtcctaat gacgtcgaaa
     3241 gatgacgcac ttcgtaaaac cagtccagct tccagggctt gtcggccagc tgttgttcta
     3301 tcaacagtcg gttgccgctg gaggagcgta cgccaatcat tttgtaaccc actaactcct
     3361 gccattctac aagctgcttt ttggccaatg gatggtcacg ccgacaggcc agcacgaacg
     3421 gctcgttgac cagtggggta aaatcaatgg atgaatttgt gacgttgttc atgtttatgc
     3481 caaagtctga ttcgttacac agcaccgatt ccatgcaatt attcgtgcct tgttccagaa
     3541 tccgcacttt aatattggga tacagctcat taaatttacc gattgccagc ggtaaaaaat
     3601 aaaatactgc ggtcggaata cacgctaacg tcaccatacc acgatgataa gcattcatat
     3661 cacgaatatt aaaaagcgtt tcatcgaatt tctttattaa ttcccgcgcc tccgggagca
     3721 acctttttcc tgcttttgtt aacgtaacct tgcgagttgt acgctcaaat agttgaatat
     3781 gtaaatcttc ctccatcttt tttattcttc gcgttaatgc aggttgcgta atattgagta
     3841 atttagcggc attgttaaac gaactggact ctgccagtat gacaaatgcc ttcatacttg
     3901 ataattcatg cttcattatt actccggaaa atggaagcga cgattttggg tggctggccg
     3961 ttaaaaattt taactgcatt tagccaactt aaattaatga aaaaatgtta ttaatcgttg
     4021 agctaaagtc attagagatg ctttgccctt aatgtaacca tatcgcaata agttatgttt
     4081 ttaaattgag ggaattatta tgaaaaaaat accctgcgtg atgatgcgag gtggaacctc
     4141 gaggggcgcg ttcctgttag cggaacattt acccgaagat caaacgcagc gcgataaaat
     4201 attgatggca attatgggtt ccggtaacga tctggaaatt gacggtattg gcggcggtaa
     4261 tccactgacc agtaaagtcg ccattattag ccgttccagc gatccgcgtg ctgatgtcga
     4321 ttatctgttt gcgcaggtaa tcgttcatga gcaacgtgtc gataccacgc ctaactgtgg
     4381 caatatgctg tctggtgttg gggcattcgc cattgaaaat ggtttgattg cagcgacttc
     4441 gccagttact cgcgtacgta tccgcaacgt caatacgggt acgttcatcg aagctgatgt
     4501 gcaaacgcca aatggtgttg tcgagtacga gggtagtgcc agaattgacg gcgtaccggg
     4561 tactgccgca ccggttgcgc tcactttcct gaatgccgct ggaaccaaaa ccggaaaagt
     4621 tttcccgact gataatcaga ttgattattt tgacgatgtc ccggtgacct gtatcgatat
     4681 ggcgatgcca gtcgtcatta ttccggctga atatctggga aaaacaggtt atgaattacc
     4741 ggcggaactg gatgccgaca aagcattatt agcctgcatt gaatctatcc gtctacaagc
     4801 gggtaaagca atgggcttag gtgatgtcag taatatggtt atccctaaac ctgtgcttat
     4861 ttctccagcg cagaaaggcg gggcaattaa tgtgcgttat tttatgccgc attcttgcca
     4921 tcgcgcgctg gcgataaccg gtgctattgc tatttccagt agttgtgcat tggaaggcac
     4981 cgtcacccga caaatcgtcc cttctgtagg atatggcaat atcaatattg aacaccccag
     5041 tggtgcgctc gacgttcatt taagtaatga aggtcaggat gccacgacgt tacgcgcatc
     5101 tgttattcgg acaaccagaa aaatattttc cggtgaagtt tatcttccct gaaaaaattc
     5161 gttgtcagga taaggataat caataaagga cttctgtatg agtcatacag aaagaacagg
     5221 attttaaatg aataagaaat cgttatggaa gctaattctg atattagcga tcccatgtat
     5281 tattggtttt atgccagctc cggcaggatt aagcgaactg gcgtgggtgc tttttggtat
     5341 ttacctggcg gccattgtgg gtctggttat caagcctttc ccggaacctg tcgtactgtt
     5401 aattgccgtt gctgcctcaa tggtggtggt cggtaactta tccgacggtg cgtttaagac
     5461 caccgccgta ttaagcggtt actcttcagg tactacctgg ctggtgttct cg
//
LOCUS       DADMHM010000231         5476 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.236, whole genome shotgun sequence.
ACCESSION   DADMHM010000231 DADMHM010000000
VERSION     DADMHM010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5476)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5476)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5476
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.236"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(22..594)
                     /locus_tag="JN125_003732"
                     /pseudo
     CDS             complement(22..594)
                     /locus_tag="JN125_003732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706347.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            812..1672
                     /gene="tesB"
                     /locus_tag="JN125_003733"
     CDS             812..1672
                     /gene="tesB"
                     /locus_tag="JN125_003733"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase II"
                     /protein_id="HAY8873348.1"
                     /translation="MSQALKNLLALLNLEKIEAGLFRGQSEDLGLRQVFGGQVVGQAL
                     YAAKETVPEERLVHSFHSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIF
                     YMTASFQAPEAGFEHQKTMPSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEV
                     RPVEFHNPLKGHVAEPHRQVWIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHGIG
                     FLEPGIQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVLVAST
                     VQEGVMRNHN"
     gene            complement(1721..3007)
                     /gene="amtB"
                     /locus_tag="JN125_003734"
     CDS             complement(1721..3007)
                     /gene="amtB"
                     /locus_tag="JN125_003734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter AmtB"
                     /protein_id="HAY8873349.1"
                     /translation="MKIATIKTGLASLAMLPGLVMAAPAVADKADNAFMMICTALVLF
                     MTIPGIALFYGGLIRGKNVLSMLMQVTVTFALVCILWVVYGYSLAFGEGNNFFGNVNW
                     LMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTL
                     SYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPH
                     NLPMVFTGTAILYIGWFGFNAGSAGTANEIAALAFVNTVVATAAAILGWIFGEWALRG
                     KPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPC
                     DVFGVHGVCGIVGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIVWSGVVA
                     FIGYKLADLTVGLRVPEEQELEGLDVNSHGENAYNA"
     gene            complement(3037..3375)
                     /gene="glnK"
                     /locus_tag="JN125_003735"
     CDS             complement(3037..3375)
                     /gene="glnK"
                     /locus_tag="JN125_003735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HAY8873350.1"
                     /translation="MKLVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAE
                     LYRGAEYSVNFLPKVKIDVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRI
                     RTGEADEAAL"
     gene            complement(3556..5330)
                     /locus_tag="JN125_003736"
                     /pseudo
     CDS             complement(3556..5330)
                     /locus_tag="JN125_003736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308530.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SmdB family multidrug efflux ABC transporter
                     permease/ATP-binding protein"
     gene            complement(5323..>5476)
                     /locus_tag="JN125_003737"
     CDS             complement(5323..>5476)
                     /locus_tag="JN125_003737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter"
                     /protein_id="HAY8873351.1"
                     /translation="IVMQHGHIAQRGNHDELAQQSGWYRDMYRYQQLEAALDDAPEIR
                     EEAVDA"
BASE COUNT         1334 a         1592 c         1360 g         1190 t
ORIGIN      
        1 ggcggagagg gttaacatcg cttaatattg cgtaggagct ggaactgccg aagacggatt
       61 cacctgagtt ggtgaagtcg aaggtacggt agtcgttgca ccaccgctgg cctgaaccgg
      121 cacggcggtt tgctacaccg gcaccaatgt caggtcggct ttagttccgc ccttgttgat
      181 caccggctga acggtatcgg taataaatac cagtttgtca ttcacggtaa tcgccgcact
      241 caacagaata cgcgcgttcg gctgaacatc tgccgggtta aatggcagaa caaagctgaa
      301 tggtgactgt ttaccttcgg tacgcaccgc tttctgcgcc agcacttttg acggtgcatc
      361 ggctaacgac gcgtcagaaa gtgtcacggt cagcacagca tcaggcggca gtgcgacttt
      421 ctgccggatc cagacggtac cggagacatt cggttgctgg atagcaggtt gttgtgttgc
      481 tgaaatagac gtatttgcag ccggggctgg cgtctgaata tccgcgcttt tatctgcgca
      541 agccgccaac gcaatcgcaa ccgctaaacc actggccatg tgcacgagtt tcattcattt
      601 ctccttatta tcaatgcacc agcgggctaa ctttcctcgc cggaagagtg gttaacaaaa
      661 tagtaacgtc aataagtgtg gcacacatca cgcatttctg cctgtaatca gcccgtaatt
      721 cagattattg cacccatcgg accagtggca aatttgcgtt atactcaact cactttggct
      781 tgctgcggca gctttgttac tggagagtta tatgagtcag gcgctaaaaa atttactggc
      841 attgttaaat ctggaaaaaa ttgaggcagg actctttcgc ggccagagtg aagatttagg
      901 tttacgccag gtgtttggcg gccaggtcgt gggtcaggcc ttgtatgctg caaaagagac
      961 cgtcccggaa gagcggctgg tacattcgtt tcacagctac tttcttcgcc caggcgatag
     1021 taagaaaccg attatttatg atgtcgaaac gctgcgtgat ggtaacagct tcagcgcccg
     1081 ccgggttgct gctattcaaa acggcaaacc gattttttat atgacggcct ctttccaggc
     1141 accagaagcg ggtttcgaac atcaaaaaac aatgccgtcc gcgccagcgc ctgatggcct
     1201 gccttcggaa acgcaaatcg cccaatcgct ggcgcacctg ctgccgccag tgcttaaaga
     1261 taaattcatc tgcgatcgtc cgctggaagt ccgtccggtg gagtttcata acccactgaa
     1321 aggtcacgtc gcagaaccac atcgtcaggt gtggatccgc gcaaatggta gcgtgccgga
     1381 tgacctgcgc gttcatcagt atctgctcgg ttacgcttct gatcttaact tcctgccggt
     1441 agctctacag ccgcacggca tcggttttct cgaaccgggg attcagattg ccaccattga
     1501 ccattccatg tggttccatc gcccgtttaa tttgaatgaa tggctgctgt atagcgtgga
     1561 gagcacctcg gcgtccagcg cacgtggctt tgtgcgcggt gagttttata cccaggacgg
     1621 cgtactggtt gcctcgaccg ttcaggaagg ggtgatgcgt aatcacaatt aaaaaaatag
     1681 ccggaggtga aaaccgtccg gctgtttttt gcagtgcttg ttaggcgtta taggcattct
     1741 cgccgtgact gttgacatcc agcccttcta gctcctgctc ttccggtaca cgcagaccaa
     1801 ccgtcagatc cgccaatttg tagccaataa atgccaccac accggaccag acgatcgtaa
     1861 tggcgatgct ttccagctgt accagcaact gatgacccat cgtcacacct tcagcgaagc
     1921 ccacgccgcc cagcgagctg gcggcaaaaa tcccggtcat gatacagccg acaatgccac
     1981 aaacgccgtg cacaccgaag acatcgcagg gatcatccac ccgcagcaag cgtttgagca
     2041 tggtaacgcc ccacaagccc gccagaccag ctaccacgcc gataatcaac gcgccgccaa
     2101 ccccaatgta gccgcacgct ggcgtcacgc cgaccagacc ggcaatcgcg ccagaacacg
     2161 cccccagcag tgaaggctta ccacgcagcg cccattcacc gaagatccag ccaagaattg
     2221 ccgccgccgt tgcgaccaca gtattcacaa atgccagtgc cgcgatttca ttcgccgtgc
     2281 ccgctgaccc ggcgttaaag ccaaaccaac cgatatagag aatggcagtc ccggtgaaga
     2341 ccatcggcag gttgtgcggt ttaaacgcct ctttaccgaa gcccacgcgt ttgcctatca
     2401 gatacgcgcc caccagaccg gcgattgcgg cgttaatgtg caccactgtg ccacccgcga
     2461 aatccagtgc accgtgagaa gccagcaaac cgccgcccca caccatatgc gcaatcggaa
     2521 tgtaagagag cgtcagccat accaccacga aaatcaacac agctgagaag cggattcgtt
     2581 ccgccagcgc cccaactatc aagcctacgg taatgcaggc aaacgatccc tgaaacgcta
     2641 cgtggatata ctgataaatg ctgcccatca ccgccgtcag ttcgatgttt ttcagcatca
     2701 accagttaac gttgccgaag aagttgttac cctcaccaaa cgccagcgag taaccgtaaa
     2761 ccacccagag aatacagacc agtgcaaacg tcaccgtcac ctgcatcagc atcgacagca
     2821 cgtttttgcc gcgaatcaac ccaccgtaaa acagggcaat ccccggaata gtcataaaca
     2881 gcaccagcgc agtacaaatc atcataaacg cattgtcggc tttatcggcc accgcaggtg
     2941 cagccattac cagtcccggc agcatcgcca gtgaagcaag cccagttttt atcgtcgcta
     3001 tcttcatttt tcgttcctgt tgctgtgtgc cagagattac agcgccgctt cgtcggcttc
     3061 gccggtacga atacgaatga cgcgttgcaa ttcagcgacg aagattttgc cgtcgccaat
     3121 ttttccggtg taagccgcct tactgacgat atcgatcact tcatcgagtt ggtcatcagc
     3181 aattgccaca tcaattttta cttttggcag gaagttgacg ctgtattccg ccccccggta
     3241 cagctcggca tgccctttct gacgcccgaa acctttcact tcggtgacgg tcaagccctg
     3301 aataccaatg gaagataacg cttcacgaac gtcttccagc ttgaatggtt tgattatcac
     3361 ggtcaccagc ttcatagatc ccctccggtc agaattcggt aatggttctg ctacacgaag
     3421 aaggtattgc aagcggtgtg ccagaaatga aaaacgagaa agagagcagg aagttaagaa
     3481 gattgaaaat gaaaacgcac tatgacagtg cacagtgcgt tacatttttg caccaacgat
     3541 gaaatattgc gctattcagg cgctcaatga ttcttcttca cgcacgctgg ctgccagctc
     3601 ttcgcccgca agttgcagtt gatacatctg ccagtagcgt ccctgggccg ccagcagttg
     3661 ctggtgagtg ccctgctcca cggcttgccc acgatgaagc accagaatgg tgtcggcatc
     3721 aacaatggtc gataagcggt gagcaatcac caccagcgtg gtatgttcac gcacagccgc
     3781 cagagcatgt tgaatcgcct gttcagtacc ggagtcaatg ctggcggttg cctcatcaag
     3841 gatcaggatt tgcggcgtct ccaccaacac gcgtgccagt gccagcagtt gcttttgccc
     3901 gacggagaga ttattcccct gctcgcccag cggcgtataa ataccatcac tcatgctgcg
     3961 cgccagctcc gccagttgca cggtttccag cgcctgccag acgcgttctt cggagatatc
     4021 acgccccagc gtcacgttgg cgaggaaggt atccgccagc accaccggat cttgctgcac
     4081 cattgccacg ccctggcgca gcgcgctgtg acttagcgaa cttaatggac gaccatcaag
     4141 gcgaatctca ccttccgtta gcgggtaata gcccatcaat aaactggcga gggtgctttt
     4201 gccactgccg gtatgcccga ccagtgccac aaagttacgc gaaggcacag agagattaat
     4261 gttctttagc accagattgt catcgcgata agcaaatgac acgttatcga cttcgatggt
     4321 gccactctgt aacgggcgat catcattgcc atattgctgg cgcggtccgt ccatcagttc
     4381 aaacacgcgc tcaccagcaa caacagcctg ttgcagcatc gcctgttgcg tggtcagttc
     4441 gattaagggt tcattaagtc gcccaagata gctgataaac gcatacagca cgcctacttc
     4501 aatggtgccg ctagcggaga agccaaacag catcaacaag ccacaaagaa tgagcgatga
     4561 aaacagactc agcagcggac gcagcagaaa accgtcgagg cgcagggttt gcatcctggc
     4621 catatagtgt gaacgactgg cctcccccat acgttcgcta aatcgcgcct gctgacggaa
     4681 ctgctggata acgctcatgc cattgatgat ttcgttaaag ccgtcgttga tatccgccag
     4741 ataggcgcgc acacgacgga caatcggcgt gctgtaacgc tggtatatca ccattaccac
     4801 cagcaccacc gggaaaatca ttatcgccac cagcgccagt cgaggctgaa catcgccacc
     4861 agcatcgcgc ccaccagtgc ggcgctacgc aggacagttg ccactacggt aacgtagaga
     4921 tcgcggatca cttcagtgtc attagtgacg cgggaaatca cctgcccgac gggttgggta
     4981 tcaaactcgc ttaatggctg gcgcaatgcg gcatccatca cgtcggtacg caactgttgc
     5041 actacgccta ctgccgcccg attaaacagc agcgactgcg cgtaatgtag cccggcggca
     5101 aacagttgta gcccaacata cgccgcagcc agccctgcaa ccattttcaa cggcaggtta
     5161 tttttcgcta ccatattgtc gataaaatag ctgataagca gcggcccact gacttctgcc
     5221 gctgccgcaa cccacatcat caggaccgca atccccagcg gtttacgcca cggcgaaccg
     5281 tacgctaaca gacgcttgag agtcggccac agttggctaa aactacgcat cgacggcctc
     5341 ctcgcgaatt tccggagcgt cgtcgagcgc cgcctccagt tgttgatagc gatacatatc
     5401 gcgataccag ccgctttgtt gcgccagctc atcatgattg ccacgctggg cgatatgtcc
     5461 gtgctgcatc acaata
//
LOCUS       DADMHM010000232         5460 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.237, whole genome shotgun sequence.
ACCESSION   DADMHM010000232 DADMHM010000000
VERSION     DADMHM010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5460)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5460)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5460
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.237"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(97..337)
                     /locus_tag="JN125_003738"
                     /pseudo
     CDS             complement(97..337)
                     /locus_tag="JN125_003738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309113.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(553..933)
                     /locus_tag="JN125_003739"
     CDS             complement(553..933)
                     /locus_tag="JN125_003739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001204744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitermination protein Q"
                     /protein_id="HAY8873352.1"
                     /translation="MRDIQMVLERWGAWAASGNTGVDYSPIAAGFKGLLPSATKPRPA
                     CCDDDGLIIENCLARLKQKKPEEYSLLIAHYLLRISKRQIARTRKKSEKAIRIEMQIA
                     EGFIDGCLSVLGVRLEMDDWLLKK"
     gene            complement(951..1940)
                     /locus_tag="JN125_003740"
     CDS             complement(951..1940)
                     /locus_tag="JN125_003740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001764249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF968 domain-containing protein"
                     /protein_id="HAY8873353.1"
                     /translation="MRALLTPEIAPRMGIVLFRPGSELMPLFMQGRVLLEPEPERYSS
                     FASGAVPAASQPLADDPAVRAVFRNEEVIRRAGGVECLESWLLREKGCQWPHSDWHSE
                     NMTTMRHAPGAIRLCWHCDNLLRDQFTERLESMATDNCARWVLSVVRRDLGFDDSHVV
                     TMPELCWWLIRNDLADALPESAARKALRLPKPVVPTVTRESDLVPSVPATSIIQDKAK
                     KVLALKVDPESPESFMLRPKRRRWVNEKYTRWVKTQPCACCGKPADDPHHLIGHGQGG
                     MGTKAHDLFVLPLCRKHHDELHADTVAFEEKYGSQLELIFRFIDRALAIGVLS"
     gene            complement(1948..2757)
                     /locus_tag="JN125_003741"
     CDS             complement(1948..2757)
                     /locus_tag="JN125_003741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001061373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KilA-N domain-containing protein"
                     /protein_id="HAY8873354.1"
                     /translation="MNNLMVIDGIEVRRDAYGRYSLNDLHRAAVASGANARTKEPGKF
                     ISSQQTVELVYELTNTQNLGVDPVSMIHGGNERGTYVCKELVYAYAMWISPSFHLKVI
                     RTFDMVTSAPEKLSGQAADKMQAGVILLDFMRREVNLSNSSVLGACQKLQEAVGLPNL
                     APRYAIDAPADAPDGSSRPTLSLSALLKQYGIRLTANQAYHQMVKLGIVEQRERYSRT
                     AINNIKKFWSLTAKGCMFGKNITCPANPRETQPHFFESRFPELLKLLDTVH"
     gene            complement(2777..3166)
                     /locus_tag="JN125_003742"
     CDS             complement(2777..3166)
                     /locus_tag="JN125_003742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000767134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RusA family crossover junction
                     endodeoxyribonuclease"
                     /protein_id="HAY8873355.1"
                     /translation="MKLILPFPPSVNTYWRHPNKGAFAGKSLISAAGRKFQSAACAAI
                     VEQLRRLPKPTSAPASVEIVLFPPDNRIRDLDNYNKALFDALTHAGVWEDDSQVKRML
                     VEWGPVIPKGKVEITISKYEKTAGAAA"
     gene            complement(3163..3816)
                     /locus_tag="JN125_003743"
     CDS             complement(3163..3816)
                     /locus_tag="JN125_003743"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001378271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage N-6-adenine-methyltransferase"
                     /protein_id="HAY8873356.1"
                     /translation="MSNKYCQALVELRNKPAHELKEVGDQWRTPDNIFWGINTLFGPF
                     VLDLFTDGDNAKCAAYYTAEDNALAHDWSERLAELKGAAFGNPPYSRASQHEGQYIIG
                     MRYIMKHASAMRDKGGRYVFLIKAATSEVWWPEDADHIAFIRGRIGFELPAWFIPKDE
                     KQVPTGAFFAGAIAVFDKTWKGPAISYIGRDELEACGEAFLAQVRQQAEKLVREMVA"
     gene            complement(3816..4304)
                     /locus_tag="JN125_003744"
     CDS             complement(3816..4304)
                     /locus_tag="JN125_003744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001531318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PerC family transcriptional regulator"
                     /protein_id="HAY8873357.1"
                     /translation="MSLLNEVQKFIEAHPGCTSGDIADAFAGYSRQCVLQSASKLRQS
                     GRVAHRCEGDTRRHFPRLTERAQEAEPQPVRETRPVRNFYVGTNDPREILCLTRQAEE
                     LESRGLYRRAATVWMAAFRESHSQPERNNFLARREQCLRKSSKRAVSGDEWYLSGNYV
                     GA"
     gene            complement(4301..5125)
                     /locus_tag="JN125_003745"
     CDS             complement(4301..5125)
                     /locus_tag="JN125_003745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000061542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAY8873358.1"
                     /translation="MSMELMVKAMKIRVGNPLRKLVLIKLADNASDQGECWPSYQHIA
                     DQCEISKRSVMNHIAALCESGLVKKVTRKGEKGNSSNIYLLHLDGAGDSLGGSANNSL
                     SGAANSPGSAGVAPRGSAGDSPRTSHSFEPVKEPVNEPIAVGASVDESVRVRSNRPEY
                     SPEFEQAWLAYPKRAGGNSKSAAFKAWKARLNEGVNPETMLEGVKRYAGWVSAMGNSG
                     TQFVKQAVTFFGPDRHFEESWEVPAVSAARREDPYFKASYDNVDYSQIPAGFRGGL"
     gene            complement(5122..5346)
                     /locus_tag="JN125_003746"
     CDS             complement(5122..5346)
                     /locus_tag="JN125_003746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001401086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873359.1"
                     /translation="MIRNIFKRFTNQTFHCPRPGQWYTTPAGHVLRVSLVDRECQKVI
                     CEPLGRNYRISMPLIAFRSGKNMKHLGGAA"
BASE COUNT         1289 a         1571 c         1264 g         1336 t
ORIGIN      
        1 cctgtctctg ataggctcat tctgcttttg cgcaaagcag tgggcctgag gtttgcttgt
       61 gaacccaacg catgagcaga tggctggtgg gtgcccctaa cacccaccag ccgcccattt
      121 accacaaata aaaaagcctt caggactgaa ggcgtctgta acaaccgaac tgatagtctg
      181 ccagacccgc cataacaagt tgggtcagta ttaactgaca gcgttcgcgt gaaaggtaag
      241 tattctgcgc aatctccccg actgtcgccg gttcggtgac gcttaattca ttaaacacca
      301 ctctggcggt ttctgtcata tcctgctgtt tcagcatgtc tttttccctt ttccggttaa
      361 cgtgacacac caataactct tgtcgaaaaa gccagcaagc tgaaagacag gtattcaccg
      421 ccaccagcac gtttactgta ctggaccgat ttcagccata aaaaaacccg ctcgcggcgg
      481 gtttaagctg tgtggcgaag taaccactct taacatactg acatactttt tgcggaccgc
      541 actaatcatt ttttactttt ttagcagcca gtcgtccatc tccagtctta cccccagcac
      601 agacaaacat ccgtcaataa acccttcggc tatctgcatc tcaattcgta ttgctttttc
      661 gcttttcttt ctcgtcctgg ctatctgtct ttttgatatt cgcaacaaat aatgagcaat
      721 gagaagcgaa tactcctcag gttttttctg cttcagacga gcaagacagt tttcaatgat
      781 aagtccgtca tcatcgcagc aggccggacg tggtttagtg gcagatggta aaagtccttt
      841 gaatccggca gcgatcggag aatagtccac cccggtgtta ccacttgcag cccatgcccc
      901 ccagcgttca agaaccatct gaatatcacg catcaacttt ctccacaaaa tcaggacagc
      961 acaccaatcg ccagcgcgcg atcgataaaa cgaaatatca gctccagttg ggagccatac
     1021 ttctcttcaa atgccacggt atccgcatgc agttcgtcat ggtgttttct gcacaaaggc
     1081 aacacaaaaa ggtcatgcgc ttttgttccc attccaccct gaccgtgacc tatcaggtgg
     1141 tggggatcat cagcgggctt tccacaacat gcacacggct gtgtcttaac ccagcgcgtg
     1201 tacttttcat taacccagcg gcgacgtttt gggcgtaaca taaaagactc cggcgactcc
     1261 ggatccactt tcagcgccag cacctttttc gccttatcct ggatgatgct ggtggcagga
     1321 accgaaggca caaggtcact ttcccgggta acagtcggca caacaggctt cggtaatctc
     1381 agtgccttac gggctgcact ttccggtaag gcatccgcca gatcattacg aatcagccac
     1441 cagcacagtt ccggcattgt cacaacgtga ctgtcatcaa aaccgagatc ccgacgcaca
     1501 acagacaaca cccagcgggc acagttatcc gttgccattg attccagccg ttccgtgaac
     1561 tggtcacgga gaagattgtc acagtgccag cacagacgga ttgcacccgg agcgtgtcgc
     1621 attgtggtca tgttctcgct gtgccagtcg gaatgaggcc actggcagcc tttttcacga
     1681 agtaaccagc tttcaagaca ttccacgcca ccagcacgac ggatcacttc ctcattgcgg
     1741 aacacggccc gaacggcagg atcatccgcc agcggttgtg atgccgccgg aacggcacca
     1801 ctggcgaaag atgaataacg ctccggctca ggctccagca ggacacgccc ctgcataaac
     1861 aggggcatca gctctgaacc tggtctgaac aatacgatcc ccatacgcgg ggcaatttca
     1921 ggggtcagta gtgctctcac ggtcacctca atgaacggta tcgagcagct ttaacagctc
     1981 agggaatcgg gattcgaaga aatgcggctg cgtctcgcgc ggatttgcag gacaggtgat
     2041 gttcttgccg aacatgcagc ctttcgctgt cagcgaccag aattttttga tgttgttaat
     2101 cgcggtacgg ctgtatcgtt cgcgctgctc gacgatcccc agcttaacca tctggtgata
     2161 tgcctgatta gccgtaaggc ggataccata ctgtttcagc agtgcactca gcgacagcgt
     2221 ggggcgactt gagccatcag gcgcgtcagc aggagcatca atggcatagc gcggtgccag
     2281 attcggtaag ccaacagcct cctggagttt ctgacaggca ccaagcactg aagagttaga
     2341 caggtttact tcccggcgca taaagtccag cagaatcaca ccagcctgca tcttgtcagc
     2401 agcctgtccg gataattttt ccggtgcgct ggttaccatg tcgaaagtac ggatcacctt
     2461 cagatggaat gacgggctga tccacattgc ataggcatac accagttcct tgcagacata
     2521 cgttccccgt tcatttcccc catgaatcat actcaccggg tcaacaccca aattctgggt
     2581 gttggtcaat tcataaacaa gctcaacagt ttgttggctg gaaataaact ttcccggctc
     2641 cttggttctg gcatttgcac cagatgctac tgctgcgcga tgcagatcgt tcaggctgta
     2701 acgcccataa gcatcacgac gaacttcaat accatcaatg accatcagat tattcatact
     2761 tcgtttctcc tcttgatcag gcggctgcac ccgccgtttt ctcgtactta ctgatagtga
     2821 tctcgacctt ccctttcggg ataaccggtc cccactccac cagcattctt ttcacctgac
     2881 tgtcgtcttc ccacacaccc gcgtgggtca gggcgtcaaa cagcgccttg ttatagttgt
     2941 ccagatcgcg gatccggtta tccggaggaa acaacacgat ctccactgaa gcaggtgccg
     3001 acgttggttt cggcagacga cgtaactgct caactattgc tgcgcacgcc gcgctctgga
     3061 attttcgccc cgccgcgctt atcaggctct taccagcaaa cgcccctttg ttggggtgtc
     3121 gccagtacgt gttcacgctg ggcggaaaag gcagtattag cttcatgcca ccatctccct
     3181 gaccagtttt tccgcctgct ggcgaacctg cgccagaaat gcctcaccac atgcctcaag
     3241 ttcatcgcgc ccgatgtagc tgattgccgg tcccttccag gtcttgtcga aaacagcaat
     3301 agcaccagcg aagaaagcac ctgttggcac ctgcttttcg tctttcggga taaaccaggc
     3361 aggcagttca aaaccaatac gcccgcgaat aaaagcaata tgatctgcat cttccggcca
     3421 ccacacttcg ctggtggcag ctttgatcag gaaaacatag cgcccgcctt tatcacgcat
     3481 ggcactggca tgcttcatga tgtaacgcat gccgatgatg tattgcccct catgctgact
     3541 ggcgcggctg tacgggggat tgccaaaggc agcaccttta agctccgcaa gacgttctga
     3601 ccagtcatgc gccagcgcgt tgtcttccgc cgtgtaatac gcggcacatt tggcgttatc
     3661 accgtcagtg aacagatcca gaacaaacgg accaaacaag gtgttaattc cccagaaaat
     3721 gttgtccggc gtgcgccact gatcgcccac ttccttcagt tcatgggctg gtttgttccg
     3781 cagttccacc agcgcctggc aatatttatt actcattaag cccccacgta attccctgac
     3841 agataccact catcacccga tacagcgcgc ttactgcttt tccgtaaaca ctgctcacga
     3901 cgcgccagaa aattgtttcg ttctggctgg gagtggcttt cacggaatgc cgccatccac
     3961 accgttgcag cacgacggta taagcccctg gactccagtt cttccgcctg gcgggtcagg
     4021 cacaaaatct cccgcgggtc gttagtgccg acatagaaat tgcgcacagg tctggtttca
     4081 cgaactggtt gcggttccgc ctcctgcgct ctctcagtca ggcgcgggaa atgtctgcgt
     4141 gtatcccctt cacaacggtg agccacacga ccactctgac gtaatttgct tgctgactgc
     4201 agaacgcact gccgtgagta acctgcaaaa gcatccgcaa tgtctccgga agtacacccc
     4261 ggatgggctt caatgaattt ctgaacttca ttcaaaagac tcataatccc cccctgaatc
     4321 ctgccgggat ctggctgtag tccacgttgt cgtaactggc tttgaagtac gggtcctcgc
     4381 gtctggctgc agataccgca ggaacttccc aggattcttc gaaatgacga tctggaccaa
     4441 agaacgtgac agcctgtttc acaaattgtg tgccgctatt gcccatcgca gatacccagc
     4501 ccgcgtagcg tttcacacct tccagcatgg tttcggggtt taccccctcg ttcaaacggg
     4561 ctttccaggc tttgaaggct gcagattttg aattgccacc agcacgtttg ggatatgcca
     4621 gccatgcctg ctcaaactcc ggagagtatt ccggtcggtt tgaacgaact cgcacggact
     4681 catcaactga tgcaccaaca gctattggtt cattgactgg ttctttgact ggttcaaaag
     4741 agtgactggt tctgggtgaa tctcctgcac taccccttgg tgcaactcct gcactacctg
     4801 gtgaatttgc tgcaccagat agtgaattat ttgcactacc ccctagtgaa tctcctgcac
     4861 catcaagatg aaggagatag atattacttg agttaccttt ttcacctttc cgggtgactt
     4921 tttttaccag cccggactca caaagggccg caatatgatt catcacagaa cgtttgctaa
     4981 tctcgcactg gtcagcaata tgctggtagc tgggccagca ctcaccctga tcgctggcat
     5041 tatcagccag cttaatcaga accagttttc gcaatggatt tcccactcga attttcatcg
     5101 ctttaaccat cagctccata ctcatgcagc acctccgaga tgcttcatgt tttttccgga
     5161 gcgaaaggct ataagcggca tactgatgcg gtaattacgg cccagcggtt cacaaatcac
     5221 cttctgacat tcacggtcaa ccaggctaac acgtagaaca tgccctgcag gcgtggtgta
     5281 ccactgaccc ggacgaggac aatggaaagt ctgattggta aaccgtttga aaatattccg
     5341 gatcatttgc gcccccttac ctctgaaggg ttcagcgaca aatttatgag gcaggccagt
     5401 gccgaagcat cattaatata gtcatacaag ctaacagcca gcggagattc ggcttttgcc
//
LOCUS       DADMHM010000233         5307 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.238, whole genome shotgun sequence.
ACCESSION   DADMHM010000233 DADMHM010000000
VERSION     DADMHM010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5307)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5307)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5307
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.238"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            34..1305
                     /locus_tag="JN125_003747"
     CDS             34..1305
                     /locus_tag="JN125_003747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001415629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1983 domain-containing protein"
                     /protein_id="HAY8873360.1"
                     /translation="MYDPTVQFELWFSEAKIADTSQVETSARYLGTGSQWSVSGPHIK
                     PGKDFWFYVRSVNLVGKSAFVEASGRASNDAEGYLGLFREKIGKLHLAQGLWELIDNS
                     QLADEMAEMKTTITETRNEITQTVSKTLEEQSATIQQIQRVQKDTNDDLAALYMLKVQ
                     KTKNGIPYVAGIGAGIEDTDGQPLSNILLLADRIAMINPEDGNTTPLFVAQGNQLFMN
                     DVFLKRLFAVSITSSGNPPTFSLTPEGRLTARNADISGNVNANSGTLNNVTINENCRV
                     LGKLSANQIEGDLVKTVGKAFPRDSRAPERWPSGTVTVRIYDDQPFDRQIVIPAVAFS
                     GAKHEREHTDIYSSCRLIVRKNGAEIYNRTALDNTLIYSGVIDMPAGHGHMTLEFSVS
                     AWLVNNWYPTASISDLLVVVMKKATAGISIS"
     gene            1373..1962
                     /locus_tag="JN125_003748"
                     /pseudo
     CDS             1373..1962
                     /locus_tag="JN125_003748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706647.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Ail/Lom family outer membrane beta-barrel
                     protein"
     gene            2027..3262
                     /locus_tag="JN125_003749"
     CDS             2027..3262
                     /locus_tag="JN125_003749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000279106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase S74"
                     /protein_id="HAY8873361.1"
                     /translation="MTVKISGVLKDGTGKPVQNCTIQLKAKRNSTTVVVNTLASENPD
                     EAGRYSMDVEYGQYSVILLVEGFPPSHAGTITVYEDSQPGTLNDFLGAMTEDDARPEA
                     LRRFELMVEEVVRNAEEAKKNAGEAETSARNAGISASQAEESAANADTSAGDASESAR
                     QAAESAASAKQSEEASSSSASAAAQKASESLQSATDAELSKKTAESAAGNAVRDATTA
                     TEKARESTESAQSAEQSRIAAEEAVNRIPTVVGPPGPKGEPGPAGPQGPKGDTGAPGQ
                     GTELLTTANTWTQAQTFNGGINGNLTVTGNGSFNDIQIRSDKRNKRNLVKLDNALDRL
                     EALTGYLYEIQYSADGWQTSVGLIAQDAQKALPELVTEDADVISGEKRLRLNYNGIIA
                     LLVEGFKTLRHEIKELREK"
     gene            3348..3860
                     /locus_tag="JN125_003750"
     CDS             3348..3860
                     /locus_tag="JN125_003750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000513231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873362.1"
                     /translation="MGVTSGWVGSSAKSETGEQWMGAAGTKLGLSKPFMMSQMVGRTM
                     GCKIATEYYKWKSSDKVDNWGAVGADWPLEEKSKGTITNAASCGSGRLVGAVVTLSHF
                     LTNSTPTAAVYLAGGKAGNITVNVGGATQTMIYQGVVSGFQYYWSGSVSSAFVEAMKK
                     TGVPQDLKIS"
     gene            3936..4148
                     /locus_tag="JN125_003751"
     CDS             3936..4148
                     /locus_tag="JN125_003751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001114260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4376 domain-containing protein"
                     /protein_id="HAY8873363.1"
                     /translation="MPEKFFRTDADNNDVPMTAASWMALSEATEQAMFAKGVEINTRQ
                     LQMKAEVEALTDLKAIRSYVVGWPAG"
     gene            complement(4290..4614)
                     /locus_tag="JN125_003752"
                     /pseudo
     CDS             complement(4290..4614)
                     /locus_tag="JN125_003752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414822.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
     gene            complement(4750..4998)
                     /locus_tag="JN125_003753"
     CDS             complement(4750..4998)
                     /locus_tag="JN125_003753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinI family protein"
                     /protein_id="HAY8873364.1"
                     /translation="MRIEICIAKEKMTKMPTGAVDALKEELTRRISKRYDDVEVIVKA
                     TSNDGLSVTRTADKDSAKTFVQETLKDTWESADEWFVH"
BASE COUNT         1403 a         1152 c         1490 g         1262 t
ORIGIN      
        1 tattttcaga taacagcggt accgcgtctt gcggtgtatg acccgacggt acagtttgag
       61 ctctggtttt cggaggcaaa aatcgcagac acatctcagg tggaaacctc tgcccgttat
      121 ctggggaccg gcagtcagtg gagtgtatct ggcccgcaca ttaagcccgg gaaggatttc
      181 tggttttacg tgcgcagcgt caacctggtg gggaaatctg cttttgtgga ggccagtgga
      241 cgggccagca atgatgcaga agggtatctg gggctgtttc gggaaaaaat aggaaaactg
      301 catctggctc aggggctgtg ggagctgata gacaacagcc agcttgcgga tgagatggcg
      361 gagatgaaga ccaccatcac cgaaacccgc aatgaaatca cacagacggt cagtaaaacg
      421 ctggaggagc agagcgccac catacagcag atacagcgcg tgcagaagga cacaaatgat
      481 gaccttgctg cactttacat gctgaaggta cagaaaacaa aaaatggcat accctatgtt
      541 gccggtattg gagcggggat tgaggatact gatggccagc ccctgagcaa catactgctg
      601 ctggctgacc gtattgcgat gattaacccg gaggacggca acaccacgcc gttatttgtg
      661 gcgcagggga atcagttgtt catgaacgat gtgttcctga agcggctgtt tgcggtgagt
      721 atcacctcgt ccggcaatcc cccgacgttt tccctgacgc cggagggcag gctgaccgca
      781 agaaatgctg atatcagcgg taacgtgaat gcgaactccg ggacgctcaa caacgtcacg
      841 attaacgaga actgccgggt tctgggaaaa ctgtccgcga accagattga aggcgatctc
      901 gttaaaacag tgggtaaggc ttttccgcgg gactcccggg caccggagcg gtggccatca
      961 gggaccgtta ccgtcaggat ttatgacgat cagccttttg accggcaaat tgttattccg
     1021 gcggtggcat tcagcggcgc taagcatgag agagagcata ctgatattta ctcctcatgc
     1081 cgtctgatag tgcggaaaaa cggtgctgaa atttataacc gtaccgcgct ggataatacg
     1141 ctgatttaca gtggcgttat tgatatgcct gccggtcacg gtcacatgac gctggagttt
     1201 tcggtatcag catggctggt gaataactgg tatcccacag caagtatcag cgatttgctg
     1261 gttgtggtga tgaagaaagc caccgcaggc atcagtatca gctgaatttt ataacccata
     1321 tacgggcgcc agaaatggcg ccttttttat tgcagaaaag cgagaggtaa ttatgcgtaa
     1381 agtttgtgca gccattttgt ccgcagccat ctgtctgtcc gtatccggtg cgcctgcatg
     1441 ggcgtctgaa catcagtcca cactgagcgc ggggtatctt catgcccgta cgaacgctcc
     1501 cggcagcgat aatctgaacg ggattaacgt gaaataccgt tatgagttta cggacgcgct
     1561 ggggctgatt acgtccttca gttatgccaa tgctgaagat gagaaaaaaa cgcactacag
     1621 cgatacccgc tggcatgaag attccgttcg taaccgctgg ttcagcgtaa tggcggggcc
     1681 gtgaatgaat ggttcagcgc gtatgcgatg gcgggtgtgg cttacagccg tgtgtcgact
     1741 ttctccgggg attatctccg cgtaactgac aacaagggga aaacgcacga cgtgctgacc
     1801 ggaagtgatg acggtcgcca cagcaacacg tctctggcgt ggggggctgg cgtgcagttt
     1861 aacccgaccg aatccgtggc cattgatatt gcttatgaag gttccggtag tggcgactgg
     1921 cgcactgacg gtttcatcgt gggtgtcggc tataaattct gattagccag gtaacacagt
     1981 gtcatgacag cccgccggtt caggcgggct tttttgtggg gtgaatatga cagtaaagat
     2041 ttctggtgta ctgaaagacg gcacaggaaa accggtacag aactgcacaa tccagctgaa
     2101 agcaaaacgt aacagtacca cggtggtggt gaacacgctg gcctcagaaa atccggatga
     2161 agccgggcgt tacagtatgg acgttgagta tggtcagtac agcgttattc tgttggtgga
     2221 gggattcccg ccgtcacatg ccgggactat caccgtgtat gaagattctc aacccggtac
     2281 gctgaatgat tttctcggtg ccatgacgga ggatgatgcc cgtccggagg cactgcgtcg
     2341 ctttgaactg atggtggaag aggtggtgcg taacgcagag gaggcgaaga agaatgccgg
     2401 agaggcggag acgtcagcga ggaatgccgg catatcagcc agtcaggcag aagagagcgc
     2461 tgcaaatgct gacacttcag caggggatgc atcggagtca gcccggcagg cggcagaaag
     2521 tgcagcctca gcaaagcagt cagaggaggc gtcctcgtcc tcggcctctg cggccgctca
     2581 aaaagccagt gagtcattac aaagtgcaac agatgctgag ttgtcaaaaa agacggcaga
     2641 aagtgcagcc ggtaatgcag tcagggatgc aacgaccgca acagaaaaag cccgggagtc
     2701 aacagaaagc gcacagtcag cggaacaaag caggatagcg gcggaagagg ccgtaaaccg
     2761 aatccccacc gtggtgggac ctcccgggcc aaagggggaa ccggggcccg cgggtcctca
     2821 ggggccgaag ggagacacag gagcccccgg gcaaggaaca gaactgctta ctactgccaa
     2881 tacatggact caggcacaaa cttttaatgg tggtattaat ggcaatttga cggtgaccgg
     2941 aaacggctca tttaacgata ttcagatccg ttcggataaa cgcaacaagc gaaatctggt
     3001 aaaactggat aatgcgttag atcgtctgga ggcacttact ggttatcttt acgagataca
     3061 gtactctgcc gacggttggc aaacgtcggt tggtttaatt gctcaggatg cacaaaaagc
     3121 attgcctgaa ctggtaactg aagacgcaga cgttatatct ggtgaaaaac gtctgcgtct
     3181 taactacaac ggcataattg cattgttagt cgagggcttt aaaacacttc gtcatgagat
     3241 taaagaactc cgggagaagt aaacgacagc tgttgtagtt tctggtttct actgaattta
     3301 aattgtgggg tgacactcac cccacgcatt cagaaggggg agatgagatg ggggtaacat
     3361 cgggatgggt aggctcttcg gctaagagcg aaacaggtga gcagtggatg ggagccgccg
     3421 gaaccaaact gggactgagt aaacctttta tgatgagcca aatggttggg cgaactatgg
     3481 gctgtaaaat tgcaactgag tactataaat ggaaatcctc tgacaaggtt gataactggg
     3541 gcgcagttgg cgctgactgg cctttagaag aaaaaagtaa aggtacaatt acaaacgccg
     3601 caagctgcgg atcagggagg ctggtagggg ctgtcgttac actttctcac tttttgacga
     3661 actctacacc gacagctgct gtttatttag ccggtggtaa agcaggtaat atcaccgtaa
     3721 acgtaggtgg tgctacacaa accatgattt atcagggcgt tgttagtggg ttccagtatt
     3781 actggtcagg ttctgttagt tccgctttcg tggaggcaat gaaaaagacg ggagtacccc
     3841 aggatctaaa aattagttaa atggtaaata aataatttta aaaacttcac gttctacata
     3901 ccggagacgc cggatatata ggatattgtt ttaagttgcc agagaaattt ttccggacgg
     3961 atgctgataa taatgatgtg ccaatgacgg cagcatcatg gatggcactg agtgaagcga
     4021 cagagcaggc gatgtttgcg aagggagtgg agattaatac acggcagttg cagatgaaag
     4081 ccgaggttga ggcgctgaca gacctgaagg cgatccgcag ttatgttgtc ggatggcctg
     4141 ctggctgaat aaaaaaacgg gaccacgacc agtcccggaa ccatgagttt tagggtatta
     4201 gtttgttatc atagttagcg tgctaagtat gccatgtcag gttgattagt gaagtgatgt
     4261 tgttcgcatt tttgcacggc ggagaatatt cagatttttg gaaatccata tttttcccgt
     4321 gcgcgattac atgcttcatt tacgatgcta ttttcgccgg acattgcgaa ttccctgcat
     4381 gtggacggtt tttgtaaaca gagcaatatg cgttttctcc gggggggccg gcaagagcgc
     4441 cacatcgggg atttttctga ttggtgccgc gcatacagcg atgaaaagga gatatttgct
     4501 cagtgagact gaccgaaacc tttccgccag catcgtcagc ttctgcccag taaaaagaga
     4561 cgcggaaaat gcacaacagg caccacacgt catgcatgga ttcagattgc tcataattca
     4621 ccagtacagc tataaatcgt aaagagaaca gcggtacatc gtatgtaaga acgtaccgcg
     4681 gctggctggt gaacttccga tagtgcgagt attgaatgat ttccagccgt tacagatttt
     4741 acgtgctaat tagtgaacaa accactcgtc agcagactcc caggtatctt tcagagtttc
     4801 ctgaacaaaa gttttagctg aatctttatc ggcggtgcgc gtaacagaaa ggccatcgtt
     4861 gctggtagct tttacgatca cctctacatc gtcataacgt ttactgatgc gtcgggttaa
     4921 ttcttccttt aacgcatcca cagcaccggt tggcatttta gtcatttttt ctttggctat
     4981 gcagatttca atacgcataa aagtccctct acactgtgtt tgtatacagt atcattttta
     5041 actgtatgga taaacagtat caagggtgaa ggaaagtgat tttttggggc atgcatgggg
     5101 caaaaatatt tgttgtgggg cattttgggg catgattggg acactttgtt acatatgaac
     5161 tttgccgatt tttatatgac atggaaatac aacgctttga ttcttctaaa taaaaaacat
     5221 gctcttgggc gttctttagt gatttttaaa aattccgtat cacgcagtta aagtggcggg
     5281 catactcttc aaggctggtg atcccca
//
LOCUS       DADMHM010000234         5306 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.239, whole genome shotgun sequence.
ACCESSION   DADMHM010000234 DADMHM010000000
VERSION     DADMHM010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5306)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5306)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5306
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.239"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            148..264
                     /locus_tag="JN125_003754"
     CDS             148..264
                     /locus_tag="JN125_003754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004996477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
                     /protein_id="HAY8873365.1"
                     /translation="MPGIPPEIRWNNQKNALQLWNKEGGVVRREGDPLEMAQ"
     gene            628..1470
                     /locus_tag="JN125_003755"
     CDS             628..1470
                     /locus_tag="JN125_003755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HAY8873366.1"
                     /translation="MLNEGGILFKANHVPVLMYHHVSHCPGLVTLSPVTFRKQMKWLA
                     ENNWKTLSSDELEFFYRGGKLPRKSVMLTFDDGYLDNWFQVYPLLKEFNLKAHIFLIT
                     GFIGNGPVRHSPGKEYSHRDCEHQIATGNADNVMLRWSEVNEMLQSGLVEFHVHTHTH
                     TRWDKKFSSREEQCKHLRQDLLSGREYLKEMTGKCSKHLCWPEGYYNKDYIQVAEELG
                     FYYLYTTERRMNAPAKGTTRIGRISTKERESCAWLKRRLFYYTTPFFSSLLAFHKGPR
                     LPDD"
     gene            1473..2561
                     /gene="capU"
                     /locus_tag="JN125_003756"
     CDS             1473..2561
                     /gene="capU"
                     /locus_tag="JN125_003756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative hexosyltransferase CapU"
                     /protein_id="HAY8873367.1"
                     /translation="MNILFTESSPNIGGQELQAVAQMKALKKMGHSVLLVCRENSKIA
                     FEASKLGIDITFALFRNSLHIPTAWRLLGIVHGFQPNAIVCHSGHDSNIVGLVRLFTW
                     KHPFRIIRQKTYLTRKTKVFSINHFCDEVIVPGTSMKTHLEQEGCRTRVTVVPPGFDF
                     QKLYVDSRNSLPPNVLSWLASRRGCPVIAQVGMLRPEKGHEFMLNLLFHLKMNGRQFC
                     WLIVGSGSPELREHLQYQIDSMGMHDDVFIADNVFPAAPVYRVASLVVLPSENESFGM
                     VLAEASAFSVPVLASQIGGIPDVIQNNQTGTLLPAGNKHAWMCALNDFFNDPGRFYQM
                     ARQAKQDIEERFDINKTALKILTLAKHK"
     gene            2566..3516
                     /gene="virK"
                     /locus_tag="JN125_003757"
     CDS             2566..3516
                     /gene="virK"
                     /locus_tag="JN125_003757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor VirK"
                     /protein_id="HAY8873368.1"
                     /translation="MFSVSNLSFIGFLKRIVFSSDSLPGKWEHRKFRFMYILRCAINP
                     VVSIRYYYELRSLPCIEDILAIHPTLPARIHRPYLHKGGRAWTRGQYILEHYRFVQNL
                     PEKYSKFLFPQKSVSLVQFIGKDGENFDIQCSPSGFDREGELMLSLFYNKTVITRLTF
                     SVILTQNGHIAFIGGLQGAPKNTGPDVIRCATRACYGIFPKRIIFEAFCALMKACNIS
                     ECLAVSEHSHVFRQLRYWYQKRKTFVAVYSDFWESVAGKTCGDWYRLPTQVIRKPLSD
                     IASKKRSEYRKRYALLDYIHETTIRSLDAYPVHSEHQDLN"
     gene            3581..4525
                     /gene="lpxM"
                     /locus_tag="JN125_003758"
                     /gene_synonym="msbB"
     CDS             3581..4525
                     /gene="lpxM"
                     /locus_tag="JN125_003758"
                     /gene_synonym="msbB"
                     /EC_number="2.3.1.243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858371.1"
                     /note="LpxM is lauroyl-Kdo(2)-lipid IV(A)
                     myristoyltransferase, an enzyme characterized in
                     Escherichia coli and involved in biosynthesis of the form
                     of lipid A found in that species and some closely related
                     species; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase"
                     /protein_id="HAY8873369.1"
                     /translation="MKKYKSEFIPEFKKNYLSPVYWSTWFLLGMIAGISMFPPSFRDP
                     VLAKIGRWAGRLSKKARRRATINLSLCFPEKSDTEREIIVDKMFATALQSIVMMAELA
                     IRGPEKFQKRVFWKGLEILEEIRYNNKNVIFLVPHGWSVDIPAMLLAAQGEKMAAMFH
                     QQRNPVIDYVWNSVRRKFGGRLHSREDGIKPFIQSVRQGYWGYYLPDQDHGPEYSEFA
                     DFFATYKATLPIIGRLMNISQAMIIPLFPVYDEKKHFLTIEVRPPMDACIASADNKMI
                     ARQMNKTVEILVGSHPEQYIWVLKLLKTRKSNEADPYP"
     gene            complement(4680..5306)
                     /locus_tag="JN125_003759"
                     /pseudo
     CDS             complement(4680..5306)
                     /locus_tag="JN125_003759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001395480.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
BASE COUNT         1466 a         1055 c         1221 g         1564 t
ORIGIN      
        1 tatcggtggc aatagcctgt gcaaattttt tataacccgg gatcgtgtca ggattcagag
       61 tatgataaag acagattttc atggctgccg gtttccgtcg tgcaaaaaac atgctgattt
      121 tacgaaggaa tgccttactg aacaaccttg cccggaatcc cccccgaaat cagatggaac
      181 aatcagaaaa atgctctgca gttatggaat aaagaaggtg gggtggtacg ccgggagggc
      241 gatccgctgg aaatggcgca gtagctgcag gcctgtcatg atgccggaat agaagttcgt
      301 gtacaggtta atgaaagcgt caccccgtaa ataaactctg cgctgaaatt cctttttttc
      361 attggagcac ctgtgttgtt ctgaggtgaa catatcacct ctgttcaggt agccaaattc
      421 agtgtgccac ctcaaggttc ttagtgagtc gtttttaaaa gatatgataa tatatcattg
      481 tttatgaatt gttgatgttt aatttagtaa aatatatcaa gtatgccatg ggtttgctat
      541 gttattcatc cagtatctgg aaataaaatg caccagcttt attgggtttt ccttttgtct
      601 ctgcttacta ggtgccagaa actttaaatg ttaaacgaag ggggcatttt gttcaaagcc
      661 aatcatgttc cggtattaat gtatcatcat gtcagtcatt gccccggact ggttacactt
      721 tctcccgtga cattccggaa gcaaatgaaa tggttggctg aaaacaactg gaaaacactg
      781 tcatcagatg aactggagtt tttttatcgg ggcggaaaac tcccccggaa aagcgttatg
      841 ttgacatttg atgatggata ccttgacaac tggtttcagg tatatccttt attaaaagag
      901 tttaatctca aagcacatat ttttttaatt accggtttta ttgggaatgg tccggttcgt
      961 cactctcctg gaaaggaata ttctcatcgc gattgcgaac atcaaatagc gacagggaat
     1021 gctgataatg ttatgcttcg ctggtctgaa gtaaacgaaa tgttgcaatc tggtctggtc
     1081 gaatttcatg ttcatacgca tactcataca cgctgggata aaaagttcag ttcacgagaa
     1141 gaacagtgta aacatcttcg gcaggacttg ttgagcggga gagaatattt gaaagaaatg
     1201 acaggaaaat gcagtaaaca tttgtgttgg ccggaaggtt attataacaa ggattatatt
     1261 caggtcgctg aagaacttgg attctattat ttatatacaa cagaaagaag aatgaatgct
     1321 cctgctaaag gaactacacg gataggaaga ataagcacca aagaacggga aagttgcgca
     1381 tggctgaaaa gacgactttt ttattataca acaccgtttt tttcatcgtt gctggccttt
     1441 cataaggggc caagattacc ggatgattaa taatgaatat actatttacg gaatcatcac
     1501 cgaatatagg tggtcaggaa ttacaggctg ttgctcaaat gaaggccctg aagaaaatgg
     1561 ggcattcagt tctgcttgtc tgcagggaaa acagcaaaat tgcttttgaa gccagtaaat
     1621 tgggaattga tatcacattc gcgttatttc gaaacagtct tcacatccct actgcatgga
     1681 gattactcgg aatagttcat ggttttcagc ccaatgcaat cgtttgtcac agtgggcatg
     1741 atagcaatat tgttggttta gtacggttat tcacttggaa acatccattc agaattatca
     1801 ggcaaaagac atatttgaca cgaaaaacaa aagttttttc aataaatcat ttttgcgatg
     1861 aggtgattgt tcccggaaca agtatgaaga cacatctgga gcaggaagga tgtcgaaccc
     1921 gggttactgt tgtgcctcca ggctttgatt tccagaaatt atacgttgat tcccgaaaca
     1981 gtttgcctcc aaatgttctt tcttggctgg cgtcccgaag gggatgcccc gttattgctc
     2041 aggtaggaat gttgcgcccg gaaaaagggc acgaatttat gttgaattta ctgttccatt
     2101 taaaaatgaa tggacgacag ttctgttggt tgattgtggg gtctggttcg cctgaactgc
     2161 gggagcattt acagtatcag attgacagta tgggcatgca tgatgatgtt tttattgctg
     2221 acaatgtttt tcctgccgcc cccgtatatc gggttgccag tctggtggtt ctgccttcag
     2281 aaaacgaatc gtttggtatg gtactggcag aagcatcggc attttctgtg cctgtactgg
     2341 ccagtcagat tggtggaatc cctgatgtta ttcagaacaa ccagaccggg acattgttac
     2401 cagcaggtaa taagcacgca tggatgtgcg ccctgaatga tttttttaat gaccctgggc
     2461 gtttttatca gatggctcgc caggcaaaac aggatataga agagcggttt gatattaata
     2521 aaactgcgtt aaaaatactc acattagcga agcacaagta acaatatgtt ttctgtaagt
     2581 aacttatcat ttatcggttt ccttaaaagg attgtttttt cctcagattc actcccgggg
     2641 aagtgggaac acagaaaatt ccggttcatg tacattttgc gatgtgctat aaatccggtt
     2701 gtcagtattc gatattatta cgaactgcgt tccttgccgt gcattgagga tattctggca
     2761 atacacccca cgttgccagc aagaattcat cgcccttatt tgcataaagg ggggcgcgcc
     2821 tggacccgtg gacaatatat tcttgagcat tatcgctttg tgcaaaattt gccagaaaaa
     2881 tattctaaat ttttgtttcc acaaaaatcg gtatcattag tccaattcat cgggaaagat
     2941 ggagagaatt ttgatatcca gtgttctccc agtggttttg accgggaagg agagttgatg
     3001 ttgtcattgt tttacaataa aacagttatt acccggttaa cattttcagt cattctgact
     3061 caaaatggac acattgcttt tattggcgga ttacagggag cccctaaaaa taccggacct
     3121 gatgttattc ggtgcgcaac ccgggcctgt tatgggattt tcccaaaacg gattattttt
     3181 gaagcatttt gtgcgttgat gaaagcttgc aatatctctg agtgtctggc agtcagtgag
     3241 cacagtcatg ttttccggca attgagatac tggtatcaga aacgcaaaac ctttgttgcg
     3301 gtctatagtg atttctggga gtctgtagca ggaaaaacct gtggtgactg gtacagatta
     3361 ccaacccagg tgattcgaaa gccgctaagc gatatagcca gtaaaaaacg ctctgagtac
     3421 cgaaaacgat acgctttgct ggattatatc catgaaacta ctatccgctc tttggatgca
     3481 tatcctgtac actcagaaca tcaggattta aattaaggtt tgatgtattc tctgaataaa
     3541 acagtaatga taattttggt agaggcattc gcactaaata atgaaaaaat ataaatctga
     3601 gtttattcct gaatttaaga aaaattatct ttcccctgtt tactggtcta catggttcct
     3661 tttgggaatg attgcaggta tttcaatgtt tcccccttca ttcagagatc ctgtcttggc
     3721 aaaaataggg cgttgggcgg gcagattgag caaaaaagct cgtcgcaggg cgacgattaa
     3781 tttatcgctt tgtttcccag aaaagagtga tacagaacgg gaaataattg tcgacaaaat
     3841 gtttgccaca gcattgcaat ccatagtgat gatggcagaa ctggcaattc gtggtccgga
     3901 aaagttccag aaacgagtgt tctggaaagg cctcgaaatt cttgaggaaa ttcgatacaa
     3961 taacaaaaat gtgatttttc tggttcccca tggctggagc gtggatattc ctgcaatgtt
     4021 gctggcagct cagggggaaa aaatggccgc catgtttcat cagcaacgaa atccagtgat
     4081 tgattatgtc tggaattctg tacggcgtaa attcgggggg cgcttacatt cccgggagga
     4141 tgggataaaa ccatttattc agtcagtacg ccagggatac tgggggtatt accttccaga
     4201 tcaggatcat ggtcctgaat acagtgaatt tgctgatttt tttgcgacct ataaagcgac
     4261 attaccaatt attggacgtc tgatgaacat cagtcaggct atgattatac cgcttttccc
     4321 ggtttatgat gaaaaaaaac atttcctgac tattgaagtt cggccaccaa tggatgcatg
     4381 cattgccagc gcggacaata aaatgattgc ccgacaaatg aacaaaacag tggaaatttt
     4441 ggtggggtca catccggaac agtatatctg ggttttaaaa ttgttaaaaa cgcgcaaatc
     4501 aaacgaagcg gacccgtacc cttgaaatta taaagtacag gtatttccac tagttgtttc
     4561 ttacaggtta ccaatcgaaa cacaatcccc cttccgtgtg ttgcccgttt ggcacggagg
     4621 actgtgtaga tgcagttcgt taaatttaat ttatgcctaa atagctgcgc ttaataccgc
     4681 tacacttttg ccagtccatg tttgcctccg gggaatgggc tgacggtttc cataaaatgg
     4741 cgaacttttt tcaacagttg ccacattgag cggcactgat gattacgcgt tattgtgtcg
     4801 tgaagtgcct gccatagccg ttcagcatga ttcacccatg gcgagtaaac cggctgataa
     4861 atgaccctga acttcgggtt ctccttcagc cagctctgtg tttcccggct tttgtggata
     4921 atgtagttgt ccacgatcag cgtgatggtt ttcgcccgac ggtatgtcgc tttaagccgc
     4981 ttcagcaggc tgatgaacag cgccgaactt ttgctgttgc cgcccacata gctgacttta
     5041 cctgtcccgc tgtgcagcgc tccggccaga taatattttt cattctgtcc cggcgtgacc
     5101 acccgttttt gctgtccgcg cagttaccag tccgcaccga ttttgggatg aagatggata
     5161 tccacttcat cttcataaaa gacctgatgt tctgcgctgc attcgtccag tgctttatgg
     5221 attgctgcca tcttttcatc tttatgcggg tcacggatac gcagagttgg cgcagccctt
     5281 cgccacacaa tccccgcaga cggcaa
//
LOCUS       DADMHM010000235         5292 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.240, whole genome shotgun sequence.
ACCESSION   DADMHM010000235 DADMHM010000000
VERSION     DADMHM010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5292)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5292)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5292
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.240"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            59..709
                     /gene="inaA"
                     /locus_tag="JN125_003760"
                     /pseudo
     CDS             59..709
                     /gene="inaA"
                     /locus_tag="JN125_003760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416740.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide kinase InaA"
     gene            complement(763..1017)
                     /gene="yfaE"
                     /locus_tag="JN125_003761"
     CDS             complement(763..1017)
                     /gene="yfaE"
                     /locus_tag="JN125_003761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-like diferric-tyrosyl radical
                     cofactor maintenance protein YfaE"
                     /protein_id="HAY8873370.1"
                     /translation="MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGS
                     CRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM"
     gene            complement(1017..2147)
                     /locus_tag="JN125_003762"
     CDS             complement(1017..2147)
                     /locus_tag="JN125_003762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006683700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase 1 subunit
                     beta"
                     /protein_id="HAY8873371.1"
                     /translation="MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQ
                     LSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISI
                     PELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDE
                     LIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFA
                     FAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDL
                     FVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIP
                     WINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL"
     gene            complement(2294..4579)
                     /gene="nrdA"
                     /locus_tag="JN125_003763"
     CDS             complement(2294..4579)
                     /gene="nrdA"
                     /locus_tag="JN125_003763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005129392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HAY8873372.1"
                     /translation="MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELR
                     SHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPAL
                     YDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNR
                     VTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTP
                     TRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHT
                     GCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMD
                     YGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQR
                     VKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLN
                     DVNDENGEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAM
                     GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACP
                     WFNETTYAKGILPIDTYKKDLDAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSET
                     SSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLV
                     GIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAED
                     AQDDLVPSIQDDGCESGACKI"
BASE COUNT         1303 a         1257 c         1376 g         1356 t
ORIGIN      
        1 tttcctcagg taaccaccta tagtcattgt cgttaataaa aacgacaggc gatagggtat
       61 ggcagtttca gcaaagtacg acgaatttaa tcactggtgg gcaacagagg gcgactgggt
      121 tgaagagcct aactatcgcc gtaatggtat gagcggggtg caatgcgtcg agcgcaacgg
      181 caaaaagctg tatgtaaagc gcatgacgca tcatctgttt cattctgtac gttatccgtt
      241 cggccgacca acgattgtcc gtgaggttgc ggtaattaaa taactggaac gggccggtgt
      301 catcgtgcct aagatcgttt ttggtgaagc ggtgaaaatt gaggatgaat ggcgagcgtt
      361 gctggtgact gaagatatgg cggggttcat cagcattgct gactggtatg cccagcatgc
      421 agtatcgcct tattctgacg aagtacggca agccatgttg aaagcagtgg cgctggcgtt
      481 taagaaaatg catagcatta atcgtcagca tggctgttgt tatgttcgcc atatctatgt
      541 gaaaacagaa ggtaaggcag aagctggttt tcttgacctg gagaaaagtc gtcgccgctt
      601 gcgtcgcgat aaagcgatta atcatgactt ccgccagctg gaaaaatatc tggagccaat
      661 ccccaaagcg gactgggagc aggtgaaagc gtattactac gccatgtaat cgttgtaggc
      721 cagataagac gcataagcgt tgtatctggc actacaacca attcacatct cgatttcaat
      781 atcgcctttt gcccggcaac aacagggcaa aatttccccc ggctgaataa aggctaacgg
      841 ttcggcaatc cagtcaactt gacctgcaac caggcgtgtg cgacaggagc cgcagtaacc
      901 ttcgcgacac tggtactcaa ccgccacatt gtgggattcc agcgctgcca gaagggaagg
      961 gtgttcatcc tggcacagca gttgtgtgcc agtgatgcgc agggtaacgc gggccatcag
     1021 agctggaagt tactcaaatc gtcggtgtcc acttccgagt caatctgccc gaccagataa
     1081 gaactgactt ccacttcctg cggagcaacc tgcacgttat cagacaccag ccaagtgttg
     1141 atccacggga tcgggttgga gcgcgtctgg aacggcagat ccaaaccgac tgcctgcata
     1201 cggatattgg tgatgtattc aacgtactgg cagagaatgt ctttattcag accaatcatc
     1261 gaaccgtcgc ggaacagata atccgcccag tctttctcct gttgagctgc ctgaacaaac
     1321 aggtcatagc actcctgctt acactcttcg gcaatttccg ccatctcagg atcgtccgcg
     1381 ccgctgcgca gcagattcag catatgctgg gtgccggtca ggtgcagggc ttcgtcgcgg
     1441 gcaatcaggc gaataatttt ggcgttgcct tccatcaatt cgcgttctgc aaaggcaaag
     1501 gaacaagcaa agctgacgta gaagcggatc gcttccagcg cgttaacgct catcaggcaa
     1561 agatacagtt ttttcttcag ctcgcgcagg ctaacggtta cggttttacc gttaacggtg
     1621 tgggtgcctt cgcccagaag gtgccagtag ctggtcattt cgatcagttc atcgtaatag
     1681 ctggagatcc cttccgcacg tttctggatc tgctcgttgg tgacgatatc gtcaaacaca
     1741 acagacggat cgttaacgat attacgaatg atatgagtat aggaacggga atgaatcgtt
     1801 tctgagaacg cccaggtttc gacccaggtt tccagttccg gaatagaaat aagcggcaat
     1861 agcgccacgt tcggactacg accctgaatg gaatccagca gcgtctgata tttcaggttg
     1921 ctgataaaaa tgtgtttttc gtgctccggc agcgcctggt aatcgatacg gtcgcgggag
     1981 acgtcaactt cttccggacg ccagaagaaa gagagctgct tttcgatcag cttttcgaag
     2041 atgtcatatt tttgctgatc gtagcgggcc acgttgaccg gctgaccaaa gaacatcggt
     2101 tctttgagct gatcattttt cgtctgtgaa aaggtggtat atgccatgag tgtgtcctgt
     2161 tgggagttta atgccggata aggcatttta cgccgcatcc tgtgcctgat gcgacgctgg
     2221 cgcgtcttat caggcctaca aatccgagcc gtaggccgga taaggcgttc acgctgcatc
     2281 cggcatctca atatcagatc ttacatgcgc cgctttcgca gccatcgtcc tggattgacg
     2341 gtaccagatc gtcctgcgcg tcttcagcgc cgtcacgggt gttctgataa tacagcgttt
     2401 tgaccccgaa tttgtaggcg gtgagcaggt ctttcagcaa ctgctgcatc ggcacttttc
     2461 ctgacgggaa acgtgacgga tcgtagttgg tgttagcaga gatcgactga tcgataaatt
     2521 tctgcatgat acctaccagt tgcaggtagc catcgttacc cggcatttcc cacagcagct
     2581 cataggcgtc gtgcaggtgc tcgtagtccg gcaccacctg gcgcaaaata ccgtctttcg
     2641 acgctttgat gctgacgtaa ccgcgcggcg gttcaatacc gttagtggcg ttagagatct
     2701 gcgaagaggt ctcggacggc atcagggcag aaagcgtgga gttacgcagg ccgtgcgttt
     2761 tgattgattc acgcaatgct tcccagtcgt aatgcagcgg ctcattagcg atggcatcca
     2821 gatctttctt ataggtatcg atcggcagga tccctttcgc gtaagtggtt tcgttaaacc
     2881 acgggcacgc gccttgctct ttagccagct cattagacgc tttcagcagg taatactgaa
     2941 tcgcttcgaa ggttttatgc gtcaggttgt tggcgctgcc gtcggagtag cgtttaccgt
     3001 gcttcgccag gtagtaagcg aagttgatca caccaatacc cagcgtacga cgacccatcg
     3061 ctccacgttt ggcggccggg atcgggtaat cctgataatc cagcagcgcg tcaagtgcac
     3121 gaaccgccag aattgccagc tcttccagtt catccaggtt attaattgcg cccaagttga
     3181 aagcagacag cgtacacagc gcgatttcac cgttctcgtc gttgacgtcg ttcagcggtt
     3241 tggtcggcag ggctatctcc aggcacaggt tagactgacg cactggcgcg atggccggat
     3301 caaacgggct atgggtatta cagtggtcaa cgttctgaat atagatacga ccggtagacg
     3361 cacgttcctg catcatcagc gagaacagct caacggcttt cacacgctgc ttgcggatgc
     3421 tgtcgtcttt ctcatatttg gtatacagac gttcaaactc ttcctgatcg gcgaagaacg
     3481 cgtcgtacag ccccggtacg tcggacgggc tgaacagggt gatatcttca cctttcagca
     3541 gacgggtata catcagtttg ttgatttgta ccccgtagtc catatgacgc acgcggttgc
     3601 cttccacacc acggttgttt ttcaacacca gcaggctttc cacttccaga tgccacatcg
     3661 ggtagaacag cgttgccgca ccgccgcgca caccgccctg agagcaggat ttcaccgctg
     3721 tctggaaatg tttgtagaac ggaatgcagc cggtatggaa cgcttcacca ccgcgaatcg
     3781 ggctacccag cgcacgaata cgcccggcgt tgatgccgat cccggcacgc tgggaaacgt
     3841 atttaacaat cgcgctggag gtggcgttga tggaatccag gctgtcaccg cactcgatca
     3901 gtacgcagga gctgaactga cgagtcgggg tacgcacgcc ggacatgatt ggcgtcggca
     3961 gcgaaatttt aaatgtggaa accgcgtcgt aaaaacgctt cacatattgc aggcgcgttt
     4021 cacgcgggta gttcgagaac aggcacgcgg caaccagaat ataaaggaac tgggcgctct
     4081 catagatttc gccggtcacg cggttctgta ccagatattt gccttccagc tgcttaacgg
     4141 cagcataaga gaaggtcata tcacggtcgt gatcgataaa cgtgtccatc tgcttgaact
     4201 cttcttccgt gtagtcttcc agcagatgat tatcgtattt gcccatctcg accattttca
     4261 ccacgtggtc gtacagcgca ggcggctcaa actggccgta ggctttttta cgcaggtgga
     4321 agatcgccag gcgcgcggcg agatactgat aatccggcgc atcacgggag atcaggtctg
     4381 cggcagcctt gataatggtt tcgtggatgt cagaggtctt gataccgtca taaaactgaa
     4441 tgtgggagcg cagctcgacc tgggaaatcg aaacgttatg cagtccttct gccgcccaat
     4501 ccagaacgcg atggattttg tcgagattga tgcgctctgt gctaccgtcg cgctttgtca
     4561 ccagcagatt ctgattcatg tatgtcgtac ctgtttttgg aattctttcc gcaatagttt
     4621 catgcagact acctgtagta cgggaagctg cttagaacac tatatatagg gggtatgttt
     4681 gggattcact gcaagatagt gtgaaaatgg ccctcttgca agtgcataac tttgtggata
     4741 actcaggaag gaaaaagtgg ctttcgcgca ccttaggtca gacaaggtgt ccgggaaagt
     4801 caatgggaag agaaaaattt gttaaaaata actgttcggc gatttcttga acggcagaat
     4861 aggttggata aattgatata gatggtttat taatcttttt gctaatgatt gcaaaaattg
     4921 atctaagcac gagtcatcac ataatctgat gtatcagttg tggtcaatat ataagcgaat
     4981 gtaagcgatt gttgatgtcg aaatggttgt tttctattcg gttattgtta aatgcgaagc
     5041 cattttgtta atttacctta tattataaaa aaattattca ttactttaat ttagtttaaa
     5101 tataactggt atcccttaag gttattaact tgaattatga cgcactgata ttattcatca
     5161 aataataaca aaatagccat tgcatcgggt tggacaattt acaaaagaaa gataacccat
     5221 attgtataat gcgtttaaat atgccgtctt atataaaatg atggtcagat taatatgcgg
     5281 attatctttc ta
//
LOCUS       DADMHM010000236         5214 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.241, whole genome shotgun sequence.
ACCESSION   DADMHM010000236 DADMHM010000000
VERSION     DADMHM010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5214)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5214)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5214
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.241"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..577)
                     /locus_tag="JN125_003764"
     CDS             complement(<1..577)
                     /locus_tag="JN125_003764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000824385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HAY8873373.1"
                     /translation="MKRKVLAMLVPALLVAGAANAAEIYNKDGNKVDFYGKMVGERIW
                     SNTDDNNSENEDTSYARFGVKGETQITSELTGFGQFEYNLDASKPEGSNQEKTRLTFA
                     GLKYNELGSFDYGRNYGVAYDAAAYTDMLVEWGGDSWASADNFMNGRTNGVATYRNSD
                     FFGLVDGLNFAVQYQGKNSNRGVTKQNGDGYA"
     gene            1144..1509
                     /locus_tag="JN125_003765"
     CDS             1144..1509
                     /locus_tag="JN125_003765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416472.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HAY8873374.1"
                     /translation="MEKCDFYHIIVLSLNFPDYLKMEYGSTKMEERLSRSPGGKLALW
                     AFYTWCGYFVWAMARYIWVMSLIPDAPVSGFESDLGSTAGKWLGALVGFLFMALVGAL
                     LGSIAWYTRPRPARSRRYE"
     gene            1549..2244
                     /locus_tag="JN125_003766"
     CDS             1549..2244
                     /locus_tag="JN125_003766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphohydrolase"
                     /protein_id="HAY8873375.1"
                     /translation="MDLQHWQAQFENWLKNHHQHQDAAHDVCHFRRVWATAQKLAADD
                     DVDMLVILTACYFHDIVSLAKNHPQRQRSSILAAEETRRLLREEFEQFPAEKIEAVCH
                     VIAAHSFSAQIAPLTTEAKIVQDADRLEALGAIGLARVFAVSGALGVALFDGEDPFAQ
                     HRPLDDKRYALDHFQTKLLKLPQTMQTARGKQLAQHNAHFLVEFMAKLSAELAGENEG
                     VDHKVIDAFSPAG"
     gene            2311..3729
                     /locus_tag="JN125_003767"
     CDS             2311..3729
                     /locus_tag="JN125_003767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA cytosine methyltransferase"
                     /protein_id="HAY8873376.1"
                     /translation="MQENISVTDSYSTGNAAQAMLEKLLQIYDVKTLVAQLNGVGENH
                     WSAAILKRALANDSAWHRLSEKEFAHLQTLLPKPPAHHPHYAFRFIDLFAGIGGIRRG
                     FESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHKEGVSDEAAAEH
                     IRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRP
                     AMFVLENVKNLKSHDQGKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHR
                     ERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPVLWKYLYR
                     YAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEILIDRGWDMAKGEKDFDDP
                     LNQQHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLL
                     EPKIKQAVALRQQEAQHGRRSR"
     gene            3710..4180
                     /locus_tag="JN125_003768"
     CDS             3710..4180
                     /locus_tag="JN125_003768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="very short patch repair endonuclease"
                     /protein_id="HAY8873377.1"
                     /translation="MADVHDKATRSKNMRAIATRDTAIEKRLASLLTGQGLAFRVQDA
                     SLPGSPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRDIS
                     RLQELGWRVLIVWECALRGREKLTDEALTERLEEWICGEGASAQIDTQGIHLLA"
     gene            complement(4169..5089)
                     /gene="yedA"
                     /locus_tag="JN125_003769"
     CDS             complement(4169..5089)
                     /gene="yedA"
                     /locus_tag="JN125_003769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="drug/metabolite exporter YedA"
                     /protein_id="HAY8873378.1"
                     /translation="MRFRQLLPLFGALFALYIIWGSTYFVIRIGVESWPPLMMAGVRF
                     LAAGILLMAFLLLRGHKLPPLRPLLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVV
                     VATVPLFTLCFSRLFGIKTRKLEWVGIAIGLAGIIMLNSGGNLSGNPWGAILILIGSI
                     SWAFGSVYGSRITLPVGMMAGAIEMLAAGVVLMIASMIAGEKLTALPSLSGFLAVGYL
                     ALFGSIIAINAYMYLIRNVSPALATSYAYVNPVVAVLLGTGLGGETLSKIEWLALGVI
                     VFAVVLVTLGKYLFPAKPVVAPVIQDASSE"
BASE COUNT         1405 a         1242 c         1327 g         1240 t
ORIGIN      
        1 acgcatagcc atcaccgttt tgtttagtaa cgccacgatt gctgttctta ccttgatatt
       61 gcacagcaaa attcagacca tcaaccagac caaagaaatc agagttacgg taggttgcaa
      121 caccgttggt acgaccgttc atgaagttgt cagcggaagc ccaggaatca ccaccccatt
      181 caactaacat atcggtataa gctgcggcat cataagcaac accgtagtta cgaccatagt
      241 cgaaagatcc taactcgtta tatttcaaac ctgcgaaggt taaacgggtt ttttcctgat
      301 tagagccttc gggcttgctg gcgtcgaggt tgtattcaaa ctgaccaaaa ccagtcagtt
      361 cgctggtgat ttgggtttca cctttaacac cgaaacgagc ataggaggta tcttcgtttt
      421 cgctgttatt atcatcagta tttgaccaga tgcgttcgcc aaccatcttg ccgtagaaat
      481 caactttatt gccatcttta ttgtaaattt cagccgcatt tgctgcgcca gcaactaata
      541 acgccgggac cagcattgcc agaacttttc ttttcattat gtattccctt gtgattataa
      601 tcttcatgaa tatatcaata agtgccgtta tccaaaaaaa agcacatttg gatactattc
      661 tatgaagttc attttatttt aagtgttaca tgcaacaaat gtatttaaaa gatttcaaaa
      721 tgtttctaat ctatttaatg taattcagaa ttatgaattc taaatataaa tattcatgaa
      781 aattataaat gtatatcaat atgttatgag ttgagcggaa acataggggg tatcaatgat
      841 tgttgcgcca aacggctggt gtgatcaggc gcacattaat gaaggcataa aaaaaagccg
      901 gcatcatgcc ggcccaaaaa atataaacaa gacgataaaa ggctaataac ggaagcatca
      961 tgacacagaa taataaaaag gtataattgt aatcagtgct aatatattga ttaaatgaat
     1021 taataaagcc gatatcaaag ataaataaaa tcgctcaaaa cgatttttcc tgtattcact
     1081 gccgttgcgc aaaatttatc tatttgttca aaaaatgatt gagtcttgac tggctcatcc
     1141 aatgtggaaa aatgtgactt ttatcacata atagtactaa gtctgaattt tccggattat
     1201 ctcaaaatgg aatacggttc gacaaagatg gaagagagac tctctcgcag ccctggcggc
     1261 aaactggctt tgtgggcttt ctatacatgg tgtggctatt tcgtctgggc aatggcgcgt
     1321 tacatctggg tgatgagcct gatccccgat gcccccgtgt cgggatttga aagcgattta
     1381 ggctctaccg cgggaaagtg gttaggggca ctggtcggat ttttatttat ggctctggtc
     1441 ggggcattgt taggcagcat tgcctggtac acccgacctc gtcccgcacg tagcagacgc
     1501 tatgaataaa aactgctaag gtggcgactc tttggcaacg gagcgcgtat ggacttacaa
     1561 cactggcagg cacagttcga aaactggttg aaaaaccatc atcagcacca ggacgcggcc
     1621 catgacgtgt gtcattttcg ccgcgtctgg gctacggcac agaagctggc ggcagatgac
     1681 gatgtcgata tgctggtgat tttaaccgcc tgttattttc acgatattgt gagcctggcg
     1741 aaaaatcatc cgcaaaggca gcgttcttca atcctggcgg cagaagagac gcgtcgcctg
     1801 ctccgtgaag agttcgagca atttccggcg gagaaaatcg aggccgtttg tcatgtcatt
     1861 gccgctcaca gtttcagcgc gcaaatcgcc cccttaacaa cggaagctaa aatcgtccag
     1921 gatgcggatc ggctggaagc cctgggggcg attggcctgg cgcgcgtgtt tgccgtttca
     1981 ggggcattgg gcgtggcgct gtttgatggt gaagatccgt tcgcacagca tcgcccgctt
     2041 gatgataaac gctacgcgct ggatcatttc cagactaagt tgctgaagct accgcaaacc
     2101 atgcaaaccg caagaggcaa gcagctggcg cagcacaacg cgcatttttt agtcgagttt
     2161 atggcgaagc tcagtgccga actggcgggg gagaatgaag gtgtcgatca caaggtgata
     2221 gatgcgtttt cacccgcggg ataagcgcgt ggccctaaat ggctgtaatt atgttaacct
     2281 gtcggccatc tcagatggcc ggttaaatct atgcaggaaa atatatcagt aaccgattca
     2341 tacagcaccg ggaatgccgc acaggcaatg ctggagaaac tgctgcaaat ttatgatgtt
     2401 aaaacgctgg tggcgcagct taatggtgtg ggtgagaatc actggagcgc ggcaatttta
     2461 aaacgtgcgc tggcgaatga ctcggcatgg caccgtttaa gtgagaaaga gttcgcccat
     2521 ctgcaaacgt tgttacccaa accaccggca catcatccgc attatgcgtt tcgctttatc
     2581 gatctatttg ccggaattgg cggcatccgt cgcggttttg aatcgattgg cggacaatgc
     2641 gtgtttacca gcgaatggaa caaacatgcg gtacgcactt ataaagccaa ccattattgc
     2701 gatccggcga cgcatcattt taatgaagat atccgcgata tcaccctcag ccataaagaa
     2761 ggcgtgagtg atgaggcggc ggcggaacat attcgtcaac acattcctga acacgatgtt
     2821 ttactggccg gtttcccttg tcagccattt tcgctggctg gcgtatcgaa aaagaactcg
     2881 ctcgggcggg cgcacggttt tgcctgcgat acccagggca cgctgttttt tgatgtggta
     2941 cgcattatcg acgcgcgtcg tccggcgatg tttgtgctcg aaaacgtcaa aaacctgaaa
     3001 agtcacgacc agggtaaaac gttccgcatc atcatgcaga cgctggacga actgggctat
     3061 gacgtggctg atgcagaaga taacgggccg gacgatccga aaatcatcga tggtaaacat
     3121 tttctgccgc agcaccgtga acgcatcgtg ctggtgggtt ttcgtcgcga tcttaatctg
     3181 aaagccgatt ttactctgcg tgatatcagc gaatgtttcc ctgcacagcg agtgacgctg
     3241 gcgcagctgt tggacccgat ggtcgaggcg aaatatatcc tgacgccggt gctgtggaag
     3301 tacctctatc gatatgcgaa aaaacatcag gcgcgcggta acggcttcgg ttatggaatg
     3361 gtttatccga acaatccgca aagcgtcacg cgtacgctgt ctgcgcgtta ttacaaagat
     3421 ggcgcggaaa ttttaatcga tcgcggctgg gatatggcca aaggtgagaa agactttgac
     3481 gatccgctga atcagcaaca tcgtccacgt cggttaacgc ctcgggaatg cgcgcgctta
     3541 atgggttttg aagcgccggg agaagcgaaa ttccgcattc cggtttcgga cactcaggcc
     3601 tatcgccagt tcggtaactc ggtggtcgtg ccggtctttg ccgcggtggc aaaactgctt
     3661 gagccaaaaa tcaaacaggc ggtggcgttg cgtcagcaag aggcacaaca tggccgacgt
     3721 tcacgataag gccactcgca gcaaaaatat gcgcgcgatt gccacgcgtg atacggcgat
     3781 tgagaagcgc ctcgccagtc tgttaaccgg gcagggccta gcgtttcgcg ttcaggacgc
     3841 cagtctgccc ggaagcccgg attttgtcgt tgatgaatat cgctgcgtga tatttaccca
     3901 tggctgcttc tggcatcatc atcactgcta tctgtttaaa gtacctgcga ctcgaaccga
     3961 gttctggctg gagaagatag gtaaaaatgt tgaacgcgat cgccgcgata tcagtcgttt
     4021 gcaggaactc ggctggcgcg tactgattgt ctgggagtgt gcattacgtg ggcgcgagaa
     4081 gctgacggat gaagcgctta ccgagcgtct ggaagagtgg atctgcggcg aaggtgccag
     4141 cgcgcagatc gacacgcagg ggattcattt actcgcttga tgcgtcctga ataactggcg
     4201 caactacggg ttttgccggg aagagatatt ttcccaacgt gaccagtacc accgcgaaga
     4261 caattacgcc gagcgccagc cattcaatct tcgacagcgt ctctccgccc agtcccgtac
     4321 ccagcaagac cgcgaccacc gggttaacgt aggcgtagct ggtggcgaga gccggactga
     4381 cattacggat taaatacata taagcgttga tggcgataat cgaaccaaac agcgccagat
     4441 agccgaccgc aaggaagcct gaaagggaag ggagcgccgt cagtttttca cctgcaatca
     4501 tcgacgcgat cattaacacc acgcctgccg ccagcatctc aatcgcaccc gccatcatcc
     4561 ctacaggtaa ggtaatgcgc gagccataaa ccgagccaaa cgcccagcta atcgagccga
     4621 ttaaaatcag aatcgcgccc cacggattgc cgcttaaatt tccaccgcta ttgagcatga
     4681 tgattccggc aagcccaatg gcgataccca cccattccaa tttgcgcgtt ttaatgccaa
     4741 acaggcggct gaagcacagg gtaaagaggg gcacggttgc aaccacaacg gcggcgatgc
     4801 cggaaggaac attttgatgc tcggcaaccg tcaccatgcc attaccgaca gccagcaata
     4861 acaggccaat cagcgcggca ttgagcagcg gacgtagcgg ggggagcttg tgtccgcgca
     4921 gtagcaaaaa tgccatcaat aaaataccgg ctgccaggaa tcgaacgcct gccatcatta
     4981 acggaggcca gctttccacg ccaatccgaa tgacaaaata ggttgagccc caaatgatat
     5041 acaacgcaaa cagcgcgcca aaaagcggta acaactggcg gaaacgcata atccctcacg
     5101 gtggaaataa aaaggtggtt catagtaaac gtgaaaatca ttctgctggc gagagatata
     5161 attgcactta attgttaaaa aaatgttgac ctgtgaagca agtatcagag ctgc
//
LOCUS       DADMHM010000237         5188 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.242, whole genome shotgun sequence.
ACCESSION   DADMHM010000237 DADMHM010000000
VERSION     DADMHM010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5188)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5188)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5188
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.242"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..792)
                     /locus_tag="JN125_003770"
     CDS             complement(<1..792)
                     /locus_tag="JN125_003770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HAY8873379.1"
                     /translation="MKPAHNPSFFRSFCGLGCISRLSVEEQNITDYHRIWDNWAKEGA
                     ATEDRTQAVRLLKICLAFQEPALNLSLLRLRSLPYLPPHIQELNISSNELRSLPELPP
                     SLTVLKASDNRLSRLPALPPHLVALDVSLNRVLTCLPSLPSSLQSLSALLNSLETLPD
                     LPPALQKLSVGNNQLTALPELPCELQELSAFDNRLQELPPLPQNLRLLNVGENQLHRL
                     PELPQRLQSLYIPNNQLNTLPDSIMNLHIYADVNIYNNPLSTRTLQ"
     gene            884..970
                     /locus_tag="JN125_003771"
                     /pseudo
     CDS             884..970
                     /locus_tag="JN125_003771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015869530.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(980..1060)
                     /locus_tag="JN125_003772"
                     /pseudo
     CDS             complement(980..1060)
                     /locus_tag="JN125_003772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416850.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
     gene            1271..1360
                     /locus_tag="JN125_003773"
                     /pseudo
     CDS             1271..1360
                     /locus_tag="JN125_003773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311139.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1175 family protein"
     gene            1504..5188
                     /locus_tag="JN125_003774"
                     /pseudo
     CDS             1504..5188
                     /locus_tag="JN125_003774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311138.2"
                     /note="frameshifted; internal stop; incomplete; missing
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2-macroglobulin family protein"
BASE COUNT         1287 a         1214 c         1425 g         1262 t
ORIGIN      
        1 ttgcagagtg cgagtcgaca atggattgtt ataaatatta acatctgcat aaatgtgcag
       61 attcatgata ctgtctggca atgtgttcag ctgattgtta gggatatata gtgattgcag
      121 acgttgtgga agttcgggca gtctgtgtag ttggttttcc ccaacgttta aaagcctcag
      181 attttgagga aggggcggta gctcttgtaa tctgttatca aaagcactta gttcctgtag
      241 ttcacatggt aattctggta aggcagtaag ctggttgttg ccaacagaaa gtttttgtag
      301 agccggggga agatcaggta gcgtctccag gctattgaga agggctgaga gtgactgcaa
      361 ggaagatgga agagaaggta aacatgttaa aactctgtta agtgaaacat caagagcgac
      421 caggtgaggc ggaagagccg ggagcctgct cagtctgtta tcgctggctt taagtacagt
      481 taaggacgga gggagttctg gcagagagcg tagctcattg ctagagatgt taagttcttg
      541 tatgtgcggg ggcaggtatg ggagagagcg taatctgagt aaacttaaat tgagggctgg
      601 ctcttgaaaa gccagacata ttttcagtaa tcgaactgcc tgtgttcggt cttctgttgc
      661 agcaccttcc ttggcccagt tatcccagat gcggtgataa tccgtgatat tttgctcttc
      721 tacggataaa cgggatatac atcctaaacc acaaaaggag cggaaaaaag aaggattgtg
      781 ggcaggtttc atttattatt gatcctcatt gtttatatat taatatgttc gtgcaaatgg
      841 agtgaggatt ctttaaaaaa acgctcctgt aaatagttaa gaacaggaag aactgttggg
      901 gatgtggctg gccgaaaatg aaggggtgaa gttctggctc aatgtgctga ctgaactgaa
      961 aaaacgcggt tggtcgccct accttttcat caagccagta gtctgcccac cactgcatca
     1021 tttctctgcg cttatcgaga tactgagcat ggttgtaaat tcaactaacc cagtgcgttg
     1081 acaaaaaatt agcgcaagaa gacaaaaaat caccttgcgc taatgctctg tatcaggtca
     1141 ctaataccag ctaagtagtt gattcatagt gactgcatat gttgtgcttt gtcgcatttt
     1201 gtagtctatt atttaatctg taacaacgat aatacaatga attttaattg gtttttgtga
     1261 ttttgtcctt cttctgacat ggaaggacac ccgatggata cccaacgatt ccaatcccaa
     1321 tttcattggc atttatcgtt taaattttct ggcgcgatag cagcgtgctt gtctctgtct
     1381 cttgtgggaa cagggcttgc taatgctgat gattcgcttc cttccagtaa ctatgcgccg
     1441 cccgccgggg gaacattctt tttgcttgct gacagcagtt ttagcagcag tgaagaggcg
     1501 aaagtgcgac tggaagcgcc ggggcgtgat tatcggcgct atcagatgga agagtacggc
     1561 ggcgtggacg ttcgcctgta tcgtattcct gacccgatgg catttttgcg ccagcagaaa
     1621 aacctgcatc gcattgtggt gcaaccgcaa tatctgggcg acgggctgaa caatacgctg
     1681 acctggctgt gggataactg gtacggcaaa tctcgccgcg taatgcagcg tactttctct
     1741 tctcagtcac ggcagaatgt gactcaggca ttacccgaat tacatctcgg caatgccatt
     1801 attaaacctt cccgttatgt acagaacaac cagttttccc cgctgaaaaa atatcccttg
     1861 gtggaacagt tctgttatcc actatggcag gctaaaccgg tcgagccgca gcaaggggta
     1921 aaactggaag gcgcatccag caatttcatc tcgccgcagc cgggtaacat ttatattcct
     1981 ctcggccaac aagagccggg actgtacctc gtcgaggcga tggttggtgg gtatcgggcg
     2041 acgacggtgg tgtttgtttc cgataccgtg gctcttagca aagtgtcagg caacgagctt
     2101 ctggtgtgga ccgcgggtaa aaaacagggt gaagcgagcc cggctcagag atcttgtgga
     2161 ctgacggtct tggcgtgatg acccgcggtg tgaccgatga cagcggtacc ttgcagttac
     2221 aacatatatc gccagaacgt tcatacattc tgggtaagga tgctgaaggc ggcgtttttg
     2281 tctccgagaa cttcttctac gaaagcgaaa tctacaacac ccgcttgtat atttttaccg
     2341 atcgcccgct atatcgcgca ggcgatcgtg tcgatgttaa agtgatgggc cgcgagttcc
     2401 acgatccgtt gcattcatcc cccatcgtca gcgccccggc gaagctttcg gtgctggacg
     2461 ctaacggcag tctgttgcaa accgtcgatg tcacgctgga tgcgcgcaat ggcgggcagg
     2521 gaagtttccg cctgccagaa aatgccgttg ccggaggtta tgagttacgt cttgcttacc
     2581 gcaatcaggt ctatagcagc agttttcgcg tggcaaacta catcaagcca catttcgaga
     2641 ttggtttagc tctcgacaaa aaagagttca aaactggcga agcggtcagc ggcaaactgc
     2701 aactgctcta cccggatggc gagccggtaa aaaatgcccg cgtgcagtta agtttgcgcg
     2761 ctcagcaatt atcaatggtc ggtaacgatt tgcgttatgc cggacgtttc cccgtgtcgc
     2821 tggaaggcag cgaaacggtg tccgacgcca gcggtcatgt ggcgttaaat ctccccgccg
     2881 ccgataaacc gagccgttat ttgttaaccg tctccgccag tgacggcgcg gcgtatcgtg
     2941 tcaccaccac caaagagatc ctcattgaac gcggtctggc gcattactca ttaagtactg
     3001 ccgcacaata cagtaatagc ggcgagtcgg ttgtgttccg ttatgccgcg ctggaatctt
     3061 caaaacaggt tcctgttacg tatgaatggt tgcgtctcga agaccgcacg agccatagcg
     3121 gagagctacc gtcaggcggc aaatccttta ccgtcaattt cgctaaacct ggcaactaca
     3181 atctgacatt acgcgataaa gacggcttaa ttctcgctgg gttaagttat gccgtcagcg
     3241 gtaagggcag cacggcgcat acgggtacgg tagatatcgt ggcggataaa acgctgtacc
     3301 agccaggcga aaccgcgaag atgctgatta cctttccgga gccaattgat gaagcattat
     3361 tgacgctgga acgcgatcgc gtggaacagc agtcgctgct ttcgcatccg gcaaactggc
     3421 taacgctaca acgtttaaac gatacccagt atgaagcccg ggttccagtg agcaattcct
     3481 ttgcgcctaa catcactttt tcggtgctgt atacccgtaa tggtcagtac agttttcaga
     3541 acgccgggat caaagttgcc gttcctcagc ttgatatccg ggtgaaaacg gacaaaaccc
     3601 attaccagct tggtgaactg gtcaatgtcg aattaacctc gtcgctgaaa ggtaaacctg
     3661 tttctgcgca gctaacggta ggcgtggtcg atgaaatgat ctacgcgctg caaccagaaa
     3721 tcgcgccgaa tatcggcaaa tttttctatc cgctggggcg taacaatgtg cgtaccagct
     3781 ccagtctgtc gtttatcagc tacgaccagg cgctctccag cgagccggtt gcgcctggcg
     3841 caactaaccg cagcgagcgg cgagtaaaaa tgcttgaacg tccacggcgt gaagaggtgg
     3901 ataccgcggc atggatgccg tcactcacaa ccgataaaca aggcaaagcg tatttcacgt
     3961 tcctgatgcc tgattcgtta acccgctggc gtatcaccgc gcgtgggatg aacggcgacg
     4021 ggctggtcgg gcaggggcgt gcttatctgc gttcggaaaa aaatctctac atgaagtgga
     4081 gtatgccaac ggtgtatcgc gtgggcgaca aaccggcggc aggactgttt atcttcagtc
     4141 agcaggataa cgaaccggtg gcgctggtga ctaaatttgc aggcgctgag atgcgccaga
     4201 cgctgacgct gcacaaaggg gcgaattata tttcgctggc gcagaatatt cagcaatctg
     4261 gcttgttaag tgcagaactg caacaaaatg ggcaagtgca ggacagcatt agcacaaaac
     4321 tgtcttttgt ggacaacagc aggcccgttg aacagcagaa aaatgtcatg ctcggcggtg
     4381 gcgagaacgc gctgatgttg cccgctcagt ctcgcctggc gttcgcttgc cgatcatcaa
     4441 agtgccgccg ctaacgacat tcgtcagatg attcaggata accgtctgcg gctgatgcaa
     4501 ctggcggggc ccggagcgcg ctttacctgg tggggtgaag atggcaatgg tgacgccttc
     4561 cttacggcat ggtacgccga ctggcaggcc agctaggcgc tcggcgtaac gcaacaaccg
     4621 gaatactggc agcatatgct cgacagttat gccgagcagg cggataacat gccgttattg
     4681 catcgggcgc tggtgctggc gtgggcacag gagatgaatc tgccgtgcaa aacgttgttg
     4741 aaagggttgg atgaagctat cgcccggcgc ggaactaaag atgaagattt ctctgaggaa
     4801 gacatccgcg atatcaatga cagcctgatc ctcgatacac cggaatctcc actggcagat
     4861 gcggtggcaa acgtcttaac catgacgttg ctgaaaaaag cgcagttgaa gtccacggtg
     4921 atgccacagg ttcagcaata tgcgtgggat aaagcggcaa acagcaatca gccgctggcg
     4981 cacacggttg tgctgctcaa tagcggtggt gacgctaccc agacggccgc tattttaagt
     5041 ggtttgaccg ctgagcaatc cactattgag cgagcgctgg ccatgaactg gctggcgaaa
     5101 tatatggcga caatgcctcc agttgttttg cctgcgcctg cgggcgcatg ggctaaacat
     5161 aagttaactg gagggggcga atactggc
//
LOCUS       DADMHM010000238         5149 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.243, whole genome shotgun sequence.
ACCESSION   DADMHM010000238 DADMHM010000000
VERSION     DADMHM010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5149)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5149)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5149
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.243"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..4047)
                     /locus_tag="JN125_003775"
     CDS             complement(<1..4047)
                     /locus_tag="JN125_003775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001033182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HAY8873380.1"
                     /translation="MNKIFKVLWNPATGNYTVTSETAKSRGKKSGRSKLLISALVAGG
                     MLSSFGALANAGNDNGQGVDYGSGSAGDGWVAIGKGAKANTFMNTSGSSTAVGYDAIA
                     EGQYSSAIGSKTHAIGGASMAFGVSAISEGDRSIALGASSYSLGQYSMALGRYSKALG
                     KLSIAMGDSSKAEGANAIALGNATKATEIMSIALGDTANASKAYSMALGASSVASEEN
                     AIALGRSSVASGTDSLTFGRQSLASAANAIAIGAETEAAENATAIGNNAKAKGTNSMA
                     MGFGSLADKVNTIALGNGSQALADNAIAIGQGNKADGVDAIALGNGSQSRGLNTIALG
                     TASNATGDKSLALGSNSSANGINSVALGADSIADLDNTVSVGNSSLKRKIVNVKNGAI
                     KSDSYDAINGSQLYAISDSVAKRLGGGAAVDVDDGTVTAPTYNLKNGSKNNVGAALAV
                     LDENTLQWDQTKGKYSAAHGTSSPTASVITDVADGTISASSKDAVNGSQLKATNDDVE
                     ANTANIATNTSNIATNTANIATNTTNITNLTDSVGDLQADALLWNETKKAFSAAHGQD
                     TTSKITNVKDADLTADSTDAVNGSQLKTTNDAVATNTTNIANNTSNIATNTTNISNLT
                     ETVTNLGEDALKWDKDNGVFTAAHGTETTSKITNVKDGDLTTGSTDAVNGSQLKTTND
                     AVATNTTNIATNTTNISNLTETVTNLGEDALKWDKDNGVFTAAHGNNTASKITNILDG
                     TVTATSSDAINGSQLYDLSSNIATYFGGNASVNTDGVFTGPTYKIGETNYYNVGDALA
                     AINSSFSTSLGDALLWDATAGKFSAKHGTNGDASVITDVADGEISDSSSDAVNGSQLH
                     GVSSYVVDALGGGAEVNADGTITAPTYTIANADYDNVGDALNAIDTTLDDALLWDADA
                     GENGAFSAAHGKDKTASVITNVANGAISAASSDAINGSQLYTTNKYIADALDGDAEVN
                     ADGTITAPTYTIANAEYNNVGDALDALDDNALLWDETANGGAGAYNASHDGKASIITN
                     VANGSISEDSTDAVNGSQLNATNMMIEQNTQIINQLAGNTDATYIQENGAGINYVRTN
                     DDGLAFNDASAQGVGATAIGYNSVAKGDSSVAIGQGSYSDVDTGIALGSSSVSSRVIA
                     KGSRDTSITENGVVIGYDTTDGELLGALSIGDDGKYRQIINVADGSEAHDAVTVRQLQ
                     NAIGAVATTPTKYFHANSTEEDSLAVGTDSLAMGAKTIVNGDKGIGIGYGAYVDANAL
                     NGIAIGSNAQVIHVNSIAIGNGSTTTRGAQTNYTAYNMDAPQNSVGEFSVGSADGQRQ
                     ITNVAAGSADTDAVNVGQLKVTDERVAQN"
     gene            complement(4091..4447)
                     /locus_tag="JN125_003776"
     CDS             complement(4091..4447)
                     /locus_tag="JN125_003776"
                     /inference="COORDINATES: protein motif:HMM:NF023053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3251 domain-containing protein"
                     /protein_id="HAY8873381.1"
                     /translation="MALAGRVLSIDATENGSVIHISLVNLLSTPISNIGFNATWGGEK
                     PVDAKEFARWQQLLFNTSMKSTLKLLPGQWQDINLTLKGVSPNNLGYLKLAINMENIQ
                     FDNLPSAENRQKRSKK"
BASE COUNT         1217 a         1224 c         1184 g         1524 t
ORIGIN      
        1 attttgcgct acgcgctcat cagtgacttt caactgaccc acgttaaccg catcggtatc
       61 cgctgaacca gctgcgacgt ttgtgatctg acgttgacca tccgcactac cgactgagaa
      121 ttcaccgaca gagttctgcg gtgcgtccat gttgtaggcg gtataattgg tttgagcgcc
      181 acgagtggtc gtagaaccat tacctatcgc aatactgttg acatgaatga cttgcgcatt
      241 gctaccaatg gcaatgccgt taagtgcatt cgcgtccacg taggcaccat aaccgatacc
      301 aataccttta tcgccattca cgatggtttt cgcacccatt gccagcgagt cagttcccac
      361 tgccagtgaa tcttcttccg ttgaattagc gtggaagtat ttagtcggcg tggttgcgac
      421 cgcaccaatc gcattctgca attgacgaac cgtaacggcg tcatgggctt cggaaccatc
      481 ggctacgttg atgatttgac gatatttacc gtcatcaccg atagacaatg caccgagcag
      541 ttcgccatcc gtggtgtcgt aaccaataac aacgccattt tccgttatgc tggtgtcacg
      601 ggagcctttg gcaatcactc ggctggaaac agagctgcta cctagggcga tacccgtatc
      661 aacgtcgctg tagctgccct gaccaatagc tacgctgcta tcgcctttgg cgacagagtt
      721 ataacctata gctgtagcgc caacaccctg tgcgctggcg tcgttgaacg ctaagccgtc
      781 gtcgttagta cgcacatagt taatacccgc accgttttct tggatatagg ttgcgtcggt
      841 gttaccagcg agctgattga taatttgggt gttctgctca atcatcatat tcgtcgcatt
      901 caactgagaa ccgttcactg catcggtact gtcctcacta atactgccat tagcgacatt
      961 agtgatgatg ctggctttac cgtcatggct ggcattgtag gctccagcac cgccattggc
     1021 agtctcatcc cacagcaggg cgttatcatc aagcgcatcc agggcgtcac cgacgttgtt
     1081 gtactcggcg ttcgcaatgg tgtaagtcgg tgcggtgatg gtgccgtcag cgttgacttc
     1141 tgcgtcacca tccagcgcat cagcgatgta cttattggtg gtatagagtt gtgagccgtt
     1201 aatcgcgtcg ctgctggcag cagagattgc accgttagcg acgttagtga ttacactggc
     1261 agttttatct tttccatgag cggcgctaaa tgcaccattt tcaccggcgt ccgcatccca
     1321 gagcagagcg tcgtcaagag tggtatcgat agcattcagg gcatcaccga cattatcgta
     1381 atcagcatta gcaatggtgt acgtcggcgc agtgatggtg ccgtctgcat tgacttcggc
     1441 accacccccc agcgcatcaa caacataact gctcacgccg tggagttgtg agccgtttac
     1501 tgcgtcagaa ctggagtctg aaatttcacc atctgcgaca tcagtgatca cgcttgcgtc
     1561 accattagta ccgtgtttgg cactgaattt acctgcggtg gcatcccaaa gcagagcatc
     1621 gccgagagac gtgctaaatg aggagttaat cgcagccagt gcatcgccga cgttataata
     1681 atttgtttca ccgattttgt aggttggacc ggtaaacaca ccgtcagtat tcacagaagc
     1741 attgccgccg aagtaggtgg cgatattgct gcttaagtca taaagctggc taccgttaat
     1801 ggcatcggaa ctggttgcag tgactgtgcc gtccaggata ttggtgattt tgctggcggt
     1861 attgttgcca tgagctgcag tgaagacacc attgtcctta tcccatttca gcgcatcctc
     1921 accaagatta gtcaccgtct cagtcagatt agagatgttg gtggtgttag tggcgatatt
     1981 ggtggtattc gtcgccacgg catcgttggt ggttttcagc tgagagccgt taacggcatc
     2041 ggtgctgcca gtcgtcaggt cgccatcttt aacgttggtg attttgctgg tggtctcggt
     2101 gccatgagct gccgtgaata caccattgtc cttatcccat ttcagcgcat cctcaccaag
     2161 attagtcacc gtctcagtca gattagagat gttggtggtg ttagtggcaa tattggaagt
     2221 gttattggcg atattggtgg tattcgtcgc cacagcatcg ttggtggttt tcagctgaga
     2281 gccgttaaca gcatcagtgc tgtcagccgt caggtcggca tctttaacgt tggtgatttt
     2341 gctggtggta tcctggccgt gagctgcact gaatgccttt ttagtttcgt tccagagcag
     2401 ggcatcagcc tgaaggtcac caacggaatc cgtcaggttg gtgatattgg tggtattggt
     2461 ggcaatattt gccgtattcg tggcaatgtt gctggtatta gtagcgatat tggcggtgtt
     2521 ggcttcgaca tcgtcattgg tagctttcag ttgggaaccg ttaaccgcat ccttactgga
     2581 ggctgaaatc gtgccatccg caacatcggt gattacgctg gcagttgggc tactagtacc
     2641 atgagcagca ctgtatttgc ctttggtttg gtcccattgc agggtgtttt catcaagtac
     2701 agcgagcgca gcccctacgt tatttttgct accatttttt aaattgtagg ttggtgctgt
     2761 aacagtaccg tcatcaacat ctactgcagc ccctcctcca agcctttttg ctaccgagtc
     2821 gctaatggca taaagctgtg aaccattaat ggcatcgtaa ctgtcagact tgatcgcgcc
     2881 atttttcaca ttaacgatct tgcgttttaa tgaactattg ccgacagaga cggtattgtc
     2941 taaatccgca atggaatctg cgcccagcgc gacagagtta ataccgttgg cactgctatt
     3001 actaccaagc gcaagactct tatcaccagt tgcattactg gctgtgccta aggcaatggt
     3061 gtttaagcct ctcgactggc taccattacc cagagcgatg gcatccacgc catcagcttt
     3121 gttgccctgg cctatggcga ttgcattatc tgccagagcc tggctgccat ttcctaatgc
     3181 gatagtattg actttatcgg caaggcttcc gaaccccatt gccatgctat tagtcccttt
     3241 tgccttcgca ttattgccaa tagcagttgc attttcagcg gcttcggtct cagcacctat
     3301 cgcaatagcg ttcgctgcgc tggcaagtga ttgtctgcca aatgtgaggc tgtcagtacc
     3361 gctagctaca ctgctacgcc ccagggcaat tgcgttttct tcagatgcga cgctacttgc
     3421 tcccagcgcc attgaatacg cttttgacgc attggcggtg tcgccaagag caatactcat
     3481 aatctcagta gctttagtgg catttcccag ggcaatggcg tttgctcctt ccgctttgga
     3541 agagtccccc atagcaatag acaatttacc caatgctttt gaataacggc cgagggccat
     3601 tgagtattgg cccaatgaat acgaagaggc acccagtgct atacttctat cgccttctga
     3661 tattgcacta accccaaagg ccattgatgc accaccaatc gcatgggttt ttgacccgat
     3721 ggcagagcta tattggcctt cagctatagc gtcataaccc acagcagtac tggaaccact
     3781 ggtgttcata aaagtatttg ctttcgcccc tttgcctata gcaacccagc cgtcgccagc
     3841 tgatccacta ccgtaatcaa caccctgacc gttgtcattc ccggcattcg ccaatgcccc
     3901 aaacgacgac aacattccac ccgcaaccag cgcagaaatt aacagcttac tgcgcccaga
     3961 tttcttgcca cggctttttg ccgtttcgct ggtaacagta taattccctg tcgcagggtt
     4021 ccagagaact ttaaatattt tgttcattaa tgatgctcgc tattccttgt tataagcgta
     4081 ctaactgcat ttattttttg cttcttttct gccgattttc agcagaggga agattgtcga
     4141 actgaatatt ttccatgttg atggctaact tcagatatcc caggttattg ggcgatacac
     4201 ccttcagggt caaattaatg tcttgccatt gacctggtaa taatttcaat gtggatttca
     4261 ttgatgtgtt gaaaagtaat tgttgccacc gggcaaactc tttggcatcg acaggttttt
     4321 caccacccca tgtcgcatta aaaccaatat ttgagatagg tgtacttaat aagttgacca
     4381 gtgaaatatg aataacactg ccattctctg tggcgtcaat ggataacact cgacccgcta
     4441 aagccaccga accattgttc aggatgaaat acttcgtttt tgctgggtta aactcggtaa
     4501 aaataaaagt gttttgttga tctttaacgg atttaattac gtgagttaaa gtctttgtac
     4561 tgcttattat gccagtttgt tgtttttgaa tagtttccag ttgactcttt agctatgctt
     4621 gttgtttttc aagtagatca attttattgt tatgttcttc ttgttgtttc aataaactac
     4681 tttctggctt gccttcttca atgtagtcac atcccgttaa tgcgcagaga actgaaacag
     4741 tgacagcact gaaaaaaatc ttcttcaagt tcatgtaaaa atccttattt cctccgacca
     4801 gcgatcaatg ccggtagagt tgtccattgt attattggtg atttatgttg ctttacatta
     4861 atgacagtga tgtgtgtcga ttaaatattg ttttaagcat tcatcataaa aatgtatcat
     4921 tcgtttcaaa agatgtctgt gtttgtatga atatattatt tttgtggatt ctaatgatga
     4981 ttattaataa atgtcaaata tgaaagaaac catgtctggg aaaaaattta cagataattt
     5041 attgtatgaa tatgatgatt aaaatatcac aattaaatcc gaaaaaaaga gacgtaactg
     5101 cttgttaatt aataaatgat atcttcggta atgactccaa cttactgat
//
LOCUS       DADMHM010000239         5114 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.244, whole genome shotgun sequence.
ACCESSION   DADMHM010000239 DADMHM010000000
VERSION     DADMHM010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5114)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5114)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5114
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.244"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..379
                     /locus_tag="JN125_003777"
     CDS             <1..379
                     /locus_tag="JN125_003777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873382.1"
                     /translation="KKTNIYFDDNFLNIYKRSQDRAPQIISDLKKHNIEIGEKLNDCR
                     KKLNISDAKLTYYWFVTDTGGVDYLDGVLTYNFQGKNRAENFHKQLLQYAYINYSKNQ
                     IPRDFVTSIKNSIYYKIEDCTKF"
     gene            complement(575..2125)
                     /locus_tag="JN125_003778"
     CDS             complement(575..2125)
                     /locus_tag="JN125_003778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001624483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="HAY8873383.1"
                     /translation="MASYHCTVKAGAKGSALKHADYISRSGEYKSYKSREDLEFSSSG
                     NMPSWAKKNPEELWKAADEFERKNGTAYREIEIALPRELTREQRIELVEDFVQKELGD
                     RHAYQYAIHNPPGAIDGKEQPHAHIMFCERINDGIERDPQQFFKRANSKSPERGGAKK
                     ASIPQTAGERKAALVALRSRWADVQNEHLARHGHESRVDHRSLKEQGINRTPEVHLGP
                     VQAASLNGEQIVAIQERRNAERELKTARDAANAIQQEQEQKQKIKAVEPVRSARSPEL
                     LLQYRKVMKMVIQGEARLARLGDANPNALKEHKLLQNAKAKKDSLSEWSRRIYEGARY
                     LDKLGRNVVSAQRELRELQEQRNALNGIRGLFRGADKREIDARILEQKSVLETAEHER
                     NEFRNKLQQAESEWDKENAAFKRTEGYKYVGELDRYREREILAAASLENTRQKVAEEV
                     SVARSQMLSLEPELSISGDEKAQMRHELLAEMAQERQQQEEKALRIQRSWSRGASRSN
                     ERDQDMER"
     gene            2297..2743
                     /locus_tag="JN125_003779"
     CDS             2297..2743
                     /locus_tag="JN125_003779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000184721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraD"
                     /protein_id="HAY8873384.1"
                     /translation="MTNREEWLSAKIAYINGLKSPSEQQRLLVLLAEKKNRTTTDEKT
                     LSALIRAEKTAEKAAAAKARVTAIIAAERKAAARAERKARDHELYKAAGLMIVAGLVD
                     SKTGKPKFSAAELVGALAGIAELPHNHPKWQEWEKRGKELLTKDSA"
     gene            complement(2937..3872)
                     /locus_tag="JN125_003780"
     CDS             complement(2937..3872)
                     /locus_tag="JN125_003780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009440807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid replication protein"
                     /protein_id="HAY8873385.1"
                     /translation="MSAALQYFEENLPHRPYHTDDLAFGLRISGKGRALLARYIQQNQ
                     PHAQFWLVFDVDRVGAAIDWSDRNAPAPNITVKNPENGHAHLLYALNLAVRTAPDASV
                     KALKYAAAIERALCEKLDADVNYSGLICKNPFHLEWQVMEWREEAYALDELADYLDLR
                     ASERRSVDKHYGLGRNCHLFEMTRKWAYRAIRQGWPAFSQWLDAVIQRVEMYNASLPV
                     PLSPPECRAIGKSIAKYTHRNFTPESFAQYVADTHTPEIQAKRGRKGGIAKGEAYDDK
                     RFMALCMLENGYSQKAIAAMLNVHRNTIRNWAMHK"
     gene            4384..>5114
                     /locus_tag="JN125_003781"
     CDS             4384..>5114
                     /locus_tag="JN125_003781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001360357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873386.1"
                     /translation="MGKMNINFKHILPLLSSFFISGCDPDGISKVKSFVYYDIDDSMT
                     VGKAFDTRSDCINGTWSEKEDNRGRTIVTYTCDISESGLKIINSAIMQEPEDKAEYSI
                     TQNNNSIKSTNESLEEYKQKTPLVEKTKEVIIDHIRKLNSAFNEDPMIYSKLTISPYL
                     DRMLYLKDHNDNALNEICGGYEYIQSADSYSWRDVSEEYAKESCEKHIYKVYQSFKKN
                     ASPLITKNFPGFYERVPPCENADEC"
BASE COUNT         1419 a         1241 c         1131 g         1323 t
ORIGIN      
        1 aaaaaaaaca aatatatact ttgatgataa ctttctaaat atctacaaaa gaagccaaga
       61 tagagcacct caaataattt ctgatttaaa aaaacacaat atagaaatag gtgaaaagtt
      121 aaatgattgc agaaaaaaac taaatatctc agatgccaaa ttaacctatt actggtttgt
      181 aacagacacc ggaggagttg attatttaga tggggtgttg acatataatt ttcagggaaa
      241 gaatagggct gaaaactttc ataaacaact attgcaatat gcatacatta actacagcaa
      301 aaatcaaata cctcgggact ttgtaacatc aataaaaaat agtatttatt ataaaataga
      361 agattgcact aagttttagt ccttccctta caggtggtta cacatataac cacctgcaaa
      421 tatttaacac ctgttaactt cattaatctg aactgtgagt aaatcaaaac gacaattttt
      481 ctcattcaga aaacggtgaa cgggacgcgg aattttttcg cgttccgtga aacgttggcg
      541 gggttcgggg cgcagtcccg atattgctac attttcaacg ctccatatct tgatcacgtt
      601 cgttactacg tgatgccccc ctggaccagg atcgctgtat acgcagtgct ttttcctcct
      661 gttgctgccg ttcctgcgcc atttctgcca gtaactcatg tcgcatttga gctttttcat
      721 ctccagatat actgagttca ggctccagag ataacatctg gctacgggca acggatacct
      781 cttcagcaac cttttgcctg gtgttctcta aagatgccgc cgccagaatc tcgcgttctc
      841 tgtacctgtc cagctcccca acgtacttat atccctcggt acgcttaaaa gcagcgtttt
      901 ctttgtccca ctcggattcg gcttgctgta gcttgttcct gaattcattc ctttcatgtt
      961 cagcggtttc cagcacactt ttttgctcca gaatacgcgc atcaatctcc cttttgtcag
     1021 ccccccgaaa caggccacga atcccattca aagcattgcg ttgttcctgt agctcccgca
     1081 gctccctttg tgcggaaaca acattacgcc ccagtttgtc taaataccgt gccccttcat
     1141 atattcgtct actccattcg gaaagagagt cttttttagc tttcgcattc tgaagcagct
     1201 tatgttcttt gagcgcattg ggattggcat cccctaaacg agcaagcctt gcctctccct
     1261 gaatgaccat tttcataacc ttgcggtact gaagcaataa ctccggtgaa cgggctgaac
     1321 gaacaggctc aactgccttg attttttgct tttgctcctg ttcctgctga atggcatttg
     1381 cggcatctct ggcggtcttg agttcccgct cggcattcct ccgttcctgg attgcaacaa
     1441 tctgctcccc attcagactg gcggcctgaa cggggccaag atgaacttcc ggcgtgcgat
     1501 tgataccctg ttctttcaga gaacgatgat ctacgcgcga ctcgtgaccg tgtcgcgcaa
     1561 ggtgctcatt ctgcacatct gcccagcggg aacgcagcgc aacaagggcg gcttttcgct
     1621 ctccggctgt ctggggaata ctcgcttttt ttgcgcctcc ccgctctggt gatttgctgt
     1681 tggcacgttt aaaaaattgc tgtggatcgc gttcaatacc atcattaatc cgctcgcaaa
     1741 acatgatatg cgcgtgtggc tgttcctttc cgtcgattgc acctggcgga ttgtggatcg
     1801 cgtactggta ggcatggcga tcgccaagtt ccttttgcac gaaatcttca acaagttcta
     1861 tccgttgttc gcgtgtcagt tcacgcggta acgcgatctc aatttcacgg tatgcagtcc
     1921 cgttttttcg ttcaaattca tctgcggctt tccatagctc ttcgggattt ttcttcgccc
     1981 atgatggcat gttaccggat gacgaaaatt ccagatcctc ccgcgatttg taactcttat
     2041 attcgccgga tctggaaatg taatcagcat gttttaaggc actgcctttt gctccagctt
     2101 tgacagtgca atggtagctt gccatctgcc ttttagccct ccgcaggagc gcacagtttc
     2161 tcgacgaagg agagaaacta ctaagtgcgc atccctgaat taatcaggga tgattttacg
     2221 gtctcacacg caggcagaca aggtgatatt atgcataata tcaactcaca ttaacggcaa
     2281 aagtgcagag gtaagaatga caaatcgtga agagtggtta agtgcaaaaa ttgcctacat
     2341 caacggactg aaatcaccat cagagcagca gagattactt gtgttactgg cagagaaaaa
     2401 aaaccgaaca acgacggatg aaaaaacgtt gtccgcactg atacgggcag aaaaaaccgc
     2461 agagaaagca gccgcagcaa aagccagagt aacggcaatc atagcggcag aacggaaggc
     2521 agccgcaagg gcggaacgaa aggcgcggga tcatgaactc tacaaggccg caggcctcat
     2581 gattgtggca ggactggtgg acagcaaaac cggaaagcca aagtttagtg ctgccgaact
     2641 ggtaggcgca ctcgcaggaa tcgcagagct accgcacaac catccaaaat ggcaggaatg
     2701 ggaaaaacgc gggaaagagc tactcaccaa agacagtgcg taagagcctc cgttcacgtt
     2761 ccggttccct ggtgcttcct cgctcattcg ctcgctacgc tcggtcatga gactgcggcg
     2821 agcacgatca cctcaatcat acggtaagcc gcaccattgc tgggctgaaa ggagaaaacc
     2881 gccggaaagc ccgctgctca aaaagacgcc gaaaaggcgc tgttatctga tataggctat
     2941 ttgtgcattg cccaattacg gatcgtatta cgatgtacat tcagcatcgc cgcaatagct
     3001 ttctgagaat atccattctc cagcatacat agcgccatga aacgcttgtc atcgtaggct
     3061 tcgcctttag cgatgccacc tttccggcct ctcttggcct gtatttctgg tgtgtgcgta
     3121 tcagccacat actgtgcgaa actttccggc gtgaagttcc tgtgcgtgta tttcgcaatg
     3181 ctcttgccaa tagcccgaca ttcaggcgga gaaagcggaa cgggaagcga tgcgttgtac
     3241 atttcgacac gctgaatcac agcatcaagc cactgtgaga atgctggcca gccctgacga
     3301 atcgccctgt aagcccattt gcgcgtcatt tcgaacagat ggcagtttcg ccccagcccg
     3361 taatgtttat cgacgctacg acgctctgag gctctcaaat cgagataatc agccagttca
     3421 tcgagggcgt aggcttcctc gcgccactcc atcacctgcc attccaggtg gaacggattt
     3481 ttgcaaatca gtccgctgta gttcacatct gcgtcaagtt tctcacacag cgcacgttca
     3541 attgcagcgg cgtatttcag cgccttaacc gacgcatcag gcgcggttct cacggcaaga
     3601 ttgagcgcgt agagcaggtg agcgtgcccg ttctcgggat tttttacggt gatgttcggc
     3661 gcgggggcgt tccggtcgct ccagtcaatc gcagctccta ctcggtcaac gtcaaaaacc
     3721 agccagaact gcgcatgagg ctgattttgc tggatgtagc gagcaagcag cgcacgccct
     3781 ttgccggaga tacgaagacc gaaagcgaga tcatccgtgt gatagggacg gtggggtaaa
     3841 ttttcttcga agtattgaag cgcggcgctc atgtgttacg attccttcca ggttatcgac
     3901 cgacatcgcc cctgtatttt cgtgaaagtc ttggcggata gacacgaatt tcaggggcgt
     3961 ttgtttttca gtcgcttaca ctacccccaa cgacaaaacc tgtcgagcct tcccgcaaaa
     4021 tcgatccatt taccataact cccgttgtgc gcccccctta aaacgccctc agtcgctttc
     4081 tggcgcaaaa aacgcaaaaa gacagggaaa caacaggcca gaccaaaaaa acgcgccaga
     4141 attgttttca gggggctgca taactatgca cgaaagcgat tcatgtccgg tttcactcgt
     4201 tttgaacagc gaacaggtca aaacagcaaa ctttctcatc cagaaaaagg tgaactggtg
     4261 cgaaatcttt tcgaactgcg taagacgttg agcacaaaca tagtaagtcg gtttatcggt
     4321 atgtatggat tccattaaca tatcgcctgt attaatattt cctcgttatt gttagaaata
     4381 aaaatgggaa aaatgaatat taactttaaa catatccttc ctttattgtc gtcatttttt
     4441 atttcaggat gcgaccctga tggaataagc aaggtaaagt ctttcgtata ttacgacatt
     4501 gacgactcaa tgactgttgg taaagccttc gatacaagga gtgattgcat caatggcaca
     4561 tggagtgaaa aagaggataa tcgaggcaga accatcgtca catatacctg tgatattagt
     4621 gaaagtggcc taaaaataat aaattcagcc attatgcaag aacctgaaga taaggctgaa
     4681 tattctataa cacaaaataa caacagcata aaatcaacca atgaatcact agaggaatac
     4741 aaacagaaaa cgcctctggt ggaaaaaaca aaagaggtca taatagatca tataagaaag
     4801 ctaaacagtg cttttaatga agatccaatg atatatagca aactcacaat tagcccttat
     4861 ttagacagaa tgctatatct aaaggaccat aatgacaatg cgctaaatga aatttgtggt
     4921 gggtacgaat acattcaatc tgccgatagt tacagttggc gtgatgtaag tgaagagtat
     4981 gcaaaagaat catgcgaaaa gcatatatat aaagtatatc aatcatttaa gaaaaatgca
     5041 tcaccattaa taactaaaaa cttccccggt ttctacgaac gtgtcccccc ctgtgagaac
     5101 gcagatgaat gcat
//
LOCUS       DADMHM010000240         5065 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.245, whole genome shotgun sequence.
ACCESSION   DADMHM010000240 DADMHM010000000
VERSION     DADMHM010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 5065)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5065)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5065
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.245"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            109..483
                     /locus_tag="JN125_003782"
     CDS             109..483
                     /locus_tag="JN125_003782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000651574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY8873387.1"
                     /translation="MKDIDTETRNNTVADNVTAVEDMAVERGVKLTRPIERGGEKITY
                     VEITGAIEQAGSLRGLSLSDVLNLKADTMFTLLPRVTSPRLDEVMIKKMSSRDFIQLC
                     AVAVNFMSEPDSGAKSVQETAA"
     gene            492..647
                     /locus_tag="JN125_003783"
     CDS             492..647
                     /locus_tag="JN125_003783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000333494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GpE family phage tail protein"
                     /protein_id="HAY8873388.1"
                     /translation="MCFEHIEDLVADIAAIFNWSPAEIFMMTPCEVVSWRERAALRSG
                     NADNEDS"
     gene            634..3441
                     /locus_tag="JN125_003784"
     CDS             634..3441
                     /locus_tag="JN125_003784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000853438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HAY8873389.1"
                     /translation="MKTLDIRVAFSAVDRLTRPAENARRLMGQFGDSIQRTQGAIKNL
                     ERQARSFERARDAVSKADAGIVKARRQLNALNQLQRTGTVLSEKQQKLMQQLSTRLER
                     LNESRTREIQKMRELGGELKRHGISLTGSDNTIQQAIRRTEQYNNQLERERQALARVT
                     RARERYSRAQETAGKLKTGGALAIGAAAAGGYAAGRFLQPAIGFGKEMFRVQALTRID
                     QNSPQFKALREQALKLGSETQFTAGDAASGQAFLAMAGFTPQAIQAALPGVLSMATAG
                     GMDLGETADIGSNILTQFGLSADQMDRVGDTLTAAFTRTNTDLRALGETMKYAGPVAG
                     KLGISLEQAAAMAGVLANMGIRGSDAGTAMRASLARLASPPKAAAEALKELGVSVSDA
                     GGKMRPMEDVLADLYKATRKYGEVDRVSFFKDIAGEEAFTSFMALVDAAGYGSLPKLR
                     KELEGARGEAERTAKVMANNLDGDLKSLSSAWEGLRIRIADLIDGPLRSVTQWLTRVV
                     SKVTALAQAHPALTRQLLIAGGALLAMTATVGSLSLAIGVLAGPLAKLRLGFSLLTGS
                     MNAVRVLPALWGMVTGSVSLLGGAIGALFSPVGLIVAALAGAAVLIWKYWDPIRAFFA
                     GVFSGIMERLTPLRETFERFGPVFDAIGSGISQVFNWFKSLLSPMESSKETLDKCTSA
                     GEIFGNVLGGALQLVLTPAKMLLDTLAWILEKLGVLPDEAERARKKIEDAQRAAILQD
                     KVALLQGDLAKINPPKPVENGNGTGGDNPKDNKPLTDSNTGTLRRLSKIADNTGKLVE
                     ETKKRIGPGDIVFKNLPRALAVRGEWQERKIAQVSKPAPAINITPVVPAPLPPALVPV
                     VAASSRPVAEAIRSPVASVPVTSRNREPVASGFGGEIHVHLHNVVTQNPRELAKLVGE
                     MVRAEMERRARAGRGCFYDKD"
     gene            3454..3942
                     /locus_tag="JN125_003785"
     CDS             3454..3942
                     /locus_tag="JN125_003785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001761054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY8873390.1"
                     /translation="MMMIYGMFVFELRTLPHQQLQQNKSWRHVKNERVNRSASWQYIG
                     AGDDRIVLSGVLYPEITGGEVSLSLLTTQAYTGLPWPLIDGVGQIYGMYVLTETNTTR
                     SEFDRYGKAKKIEFSLTLERCDEDLRERLQSSSFSDMLSGFKDKVTSSLNSAASSVKG
                     LF"
     gene            complement(3971..4570)
                     /locus_tag="JN125_003786"
     CDS             complement(3971..4570)
                     /locus_tag="JN125_003786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000905087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HAY8873391.1"
                     /translation="MLIGYVRVSTNDQNTDLQRNALVCAGCEQIFEDKLSGTKTDRPG
                     LKRALKRLQKGDTLVVWKLDRLGRSMKHLISLVGELRERGINFRSLTDSIDTSSPMGR
                     FFFHVMGALAEMERELIVERTLAGLAAARARGRTGGRRPKLTKEQHEQIARLIKNGHD
                     RKQLAIIYGIGTSTIYRYHPVGDIQTEETTGQTQENENR"
BASE COUNT         1171 a         1247 c         1453 g         1194 t
ORIGIN      
        1 acggcaagga cattgtgccc gatcgcatcc gttccgcgct tgggcttggc tgataagtaa
       61 tatgctggcg gcgcagtgcg tcgcctctga ctgaaaagga gacaacagat gaaagacatc
      121 gatactgaaa cccggaataa caccgtggcg gataatgtga cggcagttga ggatatggct
      181 gtcgaacgtg gcgtaaaact gacccgacca attgagcgtg gtggcgaaaa aatcacgtat
      241 gtggagatca ccggggctat tgagcaggct ggatccctgc gtggtctgtc gctgtctgat
      301 gtgctgaatc tgaaagcgga taccatgttc acgctgttgc ctcgcgtgac ctcgccacga
      361 ctggatgaag tgatgattaa aaaaatgtcg tcacgcgatt ttattcagtt gtgcgctgtg
      421 gctgtaaatt ttatgagtga gccagactct ggcgcgaaga gcgtgcagga gacggcagcg
      481 taatcaccct ggtgtgcttt gagcacatcg aagatctggt ggcggatatt gccgccattt
      541 ttaactggtc gcccgccgaa atcttcatga tgacgccctg cgaagtggtt agctggcgtg
      601 agcgagcggc acttcgtagc gggaatgcag acaatgaaga ctcttgatat ccgggtcgct
      661 ttcagcgccg ttgacaggct gacccggcct gccgaaaacg cccgccgcct gatggggcag
      721 tttggtgact ccatccagcg aacgcagggg gcgatcaaaa atctcgagcg tcaggcgcga
      781 tcatttgagc gcgcccgtga cgctgtcagt aaagcggatg cgggcatcgt gaaagcacga
      841 cgccagctta acgcccttaa tcagttacaa cgcacgggta cagtgctcag cgaaaaacaa
      901 caaaagctga tgcagcagtt aagcacccgg cttgaacgcc tgaatgaatc gcgcacacgg
      961 gaaattcaga aaatgcggga gcttggcgga gagctgaaac gccacggcat ttccctgaca
     1021 ggcagcgata acaccatcca gcaggccatc agacgcaccg aacagtacaa taaccagctt
     1081 gaacgcgaac ggcaggcgct tgcgcgtgta acacgggcgc gtgagcggta ttcgcgcgcg
     1141 caggaaacag cgggaaaact gaaaacaggt ggtgcgctgg caattggtgc ggcagcggcg
     1201 ggcggctatg ctgccgggcg ttttttgcag cctgcgatcg ggttcggcaa agagatgttc
     1261 cgcgttcagg cactgacgcg aatcgaccag aacagcccgc agtttaaggc gctgcgtgag
     1321 caggcgttaa aacttggctc tgaaacgcag ttcaccgcag gcgatgccgc cagtggacag
     1381 gcatttcttg caatggctgg ctttacacca caggccattc aggctgcgct ccctggcgta
     1441 ctgagcatgg caacggctgg cggtatggac ctcggtgaga cggcggatat tggctcaaat
     1501 attctgacgc agttcggtct ttctgctgac cagatggacc gggtcggcga cacactcacc
     1561 gcagcgttta cccgtaccaa cactgacctt cgcgcactgg gtgaaaccat gaaatatgca
     1621 ggtccggtgg cgggtaagct gggaatatct ctggagcagg ccgcagcgat ggcgggcgtg
     1681 ctggcgaata tgggtatcag ggggagtgat gctggtacgg caatgcgtgc cagcctggct
     1741 cgtctggcat caccgccaaa ggcggcagca gaggcgctga aagagcttgg cgtgtctgtc
     1801 tcggatgccg ggggcaaaat gcgcccgatg gaggatgtgc tggctgacct ttataaagct
     1861 acccgcaaat acggggaagt tgaccgggta tcgttcttta aggacattgc cggagaagag
     1921 gctttcacat catttatggc cctcgttgat gcggcaggtt acggctcctt acccaaactg
     1981 agaaaagaac ttgaaggcgc gcgcggtgag gctgaacgca cggcaaaggt tatggccaac
     2041 aaccttgacg gcgatctgaa atcactcagc agtgcatggg aagggttgcg catccgcatt
     2101 gcagatctga ttgacggtcc gctgcgttct gtcacgcagt ggctcacgcg tgtggtatca
     2161 aaggtgacgg cgctggcgca ggcccatccc gcactgacgc gccagctact gattgcaggc
     2221 ggtgcattgc tggcaatgac tgcaacggtt ggctcgttgt cgctggctat tggtgtgctt
     2281 gctggcccgc tggcaaaact gcgtcttggt ttttccctcc tgaccggatc aatgaatgct
     2341 gtcagggttc tgccagcact atggggaatg gtgacgggtt ccgtttcttt actgggaggc
     2401 gctatcgggg cgttgttcag tccggttggt cttatcgtgg ctgcgcttgc cggagctgcc
     2461 gttcttatct ggaaatactg ggatcccatc agggcatttt ttgccggggt gttcagcggg
     2521 attatggaaa ggctgacccc gttgcgcgaa acatttgaac ggtttggtcc tgtttttgac
     2581 gcaatcggga gtgggatcag ccaggtgttt aactggttta aatcgctgct gtcaccgatg
     2641 gagtccagca aggaaactct ggataaatgt accagtgctg gcgagatatt cggtaacgtt
     2701 cttggcggtg cgttacaact tgttctgaca cctgcaaaaa tgttgctgga tacgctggcg
     2761 tggatacttg aaaagcttgg tgtgcttccg gatgaagcgg aaagggcgcg caagaaaatc
     2821 gaagacgcac agcgtgcggc cattcttcag gacaaggttg ccttgcttca gggggacctg
     2881 gcgaaaatca atccgccgaa gcctgtggaa aatggcaatg gcaccggagg tgataacccc
     2941 aaagacaata aaccgctcac agacagcaat accggtacgc tgcgcagact cagcaaaatt
     3001 gctgataaca caggtaagct ggttgaggag acgaaaaaac gcattggccc cggcgatatt
     3061 gtctttaaaa acctgccccg agcacttgct gttcgtgggg agtggcagga gcggaagatt
     3121 gcgcaggtca gtaagcctgc ccccgcaatt aatatcacac ccgtggttcc ggctccgctg
     3181 cctccggcgc tggtccctgt tgttgcggcc agctcccgcc cggtggcgga ggctatacga
     3241 tctccagtgg catcagttcc tgtaacttcc cgtaaccggg agcctgttgc ctccggattt
     3301 ggtggtgaaa ttcatgttca tctgcataac gttgttacgc agaatccccg cgaactggcg
     3361 aaactggtcg gtgaaatggt cagggcagaa atggaacggc gcgcccgtgc cgggcgtggc
     3421 tgtttttacg ataaagattg aggagtcatg gccatgatga tgatctacgg catgtttgtt
     3481 tttgagctgc gcacgctgcc gcatcagcag ttacagcaaa acaaaagctg gcggcatgtg
     3541 aaaaatgaac gcgttaaccg ttcagcaagc tggcagtata tcggtgcagg tgatgatcgc
     3601 atcgttcttt ctggtgtgct ttatcctgaa attacaggtg gcgaagtgtc gctgtcgctg
     3661 ctgaccacgc aggcgtatac aggactaccc tggcctttga ttgatggcgt cgggcagatt
     3721 tacggcatgt atgtcctgac tgaaacgaat acgacccgct ccgagtttga tcgctacggt
     3781 aaggcgaaaa agatagaatt ttcactgact cttgaacgct gtgatgagga tttgcgggag
     3841 cgcctgcaat cctcatcgtt cagtgatatg ctgtccggct tcaaagataa ggtgacatca
     3901 tctcttaaca gcgcggccag ttcagttaaa gggctgttct gatttaacac aaaaaccgct
     3961 aatggtcaga ttagcggttt tcattttcct gagtctgccc ggttgtttct tcagtctgta
     4021 tatcgcctac agggtgataa cgataaatcg tcgatgtgcc aatgccgtaa attattgcca
     4081 gttgttttct gtcgtgcccg tttttgatta gccttgctat ttgctcatgc tgttcttttg
     4141 tcagcttcgg tcgacgtccg cctgtgcgcc cccttgcgcg cgctgccgcc agcccggcca
     4201 gtgtacgttc aacaattaat tcacgttcca tttcagccag ggcacccatc acgtggaaga
     4261 aaaaacgccc cattggagaa gatgtgtcta tgctgtcggt cagactgcga aaattaatcc
     4321 ctcgctcccg tagttccccg acgagagaaa tcagatgttt catgcttcgc ccgaggcgat
     4381 ccagtttcca gacaaccagc gtgtcacctt tttgaaggcg ctttaaagcg cgttttaatc
     4441 ccggtcggtc tgtctttgtc ccgcttaatt tatcttcaaa tatttgttca catcctgcac
     4501 aaacaagagc gtttcgttgc aggtctgtat tctggtcatt tgttgatacc cttacatagc
     4561 caatcagcac actgaatctc ccgtccaaaa gcgcaaatca tgccatgcag gccagaaacg
     4621 gccattattt aaaacctcgg tttacgagaa ctcggcacaa gcggggagaa aataccgtta
     4681 ctcagtacag cgaatacctg gaccaatcga caaacattca gcggtggcct ttctggggaa
     4741 ctgtccggca atgccgctac tgcaacaaag ctgaaaacag cacgaaaaat tgctggagtt
     4801 ggttttgatg gttctagcga tatttcaatt agtgccaaaa atgtcaatgc atttgcactc
     4861 cgacaaacag gtaatactgt taatggtgat acatccattg gatggaattg ggatagtagt
     4921 gcatataacg ccctgattgg tggtgcatct gcattaattc ttcactttaa tataaatgct
     4981 ggtagctgtc ctgccgtaca attccgtgtg aattataaaa atggtggcat ttcctacagg
     5041 tcggctcatg atggttatgg ggttg
//
LOCUS       DADMHM010000241         4919 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.246, whole genome shotgun sequence.
ACCESSION   DADMHM010000241 DADMHM010000000
VERSION     DADMHM010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4919)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4919)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4919
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.246"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            46..813
                     /gene="hdhA"
                     /locus_tag="JN125_003787"
     CDS             46..813
                     /gene="hdhA"
                     /locus_tag="JN125_003787"
                     /EC_number="1.1.1.159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-alpha-hydroxysteroid dehydrogenase"
                     /protein_id="HAY8873392.1"
                     /translation="MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN
                     ADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGKVDILVNNAGGGGPK
                     PFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYA
                     SSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKSVITPEIEQKMLQHTPIRRL
                     GQPQDIANAALFLCSPAASWVSGQILTVSGGGVQELN"
     gene            1042..1632
                     /locus_tag="JN125_003788"
     CDS             1042..1632
                     /locus_tag="JN125_003788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HAY8873393.1"
                     /translation="MMDNMQTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAIS
                     PGTLYHHFISKEALIQAIILQDQERALARFREPIEGIHFVDYMVESIVSLTHEAFGQR
                     ALVVEIMAEGMRNPQVAAMLKNKHMTITEFVAQRMRDAQQKGEISPDINTSMTSRLLL
                     DLTYGVLADIEAEDLAREASFAQGLRAMIGGILTAS"
     gene            2019..3830
                     /gene="uidA"
                     /locus_tag="JN125_003789"
     CDS             2019..3830
                     /gene="uidA"
                     /locus_tag="JN125_003789"
                     /EC_number="3.2.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-glucuronidase"
                     /protein_id="HAY8873394.1"
                     /translation="MLRPVETPTREIKKLDGLWAFSLDRENCGIDQRWWESALQESRA
                     IAVPGSFNDQFADADIRNYVGNVWYQREVFIPKGWAGQRIVLRFDAVTHYGKVWVNNQ
                     EVMEHQGGYTPFEADVTPYVIAGKSVRITVCVNNELNWQTIPPGMVITDENGKKKQSY
                     FHDFFNYAGIHRSVMVYTTPNTWVDDITVVTHVAQDCNHASVDWQVVANGDVSVELRD
                     ADQQVVATGQGTSGTLQVVNPHLWQPGEGYLYELCVTAKSQTECDIYPLRVGIRSVAV
                     KDEQFLINHKPFYFTGFGRHEDADLRGKGFDNVLMVHDHALMDWIGANSYRTSHYPYA
                     EEMLEWADEHGIVVIDETAAVGFNLSLGIGFEAGNKPKELYSEEAVNGETQQAHLQAI
                     KELIARDKNHPSVVMWSIANEPDTRPQGAREYFAPLAEATRKLDPTRPITCVNVMFCD
                     AHTDTISDLFDVLCLNRYYGWYVQSGDLETAEKVLEKELLAWQEKLHQPIIITEYGVD
                     TLAGLHSMYTDMWSEEYQCAWLDMYHRVFDRVSAVVGEQVWNFADFATSQGILRVGGN
                     KKGIFTRDRKPKSAAFLLQKRWTGMNFGEKPQQGGKQ"
     gene            3827..>4919
                     /gene="uidB"
                     /locus_tag="JN125_003790"
     CDS             3827..>4919
                     /gene="uidB"
                     /locus_tag="JN125_003790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001075873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucuronide transporter"
                     /protein_id="HAY8873395.1"
                     /translation="MNQQLSWRTIVGYSLGDVANNFAFAMGALFLLSYYTDVAGVGAA
                     AAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTD
                     WSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFV
                     CLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVRIVAQPSLK
                     ISLQTLKRNRPLFMLCIGALCVLISTFAVSASSLFYERYVLNDTGLFTVLVLVQNLVG
                     TVASAPLVPGMVARSGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASIGQG
                     VTMTVMWALEADTVEYGEYLTGVRIEGLTY"
BASE COUNT         1197 a         1155 c         1315 g         1252 t
ORIGIN      
        1 acaggcggtg ccttttattt ttactgaagt tcacaggagg tttatgtgtt taattctgac
       61 aacctgagac tcgacggaaa atgcgccatc atcacaggtg cgggtgcagg tattggtaaa
      121 gaaatcgcca ttacattcgc gacagctggc gcatctgtgg tggtcagtga tattaacgcc
      181 gacgcagcta accatgttgt agacgaaatt caacaactgg gggggcaggc atttgcctgc
      241 cgttgtgata ttacttccga acaggaactc tctgcactgg cagactttgc tatcagtaag
      301 ctgggtaaag ttgatattct ggttaacaac gccggtggcg gtggacctaa accgtttgat
      361 atgccaatgg cggattttcg ccgtgcttat gaactgaatg tgttttcttt tttccatctg
      421 tcacaacttg ttgcgccaga aatggaaaaa aatggcggtg gcgttattct gaccatcact
      481 tctatggcgg cagaaaataa aaatataaac atgacttcct atgcatcatc taaagctgcg
      541 gccagtcatc tggtcagaaa tatggcattt gacctgggtg aaaaaaatat tcgggtgaat
      601 ggcattgcgc cgggggcaat attaaccgat gccctgaaat ccgttattac accagaaatt
      661 gaacaaaaaa tgttacagca cacgccgatc agacgtctgg gtcaaccgca agatattgct
      721 aacgcggcgc tgttcctttg ctcgcctgca gccagctggg taagcggaca aattctcacc
      781 gtctccggtg gtggggtaca ggagctcaat taatacacta acgaaccggt aaacagccgt
      841 atgtgttgtt taccgggata gcgtgtgcaa ttcatcaacg tctctgctaa acaactggca
      901 gccaaatcac ggctattggt taaccaatag ctggatgaaa agcatacgaa tagagtgtgc
      961 cttagcacta ttcaacagca atgataggcg ctcacctgac aacgcggtaa actagttatt
     1021 cacgctaact ataatggttt aatgatggat aacatgcaga ctgaagcaca accgacacgg
     1081 acccggatcc tcaatgctgc cagagagatt ttttcagaaa atggatttca cagtgcctcg
     1141 atgaaagcca tctgtaaatc ctgcgccatt agtcccggga cgctttatca ccatttcatc
     1201 tccaaagaag ccttgattca ggcgattatc ttacaggacc aggagagggc gctggcccgt
     1261 ttccgggaac cgattgaagg gattcatttt gttgactata tggtcgagtc tattgtctct
     1321 ctcacccatg aagcctttgg gcaacgggcg ctggtggtcg aaattatggc ggaagggatg
     1381 cgtaacccac aggtcgccgc catgcttaaa aataagcata tgacgatcac tgaatttgtt
     1441 gcccagcgga tgcgtgatgc ccagcaaaaa ggcgagataa gcccagacat caacacgtca
     1501 atgacttcac gtttactgct ggatctgacc tacggtgtac tggccgatat cgaagcggaa
     1561 gatctggcgc gtgaagcgtc gtttgctcag ggattacgcg cgatgattgg cggtatctta
     1621 accgcatcct gatcctctca tttcgcgggc tggtgataac tgtgcccgcg tttcatactt
     1681 taatttccct gtacaaaata caatctagcc gggatcggag aattccccca aaaatattca
     1741 ccgtagccat atgtcatgag agtttatcgt tctcaagatg cccgaacgaa cgtttgattg
     1801 cttattttat ggcttctgtc aacgctgttt taaagattaa tgcgatctat atcacgctgt
     1861 gcgtattgca gattttggtt ttttgatcgc ggtgtcagtt ctttttattt ccatttctct
     1921 tccatgggtt tctcacagat aactgtgtgc aacacagaat tggttaacta atcagattag
     1981 aggttgacca gtatttttat ttgaatgagg agtcccttat gttacgtcct gtagaaaccc
     2041 caacccgtga aatcaaaaaa ctcgacggcc tgtgggcatt cagtctggat cgcgaaaact
     2101 gtggaattga tcagcgttgg tgggaaagcg cgttacaaga aagccgggca attgctgtgc
     2161 caggcagttt taacgatcag ttcgccgatg cagatattcg taattatgtg ggcaacgtct
     2221 ggtatcagcg cgaagtcttt ataccgaaag gttgggcagg ccagcgtatc gtgctgcgtt
     2281 tcgatgcggt cactcattac ggcaaagtgt gggtcaataa tcaggaagtg atggagcatc
     2341 agggcggcta tacgccattt gaagccgatg ttacgccgta tgttattgcc gggaaaagtg
     2401 tacgtatcac cgtttgtgtg aacaacgaac tgaactggca gactatcccg ccgggaatgg
     2461 tgattaccga tgaaaacggc aagaaaaagc agtcttactt ccatgatttc tttaactatg
     2521 ccgggatcca tcgcagcgta atggtctaca ccacgccgaa cacctgggtg gacgatatca
     2581 ccgtggtgac gcatgttgcg caagactgta accacgcgtc tgttgactgg caggtggtag
     2641 caaatggtga tgtcagcgtt gaactgcgtg atgcggatca gcaggtggtt gcaactggac
     2701 aaggtaccag cgggactttg caagtggtga atccccacct ctggcaaccg ggtgaaggtt
     2761 atctctatga actgtgcgtc acagccaaaa gccagacaga gtgtgatatc tacccgctgc
     2821 gcgtcggcat ccggtcagtg gcagtgaagg acgaacagtt cctgattaac cacaaaccgt
     2881 tctactttac tggctttggt cgtcatgaag atgcggattt gcgaggcaaa ggattcgata
     2941 acgtgctgat ggtgcacgat cacgcattaa tggactggat tggggccaac tcctaccgaa
     3001 cctcgcatta cccttacgct gaagagatgc tcgagtgggc agatgaacat ggcatcgtgg
     3061 tgattgatga aactgcagct gtcggcttta acctctcttt aggcattggt ttcgaagcgg
     3121 gcaacaagcc gaaagaactg tacagcgaag aggctgtcaa cggggaaact cagcaggcgc
     3181 acttacaggc gattaaagag ctgatagcgc gtgacaaaaa ccacccaagc gtggtgatgt
     3241 ggagtattgc caacgaaccg gatacccgtc cgcaaggtgc acgagaatat ttcgcgccac
     3301 tggcggaagc aacgcgtaaa ctcgacccga cgcgtccgat cacctgcgtc aatgtaatgt
     3361 tctgcgacgc tcacaccgat accatcagcg atctctttga tgtgctgtgc ctgaaccgtt
     3421 attacggatg gtatgtccaa agcggcgatt tggaaacggc agagaaggta ctggaaaaag
     3481 aacttctggc ctggcaggag aaactgcatc agccgattat catcaccgaa tacggcgtgg
     3541 atacgttagc cgggctgcac tcaatgtaca ccgacatgtg gagtgaagag tatcagtgtg
     3601 catggctgga tatgtatcac cgcgtctttg atcgcgtcag cgccgtcgtc ggtgaacagg
     3661 tatggaattt cgccgatttt gcgacctcgc aaggcatatt gcgcgttggc ggtaacaaga
     3721 aggggatctt cacccgcgac cgcaaaccga agtcggcggc ttttctgctg caaaaacgct
     3781 ggactggcat gaacttcggt gaaaaaccgc agcagggagg caaacaatga atcaacaact
     3841 ctcctggcgc accatcgtcg gctacagcct cggtgacgtc gccaataact tcgccttcgc
     3901 aatgggggcg ctcttcctgt tgagttacta cactgacgtc gctggcgtcg gtgccgctgc
     3961 ggcgggcacc atgctgttac tggtgcgggt attcgatgcc ttcgccgacg tctttgccgg
     4021 acgagtagtg gacagtgtga atacccgctg gggaaaattc cgcccgtttt tactcttcgg
     4081 tactgcgccg ttaatgatct tcagcgtgct ggtattctgg gtaccgaccg actggagcca
     4141 tagcagcaaa gtagtgtatg catatttgac ctacatgggc ctcgggcttt gctatagcct
     4201 ggtgaatatt ccttatggtt cacttgctac cgcgatgacc caacaaccac aatcccgcgc
     4261 ccgtctgggc gcggctcgtg ggattgccgc ttcattgacc tttgtctgcc tggcatttct
     4321 gatagggccg agcattaaga actccagccc ggaagagatg gtgtcggtat accatttctg
     4381 gacgattgtg ctggcgattg ccggaatggt gctttacttc atctgcttca aatcgacgcg
     4441 tgagaatgtg gtacgtatcg ttgcgcagcc gtcattgaag atcagtctgc aaaccctgaa
     4501 acggaatcgc ccgctgttta tgttgtgcat cggtgcgctg tgtgtgctga tttcgacctt
     4561 tgcggtcagc gcctcgtcgt tgttctacga gcgctatgtg ttaaatgata ccgggctgtt
     4621 cactgtgctg gtactggtgc aaaacttggt tggtactgtg gcatcggcac cgctggtgcc
     4681 ggggatggtc gcgaggagcg gtaaaaagaa taccttcctg attggcgctt tgctgggaac
     4741 ctgcggttat ctgctattct tctgggtttc cgtctggtca ctgccggtgg cgttggttgc
     4801 gttggccatc gcttcaattg gtcagggcgt tactatgact gtgatgtggg cactggaagc
     4861 tgataccgta gaatacggtg aatacctgac cggcgtgcga attgaagggc tcacctatt
//
LOCUS       DADMHM010000242         4881 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.247, whole genome shotgun sequence.
ACCESSION   DADMHM010000242 DADMHM010000000
VERSION     DADMHM010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4881)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4881)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4881
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.247"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..800
                     /locus_tag="JN125_003791"
     CDS             <1..800
                     /locus_tag="JN125_003791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001079584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="adhesin"
                     /protein_id="HAY8873396.1"
                     /translation="SITNLNNQVTNLDTRVTNIENGIGDIVTTGSTKYFKTNTDGVDA
                     NAQGKDSVAIGSGSIAAADNSVALGTGSVAEEENTISVGSSTNQRRITNVAAGVNATD
                     AVNVSQLKSSEAGGVRYDTKADGSIDYSNITLGGGNGSTTRISNVSAGVNNNDAVNYA
                     QLKQSVQETKQYTDQRMVEMDNKLSKTESKLSGGIASAMAMTGLPQAYTPGASMASIG
                     GGTYNGESAVALGVSMVSANGRWVYKLQGSTNSQGEYSAALGAGIQW"
     gene            1168..2823
                     /gene="lldP"
                     /locus_tag="JN125_003792"
     CDS             1168..2823
                     /gene="lldP"
                     /locus_tag="JN125_003792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HAY8873397.1"
                     /translation="MNLWQQNYDPAGNIWLSSLIASLPILFFFFALIKLKLKGYVAAS
                     WTVAIALAVALLFYKMPVANALASVVYGFFYGLWPIAWIIIAAVFVYKISVKTGQFDI
                     IRSSILSITPDQRLQMLIVGFCFGAFLEGAAGFGAPVAITAALLVGLGFKPLYAAGLC
                     LIVNTAPVAFGAMGIPILVAGQVTGIDSFEIGQMVGRQLPFMTIIVLFWIMAIMDGWR
                     GIKETWPAVVVAGGSFAIAQYLSSNFIGPELPDIISSLVSLLCLTLFLKRWQPVRVFR
                     FGDLGASQVDMTLAHTGYTAGQVLRAWTPFLFLTATVTLWSIPPFKALFASGGALYEW
                     VINIPVPYLDKLVARMPPVVSEATAYAAVFKFDWFSATGTAILFAALLSIVWLKMKPS
                     DAISTFGSTLKELALPIYSIGMVLAFAFISNYSGLSSTLALALAHTGHAFTFFSPFLG
                     WLGVFLTGSDTSSNALFAALQATAAQQIGVSDLLLVAANTTGGVTGKMISPQSIAIAC
                     AAVGLVGKESDLFRFTVKHSLIFTCMVGVITTLQAYVLTWMIP"
     gene            2823..3599
                     /gene="lldR"
                     /locus_tag="JN125_003793"
     CDS             2823..3599
                     /gene="lldR"
                     /locus_tag="JN125_003793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator LldR"
                     /protein_id="HAY8873398.1"
                     /translation="MIVLPRRLSDEVADRVRALIDEKNLEAGMKLPAERQLAMQLGVS
                     RNSLREALAKLVSEGVLLSRRGGGTFIRWRHDTWPEQNIVQPLKTLMADDPDYSFDIL
                     EARYAIEASTAWHAAMRATPGDKEKIQLCFEATLSEDPDIASQADVRFHLAIAEASHN
                     IVLLQTMRGFFDVLQSSVKHSRQRMYLVPPVFSQLTEQHQAVIDAIFAGDADGARKAM
                     MAHLSFVHTTMKRFDEDQARHARITRLPGEHNEHSREKNA"
     gene            3596..4786
                     /gene="lldD"
                     /locus_tag="JN125_003794"
     CDS             3596..4786
                     /gene="lldD"
                     /locus_tag="JN125_003794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent L-lactate dehydrogenase"
                     /protein_id="HAY8873399.1"
                     /translation="MIISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSE
                     VALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIP
                     FTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPT
                     PGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLE
                     DYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHG
                     GRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLY
                     ALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLVQGLGKELPAALAPMAK
                     GNAA"
BASE COUNT         1071 a         1302 c         1318 g         1190 t
ORIGIN      
        1 agagcattac taacctgaac aatcaggtca ctaatctgga tactcgcgtt actaatatcg
       61 aaaacggtat tggcgacatt gtcaccaccg gtagcaccaa gtacttcaag accaacaccg
      121 atggcgtaga tgccaacgcc cagggtaaag atagcgttgc tattggttct ggttccattg
      181 ctgccgctga caacagcgtc gcactgggta ccggttccgt tgcagaggaa gaaaatacaa
      241 tctctgtagg ttcttctact aaccaacgcc gtatcaccaa cgtagctgcc ggtgttaatg
      301 ccaccgatgc ggttaacgtg tcgcagctga aatcttctga agcaggcggc gtgcgctacg
      361 acaccaaagc tgatggttct atcgactata gcaatatcac cctcggtggt ggcaacggca
      421 gtacgactcg tatcagcaac gtctccgctg gcgtcaacaa caacgacgcg gtgaactacg
      481 cgcagttgaa gcaaagcgtg caggaaacga agcaatacac cgatcagcgg atggttgaga
      541 tggataacaa actgtctaaa actgaaagca agttgagcgg tggtatcgct tctgcaatgg
      601 caatgaccgg tctgccgcag gcttatacac cgggtgccag catggcttct attggtggcg
      661 gtacttacaa cggtgaatcg gcagttgctt taggtgtatc gatggtgagc gccaatggtc
      721 gttgggtcta caaattacaa ggtagtacca atagccaggg tgaatactcc gccgcactcg
      781 gtgccggtat tcagtggtaa tgatccatta agttagtgtg actaagggca aacgccaaat
      841 tgcctgatgc gttacgcgca tcaggcaaga taaggcgctc cgggtcaaca atctaagggc
      901 aattctctga tgaggattgc ccttttcttt accagacatc tccccccaca agaattggcc
      961 ctaccaattc ttcgcttatc tgacctctgg ttcacaattc cccaattaaa actcacatca
     1021 atattgccaa tacataacat ttagttaacc attcattgtc attatcccta cacaacacaa
     1081 ttggcagtgc cacttttaca caacgtgtga caaggagatg agcaacagac tcattacacg
     1141 atgtgcgtgg actccaggag acctgcaatg aatctctggc aacaaaacta cgatcccgcc
     1201 gggaatatct ggctttccag tctgatagca tcgcttccca tcctgttttt cttctttgcg
     1261 ctgattaagc tcaaactgaa aggatacgtc gccgcctcat ggacggtagc aatcgccctt
     1321 gccgtggctt tgctgttcta taaaatgccg gtcgctaacg cgctggcctc ggtggtttat
     1381 ggcttcttct atggtttgtg gcccatcgcg tggatcatta ttgcagcagt gttcgtctat
     1441 aagatctcgg tgaaaaccgg gcagtttgac atcattcgct cgtctattct ttcgataacc
     1501 cctgaccagc gtctgcaaat gctgatcgtc ggtttctgtt tcggcgcttt ccttgaagga
     1561 gccgcaggct ttggcgcacc ggtagcaatt accgccgcat tgctggtcgg cctgggtttt
     1621 aaaccgctgt acgccgccgg actgtgcctg attgttaaca ccgcgccagt ggcatttggc
     1681 gcgatgggca ttccaatcct agttgccgga caagtaacag gcatcgacag ttttgagatt
     1741 ggccagatgg tggggcgtca gctaccgttt atgaccatta tcgtgctgtt ctggatcatg
     1801 gcgattatgg acggctggcg cggtatcaaa gagacgtggc ctgcggtcgt ggttgcgggc
     1861 ggctcgtttg ccatcgctca gtaccttagc tccaacttca ttgggccgga gctgccggac
     1921 attatctctt cgctggtatc actgctctgc ctgacgctgt tcctcaaacg ctggcaacca
     1981 gttcgcgtat tccgcttcgg tgacttgggg gcgtcacagg ttgatatgac gctggcccac
     2041 accggttaca ccgcgggtca ggtgttacgt gcctggacac cgttcctgtt cctgaccgct
     2101 accgtaacac tgtggagcat cccgccgttt aaagccctgt tcgcatcggg tggtgcgctg
     2161 tatgagtggg tgatcaacat tccggtgccg tacctcgata aactggttgc ccgtatgcca
     2221 ccagtggtca gcgaggctac agcctatgcc gccgtgttta agtttgactg gttctctgcc
     2281 accggcaccg ccattctgtt tgctgcactg ctctcgattg tctggctgaa gatgaaaccg
     2341 tctgacgcta tcagcacctt cggcagcacg ctgaaagaac tggctctacc catctactcc
     2401 atcggcatgg tgctggcgtt cgcctttatc tcgaactatt ccggactgtc atcaacactg
     2461 gcactggcac tggcgcacac cggtcatgca ttcaccttct tctcgccgtt cctcggctgg
     2521 ctgggggtat tcctgaccgg gtcggatacc tcatctaacg ccctgttcgc cgcgctgcaa
     2581 gccaccgcag cacaacaaat tggcgtctct gatctgttgc tggttgccgc caataccacc
     2641 ggtggcgtca ccggtaagat gatctccccg caatctatcg ctatcgcctg tgcggcggta
     2701 ggcctggtgg gcaaagagtc tgatttgttc cgctttactg tcaaacacag cctgatcttc
     2761 acctgtatgg tgggcgtgat caccacgctt caggcttatg tcttaacgtg gatgattcct
     2821 taatgattgt tttacccaga cgcctgtcag acgaggttgc cgatcgtgtg cgggcgctga
     2881 ttgatgaaaa aaacctggaa gcgggcatga agttgcccgc tgagcgccaa ctggcgatgc
     2941 aactcggcgt atcacgtaat tcactacgcg aggcgctggc aaaactagtg agcgaaggcg
     3001 tgctgctcag tcgacgcggc ggcgggacgt ttattcgctg gcgtcatgac acatggccgg
     3061 agcaaaacat cgtccagccg ctaaaaacgc tgatggccga tgatccggat tacagtttcg
     3121 atattctgga agcccgctac gccattgaag ccagcaccgc atggcatgcg gcaatgcgcg
     3181 ccacacctgg cgacaaagaa aagattcagc tttgctttga agcaacgcta agtgaagacc
     3241 cggatatcgc ctcacaagcg gacgttcgtt ttcatctggc gattgccgaa gcctcacata
     3301 acatcgtgct gctgcaaacc atgcgcggtt tcttcgatgt cctgcaatcc tcagtgaagc
     3361 atagccgtca gcggatgtat ctggtgccac cggttttttc acaactgacc gaacaacatc
     3421 aggctgtcat tgacgccatt tttgctggtg atgccgacgg ggcgcgtaaa gcaatgatgg
     3481 cgcaccttag ttttgttcac accaccatga aacgattcga tgaagatcag gctcgccacg
     3541 cacggattac ccgcctgccc ggtgagcata atgagcattc gagggagaaa aacgcatgat
     3601 tatttccgca gccagcgatt atcgcgccgc agcgcaacgc attctgccgc cgttcctgtt
     3661 ccactatatg gatggtggtg catattctga atacacgctg cgccgcaacg tggaagattt
     3721 gtcagaagtg gcactgcgcc agcgtattct gaaaaacatg tccgacttaa gcctggaaac
     3781 gacgctgttt aatgagaaat tgtcgatgcc ggtagcactg gcaccggtgg gtttgtgtgg
     3841 catgtatgcg cgtcgtggcg aagttcaggc agccaaagcg gcggacgcgc atggcattcc
     3901 gtttactctc tcgacggttt ccgtttgccc gattgaagaa gtcgcgccag ccatcaagcg
     3961 cccaatgtgg ttccagcttt atgtactgcg cgatcgcggc tttatgcgta acgcgctgga
     4021 gcgagcaaaa gcagcgggtt gttcgacgct ggttttcacc gtggatatgc cgacaccggg
     4081 cgcacgctac cgtgatgcgc attcaggtat gagcggccca aatgcggcaa tgcgccgcta
     4141 cttgcaggcg gtgacgcatc cgcaatgggc gtgggatgtg ggcctgaacg gtcgtccaca
     4201 tgatttaggt aatatctcag cttatctcgg caaaccaacc ggactggaag attacatcgg
     4261 ctggctgggg aataacttcg atccgtccat ctcatggaaa gaccttgagt ggatccgcga
     4321 tttctgggat ggcccgatgg tgatcaaagg gatcctcgat ccggaagatg cgcgcgatgc
     4381 agtacgtttt ggtgctgatg gaattgtggt ttctaaccac ggtggccgcc agctggacgg
     4441 tgtactctct tccgctcgtg cgttgcccgc tattgcagat gcggtgaaag gtgatatcgc
     4501 cattctggcg gatagcggaa ttcgtaacgg gcttgatgtc gtgcgtatga ttgcgctcgg
     4561 tgccgacacc gtactgctgg gtcgtgcttt cctgtatgcg ctggcaacag cgggccaggc
     4621 gggtgtagct aacctgctaa atctgatcga aaaagagatg aaagtggcga tgacgctgac
     4681 tggcgcgaaa tcgatcagtg aaattacgca agattcgctg gtgcaagggc tgggtaaaga
     4741 gttgcctgcg gcactggctc ccatggcgaa agggaatgcg gcatagtcgt ttgcgccccc
     4801 gttactttat tcgtacccct tataatgggg tgttagccag ccagacccgg catgattact
     4861 gcccccagtc gtccatgatc c
//
LOCUS       DADMHM010000243         4881 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.248, whole genome shotgun sequence.
ACCESSION   DADMHM010000243 DADMHM010000000
VERSION     DADMHM010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4881)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4881)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4881
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.248"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            64..1863
                     /gene="cysJ"
                     /locus_tag="JN125_003795"
     CDS             64..1863
                     /gene="cysJ"
                     /locus_tag="JN125_003795"
                     /EC_number="1.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent assimilatory sulfite reductase
                     flavoprotein subunit"
                     /protein_id="HAY8873400.1"
                     /translation="MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVL
                     NQQPAALAATPAPAAEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYK
                     FKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEF
                     FCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSV
                     ATGAVNEIHASPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDAL
                     GVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYAT
                     LTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIAT
                     SQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPAN
                     PETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKD
                     GVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQAL
                     LEVIAEFGGMDTEAADEFLSELRVERRYQRDVY"
     gene            1863..3575
                     /gene="cysI"
                     /locus_tag="JN125_003796"
     CDS             1863..3575
                     /gene="cysI"
                     /locus_tag="JN125_003796"
                     /EC_number="1.8.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001290736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="assimilatory sulfite reductase (NADPH)
                     hemoprotein subunit"
                     /protein_id="HAY8873401.1"
                     /translation="MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGF
                     KGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKF
                     AGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSN
                     PYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKT
                     TVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGY
                     LPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPI
                     RPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRI
                     TANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERF
                     LPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGN
                     RIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPAR
                     DLWD"
     gene            3650..4384
                     /gene="cysH"
                     /locus_tag="JN125_003797"
     CDS             3650..4384
                     /gene="cysH"
                     /locus_tag="JN125_003797"
                     /EC_number="1.8.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenosine phosphosulfate reductase"
                     /protein_id="HAY8873402.1"
                     /translation="MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNL
                     PGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLK
                     VYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQ
                     SGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTT
                     RKWEPGMSEEETRFFGLKRECGLHEG"
     gene            4649..4801
                     /locus_tag="JN125_003798"
     CDS             4649..4801
                     /locus_tag="JN125_003798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Hok family toxin"
                     /protein_id="HAY8873403.1"
                     /translation="MLTKYALVAIIVLCFTVLGFTLMVGDSLCELSIRERGMEFKAVL
                     AYESKK"
BASE COUNT         1199 a         1260 c         1390 g         1032 t
ORIGIN      
        1 cttctgtttt atgggcgctg acagggcgca gaaacagctt tgcttactgg aacataacga
       61 cgcatgacga cacaggtccc accttccgcg ttgcttccgt tgaacccgga gcaactggca
      121 cgccttcagg cggccacgac cgatttaacg cctacccagc ttgcctgggt ttctggctat
      181 ttctggggcg tactcaatca gcagcctgct gcgcttgcag cgacgccagc gccagccgca
      241 gaaatgccgg gtataactat tatctccgcc tcgcaaaccg gcaatgcgcg ccgggttgct
      301 gaagcattac gcgatgattt attagcagca aaactgaacg ttaagctggt gaacgcgggc
      361 gactataaat tcaaacaaat cgccagcgaa aaactgctca tcgtagtgac gtcaacgcaa
      421 ggggaagggg aaccgccgga agaagccgtc gcgctgcata agttcctgtt ctccaaaaaa
      481 gcgccaaagc tggaaaacac cgcgtttgcc gtgtttagcc tcggcgatag ctcttatgaa
      541 tttttctgcc agtccgggaa agatttcgac agcaagctgg cggaactggg tggtgaacgc
      601 ctgctcgacc gtgtcgatgc cgatgttgaa taccaggctg ctgccagcga gtggcgcgcc
      661 cgcgtggttg atgcgcttaa atcgcgtgcg cctgtcgcgg caccttcgca atccgtcgct
      721 actggcgcgg taaatgaaat ccacgccagc ccgtacagca aagacgcgcc gctggtggct
      781 agcctctctg ttaaccagaa aattaccggg cgtaactctg aaaaagacgt tcgccatatc
      841 gaaattgact taggtgactc gggcctgcgt taccagccgg gtgacgcgct gggcgtctgg
      901 tatcagaacg atccggcact ggtgaaagaa cttgtcgaac tgctgtggct gaaaggcgat
      961 gaacctgtca ccgtcgaggg caaaacgttg cctctgaacg aagcgctaca gtggcacttc
     1021 gaactgaccg tcaacaccgc caacattgtt gagaattacg ccacgcttac ccgcagcgaa
     1081 acactgctgc cgctggtggg cgataaagcg aagttacagc attacgccgc gacgacgccg
     1141 attgtcgaca tggtgcgttt ctctccggcg caactggatg ccgaagcgct gattaatctg
     1201 ctgcgcccgc tgaccccgcg cctgtattcc atcgccacct cgcaggcgga agtcgagaac
     1261 gaagtacacg tcaccgttgg tgtggtgcgt tacgacgtgg aaggccgagc ccgtgccggt
     1321 ggtgcctcca gcttcctcgc ggatcgcgtg gaagaagagg gcgaagtccg cgtatttatc
     1381 gaacataacg ataactttcg cctgcccgct aacccggaaa ccccggtgat tatgattggc
     1441 ccaggcaccg gtattgcgcc gttccgcgcc tttatgcagc aacgcgccgc cgacgaagcg
     1501 ccaggtaaaa actggctgtt ctttggtaat ccgcacttta cggaagactt cctgtaccag
     1561 gtggagtggc agcgctacgt caaagatggc gtgctgacac gtatcgatct tgcctggtcg
     1621 cgcgaccaaa aagaaaaagt ttacgtacaa gacaaactgc gcgaacaggg cgcggagctg
     1681 tggcgctgga tcaatgatgg tgcccacatt tatgtctgcg gcgacgctaa tcgcatggcg
     1741 aaagacgttg agcaggcact tctggaagtg attgccgaat ttggtggcat ggacaccgaa
     1801 gcggcggatg aatttttaag tgagctgcgc gtagagcgcc gttatcagcg agatgtctac
     1861 taatgagcga aaaacatcca gggcctttag tggtcgaagg aaaactgaca gacgccgagc
     1921 gcatgaagct tgaaagcaac tacctgcgcg gcaccattgc ggaagattta aacgacggtc
     1981 tgaccggcgg ctttaagggc gacaacttcc tgctgatccg cttccacggc atgtatcagc
     2041 aggatgaccg cgacatccgc gccgaacgtg ctgaacagaa gctggagccg cgccacgcga
     2101 tgctgcttcg ctgtcgtctg ccgggtgggg tgattaccac taaacagtgg caggcgatcg
     2161 acaaatttgc cggtgaaaac accatctatg gcagcattcg cctgaccaac cgccagacat
     2221 tccagttcca cggcattctg aaaaagaacg tcaaaccggt gcaccagatg ctgcactcgg
     2281 tcggtcttga tgcgctggcg acagctaacg acatgaaccg taacgtactc tgcacctcga
     2341 acccttacga gtcgcagctg cacgcggaag cgtacgagtg ggcgaagaag atttctgagc
     2401 atctgttgcc tcgtacccgc gcgtatgcgg agatctggct cgaccaggaa aaagtcgcca
     2461 ctactgatga agaaccgatc cttggtcaga cctacctgcc gcgtaagttc aaaaccacgg
     2521 tagtgatccc gccgcagaac gatatcgatc tgcatgccaa cgacatgaac ttcgtggcaa
     2581 tcgccgaaaa cggcaagctg gtaggcttca acctgctggt gggcggtggg ctttctatcg
     2641 aacacggcaa caagaaaacc tacgcccgca cggcgagcga gtttggctat ctgccgctgg
     2701 agcatacgct ggcggtggcc gaagccgtcg tgacaactca gcgtgactgg ggtaaccgaa
     2761 ccgatcgtaa aaatgccaaa accaaataca cgctggagcg cgtgggggtt gagacgttta
     2821 aagcggaagt ggagcgtcgc gcggggatca aatttgaacc gatccgtcca tatgagttca
     2881 ccggacgagg cgatcgtatt ggctgggtta agggcattga tgataactgg cacctgacgc
     2941 tgtttatcga aaatggtcgc atccttgatt atcccgggcg tccgctgaaa accggcctgc
     3001 tggagatcgc gaagatccac aaaggcgatt tccgcattac ggcgaaccag aatctgatca
     3061 tcgccggtgt accggaaagc gagaaagcga agatcgagaa gatcgccaaa gagagcgggt
     3121 taatgaatgc cgtcacgccg cagcgtgaaa actcgatggc ctgcgtgtca ttcccgactt
     3181 gcccgctggc gatggcggaa gcagagcgtt tcctgccgtc ttttatcgac aacatcgata
     3241 atttaatggc gaaacatggt gtcagcgatg agcatatcgt gatgcgtgta acaggctgcc
     3301 cgaacggttg tggtcgcgcg atgctggcgg aagtgggcct ggtgggtaaa gcgccgggtc
     3361 gctacaacct gcatcttggc ggcaaccgca ttgggacacg tatcccacgg atgtataaag
     3421 aaaacatcac cgagccggaa atcctggcgt cgcttgatga actgataggg cgctgggcga
     3481 aagagcgcga agcgggtgaa ggcttcggcg actttacggt gcgtgcgggc atcattcgcc
     3541 cggtgctcga tccggcgcgc gatttgtggg attaaccatc agcccggtct tgtaggcctg
     3601 ataagaacgc gtgagcgtcg catcaggcaa ggcaaacagt gaggaatcta tgtccaaact
     3661 cgatctaaac gccctgaacg aactgccgaa ggtagatcgc attctggcgc tggcggaaac
     3721 taacgccgaa ctggaaaaac tggacgctga aggccgcgta gcctgggcgc tggataatct
     3781 gcccggtgaa tatgtacttt cttccagctt tggcattcag gcggcggtga gcctgcatct
     3841 ggtgaatcaa attcgcccag atattccggt gatcctcacc gatacgggtt acttgttccc
     3901 ggaaacctac cgctttattg acgagttaac ggacaaactc aagctcaacc tgaaagtgta
     3961 ccgtgctacc gaaagcgcag cctggcagga agcacgctac ggaaaactgt gggagcaggg
     4021 cgttgaaggc attgaaaagt acaatgacat caacaaagtc gaaccgatga accgggctct
     4081 gaaagaactt aacgcgcaaa cctggtttgc tggcctgcgc cgtgaacaat ccggcagtcg
     4141 cgccaattta ccggtgctgg caattcagcg tggcgtattt aaagtgctgc cgattatcga
     4201 ctgggataac cgaactattt atcagtacct gcaaaaacat ggcctgaaat atcacccatt
     4261 atgggatgaa ggatatttat cggtcggtga tacccataca acccgtaaat gggaacctgg
     4321 catgtcggaa gaagaaacac gtttctttgg cttaaaaagg gaatgtggat tgcacgaagg
     4381 gtaaatattg ccggataaat taaacgcctc tgtcagaaat gatgggggcg tttttatttt
     4441 gcgagcagta ttcctgattt taaacgtgaa cgccgctgga agaattatca ggtatagaat
     4501 ggcgtcgggt gcttgaggct gtctggcgtt aagcattcgc gaggttccag atggacaaaa
     4561 gccccaggcg atatttctat caacctgagg ccagcgttcg aacccaaaca attcgaatgt
     4621 tagtctcttc tttgcaggga ggcaagacat gctgacaaaa tatgcccttg tggcaatcat
     4681 agtgctgtgt tttacagtac tgggattcac gctgatggta ggcgactcgt tgtgtgagtt
     4741 gagtatcaga gaacgtggta tggagtttaa ggcagttctc gcttacgaat cgaagaagta
     4801 gccaccacgc gggggtaaaa ccccgcgtac tgaattgtga tggtttggtc tcctgcaccc
     4861 ttttttaatt tatattgttt a
//
LOCUS       DADMHM010000244         4852 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.249, whole genome shotgun sequence.
ACCESSION   DADMHM010000244 DADMHM010000000
VERSION     DADMHM010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4852)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4852)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4852
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.249"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(75..317)
                     /gene="dsrB"
                     /locus_tag="JN125_003799"
     CDS             complement(75..317)
                     /gene="dsrB"
                     /locus_tag="JN125_003799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein DsrB"
                     /protein_id="HAY8873404.1"
                     /translation="MPEKRNCSTLAQSHRRKTMKVNDRVTVKTDGGPRRPGVVLAVEE
                     FSEGTMYLVSLEDYPLGIWFFNEAGHQDGIFVEKAE"
     gene            426..653
                     /gene="yodD"
                     /locus_tag="JN125_003800"
     CDS             426..653
                     /gene="yodD"
                     /locus_tag="JN125_003800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416463.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide/acid resistance protein YodD"
                     /protein_id="HAY8873405.1"
                     /translation="MKTAKEYSDTAKREVSVDVDALLAAINEISESEVHRSQNDSEHV
                     SVDGREYHTWRELADAFELDIHDFSVSEVNR"
     gene            951..1766
                     /locus_tag="JN125_003801"
     CDS             951..1766
                     /locus_tag="JN125_003801"
                     /EC_number="3.1.3.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyl-3-phosphoglycerate phosphatase-related
                     protein"
                     /protein_id="HAY8873406.1"
                     /translation="MFSIQQPLLVFSDLDGTLLDSHSYDWQPAAPWLSRLREANVPVI
                     LCSSKTSAEMLYLQKTLGLQGVPLIAENGAVIQLAEQWQDIDGFPRIISGISHGEISQ
                     VLNTLREKEHFKFTTFDDVDDATIAEWTGLSRSQAALTQLHEASVTLIWRDSDERMAQ
                     FTARLNERGLQFMQGARFWHVLDASAGKDQAANWIIATYQQLSGKRPTTLGLGDGPND
                     APLLEVIDYAVIVKGLNREGVHLHDEDPARVWRTQREGPEGWREGLDHFFSAR"
     gene            complement(1763..3457)
                     /gene="yedQ"
                     /locus_tag="JN125_003802"
     CDS             complement(1763..3457)
                     /gene="yedQ"
                     /locus_tag="JN125_003802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis regulator YedQ"
                     /protein_id="HAY8873407.1"
                     /translation="MQHETKMENQSWLKKIARRLGPGHVVNLCFIVVLLFSTLLTWRE
                     VVVLEDAYISSQRNHLENVANALDKHLQYNVDKLIFLRNGMREALVAPLDFTSLRNAV
                     TEFEQHRDEHAWQIELNRRRTLSVNGVSDALVSEGNLLSRENESLDNEITAALEVGYL
                     LRLAHNTSSMVEQAMYVSRAGFYVSTQPTLFTRNVPTRYYGYVTQPWFIGHSQRENRH
                     RAVRWFTSQPEHASNTEPQVTVSVPVDSNNYWYGVLGMSIPVRTMQQFLRNAIDKNLD
                     GEYQLYDSKLRFLTSSNPDHPTGNIFDPRELALLAQAMEHDTRGGIRMDSRYVSWERL
                     DHFDGVLVRVHTLSEGVRGDFGSISIALTLLWALFTTMLLISWYVIRRMVSNMYVLQS
                     SLQWQAWHDTLTRLYNRGALFEKARPLAKLCQTHQHPFSVIQVDLDHFKAINDRFSHQ
                     AGDRVLSHAAGLISSSLRAQDVAGRVGGEEFCVILPGASLTEAAEVAERIRLKLNEKE
                     MLIAKSTTIRISASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRVCASDNA"
     gene            complement(3628..3810)
                     /locus_tag="JN125_003803"
     CDS             complement(3628..3810)
                     /locus_tag="JN125_003803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2158 domain-containing protein"
                     /protein_id="HAY8873408.1"
                     /translation="MSFMVSEEVTVKEGGPRMIVTGYSSGMVECRWYDGYGVKREAFH
                     ETELVPGEGSRSAEEV"
     gene            complement(3889..4806)
                     /locus_tag="JN125_003804"
     CDS             complement(3889..4806)
                     /locus_tag="JN125_003804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF808 domain-containing protein"
                     /protein_id="HAY8873409.1"
                     /translation="MLLAGSSLLTLLDDIATLLDDISVMGKLAAKKTAGVLGDDLSLN
                     AQQVSGVRANRELPVVWGVAKGSLINKVILVPLALIISAFIPWAITPLLMIGGAFLCF
                     EGVEKVLHMLEARKHKEDPAQSQQRLEKLAAQDPLKFEKDKIKGAIRTDFILSAEIVA
                     ITLGIVAEAPLLNQVLVLSGIALVVTVGVYGLVGVIVKIDDLGYWLAEKSSALMQALG
                     KGLLIIAPWLMKALSIVGTLAMFLVGGGIVVHGIAPLHHAIEHFAGQQSAVVAMILPT
                     VLNLILGFIIGGIVVLGVKAVAKIRGQAH"
BASE COUNT         1238 a         1308 c         1157 g         1149 t
ORIGIN      
        1 gactaatggt atttttgtca acatgcgcta acacattctg actggtggtt tcccaccagt
       61 caggctgaat aagattactc tgctttctcc acaaagatac cgtcctgatg ccctgcttca
      121 ttaaagaacc agatgccgag cgggtagtct tccagcgaaa ccaggtacat tgtgccttca
      181 ctaaactcct caactgctag taccacgcca ggacgacgcg gaccgccatc cgttttgact
      241 gttacccgat cattcacctt catcgttttc ctcctgtggc tttgtgccag tgtagaacaa
      301 tttcgttttt ctggcagcgc caggcgcgcg cgagtgctga ttttctcgac ggtctatact
      361 taagagatgc caggcggact taacgactgg cggcaacaac agagtaacgg ttgcgaggaa
      421 agatgatgaa aaccgcaaaa gagtacagcg ataccgcaaa acgtgaggtc agcgtcgatg
      481 tcgatgccct gctggcggcg atcaatgaaa ttagcgaaag cgaagttcat cgcagccaga
      541 acgattctga acacgttagc gtcgatggac gtgaatatca tacatggcgt gaattggcgg
      601 atgccttcga actggatatt catgacttca gcgtctctga agtgaatcgt tgaatgcaca
      661 ataaaaaaat cccgaccctg agggggtcgg gatgaaactt gcttaagcaa gaagcactta
      721 aaaaattcgt tacaccagga aatctgatgt gttcatcacc ttatccgcaa tttttttcgc
      781 tgacaagaaa atattcgcga tatgaatgat taacgctact tatgaataga aatgtgacgt
      841 gcgtcacccc ttggtggctc tggcgtcaac gggatcgctc ccgaaaaaat catctttgat
      901 tatttgtgct gttttgagaa tcatcctggt aaggggagaa ctgcgcgacc atgttttcaa
      961 ttcaacaacc actactggtt tttagcgatc ttgatggcac cctgctggac agtcatagtt
     1021 atgactggca accggctgcc ccctggctca gccgtttacg cgaagcgaat gttcccgtca
     1081 ttctctgtag cagtaaaact tcagcggaaa tgctgtactt gcaaaaaacg ttggggttac
     1141 aaggggtacc actgattgcc gaaaatggcg cagtgatcca gcttgctgaa caatggcagg
     1201 atatagacgg ttttccacgc atcatctcag gtattagcca tggcgaaatc agccaggttt
     1261 taaatacgct acgcgagaaa gaacatttta aattcacgac tttcgatgat gtcgacgatg
     1321 caaccatcgc cgaatggacg ggattaagcc gtagccaggc ggcgctgacg cagctgcatg
     1381 aggcgtcggt aacgctaatc tggcgcgaca gtgacgagcg tatggcacaa tttaccgctc
     1441 gtctgaacga acggggctta cagtttatgc agggtgcgcg cttctggcac gtcctggatg
     1501 cctctgccgg aaaagatcag gccgccaact ggattatcgc gacctatcaa caattatcag
     1561 gcaaacgccc aaccacactt ggcctgggcg atgggccaaa cgatgcgccc ttactggagg
     1621 taatagatta cgcggtgatt gtgaaagggc taaaccgtga aggggtgcat ctgcatgatg
     1681 aggatccggc ccgcgtctgg cgaacgcagc gtgaaggacc ggaaggatgg cgtgaagggc
     1741 tggaccattt tttctccgct cgttaagcgt tatcgctcgc gcatacccga ttacgcccgg
     1801 cctgtttagc gagataaagc cgacggtcag ccagtgactg gagttgttca aaatcataat
     1861 caccggtttc ctcgctgcta cttaccccca acgaggcact gatgcgtatc gtcgtactct
     1921 tagcaatcaa catctctttt tcatttaact tcaggcgaat acgttctgcg acttccgcag
     1981 cctccgtcag actcgcgcct ggcagaatca cacaaaactc ctcaccaccg acccgcccgg
     2041 caacgtcctg cgcacgcaag gaactgctaa ttaatccggc agcatgagaa agaacacggt
     2101 cgcccgcctg atgactaaag cggtcattaa tcgctttaaa atggtcaagg tcgacctgaa
     2161 tgacagaaaa aggatgttgg tgcgtctgac acaatttcgc gagcggacgg gctttttcaa
     2221 acagtgcgcc acgattatat aaacgggtta aggtgtcgtg ccacgcctgc cactgcaacg
     2281 agctttgcag aacatacatg ttgctaacca tccggcgaat cacataccag gagatgagta
     2341 acatggtggt aaagagcgcc cacagcaggg ttaatgcaat gctgatactg ccgaaatcgc
     2401 cgcgcacgcc ttcgcttagc gtatggacgc gcaccagcac accgtcgaaa tggtccagac
     2461 gttcccagct aacatagcga ctgtccatac gaatgccgcc ccgcgtgtca tgttccatcg
     2521 cctgcgccag caaggccagt tcacgaggat caaaaatatt ccctgttgga tggtcaggat
     2581 tggaagaggt caaaaatctc agcttactgt catagagctg atactcacca tcgaggtttt
     2641 tatcgatggc gtttcttaaa aattgctgca tggtacgcac gggaatactc atccccagca
     2701 cgccatacca gtagttatta ctgtctaccg gaacactgac ggtaacctgc ggttcagtat
     2761 tgctggcgtg ttccggttgc gaagtaaacc agcgtaccgc gcggtgacga ttttctcgtt
     2821 gcgaatggcc gataaaccag ggttgggtga catagccgta ataacgcgtt ggtacattgc
     2881 gcgtaaacaa ggtcggctgc gtcgaaacgt aaaatccggc acgcgagaca tacatcgcct
     2941 gttcaaccat cgacgaggtg ttgtgcgcca gtcgcagcaa gtaaccaact tccagtgcag
     3001 cggtaatttc attgtcgagg ctttcatttt cgcgagacag gagattcccc tcgctgacta
     3061 atgcatccga tacgccattg actgacaggg tgcgtcgtcg gttgagttca atttgccagg
     3121 cgtgctcgtc gcgatgctgt tcgaactcgg ttacagcatt acgcagtgaa gtgaaatcca
     3181 gtggcgctac gagagcttcg cgcatgccat tacgcaaaaa gatcagtttg tcgacgttat
     3241 actgcaaatg cttatcgagc gcgttggcta cgttttccag atgattacgc tggctggaga
     3301 tataggcatc ttccagcact accacttcac gccaggtcag caaggtggaa aaaagcaata
     3361 ccacgataaa gcagagatta acgacatgac caggccccag gcggcgtgcg atttttttca
     3421 accagctctg gttttccatt tttgtctcgt gctgcaccct gacgactccc aacctgcttt
     3481 tttatgattc tggcataacc tggcgatagc gtaccgcaaa acagcgataa ttttataatg
     3541 gtggcatgat aaaacgcgac tatcattcat tgcaggcatt ggcacaccag gccggaagtg
     3601 atccggcctg gtgttaatga taccctttca aacttcttcc gcagaacgac tcccctcccc
     3661 cggaacaagc tcggtttcat gaaaagcttc ccgcttgacc ccgtaaccgt cataccaacg
     3721 acactcaacc ataccgctgg agtatccggt gacaatcatc cgcgggccgc cctctttaac
     3781 cgtaacttcc tcactaacca taaagctcat actcgcctcc ttttttcgag tgaaacttgt
     3841 tcaccttagt tgaagatggc gaattttgca taatagcctg tgcgagtatt aatgtgcctg
     3901 accgcgtatt ttcgctacgg ctttcactcc cagcaccact atgccgccga tgataaatcc
     3961 aagaatcaga tttaaaacag tcggtaatat catcgccacc actgcacttt gctgcccggc
     4021 gaaatgttca atggcgtgat gcagcggcgc aataccatgt accacaatcc cgccgccgac
     4081 aaggaacatc gccagcgtgc cgacaatcga taacgctttc atcagccagg gcgcaatgat
     4141 caataaccct ttacctaatg cctgcatcag cgcgctggat ttttccgcca gccaataccc
     4201 caggtcatca atcttaacga taacccctac cagaccgtag acgcccacgg tcactaccag
     4261 cgcgatgcct gaaagcacca gcacctgatt aagcaacggc gcttcggcca caatccccag
     4321 cgtgatggcg acgatttcgg cagacaatat aaaatcggta cgaatcgccc cttttatttt
     4381 gtccttttca aacttcagcg gatcctgcgc cgccagcttc tccagacgct gctggctctg
     4441 cgccggatct tctttatgtt tacgcgcctc cagcatatgc agcactttct ctactccttc
     4501 aaagcagaga aacgcgccac caatcatcaa cagaggcgta atcgcccacg ggataaacgc
     4561 actgatgatc agcgccagcg gcaccagaat cactttatta atcagcgatc ctttcgccac
     4621 gccccagacc acgggaagtt cccggttggc ccgcacgcct gaaacttgtt gcgcattgag
     4681 cgataagtca tcccctaata caccggcggt tttcttcgcc gccagtttgc ccatcacgga
     4741 gatatcgtcc agtagtgtgg cgatatcatc gagcaacgtc agtaaactac tcccggccaa
     4801 aagcattccc tctcattttt attgttgaag ggtgtaagta tgaagcaaaa ac
//
LOCUS       DADMHM010000245         4819 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.250, whole genome shotgun sequence.
ACCESSION   DADMHM010000245 DADMHM010000000
VERSION     DADMHM010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4819)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4819)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4819
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.250"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..1036
                     /locus_tag="JN125_003805"
     CDS             <1..1036
                     /locus_tag="JN125_003805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001370218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873410.1"
                     /translation="TSIQMVTLLNALQPGGKCIITGDFQKELAYLQNVILYNDSFLRL
                     DFLGYNAQIIQRSDNTCELTINEPLKNQEISTGNINVNCPLKDIYNEIRRLNVIFSCG
                     TGDIVDLSSLDLRNVDLDYYDFTDKHMANTILNPFKLDSTNFTNANMFQVNFVSSTQN
                     ATISWDYLLKITPVLISISDMYSEEKIKFVESCLNELGDITEEQLKIMRFAIIKSIPR
                     ATLTDKLENELTKEIYKSSSKINNCLNRIKLPKMKEFSSKKIYDYIDIIIEDYENIKE
                     NAYLVVPQINYTMDLNIEDSSSEELIPSRKTKILRTMALKSKNITHMKHITQGIYILP
                     ERNIRMITTF"
     gene            complement(1435..1811)
                     /gene="rnpB"
                     /locus_tag="JN125_003806"
     ncRNA           complement(1435..1811)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="JN125_003806"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(1844..2989)
                     /gene="garK"
                     /locus_tag="JN125_003807"
     CDS             complement(1844..2989)
                     /gene="garK"
                     /locus_tag="JN125_003807"
                     /EC_number="2.7.1.165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312029.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate 2-kinase"
                     /protein_id="HAY8873411.1"
                     /translation="MKIVIAPDSYKESLSASEVAQAIEKGFREIFPDAQYVSVPVADG
                     GEGTVEAMIAATQGSERHAWVTGPLGEKVNASWGISGDGKTAFIEMAAASGLELVPAE
                     KRDPLVTTSRGTGELILQALESGATNIIIGIGGSATNDGGAGMVQALGAKLCDANGNE
                     IGFGGGSLNTLNDIDISGLNPRLKDCVIRVACDVTNPLVGDNGASRIFGSQKGASEAM
                     IVELDNNLSHYAEVIKKALHVDVKDVPGAGAAGGMGAALMAFLGAELKSGIEIVTTAL
                     NLEEHIHDCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGSLTDDVGVVH
                     QHGIDAVFSVLTSIGTLDEAFRGAYDNICRASRNIAATLAIGMRNAG"
     gene            complement(3086..3976)
                     /gene="garR"
                     /locus_tag="JN125_003808"
     CDS             complement(3086..3976)
                     /gene="garR"
                     /locus_tag="JN125_003808"
                     /EC_number="1.1.1.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312030.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxy-3-oxopropionate reductase"
                     /protein_id="HAY8873412.1"
                     /translation="MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADVIAA
                     GAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLA
                     SREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVV
                     HTGEIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLD
                     AKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGLGT
                     ADHSALACYYEKLAKVEVTR"
     gene            complement(4006..4779)
                     /gene="garL"
                     /locus_tag="JN125_003809"
     CDS             complement(4006..4779)
                     /gene="garL"
                     /locus_tag="JN125_003809"
                     /EC_number="4.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000445064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydro-3-deoxyglucarate aldolase"
                     /protein_id="HAY8873413.1"
                     /translation="MESLPVFPNKFKAALAAKQVQIGCWSALSNPISTEVLGLAGFDW
                     LVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVE
                     TKEEAEQAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVD
                     NVDAIAATEGVDCIFVGPSDLAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILA
                     PVEADARRYLEWGATFVAVGSDLGVFRSATQKLADTFKK"
BASE COUNT         1256 a         1279 c         1047 g         1237 t
ORIGIN      
        1 gacctctatt caaatggtca ctttacttaa cgcgttacaa ccaggtggaa aatgcattat
       61 cactggtgat tttcaaaaag aattagcgta cttacaaaat gtaattcttt ataatgactc
      121 gtttcttcgt ctggattttt taggttataa cgcccaaatt attcaacgat cggacaatac
      181 ctgcgaactt accattaatg aaccgttaaa aaaccaggaa atatctacag gcaatatcaa
      241 tgttaattgt ccattaaaag atatttacaa tgaaatcagg aggttgaacg taatctttag
      301 ttgtgggact ggagatatag ttgatctatc ctctctggac ttacgtaatg tcgatttaga
      361 ttattatgat ttcacagata aacatatggc taatactatt ctaaatcctt ttaaattgga
      421 ttcaacaaat tttactaatg ccaacatgtt tcaggttaat tttgttagtt caacacaaaa
      481 cgccacaatc tcctgggatt atttactaaa aataacgcct gttttaataa gtattagcga
      541 tatgtattct gaagaaaaaa tcaagtttgt cgaaagttgt ttaaatgagc ttggggacat
      601 taccgaagaa caattaaaaa ttatgagatt tgcaattata aaatctatac caagggcaac
      661 tcttacagat aaattagaaa atgaattaac aaaagaaata tataaaagct catcgaaaat
      721 caacaattgc ttgaacagaa ttaaattacc aaagatgaaa gaattctcat caaaaaaaat
      781 atatgattac atcgatataa tcattgaaga ttatgaaaat atcaaagaaa atgcttatct
      841 ggtcgtcccc caaattaatt atactatgga tttaaacata gaagactcca gctcagaaga
      901 gttaataccc tcgagaaaga cgaaaattct tcggacaatg gctttgaagt cgaagaatat
      961 aacgcatatg aagcatataa ctcagggaat ctatatttta ccagagagga atatacgtat
     1021 gattacgacc ttttaaatgc aatatagact taataacttc ttacaaaatc tataattaat
     1081 accgtagata ttcattcatc ttaccctgtg caccaaaagc aaaaactcac tgacgcgggt
     1141 ttgaaactga tggcaaccgc aaaaatgcct gatgcgctac gcttatcagg cctacgccag
     1201 ctctgcaata tattgaattt gcgtgctttt gtaggcagga taaggcgttc acgccgcatc
     1261 cggcatgaat aaagcgcact caacaatctg aaacccgccg gaacggttta ttacgtacat
     1321 caggtgaaac tgaccgataa gccgctttct tttgggtata gtgtcgtgga cagtcattca
     1381 tctttctgcc cctccaaaag caaaaacccg ccgaagcggg tttttacgta aatcaggtga
     1441 aactgaccga taagccgggt tctgtcgtgg acagtcattc atctaggcca gcaatcgctc
     1501 actggctcaa gcagcctacc cgggttcagt acgggccgta ccttatgaac ccctatttgg
     1561 ccttgctccg ggtggagttt accgtgccac ggactgttac cagccgcgcg gtgcgctctt
     1621 accgcaccct ttcaccctta cctgatcccg cttgcgcggg ccatcggcgg tttgctctct
     1681 gttgcactgg tcgtgggttt cccccccagg cgttacctgg caccctgccc tatggagccc
     1741 ggactttcct cccctccgcc cgtctccccc gaagaggacg acgacgaagc ggcgactgtc
     1801 tggtcagctt cggcgcgcag tatagagggt ttgcgcgccc ttgtcacccc gcgttgcgca
     1861 ttccaatcgc cagtgtcgcg gcgatattac gtgaagcacg gcagatattg tcataagccc
     1921 cgcggaatgc ttcgtccaac gtacctatgc tggtcaatac gctgaagacc gcatcaatgc
     1981 catgctgatg tacaacgcca acatcatcgg tcaggctacc cgcaatgcca atcaccggtt
     2041 tatggtactt cttcgccacg tttgcgacac caatcggtac cttgccgtga atactctggc
     2101 tgtcaatacg cccttcaccg gtgatcacca gcgtacaatc gtgaatatgt tcttccagat
     2161 tcagcgccgt agtgacgatt tcaataccac ttttcagttc cgcaccaaga aacgccatca
     2221 gcgccgcgcc cataccgccc gcagctcctg cgccggggac atctttcaca tcaacatgca
     2281 gcgctttttt aatgacctcg gcatagtgag agaggttatt gtccagctca acaatcatcg
     2341 cttcactggc tcccttttgt gagccaaaga tgcgcgatgc gccgttatcg cccaccagcg
     2401 gattggtgac atcacaagcg acgcgaatga cgcaatcttt taagcgcgga ttgaggccgg
     2461 aaatatcaat atcattcaga gtattaagac taccgccgcc aaaaccaatt tcattgccgt
     2521 tggcgtcgca taatttcgcc cccagcgcct gtaccatgcc tgcgccgcca tcatttgtag
     2581 cgctgccgcc aatgccgata ataatgtttg tcgcaccgct ctccagcgcc tgcaggatta
     2641 actcgcctgt gccgcgtgaa gtggtcacga gtggatcgcg tttttccgca ggtaccagct
     2701 ccagcccact ggccgccgcc atttcaataa acgcggtttt gccatcgccg gagatccccc
     2761 aactggcatt cactttctcg cccaacggcc ctgtaaccca ggcgtgacgt tcggaaccct
     2821 gggtggctgc aatcatcgct tccaccgttc cttcgccacc gtcggcaacc ggaacagaaa
     2881 cgtactgtgc atcaggaaaa atttcccgaa atcctttttc tatcgcctgc gcaacctcgc
     2941 tggcagataa actttcttta taagagtctg gggcgattac gattttcata cctatgcctg
     3001 ttaccacatg acgccggagg gcgtttctct tattcggcgt ggattccagg cccggattgc
     3061 aatacgccat ccgggcacga cgtcattaac gagtaacttc gactttcgcc agtttttcgt
     3121 agtagcacgc cagagcgcta tgatccgccg ttcctaaacc atctgcacgc agtgcctgca
     3181 tcatctccat aaccgcagct gtgagcggca gttgcgcgcc gacgccgtga gaagtatcca
     3241 gcgcattcgc cagatcctta atatgcagat caatgcggaa gcccggcttg aagttgcggt
     3301 ccatcaccat cggcgctttg gcatccagca cggtactgcc cgccagccca ccgcgaattg
     3361 cctgataaac caggtccggg ttaacgcccg ctttagttgc cagcgttaac gcttctgaca
     3421 tcgcagcaat attcagcgcc acaatgacct gatttgccag tttggtgacg ttacctgcac
     3481 cgatttcccc ggtatgcacc acggaacccg ccatcgcttt catcaaatca tagtatttgt
     3541 cgaaaatagc cttgtcgccg cccaccatca ctgacagcgt accgtcgatg gctttcggtt
     3601 caccgccgct caccggagca tccagcatat caatgccttt cgctttcagc gcttcgctga
     3661 tttcacggct tgccagcggt gcgatagaac tcatatcgat caataccgta cctggcttcg
     3721 cgccttcaat aatgccattc tcacccagcg ccacctcttt cacatgaggg gagtttggca
     3781 gcatggttat gatgacgtcg cactgttcag cgatcgcttt agccgtagac gctgtttctg
     3841 cacctgcagc aatcacgtca gcaatagctt ctgggttacg gtcagcaacc accagcgagt
     3901 aacctgcttt cagaaggttt ttactcattg gtttacccat aatccccagg ccaataaaac
     3961 caactttcat agtcatatca atcatctctc ttgttgcggt ggtggttatt ttttaaaggt
     4021 atcagccagt ttctgagtgg cagagcggaa gacgccaaga tcgctgccga cagccacaaa
     4081 cgtcgcgccc cattccagat aacgacgcgc atcggcttcg accggcgcga gaataccgct
     4141 gggtttgccg tgcgcactgg cacggttaaa aatatgctga attgcttttt gtacatccgg
     4201 atgcgaggca ttgccgagat ggcccaatgc cgcagccaga tcgctggggc cgacgaagat
     4261 acagtctaca ccttcggtag cggcaatagc atcgacgtta tctacgccct gctgactttc
     4321 tatctggacc agaatagtga tgttcttgtt cgactgagcg aaataatccg ccacggtgcc
     4381 aaacatattg gcgcggtgag aaacggagac gccgcgaatg ccttccggcg ggtaacgagt
     4441 tgatgccacc gcctgctctg cttcctcttt tgtttctaca aaaggaatca ggaagttata
     4501 gaaaccgata tccagaagac gcttaataat taccggctcg ttggtcggca ctcgcactac
     4561 tggcgcgctg gcgctgcctt tcagggccat taactgcgga ataaacgtgg aaatatcgtt
     4621 tggcgcatgt tcgccatcca gcaccagcca gtcaaaccca gccaaaccaa gaacttcagt
     4681 gctaatcggg ttagagagtg ctgaccagca accaatttgt acctgtttcg cagccagtgc
     4741 ggctttgaat ttattcggga aaacaggtaa tgactccaac ttattgatag tgttttatgt
     4801 tcagataatg cccgatgac
//
LOCUS       DADMHM010000246         4755 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.251, whole genome shotgun sequence.
ACCESSION   DADMHM010000246 DADMHM010000000
VERSION     DADMHM010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4755)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4755)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4755
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.251"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(65..960)
                     /locus_tag="JN125_003810"
                     /pseudo
     CDS             complement(65..960)
                     /locus_tag="JN125_003810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312014.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
     gene            1065..1766
                     /locus_tag="JN125_003811"
     CDS             1065..1766
                     /locus_tag="JN125_003811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pirin family protein"
                     /protein_id="HAY8873414.1"
                     /translation="MITTRTARQCGQADYGWLQARYTFSFGHYFDPKLLGYASLRVLN
                     QEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYS
                     EHNLSKDKPLTRMQLWLDACPQRENPLIQKLALNMGKQQLIASPEGTMGSLQLRQQVW
                     LHHIVLDKGESANFQLHGPRAYLQSIHGKFHALTHHEEKAALTCGDGAFIRDEANITL
                     VADSPLRALLIDLPV"
     gene            1789..1953
                     /locus_tag="JN125_003812"
     CDS             1789..1953
                     /locus_tag="JN125_003812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312016.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873415.1"
                     /translation="MSKKSAKKRQPVKPVVAKEPARTAKNFGYEEMLSELEAIVADAE
                     TRLAEDEATA"
     gene            complement(2087..3397)
                     /locus_tag="JN125_003813"
     CDS             complement(2087..3397)
                     /locus_tag="JN125_003813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine dehydratase subunit alpha family protein"
                     /protein_id="HAY8873416.1"
                     /translation="MFDSTLNPLWQRYILAVQEEVKPALGCTEPISLALAAAVAAAEL
                     EGPVERVEAWVSPNLMKNGLGVTVPGTGMVGLPIAAALGALGGNANAGLEVLKDATAQ
                     AIADAKALLAAGKVSVKIQEPCNEILFSRAKVWNGEKWACVTIVGGHTNIVHIETHNS
                     VVFTQQACVAEGEQESPLTVLSRTTLAEILKFVNEVPFAAIRFILDSAKLNCALSQEG
                     LSGKWGLHIGATLEKQCERGLLAKDLSSSIVIRTSAASDARMGGATLPAMSNSGSGNQ
                     GITATMSVVVVAEHFGADDERLARALMLSHLSAIYIHNQLPRLSALCAATTAAMGAAA
                     GMAWLVDGRYETISMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDT
                     AVTGNEGIVAHDVEQSIANLCALASHSMQQTDRQIIEIMASKAR"
     gene            complement(3425..>4755)
                     /locus_tag="JN125_003814"
     CDS             complement(3425..>4755)
                     /locus_tag="JN125_003814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026203.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease"
                     /protein_id="HAY8873417.1"
                     /translation="EIASNKGVIADASTPAGRAGMSESEWREAIKFDRTDTGWVIMSI
                     GMAIGAGIVFLPVQVGLMGLWVFLLSSVIGYPAMYLFQRLFINTLAESPECKDYPSVI
                     SGYLGKNWGILLGALYFVMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGLV
                     LICILVAISSRGEKLLFKISTGMVLTKLLVVAALGVSMVGMWHLYNVGSLPPLGLLVK
                     NAIITLPFTLTSILFIQTLSPMVISYRSREKSIELARHKALRAMNIAFGILFVTVFFY
                     AVSFTLAMGHDEAVKAYEQNISALAIAAQFISGDGAAWVKVVSVILNIFAVMTAFFGV
                     YLGFREATQGIVMNILRRKMPAEKINENLVQRGIMIFAILLAWSAIVLNAPVLSFTSI
                     CSPIFGMVGCLIPAWLVYKVPALHKYKGMSLYLIIVTGLLLCVSPFLAFS"
BASE COUNT         1204 a         1377 c         1136 g         1038 t
ORIGIN      
        1 ttggttcaaa ttaatcttag aattggggcg atatttcgcc cctttttatt aacaataata
       61 aatattattt tccgctaaaa agtttgggaa tttcccgcag acaccaggat ttcgcttccc
      121 ccatactgtc acgacgccag gccataataa tatcgatctc gctggtcgat tccgggctga
      181 cgacacgcaa ccgcccttcc gcaatatctt tttcgaccat cggatacggc atcgtcgcca
      241 cgccaagccc cgccagtaat gcctgacgtt tatcttcaat cgtgctcacc gttaagcgcg
      301 gctgtttgtc cagcagctgt acggtcaaca ccgggcgctc acgagcggta tccgctaccg
      361 caattccacg atatttcacg cgcgtcactt cagataacgg ttccggctcc tgatgaatcg
      421 ggtgatcagg cgcggcaacg tagacgttca ttaaggtata gagcttgcgc gagttgatct
      481 ccgacgagga acgaaaatgc atatccggcg cgataacgat atccgccccc cctgctccag
      541 tcgttcccac gcccccgcca gcacttcggt gatgattgcc agttgggtat tggcttttgc
      601 cgccagtttg tcgattaacg ggaaaaaggc aggtgtcggt accagcgcct cggtcacaat
      661 ggtgagatgc gtttcccaac cgcgcgcgag ggcttccgca tcggtagtca gtttatctgc
      721 tgcttccagc aaaacgcgcc ctcgctccag caacatcctc ccgacattgg tgaatttggt
      781 gcgatggccc gagcggtcaa acagcaccac atccagctct tcttccagtt tttgcatggt
      841 gtagctaagt gcggaaggca cgcgtcccag ctcatccgcc gccgccgcaa aactgccccg
      901 gcgatcgatc gcatccataa cccgtagtgc ttccagcgtt aatgcccttt ctttggccat
      961 ttcgttctca ttcaggaaat ttgaacatac cgggcagaat atctggctaa caatgtagcg
     1021 tccagcccct taccataaaa ggaagtaaag agaggtcaag aattatgatt actacccgaa
     1081 ctgccaggca gtgtggacaa gcagactacg gatggttgca ggcccggtat actttttcct
     1141 ttggacacta cttcgacccg aaattgttag gctatgcctc cctgcgtgtg cttaaccagg
     1201 aagtgctggc cccaggtgcc gcctttcagc cgcgaaccta tcccaaagtc gatattttaa
     1261 atgtgattct ggatggagaa gcagagtatc gcgacagcga aggcaatcat gttcaggcca
     1321 gcgccggtga ggcgttgctg ctctctaccc agccgggtgt cagctacagc gaacacaatc
     1381 tcagcaaaga caaaccgtta acacgaatgc agctttggct ggacgcctgc ccgcagcgag
     1441 agaatccgct gattcaaaaa ctggcgctta atatgggcaa gcagcaatta atcgcctcgc
     1501 cagagggtac gatgggaagc ctgcaattac gccagcaagt gtggctgcac catatcgtgc
     1561 tcgacaaagg cgaaagtgcg aatttccagt tgcatgggcc acgcgcgtat ttgcaatcga
     1621 ttcacgggaa atttcatgcg cttacgcatc atgaagagaa agcggcgctg acctgcggtg
     1681 atggggcgtt tattcgtgac gaggctaaca ttacgctggt tgccgattcc ccactgcgcg
     1741 ctttgctgat agatttgcct gtctagttgt ttttacaggg agatgatgat gagtaaaaaa
     1801 tcggccaaaa agcgccagcc agtgaagccc gtggtggcga aagaacctgc tcgcaccgcc
     1861 aaaaattttg gctatgaaga gatgttgagc gagctggaag ccatcgtcgc ggatgctgaa
     1921 acgcgtttag ccgaggatga agctaccgcg taaagacagg ttgccggatg cggcgaaaac
     1981 gccttatccg gcctacaaaa tccaacaaca ttaacgaatt aaacaacccg taggccggat
     2041 aaggtgcgcc agcatcgcat ccggcacaat actcaaaacc tggcgtttat ctggccttgc
     2101 tcgccataat ctcgataatc tgccgatccg tttgctgcat cgaatggctt gctaacgcac
     2161 acaggttggc aatcgactgc tcaacatcat gcgccacgat cccttcattg ccggtcacgg
     2221 cggtatcatc cagcgccatt aacaccgctt tccacgcagc cgaagcactg gtcgaaacct
     2281 tcatcgcgca gctgttcgac gcaccatcgc aaatcatgcc gctgacatcg ccgatcatac
     2341 tgctgatcgc catcgagata gtttcataac gcccatccac cagccatgcc atcccggcgg
     2401 cggcccccat tgctgcggtc gttgcggcac aaagtgcaga caaacgcggt aactggttat
     2461 ggatgtaaat tgcgctcaaa tgagaaagca tcagcgcacg cgccagtcgt tcatcatccg
     2521 ctccgaagtg ttctgctaca accaccacag acattgttgc ggtgatcccc tggttacccg
     2581 agccggagtt actcatagcc ggaagcgtag cgccgcccat acgcgcatcg gatgccgcgc
     2641 tggtacgaat cacaatggat gaagagagat ctttcgccag caaaccgcgc tcgcactgtt
     2701 tttccagcgt cgcgccaata tgcagccccc acttaccgct caaaccttcc tgcgataacg
     2761 cacaatttag cttcgcggaa tcgagaataa agcggatcgc cgcaaacggg acttcattga
     2821 cgaacttcag gatctcagcc agcgtcgttc tggaaagcac cgtcagcgga gactcttgct
     2881 cgccctctgc cacacacgcc tgctgggtaa acaccacact attgtgcgtc tcaatatgca
     2941 caatgttggt atgcccgccg acgatggtga cacacgccca cttctcaccg ttccagactt
     3001 tggcgcgtga gaagaggatt tcattgcaag gttcctggat cttaacggag actttccccg
     3061 ccgccagcag tgctttggca tcggcaattg cctgcgcagt tgcgtctttc agcacttcca
     3121 gcccggcgtt ggcatttcca cctaacgccc ccagcgccgc cgcaatcggc agccccacca
     3181 ttcccgtgcc gggaacggtg acgcccagac cgttcttcat cagatttggc gaaacccagg
     3241 cttctacacg ttcaaccgga ccttccagtt ctgccgcagc aaccgccgcc gccagcgcca
     3301 gtgaaatcgg ttcagtacat cccagcgccg gttttacttc ctcctgaacg gcgaggatgt
     3361 aacgctgcca taacggattt aaagtcgaat caaacatatt aaaaacctta aaatttcagg
     3421 taaatcaaga aaatgccagg aacggagaaa cacaaagcaa caaaccagtg acgataatca
     3481 ggtacagaga catccctttg tatttgtgca atgccggtac tttgtaaacc agccacgccg
     3541 ggatcaggca ccctaccatg ccgaaaatcg ggctacagat agaggtgaag ctcaacaccg
     3601 gtgcgttcag tacgatggcg ctccaggcca gcaaaatggc gaaaatcatg atgccgcgct
     3661 gaacaagatt ttcgttaatc ttctcggcag gcatcttgcg acgcaggatg ttcattacga
     3721 tcccttgcgt tgcttcgcga aagcctaaat agacgccaaa gaatgcagtc atgacagcaa
     3781 agatattgag aatgacgctg accactttca cccacgctgc gccgtcaccg ctaataaact
     3841 gtgcggcaat cgccagcgcg gaaatattct gctcgtaggc ttttaccgct tcgtcatgtc
     3901 ccatcgccag cgtgaacgac acggcgtaga aaaagacggt gacaaataaa atgccaaacg
     3961 cgatattcat tgcccgcaat gctttatgcc gcgccagttc aattgatttt tcccgcgagc
     4021 gataagagat caccatcggg cttaacgtct ggataaacag aatcgacgtc agggtaaacg
     4081 gcagcgtaat aatggcgttt ttcaccagca gccccagcgg cggtagcgaa ccgacgttat
     4141 acagatgcca cattcccacc atcgacacgc ccagcgcagc gactaccagc agcttggtca
     4201 gcaccatgcc ggtcgaaatt ttgaataaca atttctcgcc gcgtgaagag atcgccacca
     4261 gaatgcaaat cagtaccaga ccataaaagg gactgtctga cagcaaccct tccgtcacgc
     4321 cgaaggtatg cagataggaa gcactatcgt tggtgatggc ggtggaatag acgaacatcc
     4381 aaatcaccag cattacgaaa tagagcgcac ctaacaggat gccccagttt ttacctaaat
     4441 aaccgctaat gacactcggg taatctttac attctggtga ttctgccagc gtattaataa
     4501 acaaccgctg aaacagatac attgccgggt aaccaatcac cgatgagagc aaaaataccc
     4561 acaatcccat caaaccgacc tgcaccggga gaaaaacaat ccccgcgcca atcgccatcc
     4621 cgatactcat aatcacccag ccggtgtcag ttctgtcgaa tttgatcgct tctcgccact
     4681 cgctctcact cattccagca cgacccgccg gggtcgaagc gtctgcaatg acgcctttat
     4741 tcgatgcaat ttcca
//
LOCUS       DADMHM010000247         4692 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.252, whole genome shotgun sequence.
ACCESSION   DADMHM010000247 DADMHM010000000
VERSION     DADMHM010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4692)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4692)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4692
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.252"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..1335
                     /locus_tag="JN125_003815"
     CDS             <1..1335
                     /locus_tag="JN125_003815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000874238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialate O-acetylesterase"
                     /protein_id="HAY8873418.1"
                     /translation="FTTGADGTYSDASGASENSTRWGVDKPLYKDLIGRTKAALEKNP
                     KNVLFAVVWMQGEFDFGGTPANHAAQFGALVDKFRADLADMAGQCVGGSAGGVPWICG
                     DTTYFWKQKNESTYQTVYGSYKNKTEKNIHFVPFMTDENGVNVPTNKPEEDPDIPGIG
                     YYGSKWRDSSATWTSQDRASHFSSWARRGIISDRLATAILSCAGKSSAFVNGTAGVVV
                     PDRPVTTSESVIFYDAKKATDNQLKPYGWDGMYGRRTLVDDSGNKALRIEKNNSAKSW
                     SMYCDIAADKAKLLLEKGGEIAVRFKIPENVNLETTRNKYAFGLYWRIAEWPGEGGEG
                     HLSSFFVQTDKASINIAYHHTVNQQKELGTFGAFDHDWHTLAFKFKGSNSINVTPVLD
                     GVDGQAFDLVKWANTANGLNRFVITDITGSAETYPVLIDTVEVKANKAGAAA"
     gene            1474..1656
                     /locus_tag="JN125_003816"
     CDS             1474..1656
                     /locus_tag="JN125_003816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000142783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1378 family protein"
                     /protein_id="HAY8873419.1"
                     /translation="MTFIHQVMLYFCTAVCVLYLLSGGYRAVRDFWCRQIDKRAAEKI
                     SASQSAGSKPEEPVTP"
     gene            1580..1909
                     /locus_tag="JN125_003817"
     CDS             1580..1909
                     /locus_tag="JN125_003817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001427342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF826 domain-containing protein"
                     /protein_id="HAY8873420.1"
                     /translation="MIKGPLRKSAPVSQPEANPKNPLLLNNPFQRENPMSEITSLVTA
                     EAVKEVRSALKQKLRQNLESRLDAEVDAILDELLGVAAVPEPEGIAGDGSASDGGEPT
                     PDSDMMM"
     gene            1986..2201
                     /locus_tag="JN125_003818"
     CDS             1986..2201
                     /locus_tag="JN125_003818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holin"
                     /protein_id="HAY8873421.1"
                     /translation="MYQMEKITTGVSYTTSAVGTGYWFLQLLDRVSPSQWAAIGVLGS
                     LLFGLLTYLTNLYFKIREDRRKAARGE"
     gene            2206..2550
                     /locus_tag="JN125_003819"
     CDS             2206..2550
                     /locus_tag="JN125_003819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdfR family protein"
                     /protein_id="HAY8873422.1"
                     /translation="MKKKYELVVKGINNYPNKITVTVALEIGGYPSLLLPDVAISLDR
                     TEDATLEFYEAEAKKQAKQFFMDVAAGLCEGDGPLPEKRPVILEAQDVLITYRGKLPG
                     IITGSLKTPPLA"
     gene            2601..3134
                     /locus_tag="JN125_003820"
     CDS             2601..3134
                     /locus_tag="JN125_003820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HAY8873423.1"
                     /translation="MNTKIKYGLSAAVLALIAAGAPAPEILDQFLDEKEGNHTTAYRD
                     GAGIWTICRGAILVDSKPVVPGMKLSKEKCDQVNAIERDKALAWVERNIKVPLTEPQK
                     AGIASFCPYNIGPGKCFPSTFYRRINAGDRRGACEAIRWWIKDGGRDCRIRSNNCYGQ
                     VSRRDQESALACWDIDR"
     gene            3291..3473
                     /locus_tag="JN125_003821"
     CDS             3291..3473
                     /locus_tag="JN125_003821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310767.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873424.1"
                     /translation="MAKYKRILLRLTMKNGLELKAPVTDDISRALAFAIKWMAVGVAV
                     SPMLYGLAKLVIALKS"
     gene            3631..4089
                     /locus_tag="JN125_003822"
     CDS             3631..4089
                     /locus_tag="JN125_003822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001487958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysis protein"
                     /protein_id="HAY8873425.1"
                     /translation="MLSAFTVILLVVCGALWLATDHYRDNAITYKAQRDKKARELELA
                     NATITDMQQRQRDVAALDARYSRELADARAENETLRADVAAGRKRLRINATCSGTVRE
                     ATGTSGMDNATGPRLADTAERDYFTLRERLMTMQKQLEGAQEYIRTQCIN"
     gene            4113..4337
                     /locus_tag="JN125_003823"
     CDS             4113..4337
                     /locus_tag="JN125_003823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873426.1"
                     /translation="MKKLLVTVKPFQGTIPFRILQRGRVLVEGSFSGKCTQLHSRTFQ
                     VNATNEELTVECTMNAAKCRMVSAALQPVC"
BASE COUNT         1225 a         1021 c         1337 g         1109 t
ORIGIN      
        1 ttcaccaccg gagctgatgg cacatacagt gacgcgagtg gtgcctcgga gaattcaacc
       61 cgctggggtg tggacaagcc gctgtataag gaccttatcg gtcgaacaaa agcggcactg
      121 gagaagaacc cgaaaaatgt gctgtttgcc gtggtgtgga tgcaggggga atttgatttt
      181 ggcggtacgc cggcaaatca tgccgcacag tttggtgcgc tggttgataa attccgtgca
      241 gacctggcgg atatggcagg ccagtgcgtc ggtggctctg ctggcggtgt tccctggata
      301 tgcggggaca cgacgtattt ctggaagcag aagaacgaat ccacgtacca gacggtgtac
      361 ggcagctata aaaataaaac ggaaaagaat atccatttcg taccgttcat gaccgatgag
      421 aacggggtga atgtgccgac gaacaaaccg gaagaagacc cggacattcc gggtatcggt
      481 tattacggtt cgaaatggcg tgacagctca gccacctgga cgtcacagga cagggcgagc
      541 catttcagtt catgggctcg ccgtgggatt atttccgacc gtctggcaac ggcgattctg
      601 agctgcgcgg gtaagtcttc tgcgtttgtt aatggtactg ccggggtggt tgttccagac
      661 aggccggtta ccacctcaga gtctgtaatt ttttacgatg ccaaaaaagc tacagacaat
      721 cagctgaaac cttatggctg ggacggtatg tatggcagac gcacactggt tgatgacagc
      781 ggcaataaag ctctgcgaat tgagaaaaat aacagcgcga aatcctggtc aatgtactgt
      841 gatattgctg cagacaaggc aaaactttta ctggaaaaag gcggggaaat tgctgtccgg
      901 tttaaaatcc ccgaaaacgt caatcttgag acaaccagaa acaagtatgc ctttggtttg
      961 tactggcgaa tagcggaatg gccgggtgag ggtggtgaag gccatctgag ttctttcttt
     1021 gtccagacag ataaagccag tattaatatt gcataccatc atacagttaa tcaacaaaaa
     1081 gaacttggca cgtttggcgc attcgaccat gactggcata cgcttgcatt taaatttaag
     1141 ggcagtaaca gcattaatgt tactccggtg cttgatggtg tggatggaca ggcgtttgac
     1201 ctggtgaaat gggccaatac tgctaatgga ctcaacaggt ttgtcattac ggatattaca
     1261 ggtagtgcag aaacctaccc tgtacttatt gatacggtgg aagttaaagc aaacaaagct
     1321 ggagcagccg cataattgct aaaaaaagcc gccagcggca ggaatggaag ctggcggagg
     1381 taatcccaat ggagaatgta aagaaaagat gctttcgtac attggttttt aaatgaaaac
     1441 aattctcatt gtcaaccata acggtaagaa attatgacat ttattcatca ggtgatgctg
     1501 tacttctgta cggcggtctg tgtgctgtat cttctttcgg gtgggtacag ggctgtgcgc
     1561 gatttctggt gcaggcagat tgataaaagg gccgctgaga aaatcagcgc cagtcagtca
     1621 gccggaagca aacccgaaga acccgttact ccttaacaac ccctttcagc gagaaaatcc
     1681 catgtcagaa atcacatccc tggtcactgc agaggcagtg aaggaagtcc ggagcgcact
     1741 gaaacagaaa cttcgccaga atcttgagtc gcgtcttgat gcagaagtgg atgccattct
     1801 ggatgagctg ctgggcgtag cagcggttcc tgagccggaa ggtatcgcgg gtgacgggag
     1861 tgcttcagat ggcggtgaac ctacacctga cagcgacatg atgatgtaag catgcgcaag
     1921 ggaccatcgg tgtgtgccgg tggtctttat attgttgtga gcttccggat tgcgggagac
     1981 ggggtatgta ccagatggaa aaaatcacaa caggtgtgtc atacaccacg tcagcggtgg
     2041 gaacgggcta ctggttcctg cagttgctgg acagggtttc cccgtctcag tgggcggcaa
     2101 taggcgtgct ggggagtctg ttgtttgggc tgctgacata tctgactaac ctgtatttca
     2161 aaatcagaga ggaccgtcgt aaggcggcgc ggggagagta aagcgatgaa gaaaaaatac
     2221 gaactggttg ttaaagggat aaataattac ccgaataaga ttactgttac tgtggcactg
     2281 gaaattggtg ggtatccgtc actgttgttg ccagatgtgg cgattagtct tgaccgtact
     2341 gaagatgcca cgctggagtt ttacgaagct gaggcgaaaa agcaggcgaa gcagtttttc
     2401 atggatgttg ctgccgggtt atgtgaaggg gatggtccgt tgccggaaaa gcgccccgta
     2461 attttagagg cgcaggatgt gttgataacc tacagaggaa aactaccggg aataattacg
     2521 ggttctctga agactccacc gctggcctga agacttaaca tatccaggga tttgaaatcg
     2581 ataaaccctg ataaatatcc atgaacacca aaatcaaata cggcctgtcg gctgccgttc
     2641 tggcgctgat tgccgcaggt gcgcctgcgc ctgaaatcct cgaccagttt ctggatgaaa
     2701 aggaaggtaa ccacaccacg gcataccgtg atggcgcggg tatctggacc atctgccgcg
     2761 gtgccatcct ggtggatagt aaacctgtcg tcccgggcat gaagttgtcg aaggaaaaat
     2821 gcgaccaggt caacgccatt gagcgtgata aggcgctggc atgggtggag cgcaatatta
     2881 aagtgccgct gaccgaaccc cagaaagcgg gtatcgcgtc attttgtccc tataacattg
     2941 gccccggtaa gtgtttcccg tcgacgtttt acagacggat taatgctggt gaccgcaggg
     3001 gagcatgcga agcgattcgc tggtggatta aggacggtgg cagagactgc cgtatccgct
     3061 caaataattg ctacggtcag gtatcccggc gagaccagga aagtgcgctg gcgtgctggg
     3121 acatcgacag ataagcagaa tattttgctg aaaaataagg catgagcacg cggacggata
     3181 acacgaaatc ctgcgaactg gcgaaacgta agtgaataaa agtaaaaacc ccgtttgttg
     3241 gcaccaagcg gggttttgtg tttctgacct tgagtaaggc aagggagaac atggcgaagt
     3301 ataaacgaat tctgttgagg ttgaccatga aaaacggcct tgaactgaaa gcgcctgtaa
     3361 ctgatgacat cagcagagca ctggcttttg ccattaagtg gatggcggtc ggtgttgctg
     3421 tgtccccgat gctgtatggg ctggcaaaac tggtcattgc gttgaaatcg tgaagggagg
     3481 attaagcatg tcagacaaac tcataacgct ggcgaagatc ctctgtgtaa ttgtcggcat
     3541 ttcattttca ctaatgctgg ttgctctttt tctttccatg gcctggatga tgttgtcttc
     3601 gtcggggctg ctggggtgaa cataaaccga atgctttccg cgtttaccgt tattctgctg
     3661 gtggtctgtg gtgcgctgtg gctggcaaca gaccattacc gtgataacgc catcacctac
     3721 aaagcgcagc gcgataaaaa agccagagag ctggagctgg caaacgcaac cattactgac
     3781 atgcagcagc gccagcgtga tgttgctgcg cttgatgcca gatactcaag ggaattagcc
     3841 gatgcgagag ctgaaaatga aactctgcgt gctgatgttg ccgctggtcg taagcgcctg
     3901 cggatcaacg ccacctgctc cggtaccgtg cgtgaagcca ccggcacctc cggaatggat
     3961 aatgcaaccg gcccccgact ggcagacacc gctgaacggg attatttcac cctcagagag
     4021 cggttgatga caatgcagaa gcaactggaa ggggcgcagg aatatatccg cactcagtgt
     4081 attaactagt atttttgtta tccggagaat gcatgaagaa attactggta accgtaaagc
     4141 cttttcaggg aacaattccg ttccgtattt tgcagcgtgg tcgtgttctt gttgaaggtt
     4201 cgttcagtgg taaatgtacg caattacact cccggacctt tcaggtgaat gccacgaatg
     4261 aagagctaac cgttgagtgt acgatgaatg ccgctaaatg ccgcatggta tccgctgcat
     4321 tacagccagt gtgttgagcg accttattaa ccatgcgcgg tattgtcgcc gtatccccgc
     4381 attaacagag accgcagccc gaccgggaga ctcctctgcg cgagtgtgcg gggataatca
     4441 aaaacgatac acaccggggt ttaccgcgtt aacggagcgc ggcgttgtcc cctcatggtc
     4501 gctggtccgg tgcgatggtg gaagaaaccg gacgatgtgt tacctcgcaa gctctgttat
     4561 gtcatgtgtc tgatttgtga tttaagtcgg ataattgtcg ttgccattaa gcagaggatt
     4621 gatgaccgac agggtggcat tgttagaata agacttattc ttatctgtgc cgggaatgaa
     4681 aatgaaaaga aa
//
LOCUS       DADMHM010000248         4666 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.253, whole genome shotgun sequence.
ACCESSION   DADMHM010000248 DADMHM010000000
VERSION     DADMHM010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4666)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4666)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4666
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.253"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..755)
                     /locus_tag="JN125_003824"
     CDS             complement(<1..755)
                     /locus_tag="JN125_003824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416329.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic diguanylate phosphodiesterase"
                     /protein_id="HAY8873427.1"
                     /translation="MQKAQRIIKTYRRNRMIVCTICALVTLASTLSVRFISQRNLNQQ
                     RVVQFANHAVEELDKVLLPLQAGSEVLLPLIALPCSVAHLPLRKQAAKLQTVRSIGLV
                     QDGTLYCSSIFGYRNVPVVDILAELPAPQPLLRLTIDRALIKGSPVLIQWTPAAGSSN
                     AGVMEMINIDLLTAMLLEPQLQQISSASLTVDKRHLLYGNGLVDSLPQPEDNENYQVS
                     SQRFPFTINVNGPGATALAWHYLPTQLPLAVLL"
     gene            complement(886..2250)
                     /gene="sdaA"
                     /locus_tag="JN125_003825"
     CDS             complement(886..2250)
                     /gene="sdaA"
                     /locus_tag="JN125_003825"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HAY8873428.1"
                     /translation="MISLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLDSVTR
                     VAVDVYGSLSLTGKGHHTDIAIIMGLAGNEPATVDIDSIPGFIRDVEEHERLLLAQGR
                     HEVDFPRDNGMRFHNGNLPLHENGMQIHAYNGDEVVYSKTYYSIGGGFIVDEEHFGQD
                     AANEVSVPYPFKSATELLAYCNETGYSLSGLAMQNELALHSKKEIDEYFAHVWQTMQA
                     CIDRGMNTEGVLPGPLRVPRRASALRRMLVSSDKLSNDPMNVIDWVNMFALAVNEENA
                     AGGRVVTAPTNGACGIVPAVLAYYDHFIESVSPDIYTRYFMAAGAIGALYKMNASISG
                     AEVGCQGEVGVACSMAAAGLAELLGGSPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPC
                     IERNAIASVKAINAARMALRRTSAPRVSLDKVIETMYETGKDMNAKYRETSRGGLAIK
                     VQCD"
     gene            complement(2434..3012)
                     /locus_tag="JN125_003826"
     CDS             complement(2434..3012)
                     /locus_tag="JN125_003826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HAY8873429.1"
                     /translation="MEYRSLTLDDFLSRFQLLRPQINRETLNHRQAAVLIPIVRRPQP
                     GLLLTQRSIHLRKHAGQVAFPGGAVDDTDASVIAAALREAEEEVAIPPSAVEVIGVLP
                     PVDSVTGYQVTPVVGIIPPDLPYRASEDEVSAVFEMPLAQALHLGRYHPLDIYRRGDS
                     HRVWLSWYEQYFVWGMTAGIIRELALQIGVKP"
     gene            complement(3016..4377)
                     /gene="pabB"
                     /locus_tag="JN125_003827"
     CDS             complement(3016..4377)
                     /gene="pabB"
                     /locus_tag="JN125_003827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component 1"
                     /protein_id="HAY8873430.1"
                     /translation="MKTLSPAVITLPWRQDAAEFYFSRLSHLPWAMLLHSGYADHPYS
                     RFDIVVAEPICTLTTFGKETVVSESEKRTTTTDDPLQVLQQVLDRADIRPTHNEDLPF
                     QGGALGLFGYDLGRRFESLPEIAEQDIVLPDMAVGIYDWALIVDHQRHTVSLLSHNDV
                     NARRAWLESQQFSPQEDFTLTSDWQSNMTREQYGEKFRQVQEYLHSGDCYQVNLAQRF
                     HATYSGDEWQAFLQLNQANRAPFSAFLRLEQGAILSLSPERFILCDNSEIQTRPIKGT
                     LPRLPDPQEDSKQAEKLANSAKDRAENLMIVDLMRNDIGRVAVAGSVKVPELFVVEPF
                     PAVHHLVSTITARLPEQLHASDLLRAAFPGGSITGAPKVRAMEIIDELEPQRRNAWCG
                     SIGYLSFCGNMDTSITIRTLTAINGQIYCSAGGGIVADSQEEAEYQETFDKVTKILRQ
                     LEK"
     gene            4451..4630
                     /locus_tag="JN125_003828"
     CDS             4451..4630
                     /locus_tag="JN125_003828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YoaH family protein"
                     /protein_id="HAY8873431.1"
                     /translation="MFAGLPSLTHEQQQKAVERIQELMAQGMSSGQAIALVAEELRAN
                     HSGERIVARFEDEDE"
BASE COUNT         1170 a         1198 c         1214 g         1084 t
ORIGIN      
        1 cttagcagca ccgccagcgg taattgtgtt ggaagatagt gccatgccag cgccgtagcc
       61 cccggaccat taacgttaat ggtaaaagga aagcgttgcg aagaaacctg atagttttca
      121 ttgtcttcag gttgcggaag ggaatctacc agcccattac catagagcaa atgccgtttg
      181 tccaccgtca ggctggcgct actgatttgc tgcagttgtg gctcaaggag cattgccgtc
      241 agtaagtcga tgttaatcat ctccatgacc ccagcattgc tactgcccgc tgcaggcgtc
      301 cattgaatca aaaccggact gcctttaatc agggcacggt cgatcgtcag gcgtaaaagt
      361 ggttgcggtg caggaagttc agccagaatg tccacgacgg gcacattgcg ataaccaaaa
      421 atgctggagc aatagagtgt gccgtcttgc accaggccaa tggatcgcac agtttggagt
      481 tttgccgcct gtttacgtaa tggcaaatgg gcgacagagc agggcagggc aatcagcgga
      541 agcaagactt cgctacctgc ctgtagggga agcagtactt tatctaattc ctctacagcg
      601 tgattggcga attgtactac ccgttgttga tttaagttac gctgtgaaat aaatcgcacg
      661 ctcagggtcg aagcgagcgt aacgagtgcg caaatcgtac aaacaatcat tcgattacgt
      721 cgataggttt taatgatccg ttgtgctttt tgcatgcggg ccaccctgta agcgtatggc
      781 gacaaacgcc tgacgcaaca gtagatgtgt agtggggaat attacagcag acgagaaagc
      841 gggtataaat tcgcccatcc gttgcagatg ggcgagtaag aagtattagt cacactggac
      901 tttgattgcc agaccaccgc gtgaggtttc gcggtatttg gcgttcatgt ccttaccggt
      961 ttcgtacatc gtttcgatga ccttatccag cgagacgcgc ggtgcactgg tgcggcgcag
     1021 agccatccgt gcggcgttaa tcgccttcac agaggcaatg gcattacgct caatgcacgg
     1081 cacctgaacc tgccctgcaa ccgggtcgca ggttaaacca aggttgtgtt ccatgccaat
     1141 ttccgccgcc acgcaaacct gttccgggct accgcccagc agttctgcaa gacccgcagc
     1201 agccattgaa caggcaacac ccacttcgcc ctggcaacca acttccgcac cggaaataga
     1261 ggcgttcatt ttatacaatg caccaatcgc gcccgctgcc ataaagtaac gggtatagat
     1321 gtccgggctg accgattcaa taaagtggtc atagtaagcc agcactgccg gaacgatacc
     1381 gcaggcaccg ttggttggcg cagttaccac acgaccaccg gcggcgtttt cttcgttaac
     1441 tgccagcgca aacatgttta cccagtcaat gacattcatc ggatcgttag acagtttatc
     1501 gctggaaacc agcatccggc gcagggcaga cgcacgacgt ggcacgcgca gcgggcctgg
     1561 cagtacacct tcggtgttca tcccgcgatc gatacatgcc tgcatggttt gccagacatg
     1621 cgcgaaatac tcgtcgatct ctttcttgct gtgcagcgcc agttcgttct gcatagcgag
     1681 acctgacagc gaatagccgg tttcattaca gtacgcgagc agttcggtgg cagatttgaa
     1741 cggatacggc acgcttactt cgttggcagc atcctgacca aagtgttctt catcgacgat
     1801 aaaaccgccg ccgatggaat aataagtttt gctgtagacg acttcatcgc cgttataggc
     1861 gtggatttgc ataccgtttt catgcagcgg caggttgccg ttatgaaaac gcatcccgtt
     1921 gtcgcgcggg aaatccactt catgccgtcc ctgtgccagc agcagacgtt cgtgctcttc
     1981 tacgtcgcga ataaaaccgg gaatactgtc gatatccacg gtggcaggtt cgttacctgc
     2041 aagacccata ataatggcga tatcggtgtg gtggccttta cccgtcagcg acagtgaacc
     2101 ataaacgtcc acggcaacgc gagtaacgct atccagtaag cctttttcga ccagatcatc
     2161 gacgaactgt ttacccgcct tcataggccc tacggtatgg gaagatgagg gaccaatccc
     2221 caccttaaac atgtcgaata gactaatcac gataatactc ctgacaaggt gactggactt
     2281 ccagtaacga actaataaca gcgcatagtg taagagggaa cgcggcgact ggcttaacta
     2341 ttcacatgaa ttaaactaat caaaaaccgc gatttaacta atattgcgat gattgtctca
     2401 agtagtgttt tgtagatgta aagataagta tagtcagggt ttcacaccaa tttgcagcgc
     2461 cagctcacga attatgcctg cggtcattcc ccatacaaaa tactgttcgt accaggacag
     2521 ccatacccga tgtgaatcgc cacggcggta gatatctaaa gggtgataac gacccagatg
     2581 taatgcctgg gcgagcggca tttcaaacac cgccgagact tcatcttcac tggcgcgata
     2641 cggcagatcg ggtgggataa tgccgaccac tggggttacc tgatagccag ttacgctatc
     2701 gacgggcggc agcacgccga taacttcaac ggcggaaggc ggtatagcga cctcttcttc
     2761 agcttcgcgc agcgcggcgg cgataactga tgcgtccgtg tcatcgactg cacctccagg
     2821 gaatgccact tgtccagcgt gtttacgcag atgaattgaa cgctgagtca gcaacaaccc
     2881 cggttgcggt cgacggacga tggggattaa cacggcagcc tgacgatgat ttagggtttc
     2941 ccggttaatt tgcgggcgca aaagttgaaa gcgagataaa aaatcatcaa gcgtcaggct
     3001 acggtattcc acgtcttact tctccagttg gcgtaatatc ttagtaactt tatcaaaagt
     3061 ttcctgatat tccgcttctt cctggctatc ggcgacaatt ccaccgcccg cagagcagta
     3121 tatttgtccg ttaatggcag tcagcgtgcg gatagtaatg ctggtatcca tgttgccgca
     3181 aaagctcaaa tagccaatgc tgccgcacca ggcattacgt cgctgcggtt ccagttcgtc
     3241 gataatttcc atagcccgta ctttcggagc cccggttatt gagccaccag gaaaagctgc
     3301 gcgcagcaga tcgctggcgt gtaactgttc tggtagtcgc gccgttatag tgctgaccag
     3361 atgatgcacg gcagggaagg gttccaccac gaagagctct ggtactttta ccgaaccggc
     3421 tacggcaaca cgaccgatat cattacgcat taaatcgaca atcatcagat tttcggcacg
     3481 atctttcgct gagttcgcca gtttttctgc ttgtttgcta tcttcctgag gatcgggcag
     3541 gcgtggtagc gtgcctttaa tcgggcgggt ctggatttca ctattatcac aaagaataaa
     3601 ccgctctggc gaaaggctta aaattgcacc ctgttcaaga cgtaaaaaag cgctaaatgg
     3661 cgcgcggttg gcctgattaa gctgaaggaa tgcctgccat tcatcgccag aataggtcgc
     3721 atgaaaacgc tgggcgagat tcacctgata gcaatcaccg ctgtgcagat attcctgtac
     3781 ctggcgaaat ttttcgccgt actgctcgcg ggtcatattg gattgccagt cggaagtgag
     3841 cgtgaaatct tcctgcggcg agaattgctg gctttccagc caggcccgac gggcattgac
     3901 atcattatga ctcagcaaag aaactgtatg acgctggtgg tcgacaatga gcgcccaatc
     3961 gtagataccc actgccatat ccggcagaac gatatcttgt tccgcaattt ctggcagtga
     4021 ctcaaaacgg cggcccagat cgtagccaaa caaccccagt gcgccgccct gaaatggcaa
     4081 atcttcgtta tgcgttgggc gaatgtctgc gcgatccagc acctgctgga gcacctgtag
     4141 cgggtcatca gtggtcgttg tgcgtttttc gctttcacta acaacggttt ctttaccgaa
     4201 agtggttaaa gtgcaaatcg gctcggcgac cacaatatca aagcggctat acggatgatc
     4261 ggcatagccg gagtgtaaaa gcatcgccca cggcaggtgg cttaagcggg agaaataaaa
     4321 ttcagcggcg tcctgacgcc agggtaaagt aatcacagcg ggagataacg tcttcatcag
     4381 tcctgactct actggctatg tgccgggtag catgaaataa ttagcgccaa caatttagca
     4441 ggagttaaca atgtttgcag gtttaccttc actcacccat gaacagcagc aaaaagctgt
     4501 cgagcggatc caggaactga tggcacaagg gatgagcagc ggccaggcaa tcgcgctggt
     4561 ggcagaagag ctgcgtgcca accactccgg cgagcgaatc gtggcgcgtt ttgaggatga
     4621 agacgagtaa cacactaatc cgtatcgatt tcgttataga agccga
//
LOCUS       DADMHM010000249         4586 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.254, whole genome shotgun sequence.
ACCESSION   DADMHM010000249 DADMHM010000000
VERSION     DADMHM010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4586)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4586)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4586
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.254"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(28..129)
                     /locus_tag="JN125_003829"
                     /pseudo
     CDS             complement(28..129)
                     /locus_tag="JN125_003829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311173.2"
                     /note="with ArnE is responsible for the transport of
                     4-amino-4-deoxy-L-arabinose-phosphoundecaprenol from the
                     cytoplasm to the periplasm; incomplete; partial in the
                     middle of a contig; missing C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="4-amino-4-deoxy-L-arabinose-phospho-UDP
                     flippase"
     gene            complement(129..464)
                     /gene="arnE"
                     /locus_tag="JN125_003830"
     CDS             complement(129..464)
                     /gene="arnE"
                     /locus_tag="JN125_003830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-amino-4-deoxy-L-arabinose-phosphoundecaprenol
                     flippase subunit ArnE"
                     /protein_id="HAY8873432.1"
                     /translation="MIWLTLVFASLLSVAGQLCQKQATCFVAINKRRKHIVLWLGLAL
                     ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIG
                     GIVILGSTV"
     gene            complement(461..2113)
                     /gene="arnT"
                     /locus_tag="JN125_003831"
     CDS             complement(461..2113)
                     /gene="arnT"
                     /locus_tag="JN125_003831"
                     /EC_number="2.4.2.43"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A)
                     4-amino-4-deoxy-L-arabinosyltransferase"
                     /protein_id="HAY8873433.1"
                     /translation="MKSVRYLIGLFAFIACYYLLPISTRLLWQPDETRYAEISREMLA
                     SGDWIVPHLLGLRYFEKPIAGYWINSIGQWLFGANNFGVRAGVIFATLLTAALVTWFT
                     LRLWRDKRLALLATVIYLSLFIVYAIGTYAVLDPFIAFWLVAGMCSFWLAMQAQTWKG
                     KSAGFLLLGITCGMGVMTKGFLALAVPVLSVLPWVATQKRWKDLFIYGWLAVISCVLT
                     VLPWGLAIAQREPDFWHYFFWIEHIQRFALDDAQHRAPFWYYVPVIIAGSLPWLGLLP
                     GALYTGWKNRKHSATVYLLSWTIMPLLFFSVAKGKLPTYILSCFASLAMLMAHYALLA
                     AKNNPLALRINGWINIAFGVTGIIATFVVSPWGPMNTPVWQTFESYKVFCAWSIFSLW
                     AFFGWYTLTNVEKTWSFAALCPLGLALLVGFSIPDRVMEGKHPQFFVEMTQESLQPSR
                     YILTDSVGVAAGLAWSLQRDDIIMYRQTGELKYGLNYPDAKGRFVSGDEFANWLNQHR
                     QEGIITLVLSVDRDEDINSLAIPPADAIDRQERLVLIQYRPK"
     gene            complement(2113..3003)
                     /locus_tag="JN125_003832"
     CDS             complement(2113..3003)
                     /locus_tag="JN125_003832"
                     /EC_number="3.5.1.n3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-deoxy-4-formamido-L-arabinose-
                     phosphoundecaprenol deformylase"
                     /protein_id="HAY8873434.1"
                     /translation="MTKVGLRIDVDTFRGTREGVPRLLEILSKHNIQASIFFSVGPDN
                     MGRHLWRLVKPQFLWKMLRSNAASLYGWDILLAGTAWPGKEIGHANADIIREAAKHHE
                     VGLHAWDHHAWQARSGNWDRQTMIDDIARGLRTLEEIIGQPVTCSAAAGWRADQKVIE
                     AKEAFHLRYNSDCRGAMPFRPLLESGNPGTAQIPVTLPTWDEVIGRDVKTEDFNGWLL
                     NRILRDKGTPVYTIHAEVEGCAYQHNFVDLLKRAAQEGVTFCPLSELLSETLPLGQVV
                     RGNIAGREGWLGCQQIAGSR"
     gene            complement(3000..>4586)
                     /gene="arnA"
                     /locus_tag="JN125_003833"
     CDS             complement(3000..>4586)
                     /gene="arnA"
                     /locus_tag="JN125_003833"
                     /EC_number="1.1.1.305"
                     /EC_number="2.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-4-amino-4-deoxy-L-arabinose
                     formyltransferase/UDP-glucuronic acid oxidase ArnA"
                     /protein_id="HAY8873435.1"
                     /translation="HRMVKRADAGAIVAQLRVAIAPDDIAITLHHKLCHAARQLLEQT
                     LPAIKHGNILEIAQRENEATCFGRRTPDDSFLEWHKPASVLHNMVRAVADPWPSAFSY
                     VGNQKFTVWSSRVHPHASKAQPGSVISIAPLLIACGDGALEIVTGQAGDGITMQGSQL
                     AQTLGLVQGSRLNSQPACTVRRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS
                     DAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFEL
                     DFEENLRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVS
                     KQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSP
                     IKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGKMLL
                     ASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQE
                     TIDETLDFFLRTVDLTDKPS"
BASE COUNT         1180 a         1237 c         1129 g         1040 t
ORIGIN      
        1 gtcaatacgg ttcttgctgc acgcttacca taagtgcgtc atcggcggca gatgacttgc
       61 cgcaaaaccc aggcttaatt gcgcaactga ggcaataatg acgctgaata atccccatat
      121 caggcccatt acaccgtact cccgaggatc acaatgccac caataatgaa cgccacccca
      181 caccagtgac gcggcgatac cggttcgtgc cacagtttta ctgcagccag cgtcacccag
      241 acaaaattca gacttaacat cgggtaggca atgcctaccg gtacgttctg caagaccagc
      301 agccagagca ccatggcaag accaagacaa gccagcgcca gtcccagcca cagcacgata
      361 tgtttgcgcc gtttgtttat cgccacaaag caggttgcct gtttctgaca caactgcccg
      421 gcaacgctaa gcaagctggc aaagactaat gttagccaga tcatttggga cgatactgaa
      481 tcagcaccag acgctcctga cgatcgatgg catctgcggg cggaatggcg agactgttga
      541 tatcttcatc gcggtcaacc gaaagcacga gtgtaataat cccctcctga cgatgttgat
      601 taagccagtt tgcgaactca tcaccgctga caaatctccc tttcgcatcc ggataattaa
      661 ggccgtattt caactcacct gtctggcgat acatgatgat gtcatcgcgt tgtaggctcc
      721 atgccagacc tgcggcaaca ccgacgctat cagtaagaat atagcggctt ggttgaagtg
      781 attcttgtgt catctcgaca aaaaattgcg gatgttttcc ttccatgact ctgtcaggaa
      841 ttgaaaatcc taccagcaac gccagcccca gcgggcaaag cgcggcgaaa gaccaggtct
      901 tttcgacgtt tgttaaggtg taccagccga aaaatgccca tagcgaaaaa atcgaccagg
      961 cacaaaagac tttatagctc tcgaaggttt gccacaccgg cgtgttcatt ggtccccacg
     1021 gggagaccac aaatgtggca ataatgccag tgacgccaaa agcgatgtta atccagccat
     1081 taatccgcag cgccagagga ttattttttg ctgccagcaa agcgtaatgc gccatcagca
     1141 ttgccagaga tgcaaagcag gaaagaatat aggtgggcaa tttaccttta gcgacggaga
     1201 aaaacagcag cggcattatc gtccagctca acaaatagac ggttgcggaa tgcttgcggt
     1261 ttttccagcc tgtgtacagt gcaccgggga gtaatcccag ccacggcagg ctaccggcaa
     1321 tgatgaccgg cacgtagtac cagaacggag ctctatgttg ggcatcatcc agtgcaaagc
     1381 gttgaatatg ctcaatccag aaaaaatagt gccagaagtc aggctcccgc tgcgctatcg
     1441 ccagtcccca agggagaacc gtcagtacgc aactgataac cgccagccag ccgtaaataa
     1501 agagatcttt ccagcgtttt tgcgtcgcta cccatggcag cacgcttaat accggcacgg
     1561 caagggcgag aaaacctttg gtcatcaccc ccatgccgca ggtgattccc agcagtaaaa
     1621 atcctgcgct tttgcctttc cacgtctgtg cctgcattgc cagccagaag ctgcacattc
     1681 ccgccaccag ccagaatgca ataaacggat cgagcacggc ataagtgccg atggcataga
     1741 caataaacaa tgagagataa attactgtgg cgagtagagc cagacgttta tcgcgccata
     1801 agcgcagagt aaaccaggtc accagcgcgg cagttaacag ggtcgcaaag ataacgcctg
     1861 cccgcacacc aaagttattc gcgccaaata gccattgccc aatgctgtta atccagtatc
     1921 cggcaatggg tttttcgaaa taacgtagcc ctaacagatg gggcacaatc cagtcgccgg
     1981 atgccagcat ttctcgactg atttccgcat aacgcgtttc atcgggttgc cagagcagac
     2041 gcgtgctgat cggtaacagg taatagcagg caataaacgc gaagaggccg ataaggtaac
     2101 gtaccgattt catcagcgac tacccgcaat ttgttggcaa cccagccagc cttcacgtcc
     2161 ggcaatattt ccgcgaacaa cttgtccgag cggcaacgtc tctgataaca gttcgcttaa
     2221 agggcaaaat gtcacgcctt cctgagctgc gcgtttgagg agatccacaa aattatgctg
     2281 ataagcgcag ccttcaactt ctgcatgaat ggtataaacc ggcgtgcctt tatctcgcag
     2341 gatgcggttg agtaaccaac cgttaaaatc ttctgttttc acatcccgac caatcacttc
     2401 atcccaggtg ggtaaggtca ccggaatttg cgcagtgcca gggtttcctg attcgagcaa
     2461 tggacggaac ggcatggccc cacgacaatc gctgttgtag cgcaaatgga acgcttcttt
     2521 tgcttcgatc accttctggt cggcacgcca gcccgcagcg gcagaacagg ttaccggttg
     2581 accgataatc tcttccagag tgcgaagacc gcgtgcaata tcgtcgatca ttgtttgccg
     2641 atcccagtta ccgctacggg cttgccaggc atggtgatcc caggcgtgca ggccgacttc
     2701 gtgatgttta gccgcttcac gaatgatatc ggcattggca tgaccaatct ctttacctgg
     2761 ccaggccgta cctgccagta aaatatccca gccataaagc gatgccgcgt ttgagcgcag
     2821 catcttccac aaaaactgtg gcttcaccag tcgccagaga tggcggccca tattgtccgg
     2881 gccgacgctg aaaaaaatgc tggcctgaat attatgctta ctcaagattt ccagcagacg
     2941 cggcacgcct tcacgggtgc cacgaaaggt atcgacatca atgcgtaagc ctactttggt
     3001 catgatggtt tatccgtaag atcaacggtg cgcaggaaga aatccagcgt ttcgtcgatg
     3061 gtttcctgca tatcaatttt cggctcccag tccaggcagc ggtgggcatt gcggatgctc
     3121 ggtttacgat gctctacgtc ctgatatcct ttgccgtagt agctgctact ttcgacaacg
     3181 cgaaagcccg caaacggtgg gaaatgatgg cgcagcggat gtttttcgaa gctcgccagc
     3241 agcatcttgc ccagttcctc aatgctcgct tcgttctcag gattgccaat gttgataatt
     3301 tcaccgtcgc agcgatttcc cgcattttcg ataatgcggt ataacgcctc gataccatcg
     3361 cgaatatcag taaagcagcg tttttgtttt ccgccatcaa tcagcttaat cggtgaacct
     3421 tctaccagat tgagaatgag ttgcgtaata gcgcgggagc tgccgattcg tgccgcatta
     3481 aggttatcca gtcgtggtcc catccagtta aacgggcgga agagggtgaa ctgtaaaccc
     3541 tctttttcgc cataggccca gatcacccga tcaagtaatt gttttgatac cgaataaatc
     3601 cagcgtggtt tattcaccgg gccgacgatt aaattagaat ggtcctcatc gaagtattta
     3661 tcgctacaca tcccataaac ttctgaagtt gacgggaaga tgattcgctt acggtacttc
     3721 acgcagtagc ggataatgcg cagattctct tcaaaatcga gttcaaatac gcgcagcggg
     3781 ttgcgggtat attcaatcgg cgtggctatc gccaccagcg gcaagacgac atcacatttt
     3841 ttgacatgat actcaatcca ttcggaatga atactgatat cgccttcaac aaagtgaaaa
     3901 tgcggatgat tcagaaaacg gcttatcgca tcgctgccaa tatccagacc gtaaacttca
     3961 taatgatctt cgcgcagcag gcgttctgtc agatggttgc caataaagcc attcaccccg
     4021 aggatgagta cccgggtacg gcgtcggacg gtgcaggcag gctggctatt caagcgtgaa
     4081 ccttgcacca ggcccagcgt ctgcgctaat tgcgagccct gcatagtaat gccgtcgccc
     4141 gcctgtccgg tgacgatttc cagcgcgcca tcgccacagg caatcaacag cggtgcaata
     4201 gaaatcacgc tccccggctg tgctttgctg gcatgaggat gaacacgcga cgaccagaca
     4261 gtgaatttct gattgccaac atagctgaag gcactcggcc acggatcggc aacggcacgt
     4321 accatgttgt gcagtacgga tgccggttta tgccattcaa ggaaactgtc atccggcgtt
     4381 ctgcgaccaa aacaggtggc ttcgttttcg cgctgggcga tttccagaat attaccgtgt
     4441 ttaatggcgg gtaatgtctg ttccagtagc tggcgcgcgg catggcacaa tttatgatgc
     4501 agcgtaatag cgatatcgtc tggcgcaatg gcaacgcgca gttgcgccac aatggcccca
     4561 gcatcggcac gttttaccat tcggtg
//
LOCUS       DADMHM010000250         4511 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.255, whole genome shotgun sequence.
ACCESSION   DADMHM010000250 DADMHM010000000
VERSION     DADMHM010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4511)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4511)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4511
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.255"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            80..351
                     /locus_tag="JN125_003834"
                     /pseudo
     CDS             80..351
                     /locus_tag="JN125_003834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313033.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3811 domain-containing protein"
     gene            complement(484..1356)
                     /gene="rluF"
                     /locus_tag="JN125_003835"
     CDS             complement(484..1356)
                     /gene="rluF"
                     /locus_tag="JN125_003835"
                     /EC_number="5.4.99.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA pseudouridine(2604) synthase RluF"
                     /protein_id="HAY8873436.1"
                     /translation="MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD
                     QVKPGDIVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFP
                     IGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPIL
                     GTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPL
                     GEWRDLTDDELIDLFKLIENSSSEAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASN
                     GKRFTSPGRKKKGR"
     gene            1704..2651
                     /locus_tag="JN125_003836"
     CDS             1704..2651
                     /locus_tag="JN125_003836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709812.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding transcriptional regulator"
                     /protein_id="HAY8873437.1"
                     /translation="MENSDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKR
                     GRDQGIVTIAINYDYNENLWLEQQLKQKFGLKDVVVVSGNDEDEETQLAMMGLHGAQL
                     LDRLLEPGDIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGGPSGKLESRYHVNTLT
                     YSAAAKLKGESHLADFPALLDNPLIRNGIMQSQHFKTISAYWDNLDVALVGIGSPAIR
                     DGANWHAFYGGEESDDLNARQVAGDICSRFFDIHGAMVETNMSEKTLSIEMNKLKQAR
                     YSIGIAMSEEKYSGIVGALRGKYINCLVTNSSTAELLLK"
     gene            2721..3527
                     /locus_tag="JN125_003837"
     CDS             2721..3527
                     /locus_tag="JN125_003837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HAY8873438.1"
                     /translation="MQTWLNLQDKIIIVTGGASGIGLAIVEELLAQGANVQMVDIHGG
                     DGQYEGHKGYQFWPTDISSAKEVNHTVAEIIQRFGRIDGLVNNAGVNFPRLLVDEKAP
                     AGQYELNEAAFEKMVNINQKGVFLMSQAVARQMVKQHDGVIVNVSSESGLEGSEGQSC
                     YAATKAALNSFTRSWSKELGKHGIRVVGIAPGILEKTGLRTPEYEEALAWTRNITVEQ
                     LREGYTKNAIPIGRAGRLAEVADFVCYLLSERASYITGVTTNIAGGKTRG"
     gene            3537..3944
                     /locus_tag="JN125_003838"
     CDS             3537..3944
                     /locus_tag="JN125_003838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sorbose transporter subunit IIA"
                     /protein_id="HAY8873439.1"
                     /translation="MVNAIFCAHVKLACAMLESVQMVYGDARVEAVEFVPGENAGDIV
                     AKLGRLVSIHNQDEWLIAVDLQCGSPWNAAAMLAMRNPRLRVISGLSLPLALELVDNQ
                     DSMNVDEVCEHLTQIAKQTCVVWKQLATAEEDF"
     gene            3944..4438
                     /locus_tag="JN125_003839"
     CDS             3944..4438
                     /locus_tag="JN125_003839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system
                     mannose/fructose/N-acetylgalactosamine-transporter subunit
                     IIB"
                     /protein_id="HAY8873440.1"
                     /translation="MNITLARIDDRLIHGQVTTVWSKVANAQRIIICNDEVYNDEVRR
                     TLLRQAAPPGMKVNVVNIEKAVAVYHNPQYQDETVFYLFTRPQDALAMVHQGVKIDTL
                     NIGGMVWRPGKKQLTKAVSLDDDDINAFHELNNLGVILDLRVVASDPSINIIDKINEQ
                     LIAN"
BASE COUNT         1203 a         1068 c         1160 g         1080 t
ORIGIN      
        1 aggcaaaatg aatattatca gttctgctcg caaacgaatt cccgtacact gaactctctg
       61 gctcactgag ggcaccatca tggcactccc ccgtattacc caaaaagaga tgactgaacg
      121 cgagcagcgt gaacttaaaa cactgctgga tcgggcgcgg attgcgcatg gtcgcgtact
      181 gaccaactcc gaaaccaaca gcattaagaa agagtacatc gataaattaa tggtcgagcg
      241 tgaggctgaa gcgaaaaagc ccgccaattg aagaaaaagc aggcttataa accggatcct
      301 gaagcgtcat ttagctggtc agcaaatacg tcgacgcgcg gcaggcgcta atgaacaatc
      361 aacgcctgag attttcactc gtctgtgtgg acacaatctt cccctcaccc taaccctctc
      421 cccgaagggg cgaggggact gtccgagctc tttttggacg ttttcatcag tctgaggcgt
      481 taatcagcgt cccttctttt tacgccccgg cgaggtaaaa cgcttaccgt tggacgccgg
      541 gcgaccgcct ttttccgccg ttttttccat cttaacgact ggacgtttga tgcccgctgt
      601 tttcggtttg gccttcgctt taggttttgc ctcggaagag gaattttcga tgagcttaaa
      661 gaggtcgatt aactcatcgt cggttaaatc gcgccactcc cccagcggaa tgccgcttaa
      721 gctgacgttc ataatgcgcg tacgttccag ctttttcact tcatagccga aatgctcgca
      781 catgcgccgg atctgacggt tcagcccctg caccagggta atgcggaaga caaacggcgc
      841 ttcttttttg actttgcact ttttcgtcac cgtcccgagg atcggcaccc ccgcccccat
      901 accacgaata aattcatcgg taatcggttt atcgaccgtc accagatact ctttctcatg
      961 atcgttaccc gcacggagga tcttattcac cagatcgccg tgattggtga ggaaaatcag
     1021 cccctgggag tctttatcca ggcggccaat cgggaacacg cgtttgctgt ggttaacgaa
     1081 atcgacaatg ttatcgcgct cgccatcttc ggtggtgctg acaataccga cgggcttgtt
     1141 cagggcgata agtaccaaat cttcggcttc ccgaggctca atcaactgac cgtttacttt
     1201 cacaatgtcg ccgggtttca cctgatcgcc aatggtggct cgcttgccat taaggaacac
     1261 attgccttgc tcgatatagc gatccgcttc gcggcgtgag caaattccgc tttcgctgat
     1321 gtatttattt aaacggactg atgagtcggg cagcataaat tctcctgtaa aacgcggaat
     1381 ataccgtacc tcttagcggg gaaaaacagg gttatgcggc aacgtcgaaa ttaaatgtga
     1441 tctgccacgc cttttatcac aaaagtgtct ccggaagtac gatgcaaatt tgcctggcaa
     1501 aataaggata atcaacatat tacgaatcgc tgcacacctg tgctgatgac tactacgcag
     1561 agaaacaaat gtgcaagaga aagcgctata tctccccatg caaagagtga aaaatcgctt
     1621 tgaaaggccc tcatgatggg gttatatcag atcaagcggt gagaaagcgt atttgcacaa
     1681 atgtgcagaa ccaggaggcg gcaatggaaa acagtgacga tatccgtttg attgtgaaga
     1741 ttgcccaact ctattacgaa caggatatga cgcaggcgca aatcgcgcgc gaactgggta
     1801 tttaccgcac caccatcagc cgcttgctta aacgaggccg cgatcaggga attgtcacca
     1861 tcgccatcaa ctatgactac aacgaaaatc tctggctgga gcagcaactg aagcaaaagt
     1921 ttggcctgaa agacgttgtg gtggtgtcgg gaaatgatga ggatgaagag actcaactgg
     1981 cgatgatggg gttacacggc gcgcaactgc tggatcgctt gctggagcct ggcgatattg
     2041 tcggtttttc ctggggtcgc gcggtgagcg cactggttga aaacttgccg caggcggggc
     2101 aatcgcggca gttaatctgc gtaccaatta ttggcggacc gtccggtaaa ctcgaaagcc
     2161 gctatcatgt aaacacatta acctacagcg cggcagcgaa gctgaaaggg gaatcgcatc
     2221 tcgcggattt tccggctctg ctggataacc cattaattcg taatgggatc atgcagtctc
     2281 agcactttaa aaccatctct gcctactggg ataatctgga tgtcgccctg gtgggaattg
     2341 gctcaccggc cattcgcgac ggcgctaact ggcatgcgtt ttatggtggt gaagagagtg
     2401 acgacctgaa tgcccgccag gttgctggcg atatttgctc gcgctttttt gatattcacg
     2461 gcgcaatggt tgaaacgaat atgagcgaaa aaacactctc tatcgaaatg aataaattaa
     2521 agcaagcacg atattccatt ggcattgcca tgagtgaaga aaaatacagc ggaattgttg
     2581 gtgcactgcg tggaaaatat attaattgtc tggtaacgaa tagcagcaca gctgaactat
     2641 tactgaaata aaaatcttcc cgatgtttag cgtaataaaa attacggcgg ggccctatta
     2701 tctaaaatca ggagtctgtt atgcaaacgt ggttaaattt gcaggataaa atcattattg
     2761 tcaccggcgg cgcatccggt attggtctgg cgattgtaga ggaattatta gcacaaggcg
     2821 caaacgtaca gatggtagat attcacggtg gcgatggtca atatgaaggt cataaaggct
     2881 atcagttttg gccgaccgat atttccagcg ccaaagaggt aaatcatacg gtagcggaaa
     2941 ttatccagcg ttttggtcgc atcgacggtc tggtcaataa cgccggggtc aatttcccgc
     3001 gtctgctggt cgatgagaaa gcgcctgccg ggcagtatga actcaacgaa gctgcattcg
     3061 aaaaaatggt caatatcaac cagaaaggcg tttttctgat gtcgcaggcg gtggcgcgac
     3121 agatggtcaa acaacatgat ggcgtgattg tgaatgtttc ctcagaaagt ggactggaag
     3181 gctcagaagg ccaaagctgt tacgccgcta ccaaagccgc gcttaatagc ttcacgcgat
     3241 cctggtcgaa agaattgggt aaacacggta tccgtgtggt cggtatcgcg ccggggattc
     3301 tggaaaaaac aggactgcgc acgccggaat atgaagaagc gctggcgtgg acgcgcaata
     3361 tcaccgtcga gcagctgcgt gaaggctata ccaaaaacgc cattcctatt gggcgcgccg
     3421 gaagattagc agaagtcgct gattttgttt gttatctgct gtctgaacgc gccagctata
     3481 tcaccggagt aaccactaac attgcgggcg gcaaaacgcg cggctaagga ggctttatgg
     3541 tcaatgccat tttttgcgcc cacgtcaaat tagcttgcgc catgctggaa tcggttcaga
     3601 tggtgtacgg cgacgccagg gtcgaggcag ttgaatttgt gcccggcgag aacgccggag
     3661 acatcgtagc aaagctggga aggttagtaa gcattcacaa tcaagatgag tggctgattg
     3721 ccgtggattt acagtgcggc agcccgtgga atgcggcagc gatgcttgcg atgcgcaatc
     3781 ctcgtctgcg ggtaatcagc ggcctttctc tgccgctggc gctcgaactg gttgataacc
     3841 aggacagcat gaatgttgat gaagtgtgtg aacacctgac gcaaatcgca aagcaaacct
     3901 gcgttgtctg gaaacaactg gcaacggcag aggaggattt ctgatgaaca ttacgctcgc
     3961 ccgcattgat gaccgcctga tccacggtca ggtcactacc gtctggtcga aagtggctaa
     4021 cgcccagcgc attattatct gcaatgacga agtttataac gatgaagttc gccggacatt
     4081 attgcgtcag gctgcgccac cgggaatgaa ggttaacgtg gtcaatattg aaaaagccgt
     4141 cgctgtttat cacaacccgc aatatcagga cgaaaccgtt ttttatcttt tcactcgccc
     4201 acaggatgcc ttagcgatgg ttcaccaagg ggtaaaaata gacaccctaa atattggcgg
     4261 catggtctgg cggcccggta aaaaacagtt aaccaaagcg gtttcattag atgatgatga
     4321 tattaacgca tttcatgagt taaataatct tggcgtcata ctggatttac gcgtcgtagc
     4381 gtcagatccc tcaatcaata ttatcgacaa aataaacgaa cagttaatcg caaattaaat
     4441 aatagcgctt gtgtacatat gctttaacag gcagggatga cgacacttaa aaggtgaaaa
     4501 atcatggaaa t
//
LOCUS       DADMHM010000251         4478 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.256, whole genome shotgun sequence.
ACCESSION   DADMHM010000251 DADMHM010000000
VERSION     DADMHM010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4478)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4478)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4478
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.256"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            141..4185
                     /locus_tag="JN125_003840"
                     /pseudo
     CDS             141..4185
                     /locus_tag="JN125_003840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312497.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat protein"
     gene            4188..>4478
                     /locus_tag="JN125_003841"
     CDS             4188..>4478
                     /locus_tag="JN125_003841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001268525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HAY8873441.1"
                     /translation="MRYFLFIFITIPLISGGHMSNDSEKIISTYSLNFLSPDDVRKEE
                     LKASQGDSDAAFKLYKYYLFCEPKSYRKQHEWLIISANNGNAIAQYNLSRELE"
BASE COUNT         1171 a         1139 c         1321 g          847 t
ORIGIN      
        1 cagtaagttg gagtcattac cgatatcagt caaaaaaata atacaaaaag agagtatttc
       61 gtttcataca gtaacgttat ttatcatttt gtccggtgcc gccagcatca ggccagatga
      121 accataaaag gatatcagcg atgagcggaa aaccagcggc acgtcagggc gatgccacaa
      181 tgaaaggtgg cccgatagtc caggggtcgg caggcgtgag aattggtgcg ccaaccggcg
      241 tggcctgctc agtgtgcccc ggcggattca cttccggcaa cccggtgaat ccgctgctcg
      301 gtgcaaaagt acagcccggc gaaaccgatt tcgcgctgcc cggcccgtta ccgttcgtgc
      361 tctcccgcac ctacagcagc taccggacga aaacccctgc gcccgtcggt atcttcggtc
      421 ctggctggaa agcacccttt gatatccgct tacagatacg cgataacgaa ctgatactca
      481 atgataacgg tggcagaagc attcattttg agcacctgtt tcccggtgag gatggtttca
      541 gccgcagcga attattctgg ctggtacgcg gcggcgtggc gaaactgaat gaaagtcacc
      601 gtcttgcccc actctggcag gctctgccgg aagaactccg cctgagtccg catatttatc
      661 tggcgacgaa cagtccgcag gggccgtggt gggtactcgg ctggagtgag cgggtgccgg
      721 gggggggatg aggtgctgcc tgccccattg ccgccgtacc gggtgctgac cggcctggtg
      781 gaccgcttcg ggcgcacgca aaccttccac cgtgaggccg caggcgaatt taccggagaa
      841 atcaccggcg tgaccgatgg ggcaggccgt cagttctgcc tggtgctgac cacgcaggcg
      901 caacgggcag aaaacgcccg gcagcaggcc atcgccgcag gaacgaaagg atcggatatc
      961 ccggattcac tgccggacta tacggagtat ggccgggata acggtatccg cctgtcaggg
     1021 gtgtggctga cgcacgaccc ggaatacccg gagaatctgc ccgccgcccc cctggtacgc
     1081 tacgactgga cggcacgcgg tgagctggcg gcggtgtatg accgcagcgg tactcagatg
     1141 cgccacttta cttacgatga taaataccgg ggccggatgg tggcgcaccg ttacgcaggc
     1201 aggcgggagg tgctgcacac ggaaggtgaa gccgggctga aacgtgtggt gaaaaaggaa
     1261 ttcgcggatg gcagcatcac ccgaagtaaa tttgactata tggggcgact ccagtcacag
     1321 acggatgcag caggccggac aacagaatac agtccgaatg tggtgacggg actcgtcacg
     1381 tgcatcacca cgccggacgg caggaaatcg gaattttact ataacaatca aaaccagtta
     1441 acctcagcca ccgggcctga cggactggaa atacgccgga aatatgatga gtacgggcgt
     1501 ctgacgcagg aaacagcacg caacggcgat gtcacccgct acagttatga taatccacac
     1561 agtgaattac cctctgtaac agaagatgcg acgggtagcc gcaagcagat gacgtggagc
     1621 cgctacgggc agttacagac cttcaccgac tgctcaggct atgaaacccg ttatgaatat
     1681 gaccgcttcg ggcaaatgac ggcggttcac cgtgaggaaa gcatcagcct ttaccgcagt
     1741 tacgacaacc gtggccagtt aatctcggtg aaagatacgc agggccgtga aacgcagtat
     1801 gagtacaacg ccgcaggcga cccgaccgcc atcattgccc cggacggcaa ccggagtgag
     1861 acacagtacg atgcgtgggg aaaggccgtc agcaccgcac agggtgggct gacgcgcagc
     1921 atggaatacg atgcagcggg acgtgtcatc agcctgacca acgagaacgg cagccataca
     1981 gaatttagct gggatgtgct tgacctcctg atacagcagc gcggctttga cgggcggacg
     2041 cagcgttacc gttatgacct gaccgggaaa ctcacgcaga gcgaggatga ggggcttatc
     2101 accctctggc actacgatgc atcggaccgt atcacacacc gcacggtgaa cggcgaaccg
     2161 gcagagcagt ggcggtataa cgaccacggc tggctgacag aaatcagcca tctcagcgaa
     2221 ggccaccggg tggcggtgca ttacggttat aaccgtaagg gacgtctcac aggcgagcgc
     2281 cagacggtac atcacccgga gacgggggaa ctgctctggc agcatgagac gcaacacact
     2341 tacaacgagc aggggctggc aaaccgcttt caggcagaca gcctgccacc ggtggagtgg
     2401 ctaacgtatg gcagcggtta cctggcggga atgaaactgg gcgacacgcc gctggtggag
     2461 tacacacggg atagactgca ccgggaaacg gtgcgcagct tcggcaataa tgcatatgaa
     2521 ctgaccagca cttacacccc cgcaggccgg ttacagagtc agcacctgaa cagcctggtg
     2581 tatgaccgtg actatggctg gaatgacaat ggcgacctgg tgcgcatcag cggcccgtgg
     2641 cagtcgcggg aatacggcta cagtgccacg ggcaggctgg agagtgtgcg cacccttgca
     2701 tcagacctgg atatccgcat cccgtatgcc tccgacccgg cgggaaaccg cctgccggac
     2761 ccggagctgc acccggacag tacactcacg gcgtggccgg ataaccgaat caccgaagac
     2821 gcgtactacc tgtaccgcta tgacaggtat ggcaggctga cggagaagac ggaccgcatc
     2881 ccgacgggtg tgatacggac ggacgacgag cggacccacc actaccacta cgacagccag
     2941 caccggctgg tgttttatac gcggatacag catgaggagc cactggtcga gagccgctat
     3001 ctctacgacc cgctgggccg ccggacgggg aaacgggtgt ggcgttgcga gcgtgacctg
     3061 acgggatgga tgtcgctgtc gcgtaaaccg gaggtgacgt ggtacggctg ggacagcgac
     3121 cggctgacga cggtacagac cgataccaag cgtatccaga cggtatacca gccggggagc
     3181 ttcacgccgc tcatccgtat cgaaacagag aatggtgagc tgcagaaagc gcagcgccgc
     3241 agcctggcgg agaagttgca gcaggaagga agcgaggacg gccacggtgt ggtgttcccg
     3301 gcagaacttg tgaggatgct ggacaggctg gagggggaaa tccgggcaga ccgcgtgagc
     3361 agtgaaagcc gccagtggct ggcacagtgc gggctgacgg tggagcggct ggcggcacag
     3421 atagagccgg tttatttacc tgagcgaaaa attcatcttt atcactgtga ccaccggggg
     3481 ctgccgctgg cgctcatcag taccgaagga gcaacggaat ggcgtgggga gtatgacgag
     3541 tgggggaatc agcttaatga ggagaacccg catcatctgt tccagccata ccgcctgccg
     3601 gggcagcagt acgatgatga atcggggctg tgctataatc gttatcgtta ctacgagccg
     3661 ttacagggga ggtatattac acaggacccg attgggttaa atggggggtg gaatttatat
     3721 aaatatccgc tgaatccaat aaattatgca gatcctcttg gcttagccgt agatataaac
     3781 cacttcccag ttaacgaaga catacgaaat tatgcagaga aagtttggaa taatcctaat
     3841 atcattacaa ttggaacaca tggtgatcct caatcagtat atgatgaaaa ttataataag
     3901 atagatgtca agacattagc taatgaggtt cgaaatcatc ctaaatttaa acatggaatg
     3961 tcagtaagac tgttatcctg taatacagga aaaggaaata actcttatgc acagcaattg
     4021 gcagatgaac taggtgtgag agtctatgct cctgaccaat atgactggta ctattcaaat
     4081 ggtaaggtag agccttgggg aggattctat gatgcaaaca atcaattgca aatggacacg
     4141 aatcagcctg gacatgagtt tacattcaag cgaaggaaac cataggtatg aggtattttc
     4201 tctttatatt tataacaatc ccccttatct ctggaggtca tatgagtaat gatagcgaaa
     4261 agataatatc aacatattcg ctcaattttt tatcaccaga tgatgtgagg aaagaagaac
     4321 ttaaggcatc acaaggtgat agtgatgctg catttaaatt atacaaatat tacctttttt
     4381 gcgagccaaa atcatacaga aaacagcacg aatggttaat aatatcggca aataatggaa
     4441 atgctatagc tcaatataac ttatcaagag aacttgag
//
LOCUS       DADMHM010000252         4376 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.257, whole genome shotgun sequence.
ACCESSION   DADMHM010000252 DADMHM010000000
VERSION     DADMHM010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4376)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4376)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4376
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.257"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(4..324)
                     /gene="chbB"
                     /locus_tag="JN125_003842"
     CDS             complement(4..324)
                     /gene="chbB"
                     /locus_tag="JN125_003842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N,N'-diacetylchitobiose transporter subunit
                     IIB"
                     /protein_id="HAY8873442.1"
                     /translation="MEKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLA
                     GEKGLNADVVLLGPQIAYMLPEIQRLLPNKPVEVIDSLLYGKVDGLGVLKAAVAAIKK
                     AAAN"
     gene            complement(622..960)
                     /gene="osmE"
                     /locus_tag="JN125_003843"
     CDS             complement(622..960)
                     /gene="osmE"
                     /locus_tag="JN125_003843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmotically-inducible lipoprotein OsmE"
                     /protein_id="HAY8873443.1"
                     /translation="MNKNMAGILSAAAVLTMLAGCTAYDRTKDQFVQPVVKDVKKGMS
                     RAQVAQIAGKPSSEVSMIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCA
                     EYDTDPQAAK"
     gene            1162..1989
                     /gene="nadE"
                     /locus_tag="JN125_003844"
     CDS             1162..1989
                     /gene="nadE"
                     /locus_tag="JN125_003844"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-dependent NAD(+) synthetase"
                     /protein_id="HAY8873444.1"
                     /translation="MTLQQQIIKALGSKPQINAEEEIRRSVDFLKSYLQTYPFIKSLV
                     LGISGGQDSTLAGKLCQMAINELRQETGNESLQFIAVRLPYGVQADEQDCQDAIAFIQ
                     PDRVLTVNIKGAVLASEQALREADIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGT
                     DHAAEAITGFFTKYGDGGTDINPLYRLNKRQGKQLLAALACPEHLYKKAPTADLEDDR
                     PSLPDEVALGVTYDNIDDYLEGKNVPQQVARTIENWYLKTEHKRRPPITVFDDFWKK"
     gene            2219..3106
                     /gene="cho"
                     /locus_tag="JN125_003845"
     CDS             2219..3106
                     /gene="cho"
                     /locus_tag="JN125_003845"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease Cho"
                     /protein_id="HAY8873445.1"
                     /translation="MVRRLTSPRLEFEAAAIYEYPEHLRSFLNDLPTRPGVYLFHGES
                     DTMPLYIGKSVNIRSRVLSHLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQ
                     QPLFNKRLRRNRQLCALQLNEKRVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTIA
                     DEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCW
                     PWQGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEDATTLIRTPAGFDHDGYKILCKPL
                     LSGNYEITELDPANDQRAS"
     gene            complement(3066..3641)
                     /gene="ves"
                     /locus_tag="JN125_003846"
     CDS             complement(3066..3641)
                     /gene="ves"
                     /locus_tag="JN125_003846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416256.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="environmental stress-induced protein Ves"
                     /protein_id="HAY8873446.1"
                     /translation="MEYFDMRKMSVNLWRNAAGETREICTFPPAKRDFYWRASIASIA
                     ANGEFSLFPGMERIVTLLEGGEMLLESADRFNHTLKPLQPFAFAADQVVKAKLTEGQM
                     SMDFNIMTRLDVCKAKVRIAERTFTTFGSRGGVVFVINGAWQLGDKLLTTDQGACWFD
                     GRHTLRLLQPQGKLLFSEINWLAGHSPDQVQ"
     gene            complement(3844..4314)
                     /gene="spy"
                     /locus_tag="JN125_003847"
     CDS             complement(3844..4314)
                     /gene="spy"
                     /locus_tag="JN125_003847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-independent periplasmic protein-refolding
                     chaperone"
                     /protein_id="HAY8873447.1"
                     /translation="MRKLTALFVASTLALGAANLAHAAAPADAKQMMHHKGKFGPHQD
                     MMFKDLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDIIVSDTFDKAKAEAQIAK
                     MEEQRKANMLAHMETQNKIYNILTPEQKKQFNANFEKRLTERPAAKGKMPATAE"
BASE COUNT         1067 a         1087 c         1052 g         1170 t
ORIGIN      
        1 aaattaattt gctgcggctt ttttaatcgc tgcaaccgca gccttaagca cgcctaaacc
       61 atcgactttg ccataaagca gcgagtcaat tacttcaacc ggtttgttgg gtaacaaacg
      121 ctggatttcg ggcaacatat aagcaatctg cggccctaat aacacgacat cggcattcag
      181 acctttttca ccagccagtg tttccggaaa tgcttcaata atgaccggaa cttcatattt
      241 ttctgcctgt gcgcgcattt ttgataccag taaagaggta gacatgcccg cagaacaaaa
      301 cagataaatg tgtttctttt ccataaaact gccctcatcg acgattatct gtcagccaga
      361 cactccgcaa gccttaacct gcttccatgc tctgggtaac ttgcgaaacc aacatgactt
      421 tttttgtggc tgaaaggagt atacggtata gacctgagca atagtatttc tttgacctta
      481 taaattgtct ctccttgacc tgcggttatg accctcttca catttcgggc aaataattcg
      541 cgaagataat taagaactca ggccaaaaaa accggcgcaa tggccggttt ccgttgttac
      601 tcaagctttc aaacgaagtg attacttcgc agcctgtgga tcagtgtcgt attcagcaca
      661 ggtctgataa ccggagttga tgacatgtcc ggtatcatct aacgcgacaa agtaggtttc
      721 tgctttacca tcacgttgac ccaggatgta ggtctggcaa gtaccacgag catggatcat
      781 gctcacttca gacgaaggtt tacccgcaat ttgtgcaacc tgcgcccggc tcatgccttt
      841 tttgacgtct ttcaccacag gctgtacaaa ctggtctttg gtacgatcat aagccgtaca
      901 acccgccagc atggttaata ccgccgctgc actcagaatt cctgccatat tcttgttcat
      961 attccgtcct cttgtttatc agcgtgttag ataagcctgg aatacattgg gcgctttttc
     1021 aagcccgtga acgaaacggc tccgctttca gaggattcct gtatgacgtt ttatccacca
     1081 ttcaacccgc tgtcgcttgt cgtttcagta gcgacgggtt agctttaagg aagttttgtc
     1141 ttttctgtct ggaggggttc aatgacattg caacaacaaa taataaaggc gctgggctca
     1201 aaaccgcaga ttaatgctga agaggaaatt cgtcgtagtg tcgattttct gaaaagctac
     1261 ctgcaaactt atccgttcat taaatcactg gtgctcggga tcagcggcgg tcaggactcc
     1321 acgcttgccg gtaagctgtg ccagatggcg attaatgagc tgcgccagga gaccggcaac
     1381 gaatcactgc aatttattgc cgtacgcctg ccctatggtg ttcaggccga cgaacaagat
     1441 tgccaggatg ccattgcctt tattcaaccg gatcgcgtat taaccgttaa tatcaagggc
     1501 gcggtattgg ccagcgaaca ggcgctgcgc gaagcggaca ttgaactgag cgattttgtc
     1561 cgtggcaatg aaaaagcgcg tgagcggatg aaagcacaat atagcattgc gggtatgacc
     1621 agcggtgtcg tggtgggcac cgatcatgca gcagaagcta ttaccggatt cttcactaaa
     1681 tatggtgacg gcggtacgga cattaatccg ctgtatcgtc tcaacaaacg tcagggtaaa
     1741 cagttactgg cggcattagc ttgcccggaa cacctttata agaaagcgcc aacggccgat
     1801 ctggaagatg atcgcccttc tctgccagat gaagtggctc tcggcgtgac ctatgacaat
     1861 atcgacgact atctggaagg gaaaaacgta cctcaacagg tcgccagaac aatagagaac
     1921 tggtatctga aaaccgaaca taaacgccgt ccgccaatta ccgttttcga tgatttctgg
     1981 aaaaagtaat aatttgcaca tattggattg tgcgaaaaag agtaatttgt tcacgccgga
     2041 tgcggcgtga acgccttatt cgacctataa aactatgcaa attcaataca ttgcaggagt
     2101 cgaataggcc tgacaggcgt agcacgtcag acggtgtaac ctttgtcatc gacccgcctc
     2161 ttttttaatc gcttcccgcc tgttacactg gatagataac cagcattcgg agtcaacagt
     2221 ggtacggcgt ttaacttctc cgcggctcga atttgaagct gcggcaattt atgaatatcc
     2281 cgaacattta cgttcattcc ttaatgactt acccacccga ccaggggtgt atctgtttca
     2341 tggtgaaagt gacaccatgc cgctctatat cggcaaaagc gttaacatcc gcagccgcgt
     2401 cctttctcat ttacgtaccc cggatgaagc cgccatgcta cggcaatccc gacggatcag
     2461 ctggatatgt accgccggtg aaatcggcgc tctgctcctt gaagcgcgat taatcaaaga
     2521 acaacagccg ctgtttaata aacggttgcg ccgcaatcgc cagctctgtg ccctgcaatt
     2581 aaatgaaaag cgcgtcgatg tggtgtatgc caaagaggtg gatttttcac gagcccccaa
     2641 cctgtttggc ctgtttgcca ataggcgcgc agctttgcaa gcattgcaga ccatcgctga
     2701 tgaacaaaaa ctttgttatg gcctgctggg actggaaccg ttaagtcgcg gtcgtgcatg
     2761 ttttcgttca gcgctaaaac gttgcgccgg agcatgctgc ggtaaagaga gccatgagga
     2821 acatgcgcta cgcttgcgcc agtctctgga gcgtttgcgg gtggtgtgtt ggccttggca
     2881 aggggcggtg gcgctgaaag aacagcaccc ggaaatgact caatatcata ttattcaaaa
     2941 ctggctgtgg ctgggggcgg ttaattcgct ggaagacgcg acaacgttaa ttcggacacc
     3001 cgccgggttt gatcacgacg gttataaaat tctttgtaag ccgctgcttt ccggtaacta
     3061 tgaaattact gaacttgatc cggcgaatga ccagcgagcc agttgatttc actgaacaac
     3121 agtttacctt gcggttgtaa aagccgcagg gtgtgcctgc catcgaacca gcacgcgccc
     3181 tggtcggtag tgagcaattt atcgcccagt tgccacgccc cgttaatcac aaacaccacc
     3241 ccgccgcgtg agccaaaggt agtaaacgta cgttcggcaa ttctgacttt cgccttacag
     3301 acatccaggc gtgtcatgat gttgaaatcc atcgacatct gcccttccgt cagtttcgct
     3361 tttaccacct ggtccgctgc aaaggcaaaa ggctgtaacg gttttaaggt atggttaaag
     3421 cggtctgcgc tttcaaggag catctcgccg ccttccagca acgtcactat cctttccatg
     3481 ccgggaaaca aagaaaactc cccattcgcc gcgatggatg caatgctggc acgccagtaa
     3541 aaatcacgtt ttgccggtgg gaaagtgcaa atttcgcgcg tttcaccggc agcatttcgc
     3601 cacagattca ccgacatttt acgcatatca aagtattcca tactcgctcc cggcccgttc
     3661 ttttcattgt tatcgttcag gtaaccgtgg atggttatcg gcaactcggg tgatttacgt
     3721 tagtggtgat caggcttttt ttacaactgt ttgagaagag aaaagaaaac cgccgatcct
     3781 gtccaccgca ttactgcaag gtagtggaca agaccggcgg tcttaagttt tttggctgaa
     3841 agattattca gcagttgcag gcattttacc ttttgccgct ggacgttctg tcagacgctt
     3901 ctcaaaatta gcattaaatt gctttttctg ttccggcgtc aggatgttgt aaattttgtt
     3961 ctgggtttcc atgtgcgcca gcatgttagc tttgcgctgt tcttccattt ttgcgatctg
     4021 cgcttcagct tttgctttat cgaaggtatc gctgacaatg atgtcatgca ttgcgcggcg
     4081 ttcttccagc ggcggacgtt tcatctggtc acgctggcct ttcatgattt cgcggatctg
     4141 ctgtttctgc gcgtcggtca ggttcaggtc tttgaacatc atgtcctgat gcggaccgaa
     4201 cttgcctttg tggtgcatca tctgcttcgc gtcagccggt gctgcggcat gggccaggtt
     4261 agccgcgcca agagccaggg tagaggcaac aaacagtgca gttaatttac gcatattcta
     4321 tatccttcct ttcagttatt tattacggct ttcttaagta gcgtgccgtg ttgacg
//
LOCUS       DADMHM010000253         4324 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.258, whole genome shotgun sequence.
ACCESSION   DADMHM010000253 DADMHM010000000
VERSION     DADMHM010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4324)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4324)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4324
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.258"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..213)
                     /locus_tag="JN125_003848"
     CDS             complement(<1..213)
                     /locus_tag="JN125_003848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416381.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family protein"
                     /protein_id="HAY8873448.1"
                     /translation="MLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKF
                     RASGQPVFLVRVGWSADYAEALKQPVD"
     gene            523..2295
                     /gene="aspS"
                     /locus_tag="JN125_003849"
     CDS             523..2295
                     /gene="aspS"
                     /locus_tag="JN125_003849"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HAY8873449.1"
                     /translation="MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI
                     VQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTII
                     NRADVLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDI
                     ETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRD
                     EDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAE
                     RRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQI
                     DEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLNAEIIEAILDRTAAQDGDMI
                     FFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHP
                     FTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEE
                     EQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTE
                     APSFANPTALAELSIQVVKKAENN"
     gene            2413..2865
                     /gene="nudB"
                     /locus_tag="JN125_003850"
     CDS             2413..2865
                     /gene="nudB"
                     /locus_tag="JN125_003850"
                     /EC_number="3.6.1.67"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin triphosphate diphosphatase"
                     /protein_id="HAY8873450.1"
                     /translation="MKDKVYKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVE
                     EGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFSHLRHRYAPGVTRNTESW
                     FCLALPHERQIVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVINAA"
     gene            2894..3634
                     /locus_tag="JN125_003851"
     CDS             2894..3634
                     /locus_tag="JN125_003851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000907250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HAY8873451.1"
                     /translation="MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPD
                     ANPRLRAAVDKALSNNMTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGTAIMIECL
                     SDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKGDEDTIMEAALEAGAE
                     DVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMR
                     LIDMLEDCDDVQEVYHNGEISDEIAATL"
     gene            3669..4190
                     /gene="ruvC"
                     /locus_tag="JN125_003852"
     CDS             3669..4190
                     /gene="ruvC"
                     /locus_tag="JN125_003852"
                     /EC_number="3.1.22.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005068993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HAY8873452.1"
                     /translation="MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSR
                     LKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEY
                     AARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQM
                     SESRLNLARGRLR"
BASE COUNT         1070 a         1074 c         1213 g          967 t
ORIGIN      
        1 atcaaccggc tgttttaatg cttcggcgta atcggcagac cagccaactc gcaccagaaa
       61 cacgggctga ccgctggcgc gaaatttcgc cgccagcttc ccggcgcgat taactacctc
      121 atcggcagta tgtggaccac cggcaaaagg taagatgcct tcttgtaaat cgatcaccac
      181 caacgcagtg gttttagcat taagttcaag catgctgact cctgaaaaaa caaaatcgtg
      241 cctcatacct taatgcgatt agccgatggc ggaacgacaa attttgttaa tgtttatgag
      301 ttcgggcaac acctttatag caaactggcg tagagtctga tttcaggccc gatataaagt
      361 ggtaacgagg cgttccagcg cgggccaggc tcttacggtg cggcagaatt tccagtataa
      421 tagccgcctt ttttcattca gttgtgacat acagctaacg ctgcgacttg gtcacctgcg
      481 cagcaggggg catccgccgg cagctaagtt aagggatatc tcatgcgtac agaatattgt
      541 ggacagctcc gtttgtccca cgtggggcag caggtgactc tgtgtggttg ggtcaaccgt
      601 cgtcgtgatc ttggtagcct gatcttcatc gatatgcgcg accgcgaagg tatcgtgcag
      661 gtatttttcg atccggatcg tgcggacgcg ttaaagctgg cctctgaact gcgtaatgag
      721 ttctgcattc aggtcacggg caccgtacgt gcgcgtgacg aaaaaaatat taaccgcgat
      781 atggcgaccg gcgaaatcga agtgctggcg tcctcgctga ctatcatcaa ccgcgcagat
      841 gttctgccgc ttgactctaa ccacgtcaac accgaagaag cgcgtctgaa ataccgctac
      901 ctcgacctgc gtcgtccgga aatggctcag cgcctgaaaa cccgcgctaa aatcaccagc
      961 ctggtgcgcc gttttatgga tgaccacggc ttcctcgaca tcgaaactcc gatgctgacc
     1021 aaagccacgc cggaaggcgc gcgtgactac ctggtgcctt ctcgtgtgca caaaggtaaa
     1081 ttctacgcac tgccgcaatc cccacagtta ttcaaacagc tgctgatgat gtccggtttt
     1141 gaccgttact atcagatcgt taaatgcttc cgtgacgaag acctgcgcgc tgatcgtcag
     1201 cctgagttta ctcagatcga tgtggaaact tctttcatga ccgcgccgca agtgcgtgaa
     1261 gtgatggaag cgctggtgcg tcatttgtgg ctggaagtga agggcgtgga tctgggcgat
     1321 ttcccggtaa tgacctttgc ggaagcagaa cgccgttatg gttctgataa accggatctg
     1381 cgtaacccga tggaactgac cgacgttgcc gatctgctga aatctgttga gtttgcagta
     1441 tttgcggggc cggcgaacga tccgaaaggc cgtgttgccg ctctacgtgt tccgggtggc
     1501 gcatcgctga cccgtaagca gatcgacgaa tacggtaact tcgttaaaat ctacggcgcg
     1561 aaaggtctgg cttacatcaa agttaacgaa cgcgcgaaag gtctggaagg tatcaacagc
     1621 ccggtagcga agttccttaa tgcagaaatc atcgaagcca tcctggatcg tactgccgcg
     1681 caagatggcg atatgatttt cttcggtgcc gacaacaaga aaattgttgc cgacgcgatg
     1741 ggcgcactgc gcctgaaagt gggtaaagac cttggtctga ccgacgaaag caaatgggca
     1801 ccgctgtggg ttatcgactt cccgatgttt gaagacgacg gtgaaggcgg cctgacggca
     1861 atgcaccatc cgttcacctc accgaaagac atgactgctg cagaactgaa agctgcaccg
     1921 gaaaatgcgg tggcgaacgc ttacgatatg gtcatcaatg gttacgaagt gggcggtggt
     1981 tcagtacgta tccataatgg tgatatgcag cagacggtgt ttggtattct gggtatcaac
     2041 gaagaggaac agcgcgagaa attcggcttc ctgctcgacg ccctgaaata cggtactccg
     2101 ccgcacgcag gtctggcatt cggtcttgac cgtctgacca tgctgctgac tggcaccgac
     2161 aatatccgtg acgttatcgc cttcccgaaa accacggcgg cagcgtgtct gatgactgaa
     2221 gcaccgagct ttgctaaccc gactgcactg gctgagctga gcattcaggt tgtgaagaag
     2281 gcagagaata actgatatga ctcaaataca cgaaatcatt cgcgttgcat caaggcggca
     2341 attgagtgaa ctcccatgag catagataac tatgtgaatg ggatgagcga aggcagtcaa
     2401 cgaagaggca gcgtgaagga taaagtgtat aagcgtcccg tttcgatctt agtggtcatc
     2461 tatgcacaag atacgaaacg ggtgctgatg ttgcagcggc gtgacgatcc cgatttctgg
     2521 cagtcggtaa ccggcagcgt ggaagagggt gaaaccgcgc cgcaagctgc catgcgcgaa
     2581 gtaaaggaag aggtcaccat tgatgttgtc gctgaacaac tgaccttaat tgactgtcag
     2641 cgcacggtag agtttgaaat tttttcacat ttacgtcatc gctatgcgcc gggcgtgacg
     2701 cgtaatacgg aatcatggtt ctgtcttgcg cttccgcatg agcggcagat cgttttcact
     2761 gaacatctgg cttacaagtg gcttgatgcg cctgctgcgg cggcgctcac taagtcctgg
     2821 agcaaccggc aggcgattga acagtttgta attaacgctg cctgaacagg cagggctatc
     2881 tggagatatt tttatggcag gtcatagtaa atgggccaac accagacatc gtaaagctgc
     2941 gcaggatgct aagcgcggta aaatcttcac taaaatcatt cgtgagctgg taaccgcggc
     3001 taagctgggc ggtggcgatc cggacgctaa cccgcgtctg cgtgcggcgg tggataaagc
     3061 actgtctaac aacatgaccc gtgacacact gaaccgcgca attgcacgtg gtgtgggcgg
     3121 tgatgatgat gcaaacatgg aaaccatcat ctacgaaggt tacggtcctg gcggcacggc
     3181 aatcatgatt gaatgtctgt ctgacaaccg caaccgtacc gttgctgaag tgcgtcatgc
     3241 attcagcaaa tgtggcggta acctcggtac agatggttcc gtagcctatc tgttcagcaa
     3301 aaaaggcgtg atctccttcg agaaaggcga tgaagacacc atcatggaag cagctctgga
     3361 agcaggtgct gaagacgttg tgacctatga tgacggcgcg attgatgtct acactgcatg
     3421 ggaagaaatg ggtaaagtgc gcgacgctct ggaagcggca ggtctgaaag cagacagcgc
     3481 ggaagtttcc atgatcccgt ccaccaaagc tgatatggat gcagaaaccg caccgaaact
     3541 gatgcgtctg atcgatatgc tggaagattg cgacgacgtg caggaagttt accataacgg
     3601 tgaaatctct gatgagattg cagcgactct ctgatgaggc ctgctaaaca gcaaaacgga
     3661 gacgcgtgat ggctattatt ctcggcattg acccgggttc gcgcgtgacc ggctatggcg
     3721 tcatccgcca ggtaggcagg caactgtcct acctgggtag cggatgcata cgcaccaagg
     3781 tggatgattt accgtctcgt ctgaagctca tctatgcggg tgtgacggaa atcatcaccc
     3841 agttccagcc agattatttc gccattgaac aagtctttat ggccaaaaat gccgactcgg
     3901 ctctgaaact ggggcaggcg cgcggcgtgg cgattgtggc ggcggtgaat caggaattgc
     3961 cggtatttga atatgcggca cgtcaggtaa agcaaacggt ggtaggtatt ggtagtgccg
     4021 aaaaaagtca ggtgcagcat atggtccgca ccttgctgaa actgcccgct aatccacagg
     4081 cggatgccgc cgatgcgtta gctatcgcga ttacccattg tcacgtcagc cagaatgcaa
     4141 tgcagatgag cgaatcgcgg ctgaacctgg cgagagggcg actgcgttaa gttataccgc
     4201 ctcggtcagt tcaggctgag gcgtttcaac tccctccgcg tgaatcaaca ccaaacccgg
     4261 atgatgccac aaactggctg gcgtgacggt tttacgctcc cacggaatag aacctaagaa
     4321 ccag
//
LOCUS       DADMHM010000254         4322 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.259, whole genome shotgun sequence.
ACCESSION   DADMHM010000254 DADMHM010000000
VERSION     DADMHM010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4322)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4322)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4322
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.259"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(1..113)
                     /locus_tag="JN125_003853"
                     /pseudo
     CDS             complement(1..113)
                     /locus_tag="JN125_003853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000080164.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
     gene            185..367
                     /locus_tag="JN125_003854"
     CDS             185..367
                     /locus_tag="JN125_003854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001296208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization protein"
                     /protein_id="HAY8873453.1"
                     /translation="MNHPVIGVVTKADLASMEQISLVKSWLREAGAHNVLVTSAVNNN
                     GVTELFALLHTEEGCC"
     gene            complement(468..797)
                     /locus_tag="JN125_003855"
     CDS             complement(468..797)
                     /locus_tag="JN125_003855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310836.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF496 family protein"
                     /protein_id="HAY8873454.1"
                     /translation="METTKPSFQDVLEFVRLFRRKNKLQREIQDVEKKIRDNQKRVLL
                     LDNLSDYIKPGMSVEAIQGIIASMKGDYEDRVDDYIIKNAELSKERRDISKKLKAMGE
                     MKNGEAK"
     gene            complement(969..1487)
                     /locus_tag="JN125_003856"
                     /pseudo
     CDS             complement(969..1487)
                     /locus_tag="JN125_003856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416512.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1582..2562)
                     /locus_tag="JN125_003857"
     CDS             complement(1582..2562)
                     /locus_tag="JN125_003857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110-like element IS621 family transposase"
                     /protein_id="HAY8873455.1"
                     /translation="MEHELHYIGIDTAKEKLDVDVLRPDGRHRTKKFANTTKGHDELV
                     SWLKGHKIDHAHICIEATGTYMKPVAECLYDAGYIVSVINPALGKAFAQSEGLRNKTD
                     TVDARMLAEFCRQKRPAAWEAPHPLERALRALVVRHQALTDMHTQELNRTETAREVQR
                     PSIDAHLLWLEAELKRLEKQIKDLTDDDPDMKHRRKLLESIPGIGEKTSAVLLAYIGL
                     KDRFAHARQFAAFAGLTPRRYESGSSVKGASRMSKAGHVSLRRALYMPAMVATSKTEW
                     GRAFRDRLAANGKKGKVILGAMMRKLAQVAYGVLKSGVPFDASRHNPVAA"
     gene            complement(2755..3306)
                     /locus_tag="JN125_003858"
                     /pseudo
     CDS             complement(2755..3306)
                     /locus_tag="JN125_003858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416512.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
     gene            complement(3504..3977)
                     /gene="sbmC"
                     /locus_tag="JN125_003859"
     CDS             complement(3504..3977)
                     /gene="sbmC"
                     /locus_tag="JN125_003859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase inhibitor SbmC"
                     /protein_id="HAY8873456.1"
                     /translation="MNYEIKQEEKRTVAGFHLVGPWEQTVKKGFEQLMMWVDSKNIVP
                     KEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPENSEGVILTEITGGQYAVAVARVV
                     GDDFAKPWYQFFNSLLQDSAYEMLPKPCFEVYLNNGAEDGYWDIEMYVAVQPKHH"
     gene            complement(4096..>4322)
                     /locus_tag="JN125_003860"
     CDS             complement(4096..>4322)
                     /locus_tag="JN125_003860"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416514.4"
                     /note="removes C-terminal D-alanyl residues from
                     sugar-peptide cell wall precursors; penicillin-binding
                     protein 6B; one of four, DD-carboxypeptidase low-molecular
                     weight penicillin-binding proteins that remove terminal
                     D-alanine from pentapeptide side chains; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="serine-type D-Ala-D-Ala carboxypeptidase DacD"
                     /protein_id="HAY8873457.1"
                     /translation="FWMVLPKAEIPHIKAKYTLDGKELTAPISAHQRVGEIELYDRDK
                     QVAHWPLVTLESVGEGSMFSRLSDYFHHKA"
BASE COUNT         1076 a         1131 c         1027 g         1088 t
ORIGIN      
        1 actacgttcc atggcaggag ttcgtcaaca cggttggagg gccattccgg cagtatgctc
       61 agaatatggc gcagatacgc ttccggatcg atatcgttca gacggcaggt gcctgctttt
      121 ctggcaacaa gcaggaatct cagcgctgaa gcaggaatta gaggtaaaaa cgccctaccg
      181 ggccatgaat cacccggtca ttggagtagt aaccaaagca gatttagcca gcatggaaca
      241 aatatctttg gtgaaaagtt ggttacggga agctggagcg cacaacgtgt tagtaaccag
      301 tgcagttaat aacaatggag ttacagaact ttttgccttg ctgcatacag aagaaggctg
      361 ttgttaattt cgattggttc tcggatgaga atgatgacgg tgatacacag ataagaatca
      421 atgagcaatg agggttgccg ggcaaccctc attgaataaa acgggaatta cttcgcttcg
      481 ccgtttttca tttcgcccat agctttcagc tttttggaga tatcgcggcg ttctttggag
      541 agctcggcat ttttgatgat gtaatcgtca acgcgatctt catagtcacc tttcatgctg
      601 gcgatgatgc cctggattgc ttcaacgctc atccccggct tgatgtaatc gctcaggttg
      661 tccagcagca ggacgcgctt ctggttgtca cggatctttt tctcaacgtc ctgaatttca
      721 cgttgcagtt tgttcttacg acggaacaga cgaacaaatt ccagtacgtc ctggaatgaa
      781 ggcttggtag tttccatttt tatacccctg ataatgtgag agtcggattc gtttaagcaa
      841 ccgctattcg ttagggccaa cattactcat agctgccgca gatgacaatg cttttatccc
      901 ttttcactat catacccttt atccttgctg aatcgaagca gcagcaagat gattctgaag
      961 ttcaggaatt atttgcgcaa ggcccggcaa atcagattcg atagcaactc aagctgatgc
     1021 gccgtttcca tgttcagcca cacataacca tagattggtg tttccacaac cttcaggtca
     1081 tggtggttat tgagcaactg acgcagctct tccacagcat cgttcaattt ttccgtattg
     1141 gcaaaaaccg gctgcggatt accttcgtac agcgcatgaa caaggctcag cagtatttgc
     1201 tgcatcatgt gctgggtatc acgaagtttt tgcgcgttca ataacacgaa atggctgggg
     1261 cgcgtggccc agtatgcatt gatttgcaac tccagcatac aaaccagatt gcggttaatg
     1321 gtctggatac cttcatatat cgattttgga atacgggttt ctttgctggc gggcgcaatc
     1381 agtccacgca ttttcacggc atcggtcagg agtttttgta gatggctttc cagacgtggg
     1441 cgttcgagta agttcggtga gaatgcagat tgatagatac tgttatggcc tgcaagtttt
     1501 ttcctggtcc ggtttcccgg attgcaggca tgccagacac agcgccgtca ggcgctgttt
     1561 ttttcatccc ttccgcgatt tttacgccgc taccggatta tgccgtgacg catcgaacgg
     1621 cacgcctgac ttcagcactc catacgccac ctgtgccagc ttgcgcatca tcgcgccgag
     1681 aatcaccttt cctttcttgc cattagccgc cagacggtcg cggaacgccc gtccccactc
     1741 agtcttactg gtggctacca ttgcgggcat atacaacgcc ctgcgaagcg acacatgtcc
     1801 ggccttactc atccggctcg cccctttcac actgctacct gattcataac gccgtggtgt
     1861 cagacccgca aaagcggcga actgtctggc atgggcgaag cggtccttca gaccgatata
     1921 agccagcaat accgcagatg ttttctctcc gatacccggg atgctttcca gcagtttcct
     1981 gcggtgtttc atatccggat catcgtctgt caggtctttt atctgcttct caagacgctt
     2041 cagctctgct tcaagccaca gaaggtgagc atcaatgctc ggtctctgga cttcccgcgc
     2101 cgtttcagtg cgattcagtt cctgcgtgtg catatctgtc agcgcctggt ggcggactac
     2161 cagggcacgc aacgcgcgtt caagcgggtg aggcgcttcc caggctgcag ggcgcttctg
     2221 acgacagaac tctgccagca tgcgcgcatc cacggtatca gtcttgttac gcagtccttc
     2281 actctgagcg aaagctttac ccagcgcagg attaatgact gacactatgt agccagcatc
     2341 gtaaaggcac tcagcgacag gtttcatata ggtgccggtc gcttcgatgc agatatgcgc
     2401 atggtcaatc ttgtgacctt tcagccagct caccagctca tcgtgccctt tagtggtgtt
     2461 agcgaatttt ttggtgcgat gacgaccatc aggacgcaac acatcgacat ccagtttctc
     2521 tttagcggtg tcgataccga tataatgaag ttcatgttcc atagtgaaac caaccttgca
     2581 aatacggatt accgggaaaa ccggtccatg atactgtccg gtttatcact ttgggagaaa
     2641 ggcagtccgc tgcataaatc tacgcaacag gttagaaccc aaggcccgat acggcatgcg
     2701 gactgcaggc agagaaaact ggccgatttt ctctgcactg gagggataat acaagacccg
     2761 attatactcg gtcagacttt tcgccagttg aatgcgccag tggatgaacg cccgttgtgg
     2821 ccagataccg gtaaacaaca ttgccagtaa agagccgagg atcacatcgc cgcttcgcca
     2881 taacgccgta tcaatttcac ctgtcgggga acccacaaca attgccagcg tcaccccaat
     2941 caataaacct tgatacggtt tcttgcccag cgccagccaa ccgcaaagga acatggccgc
     3001 cgcgcaccag actaacatca gcggtaacga gattaactcc agttgcagag cgataagacc
     3061 taaaatcgaa cccaacaccg taccgccaat acgctcaaag gcgcgaggga caacgttacc
     3121 ccagaacgag attggcccca taatcaccac catggtgacc agcggccagg tgctttccgg
     3181 gatagtaaac aggcggataa tgagaaaagt gagcaggaat gccagcgcga cccgagtacc
     3241 atgcacaatg cggtaatggc ggtatacccg gatttcaaac gggcttaatg acttatcggc
     3301 acgcacgcag aaactccgta atgagattaa aagcgctcat aactcatctg tcggccagaa
     3361 ggcgcgcctc tgaattatcc gacggacaaa ccgggaacag tgtaatttcc cggcaggagc
     3421 gaaaaaattg aaaggcgcat cttactcttt tcgctttcaa aaaaaagagt ggtcatcgcg
     3481 ttaacacacc gccctgagat gaattagtga tgttttggct gcaccgcaac atacatttcg
     3541 atatcccagt acccatcttc cgcgccattg ttcaaataaa cctcgaagca gggctttggt
     3601 aacatttcat aagcactgtc ctgcaagaga ctattaaaga actgatacca gggtttagca
     3661 aaatcatcac cgactacacg agctaccgcc accgcatact gaccacctgt aatttctgtc
     3721 agaatgacgc cctcactgtt ttcgggaagc gtaaagtaac ccggcaccgt cacgacggtg
     3781 tcgcagcgta atttttcggc gggtgtttca tctggattgt cgtaatagac agcaacccac
     3841 tccttcggca caatattttt gctatctacc cacatcatca actgctcaaa gcctttcttt
     3901 accgtctgtt cccacgggcc aacgagatgg aaacctgcaa cggtacgttt ctcttcctgc
     3961 ttaatctcgt agttcatgac gcctccattg atactgtttt tatatacagt atagttgcaa
     4021 aattaaaacc acaaggaatg agtgttgatt atgcgagcag actcgcactc ctgccagtct
     4081 gctgcaaaag aaaggtcagg ccttatggtg gaaataatca ctcaggcgag aaaacatgct
     4141 gccttccccg acagattcca gggtaaccag cggccagtgc gccacctgtt tatcacggtc
     4201 gtaaagttca atttccccta cccgctgatg ggcgctaatt ggcgcggtga gttctttacc
     4261 atcaagggta tatttggctt tgatatgtgg aatttcggct ttcggtagca ccatccagaa
     4321 ct
//
LOCUS       DADMHM010000255         4285 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.260, whole genome shotgun sequence.
ACCESSION   DADMHM010000255 DADMHM010000000
VERSION     DADMHM010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4285)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4285)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4285
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.260"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..309)
                     /locus_tag="JN125_003861"
     CDS             complement(<1..309)
                     /locus_tag="JN125_003861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HAY8873458.1"
                     /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA
                     RAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGA
                     I"
     gene            complement(424..499)
                     /locus_tag="JN125_003862"
     tRNA            complement(424..499)
                     /locus_tag="JN125_003862"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(464..466),aa:Thr,seq:ggt)
     gene            complement(506..580)
                     /locus_tag="JN125_003863"
     tRNA            complement(506..580)
                     /locus_tag="JN125_003863"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(545..547),aa:Gly,seq:tcc)
     gene            complement(697..781)
                     /locus_tag="JN125_003864"
     tRNA            complement(697..781)
                     /locus_tag="JN125_003864"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(745..747),aa:Tyr,seq:gta)
     gene            complement(790..865)
                     /locus_tag="JN125_003865"
     tRNA            complement(790..865)
                     /locus_tag="JN125_003865"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(830..832),aa:Thr,seq:tgt)
     gene            1227..2177
                     /gene="coaA"
                     /locus_tag="JN125_003866"
                     /gene_synonym="panK"
     CDS             1227..2177
                     /gene="coaA"
                     /locus_tag="JN125_003866"
                     /gene_synonym="panK"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pantothenate kinase"
                     /protein_id="HAY8873459.1"
                     /translation="MSIKEQTLMTPYLQFDRNQWAAQRDSVPMTLSEDEIARLKGINE
                     DLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKS
                     TTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFV
                     SDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVF
                     VSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMT
                     LWKEINWLNLKQNILPTRERASLILTKSANHAVEEVRLRK"
     gene            complement(2206..3171)
                     /gene="birA"
                     /locus_tag="JN125_003867"
     CDS             complement(2206..3171)
                     /gene="birA"
                     /locus_tag="JN125_003867"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional biotin--[acetyl-CoA-carboxylase]
                     ligase/biotin operon repressor BirA"
                     /protein_id="HAY8873460.1"
                     /translation="MKDNTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLR
                     DWGVDVFTVPGKGYSLPEPIQLLNAEQILGQLDGGSVAVLPVIDSTNQYLLDRIGELK
                     SGDACVAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEV
                     LRKLGADKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRVEESV
                     VNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQEGLAPYLSRWEKLDNFINRPV
                     KLIIGDKEIFGISRGIDKQGALLLEQDGIIKPWMGGEISLRSAEK"
     gene            complement(3168..4196)
                     /gene="murB"
                     /locus_tag="JN125_003868"
     CDS             complement(3168..4196)
                     /gene="murB"
                     /locus_tag="JN125_003868"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HAY8873461.1"
                     /translation="MNHSLKPWNTFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVL
                     ILGEGSNVLFLEDYRGTVIINRIKGIEIHDEPDAWYLHVGAGENWHRLVKYTLQEGMP
                     GLENLALIPGCVGSSPIQNIGAYGVELQRVCAYVDCVELATGKQVRLTAKECRFGYRD
                     SIFKHEYQDRFAIVAVGLRLLKEWQPVLTYGDLTRLDPTTVTPQQVFNAVCHMRTTKL
                     PDPKVNGNAGSFFKNPVVSAETAKALLAQFPTAPNYPQAGGSVKLAAGWLIDQCQLKG
                     MQMGGAAVHRQQALVLINEDNAKSEDVVQLAHHVRQKVGEKFNVWLEPEVRFIGASGE
                     VSAVETIS"
BASE COUNT         1096 a         1067 c          967 g         1155 t
ORIGIN      
        1 gatcgcgccg tccatctgag cagcaccggt gatcatgttt ttaacatagt cggcgtgccc
       61 cgggcagtct acgtgtgcgt agtgacgggt cggggtgtcg tattcaacgt gagaagtgtt
      121 gatggtgata ccacgagctt tttcttccgg cgcgttatcg atctggtcga atgcgcgagc
      181 agcaccgccg taggttttag ccagtacggt agtgattgca gcggtcagcg ttgttttacc
      241 atggtcaacg tggccgatag taccgacgtt aacgtgcggt tttgtacgtt caaacttttc
      301 tttagacatc gattgtccct ctaagacacg gataaatcgg tgatatcacc acatcaacca
      361 ggcaacatgc ccgacttgtt gaatgcaata aacagaagga aaaaacaggg aggagaaaag
      421 aagtggtgct gataggcaga ttcgaactgc cgacctcacc cttaccaagg gtgcgctcta
      481 ccaactgagc tatatcagca catcttggag cgggcagcgg gaatcgaacc cgcatcatca
      541 gcttggaagg ctgaggtaat agccattata cgatgcccgc atcctggaac tcggctacct
      601 gattttcatt ctgcactgaa tatcgagaga agctctcttt attcgagccg gtaagcgaac
      661 ttatcgtctc gggctacgcc atcgcgtggc cgaaattggt ggtgggggaa ggattcgaac
      721 cttcgaagtc tgtgacggca gatttacagt ctgctccctt tggccgctcg ggaaccccac
      781 cggacttgat ggtgccgact accggaatcg aactggtgac ctactgatta caagtcagtt
      841 gctctaccta ctgagctaag tcggcatcaa gtagcgcgca ttctatggag acatgcgagt
      901 tcatgcaact aaaaaattgc ataatttgtt ttattggtca cattttatgc aacacgatga
      961 agaaacagcc gaatggaggg cagattagca cactttttca acatcattgt gctcaacaat
     1021 gcgctcctgc taaaccataa ttcttcttat cagatggaat atctgtcaca ttgcttttca
     1081 acgatagctt cctgggagag attttttctt attattcctc cccatctggt gttaccctcc
     1141 tgcccattaa cccattcaac agaactgtga cgcgccatgg caaatatcgc tttgccgata
     1201 gagctatgac cgccagaaac atgcttatga gtataaaaga gcaaacgtta atgacgcctt
     1261 acctacagtt tgaccgcaac cagtgggcag ctcagcgtga ttccgtacct atgacgttat
     1321 cggaagatga gatcgcccgt ctcaaaggta ttaatgaaga tctctcgtta gaagaagttg
     1381 ccgagatcta tttacctctg tcacgtttgc tgaacttcta tataagctcg aatctgcgcc
     1441 gtcaggcagt tctggaacag tttcttggta ccaacgggca acgcattcct tacattatca
     1501 gtattgctgg tagtgtcgcg gtggggaaaa gtacaaccgc ccgtgtattg caggcgctat
     1561 taagccgttg gccggaacat cgtcgtgttg aactgatcac tacagatggc ttccttcacc
     1621 ctaatcaggt tctgaaagaa cgtggtctga tgaagaagaa aggcttcccg gaatcgtatg
     1681 atatgcatcg cctggtgaag tttgtttccg atctcaagtc cggcgtgcca aacgttacag
     1741 cccctgttta ctcgcatctt atttatgatg tgatcccgga tggagataaa actgttgttc
     1801 agcctgatat tttaattctt gaagggttaa atgtcttaca gagcggaatg gattatccac
     1861 acgatccaca tcatgtattt gtttctgatt ttgtcgattt ttcgatatat gttgatgcac
     1921 cggaagactt acttcagacg tggtatatca accgtttcct gaaattccgc gaaggggctt
     1981 ttaccgaccc ggattcctat tttcataact acgcgaaatt aactaaagaa gaagcgatta
     2041 agactgccat gacattgtgg aaagagatca actggctgaa cttaaagcaa aatattctac
     2101 ctactcgtga gcgcgccagt ttaatcctga cgaaaagtgc taatcatgcg gtagaagagg
     2161 tcagactacg caaataattt gcaggggagc gaatactccc ctttcttatt tttctgcact
     2221 acgcagggat atttcaccgc ccatccaggg ttttattatt ccatcctgct caagtaataa
     2281 agccccctgt ttgtctattc cgcgtgaaat gccaaatatt tctttatcac caatgataag
     2341 tttcactggg cgattaataa aattatccag cttttcccag cgcgacagat aaggtgccaa
     2401 tccttcttgt tcgaagagtt ccaacgcagc acgtaattca cgtattagca tggccgccaa
     2461 cgtattacga tcgagattga tccccgcttc ctgcagcgtg atccacccct gattaacgac
     2521 actctcttca acacggcgca ttgccatgtt gatcccggct ccaatgacta tttgcgccgc
     2581 atcgccagtt ttgccagtca gctccacaag aatgcctgcc agcttgcgat cctgcagata
     2641 gaggtcatta ggccatttga cacgaacttt atctgctccc agcttgcgta atacttccgc
     2701 catcacgata ccgataacca gacttaaacc aatcgccgcc gccgggcctt gttccagacg
     2761 ccagaacatc gacaaatata agtttgcgcc aaaaggcgaa aaccatttcc gcccccggcg
     2821 accacggcca gcctgctggt attctgcaac acaggcatcg cccgatttaa gctctccgat
     2881 acgatcaaga aggtactgat tcgtggagtc aataactggc agcacggcta cactaccgcc
     2941 atccagctga cccaatatct gttcagcatt aagtaactgg atgggctcag gcaggctgta
     3001 tcctttaccc ggaacggtaa agacatcaac gccccagtca cgcagtgtct gaatgtgttt
     3061 attaatagcc gcccggctca ttcccagcgt ttcacccaac tgctcgccag agtgaaattc
     3121 accgttcgct aacagggcaa tcaatttcag tggcacggtg ttatccttca tgaaattgtc
     3181 tccactgcgc tcacttcacc tgatgcacca ataaagcgga cttcaggctc aagccagaca
     3241 ttaaattttt cacccacttt ttgtcttaca tggtgtgcca gttgcaccac atcttcgctt
     3301 tttgcattgt cttcattaat gagaactaac gcctgttgac ggtgcaccgc agccccaccc
     3361 atttgcatcc cttttagctg gcactgatca ataagccaac ctgctgccag ttttactgaa
     3421 ccacccgcct gggggtaatt tggtgctgtt ggaaattgcg ccagtaatgc tttagccgtt
     3481 tcggcagata caacagggtt tttgaagaaa ctaccggcat tgccattcac ttttggatca
     3541 gggagtttgg tggtgcgcat atgacacacc gcattaaata cttgctgtgg cgttactgtt
     3601 gtaggatcca gacgagttaa gtcaccatac gttagtacag gttgccactc ttttagcaga
     3661 cgcagaccta cggctacaat ggcgaagcga tcctggtatt catgtttaaa aatactgtcg
     3721 cgatagccaa aacggcactc tttggcagtt aagcgcactt gcttacctgt cgccagttca
     3781 acacaatcaa cataagcgca aactcgctgt aattctacgc cataagcacc aatattctgg
     3841 ataggtgatg agccgacaca accaggaatt aatgccagat tttccagacc aggcatacct
     3901 tcctgcaaag tgtattttac caggcgatgc cagttttctc cggctcctac atgtaaatac
     3961 cacgcatcag gttcatcatg aatttcgata cctttgatcc ggttgatgat caccgtgccg
     4021 cgatagtctt ccagaaaaag tacattactt ccttcaccca gaataagaac gggttgtcct
     4081 tctgcggttg catactgcca ggcattgagt aattgttgtt cgtcttcggc acatacaatg
     4141 tgctgagcat tatgatcaat gccaaatgtg ttccagggtt ttaaggagtg gttcatagct
     4201 gctttcctga tgcaaaaacg aggctagttt accgtatctg tggggggatg gcttgtagtt
     4261 atgacgacag ggagagtttg tagaa
//
LOCUS       DADMHM010000256         4207 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.261, whole genome shotgun sequence.
ACCESSION   DADMHM010000256 DADMHM010000000
VERSION     DADMHM010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4207)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4207)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4207
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.261"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(862..1521)
                     /locus_tag="JN125_003869"
     CDS             complement(862..1521)
                     /locus_tag="JN125_003869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000852869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4145 domain-containing protein"
                     /protein_id="HAY8873462.1"
                     /translation="MAEYYPAVFEAEAFNCPHCGVYARQFWRSMYGNSNVLAVKSTEF
                     RMSTCSHCGEDAYWYQGNMLIPAAGNVELPNPDMPDDCKSDYMEARSIINLSPKGAAA
                     LLRLCLQKLMVHLGEPGNNINADIRSLVQKGLPVRIQQAADICRIVGNQAVHPGEISL
                     DDDPQLAHGLFKLLNIIVTEQITRPKEIEAMFQSMPEGPRQGIENQDRQAREQQQAAN
                     E"
     gene            complement(1514..3121)
                     /locus_tag="JN125_003870"
     CDS             complement(1514..3121)
                     /locus_tag="JN125_003870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005070752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HAY8873463.1"
                     /translation="MLNSRTYLYQRNGVFYIRLRMKSTGRLTASLPSHNRYKLASVSL
                     RTKDRRTAMAHSRHIKSALKAIHADNPNASYEELREHLKTIVEWELSVSRDDLNDPES
                     YQLYVDQYDDIKSNLREAVATERLTVDQHRYINDVIGVLKACQDRLRGDSSGLLSYLE
                     PETSSLRPSVSLSVLADPEVPEPKALTLASLIEQYEQENAQNWKPATLSENRASHSTL
                     IEIFDYLDIQDVGKATRSDMLRVREVLQQIPKNRKQRFKSMPLSDLLNRESKTDCLDV
                     VTINNKYLIKMAAVFKWAVRNDLIAKNLTEGLELKVPQRKASDARDAFSPEQVGQLLV
                     AAKAYSQKTAGKPYHYYVTALAAITGARLNEVAQLQVKDVRVTEAGTVYIHINEDDSS
                     LPGKSVKNAHSDRCVPLVDGAYGFVLADFVSLVEDRRKAEGDNAMVFDGLKLMKNGYG
                     EQVSKWFNRTLLPKVLADRSGLAFHSFRHTVATQLKQHGVELAYAQAIMGHSSGSITY
                     DRYAKEVEVDRLVNVMAGVYKETGVNG"
     gene            complement(3256..3329)
                     /locus_tag="JN125_003871"
     tRNA            complement(3256..3329)
                     /locus_tag="JN125_003871"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3295..3297),aa:Gly,seq:ccc)
     gene            complement(3408..4163)
                     /locus_tag="JN125_003872"
     CDS             complement(3408..4163)
                     /locus_tag="JN125_003872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311765.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HAY8873464.1"
                     /translation="MSAGRLNKKSLGIVMLLSVGLLLAGCSGSKSSDTGTYSGSVYTV
                     KRGDTLYRISRTTGTSVKELARLNGISPPYTIEVGQKLKLGGAKSSSSTRKSTAKSTT
                     KTASVTPSSAVPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISAPRGTPIYA
                     AGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKAGQKIATMGST
                     DAASVRLHFQIRYRATAIDPLRYLPPQGSKPKC"
BASE COUNT         1006 a         1066 c         1041 g         1094 t
ORIGIN      
        1 ccccacgtaa agggagacca gcaggcaaca ggacgcaaac agaatgactt gaggtaattg
       61 gggttagtgg tctgcgatga ccatagagat gaaggttcga cagcatgtcc gagcgtgtgt
      121 ggtgatagac ttaagtcacg agaccaaaga acacacaggc tgaccagagg ctgtcttgcc
      181 ttaggctggt ggctagcttg ctagcgtgga ccacggtttc tcgcttgccg tctctcagga
      241 ggtcagaggc gagatatggt ccctatagtg atagtttagt caaacaggaa tgaacttcgg
      301 agaacttgac gcgaaagtgt tcagtacttc cagtaagacc cgaagcatgg agaccacatc
      361 atagcgacca tagtttactt cgggttggcg ggagtggagg ctggacttaa agttcttctt
      421 attggaattg tgataacaca atccataaca agataaactc atggtctcct ccagcctgct
      481 ggtcaggact caaagtccga cctcagacac cactactggt ctaacctctt tgagtttccg
      541 cctgtccaca atggatggca gacctcagca atgatgtctt ggttcttcac aatctcgcac
      601 accgatggtc tcatagacgg aagttccgct gaggtctgat gttctccgcc tgtcaaagga
      661 gagagattgc tacgttaaag ggaatggtct caggccaagg tgatttaaca ctaggcttat
      721 tgcggatggt ttccaatcgg tccgctaccg gaagcctgag atttaatgaa tgtgtgggtc
      781 ggtggctgta ttaagccggg gggacttagg gtctctccct atagtgatag tttagtcccc
      841 cttcccccta tagtgtgggt tttattcatt agcagcctgc tgctgttccc tcgcctgtct
      901 gtcctgattc tcaatacctt ggcgtggacc ttcaggcata ctctggaaca tagcctcaat
      961 ttctttcggt ctggtaatct gctcagtgac aataatgttc aacagcttaa agagaccatg
     1021 tgccaactgt gggtcgtcat caaggctaat ctctcctgga tggaccgcct gattgccaac
     1081 gatacgacag atgtctgctg cctgctgaat gcgtacaggt agtcctttct ggacgagtga
     1141 ccgaatgtca gcattaatgt tgtttcccgg ttcgcctaag tggaccatta gcttttggag
     1201 gcaaagacga aggagtgctg ctgcgccttt aggagacaga ttaatgatgc ttctagcttc
     1261 catatagtct gacttgcagt catcgggcat gtctgggttt gggagttcaa cattgccagc
     1321 cgcagggatc aacatgttgc cctgatacca ataggcatct tcaccacaat gagagcatgt
     1381 tgacattcgg aactcagttg atttgaccgc aagcacattc gaattaccat acatactacg
     1441 ccagaactga cgggcatata caccgcagtg agggcaatta aaagcttctg cttcaaacac
     1501 cgccggataa tactcagcca tttactccag tctccttata aacaccagcc atcacattaa
     1561 ccaatctatc tacctcaacc tctttcgcgt aacggtcgta agttatggac ccgctcgaat
     1621 ggcccataat cgcctgagca tacgctaact cgaccccatg ttgttttaac tgggtcgcaa
     1681 cagtatgtct aaacgagtga aacgctaagc cgctacggtc agcaaggact ttaggtagca
     1741 acgttcggtt aaaccatttg ctcacctgct caccgtagcc gttcttcatc agcttgaggc
     1801 catcgaatac catagcatta tcaccctcag cctttctacg gtcttccaca agcgacacaa
     1861 agtcagccaa tacaaaacca taagcgccat cgaccagcgg gacacagcgg tcgctatgcg
     1921 cattcttaac gctcttaccc ggcaggctgc tatcgtcttc gttaatgtgg atatacacgg
     1981 tcccggcctc agtgaccctg acgtctttga cctgaagttg ggccacctcg ttaagtcttg
     2041 ctccagtgat cgcagccaga gcggtgacgt aataatggta tggcttacct gcggtcttct
     2101 gagagtacgc tttagcggcg accagtagtt gccctacctg ctcaggactg aacgcatcac
     2161 gagcgtcgga ggctttacgc tgcgggactt tcagctcaag accttcggtc aggttcttag
     2221 ctatcaagtc gttgcgtacc gcccacttaa acacagcagc catcttgata agatatttat
     2281 tgttgatggt aacgacatcc aaacagtcag tcttagactc ccggttcagc aggtcagaca
     2341 gcggcataga cttaaagcgt tgcttgcggt tcttcggtat ctgctggagg acttcacgga
     2401 ccctgagcat atctgaacgg gtcgccttgc cgacatcctg aatatccaga tagtcgaata
     2461 tctcgattag cgtggagtgc gacgctcggt tctcgcttag ggtcgctggc ttccagttct
     2521 gggcgttctc ctgctcgtac tgctcaatga gagacgcgag ggtaagagct ttaggttcgg
     2581 ggacttcagg atctgccaat acagataggg agacggacgg tcttagacta ctggtctcag
     2641 gctcaaggta agacaacagg ccagagctat cacccctgag tctgtcctga caggccttaa
     2701 gcacaccgat aacgtcattg atatagcgat gctggtctac agtcagacgc tcagtcgcta
     2761 cagcttcccg aaggttggac ttaatgtcat cgtactggtc aacgtaaagc tggtaggact
     2821 ctgggtcgtt caggtcatca cggctgacac taagctccca ctcgacaatg gtcttcaggt
     2881 gctcccgtag ctcctcataa gaggcgttag ggttatctgc gtggattgct ttaagtgctg
     2941 acttgatgtg ccgtgagtga gccatagcgg tgcgtctgtc cttagtccgt agtgatactg
     3001 acgctagttt ataacggtta tgagagggaa gcgaagcggt caggcgacca gtgctcttca
     3061 ttctaagacg gatgtaaaag acaccgttac gctgataaag gtaggttctt gagttgagca
     3121 tgtactgaga ccttaggtct gctcactact tcaacaaagt tagtcacagt gttggttaca
     3181 gtgagtaaaa ctctcggaag gctttaagcc gtatccctta ggattcagta agttattgaa
     3241 ctttaagaag tgtcatggag cgggcgaagg gaatcgaacc ctcgtataga gcttgggaag
     3301 ctctcgttct accattgaac tacgcccgct tcgagatgcg taaggcatta taaaccttac
     3361 gctctcctta gcaagtgccg cgctgctgac tgctgattaa ttcgccatca gcattttggc
     3421 ttgctgccct gcggcggcaa gtaacgtagc ggatcaattg ccgttgctcg gtaacgaatc
     3481 tggaaatgca ggcgaacaga tgccgcatcc gtgctcccca tagtggcgat tttttgccca
     3541 gccttcacgc tttgcccatt atttaccagc atcgtgtcat tatgggcgta agccgtaatg
     3601 taatcttcac tgtgtttaat catgatgaga ttaccgtagc cacgcagctg gttgcccaca
     3661 tacaccacct ttcctgcacc cgcggcgtaa ataggtgtac cccgtggagc tgagatatca
     3721 atccctttat tgccgccatc tgctgtcgaa tacggcatga taactttccc tgtcgttggc
     3781 cataaccaac aacgttgccc tactggcggc caggaagatt tcggtaccgc tgatgacggt
     3841 gtaaccgatg cggttttggt cgttgatttg gcggttgatt tacgtgtact actgctactt
     3901 ttcgccccac ccagttttag tttctgacca acttcaatgg tgtaaggggg ggaaatgccg
     3961 ttcagtcgcg ccagttcttt tacgctggtt cccgtggtgc gcgaaatacg atatagcgta
     4021 tccccccgtt tcacggtgta aacggagccg gaatacgttc ctgtatcgga tgatttgcta
     4081 cccgaacagc ccgccaaaag cagtccaacc gataacaaca tcacgatacc cagagatttt
     4141 ttattcaggc gtcccgcact caaaatcttt cctcgcttaa aaaacaagac gccttatcat
     4201 agcagcc
//
LOCUS       DADMHM010000257         4203 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.262, whole genome shotgun sequence.
ACCESSION   DADMHM010000257 DADMHM010000000
VERSION     DADMHM010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4203)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4203)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4203
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.262"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            112..615
                     /gene="yeaK"
                     /locus_tag="JN125_003873"
     CDS             112..615
                     /gene="yeaK"
                     /locus_tag="JN125_003873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mischarged aminoacyl-tRNA deacylase"
                     /protein_id="HAY8873465.1"
                     /translation="MTEMAKGSVTHQRLIALLSQEGANFRVVTHEAVGKCEAVSEIRG
                     TALGQGAKALVCKVKGNGVNQHVLAILAADQQADLSQLASHIGGLRASLASPAEVDEL
                     TGCVFGAIPPFSFHPKLKLVADPLLFERFDEIAFNAGMLDKSVILKTTDYLRIAQPEL
                     VNFRRTA"
     gene            complement(616..720)
                     /locus_tag="JN125_003874"
     CDS             complement(616..720)
                     /locus_tag="JN125_003874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416302.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873466.1"
                     /translation="MNDQMFVETLIITSSFFAIAVVLVLSVLLIERTG"
     gene            889..1335
                     /locus_tag="JN125_003875"
     CDS             889..1335
                     /locus_tag="JN125_003875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF441 domain-containing protein"
                     /protein_id="HAY8873467.1"
                     /translation="MFDVTLLILLGLAALGFISHNTTVAVSILVLIIVRVTPLSTFFP
                     WIEQQGLSIGIIILTIGVMAPIASGTLPPSTLIHSFLNWKSLVAIAVGVIVSWLGGRG
                     VTLMGSQPQLVAGLLVGTVLGVALFRGVPVGPLIAAGLVSLIVGKQ"
     gene            complement(1292..2113)
                     /locus_tag="JN125_003876"
                     /pseudo
     CDS             complement(1292..2113)
                     /locus_tag="JN125_003876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416304.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
     gene            2210..3406
                     /gene="nimT"
                     /locus_tag="JN125_003877"
     CDS             2210..3406
                     /gene="nimT"
                     /locus_tag="JN125_003877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005117270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-nitroimidazole transporter"
                     /protein_id="HAY8873468.1"
                     /translation="MTCSTSLSGKNRIVLIAGILMIATTLRVTFTGAAPLLDTIRSAY
                     SLTTAQTGLLTTLPLLAFALISPLAAPVARRFGMERSLFAALLLICAGIAIRSLPSPY
                     LLFGGTAVIGGGIALGNVLLPGLIKRDFPHSVARLTGAYSLTMGAAAALGSAMVMPLA
                     LNGFGWQGALLMLMCFPLLALFLWLPQWRSQQHANLSTSRALHTRGIWRSPLAWQVTL
                     FLGSNSLVYYVIIGWLPAILISHGYSEAQAGSLHGLLQLATAAPGLLIPLFLHHVKDQ
                     RGIAAFVALMCAVGAVGLCFMPAHAITWTLLFGFGSGATMILGLTFIGLRASSAHQAA
                     ALSGMAQSVGYLLAACGPPLMGKIHDANGNWSVPLMGVAILSLLMAIFGLCAGRDKEI
                     RSYPVL"
     gene            3446..3793
                     /locus_tag="JN125_003878"
     CDS             3446..3793
                     /locus_tag="JN125_003878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310528.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF488 domain-containing protein"
                     /protein_id="HAY8873469.1"
                     /translation="MNIQCKRVYDPAEQSDGYRVLVDRLWPRGIKKTDLALDEWDKEI
                     TPSTELRKAFHGEVVDFTTFREQYLAELAQHEQEGKRLADIAKKQPLTLLYAAKNTTQ
                     NHALVLADWLRSL"
     gene            complement(3815..4069)
                     /gene="yoaF"
                     /locus_tag="JN125_003879"
     CDS             complement(3815..4069)
                     /gene="yoaF"
                     /locus_tag="JN125_003879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF333 domain-containing lipoprotein YoaF"
                     /protein_id="HAY8873470.1"
                     /translation="MKIISFVLPCLLVLAGCSTPSQPEAPKPPQIGMANPASVYCQQK
                     GGTLIPVSTAQGVSNNCKLPGGETIDEWALWRRDHPAGEK"
BASE COUNT          968 a         1065 c         1040 g         1130 t
ORIGIN      
        1 catgatgcgt ataaagcttc cgatgagcgt ttatatgtca ataagcagaa caaaaacagc
       61 cgttcatgat aaccttctgt ggttgtttgc ttgtaatctc aggagcgtga aatgactgaa
      121 atggctaaag gaagcgtgac gcatcagcgg ttaatcgctt tattatcaca agaaggtgct
      181 aacttccgcg tcgttaccca tgaagcggta ggtaaatgtg aagcggtgtc agaaattcgt
      241 ggcaccgctt taggccaggg agctaaggca ctggtatgta aagtcaaagg caatggcgta
      301 aatcaacatg ttctggcgat cctcgctgcc gatcaacagg ccgatctgag ccaacttgcc
      361 agccatatag gcggattacg cgcttcgtta gccagccctg ctgaagtcga tgaactcaca
      421 ggctgtgtct tcggcgcgat cccccctttc agcttccatc caaaactcaa actggttgcc
      481 gaccctctac tcttcgaacg atttgatgaa atcgccttca atgcagggat gctggataaa
      541 tccgttattt tgaaaaccac ggattatttg cgcattgcgc aaccagaact ggtcaatttc
      601 cgccgcactg cgtaactagc ctgtccgttc aataagcaga acggacaaaa ccagcacaac
      661 agcaatggca aaaaacgatg acgtgataat cagtgtctcg acgaacattt gatcgttcat
      721 agcatgcccc cgggagatag ctgttttcac gttattgtta gcgtgcacaa atggcagttt
      781 gatgacagtt cgcctgattt ttatgcaaaa aacgtaaaga ttttctactt ccttcctgca
      841 gcaagcgtaa agtaagcagg cttattattt tttggcaagg aaaccacgat gtttgatgtc
      901 actttgctga tcctgctcgg gttagctgcg ctgggcttta tcagtcataa caccactgtc
      961 gccgtttcaa ttctggtgtt gatcattgtc cgcgtcacac cgttaagcac ctttttcccg
     1021 tggattgaac aacaggggct aagtatcggg ataatcattc tgacgattgg cgttatggcc
     1081 cccatcgcca gcgggacgct accgccctca accttgattc actcgtttct gaactggaaa
     1141 tcgctggtag caattgcagt aggcgtgatt gtctcctggc tgggtgggcg cggcgtgacc
     1201 ttaatgggca gccagccgca actggtcgcc gggctgctgg taggcactgt tttaggcgtg
     1261 gcgctgtttc gcggcgtacc ggtcggcccg cttattgccg cgggtctggt ttcgctgatt
     1321 gtggggaaac agtagttaat cccgcaatat atcggcctgg cgtttgcccc aggcctttct
     1381 taaacatagt aataaaggcc gttgttgaat cataccccag cgtatgagca actttctgta
     1441 cagtatcgcc tttcactaat ccctgaagtg ccataatcag ctgtaactgc tgacgtcact
     1501 ggcgaaaact caaccccgtc tcttttacta tcagtcgcgc aagattgcgt tcactcatcg
     1561 caaaaaagcc agcccattgc cctaatgacc cccactcgac gggccctttc gccatcatct
     1621 ccaccatcgt gcggatttta ggatgagaag aaacgggcag gtgcagctgt tgttgtggct
     1681 gctgagggag ttcatcaaac aggacctgta ttaatctgcg ggtcatcggc tcagcacgct
     1741 gagtcgtcgt cctgtttgcc agggttaaaa tcaattcccg gcataagggc gatattttca
     1801 atgtgcaaca tgttgtcggc attgtcactg cgctgggttc gataaacaga aaacagagtt
     1861 cagcgttagc tgtcacttga ttgctatgtt ccaccccgcc cggtatccaa accgcatatt
     1921 gcggcggcac catccacaaa gcattttcca ccgtacaggt aattgcacca tgtaatgcta
     1981 gtatcagctg tcctttgcgg tgctgatgta caggactggt taactcatcc gttccggcgt
     2041 gaatacaaaa tgcgaccgcg gcttcatggt gtcggtcggg ttcatagcca ttgagattca
     2101 acctgtgcat cattttgtcc gaatttagcg ataatttgtc attttagctt gattcaacat
     2161 aacaataaaa acggtaaggt acagcctcgt ttgtaacaat gagaagcata tgacctgttc
     2221 aacttcatta agcggcaaaa acaggattgt ccttatcgct ggcattctga tgattgccac
     2281 aacattacgc gtcaccttta ccggcgcagc accgttactg gatacgattc gttccgctta
     2341 ctcgctgacg acagcgcaaa ccggcttatt gaccaccctg ccattattgg cctttgcgct
     2401 aatctcacct ttggccgccc cggtagcgcg acgttttggt atggaacgta gcctgtttgc
     2461 cgcgttactt ttgatctgtg ctggtatcgc aattcgctct ctcccttcgc cttacttatt
     2521 atttggcggt acagcggtca ttggcggtgg gattgcatta ggcaatgtct tactgccagg
     2581 attaattaaa cgcgatttcc ctcattccgt cgccagactt accggcgcat attccctgac
     2641 aatgggagct gcggcggcac ttggatcggc tatggtaatg ccgctggctt tgaacggttt
     2701 tggctggcaa ggcgcgttgc tcatgctgat gtgttttcct ctgctggctc tttttttatg
     2761 gctgccacag tggcgaagcc aacaacatgc aaatttgagt acctcgcgcg ccttacatac
     2821 tcggggtatc tggcgttcgc cgcttgcctg gcaggtcaca ttgtttcttg ggagcaactc
     2881 actggtctat tacgtgatta ttggctggct tccggcgatc ctcatcagtc acggctatag
     2941 cgaagcacag gcgggttcac tgcatggttt gctgcaacta gccacagcag ctcccggttt
     3001 gctgatccct cttttcttac atcatgtgaa agaccagcgt ggtattgcag cgttcgttgc
     3061 cttgatgtgc gcagtgggcg ctgttgggct ctgctttatg ccagcgcacg cgatcacctg
     3121 gactctgctt ttcggttttg gttccggcgc aacaatgata ctggggttga cgttcattgg
     3181 tcttcgggca agttctgcgc atcaggcggc ggcactctcg gggatggcac aatccgtcgg
     3241 gtatttgctg gcagcctgtg ggccgccgct aatgggtaaa atacacgatg ctaacggtaa
     3301 ctggtccgta ccactgatgg gtgttgcaat actttcacta ctgatggcga ttttcggact
     3361 ttgcgccggg agagacaaag aaattcgctc atatccggtg ctatagtgac gtgacaaatc
     3421 atgcgtgaaa gggagaacaa acacgatgaa tattcagtgc aaacgcgttt atgatccggc
     3481 tgaacagagc gatggttatc gcgtactggt cgaccgcctc tggccgcgcg gtatcaaaaa
     3541 aaccgattta gcccttgatg agtgggataa agaaatcacg ccgtcaacgg aactgcgcaa
     3601 agcctttcac ggcgaagtcg tcgattttac aacctttcgc gagcaatatc ttgcagaact
     3661 ggcgcaacac gagcaagaag gaaagcggct ggcggacatc gccaaaaaac agccgctgac
     3721 cctgctctac gcagcaaaaa acaccacgca gaaccatgcg ctggtgctgg ccgactggct
     3781 acgtagcttg tgattttagt acagcatccg gcggttattt ttcaccagcc ggatggtccc
     3841 gtcgccacaa tgcccattca tcaatcgttt caccgcccgg taatttgcaa ttgttgctga
     3901 ccccttgcgc tgtcgacact ggaatgagcg tcccgccctt ctgctggcaa tagaccgacg
     3961 ccggatttgc cataccaatc tgcggcggtt taggtgcttc tggctgagaa ggggttgaac
     4021 aaccagccag gaccagcaag caaggcagaa caaaactgat aattttcatt tattgatctc
     4081 acatatttat ccagacttag agtatcgcgg tatcgttttg ttttgcagca ctatttttat
     4141 tacattcact caaaacatat tacgtcttgt ttcatctttg ttgatgatgt tttatcatgc
     4201 ctg
//
LOCUS       DADMHM010000258         4122 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.263, whole genome shotgun sequence.
ACCESSION   DADMHM010000258 DADMHM010000000
VERSION     DADMHM010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4122)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4122)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4122
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.263"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(100..924)
                     /gene="kduI"
                     /locus_tag="JN125_003880"
     CDS             complement(100..924)
                     /gene="kduI"
                     /locus_tag="JN125_003880"
                     /EC_number="5.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-4-deoxy-D-glucuronate isomerase"
                     /protein_id="HAY8873471.1"
                     /translation="MDVRQSIHSAHAKTLDTQGLHNEFLVEKVFVADEYTMVYSHIDR
                     IIVGGIMPITKTVSVGGEVGKQLGVSYFLERRELGVINIGGAGTITVDGQCYEIGHRD
                     ALYVGKGAKEVVFASIDTAIYYNCAPAHTTYPTKKVTPDEVSPVTLGDNLTSNRRTIN
                     KYFVPDVLETCQLSMGLTELAPGNLWNTMPCHTHERRMEVYFYFNMDDDACVFHMMGQ
                     PQETRHIVMHNEQAVISPSWSIHSGVGTKAYTFIWGMVGENQVFDDMDHVAVKDLR"
     gene            complement(1211..2392)
                     /locus_tag="JN125_003881"
     CDS             complement(1211..2392)
                     /locus_tag="JN125_003881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708633.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA C-acetyltransferase"
                     /protein_id="HAY8873472.1"
                     /translation="MKDVVIVGALRTPIGCFRGALAGHSAVELGSLVVKALIERTGVP
                     AYAVDEVILGQVLTAGAGQNPARQSAIKGGLPNSVSAITINDVCGSGLKALHLATQAI
                     QCGEADIVIAGGQENMSRAPHVLTDSRTGAQLGNSQLVDSLVHDGLWDAFNDYHIGVT
                     AENLAREYGISRQLQDAYALSSQQKARAAIDAGRFKDEIVPVMIQSNGQTLVVDTDEQ
                     PCTDASAEGLARLNPSFDSLGSVTAGNASSINDGAAAVMMMSEAKARALNLPVLARIR
                     AFASVGVDPALMGIAPVYATRRCLERVGWQLADVDLIEANEAFAAQALSVGKMLEWDE
                     RRVNVNGGAIALGHPIGASGCRILVSLVHEMVKRNARKGLATLCIGGGQGVALTIERD
                     E"
     gene            2647..3876
                     /locus_tag="JN125_003882"
     CDS             2647..3876
                     /locus_tag="JN125_003882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease"
                     /protein_id="HAY8873473.1"
                     /translation="MSNIWSKEETLWSFALYGTAVGAGTLFLPIQLGSAGAVVLFITA
                     LVAWPLTYWPHKALCQFILSSKTSAGEGITGAVTHYYGKKIGNLITTLYFIAFFVVVL
                     IYAVAITNSLTEQLAKHMVIDLRIRMLVSLGVVLILNLIFLMGRHATIRVMGFLVFPL
                     IAYFLFLSIYLVGSWQPDLLTTQVEFNQNPLHQIWISIPVMVFAFSHTPIISTFAIDR
                     REKYGEHAMDKCKKIMKVAYLIICISVLFFVFSCLLSIPPSYIEAAKEEGVTILSALS
                     MLPNAPAWLSISGIIVAVVAMSKSFLGTYFGVIEGATEVVKTTLQQVGVKKSRAFNRA
                     LSIMLVSLITFIVCCINPNAISMIYAISGPLIAMILFIMPTLSTYLIPALKPWRSIGN
                     LITLIVGILCVSVMFFS"
BASE COUNT         1091 a         1014 c          884 g         1133 t
ORIGIN      
        1 cggtggccag tttttgttga ccacttcaga ccgcaacttt accttcgaga gaaaatgcac
       61 ttaaaatcat aacaatacct tattcgttta tgcccacaac tagcgcaaat ctttaacggc
      121 cacatggtcc atatcatcaa agacctggtt ttcaccaacc atgccccaga taaaggtata
      181 agctttggtt ccgacgccgg aatgaatcga ccagctcggg gagatcaccg cctgctcgtt
      241 atgcatcaca atgtgacgcg tttcttgcgg ttgccccatc atgtggaaaa cgcaggcgtc
      301 atcatccata ttgaaataga aataaacttc catccggcgc tcgtgggtgt gacacggcat
      361 ggtgttccac aagttacctg gagccagctc cgtcagcccc atactcaatt ggcaggtttc
      421 cagcacatcc gggacaaaat atttgttaat agtgcgacgg ttactggtga ggttatcgcc
      481 taacgtgact ggagatactt cgtccggggt gacttttttg gtgggatacg tcgtatgcgc
      541 gggtgcgcaa ttgtaataaa tggcggtatc aatactggca aagacaactt cttttgcacc
      601 tttaccaaca tacagggcgt cgcggtgacc gatttcatag cattggccat cgacagtaat
      661 cgtaccggca ccgccaatat tgataacacc taactcgcga cgttcaagga aatagcttac
      721 gccgagttgt ttaccaactt ccccgccaac ggaaaccgtt ttagttatcg gcataatgcc
      781 gccaacaata attcggtcaa tgtggctgta aaccatggtg tactcatcgg cgacaaatac
      841 cttttcaacc aaaaattcat tgtgcagccc ttgggtatcc agcgtttttg cgtgcgcact
      901 gtggatgctc tgtcttacgt ccacatcaac ctccgataat cagtgaagcg tgaaaataga
      961 aaacgatagt gaaacactgt ttcgttttct ctataaaggg atgatatgcc catgggctag
     1021 ggttttcaat taaaaataaa acaatgtttt atttttaagt taaggattaa aaaaagtgca
     1081 gtgtcgatca cgaatatgtc atgagaatgg aaaaatgagg gagcccagaa aatgtatgtc
     1141 gacttgccag ccatcattat tcaacagatt aatgacggca gatatttatc ggtaaggagg
     1201 aaatgcagag ctactcgtca cgttcaatgg tcaatgccac gccctggccc ccgccgatac
     1261 aaagcgttgc cagccctttg cgggcattac gtttcaccat ttcatgaacc agagaaacca
     1321 ggattcggca accggaagcg cctatcgggt gaccgagtgc gatcgcgcca ccattgacat
     1381 tgacccgacg ctcatcccac tcaagcatct tgccaaccga aagcgcctgt gcagcaaacg
     1441 cttcattagc ctcgataaga tcgacatcag ccaactgcca gcctacacgc tccaggcaac
     1501 ggcgggtcgc atacaccggc gcaattccca tcaatgccgg atctacacca acgctggcaa
     1561 atgcgcggat gcgggccagc acgggtaaat tcaacgctcg tgctttggct tcgctcatca
     1621 tcattaccgc agctgcgcca tcgtttatgg atgatgcatt ccccgcggtc acagaaccga
     1681 gactatcaaa tgaaggattt aaacgggcta aaccttctgc actggcgtca gtgcatggct
     1741 gttcatcggt atcaacaacc aacgtctgac cgttactttg gatcattacc gggacgatct
     1801 catctttaaa tcgtccggcg tcaatcgccg ctcgcgcttt ttgttgcgag ctaagtgcgt
     1861 aagcatcctg caactgacgg ctgatgccat attcgcgagc cagattttcg gcggtgacac
     1921 caatatgata atcattgaag gcatcccaca acccatcatg caccagactg tcaaccaact
     1981 ggctattgcc aagctgtgca ccggtgcggc tatcagtcag aacatgtggt gcgcggctca
     2041 tgttttcctg gccaccggcg atgacaatat cagcctcgcc acactgtatc gcctgagtag
     2101 ccagatgcag tgctttaagc ccagaaccgc aaacgtcatt aatagtgatt gcagaaacgc
     2161 tattaggaag accaccttta atagccgatt gccttgccgg attctgccct gcccctgcag
     2221 tcaacacctg accaagaatt acttcatcca ccgcatatgc aggaacgccg gtacgttcta
     2281 ttaacgcttt cacgaccaaa ctaccaagtt ccacggcgga atgacccgct aacgcaccac
     2341 gaaagcagcc gataggtgtc cgtaacgccc cgacaatcac aacgtctttc atcacaacct
     2401 cgcaccaatt aacagtgcaa tagtaaatga ttgttaatta cagttatctt aattgtttaa
     2461 aaaaagtgat ttttatcaca aaggaaatat gcctgagcag cagtcagata cataactggc
     2521 acgtaaggtt tgcaaccact aacccaccaa tagaggggta gatagggcgt taatctccca
     2581 tacttaacct ggtttatggt aaattgccct ccattttgtt taatttgtag atgatatgtt
     2641 cagataatgt ctaatatttg gtctaaagaa gaaactctgt ggagtttcgc gctctacggc
     2701 acagccgttg gtgcaggcac gctcttcctt cctattcagt taggttcggc aggggctgtg
     2761 gtcctgttta ttactgctct ggtcgcctgg cctttaacat attggccaca taaagcttta
     2821 tgccagttca tcctctcatc gaaaacatca gcaggtgaag ggataacggg cgcggtaaca
     2881 cactactatg gcaagaagat tggtaatctg attaccacgc tgtacttcat cgcctttttt
     2941 gtcgtcgtgt tgatatatgc agtggcaatt accaactcac ttacagaaca gctggcaaag
     3001 catatggtta ttgatcttcg catccgtatg ttggtgagtc tgggtgttgt attaatcctg
     3061 aatctcattt ttctgatggg acgccatgca accattcggg taatgggttt tttggtattc
     3121 ccattgattg cctatttctt atttctttcc atttaccttg tcggtagttg gcaacctgat
     3181 ctattaacga cccaggtaga gttcaatcag aatccccttc accagatatg gatatcgatt
     3241 cccgtgatgg ttttcgcctt tagccatacg cccattattt ctacgtttgc catagacaga
     3301 cgtgaaaaat atggcgaaca cgctatggat aaatgcaaaa aaattatgaa agtcgcttat
     3361 ctcatcatct gcataagtgt actgttcttt gtctttagct gcctgctttc tattccacct
     3421 tcgtatattg aagcggctaa agaagaaggg gtcaccattt tatcggcgct ttctatgctg
     3481 ccgaacgccc cagcatggtt gtcaatttcc gggattattg tcgcagtagt tgcgatgtcg
     3541 aaatcattcc tgggtacgta ctttggcgtt attgaaggtg ccacggaggt cgtcaaaaca
     3601 acactacagc aggttggtgt aaagaaaagt cgtgcattta accgcgcact atcaattatg
     3661 ttggtatcgc tgattacctt cattgtttgt tgcattaacc cgaacgcgat ttcgatgatt
     3721 tatgcgatca gcggcccgct cattgccatg atacttttca tcatgcctac gttgtcaacg
     3781 tatctgatcc cggcgcttaa accctggcgc tccatcggaa atctgattac gctgatcgtg
     3841 ggtatcctgt gcgtatcggt aatgttcttt agctaatatc cgttgtggat ggttcaaaat
     3901 tgctacaatt ttgaaccatt ccatttttca taatattcat ttgttattat tccgccctat
     3961 cacttctctc gtcatatcct agaattatca gttagttaaa cacacaaaga gatctgaaca
     4021 tcttaaataa gactatttaa gatgcataac ttagattcgc aagatatctt ctggtcattc
     4081 aaaaacaatt tgcgatatag atattctcat accatgagat ag
//
LOCUS       DADMHM010000259         4109 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.264, whole genome shotgun sequence.
ACCESSION   DADMHM010000259 DADMHM010000000
VERSION     DADMHM010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4109)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4109)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4109
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.264"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(953..1144)
                     /locus_tag="JN125_003883"
     CDS             complement(953..1144)
                     /locus_tag="JN125_003883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="HAY8873474.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLYDH
                     ADELYRSCLARFGDDGENL"
     gene            1209..1532
                     /locus_tag="JN125_003884"
     CDS             1209..1532
                     /locus_tag="JN125_003884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="HAY8873475.1"
                     /translation="MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGRLPT
                     LAPPLLRQLAAIGNNLNQAARKVNSGQWSSGNRVQVVAALMAIGDELRRLRLAVREQG
                     TRDDS"
     gene            1474..2232
                     /locus_tag="JN125_003885"
                     /pseudo
     CDS             1474..2232
                     /locus_tag="JN125_003885"
                     /inference="COORDINATES: protein motif:HMM:NF015397.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            2210..2740
                     /locus_tag="JN125_003886"
     CDS             2210..2740
                     /locus_tag="JN125_003886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="HAY8873476.1"
                     /translation="MSNLLQTGAEFEKKLKERAESTEKMLNDEFRKLGESVSEAVTSN
                     ETKIKGAIAQFTASTEESLKKHREGVKEAMMQHRKDMLKLAGSSGMRLLGIVFLLFTA
                     SGGTLWYLGGRIQTNLEEIRVQEETLRKLNAKTWGVRYHEGSNGRFLVLPEGMKAETN
                     WTMENGKQNAVRLLQE"
     gene            2747..2980
                     /gene="mbeD"
                     /locus_tag="JN125_003887"
     CDS             2747..2980
                     /gene="mbeD"
                     /locus_tag="JN125_003887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="HAY8873477.1"
                     /translation="MTELERHLLNALEQLQQDYMQRLNEWESAFVELQKMFSLTQRDN
                     AMLNERVMQLSQQVQHLSEQTERLSQLYSENRR"
     gene            complement(3526..3993)
                     /locus_tag="JN125_003888"
     CDS             complement(3526..3993)
                     /locus_tag="JN125_003888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014526575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873478.1"
                     /translation="MRIDISHQTRHTPPNMLPREQNCVAMALSACFRQQLNPVVNSLL
                     KERIIHSPKELEHDNAVIRALQKLQIQEVCNSTLWETAKQQLLQKSDGRYFAINSKHL
                     AFPGPGESHAFCCIKYKNAIGINGNNAETQSTHYQPYPYDKVSIWGPFPHNLT"
BASE COUNT          966 a          944 c         1232 g          967 t
ORIGIN      
        1 aaaaaaacca ccgctaccaa cggtggtttg tttgccggaa tctagagcta ccaactcttt
       61 cttccgaagg taactggctt ggtggagcgc agataccaaa tactgtcctt ctagtgtagc
      121 cgcagttagg ccaccacttc aagaactctt aatatctcaa tccaccttgt ccagttacca
      181 atggctgctg ccagtggcgt taagtcgtgt cttaccgggt tggactcaag acgatagtta
      241 ccggataagg cgcagcggtc gggctgaacg gggggttcgt gcacacagcc cagcttggag
      301 cgaacgacct acaccgaact gagataccta cagcgtgagc tatgagaaag cgccacgctt
      361 cccgaaggga gaaaggcgga caggtatccg gtaagcggca gggtcggaac aggagagcgc
      421 acgagggagc ttccaggggg aaacgcctgg tatctttata gtcctgtcgg gtttcgccac
      481 ctctgacttg agcgtcggtt tttgtgatgc tcgtcagggg ggcggagcct atggaaaaac
      541 gccagcggcg tggccttttt ccggttcctg gtcttttgcc cacatgttct ttccggcgtt
      601 atcccctgat tctgtggata acagcatttc gtttttgagt gagtagatac cgctcgccgc
      661 agtcgaacga ccgagcgtag cgagtcagtg agcgaggaag cggaaaagcg cctggacgtg
      721 cattttctcc ttacgcatct gtgcggcatt tcacacccgg tatggcgcac ttttcataca
      781 atccgcactg atgccgcatg gttaagcctg tatacactcc gctatcgcga cgtgactggg
      841 tcatggctgc gccccgacac ccgctaacac ccgctgacgc gccctgacgg gcttgtctgc
      901 tcccggcatc cgctcacaga taagctttga ccgtctccgg gagctgcatg cgtcagaggt
      961 tttcaccgtc atccccgaag cgagcgaggc aactgcggta aagctcatcg gcgtggtcgt
     1021 aaagcgattc acagatgtct gcctgttcat ccgcgtccag ttcgttgagc ttctccagca
     1081 gcgttaatgt ctggcttctg ataaagcggg ccatgttaag ggcggttttt tcctgtttgg
     1141 tcactgatgc ctccgtgtaa gggggatttc tgttcatggg ggtaatgata ccgatgaaac
     1201 gcgagaggat gctcacgata cgggttactg atgatgaaca tgcccggtta ctggaacgct
     1261 gtgagggtaa acagctggcg gtatggatgc ggcgggtctg cctgggtgag ccggttgccc
     1321 gttccgggag gctgccgaca ctggcaccgc cgttactgcg tcagctggcc gccatcggga
     1381 ataacctgaa tcaggcagcg aggaaggtga acagcgggca gtggtcttcc ggtaaccggg
     1441 ttcaggtggt ggccgcactg atggccatcg gggatgagct gcgccggctg cgtctggccg
     1501 tcagggaaca ggggacgcgg gatgatagtt aagtttcatg cccggggaaa aggcggtggc
     1561 cgtggtccgg ttgattacct gctgggaagg gagcgtaacc gggaaggggc aacggtgctt
     1621 cagggtaatc cggaagaagt ccgggaactc atcgatgcca cgccatttgc gaagaaatac
     1681 acgtccggtg ttctctcgtt cgcggagaag gcgctgccag cgggaggacg tgaaaaagtg
     1741 atggcgagtt ttgagcgtgt actgatgccc ggtctcgaaa aaaatcagta cagcatcctg
     1801 tgggtggagc accaggacaa gggacggctt gagctgaatt ttgttattcc gaacatggag
     1861 ctgcagaccg gaaaacgcct tcagccgtac tacgaccggg cagacaggcc gagaattgat
     1921 gcctggcaga cgctggtgaa tcaccattac gggctgcatg acccgaacgc cccggagaat
     1981 cgccggacgc tgacactccc tgataacctg ccggaaacga aacaggtgct tgctgagggc
     2041 gttactcgtg ggatagacgc actttaccat gccggagaga taaaaggccg tcaggatgtg
     2101 attcaggcgc tcacagaggc ggggcttgaa gtggtcaggg tgacgcgaag cagtatcagc
     2161 attgcagacc cgaacggcgg gaggaacatc agactgaaag gagcgtttta tgagcaatct
     2221 tttacagacg ggcgcggagt tcgagaaaaa gctgaaagag agagccgaat ctacagagaa
     2281 aatgctgaac gacgaattca ggaagctcgg cgaatctgta agcgaggctg tgacctcaaa
     2341 cgagacgaaa atcaaaggcg ctatagccca gtttacggcc tcgacggagg aatcgctgaa
     2401 aaaacaccgg gaaggggtga aagaggcgat gatgcagcac cggaaggaca tgttaaagct
     2461 ggcagggagt tcgggtatga ggttgctggg gatagtcttt ctcctgttta ccgcgagtgg
     2521 tgggacgctc tggtatctcg gcgggaggat acagacgaac ctggaagaaa tcagggtaca
     2581 ggaagagaca ttgcggaaac tgaacgcgaa gacatggggc gtgcgttatc acgaggggag
     2641 caacggacgt tttctggttt tgcccgaggg gatgaaagcc gaaacgaact ggacgatgga
     2701 aaacgggaaa cagaatgccg taaggctgct acaggagtaa cagagcatga cggagctgga
     2761 aagacatttg ctgaacgcat tagagcaact gcaacaggac tatatgcagc ggctgaacga
     2821 atgggagagc gccttcgtgg aattgcagaa aatgttttcg cttacgcaac gggacaacgc
     2881 gatgctgaat gagcgggtca tgcagttgag tcagcaggtg cagcacttga gcgagcagac
     2941 agaacgcttg agccagttat acagcgagaa caggagataa gggacgaacg gctgatacag
     3001 gaacgcgaac atgcgttatc cctggagcgt gagcgccagc tggaaataca ggaacggaca
     3061 ctggatggcc cttcgctggg atggtaatca gagacaggct aaaatgttgt cagcgcgttt
     3121 ccggtgcatt ttttgggata atggttggtt cgggggcacc gggaacgcgc ttcagtcaga
     3181 ccttgctgaa aacacaggaa cgcgttaaaa cgcatacggg cgcgattctg gtgtgtcttt
     3241 tgttgctgtg ttttgcctct attgccagat cgcgctcatt cccctgaact tctgttttcc
     3301 cgctcagatc cccgtcttct tcgcttccga aagcatgaaa aaaatccgtt tcagctgtct
     3361 ctggctggca attcctgcgt gattcacatg gctgcatagc tatgcatgtg gttaaaattt
     3421 accgggtgcg atcgcggcag tttttcgggt ggtttgttgc catttttacc tgtctgctgc
     3481 cgtgatcgcg ccgaacgcgt ttcagcggtg cgtacaatta agatattacg ttaaattgtg
     3541 agggaatggt ccccatatac tgactttatc atagggatag ggttggtagt gggtcgattg
     3601 ggtttcggca ttgtttccgt taatgccaat tgcatttttg tatttgatgc aacagaaggc
     3661 gtgagattct cctgggcctg gaaaggctaa gtgtttagaa ttgatggcaa aatatcttcc
     3721 gtccgatttt tgaagtagtt gttgtttggc tgtctcccaa agggtgctgt tacaaacttc
     3781 ttgaatttgt agtttttgca gggctcttat tactgcgttg tcatgttcca attctttagg
     3841 ggagtgtatt attctctctt ttaataagct gtttaccaca gggtttagtt gttgtctaaa
     3901 gcacgcagat aatgccattg ctacacaatt ttgttcccga ggaagcatgt ttggcggggt
     3961 atgccgtgtt tgatgtgata tgtctattct catagaaggt ctctggctta tagcatcaac
     4021 aaatacggct ataaaacaaa attttcatag agtgattcaa gatcttcttg agatcctttt
     4081 ttgcggcgcg taatctgctg cctgcaaac
//
LOCUS       DADMHM010000260         4097 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.265, whole genome shotgun sequence.
ACCESSION   DADMHM010000260 DADMHM010000000
VERSION     DADMHM010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 4097)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4097)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4097
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.265"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            49..948
                     /locus_tag="JN125_003889"
     CDS             49..948
                     /locus_tag="JN125_003889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY8873479.1"
                     /translation="MKREEIADLMAFVVVAEERSFTRAAARLSMAQSALSQIVRRIEE
                     RLGLRLLTRTTRSVVPTEAGEHFLSVLGPMLHDIDSALASLSELQNRPSGTIRITTVE
                     HAAKTILLPAMRTFLKSHPEIDIQLTIDYGLTDVVSERFDAGVRLGGEMDKDMIAIRI
                     GPDIPMAIVGSPDYFSRRSVPTSVSQLIDHQAINLYLPTSGTANRWRLIRGGREVRVR
                     MEGQLLLNTIDLIIDAAIDGHGLAYLPYDQVERAIKEKKLIRVLDKFTPDLPGYHLYY
                     PHRRHAGSAFSLFIDRLKYKGAV"
     gene            1285..2898
                     /locus_tag="JN125_003890"
     CDS             1285..2898
                     /locus_tag="JN125_003890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415845.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HAY8873480.1"
                     /translation="MKHSVSVTCCALLVSSISLSYAAEVPSGTVLAEKQELVRHIKDE
                     PVSLDPAKAVGLPEIQVIRDLFEGLVNQNEKGEIVPGVATQWKSNDNRIWTFTLRDNA
                     KWADGTPVTAQDFVYSWQRLVDPKTLSPFAWFAALAGINNAQAIIDGKATPDQLGVTA
                     VDAHTLKIQLDKPLPWFVNLTANFAFFPVQKANVESGKEWTKPGNLIGNGAYVLKERV
                     VNEKLVVVPNTHYWDNAKTVLQKVTFLPINQESAATKRYLAGDIDITESFPKNMYQKL
                     LKDIPGQVYTPPQLGTYYYAFNTQKGPTADQRVRLALSMTIDRRLMTEKVLGTGEKPA
                     WHFTPDVTAGFTPEPSPFEQMSQEELNAQAKTLLSAAGYGPQKPLKLTLLYNTSENHQ
                     KIAIAVASMWKKNLGVDVKLQNQEWKTYIDSRNTGNFDVIRASWVGDYNEPSTFLTLL
                     TSTHSGNISRFNNPAYDKVLAQASTENTVKARNADYNAAEKILMEQAPIAPIYQYTNG
                     RLIKPWLKGYPINNPEDVAYSRIMYIVKH"
     gene            complement(2949..3980)
                     /gene="ynaI"
                     /locus_tag="JN125_003891"
     CDS             complement(2949..3980)
                     /gene="ynaI"
                     /locus_tag="JN125_003891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low conductance mechanosensitive channel YnaI"
                     /protein_id="HAY8873481.1"
                     /translation="MIAELFTNNALNLVIIFGSCAALILMSFWFRRGNRKRKGFLFHA
                     VQFLIYTIIISAVGSIINYVIENYKLKFITPGVIDFICTSLIAVILTIKLFLLINQFE
                     KQQIKKGRDITSARIMSRIIKITIIVVLVLLYGEHFGMSLSGLLTFGGIGGLAVGMAG
                     KDILSNFFSGIMLYFDRPFSIGDWIRSPDRNIEGTVAEIGWRITKITTFDNRPLYVPN
                     SLFSSISVENPGRMTNRRITTTIGLRYEDAAKVGVIVEAVREMLKNHPAIDQRQTLLV
                     YFNQFADSSLNIMVYCFTKTTVWAEWLAAQQDVYLKIIDIVQSHGADFAFPSQTLYMD
                     NITPPEQGR"
BASE COUNT         1148 a          896 c          964 g         1089 t
ORIGIN      
        1 gattagacct atcatttaaa tgattaatag attgcatgga gatactgaat gaagcgtgaa
       61 gaaatcgctg atctgatggc gtttgtcgtc gttgcagagg agcgtagctt cactcgtgca
      121 gcagcccgcc tgagcatggc gcagtcagct ttaagccaga tagtgcgtcg tatagaagaa
      181 cgattgggat tgcggcttct gacgcgaacc acgcgcagcg ttgttccaac tgaagcgggc
      241 gagcattttt tgtctgttct tggccctatg ttgcatgaca tagattcagc cctggcatcc
      301 ctgagcgagc tgcagaaccg cccatccggg acaatacgta ttactactgt agaacatgca
      361 gcaaaaacga tattgttacc agcaatgcgc acattcctga aatcgcatcc tgaaattgat
      421 attcagctca ccattgatta tggtttgacc gatgtcgttt ctgaacgttt tgatgcaggc
      481 gtccgtctgg gtggggagat ggataaagat atgatcgcca ttcgaatcgg gccagatata
      541 ccaatggcta ttgttggctc accggattat ttttctcgcc gaagtgttcc aacgtcagtg
      601 tcacaattaa tagatcatca ggcaattaat ttgtatcttc ccacatcggg tacagcaaat
      661 cgctggagat taatacgcgg tggacgtgaa gttcgtgttc gcatggaagg tcagctttta
      721 ctgaatacga tagacctgat cattgatgct gcaattgatg ggcatggatt ggcgtatcta
      781 ccttatgatc aggttgagcg ggctattaaa gaaaaaaaac tgatacgtgt tttggataaa
      841 ttcacaccag atttacccgg ttatcacctg tactatccac accgtcgaca tgctggctcg
      901 gcattctcat tatttataga taggctgaag tataaaggtg ctgtttagca ctacttgctg
      961 atacattaat ttaatttctc tcttaacgta ttctcagttc ctttcaacgt tttggttatt
     1021 ttttattctt cgtacaatgg cgacagatgc tgattttgat accgaaaact ggtttgaacg
     1081 tgcgaagcct gaacgtagtg ttcggtgttc tatgtgcttt gccgcatttt ggcgtcgatt
     1141 atttacacta aatctgattt aatatattga tacataaaat attttatgct tcctgtgtca
     1201 cttttttgat ggaagttgtt tgcatttctt taaggcgaaa caaataatta cgcatcaatt
     1261 ttaatgtcgg ttagagggaa acttatgaag cactctgttt cagtcacgtg ttgtgcgctg
     1321 ttggtcagca gcatttctct ttcgtatgct gcagaagttc cgagcggcac agtactggca
     1381 gagaagcagg agctggtgcg ccacattaaa gatgagcctg tgtcgctgga tcccgctaaa
     1441 gccgtgggcc tgccagagat tcaggtcatt cgcgatctgt ttgaaggact ggtgaatcag
     1501 aacgagaaag gggagattgt ccccggcgtt gcgactcagt ggaaaagtaa tgacaaccgt
     1561 atctggactt ttaccctgcg cgataacgca aaatgggcgg atggcacacc ggtaacggcg
     1621 caagattttg tctacagctg gcagcgtctg gtggacccga aaacgctatc gccatttgca
     1681 tggtttgccg cgctggcggg aatcaacaac gcacaggcga ttattgatgg taaagctacg
     1741 cctgaccagc ttggcgtcac cgcagttgat gcccatacct tgaaaattca gcttgataaa
     1801 ccgttgccgt ggtttgtgaa tttaaccgct aactttgcct tcttcccggt gcaaaaagcc
     1861 aacgtagaaa gcggtaaaga gtggacgaaa cccggaaatc tgatcggcaa tggcgcttat
     1921 gttcttaaag aacgcgtagt caatgaaaaa ctggtcgtgg taccgaatac ccattattgg
     1981 gataacgcca aaacggtact gcaaaaagtg accttcctgc caattaatca ggaatccgca
     2041 gccactaagc gttacctcgc gggggatatt gatatcaccg aatccttccc gaaaaatatg
     2101 tatcagaagc tgttgaagga tattccgggg caggtttata cgccgccgca gctcgggacc
     2161 tattattatg cgtttaacac gcaaaaaggg ccgacggcag atcagcgcgt tcgcctggca
     2221 ttaagtatga cgatagatcg ccgcctgatg accgaaaaag tgttgggaac gggcgaaaag
     2281 ccagcgtggc attttacacc agatgttacc gccggattta cgccggaacc ttcgccgttt
     2341 gaacaaatga gtcaggaaga actgaatgcg caggcaaaaa ctttgttgag cgcagctggt
     2401 tatggtccgc aaaaaccgct gaagctgacg cttttgtata acacttcaga aaaccatcaa
     2461 aaaattgcga ttgctgtagc atcgatgtgg aaaaagaacc ttggcgtaga tgttaaattg
     2521 caaaatcagg aatggaaaac ctatatcgat agccgtaaca ccggcaattt tgatgttatc
     2581 cgcgcctcat gggtggggga ttataatgaa ccctccactt tcctgacatt attaacgtca
     2641 acgcattcag gaaatatttc acgctttaac aatccggcat acgacaaagt tctggcccag
     2701 gcatcgacgg aaaataccgt taaagcgcgt aatgccgatt acaacgcggc agaaaaaatc
     2761 ctcatggagc aagcaccgat tgcaccaatt tatcaatata ccaatggacg attaatcaag
     2821 ccgtggctga aaggttatcc cattaataac ccggaagatg tggcgtacag ccggattatg
     2881 tatattgtga agcattgatg tgatgggaac tggcgttacc cttgtggata acgccagtga
     2941 tgtctgattt agcgcccctg ttccggcggt gtaatgttat ccatatacag cgtctggctg
     3001 gggaaggcaa agtccgcgcc gtgtgactgc acaatatcga taatcttcaa ataaacgtct
     3061 tgttgtgcag caagccattc agcccatacc gtggttttgg taaagcaata aaccataata
     3121 ttcaatgacg agtcggcaaa ctggttgaaa taaaccagta aggtttgtcg ctggtcgatg
     3181 gccgggtgat ttttcagcat ctcacgtacg gcttcgacaa taacgcccac ttttgccgca
     3241 tcctcataac gtaaaccaat ggtcgtggta atgcggcggt tggtcattcg tcctgggttt
     3301 tctacgctga tcgacgaaaa cagcgagttc ggtacgtaca atggacgatt atcaaaggtc
     3361 gtaattttgg taattcgcca gccaatttcc gctactgtac cttcgatatt tctgtccggt
     3421 gaacggatcc agtcgccaat actgaaagga cggtcgaaat agagcatgat cccggaaaag
     3481 aaattactca gaatatcttt tccggccata ccgacagcca gaccaccaat accaccaaag
     3541 gtcagcaagc cagaaaggct catgccgaaa tgttcgccat aaagcagaac aagcaccaca
     3601 ataatggtga ttttgataat gcgcgacata atccgcgcac tggtgatatc gcgacctttt
     3661 ttaatctgct gtttttcaaa ctgattaatc agcaaaaata gcttaatcgt cagaataacc
     3721 gcaatcaggg acgtacagat aaaatcgata acgcctgggg tgataaattt gagtttatag
     3781 ttttctataa cataattaat aatgctacca acagcactga taattatggt gtagattaaa
     3841 aattgcaccg catggaataa aaaacctttt cttttacgat ttccgcggcg aaaccaaaag
     3901 ctcatcagaa tcaatgctgc gcagctaccg aaaataatga ccagattaag cgcattattt
     3961 gtaaacagtt cagcgatcat tgttttatca ggctcctcca gataattgtc gtcatgccgg
     4021 aaccccctgg cggggctatt ttaccgcgac aattcattca gatcatcaat agtcagggaa
     4081 ggaagtagca acattag
//
LOCUS       DADMHM010000261         3988 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.266, whole genome shotgun sequence.
ACCESSION   DADMHM010000261 DADMHM010000000
VERSION     DADMHM010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3988)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3988)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3988
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.266"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..1865)
                     /locus_tag="JN125_003892"
     CDS             complement(<1..1865)
                     /locus_tag="JN125_003892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY8873482.1"
                     /translation="MTVKISGVLKDGTGKPVQNCTIVLKARRTSSTVVVNTVASENPD
                     EAGRYSMDVEHGQYSVTLLVEGFPPSHAGTITVYEGSRPGTLNDFLGAMTEDDVRPEA
                     LRRFEQMVEEVSRNASAVAQNTAAAKKSASDASASASEAATHATDAAASARAASTSAG
                     QAASSAQSASSSAGTASTKATEALKSAAAAESSKSAAATSAGAAKTSETNAAASQQSA
                     ATSASTATTKASEAATSARDASASKEAAKSSETNAASSASSAASSATAAANSAKAAKT
                     SETNARSSETAAEQSASAAAGSKTAAASSASAASTSAGQASASVTAAGKSAESSASSA
                     STATTKAGEATEQASAAARSASAAKTSETNAKASETSAESSKTAAASSASSAASSASS
                     ASASKDEATRQASAAKSSATTASTKATEAAGSATAASQSKTTAESAATRAEAAADRAE
                     EIAGAVAMEDASLTTKGVVKLSSAVDSTSESLAATPKAVKAANDNANSRVPSNRKVNG
                     KALTADITLTPKDIGTLNSVTMSFSGGAGWFKLATVTMPQASSIVYIALIGGAGYNVG
                     SPHQAGISELVLRAGNGNPKGITGALWKRTAVGLTNFAWINTSGDTYDIYVEIGN"
     gene            complement(2017..2616)
                     /locus_tag="JN125_003893"
     CDS             complement(2017..2616)
                     /locus_tag="JN125_003893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ail/Lom family protein"
                     /protein_id="HAY8873483.1"
                     /translation="MRKLCAVILSAVVWQVAAATPASAAEHQSTLSAGYLHASTNVPG
                     SDDLNGINVKYRYEFTDALGLITSFSYANAEDEQKTRYSDTRWHEDSVRNRWFSVMAG
                     PSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAW
                     GAGVQFNPTESVAVDLAYEGSGSGDWRTDAFIVGIGYRF"
     gene            complement(2684..>3988)
                     /locus_tag="JN125_003894"
     CDS             complement(2684..>3988)
                     /locus_tag="JN125_003894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_305676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1983 domain-containing protein"
                     /protein_id="HAY8873484.1"
                     /translation="YFQITATPHLAVYDPTVQFEFWFSEKRIADIRQVETAARYLGSA
                     LYWIAASINIKPGHDYYFYIRSVNTVGKSAFVEAVGRASDDVEGYLDFFKGEIGKTHL
                     AQELWTQIDNGQLAPDLAEIRTSITNVSNEITQTVNKKLENQSAAIQQIQKVQVDTNN
                     NLNSMWAVKLQQMQDGRLYIAGIGAGIENTPAGMQSQVLLAADRIAMINPANGNTKPM
                     FVGQGDQIFMNEVFLKYLTAPTITSGGNPPAFSLTPDGRLTAKNADISGNVNANSGTL
                     NNVTINENCRVLGKLSANQIEGDLVKTVGKAFPRDSRAPERWPSGTITVRVYDDQPFD
                     RQIVIPAVAFSGAKHEKEHTDIYSSCRLIVRKNGAEIYNRTALDNTLIYSGVIDMPAG
                     HGHMTLEFSVSAWLVNNWYPTASISDLLVVVMKKATAGITIS"
BASE COUNT          837 a         1129 c          988 g         1034 t
ORIGIN      
        1 taattgccaa tctcaacgta aatatcatat gtatcgccgg atgtgttgat ccaggcgaaa
       61 ttcgttaatc cgacggctgt acgcttccac aaagccccgg taattccttt ggggtttcca
      121 ttgcctgctc gtagaaccag ttctgaaatg cctgcctgat gtggggaacc gacgttgtaa
      181 ccagcgccac caatcaatgc gatgtaaacg atggaactcg cttgtggcat ggtaaccgta
      241 gccagtttga accacccagc cccgccagag aaagacatcg ttactgaatt taaagtacca
      301 atatctttcg gcgttaatgt tatatccgca gtcaatgctt ttccgttaac ttttcggtta
      361 gatggcaccc tgctattcgc attgtcattg gctgctttaa ctgcttttgg cgttgcggcc
      421 agcgattcac tggtgctatc aacagcactg ctaagtttca caacaccttt agttgtaagg
      481 cttgcgtctt ccatcgcaac tgcaccggca atctcttcag cacgatcagc agcagcttcc
      541 gcacgggtcg cagcggattc agcagtagtt ttgctctgag atgctgccgt cgcactgcct
      601 gccgcctctg ttgccttcgt ggatgccgtc gtggcgctgc tcttcgctgc tgacgcttgt
      661 ctggtcgcct catcttttga agcagacgcc gatgatgccg atgacgccgc cgaactggcg
      721 gacgatgcgg cagccgtttt tgaggattct gcgctggttt ccgacgcttt cgcgttcgtt
      781 tcggatgtct tcgctgcgga agcagacctc gctgctgcgc tggcctgttc agtggcttcg
      841 ccagccttcg ttgtggctgt tgaagcagac gatgcggagc tttctgccga ttttccggcg
      901 gcggtgacac tggctgaggc ctgcccggca cttgttgacg ctgcactggc agacgacgca
      961 gccgctgttt ttgagcctgc cgcagctgag gcactctgtt ccgctgccgt ttcagaagac
     1021 ctggcgtttg tctcagacgt ttttgccgcc ttcgcagaat ttgctgccgc cgttgccgag
     1081 gaagctgcgc tgctggcgct cgaggctgcg ttcgtttctg atgattttgc cgcctctttt
     1141 gaagccgacg catcccgtgc tgaagtggct gcttctgacg ctttcgtggt cgcggtggat
     1201 gcagaagtgg ctgctgattg ttgtgacgct gccgcattcg tttctgacgt tttcgccgca
     1261 ccggcactgg tagccgccgc gctttttgag gactctgcag cggcagcact ttttaatgct
     1321 tcagtggcct ttgttgatgc cgttcctgcg ctggaagacg ctgactgagc cgacgacgcg
     1381 gcctgtccgg ctgacgtgct ggcggcacgt gctgaggctg cagcatcggt tgcatgagtt
     1441 gccgcctcgc tggctgatgc actggcatcg ctggctgatt ttttcgcggc tgccgtattc
     1501 tgtgcaaccg cggaggcgtt acgtgacacc tcttccacca tctgctcaaa gcggcgcagt
     1561 gcctccggtc ggacatcatc ctccgtcatg gcaccgagaa aatcattcag cgtacctggt
     1621 ctggaacctt catagacggt aatggtcccg gcatgtgaag gcggaaaacc ttcaaccagc
     1681 agggtgacgc tgtactgacc atgctcaaca tccatgctgt aacgtccggc ttcatccgga
     1741 ttttcagagg ccaccgtgtt caccaccacc gtgctgctgg ttcgtctggc cttcagcaca
     1801 atggtgcagt tctgtactgg ttttcctgtg ccatctttaa gcacgccaga aatttttact
     1861 gtcatacttt tccaccaata aaaaaagccc gcagcagtga cgccacgggc ttcaggacag
     1921 tgtaacttta cgtttcctca aacgcagttc accccataaa gtggatgaac ctgcgtatca
     1981 taacaatatt tacagaagat aaatcggcgt ctgttgtcag aaacggtatc cgataccaac
     2041 aataaatgca tccgttcgcc agtcgccact accggaacct tcataagcaa ggtcaacggc
     2101 cacggattcg gtcgggttaa actgcacgcc agccccccac gccagagagg tattgctgtg
     2161 gcgaccgtca tcacttccgg tcagcacgtc gtgcgttttc cccttgttgt cagttacgcg
     2221 gagataatcc ccggagaaag tcgacacacg gctgtaagcc acacccgcca tcgcatacgc
     2281 gctgaaccat tcattcacgc gtacagacgg ccccgccatc acgctgaacc agcggttacg
     2341 cacggaatct tcatgccagc gggtatcgct gtagcgcgtt ttttgctcat cctcagcatt
     2401 ggcataactg aaggacgtaa tcagccccag cgcgtccgta aactcataac ggtatttcac
     2461 gttaatcccg ttcagatcat cactaccggg aacgttcgtc gaggcatgga gataccccgc
     2521 gctcagcgtg gactgatgtt ctgctgcact cgctggcgta gcagcggcga cctgccagac
     2581 tactgcggac aaaataacag cacataattt acgcataatt acctctcgct tttctgcaat
     2641 aaaaaaggcg ccatttctgg cgcccgtatc tgggttataa aattcagcta atcgtgatgc
     2701 ctgcagtggc tttcttcatc accacaacca gcaaatcgct gatacttgct gtgggatacc
     2761 agttatttac cagccatgct gacaccgaaa actccagtgt catgtgaccg tgaccggcag
     2821 gcatatcaat aacaccactg taaatcagcg tattatccag cgcggtacgg ttataaattt
     2881 cagcaccgtt tttccgcact atcagacggc atgaggagta aatatcagta tgctctttct
     2941 catgtttagc gccgctgaat gccaccgccg gaataacaat ctgccggtca aacggctgat
     3001 cgtcataaac cctgacggta atggttcctg atggccaccg ctctggtgca cgggagtccc
     3061 gggggaaagc tttgcccact gttttaacga gatcgccttc aatctggttc gcggacaatt
     3121 ttcccagaac ccgacagttc tcgttaatag tgacgttgtt gagcgtcccg gagttcgcat
     3181 tcacgttacc gctgatatcg gcatttttcg ccgtcagccg cccgtccggt gtcagggaaa
     3241 atgccggagg attaccgccg ctggtaatgg tgggagccgt cagatatttc aggaacactt
     3301 cattcataaa tatctgatcg ccctgaccaa caaacatcgg ctttgtgttg ccattcgcag
     3361 gattaatcat cgcaatcctg tctgccgcca gcagcacctg actctgcatt cctgctggcg
     3421 tattctcaat accggcaccg atacccgcaa tataaaggcg tccgtcctgc atctgctgca
     3481 gtttcacggc ccacatgctg ttcaggttat tatttgtatc aacctgaact ttctgtatct
     3541 gctggattgc cgcactctga ttttccagtt ttttattgac ggtctgcgtg atttcattgc
     3601 tgacattcgt aatggacgtc ctgatttcag ccaggtccgg tgcaagctga ccgttatcaa
     3661 tctgcgtcca cagctcctgg gccagatgtg ttttcccgat ttctcctttg aaaaaatcca
     3721 ggtaaccttc cacatcatcg ctcgcccgac cgacagcctc cacgaatgcc gatttgccaa
     3781 cagtattcac actgcggata taaaaataat aatcatggcc cggtttgata ttgatactgg
     3841 cagctatcca gtacagcgcc gagccaagat agcgggctgc ggtttcaacc tgcctgatat
     3901 ccgcaatccg cttttccgag aaccagaact caaactgtac cgtcgggtca taaacggcaa
     3961 gatgtggcgt tgcggttatc tgaaaata
//
LOCUS       DADMHM010000262         3979 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.267, whole genome shotgun sequence.
ACCESSION   DADMHM010000262 DADMHM010000000
VERSION     DADMHM010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3979)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3979)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3979
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.267"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..513)
                     /locus_tag="JN125_003895"
     CDS             complement(<1..513)
                     /locus_tag="JN125_003895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706235.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA ligase RtcB family protein"
                     /protein_id="HAY8873485.1"
                     /translation="MGNYIRPLSDAVFTIASDDQWIESLAIQQLHTTANLPNMQRVVG
                     MPDLHPGRGYPIGAAFFSVGHFYPALVGNDIGCGMALWQTDILARKYNADKFEKRLSD
                     LDDVAEESWLEENLPSAFAQHPWCSSLGSIGGGNHFAELQQVDQIINAELFALAGLDA
                     QHLQLLVHSGS"
     gene            complement(759..1211)
                     /locus_tag="JN125_003896"
     CDS             complement(759..1211)
                     /locus_tag="JN125_003896"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAY8873486.1"
                     /translation="MNNIQIRDYQPGDFQQLCAIFIRAVTMTASQHYSPQQIAAWAQI
                     DESRWKEKLAKSQVQVAVINAKLVGFITCVEHYIDMLFVDPEYTRRGVASALLKPLIK
                     SESELTVDASITAKPFFERYGFQTVKQQRVECRGEWFINFYMRYKQQH"
     gene            complement(1208..2272)
                     /gene="dinB"
                     /locus_tag="JN125_003897"
     CDS             complement(1208..2272)
                     /gene="dinB"
                     /locus_tag="JN125_003897"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HAY8873487.1"
                     /translation="MYKKVKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVI
                     STANYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEP
                     LSLDEAYLDVTDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNK
                     PNGQFVITPAEVPAFLQTLPLAKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVMLLKRF
                     GKFGRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERR
                     LAKVKPDLLIARQGVKLKFDDFQQTTQEHVWPRLNKADLIATARKTWDERRGGRGVRL
                     VGLHVTLLDPQMERQLVLGL"
     gene            complement(2319..3089)
                     /locus_tag="JN125_003898"
     CDS             complement(2319..3089)
                     /locus_tag="JN125_003898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001460821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873488.1"
                     /translation="MICTNQLRYTGKDGVYFHLQGQPDNFLSLSATENMEFDSPMMVT
                     TQNMQSGQTVTDNVQRAPRTITISGVVVVGESGSILISRDNKLVENFIDTLESWRDQK
                     QIISVICKDGIKIDDSIITSFKASKDVGISNGLRIQLTFQEINFKAIVGQTDISAATG
                     KTATTNDGGATSKKNTGNTTTSLGNGMLMCQELYNRSTSELTNEQLQARINCGKNVRV
                     ENGKSTFSDAANEQASKVLKSGNALRKYSVNPNKKGTY"
     gene            complement(3253..>3979)
                     /locus_tag="JN125_003899"
     CDS             complement(3253..>3979)
                     /locus_tag="JN125_003899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001128198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873489.1"
                     /translation="VRGFFDEVTLAYRGLTDEQKKVVDALGSGLINSLKVLAGVIAVK
                     KVVGVTRSIYGLMTAITRLGQVADTTADNVNRKNGKPSRLNPMNMLLAGSAIYAGYER
                     LASTPERMEAQAKLPELAKESGLKPVFTMDDVKGWFSSAANKIANFQEPMNNFVNNTQ
                     STPPAITGDIVNSNAQLAMTISELSRKVDALTVEAKKPLSVNITGEATVRPDEPAFFT
                     FNQSANDQFTQDMLLSSSYPEEE"
BASE COUNT         1062 a          928 c          846 g         1143 t
ORIGIN      
        1 cgagccgcta tgaaccaaca gttgcagatg ttgtgcatcc agacctgcta gtgcaaacag
       61 ttcagcgttg atgatttgat caacttgttg cagttcagcg aaatgattgc cgccaccgat
      121 agagccaagc gagctgcacc aaggatgctg tgcaaatgct gacggcaggt tttcctccag
      181 ccagctttct tcagcaacgt catccagatc tgataatcgc ttttcaaact tatcggcgtt
      241 gtatttgcga gcgagaatat ctgtttgcca tagcgccata ccgcagccga tatcattgcc
      301 gaccagtgcc ggataaaaat gaccaacaga gaagaacgct gcgccaatcg gatagccgcg
      361 tccgggatgt aaatctggca tccccactac gcgctgcatg ttgggtaaat ttgccgtggt
      421 gtgtaattgt tggatcgcta aactctcgat ccactggtca tcagatgcga tggtaaatac
      481 cgcatcggat aagggacgaa tataattgcc catataccat tccgtaaata gactcgtcat
      541 acttcaagtt gcatgtgttg cgacttgaat tattgagagt aacaattaaa aaatcaggaa
      601 atagcagacg aatccagggc aagaaaaaaa gaattaatcc tggaaaggtc tgcaaagagt
      661 cattgataaa ggatttgtca tgatttacct ccttgcagtt tgtggaataa gaaaacgcgc
      721 acatactagg cttgcgttat tttcattgca agctggattt aatgttgctg tttataacgc
      781 atataaaaat taataaacca ctctccccga cattcaacgc gttgctgctt aactgtctga
      841 aaaccataac gttcaaaaaa gggttttgcg gttatgcttg cgtccaccgt aagttcggat
      901 tcagacttaa tcaaaggttt taacaaagcg ctggcaaccc cacggcgggt gtattcaggg
      961 tcaacaaata acatatcgat atagtgttca acgcaggtaa taaagccgac cagttttgca
     1021 ttaatgactg caacctgcac ttgtgatttc gcgagtttct ccttccagcg agattcgtca
     1081 atctgcgccc aggcggcaat ttgttgtggt gaataatgct gactggcagt catcgtaacc
     1141 gctctaatga aaatagcgca tagttgctga aaatcgccag gctgatagtc tcttatttgt
     1201 atgttattca taatcccagc accagttgtc tttccatttg cgggtcaagc aacgtcacat
     1261 gcagccccac cagtcgcaca ccgcgcccgc cgcggcgttc atcccaggtt ttacgcgcgg
     1321 tggcgattaa gtcagcttta ttcagccgcg gccagacgtg ctcctgagtg gtttgctgaa
     1381 aatcatcaaa ctttaatttc accccctggc gagcaatcag taaatcaggt ttcacctttg
     1441 ccagacggcg ttcaagttcc ggatacagcc gctcgataat cgcttcacat tcagaccagt
     1501 ggtggatatc ttccgccatc gtgcgttcca cgccgacgga ttttcgcaac cgttcgctgt
     1561 taacgtcgcg ctcgtcaatc ccctgactac gctcccacaa aatgcggcca aatttgccaa
     1621 agcgtttaag cagcatcacc agatcacact tttgtacatc accgcaggtt cgtagcccca
     1681 tcgcttccag ttttgccgcc gagactttgc cgacgccggg gatttttgcc agtggtaagg
     1741 tttgtaaaaa tgccggaact tctgccggcg taatcacaaa ctggccgttg ggtttattca
     1801 tgtcggaggc gattttggcg agaaacttta cgggtgccac gcccgcagac gccgtcagtt
     1861 gcagctcgtt gaaaatcgtc tggcggattt cctgggcgat gagggtcgca gaaccgtggc
     1921 aatggacgct atcggtgacg tcgagataag cctcatccag tgacaacggt tcaatacgcg
     1981 aggtgtagcg cgagaagatt tcgcggatat gatttgaggc ttctttgtag gcgtcaaagc
     2041 gccccggaag caaggtgaga tgcgggcata atttgagcgc catccctgtc ggcatagcgc
     2101 tacgtacgcc aaatttacgc gcgggataat tggcggtact gatcaccccc cgacgttcgc
     2161 ggctgccgcc aatagcaata gggatatcgc gcagggcggg attgtcgcgc atctccaccg
     2221 ccgcgaaaaa gcagtccata tccacatgaa taatcttcac tttcttatac accctgtgta
     2281 tttatacatg caaagagatt atacacacaa aagcaaaatc agtaagtgcc cttcttattc
     2341 ggattcacag agtacttccg taaagcatta cccgacttaa gcacctttga agcttgctca
     2401 ttagcggcat ctgagaaggt gctttttcca ttctcaactc tgacattttt accacaattg
     2461 atacgggctt gaagttgctc attagtgagt tcactcgtag agcgattata tagctcctga
     2521 cacatcaaca taccgttacc taagcttgtc gtagtgttac cagtattctt tttactggta
     2581 gcaccaccat catttgtagt agctgtcttt ccagttgctg ctgaaatatc tgtttgacca
     2641 acaatagctt tgaagttaat ttcctgaaaa gttagctgga ttcttaggcc attagaaatt
     2701 ccaacatctt tagaggcttt aaagcttgta ataatggagt catcaatttt aattccatct
     2761 ttacagatga ctgaaataat ctgcttctgg tcacgccagc tttcaagagt gtcgatgaag
     2821 ttctccacca gcttattatc tcttgagata aggatactac cggattcacc aaccacaacc
     2881 acaccactaa tagtgattgt tctgggtgct ctttgaacat tatctgttac agtctgccct
     2941 gattgcatat tttgagtggt aaccatcata gggctgtcaa attccatgtt ttcagttgct
     3001 gatagtgaca agaaattatc tggttggcct tgtagatgaa agtaaacgcc atctttgcca
     3061 gtgtaacgaa gctgattagt gcaaatcatt aaattctcct ttgatttcaa agacttagtg
     3121 tattttaatc atttttaacc aagcctttga tatataagta ttttctctgt taagcgtgag
     3181 ctacgtaaat tctatttttc agtgggtata tctgttcaga agatttcacg tagcacacgg
     3241 atatataaga aatcattctt cctctggata gcttgaactt aagagcatat cctgcgtgaa
     3301 ctggtcatta gctgattgat tgaaagtaaa gaaagctggt tcatccggtc taacagttgc
     3361 ttcaccagtg atattaactg acaagggctt cttggcttct actgttaaag catcaacctt
     3421 gcgtgatagc tcactaatag tcattgcaag ttgagcatta ctattaacta tgtcacctgt
     3481 gatagctggt ggagttgatt gtgtgttatt tacgaagtta ttcatcggtt cttggaagtt
     3541 agcaatttta ttagctgcac tactaaacca acctttcaca tcgtccatag tgaacactgg
     3601 tttaagtcca gactctttag ctagctctgg taatttagct tgtgcttcca ttcgttcagg
     3661 tgtagaagct aatctttcat aacctgcata gatagcacta ccagctaata gcatattcat
     3721 agggtttagt cttgatggtt tcccattctt tctattcacg ttatccgctg tagtatcagc
     3781 gacctgacct aatcttgtga tagctgtcat aagcccgtaa atacttctgg ttacaccaac
     3841 aactttcttt acagcaataa caccagccaa gacttttaag ctattaatca agccagaacc
     3901 taaagcatca actactttct tttgttcatc ggttaaacca cgataagcca atgtcacctc
     3961 atcaaagaaa cctctcacc
//
LOCUS       DADMHM010000263         3918 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.268, whole genome shotgun sequence.
ACCESSION   DADMHM010000263 DADMHM010000000
VERSION     DADMHM010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3918)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3918)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3918
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.268"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..1034
                     /gene="yqhD"
                     /locus_tag="JN125_003900"
     CDS             <1..1034
                     /gene="yqhD"
                     /locus_tag="JN125_003900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="alcohol dehydrogenase"
                     /protein_id="HAY8873490.1"
                     /translation="GVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTF
                     LLAVGGGSVLDGTKFIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSES
                     NAGAVISRKTTGDKQAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYV
                     TKPVDAKIQDRFAEGILLTLIEDGPKALKEPENYDVRANVMWAATQALNGLIGAGVPQ
                     DWATHMLGHELTAMHGLDHAQTLAIVLPALWNEKRDTKRAKLLQYAERVWNITEGSDD
                     ERIDAAIAATRNFFEQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDV
                     SRRIYEAAR"
     gene            1139..1966
                     /gene="dkgA"
                     /locus_tag="JN125_003901"
     CDS             1139..1966
                     /gene="dkgA"
                     /locus_tag="JN125_003901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417485.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,5-didehydrogluconate reductase DkgA"
                     /protein_id="HAY8873491.1"
                     /translation="MANPTVIKLQDGNVMPQQGLGVWQASNEEVITAIQKALEVGYRS
                     IDTAAAYKNEEGVGKALKNASVNREELFITTKLWNDDHKRPREALLDSLKKLQLDYID
                     LYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQIHHLQRLIDETGVTPVINQ
                     IELHPLMQQRQLHAWNATHKIQTESWSPLAQGGKGVFDQKVIRDLADKYGKTPAQIVI
                     RWHLDSGLVVIPKSVTPSRIAENFDVWDFRLDKDELGEIAKLDQGKRLGPDPDQFGG"
     gene            2166..3092
                     /locus_tag="JN125_003902"
     CDS             2166..3092
                     /locus_tag="JN125_003902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708829.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbjP/YqhG family protein"
                     /protein_id="HAY8873492.1"
                     /translation="MKIILLFLAALASFTVHAQPPSQTVEQTVRQIYQNYKSDASTPY
                     FGETGERAITSARIQQALTLNDNLTLPGNIGWLDYDPVCDCQDFGDLVLESVAITQTD
                     ADHADAVVRFRIFKDDKEKTTQTLKMVAENGRWVIDDIVSNHGSVLQAVNSENEKTLA
                     ALASLQKEQPEAFVAELFEHIADYSWPWTWVVSDSYRQAVNAFYKTTFKTANNPDEDM
                     QIERQFIYDNPICFGEESLFSRVDEIRVLEKTADSARIHVRFTLTNGNNEEQELVLQR
                     REGKWEIADFIRPNSGSLLKQIEAKTAARLKQ"
     gene            3143..3400
                     /gene="yqhH"
                     /locus_tag="JN125_003903"
     CDS             3143..3400
                     /gene="yqhH"
                     /locus_tag="JN125_003903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein YqhH"
                     /protein_id="HAY8873493.1"
                     /translation="MKTIFTVGAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLE
                     QDMKALRPQIYAAKSEANRANTRLDAQDYFDCLRCLRMYAE"
     gene            3480..3770
                     /locus_tag="JN125_003904"
     CDS             3480..3770
                     /locus_tag="JN125_003904"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873494.1"
                     /translation="MRRWHTCFFILLFCGFSGNVLCKESINEAIERLYQPLTSNDDIP
                     ITDEFSLDLRSNMSATPGKMTPWLNNNLLCRCVAVSLCRCVAVSMTLSFLQK"
BASE COUNT         1074 a          974 c          974 g          896 t
ORIGIN      
        1 ccggcgttct cgatcaagtt ctggatgccc tgaaaggcat ggacgtgctg gaatttggcg
       61 gtattgagcc aaacccggct tatgaaacgc tgatgaacgc cgtgaaactg gttcgcgaac
      121 agaaagtgac tttcctgctg gcggttggcg gcggttctgt actggacggc accaaattta
      181 tcgccgcagc ggctaactat ccggaaaata tcgatccgtg gcacattctg caaacgggcg
      241 gtaaagagat taaaagcgcc atcccgatgg gctgtgtgct gacgctgcca gcaaccggtt
      301 cagaatccaa cgcaggcgcg gtgatctccc gtaaaaccac tggcgacaag caggcgttcc
      361 attctgccca tgttcagccg gtatttgccg tgctcgatcc ggtttatacc tacaccctgc
      421 cgccgcgtca ggtggctaac ggcgtagtgg acgcctttgt acacaccgtg gaacagtatg
      481 ttaccaaacc ggttgatgcc aaaattcagg accgtttcgc agaaggcatt ttgctgacgc
      541 tgatcgaaga tggtccgaaa gccctgaaag agccagaaaa ctacgatgtg cgcgccaacg
      601 tcatgtgggc ggcgacgcag gcgctgaacg gtttgattgg cgctggcgta ccgcaggact
      661 gggcaacgca tatgctgggc cacgaactga ctgcgatgca cggtctggat cacgcgcaaa
      721 cactggctat cgtcctgcct gcactgtgga atgaaaaacg cgataccaag cgcgctaagc
      781 tgctgcaata tgctgaacgc gtctggaaca tcactgaagg ttccgacgat gagcgtattg
      841 acgccgcgat tgccgcaacc cgcaatttct ttgagcaatt aggcgtgccg acccacctct
      901 ccgactacgg tctggatggc agctccatcc cggctttgct gaaaaaactg gaagagcacg
      961 gcatgaccca actgggcgaa aatcatgaca ttacgttgga tgtcagccgc cgtatatacg
     1021 aagccgcccg ctaagctttt tacgcctcaa actttcgttt tcgggcattt cgtccagact
     1081 taagttcaca acacctcacc ggagcctgct ccggtgagtt catataaagg aggaacgtat
     1141 ggctaatcca accgttatta agctacagga tggcaatgtc atgccccagc agggactggg
     1201 cgtctggcaa gcaagtaatg aggaagtaat caccgccatt caaaaagcgt tagaagtggg
     1261 ttatcgctcg attgataccg ccgcggccta caagaacgaa gaaggtgtcg gcaaagccct
     1321 gaaaaatgcc tcagtcaaca gagaagaact gttcatcacc actaagctgt ggaacgacga
     1381 ccacaagcgc ccccgcgaag ccctgctcga cagcctgaaa aaactccagc ttgattatat
     1441 cgacctctac ttaatgcact ggcccgttcc cgctatcgac cattatgtcg aagcatggaa
     1501 aggcatgatc gaattgcaaa aagagggatt aatcaaaagc atcggcgtgt gcaacttcca
     1561 gatccatcac ctgcaacgcc tgattgatga aactggcgtg acgcctgtga taaaccagat
     1621 cgaacttcat ccgctgatgc aacaacgcca gctacacgcc tggaacgcga cacacaaaat
     1681 ccagaccgaa tcctggagcc cattagcgca aggagggaaa ggcgttttcg atcagaaagt
     1741 cattcgcgat ctggcagata aatacggcaa aaccccggcg cagattgtta tccgctggca
     1801 tctggatagc ggcctggtgg tgatcccgaa atcggtcaca ccttcacgta ttgccgaaaa
     1861 ctttgatgtc tgggatttcc gtctcgacaa agacgaactc ggcgaaattg caaaactcga
     1921 tcagggcaag cgtctcggtc ccgatcctga ccagttcggc ggctaacatg caaattctcc
     1981 cggtggcggt aatgttccgc taccggactt ttcagaaatc atttattccc ctcgcgtccc
     2041 gcccgttgtt actcttcctt gttcaggaat gccaaatata aggacatcat catgcagagc
     2101 cggaagctct taaaagaaca actcatctat atccgggata aacgcaacgg agaggtgaaa
     2161 aacagatgaa aataatactt ctgtttttag cagccttggc aagttttacc gtacacgcgc
     2221 agcctccttc acagaccgta gaacaaacag tccggcagat ttatcagaac tataaatcag
     2281 atgccagtac gccttatttc ggtgaaaccg gagagcgggc gataacttca gcgcgtattc
     2341 aacaggcgct taccctgaac gacaatctta cgctgccggg caatattggc tggctggatt
     2401 atgatccggt ttgtgattgt caggattttg gcgatctggt gctagaaagc gttgcgataa
     2461 cccaaactga cgccgatcat gccgatgccg ttgtgcgctt tcgtatcttt aaagatgata
     2521 aagaaaagac cacgcagaca ctgaaaatgg tggcggaaaa tggtcgttgg gtcattgacg
     2581 atattgtcag caatcatggc agcgtcttac aagcagttaa tagcgagaat gaaaaaacgc
     2641 tggccgcttt agcttcgttg caaaaagaac agccggaagc ctttgttgcc gaactctttg
     2701 aacatattgc tgattatagc tggccgtgga cgtgggtggt ttccgactct taccgccagg
     2761 cggttaatgc cttctataaa accaccttca agacggccaa taatcccgat gaagatatgc
     2821 aaatagaacg gcaatttatt tacgacaatc cgatctgttt tggcgaagag tcgctatttt
     2881 cacgcgttga tgaaattcga gtcctggaga aaaccgccga ttccgcccgc attcatgttc
     2941 gttttacgct gaccaatggc aacaacgaag agcaagaact ggttttacag cggcgcgaag
     3001 gcaagtggga aatcgctgat tttatccgcc cgaacagcgg cagcctactt aagcagattg
     3061 aggcaaaaac tgccgccaga ttaaagcaat gagctgaatt aaataacaat tagccggaac
     3121 aataaataaa agggaacact atatgaaaac gattttcacc gtgggagctg ttgttctggc
     3181 aacctgcttg ctcagtggct gcgtcaatga gcaaaaggtc aatcagctgg cgagcaatgt
     3241 gcaaacatta aatgccaaaa tcgcccggct tgagcaggat atgaaagcac tacgcccaca
     3301 aatctatgct gccaaatccg aagctaacag agccaatacg cgtcttgatg cacaggacta
     3361 ttttgattgc ctgcgctgct tgcgtatgta cgcagaatga taaaaaaatc cccggcagta
     3421 tgtcagttgc cgggttatag gctgtttgct aaaaaaaaga caaacataag gacatgatta
     3481 tgcgacgctg gcacacctgt ttttttattc tgctgttctg tggcttcagc ggaaacgtgt
     3541 tgtgcaaaga atcgattaat gaagcgatag aacgtttgta ccaaccattg accagtaatg
     3601 acgatatacc aataaccgat gaattcagtc tcgatttgcg aagtaatatg agcgctactc
     3661 ctggcaaaat gacaccctgg ctgaataata atcttttgtg tcgctgtgtc gctgtgtcgc
     3721 tgtgtcgctg tgtcgctgtg tcgatgacgc tttcgtttct gcagaaataa tccaaagcac
     3781 acacctaaat ggcggccgaa cgcatgtact gttgcagctg gttatcaaac aaaatcgcac
     3841 agatatccac cggttactgg ggctaatgct ggttcgtgaa aatgataatc atcgttggct
     3901 aatagaagac atcgatga
//
LOCUS       DADMHM010000264         3883 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.269, whole genome shotgun sequence.
ACCESSION   DADMHM010000264 DADMHM010000000
VERSION     DADMHM010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3883)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3883)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3883
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.269"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(851..1792)
                     /gene="fabY"
                     /locus_tag="JN125_003905"
                     /gene_synonym="yiiD"
     CDS             complement(851..1792)
                     /gene="fabY"
                     /locus_tag="JN125_003905"
                     /gene_synonym="yiiD"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001666856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid biosynthesis protein FabY"
                     /protein_id="HAY8873495.1"
                     /translation="MYHLRVPQTEEELERYYQFRWEMLRKPLHQPKGSERDAWDAMAH
                     HQMVVDEQGNLVAVGRLYINADNEASIRFMAVHPDVQDKGLGTLMAMTLESVARQEGV
                     KRVTCSAREDAVEFFAKLGFVNQGEITTPTTTPIRHFLMIKPVATLDDILHRGDWCAQ
                     LQQAWYEHIPLSEKMGVRIQQYTGQKFITTMPETGNQNLHHTLFAGSLFSLATLTGWG
                     LIWLMLRERHLGGTIILADAHIRYSKPISGKPHAVADLGALSGDLDRLARGRKARVQM
                     QVEIFGDETPGAVFEGTYIVLPAKPFGPYEEGGNEEE"
     gene            complement(1837..2274)
                     /gene="dtd"
                     /locus_tag="JN125_003906"
     CDS             complement(1837..2274)
                     /gene="dtd"
                     /locus_tag="JN125_003906"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000560980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HAY8873496.1"
                     /translation="MIALIQRVTRASVTVEGEVTGEIGAGLLVLLGVEKDDDEQKANR
                     LCERVLGYRIFSDAEGKMNLNVQQAGGSVLVVSQFTLAADTERGMRPSFSKGASPDRA
                     EALYDYFVERCRQQEMNTQTGRFAADMQVSLVNDGPVTFWLQV"
     gene            complement(2271..3143)
                     /locus_tag="JN125_003907"
     CDS             complement(2271..3143)
                     /locus_tag="JN125_003907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence factor BrkB family protein"
                     /protein_id="HAY8873497.1"
                     /translation="MLKTIQDKARHRTRPLWAWLKLLWQRIDEDNMTTLAGNLAYVSL
                     LSLVPLVAVVFALFAAFPMFSDVSIQLRHFIFANFLPATGDVIQRYIEQFVANSNKMT
                     AVGACGLIVTALLLMYSIDSALNTIWRSKRARPKIYSFAVYWMILTLGPLLAGASLAI
                     SSYLLSLRWASDLNTVIDNVLRIFPLLLSWISFWLLYSIVPTIRVPNRDAIVGAFVAA
                     LLFEAGKKGFALYITMFPSYQLIYGVLAVIPILFVWVYWTWCIVLLGAEITVTLGEYR
                     KLKQAAEQEEDDEP"
     gene            complement(3137..3736)
                     /gene="yihX"
                     /locus_tag="JN125_003908"
     CDS             complement(3137..3736)
                     /gene="yihX"
                     /locus_tag="JN125_003908"
                     /EC_number="3.1.3.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312835.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-1-phosphatase"
                     /protein_id="HAY8873498.1"
                     /translation="MLYIFDLGNVIVDIDFNRVLGAWSDLTRVPLATLKKSFHMGEAF
                     HQHERGEISDEAFAEALCHEMALPLSYEQFSHGWQAVFVALRPEVIAIMHKLREQGHR
                     VVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGFSPSD
                     TVFFDDNADNIEGANQLGITSILVKDKTTIPDYFAKVLC"
BASE COUNT         1028 a          978 c          915 g          962 t
ORIGIN      
        1 caccttacct atattactca ttaatgtatg tgcgaaaatt acgccggaaa atcattaaaa
       61 aaaagcggat ttttgcatgt tgttttgttt ttgcgaggcg ttttccagaa ataataagag
      121 tgttgcagtt gtttcattta ttactcaaaa atggtttagt tatcgcccag gatgaattat
      181 gggtgctatg aatatattat attcagagat atttatttgc ataatctgaa tggtgtagcc
      241 gaaaaacgtc agcatcctaa cagcaccagg atttaaggtg aaattaatct ttcatcacag
      301 accggtcagt actgccacca accggtcttt acttgctcat cgttataatt ttgttggtaa
      361 cagttcggga acgttgtttt tctaaattaa caacagaata actttcttgt ttaatgagat
      421 taatattggc aaccattata gcctccttcc cacggtttaa gagcaaacat acaacataat
      481 gattcataac atacagagca gtaaatgaat gatactgaca atgatgccag cccattatct
      541 ttgcataatg tttgtgagct atagatttta aaaatattta tgaggaaagt atggcaccag
      601 aggaggtttt gactatcaaa aatcgctcaa acctgaacta agatgatgag ttaagcatta
      661 tctgcgataa ttgccactca gctctacaaa taatatttaa atgctcctga acagtgatgt
      721 agcaagacac gtatggtgcc aacgaagaat aaaaatttat agagttctta ttcaatatta
      781 ccggcataga cagggaatga tgtaaatgac cggaataaat gagagaggca gcaccgcccc
      841 tctccataag ctactcttct tcgttcccgc cctcttcata cgggccaaat ggcttcgcgg
      901 gcagaacgat atacgtgcct tcaaacactg cacccggcgt ctcgtcgcca aagatttcaa
      961 cttgcatctg cacccgtgct tttcgtccgc gcgccagacg gtcgagatcg ccgcttaagg
     1021 caccaaggtc ggctaccgca tgaggtttac cgctaatcgg cttgctgtag cggatatgcg
     1081 catcggccag aataatcgtt ccgccgaggt ggcgttcgcg cagcatcagc cagataagcc
     1141 cccaaccggt gagcgttgcc agcgagaata aactcccggc aaacagcgta tggtgcagat
     1201 tctgattacc ggtttccggc atggtggtga taaatttttg cccggtatat tgctgaatgc
     1261 gcacgcccat tttttcacta agcgggatgt gttcgtacca cgcctgttgc agctgcgcgc
     1321 accagtcgcc gcgatgcaaa atatcatcca gagtggcaac aggtttaatc atcaaaaaat
     1381 ggcgaatcgg cgtggtggtt ggtgtggtga tttctccctg attaacaaac cccagcttgg
     1441 cgaaaaactc caccgcgtct tcacgggcgc tacaggtcac gcgcttaacg ccttcctgac
     1501 gcgccaccga ctccagggtc atcgccatca acgtccccag ccctttgtcc tgcacgtcgg
     1561 gatgaacggc cataaagcga atggacgctt cattgtcggc attaatatac agtcggccta
     1621 ccgccaccag attcccctgc tcgtcgacga ccatctgatg atgcgccatc gcatcccacg
     1681 cgtcgcgttc cgaacctttt ggttgatgca ggggcttacg caacatttcc cagcgaaact
     1741 gatagtaacg ctctaactct tcttctgttt gtggaacccg aaggtgatac atagcgatac
     1801 tctctcttgt ttcccgtgac aaccctggaa gctggctcat acctgcaacc agaatgtcac
     1861 ggggccatca ttgaccagcg atacctgcat atcggcagcg aagcgtcctg tttgcgtgtt
     1921 catctcttgc tggcggcagc gttcgacgaa atagtcatat aacgcctctg cgcgatccgg
     1981 tgatgcgcct ttggagaaac ttgggcgcat cccccgttcg gtatctgcgg cgagggtaaa
     2041 ctgggaaacc accagtacac tgccgcccgc ctgttgcacg ttgagattca tcttgccttc
     2101 ggcatcgcta aagatgcggt agccgagcac acgctcgcac agacggtttg ctttctgttc
     2161 gtcgtcatcc ttttcgacac ccaataacac caaaagtccc gcgccaattt cgcccgtcac
     2221 ttctccctcc acggtgacgc tggcacgggt tacgcgttga attaatgcaa tcatggttcg
     2281 tcgtcttctt cttgttcagc tgcttgtttt agtttgcggt attccccgag agtgacagta
     2341 atttccgcgc caagcaagac gatacaccat gtccagtaga cccaaacaaa gagaatgggg
     2401 atcaccgcca gcacaccgta aatgagctga tatgacggga acatggtgat ataaagcgcg
     2461 aaacctttct ttcctgcttc gaacaggagt gcggcgacaa acgcgccgac aatcgcgtcg
     2521 cggttaggta cgcggatggt aggaacaatg ctgtacagca accagaagga gatccacgac
     2581 aacagcaacg gaaaaatacg cagcacgttg tcgatgacag tattgagatc gctcgcccag
     2641 cgcagggaga gcaaatagga actgatcgcc agactggccc ctgccagcag cggccccagc
     2701 gttaaaatca tccagtacac ggcgaacgag taaatttttg gtcgcgctcg tttactgcgc
     2761 cagatggtat tcaacgcgct atcgatggag tacatcaaca ataacgcggt gacgatcagc
     2821 ccgcacgccc caacggcggt catcttgttg gaattggcaa caaattgttc gatataccgc
     2881 tgaataacat cgccagtagc aggcagaaag ttggcaaaaa taaagtgacg taactgaatg
     2941 ctgacgtcgg aaaacatggg aaaagcggcg aaaagcgcaa aaacaacggc aaccagcggc
     3001 actaatgaga gcaacgacac ataggcaagg ttacctgcca gggttgtcat gttgtcctca
     3061 tcaatacgtt gccagagtag ttttagccag gcccatagtg gacgggtacg gtgcctggct
     3121 ttgtcctgaa tggtttttag cataacacct tcgcgaaata gtccgggatg gtggttttat
     3181 ctttcaccag aatactggta atgcccagct gattggctcc ttctatatta tcggcgttat
     3241 cgtcgaaaaa gaccgtatcg ctgggtgaaa aaccttccgc ctgcaaaaca tgctggtaaa
     3301 ttcgtgcttc aggtttgcgc atccccagat cttgcgacag atagatatgg tcagcagcat
     3361 cacgaatttc cgggtattct tccggccaga aggtggtatg caggcggttg gtattggaaa
     3421 gcaccaccac gcgatgcccc tgctcacgca gtttatgcat gatggcgatc acttccgggc
     3481 gcagcgcaac aaacaccgcc tgccagccgt gagagaactg ctcgtagctt agcggtagag
     3541 ccatctcatg acacagcgcc tctgcgaacg cttcgtcgct aatttcccca cgctcatgct
     3601 gatgaaacgc ctcccccata tgaaaactct tcttaagcgt agccagtgga acacgcgtta
     3661 aatcgctcca ggctcccagc acacggttaa agtcgatatc gacaatcaca ttacctaaat
     3721 caaagatata gagcattttt gcctcctttc gcgccacaag aaattaactg tagcgggaaa
     3781 ggatgggttt ggctatgtgg caataagggt aatcttgtga tgctgattgc gaaaaagcag
     3841 agtaatttca ctggcttttt cgcaatagat gaatggttaa gat
//
LOCUS       DADMHM010000265         3882 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.270, whole genome shotgun sequence.
ACCESSION   DADMHM010000265 DADMHM010000000
VERSION     DADMHM010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3882)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3882)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3882
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.270"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            66..1157
                     /gene="nadB"
                     /locus_tag="JN125_003909"
                     /pseudo
     CDS             66..1157
                     /gene="nadB"
                     /locus_tag="JN125_003909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001094506.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="L-aspartate oxidase"
     gene            complement(1142..1879)
                     /gene="trmN"
                     /locus_tag="JN125_003910"
     CDS             complement(1142..1879)
                     /gene="trmN"
                     /locus_tag="JN125_003910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417070.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(1)(Val)
                     (adenine(37)-N(6))-methyltransferase TrmN"
                     /protein_id="HAY8873499.1"
                     /translation="MSQSTSVLRRNGFTFKQFFVAHDRCAMKVGTDGILLGAWAPVAG
                     VKRCLDIGAGSGLLALMLAQRTSDSVIIDAVELESEAAAQAQENINQSPWAERINVHT
                     ADIQQWLTQQTVRFDLIISNPPYYQQGVECAIPQREQARYTTTLDHPSLLTCAAECIT
                     EEGFFCVVLPEQIGNGFTELALSMGWHLRLRTDVAENEARLPHRVLLAFSPQAGECFS
                     DRLVIRGPDQNYSEAYTALTQAFYLFM"
     gene            2011..3345
                     /gene="srmB"
                     /locus_tag="JN125_003911"
     CDS             2011..3345
                     /gene="srmB"
                     /locus_tag="JN125_003911"
                     /EC_number="3.6.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase SrmB"
                     /protein_id="HAY8873500.1"
                     /translation="MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDV
                     LGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKH
                     THLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEAD
                     RMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRE
                     RKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNC
                     YLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLH
                     RIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIEELRPKTRTPSEKQTG
                     KPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTEE"
     gene            complement(3554..>3882)
                     /locus_tag="JN125_003912"
     CDS             complement(3554..>3882)
                     /locus_tag="JN125_003912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311470.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY8873501.1"
                     /translation="LSGDSGGQSNVFRQIFESTLRQRRITVENTIELLSIESIKRCVA
                     ANIGVSYLPRFAVEKELESGELIELPFGEQSQTITAMCAHHAGKAVSPAMHTFIQCIE
                     ECFLPG"
BASE COUNT          968 a         1060 c         1010 g          844 t
ORIGIN      
        1 attattagct ccttctgatg ccattctatt tcaggaagga gtgtccgtta aactcaggct
       61 acctcagggt tgtaggcgcg tgggtatgga accgaaataa agaaacggtg gaaacctgcc
      121 acgcaaaagc agtggtactg gcaaccggcg gtgcgtcgaa ggtgtatcag tacaccacca
      181 atccggatat ttcttctggc gatggcattg ctatggcgtg gcgcgcgggc tgtcgggttg
      241 ccaatctcga atttaatcag ttccacccta ccgcactgta tcacccacag gcacgcaatt
      301 tcctgttaac ggaagcactg cgcggcgaag gcgcttatct caagcgcccg gatggcacgc
      361 gttttatgcc cgattttgat gagcgcggcg aactggcccc gcgcgatatt gtcgcccgcg
      421 ccattgacca tgaaatgaaa cgcctcggcg cagattgtat gttcctcgac atcagccata
      481 agcccgccga ttttattcgc cagcatttcc cgatgattta tgaaaaattg ctcgggctgg
      541 ggattgatct cacacaagaa ccggtaccga ttgtgcctgc tgcacactat acctgcggtg
      601 gtgtaatggt tgatgatcat gggcgtacgg acgtcgaggg cttgtatgcc attggcgagg
      661 tgagttatac cggcttacac ggcgctaacc gcatggcctc gaattcattg ctggagtgtc
      721 tggtctatgg ctggtcggcg gcagaagata tcaccagacg tatgcctgat gcccacggcg
      781 tcagtacgtt accaccgtgg gatgaaagcc gcgttgagaa ccctgacgaa cgggtagtaa
      841 ttcagcataa ctggcacgag ctacggctgt ttatgtggga ttacgtcggc attgtgcgca
      901 caacaaaacg tcttgagcgc gccctgcggc gtatcaatat gttgcaacag gaaatagacg
      961 aatattacgc ccacttccgc gtgtcgaata atttgctgga gctgcgtaat ctggtgcagg
     1021 ttgcggaatt gattgttcgc tgtgccatga tgcgcaagga gagtcgtggc ctgcatttca
     1081 cactggatta tccggaactg ctcacccatt ccggtccgtc gatcctttcc cccggcaatc
     1141 attacataaa cagataaaaa gcctgggtca gcgccgtata cgcttcggaa tagttctggt
     1201 ctggcccacg aatgactaag cgatcgctaa agcattctcc cgcctgcggg gagaatgcca
     1261 gcagcacccg atgcggcagt cgcgcttcgt tttccgccac atccgtccgc aaacgtaaat
     1321 gccagcccat gcttaatgcc agctccgtaa aaccattacc aatctgctct ggcagcacta
     1381 cgcagaaaaa tccctcttcg gtaatgcact ccgccgcaca ggtcagcagc gatgggtgat
     1441 caagcgtagt ggtatagcga gcctgttccc gttgagggat cgcgcactct actccctgct
     1501 gatagtaagg tgggttactg atgattaaat cgaagcgtac tgtctgctgt gtgagccact
     1561 gctgaatatc cgccgtatgg acgttaatcc gctctgccca cggggactgg ttgatatttt
     1621 cctgcgcctg cgcggcagct tcactttcca gctcaacggc atcaattatc acgctgtcac
     1681 tggttcgctg cgccagcatc agtgccagca acccgctacc cgcgccgata tcaaggcaac
     1741 gtttcacccc agccaccggt gcccatgcgc ccagcaaaat gccatccgtt cccactttca
     1801 tcgcacagcg atcgtgagca acaaaaaact gtttaaaagt aaatccatta cgacgaagca
     1861 cggatgtaga ctgtgacatg aaaataaaac cttgcaggaa aaacggcgat agcaccgggt
     1921 gagaacaata cccgagaagc gatatccata caaacagatg aagattgcag ccgtaacgtc
     1981 tataatcagc gccccacaca gaggtagaac atgactgtaa cgactttttc cgaacttgaa
     2041 ctcgacgaaa gcctgctgga agccctccag gataaaggtt tcactcgccc gaccgccatt
     2101 caggctgccg ccattccgcc tgcgctcgat ggccgtgatg tactcggttc tgcgccgaca
     2161 ggcaccggta aaacggcggc gtatctgctg ccagcgttgc agcacctgct cgatttcccg
     2221 cgtaagaaat ccggtccgcc gcgtattttg atcctcaccc caactcgcga gctggcgatg
     2281 caggtggccg atcatgcccg cgaactggcg aaacatacgc atctggatat cgccaccatt
     2341 accggcggcg tagcctatat gaaccacgcg gaagtgttca gcgaaaatca ggacatcgtg
     2401 gtcgccacga ccggacgtct gctgcaatac ataaaagaag agaacttcga ttgccgcgcg
     2461 gttgaaacgc tgatcctcga cgaagcagac cgtatgctgg atatgggctt cgctcaggat
     2521 atcgaacata ttgctggcga aacgcgctgg cgtaaacaga ccctgctctt ttcggcaacg
     2581 ctggaaggcg atgcgattca ggactttgcc gagcgtctgc tggaagatcc ggtggaggtt
     2641 tctgccaatc cgtccacccg tgagcgcaaa aaaattcatc agtggtatta ccgcgccgat
     2701 gacctggaac ataaaaccgc attgctggtg catctgttaa aacagccgga agcgacccgc
     2761 tcaattgtgt ttgtgcgtaa gcgtgaacgt gtgcatgagc tggcaaactg gctgcgcgaa
     2821 gcgggcatca acaactgcta tctcgaaggt gagatggtac agggcaagcg taatgaagcg
     2881 attaaacgcc tgaccgaagg ccgcgtaaac gtactggtag caaccgatgt tgccgcgcgc
     2941 ggtatcgaca ttccagacgt cagccacgtc tttaacttcg atatgccgcg cagtggtgat
     3001 acttatttgc accgtatcgg acgtaccgcg cgcgccggtc gtaaaggcac cgcgatttcg
     3061 ctggtggaag cccatgacca tctgctgctt ggcaaagttg gccgttatat tgaagagccg
     3121 ataaaagctc gcgtcattga ggaactacgc ccgaaaacgc gtacgccaag cgagaagcag
     3181 accggcaagc catcgaagaa agtactggca aaacgcgccg agaagaaaaa agctaaagag
     3241 aaagagaagc cgcgggtgaa aaaacgccat cgcgacacca aaaatattgg taagcgccgt
     3301 aaaccgagcg gaacgggcgt gccaccgcaa acgacagaag agtaatctta attccgggtt
     3361 taagcccgga attaaaagtg ctggcaaacg caaaactgcc tgatgcgcta cgcttatcag
     3421 gcctacatgg ctcatgcaat atattgaatt tgcacgatct tgtaggccgg ataaggcgtt
     3481 cacgccgcat ccggcatgaa caaaacgcac ttcgtcgaca agttgggtgc cgggtttaag
     3541 cccggcatta tttttatccc ggcaaaaaac actcttcaat acactgaata aaagtgtgca
     3601 tcgccgggct aaccgctttt ccagcatggt gtgcgcacat ggccgtaatg gtctgcgact
     3661 gttcgccaaa aggcaattca attaattctc cgctctcaag ctctttttcc accgcaaagc
     3721 ggggcaagta actgacaccg atattcgccg cgacacaacg tttgatactt tcaatgctta
     3781 acagctcaat ggtgttttcc accgtgatcc gccgctgacg cagcgtgctc tcaaatatct
     3841 gccggaagac attagactgg ccccctgaat ctccagacaa cc
//
LOCUS       DADMHM010000266         3831 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.271, whole genome shotgun sequence.
ACCESSION   DADMHM010000266 DADMHM010000000
VERSION     DADMHM010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3831)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3831)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3831
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.271"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..352
                     /locus_tag="JN125_003913"
     CDS             <1..352
                     /locus_tag="JN125_003913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005127760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar motor switch FliM family protein"
                     /protein_id="HAY8873502.1"
                     /translation="LPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELV
                     TNFADISLRLSQILKLKPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHL
                     INPILNSLNEEQPK"
     gene            349..762
                     /gene="fliN"
                     /locus_tag="JN125_003914"
     CDS             349..762
                     /gene="fliN"
                     /locus_tag="JN125_003914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HAY8873503.1"
                     /translation="MSDMNNPADDNNGAMDDLWAEALSEQKSTSSKSAADAVFQQFGG
                     GDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN
                     GYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR"
     gene            765..1130
                     /gene="fliO"
                     /locus_tag="JN125_003915"
     CDS             765..1130
                     /gene="fliO"
                     /locus_tag="JN125_003915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310713.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliO"
                     /protein_id="HAY8873504.1"
                     /translation="MNNHATVQSSTPVSAAPLLQVSGALIAIIALILAAAWQVKRLGF
                     APKRTGVNGLKISASASLGARERVVVVDVEDARLVLGVTAGQINLLHKLPPSAPTEEI
                     PQTDFQSVMKNLLKRSGRS"
     gene            1130..1867
                     /gene="fliP"
                     /locus_tag="JN125_003916"
     CDS             1130..1867
                     /gene="fliP"
                     /locus_tag="JN125_003916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310714.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HAY8873505.1"
                     /translation="MRRLLSVAPVLLWLVTPLAFAQLPGITSQPLPGGGQSWSLPVQT
                     LVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMS
                     PVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQTREADLGLFARLANTGPLQ
                     GPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIA
                     LPFKLMLFVLVDGWQLLVGSLAQSFYS"
     gene            1877..2146
                     /gene="fliQ"
                     /locus_tag="JN125_003917"
     CDS             1877..2146
                     /gene="fliQ"
                     /locus_tag="JN125_003917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013365797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HAY8873506.1"
                     /translation="MTPESVMMMGTEAMKVVLALAAPLLLVALVTGLIISILQAATQI
                     NEMTLSFIPKIIAVFIAIIIAGPWMLNLLLDYVRTLFTNLPYIIG"
     gene            2155..2940
                     /gene="fliR"
                     /locus_tag="JN125_003918"
     CDS             2155..2940
                     /gene="fliR"
                     /locus_tag="JN125_003918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HAY8873507.1"
                     /translation="MMQVTSDQWLSWLSLYFWPLLRVLALISTAPILSERSVPKRVKL
                     GLAMMITFVIAPSLPANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEII
                     GLQMGLSFATFVDPASHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG
                     GEPLNSNAFLALTKAGSLIFLNGLMLALPLITLLLPLNLALGLLNRMAPQLSIFVIGF
                     PLTLTVGISLMAALMPLIAPFCEHLFSEMFNLLADIISELPLI"
     gene            3230..>3831
                     /gene="rcsA"
                     /locus_tag="JN125_003919"
     CDS             3230..>3831
                     /gene="rcsA"
                     /locus_tag="JN125_003919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator RcsA"
                     /protein_id="HAY8873508.1"
                     /translation="MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD
                     SQRPSVVFINEDCFIHDASNSQHIKHIKHIINQHPNTLFIVFMAIANVHFDEYLLARK
                     NLLISSKSIKPESLDNILGDILKKETTITSFLNMPTLSLSRTESSMLRMWMAGQGTIQ
                     ISDQMNIKAKTVSSHKGNIKRKIKTHNKQVIYHVVRLTDNV"
BASE COUNT          909 a          921 c          950 g         1051 t
ORIGIN      
        1 tctgccattc agcatgatcg agccgctacg ggaattgttg gttaacccgc cgctggaaaa
       61 ctcgcgtaat gaagatcaga actggcgcga taacctggtg cgccaggtgc agcattcaca
      121 gctggagctg gtcaccaact ttgccgatat ctcgctacgc ctgtcgcaga ttttaaaact
      181 gaaacccggc gacgtcctgc cgatagaaaa acctgatcgc atcatcgccc atgttgacgg
      241 cgtcccggtg ctgaccagtc agtacggcac tctcaacggt cagtatgcgt tacggataga
      301 acatttgatt aacccgattt taaattctct gaacgaggaa cagcccaaat gagtgacatg
      361 aataatccgg ccgatgacaa caacggcgca atggacgatc tgtgggctga agcgttgagc
      421 gaacaaaaat caaccagcag caaaagcgct gccgacgcgg tgttccagca atttggcggt
      481 ggtgatgtca gcggaacgtt gcaggatatc gacctgataa tggatattcc ggtcaagctg
      541 accgtcgagc tgggccgtac gcggatgacc atcaaagagc tgttgcgtct gacgcaaggg
      601 tccgtcgtgg cgctggacgg tctggcgggc gaaccactgg atattctgat caacggttat
      661 ttaatcgccc agggcgaagt ggtggtcgtt gccgataaat atggcgtgcg gatcaccgat
      721 atcattactc cgtctgagcg aatgcgtcgc ctgagccgtt agtgatgaat aaccacgcta
      781 ctgtgcaatc ttccacgccg gtttctgctg cgccactgct gcaggtcagc ggcgcactca
      841 tcgccattat tgccctgatc ctcgctgctg cctggcaggt aaaacggttg ggatttgccc
      901 cgaaacgcac tggcgttaac ggtctgaaaa ttagcgccag tgcttcgctg ggcgcgcgtg
      961 aacgggttgt ggtggtcgat gtggaagatg cacggctggt gctcggcgtt accgcagggc
     1021 aaatcaatct gctgcataaa cttccccctt cagcaccaac agaagagata ccgcagaccg
     1081 attttcagtc ggtcatgaaa aatttgctta agcgtagtgg gagatcctga tgcgtcgttt
     1141 gttgtctgtc gcacctgtcc ttctctggct ggttacgccc ctcgccttcg cgcaactgcc
     1201 gggtatcacc agccagccgc tgcctggcgg tggacaaagc tggtcgctcc cggtgcagac
     1261 gctggtgttc atcacctcgt tgacgtttat tccggcaatt ttactgatga tgaccagttt
     1321 cacccgcatc atcattgttt ttggtttatt gcgtaacgcg ctgggaacgc cctccgcgcc
     1381 acctaaccag gtattgctgg ggctggcact atttttgacc ttttttatta tgtcaccggt
     1441 gatcgacaaa atttatgtcg atgcgtacca gccattcagc gaagagaaaa tatcaatgca
     1501 ggaggcgctg gaaaaagggg cgcagccgct acgtgagttt atgctgcgtc agacccgtga
     1561 ggcagattta gggttgtttg ccagactagc gaataccggc ccgttgcagg gacctgaagc
     1621 cgtgccgatg cgcattttgc tcccggccta cgtgaccagc gagttgaaaa ccgcatttca
     1681 gataggcttc acgattttca ttcctttttt gattatcgac ctggtgattg ccagcgtgtt
     1741 gatggcattg gggatgatga tggtcccccc cgccaccatt gctctgccct ttaaactgat
     1801 gctgtttgta ctggtggatg gctggcaatt gctggtcggt tcgctggcgc agagctttta
     1861 cagctagaga ggcaaaatga cacctgaatc ggtcatgatg atggggactg aagcgatgaa
     1921 agtcgtgctg gcactggctg ccccgctgtt gctggtggcg ctggtcacgg gccttatcat
     1981 cagtattttg caggccgcca cgcagatcaa cgaaatgacg ctgtcgttta ttccaaaaat
     2041 catcgccgta tttattgcca ttattattgc cggaccgtgg atgctcaatc tgttgctgga
     2101 ttacgtccgc accttgttca ctaacctgcc gtatatcatc gggtaggccg tacaatgatg
     2161 caggtgacaa gcgatcaatg gctttcctgg ttaagcctgt acttctggcc gttactgcgc
     2221 gtgctggcgc tcatttctac cgcaccaatt ctgagcgaac gcagcgtgcc gaaacgggta
     2281 aaactggggc tggcaatgat gatcacgttc gtcattgccc catcattacc tgccaacgat
     2341 gttcctgttt tttcgttctt tgctctgtgg ctggccgtgc agcagatcct gatcggcatt
     2401 gcgcttggtt ttaccatgca atttgccttt gccgctgtgc gaaccgctgg cgaaattatc
     2461 ggtctgcaaa tggggctgtc atttgcgacg tttgtcgatc cggccagcca tctcaatatg
     2521 cccgttttag cgcgtatcat ggatatgctg gcgttactgc tgttcctgac atttaacggt
     2581 catttatggt tgatttcact gctggtcgat acctttcaca ccctgccaat tggtggcgaa
     2641 ccgttgaaca gcaatgcgtt tctggcactc accaaagcgg ggagtttgat tttccttaac
     2701 gggctgatgc tggcgttacc gctcattact ctgctgctgc ccctgaatct ggcattaggt
     2761 ttactgaatc gtatggcccc gcaattatcc atttttgtta ttggatttcc attaactctg
     2821 actgtcggta tctctttaat ggcggcatta atgccgttaa ttgcaccttt ttgcgaacat
     2881 ttattcagtg agatgtttaa tttgctggct gatattatta gtgaattgcc attaatataa
     2941 ttccgtaacg tttatcatgt tatcctaagg attatccgaa aaataatacc tacgaacatc
     3001 ttccaggata ctcctgcggc gaaatatttg ttttaagctc actcacatat cgcaacattt
     3061 actttacttt aagacaattc caggcaaatt atacaacact ttacgggata gtaagtccgc
     3121 ctgaaaaatc gcgagagtgg cgcattaggt gacccatgtt gttccgttta gtcatgatga
     3181 aatattcagg taaggggaat tatcgttacg cattgagtga gggtatgcca tgtcaacgat
     3241 tattatggat ttatgtagtt acacccgact aggtttaacc gggtatctgt tgagtagagg
     3301 ggttaaaaaa agagaaatca acgacattga aaccgttgat gaccttgcca tagcttgtga
     3361 ttcacagcgc ccttcagtgg tgtttattaa tgaggactgt ttcatccatg atgcttctaa
     3421 cagtcagcac atcaagcaca tcaagcacat cattaatcaa catcccaata cgttatttat
     3481 cgtttttatg gcaattgcca atgttcattt tgatgaatat ctattggcca gaaaaaattt
     3541 attgataagt tctaaatcga ttaaaccgga atctctcgac aatatccttg gcgatattct
     3601 gaaaaaagag acaacgataa cctctttttt aaatatgccg acgttatcat tgagccgaac
     3661 cgaatcgagt atgttgcgaa tgtggatggc aggtcaggga accattcaaa tctctgacca
     3721 aatgaatatc aaagccaaga ccgtttcatc gcataaaggt aatattaaac gtaagatcaa
     3781 aacgcataat aaacaggtta tctaccatgt cgtccgactg acggataatg t
//
LOCUS       DADMHM010000267         3757 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.272, whole genome shotgun sequence.
ACCESSION   DADMHM010000267 DADMHM010000000
VERSION     DADMHM010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3757)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3757)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3757
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.272"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(74..292)
                     /gene="osmB"
                     /locus_tag="JN125_003920"
     CDS             complement(74..292)
                     /gene="osmB"
                     /locus_tag="JN125_003920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmotically-inducible lipoprotein OsmB"
                     /protein_id="HAY8873509.1"
                     /translation="MFVTSKKMTAAVLAITLAMSLSACSNWSKRDRNTAIGAGAGALG
                     GAVLTDGSTLGTLGGAAVGGVIGHQVGK"
     gene            complement(561..1310)
                     /locus_tag="JN125_003921"
     CDS             complement(561..1310)
                     /locus_tag="JN125_003921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HAY8873510.1"
                     /translation="MNSRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKL
                     SYLRRAHGFAVSLDSDDVETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNALLA
                     RTLGEQKKNVTIITVSSYIAHLLKDAPCEVILLGGVYQKKSESMVGPLTRQCIQQVHF
                     SKAFIGIDGWQPETGFTGRDMMRTDVVNAVLEKECEVIVLTDSSKFGAVHSYSIGPVE
                     RFNRVITDSKIRASDLMHLEHSKLTVHVVDI"
     gene            complement(1400..1573)
                     /locus_tag="JN125_003922"
     CDS             complement(1400..1573)
                     /locus_tag="JN125_003922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873511.1"
                     /translation="MSEFDAQRVAERIDIVLDILVAGDYHSAIHNLEILKAELLRQVA
                     ESTPDIPKAPWEI"
     gene            complement(1720..3705)
                     /gene="pdeR"
                     /locus_tag="JN125_003923"
     CDS             complement(1720..3705)
                     /gene="pdeR"
                     /locus_tag="JN125_003923"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic di-GMP phosphodiesterase"
                     /protein_id="HAY8873512.1"
                     /translation="MKTVRESTTLYNFLGSHNPYWRLTESSDVLRFSTTETTEPDRTL
                     QLSAEQAARIREMTVITSSLMMSLTVDESDLSVHLVGRKINNREWAGNASAWHDTPAV
                     ARDLSHGLSFAEQVVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQSVFKLF
                     MSRREAAASRRNNRVFFRSGNAYKVELWIPTCKGQRLFLFRNKFVHSGSGKNEIFLIC
                     SGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDN
                     FKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMA
                     SRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQF
                     CVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWRGEVRSLEALVRWQSPER
                     GLIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGINLRVAVNISARQLADQT
                     IFTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGPGY
                     SSLSQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKE
                     DAFLTKNGINERQGFLFAKPMPAVAFERWYKRYLKRA"
BASE COUNT         1021 a          905 c          855 g          976 t
ORIGIN      
        1 tattcagtta tttcgtactg aacaaaatca agcgtattat aattgcgagt cgataatcga
       61 catttattta cgattattta ccgacctggt gaccaataac accaccgaca gctgcaccac
      121 ctaatgtacc caacgtactg ccatcggtca gtactgcacc gcctaatgcc cctgcacccg
      181 cgccgattgc ggtgttgcgg tcccgtttag accagttaga acaggcactc agagacattg
      241 ccaaagtaat tgccagaaca gccgcggtca tttttttgct cgttacaaac ataatactct
      301 ctcctgaatt tatgattcac ggaagtaagc tctctataac tataatagct aagaataagc
      361 ctggtgaaat tattccgtga aatctgctcg cgcgcagggt tatatcacgc aggtgataat
      421 gaattcctgt tatatcgctg ataataattt tatatcttaa gcgtgttaat aacaggtaaa
      481 tagtcttaat tatcaaccag gaatcatctt agagcggatg atttgccaaa ctgcaaatca
      541 tccgtagaga agggaaatgg ttaaatgtca acgacgtgaa cggtgagttt actgtgctca
      601 agatgcatca gatcgctggc gcgtattttc gaatcggtaa tcacgcgatt gaatcgctca
      661 acgggaccga tggagtatga atgtacagca ccaaatttcg agctgtcagt caggactatc
      721 acttcgcact ctttttccag cacggcattg accacatcgg tacgcatcat atcgcgaccg
      781 gtgaatccag tttcaggttg ccagccatca ataccaataa atgctttgct gaaatgcacc
      841 tgctggatgc actggcgtgt caacgggcca accatacttt cgcttttttt ctggtacacg
      901 ccaccgagca aaatgacttc acaaggcgcg tctttcagca aatgcgcgat gtagctgctg
      961 accgtgatga tagtgacatt tttcttctgc tcccccagag tccgggcgag cagggcattg
     1021 ctgctgccat tttcgataaa gatggtttcg cccggttgaa ccagtgacgc ggcaaactcg
     1081 gcgagttcac gcttcagcgt atagttgctc atcatacggg tttcgacgtc atcactatca
     1141 agcgaaactg caaagccatg tgcacggcgg aggtaactca gtttttcgag ggtgttgaga
     1201 tcctggcgaa tggtaacttc agaaactcca gtggcttttg ccagatcggt tacgctaacc
     1261 tgaccctggt caatgaccat ctgtagaata gtttgttgtc gggaattcat cgctgtaatt
     1321 cttataacgt tataatacta aataaaaaaa tactgacgcg ccgggcatcc tcaaatagga
     1381 aaacctgaag gcacgattgt taaatctccc acggtgcctt cgggatgtct ggcgtagatt
     1441 cagcaacctg gcgcaagagt tctgctttaa gtatctcgag attatggatc gcagagtggt
     1501 aatcgcctgc cacaaggata tctaacacaa tatcaatacg ttcggcaacg cgctgggcat
     1561 caaattcaga catcaaggac atccttatag caaaagtgga aaatgaataa tgcaaaaatt
     1621 gccgctaaaa gagaagtgtt taacagcaac ggctaattat catctaggaa tacgatatat
     1681 aatgacggga tatagcgcta agtatatata ttcatctact tatgcgcgct tcagatagcg
     1741 tttataccag cgttcgaagg cgacggcggg catcggtttg gcaaacaaaa atccttgccg
     1801 ctcattgatc ccgttcttgg ttaaaaaagc atcttccttt gcactctcta caccttcggc
     1861 gatcacctga agattcaatg cctgggccac agcgacgatc gcccggacca gtgactgcga
     1921 gacaggttgt ttgtgaatat ctcgaacaaa aacctggtca agtttgatgg catcgatcgg
     1981 aaagcgcgcc agttgcgaaa gtgaagagta gccgggacca aaatcatcca gatgcacttg
     2041 cgcacctagt tggctaaatt gttgaataac agacagtgcc agttcatcat tctcaatcag
     2101 acaactctct gtcagttcaa catctatagg gcagtattca aaattgagtt cctggagaac
     2161 ctgtttcagg gcggtgaaaa tggtttgatc ggcgagctga cgtgcagaaa tatttaccgc
     2221 cactcgcagg tttatgcctt tatcccgcca ctttgccacc tggcgtacga catcgagaat
     2281 cacccaacgg cctaaaggca caattagccc tgactcttcg gcgtaggaaa tgaagtccaa
     2341 cggtggaatc aacccacgtt caggtgactg ccaacgtact agtgcttcca gactgcgcac
     2401 ttcgccacgc caggtgattt tcggttgata gtgaataacc aactgatcgt tttccagtgc
     2461 tttacgcaag ttggtatcca gccagagata ttcaaatacc cgttgattca tttctggggt
     2521 aaaaacgcaa aattgtcctc gtccgccttc cttcgctgtg tacattgctg tgtcggcgtg
     2581 acgaataata gccgtgctgt ctgaaccatg ttcgggagag agtgcaatac ctactgaaca
     2641 gctggtataa acttcaatta aaccaatgcg aaaggggagc cgtaagcggg tcaaaattcg
     2701 tgatgccatt gcttccagcg cgctttgtga ggtgttggat gccagtacca gaaactcatc
     2761 cccacctgga cgcgccaaca cctggtcatg ttcgagacag cttaaaatag ccaatgacac
     2821 gtcgcgtaat aactggtcac caaacaaatg cccataggcg tcgttgacct ttttgaaatt
     2881 atccaaatca agatacacaa ccccaacttt attgttatct gcatgattaa tagcgtgatc
     2941 gattaaatcc tgcattgcgt tacgattcgg cagtccggtg atactgtcgg tatttgccag
     3001 aatacgcagt cgctcctgag cgcggcgctc ttcggtaatg tcggtgccgg aacagattaa
     3061 aaaaatctcg tttttgccac tgccgctgtg gacaaattta ttgcgaaaca gaaacagccg
     3121 ctggccttta catgttggta tccacagttc gactttatat gcattgccgc ttcgaaaaaa
     3181 tacacggtta ttgcgcctgg atgccgcagc ttcacgacgg ctcataaaca gtttaaacac
     3241 gctttggcca atgacgtcgt gttctttcaa cccagtgtaa tcttcacata accgattgaa
     3301 gcgttggata ttcccccggc tgtcgagaat cactattgcg gaatgtgctt cagaaactac
     3361 ctgctcagca aaggaaagcc cgtgtgataa atcacgagca actgccggtg tgtcatgcca
     3421 tgcagacgcg ttgccagccc attcccggtt attgattttt cgtcctacca gatgcacaga
     3481 aagatcgctc tcatcgacgg tcagactcat catcaggctg gaggtgatga ccgtcatttc
     3541 cctgatgcga gcagcctgtt cggcagataa ctgcaaagta cgatcaggtt ctgtggtttc
     3601 ggtggtagaa aagcgcaaaa catcgctgct ttccgtcaac cgccagtatg gattgtgcga
     3661 tccgagaaag ttgtacaacg ttgtggactc cctaacggtt ttcatgatgc atatcctccg
     3721 gttaacagcg gagtccgcgg ttaaataaaa ggaacaa
//
LOCUS       DADMHM010000268         3744 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.273, whole genome shotgun sequence.
ACCESSION   DADMHM010000268 DADMHM010000000
VERSION     DADMHM010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3744)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3744)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3744
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.273"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..480
                     /locus_tag="JN125_003924"
     CDS             <1..480
                     /locus_tag="JN125_003924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016246021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde ferredoxin oxidoreductase"
                     /protein_id="HAY8873513.1"
                     /translation="AKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFF
                     KAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVF
                     TEGTDKMDRDDMHASLTMFYKEMGWDPQLGSPTRETLQRLGLEDIAADLAAHNLLPV"
     gene            493..1131
                     /locus_tag="JN125_003925"
     CDS             493..1131
                     /locus_tag="JN125_003925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707570.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdhW family putative oxidoreductase system
                     protein"
                     /protein_id="HAY8873514.1"
                     /translation="MNHRDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAE
                     FIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLESIKQNGDYADIACMTGSQDDYYYS
                     TQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEA
                     AIAAMDVAPEYADIRQVESSTAELYLFSERFMTYGKAYGLCEWFEVEQFQNP"
     gene            1195..1863
                     /locus_tag="JN125_003926"
     CDS             1195..1863
                     /locus_tag="JN125_003926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416186.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HAY8873515.1"
                     /translation="MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDES
                     RCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCID
                     VCPTGASWRDEQGLVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLA
                     KGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIK
                     KENV"
     gene            1860..2645
                     /locus_tag="JN125_003927"
     CDS             1860..2645
                     /locus_tag="JN125_003927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiosulfate reductase cytochrome B subunit"
                     /protein_id="HAY8873516.1"
                     /translation="MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVL
                     GLHALLRARGVKKSATDHGEKVYLYSKAVRLWHWSNALLFVLLLASGLINHFAMVGAT
                     AVKSLVAVHEVCGFLLLACWLGFVLINAVGDNGHHYRIRRQGWLERAAKQTRFYLFGI
                     MQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYW
                     LLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH"
     gene            2649..3461
                     /locus_tag="JN125_003928"
     CDS             2649..3461
                     /locus_tag="JN125_003928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873517.1"
                     /translation="MIITRADLREWRIGAVMYRWFLRHFRRGGSYADIHHALIEEGYT
                     DWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGEIPFCSQFARSDDHARIGCCED
                     NARIAIAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRI
                     ANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTG
                     VVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRTGVRYRLNEQHQFVEC"
     gene            complement(3473..>3744)
                     /locus_tag="JN125_003929"
     CDS             complement(3473..>3744)
                     /locus_tag="JN125_003929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-NAD(P)-binding protein"
                     /protein_id="HAY8873518.1"
                     /translation="RPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVA
                     FGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD"
BASE COUNT          892 a          874 c         1039 g          939 t
ORIGIN      
        1 gctaagtggt cgctgttgcg ggtctgtttg cataacgccg tcaccctgtg taactgggtc
       61 tggccaatga ccgtttcgcc gctgaaaagc cgtaattacc ggggcgatct ggcgcttgaa
      121 gccaaattct tcaaagcgat caccggcgaa gagatgactc aggaaaaatt agatttagct
      181 gcagagcgta tctttacgtt gcatcgtgcc tacacggtaa aacttatgca aaccaaagat
      241 atgcgtaatg aacacgatct tatctgttcc tgggtattcg acaaggatcc gcagatcccg
      301 gtctttactg aaggtactga caaaatggat cgtgacgata tgcatgcttc gctcacgatg
      361 ttctacaaag aaatgggctg ggacccacag cttggtagtc ccacccgcga aacattgcag
      421 cgtctggggc tggaagatat tgccgccgat ctggcagcac acaatctact gcctgtgtaa
      481 ggaatgggtg agatgaacca tcgggatgaa ttgccgttag cgaaagtcag cgaagttgac
      541 gaggcgaagc ggcaatggtt acaggggatg cgtcaccccg ttgatacggt aaccgaacca
      601 gaaccggctg aaatcctggc agagttcatt cgccagcatt ctgcggctgg gcagctggtg
      661 gcgcgcgccg tgtttctctc gccaccctat tcggttgcag aagaggagct gtcagttttg
      721 ctggaaagca ttaagcagaa cggagactac gctgatatcg cttgtatgac gggaagccag
      781 gatgattact attactcaac gcaggccatg agtgaaaact acgcggcgat gtctttgcaa
      841 gttgtggagc aggacatttg tcgcgccatt gcacacgccg ttcgttttga gtgccagaca
      901 tatcctcgtc cttacaaagt cgccatgctg atgcaagcgc catattactt ccaggaagcg
      961 cagattgaag ccgcgatcgc cgcgatggat gttgcacctg aatatgccga tatacggcag
     1021 gtggagtcat cgacggcgga gttgtacttg tttagtgagc gatttatgac ctatggcaag
     1081 gcttatggct tatgcgaatg gttcgaggta gagcagtttc agaacccctg aaatttcagg
     1141 gagatgtcat ggatagggtg gacagttgca gccactgcat taggggataa tcagatgtcc
     1201 ttcactcgac gcaaatttgt tctggggatg ggaacagtaa tcttttttac tggttctgcg
     1261 tcttctctgt tagcgaacac gaggcaagaa aaggaagttc ggtatgccat gattcatgac
     1321 gagtcacggt gcaatggctg taatatttgc gcccgcgcat gccgtaaaac taaccacgtc
     1381 cccgctcagg gaagccgttt atcgatagca cacattccag tcaccgataa cgacaacgaa
     1441 acgcagtatc acttttttcg ccagtcatgt cagcactgcg aagatgctcc gtgcatcgac
     1501 gtttgcccga cgggggcatc gtggcgtgat gagcaggggc tcgtgcgggt agaaaaatcg
     1561 cagtgcatcg gctgcagtta ttgcattggc gcttgtccgt accaggttcg ctaccttaac
     1621 cctgtcacta aagtggcaga taaatgtgat ttctgcgctg agtcccgact ggcaaaaggc
     1681 tttccgccca tttgcgtcag cgcctgtccg gaacacgcat tgatctttgg tcgcgaagat
     1741 agcccagaaa ttcaggcgtg gttgcaggat aataaatact atcaatatca gctacctggt
     1801 gccgggaaac cgcatctgta tcgccggttc ggtcaacatt tgattaaaaa ggaaaatgta
     1861 tgaacccgtc gcaacatgct gaacagtttc agagccagtt agcgaactat gtgccacagt
     1921 tcactcccga attttggccg gtgtggttga tcattgccgg agtattgctg gttgggatgt
     1981 ggttggtgct ggggctgcac gccttgcttc gtgctcgtgg cgtgaagaaa tcagccaccg
     2041 atcatggtga gaaggtttat ctttacagca aagcggtcag attatggcac tggtcgaatg
     2101 cgttactctt tgtattgttg ctggcaagtg ggctgataaa tcactttgcg atggtgggcg
     2161 caactgcggt taaaagtctg gttgcggtgc atgaagtttg cggatttttg ttactggcat
     2221 gctggctcgg ctttgtgctg atcaatgccg ttggggataa tggtcaccac tatcgcattc
     2281 gtcgtcaggg gtggctggaa cgagcggcaa aacaaacgcg attttatttg tttggcatta
     2341 tgcaggggga agaacatcct ttcccggcaa caacacagtc taaatttaat cccttacagc
     2401 aggtcgccta tgttggtgtc atgtatggat tgctgccgtt gttactattg acggggctgt
     2461 tgtgtctcta tccgcaagcc gtgggagatg tgtttcctgg cgtaagatac tggttattgc
     2521 aggcgcattt tgctctggca tttataagcc tcttttttat cttcggacat ctttatcttt
     2581 gcaccacggg gcgtacgcca cacgaaacct ttaaaagcat ggtcgatggc tatcaccggc
     2641 actaacgaat gatcattaca cgagcagacc tgcgagaatg gcgtatcgga gcggtgatgt
     2701 atcgctggtt cctgcgccat ttccgacgcg gcggtagtta tgccgatatt catcatgcac
     2761 tgattgagga aggatatacg gactgggcgg agagtctggt tgagtatgcg tggaaaaaat
     2821 ggctggcgga tgaaaacttc gcgcatcagg aagtttcctc tatgcaaaaa ctggccacag
     2881 accccggaga gataccattt tgcagtcagt ttgcccgcag cgacgatcat gctcgcatcg
     2941 gctgttgtga ggataacgcc cgaatcgcaa tcgctgggta tgccgcgcaa attgccagta
     3001 tgggttatag cgtgcggatt ggaagtgtcg gctttaacag tcacattggc agctccggtg
     3061 aacgcgcacg ggttgctgta accggtaatt cttcgcggat aagcagcgct ggagatagta
     3121 gtcggattgc gaataccgga atgcgagtac gcgtttgtac attgggtgaa cggtgtcatg
     3181 tcgccagtaa tggtgacctg gtgcaaatcg ccagctttgg cgcaaacgcc agaattgcca
     3241 acagcggcga caatgtacac atcattgcca gcggtgaaaa ttcaacggta gtgagcacgg
     3301 gcgtggtcga ctcaattatt ctcgggccag ggggaagcgc cgcactggca tatcatgacg
     3361 gcgaaagagt tcgcttcgcc gtcgccattg aaggtgaaaa caatattcga accggagtcc
     3421 gctatcgtct taatgaacag catcagtttg ttgagtgctg atagctttac ctttaatcaa
     3481 acgaaagacg ccgacgtgca cgggatgcag gttttacgac cgcccgagcc atcgcctcac
     3541 caatttctgc acatgccgta agtccctgaa cgaaaggctg gtcgtgcatc aaccagggca
     3601 acgcgccgaa cgctacgcgt ccacgaatat cttcgggttg ctgtaacgta taatcttcgc
     3661 caacatcagg gatttcatcc cctgttttct gtaattgctc gcgtagccca gggaaaggaa
     3721 tatctttcac tttaagcgga cgct
//
LOCUS       DADMHM010000269         3737 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.274, whole genome shotgun sequence.
ACCESSION   DADMHM010000269 DADMHM010000000
VERSION     DADMHM010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3737
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.274"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..272
                     /locus_tag="JN125_003930"
     CDS             <1..272
                     /locus_tag="JN125_003930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416627.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF1307 domain-containing protein"
                     /protein_id="HAY8873519.1"
                     /translation="SIGATTKEDAAKTLEPLSAKYKNIAGVEEKLTYTDTYAQENVTI
                     DMEKVDFKALQGISGINVSAEDTKKGITMAQMELVMKAAGFKEVK"
     gene            complement(313..783)
                     /locus_tag="JN125_003931"
     CDS             complement(313..783)
                     /locus_tag="JN125_003931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1456 family protein"
                     /protein_id="HAY8873520.1"
                     /translation="MLSNDILRSVRYILKANNNDLVRILALGNVEATAEQIAVWLRKE
                     DEEGFQRCPDIVLSSFLNGLIYEKRGKDESAPALEPERRINNNIVLKKLRIAFSLKTD
                     DILAILTEQQFRVSMPEITAMMRAPDHKNFRECGDQFLRYFLRGLAARQHVKKS"
     gene            complement(830..1549)
                     /gene="yehT"
                     /locus_tag="JN125_003932"
     CDS             complement(830..1549)
                     /gene="yehT"
                     /locus_tag="JN125_003932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310963.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator BtsR"
                     /protein_id="HAY8873521.1"
                     /translation="MIKVLIVDDEPLARENLRVFLQEQSDIEIVGECSNAVEGIGAVH
                     KLRPDVLFLDIQMPRISGLEMVGMLDPEHRPYIVFLTAFDEYAIKAFEEHAFDYLLKP
                     IDEERLEKTLARLRQERSKQDVSLLPENQQALKFIPCTGHSRIYLLQMKDVAFVSSRM
                     SGIYVTSHEGKEGFTELTLRTLESRTPLLRCHRQYLVNLAHLQEIRLEDNGQAELILR
                     NGLTVPVSRRYLKTLKEAIGL"
     gene            complement(1546..3231)
                     /gene="btsS"
                     /locus_tag="JN125_003933"
     CDS             complement(1546..3231)
                     /gene="btsS"
                     /locus_tag="JN125_003933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component regulatory system sensor histidine
                     kinase BtsS"
                     /protein_id="HAY8873522.1"
                     /translation="MYDFNLVLLLLQQMCVFLVIAWLMSKTPLFIPLMQVTVRLPHKF
                     LCYIVFSIFCIMGTWFGLHIDDSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSM
                     GGMTALSCMISTIVEGLLGGLVHSILIRRGRTDKVFNPITAGAVTFVAEMVQMLIILA
                     IARPYEDAVRLVSNIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSATALKVAAS
                     TEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDREKLLAFTGIGDDHHIPGKPISST
                     YTLKAIETGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKNR
                     LFSSINRTLGEGIAQLLSAQILAGQYERQKAMLTQSEIKLLHAQVNPHFLFNALNTIK
                     AVSRRDSEQASQLVQYLSTFFRKNLKRPSEFVTLADEIEHVNAYLQIEKARFQSRLQV
                     NIAIPQELSQQQLPAFTLQPIVENAIKHGTSQLLDTGRVAISARREGQHLMLEIEDNA
                     GLYQPVTNASGLGMNLVDKRLRERFGDDYGISVACEPDSYTRITLRLPWRDEA"
     gene            3453..3518
                     /locus_tag="JN125_003934"
                     /pseudo
     CDS             3453..3518
                     /locus_tag="JN125_003934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416631.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family DNA-binding transcriptional
                     regulator"
BASE COUNT          998 a          969 c          859 g          911 t
ORIGIN      
        1 cctctattgg tgcaaccacc aaagaagacg ctgccaagac acttgagccg ttaagcgcca
       61 aatacaaaaa catcgcgggt gttgaagaaa aattaaccta taccgatacc tacgcgcagg
      121 aaaacgtgac tatcgatatg gaaaaagtgg attttaaagc cctgcagggt atttcaggaa
      181 tcaacgtttc tgctgaagat accaaaaaag gtatcactat ggcgcaaatg gaactggtga
      241 tgaaagccgc tggttttaaa gaagtgaaat aatctgtcgg cggccatgtt tcgcatggcc
      301 gccatacccg tcttagcttt tcttcacatg ctggcgcgct gccagtccac gcagaaaata
      361 acgtaaaaat tgatcgccgc attcgcggaa gtttttatga tccggtgcac gcatcatcgc
      421 cgtaatttcc ggcatcgaaa cgcggaactg ctgttcggtg aggatcgcca gaatgtcatc
      481 ggttttcagc gaaaacgcga tgcgtaattt ttttagcacg atgttgttat taatgcgacg
      541 ttccggctcc agtgccggag cagactcatc cttgccgcgt ttttcataaa tcaggccatt
      601 gaggaatgac gacaaaacaa tgtccggaca acgctgaaaa ccctcttcgt cttctttacg
      661 tagccagacg gcgatctgtt ccgcggtggc ttcgacatta cccagcgcca gaatacgcac
      721 caggtcatta ttattggctt tcaaaatgta gcgcacgctg cgcagaatat cgttacttag
      781 catgaggcct tcaggtgttg atgaggcaaa aagccatttt agcagtcttt tacaggccaa
      841 tcgcctcttt taaggttttc agataacggc ggctgaccgg cacggttaag ccattacgca
      901 aaatcaactc ggcctggccg ttatcttcca gacgaatctc ctgtaaatgc gcgaggttaa
      961 ccagatactg acgatggcag cgcagtagtg gtgtacgact ttccagggta cgtaatgtca
     1021 attcggtaaa gccctctttc ccttcgtggc tggtaacgta gataccgctc atccgactgc
     1081 tgacaaatgc cacatctttc atttgcagca aataaatccg actatgccca gtacaaggga
     1141 taaatttcag cgcctgttga ttttctggta acagcgaaac atcctgcttg ctgcgttcct
     1201 gccgcaaacg cgccagcgtt ttctccagtc gctcttcatc aattggcttc agcagataat
     1261 caaaggcgtg ttcttcaaag gctttaatgg cgtattcgtc aaacgcggtg agaaaaacaa
     1321 tatacggacg atgttccggg tcgagcatcc ccaccatttc cagaccactg atgcgcggca
     1381 tctggatatc gagaaacagc acatccgggc gcagtttatg caccgcgccg atcccttcca
     1441 cggcgtttga acactcacca acgatttcaa tatcgctctg ctcctgcaaa aatacgcgca
     1501 ggttctcccg tgctaacggt tcatcatcga caattaagac tttaatcatg cctcgtccct
     1561 ccatggtagt cgtaacgtta ttcgggtgta actatcaggc tcacaggcga cgcttatccc
     1621 atagtcatcg ccaaaccgtt cacgtaaacg cttatccacc agattcatcc ccagcccact
     1681 ggcattggtt accggttgat acaaaccggc attgtcttcg atctccagca tcaaatgttg
     1741 cccctcacgt cgggcgctga ttgccactcg ccctgtatcc agcagttgtg atgtcccatg
     1801 tttaatggcg ttttccacta tcggttgcag ggtaaacgcg ggcaattgct gctgggataa
     1861 ttcttgcgga atagcaatgt tgacctgcaa ccgcgactgg aagcgcgcct tttcaatttg
     1921 cagataagcg ttcacatgtt caatttcgtc ggcgagagta acaaactccg aaggccgctt
     1981 taagtttttg cggaaaaaag tggaaagata ctgcaccagc tggctggcct gttcgctgtc
     2041 gcgacggctc accgctttaa tggtgttaag cgcattaaac aaaaaatggg ggttcacctg
     2101 ggcgtgaagc agtttgatct ctgactgggt gagcatcgct ttttgccgct catattgccc
     2161 ggcgaggatc tgcgccgaaa gcagttgcgc aatcccctcg cccagcgtgc ggttgattga
     2221 actgaataaa cggtttttgg cttcatacaa tttgatggtg cccatcaccc gctgattttc
     2281 accacgcaac ggaattacca gcgtcgaccc cagtttgcat tgcggatgca aagagcaacg
     2341 ataaggtact tcgttgccat cagcgtagac cacttcaccg gtttcaatcg cttttaaggt
     2401 gtaagtcgaa gatattggtt tgccgggtat atggtggtcg tcaccaattc cggtaaaggc
     2461 cagcaatttc tctcgatcgg taatcgcgac tgcaccaata tccagctcct gatacagcac
     2521 ctgtgccact ttcatgctgt tcacttcgtt aaacccctgg cgcaaaatgc cttccgtcga
     2581 ggcagccact ttcagcgcag tggcagaaaa agccgaagtg tatttttcaa acatcgcgcg
     2641 tttatctagc aatatacgca taaacagcgc cgcgccgacg gtattggtga ccatcattgg
     2701 cgcagcaata ttactcacca gacgcaccgc atcttcataa ggtcgggcga tcgccaggat
     2761 gatcaacatt tgcaccattt cagcgacgaa cgtgacggca ccggcggtaa tggggttaaa
     2821 gactttatca gtgcgcccgc gacggatcag gatgctgtgt accaggccgc cgagcaatcc
     2881 ttcaacgatg gtcgagatca tgcaacttag cgcggtcatg ccccccatcg aatatcgatg
     2941 taacccgccg gtcaggccaa ccagcccacc gacgaccgga ccgccgagta agccgcccat
     3001 gaccgcgcct atcgcacggg tattggcaat agaatcgtca atgtgcaacc caaaccaggt
     3061 gcccatgatg cagaagatgg aaaagacgat gtagcagaga aatttatgcg gcagacgaac
     3121 cgtgacctgc attaacggta tgaataatgg cgttttactc attaaccatg caatgactaa
     3181 aaaaacgcac atctgctgaa gcagcagcaa caccagatta aaatcgtaca tacccgcaaa
     3241 ccacacttcc ctttaaaacg cgtaacatat attgcctgcg tttaactttc tttgaactct
     3301 tgcagaaaaa tgagaattcg tgagtacaat cactcaaaat cgcctggcaa aaataaaatc
     3361 accctataaa tgcacaaaaa acgggcaaaa ctacctggtt cgcaaaactg cgtctaaagt
     3421 taaaccggga cctcgcgagc aagggtgaga cgatggcgct ttacacaatt ggtgaagtgg
     3481 cgttgctttg tgatattaac cctgtcacgt tacgcgcgtg acgcaacatt tttaaaaatc
     3541 gacgaagatc gtccaggagc gccgtttttc aagggttgga tagatgattc gtttaccatg
     3601 tcgacgaact tcgacgaatt tcgccgataa aaagtgtccc atacatgccc cattgatgcc
     3661 ccataaacaa tatcaggaat tgacactggt tatccataca gataaaaata acacctgtac
     3721 ataactacag ttacagg
//
LOCUS       DADMHM010000270         3725 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.275, whole genome shotgun sequence.
ACCESSION   DADMHM010000270 DADMHM010000000
VERSION     DADMHM010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3725)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3725)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3725
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.275"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(321..1016)
                     /locus_tag="JN125_003935"
     CDS             complement(321..1016)
                     /locus_tag="JN125_003935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414842.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HAY8873523.1"
                     /translation="MDNRGEFLNNVAQALGRPLRLEPQAEDAPLNNYANERLTQLNQQ
                     QRCDAFIQFASDVMLTRCELTSEAKAAEAAIRLCKELGDQSVVISGDTRLEELGISER
                     LQQECNAVVWDPAKGAENISQAEQAKVGVVYAEYGLTESGGVVLFSAAERGRSLSLLP
                     ESSLFILRKSTILPRVAQLAEKLHQKAQAGERMPSCINIISGPSSTADIELIKVVGVH
                     GPVKAVYLIIEDC"
     gene            complement(1009..2436)
                     /locus_tag="JN125_003936"
     CDS             complement(1009..2436)
                     /locus_tag="JN125_003936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HAY8873524.1"
                     /translation="MSIKTSNTDFKTRIRQQIEDPIMRKAVANAQQRIGANRQKMVDE
                     LGHWEEWRDRAAQIRDHVLSNLDAYLYLLSEKVTQNGGYVWFAKNKEDATRYILQVAQ
                     RKNARKVVKSKSMVTEEIGVNHVLQDAGIQVIETDLGEYILQLDQDPPSHVVVPAIHK
                     DRHQIRRVLHERLGYEGPETPEAMTLFIRQKIREDFLSAEIGITGCNFAVAETGSVCL
                     VTNEGNARMCTTLPKTHIAVMGMERIAPTFAEVDVLITMLARSAVGARLTGYNTWLTG
                     PREAGHIDGPEEFHLVIVDNGRSEVLASEFRDVLRCIRCGACMNTCPAYRHIGGHGYG
                     SIYPGPIGAVISPLLGGYKDFKDLPYACSLCTACDSVCPVRIPLSKLILRHRRVMAEK
                     GITAKAEQRAIKMFAYANSHPGLWKVGMMAGSHAASWFINGGKTPLKFGAISDWMEAR
                     DLPEADGESFRSWFKKHQAQEKKNG"
     gene            complement(2447..3166)
                     /locus_tag="JN125_003937"
     CDS             complement(2447..3166)
                     /locus_tag="JN125_003937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HAY8873525.1"
                     /translation="MNVNFFVTCIGDALKSRMARDSVLLLEKLGCRVNFPEKQGCCGQ
                     PAINSGYIKEAIPGMKNLIAALEDNDDPIISPAGSCTYAVKSYPTYLADEPEWASRAE
                     KVAARMQDLTSFIVNKLGVVDVGASLQGRAVYHPSCSLARKLGVKDEPLTLLKNVRGL
                     ELLTFAEQDTCCGFGGTFSVKMAEISGEMVKEKVGHLMEVRPEYLIGADVSCLLNISG
                     RLQREGQKVKVMHIAEVLMSR"
BASE COUNT          955 a         1007 c          776 g          987 t
ORIGIN      
        1 tcagtaagtt ggagtcatta cctgttttgc cttgtcaaaa aaatggtaga tgaataccaa
       61 caaaactctg ggcagtaata aacaacattc tgatagagag tgcctgtata aagctgaagt
      121 gacaatgacc gggaagggaa cccgttttca ggaatggatg cctgtctttt tcactgtaaa
      181 tatcctggca ttactaatgc caggatattt acagaagagc agcataacca tgacggaacg
      241 gggttaagtc aggttgtcct taacgctatt ttcaacctcg tatgccttct tcaggtttat
      301 gttcagatct catatctctc tcagcaatcc tcaataatca gatacaccgc tttcaccggg
      361 ccatgaaccc cgacgacttt gataagctca atatccgccg ttgaactagg gccgctaatg
      421 atgttaatgc aggacggcat tcgttcaccg gcctgcgctt tctgatgcaa tttttctgcg
      481 agttgcgcta cacgcggcag gattgtgctt ttacgcagga taaaaagaga agattccggg
      541 agcaggctca atgaacgccc gcgctcggcg gcggaaaaaa gaaccacgcc tcccgattcg
      601 gttaaaccat attcagcata cacaacaccc actttagcct gctctgcctg cgagatattc
      661 tcggcacctt tcgccggatc ccaaacaacg gcattgcatt cctgctgcaa acgttcacta
      721 atccccaatt cctccagcct cgtgtcaccg ctaatcacga ccgactgatc tcccagctct
      781 ttacacagac gtattgcagc ttctgccgcc ttcgcctcgc tggtcagctc acagcgcgtc
      841 aacataacat cgctggcaaa ctgaataaac gcgtcacagc gctgctgttg gttaagttgg
      901 gtaagccgct cgttagcata gttgttaagc ggcgcatctt ctgcttgcgg ttcaagtcgc
      961 agcgggcgac ccagtgcctg agcaacgtta ttcaaaaatt cgcctcgatt atccattctt
     1021 tttctcctgc gcctgatgtt tcttaaacca actacggaaa ctctctccgt cagcttcagg
     1081 aagatcgcgt gcttccatcc agtcgctaat cgcgccaaat ttgagtggtg ttttgccgcc
     1141 attgataaac cagcttgccg catgagagcc ggccatcatc ccgactttcc acaatcctgg
     1201 atgactattg gcataagcga acatttttat cgcccgttgc tctgcttttg cggtgatccc
     1261 tttttctgcc atcacccgac gatgacgcaa aatcagtttt gacagcggaa tacgcaccgg
     1321 acacacgctg tcacaagcag tgcataaaga gcaggcgtag ggtaaatctt taaaatcttt
     1381 atagccgcca agtagcggag aaatcaccgc accaattggc cctggataaa tagagccata
     1441 tccatgaccg ccaatatggc gatatgccgg acaagtattc atacaagccc cgcagcgaat
     1501 acagcgcagc acatcccgaa attcagaggc cagcacctca gaacgcccgt tatcgacaat
     1561 aaccagatga aactcttcag gaccatcaat gtgccccgct tcgcgcggtc ctgtcagcca
     1621 ggtgttgtat cccgtcaaac gtgcaccaac ggcactgcgc gccagcatgg tgatcaatac
     1681 atctacctcg gcaaacgtgg gggcaatacg ctccattccc atcactgcaa tatgcgtttt
     1741 aggcagcgtg gtacacattc gcgcattacc ttcattggtc accaggcata ccgaacctgt
     1801 ctctgccacc gcgaaattac agccggtaat acctatttca gcactgagga aatcttcgcg
     1861 gattttttgc cggatgaata aggtcatcgc ttcaggcgtt tccggcccct catagcccag
     1921 acgttcgtgt agcactcgac ggatctgatg gcgatcttta tgaattgccg ggaccacaac
     1981 atgagatggc ggatcttgat ccagctggag aatatattca cccagatcgg tttcaatcac
     2041 ctgaatgcca gcatcctgca acacatgatt gacaccaatc tcttcggtca ccatcgattt
     2101 agatttcacc accttccggg catttttgcg ttgggcaacc tgtaaaatgt agcgggtagc
     2161 gtcttctttg ttttttgcaa accagacgta accgccgttt tgcgtcactt tttctgagag
     2221 caggtacaga taagcgtcga gattactcag aacatgatca cgtatctggg cggcccgatc
     2281 gcgccactcc tcccagtgcc ccaattcatc gaccattttt tgccgatttg ccccaatacg
     2341 ctgctgcgcg tttgccaccg ctttgcgcat gatcggatct tcaatttgct gacggatgcg
     2401 tgtcttaaaa tctgtattac tggttttgat cgacatcttt atatcctcag cggctcatca
     2461 acacttcagc aatatgcatc actttgactt tctgcccttc ccgttgtaat cgcccactga
     2521 tgttcagcag gcaactcacg tcagcaccaa ttaaatactc agggcggact tccatcaggt
     2581 gcccaacctt ttctttcacc atctcgccgg atatttcggc cattttgacc gagaacgtgc
     2641 cgccaaatcc gcagcaggta tcctgttcag caaaggtcaa cagctccagt ccacgcacat
     2701 ttttcagcag cgtaagtggc tcgtccttca ctcccagctt acgggccagg ctacaagatg
     2761 ggtgatacac agctctccct tgcaaactgg cacctacatc gactacccct aatttattaa
     2821 caataaaaga ggtgagatcc tgcatacgcg cggcaacctt ttcggcacgt gatgcccatt
     2881 caggttcatc cgccagatac gtcgggtaac tttttacggc ataggtgcaa gagccagccg
     2941 gtgaaataat gggatcgtcg ttatcctcca gtgcggcgat cagatttttc atccctggaa
     3001 tcgcttcttt gatataaccg ctattgatcg caggctgacc gcagcatccc tgtttctccg
     3061 ggaaatttac gcgacagccg agtttttcca gtagcagcac ggagtctcgt gccattcttg
     3121 atttcagggc gtcaccaata caggtgacaa agaaattgac attcacaact aatactccat
     3181 tacttcatgc ccatttatgc ccgatgtttc ccccccaccg ggggatcaat catcaataaa
     3241 tatggcgttc ttttttaatt ggctagcaac atactacccc tcatttgtat gacaaatgat
     3301 aatctttcac ccaaacgtca aatgcaataa ctaattttat ttctttcggc atcgctcaca
     3361 ttttatggag aaatcgacga tcatttttgg cataagaaat ccatttaaaa atggccacat
     3421 cccttatacc tattcagagc tacttattca ggggttattg agatatacac tgatggtgta
     3481 caaacaaaat caccgacaat aatcacgtat caagtaatag tcgggatttt atttaattga
     3541 agcaatttag tttgtatctt ttatttaatt actaagccag accacttcaa aaaaacatat
     3601 aaaaaagttg gaaatataaa tagctgaaag gctcacaaca cccggaatgc ggattatctt
     3661 tgctccgatt cctggcggtt ttattcaggg tgcaagctgt ctgacccttt cccgggtaat
     3721 gactc
//
LOCUS       DADMHM010000271         3724 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.276, whole genome shotgun sequence.
ACCESSION   DADMHM010000271 DADMHM010000000
VERSION     DADMHM010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3724)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3724)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3724
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.276"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            37..264
                     /locus_tag="JN125_003938"
     CDS             37..264
                     /locus_tag="JN125_003938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YceK/YidQ family lipoprotein"
                     /protein_id="HAY8873526.1"
                     /translation="MRLIVVSIMVTLLSGCGSIISRTIPGQGHGNQYYPGVQWDVRDS
                     AWRYVTILDLPFSLVFDTLLLPIDIHHGPYE"
     gene            complement(265..639)
                     /locus_tag="JN125_003939"
     CDS             complement(265..639)
                     /locus_tag="JN125_003939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309456.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="secY/secA suppressor protein"
                     /protein_id="HAY8873527.1"
                     /translation="MTMYATLEEAIDAAREEFLADNPGIDAEDANVQQFNAQKYVLQD
                     GDIMWQVEFFADEGKEGECLPMLSGEAAQSVFDGDYDEIEIRQEWQEENTLHEWDEGE
                     FQLEPPLDTEEGRAAADEWDER"
     gene            complement(722..1946)
                     /gene="mdtG"
                     /locus_tag="JN125_003940"
                     /pseudo
     CDS             complement(722..1946)
                     /gene="mdtG"
                     /locus_tag="JN125_003940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415571.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdtG"
     gene            complement(2117..3037)
                     /locus_tag="JN125_003941"
     CDS             complement(2117..3037)
                     /locus_tag="JN125_003941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LpxL/LpxP family Kdo(2)-lipid IV(A)
                     lauroyl/palmitoleoyl acyltransferasee"
                     /protein_id="HAY8873528.1"
                     /translation="MTNLPKFSTALLHPRYWLTWLGIGVLWLVVQLPYPVIYRLGCGL
                     GKLALRFMKRRAKIVHRNLELCFPEMSEQERRKMVVKNFESVGMGLMETGMAWFWPDR
                     RIARWTEVIGMEHIRDVQAQKRGILLVGIHFLTLELGARQFGMQEPGIGVYRPNDNPL
                     IDWLQTWGRLRSNKSMLDRKDLKGMIKALKKGEVVWYAPDHDYGPRSSVFVPLFAVEQ
                     AATTTGTWMLARMSGACLVPFVPRRKPDGKGYQLIMLPPECSPPLDDAETTAAWMNKV
                     VEKCIMMAPEQYMWLHRRFKTRPEGVPSRY"
     gene            3262..>3724
                     /locus_tag="JN125_003942"
     CDS             3262..>3724
                     /locus_tag="JN125_003942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-related sulfurtransferase"
                     /protein_id="HAY8873529.1"
                     /translation="MPVLHNRISNDALKAKMLAESEPRTTISFYKYFHIADPKATRDA
                     LYQLFTALNVFGRVYLAHEGINAQISVPASNVETFRAQLYAFDPALEGLRLNIALDDD
                     GKSFWVLRMKVRDRIVADGIDDPHFDASNVGEYLQAAEVNAMLDDPDALFID"
BASE COUNT          917 a          952 c          944 g          911 t
ORIGIN      
        1 cgttatgccg gtattttttt acggaagagg tatcaaatgc gtttaattgt ggtgagcatc
       61 atggtgacct tgctgagtgg ctgtggcagc attattagtc gcactatacc ggggcagggg
      121 catggcaacc aatattatcc cggtgtgcaa tgggatgtgc gtgactccgc ctggcgttat
      181 gtcacaatcc ttgatctgcc attctccctg gtttttgata ctttactgct gccgatcgac
      241 attcatcatg gcccgtatga gtgattaacg ttcatcccac tcatcagctg ctgcgcgtcc
      301 ttcctcggta tccagcggtg gctcaagctg aaattccccc tcgtcccatt catgtaatgt
      361 attctcttcc tgccactcct ggcgtatctc tatctcatca tagtcgccat caaaaacact
      421 ttgcgcggct tcaccgctaa gcataggtaa acattcacct tctttccctt cgtcggcaaa
      481 aaactcaact tgccacatga tgtcgccgtc ctgcaaaacg tatttttggg cattgaactg
      541 ttgcacattc gcatcttcgg cgtcgatgcc ggggttgtct gcaagaaatt cttcgcgtgc
      601 agcgtcaatg gcttcttcaa gcgttgcgta catggtcatc acgattctcc ctttgagttg
      661 atgaggtttc agggaaaagg atagctgatt ctccgctttt gcaagtatga aaggcgaaaa
      721 atcagttcga tacctggggt attcgacgac gacgtagact gttccatgaa tagactgcgt
      781 tgaataacac tacgccagcg gtgacgagaa ataccgctct gaaaccgtag ttcgctgaaa
      841 tcgctgctcc catcaatggt ccggtaacgt tgccaatatc acgaaacgat tggttatagc
      901 tgaagatacg cccggcgatc tggttgctcg agttgtaaac caacaatgtc tgtacggcgg
      961 ggagtagtgc accatcggcg gcaccgagca aaaaacgtaa aatcccaagt tgcaatggcg
     1021 tctgaacgta agacattggg atcaacagca gtacagaaaa gatcagcgct gtaatcagaa
     1081 tcttttcggg tccgattcga tcgccaagtt tgccgagtcg tggtgcactt agcagagccg
     1141 ccacgcctgg caccgaggcg atcatgccac tgataaaggc gacgttactg acgttacccg
     1201 ccagttcgcg gacatacagc gtcagaatgg gggcaattga gcccgtcgcc acctggatga
     1261 ttaacgtagt gacaaacagg ctgagtacca gtttcgggtt tttaagtgat gtcaccactt
     1321 cccgcatgtg cagcatctct tttttgctga ccggctggaa tttttctctg atgcaaaaca
     1381 gggtgacgaa aaagcagagt atgagcacac tggcggtaat aaagaatacc ggacgtaagc
     1441 cgtagctatc ggcgagcagg ccgccagcca ttgggccgag caacgcacca ccaacgccgc
     1501 ctgtggagag cgtacccagc gcccagccgc ttttattacg cggtacttgt gtggcgataa
     1561 gagcattagc gttggggaca aatccgccaa gtaacccaag aagcgcccgc aggatcaaaa
     1621 actgccagat attttgtgcc agccccatca acaccatcac gatgcccatg ccgagggcag
     1681 agcgtaatag catgagtttt cggcctttac ggtcggcgag tccaccccaa aacggtgagg
     1741 cgatggccga aaataaaaat gtaatgctga agacaatacc ggaccatatt cagggcggag
     1801 tgaccggtaa cgccaagctg ctcaacgtag aggggtaaga agggcattac cagactgaag
     1861 gcggcaccgg taagaaaaca gcctagccag gcgacgatca ggtttcgttt ccagtttata
     1921 ggggtgtcat tttcacaggg tgacatagca atccgctgtt ggtgcgccag gcgcggtgaa
     1981 cataagaaga aaagataagc acactaatta tgcgcccgac tcccaggggc gcaatccaga
     2041 gagcttttat cgctaaatca gggggatttg ctgtggtaat gccggatgcc attctgaagc
     2101 atccggcagg ggagatttaa tagcgtgaag gaacgccttc cgggcgtgtt ttaaagcgac
     2161 ggtgtaacca catatactgc tctggtgcca tcatgatgca tttttcgacc actttgttca
     2221 tccacgcggc ggtagtttcg gcatcatcca gtggcggaga acactctggc ggcagcataa
     2281 tcaattgata ccctttgcca tctggcttac ggcgtggaac gaagggcacc agacatgcgc
     2341 cggacatccg tgccagcatc caggttccgg tcgtggtcgc agcctgctca acggcaaata
     2401 acgggacgaa aacgcttgag cgcgggccgt aatcatgatc cggtgcgtac cagaccactt
     2461 cgcctttttt cagggcttta atcatgcctt ttaaatcttt gcggtcgagc atcgatttat
     2521 ttgagcgcaa acggccccag gtttgtagcc agtcaatcag tggattatcg ttcgggcggt
     2581 aaacgccaat ccccggttcc tgcataccaa actgccgcgc acccagctcc agtgtcagaa
     2641 aatggatgcc aactaacagg atgccgcgtt tttgcgcctg cacgtcacga atgtgttcca
     2701 tgccgatcac ttccgtccag cgggcgattc ggcggtccgg ccagaaccac gccatgccgg
     2761 tttccatcag gcccatgcca acggattcga aattcttcac caccatttta cggcgttctt
     2821 gttcgctcat ttccgggaag cacagttcca ggttgcgatg cacaattttt gcgcgtcgtt
     2881 tcataaaacg taacgccagt tttcctaatc cacaaccgag gcggtagata accgggtagg
     2941 gcaattgcac gactaaccaa agtacgccaa tacccaacca ggttaaccaa taacgcggat
     3001 gaagcagtgc ggtggagaac ttgggtagat tcgtcatatc aatcctgttt ttcaacctat
     3061 tcgggcaatt gtatgtattg tcgcattttt tcgcccgcaa ccaaaatttg tggctgaaga
     3121 ctgggcgaaa ttgccgcgct tgtaaataac aaataatttt taatgcgcaa atgtagcgta
     3181 aaatgtgtgg atgttaatta tcgataattg ctatatcatg ccgcggattt ttactttccc
     3241 atctcgcagg aaccgtacac catgccagtg ttacacaacc gcatttccaa cgacgcgcta
     3301 aaagccaaaa tgttggctga gagcgaaccg cgaaccacca tttcgtttta caagtatttc
     3361 cacatcgccg atcctaaggc gacccgtgac gctttatatc agctgtttac cgcgctgaat
     3421 gtttttgggc gagtgtatct ggcgcatgag ggcattaacg cgcaaatcag cgtacctgcg
     3481 agcaatgttg aaacatttcg cgcgcagctc tatgccttcg acccggcttt agagggttta
     3541 cgcctgaata tcgcgttgga tgatgacggg aaatccttct gggtactgcg catgaaggta
     3601 cgtgatcgca ttgttgccga cggtattgac gatcctcact ttgatgccag caatgttggt
     3661 gagtatctgc aagcggcgga agtgaacgcc atgcttgacg atcccgatgc actatttatc
     3721 gaca
//
LOCUS       DADMHM010000272         3721 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.277, whole genome shotgun sequence.
ACCESSION   DADMHM010000272 DADMHM010000000
VERSION     DADMHM010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3721)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3721)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3721
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.277"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..392)
                     /locus_tag="JN125_003943"
     CDS             complement(<1..392)
                     /locus_tag="JN125_003943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HAY8873530.1"
                     /translation="MKKSTLALVVMGIVASASVQAAEIYNKDGNKLDVYGKVKAMHYM
                     SDNDSKDGDQSYIRFGFKGETQINDQLTGYGRWEAEFAGNKAESDTAQQKTRLAFAGL
                     KYKDLGSFDYGRKLGALYDVEAWTDMFP"
     gene            680..1783
                     /gene="proB"
                     /locus_tag="JN125_003944"
     CDS             680..1783
                     /gene="proB"
                     /locus_tag="JN125_003944"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HAY8873531.1"
                     /translation="MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHR
                     IVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQML
                     LTRADMEDRERFLNARDTLRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILA
                     GADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKL
                     QAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATPLENRKRWIFGAPPAG
                     EITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDA
                     LRRIAGHHSQEIDAILGYEYGPVAVHRDDMITR"
     gene            1795..3048
                     /gene="proA"
                     /locus_tag="JN125_003945"
     CDS             1795..3048
                     /gene="proA"
                     /locus_tag="JN125_003945"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HAY8873532.1"
                     /translation="MLEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILN
                     ANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSG
                     LRLERRRVPLGVIGVIYEARPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQ
                     DALKSCGLPAGAVQAIDNPDRALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVI
                     TGGIGVCHIYVDESVEIAEALKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQ
                     MAESGVTLHADAAALAQLQAGPAKVVAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIR
                     EHGTQHSDAILTCDMRNAQRFVNEVDSSAVYVNASTRFTDGGQFGLGAEVAVSTQKLH
                     ARGPMGLEALTTYKWIGIGDYTIRA"
     gene            3163..3238
                     /locus_tag="JN125_003946"
     tRNA            3163..3238
                     /locus_tag="JN125_003946"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3196..3198,aa:Thr,seq:cgt)
     gene            complement(3253..>3721)
                     /locus_tag="JN125_003947"
     CDS             complement(3253..>3721)
                     /locus_tag="JN125_003947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HAY8873533.1"
                     /translation="VAWINPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKES
                     CTKPDGTKAPTVRKMRYDANTAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVL
                     QEMGGWESIEMVRRYAHLAPNHLTEHARQIDSILNPSVPNLSQSRNKERTNDV"
BASE COUNT          897 a          939 c          968 g          917 t
ORIGIN      
        1 tccgggaaca tatcggtcca ggcttccacg tcatacaacg cgcccagctt acgaccataa
       61 tcgaaagaac ccaaatcttt atatttcaac ccggcaaaag cgagacgcgt tttttgctgt
      121 gcagtatcac tctctgcttt attaccggca aactctgctt cccaacgacc ataaccagtc
      181 agttgatcgt taatttgtgt ttcgccttta aaaccaaaac ggatataact ctggtcgcca
      241 tctttactgt cgttatcact catataatgc atggctttaa ctttgccata gacatccagt
      301 ttattaccgt ctttgttata tatttctgcg gcctgtacgg atgcagatgc cacaatgccc
      361 atcaccacta atgccagagt gctctttttc attttcattc ctgattttaa ttaacgcgcg
      421 aatattcagc gggagagccc cgttgaaaac aggaaagttt ttaacctgag attgttaaag
      481 atatattaca gattaataat attcttaaaa tgtggtaatt tattaaatct gtaataaaag
      541 cgtaaacaac tgccgctagg cttgctgatc ccgcgcaaca aaacgccatg ctttgctcgc
      601 agatggttgg caaccgacga cagtcctgct aaaacgttcg tttgatatca tttttcctaa
      661 aattgaatgg cagagaatca tgagtgacag ccagacgctg gtggtaaaac tcggcaccag
      721 tgtgctaaca ggcggatcgc gccgtctgaa ccgtgcccat atcgttgaac ttgttcgcca
      781 gtgcgcgcag ttacatgccg ccgggcatcg gattgttatt gtgacgtcgg gcgcgatcgc
      841 cgccggacgt gagcacctgg gttacccgga actgccagcg actatcgcct cgaaacaact
      901 gctggcagcg gtagggcaga gtcgactgat tcaactgtgg gaacagctgt tttcgattta
      961 tggcattcac gtcgggcaaa tgctgctgac ccgtgctgat atggaagacc gtgaacgctt
     1021 cctgaacgcc cgcgacaccc tgcgtgcgtt gctcgataac aatatcgttc cggtaatcaa
     1081 tgagaacgat gctgtcgcta cggcagagat taaagtcggc gataacgata acctttctgc
     1141 gctggcggcg attctggcgg gtgccgataa actgttgctg ctgaccgatc aaaaaggttt
     1201 gtataccgct gacccgcgca gcaatccgca ggcagaactg attaaagatg tttacggcat
     1261 tgatgacgca ctgcgcgcga ttgccggtga cagcgtttca ggcctcggaa ctggcggcat
     1321 gagtaccaaa ttgcaggccg ctgacgtggc ttgccgtgcg ggtatcgaca ccattattgc
     1381 cgcgggcagc aagccgggcg ttattggtga tgtgatggaa ggcatttccg tcggtacgct
     1441 gttccatgcc caggcgactc cgcttgaaaa ccgtaaacgc tggattttcg gtgcgccgcc
     1501 ggcgggtgaa atcacggtag atgaaggggc aactgccgcc attctggaac gcggcagctc
     1561 cctgttgccg aaaggcatta aaagcgtgac tggcaatttc tcgcgtggtg aagtcatccg
     1621 catttgcaac ctcgaaggtc gcgatatcgc ccacggtgtc agtcgttaca acagcgatgc
     1681 attacgccgt attgccggac accactcgca agaaattgat gcaatactgg gatatgaata
     1741 cggcccggtt gccgttcacc gtgatgacat gattacccgt taaggagctg gccgatgctg
     1801 gaacaaatgg gcattgccgc gaagcaagcc tcgtataaat tagcgcaact ctccagccgc
     1861 gaaaaaaatc gcgtgctgga aaaaatcgcc gatgaactgg aagcacaaag cgaaatcatc
     1921 ctcaacgcta acgcccagga tgttgctgac gcgcgagcca atggccttag cgaagcgatg
     1981 cttgaccgtc tggcactgac gcccgcacgg ctgaaaggca ttgccgacga tgtacgtcag
     2041 gtgtgcaacc tcgccgatcc ggtggggcag gtaatcgatg gcggcgtact ggacagcggc
     2101 ctgcgtcttg agcgtcgtcg cgtaccgctg ggggttattg gcgtgattta tgaagcgcgc
     2161 ccgaacgtga cggttgatgt cgcttcgctg tgcctgaaaa ccggtaatgc ggtgatcctg
     2221 cgcggtggca aagaaacgtg tcgcactaac gctgcaacgg tggcggtgat tcaggacgcc
     2281 ctgaaatcct gcggcttacc ggcgggtgcc gtgcaggcga ttgataatcc tgaccgtgcg
     2341 ctggtcagtg aaatgctgcg tatggataaa tacatcgaca tgctgatccc gcgtggtggc
     2401 gctggtttgc ataaactgtg ccgtgaacag tcgacaatcc cggtgatcac aggtggtata
     2461 ggcgtatgcc atatttacgt tgatgaaagt gtagagatcg ctgaagcatt aaaagtgatc
     2521 gtcaacgcga aaactcagcg tccgagcaca tgtaatacgg ttgaaacgtt gctggtgaat
     2581 aaaaacatcg ccgatagctt cctgcccgca ttaagcaaac aaatggcgga aagcggcgtg
     2641 acattacacg cagatgcagc tgcactggcg cagttgcagg caggccctgc gaaggtggtt
     2701 gctgttaaag ccgaagagta tgacgatgag tttctgtcat tagatttgaa cgtcaaaatc
     2761 gtcagcgatc ttgacgatgc catcgcccat attcgtgaac acggcacaca acactccgat
     2821 gcgatcctga cctgcgatat gcgcaacgcc cagcgttttg ttaacgaagt ggattcgtcc
     2881 gctgtttacg ttaacgcctc tacgcgtttt actgacggcg gccagtttgg tctgggtgcg
     2941 gaagtggcgg taagcacaca aaaactccac gcgcgtggcc caatggggct ggaagcactg
     3001 accacttaca agtggatcgg cattggtgat tacaccattc gtgcgtaaat aaaaccgggt
     3061 gatgcaaaag tagccatttg attcacaagg ccattgacgc atcgcccggt tagttttaac
     3121 cttgtccacc gtgattcacg ttcgtgaaca tgtcctttca gggccgatat agctcagttg
     3181 gtagagcagc gcattcgtaa tgcgaaggtc gtaggttcga ctcctattat cggcaccatt
     3241 taaatcaata agttacacat cattagtacg ttccttattt cttgactggg acaaatttgg
     3301 gaccgatggg ttcagaatcg agtctatttg ccgtgcgtgt tcggtaaggt gattaggtgc
     3361 gaggtgagca tatcgacgaa ccatttcgat agactcccag cctcccattt cctgtaacac
     3421 tgataacggg actccggcct gaaccagcca acttgcccag gtgtgtctca agtcgtgaaa
     3481 tctgaaatca tcaatacctg ctcgtctcag cgccgctttc caggctgtgt ttgcgtcata
     3541 ccgcatcttc ctgactgttg gcgctttcgt tccgtctggt ttggtacagc tttccttata
     3601 cacaaatacc caacggtgat gattcccgat ttgttttttc aatacgcgac atgcagtatc
     3661 attcagcgca acgccaattg cgcggtttga tttactctct tccgggttta tccatgccac
     3721 c
//
LOCUS       DADMHM010000273         3678 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.278, whole genome shotgun sequence.
ACCESSION   DADMHM010000273 DADMHM010000000
VERSION     DADMHM010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3678)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3678)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3678
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.278"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(120..2189)
                     /gene="glyS"
                     /locus_tag="JN125_003948"
     CDS             complement(120..2189)
                     /gene="glyS"
                     /locus_tag="JN125_003948"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001291772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HAY8873534.1"
                     /translation="MSEKTFLVEIGTEELPPKALRSLAESFAANFTVELDNAGLAHGT
                     VQWFAAPRRLTLKVANLAEAQPDREIEKRGPAIAQAFDAEGKPSKAAEGWARGCGITV
                     DQAERLTTDKGEWLLYRAHVKGESTEALLPNMVATSLAKLPIPKLMRWGASDVHFVRP
                     VHTVTLLLGDKVIPATILGIQSDRVIRGHRFMGEPEFTIDNADQYPEILRERGKVIAD
                     YEERKAKIKADAEEAARKIGGNADLSESLLEEVASLVEWPVVLTAKFEEKFLAVPAEA
                     LVYTMKGDQKYFPVYANDGKLLPNFIFVANIESKDPQQIISGNEKVVRPRLADAEFFF
                     NTDRKKRLEDNLPRLQTVLFQQQLGTLRDKTDRIQALAGWIAEQIGADVNHATRAGLL
                     SKCDLMTNMVFEFTDTQGVMGMHYARHDGEAEDVAVALNEQYQPRFAGDDLPSNPVAC
                     ALAIADKMDTLAGIFGIGQHPKGDKDPFALRRAALGVLRIIVEKNLNLDLQTLTEEAV
                     RLYGDKLTNANVVDDVIDFMLGRFRAWYQDEGYTVDTIQAVLARRPTRPADFDARMKA
                     VSHFRTLDAAAALAAANKRVSNILAKSDEVLSDRVNASTLKEPEEIKLAMQVVVLRDK
                     LEPYFAEGRYQDALVELAELREPVDAFFDKVMVMVDDKELRLNRLTMLEKLRELFLRV
                     ADISLLQ"
     gene            complement(2199..3110)
                     /gene="glyQ"
                     /locus_tag="JN125_003949"
     CDS             complement(2199..3110)
                     /gene="glyQ"
                     /locus_tag="JN125_003949"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HAY8873535.1"
                     /translation="MQKFDTRTFQGLILTLQDYWARQGCTIVQPLDMEVGAGTSHPMT
                     CLRALGPEPMAAAYVQPSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLGSL
                     KELGMDPTIHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVT
                     GEITYGLERLAMYIQGVDSVYDLVWSDGPLGKTTYGDVFHQNEVEQSTYNFEYADVDF
                     LFTCFEQYEKEAQQLLALENPLPLPAYERILKAAHSFNLLDARKAISVTERQRYILRI
                     RTLTKAVAEAYYASREALGFPMCNKDK"
     gene            complement(3205..3504)
                     /locus_tag="JN125_003950"
     CDS             complement(3205..3504)
                     /locus_tag="JN125_003950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873536.1"
                     /translation="MMMNAFFPAMALMVLVGCSTPSPVQKAQRVKVDPLRSLNMEALC
                     KDQAAKRYNTGEQKIDVTAFEQFQGSYEMRGYTFRKEQFVCSFDADGHFLHLSMR"
BASE COUNT          848 a         1000 c          948 g          882 t
ORIGIN      
        1 ctcataaaat taatatatga gataatcttt attcagcaga agattattaa aggttgctgt
       61 attatttagc gataataaaa aaagcctgcc agatggcagg ctttttaata acggcgttat
      121 tactgcaaca gcgaaatatc cgcaacgcgc aggaacagtt cgcgcagttt ctccagcatg
      181 gtcagacggt tgagacgcaa ttctttgtca tcaaccatga ccatcacttt atcgaagaaa
      241 gcatcaaccg gctcacgcag ctctgccagt tcgaccagcg catcctggta acgaccttcc
      301 gcaaagtacg gctccagctt gtcacgtagc accacaacct gcatcgccag tttaatttct
      361 tccggctctt tcagggtaga ggcattcacg cggtcgctca gcacttcgtc agatttcgcc
      421 agaatgttag atacacgttt gttcgccgcc gccagtgcag cagctgcatc cagggtacgg
      481 aaatgcgata ccgctttcat acgggcatcg aaatcagccg gacgagtcgg acgacgcgcc
      541 agtaccgcct ggatggtgtc aacggtgtaa ccttcgtcct gataccaggc gcggaagcga
      601 ccgagcataa agtcgataac atcatcaacc acgttggcgt tagtcagctt atcgccatac
      661 agacgcactg cttcttcggt cagcgtttgc agatcaaggt tgaggttctt ctcaacgata
      721 attcgcagca cgccaagtgc ggcacgacgc agcgcaaacg ggtctttgtc gcctttcgga
      781 tgctgaccga taccgaagat acccgccaga gtatccatct tatcagcaat cgccagcgca
      841 caagctaccg ggttggacgg caggtcatca ccggcaaagc gcggctgata ctgctcattc
      901 agcgcgacgg ctacgtcttc cgcttcgcca tcgtgacgcg cgtagtgcat ccccataacg
      961 ccttgggtgt cggtgaactc gaagaccatg ttggtcatca ggtcacactt agacagcagg
     1021 cccgcacggg ttgcgtggtt aacgtcagcg ccaatctgtt cagcaatcca gccagccagc
     1081 gcctggatgc ggtcagtttt gtcacgcagc gtacccagct gttgctggaa cagcacggtt
     1141 tgcaggcgcg gcaggttatc ttccagacgt tttttacggt cggtattgaa gaagaactcg
     1201 gcatccgcca gacgtggacg aacgactttc tcgttaccag agataatttg ctgcggatct
     1261 ttcgattcga tgttggcaac gaagatgaag ttcggcagca gtttgccatc gttcgcatac
     1321 accgggaagt atttctggtc acctttcatg gtgtaaacca gggcttcagc cggcaccgcg
     1381 aggaatttct cttcgaattt tgcggtcaga acgaccggcc actccaccag cgaagccact
     1441 tcttccagca ggctttcgct taagtcagcg ttaccgccaa tcttacgcgc tgcttcttcg
     1501 gcatcggctt taatcttcgc tttacgttct tcgtaatcgg cgatgacttt cccgcgctca
     1561 cgcagaattt ccggatactg atcggcgttg tcgatggtga attccggttc gcccataaag
     1621 cggtggccgc gaatcacgcg atcggactga atgcccagaa tagttgccgg aatgactttg
     1681 tcgcccagca gcagggtcac ggtgtgcacc ggacgcacga agtgcacgtc gcttgcgccc
     1741 caacgcatca gtttcgggat cggcagtttc gccagagaag tcgcaaccat attcggcagc
     1801 agtgcttcgg tgctttcgcc cttcacatgg gcgcgataca gcagccattc gcctttatcg
     1861 gtagtcagac gctcagcctg gtcaacggta ataccgcaac cacgcgccca accttctgcc
     1921 gctttgctcg gtttgccttc agcgtcgaac gcctgggcaa tcgccgggcc gcgtttttcg
     1981 atttcacgat ccggttgcgc ttccgccagg ttagctactt tcagcgtcag acgacgcgga
     2041 gcagcaaacc attgaacggt gccgtgtgcg aggccagcgt tatccagctc cacagtaaaa
     2101 ttcgcagcaa aggactcagc caggctgcgc agtgcttttg gtggcagctc ttcagtgccg
     2161 atttccacca gaaaagtttt ctcagacata gccgcctctt acttatcttt gttgcacatc
     2221 gggaagccga gggcttcacg ggaagcgtag tatgcttctg ccactgcttt ggtcagggtg
     2281 cgaatgcgca gaatgtagcg ctgacgctcg gtgacggaga tggctttacg cgcatccagc
     2341 aggttgaagc tgtgggcggc tttcagaata cgctcgtagg ctggcagcgg cagcggattt
     2401 tccagcgcca gcagctgctg cgcttctttc tcgtactgct caaagcaggt gaacaggaag
     2461 tccacatccg cgtattcgaa gttgtaagtg gactgctcca cttcgttctg atggaacacg
     2521 tcgccgtagg tggttttacc cagcgggccg tcgctccaga ccaggtcgta aacgctgtct
     2581 acgccctgaa tgtacatggc cagacgttcc agaccgtagg tgatctcgcc ggtaaccggt
     2641 ttacactcca gaccaccaac ctgctggaag taagtgaact gcgtcacttc catgccgttt
     2701 agccacactt cccagcccag tccccaggca cccagagtcg ggttttccca gttatcttcc
     2761 acgaaacgga tgtcgtgaat agtcgggtcc atgcccagct ctttcagaga accgaggtac
     2821 agctcctgaa tattgtccgg cgatggctta atgaccacct ggaactgata gtagtgctgt
     2881 aaacggttgg ggttttcgcc gtagcgacca tcggtcgggc gacgagaagg ctgaacataa
     2941 gcagccgcca tcggttctgg ccccagcgcg cgcagacagg tcattgggtg agaggttccc
     3001 gcgccgactt ccatgtccaa tggttgaaca atggtgcagc cctggcgagc ccagtaatcc
     3061 tgtaaggtca ggatcaagcc ctggaaggtc ctggtatcaa acttttgcat attatttcgt
     3121 gctggatacg tgtggattta aaggaaggga tcagtatacc cgctggatgg aagatataca
     3181 gtacgaaacg ggaaaaagca gggcttaacg catggaaaga tgcaaaaaat ggccatctgc
     3241 gtcaaaagaa cagacaaact gctctttacg gaaggtataa ccgcgcattt catagcttcc
     3301 ctggaactgt tcgaaggcgg tgacgtcgat tttttgctcg ccggtgttat aacgttttgc
     3361 cgcctgatcc ttgcataacg cttccatatt caacgaacgc agaggatcaa cctttacccg
     3421 ttgtgctttc tgcacgggtg acggtgtaga acaacccact agcaccataa gcgccattgc
     3481 cggaaagaaa gcgttcatca tcattaaatt accgtctggt ttgcaggtga gtcttattat
     3541 ttatatcggt atagtggctg atatcttacg aatttcctta agcctctata agctgtagtg
     3601 ataaaactca gattattcca gtgcgccaac caaatgattt atcggtcaga ctttttttaa
     3661 ccagatacag agacacag
//
LOCUS       DADMHM010000274         3676 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.279, whole genome shotgun sequence.
ACCESSION   DADMHM010000274 DADMHM010000000
VERSION     DADMHM010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3676)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3676)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3676
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.279"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..267)
                     /locus_tag="JN125_003951"
     CDS             complement(<1..267)
                     /locus_tag="JN125_003951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415967.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HAY8873537.1"
                     /translation="MPGMGKMKHVSLTLQVENDLKHQLSIGALKPGARLITKNLAEQL
                     GMSITPVREALLRLVSVNALSVAPAQAFTVPEVGKRQLDEINRIR"
     gene            complement(465..1502)
                     /gene="curA"
                     /locus_tag="JN125_003952"
     CDS             complement(465..1502)
                     /gene="curA"
                     /locus_tag="JN125_003952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415966.6"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent curcumin/dihydrocurcumin
                     reductase"
                     /protein_id="HAY8873538.1"
                     /translation="MGQQKQRNRRWVLASRPHGAPVPENFRLEEDDVATPGEGQVLLR
                     TVYLSLDPYMRGRMSDEPSYSPPVDIGGVMVGGTVSHVVESNHPDYQPGDWVLGYSGW
                     QDYDISSGDDLVKLGDHPQNPSWSLGVLGMPGFTAYMGLLDIGQPKEGETLVVAAATG
                     PVGATVGQIGKLKGCRVVGGAGGAEKCRHAIEVLGFDVCLDHHAGDFAEQLVKACPKG
                     IDIYYENVGGKVFDAVLPLLNTSARIPVCGLVSSYNATELPPGPDRLPLLMATVLKKR
                     IRLQGFIIAQDYGHRIHEFQKEMGQWVKEDKIHYHEDITDGLENAPQTFIGLLKGKNF
                     GKVVIRVAGDD"
     gene            1683..2201
                     /gene="mddA"
                     /locus_tag="JN125_003953"
     CDS             1683..2201
                     /gene="mddA"
                     /locus_tag="JN125_003953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-methionine sulfoximine/L-methionine sulfone
                     acetyltransferase"
                     /protein_id="HAY8873539.1"
                     /translation="MSIRFARKADCAAIAEIYNHAVLYTAAIWNDQTVDADNRIAWFE
                     ARTIAGYPVLVSEEDGVVTGYASFGDWRSFDGFRHTVEHSVYVHPDHQGKGLGRKLLS
                     RLIDEARDSGKHVMVAGIESQNQASLHLHHSLGFVVTAQMPQVGTKFGRWLDLTFMQL
                     QLDERTEPDAIG"
     gene            2198..2647
                     /locus_tag="JN125_003954"
     CDS             2198..2647
                     /locus_tag="JN125_003954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HAY8873540.1"
                     /translation="MNQSLTLAFLIAAGIGLVVQNTLMVRITQTSSTILIAMLLNSLV
                     GIVLFVSILWFKQGMAGFGELVSSVRWWTLIPGLLGSFFVFASISGYQNVGAATTIAV
                     LVASQLIGGLMLDIFRSHGVPLRALFSPICGAILLVVGAWLVARRSF"
     gene            complement(2648..2881)
                     /locus_tag="JN125_003955"
     CDS             complement(2648..2881)
                     /locus_tag="JN125_003955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcY family protein"
                     /protein_id="HAY8873541.1"
                     /translation="MSHLDEVIARVDAAIEESVIAHMNELLIALSDDAELSREDRYTQ
                     QQRLRTAIAHHGRKHKEDMEARHEQLTKGGTIL"
     gene            complement(2967..3101)
                     /locus_tag="JN125_003956"
     CDS             complement(2967..3101)
                     /locus_tag="JN125_003956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GhoT/OrtT family toxin"
                     /protein_id="HAY8873542.1"
                     /translation="MAAIAFLITWFLSHDKKRIRFLSAFLVGATWPMSFPVALLFSLF
                     "
     gene            3336..3431
                     /gene="yncL"
                     /locus_tag="JN125_003957"
     CDS             3336..3431
                     /gene="yncL"
                     /locus_tag="JN125_003957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001165318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response membrane protein YncL"
                     /protein_id="HAY8873543.1"
                     /translation="MNVSSRTVVLINVFAAVGLFTLISMRFGWFI"
BASE COUNT          901 a          931 c          841 g         1003 t
ORIGIN      
        1 gcggatccga ttgatttcgt ctaattgacg tttccccact tccggaactg taaatgcttg
       61 tgcaggtgcg acagaaagcg cattcaccga aaccagacgt aataatgctt cacgcacagg
      121 tgtaatactc atacctaatt gctccgccag atttttagta atcaggcgtg cgccaggttt
      181 taatgcgcca atactaagct gatgtttcag gtcgttctca acctgcagag tcaaactgac
      241 atgtttcatt tttcccattc caggcatttt aattccttcg cgtgttttct gtccaaccct
      301 gcctgcacgg cagaaggagt tcacctggtg tattaaagtg aataatcata aaccacccac
      361 ctttgttgtt attagcagca gaacaatgac gtggttagtt aattaaagct gaaaataagc
      421 tttttgcctg gatttttatg gcggcttacg ccgccgttga aactttaatc atcacccgcg
      481 acgcggatca ccactttgcc gaagttttta cccttcagca ggccgataaa cgtctgtggc
      541 gcattctcta aaccatcagt aatatcttcg tggtagtgga ttttatcctc tttcacccat
      601 tgccccatct ccttctgaaa ctcatggatg cggtgaccat aatcctgagc gataataaac
      661 ccttgcaagc gaatacgttt tttcagcacc gttgccatca acaggggtaa acgatccgga
      721 ccgggtggta gctctgtagc gttatagctg ctcactaagc cacaaacggg aatgcgcgca
      781 gatgtattaa gtaatggtag cactgcatca aataccttac cgcccacgtt ttcataatag
      841 atatcaatac cttttgggca cgctttcacc agttgttcgg caaaatcacc cgcgtggtga
      901 tcaagacaaa catcgaagcc cagcacctcg atagcatggc ggcatttttc cgcaccaccg
      961 gcacccccca ccaccctgca acctttaagt ttgccgattt gccccaccgt tgctcccaca
     1021 ggacctgtcg ccgcagctac caccaacgtt tcgccctctt taggctgacc gatatccagc
     1081 agccccatat aagcggtaaa gcctggcatc cccagcacac ccagcgacca cgatggattt
     1141 tgcggatgat cgccaagttt caccagatca tcaccactgg atatgtcata gtcctgccat
     1201 ccactgtagc ccagcaccca gtcgccaggc tgataatcag gatgattcga ctccacaaca
     1261 tggctcaccg tgccgccgac catcacgccg ccaatatcaa caggcggtga ataagatggc
     1321 tcatcgctca tacgtccacg catatacggg tccagggaca aataaactgt gcgcagtaac
     1381 acctgtcctt cacccggtgt ggcgacatca tcttcttcaa gacggaaatt ctccggaacc
     1441 ggtgcgccat gtggacgcga ggccagaacc caacgtcgat tacgctgctt ttgttgcccc
     1501 ataatgctct cctgtgcttt tggcatgaat ccatcaatag tagcaggctc acgggattgg
     1561 ttttgtttgc agccgtcaca tcccctctgc aacacgcaat aatttcatcg aggaatccgt
     1621 tgcttcgggc tgttttcgat agtattgata acatcatcat cattatttta tcgaggccag
     1681 acatgtccat ccgttttgcc cgcaaagccg attgtgctgc cattgcggaa atttataacc
     1741 acgccgtgtt gtatacggcg gctatctgga atgaccaaac ggttgatgca gataaccgca
     1801 ttgcctggtt tgaagcgcgg accatagcag gttatccggt gctggtaagt gaagaagatg
     1861 gcgtagtgac gggatatgcc tcgtttggcg actggcgtag tttcgatggt tttcgccata
     1921 ccgtggaaca ttcggtttat gtccatcccg atcatcaggg caaaggtctg gggcgtaaat
     1981 tgttaagccg attgattgat gaagcgcggg atagcgggaa gcatgtcatg gtcgccggga
     2041 tcgaatcgca aaatcaggcc tcgctgcatc tgcaccattc gctgggattt gtcgtcaccg
     2101 cacaaatgcc gcaggtgggc actaaatttg ggcgctggct ggatctgaca tttatgcagt
     2161 tgcaactcga cgaacgcact gaaccggacg cgattggatg aatcagtcgc tcacccttgc
     2221 ttttttgatt gccgccggaa ttggtctggt agtccagaac acgctgatgg tgcgcatcac
     2281 ccagacctcc tctaccattc tcatcgccat gttgctgaac tcactggtgg ggattgtgct
     2341 ctttgtttct attttatggt ttaaacaagg catggcgggg tttggcgaac tggtgtccag
     2401 cgtgcgctgg tggacactta tacccggctt gctgggatcg ttttttgtct tcgccagtat
     2461 cagcggatat cagaatgtgg gagcggcgac aactattgca gtactggtcg ccagccagct
     2521 aattggcggt ctgatgctgg atatcttccg cagtcatggc gtaccactac gggcgttgtt
     2581 cagcccaatt tgtggcgcaa ttttacttgt ggttggcgcc tggttggtag ccagacgctc
     2641 attttaatca gaggatggtg ccgcctttgg ttaactgttc gtggcgcgct tccatatctt
     2701 ctttatgctt gcgaccgtga tgagcaatag cggtgcgcaa acgctgctgc tgggtgtagc
     2761 gatcttcccg acttaactcc gcgtcatcgc tcagggcgat taataattcg ttcatatggg
     2821 caatgacgct ctcttcaatc gcggcatcca cgcgcgcgat gacttcatcc agatgcgaca
     2881 tactttctcc ttaaccactt gtgaaattta tcgattcatc caaatgatat aagtctgcgt
     2941 ggtgccgtca agccagtgag taagatttaa aacagtgaaa acaacagcgc caccgggaaa
     3001 ctcatcggcc atgttgcccc caccagaaag gcgcttaaga aacggatgcg tttcttatcg
     3061 tgagaaagaa accaggtgat aagaaatgcg attgctgcca taaccgcata aaaaaacaag
     3121 catatgttga tagagagaca tgtacgggcg tccagccaga tgaataaaac gcgcgcaaat
     3181 atgcgtcatt ttttgacgtg catcaagttt tttcaccagt ttgagaaaaa atcatcaaac
     3241 agcaacttgc ccttatccat cttcagaatg agtattattg cggattttct taatccgtac
     3301 tatacacata ggggcaatga taaaaggtgg caaaaatgaa tgtttccagt agaactgtag
     3361 tactgataaa tgtctttgct gctgttggtt tgtttactct tatctctatg agatttggct
     3421 ggtttatttg atgtagtgat tttgcacgca gcacgtactg tcagagaaat caactctctg
     3481 acagtacgca agatcttctc atactctcca ggtttacaac attatcctta atatttactt
     3541 ctttttgctg gcatctacat tgaaatgagt agaaaacatc cccctactgt cgtctataca
     3601 aacagcttac tgattcaaac ggaatcttgt tttcacattt ttctatcatg aatactttat
     3661 acgcgcggga gtctat
//
LOCUS       DADMHM010000275         3653 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.280, whole genome shotgun sequence.
ACCESSION   DADMHM010000275 DADMHM010000000
VERSION     DADMHM010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3653)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3653)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3653
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.280"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(4..79)
                     /locus_tag="JN125_003958"
     tRNA            complement(4..79)
                     /locus_tag="JN125_003958"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(44..46),aa:Val,seq:tac)
     gene            complement(126..201)
                     /locus_tag="JN125_003959"
     tRNA            complement(126..201)
                     /locus_tag="JN125_003959"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(166..168),aa:Val,seq:tac)
     gene            complement(246..321)
                     /locus_tag="JN125_003960"
     tRNA            complement(246..321)
                     /locus_tag="JN125_003960"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(286..288),aa:Val,seq:tac)
     gene            581..1996
                     /gene="gltX"
                     /locus_tag="JN125_003961"
     CDS             581..1996
                     /gene="gltX"
                     /locus_tag="JN125_003961"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HAY8873544.1"
                     /translation="MKIKTRFAPSPTGYLHVGGARTALYSWLFARNHGGEFVLRIEDT
                     DLERSTPEAIEAIMDGMNWLSLEWDEGPYYQTKRFDRYNAVIDQMLEEGTAYKCYCSK
                     ERLEALREEQMAKGEKPRYDGRCRHSHEHHADDEPCVVRFANPQEGSVVFDDQIRGPI
                     EFSNQELDDLIIRRTDGSPTYNFCVVVDDWDMEITHVIRGEDHINNTPRQINILKALK
                     APVPVYAHVSMINGDDGKKLSKRHGAVSVMQYRDDGYLPEALLNYLVRLGWSHGDQEI
                     FTREEMIKYFTLNAVSKSASAFNTDKLLWLNHHYINALPPEYVATHLQWHIEQENIDT
                     RNGPQLADLVKLLGERCKTLKEMAQSCRYFYEDFAEFDADAAKKHLRPVARQPLEVVR
                     DKLAAITDWTAENVHHAIQATADELEVGMGKVGMPLRVAVTGAGQSPALDVTVHAIGR
                     TRSIERINKALAFIAERENQQ"
     gene            complement(2047..2418)
                     /locus_tag="JN125_003962"
     CDS             complement(2047..2418)
                     /locus_tag="JN125_003962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding transcriptional regulator"
                     /protein_id="HAY8873545.1"
                     /translation="MTTEELAECLGVAKQTVNRWIREKGWKTEKFPGVKGGRARLILV
                     DTQVCEFIQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVA
                     QFLSREGIRNFLARLDIDESA"
     gene            complement(2441..2785)
                     /locus_tag="JN125_003963"
     CDS             complement(2441..2785)
                     /locus_tag="JN125_003963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708260.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding transcriptional regulator"
                     /protein_id="HAY8873546.1"
                     /translation="MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHV
                     NEQVREYIRNAERPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGII
                     GLLQGLGIRDSK"
     gene            3021..3096
                     /locus_tag="JN125_003964"
     tRNA            3021..3096
                     /locus_tag="JN125_003964"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3054..3056,aa:Ala,seq:ggc)
     gene            3136..3211
                     /locus_tag="JN125_003965"
     tRNA            3136..3211
                     /locus_tag="JN125_003965"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3169..3171,aa:Ala,seq:ggc)
     gene            3420..>3653
                     /locus_tag="JN125_003966"
     CDS             3420..>3653
                     /locus_tag="JN125_003966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873547.1"
                     /translation="MFVEHNLIKNIKIFTLAFTLTVVLIQLSRFISPLAIIHSSYIFL
                     AWMPLCVMLSILFIFGWRGVVPVLCGMFCTNLWN"
BASE COUNT          873 a          903 c          916 g          961 t
ORIGIN      
        1 aagtggtggg tgatgacggg atcgaaccgc cgaccccctc cttgtaaggg aggtgctctc
       61 ccagctgagc taatcaccca cttcggtact tcacattgtt acaagaaatt tagctggtga
      121 gaaagtggtg ggtgatgacg ggatcgaacc gccgaccccc tccttgtaag ggaggtgctc
      181 tcccagctga gctaatcacc cacttctcaa tttcttgcta cacggcggag actacataaa
      241 gtagttggtg ggtgatgacg ggatcgaacc gccgaccccc tccttgtaag ggaggtgctc
      301 tcccagctga gctaatcacc ccccgctgtg tggagtcgca ttatagggag agttcaaaat
      361 gagtcaacgc attttctaaa gaaattgttc gttcgtcgta aatttaagca agatgatcgc
      421 aaaacagacc gtgttgcgca atttgtcaac gaaaacaata atgcgtaagg tagaaatccg
      481 aactacattg aggaatcagg cgggagtgat agaatatcgc ccactcaatt tttccaggat
      541 ttgccggttg tcggcatctt tctaaacgta aggccatttc atgaaaatca aaactcgctt
      601 cgcgccaagc ccaacaggct atctgcacgt tggcggcgcg cgtactgctc tttactcctg
      661 gctttttgca cgtaaccacg gcggtgagtt cgtgctgcgt attgaagaca ccgatcttga
      721 gcgttccacg ccggaagcta tcgaagccat tatggatggc atgaactggc tgagcctgga
      781 gtgggatgaa ggtccgtact accagaccaa acgttttgat cgctacaacg cggtgatcga
      841 tcagatgctg gaagagggca ctgcttataa atgctattgc tctaaagagc gcctggaagc
      901 gctgcgcgaa gagcaaatgg cgaaaggtga gaagccgcgt tatgacggtc gctgccgcca
      961 cagccatgag catcacgctg atgatgaacc gtgcgttgta cgttttgcta acccgcagga
     1021 aggttctgtt gtttttgacg atcagatccg tggtccgatc gagttcagca accaggaact
     1081 ggacgatctt attatccgcc gtaccgatgg ttccccaacc tataacttct gtgtggttgt
     1141 cgatgactgg gatatggaaa tcacccacgt tatccgtggc gaagaccata tcaacaacac
     1201 gccacgccag atcaacattc ttaaggccct gaaagcgccg gtgccggttt acgcgcacgt
     1261 ttctatgatc aacggcgatg acggtaaaaa actgtccaaa cgtcacgggg cggtcagcgt
     1321 aatgcagtat cgtgatgacg gttatttgcc agaagcactg ctgaactatc tggtgcgtct
     1381 gggctggtcc cacggcgatc aggaaatctt cactcgtgaa gagatgatca aatacttcac
     1441 cctgaatgcc gtcagcaaat ctgccagtgc gttcaacacc gacaagctgc tgtggctgaa
     1501 ccatcactac attaacgcgc tgccgccgga gtatgttgct actcacttac agtggcacat
     1561 tgagcaggaa aatatcgata cccgtaacgg cccgcagctg gctgatctgg tgaaactgct
     1621 gggcgaacgc tgcaagacgc tgaaagagat ggcacagagc tgccgttatt tctacgaaga
     1681 ttttgctgag ttcgatgccg acgccgcgaa aaaacatctg cgtccggtag cgcgtcagcc
     1741 gctggaagtg gttcgtgaca aactggccgc gattactgac tggaccgctg aaaacgttca
     1801 tcacgctatt caggcgacgg cggatgagct ggaagtgggt atgggtaaag ttggtatgcc
     1861 gctgcgtgtc gccgtaaccg gtgcggggca gtctccggca ctggatgtta ccgttcacgc
     1921 aattggtagg acccgcagta tcgagcgtat caacaaagcg ctggctttta ttgctgaacg
     1981 cgaaaaccag cagtaattag cgcataaaag ataaacggca ggagataata tcctgccgtt
     2041 ttttatttat gctgattcgt caatatcgag acgggcgagg aaattgcgaa ttccttcacg
     2101 tgacaaaaat tgcgcgactt tttcctgctc aatgtctgtc atattatcta tcgcgttgat
     2161 gatttgtcga tacgccgggg cgcgtgctcc aggagcgtat tcagcaattc tctcttcagc
     2221 ttccatcaac attggtgtgt tatggaaggc tggcgtgttc tgaataaact cgcaaacttg
     2281 cgtatcgacc agaataagtc tggcacgacc gcctttcacg ccgggaaatt tttccgtttt
     2341 ccagcctttt tctctgatcc aacggttaac agtttgttta gccacaccga ggcattcagc
     2401 cagttcttcg gtggtcattt tattgcgtaa tcttttcata ttatttgcta tcgcgaatcc
     2461 ctaagccttg taacaatccg ataatccctt cccgcagaag caaggatgta aactgttttt
     2521 gttcaactgg cgtcatctct ttcgccagtg tcaccagcaa tacttcaagc ggcgcatcac
     2581 cagaaagggc aggcgcttct ccctgacctt ctggacgttc agcattgcga atatattcac
     2641 gaacctgttc attgacgtga accagtcggg ctttgccacc ctggacgcca ggttttggtg
     2701 acgttgtcca gccttccttg cgtacccatt tattaatggt ctggcggcta tagccggtca
     2761 gtctggcaag ttcatctggt gtcatcctct ccttgaacat aacaattccc tgaatgtatg
     2821 tgggtctatt agtagttcat tttataacac cactttacag gaaaccgtga catgaataac
     2881 tactgaatgc gagcggtttt ccaaaattgt tcatttgcct gatttttcag cgattgaaac
     2941 tacacgttgc aatttgccgt tgacacattc gggcggaatt catatgatgc cgcccgtcaa
     3001 ctcaacaagc tttacgtgac ggggctatag ctcagctggg agagcgcttg catggcatgc
     3061 aagaggtcag cggttcgatc ccgcttagct ccaccaaatt ttgcacccag caaatttggt
     3121 acgtaaacgc atcgtggggc tatagctcag ctgggagagc gcttgcatgg catgcaagag
     3181 gtcagcggtt cgatcccgct tagctccacc aaatttccaa ccctcgctgc aaagcggggg
     3241 ttttttgtct ctgctttttg ccgcttttgt aatacagtct acgtccgggt tagtgccgcc
     3301 tggtgaaagc atcattggat gaaaaatcgg caacaggctg gccccctgtt tgcttcgcga
     3361 tgcgaataaa cttattattt gtgtgcctga aaaccccgat cagtgagagt agtgtactca
     3421 tgtttgtgga gcataacctg ataaaaaata tcaagatatt cacactagcg tttacgctca
     3481 ccgtggtact tattcagcta tcccgtttta tttcgccact tgccattatc cattccagtt
     3541 atatctttct ggcgtggatg ccactgtgcg taatgctgtc aatcttgttt atctttggct
     3601 ggcgaggtgt cgttcccgtt ttatgcggga tgttttgcac caatctgtgg aac
//
LOCUS       DADMHM010000276         3631 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.281, whole genome shotgun sequence.
ACCESSION   DADMHM010000276 DADMHM010000000
VERSION     DADMHM010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3631)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3631)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3631
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.281"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..202)
                     /locus_tag="JN125_003967"
     CDS             complement(<1..202)
                     /locus_tag="JN125_003967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709350.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873548.1"
                     /translation="MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTAT
                     FGNYAYLRAEKLGQLDNFFTHIC"
     gene            complement(367..558)
                     /locus_tag="JN125_003968"
     CDS             complement(367..558)
                     /locus_tag="JN125_003968"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873549.1"
                     /translation="MGPALGAARLAQIAANPEKSLIELLPQLPLEQSHLPDAQRYAAY
                     QPRRETFRRLYQQLLPLMA"
     gene            complement(491..1819)
                     /gene="xylB"
                     /locus_tag="JN125_003969"
     CDS             complement(491..1819)
                     /gene="xylB"
                     /locus_tag="JN125_003969"
                     /EC_number="2.7.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005054141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylulokinase"
                     /protein_id="HAY8873550.1"
                     /translation="MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQD
                     PEQWWQATDRAMKALGDQHSLQDVKALGIAGQMHGATLLDAQQRVLRPAILWNDGRCA
                     QECTLLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRM
                     TGEFASDMSDAAGTMWLDVAKRDRSDVMLQACDLSRDQMPALYEGSEITGALLPEVAK
                     AWGMATVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHS
                     FCHALPQRWHLMSVMLSAASCLDWVAKLTGLCNVPALIAAAQQADESAEPVWFLPYLS
                     GERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVVHACGIKPQSVTL
                     IGGGARSEYWRQMLADISGQQLDYRTGGSGASTGRSKAGADCGESREIAH"
     gene            complement(1891..3213)
                     /gene="xylA"
                     /locus_tag="JN125_003970"
     CDS             complement(1891..3213)
                     /gene="xylA"
                     /locus_tag="JN125_003970"
                     /EC_number="5.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xylose isomerase"
                     /protein_id="HAY8873551.1"
                     /translation="MQAYFDQLDRVRYEGSKSSNPLAFRHYNPDELVLGKRMEEHLRF
                     AACYWHTFCWNGADMFGVGAFNRPWQQPGEALALAKRKADVAFEFFHKLHVPFYCFHD
                     VDVSPEGASLKEYINNFAQMVDVLAAKQEESGVKLLWGTANCFTNPRYGAGAATNPDP
                     EVFSWAATQVVTAMEATHKLGGENYVLWGGREGYETLLNTDLRQEREQLGRFMQMVVE
                     HKHKIGFQGTLLIEPKPQEPTKHQYDYDAATVYGFLKQFGLEKEIKLNIEANHATLAG
                     HSFHHEIATAIALGLFGSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTG
                     GLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDGELDKRIAQRYSGWNS
                     ELGQQILKGQMSLADLAKYAQEHNLSPVHQSGRQEQLENLVNHYLFDK"
BASE COUNT          950 a          984 c          808 g          889 t
ORIGIN      
        1 ggcagatatg ggtaaaaaaa ttatccagtt gcccgagttt ttctgcgcga agatatgcat
       61 agttaccaaa agttgctgtc attaacacgc caagaaaata gccttttcca cttagcaatg
      121 ggcatgagat ccatagccca accagataaa ccagcgcccc gacaacaaat aatagttttg
      181 ccacagtttt tgaggttttc ataacgatct ccatatctac cagcgataca ttacgagtaa
      241 ccaacgaaag acaaaactga aaaatgccat taacaaatga ttttcagaat aaattcatac
      301 taaatattaa ttagtgagat atatagatgt gaattatccc ccacccggtc aggcagggga
      361 taacgtttac gccattaatg gcagaagttg ctgatagagg cgacggaacg tttcacgtcg
      421 tggctgataa gcggcataac gctgcgcatc tggtagatgc gactgttcta acggtagctg
      481 cggcaacaac tcaatgagcg atttctctgg attcgccgca atctgcgcca gccttgctgc
      541 gcccagtgct ggccccactt ccccccgtac ggtaatcgag ctgctgaccg ctgatatccg
      601 ccagcatctg acgccagtac tcactacgcg ccccgccacc aatcaacgta acactttgcg
      661 gtttaatgcc gcaggcatgc acgacatcca tgccatctgc cagcgcataa cccacgcctt
      721 ccagcactgc tcgcgccagt tcattggggc catgttgatg agtcaaacca aagaaaaccc
      781 ccttcgcctg gggattattg tgtggtgtac gctcgccgga aagataaggc agaaaccaaa
      841 ctggctcggc actttcatca gcctgttgag ctgcagcgat taaagctggg acattgcaca
      901 ggccggttaa tttcgcgacc caatccagac acgatgctgc actcagcatt acagacatta
      961 aatgccaacg ctgcggtagc gcatggcaaa agctgtgtac agcgctttct ggcttgctta
     1021 agaacccttc gctgacagca aaatagaccc ccgacgtccc cagcgataac attgcctgat
     1081 tagcatcaac cattcccaca ccaactgcac cagctgcatt gtcgccaccg cctgcgacaa
     1141 ctggcaccgt cgccataccc cacgctttcg caacttcagg taacaaagca ccagtaattt
     1201 cgctgccttc gtataatgcg ggcatctggt cacgagataa gtcgcaagcc tgcagcatga
     1261 cgtcactccg gtcacgcttt gcgacatcca gccacatggt gccagctgcg tcagacatat
     1321 cgctggcaaa ctcccccgtc atacgcagac gcaagtaatc tttcggtaat aatactttgt
     1381 cgatttgacg gaatatctcc ggctcatgcc gctgaaccca tagcaattta ggcgcagtaa
     1441 atccgggcat catcaggttg ccggtaatca ctcgtgattg cggaactctc gcttccagca
     1501 aagtgcactc ttgcgcacag cgcccgtcgt tccacaaaat ggcagggcgc aatacccgtt
     1561 gttgagcatc cagtaaggtt gctccatgca tctggccggc aatacccaat gctttaacgt
     1621 cctgcagaga atgctgatcg cccagagctt tcattgcgcg atcagttgcc tgccaccact
     1681 gttccgggtc ttgttccgac cagagtggat gcgggcgcga aacggtcagc ttttccgttt
     1741 gcgaagcaac cacctcaccc tgctcgttga gcaaaataac ttttacgccc gaggtgccaa
     1801 gatctatccc gatatacata tcgatcgttc cttaaaaaaa tgcccggtat cgctaccgat
     1861 aaccgggcca acggactgca cagttagccg ttatttgtcg aacagataat gatttaccag
     1921 attttccagt tgctcctggc gaccactctg atgcaccgga gacaaattat gttcctgagc
     1981 atatttggct aaatctgcca gtgacatttg gcctttcagg atttgctggc ccaattcgct
     2041 attccagccg gaataacgct gcgcgatgcg tttatccagc tcgccatctt caatcatgcg
     2101 cgctgcaatt ttcagcgcca gtgccatcgt atccatcgcg ccgatatgac cgtaaaacag
     2161 atcatattta tcagtacttt gacgacgtac tttggcatcg aagttcagac caccggtggt
     2221 gaaaccgcct gctttgagaa tttcatacat caccagcgca ttctcttcca cactgttcgg
     2281 gaactggtcg gtgtcccagc ccagttgcgc atcgccacgg ttggcgtcga cagaaccgaa
     2341 caggccaagc gcaatggcgg tggctatttc atgatggaaa gagtgacctg ccagcgtcgc
     2401 gtggttagct tcaatgttca gtttaatctc tttttccaga ccaaactgtt tcaggaagcc
     2461 atagaccgtc gcggcatcgt aatcatattg atgtttagtc ggttcttgcg gtttcggttc
     2521 gataagcaac gtgccctgga agccgatttt atgtttatgc tcaaccacca tctgcataaa
     2581 gcggcccagt tgttcacgct cctgacgcaa gtcggtattt aacagcgttt cgtaaccttc
     2641 acgaccaccc cacaggacat agttttcacc gcccaattta tgggttgctt ccatcgctgt
     2701 aacaacttgc gttgccgccc agctgaagac ttcaggatct gggttcgtcg ccgcacccgc
     2761 gccatagcga gggtttgtaa agcagttagc ggttccccac agcagcttca cgccgctctc
     2821 ttcttgcttg gctgccagga catcaaccat ttgcgcaaaa ttattgatgt actcttttaa
     2881 cgacgcgccc tcaggggaaa catccacatc gtggaagcaa taaaatggca catgtaactt
     2941 gtggaaaaac tcaaatgcga catctgcttt acgcttcgcc aacgccagtg cctcaccagg
     3001 ctgctgccac ggacgattaa acgcccccac accaaacatg tccgccccgt tccagcagaa
     3061 ggtgtgccag tagcaggcgg caaaacgcaa gtgctcttcc atacgcttac ccaacaccag
     3121 ttcgtcggga ttgtagtgac ggaatgctaa cgggtttgag gattttgagc cttcataacg
     3181 aacgcgatcg agctggtcaa aataggcttg catattgaac tccataatca ggtaatgccg
     3241 cgggtgatgg atgatgtcgt aatattgggc actccctttc agttgctcaa ttatgttatt
     3301 tcacactgct attgagataa ttcacaagtg tgcgctcgct cgcaaaataa aatgggatga
     3361 tgaaactggg taattcctcg aagataaaaa tgcaataagt acaattgcgc aacaaaagta
     3421 agatctcggt cataaatcaa gaaataaacc aaaaatcgta atcgaaagat aaaaatctgt
     3481 aattgttttc ccctgtttag ttgctaaaaa ttggttacgt ttatcgcggt gattgttact
     3541 tattaaagct gtcctctaac tacagaaggc cctacaccat gaaaataaag aacatgaggt
     3601 gtactggcaa tagcggacac taccatttgt t
//
LOCUS       DADMHM010000277         3624 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.282, whole genome shotgun sequence.
ACCESSION   DADMHM010000277 DADMHM010000000
VERSION     DADMHM010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3624)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3624)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3624
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.282"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..809
                     /locus_tag="JN125_003971"
     CDS             <1..809
                     /locus_tag="JN125_003971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF945 domain-containing protein"
                     /protein_id="HAY8873552.1"
                     /translation="RFGYAANQIRRDRPLTHEELIRHVPSIFGEDRHTSRSERYAYIP
                     TITVLENLQREGFQPFFACQTRVRDPGRRGYTKHMLRLRRAGEINGEHVPEIILLNSH
                     DGTSSYQMLPGYFRFVCQNGCVCGQSLGEVRVPHRGNVVEKVIEGAYEVVGVFDRIEE
                     KRDAMQSLVLPPPARQALAQAALTYRYGDEHQPVTTADILTPRRREDYGKDLWSAYQT
                     IQENMLKGGISGRSAKGKRIHTRAIHSIDTDIKLNRALWVMAETMLESLR"
     gene            891..1370
                     /locus_tag="JN125_003972"
     CDS             891..1370
                     /locus_tag="JN125_003972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antirestriction protein"
                     /protein_id="HAY8873553.1"
                     /translation="MKTVSQNTPTIYSATTPENNPPQLVASLVPDEQRINFWPQHFGL
                     IPQWVTLEPRVFGWMDRLCEDYCGGIWNLYTLNNGGAFMAPEPDDDDDETWVLFNAMN
                     GNRAEMSPEAAGIAACLMTYSHHACRTENYAMTVHYYRLRDYALQHPECSAIMRIID"
     gene            1386..1862
                     /locus_tag="JN125_003973"
     CDS             1386..1862
                     /locus_tag="JN125_003973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RadC family protein"
                     /protein_id="HAY8873554.1"
                     /translation="MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVTFTSTRAAR
                     EWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPREVIKRALYHNAAA
                     VVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL"
     gene            1925..2146
                     /locus_tag="JN125_003974"
     CDS             1925..2146
                     /locus_tag="JN125_003974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF987 domain-containing protein"
                     /protein_id="HAY8873555.1"
                     /translation="MKIITRGEAMRIHQQHPTSRLFPFCTGKYRWHGSAEAYTGREVQ
                     DIPGVLAVFAERRKDSFGPYVRLMSVTLN"
     gene            2220..2588
                     /gene="cbtA"
                     /locus_tag="JN125_003975"
     CDS             2220..2588
                     /gene="cbtA"
                     /locus_tag="JN125_003975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV toxin-antitoxin system toxin CbtA"
                     /protein_id="HAY8873556.1"
                     /translation="MSDTLPGTTLPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYL
                     ADRAGIRGLFSDADAYHLDQAFPLLMKQLELMLTSGELNPRHQHTVTLYAKGLTCKAD
                     TLSSCGYVYLAVYPTPEMKN"
     gene            2677..3051
                     /gene="cbtA"
                     /locus_tag="JN125_003976"
     CDS             2677..3051
                     /gene="cbtA"
                     /locus_tag="JN125_003976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV toxin-antitoxin system toxin CbtA"
                     /protein_id="HAY8873557.1"
                     /translation="MKTLPVLPGQAASSRPSPVEIWQILLSRLLDQHYGLTLNDTPFA
                     DERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGFSACTRSQLINSIDILRARRATG
                     LMTRDNYRTVNNITLGKYPEAK"
     gene            3048..3242
                     /locus_tag="JN125_003977"
     CDS             3048..3242
                     /locus_tag="JN125_003977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310834.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873558.1"
                     /translation="MMTLEADSVNVQALDMGHIVVDIDGVNITELINKAAENGYSLRV
                     VDDRDSTETPATYASPHQLL"
     gene            3255..3368
                     /locus_tag="JN125_003978"
     CDS             3255..3368
                     /locus_tag="JN125_003978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001161660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF957 domain-containing protein"
                     /protein_id="HAY8873559.1"
                     /translation="MQGIVPLTTETALLSCIKQAREDVLTLRHLQLLHQNR"
BASE COUNT          882 a          991 c          928 g          823 t
ORIGIN      
        1 gtcgttttgg ttatgctgca aaccagatac gccgtgaccg tccgctgaca catgaagaac
       61 tgatacgcca tgtacccagt atttttgggg aagaccggca cacctcccgc agtgaacggt
      121 atgcgtacat tcccaccatt accgtcctgg aaaatctgca gcgggaaggc tttcagccgt
      181 tcttcgcctg ccagacccgt gtgcgcgacc cgggccgccg gggatacaca aaacacatgc
      241 tgcgtctgcg gcgggccgga gagataaacg gagaacatgt ccctgaaatt attctgctca
      301 actctcatga cggtacctcc agctaccaga tgctgccggg ttacttcagg ttcgtctgcc
      361 agaacgggtg cgtctgtggc cagtctctgg gggaagtgcg tgttccacac cggggaaatg
      421 tagtggagaa agttatcgaa ggggcttacg aggtggtggg cgtgtttgac cggatagagg
      481 agaagcgtga tgccatgcag tcgctggtcc tgccgccacc ggcacgccag gcgctggcac
      541 aggcggcact gacttaccgt tatggtgacg aacatcagcc cgtcaccacc gccgacattc
      601 tgacgccgcg acgccgggag gattacggta aggacctgtg gagcgcatat cagaccatcc
      661 aggagaatat gctgaaaggc gggatttccg gtcgcagtgc aaaaggaaaa cgtatccata
      721 cccgggccat tcacagcatt gataccgaca ttaagctcaa tcgcgcattg tgggtgatgg
      781 cagaaacgat gctggagagc ctgcgctgat gccgtttccc tgagtgaggg aatcattcag
      841 ctttcgttcc tgaaaaacac acatttattt gttatttaag gagttatctc atgaaaaccg
      901 tttctcagaa tacccccaca atttattcag ctacaacacc agagaataat ccgcctcagt
      961 tggttgccag cctcgtccct gatgaacagc gcatcaactt ctggccgcag cattttggcc
     1021 tcattccaca gtgggtgacc ctggagcccc gtgtcttcgg ctggatggac cgtctgtgcg
     1081 aagactactg cggtggtatc tggaatctgt acaccctgaa caacggcggg gcatttatgg
     1141 cacccgaacc ggatgacgat gatgacgaaa catgggtact gttcaatgcc atgaacggta
     1201 accgcgcaga aatgagcccg gaagccgccg gtattgccgc ctgtctgatg acgtacagtc
     1261 atcatgcctg tcgtacggag aattatgcca tgacggtcca ttattaccgg ttgcgggatt
     1321 acgccctgca gcatccggaa tgcagcgcca ttatgcgcat catcgactga atggagagaa
     1381 gcacaatgca acaactttcc tttctgcccg gagagatgac tcccggcgag cgcagcctca
     1441 ttcaacgggc cctgaaaacc ctggaccgcc atcttcatga acccggcgtg accttcacct
     1501 ccacccgtgc agcacgggaa tggctgattc tgaacatggc gggactggag cgtgaagaat
     1561 tccgggtgct gtatctgaac aaccagaatc agctgattgc cggtgaaacc ctcttcaccg
     1621 gcaccatcaa ccgcacggaa gtccatcccc gggaagtgat taaacgcgcc ctgtaccaca
     1681 atgccgctgc cgtggtactg gcacacaatc acccgtccgg tgaagtcaca cccagtaagg
     1741 cagaccggct tatcaccgaa cgtctggtac aggcactggg cctggtggat atccgggtgc
     1801 cggaccatct gatagtcggt ggcaaccagg ttttctcctt tgccgaacat ggtctgcttt
     1861 aacccttcac aaccacatca cacctgtttt cacttttatc ttctgtcttc agaggtatcc
     1921 cattatgaaa attatcaccc gtggtgaagc catgcgtatt caccaacaac atccgacatc
     1981 ccgtcttttt ccgttctgta ccggtaaata ccgctggcac ggcagtgctg aagcgtatac
     2041 cggtcgtgaa gtgcaggata ttcccggtgt gctggccgtg tttgctgaac gccgtaagga
     2101 cagttttggt ccgtatgtcc ggctgatgag cgtcaccctg aactgagtgg gaattctgat
     2161 gagcagaatt atcgccacta ccggaccatt cttagccgat tttctgtaag gattttatcg
     2221 tgtcagacac actccccggg acaacacttc ccgacgacaa tcacgaccgc ccctggtggg
     2281 ggctgccctg caccgtgacg ccctgtttcg gggcacgtct ggtgcaggag ggtaaccggt
     2341 tgcattacct tgccgaccgc gccggtatca gaggcctgtt cagcgatgca gatgcgtacc
     2401 acctggacca ggcctttccg ctgctgatga aacaactgga actcatgctc accagcggtg
     2461 aactgaatcc ccgccatcag cataccgtca cgctgtatgc aaaagggctg acctgcaaag
     2521 ccgataccct cagcagttgt ggttacgttt atctggctgt ttatccgacg cccgaaatga
     2581 aaaattaact ctccagaata gccttctgct acggcctggt gttttcacca cgccactttt
     2641 ccatttttat atctgcatat caggaaaatc ttcagtatga aaacattacc tgtattaccc
     2701 gggcaggcgg ccagttctcg cccgtctcct gttgaaatct ggcagatact gctgtcccga
     2761 ctgctggacc agcactatgg cctcacactg aatgacacac cttttgccga tgaacgtgtg
     2821 attgagcagc atattgaggc aggcatttca ctgtgtgatg cggtgaactt tctcgtggaa
     2881 aaatacgcgc tggtgcgtac cgaccagccg ggattcagcg cctgtacccg ctctcagtta
     2941 ataaacagca tcgatatcct ccgggctcgc agggcgaccg gcctgatgac ccgcgacaat
     3001 tacagaacgg taaataacat taccctgggt aagtatccgg aggcgaaatg atgacactgg
     3061 aagccgacag cgttaacgta caggcgctgg atatgggaca cattgtcgtt gacattgatg
     3121 gtgttaatat cactgaactg attaataagg ccgctgaaaa cggttattca ctccgcgtgg
     3181 tggatgaccg tgactctacc gaaacaccgg caacttatgc cagccctcac cagttgctgt
     3241 aagacaatgc agtgatacag ggtatagtgc cattaaccac agaaacagca ctgttgtcct
     3301 gtattaagca ggcaagagaa gatgtcctta ccctgcgcca tctgcagctt ctgcaccaga
     3361 accggtgaat ctcactcaac aggcttcatt tctcctgacg ccagcctgaa tacagctggc
     3421 gttttcattt ataaacagaa aggaaaaccg ataataatgg aatggacgcc ccgaccatga
     3481 agcaacggta ggatattact gataaacctt ccagtggagg tgcgttatgg ccgttttaac
     3541 gattagcatt gacctgacaa aaaatgaatt ccaaatccac ggtctgggta ggaacagaaa
     3601 aatctaagct cagaaaacgg atta
//
LOCUS       DADMHM010000278         3621 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.283, whole genome shotgun sequence.
ACCESSION   DADMHM010000278 DADMHM010000000
VERSION     DADMHM010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3621)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3621)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3621
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.283"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..594
                     /locus_tag="JN125_003979"
     CDS             <1..594
                     /locus_tag="JN125_003979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HAY8873560.1"
                     /translation="VLKQHVMAPLIAYFRDARAALGITAKQIADATGKKNMVSHWFSA
                     SQWQLPNESDYLKLQSLFARVAEEKHQRRELEKSHYQLVSTYSELSRQYMELLSEYKN
                     LRRYFGVTVQVPYTDVWTYKPVQYYPGKHPCEKPAEMLQQIINASSRPGDQVADFFMG
                     SGSTVKAALALGRRAIGVELETGRFEQTVREVQDLIV"
     gene            644..719
                     /locus_tag="JN125_003980"
     tRNA            644..719
                     /locus_tag="JN125_003980"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:677..679,aa:Ile,seq:cat)
     gene            726..801
                     /locus_tag="JN125_003981"
     tRNA            726..801
                     /locus_tag="JN125_003981"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:761..763,aa:Arg,seq:tcg)
     gene            817..893
                     /locus_tag="JN125_003982"
     tRNA            817..893
                     /locus_tag="JN125_003982"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:851..853,aa:Arg,seq:tct)
     gene            complement(940..1127)
                     /locus_tag="JN125_003983"
                     /pseudo
     CDS             complement(940..1127)
                     /locus_tag="JN125_003983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001302519.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1396..1629
                     /locus_tag="JN125_003984"
     CDS             1396..1629
                     /locus_tag="JN125_003984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000874462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1737 domain-containing protein"
                     /protein_id="HAY8873561.1"
                     /translation="MAFKHYDVVRAASPSDLAERLTQKLKEGWQPFGSPVAITPYTLM
                     QAIAAEGDVTTPVVVKPSDGEGAVISTTSNPEY"
     gene            1663..3357
                     /locus_tag="JN125_003985"
     CDS             1663..3357
                     /locus_tag="JN125_003985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000323228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialate O-acetylesterase"
                     /protein_id="HAY8873562.1"
                     /translation="MAYGEGLPLPETYDRPDPRIKQLARRSTVTPGGASCNYNDIIPA
                     DHCLHDVQDLSKFSHPKASAAQYGCVGQGLHIAKKLLPFIPANAGILLVPCCRGGSAF
                     LAGDEGTFSESTGASETSARWGVDKPLYKDLLTRTQAALKANPKNILLAVVWMQGEFD
                     LKQGAYATQPGLFDSMVEKYRSDLSEFGGQCLGGSPSSVPWICGDTTYYWKQTYSSQY
                     DAVYGAYKTKSAKKIFFVPFMTDENGRNVGTNEPSEDPDVADIGYYGAGGRTDAKTWT
                     TADRKTHFGSWARRGIISDRLATAILVHAGRTAEFITGKQPDTVKPTGPSGEGTEREP
                     EAPVSNRTLMSLLASGEDLASQGWRYYHKPASGDNVNKNIAEAVVSDAGATGGKALQL
                     NKPENHIWFLEHDAAGQGVELLKKGGRVSVQFKLPGSLVPNRFALGIYWQLSSLPEGV
                     TLAEEGNDMLMSFFLQTDATNLNAMYHKKPNAKLDTFGVFDNGWHTLDFEFAGNNSIQ
                     VTPVLDEKRGTPFTLVKSPASGAADKLQLTGISKAATYTLLIASVKVEVNNADAAA"
     gene            3493..>3621
                     /locus_tag="JN125_003986"
     CDS             3493..>3621
                     /locus_tag="JN125_003986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1378 family protein"
                     /protein_id="HAY8873563.1"
                     /translation="MTFIHQVMLYFCTAVCVLYLLSGGYRAVRDFWRRQIDKRAAEK"
BASE COUNT          887 a          855 c         1061 g          818 t
ORIGIN      
        1 gtactgaaac agcatgtgat ggccccgctg attgcttact ttcgtgatgc gcgagctgcc
       61 ctggggataa cggcaaaaca gattgcagat gccacaggaa agaaaaacat ggtgtcgcac
      121 tggttcagtg ccagtcagtg gcagctaccg aacgaaagcg attatctgaa attacagtcg
      181 ctgtttgccc gggtggcaga agagaaacat cagcggagag aactggaaaa gtcccattac
      241 caactggtca gcacatacag tgagctgagc cggcagtata tggaactgct gagtgaatat
      301 aaaaatttgc ggaggtattt cggtgtgacg gtgcaggtgc cgtacaccga tgtgtggacg
      361 tataaaccgg tgcagtacta tccagggaaa catccgtgcg aaaaaccggc agaaatgttg
      421 cagcagataa tcaacgcgag cagtcgtccg ggagaccagg ttgcagattt ttttatgggc
      481 tcaggttcaa cggtaaaagc ggcactggcg ctcgggcgtc gtgcgattgg cgttgaactg
      541 gagaccggac gttttgagca gacagtcagg gaagttcagg atttaatcgt ttgaaacgga
      601 tgagattgca gaattaatta cgcaccatta ttattctgct cccggccctt tagctcagtg
      661 gtgagagcga gcgactcata atcgccaggt cgctggttca aatccagcaa gggccaccat
      721 cacataccgc cattagctca tcaggaaaga gcgccagcct tcgaagctgg ttgcgcggag
      781 ttcgggtccc cgaaggcggt tcattatctg tatcctgcgt tgttagctca gccggacaga
      841 gcaattgcct tctaagcaat cggtcactgg ttcgaataca gtagaacgcg ccacacttat
      901 tttccctggc tcgcttttgc gggctttttt ttaaatgtct cacaattcag gcggttgact
      961 gttgtctggt ttgcggggag tttgtaaaaa gaaactggca tggtgaatcc ccctgtgcgg
     1021 aggggcaatc agcaactggt gttttgtccc gacccttatc ctttctgtgc gggttcaggt
     1081 gctgatactg aactcaccgg gaggcacccg gcaccatgca atggcacata gcgccactct
     1141 ccagcccctc tccggagggg ctttcttatg gacaaaaaaa tcccgcgctg ggagacgcgg
     1201 gcggcaagga ataaacaaca aaacgtgaag taatatttca gctggcgaat aatatccgac
     1261 agtaatcact ctgcgcaata gcgcggcctt tttcatattg cgggctgttg tctatcttct
     1321 gccattgtcc tgtaacttcc ggacttcagc ccgctcctca ttttactcac aatattatcc
     1381 aggccgggag gattcatggc atttaaacac tatgacgtgg tcagggcggc gtcgccgtca
     1441 gaccttgcgg agcgactgac acaaaaactg aaggaggggt ggcagccatt tggcagtccg
     1501 gtggccatca cgccttatac cctgatgcag gccattgcgg cggaaggtga tgtcaccaca
     1561 cctgtggtgg tgaagccgtc ggatggagaa ggcgcagtta tcagcaccac cagcaacccg
     1621 gagtattaat ttgttgttgc cctggccggg cagtcaaacg gtatggcgta tggtgaaggg
     1681 cttccgctgc cggagacata tgaccgtccg gacccgcgta ttaaacagct ggcgcgtcgc
     1741 agcactgtca cgccgggtgg tgcgtcctgt aactacaatg acattattcc tgcggaccac
     1801 tgcctgcatg atgttcagga tttgagtaag ttttcacacc cgaaagccag cgcagctcag
     1861 tatggatgcg tggggcaggg attacatatc gcgaagaaat tgttgccgtt tattccggcg
     1921 aatgccggta ttcttctggt tccgtgctgc cgtggtggtt ctgcattttt ggcgggcgat
     1981 gaaggtacct tcagcgaatc caccggcgca agcgagacct cggcacgctg gggtgtagat
     2041 aagccactgt acaaggacct gcttacccgt actcaggccg cactgaaggc taaccctaaa
     2101 aatattctgc ttgcagtggt ctggatgcag ggcgagtttg atttgaaaca gggtgcatac
     2161 gccactcagc cggggctgtt tgattccatg gtggaaaaat atcgttctga cctgtcggaa
     2221 ttcggaggtc agtgtctcgg gggctctccg tcatcggttc cctggatttg tggcgacacg
     2281 acctactact ggaagcagac ttattcttcg caatacgatg cggtgtatgg tgcatacaag
     2341 acgaaatccg caaaaaaaat cttctttgtg ccgtttatga cggatgaaaa cgggcgaaat
     2401 gtgggtacca acgagccgtc agaagatccg gatgttgcgg atattgggta ttacggagcc
     2461 ggtggtcgaa cggacgccaa aacctggacg acggccgacc gtaaaacgca ttttggatca
     2521 tgggcacgtc gtgggattat ttccgaccgt ctggcaacgg cgattcttgt gcatgccggg
     2581 agaaccgctg aattcattac cggaaaacag cctgatacgg tgaagcccac cggaccttcc
     2641 ggtgaaggta cggagagaga gccggaagcc ccggtcagta accgaaccct gatgagtctg
     2701 ctggcgtccg gcgaagacct ggcatcacag ggctggcgct attatcacaa accggcgagc
     2761 ggagacaatg ttaacaaaaa cattgctgaa gcggtggtca gtgatgcggg ggctacggga
     2821 ggtaaggccc tgcaactgaa taaaccggaa aaccacatct ggtttctgga gcatgatgca
     2881 gccggacagg gagtggagtt actgaagaag gggggacgtg tgagcgtaca gtttaagttg
     2941 ccgggttcac tggtgccgaa tcggtttgcc ctgggcattt actggcagtt gtcgtccctg
     3001 ccggagggag tgacgctggc agaggaaggc aacgacatgc tgatgtcctt cttcctgcag
     3061 acggatgcga cgaacctgaa cgcgatgtac cacaagaagc cgaatgcgaa gctggatacg
     3121 ttcggggtct ttgataacgg atggcacaca ctggattttg agtttgccgg aaacaacagc
     3181 attcaggtga cgccggtact ggatgagaaa cgggggacgc cgttcacact ggtgaaatct
     3241 ccggcatcag gggcggcgga caaactgcaa ctgacaggca tatcaaaggc ggcgacatat
     3301 acgctgctga ttgccagtgt gaaggtggaa gtgaacaacg cggatgccgc ggcatgataa
     3361 aaaaagccgc cagcggcagg aacggaagct ggcggaggta atcccaatgg agaatgtaaa
     3421 gaaaagatgc tttcgtatac cggtttttta aatgaaaaca gttctcattg tcaaccataa
     3481 cggtaagaaa ctatgacatt tattcatcag gtgatgctgt acttctgtac ggcggtctgt
     3541 gtgctgtatc ttctttcggg tgggtacagg gcagtgcgcg atttctggcg caggcagatt
     3601 gataaaaggg ccgcagagaa a
//
LOCUS       DADMHM010000279         3618 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.284, whole genome shotgun sequence.
ACCESSION   DADMHM010000279 DADMHM010000000
VERSION     DADMHM010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3618)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3618)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3618
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.284"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            124..381
                     /locus_tag="JN125_003987"
     CDS             124..381
                     /locus_tag="JN125_003987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2534 family protein"
                     /protein_id="HAY8873564.1"
                     /translation="MIMAKLKSAKGKKFLFGLLAVFIIAASVVTRATIGGVIEQYNIP
                     LSEWTTSMYVIQSSMIFVYSLVFTVLLAIPLGIYFLGGEEQ"
     gene            complement(443..1381)
                     /gene="uspE"
                     /locus_tag="JN125_003988"
     CDS             complement(443..1381)
                     /gene="uspE"
                     /locus_tag="JN125_003988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein UspE"
                     /protein_id="HAY8873565.1"
                     /translation="MAMYQNMLVVIDPNQDDQPALRRAVYLHQRIGGKIKAFLPIYDF
                     SYEMTTLLSPDERTAMRQGVISQRTAWIHEQAKYYLNAGVPIEIKVVWHHRPFEAIIQ
                     EVISGGHDLVLKMAHQHDRLEAVIFTPTDWHLLRKCPSPVWMVKDQPWPEGGKALVAV
                     NLASEEPYHNALNEKLVKETIELAEQVNHTEVHLVGAYPVTPINIAIELPEFDPSVYN
                     DAIRGQHLLAMKALRQKFGINENMTHVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGI
                     SAAFLSNTAEQVIDHLRCDLLVIKPDQYQTPVELDD"
     gene            complement(1533..2285)
                     /locus_tag="JN125_003989"
     CDS             complement(1533..2285)
                     /locus_tag="JN125_003989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007849744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FNR family transcription factor"
                     /protein_id="HAY8873566.1"
                     /translation="MIPEKRIIRRIQSGGCAIHCQDCSISQLCIPFTLNEHELDQLDN
                     IIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFD
                     AIGSGHHPSFAQALETSMVCEIPFETLDDLSGKMPNLRQQMMRLMSGEIKGDQDMILL
                     LSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYLGLTVETISRLLGRF
                     QKSGMLAVKGKYITIENNDALAQLAGHTRNVA"
     gene            complement(2480..2995)
                     /gene="ogt"
                     /locus_tag="JN125_003990"
     CDS             complement(2480..2995)
                     /gene="ogt"
                     /locus_tag="JN125_003990"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HAY8873567.1"
                     /translation="MLRLLEEKIATPLGPLWVICDEQFRLRAVEWEEYSERMVQLLDI
                     HYRKEGYERISATNPGGLSDKLSDYFAGNLSIIDTLPTATGGTPFQREVWKTLRTIPC
                     GQVMHYGQLAEQLGRPGAARAVGAANGSNPISIVVPCHRVIGRNGTMTGYAGGVQRKE
                     WLLRHEGYLLL"
     gene            complement(3006..>3618)
                     /locus_tag="JN125_003991"
     CDS             complement(3006..>3618)
                     /locus_tag="JN125_003991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415852.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="p-aminobenzoyl-glutamate transporter"
                     /protein_id="HAY8873568.1"
                     /translation="PLIILFFFVVSLAYGIATRTIRHQADLPHLMIEPMKEMAGFIVM
                     VFPLAQFVAMFNWSNMGKFIAVGLTDILESSGLSGIPAFVGLALLSSFLCMFIASGSA
                     IWSILAPIFVPMFMLLGFHPAFAQILFRIADSSVLPLAPVSPFVPLFLGFLQRYKPDA
                     KLGTYYSLVLPYPLIFLVVWLLMLLAWYLVGLPIGPGIYPRLS"
BASE COUNT          965 a          860 c          880 g          913 t
ORIGIN      
        1 actaatcaat gcgttgattg taaatccagc taagaggtga ggttttcaga gcagacaacg
       61 gtgaaatgtc atggtattgt tacgtttagg taacgagaaa tttgtctgca caaggattac
      121 atcatgatta tggcgaaact gaagtcagcg aaagggaaga aatttctctt tggtttgttg
      181 gcggttttca ttattgcggc gtcggttgtg actcgcgcga ctatcggcgg cgttatagaa
      241 cagtacaata ttccgctgtc tgagtggacg acatcaatgt atgtgattca gtcatcgatg
      301 atttttgttt atagcctggt ctttactgtg ttgctggcaa tcccgttggg aatttatttc
      361 cttggcggcg aagagcagta agtaaaaaat aggcccgata actcgggcct tgtcagttat
      421 tgaagagtcg ttaatcgtct tcttagtcat ccagttcaac gggtgtctga tactggtcag
      481 gtttaatgac caacagatcg cagcgaagat gatcaatcac ctgttccgcc gtgttgctga
      541 ggaatgctgc tgaaataccg gtgcgtccta ccgtgcccag aaccacaatc cccgcctgta
      601 agtgctccgc caaatcagga ataacctctt cgggcagacc tttttctacg tgcgtcatgt
      661 tttcattaat gccgaatttc tgccgcaggg ctttcattgc cagcaaatgt tgcccacgaa
      721 tggcatcgtt ataaacgctc ggatcaaatt ccggcagttc aatcgcgata ttaattggcg
      781 ttactgggta agcgccaacc agatgaactt cggtatggtt gacttgttct gccagttcga
      841 tcgtctcttt gaccagtttt tcattgagcg cattatgata cggctcttca ctggcgagat
      901 tcaccgccac cagcgcctta cctccttccg gccacggctg gtctttcacc atccacaccg
      961 ggcttgggca tttgcgtaac agatgccagt ccgttggagt aaaaatcacc gcttccagac
     1021 ggtcatgttg gtgcgccatt tttagcacca aatcgtgccc gccgctgatc acttcctgaa
     1081 tgatggcttc gaaaggacgg tgatgccaga ccactttaat ttcaatggga acgccagcat
     1141 tgagataata ttttgcctgc tcgtggatcc aggctgtacg ctggctgatg acgccctgac
     1201 gcatagcggt acgttcgtcc ggggagagca gggtggtcat ttcgtatgag aagtcataga
     1261 tcggcaaaaa ggctttaatt ttgccaccaa tccgttgatg taaataaaca gctcgccgca
     1321 atgctggttg gtcgtcctgg ttaggatcga taacaacgag catgttctga tacatagcca
     1381 tacagggtct ccttacaaca actgtcaacg cagtttgtaa ttaaaagatt aacccatatc
     1441 tggtgaatga aacagtgatg aaccttctgc cagatcaata aatcagaaaa atttaatgat
     1501 atgacagaag gatagtgagt tatgcggaaa aatcaggcaa cattacgcgt atgaccagca
     1561 agctgggcca gcgcatcgtt attttcgatg gtgatgtatt tacctttgac tgccagcata
     1621 ccgcttttct ggaagcgacc tagcagacgg ctgatggttt ctaccgtcag gcccagatag
     1681 ttaccgatat cgccacgagt catcgtcagg cggaattcac gaggggagaa gccgcgttgg
     1741 gcaaaacgac gggacaggtt gtagatgaat gcagccagac gttcctcggc atttttcttc
     1801 gacaacagca ggatcatgtc ctgatcgcct ttgatttcac cgctcatcag acgcatcatc
     1861 tgctgacgca gattcggcat tttaccggac aaatcgtcca gcgtttcgaa cgggatttca
     1921 cataccatcg aggtttccag cgcctgagcg aagctcgggt gatggccgct gccgatggcg
     1981 tcaaatccca ccaggtcgcc agctaaatgg aaaccagtga tttgctcgtc gccttgctca
     2041 gtgatggtat aacttttaat cgtaccggag cggatggcat aaagcgattt aagttcatca
     2101 ccagccttaa acagcgtctg gcctttctga ataggcttct tccgctcaat gatattatca
     2161 agctgatcaa gctcatgttc gttgagtgtg aacgggatgc aaagctggct gatgctgcaa
     2221 tcctggcaat ggatagcaca accgccagac tgaatgcgcc gtataattcg cttttccggg
     2281 atcataggtc tgctcaagcc gtaattgata tttgtcaatt ttaacatctt tttagggagc
     2341 aagtaagtct aagcaaacct taacagcaga gaattccgat attagatgta aatatatgtc
     2401 tatctatttg aaaaccatta agttgttaag ggtaacttta cataaaagtg tgaacaagct
     2461 ggcacaaatt gtttaatgtt tacagcaaaa gataaccttc gtggcgcaat aaccactctt
     2521 ttcgctgaac tccgcctgca tatccggtca tggtgccgtt tcggccaata acccgatggc
     2581 aaggtacgac gatgctgatg ggattcgatc cgtttgccgc accaacggca cgcgccgcgc
     2641 cagggcggcc caattgttca gccagttggc cgtaatgcat tacctgcccg caggggatag
     2701 tgcgtagagt tttccagact tcgcgctgaa atggcgtccc ccctgtggca gtgggaagcg
     2761 tatcaataat gctaagatta ccggcaaaat aatcactaag cttgtcgctt aaaccgcctg
     2821 ggttggtggc agaaatgcgc tcatagcctt ctttgcgata atggatgtcc agcagctgca
     2881 ccatgcgttc gctgtactct tcccattcaa ccgcccgcag gcgaaattgc tcatcgcaaa
     2941 tcacccacag tggacccagt ggcgtggcaa ttttttcttc aagtaatctc agcatccgtt
     3001 ctctcttaag acaaacgtgg gtaaatcccc ggacctatcg gcagaccaac aagataccac
     3061 gccagcaaca tcagcagcca taccaccaaa aagataagcg gatagggcaa gactaacgaa
     3121 tagtaagtac ccagtttcgc gtctggtttg tagcgttgca ggaatccaag aaacagtgga
     3181 acaaaaggag ataccggcgc taaaggcaat acggatgagt cggcaatacg aaagaggatt
     3241 tgcgcaaatg ccgggtgaaa gccaagtagc ataaacattg gtacgaaaat gggggccaga
     3301 atcgaccaga ttgcggaacc actggcaata aacatgcata agaaagagga aagcaacgcc
     3361 agaccgacaa acgccgggat gccgctaagc cctgaacttt ccagtatatc ggtcagcccc
     3421 acggcgatga atttccccat gttgctccag ttaaacatgg cgacaaactg ggcgagggga
     3481 aaaaccatca cgataaatcc cgccatctct ttcatcggtt caatcattaa atgcggtaaa
     3541 tccgcctgat gtcgaattgt gcgggtagcg atgccataag ccagcgaaac cacaaagaaa
     3601 aaaagaatga ttagtggc
//
LOCUS       DADMHM010000280         3617 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.285, whole genome shotgun sequence.
ACCESSION   DADMHM010000280 DADMHM010000000
VERSION     DADMHM010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3617)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3617)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3617
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.285"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            48..638
                     /locus_tag="JN125_003992"
     CDS             48..638
                     /locus_tag="JN125_003992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2726 domain-containing protein"
                     /protein_id="HAY8873569.1"
                     /translation="MKLIIFILIVLIIAALLIRIILRSVNQHSPLLMQLHAAGIRTGD
                     AERILSSGEYWQRQKTLLTEREVSFMKGLFRIVDMKRWYLCPQVRVADIVQLNGNIRP
                     RSRQWWQLFRMVSQWHVDVVIVELRSFSIVAAVELDDASHLRPERRRRDILLEEVLRQ
                     AGIPLLRSHDARKLLQMTGEWLNTTGADQQSPEHRS"
     gene            878..1138
                     /locus_tag="JN125_003993"
     CDS             878..1138
                     /locus_tag="JN125_003993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication regulatory protein RepA"
                     /protein_id="HAY8873570.1"
                     /translation="MSQTENAVTSSLSQKRFVRRGKPMTDSEKQMAAVARKRLTHKEI
                     KVFVKNPLKDLMVEYCEREGITQAQFVEKIIKDELQRLDILK"
     gene            1362..1436
                     /locus_tag="JN125_003994"
     CDS             1362..1436
                     /locus_tag="JN125_003994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RepA leader peptide Tap"
                     /protein_id="HAY8873571.1"
                     /translation="MPGKVQDFFLCSLLLRIVSAGWCD"
     gene            1429..2286
                     /gene="repA"
                     /locus_tag="JN125_003995"
     CDS             1429..2286
                     /gene="repA"
                     /locus_tag="JN125_003995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858393.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="incFII family plasmid replication initiator
                     RepA"
                     /protein_id="HAY8873572.1"
                     /translation="MTDLQQTYYRQVKNPNPVFTPREGARTLPFCGKLMEKAVGFTSR
                     FDFAIHVAHARSLGLRRRMPPVLRRRAIDALLQGLCFHYDPLANRVQCSITTLAIECG
                     LATESAAGKLSITRATRALTFLAELGLITYQTEYDPLIGCYIPTDITFTSALFAALDV
                     SEEAVAAARRSRVEWENRQRKKQGLDTLGMDELMAKAWRFVRERFRSYQTELKSRGMK
                     RARARRDADRQRQDIVTLVKRQLTREISEGRFTASREAVKREVERRVKERMILSRNRN
                     YSRLATASP"
     gene            complement(3270..>3617)
                     /locus_tag="JN125_003996"
     CDS             complement(3270..>3617)
                     /locus_tag="JN125_003996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000487120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HAY8873573.1"
                     /translation="LVFQFPIREQAAAFLGVVPVEKYSGTSVRGGPKLSKIGPPEIRA
                     KLYLASLCGLRFNPLMKAMYERLCLRGKAKMCAIGALMRKLVHWCYGVLKTQKPFDVG
                     YLSSYARSACKAA"
BASE COUNT          946 a          933 c          899 g          839 t
ORIGIN      
        1 gtaaggtaat aattcagcaa taattaattg ccaggagcag ataaataatg aagttgatta
       61 tttttattct cattgttctg attattgcag cgctacttat ccggattatc ctcagaagtg
      121 taaatcagca ttctcctttg ctgatgcaat tgcatgcggc aggtatacgg accggtgatg
      181 cagagcgaat actgtccagc ggtgaatact ggcaacgtca gaagacgctg ctgacagaaa
      241 gggaagtcag ttttatgaaa ggactgttca gaattgtgga tatgaagcgg tggtatctgt
      301 gtccgcaggt acgggtcgcg gatatcgtcc agctgaacgg gaatatccgg ccacgatcac
      361 gccagtggtg gcagttattc aggatggtgt ctcagtggca tgttgatgtg gttatcgttg
      421 agctgcgttc gttcagtatt gttgcagcag tagagctgga tgatgccagc catttacgac
      481 cggaacgcag acgccgggat attcttctgg aagaggttct gaggcaggct ggtattccgt
      541 tgctcagaag ccacgatgcc agaaaactgc tgcagatgac cggagaatgg ctgaatacaa
      601 caggggctga tcagcagtca ccggaacatc gtagctgacg ccttcgcgtt gctcagttgt
      661 ccaaccccgg aaacgggaaa aagcaagttt tcctcgctcc ctgcgtttcc ataactgaaa
      721 accatactat ttcacagttt aaatcacatt aaacgacagt aatccccgtt gatttgtgcg
      781 ccaacacaga tcttcgccac aattctcaag tcgctgattt caaaaaactg tagtatcctc
      841 tgcgaaacga tccctgtttg agtattgagg aggcgagatg tcgcagacag aaaatgcagt
      901 gacttcctca ttgagtcaaa agcggtttgt gcgcagaggt aagcctatga ctgactctga
      961 gaaacaaatg gccgctgttg caagaaaacg tcttacacac aaagagataa aagtttttgt
     1021 caaaaatcct ctgaaagatc tcatggttga gtactgcgag agagagggga taacacaggc
     1081 tcagttcgtt gagaaaatca tcaaagatga actgcagaga ctggatatac taaagtaaag
     1141 actttacttt gtggcgtagc atgctagatt actgatcgtt taaggaattt tatggctggc
     1201 cacgccataa ggtggcaggg aactggttct gatgtagatg tacaggagcc agaaaagcaa
     1261 aaaccccgat aatcttcttt aactttggcg agtcagaaag attaccgggg cccacttaaa
     1321 ccgtatagcc aacaatcaag ctatgcgggg agtatagtta tatgcccgga aaagttcaag
     1381 acttctttct gtgctcgctc cttctgcgca ttgtaagtgc aggatggtgt gactgatctt
     1441 caacaaactt attaccgcca ggtaaagaac ccgaatccgg tgttcacacc ccgtgaaggt
     1501 gcccggacgc ttccgttctg cgggaaactg atggaaaagg cggtgggctt cacctcccgt
     1561 tttgatttcg ccattcatgt ggcacatgcc cgttcgcttg gtctgcgtcg gcgcatgcca
     1621 ccggtactac gtcgccgggc cattgatgcg ctgctgcagg ggctgtgttt tcactatgac
     1681 ccactggcca accgcgtcca gtgttccatc accacgctgg ccattgagtg cggactggcg
     1741 acggagtctg ctgccggaaa actctccatc acccgggcca cccgggccct gacgttcctt
     1801 gcagagctgg gactgattac ctaccagacg gaatatgacc cgcttatcgg gtgctacatt
     1861 ccgaccgata tcacgttcac atctgcactg tttgctgccc tcgatgtatc agaggaggca
     1921 gtggccgccg cgcgccgcag tcgtgtggaa tgggaaaaca gacagcgcaa aaagcagggg
     1981 ctggataccc tgggtatgga tgaactgatg gcgaaagcct ggcgttttgt tcgtgagcgt
     2041 ttccgcagtt accagacaga gcttaagtcc cgtggaatga agcgtgcccg tgcgcgtcgt
     2101 gatgcggaca ggcagcgtca ggatattgtc accctggtga aacggcaact gacgcgtgaa
     2161 atctcggaag ggcgcttcac tgccagtcgt gaggcggtaa aacgtgaagt ggagcgtcgt
     2221 gtgaaggagc gcatgattct gtcacgtaac cgtaattaca gccggctggc cacagcttcc
     2281 ccctgaaagt gacctcctca gaataatccg gcacgcgccg gaggcattcg cacgcctgaa
     2341 gcccgccagt gcacaaaaaa tcagcgctac atacaaaaaa caacctcatc atccaccttc
     2401 tggtgcatcc ggtcccccct gtttttgata caaaacacgc ctcacagacg gggaattttg
     2461 cttatctaca ttaaactgca agggacttca ccataaggtt acaaccgttc acgtcataaa
     2521 gcgccagccg tcagccctac agggtgcaat gtatctttta aacacctgtt tatatctcct
     2581 ttaaactact taattacatt catttaaaaa aaaaacctgt tcactgcctg tcctgtggac
     2641 agacagatat gcacctccca ccgcaagcgg cgggccccaa ccgaagccgg tttagttaca
     2701 acatgcaaac ataaacccct aaaaaaccca agtccgacgc agaactgaaa ccgcaaagcc
     2761 cctccctcat aactgaaaag cggccccgcc ccggcccgaa gggccggaac agagtcgctt
     2821 ttaaccatga atgttgtaac tacattatca tcgctgtcag tcctctggct ggacgtatcg
     2881 agtacacgct cgtaagcggc cctcacggcc cgctaacgcg gagatacgcc ccgactgcgg
     2941 ataaaccctt gtcgcgctcc gaccgcgcac agaagctctg tcatggctaa aaacgggtat
     3001 ggcttggaag ctaccgtgtt ctgtcaagaa aaatcgcttg aactccgacg tacagccccc
     3061 taagtactgc cagcaagctg tcagcactaa gtccccgata cagcgcggcg tagccgcgct
     3121 aacggggtta aaagggctta cctatacttc atcatcgctg aaagcccgca tggcctcgca
     3181 gggcagggat gggataggtg aaacctatca atacgtaccg gcttacgccg ggcttcggcg
     3241 gtgttactcc tgtaccatat gtaactacat catgccgcct tacatgcgct acgcgcatat
     3301 gaagacaaat agcccacatc aaacggtttt tgggtcttca gtacgccata gcaccagtgc
     3361 acgagttttc tcatcagcgc accaatggca cacattttgg ccttacctct caggcataat
     3421 cgctcataca tcgctttcat caatgggtta aatctcagac cacacaacga agccagatac
     3481 agtttcgccc ggatttccgg cggaccaatt tttgacagtt tcggaccccc tctgaccgag
     3541 gtgccggaat atttttcaac gggaacgaca cctaaaaatg cagccgcctg ttcacgtatg
     3601 ggaaattgaa aaactaa
//
LOCUS       DADMHM010000281         3589 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.286, whole genome shotgun sequence.
ACCESSION   DADMHM010000281 DADMHM010000000
VERSION     DADMHM010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3589)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3589)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3589
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.286"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(625..2334)
                     /locus_tag="JN125_003997"
     CDS             complement(625..2334)
                     /locus_tag="JN125_003997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858142.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShET2/EspL2 family type III secretion system
                     effector toxin"
                     /protein_id="HAY8873574.1"
                     /translation="MPLNKTFSSSIFSTKNSLSTDMSVNRDNRTITSSIMRVSNSSEL
                     IQFKNKTAPYFSEKRNVKVNINGVAKDIYGRQIVCRHLASYWEMNFMETNGKVNYQLL
                     STPDAIAKNVCLEKTEDFSKSPAYIYFVENKKWGTVITNFFYNMKKNGDFVRTLSACT
                     LNHQMALGLKIKRVQESEKWVVQFFDPNRTVTHKRTVFTCDSHFELSQLSAKDFFDDF
                     YWKIYGLEQPGQVIFEDRHNSPLTNTVKLLPDELINSRVIYHAITKNLTEVLFILMEK
                     YKNGEISQSKLVNLLATRSSDGTPAFYIALQNGCSDIIQVYGKILNMCNLSQETILTL
                     LAAVGANNVPGLCMSFMNGHVDTIKAYGEIVFKTPLTSDKRLYLLAAKDSHDLPGLFF
                     ALQNGHADSIRMFGSLLNKKMLSSEQIKELLKVKHGLFMALQNGHTKAIMAYGDILKI
                     LPPHQEYIDELLWIKNPNGTSGLFMAFYNGHTETIRAFCNILKNYSFTTRRLVEMLSA
                     TNKDGIPGVFASVVNRDKETILEYCRIIKENNLEPDTIAEQFSKKMKKTFIEIINRFN
                     HFL"
     gene            complement(2766..3485)
                     /locus_tag="JN125_003998"
     CDS             complement(2766..3485)
                     /locus_tag="JN125_003998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector
                     phosphothreonine lyase"
                     /protein_id="HAY8873575.1"
                     /translation="MPIKKPCLKLNLDSLNVVRSEIPQMLSANERLKNNFNILYNQIR
                     QYPAYYFKVASNVPTYSDICQFFSVMYQGFQIVNHSGDVFIHACRENPQSKGDFVGDK
                     FHISIAREQVPLAFQILSGLLFSEDSPIDKWKITDMNRVSQQSRVGIGAQFTLYVKSD
                     QECSQYSALLLHKIRQFIMCLESNLLRSKIAPGEYPASDVRPEDWKYVSYRNELRSDR
                     DGSERQEQMLREEPFYRLMIE"
BASE COUNT         1069 a          719 c          639 g         1162 t
ORIGIN      
        1 ataagcttga tacaactggt ctggtatata cagtttcttt gagtgcggtt acgtccacag
       61 aggtaacggt aaaagtaacc ccttgtcggg accactccga ccgcgcacag aggcattttc
      121 atcgctgaca ggccgcattg cctcgcaggg ctggaggagg atcggtgata tccggacgac
      181 cgtaccggct tacgccgggc ttcggcggtt ttactcctct gccatgtgca acaacggagt
      241 gccgccttac atgccgctgg cgcggcatat cctggtaaca tttttgttga taccaccttc
      301 cggccttatc ctgaccagtg ggctttcctg gcatcgatga taccgatgaa cgcgcatgat
      361 attgagccga cgatattacg ggcaactgga aatactcacc ctctggatgt gacctttatc
      421 catgaagaag atttggccat accatggaaa cctgaacaat catcagttta cgcccatgta
      481 aacccctacg ggatatttga actcgatatg gaaacaaggt tgccaatcga ggtggttgcc
      541 tgaaagttgg cagttacccg gtcactacac cttgttggag tgaacatatc aaaaacaggt
      601 aattacacaa tttaaattac agtctcataa aaaatgatta aatctattta ttatttcaat
      661 aaacgttttt ttcatcttct ttgaaaattg ttctgctata gtatccggtt ccagattgtt
      721 ctcttttatt attctacaat actctaatat tgtttctttg tctctattta ctacagatgc
      781 aaatacacca ggaataccat ctttattagt tgcggacagc atttcgacca atcgtcttgt
      841 ggtaaaacta tagtttttta gaatattaca aaaggcacgt attgtttcgg tatggccatt
      901 ataaaatgcc ataaaaagtc ctgatgtacc gttgggattt tttatccata ataattcatc
      961 tatatattcc tggtgagggg ggagtatttt tagtatatct ccatacgcca taatggcctt
     1021 tgtgtgccca ttttgaagtg ccataaacaa cccatgcttt actttcaata attctttaat
     1081 ttgttcacta ctaagcattt tcttattaag cagacttccg aacatacgaa tactatctgc
     1141 atgtccattc tgcaatgcaa aaaataaccc aggtaaatca tggctgtctt tcgcagctaa
     1201 tagatataat ctcttatcgg aagttaacgg ggttttaaag actatttccc cataggcttt
     1261 tattgtgtct acatgtccgt tcataaaaga catgcataaa cccggcacat tgtttgcccc
     1321 taccgcagca agcaatgtaa gtattgtttc ttgactaaga ttgcacatat ttaatatctt
     1381 accatatact tgaataatgt ctgaacatcc gttttgaagt gctatataaa atgcaggagt
     1441 accatcagag cttctcgtgg ccagaaggtt caccagttta gattgagaaa tttcaccatt
     1501 tttgtatttt tccatcagta taaataatac ttctgtcaga ttctttgtta tcgcatgata
     1561 tataactctg gaattgatca attcatctgg taaaagtttc actgtgtttg ttagagggga
     1621 attatgccta tcttcaaata ttacctgccc gggttgctcc agaccataaa ttttccaata
     1681 aaaatcatca aaaaaatcct tagcggataa ttgactcagt tcgaaatggc tatcacaagt
     1741 aaatacagta cgtttatgag taacagttcg attaggatcg aaaaactgaa caacccattt
     1801 ttcactttct tgtacgcgct ttattttcaa ccctaacgcc atttggtggt ttaatgtgca
     1861 tgctgataat gttctgacaa agtctccatt ttttttcatg ttataaaaaa aattagtaat
     1921 aactgttccc cactttttat tttccacaaa ataaatataa gctggtgatt ttgaaaaatc
     1981 ttccgttttt tccaaacata cattttttgc aatagcatca ggggtgctaa gaagctgata
     2041 gtttaccttc ccatttgttt ccataaaatt catttcccaa taggaagcta ggtgacggca
     2101 aactatttgt cttccatata tatcttttgc cactccattt atatttacct tcacatttct
     2161 cttttctgaa aaataaggtg ctgttttatt cttaaactga attagttcac tggagtttga
     2221 gaccctcata atagaacttg ttattgttct attatctctg ttaacagaca tatctgttga
     2281 taacgaattt tttgttgaaa atatactaga tgaaaatgtt ttatttaacg gcatagaaga
     2341 caaccataga gatgttataa tactattaga ttgcagttac taatagtaaa agcctcctta
     2401 caaggaggta gcttattcag aatgctccta taagatagcg agctcgtcaa cgatacagat
     2461 gatctgatta tatagtgcaa aaggagaaca ggaaaatagg cactggaaaa gatgaaggcc
     2521 tgatgggagc attaactaat gcaaaatccg acaggttaat atcccgaaaa gcaatcaaac
     2581 gactcaaaca ggagatgcac gctgaagtgg tggacaactg ttcggatttc agatgagtag
     2641 ctcagcagtt tatgagccga atgctctgtc acggtcagga atcaggctgc atacgctgtg
     2701 ccaaatctaa tcgtagttat tctaaccagt tttcaagcta caaggtggtg tagctggcat
     2761 cttctctact ctatcatcaa acgataaaat ggttcctctc gtaacatttg ctcttgcctt
     2821 tcacttccat ctcgatcgct tcgtagttca ttacgatagc tgacatattt ccagtcttca
     2881 ggtctaacat ctgacgccgg atactccccg ggagcgattt tgcttcttaa tagattagac
     2941 tcgagacaca ttataaattg tcgtatttta tgaagtaata aagcactata ttgcgagcat
     3001 tcctgatctg attttacata tagcgtaaac tgagctccta tccccacacg agattgctga
     3061 gaaactcgat tcatatcagt tatcttccat ttatctatag gactgtcctc tgaaaataat
     3121 aaaccagaca aaatttggaa tgccagagga acttgctccc tagctatact aatatgaaac
     3181 ttgtccccaa caaaatcccc cttactctga ggattttcac gacatgcatg aataaacaca
     3241 tctccactat ggttcacaat ctggaatcct tggtacatga cagaaaaaaa ttgacatata
     3301 tcagagtaag ttggcacgtt cgatgctact ttgaaatagt acgctgggta ttgccgtatt
     3361 tggttgtaca atatattgaa gttatttttc aatctttcat tcgcagaaag catctgcggt
     3421 atttcagacc tcacaacatt caaagaatct aaatttagtt ttagacaggg cttttttatg
     3481 ggcatagaaa acgtcctcta taaaatagat atattatctt atattgattg tttatcatct
     3541 tttataaaac gatacattat atgtaatgta tgtaagcgta agggtcttc
//
LOCUS       DADMHM010000282         3566 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.287, whole genome shotgun sequence.
ACCESSION   DADMHM010000282 DADMHM010000000
VERSION     DADMHM010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3566)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3566)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3566
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.287"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            231..542
                     /locus_tag="JN125_003999"
     CDS             231..542
                     /locus_tag="JN125_003999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000483533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HAY8873576.1"
                     /translation="MFNVITHPAALDELLELPDNLRGRMTRLIERLEQEGNKMKMPHS
                     RVIGGGLFELRVGDKNIARTLYAYATGNEIYLLHAFVKKTQKTPTKAIEIARMRLKEM
                     N"
     gene            542..829
                     /locus_tag="JN125_004000"
     CDS             542..829
                     /locus_tag="JN125_004000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000865085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HAY8873577.1"
                     /translation="MKVKGVPFSQVKQKLLSTPEAVKGYEDADKELEMVEMLYEMREK
                     AGLTKSALAERMGLRPSAISRLESNPLGASMKTLTKYAHACGATIDIHAVY"
     gene            complement(1367..2554)
                     /locus_tag="JN125_004001"
     CDS             complement(1367..2554)
                     /locus_tag="JN125_004001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013747467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
                     /protein_id="HAY8873578.1"
                     /translation="MLPRFADIFQQGNRWLNWLEKQPEGAVRPVVIESVTKIMACGTT
                     LMGYTQWCCSSPDCCHTKKVCFRCKSRSCPHCGVKAGAQWIQYLLSLVPDCPWQHIVF
                     TLPCQYWSLVFHNRWLLAEMSRIAADVILEICHQADVEPRIFTVIHTWGRDQQWHPHI
                     HLSTTAGGVTSGHTWKNLHFYARKVMSMWRYRITRLLSRKYPDLVMPDALAAEGSSKR
                     EWNRFLDTHYRRGWNVNVSRVMDNATHVAVYFGSYLKKPPVPVSRLEHYAGQDEIGLR
                     YNSHRTKREEYLLMSGDEFMERFSWHVADKGFRMVRYYGFLSPAKRRLLEEVVYIITE
                     TVRKTAMQITWRGMYQRLLKVDPLKCVLCGSQMRFTGLKRGYRLAEQVLMHEPLARMR
                     WCG"
     gene            complement(2554..2919)
                     /locus_tag="JN125_004002"
     CDS             complement(2554..2919)
                     /locus_tag="JN125_004002"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873579.1"
                     /translation="MARSAKPRKRKPAFQRSKLPRYVVKLHEDDFFDEEDAEVLRFDS
                     FDDAVECCADLNIPFFVDAGNKKLVFWFVRVDDEGYPEIARCTEREFATILSGISAGG
                     MYCPECGTVHWPDGVAPPF"
     gene            2938..3333
                     /locus_tag="JN125_004003"
     CDS             2938..3333
                     /locus_tag="JN125_004003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858230.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY8873580.1"
                     /translation="MTLPVFITVIADHDKPQPSGCLLELQLNKGEYRHKLPRWIFFAN
                     QGEFTTGDYEEIMNKASALSLVSNAILYWNTSRISNIVEGLRENGEVIDDDVLAHISL
                     LPYKHVLPNGTYFVDGEPYGTEPTERAKP"
     gene            3363..3446
                     /locus_tag="JN125_004004"
                     /pseudo
     CDS             3363..3446
                     /locus_tag="JN125_004004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_052676.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
     gene            3446..3541
                     /locus_tag="JN125_004005"
                     /pseudo
     CDS             3446..3541
                     /locus_tag="JN125_004005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858351.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
BASE COUNT          936 a          924 c          842 g          864 t
ORIGIN      
        1 aggtgaaatc tgtcaatcag taccggctta cgccgggctt cggcggtttt actcctgtgc
       61 catatgcaac aacggagtgc cgccttccat gccgctaacg tggcatcaaa aaatccctct
      121 tctccagttg cccccctccg aactcagagt gtattttcat ttattgatga aatttactgt
      181 ttgcgcaatt ttcctgtttt agtgtatttt gtcattctgg aggctataat atgtttaatg
      241 tgattactca cccggccgca ctggatgaac ttctagaatt accagacaat ctgcgtggtc
      301 gtatgaccag actgattgaa cggctggaac aggaaggtaa caaaatgaaa atgcctcaca
      361 gccgtgtaat tggcggaggg ctttttgaac tgagagtcgg ggataaaaat atcgcaagga
      421 cactgtacgc ttatgcaacg ggtaacgaaa tctatctgct gcatgcattt gtgaaaaaaa
      481 cgcaaaagac accaacgaaa gctattgaaa ttgccaggat gcgtctgaag gagatgaact
      541 gatgaaagta aaaggtgttc cattcagcca ggtaaagcaa aaactactca gtactccaga
      601 agctgtcaaa gggtatgagg atgctgacaa agaactggag atggtggaaa tgttatacga
      661 aatgagagaa aaagcgggat taacaaagtc agcactggcc gaacgaatgg ggttacgccc
      721 gtcagccatc agtcgcctgg aaagtaaccc tttaggggcc agcatgaaaa ctttgacaaa
      781 atatgctcat gcctgtggcg caaccatcga tattcacgct gtctattgag gggtccgctt
      841 ggaattcgga aaataaacca cgttaagact attttttaga taaatgactt tcaggaatcg
      901 ccaagatggc gggataacag cggttttggt gtcctaaatc gtacaattct gtacatccac
      961 gcaagggaat gtacggaagt aagccagacg gttatcggac ggtcagaaca tttcgtacag
     1021 cctttacgtt cagtgagtta gctggcctgg acgtaaccac tcgttagctc aattctctta
     1081 gcgtgggaaa atttccgaat tccaagcgga cccctttatc cttgccccgc tgaatgagga
     1141 aacgctgttc cgggggatta tgctgaacgt cttccgttca tcgataggaa ttaaaacccc
     1201 aaaaagatta aaaaaacacc acaaaacgga tgtttcttca acaccacttt tgctcatatg
     1261 aacggaaccg acgattaaac tggatggctc tgattgattc agggtatgaa tggcggtttt
     1321 ttgctccgtt tccctcaaaa tggacgctac ttaccctctg cggctctcag ccgcaccacc
     1381 gcatccgggc cagcggctca tgcatcagga cctgctctgc cagacggtag ccccgcttca
     1441 gccccgtaaa acgcatctga ctcccgcaca gcacgcactt cagcgggtca accttcagta
     1501 acctctgata catccctctc caggtgattt gcatcgccgt ttttctcact gtctccgtta
     1561 tgatgtacac cacttcttcc agtaaccgcc gtttcgccgg actcagaaaa ccgtagtacc
     1621 tcaccatacg gaacccctta tccgccacat gccaggagaa cctttccatg aactcatctc
     1681 cactcatcaa caggtattct tcccgttttg ttcggtgact gttgtaacgc agtccgattt
     1741 catcctgacc ggcataatgc tccagacgac tcaccggcac cggtggcttt ttcaggtaag
     1801 agccaaagta caccgccaca tgggtggcat tatccatcac ccgggatacg ttgacattcc
     1861 agccacggcg gtaatgcgtg tccaggaagc gattccattc ccgtttactg cttccttctg
     1921 ctgccagcgc atccggcatc accaggtcag ggtatttccg tgacagtaac cgtgttatcc
     1981 ggtagcgcca catgctcatc accttacggg cgtaaaaatg aagatttttc caggtgtggc
     2041 ccgacgtcac accaccggca gttgtcgata aatggatatg cggatgccac tgctggtcac
     2101 gcccccatgt gtggatcacc gtgaatatcc tcggctccac atctgcctga tggcagattt
     2161 ccagtatcac atccgctgca atgcggctca tctctgccag caaccaccgg ttgtggaaca
     2221 ccagggacca gtactggcag ggtaacgtga acacaatatg ctgccatggg cagtcgggga
     2281 ccaggctcag cagatactgt atccactgtg cgccagcctt caccccgcag tgcgggcagg
     2341 agcggctttt acaccggaag cagacctttt ttgtatggca acagtccggt gatgaacagc
     2401 accactgtgt ataccccatc agtgtggtcc cgcacgccat gattttggtc accgactcaa
     2461 tcaccaccgg acgtactgcc ccttccggct gcttctccag ccagttaagc cagcggtttc
     2521 cctgctgaaa gatatcggca aaacggggaa gcatcagaag ggcggggcga ctccgtccgg
     2581 ccagtgaacc gtgccacact ccgggcagta cataccgccg gcgctgatac cggaaagaat
     2641 ggtcgcaaat tcccgctccg tgcagcgggc gatttccgga tacccttcgt catcaacacg
     2701 tacaaaccag aagaccagct ttttgtttcc cgcatccaca aagaacggaa tattcaggtc
     2761 tgcgcagcat tcaacggcat cgtcaaaact atcaaagcgc agaacttctg cgtcttcttc
     2821 gtcaaaaaaa tcatcttcgt gaagcttcac gacatagcgg ggaagtttgc ttctttgaaa
     2881 ggcgggttta cgtttacggg gtttagctga acgggccata taaccacctg aaagacaatg
     2941 acattgcctg tttttataac ggtaattgca gaccatgaca agccgcagcc gtcaggctgc
     3001 ctactcgagc ttcagctcaa taaaggcgag tatcgacata aattaccccg atggatcttt
     3061 tttgcaaatc agggtgaatt cacgaccggt gattacgaag aaatcatgaa taaggccagc
     3121 gccctgagtc tggtatcgaa tgcaatcctg tactggaaca catcaagaat aagcaatatt
     3181 gttgaagggt tacgtgaaaa tggtgaggtt attgatgatg acgtattagc ccatatatca
     3241 ttactgccct ataaacacgt attacctaat ggtacttatt ttgttgatgg agaaccttac
     3301 ggtactgagc ctaccgaaag agcaaaaccg taagtttctg ttcaaatgct cccgctggtc
     3361 catccggaca gattatcgac catcaggctg tacaggcctg ggcggacagc ctcagtactg
     3421 acaatccgtt accggtgcca cgctgatgga acagaagtgg accagtaagg cgctttctga
     3481 tttggcgcgg ttatatgatt ttctggtgct ggccagtaaa cctgctgccg ccagaatggt
     3541 acacgtatag gaaattgaaa aaccag
//
LOCUS       DADMHM010000283         3507 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.288, whole genome shotgun sequence.
ACCESSION   DADMHM010000283 DADMHM010000000
VERSION     DADMHM010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3507)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3507)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3507
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.288"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(265..1212)
                     /gene="icsP"
                     /locus_tag="JN125_004006"
     CDS             complement(265..1212)
                     /gene="icsP"
                     /locus_tag="JN125_004006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858404.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="omptin family outer membrane protease IcsP"
                     /protein_id="HAY8873581.1"
                     /translation="MKLKFLVLALCVPAIFTTHATTNYPLFIPDNISTDISLGSLSGK
                     TKERVYHPKEGGRKISQLDWKYSNATIVRGGIDWKLIPKVSFGVSGWTTLGNQKASMV
                     DKDWNNSNTPQVWTDQSWHPNTHLRDANEFELNLKGWLLNNLDYRLGLIAGYQESRYS
                     FNAMGGSYIYSENGGNRNKKGAHPSGERTIGYKQLFKIPYIGLTANYRHENFEFGAEL
                     KYSGWVRSSDTDKHYQTETIFKDEIKNQNYCSVAANIGYYVTPSAKFYIEGSRNYISN
                     KKGDTSLYEQSTNISGTIKNSASIEYIGFLTSAGIKYIF"
     gene            complement(2593..2745)
                     /locus_tag="JN125_004007"
                     /pseudo
     CDS             complement(2593..2745)
                     /locus_tag="JN125_004007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            2801..3493
                     /gene="ospZ"
                     /locus_tag="JN125_004008"
     CDS             2801..3493
                     /gene="ospZ"
                     /locus_tag="JN125_004008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000625270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector cysteine
                     methyltransferase OspZ"
                     /protein_id="HAY8873582.1"
                     /translation="MISPIKNIKNVFPINTANTEYIVRNIYPRVEHGYFNESPNIYDK
                     KYISGITRSMAQLKIEEFINEKSRRLNYMKTMYSPCPEDFQPISRDEASIPEGSWLTV
                     ISGKRPMGQFSVDSLYHPDLHALCELPEISCKIFPKENSDFLYIIVVFRNDSPQGELR
                     ANRFIELYDIKREIMQVLRDESPELKSIKSEIIIAREMGELFSYASEEIDSYIKQMND
                     RLSQIKARMSVT"
BASE COUNT         1101 a          656 c          633 g         1117 t
ORIGIN      
        1 agcggttctt atttctccgg tctcagggtc ggtaatgcca acagtaagtc cacagtaatc
       61 aacgaagagt tttttgaacc gccccggaaa tcctggagac taaacgccct gagaaagagg
      121 taaacagaat gactaaaaat acacgttttt cccccgaagt ccgtcaacgg gcagttcgta
      181 tggttctgga aagtcagggc gaatatgact cacaatgggt ggcaattttt agccatgaaa
      241 acgtaatcaa ctcggtgaac caattcaaaa aatatacttt atacctgcgg aagtgagaaa
      301 accaatatat tcaatacttg cactattttt aatggtgcca gatatattgg tactttgctc
      361 ataaagagat gtatcacctt ttttattaga aatgtaattt ctggagcctt ctatataaaa
      421 ttttgcactg ggggtgacat agtatccaat attcgcagca acagagcagt aattttggtt
      481 ttttatttca tctttaaaaa ttgtctcagt ctgatagtgt ttatctgtat cagatgaacg
      541 aacccaacca ctatatttca gttctgctcc aaactcaaaa ttctcatggc ggtaattagc
      601 agttaatcca atataaggta ttttgaagag ctgtttgtaa cctattgttc tttcaccact
      661 aggatgtgcc ccttttttat tcctgttccc cccgttttca ctataaatat aactccctcc
      721 cattgcatta aaactgtaac gactctcttg gtaacctgct attagtccaa gtcgataatc
      781 caaattattt aataaccaac ctttaagatt cagctcgaat tcgttagcat cacggagatg
      841 cgtattggga tgccagctct ggtcggtcca tacctgaggg gtattggaat tgttccagtc
      901 tttatcaacc atgcttgctt tctggttacc taaagtagtc caaccggaaa ctccgaaaga
      961 cacttttgga attagcttcc aatcgatgcc acctctaaca atagtcgcat tactgtattt
     1021 ccagtccagt tgactaattt ttctcccccc ttccttggga tgataaacgc gttcttttgt
     1081 tttgccactc agagatccta gactaatatc cgtactgatg ttatccggta tgaaaagtgg
     1141 atagttagtg gtagcatgtg tagtaaagat cgcaggtaca caaagtgcaa gtacaaggaa
     1201 ttttaatttc atcgagaact ctactttttt ggttgaaatg tccatgatct tcttacttta
     1261 taagataaac gtcaatgcca agcattattt taattaaata tttgtttatg ttaccaagaa
     1321 catatctttt attataatat ttattgaact tttgtaaaaa taaaaaaata cctcattgtg
     1381 cgaataaagt aacgggggcc atagatttct ctacctacct tttggtgttc atacctgagg
     1441 ctgatagttt caggattccg cgacaattct actcaccttc ttgttctctc gccaatatga
     1501 aatcaatcag aaaagcgttc cataagaaca acgataagac aataaattgt catcacggct
     1561 gcaatagcca acgtgccttt cagtaccaac atgacaacct cctgtatttg acgtaacgtg
     1621 tgctgataaa tatgtatttg tatctcaact gactcaatac aacacttaag tatagttttt
     1681 cagattttgt ttttcccgtg aaatattatg gaaatggcag aagcaataca ttgaattccg
     1741 attcgagtga atacggctag cgggcacctc actttagcac tgaagccatc aacttttatt
     1801 tgacttattt caatggaaag ctttctcact atcagtacag gtaattccca tccttttaaa
     1861 gtcgagagtc agactgcgac taatacagtt aaagtgacca aactcagtta tcctctacac
     1921 attttacctc atgtttactt ggacaattca ttggtgcttt tataaaagaa taaatattct
     1981 actaatttaa tgcatcacct aaaatagtat tttttataat agaactgtat ctatagtata
     2041 ttattaaagc ttaattattt attatgcttt aatgtggttg tccgattaag gactaatcct
     2101 tgaaaacgcc gtatagggcg ggagttcact ctattgcgat aacgtaaccg tacaatattg
     2161 tgcgtttccc aaattgacca ctactgaact attcagggat ttaaatgcaa taaaatggtt
     2221 ggttgaaggt cgtggtgatg atgttagtcc ttttgagaat attccagtgc cagatcttac
     2281 ttataataaa gaggcttggc agtttggata agctattgtc cttattccac taatacaaac
     2341 tttttgtaaa gtatattaaa tatacttcat ttcatactga aatccccgga agtattcaat
     2401 caaacaatta caccataaaa ggaagaggga gccccaatta agttatcaag catgtttatg
     2461 atacctgcag ggtataaatt ttctggctgc aagcagacac atataaaacg tctttattga
     2521 tcctacccac ataatatgga cgcagtcgta agtgaggctc tgtgagccta cccacgtaat
     2581 atggacacag gcctaagcga ggttctggtt ttcaaattgt tccggactga ggccgccaca
     2641 ccaacggtgc cgtcgccagc gattgtaatc gcactcgata taattaaaca ctgttgcccg
     2701 cactatttcc cgatagataa agtgttctcc gtggagacat tccacttagg aacaattata
     2761 ttgttcatgg taatgtttat atttgagtat agagattaaa atgattagtc ccatcaagaa
     2821 tattaagaac gtatttccaa taaatactgc aaatactgaa tatatagtga gaaatattta
     2881 tcctagagtt gaacatggtt actttaatga atcaccaaac atatatgaca agaagtatat
     2941 ctctggtata accagaagta tggcacaatt aaaaatagag gagtttatta atgagaaatc
     3001 cagacgactt aattatatga agacaatgta ttctccatgt ccggaagatt ttcagcctat
     3061 ttccagagac gaagccagta taccggaagg aagctggttg acagttatat ctggaaaacg
     3121 tcctatgggg caattttctg tggatagttt gtaccatcct gacttacatg cattatgtga
     3181 gctcccagag attagttgta agatcttccc taaagaaaat agtgattttt tgtatataat
     3241 tgttgtattc agaaatgatt ctccccaagg agaactacgg gcaaatcggt ttatagaact
     3301 atatgatata aaaagagaga ttatgcaagt gttaagagat gagtcgccag agttaaagtc
     3361 tattaaatct gagattatta ttgctcgtga aatgggagaa ctttttagtt atgcatcaga
     3421 ggaaatagat agctacataa aacaaatgaa tgacaggctt tctcaaatca aggctcgaat
     3481 gtctgttact taatgtatat taattgt
//
LOCUS       DADMHM010000284         3332 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.289, whole genome shotgun sequence.
ACCESSION   DADMHM010000284 DADMHM010000000
VERSION     DADMHM010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3332)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3332)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3332
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.289"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..216)
                     /locus_tag="JN125_004009"
     CDS             complement(<1..216)
                     /locus_tag="JN125_004009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_588471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873583.1"
                     /translation="MKPTTLLLIFTFFAMPGIVYAESPFSSLQSAKEKTTVLQDLRKI
                     CTPQASLSDEAWEKLMLSDENNKQHIRE"
     gene            438..1256
                     /gene="nlpA"
                     /locus_tag="JN125_004010"
     CDS             438..1256
                     /gene="nlpA"
                     /locus_tag="JN125_004010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein NlpA"
                     /protein_id="HAY8873584.1"
                     /translation="MKLTTHHLRTGAALLLAGILLAGCDQSSSDAKHIKVGVINGAEQ
                     DVAEVAKKVAKEKYGLDVELVGFSGSLLPNDATNHGELDANVFQHRPFLEQDNQAHGY
                     KQVAVGNTFVFPMAGYSKKITTVAQIKEGATVAIPNDPTNLGRALLLLQKEKLITLKE
                     GKGLLHTALDITDNPRHLQIMELEGAQLPRVLDDPKVDVAIISTTYIQQTGLSPVHDS
                     VFIEDKNSPYVNILVAREDNKNAENVKEFLQSYQSPEVAKAAETIFNGGAVPGW"
     gene            complement(1283..2182)
                     /locus_tag="JN125_004011"
     CDS             complement(1283..2182)
                     /locus_tag="JN125_004011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005030206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HAY8873585.1"
                     /translation="MGSTRKGMLNVLIAAVLWGSSGVCAQYIMEQSQMSSQFLTMTRL
                     IFAGLILLTLSFVHGDKIFSIINNHKDAISLLIFSVVGALTVQLTFLLTIEKSNAATA
                     TVLQFLSPTIIVAWFSLVRKSRPGILVFCAILTSLVGTFLLVTHGNPTSLSLSPAALF
                     WGIASAFAAAFYTTYPSTLIARYGTLPVVGWSMLIGGLILLPFYARQGTNFVVNGSLI
                     LAFFYLVVIGTSLTFSLYLKGAQLIGGPKASILSCAEPLSSALLSLLLLGITFTLPDW
                     LGTLLILSSVILISMDSRRRPEK"
     gene            complement(2293..>3332)
                     /locus_tag="JN125_004012"
     CDS             complement(2293..>3332)
                     /locus_tag="JN125_004012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8873586.1"
                     /translation="IMVGFFFTGSAIMGILVSQFLARHSDKQGDRKLLILLCCLFGVL
                     ACTLFAWNRNYFILLSTGVLLSSFASTANPQMFALAREHADRTGRETVMFSTFLRAQI
                     SLAWVIGPPLAYELTMRFSFKVMYLTAAIAFVVCGLIVWLFLPSIQRNIPVVTQPVEI
                     LPSTHRKRDTRLLFVVCSMMWAANNLYMINMPLFIIDELHLTDKLAGEMIGIAAGLEI
                     PMMLIAGYYMKRIGKRLLMLIAIVSGMCFYASVLMATTPAVELELQILNAIFLGILCG
                     IGMLYFQDLMPEKIGSATTLYANTSRVGWIIAGSVDGIMVEIWSYHALFWLAIGMLGI
                     AMICLLFIKDI"
BASE COUNT          996 a          764 c          773 g          799 t
ORIGIN      
        1 ctcgcgtata tgttgtttat tgttttcatc tgacaacatt aacttttccc acgcttcatc
       61 tgataatgac gcctgtggcg tgcaaatttt acgtaaatct tgtaataccg tggttttctc
      121 ttttgcggac tgcagtgagc taaaaggcga ctcggcgtat acgatgcctg gcatagcgaa
      181 aaaagtgaaa ataagcagta gtgtcgttgg tttcatggat tcaacctttt acaaatgtgt
      241 atcgaatgaa gcataagtgt agtttgcttt catcgctctc atcatgctgt acgaaacgcg
      301 cttgcgtggt cagtaagaag tgccagactt tatattccac ttttattcct ttttattctt
      361 atcgatagcg tttcgttttt taaaccgcag cgaccttacc gctatagtca ggtaatcatt
      421 aataaaagga taaaaaaatg aaactgacaa cacatcatct acggacaggg gccgcattat
      481 tgctggccgg aattctgctg gcaggttgcg accagagtag cagcgatgca aaacacatta
      541 aagttggcgt tataaatggc gcagaacaag atgtcgcgga agtcgctaaa aaggtggcaa
      601 aagagaaata tggcctcgat gttgaactgg taggatttag cggttcgttg ctaccgaacg
      661 atgcgacaaa tcatggcgaa cttgatgcga atgtcttcca gcatcgaccc tttcttgaac
      721 aagataatca ggcgcatggt tataaacagg tagcggtggg aaatacgttt gtcttcccta
      781 tggcgggtta ttccaaaaaa atcacaaccg tggcgcaaat aaaagaaggc gcgacagtgg
      841 cgatccccaa cgacccgacc aaccttggtc gcgcactttt actgttgcaa aaagagaagc
      901 taattactct gaaagaggga aaagggttat tacataccgc gctggatata accgataatc
      961 ctcgtcattt gcagattatg gaactcgagg gggcgcagct tccgcgcgta ctggatgatc
     1021 ccaaagttga tgtagcgatt atcagcacca cttacattca gcagacaggg ctttctccgg
     1081 tgcacgacag cgtatttatt gaagataaga attcgccgta tgtgaatatt ttggtggcac
     1141 gggaagataa taagaatgca gaaaacgtga aggaatttct gcaatcttat caatcacccg
     1201 aagtcgctaa agcggcagaa accattttta acggtggcgc ggtgcctggc tggtaattct
     1261 cactcatgcc gcgccggacg atttattttt ctggccggcg acgggaatcc attgaaatca
     1321 aaatcaccga tgacagaatc agcagcgttc ccagccagtc cggtaatgtg aacgtgatcc
     1381 ccagcaacag caaagagagt agcgcgctac ttaatggttc tgcacagctc aaaatgctgg
     1441 cttttggacc gccaattaat tgtgctcctt tcaggtacag actaaatgtc agggacgtac
     1501 caatgaccac caaataaaaa aacgccagaa tcaaactgcc gttaacgaca aagtttgttc
     1561 cttgtctggc ataaaaaggc aacagaatca gaccgccaat cagcatactc cagccgacga
     1621 ctggtaacgt gccatagcgg gcaattagcg ttgagggata ggtggtatag aatgcagcag
     1681 caaatgccga ggcaatgccc cagaacaacg cggcaggaga gagcgataat gacgtcggat
     1741 taccgtgtgt caccaataaa aaagtcccga ccagcgatgt caaaatagcg cagaaaacca
     1801 gaatgcccgg gcgcgattta cgcaccagtg agaaccaggc gacgataatc gtcggtgaga
     1861 ggaattgcag caccgttgcc gtggctgcgt tcgatttttc gatggttagc aaaaaagtga
     1921 gctgtacagt tagcgcgcca accacggaaa aaatcagcag gctaatggca tctttatgat
     1981 tgttaataat agaaaagatt ttatcgccat gaacaaatga cagcgtcagt agaatcaaac
     2041 cggcgaatat caaacgcgtc atagtcaaaa actgcgacga catctggctt tgctccatga
     2101 tgtattgcgc gcagacccct gaacttcccc acaacacggc ggcaatcaga acgttcagca
     2161 tcccctttct ggtggaaccc atttttccct ctgcatactg ttttgtcgtt tatgtatgca
     2221 ggcatgatag caaaaatggc gaggatggct ctgtttgcgc cacgccgatt tttcttagcc
     2281 cagactggtg agctaaatat ctttaataaa cagcaggcaa atcatcgcaa tacccaacat
     2341 ccctatcgcc agccagaaca acgcatggta gctccagatt tcaaccataa ttccgtcaac
     2401 agagccggcg ataatccagc cgacgcgtga agtatttgca tataacgttg tcgcagagcc
     2461 tattttttca ggcatcaagt cctgaaaata aagcatgccg ataccacaga gaataccaag
     2521 gaagatggca tttagaattt gcaattccag ctcaaccgcc ggagtcgtcg ccatgagtac
     2581 gctggcgtaa aaacacatac cactcacgat agcaatgagc attaatagtc gcttgccaat
     2641 acgtttcatg taatagcctg cgattaacat catcggaatt tccagaccgg cagcgatacc
     2701 aatcatttct ccagccagtt tatcggttag atgcagttca tcaataataa atagcggcat
     2761 atttatcatg tagagattat tcgccgccca catcattgaa cagaccacaa aaagtagccg
     2821 cgtatcccgc ttcctatggg tggagggtaa aatttctacg ggttgggtaa cgacaggaat
     2881 atttctttgt attgatggca aaaacaacca gactatcagc ccgcaaacaa caaatgcgat
     2941 ggcagcggtg agatacatca ctttaaaact aaacctcatt gtcagttcat aagcgagcgg
     3001 tggcccgata acccaggcaa gcgagatctg agcacgtaaa aatgtactga acatgaccgt
     3061 ctcacggcct gttctgtcgg cgtgttcacg ggcgagggcg aacatttgcg ggtttgcggt
     3121 agaagcaaaa ctactcagaa gtacgcccgt agagaggaga atgaagtagt tgcgattcca
     3181 cgcaaaaagc gtgcaggcca gcactccaaa taagcaacat agcagaatca gtaatttacg
     3241 gtcgccttgt ttatcggagt gccttgccag aaattgactg accagaattc ccataatagc
     3301 gctaccggtg aagaaaaaac ctaccattat ag
//
LOCUS       DADMHM010000285         3292 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.290, whole genome shotgun sequence.
ACCESSION   DADMHM010000285 DADMHM010000000
VERSION     DADMHM010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3292)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3292)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3292
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.290"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..77)
                     /locus_tag="JN125_004013"
     CDS             complement(<1..77)
                     /locus_tag="JN125_004013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HAY8873587.1"
                     /translation="MSKVGINGFGRIGRLVLRRLLEVKS"
     gene            266..796
                     /gene="cybB"
                     /locus_tag="JN125_004014"
     CDS             266..796
                     /gene="cybB"
                     /locus_tag="JN125_004014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415935.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome b561"
                     /protein_id="HAY8873588.1"
                     /translation="MENKYSRLQISIHWLVFLLVIAAYCAMEFRGFFPRSDRPLINMI
                     HVSCGISILVLMVVRLLLRLKYPTPPIIPKPKPMMTGLAHLGHLVIYLLFIALPVIGL
                     VMMYNRGNPWFAFGLTMPYASEANFERVDSLKSWHETLANLGYFVIGLHAAAALAHHY
                     FWKDNTLLRMMPRKRS"
     gene            1041..1214
                     /locus_tag="JN125_004015"
     CDS             1041..1214
                     /locus_tag="JN125_004015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873589.1"
                     /translation="MKKLALILFMGTLVSFYADAGRKPCSGSKGGISHCTAGGKFVCN
                     DGSISASKKTCTN"
     gene            complement(1286..1435)
                     /gene="hokB"
                     /locus_tag="JN125_004016"
     CDS             complement(1286..1435)
                     /gene="hokB"
                     /locus_tag="JN125_004016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_025301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin HokB"
                     /protein_id="HAY8873590.1"
                     /translation="MKHNPLVVCLLIICITILTFTLLTRQTLYELRFRDGDKEVAALM
                     ACTSR"
     gene            1834..>3292
                     /gene="trg"
                     /locus_tag="JN125_004017"
     CDS             1834..>3292
                     /gene="trg"
                     /locus_tag="JN125_004017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein Trg"
                     /protein_id="HAY8873591.1"
                     /translation="MNTTLSQRLGFLHHIRLVPLFACILGGILVLFALSSALAGYFLW
                     QADRDQRDVTAEIEIRTGLANSSDFLRSARINMIQAGAASRIAEMEAMKRNIAQAESE
                     IKQSQQGYRAYQNRPVKTPADEALDTELNQRFQAYITGMQPMLKYAKNGMFEAIINHE
                     SEQIRPLDNAYTDILNKAVKIRSTRANQLAHQRTRLGGMFMIGAFVLALVMTQITFMV
                     LRRIVIRPLQHAAQRIEKIASGDLTMNDESAGRNEIGRLSRHLQQMQHSLGMTVGTVR
                     QGAEEIYRGTSEISAGNADLSSRTEEQAAAIEQTAASMEQLTATVKQNADNAHHASKL
                     AQEASIKASDGGQTVSGVVKTMGAISTSSKKISEITAVINSIAFQTNILALNAAVEAA
                     RAGEQGRGFAVVASEVRTLASRSAQAAKEIEGLISESVRLIDLGSDEVATAGKTMSTI
                     VDAVASVTHIMQEIAAASDEQSRGITQVSQAISEMD"
BASE COUNT          874 a          736 c          827 g          855 t
ORIGIN      
        1 ttgcttttga cttcaagtaa tcgacgcaac accagtcgac cgatacgacc aaaaccgtta
       61 ataccaacct tactcatggt tttctcctgt caggaacgtt cggatgaaaa ttgatccttt
      121 ccaggcttag cccaggattg tgggatgggc aatctccatt cttacagtga aacgtaacgt
      181 actgaaaacg ggtgaacaat atttaatgaa attttgagaa aagcccgtta tgttaacgga
      241 aaattatgtt aaagcaggaa atgttatgga aaataaatac tcaaggttac aaatcagcat
      301 tcactggctg gtctttttgc tggttatcgc agcgtattgc gcaatggagt ttcggggttt
      361 cttcccacgt agcgatcggc cactcatcaa catgattcat gtttcctgcg gcatctcaat
      421 tctcgtgctg atggtcgttc gtcttttgtt aaggctgaaa tacccaaccc cgccgattat
      481 acctaagcca aaaccgatga tgacgggact ggcgcatttg ggacatttgg tgatttatct
      541 cctgtttatt gcgctgccag tgattggttt ggtgatgatg tataaccggg gcaacccgtg
      601 gtttgcgttt ggtttgacga tgccttacgc ttcagaggcc aatttcgaac gggttgatag
      661 cttaaagtcg tggcatgaaa cgctggcgaa tctgggatat tttgtcatcg ggttgcacgc
      721 tgcggctgca ctggcacacc actatttctg gaaggacaac acacttctac gcatgatgcc
      781 gcgtaaacgt tcctgaagga tatttaaaga aaacgcctgt actaaaaccg acccgtggta
      841 caggcgaaga atacgggtct acatcggaag cgcctattat atttatttgt atgacaaata
      901 aaaccataat ccttgcccat acgtccatct ggcttatttt taatcaattc acccgatctt
      961 tgatctcatc tacggtatca aaataaacca gcgtataacg ttcaaatcga acataagatt
     1021 cgataaacca tggaggttat atgaaaaaac tggcacttat tttgtttatg ggaacgcttg
     1081 tttcctttta tgccgatgcc gggcgcaaac cctgttctgg ttcgaaaggg gggatctcac
     1141 actgtacggc aggcggcaaa tttgtctgta atgatggttc tattagtgcc tcgaaaaaaa
     1201 catgcactaa ctgaagtgta aaaggggtgc catgagaaaa tgaatctgct agtcagatgc
     1261 gcggggaaaa tccccgcgct tgcccttacc tggacgtgca ggccatgagc gcagcaacct
     1321 ccttatcacc gtcccggaac cgcagttcgt agagcgtttg tcgggtcagg agtgtgaatg
     1381 tcagaatcgt aatgcagata atgagcagac acaccaccag agggttgtgc ttcatagcct
     1441 ttctccttgc cggatggcgg gtaagaggct aagatctgaa ttgctaggtt cattcgttgg
     1501 cctcggttga tagaaatatc ggtcggggcc ttcgtctttc tgattcccgg ttagcctgaa
     1561 aacagaaagt ctcaggcacc cgcaggcatc ctatgaggtt tccttaggga cgaaaataat
     1621 cacttcacga aattgcgtgc tgttttccag aatttttcgt cattcggatt agccagttta
     1681 gccattcgtt actctcttca ttccaatagc attaattttc tctgcaataa ttgttgtaaa
     1741 aatgtgacgc aaagaggttt ttggtcataa gtaattaccg tcaagtgccg atgactttct
     1801 atcaggagta aacctggacg agagacaacg gtaatgaata caactctctc acagcgatta
     1861 ggttttttgc atcacatcag gctggttccg ttatttgcct gcattcttgg cggtatctta
     1921 gttctattcg cattaagttc tgctctggct ggctatttcc tctggcaggc cgatcgcgat
     1981 cagcgtgatg ttactgcgga gattgagatt cggaccgggt tagcgaacag ttcagatttt
     2041 ttgcgttcag cccggatcaa tatgattcag gccggggctg cgagtcgtat tgcggaaatg
     2101 gaagcaatga agcgaaatat tgcgcaagcc gaatcggaga ttaaacagtc gcagcaaggt
     2161 tatcgtgctt atcagaatcg accggtgaaa acacctgctg atgaagccct cgacactgaa
     2221 ttaaatcaac gctttcaggc ttatatcacg ggtatgcaac ctatgttgaa atatgccaaa
     2281 aatggcatgt ttgaagcgat tatcaatcat gaaagtgagc agatccgacc gctggataat
     2341 gcttataccg atattttgaa caaagccgtt aagatacgta gcaccagagc caaccaactg
     2401 gcccatcagc gcacccgcct gggtgggatg ttcatgattg gcgcgtttgt gcttgccctg
     2461 gtcatgacgc agataacatt tatggtgcta cgtcggatcg tcattcgtcc actgcaacat
     2521 gccgcacaac ggattgaaaa aatcgccagt ggcgatctga cgatgaatga tgaatcggcg
     2581 ggtcgtaatg aaatcggtcg cttaagtcgt catttacagc aaatgcagca ttcactgggg
     2641 atgacagtag ggactgttcg acagggcgcg gaagagattt atcgtggcac cagcgaaatt
     2701 tcagctggca atgcggacct gtcatctcgc accgaagaac aagcggcggc tatcgaacaa
     2761 actgccgcca gcatggagca actcactgcg acggtgaaac agaatgcgga taacgcgcat
     2821 catgccagca aactggcgca agaggcttct attaaagcca gcgatggcgg gcagacggtt
     2881 tccggtgtag taaaaacgat gggcgctatc tccacgagtt cgaagaaaat ttctgagatc
     2941 accgccgtca tcaacagtat tgctttccag acgaatattc tggcactgaa tgctgccgtt
     3001 gaagccgcgc gagcgggtga gcaagggcgt ggatttgccg ttgtcgccag cgaagtacgg
     3061 acactcgcaa gtcgcagcgc tcaggcggcg aaagagattg aaggcttgat cagtgaatca
     3121 gtcaggttaa ttgacctggg gtcggatgag gtggcaacgg ccgggaaaac catgagcact
     3181 attgttgatg ccgtcgcgag tgtcacacat atcatgcagg aaatcgccgc cgcctcggat
     3241 gaacaaagta gaggcataac gcaggttagc caggcgattt ctgaaatgga ta
//
LOCUS       DADMHM010000286         3249 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.291, whole genome shotgun sequence.
ACCESSION   DADMHM010000286 DADMHM010000000
VERSION     DADMHM010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3249)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3249)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3249
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.291"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..689)
                     /gene="ipaH7.8"
                     /locus_tag="JN125_004018"
     CDS             complement(<1..689)
                     /gene="ipaH7.8"
                     /locus_tag="JN125_004018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector E3 ubiquitin-protein ligase
                     IpaH7.8"
                     /protein_id="HAY8873592.1"
                     /translation="MFSVNNTHSSVSCSPSINSNSTSNEHYLRILTEWEKNSSPGEER
                     GIAFNRLSQCFQNQEAVLNLSDLNLTSLPELPNHISALIVENNKLTSLPKLPAFLKEL
                     NADNNRLSVIPELPESLTTLSVRSNQLENLPVLPNHLTSLFVENNRLYNLPALPEKLK
                     FLHVYYNRLTTLPDLPDKLEILCAQRNNLVTFPQFSDRNNIRQKEYYFHFNQITTLPE
                     SFSQLDSSYRI"
     gene            1018..1197
                     /locus_tag="JN125_004019"
                     /pseudo
     CDS             1018..1197
                     /locus_tag="JN125_004019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611684.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(1214..1904)
                     /locus_tag="JN125_004020"
                     /pseudo
     CDS             complement(1214..1904)
                     /locus_tag="JN125_004020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            1827..2078
                     /locus_tag="JN125_004021"
     CDS             1827..2078
                     /locus_tag="JN125_004021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001119656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873593.1"
                     /translation="MPGTTTAMSINFIGITARTMNSNGSHGKPQIPVDYQKLLSIEDI
                     TFCRNRWGNIGENALRRVAVGKKLSFFGSDRGGENAAII"
     gene            complement(2098..3129)
                     /locus_tag="JN125_004022"
     CDS             complement(2098..3129)
                     /locus_tag="JN125_004022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001395480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS630 family transposase"
                     /protein_id="HAY8873594.1"
                     /translation="MPIIAPISRDERRLMQKAIHKTHDKNYARRLTAMLMLHRGDRVS
                     DVARTLCCARSSVGRWINWFTQSGVEGLKSLPAGRARRWPFEHICTLLRELVKHSPGD
                     FGYQRSRWSTELLAIKINEITGCQLNAGTVRRWLPSAGIVWRRAAPTLRIRDPHKDEK
                     MAAIHKALDECSAEHPVFYEDEVDIHLHPKIGADWQLRGQQKRVVTPGQNEKYYLAGA
                     LHSGTGKVSYVGGNSKSSALFISLLKRLKATYRRAKTITLIVDNYIIHKSRETQSWLK
                     ENPKFRGIYQPVYSPWVNHVERLWQALHDTITRNHQCRSMWQLLKKVRHFMETVSPFP
                     GGKHGLAKV"
BASE COUNT          853 a          695 c          763 g          938 t
ORIGIN      
        1 ttaatcctgt aacttgaatc taattgtgaa aaactctccg gaagagtggt tatctgatta
       61 aaatgaaaat aatattcctt ttgtctgata ttgtttctat cagaaaattg aggaaaagta
      121 accagattat tgcgctgagc acagagaatt tccagtttat ccggtaagtc gggtaatgtt
      181 gtcagcctgt tataataaac atgtaaaaat ttcaattttt cgggaagagc cggtaagtta
      241 tatagcctgt tattttcaac aaataatgat gttaaatggt ttggcaaaac aggaaggttt
      301 tccagttgat tagaacgaac acttaaagtt gttaatgact caggaagttc tggtatcaca
      361 gaaagcctgt tattatcagc attaagttct ttgagaaatg caggcagctt tggcaatgat
      421 gttaatttat tattttctac aatcaaagca gaaatatggt ttggtaattc gggaagagac
      481 gtcaaattta ggtctgataa atttaatact gcttcttgat tctgaaagca ctgggagagt
      541 ctgttaaaag caatgcctcg ctcttccccg ggagaagagt tcttttccca ttcagtcagg
      601 attctcagat aatgttcatt actggttgag tttgagttaa tagaggggga gcaagaaact
      661 gatgagtgtg tattatttac agagaacata atgctagggc aaccttatat ttgtgagaat
      721 aaatatttaa aattgtatat ttatacaaat ttcacttacc atttccgata ttaagtttta
      781 atagtttcca ttttacacat aacagaagtt agttgtaatt tatttattga ggttttctat
      841 ggaattcttt ttttattgtg actgcagtca ataataacac tgaattcaac attccagtga
      901 gcaaggaaat gtaatccgag taagtatatt tgttttacat catattttag ccaagctcat
      961 ttattcctat tatagaatga taaattaaaa ttactgtaaa aaaacgatac acatttaata
     1021 cgagggaggc cggcagaaaa acggcttgcg gtaaggcagg cgaaatgtgt gccgcgaatg
     1081 aagtccttgt atgactggat aaagctccag aggaaaactt tgtcaaacca tgctgaaatg
     1141 gtaaaggcgt tcaactatat cctgaatcac tggaatgtac tgaatgagtt ttgccgggta
     1201 gtacttccaa tcattagaat atgtgctttt caatgaagga accgatgact ttttcgtgga
     1261 tttccacgga acgcgagaag cagattgttt tacgtgccag ccgcttgatg cgggggcgga
     1321 gggtcaggtt gttacgttca tacgttgcgt gaagattttg ccggtcaggt gtttctcctc
     1381 cggcacttct ctggcgtagc tgccccagtc atcgctggtc accatgccga tacagaacgg
     1441 agtcaacagg gctaacagtt cccgacaggt ctcatcattc cgtggcccgc aagtgtaagc
     1501 caacacaccg ccagttttag tgttgtacgc ataccagggc cagtgttgtt gcgccttgct
     1561 gccaacgaag cgccactgct catcaagttc acagataagg gcaacatcag cgtgagcgac
     1621 tggcgcagat gttatccgcc ggggcgagag ctttttaatg tccgtatgac ggtattaatg
     1681 ccgattttca gtgttctggc ggtataacag ccccctgcgc cgttatgtgc catttcaacg
     1741 atctgctcct taacgccgag ttttctggct tcataagagt aagtgagctg gaaaacacgt
     1801 ttacatgagc gacaacggaa acgctcatgc cgggaacaac tacggccatg tcgataaact
     1861 tcatcggaat tacagcgcgg acaatgaaca gtaacggtag tcatggaaaa cctcaaatac
     1921 cagtagatta ccagaaactt ctatcgattg aagacattac cttttgccgc aataggtggg
     1981 gtaacattgg tgaaaacgca ttacgccggg tggcagttgg aaaaaaatta tcttttttcg
     2041 gctctgatcg tggtggagaa aatgcggcaa taatctaaat agctgcgctt aataccgcta
     2101 cacttttgcc agcccatgtt tgcctccggg gaatgggctg acggtttcca taaaatggcg
     2161 aacttttttc aacagttgcc acattgagcg gcactgatga ttacgcgtta ttgtgtcgtg
     2221 aagtgcctgc catagccgtt caacatgatt cacccatggc gagtaaaccg gctgataaat
     2281 gcccctgaac ttcgggttct ccttcagcca gctctgtgtt tcccggcttt tgtggataat
     2341 gtagttgtcc acgatcagcg tgatggtttt cgcccgacgg tatgtcgctt taagccgctt
     2401 cagcaggctg atgaacagcg ccgaactttt gctgttgccg cccacatagc tgactttacc
     2461 tgtcccgctg tgcagcgctc cggccagata atatttttca ttctgtcccg gcgtgaccac
     2521 ccgtttttgc tgtccgcgca gttgccagtc cgcaccgatt ttgggatgaa gatggatatc
     2581 cacttcatct tcataaaaga ccggatgctc tgcgctgcat tcgtccagtg ctttatggat
     2641 tgctgccatc ttttcatctt tatgcgggtc acggatacgc agagttggcg cagcccttcg
     2701 ccacacaatc cccgcagacg gcaaccagcg gcgaacggtt ccggcattta actggcaacc
     2761 ggttatctca ttgattttta ttgccagcag ttctgtactc cagcgtgaac gctggtagcc
     2821 aaagtcgccg ggagaatgtt ttaccagctc acgtaacagt gtgcagatat gctcaaacgg
     2881 ccagcgacgg gcacgcccgg caggtaatga tttcagtccc tcaacacccg actgcgtgaa
     2941 ccagttaatc cagcgtccaa cagaggaacg ggcgcagcag agcgttctgg caacgtcgct
     3001 gacacggtcg ccccggtgca gcatcagcat ggcagtcagt ctgcgggcat aatttttatc
     3061 gtgtgtttta tggatggctt tctgcatcag gcgtcgttcg tcacgggaaa ttggtgctat
     3121 gatcggcatt gctcagtccg gttggtgatt tgttttgatt tggcgattga tcagatcgca
     3181 caatccgggc taagttccct caaagggatc tactattccg cgcagctatt taggctgtgt
     3241 cccttaatt
//
LOCUS       DADMHM010000287         3193 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.292, whole genome shotgun sequence.
ACCESSION   DADMHM010000287 DADMHM010000000
VERSION     DADMHM010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3193)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3193)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3193
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.292"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            81..275
                     /locus_tag="JN125_004023"
     CDS             81..275
                     /locus_tag="JN125_004023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000553968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873595.1"
                     /translation="MHQKTAEHEQTRILLTIKNGKVIFIRHVHDDELVGTLSTFLFIA
                     EKAGYDVIAPADEDEDEDEE"
     gene            281..862
                     /locus_tag="JN125_004024"
     CDS             281..862
                     /locus_tag="JN125_004024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001199102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873596.1"
                     /translation="MQYDEFQAEATANGIRTGSMTIDYHDAIRRLDAGEFDTPNVRGL
                     RILQCLAQADEAGLLGKLPVEMKVAQWRWLYVTTFINEEEDKNGTIDILNEHGTTEHA
                     VVYNGMYGFMTIYPGPIRFALQQYIEWNLIQKYGEAEGMGRALFLYQKMLTTSPDKGF
                     ILSDMGREGLEILLDEIINEMNTHGMQSETDIK"
     gene            1111..1428
                     /locus_tag="JN125_004025"
     CDS             1111..1428
                     /locus_tag="JN125_004025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000179800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4752 family protein"
                     /protein_id="HAY8873597.1"
                     /translation="MATDSQLTIETALNVGLALLGYFYIVFCSGRWLSLLFLKKWNKR
                     RKQDERQKAMNAFSEAFGIDGMEPGDPARAISRGGVVILVYRSEEKNDDHKTTSRKNH
                     ISP"
     gene            1382..1696
                     /locus_tag="JN125_004026"
     CDS             1382..1696
                     /locus_tag="JN125_004026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873598.1"
                     /translation="MTITKQRVEKIIYRHEMGLNSDVTAEEVYDLAVLALNLSNIANL
                     KRYELDMDGCDSCGQDCGADMTEDPDGDYVLFDDVVKLFEFDTTTQKLEIPAKEAASE
                     QD"
     gene            1683..2363
                     /locus_tag="JN125_004027"
     CDS             1683..2363
                     /locus_tag="JN125_004027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000034224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ead/Ea22-like family protein"
                     /protein_id="HAY8873599.1"
                     /translation="MSKIDYQALREAAEQATQDEWVAYILPGHNGIYPARTSEGRHCG
                     YFIDWPGVCQGRESISIRTYAVNCNDAWLNTEGDDISGSYVKYKDHQEVVAALEAKCA
                     ALAAENAGIKSAIPESRDIEDDNDNMDDVSLAEDFGFNHAIERMRRQIPETPTTDAFL
                     AEVRAQGVDAAIEAAKNLVAQEYECKDFKAAQSDCCMHPSSDLVGKVEMTEWLVDFAA
                     QLRKGGNQ"
     gene            2360..2896
                     /locus_tag="JN125_004028"
     CDS             2360..2896
                     /locus_tag="JN125_004028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001289976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ead/Ea22-like family protein"
                     /protein_id="HAY8873600.1"
                     /translation="MSEINYQALREVAERAIPAMERLLMLPVDDDLLSEQELKDYGVD
                     IDALNAFKFLTGPETVLALLDERERNQQYIKRRDQENEDIALTVGKLRVELEAAKSKL
                     NEQREYYEGVISDGCKRIAELEAREVQLPTRYDLRYGHPINAYERQVMIPKENGSWLY
                     LIDLEHALRVADIRIKGE"
     gene            2898..>3193
                     /locus_tag="JN125_004029"
     CDS             2898..>3193
                     /locus_tag="JN125_004029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001696189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873601.1"
                     /translation="MALTHHELCQIAYKFLKRNGFKVCFHDRFVAVTSTGEQPDAMGF
                     RNSASCLIEAKCSRADLLADRKKRFRKNPSLGMGDWRFFISEPEIISVEDLPPG"
BASE COUNT          961 a          640 c          827 g          765 t
ORIGIN      
        1 gcctgcctta ttgcacaata cggtgaaaat tacatgcata ttgcctgctt atttctgcgt
       61 aaagcatacg ggagataata atgcatcaga aaacagcaga acacgaacaa accagaatat
      121 tgctgaccat caaaaacggg aaagtaatat tcattcgcca tgttcatgac gatgaacttg
      181 taggaactct ttcaacattc ctgtttattg cagaaaaggc aggatatgac gttattgcac
      241 cagcagatga agatgaagat gaagatgagg aataaatatc atgcaatacg atgaattcca
      301 ggctgaagca acagccaatg gtatacgaac tggcagtatg acgattgatt atcacgacgc
      361 catacgtcgt ctggatgccg gagaattcga tactcctaat gtgcgaggtt tacgtatcct
      421 tcagtgtctg gcgcaagccg acgaagcagg attactgggt aaacttccgg ttgagatgaa
      481 ggttgctcag tggcgatggt tgtatgtgac gacattcatc aacgaagaag aagacaagaa
      541 cggcacaatt gatatcctga atgaacacgg aacaactgaa cacgccgtgg tatataacgg
      601 gatgtatggg tttatgacga tatatcccgg ccccattcga tttgccttac aacagtatat
      661 tgaatggaat ttaattcaaa aatacggcga agctgaagga atgggaagag cgctgtttct
      721 ttatcagaaa atgctcacta cttcccctga taaaggtttc attctttcag atatgggtcg
      781 agaagggctt gaaatccttc tggatgaaat tattaacgaa atgaatactc atggcatgca
      841 atccgaaaca gatattaagt aaaagggacc acatgaccgt tatcgagtat atccaggaaa
      901 atccagattg cagtagagaa gatatatccc tcgcacttgg aagaagcgca acttctatca
      961 gtaataaatt atcacggtta ttgtggaatg ggttaatagt acgaactgga gaaaaaaaca
     1021 aaatgattct gtactgcgta aacaatctgc cgtttggata cagcaatccc ctaagtgtta
     1081 tgttcaacca gttacttaaa caggtaagaa atggcaactg actcacaact aaccatagaa
     1141 acggccctga atgtcggcct ggcgctcctt ggttattttt acatcgtgtt ctgcagcgga
     1201 cggtggctgt cgctgttgtt cctgaaaaaa tggaataaac gccgtaagca ggatgaacgc
     1261 cagaaggcaa tgaatgcgtt ttccgaagcc ttcggaattg acggcatgga accaggggat
     1321 ccagctcgcg caatcagcag agggggtgta gtaatccttg tatatcggag tgaagagaaa
     1381 aatgacgatc acaaaacaac gagtagaaaa aatcatatat cgccatgaaa tgggactgaa
     1441 cagcgatgtc actgccgaag aggtttatga cctggctgta ctggcgctga atttatcaaa
     1501 tatcgcaaac ctgaagcgat acgagcttga tatggatggt tgcgactcgt gcggtcagga
     1561 ttgtggcgca gatatgactg aagatcctga tggtgattat gtcctgtttg atgacgtggt
     1621 taagttgttt gaatttgata caaccactca aaagttagaa atcccggcaa aggaggctgc
     1681 cagtgagcaa gattgactat caggcactgc gcgaggcggc ggaacaggca acgcaagatg
     1741 aatgggtagc atatattttg ccgggtcata acggcattta tcctgcgcgc acgtctgagg
     1801 gtaggcattg cggatacttt attgactggc ctggcgtctg tcaggggcgg gagagcatca
     1861 gcatcagaac ctacgcagtg aattgcaatg acgcatggct aaacaccgaa ggtgatgaca
     1921 tctccggctc atacgttaag tacaaagacc atcaggaagt ggttgccgct cttgaagcca
     1981 agtgcgcggc gctggcagcg gagaatgcgg gaataaagtc tgcaattcca gaatcacggg
     2041 atattgagga tgacaatgac aatatggatg acgtatctct cgcggaagac ttcgggttca
     2101 atcatgcaat agaacggatg aggagacaga tacctgaaac gccaaccact gatgctttcc
     2161 tggctgaagt ccgggcgcag ggggtggatg ctgctataga agctgcaaaa aatctggtgg
     2221 cccaagaata tgagtgtaag gatttcaaag cggcgcagag tgattgctgt atgcacccta
     2281 gttcagacct ggtagggaag gttgaaatga ctgagtggtt agttgacttt gctgcccagc
     2341 ttcgcaaagg aggcaatcag tgagcgaaat taattaccag gcactgcgtg aggtggcgga
     2401 acgtgcaatt ccagcaatgg aacgcctgtt aatgttgcca gttgatgatg atttgttaag
     2461 tgaacaggaa cttaaagatt acggtgtgga tattgatgcg ctcaatgcct tcaaatttct
     2521 gaccggacca gaaaccgtgc tggcactact ggatgaacgg gaaagaaacc agcaatacat
     2581 caaacgccgc gaccaggaga acgaggatat tgcgcttacg gttgggaagc tgcgcgttga
     2641 gcttgaagca gcaaaatcaa aactcaacga gcagcgcgag tattacgagg gagttatctc
     2701 tgatgggtgc aagcgtattg ctgaactgga agcgcgggaa gttcaattac cgactcgcta
     2761 cgaccttcga tatggacacc cgataaatgc atatgagcga caagtcatga tacctaaaga
     2821 aaatggcagt tggctttacc tgattgacct agaacacgca ttacgcgtcg ctgacattcg
     2881 catcaaagga gagtgatatg gcgttaacac accacgaact ctgtcagatt gcgtacaagt
     2941 tccttaagcg caacgggttc aaggtttgct ttcatgaccg ctttgttgct gtaaccagta
     3001 ccggagaaca gccagatgct atgggattca gaaattcagc atcatgcctg atagaggcga
     3061 agtgttctcg tgctgacttg ttggcagata gaaaaaagcg tttccgtaaa aatccctcac
     3121 ttggcatggg cgactggcga ttctttatta gtgagccgga aattatttca gttgaggatt
     3181 tacctcccgg ctg
//
LOCUS       DADMHM010000288         3182 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.293, whole genome shotgun sequence.
ACCESSION   DADMHM010000288 DADMHM010000000
VERSION     DADMHM010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3182)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3182)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3182
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.293"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            353..512
                     /locus_tag="JN125_004030"
                     /pseudo
     CDS             353..512
                     /locus_tag="JN125_004030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001066419.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
     gene            complement(730..2820)
                     /gene="iha"
                     /locus_tag="JN125_004031"
     CDS             complement(730..2820)
                     /gene="iha"
                     /locus_tag="JN125_004031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional siderophore receptor/adhesin Iha"
                     /protein_id="HAY8873602.1"
                     /translation="MRITTLASVVIPCLGFSASSIATAEDVMIVSASGYEKKLTNAAA
                     SVSVISQEELQSSQYHDLAEALRSVEGVDVESGTGKTGGLEISIRGMPASYTLILIDG
                     VRQGGSSDVTPNGFSAMNTGFMPPLAAIERIEVIRGPMSTLYGSDAMGGVVNIITRKN
                     ADKWLSSVNAGLNLQESNKWGNSSQFNFWSSGPLVDDSVSLQVRGSTQQRQGSSVTSL
                     SDTAATRIPYPTESQNYNLGARLDWKASEQDVLWFDMDTTRQRYDNRDGQLGSLTGGY
                     DRTLRYERNKISAGYDHTFTFGTWKSYLNWNETENKGRELVRSVLKRDKWGLAGQPRE
                     LKESNLILNSLLLTPLGESHLVTVGGEFQSSSMKDGVVLASTGETFRQKSWSVFAEDE
                     WHLTDALALTAGSRYEHHEQFGGHFSPRAYLVWDVADAWTLKGGVTTGYKAPRMGQLH
                     KGISGVSGQGKTNLLGNPDLKPEESVSYEAGVYYDNPAGLNANVTGFMTDFSNKIVSY
                     SINDNTNSYVNSGKARLHGVEFAGTLPLWSEDVTLSLNYTWTRSEQRDGDNKGAPLSY
                     TPEHMVNAKLNWQITEEVASWLGARYRGKTPRFTQNYSSLSAVQKKVYDEKGEYLKAW
                     TVVDAGLSWKMTDALTLNAAVNNLLNKDYSDVSLYSAGKSTLYAGDYFQTGSSTTGYV
                     IPERNYWMSLNYQF"
BASE COUNT          796 a          838 c          732 g          816 t
ORIGIN      
        1 gttgatctga cctctcagta aatatcaata cggttctggc gagccgctta cgtgcagcag
       61 tcttatccgg cagtttaaag gggaggacgg agaccaatga ggcactggag cagattcagt
      121 gcagaggtga cctgctttat caaacttaat tgtgacaaaa tggcgattga gaaggtgcaa
      181 ttgacttatc cggattcggt cgtggcgagg tggtgcccct gcattctgct aaccgggtta
      241 tgagccagga gtcagcgata gacaaaggga cttatctgac cgggcccccg gaaaaatggc
      301 gggagagaat gataccttcc tgctgacgag accggacttt gagatgacga gcgatagtgc
      361 ggcagtgatg tacagcctga tcggtagctg caaaacttaa cggaatcgag ccggaaacgt
      421 ggctacgcca cgtgatcagt gtaatcaaca cctggcctgc caaccgcatg aaagagttgt
      481 tgccctggaa cgtcactctc tctgtaaact aatttttacc ccacgtcctt cacggtgcgc
      541 ttacactctg gacaagtatg taaatgataa gttaaaaata atccgtgcat ttcctgtgac
      601 gatattagtt gttggtaacg aaatctcatt agcggatcgg aaatgcactt aacctaatac
      661 gttgccactg ttccgccagg agttgcagtg gcaacgtatt ctaccgtcag tgatagcgtt
      721 ttgttattat cagaactgat agttcagcga catccagtaa tttcgctcag gtatcacata
      781 tcctgttgtt gatgatcccg tctggaagta atcaccggca tacagcgtac tcttaccggc
      841 actgtacagg ctcacgtcac tgtaatcctt gttgagcagg ttattcaccg cagcattcag
      901 cgtcagggca tccgtcatct tccacgacag acctgcatcc accaccgtcc aggctttcag
      961 gtattctcct ttctcatcat acactttctt ctgtacagcg ctcagtgacg aataattctg
     1021 ggtgaaacgt ggtgttttcc cgcgataacg ggcacccagc catgatgcca cctcttcggt
     1081 gatctgccag ttcagtttcg cattcaccat gtgttcaggg gtataactca gcggcgcacc
     1141 tttgttatca ccatcacgtt gttcacttcg ggtccaggtg taattcagtg acagcgtgac
     1201 atcctctgac cacagcggca atgtgccggc aaattccaca ccgtgcaacc gggcctttcc
     1261 gctgtttaca tagctattgg tgttatcatt tatggaataa gagacaatct tgttggagaa
     1321 gtcagtcata aaacctgtga cattggcatt cagaccggcg gggttatcgt aatacacccc
     1381 agcctcataa ctgacgctct cttccggctt caggtcgggg ttaccaagta gatttgtttt
     1441 tccctgcccg gacacaccac taatcccttt atgtagctgc cccattctgg gtgccttata
     1501 tcccgtggtc acaccgcctt tcagcgtcca ggcatctgcc acatcccaga ccagatatgc
     1561 acgcggactg aagtgtcccc cgaattgctc atgatgttca tagcggctgc ccgcagtcag
     1621 cgcaagtgca tccgtgagat gccactcatc ctcagcaaat accgaccagc ttttctgccg
     1681 gaaagtttca cctgtgctgg caaggacaac tccgtctttc atggacgagc tctgaaactc
     1741 gccccccacc gtaaccagat gagattctcc cagaggggta agcagtaatg aattcaggat
     1801 aaggttcgat tccttaagct cccgcggctg accggcaagc ccccatttgt cgcgcttcag
     1861 tacactgcgt acgagctcac gacctttatt ttctgtctcg ttccagttca gatacgattt
     1921 ccatgttccg aaggtgaaag tatgatcata gccagctgaa attttgttcc gctcatagcg
     1981 cagggtccgg tcatatcccc ccgtcagact ccccagttgc ccatcccggt tatcataacg
     2041 ctgccgggtg gtatccatat caaaccagag cacatcctgc tccgacgcct tccagtcaag
     2101 acgtgcacca agattataat tctgtgactc cgtgggataa ggaatacgcg tggctgctgt
     2161 atcgctcagt gatgtgaccg atgagccctg acgctgttgt gtgctaccgc gtacctgcag
     2221 gctgacagaa tcatccacaa gggggccact gctccagaaa ttaaactggc tgctgttacc
     2281 ccatttgttg ctttcctgca gattcagccc tgcattgacg gaagagagcc atttgtctgc
     2341 attctttctg gtaatgatat tcaccacacc gcccatcgca tcagagccat acagtgtgga
     2401 catcggcccc ctgataacct caatacgctc aatggcggcc agagggggca tgaacccggt
     2461 attcatggca gaaaaaccgt tgggagtcac gtcactgctt ccgccctgac gaacaccatc
     2521 aatcagtatc agcgtgtaac tggctggcat tcctcggatg ctgatttcca gcccaccggt
     2581 tttacccgta ccactttcaa catccacacc ctctactgat ctcagagcct ccgccagatc
     2641 gtggtactgg ctggactgca attcctcctg gctaatcaca gaaacactgg cggctgcgtt
     2701 agtcagcttt ttctcatagc cggatgccga gacaatcatc acatcctctg cagtagctat
     2761 gctgctggct gaaaatccga gacagggaat gactacggaa gccagagtgg ttattcgcat
     2821 attactaatc tccgatcatg ttaaccggca agacaataca caaatacaaa caataatgag
     2881 aataatttat atttgccttt ttacaaaaaa taaagattat taacaaaact aaatataaat
     2941 aacaactgcc tcggcatgcc agttaacagc tatccgtatg gcttgttcgg ttttgcgaat
     3001 aaaaaatggt tactgtagaa gcggatttcc accacatgtc aaccatgaat ggtcagtggt
     3061 gcgagacgac tgggatgatt tggtcgatga cttcttccgg tgaatactga tagaaacatt
     3121 gaaatattgt aagagaaagc gttcaaaatt ctgtggcacg tgaaaaattc tacagcgtca
     3181 tc
//
LOCUS       DADMHM010000289         3146 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.294, whole genome shotgun sequence.
ACCESSION   DADMHM010000289 DADMHM010000000
VERSION     DADMHM010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3146)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3146)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3146
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.294"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(233..991)
                     /locus_tag="JN125_004032"
     CDS             complement(233..991)
                     /locus_tag="JN125_004032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HAY8873603.1"
                     /translation="MSQILLQPANAMITLENVHKWYGQFHVLKNINLTVQPGERIVLC
                     GPSGSGKSTTIRCINHLEEHQQGRIVVDGIELNEDIRNIERIRQEVGMVFQHFNLFPH
                     LTVLQNCTLAPIWVRKMPKKEAEALAMHYLERVRIAEHAHKFPGQISGGQQQRVAIAR
                     SLCMKPKIMLFDEPTSALDPEMVKEVLDTMIGLAQSGMTMLCVTHEMGFARTVADRVI
                     FMDRGEIVEQAAPDEFFTHPKSERTRAFLSQVIH"
     gene            complement(999..2102)
                     /locus_tag="JN125_004033"
     CDS             complement(999..2102)
                     /locus_tag="JN125_004033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709065.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HAY8873604.1"
                     /translation="MTKVLLSQPSRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWL
                     MWELIPPLLNWAFLQANWVGSTRADCTKAGACWVFIHERFGQFMYGLYPHDQRWRINL
                     ALLIGLVSIAPMFWKILPHRGRYIAVWAVIYPLIVWWLMYGGFFGLERVETRQWGGLT
                     LTLIIASVGIAGALPWGILLALGRRSHMPIVRILSVIFIEFWRGVPLITVLFMSSVML
                     PLFMAEGTSIDKLIRVLVGVILFQSAYVAEVVRGGLQALPKGQYEAAESLALGYWKTQ
                     GLVILPQALKLVIPGLVNTIIALFKDTSLVIIIGLFDLFSSVQQATVDPAWLGMSTEG
                     YVFAALIYWIFCFSMSRYSQHLEKRFNAGRTPH"
     gene            complement(2112..2809)
                     /locus_tag="JN125_004034"
                     /pseudo
     CDS             complement(2112..2809)
                     /locus_tag="JN125_004034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001272090.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
     gene            complement(2806..>3146)
                     /locus_tag="JN125_004035"
     CDS             complement(2806..>3146)
                     /locus_tag="JN125_004035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="The N-terminal region of this protein, as described
                     by TIGR01726, is a three transmembrane segment that
                     identifies a subfamily of ABC transporter permease
                     subunits, which specificities that include histidine,
                     arginine, glutamine, glutamate, L-cystine (sic), the
                     opines (in Agrobacterium) octopine and nopaline, etc;
                     Derived by automated computational analysis using gene
                     prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HAY8873605.1"
                     /translation="LSNRGITSGFAFLDRGAGFGIVQHLIDYQQGDTYGRVFIVGLLN
                     TLLVSALCIVFASVLGFFIGLARLSDNWLLRKLSTIYIEIFRNIPPLLQIFFWYFAVL
                     RNLPGPRARL"
BASE COUNT          890 a          826 c          751 g          679 t
ORIGIN      
        1 catcaaataa aacaaaaggc tcagtcggaa gactgggcct tttgttttat ctgttgtttg
       61 tcggtgaaca ctctctcgag taggacaaat ccgccgggag cggatttgaa cgttgcgaag
      121 caacggcccg gagggtggcg ggcaggacgc ccgccataaa ctgccagaca tcaaatcaag
      181 caaaaaggcc atccgaaagg atggcctttt tgcttttcga actaacattc aattaatgga
      241 ttacctgcga taaaaatgcc ctcgtacgct ctgatttagg atgcgtaaaa aattcatcag
      301 gtgcagcttg ttccactatc tccccacgat ccataaaaat tacccggtca gcgacggtac
      361 gtgcaaaccc catctcatgt gttacacaca acattgtcat acccgactgc gccagcccaa
      421 tcatcgtatc cagcacctct ttcaccatct ccggatcgag cgccgacgtt ggttcatcaa
      481 acaacataat tttcggcttc atacacagcg aacgcgcaat ggcaacgcgt tgctgctgac
      541 cacctgaaat ctgtccggga aacttatgcg catgttcggc aattctcacc cgctcaaggt
      601 aatgcatcgc cagagcttca gcctctttct taggcatctt gcgtacccaa atcggtgcca
      661 gggtacagtt ctgtaaaacg gtcagatgag ggaagagatt gaaatgctga aataccattc
      721 ccacttcctg cctgatgcgc tcaatattgc ggatatcttc attaagttcg atgccatcta
      781 cgacaatccg tccctgttga tgttcttcca gatgattaat acaacgaatg gttgtcgatt
      841 taccggaacc agaagggcca cacagaacga tccgttctcc cggttgcacg gttaaattta
      901 tatttttcaa aacatggaat tgtccatacc atttatggac gttttccagc gtaatcatcg
      961 cgttagcagg ttgcagtaaa atttggctca tagtgtcctc aatgcggtgt acgcccggcg
     1021 ttaaaacgtt tttccagatg ttggctataa cgtgacatgc tgaaacaaaa gatccagtag
     1081 atcagcgcgg cgaaaacata cccttccgtc gacataccca accaggcggg atcaacggtt
     1141 gcctgctgaa cgctactgaa aagatcgaac aagccgatga tgatcaccag gctggtatct
     1201 ttgaagagtg cgatgatggt atttaccagc ccaggaatta ccagcttcaa cgcctgtggc
     1261 agaataacca gcccctgagt tttccagtac cccaacgcca gcgactctgc cgcttcatat
     1321 tgccctttag gtagggcctg taatccgcct cgcacgactt ccgcaacata tgctgactga
     1381 aacaggatca cgccaaccag cacgcggatc agtttgtcga tactggtgcc ttctgccata
     1441 aacaacggca gcatgaccga agacataaac aatacggtaa tcagcggtac gccgcgccag
     1501 aactcgataa aaatgaccga taagatacgc acaatcggca tatgggagcg gcgacctaac
     1561 gccagtaaga tcccccacgg tagcgccccc gcaatcccaa cggatgcaat aattaaagtt
     1621 agcgtcagcc cgccccattg ccgggtttca acccgctcaa gaccaaaaaa accgccatac
     1681 atcagccacc agacaatcag tgggtaaatc accgcccaga ccgcaatata gcgaccgcga
     1741 tgcgggagta ttttccagaa cattggtgcg attgacacaa ggccaatcag taatgccagg
     1801 ttaattcgcc agcgttggtc gtgtgggtaa agtccataca taaactgacc aaatcgttcg
     1861 tggatgaaga cccaacaggc accggctttt gtgcagtcgg cacgcgttga gccaacccag
     1921 ttagcctgca aaaatgccca gttcagcaac ggtgggatca gttcccacat caaccatatg
     1981 cagccaatag tcagcaggct attgctccag ctggagaaca gattttttcg cacccacacc
     2041 atcgcgcggc ttgagttatg gctcgctggg cgcgagggct gagacagcaa tacttttgtc
     2101 atcatgactc cttagcgttc aacgatcgcg atgcggcggt tatagatatt catcagcagc
     2161 gagatagtca ggctgataat cagatagacc gacatggtca tggctatcgt ctcgatggct
     2221 tgccccgtct ggttcagcac ggtgccagca aacagcgaaa ccatatcggg atagccaata
     2281 gcggcggcaa gagaggagtt tttgacgatg ttgagatact ggctggttaa cggcggaata
     2341 atcactcgca gtgcctgggg aataatgacc tggcgtagcg taaccccagt gaccgagccg
     2401 cttcatgttg accataaggc actgcctgga tcccagcgcg gataatctcg gcgataaatg
     2461 cagaggtata aaccgaaagt gccagcgtta aggctgccag ttcaggaatt aaaaccattc
     2521 cgccgcggaa gttaaagcct cgtagggctg ggacatccca gtgtagtgct gcgccaaaaa
     2581 gccattgcgc cagtaaaggc aaaccgatga tcaacactgc ggcgaacggc caggtgcggc
     2641 gcagttgtcc ggtctttatc tggtatgttt tattaaagcg gaatagccca acagaaagga
     2701 ctatagccat aacaacagcc aggataaacg caataaatcc gtctcccagc tgcggtgacg
     2761 gaatataaag cccacgattg ctcaaaaagg ccagatcaaa cgcgctcaca gcctggcgcg
     2821 tggtccgggc aaattgcgca acacggcaaa gtaccagaag aagatttgca gcagcggggg
     2881 aatattacgg aagatctcaa tataaattgt ggatagcttt cgtagcagcc agttatccga
     2941 aagtctcgcc agaccgataa agaagcctaa aacagaagcg aacacaatac acaatgcaga
     3001 aaccagtagc gtattgagta agccgacaat aaaaacgcgt ccgtaggtgt cgccctgctg
     3061 gtaatcgatc aaatgctgga caataccgaa gccagcgccg cgatccagaa aggcaaaacc
     3121 tgaagtaatg ccacgattac tgagat
//
LOCUS       DADMHM010000290         3126 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.295, whole genome shotgun sequence.
ACCESSION   DADMHM010000290 DADMHM010000000
VERSION     DADMHM010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3126)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3126)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3126
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.295"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..1022)
                     /gene="ccp"
                     /locus_tag="JN125_004036"
     CDS             complement(<1..1022)
                     /gene="ccp"
                     /locus_tag="JN125_004036"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c peroxidase"
                     /protein_id="HAY8873606.1"
                     /translation="MKMVSRITAIGLAGVAICYLGLSGYVWYHDNKRSKQADVQASAV
                     SENNKVLGFLREKGCDYCHTPSAELPAYYYIPGAKQLMDYDIKLGYKSFNLEAVRAAL
                     LADKPVSQSDLNKIEWVMQYETMPPTRYTALHWAGKVSDEERAEILAWIAKQRAEYYA
                     SNDTAPEHRNEPVQPIPQKLPTDAQKVALGFALYHDPRLSADSTISCAHCHALNAGGV
                     DGRKTSIGVGGAVGPINAPTVFNSVFNVEQFWDGRAATLQDQAGGPPLNPIEMASKSW
                     DEIIAKLEKDPQLKAQFLEVYPQGFSGENITDAIAEFEKTLITPDSPFDKWLRGDENA
                     LTAQQK"
     gene            1422..3071
                     /gene="treF"
                     /locus_tag="JN125_004037"
     CDS             1422..3071
                     /gene="treF"
                     /locus_tag="JN125_004037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-trehalase TreF"
                     /protein_id="HAY8873607.1"
                     /translation="MLNQKIQNPNPDELMIEVDLCYELDPYELKLDEMIEAEPEPEMI
                     EGLPASDALTPADRYLELFEHVQSAKIFPDSKTFPDCAPKMDPLDILIRYRKVRRHRD
                     FDLRKFVENHFWLPEVYSSEYVSDPQNSLKEHIDQLWPVLTREPQDHIPWSSLLALPQ
                     SYIVPGGRFSETYYWDSYFTMLGLAESGREDLLKCMADNFAWMIENYGHIPNGNRTYY
                     LSRSQPPVFALMVELFEEDGVRGARRYLDHLKMEYAFWMDGAESLIPNQAYRHVVRMP
                     DGSLLNRYWDDRDTPRDESWLEDVETAKHSGRPPNEVYRDLRAGAASGWDYSSRWLRD
                     TGRLASIRTTQFIPIDLNAFLFKLESAIANISALKGEKETEALFRQKASARRDAVNRY
                     LWDDENGIYRDYDWRREQLALFSAAAIVPLYVGMANHEQADRLANAVRSRLLTPGGIL
                     ASEYETGEQWDKPNGWAPLQWMAIQGFKMYGDDLLGDEIARSWLKTVNQFYLEQHKLI
                     EKYHIADGVPREGGGGEYPLQDGFGWTNGVVRRLIGLYGEP"
BASE COUNT          780 a          801 c          770 g          775 t
ORIGIN      
        1 tttttctgtt gcgccgtcag cgcattttca tctccacgca accatttatc aaatggggaa
       61 tccggcgtaa ttaatgtttt ctcaaattca gcaatggcat cagtaatatt ttcgccactg
      121 aaaccttgcg gataaacttc gaggaactgc gctttaagct gcggatcttt ttccagctta
      181 gcaataattt cgtcccagga tttcgacgcc atttcaatcg ggttcaacgg cggtccacct
      241 gcctgatcct gcaatgttgc cgcacgacca tcccagaact gctcaacgtt aaatactgag
      301 ttaaataccg tcggcgcgtt aatcggccca actgcgccac caacaccaat cgatgttttt
      361 ctgccatcga cgccccccgc attcaacgca tggcaatgag cgcatgaaat ggtgctatca
      421 gccgataaac ggggatcgtg atacagcgca aagcccaacg ccactttttg cgcatcggta
      481 ggcagttttt gcgggatggg ctgcaccggt tcattgcgat gctccggagc agtatcattg
      541 ctggcgtaat attccgcgcg ctgttttgca atccaggcca gtatttccgc ccgctcttca
      601 tcactcacct tacccgccca gtgtagcgcg gtataacgcg ttggtggcat agtttcatac
      661 tgcatcaccc attcaatctt attcagatcg ctttgcgaaa cgggtttatc agccagcagt
      721 gccgcacgca cggcctcgag gttaaaagat ttatatccaa gcttaatgtc gtaatccatc
      781 aactgtttcg cgccaggaat ataataatag gcgggtaatt ctgccgaagg cgtgtggcaa
      841 tagtcgcatc ctttttcgcg gagaaagcct aaaaccttat tattttcact gacagcagat
      901 gcctgaacat cggcctgttt actgcgttta ttatcgtggt accacacata accagataac
      961 cctaaatagc aaatcgcgac gccagccagg ccgatcgcgg taatacgtga gaccattttc
     1021 attattcttc cctcacggtg gtgagttatt gtgacccaga aaattttcca gaatgctgca
     1081 aacgtctctg cgagacaaag ccatcataaa aaacagggag atacgctttt tgataggaat
     1141 caattacatg aatataaact atcaataaga tagcctgtgc ctattaccca gatcaggaat
     1201 ggcatatcat gattgcggcg agagcaggat tgaatgttct gaaaatgaaa aacaacacca
     1261 aatccgtatt tttataaatt ccattgatat tagtgcgtta tattttttga caagttaata
     1321 aacgtgatcc accgcacgct ttgtagccca ccaggcggag cgaatgacta cccttaaaga
     1381 aaagccgata attagcgacg aatttcggag gttggatcct tatgctcaat cagaaaattc
     1441 aaaaccctaa tccagacgaa ctgatgatcg aagtcgatct ctgctatgaa ctggacccgt
     1501 atgaattaaa actggatgag atgatcgagg cagaaccgga acccgagatg attgaagggc
     1561 tgcccgcctc tgatgcgctg acgcctgccg atcgctatct cgaactgttc gagcatgttc
     1621 agtcggcgaa aattttcccc gacagtaaaa cctttcccga ctgcgcaccc aaaatggacc
     1681 cgctggatat tttaatccgc taccgtaaag tgcgccgtca tcgtgatttt gacttgcgca
     1741 agtttgttga aaatcacttc tggctgccgg aggtctactc cagcgagtat gtatcggacc
     1801 cgcaaaattc cctgaaagag catatcgacc agctgtggcc ggtgctaacc cgcgaaccac
     1861 aggatcacat tccgtggtct tctctgctgg cgctaccgca gtcatatatt gtcccgggcg
     1921 gccgttttag cgaaacctac tattgggatt cctatttcac catgctgggg ctggcggaaa
     1981 gtggtcggga agatttgctg aaatgcatgg ccgataactt cgcctggatg atcgaaaact
     2041 acggtcacat ccccaacggc aaccgcacct attatttgag ccgctcgcaa ccaccggttt
     2101 ttgcgctgat ggtggagttg tttgaagaag atggtgtacg cggtgcgcgc cgctatctcg
     2161 accacctgaa aatggaatat gccttctgga tggacggtgc agaatcgttg atccctaatc
     2221 aggcctatcg ccatgttgtg cggatgccgg acggatcgct gctcaaccgt tactgggacg
     2281 atcgcgacac gccgcgtgac gaatcctggc ttgaggacgt tgaaaccgcg aaacattctg
     2341 gtcgcccgcc caacgaggtg taccgcgatt tacgagcggg ggcggcctcc ggttgggatt
     2401 actcttcccg ttggctgcgt gatactggtc gtctggcgag tattcgtacc acccagttca
     2461 tccccatcga tctgaatgcc ttcctgttta aactggagag cgccatcgcc aacatctcgg
     2521 cgctgaaagg cgagaaagag acagaagcac tgttccgcca gaaggccagt gcccgtcgcg
     2581 atgcggtaaa ccgttacctc tgggatgatg aaaacggcat ctaccgcgat tacgactggc
     2641 gacgcgaaca actggcgctg ttttccgctg ccgccattgt gccactctat gtcggtatgg
     2701 cgaaccatga acaggccgat cgtctggcaa atgccgtgcg cagtcggtta ctgacacctg
     2761 gcgggattct ggcaagcgag tacgaaaccg gtgaacagtg ggataaaccc aacggctggg
     2821 caccgttaca atggatggcg attcagggat ttaaaatgta cggcgatgac cttctgggtg
     2881 atgaaatcgc gcgaagctgg ctgaagacgg tgaatcagtt ctatctggaa cagcacaaac
     2941 tgatcgaaaa ataccatatt gccgatggtg ttccacgcga aggcggcggt ggcgagtatc
     3001 cgttgcagga tgggtttggc tggactaacg gtgtggtacg ccgtttaatt ggtttgtacg
     3061 gcgaaccata atatttttac agccagccgc taacttcctg ctggctgtaa aattatcctc
     3121 ttcagg
//
LOCUS       DADMHM010000291         3115 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.296, whole genome shotgun sequence.
ACCESSION   DADMHM010000291 DADMHM010000000
VERSION     DADMHM010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3115)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3115)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3115
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.296"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            577..1293
                     /locus_tag="JN125_004038"
     CDS             577..1293
                     /locus_tag="JN125_004038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873608.1"
                     /translation="MNDNSLLKNSSLFIAYMGCVGWVSAYSYGWGTSFYYGFPWWVVG
                     AGLDDVARSLLYAIIVMGILFTGWGIGILFFLLIKKRSKIQDLSFFRLFFAITLLFFP
                     VIFELLILKQHFILPLSLSCIISSLVISIIIRIYGRIFSVSCFSDIPFVREHSIKLIM
                     AGFLVYFWLFSFLVGWYKPQLKKEYQMLCYNNSWYYVLARYDSRLVLSSSFKDDSNRF
                     LIFNTEQSGFYEINDVYVRK"
     gene            1845..2249
                     /locus_tag="JN125_004039"
     CDS             1845..2249
                     /locus_tag="JN125_004039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858300.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873609.1"
                     /translation="MNTALIVALMCMWYAVPAAAKETLLAMPRNSTEHCYAEINVHGP
                     YGVYFRVVPHPPGGKSWVECNSDYYYSDKPPGVQILGTHAGCRVYGICGTTSTLHVAG
                     RGVVCIKNICSPRGMIIHRIRKRPVVAVSDEM"
     gene            2312..2611
                     /locus_tag="JN125_004040"
     CDS             2312..2611
                     /locus_tag="JN125_004040"
                     /inference="COORDINATES: protein motif:HMM:NF013677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY8873610.1"
                     /translation="MTKTVSTSKKTRKQHSPEFCSEALKLAERIGVAAAARELSLYES
                     QLYAWRSKLQQQMTSSERESELAAENARLKRQLAVQAEELAILQKAATYFAKRLK"
     gene            2608..2943
                     /locus_tag="JN125_004041"
                     /pseudo
     CDS             2608..2943
                     /locus_tag="JN125_004041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707076.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            3014..>3115
                     /locus_tag="JN125_004042"
     CDS             3014..>3115
                     /locus_tag="JN125_004042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY8873611.1"
                     /translation="MSRKTQRYSTEFKAEAVKTVPENQLSISEGASRL"
BASE COUNT          881 a          646 c          706 g          882 t
ORIGIN      
        1 ttgtgggcca taaatattcc aaaaaaatag cccgctccgt ttattaccgg aacgggcgag
       61 agcatgacat tgtctgtaat tataatgaga ctgctgattc tacttatttt taatttcaag
      121 aaaagcgttt tctacaaaga attatgagat ttaatgtttt gtttagacaa tattatcatt
      181 ctgttcaata atgaaagtct tcatcaacaa caagtaaaaa caacgtccct ctcatcgaac
      241 cggacttgca gatttcccgc atccggctct cttgcaacac atcagacctt cacgttcggg
      301 cggttatggg gaaggtccag caagctgtat gagccctaac tgtttgaata ccagtagatt
      361 accagaaact tctatcgatt gaagacatta ccaactagcg ttactaaatg ttggccacgt
      421 tttgttcact tgtctggttt tgatagtagc attctgcaga gtattttgat atgataaata
      481 tgcattaaca atgatattat tgttaatttc ccagcatgaa aattaaaaga tcaacttttt
      541 atctcgaata ttttttacat tatcagttgg tttcttatga atgacaattc attgcttaaa
      601 aattcttcat tattcatcgc ctatatggga tgtgtagggt gggtcagtgc ttattcttat
      661 ggctggggaa cctcttttta ctatggattt ccatggtggg ttgttggtgc aggtttggat
      721 gatgttgcca gaagtttact ctatgctatc atagtaatgg gtatactttt taccggttgg
      781 gggattggta ttttattttt tcttcttata aagaaaagaa gtaaaataca agacttgagt
      841 ttttttagac tattttttgc tattacccta ctgtttttcc ctgtaatatt cgaactttta
      901 attctcaaac aacatttcat acttccatta tcactttcat gcattattag ttcattggtt
      961 atttcaataa taattcgcat atatggacgg atcttttctg tatcatgttt ttcagatatc
     1021 ccttttgtta gagaacacag cattaagtta attatggctg gttttttggt ttatttttgg
     1081 cttttttcct ttcttgttgg ctggtataaa cctcaattaa aaaaagaata tcagatgctt
     1141 tgttataata atagttggta ttatgttctt gctcgttatg attcacggct cgttttgtct
     1201 agttcattta aagatgacag taacagattc ttaatattta atacagaaca gtcgggattt
     1261 tatgaaatca atgatgttta tgtcagaaag taataatcct cttccacaaa gtgaattaaa
     1321 cgaatatata atgcgttcga agtatatgta ttgagctgtc atactgagaa acaaacctta
     1381 gggcagcaca attaaagcca gaaacaacta tgcaagaaag ttactaaata agtgctcgga
     1441 acagtaaaac actcaggggg gactcagtcc agattatgta atcagataaa ttgccaaaca
     1501 tcacaaatca ccagcaggac tgagtgatgc cgagcattgc accaataccc cgtgatgaac
     1561 gatgcctgat gcagaaagct ccctataaaa caaagaacaa aaactacgac cggcgattca
     1621 ccgtcatact gatgctgcat cgtggtgaca ctgtctgtca ctttcatgtt gactgaacaa
     1681 ctctgctgcg aagaaggtgt accgccggcg ggatttgatt gtccggcgtc tagcttccac
     1741 ttccctgatg gaactgaaag ttgttatggc cggtcagctt gccctgtccg caggacatga
     1801 ggtgctgtga cggacagcac cagtaacgga aagtgacaat aaaaatgaat actgcgctga
     1861 tagttgcact aatgtgtatg tggtatgcgg tacccgctgc tgcaaaagag actttactgg
     1921 ctatgccacg taattcaaca gaacattgct atgcggagat taatgtgcac ggaccatatg
     1981 gggtgtattt ccgagtggtc ccgcatcccc ccgggggaaa gagctgggtc gaatgtaaca
     2041 gtgactacta ttactctgat aaaccaccgg gagtacagat actcggaacc catgcagggt
     2101 gtcgggtata cggaatctgc gggaccacct cgacactgca tgtggctgga agaggggttg
     2161 tgtgtattaa aaatatatgc agtccacgtg ggatgataat tcacaggata cggaaacgtc
     2221 ctgtagtggc tgtaagcgat gagatgtgat cttacccagc aatagtggac acgcggctaa
     2281 gtgagtaaac tctcagtcag aggtgactca catgacaaaa acagtatcaa ccagcaaaaa
     2341 aacacgtaaa cagcattcgc ctgaattttg cagtgaagcc ctgaagcttg ctgaacgcat
     2401 cggtgttgct gccgcagccc gtgaactcag cctgtatgaa tctcagctct atgcgtggcg
     2461 cagcaaactg cagcaacaga tgacctcgtc tgagcgtgaa agtgaactgg ccgctgaaaa
     2521 tgcccgcctg aagcggcaac tggcggtgca ggcagaggaa ctggctatcc tccaaaaggc
     2581 cgcgacatac tttgcgaagc gcctgaaatg aagtatgtct ttattgaaaa acatcaggct
     2641 gagttcagca tcaaggcaat gtgccgcgtg ctccgggtgg cccgcagcgg ctggtatacg
     2701 tggtgtcagc ggcggacagg gataagccct cgtcagcagt tccgtcagca ctgcgacagc
     2761 gttgtcctcg cggcggcctt tacccggtca aaacagcgtt acggtgcacc acgcctgacg
     2821 gatgaactgc gtgctcaggg ttaccacttt aacgtaaaaa ccgtggcggc aagcctgcgc
     2881 cgtcaggggc tgagggcaaa ggcctcccgg aagttcagcc cggtcagtta ccgcgcacat
     2941 ggcctgaggt gaggtagcct gagtttaacg gacactcctt cctgaaatag aatggcatca
     3001 gaaggagcca ataatgagca gaaaaaccca acgttactct acggagttta aagccgaagc
     3061 cgtcaaaacg gttcctgaaa atcagctttc gatcagtgaa ggcgcttccc gatta
//
LOCUS       DADMHM010000292         3103 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.297, whole genome shotgun sequence.
ACCESSION   DADMHM010000292 DADMHM010000000
VERSION     DADMHM010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3103)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3103)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3103
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.297"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..190)
                     /locus_tag="JN125_004043"
     CDS             complement(<1..190)
                     /locus_tag="JN125_004043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF898 family protein"
                     /protein_id="HAY8873612.1"
                     /translation="MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLP
                     WALMKCKRYLYANMEVNGQ"
     gene            383..885
                     /locus_tag="JN125_004044"
                     /pseudo
     CDS             383..885
                     /locus_tag="JN125_004044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026287.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
     gene            complement(931..1347)
                     /gene="rraB"
                     /locus_tag="JN125_004045"
     CDS             complement(931..1347)
                     /gene="rraB"
                     /locus_tag="JN125_004045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E inhibitor RraB"
                     /protein_id="HAY8873613.1"
                     /translation="MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLE
                     TLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAE
                     KFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGVRH"
     gene            1509..2513
                     /gene="argF"
                     /locus_tag="JN125_004046"
     CDS             1509..2513
                     /gene="argF"
                     /locus_tag="JN125_004046"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HAY8873614.1"
                     /translation="MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLT
                     GKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYD
                     GIQYRGYGQEIAETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLV
                     YAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTED
                     VAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRDYQVNSKMMQLTGNPEVKYLHCLP
                     AFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK
                     "
     gene            complement(2585..>3103)
                     /locus_tag="JN125_004047"
     CDS             complement(2585..>3103)
                     /locus_tag="JN125_004047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000036417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HAY8873615.1"
                     /translation="WQHYQNSRKLQELIWDKLVAYVNDFNLSNQEKSRLILRLFDDVK
                     LLFNEVPVSILVNDIFLKDFFMKQPDFAKWYFYQLLKKYEGEQLYLNELGYVYGNEEK
                     TNEIVNNNPGYVVEIFEEKMGNELKIRTRMMEILRDGKINIYEYINKEQLEKLNPPED
                     LRIAIKKLGWNN"
BASE COUNT          867 a          703 c          662 g          871 t
ORIGIN      
        1 gttgtccgtt aacttccata ttagcataga gataacgctt acatttcatt aatgcccatg
       61 gtaaatagat acctagcgtt ataatcgtta acaacacatt caccacacaa ataagaaaat
      121 atctctcacc tgtaccatga aaaacaaacg aatgggacgg aacatccatt tcattaataa
      181 cttgagccat aaaaattccc tgaattaaaa aatccattga tataatttat atatacagac
      241 agtaaaatgt tctgccacgt tacaatactc ttatcagtaa taggctggca aaaactttat
      301 tgctttataa gatgcttgcg cacgtaagaa gagagtggta ttaaacaaat gtataattac
      361 tttattttta ttgggttaaa ctatgaataa cattgcgccg caatcacctg taatgcgtcg
      421 cctgacgcta caggataatc ctgctattgc ccgcgtcatt cgtcaggtat ccgccgaata
      481 cggtcttacc gctgataaag gctacaccgt cgccgatccg aatcttgacg aactgtatca
      541 agtgtatagt cagccgggtc atgcatattg ggtggttgag tacgagggtg aagtggtcgg
      601 cggcggtggg attgcgccat tagcaggtag tgaatcggac atttgcgaac tgcaaaagat
      661 gtattttctt ccggctattc gcggtaaagg gctggcgaaa aaactggcct taatggcgat
      721 ggagcaggca cgagagatgg gcttcaaacg ctgctatctg gaaacgaccg ctttttaaag
      781 gaagccattg cgctttatga gcatttgggc tttgagcata tcgactatgc acttggctgc
      841 acgggccatg ttgattgtga agtgcggatg ttgcgcgaac tctaaaaaaa tgcccgctag
      901 tgtgtgctat cgggcatttt aatcaattaa ttagtggcga accccgtcat cgtcttcatc
      961 gacaaaatct tcatcgtcgc cgtcttcgcc attaggatct tcaaaataag tgccccaacc
     1021 gtcgtactca acgtcaaatt tctccgccaa tgtcatcagt tgttcaacct gggcatcgat
     1081 cagatcggca ttcaacgcgc actcgctgag gatgtcgcag caaatcacga tatcaccatc
     1141 ttcaacttcc agctcttctg gatcggtcac ttcgtaaccg agtttaaacg cttcaactgc
     1201 tgctttttcc agggtttcca gatcgtctgc ggaaagatgg tgttcgatgg tgtacagcgc
     1261 gtccggatcg ctgccatctt ccagtaattc ttcaataatc aaacgagttt cttcacgctg
     1321 ttcttccagt tgttccgggt ttgccatggc tcattcctct taatgtcctg ccgatactct
     1381 tattgtcaca taccactgac attgcctcca cctttgtgac aaagatttat gctttagact
     1441 tgcaaatgaa taatcatcca tataaattga attttaattc attgagacgt tagccacagg
     1501 agggatctat gtccgggttt tatcataagc atttcctgaa attactcgat ttcacgccag
     1561 ctgaactcaa cagcctgctg cagttagccg cgaagctgaa agccgataag aaaagcggca
     1621 aagaagaagc caaactcact ggtaaaaaca tcgcgctcat cttcgaaaaa gactcgaccc
     1681 gtacccgatg ctctttcgaa gttgccgcat atgaccaggg tgctcgcgtt acttatctcg
     1741 gcccaagcgg cagtcagatt ggtcataaag agtcgattaa agacactgcc cgcgtgctgg
     1801 gtcgcatgta tgacggtatt cagtatcgcg gctatggtca ggagattgcc gaaacactgg
     1861 cggaatacgc tggcgtgccg gtatggaacg gcctgaccaa tgagtttcac cccacgcagt
     1921 tgctggcgga tctcctcacc atgcaggagc atttacccgg taaagcattc aacgaaatga
     1981 cgctggtcta tgcaggtgac gcacgtaaca acatgggcaa ttcgatgctc gaagctgcgg
     2041 cgcttaccgg tctggatttg cgtctggtcg cgccacaggc atgctggccg gaagctgcgc
     2101 tggttacgga atgccgcgcc ctggcacagc aaaatggcgg gaatattacg ctgacggaag
     2161 atgtagccaa aggtgttgaa ggtgctgact ttatctatac cgatgtatgg gtgtcgatgg
     2221 gggaagcaaa agagaaatgg gcagaacgga ttgcattact gcgtgattat caggtgaaca
     2281 gcaagatgat gcagttgacc ggtaacccgg aggtcaaata cctccactgc ctgcccgcgt
     2341 ttcatgacga ccagacgacg cttggtaaga aaatggcgga agagtttggc ctacatggcg
     2401 gaatggaagt gactgatgag gtcttcgaat ctgccgccag cattgttttt gatcaggcgg
     2461 aaaaccgcat gcataccatc aaagcggtga tggtcgcgac gctcagtaaa taattgatat
     2521 cgctataaag atgccgggaa atacaaaaac atcccggcat cacattattt tatgcagtaa
     2581 tagttcaatt attccacccc aattttttta ttgctatacg taaatcttcc ggaggattta
     2641 atttttctaa ctgttcttta ttaatatatt catatatatt tattttccca tcccggagga
     2701 tttccatcat tcttgttcta atttttaatt cattacccat cttttcttca aaaatctcaa
     2761 cgacataacc cggattgtta tttacaattt catttgtttt ttcttcatta ccataaacat
     2821 atcctaactc attaagatac agctgttcgc cctcatactt cttaagtaat tgatagaagt
     2881 accacttcgc aaaatcaggt tgcttcatga aaaaatcctt caaaaaaata tcatttacta
     2941 aaatgctgac aggcacttca ttaaatagca acttaacatc atcaaataac cttagtatta
     3001 agcgtgattt ttcttgattg cttaagttaa aatcattgac atatgcaacc aacttatccc
     3061 aaatcaattc ctgtaattta cggctatttt ggtaatgctg cca
//
LOCUS       DADMHM010000293         3009 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.298, whole genome shotgun sequence.
ACCESSION   DADMHM010000293 DADMHM010000000
VERSION     DADMHM010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3009)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3009)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3009
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.298"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            119..1306
                     /locus_tag="JN125_004048"
     CDS             119..1306
                     /locus_tag="JN125_004048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001401609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber protein"
                     /protein_id="HAY8873616.1"
                     /translation="MYSSHQKPTPSDIGALPTTGGTISGPLFVTDGITGALKGNADTA
                     TKLAAAPKINGVKFDGSADINLTPENIGAFARRSTGAYADSDGAVPWNAESGAYNVTR
                     SGDSYILVNFYTGVGSCRTLQMKAHYRNGGLFYRSSRDGYGFEEGWAEVYTSKNLPPE
                     SYPVGAPIPWPSDTVPSGYALMQGQTFDKSAYPKLAAAYPSGVIPDMRGWTIKGKPAS
                     GRAVLSQEQDGIKSHTHSASASSTDLGTKTTSSFDYGTKSTNNTGAHTHSLSGSTGSA
                     GVHTHGNGIRWPGGGGSALAFYDGGGFTYVQNSQYQVSPGTSSRRSYYQRIQTQSAGA
                     HTHSLSGTAASSGAHAHTVGIGAHTHSVAIGSHGHTITVNAAGNAENTVKNIAFNYIV
                     RLA"
     gene            1306..1878
                     /locus_tag="JN125_004049"
     CDS             1306..1878
                     /locus_tag="JN125_004049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HAY8873617.1"
                     /translation="MAFRMSEQARTIKIYNLLAGTNEFIGEGDAYIPPHTGLPANSTD
                     IAPPDIPAGFVAVFNSDEASWHLVEDHRGKTVYDVASGDALFISELGSLPGNVTWLSP
                     EGEFQKWNGTAWVKDTEAEKLFRIREAEEKKTRLIQEATDNITILQDAVNFEMATDEE
                     VSMLSSWKKYRVLVSRIDINTAPDIVWPEL"
     gene            complement(1889..2434)
                     /locus_tag="JN125_004050"
     CDS             complement(1889..2434)
                     /locus_tag="JN125_004050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001026782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine acetyltransferase"
                     /protein_id="HAY8873618.1"
                     /translation="MNISELKKCIHYEVIGCKRPFSWRKAIVRAIKHRRSRYLFWWRI
                     AKYLFDKGGYRRKIAGKIERFILDKYNVTVPLTVNIGKGFDISYLNGVVIGHKVTIGE
                     NCSIKPGVTIGLRGEFNDMDIVIGNNVTIGCNATILGGKVHIGNNVKIGAHALVLHDI
                     PDDSTFITKFHSEIIYNSSHT"
     gene            2519..2647
                     /locus_tag="JN125_004051"
                     /pseudo
     CDS             2519..2647
                     /locus_tag="JN125_004051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308311.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
     gene            complement(2751..2999)
                     /locus_tag="JN125_004052"
     CDS             complement(2751..2999)
                     /locus_tag="JN125_004052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinI-like family protein"
                     /protein_id="HAY8873619.1"
                     /translation="MRVEICIAKEKITKMPNGAVDALKEELTRRISKRYDDVEVIVKA
                     TSNDGLSVTRTADKDSAKTFVQETLKDTWKSADEWFFH"
BASE COUNT          799 a          664 c          712 g          834 t
ORIGIN      
        1 tgcgacgagt gtaaatatcc attgggattg tactgcaaat gcgtcagttt ctgtttatac
       61 ctcgccaaca tattcagcga gtaagccttc cagcgttacc tatggtgttg tttatacgat
      121 gtatagctca catcagaaac ctacaccatc agatattgga gcgctgccaa cgactggagg
      181 gactatttca ggtccgttgt ttgttactga tgggatcacc ggggcactga aggggaacgc
      241 cgataccgcg acgaaacttg cggcagcccc aaaaattaac ggtgttaagt ttgatggctc
      301 ggcggatatt aacctcacgc cggaaaatat tggtgcattt gcccgacgtt cgacgggggc
      361 ttatgcggat tcggatggag ccgttccctg gaatgccgaa tcaggcgctt acaatgtcac
      421 ccgctctggc gacagctata ttctggttaa cttctatacc ggagtcggaa gttgccggac
      481 cctgcagatg aaggcgcatt acagaaatgg tggtctgttc taccgttctt caagagacgg
      541 ttatggtttt gaggaaggct gggcagaagt ttatacctcg aaaaatcttc caccagaaag
      601 ctacccagtc ggcgcaccaa tcccgtggcc atcagatacc gttccgtctg gttatgccct
      661 gatgcagggg cagacttttg acaaatctgc ttacccgaaa cttgcagccg cttatccgtc
      721 aggcgtgatc cctgatatgc gtggctggac gattaagggc aaacctgcca gtggtcgggc
      781 cgtattgtct caggaacagg acggcattaa atcgcacacc cacagcgcca gcgcatccag
      841 tacggatttg gggacgaaaa ccacatcgtc gtttgattac ggcactaaat ccacgaataa
      901 caccggggcg catacgcaca gtctgagtgg ctctacgggg tctgccggtg ttcatactca
      961 tggtaatggt attcgttggc caggaggcgg cggttctgcg ttagcatttt atgatggcgg
     1021 tgggttcact tatgtccaga attcacagta tcaagtaagc ccggggactt cttcccgtag
     1081 atcgtattat caacgtattc agacacagtc agcaggtgct catacccact cgctgtctgg
     1141 tactgcagca agttctggcg cacatgcaca tactgtaggt attggtgcgc atacgcactc
     1201 cgttgcgatt ggttcacatg gacacaccat caccgttaac gctgcgggta acgcggaaaa
     1261 caccgtcaaa aacatcgcat ttaactatat tgtgaggctt gcataatggc attcagaatg
     1321 agtgaacaag cacggaccat aaaaatttat aatctgctgg ccggaactaa tgaatttatt
     1381 ggtgaaggtg acgcatatat tccgcctcat acaggtctgc cagcaaacag taccgatatt
     1441 gcaccaccag atattcctgc tggctttgtg gctgttttca acagtgatga ggcatcgtgg
     1501 catctcgttg aagatcatcg gggtaaaacg gtttatgacg tggcttccgg cgacgcgtta
     1561 tttatttctg aactcggctc attaccggga aatgtcactt ggttatcccc ggaaggggag
     1621 tttcagaagt ggaacggcac agcctgggtg aaggatacgg aagcagaaaa actcttccgg
     1681 atccgggagg cggaagagaa aaagacaaga ttaatccagg aagcgactga taacataaca
     1741 attctgcagg atgctgttaa ttttgaaatg gcaactgatg aggaggtttc gatgctatct
     1801 tcctggaaaa aataccgggt attagtgagt cggattgata taaatacagc cccggatatc
     1861 gtatggcctg agctgtgatt aaacggaatt atgtgtgaga tgaattataa ataatttcag
     1921 agtgaaattt ggtaatgaat gtggagtcat caggaatgtc atgcagtacc aatgcatgag
     1981 ctcctatttt tacattattc cctatatgca ctttgccacc aaggatggtg gcgttacagc
     2041 caatggttac attatttcct atgacaatat ccatatcatt aaattcaccg cgaagtccaa
     2101 tagttacccc aggcttaatt gaacaatttt cacctattgt aactttgtga ccgataacaa
     2161 cgccattgag ataagatatg tcgaaccctt taccaatatt tacagttaag ggaacggtta
     2221 cattgtattt atcaagaatg aagcgttcta tttttcctgc aatctttcgc cggtatccgc
     2281 ctttatcaaa aagatatttt gctatgcgcc accaaaataa ataacgtgat cttctgtgtt
     2341 ttattgcgcg aacaattgct tttcgccagg agaaagggcg tttacaacct attacttcat
     2401 agtgtatgca ctttttaagt tcactaatat tcatatatct attattcagt aaagataatt
     2461 ctgtaactta ttattatatt aggtttaatg ggctttttct acagtttact gtattactct
     2521 cacgccggag caataggcac aggccggacg acaaattgca tcaggagttt ctcgccagaa
     2581 ggtggtgatc atctatgatg ttggcgtatc gactttgtat aagaagtttc cggtcggaga
     2641 tgaatgaaac cgtagcacgt cgtatgcaag aacgtgccac ggctggctgg cgaactttcg
     2701 atagtgcgag tattgaatga tttccagctg ttaccgattt tacgtgttaa ttagtgaaaa
     2761 aaccactcgt cagcagactt ccaggtatct ttcagagtct cctgaacaaa agttttagct
     2821 gaatctttat cggcggtgcg cgtaacagaa aggccatcgt tgctggtggc ttttacgatc
     2881 acctctacat cgtcataacg tttactgatg cgtcgggtta attcttcctt taacgcatcc
     2941 acagcaccgt ttggcatttt agtgattttt tctttagcga tacagatctc aacacgcata
     3001 acaccctcc
//
LOCUS       DADMHM010000294         3005 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.299, whole genome shotgun sequence.
ACCESSION   DADMHM010000294 DADMHM010000000
VERSION     DADMHM010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 3005)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3005)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3005
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.299"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            173..763
                     /locus_tag="JN125_004053"
     CDS             173..763
                     /locus_tag="JN125_004053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000380343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2313 domain-containing protein"
                     /protein_id="HAY8873620.1"
                     /translation="MDSLQDDYTKLLYGLMPPGPAWSDTDGVLDGLAPSLVRVHQRAD
                     ELVIEIDPGQSTELIERYEELYGLPDSCSPVGTQTLRQRQQRLEAKANVAGGINEQFF
                     LDQLEALGYTGVTIEQFQHLDASPDPEWGDRWRYFWRVTLPVDAGAQWQTCTDACNTP
                     IRTWGDTVAECVINKLCPSHTVVLFSYPDEDEDAQD"
     gene            750..1403
                     /locus_tag="JN125_004054"
     CDS             750..1403
                     /locus_tag="JN125_004054"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY8873621.1"
                     /translation="MHRIDTLTAVKDKFGPGKNGFTDGNLRTGRLATWLNSAMWNAIQ
                     EEICGVIEKAGIELNKEEHDQLYKAILLLVGGAINEEALLIKNNLSDVEDRDEAVENL
                     GLKPTVDKAKNAVQRDGDTMTGELKIRGVNALRIFNEAFGLIFRRSEECLHLIPTSEG
                     QGENGDIGPLRPFTINLRTGEISMSHKVSVGGGSQVNGALGIGVQNALGGEFNCFRG"
     gene            1438..1959
                     /locus_tag="JN125_004055"
     CDS             1438..1959
                     /locus_tag="JN125_004055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873622.1"
                     /translation="MDVYANGQHVFRFQNGVAIALKNIQAGNAKKFTLSSANNSTKNA
                     AFYLWGNPSRPVVAELGDDSGWHFYSQRNTDGSITFAVNGQVIPLNYGNFDARYKHRT
                     EGVQDVRYGYEMYYNPGSNTVSWTFRSPSGHGLSGIAISDTGRNSADNVNGVYYRPLQ
                     KLINGTWYNVASI"
     gene            2019..2507
                     /locus_tag="JN125_004056"
     CDS             2019..2507
                     /locus_tag="JN125_004056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HAY8873623.1"
                     /translation="MTKQYDVTWLFSEDGKNWYEEQKNFASDTIKMVYTGDGRVVWVG
                     KDVTGIEPRNASVIEVPDITANRRITAPGYWFYRNDEFVFDYRLKAEDERDALLAQVS
                     ARTGEWEEDLLLGLISDEDREKLKAYRIYAKSLQAMDFSAITDKSSYNAIEWPVSPEG
                     SS"
     gene            2531..>3005
                     /locus_tag="JN125_004057"
     CDS             2531..>3005
                     /locus_tag="JN125_004057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707257.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY8873624.1"
                     /translation="MSVVISGALTDGAGIPMSGCQIILKSRVNTSEVVMRTRADVVTG
                     NNGEYSFEAQVGKYCVYLKRDWRDEYCVGDIAVYDDSKPGTLKTANHLSEIAAAGEKA
                     QQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDF"
BASE COUNT          791 a          658 c          841 g          715 t
ORIGIN      
        1 tgccagaggg gcgtatgtat ctgtccagaa tcagtgaggc catcagtttg tctgctggtg
       61 aagtggccca ccggttaatc gtcccttcat cggatattga cctaggggag accgagcttc
      121 cggtgctcgg cgagatcacc tagcaggctt atgacccggc aaggagtaaa taatggattc
      181 gttacaggat gattatacaa agctgctgta cggactgatg ccgccggggc ctgcatggtc
      241 agataccgac ggtgtacttg acggtctggc accatcgctt gtgcgtgttc accagcgggc
      301 tgatgaactg gtgattgaaa tcgatcccgg tcagtccaca gagctgattg aacgttatga
      361 agaattgtat ggtttacctg attcctgttc ccctgtcgga acccagacat tacgccagcg
      421 tcagcaacgt cttgaagcaa aagccaatgt ggctggtggc ataaatgagc agttcttcct
      481 ggatcagctt gaggcgctgg gatataccgg cgtaacgatc gaacagttcc agcacctgga
      541 tgcaagcccc gatccggaat ggggagatcg ctggcgttat ttctggcgtg tgacgttgcc
      601 ggtggatgcc ggtgctcagt ggcagacatg cacggacgcc tgcaacacac cgatccggac
      661 gtggggggat acggttgcgg agtgcgtgat taataaatta tgtccgtcac acaccgtcgt
      721 tttattttcc tatccagatg aggatgaaga tgcacaggat tgatacgctg actgcggtaa
      781 aagataagtt tggtccgggt aagaacggat ttactgacgg aaatcttcgc acaggacgtc
      841 ttgctacctg gctgaacagt gccatgtgga atgccattca ggaggaaatc tgtggtgtca
      901 ttgagaaggc cgggatagaa ctgaataaag aagaacacga ccagctatat aaggctatat
      961 tattgctggt gggcggtgca attaacgaag aggcattgct gataaaaaat aacctttcgg
     1021 atgtggaaga cagggatgag gctgttgaaa acctcggatt aaaacccacg gtggataagg
     1081 caaaaaatgc cgttcagcgt gatggcgaca ccatgaccgg agagctgaaa atccgtggtg
     1141 ttaatgcgct gaggattttc aacgaagctt ttggcctgat ttttcgtcgt tcggaagagt
     1201 gcctgcacct tattcccacc agtgaaggtc agggggaaaa tggcgatatt ggtcccctgc
     1261 gcccgttcac cattaatctg cggacgggtg aaatatccat gtcgcataaa gtgtctgttg
     1321 gcggtggttc gcaggtcaat ggtgcgctgg gtatcggcgt tcagaacgcc ctgggggggg
     1381 aattcaattg ctttcgggga taacgataca ggtataaaac aaaacggcga cggcattctg
     1441 gatgtttatg cgaatggaca gcatgtattt cgtttccaga atggtgtggc gatagcgtta
     1501 aaaaatattc aggccggaaa tgctaaaaaa ttcacgttat ccagcgccaa caactccacg
     1561 aaaaatgcag cgttttattt gtggggtaat ccatccaggc ctgttgttgc agagcttggt
     1621 gatgattccg gctggcattt ctacagccag agaaataccg atggtagtat cacattcgct
     1681 gtaaacggac aggtaattcc gttaaattac ggaaacttcg atgcccgcta taaacatcga
     1741 actgaggggg tacaggatgt gcggtatggt tatgaaatgt attacaaccc tggcagcaac
     1801 accgtttcat ggacgtttcg ctcaccttcg ggacacgggt tgtcagggat agcgatatcg
     1861 gataccggcc gtaactcagc ggataacgtc aacggtgtgt attaccgacc gctgcaaaaa
     1921 ctgattaatg gcacctggta taacgtagcg agtatttaac aatgttgcat ttaaaaaata
     1981 ttacggtagg taatccgaaa accgcggaac aatatcagct gacaaaacag tatgatgtca
     2041 cctggctttt ttcggaagac ggcaaaaact ggtatgaaga acagaagaac tttgccagtg
     2101 acaccataaa aatggtttac accggagacg ggcgcgtggt gtgggtcggt aaggatgtga
     2161 caggcattga accccgtaac gccagtgtta ttgaagttcc tgatattacc gccaaccgcc
     2221 gcattaccgc gccgggttac tggttttacc gcaatgatga atttgtcttt gactacagac
     2281 tcaaagcgga agatgagcgt gatgcccttc tggctcaggt cagtgcccgg acaggggaat
     2341 gggaagaaga cctgctgctg gggctaatca gcgacgaaga ccgggaaaaa ctgaaagcgt
     2401 accgtattta cgcgaaatcg ctgcaggcga tggatttcag cgccatcact gataaatcct
     2461 catacaacgc cattgaatgg cccgtctctc cggaaggttc ttcctgattt aatttatcgc
     2521 gagaaaaact atgtctgtag tgatatcagg tgcgctgact gatggcgcag gcatccccat
     2581 gtccggatgc cagattattc tgaaatcccg tgtaaacacc tcagaagtgg tgatgcgtac
     2641 cagggctgat gtagtgaccg gaaataacgg tgaatattcg tttgaggcac aggtcggaaa
     2701 atattgcgtg tatctgaaac gggactggcg cgacgagtac tgtgttggcg acattgctgt
     2761 atacgacgac tcaaagcccg gcactctgaa aacggctaac catctgtctg aaatcgcagc
     2821 agcaggcgaa aaggcacaac agaagtcccg ggataatctg gggctgaaaa gtgcggccac
     2881 gatggaagca cagagcgaca tttacgaccg gacaaaaggc cgtctggcga tacccggcgc
     2941 attcggcttt gggtgtgctt ttctgcctga agatgttatc cgttttgaca ctaagagtga
     3001 tttcc
//
LOCUS       DADMHM010000295         2984 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.300, whole genome shotgun sequence.
ACCESSION   DADMHM010000295 DADMHM010000000
VERSION     DADMHM010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2984)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2984)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2984
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.300"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(83..922)
                     /locus_tag="JN125_004058"
     CDS             complement(83..922)
                     /locus_tag="JN125_004058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000935594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HAY8873625.1"
                     /translation="MLNVAIENQNGWNYSVPAPHKTGAGISTPKVTRAHNRAEAVFLC
                     VMHSHIQIMVRRAGQPQGWPGSRVTGSANPVRLTTHEISTSAGELINLSLEDVIMATT
                     LSHPDVTIENGRAVTTSISIAEFFGKQHHHVVQKIESLECSELFLTSNFSRVKFEHRG
                     NSYNAYQITKNGFVFLVMGFTGKKAATFKEAYIAEFDRMEAELRQNNTPPADKMIPGD
                     GRTLVVHFDKFGNVEFTETVPDGALVCTLETFRFYLEKQGWTLVNRGAIKNMTVEQLL
                     SLK"
     gene            complement(1344..1496)
                     /locus_tag="JN125_004059"
     CDS             complement(1344..1496)
                     /locus_tag="JN125_004059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706802.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1391 domain-containing protein"
                     /protein_id="HAY8873626.1"
                     /translation="MDTIDLGNNESLVCGVFPNQDGTFTAMTYTKIKTFKTEAGARRW
                     LAKNTS"
     gene            complement(1699..2106)
                     /locus_tag="JN125_004060"
     CDS             complement(1699..2106)
                     /locus_tag="JN125_004060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAY8873627.1"
                     /translation="MKNETFGARLLHRRKKLKLSQAALGKLVKVAHVTISQWERDETQ
                     PAGKRLFALSQALQCSPTWLLFGDEDKQPGEPIPDNQPAILTEDQKELLQLFDALPES
                     EQKALLSEMRARVENFNKLFEELLKARKRSANK"
     gene            2183..2410
                     /locus_tag="JN125_004061"
                     /pseudo
     CDS             2183..2410
                     /locus_tag="JN125_004061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706800.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
     gene            2394..2816
                     /locus_tag="JN125_004062"
     CDS             2394..2816
                     /locus_tag="JN125_004062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873628.1"
                     /translation="MKIRHEHIESVLLALAAEKGQAWVANAITEEYLRQGGGELPLVP
                     GKDWNNQQNIYHRWLKGETKAQREKIQKLIPAVLAILPRELRHRLCIFDTLERRALLA
                     AQEALSTAIDAHDDAVQAVYRKAHFSGGGSSDDSVVVH"
BASE COUNT          771 a          660 c          737 g          816 t
ORIGIN      
        1 tccgttaaac tcaggctacc tcagcctgag ggcaggtgta aaacaataat caagcatggg
       61 gttcatatcc atagctccat ttttatttta aggaaagcaa ctgctctacg gtcatgtttt
      121 taattgcgcc ccggtttaca agagtccagc cctgtttttc cagataaaac cggaaagtct
      181 ccagggtaca gaccagtgcg ccatcaggaa cggtttcggt gaattcgaca ttgccgaatt
      241 tgtcgaagtg aacaaccaga gtgcgaccat cacccggaat catcttgtca gcaggtgggg
      301 tgttattctg gcgcagttcg gcctccatgc ggtcgaactc agcaatgtag gcttccttga
      361 atgtggcggc ttttttgccc gtgaagccca tcaccaggaa aacgaagccg tttttggtga
      421 tttggtaggc gttataagaa ttgccgcggt gttcgaattt aacccgcgaa aagttgctgg
      481 ttaaaaatag ttcagaacat tcgagggatt ctattttttg aacaacatgg tgatgctgct
      541 tgccaaaaaa ctcagcaatc gaaatagaag tagtgacggc gcgaccattt tcgatggtta
      601 cgtcagggtg agaaagggta gtagccataa tgacatcctc aagtgataag ttaattaact
      661 caccagcaga ggtgctaatc tcatgggtgg tgagacgcac agggttagca ctaccggtca
      721 ctcgagaacc cggccagcct tgcggctgcc ccgcacgcct caccataatt tgaatgtggc
      781 tgtgcattac gcataaaaaa accgcttcag cgcggttatg cgctcgagta actttcgggg
      841 tgctaatccc ggcacccgtt ttatgaggtg caggtacact ataattccac ccgttctggt
      901 tttcaatagc tacattcaac attttctctt tcctttcatc accgaagtga attttgtgat
      961 gcggtgccta gtgcctccag gtgacgttaa ccagttaaca attacagtcg gctttcccac
     1021 ccaaaccaat aaggactaac atgactttta actgtgccgc gtgcgcttag ccgcattcac
     1081 cgcatcacaa aattcacttt aaaaagggcg gacatcagcc agcaattaaa ccgatgccgc
     1141 caactggtac ttcacacagc aatgtcgtta tttacaaccg gaagcgcact cccaccattt
     1201 aaatttcaca gacaagaccg actctttatg aataccggaa atgcgccttc gtgttgtgcc
     1261 cggttttatt tcaccacctc cgggctttgg tggcctcggc tatacctcta cagcgagaat
     1321 attgaattaa tccaataaat ggattagctg gtatttttgg caagccagcg acgtgcgcca
     1381 gcttcggttt taaacgtttt gattttggta tacgtcatgg cggtgaatgt gccgtcctga
     1441 ttgggaaaca cgccacacac tagggattcg ttgttgccaa gatcgatagt atccatgctg
     1501 acctcatttc cccttaacgc cggggtagcg gaactgtttg ctgagaacac cgtgcggtgt
     1561 cttgatgaat gaaatttaga ataacctaag atgtgaagtc aagattttat gtagaaaaac
     1621 ctaagttttt ttgatgtaaa aaacacaagt gtttgaaagt ttgtgctttt tattacaggg
     1681 tgtggagaaa aaaggggatt atttgtttgc gcttcttttg cgagctttga gtagttcttc
     1741 aaaaagtttg ttgaaatttt caactcgagc acgcatctct gacaacaggg ccttttgctc
     1801 tgactcaggc agtgcgtcga acagttgaag taactctttt tgatcttctg tcagaatggc
     1861 tggctgatta tccgggatcg gttcgcctgg ttgtttatct tcatccccaa aaagaagcca
     1921 agtcggtgag cactgaagcg cttggctcag tgcgaataat cttttccccg ccggctgtgt
     1981 ttcatctctt tcccattgag aaattgttac gtgagccact ttgaccagct tacctaatgc
     2041 ggcctgagac agttttaatt ttttacgcct atgtaagagg cgagcaccga aggtttcgtt
     2101 tttcatatta gggaattcta atttttcttg acttaggttt ctctacgatc tagttttctt
     2161 aggaaaatct aaggagctcg atatgttgaa aattgatgct atagcgtttt ttggcagcaa
     2221 aacaaagctt gccaatgccg caggagttag gctggcaagc attgctgcat ggggggaact
     2281 ggttcctgaa ggtcgcgcga tgcgcctgca agaggcatct ggcggggaac tttagtacga
     2341 ccccaaagtt tatgacgaat atcgtaaggc aaaacgacct gggaaggtga ttcatgaaaa
     2401 tcaggcatga gcacatcgaa tcagtgctgt tagccctggc agccgaaaaa gggcaggcgt
     2461 gggtcgctaa cgcaattact gaagaatatc tgcggcaggg gggcggcgaa ttgcctctgg
     2521 taccaggcaa ggactggaac aatcagcaga atatctatca ccgttggttg aaaggtgaaa
     2581 cgaaagcgca aagggaaaaa attcagaaac tgatccctgc ggttctggca attcttccgc
     2641 gtgagctgcg tcaccgactc tgtatcttcg ataccctgga acgccgtgca ttactggcgg
     2701 cgcaggaagc gttgagtacg gcaattgatg cgcatgatga cgcagttcag gccgtttacc
     2761 ggaaagcaca tttcagcggt ggtgggtcgt ccgacgattc tgtcgttgtg cattgatgtt
     2821 tatgccgaac ctcctctggt tctgttgatt ggggaatcac agattatatc cggaggaagg
     2881 ttcggcacca gacgaggttt ctatatatga gcatgaaact aatggcaaaa gcaatggaaa
     2941 ttaaagtggg taatccattg cgtaagctgg ttctgattaa gctg
//
LOCUS       DADMHM010000296         2962 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.301, whole genome shotgun sequence.
ACCESSION   DADMHM010000296 DADMHM010000000
VERSION     DADMHM010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2962)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2962)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2962
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.301"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            20..643
                     /locus_tag="JN125_004063"
     CDS             20..643
                     /locus_tag="JN125_004063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine kinase"
                     /protein_id="HAY8873629.1"
                     /translation="MLVAINDMNISNAITAEYLAQHREFIQRAKVIVADCNISEEALA
                     WILDNAANVPVFVDPVSAWKCVKVRDRLNQIHTLKPNRLEAETLSGIALSGREDVAKV
                     AAWFHQHGLNRLVLSMGGDGVYYSDISGENGWSAPIKTNVINVTGAGDAMMAGLASCW
                     VDGMPFAESVRFAQGCSSMALSCEYTNNPDLSIANVISLVENAECLN"
     gene            631..1569
                     /locus_tag="JN125_004064"
     CDS             631..1569
                     /locus_tag="JN125_004064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine-5'-phosphate glycosidase"
                     /protein_id="HAY8873630.1"
                     /translation="MSELKISPELLQISPEVQDALKNKKPVVALESTIISHGMPFPQN
                     AQTAIEVEETIRKQGAVPATIAIIGGVMKVGLSKEEIELLGREGHNVTKVSRRDLPFV
                     VAAGKNGATTVASTMIIAALAGIKVFATGGIGGVHRGAEHTFDISADLQELANTNVTV
                     VCAGAKSILDLGLTTEYLETFGVPLIGYQTKALPAFFCRTSSFDVSIRLDSASEIARA
                     MAVKWQSGLNGGLVVANPIPEQFAMPEESINAAIDQAVAEAEEQGVIGKESTLFLLAR
                     VAELTGGDSLKSNIQLVFNNAILASEIAKEYQRLAG"
     gene            1663..2913
                     /locus_tag="JN125_004065"
     CDS             1663..2913
                     /locus_tag="JN125_004065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NupC/NupG family nucleoside CNT transporter"
                     /protein_id="HAY8873631.1"
                     /translation="MDIMRSVVGMVVLLAIAFLLSVNKKSISLRTVGAALLLQIAIGG
                     IMLYFPPGKWAVEQAALGVHKVMSYSDAGSAFIFGSLVGPKMDVLFDGAGFIFAFRVL
                     PAIIFVTALISLLYYIGVMGLLIRILGSIFQKALNISKIESFVAVTTIFLGQNEIPAI
                     VKPFIDRMNRNELFTAICSGMASIAGSMMIGYAGMGVPIDYLLAASLMAIPGGILFAR
                     ILSPATEPSQVTFENLSFSETPPKSFIEAAASGAMTGLKIAAGVATVVMAFVAIIALI
                     NGIIGGIGGWFGFANASLESIFGYVLAPLAWIMGVDWSDANLAGSLIGQKLAINEFVA
                     YLSFSPYLQTGGTLEVKTIAIISFALCGFANFGSIGVVVGAFSAISPKRAPEIAQLGL
                     RALAAATLSNLMSATIAGFFIGLA"
BASE COUNT          692 a          670 c          812 g          788 t
ORIGIN      
        1 actcgataat accggtgaaa tgctggttgc tataaatgac atgaatatta gcaacgctat
       61 tacagctgaa tatctcgcac agcaccgtga atttattcag agggcaaagg tcattgtcgc
      121 ggactgtaat atcagtgaag aggcactggc atggattctg gataatgccg ccaacgtacc
      181 cgtatttgtc gatccggttt ccgcatggaa atgtgtcaaa gtgcgcgacc gtctaaatca
      241 gatccacact ctgaagccaa accgccttga agcggaaacc ctgagtggga ttgcgctgtc
      301 agggcgtgaa gatgtggcaa aagttgctgc ctggttccat caacatggcc tgaaccgact
      361 ggtattgagc atgggcggcg acggcgttta ttacagcgat atcagcggtg aaaatggctg
      421 gtctgcgccg atcaaaacca atgttattaa tgttaccgga gcgggtgatg ccatgatggc
      481 gggacttgct tcgtgttggg tagacggaat gccgtttgcc gaatctgttc gtttcgcaca
      541 gggatgttcg tcaatggcgc tctcctgtga atacaccaat aaccccgatt tatcgattgc
      601 caacgttata tcgttagtgg agaacgcaga atgtctgaat taaaaatttc ccctgaatta
      661 ttacaaattt ccccggaagt gcaggacgct ttaaaaaaca aaaaaccggt tgtggcgctg
      721 gaatcgacca ttatttctca cgggatgccg ttcccacaaa atgcccagac cgcaattgaa
      781 gtagaagaaa ctattcgtaa acagggcgct gtacctgcca ctatcgccat tattggcggc
      841 gtgatgaaag tgggtttaag caaagaagaa attgaattac tgggtcgtga agggcataac
      901 gtgaccaaag ttagtcgtcg cgatttacct tttgttgttg ccgccggaaa aaatggcgca
      961 accactgtgg cttcaacgat gattattgcg gcgcttgccg gaattaaagt atttgccacc
     1021 gggggaattg gtggtgtgca tcgcggggcg gaacatacct tcgatatttc tgccgatttg
     1081 caagaactgg caaatactaa tgtcaccgtt gtttgtgccg gggcgaaatc tattctcgat
     1141 ttaggattaa ccactgagta tttagaaacc ttcggtgtgc cgttaattgg ctatcagact
     1201 aaagcgctgc ctgcgttttt ctgccgtacc agctcgtttg acgtcagtat tcgtctcgac
     1261 agcgccagtg aaattgcccg tgcaatggcg gtgaaatggc aaagcgggct gaacggtggc
     1321 ctcgtggtag cgaacccgat cccggaacag tttgcgatgc cggaggaatc tatcaatgca
     1381 gccatagatc aagccgtcgc cgaagccgaa gagcagggcg ttattggtaa agaaagtaca
     1441 ctgttcctgc tggcgcgcgt tgctgagctg accggcggtg acagcctgaa atccaatatc
     1501 cagctggtgt tcaacaacgc cattctggcg agtgaaattg ccaaagaata ccagcgtctc
     1561 gcgggttaat ttctgacggg cagaaagccg tcgcccgtac tcatcaagca taccaaaacc
     1621 tggcgctgac gccgggttta ctggcatgaa gggaaaatca ttatggatat aatgagaagt
     1681 gttgtgggga tggtggtgtt actggcaata gcatttctgt tgtcagtgaa taaaaagagc
     1741 atcagtttgc gcacggttgg agccgcactg ctgctgcaaa tcgctattgg tggcatcatg
     1801 ctctactttc caccgggaaa gtgggcagta gaacaggcgg cattaggcgt tcataaagtg
     1861 atgtcttaca gtgatgccgg tagcgccttc atttttggtt cgctggttgg gccgaaaatg
     1921 gatgtcctgt ttgacggtgc gggttttatc ttcgcctttc gcgtacttcc ggcgattatt
     1981 ttcgttactg cgctcatcag tctgctgtac tacattggcg tgatggggct gctgattcgc
     2041 atccttggca gcattttcca gaaagctctt aacatcagca aaatcgaatc ttttgtcgca
     2101 gtcacaacta ttttcctcgg gcaaaatgag atcccggcga tcgttaaacc gtttatcgat
     2161 cgcatgaatc gcaacgagtt gtttaccgca atttgtagcg ggatggcgtc cattgctggt
     2221 tcgatgatga ttggttatgc cggaatgggc gtaccaattg actacctgtt agcggcatcg
     2281 ctgatggcga tcccaggtgg tattttgttt gcacgtattc ttagcccggc caccgagcct
     2341 tcgcaggtca catttgaaaa tctgtcgttc agcgaaacgc cgccaaaaag ctttatcgaa
     2401 gcggcggcga gcggtgcgat gaccgggctg aaaatcgccg ctggtgtagc gacggtggta
     2461 atggcgtttg tcgcaattat tgcgctgatc aacggcatta tcggcggaat tggtggctgg
     2521 tttggtttcg ccaatgcctc tctggaaagt atttttggct atgtgctggc accgctggcg
     2581 tggatcatgg gtgtggactg gagtgatgcc aatcttgcgg gtagcctgat tgggcagaaa
     2641 ctggcgatta acgaattcgt cgcttacctg agtttctccc catacctgca aacgggcggc
     2701 acgctggaag tgaaaaccat tgcgattatc tcctttgcgc tttgtggttt tgctaacttt
     2761 ggttctatcg gtgttgtcgt tggcgcattt tcggctattt cgccaaaacg cgcgccggaa
     2821 atcgcccagc ttggtttacg ggcgctggca gcagcaacgc tttccaacct gatgagtgcg
     2881 actattgccg ggttctttat tggtttagct tgagtttcat tgccggatgt acgcgcttat
     2941 taagcgttgc atccggcaat cg
//
LOCUS       DADMHM010000297         2945 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.302, whole genome shotgun sequence.
ACCESSION   DADMHM010000297 DADMHM010000000
VERSION     DADMHM010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2945)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2945)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2945
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.302"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..273)
                     /locus_tag="JN125_004066"
     CDS             complement(<1..273)
                     /locus_tag="JN125_004066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1471 domain-containing protein"
                     /protein_id="HAY8873632.1"
                     /translation="MFSRVLALLAVLLLSANTWAAIEINNHQARNMDDVQSLGVIYIN
                     HNFATESEARQALNEETDAQGATYYHVILMREPGSNGNMHASADIYR"
     gene            600..995
                     /gene="rpsF"
                     /locus_tag="JN125_004067"
     CDS             600..995
                     /gene="rpsF"
                     /locus_tag="JN125_004067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020456251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HAY8873633.1"
                     /translation="MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGR
                     RQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPM
                     VKAKDERRERRDDFANETADDAEAGDSEE"
     gene            1002..1316
                     /gene="priB"
                     /locus_tag="JN125_004068"
     CDS             1002..1316
                     /gene="priB"
                     /locus_tag="JN125_004068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001315977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal replication protein N"
                     /protein_id="HAY8873634.1"
                     /translation="MTNRLVLSGTVCRTPLRKVSPSGIPHCQFVLEHRSVQEEAGFHR
                     QAWCQMPVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDS
                     GD"
     gene            1321..1548
                     /gene="rpsR"
                     /locus_tag="JN125_004069"
     CDS             1321..1548
                     /gene="rpsR"
                     /locus_tag="JN125_004069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012986941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HAY8873635.1"
                     /translation="MARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRI
                     TGTRAKYQRQLARAIKRARYLSLLPYTDRHQ"
     gene            1590..2039
                     /gene="rplI"
                     /locus_tag="JN125_004070"
     CDS             1590..2039
                     /gene="rplI"
                     /locus_tag="JN125_004070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005134442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HAY8873636.1"
                     /translation="MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNI
                     EFFEARRAELEAKLAEVLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADA
                     VTAAGVEVAKSEVRLPNGVLRTTGEHEVSFQVHSEVFAKVIVNVVAE"
     gene            complement(2110..2904)
                     /locus_tag="JN125_004071"
     CDS             complement(2110..2904)
                     /locus_tag="JN125_004071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2686 family protein"
                     /protein_id="HAY8873637.1"
                     /translation="MTLPTTIYSFPAYLPRFSSTDKPAKLKFHQYARATLLSNRGRDH
                     NCDGRRTVEIHKLDLSDWQAFNKLATKCNAYDGVTMNGDNSFGWNHEATLDNIHAQKY
                     NKAYAGARLTAELKYLLQDVESFEPNSKYTIHKVVLGPGYGTPDYTGQTIGYVVTLPA
                     QMPNCWSSELPTIDLYIDQLRTVTGVSNALGFIIAALLNAYSDLPHDLKIGLRSLSNS
                     AAIYSGLGFERVPQDRDIRSDRMHLTPANHPDLWTQENGEWIYLRN"
BASE COUNT          760 a          670 c          715 g          800 t
ORIGIN      
        1 gcgataaata tccgcgctgg cgtgcatatt gccgttactc cccggttccc gcatcagaat
       61 tacgtggtag tacgttgcgc cctgcgcatc tgtctcttca tttaatgcct gacgtgcttc
      121 gctttcagtg gcgaaattat gattgatata aatcacgcct aagctctgta cgtcgtccat
      181 atttctggcc tggtggttat taatttcaat ggctgcccat gtatttgcac ttagcaaaag
      241 cacagccaga agggctaaaa cacgactgaa catagatacc tcctcgacgg ctgactttgt
      301 gtgctctcct ctgtgatgat cttctgattt aattttaatc aatgataaag aagttgatgg
      361 tgaccatttc tgatgcagtt gttcgaaaaa acactgtgac ggaatgtgat gaacttcaaa
      421 tcagcgagtt agttcttttg agcgaaagat gagatttatt tgtcggctgg ccttgagttt
      481 agtggggcat acaagtacta taacgcgtca tttttcagcc gacctttaac acgttccttg
      541 cctccccggg attcggctga cccagacagg aggctgaata atccgtaagg agcaattcga
      601 tgcgtcatta cgaaatcgtt tttatggtcc atcctgacca gagcgaacag gttccgggca
      661 tgatcgagcg ctacactgct gccatcactg gtgcagaagg caagatccac cgtctggaag
      721 actggggccg ccgtcagctg gcttacccga tcaacaaact gcacaaagca cactacgttc
      781 tgatgaacgt tgaagctccg caggaagtga tcgatgagct ggaaactacc ttccgcttca
      841 acgatgccgt tatccgcagc atggttatgc gtaccaagca cgctgttacc gaagcatctc
      901 cgatggttaa agcgaaagac gagcgccgtg agcgtcgcga tgatttcgca aacgaaaccg
      961 ctgatgatgc tgaagctggg gattctgaag agtaatttct gatgaccaac cgtctggtgt
     1021 tgtccggcac cgtgtgcagg actccccttc gaaaggtcag tccatcagga attcctcact
     1081 gccagttcgt gcttgagcat cgttctgtgc aggaggaagc cggttttcac cggcaggcgt
     1141 ggtgccaaat gcccgttatt gttagcggac acgaaaacca ggccattact cacagtataa
     1201 cggtcggcag tcgcataacc gttcaggggt tcatttcatg ccacaaggca aagaacggac
     1261 tgagcaaaat ggttttgcat gccgagcaga ttgaattgat agattctgga gactagccat
     1321 atggcacgtt atttccgtcg tcgcaagttc tgccgtttca ccgcggaagg cgttcaagag
     1381 atcgactata aagatatcgc tacgctgaaa aactacatca ccgaaagcgg taagattgtc
     1441 ccaagccgta tcaccggtac ccgtgcaaaa taccagcgtc agctggctcg cgctatcaaa
     1501 cgcgctcgct acctgtccct gctgccgtac actgatcgcc atcagtaatc ggtcacggtc
     1561 cattaatacg actttgagag gataaggtaa tgcaagttat tctgcttgat aaagtagcaa
     1621 acctgggtag cctaggtgat caggtaaacg ttaaagcggg ctatgctcgt aacttcctgg
     1681 taccgcaggg taaagctgtt ccagctacca agaaaaacat tgaattcttc gaagcacgtc
     1741 gcgctgaact ggaagctaaa ctggctgaag ttctggcagc tgctaatgct cgcgctgaga
     1801 aaatcaatgc actggaaact gttaccatcg cgtctaaagc tggcgacgaa ggtaaactgt
     1861 tcggttccat cggtactcgc gacatcgctg acgctgtaac tgcagctggc gttgaagtgg
     1921 ctaagagcga agttcgtctg ccgaacggcg ttctgcgtac cactggcgaa cacgaagtga
     1981 gcttccaggt tcacagcgaa gtattcgcga aagtgatcgt aaacgtagta gctgaataat
     2041 tcgttattca acgagacgta aaaacgccga ccattggtcg gcgttttgct ttctattttt
     2101 cgtcaggtat tagtttcgca agtagatcca ttcaccattc tcttgtgtcc ataagtcagg
     2161 atggtttgct ggcgttagat gcatacgatc actccttatg tctcggtcct gcggcactcg
     2221 ctcgaaacct aaacccgagt agattgctgc tgaatttgat aaggaacgca gaccaatttt
     2281 caaatcatgg ggtaaatcag aatacgcgtt tagcaatgca gcaatgatga atccgagggc
     2341 attagaaacg cctgtaacag tgcgaagttg gtcgatataa agatcgattg ttggtagttc
     2401 agatgaccag caattaggca tttgggcagg aagggttaca acgtatccta tcgtttggcc
     2461 ggtatagtct ggagtaccat aaccaggtcc caaaaccact ttgtgtattg tgtatttact
     2521 gttgggttcg aaggattcga catcttgcaa taaatatttc agttctgcgg ttaacctcgc
     2581 acccgcgtaa gctttattgt atttctgggc gtgaatatta tctaatgtag cttcatggtt
     2641 ccatccaaaa gaattatcac cattcattgt tactccatcg taagcattac acttcgttgc
     2701 taacttattg aatgcttgcc agtcagagag atctagtttg tggatctcaa cagtacgtct
     2761 gccatcgcaa ttatgatctc ttccacgatt tgacagtaat gtagcgcgtg cgtattgatg
     2821 aaattttaat tttgctggtt tgtcggtgga cgaaaaacga ggtaaatatg cggggaatga
     2881 ataaatagtt gttggtaatg tcattttatt gttgcctgtt taatgttttt acaaatatcg
     2941 cagtt
//
LOCUS       DADMHM010000298         2942 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.303, whole genome shotgun sequence.
ACCESSION   DADMHM010000298 DADMHM010000000
VERSION     DADMHM010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2942)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2942)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2942
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.303"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(48..232)
                     /locus_tag="JN125_004072"
                     /pseudo
     CDS             complement(48..232)
                     /locus_tag="JN125_004072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311258.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4102 domain-containing protein"
     gene            complement(394..468)
                     /locus_tag="JN125_004073"
     tRNA            complement(394..468)
                     /locus_tag="JN125_004073"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(433..435),aa:Arg,seq:cct)
     gene            complement(544..1476)
                     /locus_tag="JN125_004074"
     CDS             complement(544..1476)
                     /locus_tag="JN125_004074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HAY8873638.1"
                     /translation="MDNDKIDQHSDEIEVESEEKERGKKIEIDEDRLPSRAMAIHEHI
                     RQDGEKELERDAMALLWSAIAAGLSMGASLLAKGIFHVELEGVPGSFLLENLGYTFGF
                     IIVIMARQQLFTENTVTAVLPVMQKPTMSNVGLLMRLWGVVLLGNILGTGITAWAFEY
                     MPIFNEETHDAFVKIGMDVMKNTPSEMFANAIISGWLIATMVWMFPAAGAAKIVVIIL
                     MTWLIALGDTTHIVVGSVEILYLVFNGTLHWSDFIWPFALPTLAGNICGGTFIFALMS
                     HAQIRNDMSNKRKAEARQKAERAENIKKNDKNPA"
     gene            1770..2525
                     /gene="mlaA"
                     /locus_tag="JN125_004075"
     CDS             1770..2525
                     /gene="mlaA"
                     /locus_tag="JN125_004075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding lipoprotein MlaA"
                     /protein_id="HAY8873639.1"
                     /translation="MKLRLSALALGTTLLVGCASSGTDQQGRSDPLEGFNRTMYNFNF
                     NVLDPYIVRPVAVAWRDYVPQPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTR
                     FFLNTILGMGGFIDVAGMANPKLQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRD
                     DGGDMADGLYPVLSWLTWPMSVGKWTLEGIETRAQLLDSDGLLRQSSDPYIMVREAYF
                     QRHDFIANGGELKPQENPNAQAIQDDLKDIDSE"
     gene            complement(2707..2919)
                     /locus_tag="JN125_004076"
     CDS             complement(2707..2919)
                     /locus_tag="JN125_004076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005092548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873640.1"
                     /translation="MDDAKFRRDNVKEIISTLFANKVDVDHPENKYKDFKDLEDKVEK
                     RLQNRQTEYQNEINQLSAPDVNFDDI"
BASE COUNT          737 a          674 c          690 g          841 t
ORIGIN      
        1 atcttttacg gggtgaaggt aggtttcgta tgaagggtat ctgttgtctc ctgcaaagtc
       61 ataagcggat attttcctac ggtcagtatt ttttccttac cgtcaatctt gtagcgaagt
      121 tgccatacct tttcccggat acaggaacat aaaggtacag gccattacca tcgagaaggc
      181 ggtatggttt ttctttcggc tttgctgctt caatctgctt aacggtgagc atgggtaaaa
      241 atccggtggg taaaattatt ttatccactt tttacccgtc atggagtgcg gctgtcaacg
      301 atctgacgcg aaccatgacg aaccgtgaat atacggaagg cttgatattc aggggatttt
      361 gcggactggt acggatggga gcgaactgat aaatggtgtc ccctgcagga atcgaacctg
      421 caattagccc ttaggagggg ctcgttatat ccatttaact aagaggacaa tgcggcatga
      481 gtatacccgc taatggactg cggagtaagt acactgccgc tcgattgctt aaaccctcgc
      541 catttatgct gggtttttat catttttctt aatgttttcc gcacgttctg ctttttggcg
      601 tgcttctgct ttgcgcttgt tgctcatgtc gttacggatc tgtgcatgac tcattaacgc
      661 gaagataaag gtgccgccgc agatattccc cgctaaagta ggtagtgcga agggccaaat
      721 gaaatcgctc cagtgcagcg tgccgttaaa caccagatag aggatttcta cagaaccgac
      781 aacgatgtgg gtggtgtcac ccagtgcaat aagccaggtc atcaatataa tcaccacaat
      841 ctttgccgca cccgctgcag gaaacatcca aaccatagtg gcgatcagcc agccggaaat
      901 gatcgcgttg gcaaacatct cgctgggggt attcttcatc acatccatgc cgattttgac
      961 aaatgcatcg tgagtttctt cattgaagat aggcatatat tcaaatgccc atgcagtaat
     1021 acctgtcccg agaatattac ccagcagcac gacgccccat aatcgcataa gtaagccgac
     1081 gttgctcatt gtcggttttt gcatgacggg tagtaccgca gtcacggtgt tttcggtaaa
     1141 taattgctgg cgggccataa tgacgataat aaaaccaaag gtataaccga gattctccaa
     1201 caagaagctg cccggcacgc cttccagttc gacatgaaat atcccttttg ccagtaacga
     1261 agcgcccatc gacagacccg ccgcaatggc tgaccacagt agtgccattg cgtcgcgttc
     1321 cagctctttt tcaccatcct ggcggatatg ttcatgaatt gccatcgccc gggaggggag
     1381 tcgatcttca tctatttcta tttttttgcc gcgctctttt tcttcgctct caacttcaat
     1441 ttcgtcgctg tgttgatcaa ttttgtcgtt gtccatggtc tcttctcttg aattagcacg
     1501 tatagctaaa gcgtagcggc ttttttgctc gcaactggcg ggagttactc tgaaaatgta
     1561 gaaaaggccg cgtttgcctt tttctgtttc tatagaatca agtagcctac agggcggcga
     1621 ttaccaagct atgatcaaat cagcaaatca gggcgtctgg acatcagttg acgtgctgtt
     1681 acaatcgccc acacctaaac aggcggatac ggtatcgttc cgtcatggat ggcaaactgc
     1741 ataagccata aaaaaacagg gagacattta tgaagcttcg cctgtcggcg cttgctctgg
     1801 gaactacgct tctggtgggg tgtgcgagtt ccggtacaga tcagcaaggg cgttctgacc
     1861 cgttagaagg gttcaaccgc accatgtaca acttcaactt caatgtatta gacccgtata
     1921 ttgttcgacc ggtcgctgtc gcctggcgtg attatgttcc gcaaccggcg cgtaacggtt
     1981 tgagcaactt taccggcaac cttgaagaac ctgcggtgat ggttaactac ttcttgcagg
     2041 gcgaccctta tcaggggatg gtccacttta cccgcttttt cctgaacacc attttgggga
     2101 tgggcggctt tattgatgtt gcagggatgg cgaacccgaa actgcaacgg actgaacctc
     2161 accgcttcgg tagtacgctt ggtcattatg gcgtgggtta tgggccttac gttcagttac
     2221 cgttctacgg tagcttcacg ctgcgtgatg acggtggtga tatggcggat ggtctttacc
     2281 cggttctttc ctggctgacc tggccgatgt ctgtgggtaa atggacgctt gaagggatcg
     2341 aaacccgcgc tcagctgctg gattccgatg gtctgctgcg tcagtcgtcc gatccttata
     2401 ttatggtgcg cgaagcgtac ttccagcgtc atgatttcat cgctaatggc ggcgaactca
     2461 aaccgcagga aaatccgaac gcacaagcga ttcaggatga tttaaaagat attgattctg
     2521 aataagaaac aaataaaaaa ggtgagtcgc aaaactcacc ttttttgttg ttatccctca
     2581 attaccacaa gtaaaaggag ataaaccgac aatgacccgg acgtaatgat gtaaaaatac
     2641 tgatgttcgt cactgactat ttccgatatt caggcgttga aaaatcaaaa aactggaaaa
     2701 ataattttaa atatcatcaa aattaacatc tggcgcagat agttgattaa tttcattttg
     2761 atattccgtc tggcgatttt gaagcctttt ttcaacttta tcttcgagat ccttaaagtc
     2821 tttgtattta ttttcaggat ggtcaacgtc aactttgtta gcgaataaag tagaaattat
     2881 ttcttttaca ttatcgcgtc taaattttgc atcgtccact tgaaaattat atcttattgc
     2941 tc
//
LOCUS       DADMHM010000299         2881 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.304, whole genome shotgun sequence.
ACCESSION   DADMHM010000299 DADMHM010000000
VERSION     DADMHM010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2881)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2881)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2881
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.304"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..342
                     /locus_tag="JN125_004077"
     CDS             <1..342
                     /locus_tag="JN125_004077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000633896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glycosidase"
                     /protein_id="HAY8873641.1"
                     /translation="YGSEIGIDGFKSMTLENNRKCMIWDENKQDLELRQFIRWLIRLR
                     KKHPQWCEASIQWKDVEHPTVIAYQRDNITFFLNNSEDTANFIYDGRSMEISGFSYEI
                     EGLPAADLYDF"
     gene            364..1161
                     /locus_tag="JN125_004078"
     CDS             364..1161
                     /locus_tag="JN125_004078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000582547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HAY8873642.1"
                     /translation="MIIDAHTHIGDFVKISMPEDVFLASLDKYNIDFALCSCGSAVEV
                     DHDQNPIPDEDQVTQHDNNERMLRLVRQHAKRIGAFMWIKPRLESCDQDFEDMIASNR
                     DIIYGIKVHPYHSKMAFNSEKVQDYIRLAQKYDLPVVSHTSNDYESSPQLFYEMALKY
                     PDVNFVMCHMGLATDNQEAIELIAKLPNLYGDTVWVRADMVYQAIKICGSDKILFGTD
                     NPINGLDTYNDDDFYNKYFTELKSKLTQSEFEQLMFTNAKKNFKIKI"
     gene            1254..2079
                     /locus_tag="JN125_004079"
                     /pseudo
     CDS             1254..2079
                     /locus_tag="JN125_004079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001342239.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
     gene            2150..>2881
                     /locus_tag="JN125_004080"
     CDS             2150..>2881
                     /locus_tag="JN125_004080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005138488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NGG1p interacting factor NIF3"
                     /protein_id="HAY8873643.1"
                     /translation="MVAVSQPTVDKIIFGAEATLINKIGTCWIASMDVLRKAVFEGVN
                     IIITHETTFYSYADLEGDDLEFSWARKIMDYTRGELSYLKIIEQKKEFLHKNNLVIIR
                     CHDVMDREPTFGMSKALAQQLELDVTNIVASDEMYCVYAIEPDSVINITKRFAKNLKI
                     YNLPGIQFYGDKARVVRTVGIGAGCFCDPIQYMEYQADYYITINDSIKTWVQTQYSKD
                     SGLPMAVIGHSVAEEAGMRRLASYLD"
BASE COUNT          878 a          461 c          616 g          926 t
ORIGIN      
        1 tacggtagcg aaataggaat tgatggtttt aaatcaatga cgcttgagaa taatagaaaa
       61 tgtatgatat gggatgaaaa caaacaagat cttgaattac ggcaatttat acgttggtta
      121 atacgtctac gtaaaaaaca tccacaatgg tgtgaggcat caatacaatg gaaagatgtt
      181 gaacatccta cggtgatcgc ttatcaacgc gataacatca ctttcttctt aaataatagt
      241 gaagatactg ccaactttat ttatgacgga agaagtatgg agatctccgg tttcagttat
      301 gaaattgaag gtttacctgc tgctgatctt tatgattttt aaatttcaat taggatgttt
      361 gttatgataa ttgatgcaca cactcatatt ggtgattttg tgaaaatcag catgccagaa
      421 gatgtttttc tggcatctct ggacaagtat aatattgatt ttgcgttatg ttcctgtgga
      481 tctgctgttg aagttgacca tgaccagaac ccgattccgg atgaagatca agttacacag
      541 catgataaca atgaacgtat gctcagactt gttcgtcaac atgcaaagcg aattggcgcg
      601 tttatgtgga ttaagcctcg tctggaaagt tgtgatcaag actttgaaga tatgattgcc
      661 agcaatcgag atatcattta tggcatcaaa gttcaccctt atcattcaaa aatggctttc
      721 aactcagaaa aagttcagga ttatatacgc cttgctcaaa aatatgatct cccggtagtt
      781 agccatactt ctaatgatta tgaatccagc ccacagttat tttatgagat ggcacttaag
      841 tatccagacg tgaattttgt tatgtgtcat atggggctcg cgacagataa tcaggaagca
      901 atcgaattga ttgcaaaact tcctaatctc tatggcgata ctgtgtgggt tagggcggat
      961 atggtttacc aggcgataaa aatctgtggt agtgataaga ttttattcgg taccgataat
     1021 cctattaatg ggctggatac gtacaatgat gatgattttt ataataagta ttttactgaa
     1081 ttaaaaagta aattaacgca aagtgagttt gaacaactta tgtttaccaa tgcgaaaaaa
     1141 aattttaaga taaaaatata gttattagtc atttctaagt gctccccata tagaatgtgg
     1201 taggggagtg cttagatgtt atatttcatt ttgcattgag gttaatttaa atcatgaacg
     1261 atattgagaa ctatgggaat cgctatcatg tgttgcaatc ttttcctatg ccacaattgg
     1321 cgagtagtcg cgaaataaga atattactgc ctgcgttcta ttatgaatct gatatcagtt
     1381 accctgtaat atatatgcac gatgggcaaa atttatttga taaatctgta tcttttggtc
     1441 cacatgtatg ggatatacct gaggcggtag atgctttttt ctcaaattca caatacgacg
     1501 gtgttatcat tgtggggatt gataacgcat cgtctcatgg taaattcagc cgtatggatg
     1561 agtattctcc atggccgcga aacacatctt ttcccttacc tggctgggac cctgctgtgg
     1621 attatagtgg aggaaaaggc gtttattgtg aatacgctca agaactatgt tgacagtaat
     1681 tttagaactc tcccagatcg taataataca gcgatagcag gtagttctat gggtgcgtac
     1741 atcagtttgt ttgccgcaat tcttcgtcag gacgtttttt caaaagttgg cgttttttcg
     1801 ccggcactat ggttcaatga cagcgcaatg ctgaatttta ttcaggaaaa caacatcgtt
     1861 gaagatctta ctgtatatct cgatgtcggt acgcaggaaa ccagtggtat gcgcgaagac
     1921 tttcctgaag tctatatttc cggtgctgaa aaattatgcg tgagtctccg taaacaacgc
     1981 aatgtaacta tagattatca tttatgggga ggtgataccc actctgagtc tgcatgggca
     2041 aaacgtttcc cagaaatgtt gaaattattt tattgctgat gaaacctgtg aaggatgttg
     2101 aatgcatcat attaaaacag ccgcggatct taattgtttt ttaaattcaa tggttgctgt
     2161 ttcgcaacca acagttgata aaattatttt tggtgctgag gcgacactta ttaataaaat
     2221 tgggacctgc tggattgcct caatggatgt tttaagaaag gctgtttttg aaggtgtcaa
     2281 tatcattatt acacatgaga ctacatttta ttcttatgct gatctggagg gtgacgatct
     2341 tgagttttca tgggccagaa aaataatgga ttatactcgc ggtgaactca gttatttaaa
     2401 aataattgag caaaaaaagg agtttttgca taaaaataat ttggtaatca ttcgttgcca
     2461 tgatgtcatg gatcgagagc ctacgttcgg aatgtctaag gctttggctc agcagttaga
     2521 actggatgtt acaaatattg ttgcttctga tgagatgtac tgtgtatatg ctatagaacc
     2581 tgacagtgtc attaacatta ccaaacgttt tgccaaaaat ttgaaaatat ataatcttcc
     2641 tggcattcaa ttttatggag ataaagccag agtagtcaga actgttggca ttggggcagg
     2701 ctgtttttgt gatccaatac aatatatgga atatcaggct gattattata ttacgattaa
     2761 cgattcaatt aaaacatggg tgcagacaca atactccaaa gatagtggct taccgatggc
     2821 agttattgga catagtgttg cagaggaagc gggtatgcga cgtcttgcaa gctatttaga
     2881 t
//
LOCUS       DADMHM010000300         2839 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.305, whole genome shotgun sequence.
ACCESSION   DADMHM010000300 DADMHM010000000
VERSION     DADMHM010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2839)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2839)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2839
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.305"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            1..134
                     /locus_tag="JN125_004081"
                     /pseudo
     CDS             1..134
                     /locus_tag="JN125_004081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309413.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="DUF3440 domain-containing protein"
     gene            384..1250
                     /gene="ospB"
                     /locus_tag="JN125_004082"
     CDS             384..1250
                     /gene="ospB"
                     /locus_tag="JN125_004082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspB"
                     /protein_id="HAY8873644.1"
                     /translation="MNLDGVRPYCRIVNKKNESISDIAFAHIIKRVKNSSCTHPKAAL
                     VFLGEKGFCDSNDVLSIMGQQIPRVFKNKMLYDYVFKNEKSKNDFLKMAESWLPQSEP
                     IVINNDDDALNAAAYFSVKKAKIKTVNDTDFKEYNKVYILGHGSPGSHQLGLGSELID
                     VQTIISRMKDCGILNVKDIRFTSCGSADKVAPKNFNNAPAESLSCILNSLPFFKEKES
                     LLEQIKKHLENDESLSDGLKISGYHGYGVHYGQELFPYSHYRSTSIPADPEHTVKRSS
                     QKKTFIINKELD"
     gene            1579..2319
                     /locus_tag="JN125_004083"
     CDS             1579..2319
                     /locus_tag="JN125_004083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HAY8873645.1"
                     /translation="MKTKNFLLFCIATNMILIPSANALKAEGFLTQQTSPDSLSILPP
                     PPAEDSVVFQADKAHYEFGRSLRDANRVRLASEDAYYENFGLAFSDAYGMDISRENTP
                     ILYQLLTQVLQDSHDYAVRNAKEYYKRVRPFVIYKDATCTPDKDEKMAITGSYPSGHA
                     SFGWAVALILAEINPQRKAEILRRGYEFGESRVICGAHWQSDVEAGRLMGASVVAVLH
                     NTPEFTKSLSEAKKEFEELNTPTNELTP"
     gene            complement(2679..>2839)
                     /locus_tag="JN125_004084"
     CDS             complement(2679..>2839)
                     /locus_tag="JN125_004084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="T3SS effector OspC family protein"
                     /protein_id="HAY8873646.1"
                     /translation="LEYFINNGLVDVNKKFQKANSGDTMLDNAMKSKDSKMIDFFIKK
                     WSGIRQTI"
BASE COUNT          931 a          516 c          527 g          865 t
ORIGIN      
        1 cggtaagaga agttcatcat acttggcgca gttacgcgat gtttctgcta gaggtgatgc
       61 cgtaaagaac ggcagaacat taccggaaca agatagcggt ctacctgcac tggtatcaga
      121 cccggggctt ccccggatga tctccacggt actttaggta ctgtgtctat attatgtagg
      181 taggatcaat taactttgta gttgaaattc tttcattgaa ataatgaata aaaaagacaa
      241 accgcattaa acaatgccag aatataattg catttttgtt ccgttttttt aaatcatagt
      301 atacaaagaa gcttgcatac tatatgaaaa tataacaccc tttactatga tgtttataaa
      361 acaatatatg gagtcatgta ggtatgaatt tagatggtgt tagaccatac tgtagaatag
      421 tcaataaaaa gaatgaaagc atatcagata ttgcatttgc acatataata aaaagggtaa
      481 aaaattcatc atgtactcac ccaaaagcag cattggtttt tttaggagag aaaggttttt
      541 gtgatagcaa tgatgttcta tctattatgg gacaacaaat accaagagta tttaagaaca
      601 agatgttata tgattatgtt tttaaaaatg aaaaaagtaa aaatgatttt ctaaaaatgg
      661 ctgaatcatg gctaccacag agtgaaccaa tagtaataaa taatgatgat gacgcattga
      721 atgctgctgc ttatttttct gtaaaaaaag cgaaaataaa aacagtaaac gatactgatt
      781 ttaaagagta taataaggtt tatattcttg ggcacggtag tcctggttct catcaattag
      841 gccttggttc ggaacttatt gatgtacaaa caatcatttc aagaatgaaa gactgtggta
      901 ttctaaatgt gaaagatatc cgttttactt catgcggctc cgctgataaa gtggctccta
      961 aaaattttaa caatgcccct gctgaaagtc tttcttgtat ccttaactct ctgccttttt
     1021 ttaaggaaaa agaatctttg ctagagcaga taaaaaaaca ccttgaaaac gatgagtcat
     1081 tgagtgatgg tctaaaaata tccggctatc atggatatgg agttcactat ggtcaagagc
     1141 tttttcccta ctcacattat cgttcaactt caattcctgc tgatccggag catacagtaa
     1201 aaagaagctc tcagaaaaag acttttatta ttaataaaga actggattag tataaaattt
     1261 ttaacctata gttaattgtt tgcatttaag atgaagttat tttttcttta gtagaaaagt
     1321 gcttccctat gagggaaaat cacaaatcat cataatacag agacaaaacg atacgaacaa
     1381 atagataaaa aacatcattc ttttaccaca ttatttttcg tgaatatgaa aaataatgtt
     1441 attactttaa tataagacta ttttttgttt ttccatcact ctgttcaaat ttttccgcat
     1501 gacttgtgtt ttttgtaaca cagctcgttt tttacagctg accaaaatca tcaattaatt
     1561 atgctaagga aataaattat gaaaaccaaa aactttcttc ttttttgtat tgctacaaat
     1621 atgattttga tcccctcagc aaatgctctg aaggcagaag gttttctcac tcaacaaact
     1681 tcaccagaca gtttgtcaat acttccgccg cctccggcag aggattcagt agtatttcag
     1741 gctgacaaag ctcattatga attcggccgc tcgctccggg atgctaatcg tgtacgtctc
     1801 gctagcgaag atgcatacta cgagaatttt ggtcttgcat tttcagatgc ttatggcatg
     1861 gatatttcaa gggaaaatac cccaatctta tatcagttgt taacacaagt actacaggat
     1921 agccatgatt acgccgtgcg taacgccaaa gaatattata aaagagttcg tccattcgtt
     1981 atttataaag acgcaacctg tacacctgat aaagatgaga aaatggctat cactggctct
     2041 tatccctctg gtcatgcatc ctttggttgg gcagtagcac tgatacttgc ggagattaat
     2101 cctcaacgta aagcggaaat acttcgacgt ggatatgagt ttggagaaag tcgggtcatc
     2161 tgcggtgcgc attggcaaag cgatgtagag gctgggcgtt taatgggagc atcggttgtt
     2221 gcagtacttc ataatacacc tgaatttacc aaaagcctta gcgaagccaa aaaagagttt
     2281 gaagaattaa atactcctac caatgaactg accccataaa gctggacagc ctgtatcagg
     2341 ctatggaggg cccatagaca aatctaccct atatgagcat aggaggagtc tatgggcaca
     2401 ccacgtttta cccctgaatt taagggatta ctggaaaggc tgggacatat ccctccggca
     2461 gaagcagaaa aagcttatta tgctgccatc ggaaacgatg atctggcaac ctgagttcac
     2521 agataaaaca ttctctagga aactcggggc ggttccgttc accacatgca atgtggtgtt
     2581 gcaggggaac ggtctgcacc atcccctatg tcgatcaata taacagaaat gacaacttca
     2641 gattcagggc acaacctaaa tatattttag gtcacctctc aaatcgtttg cctgataccg
     2701 ctccattttt taataaaaaa atcaatcatt tttgaatctt tgcttttcat tgcattgtca
     2761 agcatagtgt ccccactatt tgctttttga aattttttgt ttacatcaac caatccatta
     2821 ttgataaaat attctagca
//
LOCUS       DADMHM010000301         2826 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.306, whole genome shotgun sequence.
ACCESSION   DADMHM010000301 DADMHM010000000
VERSION     DADMHM010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2826
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.306"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..959
                     /locus_tag="JN125_004085"
     CDS             <1..959
                     /locus_tag="JN125_004085"
                     /EC_number="1.1.1.58"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tagaturonate reductase"
                     /protein_id="HAY8873647.1"
                     /translation="IIIPCELIDYNGDALRELVLRYAQEWALPEAFIQWLDQANSFCS
                     TLVDRIVTGYPRDEVAKLEEELGYHDGFLDTAEHFYLFVIQGPKSLATELRLDKYPLN
                     VLIVDDIKPYKERKAAILNGAHTALVPVAFQAGLDTVGEAMNDAEICAFVEKAIYEEI
                     IQVLDLPRDELESFASAVTGRFRNPYIKHQLLSIALNGMTKFRTRILPQLLAGQKANG
                     TLPARLTFALAALIAFYRGERNGETYPVQDDAHWLERYQQLWSQHRDRVIGTPELVAI
                     VLAEKDHWEQDLTQVPGLVEQVANDLDAILEKGMREAVRPLC"
     gene            1156..2070
                     /locus_tag="JN125_004086"
     CDS             1156..2070
                     /locus_tag="JN125_004086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416037.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873648.1"
                     /translation="MIVRPQQHWLRRIFVWHGSVLSKISSRLLLNFLFSIAVIFMLPW
                     YTHLGIKFTLAPFSILGVAIAIFLGFRNNAGYARYVEARKLWGQLMIASRSLLREVKT
                     TLPDSASVREFARLQIAFAHCLRMTLRKQPQAEVLAHYLKTEDLQPVLASNSPANRIL
                     LIMGEWLAVQRRNGQLSDILFISLNDRLNDISAVLAGCERIAYTPIPFAYTLILHRTV
                     YLFCIMLPFALVVDLHYMTPFISVLISYTFISLDCLAEELEEPFGTENNDLPLDAICN
                     AIEIDLLQMNDEAEIPAKILPDRHYQLT"
     gene            complement(2074..2805)
                     /gene="tam"
                     /locus_tag="JN125_004087"
     CDS             complement(2074..2805)
                     /gene="tam"
                     /locus_tag="JN125_004087"
                     /EC_number="2.1.1.144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000545752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trans-aconitate 2-methyltransferase"
                     /protein_id="HAY8873649.1"
                     /translation="MHFSAERSRPAVELLARVPLENVEYVADLGCGPGNSTALLQQRW
                     PAARITGIDSSPAMIAEARSALPDCQFVEADIRNWQPVQALDLIFANASLQWLPDHYE
                     LFPHLVSLLNPQGVLAVQMPDNWLEPTHVLMREVAWEQNYPDRGREPLAGVHAYYDIL
                     SEAGCEVDIWRTTYYHQMPSHQAIIDWVTATGLRPWLQDLTESEQQLFLKRYHQMLEE
                     QYPLQENGQILLAFPRLFIVARRME"
BASE COUNT          662 a          714 c          718 g          732 t
ORIGIN      
        1 ggatcatcat tccgtgtgag ttgattgact acaatggcga cgcgttgcgt gaactggtgc
       61 tgcgctatgc gcaagagtgg gcactgccag aagcatttat tcaatggctg gatcaggcta
      121 acagcttctg ttctacgctg gtggaccgta tcgttaccgg ttatccgcgc gatgaagtgg
      181 ctaaactgga agaagaactg ggttatcacg atggttttct cgacaccgct gaacactttt
      241 acctgtttgt gattcagggg ccgaaatcct tagcgactga gctgcgcctg gacaaatatc
      301 cgctcaatgt gctgattgtt gacgatatta aaccgtataa agaacgcaaa gcggcaatcc
      361 tcaacggtgc gcacaccgcg ctggtgccgg tggcgttcca ggcagggctg gataccgtag
      421 gtgaagcgat gaacgatgct gaaatttgcg cattcgttga aaaagccatc tacgaagaaa
      481 ttattcaggt actggatttg cctcgtgatg aactggaatc tttcgccagt gcagtcaccg
      541 ggcgtttccg taacccgtac attaagcatc agctgctgtc tatcgcgctc aacggtatga
      601 ccaagttccg cacccgcatc ctgccgcagc tgctggcagg gcagaaggca aacggcacac
      661 ttccggcgcg ccttactttc gcattagcgg cattgattgc cttctatcgc ggtgagcgta
      721 acggagaaac atatccggta caggacgatg cacactggct ggaacgttat cagcaactct
      781 ggagccagca tcgtgaccgt gttatcggca ccccggaact ggtagcgatt gttttggcag
      841 aaaaagacca ctgggagcag gacctgacgc aagtgcctgg tctggtcgag caggttgcta
      901 atgacctgga tgcgattctt gaaaaaggga tgcgcgaagc tgtacgcccg ttgtgctaat
      961 actctgaacc cggtttcgac cgggtttctt atttcactat attagttaca acattctata
     1021 tgcctttatc attaacaggt gccacatgca gcgcctgtta atgttgtaag cttgtaggta
     1081 atttgtaagt agcgtcttga gaatgtgatc gtaatcacgt ttaatagggc gacttttcca
     1141 cgcctgaaga taaccatgat tgttcgtcca caacaacact ggctgcgccg tatttttgtc
     1201 tggcacggct cagtattatc caagatatcc tcgcgcttac tactcaattt tctcttttct
     1261 atcgctgtta ttttcatgct gccctggtac acgcatctgg gcatcaaatt caccctcgca
     1321 ccgttcagca ttctcggtgt cgccatcgcc atttttcttg gttttcgtaa taatgccggg
     1381 tacgcccgtt acgttgaagc gcgaaaactt tggggacagt tgatgattgc ctcacggtcg
     1441 ttactacgtg aggtaaaaac gacattgccg gattcggcaa gtgtaaggga gtttgccagg
     1501 ctgcaaatcg ccttcgccca ctgtttacgc atgacattac gcaaacagcc acaggcggaa
     1561 gtgctggctc attatctcaa gactgaagat cttcagcctg tactggcttc gaactctcca
     1621 gctaaccgta tcttgttaat aatgggggag tggttggcgg ttcagcgccg caatgggcag
     1681 ctttcagata tcctgtttat tagcctcaac gatcggctta atgatatttc agcggtcctg
     1741 gcaggatgcg agcgcattgc ctatacgcca attccctttg cctacaccct gattttgcat
     1801 cgtactgttt atctgttttg tatcatgctg ccgttcgcgc tggtcgtgga cctgcattac
     1861 atgacgcctt ttatctctgt gctgatttcc tacactttta tttcgctgga ttgtctggcg
     1921 gaagaactgg aagaaccgtt cggtactgaa aacaatgatt taccgctgga tgccatctgc
     1981 aacgctattg aaattgacct cttacagatg aacgatgaag ccgaaattcc agcaaaaatt
     2041 cttcccgatc gtcattacca gctgacgtga tatttactcc atacgccggg caacaataaa
     2101 aagacgcgga aatgccagca gtatctgtcc gttctcttgc agtggatact gctcttccag
     2161 catctgatgg tagcgcttaa gaaaaagctg ctgttcgctc tcggtcagat cctgtaacca
     2221 cggacgtaat ccagtggcgg tcacccaatc gataatcgcc tggtgcgacg gcatctggtg
     2281 atagtaggtg gttcgccaga tatcgacctc acatccggct tcgctcaaaa tatcgtagta
     2341 agcatgaacg ccagccaacg gctcacgccc gcgatccggg tagttttgtt cccaggcaac
     2401 ttcgcgcatg agcacatggg tcggctccag ccagttatct ggcatctgta ctgccagcac
     2461 gccctgcgga ttaagtaaag aaaccaagtg aggaaacaat tcgtagtggt caggcagcca
     2521 ttgcagtgag gcattagcaa aaatcagatc gagtgcctgt accggttgcc agttgcggat
     2581 gtctgcttcc acgaactggc agtctggcaa agcactgcgc gcttcagcaa tcatcgccgg
     2641 agacgagtcg atgcctgtta tcctggccgc aggccaacgt tgttgtagaa gggcggtgct
     2701 gttacctggg ccacagccaa gatcggcgac atattcgaca ttttccagcg gcactctggc
     2761 aagcagctcc accgccggac gcgatcgttc agcggaaaag tgcaaatata aagaggggtt
     2821 ccagtc
//
LOCUS       DADMHM010000302         2815 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.307, whole genome shotgun sequence.
ACCESSION   DADMHM010000302 DADMHM010000000
VERSION     DADMHM010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2815)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2815)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2815
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.307"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..98)
                     /locus_tag="JN125_004088"
     CDS             complement(<1..98)
                     /locus_tag="JN125_004088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3313 domain-containing protein"
                     /protein_id="HAY8873650.1"
                     /translation="MRTTSFAKVAALCGLLALSGCASKITQPDKYSG"
     gene            complement(401..994)
                     /gene="tehB"
                     /locus_tag="JN125_004089"
     CDS             complement(401..994)
                     /gene="tehB"
                     /locus_tag="JN125_004089"
                     /EC_number="2.1.1.265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tellurite resistance methyltransferase TehB"
                     /protein_id="HAY8873651.1"
                     /translation="MIIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRN
                     SLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILST
                     VVLMFLEAKTIPGLIANMQRCTKLGGYNLIVAAMDTADYPCTVGFPFAFKEGELRRYY
                     EGWERVKYNEDVGELHRTDANGNRIRLRFATMLARKK"
     gene            complement(991..1983)
                     /gene="tehA"
                     /locus_tag="JN125_004090"
     CDS             complement(991..1983)
                     /gene="tehA"
                     /locus_tag="JN125_004090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dicarboxylate transporter/tellurite-resistance
                     protein TehA"
                     /protein_id="HAY8873652.1"
                     /translation="MQSDKVLNLPAGYFGIVLGTIGMGFAWRYASQVWQVSHWLGDGL
                     VILAMIIWGLLTSAFITRLIRFPHSVLAEVRHPVLSSFVSLFPATTMLVAIGLVPWFR
                     PLAVCLFSFGVVVQLAYAAWQTAGLWRGSHPEEATMPGLYLPTVANNFISAMACGALG
                     YTDAGLVFLGAGVFSWLSLEPVILQRLRSSGELPTALRTSLGIQLAPALVACSAWLSV
                     NGGEGDTLAKMLFGYGLLQLLFMLRLMPWYLSQPFNASFWSFSFGVSALATTGLHLGS
                     GSENGFFHTLAVPLFIFTNFIIAILLIRTFALLMQGKLLVRTERAVLMKVEDKE"
     gene            2176..2815
                     /locus_tag="JN125_004091"
                     /pseudo
     CDS             2176..2815
                     /locus_tag="JN125_004091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001735206.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          800 a          681 c          643 g          691 t
ORIGIN      
        1 ccagaatatt tatctggctg ggtgatttta gaggcacaac cagacagagc caacaagccg
       61 cataaagctg caactttcgc aaatgatgtg gtacgcatga atagtttcct gagatgatta
      121 tattactttt taagttatag caaaaagcgc cgcttcgtgt tgtggcaaaa aaagtgttgg
      181 tgaaaataaa tttttcagcc ccttttcaga cgacatagtc aatgccgaaa aaggggctaa
      241 gtcaatcatc agtagttaaa tttcagtaag ttaagctgct aaaaaacttc gactactgtg
      301 attaatttca catcccttcg ataaaaaata tgcttaccga aaagaagaac agtaaatcat
      361 ctcagcgtgg ggaattttca cgcgccttat tcttagcggg tcatttttta cgtgccagca
      421 tcgtggcgaa acgcagtcta atacgattac cgttggcgtc ggtgcggtgc agctcgccga
      481 cgtcttcatt gtatttcacc ctctcccagc cttcgtaata tcgacgtaat tctccctctt
      541 tgaaggcaaa cgggaagccg acggtacatg gataatcagc ggtatccatc gccgccacaa
      601 tcaggttgta accaccaagt ttagtgcaac gttgcatatt ggcaatcagc cctgggatgg
      661 ttttagcctc aaggaacatc agtaccacag tcgaaagaat aaaatcgtac tgtctatcaa
      721 atgtgaggtt attcagatca acgactcggg tgtgtaaatt atccagattt tcaatggatt
      781 taatgcgctc tacattggcg atactcatgg catttttatc ccatgcgtca acatcataac
      841 cattggctgc caggtaaaga ctgttacgac cattgccaca gcccagatcc agcgttttac
      901 ccggtttaac cactttcacc gcttccagta cttcagagtg tgtgcgggtt aattcatatt
      961 tatcagtaaa atagttttcg tcacgaatga tcattctttg tcctctactt tcattaaaac
     1021 agcgcgctcg gttctgacta acaatttccc ctgcatcaga agcgcaaaag tacggatgag
     1081 cagtattgca ataataaaat tggtaaagat aaacagcggt accgccagcg tatggaaaaa
     1141 tccattttcg ctgccactcc ccagatgcaa accggtggtt gccagtgcag atacgccgaa
     1201 cgagaaactc cagaatgaag cattaaatgg ctgggagaga taccatggca tcagacgtag
     1261 cataaacagc agttgcagca gtccataacc aaaaagcatt ttcgccagcg tatcaccctc
     1321 gccgccgttg acgctcaacc aggcactaca ggccaccagc gcaggagcga gctgaatgcc
     1381 gagtgatgtc cgcagtgccg tgggtaattc tcccgaactg cgcagacgct gcaagatcac
     1441 cggttcaagg cttagccatg agaaaacgcc tgcgcctaaa aacaccagac cggcgtcggt
     1501 gtagcccaac gcaccacagg ccattgcgct gataaagttg ttggcaactg tcggcagata
     1561 cagtccaggc atggtagctt cttcagggtg agatccgcgc cataatcccg cagtttgcca
     1621 ggcggcataa gccaactgaa ccacgacacc aaaactgaac aggcacaccg ccagtgggcg
     1681 aaaccacgga accaaaccaa tcgccaccag catcgtcgtt gccggaaaca aactcacaaa
     1741 actgctcagc actggatggc gaacttccgc cagcacgcta tgcggaaagc gtatgagtcg
     1801 ggtaataaat gcgctagtta ataatcccca gatgatcatc gccagaatca ccagcccatc
     1861 ccctaaccag tggctgacct gccaaacctg gctggcatag cgccaggcaa atcccatccc
     1921 tatcgtcccc aacacaatac caaagtagcc tgccggcaaa ttgagcactt tatcgctctg
     1981 catcttctta ctcattttgt ttaatttata aagtatattt gaaatgcatt ttatggaatt
     2041 ttctcgagca tagccagagc cgcagaattt gctacggtta tagtaagtca cctgtgagaa
     2101 aacgctatgc gcaaatatcg tctaagtgaa gaacagcgag cctttagtta tcaggaagat
     2161 ggcacttaaa aaagtgtgtt attacggcag attatcgcca ttagcgattt taacgatgtg
     2221 atagcaggaa ccgctggcgg ctggatcgat cgcgaaacgg tgttagcata ggaaggaaat
     2281 tgctggattt acgaccagaa tgctattgcg ttcggcggaa cggtgatttc tggtaatacg
     2341 cgtatcaccg gcaccagcgt gctgtgggga gaggtttacg caacggataa cgtctggatc
     2401 gataatagtg aaatcagtca gggtgcatat ataagtgaca gcgtcaccat tcatgactca
     2461 ttagtttacg ggcaatgtag aatatttggt cacgccttaa ttgatcaaca ttctatgatc
     2521 gtcgccgcac aaggcttaac gcccgaccat caactcctgc tccaaattta tgatcgcgca
     2581 agggttagcg cctcgcgtat tgtccaccag gcacaaattt atggcgatgc cgtcgtccgg
     2641 tatgctttta ttgaacatcg cgccgaagtt tttgattttg ccagtgttga aggtaatgaa
     2701 gagaacaacg tctggctatg cgattgcgct aaagtctacg gtcacgcgca ggtgaaagct
     2761 ggcatagaag aagatgccat tccgacgatt cattacagtt cgcaggtggc ggaat
//
LOCUS       DADMHM010000303         2784 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.308, whole genome shotgun sequence.
ACCESSION   DADMHM010000303 DADMHM010000000
VERSION     DADMHM010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2784)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2784)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2784
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.308"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..253)
                     /locus_tag="JN125_004092"
     CDS             complement(<1..253)
                     /locus_tag="JN125_004092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310537.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873653.1"
                     /translation="MMSNVKKKDVPLISISLVAILFIAAALSLFPQQSADAANAIYTF
                     VTRTLGSAVQVLVLLAMGLVIYLATSKYGNIRLGEGKPEY"
     gene            complement(503..1588)
                     /gene="dmlA"
                     /locus_tag="JN125_004093"
     CDS             complement(503..1588)
                     /gene="dmlA"
                     /locus_tag="JN125_004093"
                     /EC_number="1.1.1.83"
                     /EC_number="1.1.1.85"
                     /EC_number="1.1.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multifunctional
                     D-malate/3-isopropylmalate/tartarate dehydrogenase"
                     /protein_id="HAY8873654.1"
                     /translation="MMKTMRIAAIPGDGIGKEVLPEGIRVLQAAAERWGFDLSFEQMG
                     WASCEYYSHHGKMMPDDWHEQLSRFDAIYFGAVGWPDTVPDHISLWGSLLKFRREFDQ
                     YVNLRPVRLFPGVPCPLAGKQPGDIDFYVVRENTEGEYSSLGGRVNEGTEHEVVIQES
                     VFTRRGVDRILRYAFELAQSRPRKTLTSATKSNGLAISMPYWDERVEAMAENYPEIRW
                     DKQHIDILCARFVMQPERFDVVVASNLFGDILSDLGPACTGTIGIAPSANLNPERTFP
                     SLFEPVHGSAPDIYGKNIANPIATIWAGAMMLDFLGNGDERFQQAHNGILAAIEEVIA
                     HGPKTPDMKGNATTPQVADAICKIILR"
     gene            1691..2614
                     /locus_tag="JN125_004094"
                     /pseudo
     CDS             1691..2614
                     /locus_tag="JN125_004094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310535.2"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
BASE COUNT          711 a          676 c          699 g          698 t
ORIGIN      
        1 tgtattccgg ttttccttcg ccaagacgaa tattgccgta tttactggtg gctaaataaa
       61 tcaccagtcc cattgccagc aaaaccaata cctgtacggc ggaacctaac gtacgcgtaa
      121 caaaagtgta tattgcgttg gccgcgtcgg ccgattgttg tgggaaaagg cttaatgcag
      181 ctgcgatgaa aagaatggcc accaggctga tgcttatcag cggcacatct tttttcttaa
      241 cattgctcat catgagtcat ctcctaggca taaaagcccg tctctggctt ttgccagttg
      301 taattatttg cagggtaatg agttgtatgt tgtgtttaac aaattgatta tttgaatatt
      361 acataaatta aacaattaag aatacggaaa gccataaaac acgaaacgga aacaataaaa
      421 ggtgaaatga cgcaggttat ttactgcaaa gaacgaataa aaaaacgcgt cagtgacgcg
      481 gttcaaataa actggtttga ccttaacgca aaataatttt gcaaatcgcg tcggcaacct
      541 gtggcgtggt ggcattgcct ttcatatcag gtgttttcgg cccgtgagca atcacttctt
      601 caattgctgc cagaataccg ttatgcgctt gctggaaacg ctcatcgcca ttgccgagaa
      661 aatcgagcat cattgccccg gcccaaatcg tggcgatagg gttagcaata tttttcccgt
      721 agatatccgg cgcggaaccg tggacaggct cgaagagcga cgggaaagtg cgttccggat
      781 tcaggttggc ggatggggca atgccaatgg tgccggtgca ggccgggcca agatcggaaa
      841 ggatatcgcc aaacaaattg gacgccacca ccacatcgaa gcgttccggc tgcatcacaa
      901 aacgcgcgca gagaatatca atatgctgct tgtcccagcg gatctccggg taattctcgg
      961 ccattgcttc cactcgctca tcccagtacg gcatgctgat ggctaaaccg ttcgatttag
     1021 tggcagaagt tagcgtctta cgtgggcggc tttgcgcaag ttcgaaggca taacgcaaaa
     1081 tgcgatcgac accacgacgt gtaaataccg attcctgaat gacgacttca tgctctgtac
     1141 cttcattcac tctaccgccg agcgaggaat attcgccttc ggtgttttcc ctgaccacgt
     1201 aaaaatcgat gtcgccaggc tgttttcccg ccagcgggca gggaacgcca ggaaagagac
     1261 gaaccgggcg caggttgacg tactggtcga attcacgacg aaatttcagc agcgaacccc
     1321 acaacgaaat atggtccgga acggtatccg gccagccgac ggcaccaaaa tagatggcgt
     1381 cgaaacggct aagttgctca tgccagtcgt ccggcatcat tttaccgtga tggctgtaat
     1441 actcgcagct cgcccacccc atttgctcaa aactcaagtc gaagccccag cgctcagcgg
     1501 cagcctgtaa cacgcgaatc ccttcaggaa ggacttcttt accaatcccg tctcccggga
     1561 tcgcagcaat acgcatcgtt ttcatcattg ggttctcact tcctgaccat caaaattgac
     1621 aacatcacca tcctataatt gacggaaaag gaattaatcc ccgtaactgg tgaaacataa
     1681 aacacgaatc atgaataatt taccgctgct gaatgatttg cgcgtcttta tgctggtggc
     1741 tcgtcgggct ggttttgccg ccgtggcgga agaactgggc gtttcaccgg cgttcgtcag
     1801 caagcgcatc gccttgctgg agcaaacgct aaacgtggtg ttgttacacc gcaccacccg
     1861 ccgcgtcacc attaccgaag aaggagagcg gatttatgaa tgggcgcagc ggattttgca
     1921 ggatgtcggt cagatgatgg acgaactttc tgacgtgcgt caggtgccac aggggatgct
     1981 gcgtattatc agcagctttg gttttggacg acaggtggtg gctccggcgt tatcagcgct
     2041 ggcgaaggcg tatccgcaac tggaattacg ttttgatgtg gaagaccggc tggtcgattt
     2101 ggtcaatgaa ggtgtcgatc tcgatattcg cattggcgat gacatcgccc ctaatttaat
     2161 cgcccgcaaa ctggcgacca attaccgcat tctctgcgcg tcgccggaat ttattgcgca
     2221 acatggcgcg ccgaaacatt taaccgatct ttctgcattg ccgtgcttgg tcattaaaga
     2281 gcgcgatcat ccttttggtg tctggcaatt acgcaataaa gaaggccacc atgcgattaa
     2341 agtcaccggc ccactgtcgt ctaatcatgg agaaattgtc catcagtggt gtctcgatgg
     2401 gcaggggatt gctctgcgtt cctagtggga tgttagcgaa aacattgcca gtggtcattt
     2461 agtgcaagtg ctaccggaat attaccagcc agcgaacgtc tgggccgttt atgtttcaag
     2521 gctggcgacg tcagcgaaag tgcggataac ggtagaattt ttacgccagt attttgccga
     2581 gcactacccg aatttttcac tggagcatgc ctgattaatg attcaattat cgggttgata
     2641 tcgggttaaa acctgatttt ctcctttcta agccgctaca gattggttag catattcacc
     2701 tttaatcgcg catgatcgaa agataattaa agaggttaat gtgttcgctg aatacggggt
     2761 tctgaattac tggacctatc tggt
//
LOCUS       DADMHM010000304         2769 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.309, whole genome shotgun sequence.
ACCESSION   DADMHM010000304 DADMHM010000000
VERSION     DADMHM010000304.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2769)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2769)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2769
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.309"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..238)
                     /locus_tag="JN125_004095"
     CDS             complement(<1..238)
                     /locus_tag="JN125_004095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000104949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAY8873655.1"
                     /translation="MSTKLTGYVWDGCAASGMKLSSVAIMARLADFSNDEGVCWPSIE
                     TIARQIGAGMSTVRTAIARLEAEGWLTRKARRQGN"
     gene            complement(228..407)
                     /locus_tag="JN125_004096"
     CDS             complement(228..407)
                     /locus_tag="JN125_004096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003034732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4222 domain-containing protein"
                     /protein_id="HAY8873656.1"
                     /translation="MRQVNRWFKDHYGVPVRVIRWEPETQRVIYLRGGYEHECFSPLE
                     QFRRKFREIEVGHEH"
     gene            complement(583..1140)
                     /gene="ymfL"
                     /locus_tag="JN125_004097"
     CDS             complement(583..1140)
                     /gene="ymfL"
                     /locus_tag="JN125_004097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415665.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YmfL"
                     /protein_id="HAY8873657.1"
                     /translation="MGKHHWKIEKQPEWYVKAVRKTIAKLPGGYAEAADWLDVTENAL
                     FNRLRADGDQIFPLGWAMVLQRAGGTHFIADAVAQSANGVFVSLPDIEDVDNADINQR
                     LLEVIEQIGSYSKQIRSAIEDGVVEPHEKTAINDELYLSISKLQEHAALVYKIFCISE
                     SNDARECAAPGVVASIASGCGETNA"
     gene            complement(1184..1384)
                     /locus_tag="JN125_004098"
     CDS             complement(1184..1384)
                     /locus_tag="JN125_004098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415664.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAY8873658.1"
                     /translation="MKAYWDSLTKEQQGELAGKVGSTQGYLRLVFNGYKKASFVLAKK
                     LEQCTSGAITKSDLRPDIYPKD"
     gene            1475..2149
                     /locus_tag="JN125_004099"
     CDS             1475..2149
                     /locus_tag="JN125_004099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LexA family transcriptional regulator"
                     /protein_id="HAY8873659.1"
                     /translation="MKTIHDIRRSNARKLRDGVGGNSSFATMIDREPTQTSRFMGDGA
                     TKNIGDSMARHIEKCFDLPIGWLDQEHQTTNITKKPDVSITNKQITLVPVISWVQAGA
                     WKEVGYSEVDLSTAETYPCPVPCGEMTYILRVIGDSMIDEYRPGDMIFVDPEVPACHG
                     DDVIALMHDTGETTFKRLIEDGTQRYLKALHPNWPEPYIKINGNCSIIGTVIFSGKPR
                     RYKIKA"
BASE COUNT          784 a          661 c          585 g          739 t
ORIGIN      
        1 ggttaccctg gcgacgcgcc ttacgcgtta accagccttc tgcttccagc cgtgcgatag
       61 ccgttctgac ggtactcatc cccgcgccaa tctgacgggc aatggtttca attgatggcc
      121 agcacacacc ttcgtcatta ctgaaatcag ccaggcgggc cataattgcc acgctggata
      181 acttcatgcc tgatgcagcg caaccatccc atacatagcc ggttaattta gtgctcatga
      241 ccgacctcta tttccctgaa tttacgacga aactgttcga gcggactgaa gcattcatgc
      301 tcataacctc cgcggaggta gataacccgc tgtgtttccg gctcccaacg aatgactctg
      361 acgggcactc cgtagtgatc tttgaaccag cggttaactt gtcgcaaagg actgtctcct
      421 tctgccggtt gaaatcaccc acagcccact ctgcaaagct gtgggttaca atttccctgt
      481 cacctggtac attcactgca tagcaatatt tcaccttcgc ttttccaccc ggtacagaaa
      541 gcgcaatcag ttgcgagcga cggtagtgtg ttgttaaact gttcatgcgt tagtttctcc
      601 acaaccagaa gcaatcgacg ccacgacgcc cggagctgca cactcgcggg cgtcattact
      661 ttctgaaatg caaaaaattt tgtagacaag tgctgcatgc tcctgcagct tcgaaattga
      721 gagatacagc tcgtcgttaa ttgctgtctt ctcatgcggt tccactacac cgtcttcgat
      781 tgctgaacga atctgttttg aataactgcc gatctgttca atgacttcca gcagacgctg
      841 gttaatatcg gcgttgtcca catcctcgat gtcaggaaga gacacaaaga cgccatttgc
      901 agactgcgcc acagcatcag caatgaagtg agtgccacca gcacgctgta aaaccattgc
      961 ccatcccagc gggaaaatct gatcgccatc tgcacgaagg cggttgaata aagcgttttc
     1021 tgttacatcg agccagtcag ccgcttcagc gtaaccaccc ggcaactttg cgatagtttt
     1081 tctgacagct ttcacgtacc actcaggctg tttttctatt ttccagtgat gcttacccac
     1141 gattagcctc atcgttctgt ggttaaaaat tgaaagtgtt ctgctaatct ttcggataga
     1201 tatccggtct taagtcagat ttcgtaattg cacctgacgt gcattgctca agttttttag
     1261 ccagcacaaa actggctttt ttatagccat tgaaaaccag ccgtaagtag ccttgtgttg
     1321 agccaacttt tccggccaac tcaccctgct gttctttggt taaagagtcc caatacgctt
     1381 tcatacaata tgtacctcca gcgtacatat tacatgattg aaatgaacct tcacgatact
     1441 tgtaccttag cggtacaagg gttttaattt cgttatgaaa acaatccatg acatccggcg
     1501 gtctaacgcc agaaaactga gagatggtgt tggcgggaat tcttcctttg ccactatgat
     1561 tgatcgcgag ccaacccaga ccagcaggtt tatgggagat ggtgctacta aaaatatcgg
     1621 tgacagcatg gcacgacaca ttgaaaaatg tttcgacctg cctatcggat ggctcgatca
     1681 agaacaccag acaacgaaca tcacaaaaaa acctgatgtt tcaatcacta acaaacaaat
     1741 aacgttagtc cctgtcatat catgggtaca ggccggagca tggaaagaag ttggctattc
     1801 tgaggttgat ttgagcacag cagaaactta tccctgccct gtaccctgtg gcgaaatgac
     1861 ttatatcttg cgggtgattg gtgattcaat gattgatgag taccgtccgg gagacatgat
     1921 ttttgttgat cctgaagtcc ctgcttgcca cggtgacgac gttattgcgt tgatgcacga
     1981 tacaggcgaa accaccttca agcgattgat agaagatgga acacagcgtt atctcaaagc
     2041 attacaccca aactggcctg agccctacat taagattaac ggtaattgct ctataattgg
     2101 cactgtgatt ttctcgggaa aaccaagaag atacaaaata aaggcctaat caatatttat
     2161 gaacctgctt cggcaggttt ttttatacat tgacaatgta ccccatggac acacaatgta
     2221 ccaaaacgaa acaacaaaca ggcaggatgc ccacgaagta gccgcctggg gcatatgaag
     2281 tccaagatga ttcgttagca acaaaacgcc cataggacgc ttcgctcttt aacaatttga
     2341 atattttcag cgtcaatgat ctgtttagct ccctacaagt aaatgtagcg tagcaccatg
     2401 ataaatcctg ctagtgttta gttaaaaatc gcgcgagagc aagaacgatg tgagggcagg
     2461 caatactgat agtgttattg ctattagttt atcaaaaata tttagacgac ccagatgaat
     2521 atttttaata catactcccc ctaatttaac aggagtaaat gttgatgaat aacgagacat
     2581 ctatactcaa caattgtatg atatgaacaa ttatataaca taatgtagga aaaataaaaa
     2641 tggattggca tgaccttata tcaaaggtaa ttatcggact tgttacaggc tcaatcgcag
     2701 cttacttaac tgcgcgatat gcactcggcc gttattataa agaaaaatgg tgggacaaaa
     2761 gaatagatt
//
LOCUS       DADMHM010000305         2698 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.310, whole genome shotgun sequence.
ACCESSION   DADMHM010000305 DADMHM010000000
VERSION     DADMHM010000305.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2698)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2698)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2698
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.310"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..490
                     /locus_tag="JN125_004100"
     CDS             <1..490
                     /locus_tag="JN125_004100"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418493.1"
                     /note="Acs; catalyzes the conversion of acetate and CoA to
                     acetyl-CoA; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acetyl-coenzyme A synthetase"
                     /protein_id="HAY8873660.1"
                     /translation="TFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIES
                     ALVAHPKIAEAAVVGIPHNIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLAT
                     PDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEKQAIAM
                     PS"
     gene            690..1004
                     /locus_tag="JN125_004101"
     CDS             690..1004
                     /locus_tag="JN125_004101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF485 domain-containing protein"
                     /protein_id="HAY8873661.1"
                     /translation="MNGTIYQRIEDNAHFRELVEKRQRFATILSIIMLAVYIGFILLI
                     AFAPGWLGTPLNPNTSVTRGIPIGVGVIVISFVLTGIYIWRANGEFDRLNNEVLHEVQ
                     AS"
     gene            1001..2650
                     /gene="actP"
                     /locus_tag="JN125_004102"
     CDS             1001..2650
                     /gene="actP"
                     /locus_tag="JN125_004102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005132593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation/acetate symporter ActP"
                     /protein_id="HAY8873662.1"
                     /translation="MKRVLTALAATLPFAANAADAISGAVERQPTNWQAIIMFLIFVV
                     FTLGITYWASKRVRSRSDYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVFTSGYD
                     GLIYSLGFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQGPIRILSACGSLVVVAL
                     YLIAQMVGAGKLIELLFGLNYHIAVVLVGVLMMMYVLFGGMLATTWVQIIKAVLLLFG
                     ASFMAFMVMKHVGFSFNNLFSEAMAVHPKGVDIMKPGGLVKDPISALSLGLGLMFGTA
                     GLPHILMRFFTVSDAREARKSVFYATGFMGYFYILTFIIGFGAIMLVGANPEYKDAAG
                     HLIGGNNMAAVHLANAVGGNLFLGFISAVAFATILAVVAGLTLAGASAVSHDLFANVF
                     KKGATEREELRVSKITVLILGVIAIILGVLFENQNIAFMVGLAFAIAASCNFPIILLS
                     MYWSKLTTRGTMLGGWLGLITAVVLMILGPTIWVQILGHEKAIFPYEYPALFSISVAF
                     LGIWFFSATDNSAEGARERELFRAQFIRSQTGFGVEQGRAH"
BASE COUNT          540 a          721 c          761 g          676 t
ORIGIN      
        1 caccttcaaa aatatgtatt tcagcggcga cggcgcgcgt cgcgatgaag atggctatta
       61 ctggatcacc gggcgtgtgg acgacgtgct gaacgtctcc ggtcaccgtc tggggacggc
      121 agagattgag tcggcgctgg tagcgcatcc gaagattgcc gaagccgccg tagtaggtat
      181 tccgcacaat attaaaggtc aggcgatcta cgcctacgtc acgcttaatc acggggagga
      241 accgtcacca gaactgtacg cagaagtccg caactgggtg cgtaaagaga ttggcccgct
      301 ggcgacgcca gacgtgctgc actggaccga ctccctgcct aaaacccgct ccggcaaaat
      361 tatgcgccgt attctgcgca aaattgcggc gggcgatacc agcaacctgg gcgatacctc
      421 gacgcttgcc gatcctggcg tagtcgagaa gctgcttgaa gagaagcagg ctatcgcgat
      481 gccatcgtaa cccacaattg ccggatgcga gtcggtaacg gtttgtaggc ctgataagac
      541 gcgacagcgt cgcatcaggc attgattgcc ggatgcggcg taaacgcctt atccggccta
      601 cattcggcaa gggttacccg agcgttaacc ttctcccata agggagcggg aattaaaaca
      661 atccctacat tacctctgga gaatctgtga tgaatggcac tatttatcag cggatagaag
      721 acaatgcgca tttcagggag ttagtcgaaa aacggcaacg gtttgccacc atcctgtcga
      781 ttattatgct ggcagtttat atcggcttta ttttactgat cgccttcgcg cccggctggc
      841 tgggcacgcc gctgaatccg aacaccagcg tcacacgcgg tattccaatt ggtgttggag
      901 tgattgtgat ctcctttgtt ctcaccggta tctacatctg gcgggcgaac ggcgaattcg
      961 accgtcttaa taatgaagtc ctgcatgagg tacaagcatc atgaaaagag ttctgacggc
     1021 gcttgccgcc acactccctt tcgcagctaa cgccgcggat gctattagcg gggccgtaga
     1081 gcgccagcca acgaactggc aggcgattat tatgttcctg attttcgtcg tgtttacgct
     1141 cggcattacc tactgggcat caaaacgcgt acgttctcgt agcgactact acacggcagg
     1201 cggcaatatc acaggcttcc agaacgggct ggcgattgcc ggtgactata tgtccgccgc
     1261 ctcatttttg gggatctccg cgctggtgtt tacctccggc tatgacggct taatttactc
     1321 gctgggcttc ctggtgggct ggccgatcat tttgttcctg attgccgaac gtctgcgtaa
     1381 cctgggacgc tacacctttg ccgatgtagc ctcttaccgc ctgaaacaag ggccgattcg
     1441 tattctttcg gcctgtggtt ctctggtggt ggtggcgctt taccttatcg cccagatggt
     1501 aggcgcaggt aaactgatcg agctgctgtt tggccttaac tatcacattg cggtggtgct
     1561 ggtcggcgtg ctgatgatga tgtacgtcct gttcggcggc atgctggcga ccacctgggt
     1621 gcaaattatt aaagccgtgc tgttgctgtt cggtgccagc tttatggcct ttatggtgat
     1681 gaaacacgtc ggctttagct tcaataatct gttcagcgaa gcgatggcgg tacacccgaa
     1741 aggtgtcgac atcatgaagc cgggcgggct ggtgaaagat ccgatctccg cgctctctct
     1801 gggtctggga ctgatgtttg gtacggcggg cttgccgcac attctgatgc gcttctttac
     1861 agtcagcgat gcccgcgaag cacgtaagag cgtgttctac gccaccgggt ttatgggcta
     1921 cttctatatt ctgaccttta ttatcggctt cggcgcgatc atgctggttg gtgcgaatcc
     1981 ggaatataaa gacgcggcgg gccatctgat tggtggtaac aacatggcgg ccgttcacct
     2041 ggcgaatgca gtgggcggca acctgttcct cggttttatt tcagcggttg ctttcgccac
     2101 tatcctcgcg gtggttgcgg gtctgacgct ggcgggcgca tccgcggttt cgcatgactt
     2161 gttcgctaac gtcttcaaaa aaggtgcgac cgaacgtgaa gaactgcggg tatcgaaaat
     2221 caccgtcctg attttgggtg tgattgcgat tatcctcggc gtgctgtttg agaatcagaa
     2281 catcgccttt atggtaggcc ttgcgtttgc catcgcggcg agctgtaact tcccgatcat
     2341 tctgctttcc atgtactggt cgaaactgac tacccgtggc acgatgctgg gcggctggct
     2401 ggggctgatt accgcagtgg tgctgatgat cctcggccca actatttggg tacagatcct
     2461 cggtcacgaa aaagccatct tcccgtatga atacccggcg ctgttctcta tcagcgtggc
     2521 attcctcggc atctggttct tctcggcaac cgataactca gcggaaggtg cgcgcgagcg
     2581 tgaactgttc cgtgcgcagt ttatccgctc ccagaccggc tttggcgttg agcaaggccg
     2641 cgcacattaa tctctcccct tccccggtcg cctgaccggg gaatactctt cctctcca
//
LOCUS       DADMHM010000306         2645 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.311, whole genome shotgun sequence.
ACCESSION   DADMHM010000306 DADMHM010000000
VERSION     DADMHM010000306.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2645)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2645)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2645
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.311"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(264..1607)
                     /gene="gdhA"
                     /locus_tag="JN125_004103"
     CDS             complement(264..1607)
                     /gene="gdhA"
                     /locus_tag="JN125_004103"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013366584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HAY8873663.1"
                     /translation="MDQTYSLESFLNHVQKRDPNQTEFAQAVREVMTTLWPFLEQNPK
                     YRQMSLLERLVEPERVIQFRVVWVDDRNQVQVNRAWRVQFSSAIGPYKGGMRFHPSVN
                     LSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSESEVMRFCQALMTELYRHLGA
                     DTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYF
                     TEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTK
                     EKLARLIEIKASRDGRVADYAKEFGLVYLEGQQPWSVPVDIALPCATQNELDVDAAHQ
                     LIANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLG
                     WKAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQGVI"
     gene            1843..2115
                     /locus_tag="JN125_004104"
     CDS             1843..2115
                     /locus_tag="JN125_004104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YnjH family protein"
                     /protein_id="HAY8873664.1"
                     /translation="MSRALFAVVLAFPLIALANPHYRPDVEVNVPPEVFSSGGQSAQP
                     CTQCCVYQDQNYSEGAVIKAEGILLQCQRDDKTLSTNPLLWRRVKP"
     gene            complement(2081..2488)
                     /gene="nudG"
                     /locus_tag="JN125_004105"
                     /pseudo
     CDS             complement(2081..2488)
                     /gene="nudG"
                     /locus_tag="JN125_004105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707356.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CTP pyrophosphohydrolase"
BASE COUNT          658 a          697 c          645 g          645 t
ORIGIN      
        1 atctgctgct atcgcagaaa gttaacggat gctgaacttg aagcgtgtta tcgttacgac
       61 aagcagtttt gggagcacta cagtaagaaa tgccgttggc ccataagaaa tgttccctgg
      121 ggagcatcat ccgttaaata ctcataaacg cctgaaattt tgccgggggc gctgcgcttg
      181 cccggcctac attagagcgt aactgcaatg aattgtgccc atttgtaggc ctgataagcg
      241 tagcgccatc aggcatttac aacttaaatc acaccctgcg ccagcatcgc atcggcaacc
      301 ttcacaaaac cggcaatgtt cgcgccctgc acgtagttgg tttgctcacc ttcaccacca
      361 tgctcaacac aggcatggtg gatatccagc atgatgtgat gcaaacgtgc gtcaactttc
      421 tcggctttcc agcccaggcg cgcagcgttt tgcgccattt caaggcctga cgttgctaca
      481 ccgccagcat tagccgcttt acccggtgca aacagtacgc ctgcctgctg gaacagttca
      541 gtcgcttcga tggtggtcgg catatttgcc ccttcggcga cggctttaac gccattggcg
      601 ataagctgat gcgcggcgtc aacatccagt tcgttctggg tggcgcaagg cagggcgata
      661 tcaaccggta cagaccacgg ctgttggcct tcgagataga ccagaccaaa ttctttggcg
      721 taatctgcca ctcgaccatc gcggctggct ttgatttcga taagacgtgc cagtttctct
      781 ttcgtgaatc cgctttcatc aactacagtg ccgctggagt ctgacgcagt gatcacacga
      841 gcaccaaatt ccatcgcttt ttcgatagcg tactgggcga cgttgccgga gccagaaacg
      901 gaaacgcgca tcccttcaaa acccataccg tggcgtttta acattgcttc tgtgaaataa
      961 accagaccgt agccggtagc ttccgggcga ataagactac cgccaaatga aaggccctta
     1021 ccggtgaaga cgcaggcggt attgttggag agctttttca tcatccccgc cataaagccg
     1081 acttcacgac caccaacgcc gatatcacct gccggaacgt cggtatccgc gcccagatga
     1141 cgataaagct cggtcatcag cgcctggcag aaacgcatca cttcgctttc gcttttacct
     1201 ttcgggtcaa aatcgctacc gcctttacca ccgcccatcg gcagggtagt cagggcattt
     1261 ttgaaggttt gttcgaagcc gaggaatttg agaatggaga ggttaactga cggatggaag
     1321 cgcataccgc ctttgtacgg gccgatggct gagctgaact gcacacgcca tgcacggttg
     1381 acctgtacct ggttgcgatc atcaacccat accacgcgaa actggatcac gcgctccggt
     1441 tcaaccagac gctccagtaa tgacatctgg cgatattttg gattttgttc aagaaaaggc
     1501 cagagtgtgg tcattacttc acgaacggct tgcgcgaact cggtttgatt cgggtcgcgc
     1561 ttttggacat ggttgaggaa tgactccaga gaatatgtct gatccataga tataaaaccc
     1621 ttatatatta atacgattgt gcttatgttg tttatgtcat gtgcttttgc agttttcgac
     1681 tataccatca agaatgtgac ggtaagcaag aaaaaaatga cccaggaaag caaattaata
     1741 acgagagtaa tctcataacc aaatgcgata actcagacgc taaagttttg ccacccggct
     1801 accgttatca gttgcagaga caataacgtt aaggagttcc ctgtgagtcg agcattgttc
     1861 gccgtagtat tagcatttcc attaattgca ctggctaacc cgcattatcg tccggacgtg
     1921 gaggtaaacg taccgccaga agtgttcagt tcaggcgggc agtcagcgca gccctgtact
     1981 cagtgctgcg tttatcagga tcaaaattat tctgaagggg cggtaattaa agccgaagga
     2041 atactgctgc aatgccagcg ggatgacaaa acccttagca ctaatccgct gctctggcgg
     2101 cgcgtaaagc cataaacgcc tctaatagtg gaatgtcagt aggggccagc ggatattgca
     2161 gcgcctcttc aggtgagcac cagaccagcg cctgatgttc atgtgcctgt aacgtcccgt
     2221 ggaagtcggg tacgtgccag gcatgaagat ggataatccg gcccgaaact tctcgctgat
     2281 ggctggcaac atactcaccc acagttgctt cgatgcccaa ttcttcgttt aactcacgca
     2341 ccagtgcctg ctgctagctt tcatccagct cgactttacc accggcaaac tcccataatc
     2401 ccgcctgatc gctctgggcg gggcgttgcg cgagtaaaat tttgccatca cgttcaatga
     2461 tggcggcaac aacttcaatc attttcataa attacacacg ggcagataag cgaaaaatgc
     2521 cataatatcc gcactgttgc tcaatcagaa aggctttata tttaaggagt gcctgtgcta
     2581 gaccgccatc ttcatccccg gattaaaccg ttgttgcatc agtgcgtgcg ggttcttgat
     2641 aaacc
//
LOCUS       DADMHM010000307         2636 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.312, whole genome shotgun sequence.
ACCESSION   DADMHM010000307 DADMHM010000000
VERSION     DADMHM010000307.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2636)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2636)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2636
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.312"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            89..2605
                     /locus_tag="JN125_004106"
                     /pseudo
     CDS             89..2605
                     /locus_tag="JN125_004106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312049.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial biogenesis outer membrane usher
                     protein"
BASE COUNT          754 a          640 c          605 g          637 t
ORIGIN      
        1 gggctgcaat caatgattat ggcggcagtt ccgggacaga aactcgtcca ctgcaataac
       61 aaatataaaa aacacaggtc atcagggaat gccacaacga caccaccagg gacataaacg
      121 cacaccgaaa cagttggcgc tcatcatcaa acgctgtttg ccgatggtgc tcactggcag
      181 cggcatgctt tgcactaccg ctaacgccga agagtattat ttcgacccca ttatgctgga
      241 aactacaaaa agtggtatgc aaacaactga tctgtcacgt ttttcaaaaa aatacgcaca
      301 actaccagga acttatcagg ttgatatctg gctgaataaa aagaaggttt cacagaaaaa
      361 aattacattt accgccaatg cagagcaact tctgcagcca cagtttacgg tagaacaact
      421 acgtgagctg ggtattaagg tggatgaaat cccggcgctg gctgaaaaag atgacgatag
      481 cgtgatcaac tcgcttgaac aaatcattcc cggtacagct gctgaatttg atttcaatca
      541 tcagcgactt aatttgagca ttccccaaat tgcactgtac cgtgatgcaa gaggttacgt
      601 ctccccttct cgttgggacg atggtatacc aacgctgttt accaactact cgtttacagg
      661 ttctgataac cgttaccgcc agggcaatcg tagccaacga cagtacctga atatgcaaaa
      721 tggtgctaat tttggcccct agcgattacg taactattct acgtggacac gcaacgatca
      781 ggcgtcaagc tggaacacta tcagtagtta tttacaacgt gatatcaagg cgttgaagtc
      841 tcagttgctt ctgggagaaa gcgccaccag cggcagtatt ttttccagct acacctttac
      901 tggcgtgcaa ctcgcttccg acgataatat gttgccaaac agccagcgcg gatttgcccc
      961 aacggtacgc ggtatcgcaa acagtagtgc aatcgtgact atcaggcaaa atggttatgt
     1021 gatctatcaa agcaacgtgc cagcgggtgc ctttgaaatt aacgatctct acccctcttc
     1081 caacagcggc gatttagaag tcacgattga agaaagtgac ggtacacaac gtcgctttat
     1141 ccagccttat tcttcattac ccatgatgca gcgacctggg catctaaaat atagcgcgac
     1201 cgctggacgc tatcgcgctg atgcaaacag tgatagcaag gaacccgaat ttgctgaagc
     1261 cacggcaata tatggtttga ataatacttt tacgctgtat ggcggcctgc tcggttctga
     1321 agattattat gcgctgggga tcggtatcgg cggcacactt ggcgcactgg gcgcgttgtc
     1381 gatggatatc aacagagctg acacccaatt cgataaccag cactcttttc atggctatca
     1441 atggcgtacg cagtacatca aagatatccc ggaaaccaac accaatatcg ctgttagcta
     1501 ctatcgctat accaacgatg gctattttag ttttgatgaa gccaataccc gcaattggga
     1561 ctataacagt cgccaaaaaa gtgaaattca attcaacatc agccagacaa tatttgatgg
     1621 ggtaagtctg tatgcctccg gttcgcagca agactattgg ggcaataacg agaaaaacag
     1681 gaatatctct gttggggttt ccggccagca atggggaatt ggttacagcc tgaattatca
     1741 atacagccgc tacactgatg aaaataatga ccgtgcactc tctttgaatc tcagtattcc
     1801 gttagaacgc tggttaccgc gtagccgggt ttcctatcag atgaccagcc agaaagatcg
     1861 cccaacccaa catgaaatgc gtcttgatgg ctcactgctg gatgatggtc gcctgagcta
     1921 tagcctggaa caaagtctgg atgacgataa caaccataac agtagcctga acgccagtta
     1981 ccgttcacct tatggaacct tcagtgccgg atacagttac ggtaatgaca gcagccaata
     2041 caattacggc gttaccggcg gcgtggttat ccatcctcat ggcgtgacgc tctcgcaata
     2101 tctgggcaac gcttttgcgc ttatcgatgc taacggggct tctggcgtga ggatacaaaa
     2161 ctatccgggg attgctactg atccctttgg ctatgcagtg attccttatc tcacgactta
     2221 tcaggaaaac cgtctctcgg tagatactac gcagctgccc gataacgtcg atcttgaaca
     2281 aacaacacag tttgtggtgc ccaacagagg tgcaatggta gcggcgcgtt tcaacgccaa
     2341 tatcggttat cgcgtacttg ttacagtcag cgatcgcaac ggtaaaccgt tgccctttgg
     2401 cgctcttgcc agcaacgatg atacggggca acaaagtatc gtcgatgagg gcggcatact
     2461 atatctctct gggatatcga gtaaatcaca aagctggact gtacgctggg gaaatcaggc
     2521 agatcaacaa tgtcagtttg cttttagtac accggattca gaaccaacaa cctctgtatt
     2581 acaaggcaca gcgcagtgcc attaaggata aaaaaatgaa aagagcgcct cttata
//
LOCUS       DADMHM010000308         2590 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.313, whole genome shotgun sequence.
ACCESSION   DADMHM010000308 DADMHM010000000
VERSION     DADMHM010000308.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2590)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2590)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2590
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.313"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            97..717
                     /locus_tag="JN125_004107"
     CDS             97..717
                     /locus_tag="JN125_004107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HAY8873665.1"
                     /translation="MSSASAEDLTLLQLRRSGLVIADLAGESEDPRSVCEHYYSLISQ
                     YREIHWVFMVSRSWYSQAVELLMCPTATLLSDVEPIENLVKTVRSGNTHAERISAMLT
                     SPAMNETHDFSYRSVILTLSERKVLRLLGKGWGINQIVSLLKKSNKTISAQKNSAMRR
                     LAIHSNAEMYAWINSAQGARELNLPSVYGDAAEWNTAELRREMSHS"
     gene            675..1351
                     /gene="bglJ"
                     /locus_tag="JN125_004108"
                     /pseudo
     CDS             675..1351
                     /gene="bglJ"
                     /locus_tag="JN125_004108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418786.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding transcriptional activator BglJ"
     gene            complement(1389..2177)
                     /gene="fhuF"
                     /locus_tag="JN125_004109"
     CDS             complement(1389..2177)
                     /gene="fhuF"
                     /locus_tag="JN125_004109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore-iron reductase FhuF"
                     /protein_id="HAY8873666.1"
                     /translation="MAYRSAPLYEDIIWRTHLQPQDAGLAQAVRATIAKHREHLLEFI
                     RLDEPAPLNAMTLAQWSSPNALSSLLAVYSDHIYRNQPTMIRENKPLISLWAQWYIGL
                     MVPPLMLALLTQEKALDVSPEHFHAEFHETGRVACFWVDVCEDKNATPHSPQQRMETL
                     ISQALVPVVQALEATGEINGKLIWSNTGYLINWYLTEMKQLLGEVTVESLRHALFFEK
                     TLTNGEDNPLWRTVVLRDGLLVRRTCCQRYRLPDVQQCGDCTLK"
     gene            2318..2554
                     /locus_tag="JN125_004110"
     CDS             2318..2554
                     /locus_tag="JN125_004110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313355.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1435 domain-containing protein"
                     /protein_id="HAY8873667.1"
                     /translation="MLQRTLGSGWGVLLPGLLIAGLMYADLSPDQWRIVILMGLVLTP
                     VMLYHKQLRHYVLLPSCLALIAAIMLMIMNLNQG"
BASE COUNT          679 a          566 c          657 g          688 t
ORIGIN      
        1 ggatgctgca aaaatggaat tgttatcagt aaaatacctg ttatgcaagc agggttaaaa
       61 gaggtcatga ggactcactt ccctgaatat gaaataatat ccagcgcctc tgcggaggac
      121 cttaccttat tacaattacg tcgttccgga ttagtcattg ctgatttagc cggtgaaagt
      181 gaagatccac gttctgtttg tgaacattat tattctttaa tctcacaata tcgggaaatt
      241 cactgggttt tcatggtgtc acgctcctgg tattcccagg cagtagaatt gctcatgtgc
      301 cctacggcga cgttattgtc tgatgttgaa cccattgaga atctggtcaa gaccgtacgt
      361 tccggcaata cgcacgcaga gcgtatcagc gccatgctga cctctccggc aatgaatgaa
      421 actcatgatt ttagctatcg ctccgtcatt ctcactcttt cagagcgcaa ggtactgcgg
      481 ctattaggta aaggatgggg catcaaccag atagtttcgt tgcttaagaa aagtaataaa
      541 actatcagcg cccaaaaaaa cagtgcgatg cgtcgactgg caattcacag caacgctgaa
      601 atgtatgcat ggataaatag cgcgcagggt gcaagagaac ttaacttgcc ttctgtttat
      661 ggagatgccg cagaatggaa cacagccgaa ttaagaagag aaatgtcgca ctcatagaaa
      721 aatgcgtcat gagcagtatc ggtattgaga gtttattcag aaagtttgcg ggtaaccctt
      781 ataagctcca tacctatacc agtcaggagt catttcagga tgccatgtcg cggatctcat
      841 ttgcggcggt catttttctt tttctgccat gagaagtgag cgcagagagg gattatcttg
      901 cctgactgaa ctggcgatta agtttccgcg tacccggcgt ttagttattg cggatgatga
      961 tattgaagct cggctgattg gttcattgtc gccatcaccg ctggacggtg tattaagtaa
     1021 agcgtcaacg ctggagattt ttcatcagga actctttttg tcattaaatg gtgtacgtca
     1081 ggcgaccgac cgactgaaca atcagtggta cattaaccaa agccggacgc taagcccgac
     1141 ggagagagaa atattgcgct ttatgtcgcg tggctactca atgacacaaa ttgccgagca
     1201 gcttaaacgc aatatcaaaa cgatccgtgc acataaattt aatgtgatgt cgaaactggg
     1261 cgtcagttct gatgcagggt tgttggaggc cgcagatatt ctgttatgta tgcggcattg
     1321 cgaagcaagt aatgtgttgc atccctatta atcctcatga tgccgggttt acttccccgg
     1381 cagtgctttc atttcagcgt acaatcgcca cattgctgca catccggtaa gcgataacgc
     1441 tggcagcagg ttcggcgcac cagcaggcca tcgcgcagca cgacggtacg ccagagtgga
     1501 ttatcttcac cgttcgtgag cgttttctca aaaaagaggg catggcgcag cgattcaacc
     1561 gtcacctcgc cgagcagttg cttcatctca gtgagatacc agttgatcaa ataaccggta
     1621 ttactccaga taagtttgcc gttgatctct ccggtcgctt ctagtgcctg cacaaccgga
     1681 accagcgcct ggctgattaa cgtttccatt cgctgctgcg gcgaatgtgg tgttgcgttt
     1741 ttatcttcac acacatcgac ccagaaacag gcgacgcgtc cggtttcgtg aaactcagca
     1801 tggaaatgtt ccggcgacac atctaatgcc ttttcctgcg tcagtagcgc cagcattaat
     1861 ggtggcacca tcaggccgat ataccattgt gcccatagtg agatcagcgg tttgttctcg
     1921 cggatcatcg ttggttggtt gcgatagata tgatcggaat agaccgcgag tagagaactt
     1981 agcgcattcg gtgatgacca ttgcgccagc gtcatggcgt taagcggagc gggttcatcc
     2041 aggcggataa actcgagcaa atgttcacga tgtttggcga tcgtcgcacg tacggcttgt
     2101 gcaagcccag catcctgcgg ctggagatgc gttcgccaga tgatatcttc atagagcggt
     2161 gcggaacgat aggccataat cgggatagta atctaaatga taatgattgc taatcctagc
     2221 gataggttta cccgatagca agggatttct ctggcttgaa aatgataaaa attatcatat
     2281 gatattagtt atcattatca atgaaagaga tgaaaccatg ttgcaacgta cgctgggcag
     2341 tggctgggga gtgttgctgc cgggattgct gattgcaggg ctgatgtatg cggatttatc
     2401 gccggatcag tggcggattg tcattctgat gggattagta ttgacgccgg tgatgctgta
     2461 tcacaaacag ttacggcatt acgttttgct accatcgtgc ctggcgctta ttgctgccat
     2521 catgctgatg ataatgaatt tgaatcaggg atgaaaaatc aaggaagaaa caagaaagga
     2581 agtaaagata
//
LOCUS       DADMHM010000309         2588 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.314, whole genome shotgun sequence.
ACCESSION   DADMHM010000309 DADMHM010000000
VERSION     DADMHM010000309.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2588)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2588)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2588
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.314"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(11..322)
                     /locus_tag="JN125_004111"
     CDS             complement(11..322)
                     /locus_tag="JN125_004111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706349.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HAY8873668.1"
                     /translation="MEKEDSFPQRVWQIVAAIPEGYVTTYGDVAKLAGSPRAARQVGG
                     VLKRLPEGSTLPWHRVVNRHGTISLTGPDLQRQRQALLAEGVMVSGSGQIDLQRYRWN
                     Y"
     gene            485..581
                     /gene="ffs"
                     /locus_tag="JN125_004112"
     ncRNA           485..581
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="JN125_004112"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            701..1054
                     /locus_tag="JN125_004113"
     CDS             701..1054
                     /locus_tag="JN125_004113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1428 domain-containing protein"
                     /protein_id="HAY8873669.1"
                     /translation="MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWAS
                     DVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFD
                     GKRMIYGGFESIIDE"
     gene            complement(1096..>2588)
                     /gene="pdeB"
                     /locus_tag="JN125_004114"
     CDS             complement(1096..>2588)
                     /gene="pdeB"
                     /locus_tag="JN125_004114"
                     /EC_number="3.1.4.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308537.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cyclic-guanylate-specific phosphodiesterase
                     PdeB"
                     /protein_id="HAY8873670.1"
                     /translation="PVGLSIWLAHQQVETSFIEELDTYSSRVAIRANKVATQGKDALQ
                     ELERWQGAACSEAHLMEMRRVSYSYRYIQEVVYIDNNIPQCSSLEHESPPDTFPEPGK
                     ISKDGYRVWLTSHNDLGIIRYMVAMGTAHYVVMIDPASFIDVIPYSSWQIDAAIIGNA
                     HNVVITSSDEIAQGIITRLQKTPGEHIENNGIIYDILPFPEMNISIITWASTKMLQKG
                     WHRQVFIWLPLGLVIGLLAAMFVLRILRRIQSPHHRLQDAIENRDICVHYQPIVSLAN
                     GKIVGAEALARWPQTDGSWLSPDSFIPLAQQTGLSEPLTLLIIRSVFEDMGDWLRQHP
                     QQHISINLESTVLTSEKIPQLLREMINHYQVNPRQIALELTEREFADPKTSAPIISRY
                     REAGHEIYLDDFGTGYSSLSYLQDLDVDILKIDKSFVDALEYKNVTPHIIEMAKTLKL
                     KMVAEGIETSKQEEWLRQHGVHYGQGWLYSKALPKEDFLRWAEQHL"
BASE COUNT          632 a          640 c          665 g          651 t
ORIGIN      
        1 ccggagaggg ttagtagttc cagcgataac gctgcaagtc gatttgcccg cttcccgata
       61 ccatcacacc ttctgccagt aatgcctgtc gctgacgctg taaatccggt ccggttagcg
      121 aaattgtgcc gtggcgatta accacccggt gccagggtaa ggtgctgcct tcagggagac
      181 gctttaacac accgcccacc tggcgcgcgg cgcggggcga tcccgccagt ttcgccacat
      241 caccgtaagt ggtgacatag ccttcgggaa tagcggcgac gatttgccag acgcgttggg
      301 gaaatgaatc ttctttttcc atcttttctt cctgaggtaa tttttcagca taatctggaa
      361 aaacgcccga gtgaagtcgc attgcgcaag aaaccagcat ctggcacgcg atgggttgca
      421 attagccggg gcagcagtga taatgcgcct gcgcgttggt tctcaacgct ctcaatgggg
      481 gctctgttgg ttctcccgca acgctactct gtttaccagg tcaggtccgg aaggaagcag
      541 ccaaggcaga tgacgcgtgt gccgggatgt agctggcagg gcccccaccc atttctgcct
      601 cccaccgttt cgtcaaaaaa aaccaacatg gctaaacttt aaccacaact gacgtcgcaa
      661 gaattgtctg gctgcgcagt acgcttcgga ggtatgtctg atgaagtatg ttgatggttt
      721 tgtggttgcc gttcctgccg ataaaaagga tgcctatcgg gaaatggccg ctaaggctgc
      781 gccattgttt aaagagtttg gcgcgcttcg tattgtcgaa tgctgggcca gcgatgtacc
      841 ggatggcaaa gtgaccgatt ttcgtatggc ggtgaaagcg gaagagaatg aagaggttgt
      901 ctttagctgg attgaatacc cttcaaaaga ggtccgcgac gctgctaatc aaaagatgat
      961 gtcggaccca cggatgaaag agttcggcga gtccatgccg tttgacggca agcgaatgat
     1021 ctatggcgga ttcgagtcaa tcatcgacga ataggtagcg tgacgggctg tgcggcgtgc
     1081 cgtcagccca aaaattcaca aatgttgctc ggcccagcgt aagaaatctt ctttcggtaa
     1141 tgccttgctg tagagccagc cctgaccgta gtgcacgcca tgctggcgta gccactcttc
     1201 ttgtttactg gtttcgattc cctccgctac cattttcagt ttcagtgttt ttgccatttc
     1261 gatgatatgc ggcgtgacat ttttatattc cagcgcatca acgaaagatt tatcgatctt
     1321 cagaatgtcg acatccagat cctgtaaata acttaaactt gaatatcccg taccaaaatc
     1381 atcaagataa atttcatggc ccgcctcccg gtagcgagaa attatcgggg cgctggtttt
     1441 cggatcggca aactcgcgtt cagtgagttc aagcgcgatc tgtctgggat taacctgata
     1501 gtgattgatc atttcacgca gcaattgcgg gattttttcc gaggtgagca cggtggattc
     1561 aagattgatc gaaatatgct gctgtggatg ctgacgcagc cagtcgccca tatcttcaaa
     1621 gacgcttctt ataatcagta gcgtcaatgg ctcagaaagg cctgtttgct gtgccagcgg
     1681 aataaaacta tctggtgaca accaactacc gtctgtctgc ggccagcgcg ccagtgcctc
     1741 agcaccgaca attttgccat tggctaagga gacaatcggc tgatagtgca cgcaaatatc
     1801 acgattttcg atagcatcct gcagccgatg atgcggtgac tggatacggc gcaaaatacg
     1861 cagcacaaac atcgctgcca gcaggccaat caccaacccg agcggtaacc aaataaagac
     1921 ttgccgatgc cagcctttct gcaacatttt cgttgaagcc caggtgatga tcgaaatatt
     1981 catctccggg aagggcagga tatcgtaaat gattccatta ttttcgatat gctcaccggg
     2041 tgttttttgt agcctggtaa taattccctg agcaatttca tcgctgctgg ttatgacaac
     2101 gttatgggca ttgccaataa tggcggcatc aatttgccat gagctatagg gaatgacatc
     2161 aataaaggaa gcggggtcga tcatgacgac ataatgtgcc gttcccatgg cgaccatgta
     2221 acggataatg cctaaatcgt tatgcgatgt taaccagaca cgataaccat ctttcgaaat
     2281 tttacctggc tcggggaagg tatcgggcgg actttcatgc tccagagacg aacactgggg
     2341 aatgttgtta tcgatataaa ccacttcctg aatatagcga taactgtaag atacccgacg
     2401 catttccatg agatgggctt cgctacaggc agcgccttgc catctttcca gctcttgcag
     2461 cgcatctttc ccttgtgtcg ccaccttatt ggcccgaata gcgacgcggg aggaataggt
     2521 atccagctct tcaataaacg atgtttctac ctgctgatgg gccagccaga tgcttaagcc
     2581 gacaggca
//
LOCUS       DADMHM010000310         2581 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.315, whole genome shotgun sequence.
ACCESSION   DADMHM010000310 DADMHM010000000
VERSION     DADMHM010000310.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2581)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2581)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2581
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.315"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            327..648
                     /locus_tag="JN125_004115"
                     /pseudo
     CDS             327..648
                     /locus_tag="JN125_004115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001232281.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(682..888)
                     /locus_tag="JN125_004116"
     CDS             complement(682..888)
                     /locus_tag="JN125_004116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001570270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873671.1"
                     /translation="MTVSYKITYEHRDGDQIRMEEVLFHSEHEPTKDEIHDAVRKDTV
                     RFNSPSNGVTAVSGFKVISVVPVP"
     gene            complement(1851..2576)
                     /locus_tag="JN125_004117"
     CDS             complement(1851..2576)
                     /locus_tag="JN125_004117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001433554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873672.1"
                     /translation="MLVPVRGGKRPEVVTAPSGTEITVEPIEQAILVSHQTKLWDQKS
                     TTGFTQGTLQQDALNICDNVVRTINSKMVDVLESSKLLKTVELPALTGSLTAKADAIM
                     DALYENTESSFGSEVSDYGIIAHESHLKALSRLAAKQGFGGEDAIVDMLGTDIAYYNG
                     EDRGVFMMAKRFTALSFGCFRHDGENVTVVLSRDGDSQSHDLEILGKVFVVAEAATTI
                     KMGTGSATAVLPVVKRLSFTKDS"
BASE COUNT          719 a          599 c          572 g          691 t
ORIGIN      
        1 atttaggggg cgttatgcat ttatcttcaa aacatcttag cactatccgc tttctcgtta
       61 ttgcttcatt cgttgtagct atcagttacc gactttttgt tgcctccaat gacgaaatga
      121 atcctcttgc tattattgcc cattcaatag cgacaatagt tagacggttt gaaaaaccgt
      181 aatacaataa acatccgaaa taatttcgaa agcaactcat ttttactctg caaacaatca
      241 gaaaagactt aattttgcta agttaatgca ttaatctaaa aacgctttaa atcaatacat
      301 aaccattatc tcttgggatt atttacatgc gcaaaagttt aatgctgtta cttgcttcaa
      361 cattgattat ttctggatgt gcaacaaaaa aacaactcgt tccaactggt ggaagcaaat
      421 cagacggcac agttaggatg agttattctt acggtatgtt tgaaagtcct gttgtagatc
      481 cacaacaagg caggaatgca gccaaagcgc gttgtgccgc ttaggggata ttcaggagcc
      541 gagccttttg gtggattcac ttctcaatgt tcacaacctt cttcatctgg ttgtatgcaa
      601 acacttgtga ctatcgaata tcaatgcact ggcgatatta agaagtaata attaggggct
      661 tccagcccct tctataacca ttcatggaac agggacaacc gaaatcactt taaaccctga
      721 aacagccgtt actccattag atggagaatt aaatctcaca gtatcttttc ttactgcatc
      781 atgaatttca tcttttgttg gttcatgctc tgaatggaat aaaacctctt ccattctaat
      841 ttgatcaccg tctctatgct cataagtaat cttgtagcta acagtcatat caacctcatg
      901 caggggaatt gtgagattat tatagacaat agaaaccata aagccccgtt ggtgatacag
      961 caacaagcgg gagcgtagcg acttcatcag attgtcagaa agatcacacc ttatcaggat
     1021 aaccgtgtac ccgttgggag cgtggctgaa acgctgatag agcttgcata tggtttgcaa
     1081 ggaccaatat caccataaac ctgtttacgc agccacaagg ccgcacatcg ggcttaaatg
     1141 cgtgtgttca gtctgtcgat gacattacaa tgcctggatg ggctttatct tcacgttgtg
     1201 ctatcgcggt gtgagaggtg caactgccgc caacgttagg ttatactgtc atctcaccgt
     1261 gtaacttaac gtgacagtta ctaagggcgg ttcacaatgg tagaactcct aagcaaatta
     1321 aataggtaac tgtttaagtt gctgacagag aagacttttt tagtcttctc cacctgggga
     1381 gattctggag cgggcgaagg gagcctacga caaatcgaag acaaccagct aacctcttgt
     1441 ttcttaaaga caggtgaatc caattggttg tagtgatagt cacatattta gcgatagacg
     1501 gtcaagactt gaagcacgta atattccctc taaaggaata gaacccacgg tctgactacc
     1561 cgaccccttt gagctgactc agggtcgggc tatgggggct tttggctcgc tctttatatt
     1621 agataaggtc tcacattttt cagtcaaaac tcatcgtcta atagcccata gccagaccac
     1681 caatcccagc tttagcagga agaccacgag atagactttg tgtaggtcca tttggtcctc
     1741 ctaccttctg tattcacgaa ctagattgct agtacaaaat aaaggccaga catccagttc
     1801 ggaagtctga ccaatagtcg ttattgttag ttagcttgtc gctagtaatc ctagctgtct
     1861 ttagtgaagc tcaggcgttt gactacaggc aggacagcag tagccgagcc agtacccatc
     1921 ttgatggtcg tagcagcttc agctacaaca aacaccttgc cgagaatctc aaggtcgtga
     1981 gactgggagt caccatcacg tgaaaggacc accgtaacgt tctcgccatc gtgacggaag
     2041 cagccgaagc tcagagccgt aaagcgctta gccatcatga agacgccacg gtcttcaccg
     2101 ttgtaatagg cgatgtctgt tcccagcata tcgacgatag cgtcttcacc accgaagccc
     2161 tgcttagcag ccagacggga gagagccttg aggtgtgact catgggcgat gatgccgtag
     2221 tcagaaacct cagaaccgaa agaagactcc gtgttctcgt acagggcatc catgatagcg
     2281 tcagccttag cggtcaggct accagtcagg gccggaagtt ctacggtctt cagcagcttt
     2341 gaggactcca gcacgtcaac catcttagag ttaatggtac gaaccacgtt atcgcagatg
     2401 ttcagtgcgt cctgctggag cgtcccctga gtgaaaccag tggtcgactt ctggtcccaa
     2461 agctttgtct ggtgagacac gaggatagcc tgttcaatcg gctcaacggt gatttcagtg
     2521 ccagacggag cggtcacaac ttcaggtcgc ttaccaccac ggacagggac cagcacagag
     2581 c
//
LOCUS       DADMHM010000311         2509 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.316, whole genome shotgun sequence.
ACCESSION   DADMHM010000311 DADMHM010000000
VERSION     DADMHM010000311.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2509)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2509)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2509
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.316"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(1..193)
                     /locus_tag="JN125_004118"
                     /pseudo
     CDS             complement(1..193)
                     /locus_tag="JN125_004118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706790.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1364 domain-containing protein"
     gene            complement(193..810)
                     /locus_tag="JN125_004119"
     CDS             complement(193..810)
                     /locus_tag="JN125_004119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1367 family protein"
                     /protein_id="HAY8873673.1"
                     /translation="MPPEKADGHIQLIKQTSSGLLLPATPESCDFLHQIKTGEWIHAD
                     FKRVRNYAFHKRFFKLLQLGFDYWTPIGGAITPRERELVSGFVEYLCESVGREHTPAL
                     SEAAEQYLNTVATRRTRDTALLKSFEAFREWVTIQAGFYTEHIYPDGSRGRRAKSISF
                     ANMDETEFQQVYKSVLNVLLNWILFRKFSSPEQVENVAAQLLEFA"
     gene            complement(830..1117)
                     /locus_tag="JN125_004120"
     CDS             complement(830..1117)
                     /locus_tag="JN125_004120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873674.1"
                     /translation="MKIEELREIFSENGLYAVRVENGAIVSHCRIRCLQSQQRKSGAV
                     LFYFCNGLLTDGFILREDEFVTSLRVLKEIGFKAGFLLLLKNKLIYNLEQD"
     gene            complement(1367..1579)
                     /locus_tag="JN125_004121"
     CDS             complement(1367..1579)
                     /locus_tag="JN125_004121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Hok family toxin"
                     /protein_id="HAY8873675.1"
                     /translation="MLCTCRLASYMPKGKEKQAMKQQKAMLIALIVICLTVIVTALVT
                     RKDLCEVRIRTGQTEVAVFVDYESRK"
     gene            complement(1750..2415)
                     /locus_tag="JN125_004122"
     CDS             complement(1750..2415)
                     /locus_tag="JN125_004122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012421537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HAY8873676.1"
                     /translation="MTVADFKRPKLELPNGANKLLLHSCCAPCSGEVMEALQASGIDY
                     TIFFYNPNIHPQKEYLIRKDENIRFAEQHGVPFIDADYDTDNWFERAKGMEWEPERGI
                     RCTMCFDMRFERTALYAAENGFSVISSSLGISRWKNMQQVNDCGRRAVAHYPGMVYWD
                     YNWRKQGGSSRMIEISKREKFYQQEYCGCVYSLRDTNLHRKSQGRPLIKIGQLHYGKE
                     EKE"
BASE COUNT          628 a          656 c          566 g          659 t
ORIGIN      
        1 ctttctccag atttcttgcg tgcgaaaaac accttctgca tgcatcaggc gtaattcttc
       61 tttggtgtaa tcgcttgttt ttacccgcca gtcggtaatg cgccagcaca gacgtttccg
      121 gatcgtgatt gcagtagcca ggaattctga cggtgcacat ctgcccccgc gccgctttac
      181 gtaaatccac cattacgcaa actccagtag ctgcgcggcc acattttcga cttgttccgg
      241 agaggaaaat ttacggaaca ggatccagtt caacagtaca ttcagcacag atttataaac
      301 ctgctgaaac tcggtttcgt ccatattcgc aaacgagatg gatttcgccc tgcgcccacg
      361 gctaccgtcc ggataaatat gctcggtgta aaatccggcc tgaatggtta cccactcgcg
      421 gaaagcctca aacgacttta gcaatgctgt atctcgggtt ctgcgtgtcg caactgtatt
      481 cagatattgc tctgcggctt cgctcagagc tggcgtatgt tcccggccta ctgattcgca
      541 caggtactca acgaagcctg ataccagttc tcgttcgcga ggcgtaatcg ccccaccgat
      601 cggagtccag taatcgaatc ccagttgcag gagtttgaaa aaacgcttgt ggaatgcgta
      661 gttacgcaca cgcttaaagt ctgcgtgtat ccactcacct gttttgattt gatgcagaaa
      721 atcgcaactc tccggcgtcg ccgggagaag taatccggaa gaggtttgtt tgatcagttg
      781 tatatggcca tcggctttct ccggtggcac ggtgttacac agcaggagtt caatcctgct
      841 caagattgta gatgagttta ttcttcagca aaagcagaaa accagcctta aaaccaatct
      901 ctttcaaaac ccgtaatgat gtgacaaatt cgtcctcacg caaaataaaa ccgtccgtca
      961 gaagtccatt acaaaaataa aataacacag caccgctctt cctttgttga gattgcaaac
     1021 atctaatgcg gcaatggctg acaatcgctc cattctcaac gcgcacagca tagaggccat
     1081 tttcactaaa aatttcacgc aattcttcga ttttcatctt cagaatcctt ccagataaat
     1141 agctctcccc tgttcggggt ccatccctct tctccctgcg cgctacttaa gtgagtcgat
     1201 tctatctgcg aaggtgcgcg aatcaaattc accggaaata aacaacaaaa aacccgccga
     1261 aacgctgaga gatcacagcg atgggcgggt taagtgcggg tgcgttgagg atgcctgaca
     1321 catcagaggt gggcggggat gggatcagct ccccgcccgg tcactcttac ttcctggatt
     1381 cgtagtctac gaagacagcg acctccgtct ggccggttcg gattcgtacc tcacagaggt
     1441 ctttcctcgt taccagtgcc gtcactatga cggttaaaca gatgacgatc agggcgatta
     1501 acatcgcctt ttgctgcttc atagcctgct tctccttgcc tttcggcatg taagaggcta
     1561 acctacatgt gcaaagcatg aaattggcct cagattaatg ttaagcgtct tgccggacgc
     1621 gtaatgttaa ctggggcttt tctctatctg ccttttagtg ttcatgcctg aagcagatag
     1681 cctcaagcac ccgcagtcat tctacttacc tcgccaatat gaaatcaatc agaaaggtgc
     1741 cccataaaat cactccttct cttctttacc gtagtggagt tgaccaattt tgataagagg
     1801 gcgtccctga gatttgcggt gtagattggt atcgcgcaga gaatacacac agccacaata
     1861 ttcctgctga tagaattttt cgcgcttgct gatttcaatc atacgggacg agcctccctg
     1921 cttgcgccag ttataatccc agtacaccat gcccggataa tgcgcgacgg ctcgccgccc
     1981 acagtcgtta acctgctgca tatttttcca gcgtgaaatg cccagtgaac tgctgatcac
     2041 actgaaacca ttttcagcgg cgtacagcgc tgtccgctca aaacgcatgt caaaacacat
     2101 ggtgcaacgg atccctcgtt cgggctccca ttccattcct ttggctcgtt caaaccagtt
     2161 gtctgtgtcg taatcagcat caataaacgg cacgccgtgt tgttcagcaa agcgaatatt
     2221 ctcatcctta cgaattaaat actctttctg aggatgaatg ttcgggttgt agaaaaagat
     2281 ggtgtagtcg attcccgagg cctgaagcgc ctccatcacc tcaccggaac atggagcaca
     2341 gcaagagtgc agtagtagtt tgtttgcccc gtttgggagc tccaatttgg gccgtttgaa
     2401 atcagcaact gtcataaata tgtttattgg ggtcataaaa atatcaaaga gtgtagcatt
     2461 agaacggggc tatcggaaac agatgtgtga ctgctccccg ccctttcgg
//
LOCUS       DADMHM010000312         2477 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.317, whole genome shotgun sequence.
ACCESSION   DADMHM010000312 DADMHM010000000
VERSION     DADMHM010000312.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2477)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2477)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2477
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.317"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..845)
                     /gene="ipaH9.8"
                     /locus_tag="JN125_004123"
     CDS             complement(<1..845)
                     /gene="ipaH9.8"
                     /locus_tag="JN125_004123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858359.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector E3 ubiquitin-protein ligase
                     IpaH9.8"
                     /protein_id="HAY8873677.1"
                     /translation="MLPINNNFSLPQNSFYNTISGTYADYFSAWDKWEKQALPGEERD
                     EAVSRLKECLINNSDELRLDRLNLSSLPDNLPAQITLLNVSYNQLTNLPELPVTLKKL
                     YSASNKLSELPVLPPALESLQVQHNELENLPALPDSLLTMNISYNEIVSLPSLPQALK
                     NLRATRNFLTELPAFSEGNNPVVREYFFDRNQISHIPESILNLRNECSIHISDNPLSS
                     HALQALQRLTSSPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHA
                     FEHEE"
     gene            complement(1107..1202)
                     /locus_tag="JN125_004124"
                     /pseudo
     CDS             complement(1107..1202)
                     /locus_tag="JN125_004124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
     gene            complement(1238..1543)
                     /gene="ccdB"
                     /locus_tag="JN125_004125"
     CDS             complement(1238..1543)
                     /gene="ccdB"
                     /locus_tag="JN125_004125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858358.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system toxin CcdB"
                     /protein_id="HAY8873678.1"
                     /translation="MQFKVYAYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSD
                     KVSRELYPVVHVGDESWRMMTTDMASVPIFVIGEEVADLSHRENDIKNAINLMFWGI"
     gene            complement(1545..1763)
                     /gene="ccdA"
                     /locus_tag="JN125_004126"
     CDS             complement(1545..1763)
                     /gene="ccdA"
                     /locus_tag="JN125_004126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system antitoxin CcdA"
                     /protein_id="HAY8873679.1"
                     /translation="MKQRITVTIDSDSYQLLKSANVNISGLVNTAMQKEARRLRAERW
                     QAENQQGMAEIARFIEMNGSFADENRDW"
BASE COUNT          658 a          530 c          581 g          708 t
ORIGIN      
        1 tgctcttcat gttcaaaagc atgccatatc tgtgatacat cagattgttt gttttccggg
       61 aaccatgctg tcacggcatc agccaggggg cgatggagtg tattctgttg tccgtcactc
      121 atggagaagt aaatccgtgg gccgtggtag tccggcgaag aggttaatct ttgcagggct
      181 tgcagagcat gggatgataa tgggttatca ctaatatgta ttgaacattc attcctcaga
      241 ttaagaatgc tttccgggat atgacttatc tgatttctat caaaaaaata ctctctgaca
      301 acgggattat ttccctcaga aaatgctggt agctcagtga ggaaattacg ggtcgctctg
      361 agatttttaa gagcctgtgg gagcgatggt aaggagacta tttcgttata gctgatattc
      421 atagtcaata acgaatcggg taaagctggc aggttttcca gctcattgtg ttgtacctga
      481 agtgactcca gcgcaggagg tagcacgggc aattctgata atttattgct ggcggaatat
      541 aattttttta gcgtaacagg cagttcaggt aggttagtta attgattata tgatacattg
      601 agcagcgtta tctgagctgg taagttgtca ggtagcgagg acagatttaa acggtccagt
      661 cgaagttcat cggaattatt gataagacat tctttaagtc gggagacagc ctcatcacgc
      721 tcttcaccgg ggagcgcttg tttttcccat ttatcccatg ctgaaaagta atcagcatat
      781 gtaccggaaa tagtgttata aaaagaattt tggggcaatg aaaagttatt atttatcggt
      841 aacatgatgg gcatccagtt aaagccggtg gacaaatggc tttgttaaaa gaaataagta
      901 ggagttttta tgaagttcat tccatgaaat gaacttcagc acttttttat tataataagg
      961 ataaacaaaa ttggctgtaa aaaaacgata ctgtttcagt taaccgtgaa tggcctgttt
     1021 gcaccgtatt gttcttgttt ttcggttagt taaacatcgt acttcatatt tgaacggtaa
     1081 gcggctcgtc agaaccgtat tgatatttac tgagaggtca gatcaacttt ccagggcaac
     1141 agatcgcgta cccggtttgc cggccagtct tggatatgct caatgacgta acgcagccat
     1201 tttgtcaacg ccacgatttt tgaccctagc ctgacattta tattccccag aacatcaggt
     1261 taatggcgtt tttgatgtca ttttcgcggt ggctgagatc agccacttct tccccgataa
     1321 cgaagatcgg cacactggcc atatcagtgg tcatcatgcg ccagctttca tccccgacat
     1381 gcaccaccgg gtaaagctca cgggagactt tatctgacag caggcgggca ctggccaggg
     1441 ggatcaccat ccgtcgtccg ggcgtgtcaa taatgtcact ctgtacatcc acaaacaaac
     1501 gataacgact ctctctttta taggcgtaaa ccttaaactg catttcacca gtccctgttc
     1561 tcatcggcaa aagagccgtt catttcaata aaacgggcga tctcagccat cccctgctga
     1621 ttttcagcct gccagcgttc cgcacgcaga cggcgggcct ctttttgcat ggccgtattt
     1681 accaggcctg agatattcac gtttgcggat ttaagtaact gatagctgtc actgtctata
     1741 gtgacagtaa tacgctgctt catgataagc cctcaaaaac atacttatga tatgtatatg
     1801 agtatatatt aatggtacaa accatcaata tccataaaaa gtacaccatt aattcactat
     1861 aagtttttaa tacaattttt tctgctgcga tttttttata cgataattag catacttata
     1921 acaccgtaag taaattacat gaaagcaggc acagcgtgat ccgatttttc tgcgtataac
     1981 gattttccgg aagtgtaata cggttgcgcc ccgggccggg cacccttttc tgttgttgtg
     2041 tacgggccca cagagaatgg taccggaggc gggctcagaa gtactgagtc gggtgatcgc
     2101 gtcaggccgc gaagtactga cacgggtatt ggtgactggt gatgaagtac tgccccgggt
     2161 atgatttcag gctgattcag gttctgattc tctgtcagtc cgcgtggttg ctggcctggc
     2221 tgatttcctg ttgtcaggcg ttcaacaacc gactgcaggt tatagcccgg ttcacgaacc
     2281 acggcagcct ggcggctgca aatcggggtg tggcagaata tgagctttca gagtaaacca
     2341 tccagaatga gttcccatgt cacacaacct ggagcaccag aaagtccaca ccagaatggt
     2401 gaaagaggtt ctgaaagccg tcgccagagc caataatcac ccttataagt ccgtatttgc
     2461 agactttatc accggtc
//
LOCUS       DADMHM010000313         2468 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.318, whole genome shotgun sequence.
ACCESSION   DADMHM010000313 DADMHM010000000
VERSION     DADMHM010000313.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2468)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2468)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2468
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.318"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            1010..1969
                     /locus_tag="JN125_004127"
     CDS             1010..1969
                     /locus_tag="JN125_004127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid stabilization protein"
                     /protein_id="HAY8873680.1"
                     /translation="MLKVSCDDGSTNVKLAWLEDGEVRTSLSGNSFKEGWNPGLFNAG
                     KVYNYVVDEKKYTYDLGSTAVIGTTHVSYQYSTTNLLAIHHALLTSGLQPQDVELTVT
                     LPVTEFFDNDNQPNEERIERKKANVLREISLNKGETFKIKKVNVMPESLPAAFESLKK
                     DKVNKLERSLIIDLGGTTLDCGLILGAFEGISEIRGYSEIGTSRITHTVMNALTKAST
                     PCNYFIADELIKNRHDNEYLQTLINDVAEIKNISHIIDREVKSLAESIRQEISTFSGM
                     NRIYLTGGGAELIYPHIKQYFPNLKVNKVDEPQFALVKAMVHA"
     gene            1969..2364
                     /locus_tag="JN125_004128"
     CDS             1969..2364
                     /locus_tag="JN125_004128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid stabilization protein"
                     /protein_id="HAY8873681.1"
                     /translation="MESSDPKKRKKVVAYLHPALYPQDNLTQQTIDSLPVQMRGDFYR
                     QSLICGAALYSVDPRLLTLISGFFSEKITAENLVKLIEQTTGYTSTSIDISVLKNIIE
                     ASSENKSESITSKDDFEEQTRRNLSMLKK"
BASE COUNT          816 a          565 c          509 g          578 t
ORIGIN      
        1 tcgtaatgaa agacccagtg gaagtctgcc cgctttcgcg tagggtaatg ttgccgggct
       61 caacccttat ccggtccatt acagactggc attcgctttt tccaccttct tttacccgca
      121 ccgccaacag tatcccttgc ggttaacctg cctcacgagg cagcgatacg ggcttaccat
      181 gttccacctg aataacaaca gtaggttaga ctctgctcac aacaccggtg gtttattgtc
      241 cgtgtacccc tagcaaacag aggagtaacc aaccacatac cttttggttc aagcctgtca
      301 gcatctttgg cttgttctgg ttaacgacgc ttcagcagtt cacatatgtt agtcatgcta
      361 ccgagcctag acctcctccg cctgatgctg gcagattaca tgtaacctca cggtttcatg
      421 cgatccgaag atccggtttc attgtcctga cagcttcaca ccccaccgtt accagtgacg
      481 catgtgtcag taggctactg atgacggaac atcaggttcc ctgacggaat cgaactccgc
      541 tggaacaatt attcaggcga cttcatgtcg cacattcgag caccagtttg gcatgggaat
      601 tctcctctca catgcggcct ccatcaggcc gtgccgcacc tgtaaccggg cgaccgcata
      661 cgaatgcagg tgcggccccg aagccgcagc gcgtggagga ggaacgacga aacgtgaccg
      721 ggtgaggagg ccggcgacag cgacacactt gcatcggatg cagcccggtt aacgtgccgg
      781 cacggcctag ttaagtagta tccgtctcag ttcgtggcgc aaaatgagaa accaataaga
      841 actcaaaatg aaccacaaca agaacataaa gagactctaa aagaacaaca ccgcttgaca
      901 tagactcaaa atgagtcaca ataagaaaca ataaaaaact caaaaagata caccgacata
      961 aaggatgctc aatttgagat aaacacaaac tcaaaacgag gcaaaaagaa tgctaaaagt
     1021 atcatgcgat gatggttcaa ctaacgtaaa actggcctgg cttgaagatg gcgaggtaag
     1081 aaccagtctg tcaggaaaca gctttaaaga aggctggaac ccgggactgt ttaatgccgg
     1141 caaagtgtac aattacgtcg tggatgaaaa aaaatacacc tatgatttgg gaagcactgc
     1201 tgtcataggt acaacacatg tcagttatca atacagcacc accaatctgc ttgccataca
     1261 tcatgcactg ctgacatccg gccttcagcc acaggatgta gaactgacag taacattacc
     1321 tgtgaccgaa ttctttgata atgacaatca accaaatgaa gaaagaatag aaagaaaaaa
     1381 ggcaaatgtt ctccgtgaga tatctctgaa taaaggggaa acatttaaaa ttaaaaaagt
     1441 taatgtaatg cctgaatctt tgccagctgc atttgaatca ctaaaaaaag ataaagtaaa
     1501 caaacttgaa cgcagcctga ttatcgatct tggaggaacc actctggatt gtggtttaat
     1561 tctcggtgca tttgaaggca tttctgaaat ccgtggctat tcagaaatcg ggacatcccg
     1621 catcactcat accgtcatga atgcgctgac gaaagcctcc acaccatgta attattttat
     1681 tgctgatgag ttaataaaaa acagacacga taatgaatat ctccagacat taataaatga
     1741 tgtagctgaa ataaaaaaca tttctcatat aatagacaga gaagtgaaat ctctggcaga
     1801 aagcatcagg caggaaattt caacattctc aggaatgaac cgaatctatc tcactggcgg
     1861 aggagccgag cttatttacc ctcacataaa gcaatatttc ccgaatctga aagtgaacaa
     1921 ggtggatgaa cctcagtttg cattggtgaa agcaatggtg catgcgtaat ggaaagcagt
     1981 gatccaaaaa aaagaaagaa agttgtggca tacctgcacc cggcacttta tccgcaggac
     2041 aacctgacac aacaaacaat agactctctc ccagtacaaa tgcggggaga tttctacaga
     2101 caatccctta tttgcggagc agctctttat tctgttgacc cccgactgtt aacgctaatc
     2161 agcggttttt tcagtgagaa aatcactgca gaaaatctgg tgaaacttat agaacaaaca
     2221 acaggataca catccacatc aattgatata agtgtgttaa aaaacatcat agaggcatct
     2281 tcagaaaaca aatcagagag catcacttca aaagatgatt tcgaagaaca aaccagacgc
     2341 aatctttcta tgttaaaaaa ataataaaaa atcagattct tacgaatatt cagattatca
     2401 taaaaaatgc aacagacagg aatgcaataa ttttgcatta tctcgttgct tgtaatgcaa
     2461 atatgcat
//
LOCUS       DADMHM010000314         2432 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.319, whole genome shotgun sequence.
ACCESSION   DADMHM010000314 DADMHM010000000
VERSION     DADMHM010000314.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2432)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2432)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2432
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.319"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            59..403
                     /locus_tag="JN125_004129"
     CDS             59..403
                     /locus_tag="JN125_004129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdfR family protein"
                     /protein_id="HAY8873682.1"
                     /translation="MTQNYELIVKGIRNFENKVTVTLALRDKKRFDGEIFDLDISLDR
                     VEGAALEFYEAAARRSIRQVFLDVAAGLCEGDEQSPEKRPVILEAQDVLITYRGKLPG
                     IITGSLKSPPKW"
     gene            complement(369..641)
                     /locus_tag="JN125_004130"
     CDS             complement(369..641)
                     /locus_tag="JN125_004130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000369850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873683.1"
                     /translation="MDNNTISLQELLDSISRLREDVNTLTVAFSYLAFSIPREQMQST
                     LASIQFESCNPKWSQEQQDSFRRLAVLLDEKYAGKITISADSSENP"
     gene            747..1280
                     /locus_tag="JN125_004131"
     CDS             747..1280
                     /locus_tag="JN125_004131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysozyme"
                     /protein_id="HAY8873684.1"
                     /translation="MNAKIRYGLSAAVLALIAAGAPAPDILDQFLDEKEGNHTTAYRD
                     GAGIWTICRGAILVDGKPVVPGMKLSKEKCDQVNAIERDKALAWVEKNIKVPLTEPQK
                     SGIASFCPYNIGPGKCFSSTFYRKLNAGDRKGACAEIRRWIYDGGRDCRNRSNNCYGQ
                     VSRRDQESALACWGIDR"
     gene            1501..1614
                     /locus_tag="JN125_004132"
     CDS             1501..1614
                     /locus_tag="JN125_004132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873685.1"
                     /translation="MKGIEVETPASLDLTRAAAFAIRIVAIAVLVWAIRWW"
     gene            1616..2083
                     /locus_tag="JN125_004133"
     CDS             1616..2083
                     /locus_tag="JN125_004133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysis protein"
                     /protein_id="HAY8873686.1"
                     /translation="MNRVLCVVIIALLVACGALSLGLNHYRVHAIIYKEQRDKKASEL
                     ELANATITDMQIRQRDVAALDARYSRELADARAENETLRADVAAGRKRLRINATCSGT
                     VREATGTSGVDNATGPRLADTAERDYFILRERLMTMQKQLEGAQDYIRTQCLN"
BASE COUNT          627 a          530 c          694 g          581 t
ORIGIN      
        1 aacctgtatt tcaaaatcag agaggaccgt cgtaaggctg cacggggaga gtaattcaat
       61 gactcaaaac tatgaactga ttgtgaaagg gatccgcaat tttgagaata aagttacggt
      121 aactttagcg ttacgggaca aaaaacgctt tgacggtgaa atttttgacc tggacatctc
      181 gctggaccgt gttgaaggtg ccgcgctgga gttttatgag gcagcagcca gaaggagcat
      241 cagacaggtc ttcctggatg ttgctgccgg gttatgtgaa ggggatgagc agtcgccgga
      301 aaagcgcccc gtaattttag aggcgcagga tgtgttgata acctacagag gaaaactacc
      361 gggaataatt acgggttctc tgaagagtcc gccgaaatgg taattttacc agcatatttt
      421 tcatccagta atacagcaag ccgcctgaaa gagtcttgtt gttcctgaga ccatttggga
      481 ttgcatgatt caaactggat tgatgccagc gttgattgca tctgttccct tggaattgag
      541 aatgccagat atgagaaggc gacggtaagg gtattcacgt cttcccgaag cctggaaatg
      601 ctgtcgagca actcctgtag agaaatggtg ttattgtcca taaataatcc tcatgattgt
      661 attgacctgt tagcagcctg aggcaacagg ctggaactga taaacatatc cagggctcag
      721 aaaccgataa atcctgataa atatccatga acgcaaaaat cagatacggc ctgtcggctg
      781 ccgttctggc gctgattgcc gctggtgcgc ctgcgcctga cattctcgac cagtttctgg
      841 atgaaaagga aggtaaccac accacggcat accgtgatgg cgcgggtatc tggaccatct
      901 gccgcggtgc cattctggtg gatggtaaac ctgtcgtccc gggcatgaag ttgtcgaagg
      961 agaaatgcga ccaggttaac gccattgaac gtgataaggc gctggcatgg gtggagaaaa
     1021 acatcaaagt gccgctgacc gaacctcaga aatcggggat cgcgtcattc tgtccgtaca
     1081 acattggccc cggtaagtgt ttcagctcaa cgttttaccg gaaactgaac gccggagacc
     1141 ggaaaggtgc atgtgctgaa attcgtcgct ggatatatga cggcggcagg gactgtcgga
     1201 accgctcaaa taactgttac gggcaggtat cgcggcgtga ccaggagagc gcgctggcgt
     1261 gctggggtat cgacaggtag cagaatattt tgctgaaaaa tgacgcttgc tcacgcgggc
     1321 ggataacacg aagtcctgtg aactggcaaa acctaagtga ataaaagtaa aaaccccgtt
     1381 tgttggcagc aagcggggtt ttgtgttttc tgaccttgag taaggcaagg gagaaattat
     1441 ggtgagggag gtgctttccc tgtgaggaag tataaaagat tctttctgag gttgtccatt
     1501 atgaaaggca ttgaagtgga gacgccagcc agtctggatt taacaagagc ggcagctttt
     1561 gccattcgta ttgtggcaat tgctgttctg gtttgggcaa tccgttggtg gtgatatgaa
     1621 ccgtgttttg tgcgtggtca tcattgccct gctggtggcc tgtggtgcgc ttagtctggg
     1681 gctgaatcat taccgtgttc acgccatcat ctacaaagag cagcgcgata aaaaagccag
     1741 tgagctggag ctggcgaacg cgacaattac tgatatgcag atacgccagc gtgatgtcgc
     1801 tgcacttgat gccagatact cgagggaatt agccgatgcg agagctgaaa atgaaactct
     1861 gcgtgctgat gttgccgctg gtcgtaagcg cctgcggatc aacgccacct gctccggtac
     1921 cgtgcgtgaa gccaccggca cctccggcgt ggataatgca accggccccc gactggcaga
     1981 caccgctgaa cgggattatt tcatcctcag agaacggttg atgacaatgc agaagcagct
     2041 ggaaggggca caggactata tccgcactca gtgcctgaac taagttttgc tgatgcgccg
     2101 tatcgtcgct gtattccctc attaacagag accgcagccc gacagggaga ctcctctgcg
     2161 cgagtgtgcg gggataatct aaaacgatac acaccggggt ttaccgcgtt aacggagcgc
     2221 ggcgttgtcc cctcatagtc gccagtccgg tgcgatggtg gaagaaacag gacgatgtgt
     2281 tacctcgcaa gccctgttat gtcatgtgtc tgatttgtga tttaagtcgg ataattgtcg
     2341 ttgccattaa gcagaggatt gatgaccgac agggcggcat tgttagaata agacttattt
     2401 ttatctgtgc ggggaatgaa aatgaaaaga aa
//
LOCUS       DADMHM010000315         2407 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.320, whole genome shotgun sequence.
ACCESSION   DADMHM010000315 DADMHM010000000
VERSION     DADMHM010000315.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2407)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2407)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2407
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.320"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(1..925)
                     /locus_tag="JN125_004134"
                     /pseudo
     CDS             complement(1..925)
                     /locus_tag="JN125_004134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
     gene            complement(976..1551)
                     /locus_tag="JN125_004135"
                     /pseudo
     CDS             complement(976..1551)
                     /locus_tag="JN125_004135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001368704.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            1555..1955
                     /locus_tag="JN125_004136"
                     /pseudo
     CDS             1555..1955
                     /locus_tag="JN125_004136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000998048.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="IS66 family transposase"
BASE COUNT          538 a          690 c          599 g          580 t
ORIGIN      
        1 agggcaacag atcgcgtacc cggtttgccg gccagtcctg gagatgctca ataacgtaac
       61 gcagccattt ttctggctct acattgttca gacggcatgt gccgatcagc gagtacaaca
      121 ccaccgcatg ttcgccaccg ctgtcggaac ccgcgaagag ccagtttttc cggcctacgg
      181 ccactccccg taaggcgttc tctgcgatgt tgttgtcgat ttccacccag ccattactgc
      241 agtacacgtt cagggccttc cactgtttca gtaggtatgc gaacgctttt gccgtatccg
      301 agtgacgcga cagtgttttc atctgttgct gtatccggtc atacagtgac tgcatcagtg
      361 gcgcggctct tgcttttctt gccgccagac gctgttctgc tgaacatccc cggacttctg
      421 cctcgatggt atacagttca ccgatacgct gcagggcttc cgtggtgatg tcggttggca
      481 ctcttgcatg cacatcgtgg atttttctcc gggcatgggc catacacgcg gcttccgtta
      541 ttctgccgga ttcgtataac gcccggtaac caccgtaagc atctgcctga agcacaccgc
      601 tgtaaccggc caggtgattc tgtggatgga tacctttccg gtccgggctg tacgcgaacc
      661 agaccgccgg gggcatctgt gaaccggcgt tacggtcatc acggacatag acccacagcc
      721 gggcagttct tgttttacca ctgcccggct cctggaccgg aacggggata tcatccgcat
      781 gaactttacc gggcatcagc acatactggc gcaggacgtc atacagcggc tccagcagtt
      841 cagcaacggc accggtccag cgacccagtg tggcacggct cagctccacg ccctgacgac
      901 ggtatatttc tgactggcgg tataactgtc aacgacggat gaaaagtggc tcttccgcaa
      961 cctgggtgga gattttcatg ccagtggact cattaccctc tgcctgagta gttcaaatcc
     1021 tgctcgacca tacatctggc gtttcagcat cttcttcagg cgatttacat gaccttcgac
     1081 aacaccatta ctccagcgac tactgattgc ctcacatata gctgcagcat cagcttgcat
     1141 ccccgccgcc acgcgccgaa attctgctga accgctttcg tggactcgag tgaaccaact
     1201 gcttagctgt gatttatttt gggttttcag aatacggtag aactcgagtg ccagttgctg
     1261 cgctattttc agctcaggtt ctttttcaca catcagacta ataaatcggg aagcataatt
     1321 ttcttcatcc ctggttattc tccagggcat caaccagcgg cttacccggg acactgaagg
     1381 aagtctgacg gcagtagtaa ccggtgggtt ccagccttta cgccatttgg caaccgcatc
     1441 cctgacgatg gtttcactgc ctgtaaatcc ccgggccacc atttcccgcc atatccggct
     1501 ggcgttataa ttaccacttt ctcgttgctc ttttaaccac tccctccatg gtgtcagcga
     1561 aaaacgaaac cgctgttgaa atccctggaa agctggttgc ggaaaagatg aagaccctgt
     1621 cgcgacactc agagttggcg aaggcgttcg cgtacgcact taaccagtgg ccggcactga
     1681 cgtactatgc gaacgatagc tgggtggaaa tcgacaacaa catcgctgaa aatgccttgc
     1741 gggcggtcag tctgggtcgt aaaaacttcc tattcttcgg ctctgaccat ggtggtgagc
     1801 ggggagcgct actgtacagc ctgatcggga cgtgcaaact gaatgacgtg gatccagaaa
     1861 gctaccttcg ccatgtgctt ggcgtcatag cagactggcc ggtcaaccgg gtcagcgaac
     1921 tgcttccgtg gcgcatagca ctgccagctg aataacacat ccccgtcaat acggccctcg
     1981 ctgtacgctt actcatcacc tgctattaat ccccgagtca gtacttcgcg gcctgacgcg
     2041 atcaccctac tcagtacttc agagcccgcc tccggtacct gcctggcgat cgcccctgtg
     2101 caacaaaata aatcaaccgt tatcaaacca cgatcgttcg tatgcgccgc cgatgacgcg
     2161 cgcctgaaaa acgcgtcaat atgagttccc cggaagctta cgataatacg cttatgaaca
     2221 ttacaacacg ctcatgcgga acctggatgg gggaaggaac ggtgaagctg ttagcgaatg
     2281 accggcgttt gtataaacgc cggtcatgat gaatgatatt tcagaatata cctcgggcta
     2341 aaataccggg acagagatca ggcgtgatta atctgcagca tttttaataa cagaagtact
     2401 gagctta
//
LOCUS       DADMHM010000316         2395 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.321, whole genome shotgun sequence.
ACCESSION   DADMHM010000316 DADMHM010000000
VERSION     DADMHM010000316.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2395)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2395)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2395
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.321"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            86..1006
                     /locus_tag="JN125_004137"
     CDS             86..1006
                     /locus_tag="JN125_004137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415843.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HAY8873687.1"
                     /translation="MMNNKVSFTNSNNPTISLSAVIYFPPKFDETRQYQAIVVSHPSG
                     GVKEQTAGTYAKKLAEKGFVTIAYDASYQGESGGEPRQLENPYIRTEDISAVIDYLTT
                     LSYVDNTRIGAMGICAGAGYTANAAIQDRRIKAIGTVSAVNIGSMFRNGWENNVKSID
                     ALPYVEAGSNARTSDISSGEYAVMPLAPMKESDAPNEELRQAWEYYHTPRAQYPTAPG
                     YATLRSLNQIITFDAYHMAEVYLTQPMQIVAGSQAGSKWMSDDLYDRASSQDKRYHIV
                     EGANHMDLYDGKAYVAEAISVLAPFFEETL"
     gene            1006..1937
                     /locus_tag="JN125_004138"
                     /pseudo
     CDS             1006..1937
                     /locus_tag="JN125_004138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012562879.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
     gene            1955..>2395
                     /locus_tag="JN125_004139"
     CDS             1955..>2395
                     /locus_tag="JN125_004139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309933.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HAY8873688.1"
                     /translation="MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYP
                     TNSKIIMGDVLNHAALKQAMQGQDVVYANLTGEDLDIQANSVIAAMKACDVKRLIFVL
                     SLGIYDEVPGKFGEWNNAVIGEPLKPFRRAADAIEASGLEYTILR"
BASE COUNT          678 a          518 c          593 g          606 t
ORIGIN      
        1 tttagggtct aatcaactta atgatcaata tctatagtga tatcaccaac cgttaaaacg
       61 aaccgacaac tccatgagga acggaatgat gaataataaa gtcagcttca ctaacagcaa
      121 taatccaacc atctctttgt ctgcagtgat ctatttccct ccaaaatttg atgaaacccg
      181 tcagtatcag gcaattgtgg tatctcaccc aagtgggggc gttaaagaac aaacggccgg
      241 aacctatgcc aaaaaactgg cggaaaaggg atttgtcact attgcttatg acgcatctta
      301 tcaaggtgaa agtggcggcg agccgcgtca gttagaaaac ccatacattc gtactgaaga
      361 catcagtgcc gtgattgatt acctgacaac gctttcttat gtcgacaata cccgaattgg
      421 tgcgatggga atttgtgccg gtgcaggata tacagccaat gctgcaattc aggatcgccg
      481 catcaaggcc atcggtaccg ttagtgcggt caatattggt tcgatgttcc gtaatggttg
      541 ggaaaacaat gtgaaatcta ttgatgccct gccatacgtt gaagcgggtt caaacgcccg
      601 aaccagcgat attagcagcg gagaatatgc cgttatgcca ctggcaccaa tgaaggagtc
      661 cgatgcgccg aacgaagaac tgcgtcaggc ctgggagtat taccacaccc ctcgcgcgca
      721 gtatccaaca gcaccgggtt acgctacttt gcgcagcctt aaccagatta ttacctttga
      781 tgcttaccat atggcggaag tgtacctgac tcagccgatg cagattgtgg cgggcagcca
      841 ggcagggagc aaatggatga gtgacgatct gtacgatcga gcatcaagcc aagataaacg
      901 ctatcacatt gttgaaggcg caaaccatat ggatctttat gacggcaaag cctatgtggc
      961 tgaagcaatt tcagtattag ctccgttctt tgaggaaact ctgtaatgaa acatattcaa
     1021 atccgcaata gtgatatggc ctggcatatt gctgccaata ttcagtttcc accaaatttt
     1081 gatgagtcaa aacagtatcc ggcgattatc agcgtccatc cttttggcag ttgtaaggag
     1141 cagacgtctg gcaatatcta tggcaaagca ttggctgaaa aaggctatct cgttctcgct
     1201 tatgacgcca gtttccaggg agaatctggt ggggagcctc gctggataga agatccgaca
     1261 cagcgcgtag aggatattag ccgtgttatc gattatgcag taactctgcc atatgttaat
     1321 gctgaacgta ttggcgtgct gggagtgtgt gggggtggtg gctatgccat taatgccgcg
     1381 ctgacagaaa aacgaattaa agcagtagtg agtattacgg gtgttaatat cgggcgtctt
     1441 tttcgggaag gtttcagcaa ttacgatccg attggcgcat tgaatgcaat ggcgtcgcaa
     1501 cgaaccaaag aggctcgtgg tggagattac agatcaacga attacttccc gccagcctgg
     1561 atgcagcaaa agcccatgga ctgaccgaac gcgatgttta tgaagcaact gactactata
     1621 aaacaccacg cgggcaacaa ccgggaggtg cgacaaaaat gttgttctca catgcacaga
     1681 aaacgctggc ctgggatgcc ttcgcattta ctgaagtgtt actgactcag ccggtgatgg
     1741 tagtagttgg tgaaaaagtc ggtgccttcg gtgcttatcg tgatggactg gaagtctatg
     1801 gccgggcgat ggtttcgcag gatcgtcagt tagtttcatt acccgatttc tcacattatg
     1861 aactgtatga caaaccggaa gcagttcagg aggcgctgga aaaagttatt ccttttttca
     1921 acccccatct gggataagtt tcatgagaaa tattatgaaa aatgtactga ttcttggtgc
     1981 tggcggtcag atagcccgcc atgtgattaa tcaactggca gataaacaaa ccattaaaca
     2041 aactttattt gcccgtcagc cagcaaaaat ccacaaaccc tatccaacta atagcaagat
     2101 tattatggga gatgtactga atcatgcagc actgaagcag gccatgcagg gacaggacgt
     2161 tgtgtatgcc aaccttacgg gggaagattt agatattcag gcaaattcag tgatcgctgc
     2221 gatgaaagcc tgtgatgtta aacgtctgat ctttgttctt tccctcggta tttatgatga
     2281 agttccagga aaatttggcg aatggaataa tgcagttatt ggtgaacccc taaaaccatt
     2341 ccgcagggct gcggatgcaa ttgaggcttc tggactggaa tatacaattc ttcgc
//
LOCUS       DADMHM010000317         2371 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.322, whole genome shotgun sequence.
ACCESSION   DADMHM010000317 DADMHM010000000
VERSION     DADMHM010000317.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2371)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2371)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2371
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.322"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            131..406
                     /gene="frmR"
                     /locus_tag="JN125_004140"
     CDS             131..406
                     /gene="frmR"
                     /locus_tag="JN125_004140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414891.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formaldehyde-responsive transcriptional
                     repressor FrmR"
                     /protein_id="HAY8873689.1"
                     /translation="MPSTPEEKKKVLTRVRRIRGQIDALERSLEGDAECRAILQQIAA
                     VRGAANGLMAEVLESHIRETFDRNDCYSREVSQSVDDTIELVRAYLK"
     gene            441..1550
                     /locus_tag="JN125_004141"
     CDS             441..1550
                     /locus_tag="JN125_004141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-(hydroxymethyl)glutathione dehydrogenase"
                     /protein_id="HAY8873690.1"
                     /translation="MKSRAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDA
                     FTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGK
                     TNLCVAVRETQGKGLMPDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEAN
                     HEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVFGLGAIGLAVVQGARQAKAGRIIAID
                     TNPKKFDLARRFGATDCINPNDYDKPIKDVLLDINKWGIDHTFECIGNVNVMRAALES
                     AHRGWGQSVIIGVAGSGQEISTRPFQLVTGRVWKGSAFGGVKGRSQLPGMVEDAMKGD
                     IDLEPFVTHTMSLDEINDAFDLMHEGKSIRTVIRY"
     gene            1643..>2371
                     /gene="fghA"
                     /locus_tag="JN125_004142"
     CDS             1643..>2371
                     /gene="fghA"
                     /locus_tag="JN125_004142"
                     /EC_number="3.1.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-formylglutathione hydrolase"
                     /protein_id="HAY8873691.1"
                     /translation="MELIEKHASFGGWQNVYRHYSQSLKCEMNVGVYLPPKAASEKLP
                     VLYWLSGLTCNEQNFITKSGMQRYAAEHNIIIVAPDTSPRGSHVADADRYDLGQGAGF
                     YLNATQAPWNEHYKMYDYIRNELPDLVMHHFPATAKKSISGHSMGGLGALVLALRNPD
                     EYVSVSAFSPIVSPSQVPWGQQAFAAYLGENKDAWLDYDPVSLISQGQRVAEIMVDQG
                     LSDDFYAEQLRTPNLEKICQEMNIK"
BASE COUNT          569 a          572 c          653 g          577 t
ORIGIN      
        1 ttcctctttg ttttccgacc acattcaccg gataaatttt attctccagt gttatatact
       61 ataggggggt atgcattgac atatagcata cccccctata gtatattgcg tgcagataat
      121 gaggtgcgaa atgcccagta ctccggaaga gaagaaaaag gtccttactc gagttcgtcg
      181 tattcgaggg cagattgatg ctctggaacg gtcgctggag ggtgatgccg aatgccgtgc
      241 catactccaa cagatcgctg ccgttcgggg cgcggctaat gggctgatgg cagaagtgct
      301 tgaaagccat atccgggaaa cgtttgaccg aaatgactgc tacagccgcg aagtcagcca
      361 atccgttgac gacactattg aactggttcg agcctatctt aaatagctga atctattacc
      421 atattgagga agagcgagag atgaaatcac gtgctgccgt tgcatttgct cccggtaaac
      481 cgctggaaat cgttgaaatt gacgttgcac caccgaaaaa aggtgaagtg ctgattaaag
      541 tcacccatac cggcgtttgc cataccgacg catttaccct ctccggggat gacccggaag
      601 gtgtattccc ggtggttctc ggtcacgaag gggccggcgt tgtggttgaa gtcggtgaag
      661 gcgtaaccag cgtcaaacct ggcgaccatg tgatcccgct ttacaccgcg gagtgcggcg
      721 agtgtgagtt ctgtcgttct ggcaaaacta acctctgtgt tgcggttcgc gaaacccagg
      781 gtaaaggctt gatgccagac ggcaccaccc gtttttctta caacgggcag ccgctttatc
      841 actacatggg gtgctctaca ttcagtgaat acaccgtggt cgcggaagtg tctctggcca
      901 aaattaatcc agaagcaaac catgaacacg tctgcctgct gggctgtggc gtgaccaccg
      961 gtattggcgc ggtgcacaac acagctaaag tccagccagg tgattctgtt gccgtgtttg
     1021 gtcttggcgc gattggtctg gcagtggttc agggcgcgcg tcaggcgaaa gcgggacgga
     1081 ttatcgctat tgatacgaac ccgaagaaat tcgatctggc gcgtcgcttc ggtgctaccg
     1141 actgcattaa cccgaatgac tacgacaaac cgattaaaga tgtcctgctg gatatcaaca
     1201 aatggggtat cgaccatacc tttgaatgca tcggtaacgt caacgtgatg cgtgcggcgc
     1261 tggaaagtgc gcaccgcggc tggggtcagt cggtgatcat cggggtcgcg ggttctggtc
     1321 aggaaatctc cacccgtcca ttccagttgg tcactggtcg cgtatggaaa ggttccgcgt
     1381 ttggcggcgt gaaaggtcgt tcccagttac cgggcatggt tgaagatgcg atgaaaggtg
     1441 atatcgatct ggaaccgttt gtcacgcata ccatgagcct tgatgaaatt aatgacgcct
     1501 tcgacctgat gcatgaaggc aaatccattc gaaccgtaat tcgttactga tttcccgcag
     1561 gtataccccg tccacttcag acggggttct taatactctc cccgggcagc cgtccggggg
     1621 attaaccgtg agataatgac tgatggaact cattgaaaaa catgccagct ttggcggctg
     1681 gcaaaatgtg tatcggcatt attcccaatc attgaaatgt gaaatgaatg tcggcgtcta
     1741 tctcccgcca aaagccgcaa gtgaaaaatt accggtgctg tactggcttt cgggcctgac
     1801 ctgcaatgag cagaatttca ttactaaatc ggggatgcag cgttacgcgg ctgagcacaa
     1861 cattattatt gttgcgccgg acaccagtcc gcgaggcagt catgtcgcag atgccgaccg
     1921 ttacgatctc gggcaaggtg ccgggtttta cctgaacgcg acgcaagcgc cgtggaatga
     1981 acattacaaa atgtatgact atatccgcaa cgagctgccg gatttagtga tgcatcattt
     2041 tccggcaacg gccaaaaagt ctatctctgg tcattctatg ggcgggctgg gcgcgctggt
     2101 gctggcgtta cgtaacccag atgaatatgt cagcgtctcg gcgttttcgc ccattgtctc
     2161 cccatcgcaa gtaccgtggg gacagcaagc ctttgccgca tatcttggtg aaaataaaga
     2221 tgcctggttg gattacgatc cggtgagtct tatttcacaa ggtcaacgcg ttgcggaaat
     2281 catggttgat caggggttga gtgatgattt ttacgcggaa cagctgcgga ctccaaatct
     2341 tgaaaagatc tgccaggaga tgaatatcaa g
//
LOCUS       DADMHM010000318         2354 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.323, whole genome shotgun sequence.
ACCESSION   DADMHM010000318 DADMHM010000000
VERSION     DADMHM010000318.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2354
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.323"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(81..2300)
                     /locus_tag="JN125_004143"
     CDS             complement(81..2300)
                     /locus_tag="JN125_004143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YgiQ family radical SAM protein"
                     /protein_id="HAY8873692.1"
                     /translation="MSSISLIQPDRDLFSWPQYWAACFGPAPFLPMSREEMDQLGWDS
                     CDIILVTGDAYVDHPSFGMAICGRMLEAQGFRVGIIAQPDWSSKDDFMRLGKPNLFFG
                     VTAGNMDSMINRYTADRRLRHDDAYTPDNVAGKRPDRATLVYTQRCKEAWKDVPVILG
                     GIEASLRRTAHYDYWSDTVRRSVLVDSKADMLMFGNGERPLVEVAHRLAMGEPISEIR
                     DVRNTAIIVKEALPGWSGVDSTRLDTPGKIDPIPHPYGEDLPCADNKPVAPKKQEAKA
                     VTVQPPRPKPWEKTYVLLPSFEKVKGDKVLYAHASRILHHETNPGCARALMQKHGDRY
                     VWINPPAIPLSTEEMDSVFALPYKRVPHPAYGNARIPAYEMIRFSVNIMRGCFGGCSF
                     CSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANMYMLRCKSPRAE
                     QTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYDIAVEDPRYI
                     KELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGKEQYLIPY
                     FISAHPGTRDEYMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKNPLAKIGYK
                     SEDVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLVPAPTIE
                     EMREARRQNRNTRPALTKHTPMATQRQTPATAKKASSTQSRPVNAGAKKRPKAAVGR"
BASE COUNT          548 a          638 c          626 g          542 t
ORIGIN      
        1 cggcatataa ataaatgcct aatgagatag attctgatgt aatatccccg gtagcaattc
       61 tgctaccggg aacagcgaat ttaacgtcca accgccgctt taggccgttt cttcgcacca
      121 gcattcaccg gacgagattg cgtagacgac gctttttttg ccgtagcagg cgtctgacgc
      181 tgggtcgcca tcggcgtatg tttcgtcaac gccggacggg tattgcggtt ctggcgacga
      241 gcttcacgca tctcttcaat ggttggcgca ggcactaagc aatcgcgacg gctaccaatc
      301 agatgctttt tacccatcgc ttccagcgcc tggcggatta acggccagtt tgccggatcg
      361 tggtaacgca acaacgcttt atgcaaacga cgctgcttgt cgcccttcgg tacgaagacg
      421 tcttcactct tataaccaat cttcgccagc gggtttttcc cggtgtaata catggtggtt
      481 gagttcgcca gcggcgatgg gtagaagttc tgtacctggt cgagacggaa acgatgcttt
      541 ttcagccaca gcgccagatt caccatatat tcatcacgcg taccggggtg cgcggagatg
      601 aaatagggga tcagatactg ctctttacct gcctgttttg agtaagtatc gaacagctct
      661 ttaaagcggt catagctgcc catgcccggc ttcatcatct tcgataacgg cccttcttcg
      721 gtatgttccg gggcaatctt cagataaccg ccgacgtgat gggtcgccag ttctttgata
      781 tagcgcggat cttccacggc gatgtcataa cgcacaccag aggcaatcag gatcttttta
      841 atgcctttca gatcacgcgc acggcgatag aggttgatcg ttggttcgtg gttcgtgtcc
      901 atgtgcggac aaatatccgg ataaacgcac gacaaacggc ggcaggtttg ctcagcgcgt
      961 ggcgatttgc agcgcaacat atacatgttg gcagttggcc caccgagatc ggaaattacg
     1021 cccgtaaaac ctggaacggt gtcgcggatc gcttcgatct cattaatgat cgaatcttcg
     1081 gaacggctct gaataatgcg cccttcgtgc tcggtgatag aacagaaaga gcagccgcca
     1141 aagcagccac gcataatgtt gaccgaaaaa cggatcattt cgtaagccgg aatacgggca
     1201 ttgccatagg ccggatgtgg cacgcgcttg tatggcagcg caaaaacgct gtccatctct
     1261 tcggtagaaa gcggaatagc aggcgggttg atccacacat agcggtcgcc gtgtttttgc
     1321 atcaatgcgc gggcacagcc tgggttggtt tcgtggtgca gaatacgcga agcatgggcg
     1381 tacagcactt tatcgccctt cactttctcg aaagaaggca gcaacacgta ggttttttcc
     1441 cacggtttcg ggcgcggtgg ctgcacggtt acggctttgg cttcctgctt tttcggtgcc
     1501 accggtttgt tatccgcgca cggcaaatct tcaccatacg gatgcgggat tgggtcgatt
     1561 tttccagggg tatcaagacg ggtggaatcc acgccgctcc agccaggcag ggcctctttc
     1621 acgataatcg cggtattacg cacatcgcgg atttcactaa tcggctcgcc catcgccaga
     1681 cggtgcgcca cctccaccag cggacgctca ccgttaccaa acatcagcat gtcggctttc
     1741 gaatccacca gcacggaacg gcgcacggta tcggaccagt aatcataatg tgcggtacga
     1801 cgcagactag cctcaatacc gccgaggatc accggtacat ctttccacgc ctctttacaa
     1861 cgctgggtat aaaccagtgt ggcgcgatcc gggcgcttac ccgcgacgtt atccggcgtg
     1921 taggcatcgt catgacgtaa acggcgatcg gcggtataac ggttgatcat cgaatccatg
     1981 ttgccagcag taacaccgaa aaacagattc ggtttaccca gacgcataaa gtcgtctttg
     2041 ctgctccagt ccggctgggc gatgatcccg acgcgaaagc cctgcgcttc cagcatacga
     2101 ccgcaaatcg ccatcccgaa gcttgggtga tcgacatacg cgtcgccagt aaccaaaatg
     2161 atgtcgcagc tatcccagcc aagttgatcc atctcttcac gagacatcgg caaaaacggt
     2221 gccggtccaa aacaggcggc ccagtactgc ggccaggaga acaggtcgcg atccggttgg
     2281 atcagggaga tagagctcat tttgcttcca gaaatgataa aaaaataatc aaaggccggg
     2341 gattataagc cgga
//
LOCUS       DADMHM010000319         2350 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.324, whole genome shotgun sequence.
ACCESSION   DADMHM010000319 DADMHM010000000
VERSION     DADMHM010000319.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2350)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2350)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2350
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.324"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(186..1136)
                     /gene="corA"
                     /locus_tag="JN125_004144"
     CDS             complement(186..1136)
                     /gene="corA"
                     /locus_tag="JN125_004144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000947142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HAY8873693.1"
                     /translation="MLSAFQLENNRLTRLEVEESQPLVNAVWIDLVEPDDDERLRVQS
                     ELGQSLATRPELEDIEASARFFEDDDGLHIHSFFFFEDAEDHAGNSTVAFTIRDGRLF
                     TLRERELPAFRLYRMRARSQSMVDGNAYELLLDLFETKIEQLADEIENIYSDLEQLSR
                     VIMEGHQGDEYDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKARLPGGQLEQARE
                     ILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASSY
                     GMNFEFMPELKWSFGYPGAIIFMILAGLAPYLYFKRKNWL"
     gene            1506..2270
                     /locus_tag="JN125_004145"
     CDS             1506..2270
                     /locus_tag="JN125_004145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphodiester glycosidase family protein"
                     /protein_id="HAY8873694.1"
                     /translation="MAHRLLIGKGMITLNLKRIFLTLTLLPLFSVAADDCALSDPTLT
                     VQAYTVNPQTERVKMYWQKANGEAWGTLHALLADINSQGQVQMAMNGGIYDESYAPLG
                     LYIENGQQKVALNLASGEGNFFIRPGGVFYVAGDKVGIIRLDAFKTSKEIQFAVQSGP
                     MLLENGVINPRIHPNVASRKIRNGVGINKQRNAVFLLSQQATNFYDFACYAKAKLNVE
                     QLLYLDGTISHMYMKGGAIPWQRYPFVTMISVERKG"
BASE COUNT          647 a          560 c          569 g          574 t
ORIGIN      
        1 aacactatca ataagttgga gtcattaccc ccttatcgta acactcatat tggtattaac
       61 gattttactg agtatcaatt aacacaagaa aataaaatag agcgagtttt caatccgcat
      121 gactttaaaa aagacaattt ttagaaataa gccggataaa aaaatagctt tatccggcac
      181 tcatattaca accagttctt ccgcttaaag tacagatacg gtgccaggcc cgcgaggatc
      241 ataaagataa tcgcgccagg gtagccgaag ctccacttca gttctggcat aaactcaaag
      301 ttcatgccat agctggaagc aacgagcgtc ggcggcagga ataccacgga taccaccgag
      361 aagattttga tgatgcggtt ctgctcgatg ttgataaaac ccatcgccgc ctgcatcagg
      421 aagttcacct tctggaacag agattcgtta tgcggcagca gggattcgat atctcgcagg
      481 atttcacgcg cctgctccag ttgtccaccc ggtaagcgtg ctttacgtac caggaagttg
      541 agcgcgcgct gggtatccat cagacacagg cgtactttcc agccgatatc ttccagttcc
      601 gccagcgtgg agagcgcctc atcgtactca tcgccctgat gcccttccat aatcacccgg
      661 ctcaactgct ccaggtcgct atagatattt tcaatttcat ctgccaactg ttcgattttg
      721 gtttcgaaca gatccagcag cagctcgtag gcgttaccgt ctaccatcga ctggctacgg
      781 gcacgcatac gatacagacg aaaagcgggc agttcacgct cacgcagagt aaacagacga
      841 ccatcacgga tggtaaatgc cacagtggag ttaccggcgt gatcttccgc atcttcaaag
      901 aagaagaagg agtgaatatg caggccgtcg tcgtcttcaa agaaacgtgc cgatgcttcg
      961 atgtcttcca gttccgggcg ggttgccagg ctctggccaa gttcagattg tacacgcagt
     1021 cgctcgtcgt cgtccggttc gacaagatca atccatactg catttacaag gggttgtgac
     1081 tcttcaactt ccagccgggt cagtcggtta ttttccagtt gaaatgcgct cagcatgacc
     1141 gggactccca atgcttaaaa tatcggacag ttcggtgggc acacagaaac aaattgggtt
     1201 tcagaccatt aaacagcctg actcagcgcg acgggaaaaa ttgaggtcgc tgacaaccgc
     1261 taaggctatc agcaaaaagg gatagcctta ggagttgatc ctggatgaca ggatagtgag
     1321 ccagtatcta ctgggtgtgt ccaaggcgaa tgtcctctta gaatgatcgt gcgcgcatgt
     1381 tacgccagca aaattttgcc gtcaacacgc aacagaacac cacagaacaa tagttgaact
     1441 tcgcgctttt tggtactcgt caaggtcgct aacaggataa aaaaatccca catccaggac
     1501 ctataatggc gcatcggcta ctcattggta aaggaatgat caccttgaat ctcaaacgga
     1561 tttttctcac cctcacctta cttcccttgt tttctgttgc cgctgatgat tgcgcactct
     1621 cagatccgac gctgaccgta caggcgtata ccgttaatcc tcaaacagag cgggtgaaaa
     1681 tgtactggca aaaagccaat ggcgaagcgt ggggaacgtt acatgctctg ctggcggata
     1741 ttaatagtca gggtcaggtg cagatggcga tgaacggcgg catctatgat gaaagctatg
     1801 cgccgctcgg tttgtacatc gaaaacggtc agcagaaggt ggcgttaaat ctcgcttcag
     1861 gtgaagggaa tttctttatc cgtcctggcg gcgtgtttta tgtcgcggga gataaagtcg
     1921 gcatcattcg tctggatgcc tttaaaacca gtaaagagat tcagtttgcg gtgcagtcag
     1981 ggccaatgtt attagaaaac ggcgtaatta atccacgcat tcacccgaat gttgcctcgc
     2041 gtaaaattcg taacggtgta gggattaata aacaaaggaa cgccgtgttt ttgttgagcc
     2101 agcaggcgac aaatttttat gattttgcct gttatgccaa agcgaaactg aacgttgagc
     2161 agttgcttta tcttgatggc acaatttcac atatgtatat gaaaggcggg gcaatcccgt
     2221 ggcaacgcta tccttttgtc accatgattt ccgtcgagcg gaaaggttaa gcattgtaca
     2281 ctcgaggagg ccagacaaac tgggactggc tacacagctg gaaaatcatc agataaatga
     2341 agggaaacaa
//
LOCUS       DADMHM010000320         2302 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.325, whole genome shotgun sequence.
ACCESSION   DADMHM010000320 DADMHM010000000
VERSION     DADMHM010000320.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2302)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2302)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2302
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.325"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(101..841)
                     /gene="cysQ"
                     /locus_tag="JN125_004146"
     CDS             complement(101..841)
                     /gene="cysQ"
                     /locus_tag="JN125_004146"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HAY8873695.1"
                     /translation="MLDQVCQLARNAGDAIMQVYDGTKPMDVVSKADNSPVTAADIAA
                     HTVIMDGLRTLTPDIPVLSEEDPPGWEVRQHWQRYWLVDPLDGTKEFIKRNGEFTVNI
                     ALIDHGKPILGVVYAPVMNVMYSAAEGKAWKEECGVRKQIQVRDARPPLVVISRSHAD
                     AELKEYLQQLGEHQTTSIGSSLKFCLVAEGQAQLYPRFGPTNIWDTAAGHAVAAAAGA
                     HVHDWQGKPLDYTPRESFLNPGFRVSIY"
     gene            1031..>2302
                     /locus_tag="JN125_004147"
     CDS             1031..>2302
                     /locus_tag="JN125_004147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709984.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2',3'-cyclic-nucleotide
                     2'-phosphodiesterase/3'-nucleotidase"
                     /protein_id="HAY8873696.1"
                     /translation="MIKFSATLLATLIAASVNAATVDLRIMETTDLHSNMMDFDYYKD
                     TATEKFGLVRTASLINDARNEVKNSVLVDNGDLIQGSPLADYMSAKGLKAGDVHPVYK
                     ALNTLDYTVGTLGNHEFNYGLDYLKNALAGAKFPYVNANVIDARTKQPMFTPYLIKDT
                     EVVDKDGKKQTLKIGYIGVVPPQIMGWDKANLSGKVTVNDITETVRKYVPEMREKGAD
                     VVVVLAHSGLSADPYKVMAENSVYYLSEIPGVNAIMFGHAHAVFPGKDFADIEEADIT
                     KGTLNGVPAVMPGMWGDHLGVVDLQLSNDSGKWQVTQAKAEARPIYDIANKKSLAAED
                     SKLVETLKADHDATRQFVSKPIGKSADNMYSYLALVQDDPTVQVVNNAQKAYVEHYIQ
                     GDPDLAKLPVLSAAAPFKVGGRKNDPASYVEV"
BASE COUNT          589 a          563 c          584 g          566 t
ORIGIN      
        1 ttttgcactt taaatacaat ctctttttat ttataacttt ttaggttggg agaaatcagg
       61 atggcagaat caggaaatac actgtttctg ccatctgaat ttagtaaata gacactctga
      121 acccaggatt caggaacgac tcgcgcggag tgtaatccag cggtttaccc tgccagtcgt
      181 gaacgtgcgc tccggcagct gcggccacag catgtccagc ggcggtgtcc caaatattcg
      241 ttggtccgaa gcgcgggtac agctgcgcct gtccttccgc caccaggcag aatttcagcg
      301 aagagccgat ggacgtggtc tgatgttcgc caagctgttg cagatactct ttcagctccg
      361 catctgcatg ggaacggctg ataaccacca gcggcgggcg cgcatcgcgg acctgaatct
      421 gcttgcgcac accgcactct tctttccagg ccttgccttc tgccgcgctg tacattacgt
      481 tcattaccgg cgcatacacc acacctaaaa tcggtttgcc atggtcaatg agcgcaatgt
      541 taacggtgaa ttcgccattg cgtttaataa actctttagt accatccagc gggtctacca
      601 gccagtaacg ctgccagtgc tgacggactt cccaaccggg aggatcttct tcagaaagga
      661 ccggaatatc cggtgtcagc gtacgtaaac cgtccatgat aacggtgtgt gcggcaatat
      721 ccgctgccgt taccggagaa ttgtccgctt tgctgacgac gtccatcggt ttcgtcccgt
      781 cgtagacctg cataatggca tcgcctgcat tccgtgcaag ctggcatact tgatctaaca
      841 tttctccacc tcgtctctgt gagcggtgtt aacttattgt tttacttata ccctatcgtt
      901 aatgaatgcg ccaactgtga tagtgtcatc attttcaaag cgtaaaattg tggcattctt
      961 cactgttcta taagtaagac gtttattctc ccttttcttt cgtattcccg atgataaaag
     1021 gatgtccctg atgattaagt ttagcgcaac gctcctggcc acgctgattg ccgccagtgt
     1081 gaatgcagcg acggtcgatc tgcgtatcat ggaaaccact gatctgcata gcaacatgat
     1141 ggatttcgat tattacaaag acaccgccac ggaaaaattc ggactggtac gtacggcaag
     1201 cctgattaac gatgcccgca atgaagtgaa aaacagcgta ctggtcgata acggcgattt
     1261 gattcagggg agtccgctgg ccgattacat gtcggcgaaa ggattaaaag caggtgatgt
     1321 tcatccggtt tataaggcgc tgaatacgct ggattatacg gtcggtacac tcggcaatca
     1381 tgaatttaac tacggtctgg attacctgaa aaatgcgctg gcgggagcga aattccctta
     1441 tgtaaatgcc aacgtcattg acgccagaac caaacagcca atgtttacac cgtatttaat
     1501 taaagatacc gaagtggtcg ataaagacgg aaaaaaacag acgctgaaga ttggctatat
     1561 tggcgtcgtg ccgccgcaaa tcatgggctg ggataaagct aatttatccg gaaaagtgac
     1621 ggtgaatgat attaccgaaa ccgtgcgcaa atacgtgcct gaaatgcgcg agaaaggtgc
     1681 cgatgtcgtt gtcgttctgg cgcattccgg gctgtctgcc gatccgtata aagtaatggc
     1741 ggaaaactca gtttattacc tcagtgaaat tccgggcgtt aacgccatta tgtttggcca
     1801 tgctcacgcc gttttcccgg gtaaagattt tgctgatatc gaagaggctg atatcaccaa
     1861 aggcacgctg aatggtgttc cggcggtaat gccgggcatg tggggcgatc atcttggggt
     1921 ggtcgactta caactcagta atgacagcgg taaatggcag gtgacgcagg cgaaagcgga
     1981 agcacggccg atttacgaca tcgccaataa aaaatccctc gcggcggaag acagcaagct
     2041 ggtagaaaca ctcaaagccg atcacgatgc cacacgccag ttcgtcagca agccaatcgg
     2101 taaatctgcc gacaatatgt atagctatct ggcgctggtg caggacgatc cgaccgtgca
     2161 agtcgtgaac aacgcgcaaa aagcgtatgt cgaacattac attcagggcg atccggatct
     2221 ggcaaaactg ccggtgcttt cagctgccgc accgtttaaa gttggtggtc gcaaaaatga
     2281 cccggcaagc tatgtggagg tg
//
LOCUS       DADMHM010000321         2275 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.326, whole genome shotgun sequence.
ACCESSION   DADMHM010000321 DADMHM010000000
VERSION     DADMHM010000321.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2275)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2275)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2275
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.326"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..349)
                     /locus_tag="JN125_004148"
     CDS             complement(<1..349)
                     /locus_tag="JN125_004148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inhibitor of g-type lysozyme"
                     /protein_id="HAY8873697.1"
                     /translation="MKIKSISKAVLLFALLTSTSFAAGKNVNVEFRKGHSSAQYSGEI
                     KGYDYDTYTFYAKKGQKVHVSISNEGADTYLFGPGIDDSVDLSRYSPELDRHGQYSLP
                     ASGKYELRVLQTRN"
     gene            591..884
                     /locus_tag="JN125_004149"
     CDS             591..884
                     /locus_tag="JN125_004149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309701.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873698.1"
                     /translation="MFCVIYRSSKRDQTYLYVEKKDDFSRVPEELMKGFGQPQLAMIL
                     PLDGRKKLVNADIEKVKLALTEQGYYLQLPPPPEDLLKQHLSVMGQKTDDTNK"
     gene            956..1615
                     /locus_tag="JN125_004150"
     CDS             956..1615
                     /locus_tag="JN125_004150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HAY8873699.1"
                     /translation="MYQHHNWQGALLDYPVSKVVCVGSNYAKHIKEMGSAVPEEPVLF
                     IKPETALCDLRQPLAIPSDFGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDL
                     TLRDVQGKMKKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLGLSVNGEQRQQG
                     TTADMIHKIVPLIAYMSKFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFDGHSLTTRV
                     L"
     gene            1692..2153
                     /locus_tag="JN125_004151"
     CDS             1692..2153
                     /locus_tag="JN125_004151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415699.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcgN family cysteine cluster protein"
                     /protein_id="HAY8873700.1"
                     /translation="MAEHLMNDVPFWQSKTLDEMSDAEWESLCDGCGQCCLHKLMDED
                     TDEIYFTNVACRQLNIKTCQCRNYERRFEFEPDCIKLTRENLPTFEWLPMTCAYRLLA
                     EGKDLPVWHPLLTGSKAAMHGERISVRHIAVKESEVIDWQDHILNKPDWAQ"
BASE COUNT          592 a          490 c          588 g          605 t
ORIGIN      
        1 cgtttcgggt ttgcagcact cgcagctcat atttgccaga agcagggagt gagtattgtc
       61 cgtgacgatc gagttctggg gaatatctgg ataaatcaac agaatcatcg attcctggcc
      121 cgaagaggta agtatcagcg ccttcattag agatactcac atgtactttc tgaccttttt
      181 tggcatagaa ggtatatgta tcgtaatcgt atccctttat ttcgccggag tactgagcgc
      241 tgctatggcc ttttctgaac tcaacattga cattcttacc cgcagcaaag ctcgtggagg
      301 ttagcagtgc aaacagtaat acagccttac tgatgctctt gattttcatt ggtagtctcc
      361 tgttcagaat gagtacgatg aactgttata atataacaat ccctaacggg agaattccag
      421 tggcttttct gcgttcggta aaatcccggc gcggcatttt ttgccggggg gattacttat
      481 aaaggggcat ggactcaaca aaccgcagaa atctacagct ggctggcttg tggcgcgggt
      541 ttcattgatg ttagcttatg ccaaaacctg gcatcttaaa gagtaaaagt atgttttgtg
      601 tgatttatcg aagcagcaag cgtgaccaga cctatttata tgtcgaaaaa aaagacgatt
      661 tttcgcgtgt tcctgaggaa ctgatgaaag gttttggtca gcctcagtta gcgatgattc
      721 tgccgttgga tgggcggaag aaactggtca atgctgatat tgaaaaggtt aaactggcat
      781 taaccgagca aggttactat ttgcagttac cgccaccacc cgaagatttg ctgaagcaac
      841 atctttccgt catggggcag aaaacagacg acacgaacaa ataaccgata tccggcggtg
      901 gcattatctt tgtcggcgcg ggttttcata tccacgataa ggtgagggga acgttatgta
      961 tcaacatcac aactggcaag gtgcgctgct ggattatccg gtgagtaaag tagtctgtgt
     1021 tggcagtaac tatgccaaac atattaaaga gatgggcagc gcagtgcccg aagagccagt
     1081 gctgtttatt aaaccagaaa cggcactgtg cgatctgcgg cagccattgg cgatcccatc
     1141 cgatttcggt tcagttcatc atgaagtcga actggcggtg ttgattggtg cgacgctgcg
     1201 tcaggcaacg gaagagcatg tccgcaaagc cattgccggt tacggcgtgg cgcttgatct
     1261 gacattgcgt gatgttcagg gaaaaatgaa gaaagccggg cagccgtggg aaaaggctaa
     1321 agcgtttgat aactcttgtc cgctttccgg gtttatcccc gcggcggaat ttaccggcga
     1381 tccacaaaat acaacgctgg gcctgagcgt aaacggcgaa caacgccagc aaggtacgac
     1441 tgcggacatg atccataaaa tcgttccgtt gatcgcttat atgagcaagt tttttaccct
     1501 caaggccggt gacgttgtgt tgacaggcac gcctgatggc gtcggcccgt tgcaaagcgg
     1561 tgatgagctg acagtcactt tcgatgggca ttctttgaca actcgcgttt tgtaatactt
     1621 tttgccgcct gaaagcggcg gcaaaacttg catcgctgtg ccagactggt tataaggtgc
     1681 gttttaacgt aatggcggaa cacctgatga acgatgtacc tttctggcaa agtaaaaccc
     1741 tggacgaaat gagcgatgcg gaatgggagt cgttgtgtga tggttgcggt cagtgttgcc
     1801 tgcataaact gatggatgaa gacaccgacg aaatctactt cactaacgtc gcctgtcgcc
     1861 agctcaatat taaaacctgt caatgtcgga actacgaacg tcgtttcgag tttgaacccg
     1921 actgcattaa attaacccgt gaaaatctgc caacattcga atggctgcca atgacctgcg
     1981 cttatcgttt gctggcggaa ggtaaagatt tacctgtgtg gcatccgcta cttactggtt
     2041 cgaaagcggc aatgcatggt gaacgtatct ctgtgcgtca tatcgcagtg aaagaatcag
     2101 aagtgattga ctggcaggat catatcttaa ataaacctga ctgggcgcag tgataaattt
     2161 aatagatgtt gatgggggct ttcttaatat acgtctggat gctcgccatt tcgtagccct
     2221 gtttttgaaa gcgctctgtc ataatgagag ttacccgata ccttattatc aacag
//
LOCUS       DADMHM010000322         2270 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.327, whole genome shotgun sequence.
ACCESSION   DADMHM010000322 DADMHM010000000
VERSION     DADMHM010000322.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2270)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2270)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2270
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.327"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            324..1976
                     /locus_tag="JN125_004152"
     CDS             324..1976
                     /locus_tag="JN125_004152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858318.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-sugar
                     hydrolase/5'-nucleotidase"
                     /protein_id="HAY8873701.1"
                     /translation="MIPLKKNITLIMFTLSLLTGNPAIAYETDKVYKITVLHTNDHHG
                     HFWRNNHGEYGLSSQKTLVDNIRQKVINNGGSVLLLSGGDINTGVPESDLQKAEPDIR
                     GMNLIGYDAMAVGNHEFDNPLNILRQQEKWATFPFLSANIYQKSTGRRLFSPWKIFIR
                     QNLKIAVIGLTTDDTAKTGNSEYFTDIEFRQPAAEARSVIDELNQQEKPDIIIAATHM
                     GHYDNGESGSNAPGDVEMARSLPTGSLAMIVGGHSQAPVCMASDNKKQWNYIPGTTCV
                     PDKQNGIWIVQAHEWGKYVGQADFEFCNGTMKLVNYQLHPVNLKMRITREDGKTEFSF
                     YTPEITEDPQMLSLLTPFQNKGKAQLDVKVGVVNGRLEGDRSKVRFVQTSMGHLILSA
                     LTERIDADFAVVSGGEIRDSIESGNITYKDILKVQPFGNTVVSIDLTGKEVADYLATV
                     AQMKPDSGAYPQFLNTSFVVKKGKIEMLKIKGKSVDLNKKYRMTTFSFNATGGDGYPR
                     IDNRPGYINTGFIDAEVLIEYIREHSPLDAASYEPKGEVSWQ"
     gene            complement(1987..2157)
                     /locus_tag="JN125_004153"
                     /pseudo
     CDS             complement(1987..2157)
                     /locus_tag="JN125_004153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001458895.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          705 a          420 c          528 g          617 t
ORIGIN      
        1 tctccaggaa acttggggcg gttcacgtca gtatcagacc atattaattg ctgaaactga
       61 taaacatcaa accttataga agggtgaatg ctgaaagggg gctatggtga tcgacgtgat
      121 gacaacgaca ggtaagaccg tgacctgata aacctgaatt gtgtcctaga cataaagtcc
      181 gtgaagggaa taaggctcag gtaagtgaat cttatagtgg cccgcagctc tgactgcaat
      241 aaggccggat acagagcagc aactactcgt cgatgtcaga acaacggaag ccttgcaaac
      301 ggggatgcgt tcatacaggt acaatgatac cgttaaaaaa aaacattacg ctaataatgt
      361 tcaccctgtc attactgaca ggaaatcctg ctatagcgta tgaaacagat aaagtatata
      421 aaataaccgt tctgcataca aatgaccacc atggacactt ttggcgtaac aatcatggtg
      481 agtacgggtt atcctcccaa aaaactctgg tggacaatat ccggcagaaa gtaataaata
      541 atggcggaag tgttctatta ttatctggtg gtgatattaa caccggtgta cctgaatcag
      601 accttcagaa ggctgaaccc gatattcgtg gaatgaatct aattggttat gatgcaatgg
      661 ccgtcggtaa tcatgaattt gataatcctc taaatatatt acgtcagcag gaaaaatggg
      721 ccacatttcc tttcctttct gctaacatat atcaaaaaag tacagggagg cgtttattca
      781 gtccatggaa aattttcatc cgtcagaatt tgaaaattgc agtcattggc ttgacgacag
      841 atgatactgc gaaaacagga aattctgaat attttactga tattgagttc cgtcaacctg
      901 ctgctgaggc gaggagtgtc attgatgaac ttaatcagca ggaaaagcca gatattatta
      961 ttgcggcaac acatatgggt cactatgaca atggcgagtc aggttcgaat gctcctggtg
     1021 atgttgaaat ggctcgcagt ttgccgactg gctcattagc aatgattgtg ggaggacatt
     1081 cacaagctcc tgtctgcatg gccagcgata ataaaaaaca gtggaattat attccgggga
     1141 caacctgtgt accagataaa caaaatggca tctggattgt acaagcgcat gagtggggaa
     1201 aatatgtcgg tcaggctgat tttgaattct gtaacggtac aatgaaactg gttaattatc
     1261 agttacaccc agttaatctc aaaatgagaa ttaccagaga agatggaaaa acggaatttt
     1321 ctttttacac ccccgaaatt actgaagatc cacagatgtt atccttactg acaccattcc
     1381 agaataaagg caaagcacaa ctggatgtga aggttggggt tgtgaacgga cgtctggaag
     1441 gggacagaag taaagttcgt tttgttcaga ccagtatggg ccatctgatt ctgagcgctc
     1501 tgacagaacg tattgacgca gattttgctg ttgtcagtgg tggggaaatt cgagattcca
     1561 tagagagtgg taacatcaca tacaaagata tactgaaagt tcagccattt ggtaatacgg
     1621 tagtaagtat tgatttgacg gggaaagaag tagctgacta cctagctaca gtggcacaga
     1681 tgaaaccgga ttccggagcc tacccacaat ttttgaatac cagctttgta gtcaaaaaag
     1741 gaaaaatcga aatgctaaaa ataaaaggta aatcggttga ccttaacaaa aaatatcgta
     1801 tgacaacatt tagctttaat gctactggtg gggatggcta tccacgtatt gataatagac
     1861 ccggatacat aaataccgga tttattgatg ctgaagtact tatcgaatat atccgggaac
     1921 attcaccgct ggatgctgct tcatatgaac caaaaggtga agtcagttgg cagtgataac
     1981 gtaattgacg atcatcacgt gttttttgct gacagtcgct gtgactttgt gaaagtagtc
     2041 tctgcggatg tttgcgatat gggaatgcag ttgctgtatt ttgtgtttct gcttctgcca
     2101 gttgttgctg aatttaacct tgcggcttaa ctgatgttgg agcgctgcca gcttcttcgt
     2161 caatttcgct gattaaagtt tattcattat ggcatgatct gcgtaagcgg ctcgtcagaa
     2221 ccgtattgat atttactaag agctcagatc aactttccag ggcaacagat
//
LOCUS       DADMHM010000323         2172 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.328, whole genome shotgun sequence.
ACCESSION   DADMHM010000323 DADMHM010000000
VERSION     DADMHM010000323.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2172)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2172)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2172
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.328"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..849)
                     /locus_tag="JN125_004154"
     CDS             complement(<1..849)
                     /locus_tag="JN125_004154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858398.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HAY8873702.1"
                     /translation="MIKSTNIQAIGSGIMHQINNIYSLTPFPLPMELTPSCNEFYLKA
                     WSEWERNGTPGEQRNIAFNRLKICLQNQEAELNLSELDLKTLPDLPPQITTLEIRKNL
                     LTHLPDLPPMLKVIHAQFNQLESLPALPETLEELNAGDNKIKELPFLPENLTHLRVHN
                     NRLHILPLLPPELKLLVVSGNRLDSIPPFPDKLEGLALANNFIEQLPELPFSMNRAVL
                     MNNNLTTLPESVLRLAQNAFVNVAGNPLSGHTMRTLQQITTGPDYSGPRIFFSMGSSA
                     TISAPEH"
     gene            complement(1239..1507)
                     /locus_tag="JN125_004155"
                     /pseudo
     CDS             complement(1239..1507)
                     /locus_tag="JN125_004155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_001449236.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1616..1839)
                     /locus_tag="JN125_004156"
                     /pseudo
     CDS             complement(1616..1839)
                     /locus_tag="JN125_004156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          624 a          367 c          460 g          721 t
ORIGIN      
        1 gtgttctgga gcggaaattg tggcagaact tcccatagag aaaaatattc gaggaccaga
       61 ataatctggt ccggtggtta tttgttgtag tgtacgcatg gtatggccag acagtggatt
      121 acctgcaaca tttacgaagg cattctgagc taatctcagg acactttccg gaagtgttgt
      181 cagattatta ttcattagca cagccctgtt catactaaaa ggtaattccg gtagttgttc
      241 tataaaatta ttagccagag ccagcccttc aagcttatct ggaaaggggg gaatgctgtc
      301 taatctgttt ccagaaacta ccagtaattt tagttccggt ggcaatagtg gcagaatatg
      361 caatcggtta ttatgaaccc gtaaatgagt tagattttca ggaagaaatg gtaattcttt
      421 tatcttgtta tcacccgcat taagctcttc taacgtctcg ggtaaggcag gtaagctttc
      481 cagttgatta aattgagcat gtattacctt aagcattggt ggtaaatcag ggagatgtgt
      541 taataggttt tttcttattt ccagtgttgt tatctgaggc ggtaaatctg gtaatgtttt
      601 taaatctaac tcagataaat ttaattctgc ctcttgattt tgtaaacata ttttcagcct
      661 attgaaggcg atattgcgtt gctcgcctgg ggtaccgttc ctttcccatt cactccaggc
      721 ttttaaataa aattcattac aagatggagt cagttccata ggtaaaggaa atggagttaa
      781 cgagtatata ttgtttattt gatgcataat accagaaccg attgcctgta tattggttga
      841 tttaatcatt ataactaaaa tttcttatca acgataagaa ttctagtgaa atagaatata
      901 gcttattaat tttaaaacag tttgctttgt accctttctc cgggtattgc tttcccccta
      961 agccgtctat gagaaggagt ctgctgttat tcctgagaat ggtaattcag ccataaaaag
     1021 gtatttaagg tcattgcgtc tctccctgta ctcgaataat ggtgaagaaa gcatgatgaa
     1081 tatatcacga taacgttcag tacgtatcga ggatagatgg agttactcct ctctgaaata
     1141 gaattactgc tctatttttt tctgttttca gaagttatta gtaacaaacc ctaatatatt
     1201 tttttgaaaa tagagcttaa acgagcctga aattaacttc agaaatcaga ataccgttgg
     1261 ctttgttttt catcaattcc ggcttcattt atctttgtca accattgtat ttctgtagct
     1321 gtgaatttca actttttcgt tcggttggta gcaggtattt gcaattcgta tatggctgtt
     1381 tttgtttatt aaaaacagta catccatctg tagtaacagt agaagatact aatatagtat
     1441 ttgatacttc agggatgata ttttcttgtt ttttgggaag acaagggaat atagtttgtg
     1501 taagcatatt acttccttat attatatttt ggtaaaaaat ttattttttt acattatagt
     1561 cggctaaatg aagtttactg taaaaaaacg atactttttc gggtggcgct tccaatcagt
     1621 agaatatgtg tttttcaatg aaggagccga tgacttttcg tggatttcca cggaacgcga
     1681 gaagcagatt gttttacgtg ccagccgctt gatgcgggtg cggagggtca ggttgttacg
     1741 ttcaagatat agcatgtgct ggatgaagat cccttttctg gtcacctgtt tatctttcgt
     1801 ggccgacggg gtgacactgt taaaatgtaa tgaacgcatc ccacacaatt aaacacggag
     1861 tagtatgatg gttaaaaggg tgaaactggc aggtgtggag cctcgcagct ttccggcatc
     1921 atactgccca atacgggatg cataaagcgt cctcagactg gagactccac aaatgaaata
     1981 tacaccggtt ggcgttgata tggcaaaaca tgtcattcag attcacttca tcaatgagca
     2041 catgtcagcg ccagtgatat aagacggtaa tggggatgcg gacgatttcc tggactctca
     2101 gaagatgaaa catgtttact gaagaacaaa aaatttgcgc tattgagctt tatttcaaat
     2161 atggtaagaa gc
//
LOCUS       DADMHM010000324         2137 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.329, whole genome shotgun sequence.
ACCESSION   DADMHM010000324 DADMHM010000000
VERSION     DADMHM010000324.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2137)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2137)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2137
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.329"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(148..417)
                     /locus_tag="JN125_004157"
     CDS             complement(148..417)
                     /locus_tag="JN125_004157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HAY8873703.1"
                     /translation="MLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQEFSEHIAPLQD
                     AVDLEIATEEENSLLEAWKKYRVLLNRVDTSTAPDIEWPEEPDTM"
     gene            474..1142
                     /locus_tag="JN125_004158"
     CDS             474..1142
                     /locus_tag="JN125_004158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HAY8873704.1"
                     /translation="MVKLMKKNTDDGAKIYTPLTLKLYDWWVLGVSNRLAWGCPTKEH
                     LLPHFLEHLGNNHLDIGVGTGFYLTHVPESSLISLMDLNEASLNAASKRAGESKIKHK
                     ISHDVFEPYPAALHGQFDSISMFYLLHCLPGNISTKSCVIRNAAQALTDDGTLYGATI
                     LGDGVVHNSFGQKLMRIYNQKGIFSNTKDSEEGLTHILSEHFENVKTKVQGTVVMFSA
                     SGKK"
     gene            1458..>2137
                     /locus_tag="JN125_004159"
     CDS             1458..>2137
                     /locus_tag="JN125_004159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005105549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HAY8873705.1"
                     /translation="MLPVNNPPLSTGNVSFYRTTSIDNVHNNYLSEWVEWTKNSISGE
                     NRETAFTRLQLCLENSETSLDLSCLGLRSLPRLPDNLDEINVSNNQLSMLPELPRALK
                     ELNASSNQLSALPELPVSLEYINVSDNHLFALPELPASLEYINVSDNHLSVLPRLPMS
                     LELLDAARNALEVIPDFPERDDHIIRIFWLNQNRITAIPESILGLSSDSVVNLRENQL
                     SPRIMQTL"
BASE COUNT          641 a          463 c          398 g          635 t
ORIGIN      
        1 ccgttttgcc tgtgtgttga ataattccac tgcagttata taaaatcggt aacggctgga
       61 aatcattcaa tactcgcact atcgaaagtt caccagccaa ccgcagcacg tcctgcatac
      121 gtcgtgtctg cggtttttct ttttcgctta cattgtgtct ggttcttccg gccactcaat
      181 atcaggtgca gttgatgtat caacacggtt cagcaacacc cgatacttct tccaggcttc
      241 cagcaacgag ttttcttcct ccgttgcgat ctccagatct acagcatcct gaagtggcgc
      301 aatatgctca ctgaattcct ggatgtagaa ctgtgtggtg acggtcttcc agccattcgg
      361 ctcctgctgt atcgaagcat accaggctat ttcaatatcg ctatgctgcg gcagcattta
      421 accccttgta attcatcgcc ataattgatt taattcacaa ataaaactat aatatggtga
      481 aattaatgaa aaaaaacaca gatgatgggg ctaaaattta cacaccactt accctaaagc
      541 tttatgactg gtgggttttg ggagtatcaa atcggcttgc atggggatgt cctacaaagg
      601 aacaccttct tccacacttt ctggaacatt taggtaacaa ccatctggat attggtgttg
      661 gaactgggtt ttaccttact catgtacctg agagtagtct gatatcttta atggatttga
      721 acgaagctag cctgaacgcg gcatctaaaa gggctgggga atcaaaaatt aaacataaaa
      781 ttagccatga tgtttttgaa ccttatcccg cggcgttaca tggtcaattt gattccattt
      841 ccatgtttta ccttcttcac tgcctgcctg gaaatatatc tacaaaaagc tgtgtaatac
      901 gcaatgcggc gcaggcctta actgacgatg gaactctata cggagccaca attcttggcg
      961 atggagttgt gcacaatagc ttcggtcaaa aactgatgcg catttacaat cagaaaggca
     1021 tcttttcaaa cacaaaagat tccgaagaag gcttaacaca tattctctca gagcatttcg
     1081 agaatgttaa aaccaaggtt caaggtactg tagtaatgtt ttccgcttca gggaaaaaat
     1141 agcatccaac cgcagcacgt tcttgcttaa gacgtgctac ggtttccttt acgatttggg
     1201 gttgcgactt tacctctatt gataatgcat tccggcagaa cgttcaaata tgaacgtacg
     1261 atatttaact aaccgaaaaa caaaatatag cacaggcgag acatttacca tctaagaaaa
     1321 tagtatcgtt tttttacagt taaatcaaca tcacttcctt aaaatgaaaa caataaattt
     1381 caatcctgaa atattttatt ttagcttatt atttcccagt atcacatttt atcaggatat
     1441 ccttctgcga ggttattatg cttcctgtaa ataatccccc cctatccact ggaaacgtct
     1501 ctttttacag aactacatca atcgacaatg ttcacaataa ttatctctcc gaatgggttg
     1561 aatggactaa aaacagcatt tccggagaaa acagggaaac tgcttttacc cggctccaat
     1621 tatgtctgga gaacagtgaa acatcgttgg acttatcttg tttaggtctc agatctctac
     1681 cacgattgcc tgacaatctt gatgaaatta atgtaagcaa taaccaacta tcaatgctcc
     1741 ccgagctacc aagggcattg aaagagctga atgcaagcag taatcaatta tctgcacttc
     1801 ctgaattacc agtgtcgctg gaatatataa atgtgagtga taaccatttg ttcgcacttc
     1861 ctgaattacc tgcgtcacta gaatatatta atgtaagtga caatcacctg tctgtacttc
     1921 cgaggttacc aatgtcattg gaattacttg atgcagccag aaatgctttg gaagtaatac
     1981 cagattttcc agaaagagat gatcatatta taagaatatt ctggcttaat cagaaccgga
     2041 tcacggcaat tccggaaagc atacttggcc tcagttctga tagcgttgtc aatcttagag
     2101 aaaatcaact atctcccaga ataatgcaaa ctttgtt
//
LOCUS       DADMHM010000325         2106 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.330, whole genome shotgun sequence.
ACCESSION   DADMHM010000325 DADMHM010000000
VERSION     DADMHM010000325.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2106)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2106)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2106
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.330"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            1..897
                     /locus_tag="JN125_004160"
     CDS             1..897
                     /locus_tag="JN125_004160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417396.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY8873706.1"
                     /translation="MDIFISKKMRNFILLAQTNNIARAAEKIHMTASPFGKSIAALEE
                     QIGYTLFTRKDNNISLNKAGQELYQKLFPVYQRLSAIDNEIHNSGRRSREIVIGIDNT
                     YPTIIFDQLISLGDKYEGVTAQPVEFSENGVIDNLFDRQLDFIISPQHVSARVQELEN
                     LTISELPPLRLGFLVSRRYEERQEQELLQELPWLQMRFQNRANFEAMIDANMRPCGIN
                     PTIIYRPYSFMAKISAVERGHFLTVIPHFAWRLVNPATLKYFDAPHRPMYMQEYLYSI
                     RNHRYTATMLQHIAEDRDGTNH"
     gene            complement(894..>2106)
                     /gene="scpC"
                     /locus_tag="JN125_004161"
     CDS             complement(894..>2106)
                     /gene="scpC"
                     /locus_tag="JN125_004161"
                     /EC_number="2.8.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="propionyl-CoA:succinate CoA transferase"
                     /protein_id="HAY8873707.1"
                     /translation="GLRKKINQGAVSFVDLHLSEVAQMVNYGFFGDIDVAVIEASALA
                     PDGRVWLTSGIGNAPTWLLRAKKVIIELNHYHDPRVAELADIVIPGAPPRRNSVSIFH
                     AMDRVGTRYVQIDPKKIVAVVETNLPDAGNMLDKQNPMCQQIADNVVTFLLQEMAHGR
                     IPPEFLPLQSGVGNINNAVMARLGENPEIPPFMMYSEVLQESVVHLLETDKISGASAS
                     SLTISADSLRKIYDNMDYFASRIVLRPQEISNNPEIIRRLGVIALNVGLEFDIYGHAN
                     STHVAGVDLMNGIGGSGDFERNAYLSIFMAPSIAKEGKISTVVPMCSHVDHSEHSVKV
                     IITEQGIADLRGLSPLQRARTIIDNCAHPMYRDYLHRYLENAPGGHIHHDLSHVFDLH
                     RNLIATGSMLG"
BASE COUNT          543 a          525 c          506 g          532 t
ORIGIN      
        1 atggacattt ttatttcgaa aaagatgcgc aatttcattt tattagcgca aaccaataat
       61 attgcccggg cggcagaaaa aatccatatg acggcttcgc catttggtaa aagcattgcc
      121 gcgctggaag aacaaattgg ctatacgcta tttacccgca aagataataa tatcagcctc
      181 aataaagccg gtcaggaact gtatcaaaaa ctgttcccgg tttatcaacg actttctgcg
      241 attgataatg aaatccataa ctcagggcgt cgttcacgag aaattgtgat tggcatagat
      301 aatacttatc cgacaattat tttcgatcag ttgattagtc tcggagataa gtatgaaggc
      361 gtgaccgccc agccagttga gttcagcgaa aacggcgtta tcgataatct ttttgaccgt
      421 cagttagatt ttattatctc cccacagcat gtatctgcac gagttcagga actggaaaac
      481 ctgactatca gtgaattacc accgctgcga ttgggctttc tcgtttctcg ccgttatgaa
      541 gagcgtcaag agcaagagct gcttcaggag ctgccctggc tacaaatgcg ctttcaaaac
      601 cgggctaact tcgaagcaat gattgatgcg aatatgcgac cttgtgggat caatcccacc
      661 attatttatc gtccctacag ttttatggcc aaaatcagcg ccgtggagcg cggacatttt
      721 ctgacggtga tcccgcattt tgcctggcga ctggtgaatc cggcaacgct gaaatatttt
      781 gatgcgccgc acaggccgat gtatatgcag gaatatcttt attcaatcag aaatcatcgt
      841 tataccgcca cgatgcttca gcatattgct gaagatcgtg acgggacaaa ccattaaccc
      901 agcatcgagc cggttgcaat taaattacgg tgtaagtcga agacgtggct aagatcgtgg
      961 tgaatatgtc cgccgggcgc attttccaga tagcgatgca gataatcccg atacatagga
     1021 tgtgcacaat tatcaatgat agtgcgggcg cgttgaagcg gggaaagacc gcgcagatcg
     1081 gcgatccctt gttcggtgat gatcactttg acgctgtgtt cgctgtgatc aacatggctg
     1141 cacattggca cgacggttga gatcttgcct tctttagcaa tcgacggagc cataaagatc
     1201 gacagatacg cgttgcgttc aaaatcaccg ctgccgccga tgccgttcat cagatcgacc
     1261 ccggctacgt gcgttgaatt tgcatgcccg taaatatcaa actctaggcc gacgttcaga
     1321 gcgatgacgc ccagacgacg gatgatttcc gggttattgg aaatctcctg cggacgcaac
     1381 acaatgcggc tggcaaagta atccatattg tcgtaaatct tgcgcaggga atcggccgag
     1441 attgtcaggc tggaggcgct ggccccgctg attttgtcgg tttccagtaa atgcaccacc
     1501 gattcctgta gcacttccga atacatcatg aacggaggaa tttccgggtt ttcccccaga
     1561 cgcgccatta ccgcattatt gatattgccc acgccacttt gcagcggcag aaattccggc
     1621 ggaatacgcc catgcgccat ttcctgcaat aagaacgtga ccacgttatc ggcaatctgc
     1681 tggcacatgg gattttgctt atccagcata ttaccggcgt cgggcaagtt ggtttctacg
     1741 acggcgacaa tctttttcgg atcgatttgc acatagcggg taccgacgcg atccattgca
     1801 tggaagatcg acacgctatt gcgccgcggt ggcgcgccag gaatcacaat atctgccagt
     1861 tctgcaacgc gcggatcgtg atagtgatta agttcaatga tcactttctt cgctcgcagc
     1921 agccaggtcg gcgcattacc gatcccgctg gttaaccaga ctcgaccatc cggtgccagt
     1981 gccgatgctt caatgacggc aacatcaatg tcgccgaaga aaccgtaatt gaccatttgc
     2041 gccacttcgc tcaaatgcag gtcaacgaaa ctcaccgcgc cctgattgat ctttttacgt
     2101 aaaccg
//
LOCUS       DADMHM010000326         2102 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.331, whole genome shotgun sequence.
ACCESSION   DADMHM010000326 DADMHM010000000
VERSION     DADMHM010000326.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2102)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2102)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2102
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.331"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..458)
                     /locus_tag="JN125_004162"
     CDS             complement(<1..458)
                     /locus_tag="JN125_004162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873708.1"
                     /translation="MRVLLRPVLVPELGLVVLKPGRESMPVFHNTRVLVEPEPKSMRN
                     LPSGVVPAVRQPLVEDKTLLPFFSNARVIRAAGGAGALSDWLLRHIKSCQWPHGDYNH
                     SETVIHRYGTGAMVLCWHCDNQLRDQTSESLEQLAHQNLSAWMIDVIGHA"
     gene            complement(460..738)
                     /locus_tag="JN125_004163"
     CDS             complement(460..738)
                     /locus_tag="JN125_004163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873709.1"
                     /translation="MAHDTKFYNSDNSAAPASRHGRRSHAFKSDWYQHDPCTEEQAEW
                     LIQRYRRHGYEIKKALSLDYRHWIIFVRLPYSERPPRPSCTFQQRIWR"
     gene            679..864
                     /locus_tag="JN125_004164"
     CDS             679..864
                     /locus_tag="JN125_004164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001112740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873710.1"
                     /translation="MPAGRGGRVIRIVKFGIVRHLFSLLAQQVPVVQADGWIVNQNDQ
                     KKQNPPKRVKCGCVEDA"
     gene            complement(906..1118)
                     /locus_tag="JN125_004165"
     CDS             complement(906..1118)
                     /locus_tag="JN125_004165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system Hok family toxin"
                     /protein_id="HAY8873711.1"
                     /translation="MLNTCRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIVTALVT
                     RKDLCEVRIRTGQTEVAVFTAYEPEE"
     gene            complement(1321..1539)
                     /locus_tag="JN125_004166"
     CDS             complement(1321..1539)
                     /locus_tag="JN125_004166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873712.1"
                     /translation="MFKCYCTLIVGGIMKNALQFLFVAFWLFASCMPIIFTARYMEKI
                     DVLILMFGHINALFLGVFMAVMCIEYWR"
     gene            complement(1713..2047)
                     /locus_tag="JN125_004167"
                     /pseudo
     CDS             complement(1713..2047)
                     /locus_tag="JN125_004167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707879.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          518 a          539 c          484 g          561 t
ORIGIN      
        1 attgcgtgac cgatgacgtc aatcatccat gctgacaggt tttgatgagc aagttgctcg
       61 agtgattcgg atgtctggtc acgcaactgg ttgtcgcagt gccagcacaa caccattgcg
      121 ccggtaccat aacggtgaat gacggtttcg ctgtgattat aatcgccgtg tggccactgg
      181 caggatttaa tatggcgcaa cagccagtca gacaatgcac cagcaccacc agcagcacga
      241 atcacccgtg cgttactgaa aaacggcagc aatgttttgt cttccactag cggctggcga
      301 acggcaggaa cgaccccgga cggcagatta cgcatgcttt tcggttccgg ctccaccagt
      361 acccgggtat tgtggaatac cggcatggat tcacggcctg gcttaaggac caccagcccg
      421 agttccggaa ccagaacagg tcgaagtaat acccgcacat tacctccaga tccgttgctg
      481 gaatgtgcag gacggacgcg gtggccgttc ggaataaggg agcctgacga agattatcca
      541 gtgacgataa tcgagactga gggctttctt aatctcgtat ccgtgtctgc ggtagcgctg
      601 aatcagccat tcagcctgtt cttcggtgca ggggtcgtgc tgataccagt cagatttgaa
      661 tgcatgagaa cgccgcccgt gcctgctggc aggggcggca gagttatccg aattgtaaaa
      721 tttggtatcg tgcgccatct gttttctctg ctggcgcagc aggtgccagt tgttcaggct
      781 gacggatgga ttgtaaacca gaacgaccag aaaaaacaaa acccgccgaa gcgggttaag
      841 tgcgggtgcg ttgaggatgc ctgacacatc agcggtggcg agggatttct cccccgccgg
      901 gtctcttact cctcaggttc gtaagctgtg aagacagcga cctccgtctg gccggttcgg
      961 attcgtacct cgcagaggtc tttcctcgtt accagtgccg tcactatgac ggttaaacag
     1021 atgacgataa gggcgattaa catcgccttt tgctgcttca tagcctgctt ctccttgcct
     1081 ttcggcacgt aagaggctaa cctacatgtg ttcagcatgg attgagcctc agattaatgt
     1141 taagcgtctt gcaggacgcg taatgttaac tggggctttt ctctatctgc cttttggtgt
     1201 tcatgcctga gacagatagc ctcaagcacc cgcagtcatt ctacttaact aagatttccc
     1261 tgcaaaccgt ttttgtccgg cacagtaaat atccaactaa accaatagcg ttcgctgtat
     1321 ttaccgccag tattcaatgc acatgaccgc catgaacacc cctaaaaaaa gggcatttat
     1381 atgtccaaac attaatatca aaacatcaat tttttccata taccttgctg tgaagatgat
     1441 gggcatacat gatgcgaaca accagaacgc aacaaacaaa aactgcaatg cgtttttcat
     1501 tattccccct acaatcaatg tgcaataaca tttaaacaca cctcaatttg gccggacata
     1561 taaatatcta aaccagaaaa aatcacttac atagcgttac aaactcttta gtctaaatac
     1621 tcatcgtaaa acattcccca tacttatcag tccgttccgc gccaggtagc ttattgcctt
     1681 atctggcaac ctataatcag gtttccgctt tttcagttgg ctggtcgttt aaccgacata
     1741 gttaacccat taatctggtt gccggatgct ggtggatttt cgcgttttag ttgttcataa
     1801 aagtgcacag ctttaaccag ttcttttgat gtaaccggga ctggtggggc agtgaataag
     1861 gcctgaattt catagttcgg cctgtcgtta caatcctctt ttttcggtac atatttccag
     1921 tcaccaaccc acaactcccc ctgagagtcc ataacacctt ttttcacgta gcgatatcgc
     1981 cacgctatcg gctctgcttc cagcgatgcc gtgcaatttt gaataactcg ccctctactc
     2041 gcgccatccc tgaattgggg tggcatttcg taatcgctat ttttaatttg gcttcttcga
     2101 tt
//
LOCUS       DADMHM010000327         2094 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.332, whole genome shotgun sequence.
ACCESSION   DADMHM010000327 DADMHM010000000
VERSION     DADMHM010000327.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2094)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2094)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2094
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.332"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            1..800
                     /locus_tag="JN125_004168"
                     /pseudo
     CDS             1..800
                     /locus_tag="JN125_004168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001608690.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            1239..2076
                     /locus_tag="JN125_004169"
                     /pseudo
     CDS             1239..2076
                     /locus_tag="JN125_004169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000244358.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
BASE COUNT          517 a          506 c          633 g          438 t
ORIGIN      
        1 ttctgggcct tgcccgtagc agttattttt atcaccgggc tgcactgaaa gccggtgata
       61 aatacgccac gatacgtaag atgctgacag atatctttaa cagtaattac cagtgttatg
      121 gctatcgtcg cctgcatgcg atgctcaggc atgagggggg gcggctatca gaaaaggttg
      181 tacgcagact tatggtggag gaacagcttg tcgtcagtcg taaccgtcgt cgttgctaca
      241 gctcatattg cggagaaatc ggaccggctc cggataacct tatcgccaga gattttaagg
      301 cggagcaacc taatcagaaa tagctgacag atatcacgga gttccagctc cctgcaggta
      361 aagtctggct gtcaccagtg gtggactgct tcgatggaaa agttgtgagc tggtctctca
      421 gtacacgccc tgatgctgaa ctggtcaaca ctatgctgga tagcgctgtc gaaacgttaa
      481 atgctggcga acgaccggtg atacacagtg acagaggtgg gcattatcgc tggccaggct
      541 ggctggaaag agtgaatgca gcaggtctta ttcgctcaat gtcccgtaaa ggatgttcac
      601 ctgataatgc tgcatgcgaa ggctttttcg gcagactgaa aacggaaatg tattatgggc
      661 gtaaatggtc gggcatcacg ccagaaaagt tcatgcagca agtggatgct tacatcagat
      721 ggtataacga gcggcgtata aaattatcgc tgggtgccgt cagccccaaa atgtaccgcc
      781 aacaatgcgg gctggaatga taaagcagtc caggaaatcg tccgcatccc cccttcacca
      841 tttggattgt ccgctccacc caacatgttg tttccttaag gttcctacac cacaaaggaa
      901 actctcatgc tgcgcagtgg atggctgacg ttgccgacag gcgggaactt cgccagttca
      961 ggcagacacc ggaacagcgc ttcacgcagg aacaggagca tctgcagccg ctgctgggta
     1021 cggacttcga tatccgtcat gtctcctggg atggctatat cgaggttggc gggaaccgtt
     1081 acagtgtgcc ggaaagcctg tgtggtcagc tggtatcaat acggatctcg ctggatgatg
     1141 aactgcggat ctacagtaat gagcaacagg tagcatcgca ccgtctctgt tcggctgcat
     1201 acggctggca gaccgtgccg gagcgtcacg ctccactctg gcagcaggct tcggagcgca
     1261 tggccgaacg gctgggggag atacagaaac gggtaatcac tgtctgtgac cgggaagcgg
     1321 atatctggca ttacctgtat tataaagtca gccacggaca gcgtggtgcg tgctgcacag
     1381 aatcgccggc tggaagaggc acccggcaag ctcttcgaac tgccggaagt cctggcaacc
     1441 gcaggaagcc acacgctgaa tgtgatgcaa aaaggcgggc gggcagcccg tcaggcccgg
     1501 atgttcatca gttacagcga agtcagcata aaaaatcccg acaacagcgg ccaggcgctc
     1561 ccgctcacgt atgtctgttg ccgggagcag gcagaggacg gtgcctgctg gcatctgctg
     1621 acgtcaggaa aagcggcgag tgccgccgat gcacgacgta ttgtcagcca ttacgagcga
     1681 cgctggctga cagaggaata ccacaaggcg tggaaaagtg gtggtacatg gaatcgctgc
     1741 gaatgcagac ccgggataac cttgagcgca tggtggttat ccaggcgttt atagcggtac
     1801 gggtgctggg cctgcggcag ggaggtgtca gtgaagaaac acaaaatgac agctgtgaga
     1861 aaatactgac gccgacagag tggaaactac agtgggttaa gctggaagga aagccgcttc
     1921 cggtgcaggc accgaccctg aaatgggcct ggggcgatgg catgacagca aacgcacagg
     1981 tcgtcccggt tggggcgtca tgtgggatgg ctggtcagac ttcaggatat ggttgagggt
     2041 tacctggtga tgaagtctct tgatcaggag ctctgatcaa gagacagcag cttt
//
LOCUS       DADMHM010000328         2083 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.333, whole genome shotgun sequence.
ACCESSION   DADMHM010000328 DADMHM010000000
VERSION     DADMHM010000328.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2083)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2083)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2083
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.333"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            1..209
                     /locus_tag="JN125_004170"
                     /pseudo
     CDS             1..209
                     /locus_tag="JN125_004170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013747467.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="IS91 family transposase"
     gene            396..560
                     /locus_tag="JN125_004171"
                     /pseudo
     CDS             396..560
                     /locus_tag="JN125_004171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001436458.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            1054..1632
                     /locus_tag="JN125_004172"
     CDS             1054..1632
                     /locus_tag="JN125_004172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873713.1"
                     /translation="MKVSFKSLGYIFHDIYNKKHTIDEFNDVVRKAVLSGKINELNAC
                     HKVAIFLAEKDNEITKKDKAKIIDTLTENYSIEFQQLMNISERTLNSSLYITPGESGF
                     VSFVNREGKICHTAYVKSSDNSMAYYHANYSSIDKYITDMCGLICMRHIESTCIIFYM
                     LDEKVLSAIAEFMNEKGWRAAFCSAKNLYKCV"
     gene            complement(1741..1999)
                     /locus_tag="JN125_004173"
                     /pseudo
     CDS             complement(1741..1999)
                     /locus_tag="JN125_004173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611146.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
     gene            1983..2083
                     /locus_tag="JN125_004174"
                     /pseudo
     CDS             1983..2083
                     /locus_tag="JN125_004174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000343765.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          664 a          357 c          511 g          551 t
ORIGIN      
        1 atgtggtgta cgccataacg gagacagtga gaaaaacggc gaggcaaatc acaaggagag
       61 ggatgtatca gcagtgactg aaggttgacc cgctgaagtg cgagctgtgc ggaggtcaga
      121 tgcggtttac ggggctgaag aggggttacc gtctggcaga gcaggttatg atgcatgagc
      181 cgctggctcg aatacggtgg tgcggctgag agtcgcagag gggaagttgc gtccatgttg
      241 aggggaacgg agcaaaaaac catcagagat acattgaatc aatcaatgta agcaatatta
      301 agtgtctata ccgattactt gatgatcagg ttgtgttgaa taaacgcgca ttcttcggtg
      361 cttttttaat cttttgggga tttaaattcc tatcgatgaa ctgtcgatat gaaaaagcga
      421 gcatcatact gacgtcaaac aaaggggtcg cagactgggg agaaatgttc ggagatcacg
      481 tgctggcaac agcgatccta gatcggctgc tacacgctga atatcaaagg agagagttac
      541 cggttaaaag agaaacgtaa agctggagtg ctgaccaaaa acacaacgcc aatcagtgat
      601 gatgaaatgg tgaaaaacgg acagcatcag taacgaaagt atcttagcag gcatgaaaat
      661 cgtccgcatc ccctaaacgg tcaaaatgct tctgccgtga aggagggaga atgccatctc
      721 atcacttata tctggcgaat gaaacacaga tggtcggcct tgcccccaaa cacacggcgg
      781 tgcaaaatgg aatggcagaa aacttcgtca aaacgatgaa atatgattaa atcagtgtta
      841 tgttcgaacc tgacgtgtta acagcagtaa agtagtctcg cgaaggtgtt caaacattat
      901 aatgaatggc atcctcatag tgcgcagggt tatagcttgc tgcggaaata tctgaagcga
      961 cgtaccagta atggggaaaa tgatagctgg tttctgaaaa tatagaggaa aatgtgatat
     1021 atatatcctg ttaatattta aggagaatat aaaatgaaag tctcgtttaa gtctttaggc
     1081 tatatttttc atgatatata taataaaaaa cacactatcg atgagttcaa cgatgtggta
     1141 agaaaagcag ttttatcagg taaaattaac gagctgaatg catgtcataa agtggcaatt
     1201 tttcttgccg aaaaagacaa tgagataaca aagaaagaca aagccaagat aatagataca
     1261 ttaactgaaa actattccat tgaatttcaa caattaatga atattagtga gcgcacgtta
     1321 aattcatctt tatatattac tcctggtgaa agtggttttg tcagttttgt taatcgtgaa
     1381 ggaaaaatat gtcatactgc atatgtaaaa tcatcagata atagcatggc atattaccat
     1441 gcaaattata gcagcattga caaatatatt acggatatgt gcggccttat ttgtatgagg
     1501 catattgagt ctacttgcat tattttttat atgcttgatg aaaaagtttt atctgccatt
     1561 gctgaattta tgaatgaaaa aggatggcgg gctgcgtttt gttcagcaaa gaacttatat
     1621 aaatgtgttt aattttagaa aaactatttg gtaaaatcca acaagagtcg agaggttcgc
     1681 gttgcttcag cagggcctca gcctgttcaa ccagactcag ttgcaggtcg tgacgcagat
     1741 ttagtggtgg tggttgattg tcagatacca gccgatgatc ttgtagtgca tatcatcaga
     1801 ctttgagaag catatggttt tgcgggtaag ccgcttaaga tgtgtccgca ggttcagatt
     1861 atgtcgctct atccgctgag tgcatttctt gcttataaca tgactggttg aggacaataa
     1921 agttcggtat accggctcag gcatcggtca tgtagaaggc aatgctaaac tggctcagca
     1981 aactaagagc agcgcgcatc cacttaccca atgcggttga gaaaatagcc ttcgatcgct
     2041 ttcatgtggc gaaacaaccg ggtgaggtgg tggataaaac ccg
//
LOCUS       DADMHM010000329         2059 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.334, whole genome shotgun sequence.
ACCESSION   DADMHM010000329 DADMHM010000000
VERSION     DADMHM010000329.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2059)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2059)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2059
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.334"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            158..415
                     /locus_tag="JN125_004175"
     CDS             158..415
                     /locus_tag="JN125_004175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001599512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlpA family phage regulatory protein"
                     /protein_id="HAY8873714.1"
                     /translation="MAIYSLVDENDLRTMKDIDRFIREKECIALTTLANSTRWKMEQA
                     GKFPRRIKIGERAAGYRLSEVQAWIRGEWHPGWKPGKTKQQ"
     gene            472..1050
                     /locus_tag="JN125_004176"
     CDS             472..1050
                     /locus_tag="JN125_004176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001038675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antirepressor protein"
                     /protein_id="HAY8873715.1"
                     /translation="MNKNIAVTGKGYARPVKKFCDIRDLVVLRFDSVNVRVVYLNGDP
                     WFVAKDVCAALELTNSRTALQMLDDDEKGVNLTYTPGGNQNMRIISESGFYKLIARSR
                     KATTPGTFAHRFSNWVFRNVIPGIRKTGTYGIPWGALQDFSRRKEQYQISASEKGREL
                     QACKRKKREQEEEEKTLIREYQPEFYFGNRIQ"
     gene            1082..>2059
                     /locus_tag="JN125_004177"
     CDS             1082..>2059
                     /locus_tag="JN125_004177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001323528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host cell division inhibitor Icd-like protein"
                     /protein_id="HAY8873716.1"
                     /translation="MGTRENKSITNNATFAAGGQCDQSDLVRSKVCNESFFLCSLRNF
                     SRANEQGANLSDSCSCAIFLRRLLRVGDGVLVDSVSLMVLSCKAMRLRSSNYGADIGY
                     SCSLTLRRWSSSRATVTSCPISSAALMPICSTLARASSDDTRGFSPLPSAWRRAISPR
                     MAVTINPALLSPSSLTDSIPCITSSGTLTVVSCDFAFLLAVAISETPNHRCVSVYTKK
                     EIQKALTCVSCAHNMKHTERIVEIQRATPRSAGNTYGASNQQRKLGAVMVAVNHIPHL
                     VHTQTAFVWRFLALSAGESQIIHVTAWTEREARSRCPSGCVAVFAAKIRQ"
BASE COUNT          564 a          436 c          522 g          537 t
ORIGIN      
        1 cttttaggtc ataaagtgaa aggggttgct ggtgtttaca ataaaagcag gcatataaag
       61 aaaaaacttg aggtgcttaa tatgtgggtt aattacctta atacgatagc aggatttaac
      121 aacaacgtta tcgagcttaa taaagaggtg gtgtgatatg gcaatttatt ctcttgttga
      181 tgaaaacgat ttgcgcacaa tgaaggacat tgatcggttc attcgtgaaa aagagtgcat
      241 agcacttacc acgctggcaa actcaacacg ctggaaaatg gagcaggcag gtaaattccc
      301 gcgacgtatc aagatcggtg aacgtgctgc agggtatcga ctttcagagg ttcaggcatg
      361 gatccgtggt gagtggcatc ctggatggaa acctggaaaa acaaaacagc aataaccagt
      421 aaataatgcc cctcatcacg aggggttttt tgtctataag gtaaaaacgc gatgaataaa
      481 aatattgccg tgacgggcaa ggggtacgct cgtccagtga aaaaattctg cgatattcgt
      541 gatctcgtcg ttctgcgctt tgatagtgtg aacgttcgtg tggtgtatct gaacggcgat
      601 ccgtggtttg ttgcaaaaga tgtttgtgct gcgctggaac taaccaattc gcgtacggcg
      661 ttgcagatgc ttgatgatga tgaaaaggga gtaaatttaa cttacacccc aggaggaaat
      721 cagaatatga gaattatctc tgagtcaggt ttctacaaac taatagcccg cagccgcaaa
      781 gcaacgacgc ctggcacatt tgctcatcgt ttcagtaact gggtattcag aaatgtgata
      841 ccaggtatca gaaaaacggg gacttatggt atcccgtggg gtgcattaca ggatttttcc
      901 cgccgtaaag agcaatatca aataagtgcc agcgagaagg ggagggagct acaggcatgt
      961 aagcgcaaaa agcgtgagca ggaggaagaa gaaaaaacgc tgatacgtga atatcagcct
     1021 gagttttact ttggtaaccg cattcagtga caaaacaaag gcgaccgcaa aagggtcgcc
     1081 agtgggaaca agggaaaaca aaagcatcac caacaatgcc acatttgcgg ctggtgggca
     1141 atgtgatcag tcagatttgg ttcgttccaa ggtttgcaac gagagctttt tcctgtgctc
     1201 tttaaggaat ttctcaagag caaacgaaca aggtgcgaat ctttctgatt catgttcatg
     1261 cgctatattt ttgcgtcgtc tcttacgagt tggtgatggt gttttggttg attctgtgtc
     1321 gctcatggtg ctgtcctgta aagcaatgcg cctgcgttcc tcaaactatg gcgctgatat
     1381 tggctattca tgctctttga ccttgcgtcg ctggagttct tcacgcgcga cggtgacgag
     1441 ttgcccgatc tcctcggctg ctttgatgcc gatttgttcg accttagcca gggcatccag
     1501 tgacgacaca aggggatttt ctccgctgcc ttctgcttgg cggcgggcca tttctccgcg
     1561 catggcggtt acgataaatc cggcattgct ttcaccgtcc agcttaacgg attccatccc
     1621 ttgcataaca tctagtggga ctctgacagt tgtcagttgt gattttgcgt ttttgttagc
     1681 cgttgccatt tctgaaactc ctaatcatcg gtgtgtttca gtatacacaa aaaaagaaat
     1741 acaaaaagcc ttgacgtgtg tttcatgcgc tcataacatg aaacacaccg aaaggattgt
     1801 tgaaatacaa agagcaacgc cccgcagtgc tgggaacaca tacggggcgt ctaaccaaca
     1861 acgtaaacta ggagccgtta tggttgctgt aaatcatata ccacaccttg tacacacaca
     1921 aacggccttt gtgtggcgtt ttctggcact gagtgccgga gaatctcaaa tcatccacgt
     1981 aaccgcctgg acggaacgcg aagcgcgtag ccgttgcccg tccggttgtg ttgctgtatt
     2041 cgctgcaaaa atccgccag
//
LOCUS       DADMHM010000330         2056 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.335, whole genome shotgun sequence.
ACCESSION   DADMHM010000330 DADMHM010000000
VERSION     DADMHM010000330.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2056)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2056)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2056
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.335"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..379
                     /locus_tag="JN125_004178"
     CDS             <1..379
                     /locus_tag="JN125_004178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HAY8873717.1"
                     /translation="ICSNKHPRITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDEKF
                     MNRKISFRDSSLLTIINSIAVTDLLGIVPYELYNSHRDFLNLKEIKLEHPLPSIKLYI
                     SYNKSSLNDLVFSRFIDRLNESF"
     gene            526..1746
                     /locus_tag="JN125_004179"
     CDS             526..1746
                     /locus_tag="JN125_004179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenosine phosphosulfate reductase"
                     /protein_id="HAY8873718.1"
                     /translation="MSIYKIPLPLNILEAARERITWTLNTLPRVCVSFSGGKDSGLML
                     YLTAELARQMGKKICVLFIDWEAQFSCSINYVQSLRELYTDVIEEFYWVALPLTTQNS
                     LSQYQPEWQCWEPDVEWVRQPPQDAITDPDFFCFYQPGMTFEQFVREFAEWFSQKRPA
                     AMMIGIRADESYNRFVAIASLNKQRFADDKPWTTAAPGGHSWYIYPIYDWKVADIWTW
                     YANHQSLCNPLYNLMYQAGVPLRHMRICEPFGPEQRQGLWLYHVIEPDRWAAMCARVS
                     GVKSGDIYAGHDNHFYGHRKILKPEHLDWQEYALLLLNSMPEKTAEHYRNKIAIYLHW
                     YQKKGIEVPQTQQGDIGAKDIPSWQRICKVLLNNDYWCRALSFSPTKAKNYQRYNERI
                     KGKRQEWGILCNND"
     gene            1719..>2056
                     /locus_tag="JN125_004180"
     CDS             1719..>2056
                     /locus_tag="JN125_004180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB N-terminal domain-containing protein"
                     /protein_id="HAY8873719.1"
                     /translation="MGDTMQQRLTQDLTQFLASLPEDDRIKAINEIRMAIHQVSPFRE
                     EPVDCVLWVKNSQLMPNDYNPNNVAPPEKKLLQKSIEIDGFTQPIVVTHTDKNAMEIV
                     DGFHRHEIGKG"
BASE COUNT          611 a          469 c          422 g          554 t
ORIGIN      
        1 aatttgtagt aataagcatc cgcgaattac tgacaatagc acttatgaac aaattatggc
       61 agaagagttc acccaattaa tatccaaatc agcaggagtt gatgatattc aaatggaaat
      121 agacgagaag tttatgaatc gcaaaatttc atttcgtgat tcctctttgc tgacaataat
      181 taatagcatt gcagttacag atttactggg aatagtcccc tatgaacttt ataactccca
      241 ccgtgacttt cttaatttaa aagagataaa actagaacat ccgttacctt caataaagct
      301 ttacatttcc tataataaat cttctttaaa tgatttggtg ttctcccgat ttattgaccg
      361 tctaaatgag agtttttgat atataactac agacagctac tataactttc atctatttat
      421 tcacagcgcg aatgaaaaat aaaacactct gctttacagt gtttacttta taattaacag
      481 tcttatctca ctgttcaccc tgtaacgttc agagagcgtc ttcagatgtc tatttataaa
      541 attcctcttc cgctcaatat tctggaagct gcacgagagc gtattacctg gacactcaac
      601 accctacccc gcgtttgtgt ctcattttct ggcggcaaag actctggttt aatgctgtat
      661 ctgacagccg aacttgcccg acaaatgggc aaaaaaatct gcgttttgtt tatcgactgg
      721 gaggcgcaat tctcttgctc tattaactat gttcagtccc tgcgcgagtt gtacaccgat
      781 gtcatcgaag agttttactg ggttgcgctc ccgcttacga cgcaaaattc cctttcacaa
      841 taccaacccg aatggcagtg ctgggaacct gatgtcgaat gggtgcgtca gcccccgcaa
      901 gatgcgataa ccgatcctga ctttttctgc ttttaccagc caggcatgac cttcgaacaa
      961 tttgtacgtg agtttgccga atggttttca caaaaacgtc cggcggcaat gatgatcggc
     1021 atccgtgcgg atgagtccta caaccgtttt gtcgccatcg ccagtttaaa taaacaacgt
     1081 tttgccgacg ataaaccatg gactacggcc gcaccaggcg gtcatagctg gtacatttac
     1141 cccatttacg actggaaagt ggctgatatc tggacctggt atgcaaatca tcaaagtctc
     1201 tgcaaccccc tgtataacct aatgtatcag gcaggcgttc ctctgcgtca tatgcgaatt
     1261 tgcgaacctt ttggcccgga gcaacgacaa ggattatggc tctatcacgt tatcgaaccg
     1321 gatcgctggg ctgctatgtg cgcacgagtc agcggggtaa aaagtggcga catttacgcc
     1381 ggacatgaca atcatttcta tgggcatcgg aaaatcctca agccagaaca tttagactgg
     1441 caagaatatg cattattgct gctcaatagc atgccggaaa aaacagctga gcattaccgc
     1501 aataaaatcg ccatttattt gcactggtat cagaaaaaag gcatcgaggt tccacaaacc
     1561 cagcaagggg acattggcgc gaaagatatc ccctcctggc agcggatatg caaagtttta
     1621 ctcaataacg attactggtg tcgggcatta tcatttagtc ctacgaaagc gaagaactat
     1681 cagcgttata acgaacggat aaaaggaaaa cgtcaggaat gggggatact atgcaacaac
     1741 gattaacgca ggatttaacg caatttctcg ccagcttgcc ggaagatgat cgcatcaaag
     1801 cgattaatga aatccgcatg gcgatccatc aggttagccc ctttcgtgaa gagccagtgg
     1861 attgcgttct gtgggttaaa aacagccaac ttatgcctaa tgattacaac ccaaacaacg
     1921 tggcaccacc cgaaaaaaaa ctgctgcaaa aatccattga aatagatggt tttacccaac
     1981 ccattgtggt cacacatacg gataaaaatg ccatggaaat cgtggatggt tttcaccgcc
     2041 atgaaattgg taaagg
//
LOCUS       DADMHM010000331         2051 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.336, whole genome shotgun sequence.
ACCESSION   DADMHM010000331 DADMHM010000000
VERSION     DADMHM010000331.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2051)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2051)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2051
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.336"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(272..1726)
                     /locus_tag="JN125_004181"
     CDS             complement(272..1726)
                     /locus_tag="JN125_004181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector OspC family protein"
                     /protein_id="HAY8873720.1"
                     /translation="MKIPEAVNHINVQNNIDLVDGKTNPNKATKALQKNILRVTNSSS
                     SGISEKHLDHCANTVKNFLRKSIAAQSYSKMFSQGTSFKSLNLSIEAPSGARSSFRSL
                     EHLDKVSRHYISEIIQKVHPLSSDERHLLSIIINSNFNFRHQSNSNLSNNILNIKSFD
                     KIQSENIQTHKNTYSEDIKEISNHDFVFFGVEISNHQEKLPLNKTHHTVDFGANAYII
                     DHDSPYGYMTLTDHFDNAIPPVFYHEHQSFFLDNFKEVVDEVSRYVHGNQGKTDVPIF
                     NTKDMRLGIGLHLIDFIRKSKDQGFREFCYNKNIDPVSLDRIINFVFQLEYHIPRMLS
                     TDNFKKIKLRDISLEDAIKASNYEEINNKVTDKKMAHQALAYSLGNKKADIALYLLSK
                     FNFTKQDVAEMEKMNNNRYCNLYDVEYLLSKDGANYKVLEYFINNGLVDVNKKFQKAN
                     SGDTMLDNAMKSKNPKMIDFLLKNGAILGKRFEI"
BASE COUNT          615 a          364 c          344 g          728 t
ORIGIN      
        1 cccgtaaaga caggagtcaa gttcccgctc cgacataact gcgtgcaatg gattttgaag
       61 gaaccgtcag cccattcccc ggaggcaaac atgggctggc aaaagtgtag cggtattagg
      121 cacagctatt taggaaagag ggaccatctc catctcatta aatggaccac gccagacaat
      181 tcactgtcat gctgatgctg cactgtgggg acagaatcac tcatgatgac ttcgataatc
      241 gacgacatta ttatttggcc gagcttttag gtcatatctc aaatcgtttg cctaatattg
      301 ctccattttt taataaaaaa tcaatcattt ttggattttt gcttttcatt gcattgtcaa
      361 gcatagtgtc cccactattt gctttttgaa attttttgtt tacatcaacc aatccattat
      421 tgataaaata ttctagcact ttatagttgg caccatcttt actaagtaag tattcaacat
      481 catacagatt acaatatcta ttgttgttca ttttctccat ctctgcgaca tcttgttttg
      541 taaaattaaa tttagatagt aaataaagtg ctatatcagc ttttttattg cctaaagaat
      601 aagcaagggc ctgatgagcc atttttttat cagtcacttt attgttaatc tcttcataat
      661 tagatgcttt aatcgcatcc tccaaagata tgtctctgag ttttattttt ttgaagttat
      721 ctgtacttag cattcttggt atatgatact caagctgaaa cacaaagttt ataattctat
      781 ccagactaac aggatcaata tttttgttat aacaaaactc tctgaatcct tgatctttac
      841 tctttcttat aaaatcaata agatgcaacc caattccaag cctcatatct ttagtgttaa
      901 atattggaac atcagttttc ccctgattac catgcacata cctgctaact tcatccacaa
      961 cctctttaaa gttatctaag aaaaatgatt ggtgctcatg gtaaaaaaca ggtggaatag
     1021 cattatcaaa gtgatcggtt aatgtcatat atccatatgg agagtcatga tcaatgatat
     1081 acgcattggc gccaaaatct acagtatgat gtgttttatt tagtgggagt ttttcttgat
     1141 gattggaaat ttcaacccca aaaaaaacaa aatcgtggtt agagatttct ttaatatcct
     1201 cagagtatgt attcttatgt gtttgtatat tttcagactg aattttatca aaggatttaa
     1261 tattaagaat attatttgac agattagagt tactttgatg tctgaagtta aaattagaat
     1321 taataataat agaaagtaag tgacgttcgt ctgaagaaag aggatgaact ttttgtatta
     1381 tctcagagat atagtgcctg gacaccttat cgagatgctc aagtgaccga aatgatgacc
     1441 gtgctccaga tggcgcttca atagaaagat ttagtgattt gaaactggtc ccttgagaaa
     1501 acattttgct ataactttgc gctgctatag acttccttaa aaagtttttc acagtattag
     1561 cacagtgatc taaatgtttt tcacttatgc cagaagaaga tgagtttgtt acgcgtaata
     1621 tatttttttg taatgctttt gttgctttat tcggattcgt ttttccatca acaagatcaa
     1681 tattattctg aacattaata tgatttactg cttcaggtat tttcatcccc cccccaatta
     1741 tgtgcgtttt tatctgtggt tatttagata acattatcta actggacact ttcttgtatg
     1801 tattatagct aaatgaacag attttaatat gttgtatggt tttcactctg aaatcccctg
     1861 aatttaatca cgtttccttt acggaaggca attttaaccg tagtatcaat tattaaccct
     1921 tgggcttgat atccctctcc tcttctgggc acgggggatg tcagattact tattacagaa
     1981 accaaaagaa ttgtaagcgt catctcagtg tcgtctattt caatgtctga tgattggcga
     2041 tgatagagtc c
//
LOCUS       DADMHM010000332         2043 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.337, whole genome shotgun sequence.
ACCESSION   DADMHM010000332 DADMHM010000000
VERSION     DADMHM010000332.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 2043)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2043)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.337"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..600
                     /locus_tag="JN125_004182"
     CDS             <1..600
                     /locus_tag="JN125_004182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor tail protein L"
                     /protein_id="HAY8873721.1"
                     /translation="ERYFFCNELNEKGEPVTWQGRKYEAYPIDGSGFEMNGRGSSARP
                     SLTVSNLFGLVTGMAEDLQSLVGATVVRRRVYARFLDAVNFVAGNPEADPEQELSDRW
                     VVEQMSQLTAMTASFVLATPTETDGALFPGRIMLANTCMWTYRSDECGYTGGAVADEF
                     DKPTTDIRKDRCSKCMRGCELRRNVGNFGGFLSINKLSQ"
     gene            611..1354
                     /locus_tag="JN125_004183"
     CDS             611..1354
                     /locus_tag="JN125_004183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY8873722.1"
                     /translation="MTQTESAILAHARRCAPAESCGFVISTPEGERYIPCVNISAEPE
                     AYFRIAPEDWLRAEMQGEIVALVHSHPGELPWLSEADRRLQIKSALPWWLVCRGEIHK
                     FRCVPHLTGRRFEHGVTDCYTLFRDAYHLAGIDMPDFHREDDWWRNGQNLYLDNMAVT
                     GFYRVPLSSAQPGDILLCCFGASVPNHATIYCGNGELLHHLPEQLSKRERYSEKWQRR
                     THSVWRHRHWHASAFTGIYNDLAAASACM"
     gene            1252..1932
                     /locus_tag="JN125_004184"
     CDS             1252..1932
                     /locus_tag="JN125_004184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000246273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail assembly protein"
                     /protein_id="HAY8873723.1"
                     /translation="MATTNAFCLASPPLARICLHGDLQRFGRRLSLYVNTAAEAIRAL
                     SMQMPGFRRQMNEGWYQIRIAGDDTAPEAVYARLHEQLGEGTVIHIVPRLAGAGKGGL
                     QIVLGAAAIVGSFFTAGASMALWGSALAAGGFSATTMLFSLGASMILGGVAQMLAPKA
                     KTPDYRATDNGRQNTYFSSLDNMIAQGNPMPVPYGEMLVGSRRISQDISTRDEGGGGK
                     VVVIGRQG"
BASE COUNT          423 a          517 c          670 g          433 t
ORIGIN      
        1 gagcggtatt ttttctgtaa tgagctgaat gaaaaagggg agccggtcac ctggcagggg
       61 cgtaagtatg aggcataccc gattgacggc agcggctttg agatgaacgg ccggggcagc
      121 agtgccagac cgtcgctgac ggtgtccaat ctgttcggtc tggtcaccgg gatggcggaa
      181 gacctgcaga gtctggtggg ggccacggtg gtccgccgcc gggtgtatgc ccgttttctg
      241 gatgcggtga atttcgttgc gggcaatccg gaggcggacc cggagcagga gctgagtgac
      301 cgctgggtgg tggagcagat gtcgcagctg acagccatga cggcctcgtt tgtgctggct
      361 acaccgaccg agacggacgg ggcgctgttt cccggtcgta tcatgctggc gaacacctgt
      421 atgtggacct accgctctga tgagtgtggt tacacgggcg gggctgtggc ggatgagttc
      481 gataaaccca ccacggatat ccgtaaggac agatgcagca agtgcatgcg cgggtgtgaa
      541 ctgcgcagga atgtcggcaa ttttggcggt ttcctttcca ttaataaact ttcgcagtaa
      601 atcccggttt atgacacaga ctgaatcagc gattctggcg catgcccggc ggtgtgcgcc
      661 tgcggagtcg tgcggcttcg tgataagcac gccggagggg gagcggtata tcccttgtgt
      721 gaatatttct gcagagccgg aggcgtattt tcgtatcgca ccggaagact ggctgcgggc
      781 agagatgcag ggggagattg tggcactggt ccacagtcat cccggtgagc tgccctggct
      841 gagcgaggct gaccggcggc tgcagataaa aagcgcactg ccctggtggc tggtctgccg
      901 gggggaaatt cataaattcc gctgtgtgcc acatctgaca ggacggcgct ttgagcacgg
      961 ggtgacggac tgttacacgc tgttccggga tgcataccat ctggcgggaa ttgatatgcc
     1021 ggattttcat cgcgaggatg actggtggcg caacggccag aacctgtacc tggacaatat
     1081 ggcggtcacc ggcttttacc gggtgcccct gtcctctgca cagccgggcg atattctgct
     1141 gtgctgcttt ggtgcttcgg taccgaacca tgccaccatt tactgcggca acggtgagct
     1201 gcttcaccat ctgcctgaac aactgagtaa acgggagagg tattccgaaa aatggcaacg
     1261 acgaacgcat tctgtctggc gtcaccgcca ctggcacgca tctgccttca cggggattta
     1321 caacgatttg gccgccgcct cagcctgtat gtgaacacgg cagcggaagc cattcgcgcc
     1381 ctgtcgatgc agatgccggg ctttcgccgt cagatgaacg aaggctggta ccagatacgt
     1441 attgccggtg atgacacggc accggaggcg gtgtatgccc gtcttcacga acagctgggt
     1501 gagggaacgg tcatccacat tgtgccgcga ctggccgggg ccggaaaggg tggactgcag
     1561 attgtgttgg gggcggcagc catcgtgggc tctttcttca ctgccggggc atcaatggcg
     1621 ttatggggtt cagccctggc agccggtggt ttttctgcca ccacgatgct gttttcactt
     1681 ggagccagca tgattctggg cggtgtggcc cagatgctgg ccccgaaggc aaaaacaccg
     1741 gattaccgcg caacggataa cggcagacag aacacgtact tttcctcgct ggataacatg
     1801 attgcccagg ggaacccgat gccggtgcct tacggggaaa tgctggttgg ctcccgccgt
     1861 atatcccagg acatcagcac ccgtgatgaa ggcgggggcg gaaaggtcgt ggttatcggg
     1921 cgacagggat aaaacataaa aaaatcccgc agtgatcgcg gagctgcggg gacagacaaa
     1981 tgaagatcaa tgtgaaggag ttgtttttgt tactcgggca aaaaaacact aacgcagcga
     2041 aat
//
LOCUS       DADMHM010000333         1950 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.338, whole genome shotgun sequence.
ACCESSION   DADMHM010000333 DADMHM010000000
VERSION     DADMHM010000333.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1950)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1950)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1950
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.338"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(135..1589)
                     /gene="ospC2"
                     /locus_tag="JN125_004185"
     CDS             complement(135..1589)
                     /gene="ospC2"
                     /locus_tag="JN125_004185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 3 secretion system effector OspC2"
                     /protein_id="HAY8873724.1"
                     /translation="MKIPEAVNHINVQNNIDLVDGKINPNKDTKALQKNISCVTNSSS
                     SGISEKHLDHCADTVKSFLRKSIAAQSYSKMFSQGTSFKSLNLSIEAPSGARSSFRSL
                     EHLDKVSRHYLSEIIQKTHPLSSDERHLLSIIINSDFNFRHQSNANLSNNTLNIKSFD
                     KIKSENIQTYKNTFSEDIEEIANHDFVFFGVEISNHQETLPLNKTHHTVDFGANAYII
                     DHDSPYGYMTLTDHFDNAIPPVFYHEHQSFFLDNFKEVVDEVSRYVHGNQGKTDVPIF
                     NTKDMRLGIGLHLIDFIRKSKDQRFREFCYNKNIDPVSLDRIINFVFQLEYHIPRMLS
                     TDNFKKIRLRDISLEDAIKASNYEEINNKVTDKKMAHQALAYSLGNAKSDMALYLLSK
                     FNFTKQDVAEMEKMNNNMYCELYDVEYLLSEDSANYKVLEYFINNGLVDVNKRFQKAN
                     SGDTMLDNAMKSKDSKTIDFLLKNGAVSGKRFGR"
BASE COUNT          619 a          336 c          309 g          686 t
ORIGIN      
        1 tctccaggat tcccggggcg ttcaccacat gcaatgtgtt gttgcagggg aacggtctgc
       61 accatcccct atatcgatca atataacaaa aatgacaacg tcagattcag ggcacaacct
      121 aaatatattt taggtcacct cccaaatcgt ttgcctgata ccgctccatt ttttaataaa
      181 aaatcaattg tttttgaatc tttgcttttc attgcattgt caagcatagt gtccccacta
      241 tttgcttttt gaaatctttt gtttacatca accaatccat tattaataaa atattctagc
      301 actttatagt tggcactatc ttcactaagt aaatactcaa catcatacag ctcacaatac
      361 atattgttgt tcattttctc catctctgcg acatcttgtt ttgtaaaatt aaatttagat
      421 agtaaataaa gtgccatatc agattttgca ttgcctagag aataagcaag agcttgatga
      481 gccatttttt tatcagtcac cttattgtta atttcttcat aattggatgc tttaatggca
      541 tcctccaaag atatatctct gagtcttatc tttttgaagt tatctgtgct tagcattctt
      601 ggtatatgat actcaagctg aaacacaaag tttataattc tatccagact aacaggatca
      661 atgtttttat tataacaaaa ctctcggaat ctttgatctt tactctttct tataaaatca
      721 ataagatgca acccaattcc aagcctcata tctttagtat taaatattgg cacatcagtt
      781 tttccctgat taccatgcac atacctgcta acttcatcca caacctcttt aaagttatct
      841 aagaaaaatg attggtgctc atggtaaaaa acaggtggaa tagcattatc aaagtggtcg
      901 gttaatgtca tatatccata tggagagtca tgatcaatga tatacgcatt agcaccaaaa
      961 tccacagtat gatgtgtttt atttagtggg agtgtttctt gatgattgga aatttcaacc
     1021 ccaaaaaaaa caaaatcgtg gttagctatt tcttcaatat cctcagagaa tgtgttttta
     1081 tatgtttgta tattctcaga cttaatttta tcaaaggact taatattaag agtattattt
     1141 gacaggttag cgttactttg atgtctgaag ttaaaatcag aattaataat aatagagagc
     1201 aagtgacgtt catccgaaga aagaggatga gttttttgta ttatttcaga aagatagtgt
     1261 ctggacacct tatcgaggtg ctcaagtgac cgaaatgatg accgtgctcc agatggcgct
     1321 tcaatagaaa gatttaatga tttgaaactg gtcccttgag agaacatttt actataactt
     1381 tgcgctgcta tagacttcct taaaaagctt ttcacagtat cagcacagtg atctaaatgt
     1441 ttttcactta tgccagaaga ggatgagttt gttacgcatg atatgttttt ttgtaatgct
     1501 tttgtatctt tgttcggatt tatttttcca tcaacaagat caatattgtt ctgaacatta
     1561 atatgattta ctgcttcagg tattttcata aaacatcccc cattatgtgc gtttttatct
     1621 gcagttattt agaataatat tatctaactt aatattttct tgtatgtatt ataacgaaca
     1681 tattttaata tgttgtacga ttttcactct gaaatcccct gagtttaatc acacttcctt
     1741 tactgaaagg aattattgca acagtattat ttgtttttgg atatatatct tgcgccttgt
     1801 tatgtagtta atgctcagaa tatgatagat aaaatagaga cgcagaacag ggcatgctca
     1861 taacatgatg ataacataaa aaattagtaa caataaatga aagaatcatg ggcgctcaac
     1921 aaaaagagag ctaaatagct gcgcggaata
//
LOCUS       DADMHM010000334         1917 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.339, whole genome shotgun sequence.
ACCESSION   DADMHM010000334 DADMHM010000000
VERSION     DADMHM010000334.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1917)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1917)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1917
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.339"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(33..314)
                     /locus_tag="JN125_004186"
     CDS             complement(33..314)
                     /locus_tag="JN125_004186"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873725.1"
                     /translation="MIFFDEEEAEVLRFDNFDDAVECCADLNIPFFVDAGNKKLVFWF
                     VRVDDEGYPEIARCTEREFATIPAGINADGMYCPECGTVHWPDGVIPPF"
     gene            complement(1119..1358)
                     /locus_tag="JN125_004187"
     CDS             complement(1119..1358)
                     /locus_tag="JN125_004187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858310.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="reverse transcriptase"
                     /protein_id="HAY8873726.1"
                     /translation="MPQVGVISPLLSNIILNEFDQYLNKRYLSGKARKDRWYWNHSIQ
                     RGRSTAVKENWQWKPAVAYCCYADDCVPRRRVLGT"
     gene            complement(1553..1917)
                     /locus_tag="JN125_004188"
                     /pseudo
     CDS             complement(1553..1917)
                     /locus_tag="JN125_004188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477168.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="IS3 family transposase"
BASE COUNT          451 a          534 c          453 g          479 t
ORIGIN      
        1 ctgctgaaaa atatcggcaa aacggggaag catcagaaag gcggaataac gccatccggc
       61 cagtgaaccg taccgcattc agggcaatac atgccgtcgg cgttgatacc ggcaggaatt
      121 gtcgcaaatt cccgctccgt gcagcgggca atttccggat acccttcgtc atcaacacgt
      181 acaaaccaga agaccagttt tttgtttccg gcatccacaa agaacggaat attcaggtct
      241 gcgcaacact caacggcatc gtcaaaatta tcaaagcgca gaacctcagc ttcttcttcg
      301 tcaaaaaaaa tcatcttcgt gaagttttac gacatagcgg aggagtttgc ttctttgagg
      361 tgcaggtttt cgtttgcgtg gtttagctga acgggccata taactacctg aaagacaatg
      421 atattgtctg tttttataac ggtaatcaca ggccatgaca agccgcagcc gtcaggccgc
      481 ctactcgggg cggtttagaa cgcttattta gtaccagatc ttacttataa taaaggggct
      541 tggcagtttg gataaactat tgtccttatt ccactaatac aaactttttg taaagtatat
      601 taaatatact tcatttcata ctgaaatccc cggaagtatt caatcaaaca attacaccat
      661 aaaaggaaga gggggcccca attaagttgt caagcatgtt tactgcgcaa tcgcttggtg
      721 ctccgtccct gtaccccgca ttggtactct ggcgctcatg gggcttccac ttgcgcttct
      781 cccttcacat cggggtgaca ggtccacgtt ccccacaaga gcctgaatcg acttcacgcc
      841 gcttttatgc cggatgccgc gcaggcagta aacatatccc acaggaacga ctccaccatt
      901 gttttgacat catctatatg ctttcgacac atcatcagcg gttcactttc gttcgtctct
      961 tcgaaccata cctgatcggc tcacgtccga ccttttccca tcttgctcac caccacatct
     1021 cttaaatgca gcagcagtgg atggtttggt gcctgcgcct gcacgccgac accgaggggc
     1081 cttccctcat ctcttgtgcc gcatggctgc acagggactc acgtccccag gacgcgcctt
     1141 cgtggcacac agtcatcggc atagcaacag taagcaacgg caggtttcca ttgccagttt
     1201 tctttgacag cagtacttcg gcctcgctgg atactgtgat tccagtacca gcgatccttt
     1261 ctggcttttc cactcaggta gcgtttattc agatactggt cgaactcatt cagtatgatg
     1321 ttcgacagca acggcgagat cacaccgacc tgtggcatac tttcactgac cgcccggaag
     1381 agaccaacat caacacggcg ttttccaccg cagtctcata aaacgtgcat cactgatcct
     1441 gcggcagacg gctttcatca gcagccggtg atgtactgtg tcgaagtagc tggacaggtc
     1501 accttcaata acccggcgcc ccgtgtttcc ccgcagtcgg tgagctgtaa tagtacgtga
     1561 tgtctcccgc ccacttctgg ttcgggccac tggcgtaaaa atcctgcgtc agcagatttt
     1621 ctgatacagg caggccgtgt gcacggtaac tgatcgggct gaacttctgg gaggcttttg
     1681 cgctcagttc ctgacggcgc agactggctg ccacggtttt tacgttaaag tggtaaccag
     1741 agcacacagt tcatccgtca ggcgtggggc accgtaacgc tggactgggt aaaagccttg
     1801 cggacaacgc tgtcgcagtg ctgacggaac tgctgacgtg tgtttatcct tgtccgccgc
     1861 tgacaccacg tataccagcc gctgcgggcc acccggagta cgcggcacat tgccttg
//
LOCUS       DADMHM010000335         1882 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.340, whole genome shotgun sequence.
ACCESSION   DADMHM010000335 DADMHM010000000
VERSION     DADMHM010000335.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1882)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1882)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1882
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.340"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            314..1102
                     /gene="virF"
                     /locus_tag="JN125_004189"
     CDS             314..1102
                     /gene="virF"
                     /locus_tag="JN125_004189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858179.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family invasion system transcriptional
                     regulator VirF"
                     /protein_id="HAY8873727.1"
                     /translation="MMDMGHKNKIDIKVRLHNYIILYAKRCSMTVSSGNETLTIDEGQ
                     IAFIERNIQINVSIKKSDSINPFEIISLDRNLLLSIIRIMEPIYSFQHSYSEEKRGLN
                     KKIFLLSEEEVSIDLFKSIKEMPFGKRKIYSLACLLSAVSDEEALYTSISIASSLSFS
                     DQIRKIVEKNIEKRWRLSDISNNLNLSEIAVRKRLESEKLTFQQILLDIRMHHAAKLL
                     LNSQSYINDVSRLIGISSPSYFIRKFNEYYGITPKKFYLYHKKF"
     gene            complement(1044..1454)
                     /locus_tag="JN125_004190"
     CDS             complement(1044..1454)
                     /locus_tag="JN125_004190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001409096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HAY8873728.1"
                     /translation="MPFHRPTKWVQYISAAPALSQQAVDQEWSYMDFLEHLLHEEKLA
                     RHQRKQAMYTRMVAFPAVKTFEEYDFTFATRAPQKQLQSLRSLSFIERNENIVLLGPS
                     GVGKTHLAIAMGYEAFKIFYDISKISLELYHNIH"
     gene            1465..1882
                     /locus_tag="JN125_004191"
                     /pseudo
     CDS             1465..1882
                     /locus_tag="JN125_004191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611947.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT          597 a          336 c          371 g          578 t
ORIGIN      
        1 ttccgtatag gatattatga tgctggagtt ttgcgaagct ccactccttt ccgaacattt
       61 acacagatat tgcctaagaa aagtgaaacc ataatatggt tatagtccct ttcagtgcaa
      121 atacttagct tgttgcacag agaaatagaa gctgcataag ctctttcttc aaaaaatgta
      181 aataaagtta aatataggaa aaattactta atctatctta ataacggaaa gattttgtat
      241 acaatcactg ttacagaaat ttcttagtta ctctgtaaac actaaatata gtttggtata
      301 ttctgttgaa tttatgatgg atatgggaca taaaaacaaa atagatataa aggttcgctt
      361 gcataactat attattttat atgcaaaaag gtgttcaatg acggttagct caggcaatga
      421 aactttgact atcgatgaag ggcaaattgc ttttatagag cgaaatatac aaataaacgt
      481 ctccataaaa aaatctgata gcattaatcc atttgagatt ataagccttg acagaaattt
      541 attattaagc attattagaa taatggaacc aatttattca tttcaacact cctattctga
      601 ggagaaaagg gggttaaaca aaaaaatatt cctcctctct gaggaggagg tttctatcga
      661 tttgttcaaa tctataaaag agatgccttt cggcaaaaga aagatctata gtttagcttg
      721 ccttttatca gctgtttctg atgaggaagc tttatatact tcgatatcga tagcttcttc
      781 tcttagtttt tctgatcaga taaggaagat tgttgaaaaa aacatcgaga agagatggcg
      841 tctttctgat atttcaaata acttgaattt atcagaaata gctgttagaa aacgactgga
      901 gagtgaaaaa ttaacatttc aacaaatcct tcttgatatt cgcatgcatc atgcagcaaa
      961 gcttttattg aatagtcaaa gctatattaa tgatgtatca agacttatcg gaatatcaag
     1021 cccatcttat tttataagga aatttaatga atattatggt ataactccaa agaaatttta
     1081 cttatatcat aaaaaatttt aaatgcttca tagcccatcg ctattgccag atgggttttc
     1141 cccacacctg atggccctag taatacgata ttttcattac gttctatgaa gctgagtgag
     1201 cgtaacgact ggagttgctt ctgcggtgct ctggtggcga atgtgaagtc atactcttcg
     1261 aacgttttca ccgccgggaa ggctaccatt cgggtataca tcgcctgttt acgttgatga
     1321 cgtgccagtt tttcttcatg aagcagatgc tccaggaagt ccatataact ccattcctgg
     1381 tctactgcct gttgtgacag cgcaggcgct gcgcttatgt actgcaccca ttttgttgga
     1441 cgatgaaatg gaatagcccc taatatgtca aagccaaaat acccttttga aaagcgcctt
     1501 gaagtcgtga atcactactt cactactgat gatggttaca ggatcatctc ggcacgtttt
     1561 ggtgtccccg aacccaggtc aggacatggg ttgccctcta tgaaaaacat ggagaaaaag
     1621 gcttaattcc caaacctaaa ggtgttagtg ctgatccaga gttgcgtatt aaggtcgtga
     1681 aagctgtgat tgagcagcac atgtccctta atcaggctgc tgctcacttt atgcttgctg
     1741 gtagtggttc tgtagccagg tggctgaagg tttatgaaga gcgcggagaa gctggtttac
     1801 gcgcgctcaa gattggcacc aaaagaaaca ttgcaatatc agttgatcca gaaaaagcgg
     1861 catcagcatt ggagctgtca aa
//
LOCUS       DADMHM010000336         1869 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.341, whole genome shotgun sequence.
ACCESSION   DADMHM010000336 DADMHM010000000
VERSION     DADMHM010000336.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1869)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1869)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1869
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.341"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            247..429
                     /gene="tnpB"
                     /locus_tag="JN125_004192"
     CDS             247..429
                     /gene="tnpB"
                     /locus_tag="JN125_004192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000950098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="HAY8873729.1"
                     /translation="MLWADRDGLCLFAKRLERGRFVWPVTREGKVHLTPAQLSMLLEG
                     IAWQHPKRTERPGIRI"
     gene            449..>1869
                     /locus_tag="JN125_004193"
     CDS             449..>1869
                     /locus_tag="JN125_004193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66-like element ISSfl3 family transposase"
                     /protein_id="HAY8873730.1"
                     /translation="MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQL
                     DRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSP
                     PSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQL
                     DIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIP
                     LYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVL
                     APGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADA
                     YAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGS
                     PAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDG
                     WVEIDNNIGENALRSVAVGRKNYL"
BASE COUNT          526 a          450 c          530 g          363 t
ORIGIN      
        1 taacaaaagg gtgaatgctg aaaggttgct atggcggcca gagtgatgac aaagacaggt
       61 aagaccgtga ctcactaaac ctgaacagta ttttgggctt gaagtccgcc gtgaaaataa
      121 ggggtgagtc ggcgaattac ataggggctc gcagcgttac ggctgcaata aagccggata
      181 taaagctgca accaacccgt catgtcaaaa caatggatgc cttgcaaacg ggatgcgttc
      241 atataaatac tgtgggccga tcgtgacggg ttatgcctgt tcgccaaacg cctggaacgg
      301 ggccgcttcg tctggccggt gacccgggaa gggaaagtgc acctgacgcc agctcagtta
      361 tccatgctac tggaggggat cgcgtggcaa catcccaaac ggacagaacg gcctggcatc
      421 cggatataac ccgtgataaa acaagggaat gaacaatgaa ctccccgatg atattgagct
      481 gcttaaagcc atgttgcgta agcaacagag tcggcttcga cagtatgcct gtcaggtcgc
      541 gggctatgag caggaaattg aacggctgaa agcgcaactc gacaggttgc gtcgtatgct
      601 gttcggccag agttcagaga aaaagcgtca taagcttgaa aatcagatcc gacaggcaga
      661 aaaacgactg tcggaactgg aaaaccgact gaacacagcc agaaatcttc tggaagatgc
      721 atcgtcagtc acagattcac ctgacaccag tcccccgtca gaaaacccga tcgccagtaa
      781 gcctgaatcc ccgggacgaa aatcttcacg aaaaccgctg ccggcagaac ttccccggga
      841 gacacatcgc cttctgcctg ctgaaaccag ttgcccggcc tgtggaggtg ttctgaaaga
      901 aatgggggaa acaatctcag agcaactgga tatcattaat accgccttta aagttatcga
      961 aaccatacgt cccaaactgg cctgtagccg gtgtgatgtc atcgttcagg caccacttcc
     1021 ccctaaaccg atcgaacgcg gttatgccag tgcagggtta cttgcacgga tcctggtcag
     1081 caaatatatg gaacatatcc ctttatatcg ccagtcagaa atatacgcgc gacagggcgt
     1141 ggagctgagc cgtaatacca tggtgcgctg ggtatcagaa atggcagaca aactccgtcc
     1201 tctgtatata gcgctgaatg actatgttct ggaggcagga aaggtgcacg cagatgacac
     1261 tccggtgaaa gtactggccc cggggaacgg aaagacgaaa acgggtcgtc tgtgggtata
     1321 cgtcagggat gatcgtaatg cgggttcatc cctgccggca gccgtctggt tcgcgtattc
     1381 ggcagatcgc aaaggagaac atccgcagct ccacctggca aagtatcagg gcgtactgca
     1441 ggctgatgcc tatgcaggtt ataacgtact gtacgaaacg ggccgggtga aggaagccgg
     1501 gtgcctggcc cacgcccgcc gaaaaatcca tgacgaggat gtgcgccgtc cgacagaaat
     1561 gactcaggaa gcgctcagac ggatagcaga gttatacgac atagaagcgg agatacgtgg
     1621 cagtccggca gaggaacggc ttgcagtcag aaaagccaga agcgtccagt tgatgcagtc
     1681 attgtacgac tggatacagt tgcagaggaa aacgctgtcg aaacatgcgg agatggcgaa
     1741 ggcgttcgac tatatcctga atcactggaa tgcgctgaac gagttctgtc gtgacggctg
     1801 ggtggaaata gacaacaaca tcggtgaaaa cgcgttacga tcggtggcgg ttggaagaaa
     1861 aaattatct
//
LOCUS       DADMHM010000337         1843 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.342, whole genome shotgun sequence.
ACCESSION   DADMHM010000337 DADMHM010000000
VERSION     DADMHM010000337.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1843)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1843)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1843
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.342"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..704
                     /locus_tag="JN125_004194"
     CDS             <1..704
                     /locus_tag="JN125_004194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HAY8873731.1"
                     /translation="NLDQLVSMTSIEIAELTGKEHRNVLRDIRNMAEELNALKTEQCS
                     KLSSHIGVTKDVYLNAQGKQQPLYRLDRKHTFILVAGYSVHLRAKCYDHIQTLERRVL
                     QLEDQKKRAAIQSANRRGVTWGDYCKTYDLPAQKLMTALLQHRGLFRKNPISNEWSVN
                     PKYSDCFRIIKPSDQKFSAGGYNFRFNAKGLEVFGKPAIVDKLRGILIAFTGTDQQKQ
                     EHLLKQAQSGKLEGL"
     gene            1018..1509
                     /locus_tag="JN125_004195"
     CDS             1018..1509
                     /locus_tag="JN125_004195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873732.1"
                     /translation="MLFNNNEWKLSVTDIDLYANTCKLDGQSYPLSLAIKTLIPGYLS
                     GLPSTSREAMELLEALAEAGVAIGNFFSNDLLTAYQRRQMNKRVEAERIAKELASQKE
                     RTREMFMTEDEWQKELQRREQVKAERRTYGENLRSATHSAGRSRASIMADLDSGANWM
                     DSL"
     gene            1593..>1843
                     /locus_tag="JN125_004196"
     CDS             1593..>1843
                     /locus_tag="JN125_004196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873733.1"
                     /translation="MTMTKDALQFGIEPVRITDTDNMQVNEGLPTNADPQVYAFQLAK
                     LVKTMLNSVLKDAQDNIPFPVEVLPTRNSLPTPIIAHTLA"
BASE COUNT          483 a          505 c          444 g          411 t
ORIGIN      
        1 caaacctcga ccagcttgtc tccatgacct caattgaaat tgctgagctg acaggcaagg
       61 agcaccgaaa tgtcctgcgt gatattcgca atatggctga ggagcttaac gcgctcaaaa
      121 ctgagcagtg ctcaaaactg agcagtcata tcggggtgac taaagatgtt tatctaaacg
      181 cgcaggggaa acagcagcct ctgtaccgtc tcgaccgtaa gcatactttt attctggtcg
      241 ctggctattc cgttcacctc cgcgccaagt gttacgacca tattcagacg ttagagcgtc
      301 gagtccttca actggaagac cagaagaagc gagcagccat tcagtctgct aaccgtcgag
      361 gcgtgacttg gggcgactac tgcaaaacct atgatctacc cgctcagaag ctaatgaccg
      421 cacttctcca gcatcgtggc ctctttcgta agaacccaat cagtaacgag tggtctgtaa
      481 atccgaagta ttccgactgc ttccgtatca ttaagccgtc tgaccagaag ttctcagcag
      541 gtggttataa ctttcgcttc aacgctaagg gattggaggt cttcggtaag cctgcgatag
      601 tcgataaact gcgaggcatc cttattgcct tcactggcac cgaccagcag aagcaagagc
      661 atctcctgaa gcaggcccaa tccggcaagc tggagggact ctaagatgat tgacccgcgc
      721 acacctgagg gccgcatgac tctccgttac cgtggctacc ggactgaagt cctcctcaga
      781 gagcttggtc tagacccgga agatgagacc cgccagcacc aatcacgaga cgagctgata
      841 gtgcaactgg tcgctatgaa actgccgtca gctagcaagc tagcgcctaa ccgttagcag
      901 ctcacctact taatacctca ttttaaacct tttgagatga ccgatgcggg gagacgccgc
      961 aggactaaac acgcctgtgg tcgaccgata gtctcaacct caaaggagta ccagcatatg
     1021 ttattcaaca acaacgaatg gaaactgtca gtcaccgaca tcgaccttta cgcaaatact
     1081 tgcaagctgg acggtcagtc ctatccgttg tcgctcgcta tcaagaccct cattccgggc
     1141 tatctgtcag gcctgccgtc taccagccgc gaggcaatgg agttactgga agctctggct
     1201 gaagctggtg tagctattgg caacttcttc agtaatgacc tgctgaccgc ctaccaacgc
     1261 cgccagatga ataagcgtgt cgaggctgag cgtatcgcta aagagctggc gtctcagaaa
     1321 gagcgtaccc gcgaaatgtt catgaccgaa gacgaatggc agaaagagct acagcgccgc
     1381 gaacaggtca aagctgaacg ccggacatat ggtgagaacc tccgcagtgc tacccattcc
     1441 gctggtcgct cacgtgcatc aattatggct gacctcgata gtggcgctaa ctggatggac
     1501 agcttgtaag caagcgaccc tcatctgaga acacacggtc cctgactgcc tgttagggac
     1561 ttcaagtatt tgactcaagg agattaatta ttatgaccat gacaaaagac gctttacagt
     1621 ttggcattga gccagttcgc attactgata ctgacaacat gcaggtaaac gaaggtctcc
     1681 cgactaacgc cgaccctcag gtctatgcct tccagttagc taagctggtg aagaccatgc
     1741 tcaattctgt acttaaagac gctcaggata acattccgtt ccctgtagaa gtcctgccga
     1801 cccgtaacag cttaccgact ccaatcattg ctcacactct ggc
//
LOCUS       DADMHM010000338         1833 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.343, whole genome shotgun sequence.
ACCESSION   DADMHM010000338 DADMHM010000000
VERSION     DADMHM010000338.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1833)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1833)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1833
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.343"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            78..452
                     /locus_tag="JN125_004197"
     CDS             78..452
                     /locus_tag="JN125_004197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001459679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RusA family crossover junction
                     endodeoxyribonuclease"
                     /protein_id="HAY8873734.1"
                     /translation="MLIDLVLPYPPTVNTYWRRRGSTYFISEEGKRYRRAVALIVRQQ
                     RLKLSLSGRLAIKVIAEPPDKRRRDLDNILKAPLDALTHAGVLMDDEQFDEINIVRGQ
                     PVSGGRMGVKIYPIMHEEQVKK"
     gene            449..1270
                     /locus_tag="JN125_004198"
     CDS             449..1270
                     /locus_tag="JN125_004198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitermination protein"
                     /protein_id="HAY8873735.1"
                     /translation="MKLEDLPKYYSPKSPSLTDASASTSKDALSITDVMAAQGMTQNR
                     AEMGFSAFLGKMGISMNDRARATELLADYALSRCDRVAALRKLPAEIKPVVMRIMASY
                     AFEDYARSAASKKQCPCCHGKKFIESEVFTNKIQYPDGKPPVWAKCTKGVYPSYWEEW
                     KKVREVVKVACPECGGKGEVSTACKDCRGRGVAIHREESVKRGMPVIRDCQRCGGRGC
                     ERLPSTEAFNAICKVTSAITLDTWKKSVKRFYDTLVVRFDIEEAWAERQLKRVTR"
     gene            1497..1737
                     /locus_tag="JN125_004199"
                     /pseudo
     CDS             1497..1737
                     /locus_tag="JN125_004199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309113.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          468 a          378 c          535 g          452 t
ORIGIN      
        1 gttctcaggt tgatttaatt tttcgttttc ttgatcacgc ctttgcaact ggcgtgcttg
       61 ggtaaaagag gtgactgatg ctcatagatt tggttttacc ttacccgccg acggtgaaca
      121 cttactggcg acgccgtggc agcacatatt ttatctcgga ggagggaaag cgttatcgcc
      181 gggctgtggc gcttattgtt cgccagcagc ggctgaaatt aagcctgtcc ggaaggctgg
      241 cgataaaggt gattgcagag ccaccggata agcgtcgtcg cgacctggac aatatcctga
      301 aagcaccgct ggatgcgctg acgcatgcgg gagtgttaat ggacgatgag cagtttgatg
      361 aaatcaatat cgttcgtggt cagccagtat ctggtggacg tatgggggtg aagatttacc
      421 ccataatgca tgaagagcag gtcaaaaaat gaaactggaa gatttaccga aatactactc
      481 cccaaaatcc cctagcctga ccgatgcatc ggcctcaacg tcaaaagatg cgctgagtat
      541 cactgatgtg atggccgcgc agggcatgac acagaatcgg gctgagatgg ggttttctgc
      601 gttcctgggg aaaatgggca tcagtatgaa tgacagggcg cgggcaacag aattactggc
      661 agattatgca ctcagtcggt gcgatcgtgt agcggcgttg agaaaacttc cggcagaaat
      721 aaaaccggta gtgatgcgca ttatggcttc gtatgcgttt gaagattatg cccgtagcgc
      781 ggcgagcaaa aaacagtgcc cctgctgtca cggaaaaaaa tttattgaaa gcgaggtttt
      841 tacaaacaag atccagtatc cggatggtaa gccaccagtg tgggcaaagt gcacaaaagg
      901 cgtgtatccg tcttactggg aagaatggaa aaaagtcagg gaggtggtaa aagttgcctg
      961 tccggagtgt ggcggaaagg gtgaggtttc caccgcctgt aaggattgcc gtgggcgtgg
     1021 tgtcgccatt catcgtgaag agtcggtaaa acgtggtatg cctgttatca gagactgcca
     1081 gcgttgtggt ggtcgtggct gtgaaagact accatcaacg gaggcattta atgccatatg
     1141 caaagtgacg agtgctatca cgcttgatac gtggaaaaaa tcagtgaaac gcttttacga
     1201 tacgttggtg gttcggtttg acattgaaga ggcatgggcg gagcggcagt taaagagggt
     1261 aacgcgatag tgttgttgat ttttcccgaa tctgtggtaa atttgctcta atgatgggcg
     1321 ttttatgcct gacgttagaa gattttttac accccgccgc ctggcgggtt ttttatgact
     1381 gaaatcgcgt cagtacagta aacgcgctgg tggcggtgaa tacctgtctt tcagcttgct
     1441 ggctttttcg acaagagtta ttggtgtgtc acgttaaccg gaaaagggaa aaagacatgc
     1501 taaaacagca ggatatgaca gaaaccgcca gagtggtgtt taatgaatta agcgttaccg
     1561 aaccggcgac agtcggggag atagcgcaga atacttacct ttcacgcgaa cgctgccagt
     1621 taatactgac ccagctggtt atggcgggtc tggcagacta tcagttcggt tgttacagac
     1681 gccttccgca gtgaaggctt ttttatttgt ggtaaatggg cggctggtgg gtgttagggg
     1741 cacccaccag ccatctgctc atgcgttggg ttcacaagca aacctcaggc ccactgcttt
     1801 gcgcaaaagc agaatgagcc tatcagagac agg
//
LOCUS       DADMHM010000339         1791 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.344, whole genome shotgun sequence.
ACCESSION   DADMHM010000339 DADMHM010000000
VERSION     DADMHM010000339.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1791)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1791)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1791
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.344"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..90
                     /gene="yoaK"
                     /locus_tag="JN125_004200"
     CDS             <1..90
                     /gene="yoaK"
                     /locus_tag="JN125_004200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YoaK family small membrane protein"
                     /protein_id="HAY8873736.1"
                     /translation="GIIFPVVIFITAVVFLAWFFIGGYAAPGA"
     gene            93..167
                     /gene="yoaJ"
                     /locus_tag="JN125_004201"
     CDS             93..167
                     /gene="yoaJ"
                     /locus_tag="JN125_004201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002791243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YoaJ"
                     /protein_id="HAY8873737.1"
                     /translation="MKKTTIIMMGVAIIVVLGTELGWW"
     gene            complement(226..474)
                     /locus_tag="JN125_004202"
     CDS             complement(226..474)
                     /locus_tag="JN125_004202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GlsB/YeaQ/YmgE family stress response membrane
                     protein"
                     /protein_id="HAY8873738.1"
                     /translation="MGILSWIIFGLIAGILAKWIMPGKDGGGFFMTILLGIVGAVVGG
                     WISTLFGFGKVDGFNFGSFVVAVIGAIVVLFIYRKIKS"
     gene            complement(622..804)
                     /locus_tag="JN125_004203"
     CDS             complement(622..804)
                     /locus_tag="JN125_004203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1869 domain-containing protein"
                     /protein_id="HAY8873739.1"
                     /translation="MGKATYTVTVTNNSNGVSVDYETETPMTLLVPEVAAEVIKDLVN
                     TVRSYDTENEHDVCGW"
     gene            complement(808..1168)
                     /gene="yeaR"
                     /locus_tag="JN125_004204"
                     /pseudo
     CDS             complement(808..1168)
                     /gene="yeaR"
                     /locus_tag="JN125_004204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310533.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1971 domain-containing protein"
     gene            complement(1341..>1791)
                     /gene="leuE"
                     /locus_tag="JN125_004205"
     CDS             complement(1341..>1791)
                     /gene="leuE"
                     /locus_tag="JN125_004205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="leucine efflux protein LeuE"
                     /protein_id="HAY8873740.1"
                     /translation="GVATLIKTTPILFNIVRYLGAFYLLYLESKILYATLKGKNNEAK
                     SDEPQYGAIFKRALILSLTNPKAILFYVSFFVQFIDVNAPHTGISFFILATTLELVSF
                     CYLSFLIISGAFVTQYIRTKKKLAKVGNSLIGLMFVGFAARLATLQS"
BASE COUNT          499 a          418 c          395 g          479 t
ORIGIN      
        1 ggtattattt ttccggttgt aatctttatt acagcggtcg tatttttagc atggtttttt
       61 attggcggct atgctgcccc gggggcataa agatgaaaaa aacaacgatt attatgatgg
      121 gtgtggcgat tattgtcgta ctcggcactg agctgggatg gtggtaacgt cacctctaaa
      181 aaatagtaaa ggctgcctgt gtgcagcctt tgtgcaattt aagcgttaac ttttaatctt
      241 cctgtagata aatagcacga caatcgcacc aataacggca accacgaagc tgccaaaatt
      301 gaagccatcg actttaccaa agccaaacag cgtgctgatc catccgccga ctacggcacc
      361 gactatcccc agcaggatag tcataaagaa tccaccacca tctttacctg gcatgatcca
      421 cttcgccaga ataccggcaa taagcccaaa aataatccat gacagaatgc ccattgtttc
      481 ctcacttatc tgttttgcat tagcgggtta gtcgctgata aaaagcatag cacaacatcg
      541 ggagggcaag atttgtgacg agcatcacgg aggatttttt tgcgatggcg cagaaattgc
      601 gccatcaacg atcagtgata attaccaacc acaaacatca tgttcgtttt ccgtgtcata
      661 agaacgcacg gtattcacca gatcttttat cacttcagcc gccacttctg gcaccagcaa
      721 agtcatcggc gtctctgttt cataatcgac agaaacgcca ttactgttat tggtgacggt
      781 cacggtatac gttgctttgc ccatgattca tttcccgtta tgaatgactt tccgttgttg
      841 cgcaccttcc atcaggactt caggagccac gaagaagtca atgttgaaat aagtatcgtc
      901 agtcatggct tcaatgttgt gccacttttc tggagggaac accgcaaact gccccgcttc
      961 gataaggatc acctgatcag gctctgcact gtgttcatca gcgtagccga gatatttgac
     1021 cgccccatgc ataacggaaa ggcgtgggta acccccctgg cgcgttcctt tatcaagatg
     1081 acgttcgaat tattccggca ggcgcagttt gtttattcca gaaaggcgtt gagcgcgtat
     1141 gaatataatt ctgtgggatt tgcagcatcc ttttccctcc ttcggtgaat gcgctgaaaa
     1201 cggtttattc cagccgtttc agggtacgcc tgataatttg cattttaaat accatttatt
     1261 ggttactttt tagcaccata tcagagaaaa atcagggagg attacaagtg ggaagcccgc
     1321 gacaacgcgg gctgaatgta tcaggattgc agcgtcgcca gtcgggcggc gaaacccacg
     1381 aacatcaaac caatcagtga gttgccaact ttagccagtt tctttttggt acgtatgtac
     1441 tgcgtgacaa aagcaccaga aataatcagg aagctcaaat agcagaaact caccagttcc
     1501 agcgtcgtcg ccagaataaa gaatgaaatt cccgtatgtg gggcattaac atcgataaac
     1561 tgtacgaaaa acgacacata gaacaaaatg gctttcggat tagtcaggct caaaattaac
     1621 gcgcgtttaa aaatggcccc gtattggggc tcatcggatt tggcctcgtt atttttaccc
     1681 ttcagggtcg cgtagagaat tttactctcc agatatagca aataaaacgc accaagataa
     1741 cgtacaatgt tgaataatat cggggtggtc ttaattaatg tcgccactcc a
//
LOCUS       DADMHM010000340         1784 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.345, whole genome shotgun sequence.
ACCESSION   DADMHM010000340 DADMHM010000000
VERSION     DADMHM010000340.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1784)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1784)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1784
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.345"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            263..370
                     /locus_tag="JN125_004206"
     CDS             263..370
                     /locus_tag="JN125_004206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I toxin-antitoxin system toxin Ldr family
                     protein"
                     /protein_id="HAY8873741.1"
                     /translation="MTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK"
     gene            complement(457..>1784)
                     /gene="bcsG"
                     /locus_tag="JN125_004207"
     CDS             complement(457..>1784)
                     /gene="bcsG"
                     /locus_tag="JN125_004207"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsG"
                     /protein_id="HAY8873742.1"
                     /translation="IGAIFVLLVAWLFLSQWIRITVFVVAILLWLNVLTLAGPSFSLW
                     PAGQPTTTVTTTGGNAAATVATTGGAPVVGDMPAQTTPPTTANLNAWLNNFYNAEAKR
                     KSTFPSSLPADAQPFELLVINICSLSWSDIEAAGLMSHPLWSHFDIEFKNFNSATSYS
                     GPAAIRLLRASCGQTSHTNLYQPANNDCYLFDNLSKLGFTQHLMMGHNGQFGGFLKEV
                     RENGGMQTELMDQTNLPVILLGFDGSPVYDDTAVLNRWLDVTEKDKNSRSATFYNTLP
                     LHDGNHYPGVSKTADYKARAQKFFDELDAFFTELEKSGRKVMVVVVPEHGGALKGDRM
                     QVSGLRDIPSPSITDVPVGVKFFGMKAPHQGAPIVIDQPSSFLAISDLVVRVLDGKIF
                     TEDNVDWKKLTSGLPQTAPVSENSNAVVIQYQDKPYVRLNGGDWVPYPQ"
BASE COUNT          432 a          457 c          483 g          412 t
ORIGIN      
        1 aattaagctg gaaggcatcg cgcaatgagg aagattgccg ggtgctgaca gtaaaaagca
       61 atcgtaaaat cagcggcaag ccgaaagggt tccggtgagg cgcaatgttg cgggggcttt
      121 atccctggtg gcattggttg ctggagagag aaaacccccg cacgttgcag gtatgcacct
      181 gacaacatca cgggggctaa tcttgaaccc aaacaactca agaatagccg cgaaacgttg
      241 gcattacaac acaggcggct atatgacgct cgcagaactg ggcatggcct tctggcatga
      301 tttagcggct ccggtcattg ctggcattct tgccagtatg atcgtgaact ggctgaataa
      361 gcggaagtaa cgtgtcatgc gggcgtcagg ctgccgtaat ggcaatttgc gcccggatca
      421 ggccgcagag gttaaactct gcggcctttt tcgtgcttac tgcgggtaag gcacccagtc
      481 gccgccgttc aggcgaacgt acggtttatc ctggtattga ataactactg catttgagtt
      541 ctcggagacc ggtgctgttt gtggcaaccc actggtgagt tttttccagt caacattgtc
      601 ttcggtgaaa atcttgccat caagaacgcg aaccaccaga tcggagatag ccaggaagct
      661 gctcggttgg tcgatgacaa tcggtgcccc ctgatgtggt gccttcatgc cgaagaattt
      721 caccccaacg gggacgtctg tgatagacgg gctagggata tcacgtaggc cagatacctg
      781 cattctgtcg cccttcagcg cgccgccgtg ttccggcacc acgaccacca tcactttacg
      841 acccgatttc tccagttcag taaagaaggc gtccagttca tcaaagaatt tctgcgcccg
      901 cgctttgtaa tccgctgttt tgctgacccc cggataatgg ttgccgtcat gcagtggaag
      961 cgtgttgtag aacgtggcac tacggctgtt tttatctttt tcggtaacgt ccagccagcg
     1021 gttaagcacg gcggtatcgt cataaaccgg cgaaccatca aagcccagca aaataaccgg
     1081 cagatttgtt tgatccatca attcagtctg catgccgcca ttttcgcgaa cttctttcaa
     1141 aaaaccgccg aactggccgt tatgtcccat catcaggtgc tgggtaaagc ccagtttcga
     1201 aaggttatca aacagatagc agtcgttatt tgccggttga tacagattag tgtgcgaagt
     1261 ctgcccgcag ctggcgcgca gtaaacggat cgccgccggg ccactgtagg aggtggcgga
     1321 gttaaagttc ttgaactcaa tatcgaaatg cgaccacagt ggatgcgaca tcaacccggc
     1381 ggcttctata tccgaccagg aaagcgaaca gatgttaatc accagtagtt caaatggctg
     1441 agcatcagcg ggcagcgaag acgggaaggt cgatttacgt ttcgcctccg cgttatagaa
     1501 attattcagc caggcgttaa ggttcgccgt tgttggcggt gtagtttgtg cgggcatatc
     1561 acccactacc ggtgcgccac ccgtcgtcgc aacggttgcc gctgcgttac cacccgtcgt
     1621 tgttacagtg gtcgtcggtt gtccggctgg ccacaaggag aaacttggtc ccgccagggt
     1681 aagtacgttc agccatagca gtatggcaac cacaaaaacg gtaatgcgaa tccattgtga
     1741 caggaataac caggccacta ataaaacaaa aatggcccca atca
//
LOCUS       DADMHM010000341         1770 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.346, whole genome shotgun sequence.
ACCESSION   DADMHM010000341 DADMHM010000000
VERSION     DADMHM010000341.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1770)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1770)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1770
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.346"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(271..1506)
                     /locus_tag="JN125_004208"
     CDS             complement(271..1506)
                     /locus_tag="JN125_004208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic sulfatase maturase"
                     /protein_id="HAY8873743.1"
                     /translation="MLQQVPTRAFHVMAKPSGSDCNLNCDYCFYLEKQSLYREKPVTH
                     MDDDTLEAYVRHYIAASEPQNEVAFTWQGGEPTLLGLDFYRCAVKLQAKYGAGRKISN
                     SFQTNGVLLDDKWCAFLAENHFLVGLSLDGPAEIHNQYRVTKGGRPTHKLVMRALTLL
                     QKHHVDYNVLVCVNRTSAQQPLQVYDFLCDAGVEFIQFIPVVERLADETAASDGLKLH
                     APGDIQGELTEWSVHPDEFGEFLVAIFDHWIKRDVGKIFVMNIEWAFANFVGAPGAVC
                     HHQPTCGRSVIVEHNGDVYACDHYVYPQYRLGNMHQQTIAEMIDSPQQQVFGEDKFKQ
                     LPAQCRSCNVLKACWGGCPKHRFMLDASGKPGLNYLCAGYQRYFRHLPPYLKAMADLL
                     AHGRPASDIMQAHLLVVNK"
     gene            complement(1653..1729)
                     /locus_tag="JN125_004209"
     tRNA            complement(1653..1729)
                     /locus_tag="JN125_004209"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1693..1695),aa:Pro,seq:tgg)
BASE COUNT          448 a          487 c          414 g          421 t
ORIGIN      
        1 atgacatgaa accggagcat tttgcatgga gttttcgttt tcacccaaac ttcttgttgt
       61 tgctgtcgcc gccgctcttc ctctcatggc cagcgcagca gataccccgt caactgccac
      121 cgcacgcaaa ggctttgccg gatacgatca cccaaaccag tatccacaga acgctgcaat
      181 ttattgaatt tgcacgatca tgtaggccgg ataaggcgtt tacgccgcat ccggcaatca
      241 accgcaggcg gccacaaaat ggccgctatt ttacttattc accaccagca aatgtgcctg
      301 cataatgtca ctggccgggc gaccgtgcgc cagcaaatca gccattgctt taagatatgg
      361 cggtagatgg cggaaataac gctgataccc ggcacacaaa taattcagcc ccggtttgcc
      421 gctggcatcg agcatgaagc ggtgtttcgg gcagcctccc cagcacgctt ttaacacgtt
      481 acaactgcga cactgcgccg gtaattgctt aaatttatct tcaccaaaca cctgctgttg
      541 cggggaatcg atcatttctg caattgtttg ctgatgcata ttccccagcc gatattgcgg
      601 ataaacatag tgatcgcagg cgtaaacgtc gccgttgtgc tcaacaatca ccgagcgccc
      661 acaggttggc tgatgatggc aaaccgcacc cggcgcaccg acaaaattgg caaacgccca
      721 ttcgatattc atcacgaaaa tcttgccgac gtcgcgtttg atccagtggt caaaaatcgc
      781 caccagaaat tcaccaaatt catcggggtg cacagaccat tccgtcagtt ccccctgaat
      841 atcaccaggc gcatgtagtt tcagtccatc gctggcagct gtttcatcag ccaggcgctc
      901 gaccaccgga ataaactgga tgaattcgac tcccgcatcg cacaaaaaat cataaacctg
      961 caacggttgc tgcgcgctgg tgcggttgac gcagaccagc acgttatagt cgacatgatg
     1021 tttttgcagc agcgtcaggg cacgcatcac cagcttatgc gttggtctgc cacctttggt
     1081 cacgcgatat tgattgtgga tctcagccgg accgtccagc gataacccaa caagaaaatg
     1141 attttctgcc agaaatgcac accatttatc atcgagcagc acgccgttag tctggaagct
     1201 gttacttatc ttcctgccag caccgtattt cgcctgtaac tttacggcac agcggtaaaa
     1261 atccagcccg agtaacgttg gttcgccgcc ctgccaggta aaagccactt cgttttgcgg
     1321 ttcgctggca gcgatatagt gacggacata cgcttccagc gtgtcatcgt ccatatgcgt
     1381 gactggcttt tcgcggtaaa gggattgttt ttcgagataa aaacagtagt cacagttcag
     1441 attacaatcg gaaccactcg gtttcgccat cacatgaaaa gcacgcgttg gaacctgttg
     1501 cagcatggtc actccttgcc tgaagtcatc cttcaatacg ttaagggcga aatcataccg
     1561 tggggcaatg agttattacg ggcgtttatt gcgaagggag ggtgacgaaa tgcacagaaa
     1621 acaaaaaacc ccgccgaagc ggggttcaaa attggtcggc gagagaggat tcgaacctcc
     1681 gacccactgg tcccaaacca gttgcgctac caagctgcgc tactcgccga aatactgctt
     1741 tttgaatttt tagttcaatt ctttaaagtc
//
LOCUS       DADMHM010000342         1756 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.347, whole genome shotgun sequence.
ACCESSION   DADMHM010000342 DADMHM010000000
VERSION     DADMHM010000342.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1756)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1756)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1756
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.347"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..273)
                     /locus_tag="JN125_004210"
     CDS             complement(<1..273)
                     /locus_tag="JN125_004210"
                     /inference="COORDINATES: protein motif:HMM:NF013927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873744.1"
                     /translation="MAGVAKQELTINWYYADVNGNIGYVHTGAYPDRQSGHDPRLPVP
                     GTGKWDWKGLLPFEMNPKVYNPLSGYIANWNNSPQKDYPASDLFAFL"
     gene            complement(261..1619)
                     /locus_tag="JN125_004211"
     CDS             complement(261..1619)
                     /locus_tag="JN125_004211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005031448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PbsX family transcriptional regulator"
                     /protein_id="HAY8873745.1"
                     /translation="MKNRNRMIVNCVTASLMYYWSLPALAEQSSSEIKIVRDEYGMPH
                     IYANDTWHLFYGYVVAQDRLFQMEMARRSTQGTVAEVLGKDFVKFDKDIRRNYWPDAI
                     RAQIDALSPEDMSILQGYADGMNAWIDKVNTNPETLLPKQFNTFGFTPKRWEPFDVAM
                     IFVGTMANRFSDSTSEIDNLALLTALKDKYGVSQGMAVFNQLKWLVNPSAPTTIAVQE
                     SSYPLKFNQQNSQTAALLPRYDLPAPMLDRPAKGADGALLALTAGKNRETIAAQFAQG
                     GANGLAGYPTTTNMWVIGKSKAQDAKAIMVNGPQFGWYAPAYTYGIGLHGAGYDVTGN
                     TPFAYPGLVFGHNGVISWGSTAGFGDDVDIFAERLSAEKPGYYLHNCKWVKMLSREET
                     ITVKNGQAETFTVWRTVHGNILQTDQTTQTAYAKSRAWDGKEVASLLAWTHQMKAKNW
                     QE"
BASE COUNT          461 a          428 c          375 g          492 t
ORIGIN      
        1 caaaaaggca aacagatccg aagcgggata atctttttgg ggagaattgt tccagttagc
       61 aatatatccc gacagggggt tatacacctt agggttcatt tcaaaaggca atagcccttt
      121 ccagtcccat tttcccgtac caggaacggg taatcgcgga tcatggcctg attgacgatc
      181 tggataagca ccagtatgaa cataaccaat attgccgttt acatcagcat agtaccagtt
      241 gatggtcagt tcttgtttcg ctactcctgc caatttttgg ccttcatctg atgagtccag
      301 gccagcaaag acgccacctc tttaccatcc catgcgcggg atttagcgta agccgtttgt
      361 gtcgtctggt cagtttggag aatgttgcca tgcaccgtac gccagacagt aaaggtctct
      421 gcctgaccat ttttcaccgt aatggtttcc tcacggctta acattttcac ccacttacaa
      481 ttatgtaagt agtagcctgg tttctctgcc gacagccgtt cagcaaaaat atcgacatca
      541 tcgccgaaac ctgccgttga tccccaggaa atcacaccat tatgaccaaa aaccagccca
      601 ggataggcaa atggtgtatt gccagtgaca tcataaccag caccgtgcag accaatacca
      661 taagtatacg caggcgcata ccagccaaac tgcggaccat ttaccatgat tgctttcgca
      721 tcctgggctt tgcttttgcc gatcacccac atattggtgg tcgttggata ccccgccaga
      781 ccattggcac caccctgtgc aaattgtgca gcaatagttt cccggttctt ccctgctgtt
      841 aacgccagca gtgcgccatc cgcccctttt gctggtcggt caagcattgg tgcaggtaaa
      901 tcgtagcgtg gcaacagagc tgctgtttgc gagttttgct gattaaattt aagtgggtag
      961 ctactctctt gtacggcaat agtggttggc gctgatgggt ttaccagcca tttcaactga
     1021 ttaaataccg ccatgccttg tgatacacca tatttatctt ttaaagccgt tagcagtgcc
     1081 agattatcaa tttcgctagt gctatcagag aagcggtttg ccatggtgcc cacaaatatc
     1141 atcgcgacat caaacggttc ccagcgctta ggagtaaagc caaatgtatt aaactgtttt
     1201 ggtaagagcg tctctggatt ggtatttacc ttatcaatcc aggcattcat tccatcagcg
     1261 tagccttgca gaatggacat atcctctggg gaaagggcat caatttgcgc ccggatagca
     1321 tccggccagt agttacgacg gatatcttta tcaaatttca caaaatcttt gccaagcact
     1381 tccgcgacag tcccttgagt actgcgacgt gccatttcca tctgaaaaag gcgatcttgt
     1441 gctactacat agccataaaa taggtgccat gtatcattgg cataaatatg cggcatgccg
     1501 tattcatcgc gaacaatctt tatctcactt gacgactgct cagccagtgc aggtaagctc
     1561 caataataca tcagggaagc agtaacacag ttcacgatca tacgatttct atttttcatt
     1621 gtatcctctg gcaggtgtat aattagcgaa ttgatactag caacgaagct tcggttatct
     1681 atttgcagag aattgtttca ttatgaactg tgagcgcgat aactaatttt tgatacaaaa
     1741 atttcattaa tgtgat
//
LOCUS       DADMHM010000343         1716 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.348, whole genome shotgun sequence.
ACCESSION   DADMHM010000343 DADMHM010000000
VERSION     DADMHM010000343.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1716)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1716)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1716
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.348"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(1..262)
                     /locus_tag="JN125_004212"
                     /pseudo
     CDS             complement(1..262)
                     /locus_tag="JN125_004212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611134.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(377..1015)
                     /locus_tag="JN125_004213"
     CDS             complement(377..1015)
                     /locus_tag="JN125_004213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873746.1"
                     /translation="MINGVSLQGTAGYEAHTEEGNVNVKKLLESLNSKSLGDMDKDSE
                     LAATLQKMINPSGGDGNCSGCALHACMAMLGYGVREAPVPNEISEYMTGFFHRHLEQI
                     DSEGIVSHPNETYSKFRERIAENILQNTSKGSVVMISIEQATHWIAGFNDGEKIMFLD
                     VQTGKGFNLYDPVEKSPDAFVDENSSVQVIHVSDQEFDHYANSSSWKSKRLC"
     gene            complement(1174..1671)
                     /locus_tag="JN125_004214"
                     /pseudo
     CDS             complement(1174..1671)
                     /locus_tag="JN125_004214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_086558264.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
BASE COUNT          484 a          423 c          324 g          485 t
ORIGIN      
        1 gcaagcgctg taactctttt atttgtttta tagcggcagc cagttctgag gcaggaacga
       61 catcctctcc ggcagcaaca gcagtgagac ttccttccag atattatttt ttccacttaa
      121 gcaacaggct gggctgaata ccatgcaaac gcgccacatg ggacaccgtc atgctaggct
      181 ccattgtctg ctgaataatg gcaatttttt cctgaggagt tttacgttta cgaagctcca
      241 gccccagcaa agttccagtc atctcaaaat tagaactagt gttagacata tatccaagcc
      301 tatctcttat tttaagatac atccactgtc tggcgtttca aggggccggc tcaaatctat
      361 gtacaggctc tcagcatcag caaagcctct tactcttcca actactactg ttagcatagt
      421 gatcaaattc ctgatcagat acatgaatta cctgaaccga actattttca tctacaaatg
      481 catctggcga tttttctaca ggatcataaa gattaaatcc ctttcctgtt tgaacatcca
      541 aaaacataat tttttcacca tcgttaaatc cagctatcca atgagtggcc tgttcaatag
      601 aaatcattac tacacttcct tttgaagtgt tttgtaaaat attttctgca atacgctcac
      661 gaaatttact ataagtttca ttaggatgtg acactatgcc ttcactatca atttgctcta
      721 aatgcctatg aaaaaatccg gtcatatact ctgatatttc attaggtacg ggagcctctc
      781 ttactccata ccctaacata gccatacaag catgaagcgc acaccctgaa cagttaccat
      841 ccccaccaga cggatttatc attttctgta aagtcgctgc caattcagaa tctttatcca
      901 tatcaccaag acttttagag tttaaagatt ccagcaattt tttaacattt acatttccct
      961 cctctgtatg tgcctcatat ccagcagttc cctgtaacga caccccatta atcatattgt
     1021 atcctgacag tatatatact cactatattt tcttcataac aaatatccct ctgatatgac
     1081 aacaaaaaac ggagccggat tcctgttttt gtgaactgca gctattcgag tctaaaaagt
     1141 gatccactta ccaccaacgg cctaatatat acagaacgga gtaaacaggg ctaacagttc
     1201 ccgataggtc tcatcattcc gtggcccgaa agtgtaagcc aacacaccgc cagttttagt
     1261 gttgtacgca taccagagcc agtgttgttg cagccttgct gccgacgaag cgccactgct
     1321 catcaagttc acagataagg gcaacatcag cgtgagcgac tggcgcagat gttatccgcc
     1381 ggggcgggag ctttttaatg tccgtatgac ggtattgatg ccgattttca gtgtcctggc
     1441 agtatcacgg ccccctgcgc cgttatgtgc catttcaacg atctgctcct taacgccggg
     1501 ttttctggct tcataagagt aagtgagctg gaaaacacgt ttacatgagc gacaacggaa
     1561 acgctcatgc cgggaacaac tacggccatg tcgataaact tcatcggaat gacagcgcgg
     1621 acaatgaaca gtaacggtgt aagcgccccg agaagtacgt agcgtaagga ttattttaca
     1681 gacgagaagt tccagggcag cagttcatgc acttgg
//
LOCUS       DADMHM010000344         1703 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.349, whole genome shotgun sequence.
ACCESSION   DADMHM010000344 DADMHM010000000
VERSION     DADMHM010000344.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1703)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1703)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1703
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.349"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(106..432)
                     /locus_tag="JN125_004215"
                     /pseudo
     CDS             complement(106..432)
                     /locus_tag="JN125_004215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009518821.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1140..1601)
                     /locus_tag="JN125_004216"
     CDS             complement(1140..1601)
                     /locus_tag="JN125_004216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HAY8873747.1"
                     /translation="MKACLLLFFYFSLIGQLHGADVKIKENESVMGSTAMTYDLSEEK
                     LMKLKYKSQHGDSEASFRLYQYYCFTKNNIDKQLRFLERSASQGNVTAQFNYGVFLSD
                     TNPTLSEYYNLNRAIYWMEFAVNNGNIDAKSKLQELKKLKRMDRRKNKENP"
BASE COUNT          507 a          339 c          267 g          590 t
ORIGIN      
        1 atcgatgcat tttatagaat catcaatggc cataatagta ctattaactc tcaattttat
       61 atttttatca tcactacaaa tattaactga atttatatca atgatttttt tattcttatc
      121 ttttatttta tttactgttt caatgcaatc agcggcaagt tggagtggat ttagattttt
      181 cagatatggt cttatgatct ttcccttact taataaatag catgtatagg attcggaaag
      241 tccagcatct attttgtacc tcattatatt agataaggat gtgagaaatt ccttgttatc
      301 attcgcagcc atatatgcca gtccgagttc agcctctgcg gccttacagg caaaatagct
      361 tagtgaacac gcttttcgtc cctctttagt actggctgat attagtgccc ataatattgc
      421 tttgtctgcc aaatctaact ctctctgaaa ttttcttgca gtaactgcac tcgcagaaat
      481 agagaaaaaa atacaattgt taataacctt gccatatttt tttagtccgt aactgttaat
      541 gtgctatctg gctctgaaaa tattaactca tttaattttt gcatgtcatt agataaacca
      601 gttatacaac cctcggaaca gaatcgaggt cctaaagacg gaccaaaagt gtttaaacaa
      661 ctatgtattg aaaatccatt gcgattataa gttcctgtat taactgacgg tactaatcgt
      721 atgccgtcag gttttctatt gcttgctccc gggtcattaa cattccaact ccataggcct
      781 tgaggtattg gccatctatt tataaatgtg tacaacgggg attattttta tattgcatat
      841 tattaccaga agcgactgga atactaagca catcataaaa attatcatca catggtatat
      901 ctgaaacaca cgaaagcata cctaaagtta ggttgtataa acaggtggct aatcccaagg
      961 ggatcgattc cagaaatcgg gttcaacgga tactgataaa aattccacct accttccagc
     1021 ccaatcggag cctgagtgtt ataccgcccc tgctgcggtt aatgttaccg ataatagtta
     1081 tagtacagcc ctgattcatc atcatactac tgctgcggca gtctgatgaa ctattgcttt
     1141 tacggattct ccttattctt ccttctatcc attcgcttta gctttttgag ctcttgaagt
     1201 ttgctctttg catcaatatt accgttattt acagcgaatt ccatccaata aatagctcta
     1261 ttcaaattat aatattctga taatgttgga tttgtatctg ataaaaagac cccataatta
     1321 aactgcgctg taacattccc ctgagatgct gatctttcca agaatcgcaa ttgtttatca
     1381 atattatttt tagtaaagca gtaatattga tatagtcgaa atgatgcctc tgaatcacca
     1441 tgttgtgatt tatacttcag tttcatcagc ttttcttcac ttaaatcata ggtcattgct
     1501 gtagatccca tcacactttc gttttctttt attttcacat cagcaccatg caattgacca
     1561 ataagagaaa aataaaaaaa tagtaacaag catgctttca tacatctaca acctatctta
     1621 tatcactggg tttttctggc gtaccttgca tattagaaat ggggtgccca gatggcccat
     1681 atgttatcca attaccaagg tct
//
LOCUS       DADMHM010000345         1701 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.350, whole genome shotgun sequence.
ACCESSION   DADMHM010000345 DADMHM010000000
VERSION     DADMHM010000345.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1701)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1701)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1701
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.350"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..1163
                     /gene="bcsE"
                     /locus_tag="JN125_004217"
     CDS             <1..1163
                     /gene="bcsE"
                     /locus_tag="JN125_004217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsE"
                     /protein_id="HAY8873748.1"
                     /translation="SRLNHCSLLVINPGNNNDKQFSLLLEEYRSLFGLASLRFQGDQH
                     LLDIAFWCNEKGVSARQQLSVQQQNGIWTLVQSEEAEIQPRSDEKRILSNVAVLEGAP
                     PLSEHWQLFNNNEVLFNEARTAQAATVVFSLQQNAQIEPLARSIHTLRRQRGSAMKIL
                     VRENTASLRATDERLLLACGANMVIPWNAPLSRCLTMIESVQGQKFSRYVPEDITTLL
                     SMTQPLKLRGFQKWDVFCNAVNNMMNNPLLPAHGKGVLVALRPVPGIRVEQALTLCRP
                     NRTGDIMTIGGNRLVLFLSFCRINDLDTALNHIFPLPTGDIFSNRMVWFEDDQISAEL
                     VQMRLLAPEQWGMPLPLTQSSKPVINAEHDGRHWRRIPEPMRLLDDAVERSS"
     gene            1160..1351
                     /gene="bcsF"
                     /locus_tag="JN125_004218"
     CDS             1160..1351
                     /gene="bcsF"
                     /locus_tag="JN125_004218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417994.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsF"
                     /protein_id="HAY8873749.1"
                     /translation="MMTISDIIEIIVVCALIFFPLGYLARHSLRRIRDTLRLFFAKPR
                     YVKPAGTLRRTEKARATKK"
     gene            1348..>1701
                     /gene="bcsG"
                     /locus_tag="JN125_004219"
     CDS             1348..>1701
                     /gene="bcsG"
                     /locus_tag="JN125_004219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis protein BcsG"
                     /protein_id="HAY8873750.1"
                     /translation="MTQFTQNTAMPSSLWQYWRGLSGWNFYFLVKFGLLWAGYLNFHP
                     LLNLVFAAFLLMPIPRYSLHRLRHWIALPIGFALFWHDTWLPGPESIMSQGSQVAGFS
                     TDYLIDLVTRFINWQM"
BASE COUNT          383 a          443 c          426 g          449 t
ORIGIN      
        1 ggagcaggtt aaaccattgt tcgcttttgg taattaatcc cggaaataat aacgataaac
       61 aattttcatt gttgcttgag gaataccgtt cactttttgg tcttgccagt ttgcgttttc
      121 agggtgacca acatttgctg gatattgcct tctggtgcaa cgaaaaaggg gtcagcgccc
      181 gtcagcagct tagcgttcag caacaaaatg gtatctggac attagttcaa agcgaagagg
      241 cggagatcca accacgcagc gacgaaaaac gcattctgag taatgttgct gtactggaag
      301 gtgcgccgcc gctatcggaa cactggcaac tgttcaacaa taacgaagtc ctgttcaatg
      361 aagcccgtac cgctcaggcg gcgacggtgg tcttttcttt acagcaaaat gcgcaaatcg
      421 agccactggc ccgcagcatt cataccctgc gtcgccagcg cggtagtgcg atgaaaatcc
      481 tcgtgcggga aaataccgct agcctgcgcg ccaccgatga acgtttgtta ttggcctgcg
      541 gtgcaaatat ggttattccg tggaatgcgc cactctcccg ttgtctgacg atgatcgaaa
      601 gcgtgcaagg gcagaagttt agtcgctatg tgccggaaga tatcactacc ttgctgtcaa
      661 tgacccagcc gctcaaactg cgtggtttcc agaagtggga tgtgttctgt aatgccgtca
      721 acaacatgat gaataaccct ctattacctg cccacggtaa aggcgttctg gttgccctac
      781 gtccggtacc gggtatccgc gttgaacaag ccctgacgct gtgtcgccct aaccgtaccg
      841 gcgatatcat gaccattggc ggtaatcggc tggtgctgtt tctctcattc tgtcggatta
      901 acgatctgga taccgcgttg aatcatattt tcccattgcc tactggcgac attttctcaa
      961 accgtatggt ctggtttgaa gatgatcaaa tcagtgccga gctggtgcag atgcgcctgc
     1021 ttgccccaga acaatggggc atgccgctgc ctttaacgca aagttctaaa ccggtcatca
     1081 atgccgagca cgatggtcgc cactggcgac gaataccaga acccatgcga ctgttagatg
     1141 atgctgtgga gcgctcatca tgatgaccat cagcgatatc attgaaatta ttgtcgtttg
     1201 cgcactgata tttttcccgc tgggctatct ggcgcggcac tctttgcgac gcattcgcga
     1261 caccttacgt ttgttctttg ctaaacctcg ttatgttaaa ccggccggga cattacgccg
     1321 cacggaaaaa gccagggcaa ccaaaaaatg actcaattta cgcaaaatac cgccatgcct
     1381 tcttccctct ggcaatactg gcgcggcctt tccggctgga acttctattt tctggttaag
     1441 ttcggcctgt tgtgggcggg atatcttaac ttccatccgc tcctcaattt ggtgtttgcc
     1501 gcgtttctgc tgatgcccat tccgcgctac agcctgcatc gcttgcgcca ctggattgcc
     1561 ctgccgatcg gctttgcttt gttctggcat gacacctggt tgcctggccc ggaaagcata
     1621 atgagccagg gttcgcaggt ggcggggttc agtaccgatt atttaatcga ccttgtcaca
     1681 cgctttatta actggcagat g
//
LOCUS       DADMHM010000346         1685 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.351, whole genome shotgun sequence.
ACCESSION   DADMHM010000346 DADMHM010000000
VERSION     DADMHM010000346.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1685)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1685)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1685
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.351"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            131..1669
                     /locus_tag="JN125_004220"
     CDS             131..1669
                     /locus_tag="JN125_004220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000099160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66-like element ISEc22 family transposase"
                     /protein_id="HAY8873751.1"
                     /translation="MSSSLPDDINALKRLLAEQEALNRALLEKLNEREREIDHLQAQL
                     DKLRRMNFGSRSEKVSRRIAQMEADLKALQKESDTLTGRVDDPAVQRPLRQTRTRKPF
                     PESLPRDEKRLLPAASCCPECGGSLSYLGEDAAEQLELMRSVFRVIRTVREKHACTQC
                     DAIVQAPAPSRPIERGIAGPGLLARVLISKYAEHTPLYRQSEMYGRQGVELSRSLLSG
                     WVDACCRLLSPLEEALQDYVLTDGKLHADDTPVPVLLPGNKKTKTGRLWTYVRDDRNA
                     GSTLAPAVWFAYSPDRKGIHPQTHLAGFSGVLQADAYAGFNELYRDGRITEAACWAHA
                     RRKIHDVHVRTPSALTEEALKRIGELYAIEAEIRGMTAEQRLAERQLKTKPLLKSLES
                     WLREKMKTLSRHSELAKAFAYALNQWPALTYYADDGWAEADNNIAENALRMVSLGRKN
                     YLFFGSDHGGERGALLYSLIGTCKLNGVEPESYLRYVLDVIADWPINRVGELLPWRVA
                     LPTE"
BASE COUNT          380 a          484 c          510 g          311 t
ORIGIN      
        1 accggcacag ctggcgatgc tccttgaagg tatcgactgg cggcagccta aaagactgct
       61 tacgtccctg actatgttgt aagcctcttt atcctggtcg acgctgaatg agcctggtaa
      121 tatacccggt atgagcagct cacttcctga cgatatcaat gcactgaaac gtctccttgc
      181 cgaacaggag gcgctgaacc gtgccctgct ggaaaagctg aacgagcgtg aacgcgaaat
      241 agaccatctg caggcacagc tggataagct gcgccggatg aacttcggca gccgctccga
      301 aaaagtctcc cgtcgtatcg cacagatgga agctgacctg aaggcacttc agaaagaaag
      361 tgataccctt accggtcggg ttgacgaccc ggccgtgcag cgcccgctgc gtcaaacccg
      421 cacccgcaaa ccgttccccg aatcactccc ccgcgatgaa aaacggctgc tgccggcagc
      481 gtcatgctgc ccggaatgtg gaggctcact gagctatctg ggtgaggatg ccgccgaaca
      541 gctggagttg atgcgcagcg tcttccgggt tatccggact gtacgtgaaa agcatgcctg
      601 tactcagtgc gatgccatcg tgcaggcccc cgcgccttca cggcccatcg agcggggtat
      661 cgcaggaccg gggctgctgg cccgcgtgct gatctcaaag tatgcagagc acaccccgct
      721 gtaccgccag tctgaaatgt acggccgcca gggcgtggag ctgagtcgtt cactgctgtc
      781 gggctgggtg gatgcatgct gccggctact gtcaccgctg gaagaagcgc ttcaggacta
      841 tgtgctgact gacggtaagc tccatgctga tgacacgcct gtcccggtgc tgttgccagg
      901 caataagaaa acgaagaccg ggcggttatg gacctacgtt cgtgacgacc gtaacgccgg
      961 gtcaacgctg gcgccggcgg tgtggttcgc ttacagcccg gacagaaaag gcatccatcc
     1021 gcagacccat cttgcggggt tcagtggtgt actgcaggcg gatgcatacg ccgggttcaa
     1081 cgagctgtac cgggatggcc ggataacgga agccgcctgt tgggctcacg cccgccgtaa
     1141 aatccacgat gtgcacgttc gcaccccgtc agccctgacg gaggaagcgc tgaaacggat
     1201 cggcgaactg tacgccatcg aggcagagat aaggggaatg acggcggagc agcgccttgc
     1261 cgaacgtcag ttgaaaacga aaccgctgct gaaatccctg gaaagctggc tgcgtgaaaa
     1321 gatgaaaacc ctgtcgcgac actcagaact ggcgaaagcg ttcgcatacg ccctgaacca
     1381 gtggccggcg ctgacgtact atgcagatga tggctgggct gaggcggaca ataacatcgc
     1441 tgaaaatgcg ttgcggatgg tcagtctggg ccgcaaaaac tacctgttct tcggttcgga
     1501 tcatggagga gagcggggag cgctgctgta cagcctgatc gggacgtgca aactgaacgg
     1561 agtggagcca gaaagctacc tccgctatgt ccttgacgtc atagccgact ggccgataaa
     1621 ccgggtcggc gaactgctcc cctggcgcgt agcactgccg actgaataac acatccccgt
     1681 caata
//
LOCUS       DADMHM010000347         1661 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.352, whole genome shotgun sequence.
ACCESSION   DADMHM010000347 DADMHM010000000
VERSION     DADMHM010000347.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1661)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1661)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1661
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.352"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(286..>1661)
                     /locus_tag="JN125_004221"
     CDS             complement(286..>1661)
                     /locus_tag="JN125_004221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HAY8873752.1"
                     /translation="RIEQGLYRHGDKLPSVRSLSQEHGVSISTVQQAYQTLETMKLIT
                     PQPRSGYFVAQRKAQPPVPPMTRPVQRPVEITQWDQVLDMLEAHSDNSIVPLSKSTPD
                     VETPSLKPLWRELSRVVQHNLQTVLGYDLLAGQRVLREQIARQMLDSGSVVTADDIII
                     TSGCHNSMSLALMAVCKPGDIVAVESPCYYGSMQMLRGMGVKVIEIPTDPETGISVEA
                     LELALEQWPIKGIILVPNCNNPLGFIMPDARKRAVLSLAQRHDIVIFEDDVYGELATE
                     YPRPRTIHSWDIDGRVLLCSSFSKSIAPGLRVGWVAPGRYHDKLMHMKYAISSFNVPS
                     TQMAAATFVLEGHYHRHIRRMRQTYQRNLALYTCWIREYFPYEICITRPKGGFLLWIE
                     LPEQVDMVCVARQLYRMKIQVAAGSIFSASGKYRNCLRINCALPLSETYREALKQIGD
                     AVYRAME"
BASE COUNT          396 a          463 c          422 g          380 t
ORIGIN      
        1 gcccttgcct gaaagcaagc gcgaaccatg gatcgagtac taatcagagg ctgatgacaa
       61 acgcaaagca gcctgatgcg ctacgcttat caggtctaca taatccatta aatatattga
      121 acttttaata ttttgtagac ctggtaaggc gttcacatgg catctggcat gaacgaagca
      181 cactttgcct aagccatgcc ggaacgtggc gatgtcgcta taaagataaa acgagtcaca
      241 ggttattcgt gagagtaaat caggggcctc ggcactaatt cgaatttatt ccattgcccg
      301 atacacggca tcgccaattt gctttagtgc ttcgcgatag gtttcgctga gcggcaaagc
      361 gcagttgatg cgcagacaat tacggtattt gccggaagcc gagaaaatcg agcctgccgc
      421 cacctggatt ttcatgcggt acagctgccg cgcgacgcag accatatcga cctgttcagg
      481 caattcgatc cacagtaaaa atccgccttt cgggcgcgta atacagattt cgtagggaaa
      541 atattcccgt atccagcagg tataaagcgc cagattgcgc tgataagtct gccgcatccg
      601 ccggatatgg cgatgatagt ggccttccaa cacaaacgtt gccgccgcca tttgcgtgga
      661 cggcacatta aagctgctga tggcgtattt catatgcatc agtttatcgt gataacgccc
      721 cggtgcgacc caacccacgc gcaggcctgg agcaatactt ttactgaacg agctgcacaa
      781 cagcactcgc ccgtcgatat cccatgaatg gatggtccgc gggcgcggat actccgttgc
      841 cagttcgccg tagacatcat cttcaaaaat cacaatatca tgacgctgag cgagagagag
      901 aacggcccgt ttgcgtgcgt ccggcataat aaatcccagc ggattattac agtttggcac
      961 cagaatgatg cctttaatcg gccactgttc cagcgccagt tccagtgctt caacgctgat
     1021 gccagtttct ggatcggttg ggatttcaat cactttcacg cccatgcctc gcagcatctg
     1081 catcgaaccg taataacagg gagattcgac cgcgacaata tcgcccggtt tacacaccgc
     1141 cattaacgcc agcgacatcg agttatggca gccgctggtg atgatgatgt catcggcggt
     1201 gaccaccgag ccgctgtcga gcatctggcg ggcaatctgc tcccgcaaca ctcgctgacc
     1261 ggctaacaag tcataaccga gcacggtttg tagattatgc tgcaccaccc ggcttagctc
     1321 acgccagagt ggtttcaggc tgggcgtttc gacatccggc gtgcttttgc ttaacggaac
     1381 aatggaattg tcgctatgcg cctccagcat atccagcacc tgatcccact gggtaatttc
     1441 caccgggcgc tgcaccggac gcgtcatcgg cggtacaggc ggctgggctt tacgttgtgc
     1501 gacaaaataa cccgaacgcg gctgcggagt gatgagcttc atcgtctcca gcgtctggta
     1561 cgcctgctgc acggtgctga tgctgacgcc gtgctcctga cttaagctgc gcaccgacgg
     1621 caatttatcc ccgtgacgat acagcccttg ctcaatccgc t
//
LOCUS       DADMHM010000348         1554 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.353, whole genome shotgun sequence.
ACCESSION   DADMHM010000348 DADMHM010000000
VERSION     DADMHM010000348.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1554)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1554)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1554
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.353"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            262..1236
                     /gene="hemB"
                     /locus_tag="JN125_004222"
     CDS             262..1236
                     /gene="hemB"
                     /locus_tag="JN125_004222"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308450.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HAY8873753.1"
                     /translation="MTDLIQRPRRLRKSPALRAMFEETTLSLNDLVLPIFVEEEIDDY
                     KAVEAMPGVMRIPEKHLAREIERIANAGIRSVMTFGISHHTDETGSDAWREDGLVARM
                     SRICKQTVPEMIVMSDTCFCEYTSHGHCGVLCEHGVDNDATLENLGKQAVVAAAAGAD
                     FIAPSAAMDGQVQAIRQALDAAGFKDTAIMSYSTKFASSFYGPFREAAGSALKGDRKS
                     YQMNPMNRREAIRESLLDEAQGADCLMVKPAGAYLDIVRELRERTELPIGAYQVSGEY
                     AMIKFAALAGAIDEEKVVLESLGSIKRAGADLIFSYFALDLAEKKILR"
     gene            complement(1342..>1554)
                     /gene="tauD"
                     /locus_tag="JN125_004223"
     CDS             complement(1342..>1554)
                     /gene="tauD"
                     /locus_tag="JN125_004223"
                     /EC_number="1.14.11.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308449.1"
                     /note="catalyzes the conversion of taurine
                     (2-aminoethanesulfonate) to sulfite and aminoacetaldehyde
                     concurrently with the conversion of alpha-ketoglutarate to
                     succinate and carbon dioxide; non-heme iron oxidase;
                     allows the use of taurine as an alternative sulfur source;
                     forms homodimers; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="taurine dioxygenase"
                     /protein_id="HAY8873754.1"
                     /translation="SEKESEALLGFLFAHITKPEFQVRWRWQPNDIAIWDNRVTQHYA
                     NADYLPQRRIMHRVTILGDKPFYRAG"
BASE COUNT          396 a          402 c          382 g          374 t
ORIGIN      
        1 tatcttatca atatacaaca aagtttgaat tattcaattt atagcagcac aaccaaacgc
       61 caaaaaaaat aataaccaag agctataaat aaagattaaa aatattttca gtgaatatga
      121 acttattgct atttctatta caaagatgtc ctggtctctc tttcattctc ttcttgtcaa
      181 catcacgaca actttcgtaa aacactcctg ccccgcttca ggtatactgt gcaccttaat
      241 tccacaaaca tcaggcagac catgacagac ttaatccaac gccctcgtcg cctgcgcaaa
      301 tctcctgcgc tgcgcgctat gtttgaagag acaacactta gccttaacga cctggtgttg
      361 ccgatctttg ttgaagaaga aattgacgac tacaaagccg ttgaagccat gccaggcgtg
      421 atgcgcattc cagagaaaca tctggcacgc gaaattgaac gcatcgccaa cgccggtatt
      481 cgttccgtga tgactttcgg catctctcac cataccgatg aaaccggcag cgacgcctgg
      541 cgggaagatg gactggtggc gcgtatgtcg cgcatctgca agcagactgt gccagaaatg
      601 atcgtcatgt cagacacttg tttctgtgaa tacacttctc acggtcactg cggtgtgctg
      661 tgcgagcatg gcgtcgacaa cgacgcgact ctggaaaatt taggcaagca agccgtggtt
      721 gcagctgctg caggcgcaga cttcatcgcc ccttccgccg cgatggacgg ccaggtacag
      781 gcgattcgtc aggcgctgga cgctgcaggc tttaaagata cggcgattat gtcgtattcg
      841 accaagttcg cctcttcctt ttatggcccg ttccgtgaag ctgccggaag cgcattaaaa
      901 ggcgaccgca aaagctatca gatgaaccca atgaaccgtc gcgaggcgat tcgtgagtca
      961 ctgctggatg aagcccaggg cgcagactgc ctgatggtta aacctgctgg agcgtacctc
     1021 gacatcgtgc gtgagctgcg tgaacgtact gaattgccga ttggcgcgta tcaggtgagc
     1081 ggtgagtacg cgatgattaa gttcgccgcg ctggcgggtg ctatagatga agagaaagtc
     1141 gtgctcgaaa gcttaggttc aattaagcgt gcgggtgcgg atctgatttt cagctacttt
     1201 gcgctggatt tggctgagaa gaagattctg cgttaatttt tttcctctca gaaaggggga
     1261 gttaacctgt tgaaagtacg gtgaacgccc cctcacccta accctctccc caagggggcg
     1321 agggaaccgt ccgcactcgt atcaccccgc ccgataaaac ggtttatccc caagaatcgt
     1381 cacccgatgc ataatccgcc gctgtggcag gtaatcggca ttggcatagt gctgagtcac
     1441 gcggttatcc caaatcgcaa tatcattcgg ttgccagcgc caacgcacct gaaactccgg
     1501 tttagtgata tgggcgaata aaaagcctaa caaggcttcg ctctctttct cgct
//
LOCUS       DADMHM010000349         1522 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.355, whole genome shotgun sequence.
ACCESSION   DADMHM010000349 DADMHM010000000
VERSION     DADMHM010000349.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1522)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1522)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1522
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.355"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            7..1522
                     /locus_tag="JN125_004224"
                     /pseudo
     CDS             7..1522
                     /locus_tag="JN125_004224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415051.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA synthetase FdrA"
BASE COUNT          337 a          399 c          450 g          336 t
ORIGIN      
        1 gttgttatga tccacgcctt tattaaaaaa gggtgttttc aggattcggt cagtttaatg
       61 attatttcac gaaaactcag cgaatcagaa aatgttgatg atgtttccgt aatgatgggt
      121 acgcccgcca ataaagcgtt attagatacc acaggtttct ggcatgacga ttttaataac
      181 gccacgccga acgatatttg cgtggcaatt cgtagcgaag cggcggatgc ggggatcgcg
      241 caggcgatta tgcagcagct tgaagaggcg ctaaaacaac tggcgcaggg ggcaggcagc
      301 agccagtcct tgacgcaggt gcgtcgctgg gacagtgcct gtcagaaatt atccgatgcc
      361 aatctggcgc tgatttcagt ggctggcgag tatgcggcgg agctggcgaa tcaggcgctg
      421 gatcgcaacc tcaacgtgat gatgttctcc gataacgtca cgctggaaga tgaaatccaa
      481 cttaaaaccc gcgcgcgaga aaaaggcttg ctggtgatgg ggccggactg cggtacgtcg
      541 atgattgccg gcacgccgct ggcttttgct aacgtgatgc cggaaggcaa cattggcgtc
      601 attggcgctt ccggtaccgg gattcaggaa ctgtgttcgc agattgcgca ggcaggggag
      661 ggaattactc acgcgattgg tcttggcgag cgcgacctca gccgtgaagt aggcggcatc
      721 agtgcgctga cggcgctgga aatgctcagt gcagacgaga aaagcgaagt gctggcattt
      781 gtttcaaagc cacctgccga agctgtgcgt ctgaaaattg ttaatgccat gaaagcaacc
      841 ggcaaaccga cggtggcgct gtttttaggt tataccccgg cggtggcccg cgacgagaat
      901 gtctggtttg cctcctcgct ggatgaggcc gcacgcctgg cttgcctgct ttcacgcgtc
      961 acggcgcgac gtaacgcaat agcgcctgtc agcagcggat ttatttgcgg tttgtatacc
     1021 agcggtacgc tggctgccga agcggcggga ttacttgctg gacaccttgg cgtggaagcc
     1081 gacgataccc atcatcacgg catgatgctc gacgccgatg gtcaccagat tattgacctc
     1141 ggcgatgatt tctacaccgt cgggcgtccc catccgatga tcgacccagc cttacgcaac
     1201 cagttaattg ccgatctcgg cgctaaacca caagtgcgcg tattgctact tgatgtcgtg
     1261 attggcttcg gtgcgactgc cgatcctgcc gcctcgctgg taagcgccta gcaaaaagcc
     1321 tgtgccgcgc gttcagataa tcaaccactg tatgccattg ccacggtgac aggcactgaa
     1381 cgtgacccgc aatgccgctc gcagcaaatc gccacgctgg aagatgcggg gatcgcggta
     1441 gtgagttcgc tgccggaagc caccttgctg gcggcagcgt taatttatcc gctctcgcct
     1501 gccgcacagc aacatacacc gt
//
LOCUS       DADMHM010000350         1499 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.356, whole genome shotgun sequence.
ACCESSION   DADMHM010000350 DADMHM010000000
VERSION     DADMHM010000350.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1499)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1499)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1499
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.356"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            215..1159
                     /locus_tag="JN125_004225"
     CDS             215..1159
                     /locus_tag="JN125_004225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000628767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF551 domain-containing protein"
                     /protein_id="HAY8873755.1"
                     /translation="MITITKGRLLTIKQWRETYGPGSNVVLPAEEAEELARIALASLE
                     ADPVKRVNSDQMHRVCLEANRYLDKYDAMAKEVNKLLGRIAPPAPVFNGEYGDAYQGA
                     REDLSIWKRRALEADEHVRRLEQINDHMVKEAQGESRMGEPVIREPAPVVPEEATPEN
                     VEMLSGYVSTYKLTDSERDIAAEIWNACRAAMLQSGNFRENKNSSTNNFREIAETSTN
                     YPAIPSEVLSAILKVARIRADFDDFDGDRRGIGDCLDEAEQELIVTINKYASQLAAEP
                     IAPNDVREQTAIPQVPVTPDGWISCSERMPDDRQEVNQ"
     gene            1244..1486
                     /locus_tag="JN125_004226"
     CDS             1244..1486
                     /locus_tag="JN125_004226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4222 domain-containing protein"
                     /protein_id="HAY8873756.1"
                     /translation="MFALIQRGQIYTDRAGYPVVITRITEHSVFFRRMDGRSGRVRIG
                     ELNCLFEHIDHQEYRKILADTEQEKHLKKLRAIKRK"
BASE COUNT          434 a          319 c          418 g          328 t
ORIGIN      
        1 gattacttca cgttgttaac ggaagagtac ggaaagtaca tggatggccc aggggtaatt
       61 gctgttgggg taatcctgac gataagccat ttaccgggaa taagcaggtt gaatgcgatt
      121 acatgttatc tgcattaagg cgcatggagt tgagagggca ccttaatgaa atatatgacg
      181 gtgtgattgt taataagaaa gaaggaaacg cggcatgatc actattacca aagggcgact
      241 gctgacaatc aagcagtggc gcgaaacata cggaccgggt agcaacgttg tactgccagc
      301 agaagaagcg gaagaactgg cacggattgc actggcatca ttggaagcag atccagttaa
      361 acgagttaac tcagatcaga tgcaccgagt ctgcttagaa gctaatcgct atttagataa
      421 atatgacgcg atggcgaaag aggtaaataa gttgcttgga cgcatcgccc cgccagcgcc
      481 agtatttaac ggcgaatacg gtgacgcata tcagggcgct cgtgaagacc tgtccatctg
      541 gaaacggcga gcgcttgaag ctgatgagca cgttcggcga ctggagcaaa tcaatgacca
      601 catggtgaaa gaggcgcagg gagaatcacg catgggcgag cctgtaatac gtgagccagc
      661 accggtagtg cctgaagaag caactccgga aaacgtagaa atgctctctg gctatgtttc
      721 aacgtacaaa ttaaccgata gcgagcgcga tattgctgcc gaaatatgga acgcctgccg
      781 cgccgccatg cttcagtccg gaaactttcg ggaaaacaag aattcgtcaa ccaataattt
      841 tcgggaaatc gcggaaacgt caaccaacta tccggcaatt cctagtgagg tgttgtccgc
      901 aatcctgaag gttgccagga ttcgtgccga tttcgatgat tttgacggtg acaggcgagg
      961 tatcggtgat tgtctggatg aggctgagca agagcttatc gttaccatta acaaatatgc
     1021 cagtcagttg gcagcagaac ctatagcgcc taatgacgtt cgagagcaga cagccattcc
     1081 acaagttccg gtaactccgg atggttggat aagctgtagt gagcgaatgc cggacgacag
     1141 gcaggaggtg aatcaatgag ctggcctgat gcaatcgtaa ctctgggggt ggtattcgca
     1201 gcagcgtttg ttgtgttctc gatttgtcga tgggaataac cacatgttcg ctttgattca
     1261 acgcggtcag atatacacgg acagagctgg ataccccgtg gtgattactc gcatcactga
     1321 gcactcagtg ttctttcgac ggatggacgg acgatccggg cgggtacgca ttggtgagtt
     1381 aaactgcctg ttcgaacata ttgaccacca ggagtaccgc aaaattctcg cggacactga
     1441 gcaggaaaag cacctgaaaa aattacgagc cataaaaagg aagtaaagaa tgaataaag
//
LOCUS       DADMHM010000351         1496 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.357, whole genome shotgun sequence.
ACCESSION   DADMHM010000351 DADMHM010000000
VERSION     DADMHM010000351.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1496)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1496)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1496
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.357"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            93..565
                     /locus_tag="JN125_004227"
                     /pseudo
     CDS             93..565
                     /locus_tag="JN125_004227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000489016.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
     gene            complement(611..687)
                     /locus_tag="JN125_004228"
     tRNA            complement(611..687)
                     /locus_tag="JN125_004228"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(651..653),aa:Arg,seq:tct)
     gene            930..>1496
                     /gene="fimZ"
                     /locus_tag="JN125_004229"
     CDS             930..>1496
                     /gene="fimZ"
                     /locus_tag="JN125_004229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria biosynthesis transcriptional regulator
                     FimZ"
                     /protein_id="HAY8873757.1"
                     /translation="MKPTSVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDY
                     LRTRPVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKVLFLSSKSECFYAGRAIQAGANG
                     FVSKCNDQNDIFHAVQMILSGYTFFPSETLNYIKSNKCSTNSSTVTVLSNREVTILRY
                     LVSGLSNKEIADKLLLSNKTVSAHKSNIY"
BASE COUNT          438 a          329 c          320 g          409 t
ORIGIN      
        1 atctgttgtt tttaaataag aacttaacct gtgtaaagcc ctggtcgcgg ctggcaaccc
       61 cggttatcac ttgtcatagc cgtacaccgg aagtgttccg gctagccgcc aaccacagca
      121 agcagcaacc cagcaaaccc tgcgaagcgg agttgacgcg cgcattactt tttaccgtat
      181 tgtctaactt tcttgagcaa tcgcggttta ttgccctact gatgtatatc ttacgcagca
      241 gcgtccgcga cagcgtctgc cgcattattc aaagcgatat tcagcattac tggaatctgc
      301 gaattgtcgc cagttcgcta tgtttaagcc ccgcctgctc aaaaagaaat taaaaaacga
      361 aaataccagc tatagccaga ttgtcacaga gtgtcgtatg cgttacgccg tacagatgtt
      421 attgatggat aacaaaaata tcactcaggt ggcgcaatta tgtggctata gcagcacgtc
      481 gtactttatc tctgttttta aggcgtttta cggcctgaca ccgttgaatt atctcgccaa
      541 acagcgacaa aaagtgatgt ggtgaagggc aaagcggaaa cggataagac gggcataaat
      601 gaagaagaaa tggcgcgccc tgcaggattc gaacctgcgg cccacgactt agaaggtcgt
      661 tgctctatcc aactgagcta agggcgcgtt gataccgcaa tgcggtgtaa tcgcgtgaat
      721 tatacggtca acccttgctg agtcaatggc ttttgatctg gttgctgaac aagtgaacga
      781 ccgcgtctga ttttctgatt tatttcgcta tagcggcaaa caaacgcaca ccgctgcgcg
      841 tctgaatcaa gaaaacccgt attttcatgt atcaaagtac aatttaccgc cctaacggaa
      901 aattgtccgc tcctatgaga ctggtaacta tgaaaccaac gtcggtgatc attatggata
      961 ctcatcctat catcagaatg tctattgaag ttctgttgca aaaaaacagt gaattgcaga
     1021 ttgtcctgaa aacggatgat taccgcataa ccatcgatta tctccgaacc cgtcctgttg
     1081 atttaatcat tatggatata gacttgcccg gaacagacgg ttttaccttc ctgaaaagga
     1141 tcaaacaaat ccagagcaca gtgaaagtgt tatttttatc atcgaaatca gaatgctttt
     1201 atgctggcag agcgatacaa gctggtgcta acggttttgt cagtaaatgc aatgatcaga
     1261 atgatatttt tcatgccgtt cagatgatcc tctccggata cacgtttttt cccagcgaaa
     1321 cgcttaacta tataaaaagc aataaatgta gtacgaatag ttcaacggtc actgtgctat
     1381 ctaatcgtga agtgaccata ttacgttatc tggttagcgg attatctaat aaagaaattg
     1441 ccgataagtt attgcttagc aataaaacag ttagtgcgca taaatctaat atttat
//
LOCUS       DADMHM010000352         1458 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.358, whole genome shotgun sequence.
ACCESSION   DADMHM010000352 DADMHM010000000
VERSION     DADMHM010000352.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1458)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1458)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1458
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.358"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(127..463)
                     /locus_tag="JN125_004230"
                     /pseudo
     CDS             complement(127..463)
                     /locus_tag="JN125_004230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_009502602.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1044..1370)
                     /locus_tag="JN125_004231"
     CDS             complement(1044..1370)
                     /locus_tag="JN125_004231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000477619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873758.1"
                     /translation="MFKYAEMLMAEEDDKVCELIFKQQDNLILKINDRFPRIIIKKYR
                     TLQGKVVWLWILPFVIEWLILCALGVNSWRGKSKYPDYYLLRDEMPVRLVSIIFPTLL
                     ALFLLA"
BASE COUNT          467 a          273 c          250 g          468 t
ORIGIN      
        1 tccactagtt gaaaaggtgg gcacctacgt taccaataca ggcttaatgg ctacatacgg
       61 cggtcagttt acgcttacaa taaatatgaa aagatggttt aaataccccg ttacttttga
      121 cttacactat acggtatcgc atcgtttaat attcgcaccg gccagatttt tatttctatt
      181 agttgtcaca atactgaatg cgtacgacca cagtattctg gctcctgtgt ggtcatgctt
      241 taattctgcg ttccggacag ataagcagtt gcttgcagga atccttcttg tgttaatgtc
      301 agttcccctt tttaccagtg ctgatttcca cattccgtcc aacagagctt atagcctttc
      361 cctggattat agcattgtcc ggctgaagtt ctttttgaat aataatagaa gcactgctgg
      421 cagatccagt ccgtttttca taacccactg tactgataac cataatctaa tcagtagaaa
      481 ttgagtcgaa aataagcact actccataca ggataattag aggtcagttt gattattcac
      541 aattcatcat cagcattttc tgtttctgac gaaatcaaca tgaaaagaac catatatgat
      601 aattattata ataacggctt taattggaat acatatatta caacgtatta tatataattg
      661 gtattctggg aactatattc tcaaaataca gtagaaacga ggtatgtttc tggtggaaag
      721 gacagtggga ttaaaaagta agaattgata aaaaaacgcc agcaacacat agtgccggcg
      781 gagggaatac cccatggaga aaatgtgatg cctagagcac catgaatata taattaaaaa
      841 tagttagcgt tgtcaatact ttcacaaaaa taattttcgt agtttcgtag tttcgtagtt
      901 tcgtagtttc gtagtttcgt agtttcgtag tttcgtagta tagaaagata tttttatgca
      961 tgacctacct gaatttgctc cgggtagagg ttataaataa aaattgaatc acgacaaaca
     1021 caatattcat agtatggcga tgcctacgcc agcaagaata gcgccaataa tgttgggaat
     1081 ataatagaca ccagacgcac aggcatctca tctcttaaca aataataatc agggtattta
     1141 cttttgcctc gccagctgtt tacgcctaaa gcacacaaga ttaaccattc aataacaaat
     1201 ggcaatatcc atagccatac gactttacct tgtaatgttc ggtatttctt tataattatt
     1261 ctgggaaatc tatcatttat ttttaaaatc aaattatctt gttgtttaaa aataagttca
     1321 catactttat catcttcttc cgccatcaac atctctgcat acttaaacat ttcagaacgt
     1381 tcctttagca cagaagagta attatatgtc cagttcccag gcaataatgc ttatggatat
     1441 ttaattaata atttagag
//
LOCUS       DADMHM010000353         1451 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.359, whole genome shotgun sequence.
ACCESSION   DADMHM010000353 DADMHM010000000
VERSION     DADMHM010000353.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1451)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1451)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1451
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.359"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..964)
                     /locus_tag="JN125_004232"
     CDS             complement(<1..964)
                     /locus_tag="JN125_004232"
                     /EC_number="6.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--cysteine ligase"
                     /protein_id="HAY8873759.1"
                     /translation="MPLPDFHVSEPFTLGIELEMQVVNPPGYDLSQDSSILIDAVKNK
                     ITAGEVKHDITESMLELATDVCRDINQAAGQFSAMQKVVLQAAADHHLKICGGGTHPF
                     QKWQRQEVCDNERYQRTLENFGYLIQQATVFGQHVHVGCASGDDAIYLLHGLSRFVPH
                     FIALSAASPYMQGTDTRFASSRPNIFSAFPDNGPMPWVSNWQQFEALFRCLSYTTMID
                     SIKDLHWDIRPSPHFGTVEVRVMDTPLTLSHAVNMAGLIQATAHWLLTERPFKHQEKD
                     YLLYKFNRFQDCRYGLEGVITDPHTGDRRPLTEDTLRLLEKIAPS"
BASE COUNT          371 a          329 c          380 g          371 t
ORIGIN      
        1 cggaaggggc gattttttcc agcaatcgca aggtgtcttc cgttagcggt cgacgatcgc
       61 cagtgtgcgg atcggtaatg acgccttcca gcccatagcg acagtcctgg aaacggttga
      121 atttatacag caggtaatct ttctcctgat gtttgaacgg gcgttctgtc agtaaccagt
      181 gggcggtagc ctgaattaat cccgccatat ttaccgcgtg gctaagggtt aacggggtat
      241 ccatcacccg aacctccacc gtgccaaaat gaggactggg gcgaatatcc cagtgcagat
      301 ctttaatgct gtcgatcatc gtggtgtaac tcagacagcg aaacagggct tcaaattgtt
      361 gccagttact gacccacggc atcggaccat tatcaggaaa ggcggaaaaa atattcggtc
      421 gtgaggaggc aaaacgcgta tccgttcctt gcatatatgg cgacgcggcg gaaagggcga
      481 tgaagtgcgg cacaaaccgt gacaggccgt gcagcaaata aatggcgtca tcgccactgg
      541 cgcagccaac atgaacatgc tgaccaaaaa cggtcgcctg ttgaatgaga taaccaaagt
      601 tttccagcgt tcgttgatag cgctcgttat cgcatacctc ctgtcgctgc catttctgaa
      661 acgggtgtgt gccaccgccg caaattttca gatgatggtc tgcggctgcc tgcaatacga
      721 ctttctgcat cgctgaaaat tgcccggcag cctggttgat atcacggcaa acatccgtcg
      781 ccagctccag catactttcg gtgatatcgt gctttacctc tccggccgtg atcttatttt
      841 taaccgcgtc aatcagtatt gaagagtcct ggcttaagtc atagcccggc ggattaacca
      901 cctgcatttc cagttcaata ccgagtgtaa aaggttcaga aacatgaaaa tcgggtaatg
      961 gcataggttt ctcttatgtt ggcgttttct attcagtata gaagtgggag cggctgggcg
     1021 agatgcggaa gttctggaat gtttcttttt ttggtgatgg tgaactgatt atgacagaag
     1081 caatttggct acttttgcaa tgtgacaagt tatggcagtg ctgactggtg gcgaagaatt
     1141 ttgacgattg aggcatgcag aaaaaaacgg gttcagcttc agttgatcaa atggggagtg
     1201 agaagtccga aacaggactt actgtataaa taaacagcta ttttgctaag caagggtaag
     1261 ataactgcgg gtgcctgaag ctttccggtt tcaggtttac tctgaggtct ggaaagatga
     1321 agccccagga cgatatttct atcaaccctg gggctaccta cccaaacctg aacaatttgg
     1381 atggtagtcc cttcttcgca tggaggcaat ataaacatgc tgacgaaata tgcccttgcg
     1441 gcagtcatag t
//
LOCUS       DADMHM010000354         1427 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.360, whole genome shotgun sequence.
ACCESSION   DADMHM010000354 DADMHM010000000
VERSION     DADMHM010000354.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1427)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1427)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1427
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.360"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            29..1414
                     /locus_tag="JN125_004233"
     CDS             29..1414
                     /locus_tag="JN125_004233"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000398460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HAY8873760.1"
                     /translation="MEGGWNEGGKGISIADVMTAGAHGVPREVTEGVIDGLNYPNHEA
                     IDFYHRYKTDIQLFAEMGFKCFRTSIAWTRIFPQGDEQEPNEEGLQFYDDLFDECLKQ
                     GMEPVVTLSHFEMPYHLVTKYGGWRNRKLIDFFIRFASTVFTRYKEKVKYWMTFNEIN
                     NQVNFSESLCPFTNSGILYSPEEDINEREQIMYQAVHYELVASALAVQTGKSINPEFN
                     IGCMIAMYPIYPLTCVPNDMMMATKAMHRRYWFTDVHARGYYPQHMLNYFARKGFNLD
                     ITPEDNAILASGCVDFIGFSYYMSFTTQFSPDNPQLDYVEPRDLVSNPYIDTSEWGWQ
                     IDPAGLRYSLNWFWDHFQLPLFIVENGFGAVDQRQADGTVNDHYRIDYFASHIREMKK
                     AVVEDGVDLIGYTPWGCIDLVSAGTGEMKKRYGMIYVDKDNEGKGTLERIRKASFYWY
                     RDLIANNGENI"
BASE COUNT          396 a          290 c          358 g          383 t
ORIGIN      
        1 atggggcggc gcggtagccg cgcatcagtt ggaaggtggc tggaatgaag gaggaaaagg
       61 catcagtatc gctgatgtga tgactgctgg cgctcacggg gtgccgcgtg aagtgacaga
      121 aggcgttatc gacgggctta attatcccaa tcatgaagca attgattttt atcatcgcta
      181 taaaacagat attcagttat ttgccgagat gggattcaaa tgctttcgaa cttccattgc
      241 ctggacacga atctttccgc aaggtgacga acaggagccg aatgaagagg gtttacaatt
      301 ttatgatgat ctgttcgatg aatgccttaa gcagggaatg gaacctgtgg tgacgctttc
      361 acattttgag atgccttatc atctggtgac aaaatatggt ggctggcgaa accgtaaact
      421 gatcgacttt tttatccgct tcgcatcaac ggtcttcacg cgctataaag aaaaagtaaa
      481 gtactggatg acgtttaacg aaatcaataa tcaggtgaat ttcagcgaaa gcctgtgtcc
      541 atttactaat tccggtatct tgtattcgcc agaggaagat atcaatgagc gcgaacaaat
      601 aatgtaccag gcggtacatt acgagttagt tgccagtgcc ctggcggtac agactggaaa
      661 atcgatcaat cctgaattta acattggctg tatgatcgcc atgtatccca tctatcctct
      721 gacgtgtgta cccaacgata tgatgatggc cacgaaagca atgcatcgtc gttactggtt
      781 tactgatgtt catgctcgtg gatattatcc gcaacatatg ctgaattact ttgccaggaa
      841 aggattcaac ctcgatatca caccagaaga taacgcgatt cttgccagtg gttgtgtcga
      901 ctttatcggc tttagctact acatgtcttt tacgacacaa ttttcgcccg ataacccgca
      961 actggattat gttgaaccac gagatttggt cagcaaccct tatatcgata catccgaatg
     1021 gggatggcaa attgatccgg cagggctacg ttattcactc aactggttct gggatcattt
     1081 ccagttgccg ctgtttattg tcgaaaatgg atttggtgcg gttgaccaga gacaagctga
     1141 cggcacggtg aacgatcact atcgcattga ttactttgct tcccatattc gggaaatgaa
     1201 aaaagccgta gttgaagatg gtgttgactt aattggctac accccgtggg gctgcattga
     1261 cctggtttct gccggaacag gggaaatgaa aaagcgctac ggaatgattt atgtcgataa
     1321 agacaacgaa gggaagggaa cgctggaacg gatacgtaaa gcgtcgtttt actggtatcg
     1381 ggatctcatc gccaacaatg gcgaaaatat ttgagacttg aggaaga
//
LOCUS       DADMHM010000355         1425 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.361, whole genome shotgun sequence.
ACCESSION   DADMHM010000355 DADMHM010000000
VERSION     DADMHM010000355.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1425)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1425)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1425
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.361"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(93..575)
                     /locus_tag="JN125_004234"
     CDS             complement(93..575)
                     /locus_tag="JN125_004234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAY8873761.1"
                     /translation="MEINVTAPALLTDEHILQPFDCGNEVLSNWLRGRAMKNQMLNAS
                     RTFVICLEDTLRVVGYYSLATGSVTHAELGRSLRHNMPNPVPVVLLGRLAVDVCTQGH
                     GFGKWLLSDAIHRVVNLADQVGIKAVMVHAIDDDARAFYERFGFVQSVVAPNTLFYKV
                     "
     gene            complement(566..868)
                     /locus_tag="JN125_004235"
     CDS             complement(566..868)
                     /locus_tag="JN125_004235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858193.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="HAY8873762.1"
                     /translation="MEVFMSTAASVRKTPREHQINIRATDEERAVIDYAASLVNKNRT
                     DFIMELAYQEAKNIILDQRLFVLDNEHYDSFITQLEAPVQNAEGRERLMAVKPEWK"
     gene            1140..1412
                     /locus_tag="JN125_004236"
     CDS             1140..1412
                     /locus_tag="JN125_004236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_145811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873763.1"
                     /translation="MSHNLEHQKVHTRMVKEVLKAVARANNHPYKSVFADFITGHPSC
                     TVCFWETFHKMYPDSPYEYVTFCHTCRRFDLYETEAEMKADDPKWW"
BASE COUNT          411 a          355 c          303 g          356 t
ORIGIN      
        1 agtaacgttg ggtttttctg ctcattattg gctccttctg atgccattct atttcaggaa
       61 ggagtgtccg ttaaactcag gctacctcag actcagactt tataaaacaa ggtattaggt
      121 gccacaactg actgaacaaa accaaaacgc tcataaaatg ctctggcgtc atcatcaatt
      181 gcatgtacca taacagcctt aatgccaacc tgatcagcca gattgacaac ccggtgaatg
      241 gcatcactta gtagccattt accgaaacca tgcccctggg tacaaacatc aacagccaga
      301 cgccctaaca gaacaacagg gacaggattg ggcatgttat gccgcaaact gcgaccaagc
      361 tcggcatgag tgacggaacc agtagctaat gagtagtatc ccacaacacg taaagtatcc
      421 tccaagcaaa taacgaacgt gcgagaagca ttgagcatct ggtttttcat agcccgacca
      481 cgtaaccagt tacttagcac ctcatttcca cagtcaaatg gctgaagtat atgctcatcc
      541 gtcaacaatg ctggcgcggt gacatttatt tccattcagg ctttaccgcc atcagacgtt
      601 cacgcccttc tgcattctgc acaggagctt ccagttgcgt aataaacgaa tcataatgtt
      661 cgttatccag cacaaataaa cgttgatcca agataatgtt tttagcttcc tggtacgcca
      721 gttccatgat gaaatcggta cggttcttat tgaccaagct cgcagcataa tcaataacgg
      781 ctcgttcctc atcagttgcc cggatgttaa tctgatgttc tcgcggtgtt ttacggacgc
      841 ttgcagctgt agacataaaa acctccattg gtaacaattt gctatgcaat taatgttatc
      901 gcaaatggta acagaacgct atacagaatc acttacggga aaagcgatcc cctgataaaa
      961 acaatggcag agacctgaac attgtgacga tgatctgtgt cggcgcacaa atcatgtctg
     1021 attacggccg tttaatgtga ttttgataat gaaatgcctg aaccacggca gcctggcggc
     1081 tgcaaatcgg ggtgtggcag aatatgagct ttcagagtaa ccatccagaa tgagttccca
     1141 tgtcacacaa cctggagcac cagaaagtcc acaccagaat ggtgaaagag gttctgaaag
     1201 ccgtcgccag agccaataat cacccttata agtccgtatt tgcagacttt atcaccggtc
     1261 atccctcctg cacggtctgt ttctgggaaa ccttccacaa aatgtacccg gattcaccgt
     1321 acgaatacgt cacgttctgc catacctgcc gtcgttttga tttatacgaa acagaagcgg
     1381 agatgaaggc ggatgacccg aagtggtggt gattttcagc cccgc
//
LOCUS       DADMHM010000356         1417 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.362, whole genome shotgun sequence.
ACCESSION   DADMHM010000356 DADMHM010000000
VERSION     DADMHM010000356.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1417)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1417)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1417
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.362"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..546
                     /locus_tag="JN125_004237"
     CDS             <1..546
                     /locus_tag="JN125_004237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001291189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
                     /protein_id="HAY8873764.1"
                     /translation="FGIVYISSQLALSRDIPLTGMLIASAIGIFSCPLVGWLSDRIGQ
                     KSLYLSGAGFCVLFAFPFFLLLDSKSTLIIWCSMILGYNLGPTMMFAVQPTLFTRMFG
                     TKVRYTGLSFAYQFSAILGGLSPLIASSLLALGGGKPWYVALFLFAVSVLSFVCVWLI
                     EPTDEQETASYRYIREQSHEN"
     gene            536..>1417
                     /locus_tag="JN125_004238"
     CDS             536..>1417
                     /locus_tag="JN125_004238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001309103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase"
                     /protein_id="HAY8873765.1"
                     /translation="MKTERKNEHYLALQQAFDAPWPGPVGELVTLEKGNIHLQIYPHD
                     GARITSLKAFGSEVLRQWQPQRRAFQYGCFPMVPWAGRLGNAMLNAGGQCYSLPANKP
                     PHALHGMACYSTWEIIDKTADSLTLRMPLASPWPWQGEVIQTFLLENDALVLQLEVHS
                     YADTFPASAGWHPWFAKKLTPQNTESLQVLFDADWQEEAGSDELPTGNRISPQAGPWD
                     DCFGFYNGVKVKLLWPGKLAMTMISSANSLVVFDKQPDATCINPLTQAPNAINLTPEL
                     VTPDRPLVIETRWQFTPE"
BASE COUNT          328 a          331 c          358 g          400 t
ORIGIN      
        1 tttggtattg tctatatttc cagccaatta gcattgtcgc gagatattcc cctgacgggt
       61 atgttgattg cctcggcgat cggtattttc agttgtccat tggttggatg gttatcagat
      121 cgtataggtc aaaaaagtct gtatttgtcg ggagcaggat tttgtgtcct gttcgcgttt
      181 cctttcttct tattactgga tagcaaaagt acgctcatca tctggtgcag tatgatcctc
      241 ggctacaact taggtccgac gatgatgttt gccgtgcagc caacactttt cacccgcatg
      301 ttcggtacca aagtacgata taccggcctt tcttttgctt atcaattttc cgcgattctt
      361 ggcggactaa gcccccttat cgcctcaagt ttgctggcgc tagggggagg aaaaccgtgg
      421 tatgtcgctc tgtttttatt tgctgtctca gttctttcct ttgtttgcgt ctggctgatt
      481 gagccgaccg atgaacaaga aaccgcttct taccgctaca tcagggaaca atctcatgaa
      541 aactgaacga aaaaacgagc attacctggc gctacaacag gcgtttgacg cgccatggcc
      601 tgggcctgta ggagagttag tgacgctgga aaaaggcaat attcacctgc agatttatcc
      661 gcatgatggt gccaggataa cctcgttaaa ggcatttggt tctgaagtat tacgccaatg
      721 gcagccgcag cgcagagctt ttcagtatgg ctgtttccca atggtgccgt gggcagggcg
      781 actggggaat gcgatgctga atgctggtgg gcaatgttat tctttacccg ccaataaacc
      841 accacatgcg ttgcatggta tggcttgtta ctcaacgtgg gaaatcatcg acaaaacagc
      901 agattccctg actttacgta tgcccctggc ttcaccgtgg ccctggcaag gggaagtgat
      961 tcagactttt ttgctggaga acgatgcgct ggttttgcaa ctggaagtcc attcatatgc
     1021 cgatacattc ccggcctccg ctggctggca tccgtggttt gcgaaaaagc tgactccgca
     1081 aaatacagaa tcgttgcagg tgctttttga tgcggactgg caagaagaag cgggtagtga
     1141 tgaactgcca actggaaatc gtatctctcc tcaagccggt ccctgggatg actgttttgg
     1201 tttttataac ggggtgaagg ttaagttact gtggcctggt aaactcgcga tgaccatgat
     1261 ctcttctgca aacagtctgg tggtatttga taaacagccc gatgccacct gtattaaccc
     1321 gctgactcag gcacctaacg caataaatct aacgccggaa ttggtgacac cagataggcc
     1381 gctggtcatc gaaactcgtt ggcaatttac acctgaa
//
LOCUS       DADMHM010000357         1367 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.363, whole genome shotgun sequence.
ACCESSION   DADMHM010000357 DADMHM010000000
VERSION     DADMHM010000357.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1367)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1367)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1367
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.363"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            441..1190
                     /locus_tag="JN125_004239"
     CDS             441..1190
                     /locus_tag="JN125_004239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HAY8873766.1"
                     /translation="MKRQLFTLSIVGVFSLNTFASFPPGNDVTTKPDLYYLTNDNAID
                     SLALLPPPPQIGSIAFLNDQAMYEKGRLLRNTERGKLAAEDANLSSGGVANVFSAAFG
                     SPITAKDSPELHKLLTNMIEDAGDLATRSAKEYYMRIRPFAFYGVSTCNTKEQDTLSR
                     NGSYPSGHTSIGWATALVLSEINPARQDTILKRGYELGDSRVICGYHWQSDVDAARIV
                     GSAIVATLHSNPVFQAQLQKAKDEFANNQKK"
BASE COUNT          377 a          280 c          284 g          426 t
ORIGIN      
        1 gtggtggatt agcccggcag gtgggcgctg gctcctgagc accataaaca gggctttacc
       61 cgtcaatatt ggctccttct gatgccattc tatttcagga aggagtgtcc gttaaactca
      121 ggctacctca aaaagttatc ggtgcgttta tcgaaaaaca tatgttctac taattggagt
      181 cattgtctgt aaaagcaact caaaaataca agttgcttat tccccttgtt ggtaagaact
      241 taattctaac tgtttgttct gggtgtttta aacgtcctcc tttttatgct tgttcataac
      301 ggatatttaa taggtaacct ttgttttagc atcttctgat ttatttaaat tatgtgatag
      361 tgcacacaat tttattatcc agtactttat actcttaata aaataattat aaatatttat
      421 cctctataag gagatgttat atgaaaagac agctttttac tcttagtatt gtcggggtat
      481 tttctttaaa tacctttgca tcattccctc cgggaaatga tgtgacaaca aaacctgacc
      541 tttactacct gacaaacgat aatgctattg acagtctggc attattaccg cctccaccac
      601 aaatcggaag tattgccttc ctgaatgacc aggccatgta tgaaaagggg cgtttattgc
      661 gaaatactga aagagggaag ctggcagctg aggatgccaa tctcagtagt ggtggcgtgg
      721 caaatgtatt ttctgctgct tttggttctc cgataacggc taaagattca ccagaattgc
      781 ataaattact gacaaatatg attgaggatg ccggagactt ggcaacgcgt tcagcaaaag
      841 aatattatat gcgtattcga ccttttgctt tttatggtgt ttctacgtgt aatacaaaag
      901 aacaggatac attatccaga aatggctctt atccatcagg tcatacatcg attggttggg
      961 caacagcact tgtattgtcc gaaataaatc cggcacgcca ggataccatt ctgaaacggg
     1021 gttatgaact gggggacagc agggttattt gcggttatca ctggcaaagt gatgttgacg
     1081 cagcacgtat tgttggctct gctattgtag caacactgca ctcaaatcct gtgttccagg
     1141 cacaattaca aaaagcgaaa gatgaattcg ctaacaatca gaaaaaataa tgcttttagc
     1201 cagtacgcct tataaccccg accttcaggg ctaatgccag tcagttaagc aactgactgg
     1261 ctctttttca gggctgtggg gtatttccag ggcctctcct ttaccactct cgggaaggcc
     1321 ctttcccttc ttgtcggtaa tttcactagg ctgtgtccct cttaatg
//
LOCUS       DADMHM010000358         1364 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.364, whole genome shotgun sequence.
ACCESSION   DADMHM010000358 DADMHM010000000
VERSION     DADMHM010000358.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1364)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1364)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1364
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.364"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            598..882
                     /locus_tag="JN125_004240"
     CDS             598..882
                     /locus_tag="JN125_004240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858243.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1778 domain-containing protein"
                     /protein_id="HAY8873767.1"
                     /translation="MIYGGFMKSGVQLNLRARESQRILIDAAAEILHKSRTDFILEMA
                     CKAAEDVILDRRVFNFNDRQYEEFIEMLDAPVADDPAIEKLLARKPQWDV"
     gene            870..1355
                     /locus_tag="JN125_004241"
     CDS             870..1355
                     /locus_tag="JN125_004241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HAY8873768.1"
                     /translation="MGCVTAPEPLSSFHQVAEFVSGEAVLDDWLKQKGLKNQAIGATR
                     TFVVCRKGTQQIVGFYSLATGSVNHTEATGNLRRNMPDPIPVIILARLAVDVSFRGKG
                     LGADLLHDAVRRCYRVAENIGVRAIMVHALTENAKQFYIHHGFKPSKTQVQTLFLKLP
                     Q"
BASE COUNT          352 a          292 c          370 g          350 t
ORIGIN      
        1 cggcatccgg catataggca gcatgaacgc aacacaggct ctcgtacgga acgtgggaac
       61 ctgtcgtctc gatgctaagg gagcggcgcg gagcagaggc actgcaagcg cctgagtacc
      121 gatgcgagac acaggggcag atggcttcgt agtagtgagg aagtgcctgt aatgggcatg
      181 gagcgaaggg ggtcagtcga ggcgtttgag gttaccaatc gaagctatac ccggtaatgg
      241 cgtaggttga cctgcacttg gccaagtgga ttgcccgcaa acacaagcga gcgcgaggta
      301 gtctggtgcg tgcattcgag tggttactgc gaattcgtca cgactgcccg acgctgtttg
      361 cacactggtg cttagcttac gatacttgaa tggttcaacg acaagagccg tatgacgcga
      421 gagtgtcacg tacggttccg tgggagcgta ggggggcggt gcccctgcgc cacccgatat
      481 cccctttgag tgcggttacg tccacagagg taaatgccgc tgacgcggca tctgtaatct
      541 gttactttgt gtatatcatt tgctatatat tgtcaatatg ctattgttgt aaagcaaatg
      601 atatacggag gctttatgaa atcaggtgtt cagctcaatc tcagagcaag agaatcacag
      661 cggatactca ttgatgctgc tgcagaaatt cttcataagt cgcgtacaga tttcattctg
      721 gaaatggcct gtaaagctgc tgaagatgtt attctcgacc ggcgggtgtt taattttaat
      781 gacaggcaat atgaagagtt cattgaaatg cttgatgctc cggttgcaga tgatcctgcc
      841 atcgaaaaat tgctggcaag gaaacctcaa tgggatgtgt aactgcacca gaacctttat
      901 cctcatttca tcaggtcgct gaatttgtca gcggtgaagc tgtacttgat gactggttaa
      961 agcagaaggg gctaaaaaat caggcaatcg gagccacccg gacttttgtt gtatgcagaa
     1021 aaggtacgca acaaatagtc ggtttttact cactggccac tggtagtgtc aatcatacag
     1081 aagctacagg taaccttcgg cgcaatatgc cagaccccat tcctgtaatt atacttgcac
     1141 gcctggctgt agatgtgtca tttcgaggaa aagggcttgg cgcggattta cttcatgatg
     1201 cagttcgtcg ttgttacagg gttgccgaaa atatcggtgt gcgtgcaatt atggttcatg
     1261 cgcttacgga aaacgcaaaa cagttttata ttcatcatgg ttttaagcca tcaaaaactc
     1321 aggtgcaaac attgtttctt aaactccctc aatagggagt aatg
//
LOCUS       DADMHM010000359         1351 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.365, whole genome shotgun sequence.
ACCESSION   DADMHM010000359 DADMHM010000000
VERSION     DADMHM010000359.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1351)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1351)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1351
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.365"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            1..1144
                     /locus_tag="JN125_004242"
                     /pseudo
     CDS             1..1144
                     /locus_tag="JN125_004242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415291.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="anion permease"
BASE COUNT          297 a          315 c          345 g          394 t
ORIGIN      
        1 cgtttacctt aagcgccgca tttgtgacca ccggtttagg taaacgtatt gcctatctgc
       61 tgattggtaa aatcggtaac accacgctgg gtctgggtta cgttacggta ttcctcgatc
      121 tggtactggc tccggcaaca ccgtctaaca ccgcgcgtgc gggcggcatt gtgttaccga
      181 tcatcaacag cgtggcggtg gctttggggt ccgaaccgga aaaaagtccg cgtcgtgtcg
      241 gacattacct gatgatgtcc atttacatgg tcaccaaaac caccagctat atgttcttta
      301 ccgcaatggc ggggaacatt ctggcgctga aaatgatcaa cgatattctg cacctgcaaa
      361 ttagctgggg tggatgggcg ctggccgccg gattgccggg catcattatg ctgcccggca
      421 atccgctggt aatttacacc atgtatccac cagaaattaa aaaggtggat aacaaaacca
      481 tcgctaaagc gggccttgcc gaactgggac cgatgaaaat ccgcgaaaaa atgctgctcg
      541 gtgtctttgt gctggcgcta ctgggctgga ttttcagtaa gtctctgggg gttgatgaat
      601 ccactgtggc aatcgttgtt atggcgacca tgctgctgct gggtatcgtt acctgggaag
      661 acgtggttaa aaataaaggc ggctggaata ccttaatctg gtacggcggt attatcggat
      721 taagctcctt attatcgaaa gttaaattct tcgaatggtt agctgaagtc tttaaaaata
      781 acctggcatt tgatggtcac ggtaacgttg ctttcttcgt tattattttc ctcagcatta
      841 tcgtgcgtta tttcttcgct tccggtagtg cctatatcgt tgctatgtta ccggtatttg
      901 ccatgctggc gaacgtctcc ggcgcaccgt taatgttaac cgcgctggca ctgttgttct
      961 ccaactccta tggcggcatg gttactcact atggcggcgc ggcaggtccg gtcatctttg
     1021 gcgtgggtta taacgatatt aaatcctggt ggtcggtgcg gtactgacga tattaacctt
     1081 cctggtgcat atcaccctcg gcgtgtggtg gtggaatatg ctgatcggct ggaacatgct
     1141 gtaaatattc tcgtcatact tcaagttgca tgtgctgcgt ctgcgttcgc tcaccccagt
     1201 cacttactta tgtaagctcc tggggattca ctcgcttgtc gccttcctgc aactcaaatt
     1261 atttagagta tatccattta ttatctttct gcgcacttca cggtgcgcag atatctggag
     1321 catttgatga tcaagttatc tgaaaaaggg t
//
LOCUS       DADMHM010000360         1347 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.366, whole genome shotgun sequence.
ACCESSION   DADMHM010000360 DADMHM010000000
VERSION     DADMHM010000360.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1347)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1347)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1347
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.366"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(32..1321)
                     /locus_tag="JN125_004243"
     CDS             complement(32..1321)
                     /locus_tag="JN125_004243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005155249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8873769.1"
                     /translation="MHTRYLILLIIFIVTAVNYADRATLSIAGTEVAKELQLSAVSMG
                     YIFSAFGWAYLLMQIPGGWLLDKFGSKKVYTYSLFFWSLFTFLQGFVDMFPLAWAGIS
                     MFFMLGFSEAPSFPANARIVAAWFPTKERGTASAIFNSAQYFSLALFSPLLGWLTFAW
                     GWEHVFTVMGVIGFVLTALWIKLIHNPTDHPRMSAEELKFISENGAVVDMDHKKPGSA
                     AASGPKLHYIKQLLSNRMMLGVFFGQYFINTITWFFLTWFPIYLVQEKGMSILKVGLV
                     ASIPALCGFAGGVLGGVFSDYLIKRGLSLTLARKLPIVLGMLLASTIILCNYTNNTTL
                     VVMLMALAFFGKGFGALGWPVISDTAPKEIVGLCGGVFNVFGNVASIVTPLVIGYLVS
                     ELHSFNAALVFVGCSALMAMVCYLFVVGDIKRMELQK"
BASE COUNT          392 a          354 c          331 g          270 t
ORIGIN      
        1 aaacatcgtt attcatcgct tatacctttg cttatttctg caattccata cgtttaatgt
       61 cgccaactac gaagaggtag cagaccatcg ccatcagcgc tgaacatccc acgaaaacca
      121 gtgctgcatt gaaggagtgc agttcactta ccaggtagcc aatcaccagt ggagtgacaa
      181 tggaggcaac attgccaaag acgttaaaga cgccgccaca gaggccaaca atctctttcg
      241 gcgcggtgtc agaaatcacc ggccagccca gagcaccaaa tcctttgcca aaaaaagcca
      301 gcgccatcag catgaccacc agcgtggtgt tgttggtgta gttacataag atgatggtgg
      361 aagccagcaa cattcccagc acaatcggta gcttacgtgc cagggtcagg gataaaccgc
      421 gtttgatcag ataatccgag aagacacctc ccagcacgcc gcccgcaaaa ccacacagtg
      481 ccggaatcga ggcgaccaga cccactttca gaatcgacat gcctttttcc tgcaccagat
      541 aaatcgggaa ccaggtgagg aagaaccagg tgatggtgtt gataaaatat tgtccgaaaa
      601 atacgcccaa catcatgcgg ttagagagca attgcttgat gtaatgcagt ttgggaccgc
      661 ttgctgccgc gctgcccggc tttttgtggt ccatatcgac caccgcgcca ttttcagaga
      721 taaacttcag ctcttccgca gacatacgtg ggtgatctgt cgggttatga atcaacttga
      781 tccacagcgc cgtcagcaca aaaccaatca cccccataac ggtgaagacg tgctcccagc
      841 cccaggcgaa agtcagccag ccaagcagag gcgaaaagag cgccagcgag aaatattgcg
      901 ccgagttaaa gatggcggag gcagtaccac gttctttcgt cgggaaccag gcggcgacaa
      961 tacgggcgtt cgccgggaat gatggcgctt ccgagaagcc gagcataaag aacatagaga
     1021 tccctgccca ggccagcggg aacatatcaa caaagccttg caggaaggtg aatagcgacc
     1081 agaaaaagag gctgtaggtg taaacttttt tcgagccaaa cttatcaagc agccagccgc
     1141 cgggaatttg catcagcagg taggcccagc caaaagcgga gaagatgtaa cccatcgaaa
     1201 ccgcacttaa ctgcaactct tttgccactt cggtaccagc aatagacagc gttgcacgat
     1261 cggcgtagtt aacggcggta acaataaaaa taatcagtaa tattaaatag cgggtatgca
     1321 cgcctttctt ttttacgtca acggtgt
//
LOCUS       DADMHM010000361         1321 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.367, whole genome shotgun sequence.
ACCESSION   DADMHM010000361 DADMHM010000000
VERSION     DADMHM010000361.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1321)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1321)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1321
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.367"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            1..1321
                     /locus_tag="JN125_004244"
                     /pseudo
     CDS             1..1321
                     /locus_tag="JN125_004244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415260.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-mannosidase"
BASE COUNT          346 a          305 c          341 g          329 t
ORIGIN      
        1 cggcaagttg attatcggcc cctggtatac ccagaccgat accacgattg tttctgcgga
       61 atccatcgtc cgtaatctga tgtacggaat gcgtgactgc ctcgcgtttg gcgagccgat
      121 gaaaataggt tatttaccag attcctttgg catgtccggg caactgccgc atatctacaa
      181 tggatttggc attacccgca ccatgttctg gcgcggatat tcggagcgcc acggtactga
      241 taaaaccgag tttttgtggc aaagcagtga cggtagcgaa gtgacggcgc aggtgctgcc
      301 gctgggctac gccatcggta agtacttacc tgccgacgaa aacggattac gtaaacgcct
      361 cgacagttat tttgacgtgc tggaaaaagc gtctgtaacc aaagagattt tgctgccgaa
      421 tggtcatgac cagatgccat tgcagcaaaa tatcttcgaa gtgatggata agctacgtga
      481 gatctaccct caacgtaagt ttgtgatgag ccgctttgaa gaggtatttg agaagatcga
      541 agcgcagcgt gaaagtctgg ccaccctgaa aggtgaattt atcgatggca aatatatgcg
      601 cgtacatcgc accatcggtt ccacgcgcat ggatatcaaa attgcccacg cacgtattga
      661 aaataagatt gttaatctgc tggaaccgct ggcaacgctg gcctggacgt tgggttttga
      721 ataccaccac ggcttgctgg agaaaatgtg gaaagagatc ttaaaaaatc atgcccacga
      781 cagtatcggt tgttgttgca gtgacaaagt tcatcgcgaa attgtcgccc gcttcgaact
      841 ggctgaagac atggcggata atctgctgcg tttctacatg cgcaaaattg ccgataacat
      901 gccacagagt gatgccgaca aactcgtgct gtttaacctg atgccctggc cgcgggaaga
      961 agttattaac accactgtgc ggctgcgcgc cagccagttt aatctacgag acgatcgcag
     1021 cctgtaccgt attttattcg tcatgcccgt gagatcgatc caggcctaat cgatcggcaa
     1081 atagttcatt acggtaatta cgatcccttt atggagtttg atatacagat caaccagatt
     1141 gtcccttcta tgggctatcg cacgctttat atcgaagcga atcagcctgg caacgtgatt
     1201 gcggcaaaaa gtgacgctga agggatactg gaaaatgctt tctggcaaat tgcgctcaat
     1261 gaggatggtt ctctgcaact ggtagataaa gacagcggtg tgcgctatga ccgagtattg
     1321 c
//
LOCUS       DADMHM010000362         1311 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.368, whole genome shotgun sequence.
ACCESSION   DADMHM010000362 DADMHM010000000
VERSION     DADMHM010000362.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1311)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1311)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1311
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.368"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(40..1224)
                     /locus_tag="JN125_004245"
     CDS             complement(40..1224)
                     /locus_tag="JN125_004245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000232708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8873770.1"
                     /translation="MVGFGNKYIAAQFGISPGLAATVNASVLIAALIGGLLANRVINR
                     FGQKRAFIIGMGLCTIGVAAVAIAPSIWWVLVCRVIMGFGLGIDFPLATNAVAELRGS
                     TSKKTGTSVNLWQMAWYVSTTVVYLVLLPLLLSGIAEEQLWRYGIFIGAIFAVIFMIL
                     RYFFIGESAMWAARVGRYQEACDILGKRYGVQARVAASGTTEAKFSEKAENKYSGGYG
                     ILFNDRYRKRTILGCVVATMQAWQYNAVGVYLPLTLAGIISGGLTGALTGSAVVNALC
                     GVTGGMIGSFILQRLGTRRQSMYGFAVVTLALLSLGALATTNPWLSLGLLGSIIFFHS
                     AGPGGLGMTIATLSYLPAIRPTGVRFARAIMRTGAIAGLIFWPMLWGALKTEAFYWLA
                     IG"
BASE COUNT          392 a          362 c          286 g          271 t
ORIGIN      
        1 attatctgaa cataaaacac tatcagtaag ttggagtcat tacccgattg ccaaccagta
       61 aaacgcttca gttttcaacg caccccacag catcggccag aaaatgagtc ctgcaattgc
      121 ccctgtgcgc ataatagcgc gggcaaatct gaccccagta gggcgaatag cgggaagata
      181 agagagtgtg gcaatggtca tgcccagccc accaggaccc gctgaatgga agaaaataat
      241 tgatcctaat aaccctaaag acagccaggg attagtcgtt gccagtgcgc ctaacgacag
      301 caatgctaag gtcacaacag caaatccata catcgactgt cggcgagtac ccagtcgttg
      361 gagaataaac gagccgatca tcccgcctgt caccccacaa agggcattca cgacggcaga
      421 accggtcaac gcgccagtaa gcccgccact tattattccc gccaacgtaa gaggaagata
      481 aacacctacg gcgttatatt gccacgcctg catggttgcc acgacacagc caagaatggt
      541 gcgtttgcgg taacgatcat taaataagat gccatatcca ccactgtatt tattctctgc
      601 tttttccgag aatttcgctt ctgttgtacc cgatgccgca acgcgagcct gaacaccata
      661 acgttttccc agaatgtcgc acgcttcctg gtaacgcccg acgcgtgcgg cccacattgc
      721 ggattcacca ataaagaagt aacgcaaaat catgaagatg actgcaaaaa tagctccgat
      781 gaatattccg taacgccaca attgttcttc agcgataccc gacagaagca gcggcaaaag
      841 taccaaataa acaacggttg tcgaaacata ccaggccatt tgccagaggt tgaccgacgt
      901 tccggttttc ttcgacgttg aaccacgaag ctctgccacg gcattggttg ccaaagggaa
      961 gtcgatgcct aaaccaaagc ccatgatgac gcggcacacc agcacccacc agatactggg
     1021 agcaatagct accgctgcaa caccgatggt gcacagcccc atgccaataa taaatgcccg
     1081 cttttgccca aagcggttta ttactcggtt cgctaataaa ccgccaatta acgcagcgat
     1141 taatactgat gcattgacgg ttgcagcaag acccggcgaa atgccgaatt gagcggcaat
     1201 gtatttatta ccaaacccca ccatcgccgc ctagtaggca tcaatcaata tgccgcccaa
     1261 agcaataaaa ataacgccga tactggtgtt gattgcagag ttcttattaa c
//
LOCUS       DADMHM010000363         1310 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.369, whole genome shotgun sequence.
ACCESSION   DADMHM010000363 DADMHM010000000
VERSION     DADMHM010000363.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1310)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1310)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1310
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.369"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            53..1242
                     /locus_tag="JN125_004246"
                     /pseudo
     CDS             53..1242
                     /locus_tag="JN125_004246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001390675.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="YccE family protein"
BASE COUNT          439 a          187 c          255 g          429 t
ORIGIN      
        1 catggaatta gttgcactgc aaataattat ttgaaaacag gcctggaacg atataaaaaa
       61 tgagtacgaa aaaaatcaaa catattcaat cacgcttttt gaaaacacac tggtgtgttt
      121 tatgcggtta tacaatgaac tcagacgtaa agtaaatgaa gaggatactc catgtctgga
      181 atgtgaatca ctagaaaaag aatttgagga aatgcagaat gataatgttc tatcattatt
      241 tatgagaaca ttgcgtacta atgatacaca aatttattca gggtttcagg aggtattaca
      301 tatactatac aatatgttca aaatgttgat attgttagag tgtccttgcc gggcagaggt
      361 tcagagtcta tcacagattt taaaggttat tattggtatg gctttatgga atatattgaa
      421 aacattactg cgtgtgatga tgttttttct gagtattgtt tagatgatga aaatatgagt
      481 atccagccag aacagataaa tacgccggga atatctgatt tagatactgg tattgatttg
      541 tctggcatat cttttattca gagtgaaatt aataaaacat atggattaaa atacgctcca
      601 gtagatggcg atggatattg tctgttaaga gccatactgg ttttaaaaga acatgagtat
      661 tcatgggcgc tgggcggcca taagacgcaa aagcaagtat acgaagagtt tattaaaatt
      721 gttgataaac aaacgatcga ggctcttgtt gatacgtcat tctataatct cagggaagat
      781 gtaaagacgt tatttggcgt taatctacaa tctgacaaca aaattcaggg gcagggtggt
      841 tttttatcat ggagtttttt gtcttttaaa aaagaattta ttgatagttg cttgaatgac
      901 aaaaaatgca tactgcattt acccgaattt atatttaatg ataacaaggt acgccttgtt
      961 ttagacaccg acccagagca gagggttaat gaggtgaaaa atttcctcac tgctctttca
     1021 gatagcattt tctcattatt tattgttaat agtaatatgg catcaatctc cttggggaat
     1081 gaatcctttt caacagatga cgaccttgag tatggttatt taataaacac tggcaatcat
     1141 tatgatgttt acctccctcc tgaacttttt gctcaggctt ataagttaaa aaataaggaa
     1201 atgaatgcgc aactcgacta tttaaatcgt tatgcaattt aatggcaaag gcatatgcta
     1261 aaaaccattg ttattagtct cacacttttt tattggtaaa tattgtctct
//
LOCUS       DADMHM010000364         1310 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.370, whole genome shotgun sequence.
ACCESSION   DADMHM010000364 DADMHM010000000
VERSION     DADMHM010000364.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1310)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1310)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1310
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.370"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(34..222)
                     /locus_tag="JN125_004247"
     CDS             complement(34..222)
                     /locus_tag="JN125_004247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873771.1"
                     /translation="MLTRKSIVPVLLSVGAEKLSQREWDWMKMLKPMDPPPAMVAASI
                     LERRGDTAALTRLQDTGG"
     gene            complement(237..584)
                     /locus_tag="JN125_004248"
     CDS             complement(237..584)
                     /locus_tag="JN125_004248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY8873772.1"
                     /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP
                     ETLRVWVRQHERDTGGGDGGLTTAERQRLKELERENREPRQPDGCKLKTAPVRPVVAA
                     RSAEYVCSEDLFY"
     gene            639..920
                     /locus_tag="JN125_004249"
                     /pseudo
     CDS             639..920
                     /locus_tag="JN125_004249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611684.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
     gene            complement(1165..>1310)
                     /locus_tag="JN125_004250"
     CDS             complement(1165..>1310)
                     /locus_tag="JN125_004250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY8873773.1"
                     /translation="NRNVVERCFGRLKEYRRIATRYDKTARNYLAMVKLGCIRLFYQR
                     LRN"
BASE COUNT          306 a          329 c          351 g          324 t
ORIGIN      
        1 tcggggagta aaagcggaca acatgaggac ggattaaccc ccggtatcct gtagccgggt
       61 aagggctgct gtgtcgccac ggcgctccag gatggaggcc gcgaccatcg caggtggtgg
      121 gtccatgggt ttgagcatct tcatccagtc ccattcacgt tgtgagagct tctcagcacc
      181 aacagagagc agaacgggaa ctatactttt gcgggtcaac ataagaggat gagtccttaa
      241 taaaacaggt cctcagagca tacatattct gcggagcgtg cggcaacaac aggacgaaca
      301 ggggcggttt tcaatttgca gccgtcaggc tgccgtggtt cacgattttc acgctccagc
      361 tctttcagac gctgacgttc agcggtggtg agccctccat caccgccccc ggtatcccgc
      421 tcatgctggc gaacccagac acgcagagtc tccggcgtac agccaatctt tggagcaatg
      481 gaacaaattg tcgcccattg tgagtcatat tcgccctgac tttccagaac catacggact
      541 gcccgttgac ggacttcggg ggaaaaacga gtatttttag tcatcctgtt tacctctttc
      601 tcaggaagtt tagtctccag gattcccggg gcggttcaga tagcctgaac gtgtactgtc
      661 gtaatggcca ggtggaaatc gacaacaaca tcggtgaaaa cgcgctgcga tcggtggcgg
      721 ttggaagaaa aaattatctc ttcttcggtt ctgacaacgg tggagaaagc gcggcgatta
      781 tctacagtct gctggtcacc tgcaaactga acggagtgga gccggaggac tggttgcgcg
      841 aagtgatcgt gaagctcaat gactggccgt cgaaccgagt gcatgaactg ctgccctgga
      901 acttctcagc tgtaaaataa tccttccgct acgtacttct ctgggcgctt accactcaac
      961 ggcatcgtca aaattatcaa agcgcagaac atagatttat catgtgtttt atggatggct
     1021 ttctccatca ggcatcgttc gtcacgggaa attggtgcta tgatcggcat tgatcagtcc
     1081 ggttggtgat ttgttttgat ttggcgattg atcagatcgc acaatccggg ctgagttccc
     1141 tctaagtgat ctaggttgtg tcccttaatt acgtaagcgt tgataaaaga gtcggatgca
     1201 gcccagtttc accatcgcca ggtaatttct cgccgttttg tcgtaacgcg tggcgatgcg
     1261 gcgatattct ttcagccgcc caaagcaccg ttcaacgaca ttacgattgc
//
LOCUS       DADMHM010000365         1287 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.371, whole genome shotgun sequence.
ACCESSION   DADMHM010000365 DADMHM010000000
VERSION     DADMHM010000365.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1287
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.371"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..>1287
                     /locus_tag="JN125_004251"
     CDS             <1..>1287
                     /locus_tag="JN125_004251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RHS repeat protein"
                     /protein_id="HAY8873774.1"
                     /translation="QGEAGLKRVVKKEHADGSVTQSQFDAVGRLRTQTDAAGRTTEYS
                     PDVVTGLITRITTPDGRASAFYYNHHSQLTSATGPDGLEIRREYDEWGRLIQETAPDG
                     DIIRYRYDNPHSDLPCATEDATGSRKTMTWSRYGQLLSFTDCSGYVTRYDHDRFGQMT
                     AVHREEGLSQYRAYDSRGQLIAVKDTQGHETRYEYNAAGDLTAVIAPDGSRNGTQYDA
                     WGKAIRTTQGELTRSMEYDAAGRVIRLTSENGSHTTFRYDVLDRLIQETGFDGRTQRY
                     HHDLTGKLIRSEDEGLVTHWHYDEADRLTHRTVNGETAEQWQYDKRGWLTDISHLSEG
                     HRVTVHYRYDEKGRLTGERQTVHHPQPEALLWQHETRHAYNAQGLANRCIPDSLPAVE
                     WLAYGSGYLAGMKLGDTPLVDFTRDRLHRETLRRFGR"
BASE COUNT          310 a          382 c          401 g          194 t
ORIGIN      
        1 gcagggtgaa gccgggctga agcgggtggt gaaaaaggaa cacgcggacg gcagcgtcac
       61 gcagagtcag tttgacgccg tgggcaggct caggacacag acggatgccg caggccggac
      121 aacagaatac agcccggatg tggtgacggg cctcatcacg cgcatcacca cgccggatgg
      181 cagggcatcg gcgttttact ataaccacca cagccagtta acgtcagcca ccgggcctga
      241 cgggctggaa atacgccggg aatatgatga atggggccgt ctgattcagg aaactgcccc
      301 tgacggcgat atcatccgct accgttatga taatccacac agtgacttac cctgcgcaac
      361 ggaagatgcc accggtagcc ggaaaaccat gacgtggagc cgttacggtc agttgctgag
      421 cttcaccgac tgttccggtt atgtaacccg ttatgaccat gaccgcttcg ggcagatgac
      481 ggcggtgcac cgcgaggaag ggctgagtca gtaccgcgca tacgacagcc gtggacagtt
      541 aattgccgtg aaagacacgc agggccatga aacgcggtat gaatacaacg ccgccggtga
      601 cctgaccgcc gtcattgccc cggacggcag cagaaacggg acacagtacg atgcgtgggg
      661 aaaggccatc cgtaccacgc agggcgagct gacgcgcagt atggaatacg atgctgcagg
      721 acgggtcatc cgcctgacca gtgaaaacgg cagccacacc accttccgtt acgatgtact
      781 cgaccggctg atacaggaaa ccggctttga cggccgcaca cagcgttatc accacgacct
      841 gaccggcaaa cttatccgca gcgaggatga ggggctggtc acccactggc actatgacga
      901 agcagaccgc ctcacgcacc gcaccgtgaa tggcgaaacc gcagagcagt ggcagtatga
      961 caaacgtggc tggctgacag acatcagcca tctcagcgaa gggcaccggg tgacggtgca
     1021 ttacaggtat gatgagaaag gccggctgac cggtgagcgc cagacggtgc atcacccgca
     1081 gccggaagca ctgctctggc agcatgagac cagacacgct tacaacgcgc agggactggc
     1141 gaaccgctgt ataccggaca gcctgcccgc cgtggaatgg ctggcctacg gcagcggtta
     1201 cctggcaggc atgaagctcg gcgacacacc gctggtggat ttcacccgcg accgcctgca
     1261 ccgggaaacg ctgcgccgct tcggccg
//
LOCUS       DADMHM010000366         1283 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.372, whole genome shotgun sequence.
ACCESSION   DADMHM010000366 DADMHM010000000
VERSION     DADMHM010000366.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1283)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1283)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1283
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.372"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..>1283
                     /locus_tag="JN125_004252"
     rRNA            <1..>1283
                     /locus_tag="JN125_004252"
                     /product="23S ribosomal RNA"
BASE COUNT          324 a          284 c          401 g          274 t
ORIGIN      
        1 ctgtccaacg ttaatcgggg cagggtgagt cgacccctaa ggcgaggccg aaaggcgtag
       61 tcgatgggaa acaggttaat attcctgtac ttggtgttac tgcgaagggg ggacggagaa
      121 ggctatgttg gccgggcgac ggttgtcccg gtttaagcgt gtaggctggt tttccaggca
      181 aatccggaaa actaaggctg aggcgtgatg acgaggcact acggtgctga agcaacaaat
      241 gccctgcttc caggaaaagc ctctaagcat caggtaacat caaatcgtac cccaaaccga
      301 cacaggtggt caggtagaga ataccaaggc gcttgagaga actcgggtga aggaactagg
      361 caaaatggtg ccgtaacttc gggagaaggc acgctgatat gtaggtgaag tccctcgcgg
      421 atggagctga aatcagtcga agataccagc tggctgcaac tgtttattaa aaacacagca
      481 ctgtgcaaac acgaaagtgg acgtatacgg tgtgacgcct gcccggtgcc ggaaggttaa
      541 ttgatggggt cagcgcaagc gaagctcttg atcgaagccc cggtaaacgg cggccgtaac
      601 tataacggtc ctaaggtagc gaaattcctt gtcgggtaag ttccgacctg cacgaatggc
      661 gtaatgatgg ccaggctgtc tccacccgag actcagtgaa attgaactcg ctgtgaagat
      721 gcagtgtacc cgcggcaaga cggaaagacc ccgtgaacct ttactatagc ttgacactga
      781 acattgagcc ttgatgtgta ggataggtgg gaggctttga agtgtggacg ccagtctgca
      841 tggagccgac cttgaaatac caccctttaa tgtttgatgt tctaacgttg acccgtaatc
      901 cgggttgcgg acagtgtctg gtgggtagtt tgactggggc ggtctcctcc taaagagtaa
      961 cggaggagca cgaaggttgg ctaatcctgg tcggacatca ggaggttagt gcaatggcat
     1021 aagccagctt gactgcgagc gtgacggcgc gagcaggtgc gaaagcaggt catagtgatc
     1081 cggtggttct gaatggaagg gccatcgctc aacggataaa aggtactccg gggataacag
     1141 gctgataccg cccaagagtt catatcgacg gcggtgtttg gcacctcgat gtcggctcat
     1201 cacatcctgg ggctgaagta ggtcccaagg gtatggctgt tcgccattta aagtggtacg
     1261 cgagctgggt ttagaacgtc gtg
//
LOCUS       DADMHM010000367         1279 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.373, whole genome shotgun sequence.
ACCESSION   DADMHM010000367 DADMHM010000000
VERSION     DADMHM010000367.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1279)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1279)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1279
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.373"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..>1279
                     /locus_tag="JN125_004253"
     CDS             <1..>1279
                     /locus_tag="JN125_004253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde ferredoxin oxidoreductase"
                     /protein_id="HAY8873775.1"
                     /translation="AKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCV
                     AAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKR
                     LNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPA
                     GNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGN
                     TCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYS
                     KGVFKRVLPAEEYAEIHWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWN
                     LGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPL
                     KLQREVAKELFGSEDAYDETKNYTPINDAKIKYA"
BASE COUNT          341 a          270 c          351 g          317 t
ORIGIN      
        1 gcgaaatcac cggtatggct gaagattaaa gatgacaaag ttagcctgga aaaagccgat
       61 ttcttatggg gaaaagggac gcgcgcaacg acggaagaaa tttgtcgatt gaccagtccg
      121 gaaacctgtg tggcggctat tggtcaggct ggggaaaacc ttgttcctct ctctggcatg
      181 ttgaatagcc gtaaccacag cggcggtgcg ggaactggcg caattatggg ttcgaaaaac
      241 ctgaaagcga ttgcggttga agggacgaaa ggggtcaaca ttgccgatcg tcaggagatg
      301 aagcgtctca acgattacat gatgactgaa cttattggtg cgaataacaa ccatgtcgtg
      361 ccaagtacgc cgcaatcgtg ggcagagtat tcagatccca agtcacgttg gacagcacgt
      421 aaagggctgt tttggggcgc ggctgaaggt ggtccgattg aaacggggga aattccggca
      481 ggcaatcaga acacggtcgg ctttcgtacc tataaatccg tttttgactt aggtccggcg
      541 gcagagaaat acacagtaaa aatgagtggc tgccactctt gcccgatccg ttgtatgacc
      601 caaatgaata ttcctcgggt gaaagagttt ggcgtgccca gcacaggtgg taacacttgt
      661 gtagccaact ttgtccatac caccatcttt ccgaacggtc cgaaagattt tgaagataaa
      721 gacgatggcc gtgtgattgg taacttggtt ggtctgaatt tgttcgatga ctacggccta
      781 tggtgtaact acgggcagtt gcatcgcgac tttacttatt gttacagcaa aggggtgttc
      841 aagcgtgttc tgcctgctga agagtatgcg gaaattcact gggatcaact ggaagcgggt
      901 gacgttaatt tcattaaaga tttttactac cgtctggcgc atcgtgtggg tgagctgagt
      961 cacctggctg atggttcata tgccatcgca gaacgctgga atttgggtga agagtactgg
     1021 ggctacgcga aaaataaact ctggtcgccg tttggctatc cggttcacca tgccaatgaa
     1081 gcgtcagcgc aggtcggttc cattgttaac tgtatgttca accgtgactg catgacacat
     1141 acccatatca actttattgg ttccggcttg ccattgaaac tgcaacgtga agtggcgaaa
     1201 gagctttttg gttctgaaga tgcctacgat gaaaccaaaa actacacgcc aatcaatgac
     1261 gcaaaaatta aatatgcta
//
LOCUS       DADMHM010000368         1273 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.374, whole genome shotgun sequence.
ACCESSION   DADMHM010000368 DADMHM010000000
VERSION     DADMHM010000368.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1273)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1273)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1273
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.374"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            605..>1273
                     /locus_tag="JN125_004254"
     CDS             605..>1273
                     /locus_tag="JN125_004254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2686 family protein"
                     /protein_id="HAY8873776.1"
                     /translation="MSMPLSNALQSQIITDNHFLHHPKVDNKLTREYARMDTENIYLL
                     PLTRGNNHNYDGKSVVEIRKLNIGKQSWPFNYATDTCREFNGITTTGRMLYRNLKITS
                     ALDEIYGGICKKAHAATELAEGLRLNLFMKSPFDPVEDYTVHEITLGPGCNVPGYAGT
                     TIGYISTLPASQAKRWTNEQPRIDIYIDQIITVSGVANSSGFALAALLNANIGMGNDP
                     IIGIE"
BASE COUNT          439 a          235 c          204 g          395 t
ORIGIN      
        1 gctcattttc catagccatt cccttttgtt cattacatcc atgtcagtct gagacaggcc
       61 tgaatcctgt cagcaaagta taaaacctta cttgcctatg aatatctact gacttttcag
      121 gaaaaaagtc atgatttgat aaaaatcatc aaactcaaaa aaaaaccgct agtatattct
      181 gaatattccg aatagttacg tagatgaaaa tacttgtcac cgccgctact taattccggt
      241 gggaaattat ttatttccgc ataatcggcc atgtattatt tgaaacaatt agtttgtaaa
      301 taatataaat tgataacata tcaaatacat caaaaatacc atttataggc attattaata
      361 tagacatcaa tatagcaaca tcaaattcca attagtaata agaaatgctt tttaattgca
      421 tgaaaataat ttcaaatgag cgttttttga tactttagag tgtttcctac cctttaatat
      481 caccgtgtag agttgatatc actacaacag aaacatgcat gtcatttttt tacttctttt
      541 ttactacaga aaaatttatc tatttttcta aacatcggtg aaatactcat aaaaggtaac
      601 tattatgtct atgccattaa gcaatgccct tcagagtcaa attattacag ataatcactt
      661 ccttcatcat ccaaaagtcg acaataagtt aacacgtgaa tatgcacgca tggatacgga
      721 aaatatctat cttctgcctc ttactcgtgg aaataaccat aattacgatg gaaaaagcgt
      781 tgtcgaaatt agaaaactta atattggcaa acagtcctgg ccatttaatt atgcgacaga
      841 tacatgcaga gaattcaatg gtattacaac aacaggacgt atgctctatc gaaacttgaa
      901 aatcacctca gctttagacg aaatatatgg tggtatatgt aaaaaggcgc atgctgctac
      961 agagttagca gaaggtttac ggctaaattt atttatgaag agccctttcg atcctgttga
     1021 ggactataca gttcatgaaa taacattagg ccctggttgc aatgttcctg gttatgccgg
     1081 aaccacgata ggatatattt caacccttcc agcttctcag gcaaaaagat ggaccaatga
     1141 gcagccaaga attgatatct atattgatca gataataact gtctcagggg tggcaaattc
     1201 ttccggattc gcccttgccg cattacttaa tgctaatatt ggaatgggaa atgacccaat
     1261 aattggtata gaa
//
LOCUS       DADMHM010000369         1235 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.375, whole genome shotgun sequence.
ACCESSION   DADMHM010000369 DADMHM010000000
VERSION     DADMHM010000369.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1235)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1235)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1235
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.375"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(266..1234)
                     /gene="astE"
                     /locus_tag="JN125_004255"
     CDS             complement(266..1234)
                     /gene="astE"
                     /locus_tag="JN125_004255"
                     /EC_number="3.5.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinylglutamate desuccinylase"
                     /protein_id="HAY8873777.1"
                     /translation="MDNFLALTLTGKKPVITEREINGVRWRWLGDGVLELTPLTPPQG
                     ALVISAGIHGNETAPVEMLDALLGAISHGEIPLRWRLLVILGNPPALKQGKRYCHSDM
                     NRMFGGRWQLFAESGETCRARELEQCLEDFYDQGKESVRWHLDLHTAIRGSLHPQFGV
                     LPQRDIPWDEKFLTWLGAAGLEALVFHQEPGGTFTHFSARHFGALACTLELGKALPFG
                     QNDLRQFAVTASAIAALLSGESVGIVRTPPLRYRVVSQITRHSPSFEMHMASDTLNFM
                     PFEKGTLLAQDGEERFTVTHDVEYVLFPNPLVALGLRAGLMLEKIS"
BASE COUNT          349 a          323 c          281 g          282 t
ORIGIN      
        1 attaacttta ctgactttag cgtcaattaa tcagagcaac ggtaaaacaa tgaaagtgta
       61 aaaaacactt ttgcgccaat tatggagaaa aaaagaaaat ttgatggaga gtgatgagag
      121 aatattacaa cacaatgatt ttgcagagat tatgaagaac tataccggat gactggtgat
      181 aaataaagca aataaccagg attaatctgt attaatttat aagaaagcaa cttaataccc
      241 gcagaatgat ttctgcgggt aagtattagc ttattttttc gagcattaat cccgcgcgta
      301 atcccaacgc taccaacgga ttagggaata acacatactc tacatcatgg gttacggtaa
      361 aacgttcctc tccgtcctgc gccagcaatg ttcctttctc aaacggcata aaattcagcg
      421 tgtcacttgc catatgcatt tcgaaggacg gcgagtggcg agtaatttgc gaaaccaccc
      481 gataacggag cggcggtgtt ctcacgatac cgacactctc accagatagc agcgcagcaa
      541 ttgcgctggc agttactgca aactggcgaa gatcgttttg cccaaagggc aacgctttgc
      601 caagttccag cgtacaggcc agcgcgccaa aatgtctggc gctgaaatgg gtaaacgtac
      661 caccaggttc ctgatggaac accagcgcct ccagccccgc cgcacccagc cacgtcagaa
      721 atttctcgtc ccagggaatg tcgcgttgcg gtaatacacc gaactgcgga tgcaaggagc
      781 cacgaattgc ggtatgtaga tcaaggtgcc agcgcacaga ttctttgccc tggtcataaa
      841 aatcttccag gcactgttcc agttcgcgcg cccgacaggt ttctccgctt tcagcaaata
      901 gctgccaacg accgccaaac attcgattca tatcgctatg gcaataacgt ttcccttgct
      961 tcagcgcagg aggattcccg aggatcacca gcaaccgcca acgtaacggg atctcgccgt
     1021 gagatatcgc gccaagcaac gcgtccagca tttccacagg tgccgtctca ttaccgtgga
     1081 tccccgcaga aatcaccagc gcgccttgcg gtggcgttaa tggcgtcagt tccagcacac
     1141 catcgcccag ccagcgccag cgaacgccgt tgatttctcg ctcggtgata accggttttt
     1201 tacccgttaa ggtcagagca agaaaattat ccatt
//
LOCUS       DADMHM010000370         1234 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.376, whole genome shotgun sequence.
ACCESSION   DADMHM010000370 DADMHM010000000
VERSION     DADMHM010000370.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1234)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1234)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1234
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.376"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..752)
                     /gene="ipaH3"
                     /locus_tag="JN125_004256"
     CDS             complement(<1..752)
                     /gene="ipaH3"
                     /locus_tag="JN125_004256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector E3 ubiquitin-protein ligase IpaH3"
                     /protein_id="HAY8873778.1"
                     /translation="MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGE
                     NRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASL
                     EYLDACDNHLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPT
                     SLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR
                     ITHIPENILSLDPTCTIILEDNPLSSRIRESLS"
BASE COUNT          365 a          205 c          294 g          370 t
ORIGIN      
        1 gacagagact ccctgatccg tgaggacaga ggattgtctt cgaggatgat agtgcaggtc
       61 ggatcaaggc taagtatatt ttccggaatg tgtgtgatgc gattctcgcg gcaccggaaa
      121 aatatctcgg tttcctctga gtgatgattt cttacaggta cggctggtag gctttccaga
      181 agattagtac ttacatcgag cgcttccagt gattcaggta actcaggaag aaatgtcagc
      241 tggttatttc ttactgagag cacttccagc gatgtaggta attcaggaag catggttagc
      301 tgattgttat ctgcattaat atattccagc aatgcaggca attcaggaag catggttagt
      361 tggttgttat ctacatcaag atgtttcaga gatgcgggta attcaggaag tgttgacagg
      421 tgattgtcac aggcgtcaag gtattccagc gatgctggca attctggtaa tgatattagg
      481 gcattctgag taatttccag aacagtgatt tgaggtggta agttgtcagg tagcgaggac
      541 agatttaaac gattcagttg aagctcactg aactgattga tgagacattc tttaagtagg
      601 gagaccgctt cattccgatt ttcaccgggg agcgcttgtt tttcccattt atcccatgct
      661 gaaaagtaat cagcatatgt accggaaata gtgttataaa aagaattttg ggacaatgaa
      721 aagttattat ttatcggtaa catgatggac attcagttaa agccgatgga caaatggctt
      781 tgttaaaaga aataagtagg agtttttatg aagttcattc catgaaatga acttcagcac
      841 ttttttatta taaaaggaca aacaaaattg gctgtaaaaa aacgatactg tttcagttaa
      901 ctgtgaatag cttgcttgca ccgtattgtt cttgtttttc ggttagttaa acatcgtact
      961 tcatatttga acgttctgcc ggaatgcatt atcaatagag gtaaagtcgc aaccccaaat
     1021 cgtaaaggaa accgtagcac gtcgtatgca agaacgtgcc acggctggct gatggatgtt
     1081 cgatagcgcg agtttgaatg aaaatcagcc ggagatgatt ttacataatt gctacggaat
     1141 tattcaatac aggaattgct tgcgtctgca tggattgacc tgaaattttc ccgaaaattt
     1201 ctctaaaaaa ctcgaaaaaa atggtaactg gttg
//
LOCUS       DADMHM010000371         1230 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.377, whole genome shotgun sequence.
ACCESSION   DADMHM010000371 DADMHM010000000
VERSION     DADMHM010000371.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1230)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1230)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1230
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.377"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            312..>1230
                     /gene="kgtP"
                     /locus_tag="JN125_004257"
     CDS             312..>1230
                     /gene="kgtP"
                     /locus_tag="JN125_004257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoglutarate permease"
                     /protein_id="HAY8873779.1"
                     /translation="MAESTVTADSKLTSSDTRRRIWAIVGASSGNLVEWFDFYVYSFC
                     SLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLLSVCM
                     MCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGF
                     YASFQYVTLIGGQLLALLVVVVLQHTMEDAALREWGWRIPFALGAVLAVVALWLRRQL
                     DETSQQETRALKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGM
                     HANVASGIMTAALFVFMLIQPLIGALSDKI"
BASE COUNT          298 a          286 c          296 g          350 t
ORIGIN      
        1 aaaggccatc cgtcaggatg gcctttttgc attggcgcag aaaaaatgcc tgatgcgacg
       61 ctgcgcgtct tatactccca catatgccag attcagcaac ggatgcggtt tccccaactt
      121 gcctacttcc atacgtgtcc tccttaccag aaatttatcc ttaagctcct caataaccat
      181 tttcctgcta actaaattca tggttaatgt tgcataataa tacgcaacaa atgtataaca
      241 ttttctttac caaaagaaat aaacaaaagc gaccaacaaa agcatcggat tacggcagga
      301 gacataatgg catggctgaa agtactgtaa cggcagacag caaactgaca agtagtgata
      361 ctcgtcgccg catttgggcg attgtggggg cctcttcagg taatctggtc gagtggttcg
      421 atttctatgt ctactcgttc tgttcactct acttcgccca cattttcttc ccttccggga
      481 acacgacgac tcaactacta caaacagcag gtgtttttgc tgcgggattc ctgatgcgcc
      541 caataggcgg ttggctattt ggccgcatag ccgataaaca tggtcgcaaa aaatcgatgc
      601 tgttatcggt gtgtatgatg tgtttcggat cgctggttat cgcctgcctc ccaggttatg
      661 aaactatagg tacgtgggct ccggcattat tgcttctcgc gcgtttattt cagggattat
      721 ccgttggcgg agaatatggc accagcgcca cctatatgag tgaagttgcc gttgaagggc
      781 gcaaaggttt ttacgcatca tttcagtatg tgacgttgat cggcggacaa ctgctagccc
      841 tactggttgt cgtggtttta caacacacca tggaagacgc tgcactcaga gagtggggat
      901 ggcgtattcc tttcgcgtta ggagctgtgt tagctgttgt ggcgttgtgg ttacgtcgtc
      961 aattagatga aacttcgcaa caagaaacgc gcgctttaaa agaagctgga tctctgaaag
     1021 gattatggcg caatcgccgt gcattcatca tggttctcgg ttttaccgct gcgggctccc
     1081 tttgtttcta taccttcacc acttatatgc agaagtatct ggtaaatact gcggggatgc
     1141 atgccaacgt ggcgagtggc attatgactg ccgcattgtt tgtattcatg cttattcaac
     1201 cactcattgg cgcgctgtcg gataagattg
//
LOCUS       DADMHM010000372         1226 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.378, whole genome shotgun sequence.
ACCESSION   DADMHM010000372 DADMHM010000000
VERSION     DADMHM010000372.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1226)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1226)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1226
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.378"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..>1226
                     /locus_tag="JN125_004258"
     CDS             <1..>1226
                     /locus_tag="JN125_004258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein J"
                     /protein_id="HAY8873780.1"
                     /translation="PPEGFESSGAETGLGVEVTKAKPVTRTITSANIDRLRVTFGVQS
                     LVQTTSKGDRNPSSVRILIQLQRNGRWVTEKDVTINGKTTSQFLASVILDNLPPRPFN
                     IRMVRETADSTTDQLQNRTLWSSYTEIIDVKQCYPNTAIVGMQVDAEQFGGQQMTVNY
                     HIRGRIIQVPSNYDPEKRTYSGIWDGSLKPAYSNNPAWCLWDMLTHPRYGMGKRLGAA
                     DVDKWALYAIGQYCDQTVPDGFGGTEPRMTFNAYLAQQRKAWDVLSDFCSAMRCMPVW
                     NGQMLTFVQDRLSDVVWPYTNSDVVVDDNGVGFRYSFSALKDRHTAVEVNYTDPQNGW
                     QTSTELVEDPEAILRYGRNLLKMDAFGCTSRGQAHRAGLWVIKTELLETQTVDFTLGS
                     QGLRHTPGDIIEICDN"
BASE COUNT          272 a          333 c          391 g          230 t
ORIGIN      
        1 ccaccggaag gctttgagtc ctccggagct gaaaccggac tgggcgtgga agtgacgaag
       61 gcaaaaccgg tgacgcgcac cattacgtcc gcgaacattg accgcctgcg ggttaccttc
      121 ggggtgcagt cactggtgca gaccacgtca aagggcgacc gtaatccttc ctctgtccgg
      181 attctgattc agttacagcg taatggccgc tgggtgacgg aaaaggacgt caccattaac
      241 ggcaagacca cctcacagtt cctggcctcg gtgattctgg ataatctgcc tccccgcccc
      301 tttaacatcc ggatggtcag ggagacggcg gacagcacca cggaccagct gcagaacaga
      361 acgctgtggt cgtcatacac cgaaatcatc gatgtgaaac agtgctaccc gaacacggcc
      421 attgtgggga tgcaggtgga tgcggagcag tttggtggtc agcagatgac ggtgaactac
      481 catatccgcg gtcgcatcat ccaggtgccg tcaaactatg acccggaaaa acgcacgtac
      541 agtggtatct gggacggcag tctgaaaccg gcatacagca acaacccggc ctggtgcctg
      601 tgggacatgc tgactcaccc gcgctacggc atgggaaaac gtctgggggc ggcggatgtg
      661 gacaagtggg cgctgtatgc catcgggcag tactgcgacc agacggtccc ggatggtttc
      721 ggggggaccg agccgcggat gacctttaat gcgtacctgg cacaacagcg taaggcgtgg
      781 gacgttctca gtgatttctg ctctgcgatg cgctgtatgc cggtatggaa cggccagatg
      841 ctgacgtttg ttcaggaccg cctgtcggat gtggtgtggc cgtacaccaa cagcgatgtg
      901 gtggtggatg ataacggcgt ggggttccgc tacagcttca gtgccctgaa ggaccggcac
      961 acggcggtgg aggtgaatta caccgacccg cagaacggct ggcagacctc cacggaactg
     1021 gtggaagacc cggaagccat actgcgctac gggcgcaatc tgctgaagat ggacgcgttc
     1081 ggctgtacca gccgcggtca ggcccaccgt gccggactgt gggtgataaa gaccgaactg
     1141 ctggaaacgc agacggtgga cttcacgctc gggtctcagg ggctgcggca cacacccggt
     1201 gacattattg aaatctgtga taatga
//
LOCUS       DADMHM010000373         1222 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.379, whole genome shotgun sequence.
ACCESSION   DADMHM010000373 DADMHM010000000
VERSION     DADMHM010000373.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1222)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1222)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1222
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.379"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(1..887)
                     /locus_tag="JN125_004259"
                     /pseudo
     CDS             complement(1..887)
                     /locus_tag="JN125_004259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416300.2"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
     gene            complement(888..974)
                     /locus_tag="JN125_004260"
                     /pseudo
     CDS             complement(888..974)
                     /locus_tag="JN125_004260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001459804.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
     gene            complement(1068..>1222)
                     /locus_tag="JN125_004261"
     CDS             complement(1068..>1222)
                     /locus_tag="JN125_004261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HAY8873781.1"
                     /translation="YDVPEQMTISIGTVFSTGDTRNISLVMTEADKALREAKSEGGNK
                     VIIHHI"
BASE COUNT          336 a          281 c          289 g          316 t
ORIGIN      
        1 ccgcccggta agtcatggac gtaactgaca tactggaaca gattatcttc gctctggttg
       61 atgataatgt cgcgccccga atcggtatcg gttagcgtga cattgagaaa acgccagagg
      121 agagggcggt catgagtgta aaagatattc cgcaaattgt ttttgttaat atccagcagc
      181 acaatccctt ttagctgccc tgcaacatac accggcgtca gcaaactcat cacgttctgt
      241 ttagtacgct gatcctggta aatgctcgac aatacggtac gcccggtaaa taccttttca
      301 atatctttgc gatcgatacc aatacttcct gactgcagga aggaccagtt attcatcgca
      361 aagtattcaa cattaaccgg ctcataaaaa tagacatagc ggtcattgag atcgagataa
      421 tagtgaaatt tctcttcggc catcccaaga cctgaaccgt aatcatccta gtggcggttg
      481 ccttccactg cctgatcaaa agcgggtaat agtgctgcag cttccacaat tgtgtcgcag
      541 tcagtggatg cggtttgtag tgtgccgcgt aagcccgggt atttatgagc agtcaggttt
      601 aagccatggg tattattggc agactcaaaa gcctcgcaga tggcgcgccg ctgttctggc
      661 gacacttccg acagctcagc agcgagagcg cgcatcacat gcgcggcaat actctgattc
      721 tgatacttat cataaagaaa ggaggagtct gctttctgca cgatatagcg cagataggca
      781 ctcattgctc tgtcgctggc gacaagttca aaaataagga aggaagatgt cagcacaatg
      841 acacttgcgg cgataaaatg ccggagcatt ctatggtgca atttcatgat aaatggcact
      901 ccttcggtta gtgaaacgag aaaaccagat aaagttcgat tgcggcctgg cacaggggcg
      961 ctaattatac tcatctctgc gccgctgggg aggggaaatt taggggtaat agtaataaat
     1021 tgtatgcaaa agccacgcaa aaagcatggc tctgaatatt tttgcactta aatatgatga
     1081 ataatcactt tgttgccccc ctcgcttttc gcttcgcgta aggctttatc tgcttccgtc
     1141 atgacaagcg agatattacg cgtgtcaccc gttgaaaaaa ccgtgccaat actgatggtc
     1201 atttgttcag gaacatcata tc
//
LOCUS       DADMHM010000374         1207 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.380, whole genome shotgun sequence.
ACCESSION   DADMHM010000374 DADMHM010000000
VERSION     DADMHM010000374.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1207)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1207)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1207
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.380"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(48..1190)
                     /locus_tag="JN125_004262"
     CDS             complement(48..1190)
                     /locus_tag="JN125_004262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000017332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate porin"
                     /protein_id="HAY8873782.1"
                     /translation="MSGWFDLTLNQRVYNQDGKTANAVVTYDGNVGEQYNDAWFGDSA
                     NENIMQFSDIYLTTRGFLPFAPEADFWVGKHKLPQYEIQMLDWKTLTTDVAAGVGIEN
                     WALGVGLFDMSLSRDDVDVYSRDFSRTSQMNTNSVDVRYRNIPLWDDATLSLMAKYSA
                     PNKTDQQQDNENDNSYFEMKDSWMLTSVLRQNLQRDTFNEFTLQVDNNSYASSFASFS
                     DASNTMAHGRYYYGDHTNGIAWRLISQGEMYLTDNIIMANALVYSHGEDVYSYESGAH
                     SDFDSIRTVIRPAWIWNTWNQTGLELGWFKQQNKTQQGVTLNESAYKTTLWHALKVGE
                     SILGSRPEIRFYGTYINILDNELSNFKFNENSKDEFMAGIRAEVWW"
BASE COUNT          345 a          295 c          220 g          347 t
ORIGIN      
        1 aaaccttttt taaatcctga catacacaac tccttaacta aaatagatta ccaccagact
       61 tccgcccgga tgccggccat aaactcgtct ttgctgttct cattaaactt aaaattcgat
      121 aattcgttat ccagaatatt gatatacgtt ccatagaagc gaatttctgg tcgtgaacct
      181 aaaatgcttt cacccacttt caatgcatgc cagagtgtcg ttttataagc cgattcattt
      241 agtgttacac cctgctgagt tttgttctgt tgcttaaacc agcctaattc aagccccgtc
      301 tgattccatg tattccagat ccaggccggt cttattacag tgcgaatact gtcaaaatca
      361 ctatgagcac cactttcata actataaaca tcttcgccgt gagaatagac aagcgcgtta
      421 gccataataa tattgtcagt aagatacatc tcgccctgag agattaaacg ccaggcgatc
      481 ccattggtat gatcaccata gtaatagcga ccatgcgcca tcgtattact ggcatctgag
      541 aaactggcaa aactgctggc ataggaatta ttgtcaacct gtaacgtaaa ttcattaaac
      601 gtatcgcgtt gcaggttttg ccgtaaaaca gaagtcagca tccagctatc tttcatttca
      661 aaataactgt tgtcattttc gttatcttgt tgttgatccg ttttattagg tgcggaatat
      721 ttagccatta atgataatgt cgcatcatcc cataacggga tattgcgata acgaacatcc
      781 acagaattgg tattcatctg gctggtacgc gaaaaatcac gagagtaaac atcgacatca
      841 tcacggctta aggacatatc aaacagccct acaccaagtg cccagttttc aatccccaca
      901 cccgcggcga catccgtggt taaggttttc cagtccagca tctggatctc atattgcggg
      961 agtttatgtt tgccgaccca gaagtctgcc tctggtgcga agggtaaaaa acctcgcgtt
     1021 gtcaggtaaa tatcgctgaa ctgcatgata ttttcattgg cactgtcacc aaaccaggca
     1081 tcgttatact gctcacccac gttgccatca taggtaacga ccgcatttgc cgttttaccg
     1141 tcctgattat aaacacgctg atttaaggtc aggtcaaacc aaccgctcat ctcattacca
     1201 aaacgtc
//
LOCUS       DADMHM010000375         1200 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.381, whole genome shotgun sequence.
ACCESSION   DADMHM010000375 DADMHM010000000
VERSION     DADMHM010000375.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1200)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1200)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1200
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.381"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            20..391
                     /locus_tag="JN125_004263"
     CDS             20..391
                     /locus_tag="JN125_004263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HAY8873783.1"
                     /translation="MVWVGKDVTGIEPRNASVIEVPDITANRRITAPGYWFYRNDEFV
                     FDYRLKAEDERDALLAQVRARTGEWEEDLLLGLISDEDKEKLKACRIYAKSLQAMDFS
                     TITDKATYNAINWPERPDAAA"
     gene            378..>1200
                     /locus_tag="JN125_004264"
     CDS             378..>1200
                     /locus_tag="JN125_004264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001135852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY8873784.1"
                     /translation="MPQLKGVIKTPTGEPLDGATITLTSIHNRAGILKSVFSHVTTQN
                     GEYDFPVLPGVYSVRLTQSTRRLSEIGVIRVYEDSTDGSLNDFLGATNIDLRPESLKK
                     FEELAQQAQQSAGSAAGNARQTAQDVTAAATARDDAQRFAEKARQDATVTAENRKATA
                     EDVTSTGANAAAAGQSAQDAAGYARAAEQAKNDIDAALTGTLKMANHLSEIAAAGEKA
                     QQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPEDVIRFDTKSDF"
BASE COUNT          325 a          308 c          344 g          223 t
ORIGIN      
        1 ttacaccgga gacgggcgcg tggtgtgggt cggtaaggat gtgacaggca ttgaaccccg
       61 taacgccagt gttattgaag ttcctgatat taccgccaac cgccgcatta ccgcgccggg
      121 ttactggttt taccgcaatg atgaatttgt ctttgactac agactcaaag cggaagatga
      181 gcgtgatgcc cttctggctc aggtcagagc ccggacaggg gaatgggaag aagacctgct
      241 gctggggtta atcagcgacg aagataaaga aaagctgaaa gcctgtcgta tttacgcgaa
      301 atcgctgcag gcgatggatt tcagcaccat cacagataaa gccacatata acgccatcaa
      361 ctggccggag cgtcccgatg ccgcagctta aaggtgtgat taaaacgccc acgggagaac
      421 cgctggacgg cgcaaccatt acactaacct ccatacacaa ccgtgcaggg attctgaaaa
      481 gtgttttcag ccatgtcacc acacagaacg gggaatatga cttccccgtt ctgccgggtg
      541 tgtacagcgt tcgcctgaca caaagcacac ggcgcctttc agaaatcggt gtcatccgcg
      601 tttatgaaga ttcaacggac ggttcgctga atgattttct gggcgcaact aatattgacc
      661 tgcgtccgga atccctgaag aaattcgaag agctggcgca acaggcgcag cagagtgccg
      721 ggagcgcagc cggaaacgca cggcagacgg cgcaggatgt gacggcagcc gcaacggccc
      781 gtgatgatgc acaacgtttt gcggagaaag cccgacagga tgcaaccgtc acagctgaga
      841 acagaaaggc cactgcggaa gatgtgacaa gcacaggagc aaatgcagcc gcagccggac
      901 agagcgcaca ggatgccgca ggttatgccc gcgcagcaga acaggccaaa aatgacattg
      961 atgctgcgct gaccggcact ctgaaaatgg ctaaccatct gtcagaaatc gcagcagcag
     1021 gcgaaaaggc acaacagaag tcccgggata atctggggct gaaaagtgcg gccacgatgg
     1081 aagcacagag cgacatttac gaccggacaa aaggccgtct ggcgataccc ggcgcattcg
     1141 gctttgggtg tgcttttctg cctgaagatg ttatccgttt tgacactaag agtgatttcc
//
LOCUS       DADMHM010000376         1199 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.382, whole genome shotgun sequence.
ACCESSION   DADMHM010000376 DADMHM010000000
VERSION     DADMHM010000376.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1199)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1199)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1199
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.382"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            54..908
                     /locus_tag="JN125_004265"
                     /pseudo
     CDS             54..908
                     /locus_tag="JN125_004265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416251.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
     gene            959..>1199
                     /gene="chbA"
                     /locus_tag="JN125_004266"
     CDS             959..>1199
                     /gene="chbA"
                     /locus_tag="JN125_004266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS N,N'-diacetylchitobiose transporter subunit
                     IIA"
                     /protein_id="HAY8873785.1"
                     /translation="MMDLDNIPDTQTEAEELEEVVMGLIINSGQARSLAYAALKQAKQ
                     GDFAAAKAMMDQSRMALNEAHLVQTKLIEGDAGEGK"
BASE COUNT          284 a          300 c          313 g          302 t
ORIGIN      
        1 aagcacctta aaatcaccat catacactaa atcagtaagt tggcagcatt acccgcaatt
       61 gggtcattaa actgcccgac agcgtacctg cttcagtatc gcgttccttc tcggcattaa
      121 ttcccggctt tattattctt tccgttatgg ggattattgc ctgggcgttg aatacctggg
      181 gcaccaactt ccatcagatc attatggata ccatctcaac cccactggca tcgttgggta
      241 gcgtggtggg ctgggcctat gtgatctttg ttccactgct ctggttcttc ggtattcatg
      301 gcgcgctggc gctgaccgca ctggacaacg gcattatgac gccgtgggcg ctggaaaata
      361 tcgcgaccta tcagcaatat ggttccgtcg aagcggcgct ggcagccggt aagaccttcc
      421 atatctgggc caagccgatg ctggactcct ttattttcct tgggggcagt ggtgcgactt
      481 taggcctgat cctggctatc tttatcgcct ctcgccgtgc tgattatcgt caggtggcaa
      541 aactggcgct gccgtccggc atcttccaga ttaacgaacc gattctgttt ggtctgccaa
      601 ttatcatgaa cccggtgatg tttatcccgt ttgtactggt acaaccgatt ctggcggcaa
      661 tcaccctcgc agcgtactac atgggcatta ttcctccggt gaccaatatt gcaccgtgga
      721 ccatgccaac cggtctggga gccttcttta acaccaacgg tagcgtcgct gcattgctgg
      781 tcgcactctt caaccttgat atcgcaacgt taatttatct gccctttgtt gtggtggcta
      841 acaaagcgca aaacgcgatt gataaagaag agagcgaaga agatatcgct aacgccctga
      901 aattttaatc gatgccggta cggttaatcg tgccggtaag aagagagagg aacgatgtat
      961 gatggatctc gataacattc ccgatacgca aacagaagct gaagagctgg aagaagtggt
     1021 gatggggctt atcatcaact ccggacaagc gcgcagcctg gcgtatgcgg cactgaaaca
     1081 ggcgaagcag ggcgattttg ccgcagcaaa agccatgatg gatcagtcac ggatggcatt
     1141 gaatgaagcg catctggtac agacgaaact gattgaaggc gatgcgggcg aaggtaaga
//
LOCUS       DADMHM010000377         1199 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.383, whole genome shotgun sequence.
ACCESSION   DADMHM010000377 DADMHM010000000
VERSION     DADMHM010000377.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1199)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1199)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1199
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.383"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..755)
                     /gene="ipaH4.5"
                     /locus_tag="JN125_004267"
     CDS             complement(<1..755)
                     /gene="ipaH4.5"
                     /locus_tag="JN125_004267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="T3SS effector E3 ubiquitin-protein ligase
                     IpaH4.5"
                     /protein_id="HAY8873786.1"
                     /translation="MKPINNHSFFRSLCGLSCISRLSVEEQCTRDYHRIWDDWAREGT
                     TTENRIQAVRLLKICLDTREPVLNLSLLKLRSLPPLPLHIRELNISNNELISLPENSP
                     LLTELHVNGNNLNILPTLPSQLIKLNISFNRNLSCLPSLPPYLQSLSARFNSLETLPE
                     LPSTLTILRIEGNRLTVLPELPHRLQELFVSGNRLQELPEFPQRLKYLKVGENQLRRL
                     SRLPQELLTLDVSNNLLTSLPENIITLPICTNV"
BASE COUNT          341 a          215 c          259 g          384 t
ORIGIN      
        1 ttaacattcg tacaaatggg caatgtgatt atattttcgg gtaatgaagt tagtaggtta
       61 ttggaaacat ccagtgtcaa tagttcttgc ggtaatctgg ataatctgcg tagttgattt
      121 tcacctacct tcaaatattt taagcgctga ggaaattctg gtagttcctg tagtctgttg
      181 ccggaaacaa agagttcttg tagtctatga ggcaattcag gcaagacagt aaggcgatta
      241 ccttcaatac gtaatattgt tagcgttgat ggaagctctg gtaacgtctc cagactatta
      301 aaacgtgccg agagtgattg taaatatggt ggtaatgatg gcagacatga caaatttcga
      361 ttgaatgaaa tattaagctt aatcagttga gatggaagtg tcgggagtat attcaagttg
      421 ttaccattta catgaagttc tgtcaaaagc ggagaatttt caggtaggga gattaactca
      481 ttgttggaaa tattaagttc acgtatatgc aaagggagtg gtggtaaaga acgtagtttc
      541 agtaagctta aattgagaac aggctcccgg gtatccagac atattttcaa taatcgaacc
      601 gcctggatgc gattttctgt tgttgttcct tccctagccc agtcatccca gatgcggtgg
      661 taatctctgg tacactgttc ttctaccgat aaacgagata tacatgataa gccacaaagg
      721 gaacgaaaaa aagaatgatt gttgatcggt ttcatttatt aacccctcac tattcatatc
      781 ttggtctatt aatgcaaata aaacgagaaa gtctttaaaa aaacaatcct agagctctat
      841 cggcgttttc attccagctg gaggaatatg ttcctgtctt tccagtaacc gtcgattgtt
      901 atatcagtct acccatgtta atgtgaccag ttctactttc atccagtttg gattgatctt
      961 tatcccctat attttcaaac aatttttatc atttaactca ttactgtctc gatattccca
     1021 tagcaaacga tctggttggt tagcccctca aaaaagtcag ttgcacgccg taaatccctg
     1081 ccggtattga gcgaggattt acgggttgtt gttaaggtcc gtaatcgggt cacagttttt
     1141 ccggagtcaa tccggtctgc ggtttatgct tatgcgacgt gattatgaat ggtgcagtc
//
LOCUS       DADMHM010000378         1194 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.384, whole genome shotgun sequence.
ACCESSION   DADMHM010000378 DADMHM010000000
VERSION     DADMHM010000378.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1194)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1194)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1194
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.384"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..481)
                     /gene="ospG"
                     /locus_tag="JN125_004268"
     CDS             complement(<1..481)
                     /gene="ospG"
                     /locus_tag="JN125_004268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III secretion system effector protein
                     kinase OspG"
                     /protein_id="HAY8873787.1"
                     /translation="MKITSTIIQTPFPFENNNSHAGIVTEPILGKLIGQGSTAEIFED
                     VNDSSALYKKYDLIGNQYNEILETAWQESELFNAFYGDEASVVIQYGGDVYLRMLRVP
                     RTPLSDIDTADIPDNIESLYLQLICKLNELSIIHYDLNTGNMLYDKESESLFPIDFRN
                     "
     gene            complement(624..736)
                     /locus_tag="JN125_004269"
                     /pseudo
     CDS             complement(624..736)
                     /locus_tag="JN125_004269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000970002.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            complement(733..1002)
                     /locus_tag="JN125_004270"
     CDS             complement(733..1002)
                     /locus_tag="JN125_004270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000079945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873788.1"
                     /translation="MAQVNMSVRIDAELKDAFMAAAKSMDRNGSQLIRDFMRQTVERQ
                     HNSWFRDQVAAGRQQLECGDVLPHDMVESSAAAWRDEMSRKIADK"
BASE COUNT          320 a          301 c          240 g          333 t
ORIGIN      
        1 tattgcgaaa atctattggg aataaacttt cactttcttt atcatacagc atattacctg
       61 tattaagatc gtaatggatt atactcaact cattcaattt acatatcaac tgtagataaa
      121 ggctctctat attatcaggg atatcagctg tatcaatgtc actaagggga gtcctaggca
      181 cgcgcagcat tcggaggtac acatctccgc catactgtat aacaacggat gcttcatcgc
      241 cataaaaagc attaaaaagc tcagattctt gccaagccgt ttccagaatc tcattgtact
      301 ggttgccaat aagatcatac tttttataca aagcagatga atcattcaca tcttcaaaga
      361 tttctgctgt cgacccctga cctattaact taccgagaat gggctccgtt actatgccag
      421 catgagaatt attattctca aatggaaaag gtgtttgaat aatggtagat gttattttca
      481 tgtcatacct ttgttacgat atttaaaaat cacaagagat tttcacacaa aataacgtta
      541 cacgctacct tgtgtggtcc agatgttcct tccacacgac cgttgcggcc tttatacggc
      601 tgccctgcca ggctgctggc tgaataacca atccgttcgt ccggttcaat ggcggccatc
      661 aggttctgct ccgcaatgta ctacgaatgc gcttcctgtc ctggatggcc agcatggtcc
      721 agaacatctc catcatttat cagcaatctt cctgctcatt tcatcccgcc atgcagcagc
      781 agaggattcg accatgtcat ggggaagcac atcaccgcat tcgagttgct gacggcctgc
      841 cgcaacctgg tcacggaacc aagaattgtg ctgccgttca acggtctggc gcataaaatc
      901 ccggattaac tgagagccat tacggtccat gctttttgca gcggccataa aagcatcctt
      961 cagttctgcg tcgattctta cactcatatt aacctgtgcc atttgccacc tcgtcattac
     1021 cacgtatata cacagtatat aactgttcag atatcgtcac caggatatgc cgcgccagcg
     1081 gcatgtaagg cggcactccg ttgttgcata tggcagagga gtaaaaccgc cgaagcccgg
     1141 cgtaagccgg tacgtattga caggtttcac ctgtcctatc actggcgctg acag
//
LOCUS       DADMHM010000379         1179 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.385, whole genome shotgun sequence.
ACCESSION   DADMHM010000379 DADMHM010000000
VERSION     DADMHM010000379.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1179)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1179)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1179
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.385"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..1152
                     /locus_tag="JN125_004271"
     CDS             <1..1152
                     /locus_tag="JN125_004271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416896.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HAY8873789.1"
                     /translation="EAGKSFCCLRIDNLEFMSRHYGLMMRVHCIRSICRTLLPLMQEN
                     EKLYQLPGSELLLVLSGPETEGRLQHMVNILNSRQIHWNNTGLDMGYGAAWGRFDGNQ
                     ETLQPLLGQLSWLAEQSCAHHHVLALDSREEMVSGQTTKQVLLLNTIRTALDQGDLLL
                     YAQPIRNKEGEGYDEILARLKYDGGIMTPDKFLPLIAQFNLSARFDLQVLESLLKWLA
                     THPCDKKGPRFSVNLMPLTLLQKNIAGRIIRLFKRYHISPQAVILEITEEQAFSNAES
                     SMYNIEQLHKFGFRIAIDDFGTGYANYERLKRLQADIIKIDGVFVKDIVTNTLDAMIV
                     RSITDLAKAKSLSVVAEFVETQQQQALLHKLGVQYLQGYLIGRPQPLAD"
BASE COUNT          292 a          259 c          329 g          299 t
ORIGIN      
        1 gaggcgggca agagtttttg ctgcctgcgc attgataatc ttgagtttat gagtcgtcat
       61 tacggcttaa tgatgcgcgt tcactgtatc cgctcaattt gccgtacgct gctgccgttg
      121 atgcaggaaa acgaaaagtt gtatcaattg ccgggtagtg aactgctgtt agtgctgagc
      181 gggccggaaa cggaagggcg actccagcat atggttaaca tcctgaatag tcggcaaatt
      241 cactggaaca ataccgggct ggatatgggc tatggtgctg cctgggggcg ttttgatgga
      301 aatcaggaaa ccctgcaacc cttgttgggg cagttaagct ggctggcgga gcaatcctgc
      361 gcacatcatc atgtgctggc gctggatagc agagaagaga tggtttccgg gcagaccact
      421 aaacaggtgc tattgctgaa taccattcgc acggcgttag atcagggtga tttgctgctc
      481 tacgcccagc caattcgcaa caaagagggt gaaggttatg atgagatcct cgcgcgactg
      541 aaatatgacg gcggcattat gaccccggat aagtttctgc cccttattgc tcagtttaac
      601 cttagcgcgc gttttgattt gcaagtgctg gaatccttgt tgaagtggct ggcaacacac
      661 ccttgcgaca aaaaaggacc gcgcttttca gtcaatttaa tgccgctcac gctgctgcaa
      721 aagaatattg ccgggcggat tattcgtctg tttaagcgtt atcacatctc cccgcaggcg
      781 gtcattcttg agatcaccga ggagcaggcg ttttctaacg cagaaagcag catgtacaac
      841 atcgagcagc tgcataagtt tggtttccgg attgcgattg atgactttgg caccggctat
      901 gccaactacg aacggttaaa gcgtttgcag gctgatatca tcaaaattga tggcgtcttt
      961 gtgaaagata ttgtcacgaa cacgctggat gcgatgattg tgagatcaat taccgatctg
     1021 gcgaaagcga agtcattgag tgtggtcgcg gagtttgtcg agacgcaaca gcagcaggcg
     1081 ctattgcata agctcggggt gcaatatctg caagggtatt tgattggtcg cccgcagcca
     1141 ttagctgatt aacaggcgta aaaaaaccgg ggaattatc
//
LOCUS       DADMHM010000380         1174 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.386, whole genome shotgun sequence.
ACCESSION   DADMHM010000380 DADMHM010000000
VERSION     DADMHM010000380.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1174)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1174)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1174
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.386"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            152..346
                     /locus_tag="JN125_004272"
     CDS             152..346
                     /locus_tag="JN125_004272"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873790.1"
                     /translation="MIGHITNSGGNNSLMKHDVVQGNNIVDLDLLRNFNGVTGLNRDN
                     FIYISDIFLNIKQRNEKIMQ"
     gene            349..>1174
                     /locus_tag="JN125_004273"
     CDS             349..>1174
                     /locus_tag="JN125_004273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005136105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SopA family protein"
                     /protein_id="HAY8873791.1"
                     /translation="MLREVSISNDTISVKFYRNEKIECACNLLMDKDAQGYIDLSDFD
                     VTNCHFKGDVISKVSFLSSNLQHVTFECKEIENCNFTKATVDNVIFKCRRLHNVIFLK
                     TSGECVDFSQNILDTVDFSQSQLGHSNFRECQIRNSNFDNCYLYASHFTRAEFLSAKE
                     ISFIKSNLTAVMFDHVRMSTGNVKDCITEQLELTIDYSDIFGNEDLDGYINNIIKMID
                     TLPDNAMILKSVLPVKLVMQLKILNIVNKNFIENMKKTFSHCPYIKDPIIRSYIHSG"
BASE COUNT          393 a          168 c          200 g          413 t
ORIGIN      
        1 cattaccatt ttttatagta cttcacttct tcttcactaa gaatgtccat tatctcaatg
       61 ccttatcaga gattcttttc ctttcgccgg tagtgtctgg acgctcaggc tacttttcca
      121 ggttatttta tttctgtatt acagaggttt tatgataggt catatcacaa attctggtgg
      181 caataactct ttgatgaaac atgatgtggt tcaaggaaat aatatagtag atcttgattt
      241 actacgtaat ttcaatgggg tgacaggttt aaacagagat aactttattt atatcagtga
      301 tatattttta aatataaaac aacggaacga aaaaatcatg caataaatat gttacgtgaa
      361 gtctcaatta gtaatgatac tataagtgta aaattctaca gaaatgaaaa aatagaatgc
      421 gcttgtaatc ttctgatgga taaagatgcg caggggtata tcgacctgtc tgattttgat
      481 gtaacaaatt gtcattttaa aggtgacgtt atttctaagg tgtctttttt atcatcaaat
      541 ctacaacatg taactttcga atgtaaagaa attgagaatt gcaattttac taaggcaaca
      601 gttgataatg ttatatttaa atgtcgacgt ttacacaatg tgatttttct caaaacgagt
      661 ggcgaatgtg ttgattttag ccaaaatatt cttgatacag ttgacttctc gcagagtcaa
      721 cttggtcata gtaattttcg cgaatgtcag attagaaatt caaacttcga taattgttat
      781 ctttacgctt cgcacttcac cagagcagag tttctgtctg ccaaagaaat atcatttatt
      841 aaatcgaatt tgacagctgt tatgtttgat catgtgcgaa tgtcgacagg gaatgttaaa
      901 gattgcatta cagaacaatt ggaattaact attgattatt cagatatatt tgggaatgaa
      961 gatctcgatg gttatatcaa taacattata aaaatgattg atacattgcc agataatgca
     1021 atgatattga aatccgttct gccagtaaaa ctggttatgc aattaaaaat tcttaatatt
     1081 gttaataaaa actttattga gaatatgaag aaaacattta gccattgtcc ttatataaaa
     1141 gatccaatta tacgcagtta tatccattct ggtg
//
LOCUS       DADMHM010000381         1174 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.387, whole genome shotgun sequence.
ACCESSION   DADMHM010000381 DADMHM010000000
VERSION     DADMHM010000381.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1174)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1174)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1174
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.387"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..>1174
                     /locus_tag="JN125_004274"
     rRNA            <1..>1174
                     /locus_tag="JN125_004274"
                     /product="23S ribosomal RNA"
BASE COUNT          330 a          250 c          362 g          232 t
ORIGIN      
        1 cgttataacc ggcgatttcc gaatggggaa acccagtgtg attcgttaca ctatcattaa
       61 ctgaatccat aggttaatga ggcgaaccgg gggaactgaa acatctaagt accccgagga
      121 aaagaaatca accgagattc ccccagtagc ggcgagcgaa cggggagcag cccagagcct
      181 gaatcagtgt gtgtgttagt ggaagcgtct ggaaaggcgt gcgatacagg gtgacagccc
      241 cgtacacaaa aatgcacata ttgtgagctc gatgagtagg gcgggacacg tggtatcctg
      301 tctgaatatg gggggaccat cctccaaggc taaatactcc tgactgaccg atagtgaacc
      361 agtaccgtga gggaaaggcg aaaagaaccc cggcgagggg agtgaaaaag aacctgaaac
      421 cgtgtacgta caagcagtgg gagcacgctt aggcgtgtga ctgcgtacct tttgtataat
      481 gggtcagcga cttatattct gtagcaaggt taaccgaata ggggagccga agggaaaccg
      541 agtcttaact gggcgttaag ttgcagggta tagacccgaa acccggtgat ctagccatgg
      601 gcaggttgaa ggttgggtaa cactaactgg aggaccgaac cgactaatgt tgaaaaatta
      661 gcggatgact tgtggctggg ggtgaaaggc caatcaaacc gggagatagc tggttctccc
      721 cgaaagctat ttaggtagcg cctcgtgaat tcatctccgg gggtagagca ctgtttcggc
      781 aagggggtca tcccgactta ccaacccgat gcaaactgcg aataccggag aatgttatca
      841 cgggagacac acggcgggtg ctaacgtccg tcgtgaagag ggaaacaacc cagaccgcca
      901 gctaaggtcc caaagtcatg gttaagtggg aaacgatgtg ggaaggccca gacagccagg
      961 atgttggctt agaagcagcc atcatttaaa gaaagcgtaa tagctcactg gtcgagtcgg
     1021 cctgcgcgga agatgtaacg gggctaaacc atgcaccgaa gctgcggcag cgacactatg
     1081 tgttgttggg taggggagcg ttctgtaagc ctgtgaaggt gtactgtgag gtatgctgga
     1141 ggtatcagaa gtgcgaatgc tgacataagt aacg
//
LOCUS       DADMHM010000382         1161 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.388, whole genome shotgun sequence.
ACCESSION   DADMHM010000382 DADMHM010000000
VERSION     DADMHM010000382.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1161)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1161)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1161
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.388"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            71..460
                     /locus_tag="JN125_004275"
                     /pseudo
     CDS             71..460
                     /locus_tag="JN125_004275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311470.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
     gene            complement(490..>1161)
                     /locus_tag="JN125_004276"
     CDS             complement(490..>1161)
                     /locus_tag="JN125_004276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000080172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
                     /protein_id="HAY8873792.1"
                     /translation="GKHPEQHLSPFRGILQADAFNGYDRLFSAEREGGALTEAGCWAH
                     ARRKVHDVYISTKSATAEEALKLIGELYAIEHEIRGLPVSERLAVRQMQSKPLLTSLY
                     KLMQEKEHTLSKKCRLRDAFRYIRKHWVALCNFSDDGLAEADNNAAERALRAVCLGKK
                     NFMFFGSDHGGERGALLYGLIGTCRLNGIDPEAYLRYILSVLPEWPSNRVDELLPWNV
                     ALTNK"
BASE COUNT          264 a          300 c          290 g          307 t
ORIGIN      
        1 cgacacagaa catttaaaaa aatgaatgtt tttatattct agattcgata ttttcgatag
       61 gtttggggtt atggatctgc gccgttttat tacgcttaaa accgtggtgg aagagggttc
      121 ctttttgcga gcttcgcaaa aattgtgctg tacacaatcg acggtgactt ttcatattca
      181 gcagcttgag caggagtttt cagtccagtt atttgagaaa attggccgac ggatgtgcct
      241 tacccgcgaa ggaaaaaagt tgctgccgca catttatgaa cttacccgag tgatggatac
      301 gcttcgtgag gctgccaaaa aggagtcaga tccggacggg gaactacgcg ttgtttcggg
      361 cgaaacgttg ctctcttacc gaatgccgca ggtgttgcag cgttttcggc aacgcgcacc
      421 aaaagtgcgt ttatcgttgc agtcgctgaa ctgttacgtg taagcgtcaa cggagcaccg
      481 tattgacgct tatttattgg tgagtgctac gttccatggc aggagttcgt caacacggtt
      541 ggaaggccat tccggcagta cgctcaggat atagcgcaga tacgcttccg gatcgatacc
      601 gttcagtcgg caggtgccga tcagcccgta cagtagcgca ccacgctctc caccgtgatc
      661 gctgccgaag aacataaagt ttttctttcc gagacagact gcacgaagcg ctctttccgc
      721 ggcattatta tccgcctcag ccagaccatc atcactgaag ttgcacaacg caacccagtg
      781 cttcctgata taccggaacg catctctcag acggcatttt ttcgataacg tgtgttcttt
      841 ctcctgcatc agcttataca gggaagtcag tagcggttta ctctgcattt gcctgaccgc
      901 caggcgttca gacaccggca acccgcgtat ttcgtgctcg atggcgtaca gctcaccgat
      961 tagtttcagg gcttcttccg ctgtcgcgct tttggtactg atatatacat cgtggacttt
     1021 gcgccgcgca tgagcccagc atcctgcttc cgtcaacgcg ccgccttctc gttcggcact
     1081 gaacagccga tcgtaaccat taaacgcatc tgcctgcagg ataccccgga agggactaag
     1141 gtgctgctcc ggatgtttac c
//
LOCUS       DADMHM010000383         1159 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.389, whole genome shotgun sequence.
ACCESSION   DADMHM010000383 DADMHM010000000
VERSION     DADMHM010000383.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1159)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1159)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1159
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.389"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(145..381)
                     /locus_tag="JN125_004277"
     CDS             complement(145..381)
                     /locus_tag="JN125_004277"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873793.1"
                     /translation="MKAIQCCYFLALVSSNLMAGVMGNDNIFLSNSDSAVLYCVAKIF
                     PDGENILIYKVNIINASSKKDVFFMKAQHQPTMT"
     gene            complement(383..1135)
                     /locus_tag="JN125_004278"
                     /pseudo
     CDS             complement(383..1135)
                     /locus_tag="JN125_004278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001347914.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat protein"
BASE COUNT          312 a          261 c          183 g          403 t
ORIGIN      
        1 cacccttctg atgagctttc cttggatgat taccagactg aatacacagc caaagatttt
       61 tacctcattc tgctcttttt tctcaaatga catatattat attttacatc atattcatag
      121 gcatatgaca ttcccccgcc cccattatgt cattgtgggt tggtgttggg ctttcataaa
      181 aaaaacatct ttttttgaac tagcattaat tatatttact ttatatatta aaatattttc
      241 tccatctgga aatattttag ccacacaata taaaacagct gaatccgaat tacttaaaaa
      301 tatattatca ttacccataa ctccagccat taaattactg gagactaaag caaggaaata
      361 acaacattgt attgccttca ttttaattac tcccttgtct gataattgta actccattcc
      421 ctttagcttt gggattatat tttagatagg tattatttgg tgttcccaag taactactgt
      481 attctttttt tcccattcca ttcatataag aattcgttaa atctttgctt gaaaaattta
      541 gactatcata aacatcattt tcttttgtta ctttatttcc tttatcgtca gagtaaaaac
      601 cgtgagtgtg ataatcgcct actctctctg aaccttcagg gcattttata tttcgcaagt
      661 ctacactatc attatcattt gaacttatcg gattcatggg gaaatattca ccttgcttct
      721 tacatattag tccaccatat tatttattct cgttaattga ttctccatta cacattgcca
      781 atgcaaatat tccaatatca tctatatttt ttgatttaaa ttcatataat cctaatggat
      841 ccatgctatt caccgggctc agcggatact gataaaaatt ccatcccccc ttcagcccaa
      901 tcggatcctg agtgatatat cgcccctgca gcgggtcata atagcggtgg cggttgtaat
      961 acaggccgga ctcctcatca tactgctgcc ccggcaggcg aatgagctgc tgcagatgat
     1021 gcgggttctc ttcattcagc aggttgcccc actcatcata ttctgcgcac cacgctgttg
     1081 ccccttccgt gctgatgagc gccagcggca ggccgcgatg gtcgcagtgg tacaggtgga
     1141 tttttcgcgc cggcgtgta
//
LOCUS       DADMHM010000384         1157 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.390, whole genome shotgun sequence.
ACCESSION   DADMHM010000384 DADMHM010000000
VERSION     DADMHM010000384.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1157)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1157)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1157
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.390"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..257
                     /locus_tag="JN125_004279"
     CDS             <1..257
                     /locus_tag="JN125_004279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016235166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873794.1"
                     /translation="PGGNCSPQNLSDLQNEKNRLCNQSRACAPQMLRKEILRRYEINL
                     ACASVRKQINNQCFGGGDKAHMEEENKAYKTAADCSGLIK"
     gene            254..757
                     /locus_tag="JN125_004280"
     CDS             254..757
                     /locus_tag="JN125_004280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000720080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873795.1"
                     /translation="MKKIIFSNESAVYDELMIHFPCQPLPHISNDIIGLEELDIVYNF
                     FQKKQWNEIANNLKIKDNSYALELGITFLPEKVFCYYIPLYIYVSLFNKNDFWVFESD
                     FIQQCLCPEYRDYDDFLNFVFNFSDIQLSIIAQFMSYESDAGFFYASKACMDFWEDYS
                     PLLHKKI"
     gene            822..>1157
                     /locus_tag="JN125_004281"
     CDS             822..>1157
                     /locus_tag="JN125_004281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001522575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat protein"
                     /protein_id="HAY8873796.1"
                     /translation="MTLAYRSLRIIHLYHCDYRGLPLTLISPDGATEWCAEYDEWGNL
                     LNEENPQHLQQLIRLPGQQYDEEYGLYYNRHRYYDPLQGRYITQDPIGLEGGWNQYVY
                     ASIHPTYSID"
BASE COUNT          365 a          202 c          245 g          345 t
ORIGIN      
        1 atcctggagg taactgtagt ccccagaacc tgagtgactt acaaaatgaa aaaaacagat
       61 tatgtaacca gtctagagct tgcgctcctc agatgctgag aaaagaaata ttgagacggt
      121 acgagataaa tttggcgtgc gcttcggtca gaaagcagat taataatcag tgctttggtg
      181 gtggagataa ggcccatatg gaagaagaga ataaagcata taaaacagca gctgattgca
      241 gtggcttaat aaaatgaaaa aaataatttt ctctaacgag agtgcagtct atgatgaact
      301 tatgattcat ttcccatgcc agccattacc tcatatttca aatgatatta taggactgga
      361 ggaactggat attgtatata attttttcca aaagaaacaa tggaatgaaa tagccaataa
      421 tttaaaaata aaggataact cttatgcttt agagttagga attacattcc tccctgagaa
      481 agtattctgc tattacatcc ctctgtatat ttatgtctcg ttgtttaata agaatgattt
      541 ttgggttttt gaatccgatt ttattcaaca atgtttatgt cctgagtatc gggattacga
      601 tgattttttg aattttgttt ttaatttttc agatatacaa ctatctatta ttgcacagtt
      661 tatgtcttat gaatcagacg ctggattctt ttatgcaagt aaagcttgta tggatttttg
      721 ggaagattat tcacctctat tacataagaa aatttaatcg taaaaggtat aaatggttta
      781 ataaaaaact tgtctactcg ttggagtaga tgaaaaataa gatgacgttg gcatatagat
      841 cactgcgaat aatccacctc taccactgcg actatcgcgg cctgccgctg acgcttatca
      901 gccctgacgg ggcaacagaa tggtgcgcag aatatgatga atggggcaac ctgctgaatg
      961 aagagaaccc gcagcacctg cagcagctta tccgtctgcc ggggcagcag tatgatgagg
     1021 agtacggcct gtattacaac cgccaccgct attatgaccc gctgcagggg cggtatatca
     1081 ctcaggatcc gattgggctg gaaggcgggt ggaatcagta tgtatatgct tccatacatc
     1141 caacatattc tattgat
//
LOCUS       DADMHM010000385         1147 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.391, whole genome shotgun sequence.
ACCESSION   DADMHM010000385 DADMHM010000000
VERSION     DADMHM010000385.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1147)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1147)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1147
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.391"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            92..850
                     /locus_tag="JN125_004282"
     CDS             92..850
                     /locus_tag="JN125_004282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012599877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HAY8873797.1"
                     /translation="MSFMSSFLLGRFLHPGVFSLCVLLPLLASATTSHISFSYAARQR
                     MQNRARLLKQYQTHLKKQASYIVEGNAESRRALRQHNREQIKQHPEWFPAPLKASDRR
                     WQALVENNHFLSSNHLHNITEVAIHRLEQQLGKPYVWGGTRPDQGFDCSGLVFYAYNK
                     ILEAKLPRTANEMYHYHRATIVANNDLRRGDLLFFHIHSREIADHMGVYLGDGQFIES
                     PRMGETIRVSRLAEPFWQDHFLGARWILTEETIL"
     gene            1026..>1147
                     /locus_tag="JN125_004283"
     CDS             1026..>1147
                     /locus_tag="JN125_004283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY8873798.1"
                     /translation="MSEYRRYYIKGGTWFFTVNLRNRRSQLLTTQYQMLRNAII"
BASE COUNT          274 a          301 c          277 g          295 t
ORIGIN      
        1 tgaaacctca atagtaatat gcaaataagc aattaataat cccgtttact cctccggtct
       61 tttaaaattc tcaccttcat tcagccggtt tatgtccttc atgtcttcgt tcttgctcgg
      121 cagatttctg catccaggcg tgttttcgtt atgcgttttg ctccctttac tcgccagcgc
      181 caccacatca catatctctt tcagctacgc cgcccgccag cggatgcaaa accgtgcgcg
      241 tttattaaaa cagtaccaaa cccatctgaa aaaacaggcc agctacattg tggaaggcaa
      301 tgccgaaagc agaagggcgc tacgccagca caaccgggag cagataaaac agcatccaga
      361 atggtttcct gcgccgctca aggcaagtga cagacgctgg caggcgttgg tagaaaacaa
      421 tcatttcctc agcagcaacc acctgcataa tatcaccgaa gtggcgattc accgtctgga
      481 gcaacagctt ggcaagcctt acgtctgggg cggcacgcgg cccgatcaag gcttcgactg
      541 tagcgggttg gttttttatg cctacaacaa gatccttgag gctaagctcc cgcgcacggc
      601 taatgagatg tatcactacc atcgggcaac cattgtggca aataacgacc tgcgccgggg
      661 agatttgctg tttttccata tccacagccg tgaaattgcc gaccatatgg gcgtgtatct
      721 gggagacggt cagtttattg agtcgccgcg catgggggaa accattcggg taagtcggtt
      781 agctgaacct ttctggcagg atcatttttt gggcgcgcgg tggatattga cggaagagac
      841 gattttgtag gacggataag gcgtttacgc cgcatccggc ggtggtgcgc agatgcctga
      901 tgcgacgctg acgcgtctta tcatgcctac aaatctgtgc gtttttgcga gccgctttcc
      961 tgttattcca tcacctcatt gccgaccttt ccttttcttc ttaccgttga gaaaaaggag
     1021 tcgccatgtc tgaatatcgt cgttattaca tcaagggggg aacctggttt ttcacggtga
     1081 atttacgcaa tcgtcgaagc caactcttga ccacccagta ccagatgctc cgtaacgcca
     1141 ttattaa
//
LOCUS       DADMHM010000386         1133 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.392, whole genome shotgun sequence.
ACCESSION   DADMHM010000386 DADMHM010000000
VERSION     DADMHM010000386.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1133)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1133)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1133
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.392"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..337)
                     /gene="rcnB"
                     /locus_tag="JN125_004284"
     CDS             complement(<1..337)
                     /gene="rcnB"
                     /locus_tag="JN125_004284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni(II)/Co(II) efflux transporter accessory
                     subunit RcnB"
                     /protein_id="HAY8873799.1"
                     /translation="MTIKNKMLLGALLLVTSAAWAAPATAGSTNTSGISKYELSSFIA
                     DFKHFKPGDTVPEMYRTDEYNIKQWQLRNLPAPDAGTHWTYMGGAYVLISDTDGKIIK
                     AYDGEIFYHR"
     gene            complement(556..>1133)
                     /gene="rcnA"
                     /locus_tag="JN125_004285"
     CDS             complement(556..>1133)
                     /gene="rcnA"
                     /locus_tag="JN125_004285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nickel/cobalt efflux transporter RcnA"
                     /protein_id="HAY8873800.1"
                     /translation="QSAELWLQLISAVIIISTAFWMFWRTWRGERNWLENMHGHDYEH
                     HHHDHEHHHDHGHHHHHEHGEYQDAHARAHANDIKRRFDGREVTNWQILLFGLTGGLI
                     PCPAAITVLLICIQLKALTLGATLVVSFSIGLALTLVTVGVGAAISVQQVAKRWSGFN
                     TLAKRAPYFSSLLIGLVGVYMGVHGFMGIMR"
BASE COUNT          298 a          274 c          282 g          279 t
ORIGIN      
        1 agcgatgata aaaaatctca ccgtcgtagg ctttaatgat tttaccgtcg gtgtcgctga
       61 tcaacacgta cgcgccaccc atataggtcc agtgcgtccc ggcatcaggc gcgggcaggt
      121 tacgtaactg ccactgctta atgttgtact catcggtgcg gtacatctct gggacggtat
      181 cgcctggttt gaaatgctta aagtcagcaa tgaaactgct taactcatac ttagaaattc
      241 ccgaggtatt ggtcgaaccc gcggtggctg gtgcggccca ggcggcactg gtaaccagca
      301 aaagcgcacc cagcaacatc ttatttttaa tggtcataaa ctctccactt tggggatctg
      361 taatatcagt cgcatatctt tcctgccata caatataact gacaagcgat attttgttag
      421 tgatcccatg atttcgtaaa aagtgtaaat gaaaggatgc cctaaaagca tccttagcga
      481 gcagagagtc agcggaaata gctgatttaa gaatcatcct gggctgaaga taacatgcaa
      541 gcctaaagga ttgagttatc gcattatgcc catgaagcca tgtacgccca tatacacacc
      601 gactaagcca atcaacagac tggaaaaata gggggcgcgt ttagcgagag tgttaaatcc
      661 gctccagcgt tttgcgacct gctgaacgct gattgctgcg ccaacgccta cggtgacaag
      721 cgttaacgcc aggccaatgc tgaaactgac gaccagtgtt gcgcccagtg tcagggcttt
      781 caactgaatg catatcaaca gcacggtaat tgctgccggg caggggataa ggccaccggt
      841 taagccaaat aacaaaattt gccagttggt gacctctcta ccatcaaagc gtcgtttaat
      901 gtcattggca tgggctcgtg catgggcatc ctgatactcg ccatgttcgt gatggtgatg
      961 atgtccatgg tcgtggtgat gttcgtgatc gtgatgatga tgctcataat catgcccgtg
     1021 catattctcc agccagttgc gttcgccgcg ccaggtacgc cagaacatcc agaacgcggt
     1081 gctaataatg atcactgcgg aaatcagctg gagccacagt tctgctgatt gag
//
LOCUS       DADMHM010000387         1110 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.393, whole genome shotgun sequence.
ACCESSION   DADMHM010000387 DADMHM010000000
VERSION     DADMHM010000387.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1110)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1110)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1110
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.393"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..469)
                     /locus_tag="JN125_004286"
     CDS             complement(<1..469)
                     /locus_tag="JN125_004286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001459486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HAY8873801.1"
                     /translation="MIRQKILQQLLEWIECNLEHPISIEDIAQKSGYSRRNIQLLFRN
                     FMHVPLGEYIRKRRLCRAAILVRLTAKSMLDIALSLHFDSQQSFSREFKKLFGCSPRE
                     YRHRDYWDLANIFPSFLIRQQQKTECRLVNFPETPIFGNSFKYDIEVSNKSPDE"
     gene            718..>1110
                     /locus_tag="JN125_004287"
     CDS             718..>1110
                     /locus_tag="JN125_004287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308365.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HAY8873802.1"
                     /translation="MEFSVLSNNLKMPMMGFGVFQVTDKNVCKQSVLNAIRTGYRLID
                     TAAVYGNEDAVGEAVREAISEGLCTRDELFITSKLWVQDMLNQDTAAAGIEASLKKSG
                     LEYFDLYLLHQAMRDYFSAWRALEDAYEE"
BASE COUNT          317 a          216 c          263 g          314 t
ORIGIN      
        1 cttcatccgg tgatttattc gacacttcaa tgtcatattt aaatgagttg ccaaaaatag
       61 gtgtctcagg aaaattgact aatctacact ccgtcttttg ctgttgacgt attaaaaaag
      121 aagggaagat atttgcgaga tcccaataat cacggtggcg gtattcacgg ggagagcagc
      181 cgaataactt tttaaattcg cggctgaatg actgctgtga atcaaaatgc aaagagagtg
      241 caatatcaag catagatttc gcggtgagcc ggacaagaat ggcggcacgg caaagccttc
      301 gtttgcgaat gtattctccc aaaggcacat gcatgaaatt tcggaacaga agctggatgt
      361 tgcgtctgct gtagccagat ttctgtgcga tatcttcgat tgaaataggg tgctcaagat
      421 tgcactcaat ccactccagg agctgctgta gaatcttctg cctaatcatc acattctccg
      481 ttaattcttt gtcatatcgc acattttcgt tatgccctgg gccctaagtg tatcaaaaac
      541 agcaagggcg aaggcaaaag cactggtagc gcctgcttcg ttgtccccga aaatagagag
      601 gtttcagtcc tgcattatta atgaattttt tgcataagtg atatcaaaat ccacgtacta
      661 atttgaggtt acgttttaac gtagactcat tgttcatgcc taatggaggg actgacagtg
      721 gaattttccg tattaagtaa caatctgaaa atgccgatga tgggatttgg tgtttttcag
      781 gttaccgata aaaacgtgtg caaacagtca gtgttgaacg ctatccgcac aggttatcga
      841 ctcatcgaca ctgcagcggt atacggtaat gaagatgccg tcggtgaagc cgttcgtgaa
      901 gctatatctg aaggtttatg tacccgagat gagttattta taacgtctaa attgtgggtg
      961 caggatatgt tgaatcagga tacggcagca gcaggtattg aagcatcatt aaaaaaatcg
     1021 ggactagagt acttcgacct ctatttattg caccaggcta tgcgcgatta tttcagtgcg
     1081 tggcgtgcac tcgaagatgc ctatgaagag
//
LOCUS       DADMHM010000388         1108 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.394, whole genome shotgun sequence.
ACCESSION   DADMHM010000388 DADMHM010000000
VERSION     DADMHM010000388.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1108)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1108)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1108
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.394"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..521
                     /locus_tag="JN125_004288"
     CDS             <1..521
                     /locus_tag="JN125_004288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HAY8873803.1"
                     /translation="NYTKLGEFTPPKTDAGTGRTIHLVQPAIDALKSQAEMTMLGKQH
                     SVEVKQREYGRSTVHKCTFVFSPQVIKQRQFSGPHYKVDSIRESWTSILKRAGLRHRK
                     SYQSRHTYACWSLAAGANPSFIASQMGHTNAQMVFNVYGAWMKDNNHEQIELLNKRLS
                     ESVPCMPHKKVG"
     gene            557..>1108
                     /locus_tag="JN125_004289"
     CDS             557..>1108
                     /locus_tag="JN125_004289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005117943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HAY8873804.1"
                     /translation="MPVTLRAWQRRYGLLKPQRTDGGHRLFNDADIDRIREIKRWIDN
                     GVQVSKVKMLLSNENVDVQNGWRDQQETLLTYLQSGNLHSLRTWIKERGQDYPAQTLT
                     THLFIPLRRRLQCQQPTLQALLAILDGVLINYIAICLASARKKQGKDALVVGWNIHDT
                     TRLWLEGWIASQQGWRIDVLAHSL"
BASE COUNT          321 a          267 c          273 g          247 t
ORIGIN      
        1 ggaattatac aaaacttggc gaattcactc caccaaaaac cgatgctggc accggaagga
       61 caattcatct ggttcaacca gctattgatg ctcttaaaag tcaggcggaa atgaccatgc
      121 ttggaaagca acattctgta gaggtaaagc agagggaata tgggagaagt actgtgcata
      181 aatgcacttt tgtttttagt cctcaggtaa taaaacagcg gcagttttcc ggaccgcact
      241 ataaggttga ctccatcagg gagtcatgga caagtatctt aaaacgcgca ggtctgagac
      301 acagaaaatc gtaccaatcc aggcatactt atgcatgctg gtcacttgcc gctggagcta
      361 atcctagttt tatcgcaagc cagatgggcc acacaaacgc acaaatggta ttcaatgttt
      421 acggagcatg gatgaaagac aacaatcacg aacagataga actccttaac aaaagactat
      481 ctgaaagtgt cccatgtatg ccccataaga aagtggggta aaataaaaac ttgtaaaatc
      541 agttagttta cccttaatcc ctgtcacgtt acgcgcgtgg cagaggcgtt acggattgct
      601 gaaaccgcaa cggacagacg gcggtcatcg gctgttcaac gatgccgata ttgaccggat
      661 ccgcgagatc aaacgctgga tcgacaacgg cgtgcaggtc agcaaagtta aaatgctgct
      721 cagtaatgaa aatgttgatg tgcagaacgg ctggcgcgat cagcaagaaa cattactgac
      781 ttacttgcaa agcggcaatc tgcatagcct gcgaacgtgg atcaaagagc gcggtcagga
      841 ttaccccgcc cagacgctca ccacgcattt gtttattcct ctgcgtcgac ggcttcagtg
      901 ccaacaaccg actctccagg cgctgctggc gatcctcgac ggcgtactga tcaactacat
      961 cgccatctgt ctggcttcgg cacgtaaaaa acagggtaaa gatgcgctgg tggttggctg
     1021 gaatattcac gataccaccc gtctgtggct ggagggctgg attgccagtc aacaaggatg
     1081 gcgcattgat gtcctcgccc actcgctc
//
LOCUS       DADMHM010000389         1094 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.395, whole genome shotgun sequence.
ACCESSION   DADMHM010000389 DADMHM010000000
VERSION     DADMHM010000389.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1094)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1094)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1094
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.395"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            11..532
                     /locus_tag="JN125_004290"
     CDS             11..532
                     /locus_tag="JN125_004290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HAY8873805.1"
                     /translation="MDVYANSQRVFRFQNGVAIAFKNIQAGTARKFTLSSANNSTKNA
                     AFYLWGNPSRSVVAELGDDSGWHFFSQRNTDNSITFAVNGQVIPLNYGNFDARYKYRT
                     EGVQDVRYGHEMYYSPGSNTVSWRFRAPSGHGLSGIAISDTGRDSADNVNGVYYRPLQ
                     KLINGTWYNVASV"
     gene            592..1080
                     /locus_tag="JN125_004291"
     CDS             592..1080
                     /locus_tag="JN125_004291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tail fiber assembly protein"
                     /protein_id="HAY8873806.1"
                     /translation="MTKQYDVTWLFSEDGKNWYEELKNFASDTIKITYTGDGRVVWVG
                     KDVTGIEPRNASVIEVPDITANRRITAPGYWFYRNDEFVFDYRLKAEDERDALLAQVS
                     ARTGEWEEDLLLGLISDEDREKLKAYRIYAKSLQAMDFSVITDKTSYNAIEWPASPEI
                     SS"
BASE COUNT          303 a          244 c          280 g          267 t
ORIGIN      
        1 agacggtatt ctggatgttt atgctaatag tcagcgtgta ttccgctttc agaatggagt
       61 ggctattgct tttaagaata ttcaggccgg aactgccaga aaattcacgt tatccagcgc
      121 caacaactcc acgaaaaatg cagcgtttta tttgtggggt aatccatcca ggtctgttgt
      181 tgcagagctt ggcgatgatt caggctggca ttttttcagc cagaggaata cagataacag
      241 catcacgttc gccgtaaacg gacaggtaat tccgttaaat tacggaaact tcgatgcccg
      301 ctataaatat cgaacagagg gggtacagga tgtacggtat ggccatgaaa tgtattacag
      361 ccccggcagt aacaccgttt cgtggagatt tcgcgcacct tcgggacacg ggctgtcagg
      421 gatagcgata tcggataccg gccgtgactc agcggataac gtcaacggcg tgtattaccg
      481 cccgcttcag aaactgatta atggcacctg gtataacgtg gcgagtgttt aacaatgttg
      541 catttaaaaa atattactgc gggcaatccg aaaaccgtgg aacaatatca gctgacaaaa
      601 caatatgatg tcacctggct tttttcggaa gacggaaaaa actggtatga agagctgaag
      661 aatttcgcca gcgacacaat taaaataact tacaccggag acggtcgcgt ggtgtgggtc
      721 ggtaaggatg tgacaggcat tgaaccccgt aacgccagtg ttattgaagt tcctgatatt
      781 accgccaacc gccgcattac cgcgccgggt tactggtttt accgcaatga tgaatttgtc
      841 tttgactaca gactcaaagc ggaagatgag cgtgatgccc ttctggctca ggtcagtgcc
      901 cggacagggg aatgggaaga agacctgctg ctggggctaa tcagcgacga agaccgggaa
      961 aaactgaaag cgtaccgcat ttacgcgaaa tcgctgcagg cgatggattt cagtgtcatc
     1021 actgataaaa cctcatacaa cgccattgaa tggcccgcct ctccggaaat ttcttcctga
     1081 tttaatttat cgcg
//
LOCUS       DADMHM010000390         1089 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.396, whole genome shotgun sequence.
ACCESSION   DADMHM010000390 DADMHM010000000
VERSION     DADMHM010000390.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1089)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1089)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1089
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.396"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..780)
                     /locus_tag="JN125_004292"
     CDS             complement(<1..780)
                     /locus_tag="JN125_004292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="E3 ubiquitin--protein ligase"
                     /protein_id="HAY8873807.1"
                     /translation="MLPTNNNHRLISNSFSTYSIDTSRAYESYLTHWTEWKNNRIQEE
                     QRDIAFQRLVSCLQNQETNLDLSELGLTTLPEIPPGIKSINISKNNLSLISPLPASLT
                     QLNVSYNRLIELPALPQGLKLLNASHNQLITLPTLPISLKELHVSNNQLCSLPVLPEL
                     LETLDVSCNGLAVLPPLPFSLQEISAIGNLLSELPPLPHNIHSIWAIDNMLTDIPYLP
                     ENLRNGYFDINQISHIPESILNLRNECSIDISDNPLSSHALQ"
BASE COUNT          313 a          156 c          255 g          365 t
ORIGIN      
        1 ttgcagagca tgggatgaca atgggttatc actaatatct attgaacatt cattcctcag
       61 attaagaatg ctttccggga tatgacttat ctgatttatg tcaaaataac cgttccttaa
      121 attttccggc aggtatggaa tatcggttaa catattgtcg attgcccata tggagtgaat
      181 gttgtgaggt agagggggga gttcactaag aagattccct attgcgctaa tctcttgtaa
      241 agaaaatggt aaaggtggta aaactgccag cccattacat gatacatcta atgtttccag
      301 tagttctggt aaaacaggaa gagaacataa ttgattattt gagacatgaa gctccttcaa
      361 agatatgggg agtgtgggta gtgtgattag ttgattgtgg gacgcattca ataatttaag
      421 tccttgaggc aaagcaggca gttcaataag tctgttatag ctgacattaa gctgtgtaag
      481 ggacgcaggc aatggggaga ttaagcttaa attattttta cttatattaa ttgatttaat
      541 tcccgggggg atttcaggta atgttgtcag gcctaattca gacaagtcta ggttcgtctc
      601 ttggttttgt agacatgata ctagtcgctg aaaagcgatg tctcgttgtt cttcttgtat
      661 gcggttattt ttccattcag tccaatgggt tagataactt tcatatgcgc ggctagtgtc
      721 gattgaataa gtggagaacg aatttgaaat taatctgtga ttgttatttg tcgggagcat
      781 aaatatcagg gcgtattctt tatgttgaga ggtgttggat tcttttttat ctgctttgca
      841 atgttattgg ttcccttcag cagtagacag gaacttctgg aggaggcgga tatatagttt
      901 gtgtaagcat attaactcca tatgttatat attgaagaac ttctgcttta cactatccta
      961 aactggatcg gtttaatgta aaaaaacgat actttttggg ggagggggca atttttcctt
     1021 aaggtatgaa aaaaggagct gaagctatat aatagctatt aatgccactg atatcagtga
     1081 atcatgtat
//
LOCUS       DADMHM010000391         1058 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.397, whole genome shotgun sequence.
ACCESSION   DADMHM010000391 DADMHM010000000
VERSION     DADMHM010000391.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1058)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1058)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1058
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.397"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..932
                     /gene="shiA"
                     /locus_tag="JN125_004293"
     CDS             <1..932
                     /gene="shiA"
                     /locus_tag="JN125_004293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="shikimate transporter"
                     /protein_id="HAY8873808.1"
                     /translation="TLRAIQGFAVGGEWGGAALLSVESAPKNKKAFYSSGVQVGYGVG
                     LLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLGALWVRNGMEESAEFEQQQHY
                     QAAAKKRIPVIEALLRHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNMGLPRELFL
                     NIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVF
                     FSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALIT
                     YFAGNWHSVAIYLLAGCLISAMTALLMKDSQRA"
BASE COUNT          231 a          230 c          278 g          319 t
ORIGIN      
        1 tgacgctgcg tgccattcag ggatttgccg tcggcggcga atggggaggc gcggcgttgc
       61 tttccgttga aagtgcacca aaaaataaaa aagcctttta cagtagcggt gtacaagttg
      121 gctacggtgt aggtttactg ctttcaactg gactggtttc attgatcagt atgatgacga
      181 ctgacgaaca gtttttaagc tggggctggc gcattccttt cctgtttagc atcgtactgg
      241 tactgggagc attgtgggtg cgcaatggca tggaggagtc cgcggaattt gaacaacagc
      301 aacattatca agctgccgcg aaaaaacgca tcccggttat cgaagcgctg ttacgacatc
      361 ccggtgcttt cctgaagatt attgcgctac gactgtgcga attgctgacg atgtacatcg
      421 ttactgcctt tgcacttaat tattcaaccc agaatatggg gctaccgcgc gaacttttcc
      481 ttaatattgg tttgctggta ggtggattaa gctgcctgac aattccctgt tttgcctggc
      541 ttgccgatcg ttttggtcgc cgtagggttt atatcacagg tgcgttaatc ggaacgttga
      601 gcgcatttcc tttctttatg gcgcttgaag cacaatctat tttctggata gttttcttct
      661 ccataatgct ggcaaacatt gcgcatgaca tggtggtgtg tgtgcaacaa ccgatgttta
      721 ccgaaatgtt tggtgccagt tatcgctata gtggcgctgg agtcggttat caggttgcca
      781 gtgtggttgg cggtggattt acacctttta ttgccgctgc actcatcact tactttgccg
      841 ggaactggca tagcgtcgcc atttatttgc tggctggatg cctgatttcc gcaatgaccg
      901 ctttgttgat gaaagacagt caacgcgctt gatagcctgg cgaagatcat ccgatcttcg
      961 ccttacactt ttgtttcaca tttctgtgac atactatcgg atgtgcggta attgtatgga
     1021 acaggagaca cacatgaata ataagggctc cggtctga
//
LOCUS       DADMHM010000392         1057 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.398, whole genome shotgun sequence.
ACCESSION   DADMHM010000392 DADMHM010000000
VERSION     DADMHM010000392.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1057)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1057)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1057
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.398"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            1..1057
                     /locus_tag="JN125_004294"
                     /pseudo
     CDS             1..1057
                     /locus_tag="JN125_004294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611435.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3-like element IS2 family transposase"
BASE COUNT          261 a          261 c          318 g          217 t
ORIGIN      
        1 accacacagg aaaagatcgc aattgttcag cagagctttg aaccggggat gacggtctcc
       61 ctcgttgccc ggcaacatgg tgtagcagcc agccagttat ttctctggcg taagcaatac
      121 caggaaggaa gtcttactgc tgtggccgcc ggagaacagg ttgttcctgc ctctgaactt
      181 gctgccgcca tgaagcagat taaagaactc cagcgcctgc tcggcaagaa aacgatggaa
      241 aatgaactcc tcaaagaagc cgttgaatat ggacgggcaa aaaagtggat agcgcacgcg
      301 cccttattgc ccggggatgg ggagtaagct tagtcagccg ttgtctccgg gtgtcgcgtg
      361 cgcagttgca cgtcattctc agacgaaccg atgactggat ggatggccgc cgcagtcgtc
      421 acactgatga tacggatgtg cttctccgta tacaccatgt tatcggagag ctgcccacgt
      481 atggttatcg tcgggtatgg gcgctgcttc gcagacaggc agaacttgat ggtatgcctg
      541 cgatcaatgc caaacgtgtt taccggatca tgcgccagaa tgcgctgttg cttgagcgaa
      601 aacctgctgt accgccatcg aaacgggcac atacaggcag agtggccgtg aaagaaagca
      661 atcagcgatg gtgctctgac gggttcgagt tctgctgtga taacggagag agactgcgtg
      721 tcacgttcgc gctggactgc tgtgatcgtg aggcactgca ctgggcggtg actaccggcg
      781 gcttcaacag tgaaacagta caggacgtca tgctgggagc ggtggaacgc cgcttcggca
      841 acgatcttcc gtcgtctcca gtggagtggc tgacggataa tggttcatgc taccgggcta
      901 atgaaacacg ccagttcgcc cggatgttgg gacttgaacc gaagaacacg gcggtgcgga
      961 gtccggagag taacggaata gcagagagct tcgtgaaaac gataaagcgt gactacatca
     1021 gtatcatgcc caaaccagac gggttaacgg cagcaaa
//
LOCUS       DADMHM010000393         1056 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.399, whole genome shotgun sequence.
ACCESSION   DADMHM010000393 DADMHM010000000
VERSION     DADMHM010000393.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1056)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1056)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1056
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.399"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..291)
                     /locus_tag="JN125_004295"
     CDS             complement(<1..291)
                     /locus_tag="JN125_004295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873809.1"
                     /translation="MLEKSLATLFALLILATLINRFLLWRLPERKGGEVTLRIRTWWG
                     IVICFSLVISGPRWMTLAFFALISFLALKEYCMLISVHFPRWLYWVIPLNYLL"
     gene            complement(291..896)
                     /locus_tag="JN125_004296"
     CDS             complement(291..896)
                     /locus_tag="JN125_004296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707670.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-alcohol phosphatidyltransferase family
                     protein"
                     /protein_id="HAY8873810.1"
                     /translation="MTLYQIKPLFQSLLRPTMFWLYKHHVTANHITLTALALSLFTGL
                     LLVLVAQPILFLLLPIVLFIRMALNALDGMLARECNQQTRLGAILNETGDVISDIALY
                     LPFLFLPESNASLVILMLFCTILTEFCGLLAQTINGIRSYAGPFGKSDRALIFGLWGL
                     AVAIYPQWMQWNNLLWSIASILLLWTAINRCRSVLFMSAER"
BASE COUNT          350 a          242 c          223 g          241 t
ORIGIN      
        1 aagcaaatag ttaagaggaa taacccaata taaccaccgc ggaaaatgta cggatataag
       61 catacaatat tctttcaatg ccagaaaact tatcagcgca aaaaacgcca acgtcatcca
      121 gcgtggacct gaaatcacca gtgaaaaaca aatgacgatg ccccaccagg tacgaatacg
      181 taatgtaacc tcaccccctt ttctctccgg taaccgccat agcagaaaac ggtttatcag
      241 cgttgctaaa attaacaacg cgaaaagtgt tgccagagat ttttccagca ttatctttca
      301 gcactcataa aaagcacact ccgacaacga ttaatcgcag tccagagaag cagaattgaa
      361 gcaatgctcc ataaaagatt attccattgc atccactgtg gataaatggc aacggctagc
      421 ccccacagac caaatattaa cgcgcgatcg cttttgccga atggaccggc ataactacga
      481 ataccgttaa tcgtctgcgc gagtaaaccg caaaactcag tcaatatggt gcaaaataac
      541 atgagtatta cgagtgatgc gttactttcc ggtaaaaata aaaacggtaa atagagcgca
      601 atatcggaaa taacatcgcc agtttcattc aaaatcgccc ccagacgtgt ttgctgattg
      661 cactcacgcg ccaacatgcc atccagcgca ttgagcgcca tacggataaa aagcacgatg
      721 ggcaatagca aaaagaggat gggttgtgcc accaacacca acagcaatcc ggtaaaaaga
      781 gaaagcgcca gtgccgtaag agtgatgtga ttcgctgtaa cgtggtgctt ataaagccaa
      841 aacatcgtcg gccttaacag cgactgaaag agcggtttta tctggtagag cgtcatttat
      901 cattccgtga tattcagttt gctctatggt gcatcaattg tgatggcgga gatatcacaa
      961 cgcggagcat caacgtaaat tcggaatata tcatgatgtg gtggatggtt ttcctacaca
     1021 tctgtttgat taccgactgg atgtcagtga gggtaa
//
LOCUS       DADMHM010000394         1042 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.400, whole genome shotgun sequence.
ACCESSION   DADMHM010000394 DADMHM010000000
VERSION     DADMHM010000394.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1042)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1042)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1042
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.400"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(504..579)
                     /locus_tag="JN125_004297"
     tRNA            complement(504..579)
                     /locus_tag="JN125_004297"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(544..546),aa:Ile,seq:cat)
BASE COUNT          314 a          222 c          180 g          326 t
ORIGIN      
        1 caatagcgtt ggttaatgag catagccacg ctcctgtaac gctcacaaaa ctcatctgcc
       61 tgcggcgggt gttctggtca gtagtagatg tttaaggcgt ggcagagaca tttcatcctt
      121 actctacggc attgttctac atacattggt tgtggtactc actcatcatc agtgagcgaa
      181 cagagaatag ttcagtgatt tgagtaatta acctgattaa atgaatgggt ataataaatg
      241 ataatactct ggctttatcg ttaattactt aattccacat gtaagcaatt tgcccgcttg
      301 gcatagcggg cattttttcc aggtactttt gaatgagtac tgatggataa atacattgca
      361 gtggcgtgcc acgtaccaaa acaccagccc tcattcgaaa ccacccaccg cacttcttcc
      421 tttaaatggc gttagtcatg aaatatagac cgccatcgag taccccttga cccttaactc
      481 ttcctgatac atgaatgatg atttggtggc ccctgctgga cttgaaccag cgaccaagcg
      541 attatgagtc gcctgctgta accactgagc taaagggcct taagtatgca ataacaatac
      601 ttataaacca cgcaataaac atgatgatct tatgatgtaa atagcagatt tttatgcgtt
      661 ctcatccatc ctgggtcgtc aatacatgcg acataaaacc cgacattgcc tccattcgca
      721 aagtcgatac tcgcagtcaa caagcaaatg ttaataatta gcactatcta tagttatcat
      781 cgattcaatg atactttgta atgattttgt atctaataat ataactttat tacattagct
      841 gaagagtttt cgcatcatta tgatatctgt tacttttcac tccataaaaa taaacttcat
      901 atagcaatat attctttcat agatcttatt ctgctaatca ttagtttcgt atgagcgatt
      961 tttgacagtt gcctctccag accacatcga taattaaaaa aacagattta agcattatcc
     1021 ttttccatat aaatactgga ta
//
LOCUS       DADMHM010000395         1017 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.401, whole genome shotgun sequence.
ACCESSION   DADMHM010000395 DADMHM010000000
VERSION     DADMHM010000395.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1017)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1017)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1017
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.401"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            66..>1017
                     /locus_tag="JN125_004298"
     CDS             66..>1017
                     /locus_tag="JN125_004298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000627495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS21 family transposase"
                     /protein_id="HAY8873811.1"
                     /translation="MVTFETVMEIKILHKQGMSSRAIARELGLSRNTVKRYLQAKSEP
                     PKYTPRPAVASLLDEYRDYIRQRIADAHPYKIPATVIAREIRDQGYRGGMTILRAFIR
                     SLSVPQEQEPAVRFETEPGRQMQVDWGTMRNGRSPLHVFVAVPGYSRMLYIEFTDNMR
                     YDTLETCHRNAFRFFGGVPREVLYDNMKTVVLQRDAYQTGQHRFHPSLWQFGKEMGFS
                     PRLCRPFRAQTKGKVERMVQYTRNSFYIPLMTRLRPMGSTVDVETANRHGLRWLHDVA
                     NQRKHETIQARPCDRWLEEQQSMLALPPEKKEYDVHPGENL"
BASE COUNT          244 a          272 c          268 g          233 t
ORIGIN      
        1 gatccacacc caacgcctga aatcagatcc agggggtaat ctgctctcct gattcaggag
       61 agcttatggt cacttttgag acagttatgg aaattaaaat cctgcacaag cagggaatga
      121 gtagccgggc gattgccaga gaactggggc tctcccgcaa taccgttaaa cgttatttgc
      181 aggcaaaatc tgagccgcca aaatatacgc cgcgacctgc tgttgcttca ctcctggatg
      241 aataccggga ttatattcgt caacgcatcg ccgatgctca tccttacaaa atcccggcaa
      301 cggtaatcgc tcgcgagatc agagaccagg gatatcgtgg cggaatgacc attctcaggg
      361 cattcattcg ttctctctcg gttcctcagg agcaggagcc tgccgttcgg ttcgaaactg
      421 aacccggacg acagatgcag gttgactggg gcactatgcg taatggtcgc tcaccgcttc
      481 acgtgttcgt tgctgttccc ggatacagcc gaatgttgta catcgaattc actgacaata
      541 tgcgttatga cacgctggag acctgccatc gtaatgcgtt ccgcttcttt ggtggtgtgc
      601 cgcgcgaagt gttgtatgac aatatgaaaa ctgtggttct gcaacgtgac gcatatcaga
      661 ccggtcagca ccggttccat ccttcgctgt ggcagttcgg caaggagatg ggcttctctc
      721 cccgactgtg tcgccccttc agggcacaga ctaaaggtaa ggtggaacgg atggtgcagt
      781 acacccgtaa cagtttttac atcccactaa tgactcgcct gcgcccgatg gggagcactg
      841 tcgatgttga aacagccaac cgccacggtc tgcgctggct gcacgatgtc gctaaccaac
      901 gaaagcatga aacaatccag gcccgtccct gtgatcgctg gctcgaagag cagcagtcca
      961 tgctggcact gcctccggag aaaaaagagt atgacgtgca tcctggtgaa aatctgg
//
LOCUS       DADMHM010000396         1009 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.402, whole genome shotgun sequence.
ACCESSION   DADMHM010000396 DADMHM010000000
VERSION     DADMHM010000396.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1009)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1009)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1009
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.402"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            201..395
                     /gene="bfd"
                     /locus_tag="JN125_004299"
     CDS             201..395
                     /gene="bfd"
                     /locus_tag="JN125_004299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin-associated ferredoxin"
                     /protein_id="HAY8873812.1"
                     /translation="MYVCLCNGVSDKKIRQAVRQFHPQSFQQLRKFIPVGNQCGKCIR
                     AAREVMQDELMQMPEFKEIA"
     gene            468..944
                     /gene="bfr"
                     /locus_tag="JN125_004300"
     CDS             468..944
                     /gene="bfr"
                     /locus_tag="JN125_004300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterioferritin"
                     /protein_id="HAY8873813.1"
                     /translation="MKGDVKIINYLNKLLGNELVAINQYFLHARMFKNWGLMRLNDVE
                     YHESIDEMKHADKYIERILFLEGIPNLQDLGKLGIGEDVEEMLQSDLRLELEGAKDLR
                     EAIAYADSVHDYVSRDMMIELLADEEGHIDWLETELDLIGKIGLQNYLQSQIKVKD"
     gene            complement(941..>1009)
                     /locus_tag="JN125_004301"
     CDS             complement(941..>1009)
                     /locus_tag="JN125_004301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HAY8873814.1"
                     /translation="PFRPFLAAAGFVIGWDSLLIGR"
BASE COUNT          300 a          206 c          231 g          272 t
ORIGIN      
        1 gctaaagttc tgggctaatt acacgttaat tagttttgaa ttgaaaaggg cgcttcggcg
       61 ccctttttgc tgcccgtaat ttgagctcga aatatttagt cgtaattttg ctcgctgaac
      121 tatggcgcaa ataaaactgt gctattgtaa tcataaccat tctcatttac actttgcgca
      181 gaatttgaac gggagcaatc atgtacgttt gtttgtgtaa tggtgtaagt gacaaaaaaa
      241 ttcgccaggc agtccgtcag tttcatccgc aatctttcca acaattgcgt aagtttattc
      301 ctgtgggaaa tcaatgcggt aagtgcattc gcgccgcgcg cgaagtgatg caggacgagt
      361 tgatgcagat gccagaattt aaagagattg cctgaagacc acgcttattt tttgacatcc
      421 cgctagcccc atctacgctc taatagtgga agcggaggga ctataaaatg aaaggtgatg
      481 ttaaaatcat aaattatctc aataaactat tgggaaatga gcttgtcgca atcaatcagt
      541 attttctcca tgcccggatg tttaaaaact ggggcctgat gcgtctcaat gacgtcgaat
      601 accatgaatc catcgatgag atgaaacacg ctgataaata tatcgagcgt attttgtttt
      661 tagaaggaat ccccaactta caggatttag gcaaactggg gattggtgaa gatgtcgagg
      721 agatgctgca atccgacctg cgattagaac tggaaggcgc gaaggatctg cgtgaggcta
      781 tcgcatatgc cgacagcgtt catgactatg ttagccgcga tatgatgatc gagctccttg
      841 ctgatgaaga aggtcatatc gactggctcg aaactgaact ggatctcatc ggtaaaattg
      901 gcctacaaaa ttacctgcaa tcacaaatta aagttaaaga ttaacggcct atcagcaaac
      961 tatcccagcc tataacgaaa cccgcagccg ccagaaatgg cctaaaagg
//
LOCUS       DADMHM010000397         1005 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.403, whole genome shotgun sequence.
ACCESSION   DADMHM010000397 DADMHM010000000
VERSION     DADMHM010000397.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1005)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1005)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1005
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.403"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(1..357)
                     /locus_tag="JN125_004302"
                     /pseudo
     CDS             complement(1..357)
                     /locus_tag="JN125_004302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310800.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="integrase"
     gene            complement(357..560)
                     /locus_tag="JN125_004303"
     CDS             complement(357..560)
                     /locus_tag="JN125_004303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4224 domain-containing protein"
                     /protein_id="HAY8873815.1"
                     /translation="MSSLFLTEDELLILTGCKYASHQRKWLMENGLPFYTNRSGKPIV
                     SRDLFTCNKTLPPREVEPNFGAI"
     gene            complement(619..978)
                     /locus_tag="JN125_004304"
     CDS             complement(619..978)
                     /locus_tag="JN125_004304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309530.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exoribonuclease"
                     /protein_id="HAY8873816.1"
                     /translation="MTHPRQYGSCCTLTALLQLREFIDENSGEFFVQVWGNGTNFDNT
                     ILRRSYERQGIPCPWRYYNDRDVRTIVELGKAIDFDARTAIPFEGERHNALDDARYQA
                     KYVSAIWQKLIPSQADF"
BASE COUNT          241 a          227 c          231 g          306 t
ORIGIN      
        1 cccctctctt gtccatgtat cgacggatgt gttctggttt tatggaatct gccggcacct
       61 taccgaatac ggcaagcaac ttttttgatg ttgcagataa tctttttgtg ttcttggact
      121 gaggtcactg taataggcgc tggcgaggaa tttttcccac aagcgaccga atgtcattgc
      181 acgatcgcga ttatttacag tttcctcata ctttttccat aaagcagcta aaccatcctt
      241 gatggcggtt agtgttacag attcgctgga tgttggtttc catacataac tatatttatt
      301 tgggtataca tttggaggta atttttcgtg ttcaggattt ttccttcgtc ttcccatcag
      361 atcgcaccaa aattcggctc tacctcgcgt ggtggtaaag ttttattgca ggtaaataga
      421 tcccggctga caatcggttt gccactacga ttggtataga acggaagccc gttttccatt
      481 aaccattttc gctggtggct tgcatatttg cagcccgtta atattagcaa ttcatcttcg
      541 gttaaaaata agctgctcat agctatatct cataaccgcc gctaactata tacggttagc
      601 ggcaattagg gttgaacatt aaaaatcagc ctgactcggg atcagttttt gccagatagc
      661 tgaaacgtat tttgcctggt aacgagcgtc atcaagtgca ttatggcgct caccttcgaa
      721 tggaatagcc gttctggcat cgaagtctat ggctttcccc agctcaacga ttgtgcgtac
      781 atcgcgatcg ttgtagtaac gccacgggca ggggatcccc tgccgttcgt atgaacggcg
      841 caaaatcgtg ttgtcgaagt tggttccatt tccccagacc tgaacaaaaa attcaccgga
      901 gttttcgtcg ataaattccc gcaattgtaa cagtgcagta agcgtgcagc aagaaccgta
      961 ttgacgggga tgtgttattc agtcggcagt gctacgcgcc agggg
//
LOCUS       DADMHM010000398          984 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.404, whole genome shotgun sequence.
ACCESSION   DADMHM010000398 DADMHM010000000
VERSION     DADMHM010000398.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 984)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 984)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..984
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.404"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..741
                     /locus_tag="JN125_004305"
     CDS             <1..741
                     /locus_tag="JN125_004305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001063816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110-like element ISSso6 family transposase"
                     /protein_id="HAY8873817.1"
                     /translation="DLARAWASARDDLRHARQRLKSFLLVHGVHYVGRADWGPAHRRW
                     LSKYSFESPWRQLAFDEHRRTIEDRQAQCERLESALKEAVTEWRLYPVVEALQAMRGI
                     QFITAVGLISELGDLTRFEHPRQLMSWFGITPSEYSSGGSRHQGSITKAGNSYARKLL
                     VEAAWSYRHPARISPAIQKRQENLPRPVIDRAWDAQLRLCKRYRKLQAKGKNVNITIV
                     AVARELAGFIWDMGRIAMSVAQQPQCHK"
BASE COUNT          275 a          232 c          261 g          216 t
ORIGIN      
        1 gatttggccc gggcatgggc atctgcccgc gatgatttac ggcatgcaag gcaacgtctg
       61 aaatcgtttc ttctggttca tggggtccat tatgtcgggc gagcagattg gggccctgca
      121 caccgacgct ggctcagcaa atactcattc gaaagtccct ggcgacaatt agcttttgac
      181 gaacaccgtc gtacaataga agaccggcag gcacaatgtg aacggctgga atccgccctg
      241 aaggaggccg ttaccgaatg gaggctgtat ccggtagtag aggcgctgca agccatgcga
      301 gggattcagt ttattactgc ggttggatta atttctgaac tgggtgatct gacccgtttt
      361 gaacatccac gacaactgat gtcatggttt ggtatcacgc catcagaata ttcatcgggt
      421 ggaagcagac atcagggcag cattaccaaa gccggaaaca gctatgccag aaagctattg
      481 gtcgaggcag cgtggagtta ccgtcatccg gcacgcatca gtccggcaat acaaaaaagg
      541 caggaaaatt taccccgccc cgtcattgac agagcatggg atgctcaact caggctttgt
      601 aagaggtatc gaaaacttca ggccaaagga aagaatgtca atattacaat tgttgctgtt
      661 gcacgtgagc tggcgggttt tatctgggat atgggccgaa tagcaatgtc tgtcgcacaa
      721 caaccacaat gtcacaaata aaaaatgaga ataaccagtt ccctgaaggc gacgtagccc
      781 ggtacaagag taacccacgt tagcgcttgg cgacggcgga acaaagctga ttcgcgacgt
      841 aagaaagtgg caggctcata tgacggacct ctgtaatgcg gtatccaacc cgcgaatatc
      901 agcgtgattc accgtcggat ttactgctac gtcgccctca gggaattaaa cctaaaaaga
      961 aaatcgtcaa aattagagat tccg
//
LOCUS       DADMHM010000399          979 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.405, whole genome shotgun sequence.
ACCESSION   DADMHM010000399 DADMHM010000000
VERSION     DADMHM010000399.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 979)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 979)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..979
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.405"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(1..979)
                     /locus_tag="JN125_004306"
                     /pseudo
     CDS             complement(1..979)
                     /locus_tag="JN125_004306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001493460.1"
                     /note="internal stop; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="PstS family phosphate ABC transporter
                     substrate-binding protein"
BASE COUNT          265 a          254 c          230 g          230 t
ORIGIN      
        1 tgccacttct gtttcctgcg gcgagatcat gcggacattt ttcatgacct gggattgcat
       61 caccgtctgg ctaccagagt cttccgggcg ttgctaggtc tggatctcct gatcgttacc
      121 gccaacagta cgccagttgg taattgcacc actgaagatg tcacgcacct gttgttcagt
      181 cagggaatta accggattat ccgcattgac gatgaaaaca aacgcttcac gggcaaaagg
      241 cgtgtacagc aaagtaatgc ccgattcctc agcgcgtttt ttctgcccac cggaaggttg
      301 cgccacaaaa ataatatcag catcaccttt aacaatcctg ttatacgcat cgggggtacg
      361 agagctctcc ggatattccc tggtgtgaaa atcttccggt ataacgctta aagcataaaa
      421 tgcagaggca taaattgggt acgccgccgt agcaccatcg agtcgcagcc agttttgcgt
      481 aaactgaatt tgcggtttac cacgcagtgg tgtcagttga ttattgagtt tatcgggtcg
      541 ccaggcccag gtatcaatat tttcgcgcac accgacgccg ggattgagct gtttatataa
      601 ataaccctga taaccagcga caaaaccaag catgagaagg ataaacagga gggaattacg
      661 gcaacgtagc ccggatgtac cggttaaagg atgtctggtt ggccggccgt accccagcga
      721 aaaactgata tgcgcgccaa cgggtataat gactatccac cagtactcac ctccgactac
      781 tgagactaac aaaacgccca gccaggggag cataagatca gccaaccaac ccgatcccat
      841 ctggtgaaat tgataatctg ccagatgcag cgcgattatc cagccaacca ggattaataa
      901 accgggtact aaaaaaagac attgtcgcca gacggctatt tctctttttt ctggtgcact
      961 atcgcctgcc catactcgc
//
LOCUS       DADMHM010000400          967 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.406, whole genome shotgun sequence.
ACCESSION   DADMHM010000400 DADMHM010000000
VERSION     DADMHM010000400.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 967)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 967)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..967
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.406"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            1..484
                     /locus_tag="JN125_004307"
                     /pseudo
     CDS             1..484
                     /locus_tag="JN125_004307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000225871.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="fimbria/pilus periplasmic chaperone"
     gene            514..>967
                     /locus_tag="JN125_004308"
     CDS             514..>967
                     /locus_tag="JN125_004308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000755097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial protein"
                     /protein_id="HAY8873818.1"
                     /translation="MKKVFAKSLLVAAMFSVAGSALAVQKDITVTANVDAALDMTQTD
                     NTALPKAVEMQYLPGQGLQSYQLMTKIWSNDVTKDVKMQLVSPAQLVQSLDASKIVPL
                     TVTWGGEEIKADAATTFTATKIFASDALTNGSLAKNLMFAQTTKGVLET"
BASE COUNT          314 a          190 c          210 g          253 t
ORIGIN      
        1 cggtgatgca aatcatctgg ttgttatgcc acctaaattc gctttaccag ccggtagtag
       61 caaaactgtg cgctttgttg caatggaacc agagcaaaaa gaaaaaaatt aacgcgttaa
      121 atttgaagcg gttcccagta ttgatgacgt tgccacagat aaaaaagatt tctctatgca
      181 gttaacagtt agcttaattt gggggattgt tgttagtgtt ccacctcagc aacctattgc
      241 taagttagaa gtaaatgctg cccaaaaatt agttaatgca gggaatcaac gcttaaagat
      301 tttaacgatc gcttattgta aaaataatag caaagaaaat tgtaagatac agaccgtaaa
      361 taaaaacatc ttccctggtc aggaaagaaa tcttgaaagc atatctggct acgacaaaat
      421 cgttgtcaaa tataataact ggatcaccaa agataatggc gagtttgaac tggcggtcca
      481 ttaattatca ttgtaataaa cgaaggaata gtaatgaaaa aggtatttgc aaaatctctt
      541 ctggtcgcag cgatgttttc tgttgcaggc tccgcattgg cagtacaaaa ggatattact
      601 gtaacggcca acgttgatgc cgctctggat atgacacaga ccgataacac cgcgttgccg
      661 aaagcagtag aaatgcaata tctgccgggg cagggtctgc aatcttacca gttgatgacc
      721 aaaatctggt ctaacgacgt taccaaagat gtaaaaatgc agttagtttc cccggcgcaa
      781 ctggttcaaa gcctggatgc tagcaagatt gttccgctga cagtaacctg gggcggtgaa
      841 gaaattaaag ctgatgcggc aaccactttt accgcaacca aaatctttgc ttccgatgcg
      901 ttaactaacg gttctctggc taaaaacctg atgtttgctc aaaccaccaa aggtgttctg
      961 gagacag
//
LOCUS       DADMHM010000401          967 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.407, whole genome shotgun sequence.
ACCESSION   DADMHM010000401 DADMHM010000000
VERSION     DADMHM010000401.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 967)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 967)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..967
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.407"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(25..100)
                     /locus_tag="JN125_004309"
     tRNA            complement(25..100)
                     /locus_tag="JN125_004309"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(63..65),aa:Arg,seq:tcg)
     gene            complement(110..182)
                     /locus_tag="JN125_004310"
     tRNA            complement(110..182)
                     /locus_tag="JN125_004310"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(147..149),aa:Ile,seq:cat)
     gene            complement(232..727)
                     /locus_tag="JN125_004311"
                     /pseudo
     CDS             complement(232..727)
                     /locus_tag="JN125_004311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001699034.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
BASE COUNT          209 a          291 c          226 g          241 t
ORIGIN      
        1 taacaacgca ggatacagat aatgaaccgc cttcggggac ccgaactccg cgcaaccagc
       61 ttcgaaggct ggcgctcttt cctgatgagc taatggcggt atgtgatagt ggcccttgct
      121 ggatttgaac cagcgacctg gcgattatga gtcgctcgct ctcaccactg agctaaaggg
      181 ccgggagcag aataataatg gtgcgtaatt aattctgcaa tctcatccgt ttcaaacgat
      241 taaatcctga acttccctga ctgtctgctc aaaacgtcct gtctccagtt caacgccaat
      301 cgcacgacgc ccgagcgcca gtgccgcttt taccgttgaa cccgatccca tgaaaaaatc
      361 cgcaaccaga tcaccaggac gactacttgc gctgattatc tgctgcagca tttctgccgg
      421 tttttcgcac ggatgtttcc cgggatagaa ctgcaccggt ttatgtgtcc acacatccgt
      481 gtacggcacc tgcgccgtca caccaaaata ccgccgcaga tgtttatatt cactctgcag
      541 ctccgcatac tgtcggttca gtgaagtata cgtatccacc agctggtggt ggggcttttc
      601 cagttccccc cgctgatgct tctcttctgc caccctggca aacagtgcct gtaatttcag
      661 ataatcgctt tcgttcggca actgccactg actggcactg actggcactg aaccagtgcg
      721 acaccatgtt tttctttcct gtggcatctg caatctgttt tgccgttatc cccagggccg
      781 cgcatgcatc acgaaagtaa gaaatcagcg gggccatcac atgctgtttc agtgccctgc
      841 ccttcgcctc atacccggca tctttcggac gatacggccc ctgataatgt tccgcgaaca
      901 gaatgcgctc tgtggcgggg aaatacgccc gcaggctttc cttgttgcac ccgttccagc
      961 gtccgga
//
LOCUS       DADMHM010000402          949 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.408, whole genome shotgun sequence.
ACCESSION   DADMHM010000402 DADMHM010000000
VERSION     DADMHM010000402.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 949)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 949)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..949
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.408"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(41..117)
                     /locus_tag="JN125_004312"
     tRNA            complement(41..117)
                     /locus_tag="JN125_004312"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(81..83),aa:Arg,seq:tct)
     gene            complement(119..195)
                     /locus_tag="JN125_004313"
     tRNA            complement(119..195)
                     /locus_tag="JN125_004313"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(159..161),aa:Ile,seq:cat)
     gene            complement(385..939)
                     /locus_tag="JN125_004314"
     CDS             complement(385..939)
                     /locus_tag="JN125_004314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1133 family protein"
                     /protein_id="HAY8873819.1"
                     /translation="MIYPTNTGKSGEHLRLTTLESVWIQGKLRMWGRWSYIGGGKTGN
                     MFNQLLASKKLTKTAINEALRRMKKAGLNKSELEAFLRDMINGKQKSWLAHCTDAEAL
                     CIDRVISEVLAEHPGLISVLRQRYEGRGMTKRKMAELLNDAHPKWSLRTCERRIEHWL
                     KVAEFILYKPMVMAFGIEKKVIAF"
BASE COUNT          230 a          267 c          191 g          261 t
ORIGIN      
        1 ttacaagtca gttgctctgc ctgctgagct aagtcggcgc tggcccacca ccgaggactc
       61 gaacctcgca ccgtcaactt agaaggttga tgctctatcc ggatgagcta gtggtggttg
      121 gtggcccttg ctggacttga accagcgacc tggcgattat gagtcgctcg ctctgaccaa
      181 ctgagctaaa gggccggagg cagaataata accatatgtc atcacatctg caaactcatc
      241 tgaccaccag cacgtttaac gtcctgtgcc gtttttcagg tataaaaaaa cccgcataaa
      301 gcgggctctt tcaaatgtcc atgtctgcta ttcgcctcgc ggtacagctt tgcgaagcgt
      361 acaagaattg aagcagtttt tacgtcaaaa agcaataact tttttctcta taccaaaagc
      421 cataaccatt ggtttgtaca aaataaattc tgccaccttt agccaatgct caatgcgtct
      481 ttcacaggtt cttaaactcc atttcgggtg tgcatcattc agcagttcag ccattttgcg
      541 tttggtcatc ccccgcccct cataccgttg ccgaaggacg ctaatcaatc ctggatgctc
      601 tgccagcacc tcacttatga cccgatcaat acataacgcc tctgcatcag tacaatgcgc
      661 cagccagctc ttttgcttac cgttaatcat atcccgcaaa aaagcctcaa gttcagactt
      721 gttcagacct gcttttttca tcctccggag cgcctcgtta attgccgttt ttgtcagctt
      781 tttagaggcc aacaactggt tgaacatatt ccccgtctta ccgccgccaa tatacgacca
      841 gcgcccccac atgcgcagtt ttccctgaat ccagacactt tccagcgtgg tgagacgaag
      901 gtgttccccg cttttgcctg tatttgttgg gtaaatcata aataacctt
//
LOCUS       DADMHM010000403          946 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.409, whole genome shotgun sequence.
ACCESSION   DADMHM010000403 DADMHM010000000
VERSION     DADMHM010000403.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..946
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.409"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            121..946
                     /locus_tag="JN125_004315"
                     /pseudo
     CDS             121..946
                     /locus_tag="JN125_004315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416847.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          356 a          162 c          169 g          259 t
ORIGIN      
        1 gctattgtgc gctcatacac tcaaattaaa gataggttct aaataaatga gcgttttttg
       61 atagtctatt tcattaggta atatatattt gtaacaaatc aatcaaaatg gaataaaatc
      121 atgctaccat ctatttcaat caacaatacc agcgcaactt acccagaatc cattaatgaa
      181 aataacaatg atgaagttaa tggattagta caagagctca aaaacctttt taatggtaag
      241 gaaggaataa gcacctgtat taaacatcta cttgagttta taaaaaacgc catatgagta
      301 aacgacgatc cttatagatt taatattaat aattcctcag ttagttatat tgatattggc
      361 tccaatgata cagaccatat tactattggt atcgacaacc aagaaccaat agaattacct
      421 gcgaactata aagacaaaga actcgtccgt actatcatta atgacaacat agttgagaag
      481 actcatgata tcaataacaa ggaaatgatc ttcagcgcat taaaagaaat atatgatgga
      541 gatcctagtt ttatcttcga taagatatca cacaaactca gacatacggt aacggaattt
      601 gatgagagcg ggaaaagcga accaacggac ttatttacct ggtacggtaa agataaaaaa
      661 ggcgactctc tcgctattgt aattaaaaat aaaaacggaa atgattactt atctctcggt
      721 tactacgatc aggacgacta ccacattcaa agaggaattc gtattaatgg tgatagtctc
      781 acccaatatt gtagtgaaaa cgccaggagt gcttcagcgt ggtttgaaag cagtaaagct
      841 atcatggcag aatcatttgc aacaggttcc gatcatcagg ttgtaaacga gctcaacggg
      901 gaaagactga gagaacctaa cgaagttttt aaacgtttag gtcgag
//
LOCUS       DADMHM010000404          942 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.410, whole genome shotgun sequence.
ACCESSION   DADMHM010000404 DADMHM010000000
VERSION     DADMHM010000404.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 942)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 942)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..942
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.410"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..302)
                     /locus_tag="JN125_004316"
     CDS             complement(<1..302)
                     /locus_tag="JN125_004316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial-like protein"
                     /protein_id="HAY8873820.1"
                     /translation="MSAFKKSLLVAGVAMILSNNVFADEGHGIVKFKGEVISAPCSIK
                     PGDEDLTVNLGEVADTVLKSDQKSLAEPFTIHLQDCMLSQGGTTYSKAKVTFTTANT"
     gene            complement(586..936)
                     /gene="ubiK"
                     /locus_tag="JN125_004317"
     CDS             complement(586..936)
                     /gene="ubiK"
                     /locus_tag="JN125_004317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_708853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinone biosynthesis accessory factor UbiK"
                     /protein_id="HAY8873821.1"
                     /translation="MTYPYRTTMVLNTYQYRETTMIDPKKIEQIARQVHESMPKGIRE
                     FGEDVEKKIRQTLQAQLTRLDLVSREEFDVQTQVLLRTREKLALLEQRMSELENRSTE
                     IKKQPDPETLPPTL"
BASE COUNT          271 a          170 c          188 g          313 t
ORIGIN      
        1 gtattcgctg tggtgaaagt aaccttcgct tttgaataag tggttccacc ctggctcaac
       61 atgcagtctt gcaggtgaat agtgaaaggc tcagccaaag atttctggtc gcttttcaga
      121 acggtatctg ctacttcacc cagatttaca gttaagtctt cgtcacctgg tttaattgaa
      181 catggagcag agataacttc acctttaaat ttaacaatgc cgtgaccttc gtcagcaaat
      241 acgttattgg aaagaatcat tgctacgcca gcaacaagaa gtgacttttt aaaagcagac
      301 ataatattcc tttatataaa tataagtaga aaatgaatga ttagtaactg ttatttaagg
      361 attgctaatc attcaaatat tatattttac ttttcgggtt ttatgaaatt agtttatcta
      421 aatatggatt aagtaaaact taaaaaaata cataacaatt atattttcaa ttgcactcat
      481 tcatttttgt gatgatattc tgaatggaat taagcgataa ggtaatagaa agcactgtaa
      541 attagaagat taattcataa tttacagtgc attaaagaca aatgtttaca gcgttggggg
      601 gagagtctct ggatctggct gctttttaat ctcagtactg cgattttcca gttcgctcat
      661 tctttgttca agcagcgcca gtttctcacg agtccgtaac aggacttgcg tttggacgtc
      721 gaactcttca cggcttacaa ggtcgaggcg cgtcagctga gcttgtaggg tttggcggat
      781 ttttttctcc acatcttccc cgaactccct gattccttta ggcattgatt cgtgaacctg
      841 gcgagcgatt tgctcaattt ttttcgggtc aatcattgta gtttccctgt actgataggt
      901 gttgagtacc attgtagtgc gataagggta agtcataaac ca
//
LOCUS       DADMHM010000405          936 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.411, whole genome shotgun sequence.
ACCESSION   DADMHM010000405 DADMHM010000000
VERSION     DADMHM010000405.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 936)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 936)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..936
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.411"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(44..120)
                     /locus_tag="JN125_004318"
     tRNA            complement(44..120)
                     /locus_tag="JN125_004318"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(84..86),aa:Arg,seq:tct)
     gene            complement(134..210)
                     /locus_tag="JN125_004319"
     tRNA            complement(134..210)
                     /locus_tag="JN125_004319"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(174..176),aa:Arg,seq:tcg)
     gene            complement(218..293)
                     /locus_tag="JN125_004320"
     tRNA            complement(218..293)
                     /locus_tag="JN125_004320"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(258..260),aa:Ile,seq:cat)
     gene            complement(334..>936)
                     /locus_tag="JN125_004321"
     CDS             complement(334..>936)
                     /locus_tag="JN125_004321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HAY8873822.1"
                     /translation="ALKQHVMAPLISYFRDARAALGITAKQIADATGKKNMVSHWFSA
                     SQWQLPNESDYLKLQALFARVAEEKHRRGELEKLHHQLVDTYTSLNRQYAELLSEYKH
                     LRRYFGVTVQVPYTDVWTHKPVQFYPGKHPCEKPAEMLQQIISASSRPGDLIADFFMG
                     SGSTVKAALALGRRAIGVELETERFEQTVREVQDLVSQNG"
BASE COUNT          217 a          270 c          224 g          225 t
ORIGIN      
        1 tttaaaaaaa aagcccgcaa aagcgagcca gggaaaataa gtgtggcgcg ttgtactgga
       61 ttcgaaccag tgaccgattg cttagaaggc aattgctctg tccggctgag ctaacaacgc
      121 atgatgcaga taatggaccg ccatcgggga cttgaacccc gcgcagccag cttcgaaggc
      181 tggcgctctt tcctgatgag ctaatggcgg tatgtgatgg tggcccttgc tggatttgaa
      241 ccagcgacct ggcgattatg agtcgctcgc tctcaccact gagctaaagg gccgggagcc
      301 gcataataac gactcgtaat taattcttca atatcatccg ttctggctga ctaaatcctg
      361 tacttcccga accgtctgct caaaacgttc agtctccagc tcaacgccaa ttgcacgacg
      421 cccgagcgcc agtgccgctt tcactgtcga acccgacccc atgaaaaaat ctgcaatcag
      481 gtcacccgga cgactgctag cgctgattat ctgctgcagc atttctgccg gtttttcgca
      541 cggatgtttc ccgggataga actgcaccgg tttatgcgtc cacacatcgg tatacggcac
      601 ctgcaccgtc acgccaaaat accgccgcag atgtttatat tcactcagca gctccgcata
      661 ctgccggttc agtgaggtat acgtatccac cagctggtgg tggagctttt ccagttcacc
      721 acgccgatgc ttctcttctg ccacccgggc aaacagcgcc tgtaatttca gataatcgct
      781 ttcattcggc aactgccact gactggcact gaaccagtgc gacaccatgt ttttctttcc
      841 tgtggcatct gcaatctgtt ttgccgttat ccccagggca gctcgcgcat cacgaaagta
      901 agaaatcagc ggggccatca catgctgttt cagtgc
//
LOCUS       DADMHM010000406          903 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.412, whole genome shotgun sequence.
ACCESSION   DADMHM010000406 DADMHM010000000
VERSION     DADMHM010000406.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 903)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 903)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..903
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.412"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            77..202
                     /locus_tag="JN125_004322"
     CDS             77..202
                     /locus_tag="JN125_004322"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HAY8873823.1"
                     /translation="MAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR"
     gene            238..>903
                     /locus_tag="JN125_004323"
     CDS             238..>903
                     /locus_tag="JN125_004323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707861.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HAY8873824.1"
                     /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET
                     YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ
                     TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM
                     ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGHCYDNAPMESFWGTL
                     KNES"
BASE COUNT          255 a          220 c          243 g          185 t
ORIGIN      
        1 atcccttcct gaaggcactt taggacaatg ggttaccgcc gccagaaaag ggctcggtac
       61 tcctggttcc cgcacggtgg ctgaactgga atctgaaatt ctgcaactgc gtaaggcgtt
      121 aaatgaagct cgccttgagc gagatatatt aaaaaaagca acagcgtatt ttgcacagga
      181 gtcgctgaaa aatacgcgtt aatcgaacaa tggcgacaac aatttcccat tgaagcgatg
      241 tgtcaggtat ttggtgtatc caggagcggt tattacaact gggtacagca tgaaccctca
      301 gacagaaaac aaagtgatga gcggctaaaa ctggagatta aggtggcaca tatccgcact
      361 cgcgaaacat atggaacccg gcggctccag acggagctgg cagagaatgg catcatcgtt
      421 ggtcgtgacc gactggcacg tcttcgtaag gagctaaggc tacgctgtaa gcagaaacgc
      481 aagttcagag cgactacgaa cccgaaccac aatctgccag ttgcgccaaa tctgctgaac
      541 cagacgttcg ctcctacagc accaaatcag gtctgggtgg cggacctgac gtatgttgcc
      601 acacaggagg gatggttgta cctcgctggc atcaaagatg tttatacgtg cgaaattgtc
      661 ggctacgcca tgggagagcg catgacaaaa gagctgacag gtaaagccct gtttatggcg
      721 ctcaggagcc agcgcccacc tgccgggcta atccaccact ctgatcgagg ttcacagtac
      781 tgcgcatacg attaccgggt catacaggag cagtctggtc tgaaaacatc aatgtcgcgt
      841 aaaggtcact gttacgacaa cgctccgatg gaaagcttct ggggaacgct gaaaaatgag
      901 agc
//
LOCUS       DADMHM010000407          903 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.413, whole genome shotgun sequence.
ACCESSION   DADMHM010000407 DADMHM010000000
VERSION     DADMHM010000407.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 903)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 903)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..903
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.413"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..>903)
                     /locus_tag="JN125_004324"
     CDS             complement(<1..>903)
                     /locus_tag="JN125_004324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HAY8873825.1"
                     /translation="VNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGTILFQGK
                     EIDFYSAKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRETKAI
                     FDELDIDIDPRARVGTLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTI
                     IRKLKERGCGIVYISHKMEEIFQLCDEVTVLRDGQWIATEPLAGLTMDKIIAMMVGRS
                     LNQRFPDKENKPGEVILEVRNLTSLRQPSIRDVSFDLHKGEILGIAGLMGAKRTDIVE
                     TLFGIREKSAGTITLHGKKINNHNA"
BASE COUNT          232 a          222 c          192 g          257 t
ORIGIN      
        1 ggcattatgg ttattgatct ttttgccgtg caacgtaatg gtgccggccg atttctcgcg
       61 aataccaaat aacgtctcaa caatatcggt acgtttcgcc cccatcagcc cggcaatacc
      121 gaggatctcc cctttatgca gatcaaacga gacatcacgg atcgacggct ggcgcagtga
      181 cgtcaggtta cgcacctcga ggatgacttc gcccggcttg ttttctttgt cagggaaacg
      241 ctggttaaga gaacgcccaa ccatcatggc gatgatcttg tccatcgtca gtcctgccag
      301 cggttcggtg gcaatccact gaccgtcgcg caatacggta acttcatcac ataactggaa
      361 gatttcctcc attttatgcg agatataaac aataccgcag ccgcgctctt ttaatttacg
      421 aataatagtg aacagatgat tgacctcttt ttcggttaac gaagaagtcg gttcatccat
      481 aatcacaatt ttcgcgttat aggaaaacgc tttggcgatt tcgatcatct gcatttgcga
      541 aacagataat gtgccgacgc gcgcacgcgg atcgatatca atatccagtt catcaaaaat
      601 cgctttggtt tcgcggtaca ttttgtcctg atcgacaaac atgcctttgg tggggtatcg
      661 cccaagccac atgttgtcca tcaccgaacg ttgtaatacc aggtttaact cctggtgtac
      721 catcgaaata ccattttcca gtgcttcttt ggccgaatag aaatcgatct ctttaccctg
      781 gaataaaatg gtgccggagt ctttttgata aataccaaac aagcatttta ataatgttga
      841 ttttcctgcg ccgttttccc ccattaatgc atggatagaa tgtggccgga cttttaaatt
      901 aac
//
LOCUS       DADMHM010000408          896 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.414, whole genome shotgun sequence.
ACCESSION   DADMHM010000408 DADMHM010000000
VERSION     DADMHM010000408.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 896)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 896)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..896
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.414"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..189)
                     /locus_tag="JN125_004325"
     CDS             complement(<1..189)
                     /locus_tag="JN125_004325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1737 domain-containing protein"
                     /protein_id="HAY8873826.1"
                     /translation="MVERTMAFKHYDVVRAASPSDLAEKLTHKLKEGWQPFGSPVAIT
                     PYTLMQAIAAEGAVISATS"
     gene            435..770
                     /gene="iraM"
                     /locus_tag="JN125_004326"
     CDS             435..770
                     /gene="iraM"
                     /locus_tag="JN125_004326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_707425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-adapter protein IraM"
                     /protein_id="HAY8873827.1"
                     /translation="MKWIVIDTVIQPSCGISFSVIWSKIKLIIWYQSDAFLPPESIFT
                     LTHTGIMLNNKVLPVTIYNVVPFNKTFWNLIKNSQECPTNTDNVLNECFNNRCTLQIC
                     PYGLKQQSP"
BASE COUNT          307 a          203 c          153 g          233 t
ORIGIN      
        1 gctggtggcg ctgattactg caccttctgc tgcaatcgcc tgcatcagag tataaggggt
       61 tatggccacc ggactaccaa acggctgcca gccctctttc agtttatgtg tcagcttttc
      121 cgcaagatct gacggcgacg ccgccctgac aacatcatag tgtttaaatg ccatggttct
      181 ttccaccatc tgaaaaatga ttctttaaaa tacctgacat gtaatacaga aaaaacacaa
      241 aaccatacct taaataaaaa cctcatcatc aagcagatat gcatggataa actacaagac
      301 gagatataaa ccaccctgca tttaaataaa caataaacaa catcagaaaa ataattctgc
      361 tctatggttt acattcaaaa atatcattta tacttttcag aacatcacca gcaatgcata
      421 aacaaggaaa ccaaatgaag tggattgtga ttgatacagt tatccagcca tcatgcggaa
      481 tatctttttc agtcatatgg agtaaaataa aattaataat ctggtatcaa tcggatgctt
      541 tcttacctcc tgaaagtata tttacactga ctcacacagg catcatgctc aataacaaag
      601 tgctacctgt aaccatttac aacgtagtac cattcaataa aacattctgg aatttaatca
      661 aaaacagcca ggaatgccct acaaatacag ataacgtatt gaatgaatgc tttaataacc
      721 gttgcactct gcaaatatgt ccttatgggc taaaacaaca aagtccataa ggagtttact
      781 cacatctgac aaaatcaata taaacagccc ctccggagag gggctggaga gtggcgctat
      841 gtgccattgc atggtgccgg gtgcctcccg gtgaattcag taccagcacc tgaatc
//
LOCUS       DADMHM010000409          895 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.415, whole genome shotgun sequence.
ACCESSION   DADMHM010000409 DADMHM010000000
VERSION     DADMHM010000409.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 895)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 895)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..895
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.415"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(348..614)
                     /locus_tag="JN125_004327"
     CDS             complement(348..614)
                     /locus_tag="JN125_004327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873828.1"
                     /translation="MLTQTIFPCLPQKQENIILEVSNPVLLSSTVTTDGYTVFNKKAA
                     IYELQIPATNRTKTLKFTATEMQWLTKINEVGIVEKQSQRHSNI"
     gene            complement(796..>895)
                     /locus_tag="JN125_004328"
     CDS             complement(796..>895)
                     /locus_tag="JN125_004328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY8873829.1"
                     /translation="AVAIEHYNENHPHSALGYLSPREYRRQRVMST"
BASE COUNT          257 a          156 c          171 g          311 t
ORIGIN      
        1 ccccccccaa agccgtctat gggaaggagt ctgctgttat tccagagaat ggtaattcag
       61 tcatatattt ctccatctat gacttgtcaa taccatcctg atatttgtgg gtcagcaata
      121 tattctacta aaaggtattt aaggtcattg cgtccctgca ctcgaataat ggtgaagaaa
      181 gcatgatgaa tatatcacga taacgttcag tatgtatcga ggatagatgg agttactcct
      241 ctctgaaata gaattactgc tctacttttt ctgtttccag aaattattag taacaaaccc
      301 tgatatattc ttttgaaaat ggagcttaaa cgagtctgaa attaacttca gatattagaa
      361 tgccgttggc tttgtttttc aacaattcct acttcattta tctttgtcaa ccattgcatt
      421 tctgtagcag tgaatttcaa cgttttcgtc cggttggtag caggtatttg taattcgtat
      481 atagctgctt ttttattgaa aacagtatat ccatctgtag taacagtaga agataataat
      541 acaggatttg acacttcaag gatgatattt tcttgttttt gtggaaggca agggaatata
      601 gtttgtgtaa gcatattgct tccttatgtt atattttagt aaagaattta ttttttacat
      661 tatagtcggc taaatgaagt ttactgtaaa aaaacgatac ttttttcgta agcgatgaga
      721 tgtggagcca gaaaaatggc tgcgttatgt cattgaactg tccttgaccc acgatattca
      781 gacagtcgtt gtatcttaag ttgacattac ccgctgacgt cgatattccc ttggtgagag
      841 ataacccaac gcactatgcg gatggttttc attgtaatgc tcgatcgcca ctgca
//
LOCUS       DADMHM010000410          866 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.416, whole genome shotgun sequence.
ACCESSION   DADMHM010000410 DADMHM010000000
VERSION     DADMHM010000410.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 866)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 866)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..866
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.416"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..827)
                     /locus_tag="JN125_004329"
     CDS             complement(<1..827)
                     /locus_tag="JN125_004329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HAY8873830.1"
                     /translation="MDALSRLLMLNAPQGTIDKNCVLGSDWQLPHGAGELSVIRWHAL
                     TQGAAKLEMPTGEIFTLRPGNVVLLPQNSAHRLSHVDNESTCIVCGTLRLQHSARYFL
                     TSLPETLFLAPVNHSVEYNWLREAIPFLQQESRSAMPGVDALCSQICATFFTLAVREW
                     IAQVNTEKNILSLLLHPRLGAVIQQMLEMLGHAWTVESLASIAHMSRASFAQLFRDVS
                     GTTPLAVLTKLRLQIAAQMFSRETLPVVVIAESVGYASESSFHKAFVREFGCTPGEYR
                     "
BASE COUNT          233 a          233 c          202 g          198 t
ORIGIN      
        1 cgatattctc ccggagtaca accaaactcg cggacaaacg ccttgtgaaa agatgattcg
       61 ctggcatagc ctactgactc agcgatcacc acaacaggga gcgtttcccg ggaaaacatc
      121 tgggccgcta tttgtagacg caactttgtt aatacagcca gcggcgtggt tccggaaaca
      181 tcacggaaaa gctgggcaaa acttgcccgg gacatgtggg cgatgctggc cagcgattcg
      241 acggtccagg cgtgtcctag catttccagc atttgctgta ttaccgcacc aagacgtgga
      301 tgcagaagca aactgagaat gtttttctct gtattaacct gtgcaatcca ctcacgcacc
      361 gcgagggtaa agaatgtagc gcagatctgg ctacacagtg catccactcc cggcatcgcc
      421 gatctggatt cctgttgtaa aaacgggatc gcctccctca gccagttata ttccacgctg
      481 tggttaaccg gtgctaaaaa cagcgtttcc ggcaaagacg ttaaaaaata acgcgccgaa
      541 tgttgcaacc gaagagtacc acagacaata caggtcgatt cattatcgac atgactcagg
      601 cgatgagctg aattttgtgg tagcaggacc acatttcccg ggcgtaatgt aaaaatctct
      661 cccgtcggca tttccagctt cgccgctcct tgcgttaacg catgccaacg aataaccgat
      721 aattccccgg caccatgtgg aagctgccag tcacttccta acacgcaatt cttatcgatc
      781 gttccttgtg gagcgttaag catcaacaaa cggctaaggg catccatatc agactcctga
      841 gtggtttttg attacaaaca ccaaca
//
LOCUS       DADMHM010000411          860 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.417, whole genome shotgun sequence.
ACCESSION   DADMHM010000411 DADMHM010000000
VERSION     DADMHM010000411.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 860)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 860)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..860
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.417"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..80
                     /locus_tag="JN125_004330"
     CDS             <1..80
                     /locus_tag="JN125_004330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="fimbrial chaperone"
                     /protein_id="HAY8873831.1"
                     /translation="KASSAKVHFYAINDFGGAIEGNASL"
     gene            115..860
                     /locus_tag="JN125_004331"
                     /pseudo
     CDS             115..860
                     /locus_tag="JN125_004331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_414681.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbria/pilus outer membrane usher protein"
BASE COUNT          262 a          174 c          178 g          246 t
ORIGIN      
        1 gcaaagcaag ttctgcaaaa gtacattttt acgccattaa tgattttggt ggcgccattg
       61 aaggtaatgc cagtctgtaa tcaggcaagg atataattcc gcaggaagca taacgtgact
      121 ataaaaccaa ctaaaaatta tcataatcat ctgacccgta tcgctacgtt ttgcgcgctg
      181 ctgtattgca atagtgcttt ctgtgctgaa cttgttgaat atgaccatac cttcctgatg
      241 gggcagaatg cctcaaatat tgatctcagc cggtatagtg aaggtaaccc tgctataccg
      301 ggtatgtacg acgtcagtgt ttatgtcaac gatcaaccta ttattaacca aagcattaca
      361 tttattgaaa ttgaaggaaa aaaaacgcac aagcctgtat cacacttaag aatttattgc
      421 agtttcatat aaattctccc gatataaata acgaaaaagc cgttctgctt gccagggatg
      481 aaacactcgg caattgcctt aatttgacgg aaattatccc tcagacttct gttcgttatg
      541 acgttaacga gcaacgtctg gatatagacg ttcctcaggc atgggtaatg aaaaattacc
      601 aaaactatgt tgatccagcg ttatgggaaa atggcattaa tgcggccatg ttgtcataca
      661 acctcaacgg atatcatagt gaaactcctg gtcgaagaaa tgacagcatt tatgctgctt
      721 ttaacggtgg gatgaattta ggtgcatggc gactgcgtgc ctcaggcaac tacaactgga
      781 tgaccgattc tggcagtaat tatgatttta agaatcggta tatacagcgt gatatcgcct
      841 cgctgcgttc tcaactcatt
//
LOCUS       DADMHM010000412          843 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.418, whole genome shotgun sequence.
ACCESSION   DADMHM010000412 DADMHM010000000
VERSION     DADMHM010000412.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 843)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 843)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.418"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..>843
                     /locus_tag="JN125_004332"
     CDS             <1..>843
                     /locus_tag="JN125_004332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS3 family transposase"
                     /protein_id="HAY8873832.1"
                     /translation="RAHYPVVTLCQVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLEL
                     HGISHGSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAI
                     PNYLERQFAVTEPNQVWCGDVTCIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLT
                     MKALEMAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPME
                     RFFRSLKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKN
                     SNSVA"
BASE COUNT          213 a          210 c          253 g          167 t
ORIGIN      
        1 cagagcgcat tatcctgtgg tcacactctg ccaagtgttc ggggttcatc gcagcagcta
       61 cagatactgg aaaaaccgtc ctgaaaaacc agacggcaga cgggctgtat tacgcagtca
      121 ggtacttgag ctacatggca tcagccatgg ttcggccgga gcaagaagca tcgccacaat
      181 ggcaacccgg agaggctacc agatgggacg ctggcttgct ggcaggctca tgaaagagct
      241 ggggctggtc agctgtcagc agccgactca ccggtataaa cgtggtggtc atgaacatgt
      301 tgctatccct aactaccttg aaaggcagtt cgccgtgacc gagccaaatc aggtgtggtg
      361 cggtgatgtg acctgtatct ggacgggtaa gcgctgggcg tacctcgccg ttgttctcga
      421 cctgttcgca agaaaaccag tgggctgggc catgtcgttc tcgccggaca gcaggctcac
      481 catgaaagcg ctggaaatgg catgggaaac ccgtggtaag cccggcgggg tgatgttcca
      541 cagcgatcag ggcagtcatt atacgagcag gcagttccgg cagttattgt ggcgatacca
      601 gatcagacag agtatgagcc ggcgcggaaa ctgctgggat aacagcccaa tggaacgctt
      661 cttcaggagt ctgaagaacg aatggatgcc ggtggtgggt tacgtaagct tcagcgaggc
      721 agctcacgcc ataacggact atatcgttgg atattacagc gcactaagac cgcacgaata
      781 taacggtggg ttacccccaa acgaatcgga aaatcgatac tggaaaaact ctaactcggt
      841 ggc
//
LOCUS       DADMHM010000413          836 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.419, whole genome shotgun sequence.
ACCESSION   DADMHM010000413 DADMHM010000000
VERSION     DADMHM010000413.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 836)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 836)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..836
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.419"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..>836
                     /locus_tag="JN125_004333"
     CDS             <1..>836
                     /locus_tag="JN125_004333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416329.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HAY8873833.1"
                     /translation="LVGYIAWLATAYRMSFSREINLGLAQHEFELFCQPLLNARSQQC
                     IGVEILLRWNNPRQGRISPDVFIPIAEEHHLIVPLTRYVMAETIRQRHVFPMSSQFHV
                     GINVAPSHFRRGVLIKDLNQYWFSAHPIQQLILEITERDALLDVDYRIARELHRKNVK
                     LAIDDFGTGNSSFSWLETLRPDVLKIDKSFTAAIGSDAVNSTVTDIIIALGQRLNIEL
                     VAEGVETQEQAKYLRRHGVHILQGYLYAQPMPLRDFPKWLAGSQPPPARHNGHITPIM
                     PL"
BASE COUNT          193 a          213 c          216 g          214 t
ORIGIN      
        1 actggtgggc tacatcgcct ggctggcgac cgcttaccgg atgagctttt cccgcgaaat
       61 caatctgggc ctggcgcaac atgagttcga attgttctgt cagcctttgc ttaatgcgcg
      121 cagccagcaa tgtattggtg tagagatttt gctgcgctgg aacaatccgc gtcagggccg
      181 gatttcaccg gatgtgttta ttcctatcgc ggaagaacat catttaattg tgccactgac
      241 ccgctatgtg atggcagaaa ccattcgtca gcgccatgtt ttcccgatga gtagtcagtt
      301 tcatgttggc attaacgtcg cacccagcca ttttcgccgt ggtgtgctga taaaagatct
      361 caatcagtac tggtttagcg ctcacccgat tcagcaactg atcctcgaaa tcaccgaacg
      421 cgatgcctta ctggatgttg attatcggat tgcccgcgag ctacatcgta aaaacgtcaa
      481 actggcgatt gatgacttcg gcaccggcaa cagttcattt tcctggcttg aaacattacg
      541 tcctgacgtg ctgaaaattg ataagtcatt taccgcagct ataggttctg acgcggttaa
      601 ctcgacggtg accgatatca tcatcgcgct ggggcaaaga ctgaatattg aactggtggc
      661 ggagggcgtg gaaacgcaag aacaggcgaa gtatttgcgc cgtcatggcg tgcatatttt
      721 gcaagggtat ttgtacgcac agccgatgcc gctacgtgat tttcccaaat ggctggcggg
      781 cagccaaccg ccgcccgccc ggcataatgg acatatcacg cccattatgc cgttac
//
LOCUS       DADMHM010000414          827 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.420, whole genome shotgun sequence.
ACCESSION   DADMHM010000414 DADMHM010000000
VERSION     DADMHM010000414.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 827)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 827)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.420"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..346
                     /locus_tag="JN125_004334"
     CDS             <1..346
                     /locus_tag="JN125_004334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001613027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873834.1"
                     /translation="VMCLTKPAFSYYIAAYLKLFIENYYEADALVDTILNMLTPPVRN
                     GIPSTTWIAKNLDCFSRNKRVAISFTFQYLCNEYNDPNTEKALNIYWGQYLNESLLIK
                     NVQNSKNKCKSQ"
     gene            complement(407..592)
                     /locus_tag="JN125_004335"
     CDS             complement(407..592)
                     /locus_tag="JN125_004335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873835.1"
                     /translation="MIMVAVAAAVTDALLVFFRQLAPFVVLPALGIFIIHGTVRQAVG
                     FIVMPERDQALMSLTVI"
     gene            591..794
                     /locus_tag="JN125_004336"
     CDS             591..794
                     /locus_tag="JN125_004336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000977355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion protein Rhs"
                     /protein_id="HAY8873836.1"
                     /translation="MMKNQMEPEYTPLRKIHLYHCDHRGLPLALIRSDGRTGWRVEYD
                     EWGNLLSEDNPHRERSSEVHFLY"
BASE COUNT          259 a          169 c          190 g          209 t
ORIGIN      
        1 tgtcatgtgt ctcactaaac cagcattctc atattatatt gcagcctatt taaaactttt
       61 tattgaaaat tattacgaag ctgatgcttt agtggatact attttaaata tgctcactcc
      121 tcctgttagg aatggtatcc ccagcactac atggatagca aaaaatcttg attgctttag
      181 tcgtaataaa agggtggcta tttcttttac attccaatat ttatgtaatg aatataatga
      241 tccaaatact gaaaaggcgt taaatatata ttggggacag tatctgaatg aatcattgct
      301 tattaaaaat gtacagaact ctaaaaataa atgtaaatca cagtaagaca gaaccaagca
      361 gaaatcgtgg gcgtggttcg caccctgacg gagggtgtag cgtgtactag atcacagtga
      421 gcgacatcaa agcttggtca cgttctggca ttacgatgaa gccgaccgcc tgacgcaccg
      481 taccgtgaat gatgaagatg ccgagtgctg gcagtacaac gaacggggct agctgacgga
      541 aaaagacgag cagcgcatcc gtgacggcgg cagccacagc caccattatc atgatgaaaa
      601 accagatgga gccggaatac acgccgctgc gtaaaattca cctgtaccac tgcgaccacc
      661 ggggactgcc gctggcgctg atacgcagtg acggccgaac cggatggcgt gtagagtatg
      721 acgaatgggg caacctgctg agtgaggata acccgcacag ggaaagatca tcagaagttc
      781 actttttgta ctaaataatt cgcattttat gtttaaaaat tgagata
//
LOCUS       DADMHM010000415          814 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.421, whole genome shotgun sequence.
ACCESSION   DADMHM010000415 DADMHM010000000
VERSION     DADMHM010000415.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 814)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 814)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..814
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.421"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..>814
                     /gene="tuf"
                     /locus_tag="JN125_004337"
     CDS             <1..>814
                     /gene="tuf"
                     /locus_tag="JN125_004337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HAY8873837.1"
                     /translation="PMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVR
                     ELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLL
                     PIEDVFSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRA
                     GENVGVLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRP
                     QFYFRTTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGR"
BASE COUNT          190 a          202 c          233 g          189 t
ORIGIN      
        1 gcccgatgcc gcagactcgt gagcacatcc tgctgggtcg tcaggtaggc gttccgtaca
       61 tcatcgtgtt cctgaacaaa tgcgacatgg ttgatgacga agagctgctg gaactggttg
      121 aaatggaagt tcgtgaactt ctgtctcagt acgacttccc gggcgacgac actccgatcg
      181 ttcgtggttc tgctctgaaa gcgctggaag gcgacgcaga gtgggaagcg aaaatcctgg
      241 aactggctgg cttcctggat tcttacattc cggaaccaga gcgtgcgatt gacaagccgt
      301 tcctgctgcc gatcgaagac gtattctcca tctccggtcg tggtaccgtt gttaccggtc
      361 gtgtagaacg cggtatcatc aaagttggtg aagaagttga aatcgttggt atcaaagaga
      421 ctcagaagtc tacctgtact ggcgttgaaa tgttccgcaa actgctggac gaaggccgtg
      481 ctggtgagaa cgtaggtgtt ctgctgcgtg gtatcaaacg tgaagaaatc gaacgtggtc
      541 aggtactggc taagccgggc accatcaagc cgcacaccaa gttcgaatct gaagtgtaca
      601 ttctgtccaa agatgaaggc ggccgtcata ctccgttctt caaaggctac cgtccgcagt
      661 tctacttccg tactactgac gtgactggta ccatcgaact gccggaaggc gtagagatgg
      721 taatgccggg cgacaacatc aaaatggttg ttaccctgat ccacccgatc gcgatggacg
      781 acggtctgcg tttcgcaatc cgtgaaggcg gccg
//
LOCUS       DADMHM010000416          778 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.422, whole genome shotgun sequence.
ACCESSION   DADMHM010000416 DADMHM010000000
VERSION     DADMHM010000416.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 778)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 778)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.422"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(32..736)
                     /locus_tag="JN125_004338"
     CDS             complement(32..736)
                     /locus_tag="JN125_004338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS6-like element IS26 family transposase"
                     /protein_id="HAY8873838.1"
                     /translation="MNPFKGRHFQRDIILWAVRWYCKYGISYRELQEMLAERGVNVDH
                     STIYRWVQRYAPEMEKRLRWYWRNPSDLCPWHMDETYVKVNGRWAYLYRAVDSRGRTV
                     DFYLSSRRNSKAAYRFLGKILNNVKKWQIPRFINTDKAPAYGRALALLKREGRCPSDV
                     EHRQIKYRNNVIECDHGKLKRIINATLGFKSMKTAYATIKGIEVMRALRKGQASAFYY
                     GDPLGEMRLVSRVFEM"
BASE COUNT          178 a          205 c          200 g          195 t
ORIGIN      
        1 atgaggcagc cttttgtctt attcaaaggc cttacatttc aaaaactctg cttaccaggc
       61 gcatttcgcc caggggatca ccataataaa atgctgaggc ctggcctttg cgtagtgcac
      121 gcatcacctc aatacctttg atggtggcgt aagccgtctt catggattta aatcccagcg
      181 tggcgttgat tatccgtttc agtttgccat gatcgcattc aatcacgttg ttccggtact
      241 taatctgtcg gtgttcaacg tcagacgggc accggccttc gcgtttgagc agagcaagcg
      301 cgcgaccata ggcgggcgct ttatccgtgt tgatgaatcg tgggatctgc cacttcttca
      361 cgttgttgag gattttaccc agaaaccggt atgcagcttt gctgttacga cgggaggaga
      421 gataaaaatc gacagtgcgg ccccggctgt cgacggcccg gtacagatac gcccagcggc
      481 cattgacctt cacgtaggtt tcatccatgt gccacgggca aagatcggaa gggttacgcc
      541 agtaccagcg cagccgtttt tccatttcag gcgcataacg ctgaacccag cggtaaatcg
      601 tggagtgatc gacattcact ccgcgttcag ccagcatctc ctgcagctca cggtaactga
      661 tgccgtattt gcagtaccag cgtacggccc acagaatgat gtcacgctga aaatgccggc
      721 ctttgaatgg gttcatgtgc agctccatca gcaaaagggg atgataagtt tatcacca
//
LOCUS       DADMHM010000417          756 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.423, whole genome shotgun sequence.
ACCESSION   DADMHM010000417 DADMHM010000000
VERSION     DADMHM010000417.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 756)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 756)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.423"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            12..509
                     /locus_tag="JN125_004339"
     CDS             12..509
                     /locus_tag="JN125_004339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011076308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbrial protein"
                     /protein_id="HAY8873839.1"
                     /translation="MFALAGNKWNTTLPGGNMQFQGVIIAETCRIEAGDKQMTVNMGQ
                     ISSNRFHAVGEDSAPVPFVIHLRECSTVVSERVGVAFHGVADGKNPDVLSVGEGPGIA
                     TNIGVALFDDEGNLVPINRPPVNWKRLYSGSTSLHFIAKYRATGRWVTGGIANAQAWF
                     SLTYQ"
     gene            546..>756
                     /gene="fimC"
                     /locus_tag="JN125_004340"
     CDS             546..>756
                     /gene="fimC"
                     /locus_tag="JN125_004340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709919.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 fimbria chaperone FimC"
                     /protein_id="HAY8873840.1"
                     /translation="MSNKNANVRKSQEITFCLLAGILMFMAMMVAGRAEAGVALGATR
                     VIYPAGQKQVQLAVTNNDENSTYLIQ"
BASE COUNT          200 a          155 c          211 g          190 t
ORIGIN      
        1 cgttgctgcc aatgtttgct ctggccggaa ataaatggaa taccacgctg cccggcggaa
       61 atatgcaatt tcagggcgtc attattgcgg aaacttgccg gattgaagcc ggtgataaac
      121 aaatgacggt caatatgggg caaatcagca gtaaccggtt tcatgcggta ggggaagata
      181 gcgcaccggt gccttttgtt attcatttac gggaatgtag cacggtggtg agtgaacgtg
      241 tgggtgtggc gtttcacggt gtcgcggatg gtaaaaatcc ggatgtgctt tccgtgggag
      301 aggggccagg gatagccacc aatattggcg tagcgttgtt tgatgatgaa ggaaacctcg
      361 taccgattaa tcgtcctcca gtaaactgga aacggcttta ctcaggctct acttcgctac
      421 atttcatcgc caaatatcgt gctaccgggc gttgggttac tggcggcatc gccaatgccc
      481 aggcctggtt ctctttaacc tatcagtaat tgttcagcag ataatgtgat aacaggaaca
      541 ggacagtgag taataaaaac gccaatgtaa ggaaatcgca ggaaataaca ttctgcttgc
      601 tggcaggtat cctgatgttc atggcaatga tggttgccgg acgcgctgaa gcgggagtgg
      661 ccttaggtgc gactcgcgta atttatccgg cagggcaaaa acaagtgcaa cttgccgtga
      721 caaataatga tgaaaatagt acctatttaa ttcaat
//
LOCUS       DADMHM010000418          737 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.424, whole genome shotgun sequence.
ACCESSION   DADMHM010000418 DADMHM010000000
VERSION     DADMHM010000418.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.424"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            28..>737
                     /locus_tag="JN125_004341"
     CDS             28..>737
                     /locus_tag="JN125_004341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001582091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat protein"
                     /protein_id="HAY8873841.1"
                     /translation="MYHCDHRGLPLALISTEGATAWCAEYDEWGNLLSDENPHHLQQL
                     IRLPGQQYDEESGLYYNRHRYYDPLQGRYITQDPIGLKGGWNFYQYPLNPVINVDPQG
                     LVDINLYPESDLIHSVADEINIPGVFTIGGHGTPTSIESATRSIMTAKDLAYLIKFDG
                     NYKDGMTVWLFSCNTSKGQNSFASQLAKELHTNVIGPDTLWTWWGRGTNGKLKMDTVL
                     TAPTNLNSNKDLMAITTK"
BASE COUNT          219 a          157 c          183 g          178 t
ORIGIN      
        1 gtgtacacgc cggcgcgaaa aatccacctg taccactgcg accatcgcgg cctgccgctg
       61 gcgctcatca gcacggaagg ggcaacagcg tggtgcgcag aatatgatga atggggcaac
      121 ctgctgagtg atgagaaccc gcatcatctg cagcagctca ttcgcctgcc gggtcagcag
      181 tatgatgagg agtccggcct gtattacaac cgccaccgct attatgaccc gctgcagggg
      241 cggtatatca ctcaggatcc gattgggctg aaggggggat ggaattttta tcagtatccg
      301 ttgaatccgg tcataaatgt agatccgcaa ggtttggttg atataaattt ataccccgaa
      361 agtgatctta tccattctgt agctgatgag attaatatcc caggcgtttt cacaatcggg
      421 gggcatggta cccccacatc tattgaatcc gcaacgcgca gtatcatgac agctaaagat
      481 ctagcatatc taattaaatt tgatgggaat tataaagatg ggatgacagt ttggttattt
      541 tcttgtaata caagtaaagg acaaaattca tttgctagcc aattagctaa agagttacat
      601 acaaatgtaa taggacctga cacgctatgg acgtggtggg ggcgaggaac taatggtaag
      661 ttaaaaatgg atacagtgct aacagcacca acgaacctta attcaaataa ggatctaatg
      721 gctataacaa caaaaga
//
LOCUS       DADMHM010000419          719 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.425, whole genome shotgun sequence.
ACCESSION   DADMHM010000419 DADMHM010000000
VERSION     DADMHM010000419.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 719)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.425"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            29..>719
                     /locus_tag="JN125_004342"
     CDS             29..>719
                     /locus_tag="JN125_004342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005137363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="HAY8873842.1"
                     /translation="MKDRNGSGAKGLPHCADGAAATTGDNADGRTAVKSAKPFPVSKR
                     QVWEAYKRVKANRGAAGIDGQTLAGFDENVTDNLYKLWNRMASGSYMPQAVRRVDIPK
                     ADGGVRPLGIPAVSDRIAQMVVKQILEPVLEPLFHADSYGYRPGKSAHQAIAQARKRC
                     WKFDWVVEVDIKGFFDDIDHDLLLKTVQHHTQARWVVMYIERRLKAPVQMPDGAMLAR
                     GRGTPQGGVISP"
BASE COUNT          176 a          169 c          233 g          141 t
ORIGIN      
        1 tacagggacg gagtaaaccg tagtagcggt gaaggaccgt aatgggtccg gagcaaaggg
       61 cttgccccat tgtgctgatg gtgcggcggc aaccacgggc gacaatgccg atgggaggac
      121 tgctgtaaaa tcggcaaagc catttcctgt aagtaaacga caggtatggg aagcttataa
      181 acgagtaaaa gccaaccgtg gggcggcagg cattgacggg cagacactgg ccgggtttga
      241 cgagaatgtt acagacaatc tctacaaact gtggaacaga atggcttccg gcagttatat
      301 gccgcaggcg gtaaggcgtg tggacattcc caaagctgac ggtggtgtac gtccgctcgg
      361 tattccggcc gtgtcggacc ggatcgccca gatggtcgtt aagcagatac tcgagccggt
      421 actggaaccc ctgttccatg cagactcgta tggttatcga ccgggtaaat ccgcacacca
      481 ggcgattgcg caggcgagga aacgctgctg gaagtttgac tgggtggtgg aagtcgatat
      541 taaaggcttc tttgatgata tcgatcatga cctgctactg aagacagtgc agcatcatac
      601 tcaggcacgc tgggtggtga tgtacattga gcgcaggctg aaggcaccgg tgcaaatgcc
      661 ggatggagca atgctggcac ggggtcgagg aacgccgcag ggcggcgtaa tctcccccc
//
LOCUS       DADMHM010000420          719 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.426, whole genome shotgun sequence.
ACCESSION   DADMHM010000420 DADMHM010000000
VERSION     DADMHM010000420.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 719)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.426"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..611)
                     /locus_tag="JN125_004343"
     CDS             complement(<1..611)
                     /locus_tag="JN125_004343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873843.1"
                     /translation="MLPRIRHNNFIGAVELFVKSSHTKTHSNNFFNNIQHAFKKKDWV
                     SNYDSLLTLWEFFRCATQIDKDSYQVLSSKNETVKAMDKFLISFSLKDNGAEYTMTLR
                     GSGFEYEEIPITINEYNSFMDFKNREFPLEQNRRLYAWDILQKKQSDIPKRIKGYIHQ
                     AIGDVSLGYALLEDIVSKLKRGKFELQIPGGGIKECDGWYIYE"
BASE COUNT          217 a          138 c          101 g          263 t
ORIGIN      
        1 ttttcgtaaa tataccatcc atcgcattct ttaattccac ctcctggtat ttggagttca
       61 aatttacccc gttttaattt gcttactata tcctccaata aggcataacc taaagacacg
      121 tcaccaatcg cctggtgaat ataaccttta atccttttcg gtatgtcaga ctgttttttc
      181 tgcagaatat cccaggcata caatcttctg ttttgttcta acggaaattc acggtttttg
      241 aaatccatga atgagttata ctcatttatt gttatgggga tttcttcgta ttcaaatcca
      301 ctgcctcgca atgtcattgt atattcggca ccgttatctt taaggctgaa actgataaga
      361 aacttatcca tggctttaac agtttcattt tttgatgaaa gcacttgata actatcttta
      421 tcaatctgag ttgcgcaacg aaaaaactcc cacaaagtta acaggctatc ataattcgaa
      481 acccaatctt ttttcttaaa tgcatgctga atattattaa aaaaattgtt tgaatgtgtt
      541 tttgtatgcg atgattttac gaataactcc accgcaccaa taaaattatt gtgtctgatc
      601 ctgggtaaca tatggctacc ttattttatt tggttatttt atgtcgccat taaatatctc
      661 attatagaag taaactatca aaaaacgctc attattaaaa tgtaacttat tagcaattg
//
LOCUS       DADMHM010000421          717 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.427, whole genome shotgun sequence.
ACCESSION   DADMHM010000421 DADMHM010000000
VERSION     DADMHM010000421.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 717)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.427"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            95..613
                     /locus_tag="JN125_004344"
                     /pseudo
     CDS             95..613
                     /locus_tag="JN125_004344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
BASE COUNT          175 a          196 c          176 g          170 t
ORIGIN      
        1 cacaatctgc cggttacgcc gaatctgctg aatcagaact ttacgcccac agcacctaat
       61 caggtctggg tcgcagattc agttgtctag gccttccgaa atcaaccgac tgaaggcgct
      121 ggtcgcgaaa ctgcagcgta tgcagttcgg taaaagctca gaaaaacttc gcgcaaaaac
      181 cgaacggcgg atacaggaag cacaggagcg aatcagcgca cttcaggagg aaatggcgga
      241 aacactgggt gagcaatatg acccggtact gccatcttcc ctgcgccagt cttcagcccg
      301 taaaccgtta ccagcctcac ttccccgtgc cccccgggtc atccggccgg aagaggaatg
      361 ctgtccggcc tgtggtggtg aactcagtcc actgggatgt gatgtgtcag agcagctgga
      421 gcttatcagc agcgccttta aggttatcga aaaacaacgc cctaaactgg cctgtcgccg
      481 gtgcgaccat atcgtgcagg caccggtgcc ttcaaaaccc attgcacgca gttatgccgg
      541 agcggggctt ctggcccatg ttgttaccgg aaagtatgca gacgatctgc cattataccg
      601 ccaaagtgat ctactattcc acacagctat ttagctctct ttttgttgag ctcccatgat
      661 tctttcattt attgttacta attattttat gttatcatga tgttagaaca cgctctg
//
LOCUS       DADMHM010000422          713 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.428, whole genome shotgun sequence.
ACCESSION   DADMHM010000422 DADMHM010000000
VERSION     DADMHM010000422.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 713)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.428"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..>713
                     /locus_tag="JN125_004345"
     CDS             <1..>713
                     /locus_tag="JN125_004345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001297906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS110-like element ISEc20 family transposase"
                     /protein_id="HAY8873844.1"
                     /translation="HHAVAINRSGKRLFDKALPNDENKLRSLISDLKQHGQILLVVDQ
                     PATIGALPVAVARSEGVLVGYLPGLAMRRIADLHAGEAKTDARDAAIIAEAARTLPHA
                     LRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIRGLLTQIHPALERVLGPRLEHPA
                     VLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKRLAADIAQALAEQTVVVPGTNAA
                     AVVLPRLALQLITLRKQRD"
BASE COUNT          163 a          230 c          176 g          144 t
ORIGIN      
        1 gcatcacgct gttgccatta atcgttcagg taaacgcctg ttcgataaag cattacccaa
       61 cgacgaaaac aaactcaggt cgctaatatc tgacctgaaa caacatggtc agatactgct
      121 ggttgttgat cagccagcta ccatcggtgc gttacctgtc gccgttgccc gctcagaagg
      181 agtccttgtc ggatacctcc ctggactggc catgcgccgc atagccgact tacacgccgg
      241 tgaagctaaa actgatgctc gtgacgctgc catcattgcc gaagctgccc gtaccctgcc
      301 tcacgcgcta cgcacgctga aactggctga cgagcaaatc gccgaactct ccatgctctg
      361 cggcttcgat gatgatcttg ccgcacagac aacgcaggcc agcaaccgta tccgcggcct
      421 tctgacccag atacatccgg cactggagcg cgttctcggt ccgagacttg agcacccggc
      481 ggtactcgat cttctccagc gatatccctc accagaaaaa ctcgcttcgc tgggtgagaa
      541 gaagctggca gcccagctct gcaaacttgc gcctcgtctg ggtaaacgcc ttgcagcaga
      601 catagctcag gcactggccg aacaaaccgt cgtcgttccc ggcacgaatg ccgctgccgt
      661 agtactgcca cgtctggcac tccagctcat cacgctgcgt aagcaaagag acg
//
LOCUS       DADMHM010000423          700 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.429, whole genome shotgun sequence.
ACCESSION   DADMHM010000423 DADMHM010000000
VERSION     DADMHM010000423.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 700)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.429"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..>700
                     /locus_tag="JN125_004346"
     CDS             <1..>700
                     /locus_tag="JN125_004346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000633896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alpha-glycosidase"
                     /protein_id="HAY8873845.1"
                     /translation="DYLEDLGINGIYFCPIFTSASNHKYDTIDHFSVDPHLGGNIAFH
                     TLIEEAHKRGIKIMLDAVFNHLGADSPIWLDVVRNGANSRYADWFWIHKLPVYPDTPK
                     SEWDFKNFNYETFGNVIEMPKLNTENEECREYLLSIVRYWTQNFDIDGWRLDVANEVD
                     HHFWRDFRKVIKDIKPECYILSEIWHEGTPWLRGDQFDSLMNYPLTYGIIDYFALQDT
                     TKQEFMTSVTRSYLC"
BASE COUNT          204 a          113 c          146 g          237 t
ORIGIN      
        1 cgattatctg gaagatctgg gtattaatgg gatttatttt tgtcctattt ttacctcagc
       61 atccaaccat aaatatgaca ccatcgatca ttttagtgtt gatccacatt taggtgggaa
      121 tattgctttc catactttga ttgaagaagc gcataagcgt ggaataaaaa tcatgttgga
      181 tgcagtattc aatcatttag gcgctgactc tccaatatgg cttgacgttg tacgcaatgg
      241 tgccaattca cgttacgccg attggttctg gattcataaa ttgcctgttt atcccgatac
      301 tccaaaaagt gaatgggatt ttaaaaactt taactatgaa acctttggca atgttattga
      361 aatgcctaag ctaaatactg agaatgaaga gtgccgtgaa tacttactta gtatagttcg
      421 ctattggacg caaaattttg atattgatgg ttggcgtctg gatgttgcga atgaagtgga
      481 tcatcatttc tggcgagatt tcagaaaggt gattaaagat atcaaacctg aatgttatat
      541 tttgagtgag atatggcatg agggcacccc ctggttgcgt ggtgatcagt ttgattcatt
      601 aatgaattat cccttaacat atgggattat tgattatttt gcgttacagg atacaacaaa
      661 acaagaattt atgacatccg ttacacgttc ttatctttgt
//
LOCUS       DADMHM010000424          670 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.430, whole genome shotgun sequence.
ACCESSION   DADMHM010000424 DADMHM010000000
VERSION     DADMHM010000424.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 670)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 670)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.430"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            1..670
                     /locus_tag="JN125_004347"
                     /pseudo
     CDS             1..670
                     /locus_tag="JN125_004347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612230.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="IS1 family transposase"
BASE COUNT          154 a          175 c          186 g          155 t
ORIGIN      
        1 cttccatttc catcagatgt ccttcctgct ccgctactga aggcgtggtg cgtaacggca
       61 aaagcactgc cggacatcag cgctatctct gctctcattg ccgtaaaaca tggcaactac
      121 agttcactta caccgcctct cagcccggta cgcaccagaa aatcattgat atggccatga
      181 atggcgtcgg atgtcgcgcc agtgcacgca ttatgggcgt tggcctcaac acggttttac
      241 gtcacttaaa aaactcaggc cgcagtcggt aacctcgcgc atacaaccgg gcagtgatgt
      301 gattgtctgc gctgaaatgg acgaacagtg gggctacgtc ggtgctaaat cacgtcagcg
      361 ctggctgttt tacgcgtatg acaggatacg gaggacggtt gtggcgcacg tcttcggtga
      421 acgcactctg gccacactgg agcgtcttct gagcctgctg tcggcctttg aggtcgtggt
      481 atggatgacg gatggctggc cgctgtatga atcacgcctg aagggaaagc tgcacgttat
      541 cagcaagcgt tacactcagc gcattgagcg acataatctg aatctgagac aacatctggc
      601 aaggctggga cggaagtcac tgtcgttctc aaaatcggtg gagctgcatg acaaggtcat
      661 cgggcattat
//
LOCUS       DADMHM010000425          660 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.431, whole genome shotgun sequence.
ACCESSION   DADMHM010000425 DADMHM010000000
VERSION     DADMHM010000425.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 660)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.431"
                     /strain="H113540504"
                     /db_xref="taxon:621"
BASE COUNT          186 a          130 c          133 g          211 t
ORIGIN      
        1 cttactcagt cgaccttcaa aataaacgtt taatagggac aatcaccatt tggattgtcc
       61 gctgaggagg cgaacgtttt cctagacagc tttatcatgt cagcccacat tgttggcgct
      121 gacaatacta aggacaaacg atggggaagt agctttttag cgttattttc gggagtaaaa
      181 aacatggtat ctttccgtat gtcagttgta tcttgctggt attcgtagtc gtgataaggc
      241 atacaacgat atttatcttc acgttagtga agaataagtt gttttgtgat ctatgttaat
      301 ctgggattac aatccgggct tgatacatcg catcacgact tttattctct tcagaataga
      361 atatgttact ccccgtttta caggctcagg atttgaatta caaattatac ttttaagtga
      421 acaataacca ggggtatttc ttatttcctg aaaccaggct tggcccattt cgggatgagt
      481 ttgaaaaaac tcttgacgca tacgatagtg atgaaataaa cgaaacaaat tacgtcaaca
      541 aactcaggcg tcttgcctga catgctcctg acatcattga tattcacgct catctggcat
      601 atgcatttgc gctctttatg ctgcaattct ggcgaatgtt catttacagc gtcatcagga
//
LOCUS       DADMHM010000426          653 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.432, whole genome shotgun sequence.
ACCESSION   DADMHM010000426 DADMHM010000000
VERSION     DADMHM010000426.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 653)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.432"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..470)
                     /locus_tag="JN125_004348"
     CDS             complement(<1..470)
                     /locus_tag="JN125_004348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HAY8873846.1"
                     /translation="MEKENITIDPRSSFTPSSSADIPVPPDGLVQRSTRIKRIQTTAM
                     LLLFFAAVINYLDRSSLSVANLTIREELGLSATEIGALLSVFSLAYGIAQLPCGPLLD
                     RKGPRLMLGLGMFFWSLFQAMSGMVHNFTQFVLVRIGMGIGEAPMNPCGVKVIN"
BASE COUNT          184 a          147 c          150 g          172 t
ORIGIN      
        1 tcgttaatga cttttacacc gcatgggttc atcggcgctt caccaatccc cataccgata
       61 cgcaccaaca cgaactgcgt aaagttgtgc accatgccag acattgcctg gaacagtgac
      121 cagaagaaca tccccagtcc cagcatcagg cgtgggcctt tacgatccaa tagtgggccg
      181 caaggaagtt gcgcaatccc gtaagcgagt gaaaacacgg agagcaaagc gccgatttcg
      241 gtggcactta atcccaattc ttcacgaatc gttaaatttg ctaccgacag cgaactgcgg
      301 tcgagataat tgattaccgc cgcaaaaaat aataacaaca tggcggtggt ttgaatgcgt
      361 ttaattcggg tactgcgttg aactaatcca tctggtggca cgggaatatc tgccgacgaa
      421 gatggagtaa atgaagaacg cggatcgatg gtgatatttt ctttttccac gccggactcc
      481 tgtatttata attttaattg tttacgtaat tgtgcattac gcaaggttga cattaacggc
      541 aggttaaagt tttaggactt tactaccgct cacaaaaaca tttttagtcg actgattgtg
      601 agcataggta agcgggaatt ttccggtatt tatcttttga taaaaccgtg cac
//
LOCUS       DADMHM010000427          644 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.433, whole genome shotgun sequence.
ACCESSION   DADMHM010000427 DADMHM010000000
VERSION     DADMHM010000427.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 644)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.433"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(189..>644)
                     /locus_tag="JN125_004349"
     CDS             complement(189..>644)
                     /locus_tag="JN125_004349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000015366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat protein"
                     /protein_id="HAY8873847.1"
                     /translation="PLGLIDKPAPVFNRDLNSDPYYLAVNNCYSYALNRYGNPGSRIF
                     GGGGLQPGELSGKEFSKLTCGSIFEASKNDGAKDLDNGSCPSGYHKAQLFIRPHNFIG
                     MGGDYHWYRQDANGEWSDKQGVGAIRFRGKDPFPPIDYPEKCGTIFLPN"
BASE COUNT          198 a          139 c          103 g          204 t
ORIGIN      
        1 tctatttatt cctgaacctt taacaccata ataaatcaga atttctgggt attgttcatc
       61 cttcacgttt tcatattttt ggtatttaat tgaaaaccaa gagtctatac tgccaacatc
      121 ttcaaaaaat attggagctg atgtttccgc atgaacatat gcagaaaatg ctaacaaaat
      181 ggcaatactt agtttggtaa aaatatcgtt ccacactttt caggataatc tattgggggg
      241 aagggatctt ttcctctaaa tctaattgct cccactcctt gtttgtcaga ccattcgcca
      301 tttgcatcct gacgatacca gtgataatcc cctcccatgc ctataaaatt gtgaggacga
      361 ataaacaatt gagctttatg gtaaccagat ggacaactcc cattatctaa atccttggca
      421 ccatcatttt ttgacgcttc aaaaatacta ccgcaagtga gtttagaaaa ctcttttcca
      481 gataattctc caggttgtaa tcctccgccg ccaaaaatcc tactcccagg gtttccatac
      541 ctatttagag catatgaata acaattattt acggcaagat aatacggatc tgaatttagg
      601 tctcgattga atactggagc aggtttatca attaagccca gcgg
//
LOCUS       DADMHM010000428          617 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.434, whole genome shotgun sequence.
ACCESSION   DADMHM010000428 DADMHM010000000
VERSION     DADMHM010000428.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 617)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.434"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            100..617
                     /locus_tag="JN125_004350"
                     /pseudo
     CDS             100..617
                     /locus_tag="JN125_004350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001356833.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system tube protein Hcp"
BASE COUNT          198 a          121 c          145 g          153 t
ORIGIN      
        1 cacctgttta ctgagaacaa tctggataca gaagccatca ctgtcagtta tgaatatata
       61 ctctccaggc atctgattgc taatactgaa tttagttatt tggcatttcc cgataactac
      121 aaccgtctgt ttataccacg gccaaaaact aaagctggta atggttcaaa acacttaata
      181 gtaaagcggt tggcagactg cttgctgctg gcggcatata caatgggaat atcgaaggat
      241 tcagggaaac agcagacaag ttggggggag atgcacctgc tggttacgat caatttatgg
      301 ataacaaagg gttactcatc gctggtgctt caatagttgc tggagcagtt ctggggagaa
      361 tgagactccc tgatttggaa tcacttgagc atttcggagc cagaggagca gtatcaggaa
      421 gaccatttaa tcccgacctt gccggtggtc caatagaaaa tctgacgaca gatggcgtaa
      481 caatcaacag ggaaggtatc gctattgttg aaaaacacat agccagattt ggtcatgacc
      541 ctgtaaatga agtgatgatc aatagactga aagacattga gaaaggaaaa atccccccag
      601 aacaagtaga tcttaac
//
LOCUS       DADMHM010000429          605 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.435, whole genome shotgun sequence.
ACCESSION   DADMHM010000429 DADMHM010000000
VERSION     DADMHM010000429.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 605)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 605)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.435"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            299..605
                     /gene="hcp"
                     /locus_tag="JN125_004351"
                     /pseudo
     CDS             299..605
                     /gene="hcp"
                     /locus_tag="JN125_004351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016243957.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system tube protein Hcp"
BASE COUNT          203 a          115 c          100 g          187 t
ORIGIN      
        1 attacgactc cgctatttga ccttaagaaa gtcggcaagt catagtcata aatgagtctc
       61 ttcaatggaa gacaccttag agatttacca tctactccca ttcacaaaca aacattaatt
      121 attatcaaca cattcacatt aattataaat catctcagac cttcctgata aaaagatatt
      181 aaagtgaaac attttgtttt tcacatttta gttcatcact tttaggcgta aataaaggta
      241 aaaaaaacaa caatactatt tctctttcac aaaagaatta acaaaaggtt ttttaaggat
      301 gagtgatatt atttacttga ccataaccgg agaacaacaa ggatgtattt cctctctttg
      361 tggaacgagc gcatcaatag gtaatcgctg gcagattggc catgaagatg aaatcttcgc
      421 gttctcgctc tctaatagta ttacgaatgc aggcaaaggg tcacaattgc atggccttag
      481 tttctgtaaa ttcttattaa cgctattaac aataacgagc agttgttcat ggcgtttgac
      541 ttctatcgga tcaatagatt tggtcgatgg gagaaatatt acaacattca actccgcggc
      601 gcgct
//
LOCUS       DADMHM010000430          583 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.436, whole genome shotgun sequence.
ACCESSION   DADMHM010000430 DADMHM010000000
VERSION     DADMHM010000430.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 583)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 583)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.436"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..>583)
                     /locus_tag="JN125_004352"
     CDS             complement(<1..>583)
                     /locus_tag="JN125_004352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_311300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HAY8873848.1"
                     /translation="FHLSFLQTAVMLGSQTFVVLCACAILRWQLGTRWRYGLTSRYVW
                     QRLFWLGLVTPIGIKCSMYLVGSFFDFPLKISTFFGDADAIFTVVDLLSLFTAVLIYN
                     MLFYYLTRMIVSPHFAQILWRRDIAPSLGKEKRAFTLSWLAALSVLLLLLCTPYENDF
                     IAGYLVPVFFIIFTLGVGKLRYPFLNLTWAVSTL"
BASE COUNT          193 a          142 c          144 g          104 t
ORIGIN      
        1 aagcgttgaa acagcccagg tgagatttaa aaacggatag cgaagcttac cgaccccgag
       61 ggtaaagatg atgaagaaaa cgggtaccag gtaaccggca ataaagtcgt tttcataagg
      121 tgtgcacaac agaagtagaa gcacgcttaa cgctgccagc cagcttaagg taaatgcgcg
      181 tttctctttg cccaacgacg gcgcgatatc cctgcgccac aatatctgcg caaagtgggg
      241 acttacaatc atgcgagtga gatagtagaa aagcatattg taaatcagca cagcggtgaa
      301 aaggcttagc aaatcaacga ccgtgaaaat ggcatccgca tcgccgaaaa aggtggatat
      361 ctttagcggg aaatcaaaga agctccccac aagatacatg ctgcatttga tgccgatcgg
      421 cgtcaccaaa ccaagccaga acagacgttg ccagacatat cggctggtca atccataacg
      481 ccaacgcgtc cccagctgcc agcgtaatat tgcgcaggca cacaacacga caaacgtctg
      541 gctaccgagc atgaccgcag tctgtaaaaa agagagatga aag
//
LOCUS       DADMHM010000431          580 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.437, whole genome shotgun sequence.
ACCESSION   DADMHM010000431 DADMHM010000000
VERSION     DADMHM010000431.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 580)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.437"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            97..>580
                     /locus_tag="JN125_004353"
     CDS             97..>580
                     /locus_tag="JN125_004353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008439272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873849.1"
                     /translation="MFSIKPGPRNLPIDNPTLLSWNITDGDLNSKLNTLEYLNCITNI
                     INSCGVYPQGLKDREIISTFHAEKVINDLLKNDYKISLSPDTTYRELNKAAQRSITAP
                     DRIGEGKTLVYQRDTMVERGDNSGIYQYGPAEHFTHIISDKPSPKDKYVAYAINIPDY
                     E"
BASE COUNT          214 a          108 c           86 g          172 t
ORIGIN      
        1 aaagtaggac atctgtttgc aattactttc acaacaatta aacattttta tgtttccgta
       61 tacatcatat tactctacca ttagagaaac tttattatgt tttctataaa accaggaccc
      121 agaaatttac ctatcgacaa ccccacattg ttatcatgga acattactga cggggatcta
      181 aattccaaat taaatacatt agaatatcta aactgtataa caaatattat taattcttgt
      241 ggagtttacc ctcaaggatt aaaagacaga gaaattatat caacttttca cgcagaaaaa
      301 gttattaatg atctgttaaa aaacgattat aaaatttccc tttctccaga tacaacttac
      361 cgagagttga ataaagcagc acagcgtagc attacagcgc cagacaggat aggagaagga
      421 aaaacattgg tttatcaacg agatacaatg gttgaaagag gtgataacag cggtatttat
      481 cagtatggtc ctgctgaaca cttcacccac attatatctg acaaaccttc cccaaaagat
      541 aaatatgttg catatgctat taacattcct gactatgagc
//
LOCUS       DADMHM010000432          570 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.438, whole genome shotgun sequence.
ACCESSION   DADMHM010000432 DADMHM010000000
VERSION     DADMHM010000432.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 570)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 570)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.438"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..>570
                     /locus_tag="JN125_004354"
     CDS             <1..>570
                     /locus_tag="JN125_004354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RHS repeat protein"
                     /protein_id="HAY8873850.1"
                     /translation="YDRHGRLTEKTDLIPEGGIRTDDERTHRYHYDSQHRLVHYTRTQ
                     YAEPLVESRYLYDPLGRRVAKRVWRRERDLTGWMSLSRKPEVTWYGWDGDRLTTIQND
                     RSRIQTIYQPGSFTPLIRVETATGELAKTQRRSLADTLQQSGGEDGGSVVFPPVLVQM
                     LDRLESEILADRVSEESRRWLASCGLTVA"
BASE COUNT          125 a          164 c          194 g           87 t
ORIGIN      
        1 gtatgaccgt cacggcaggc tgacagagaa aaccgacctc atcccggaag ggggtatccg
       61 cacggatgat gagcgcaccc accggtacca ttacgacagt cagcaccggc tggtgcacta
      121 cacgcggaca caatatgcag agccgctggt cgaaagtcgc tatctttacg acccgctggg
      181 ccgcagggtg gcaaaacggg tgtggcggcg tgaacgtgac ctgacgggct ggatgtcgct
      241 gtcacggaaa ccggaagtga cctggtacgg ctgggacggc gaccggctga ccacaataca
      301 gaacgacagg agccgcatcc agacgattta tcagccgggg agcttcacgc cactcatcag
      361 agttgaaacc gccaccggtg agctggcgaa aacgcagcgc cgcagcctgg cggataccct
      421 tcagcagtcc ggcggcgaag acggtggcag tgtggtgttc ccgccggtgc tggtgcagat
      481 gctcgaccgg ctggaaagtg aaatcctggc tgaccgggtg agtgaggaaa gccgccgctg
      541 gctggcatcg tgcggcctga cggtggcgca
//
LOCUS       DADMHM010000433          569 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.439, whole genome shotgun sequence.
ACCESSION   DADMHM010000433 DADMHM010000000
VERSION     DADMHM010000433.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 569)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.439"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            22..519
                     /locus_tag="JN125_004355"
     CDS             22..519
                     /locus_tag="JN125_004355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000109921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porin"
                     /protein_id="HAY8873851.1"
                     /translation="MSIDYNIEGFGFVGAYSKSDRTNEQVGDGYGDNAEVWSLAAKYD
                     ANNIYAAMMYGETRNMTVLANDHFANKTQNFEAVVQYQFDFGLRPSLGYVYSKGKDLY
                     ARDGHKGVDADRVNYIEVGTWYYFNKNMNVYTAYKFNLLDKDDAAITDAATDDQFAVG
                     IVYQF"
BASE COUNT          168 a          115 c          129 g          157 t
ORIGIN      
        1 gattcagggg gccagtctac gttgtctata gactacaaca tcgaaggttt tggttttgta
       61 ggtgcatata gcaaatctga tcgtactaat gaacaagttg gtgacggcta cggtgataac
      121 gctgaagtgt ggtcattagc agccaagtat gatgcaaata atatctatgc agcaatgatg
      181 tacggtgaaa cccgcaacat gaccgttttg gctaatgatc attttgcaaa taaaacccaa
      241 aactttgaag ctgttgtaca gtatcagttc gacttcggtt tacgtccgtc tttaggctac
      301 gtatattcca aaggcaaaga tctttatgct cgtgatggac ataaaggtgt tgatgctgac
      361 cgcgtaaatt atatcgaagt tggtacctgg tactacttca ataagaacat gaacgtctac
      421 acagcataca aatttaacct gctggataaa gacgatgcag cgattaccga tgccgcaact
      481 gatgaccagt ttgcagttgg tatcgtctac cagttctaat cagccaacgc gccgcggcgt
      541 gttactgtaa aacataacac tagcctgag
//
LOCUS       DADMHM010000434          563 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.440, whole genome shotgun sequence.
ACCESSION   DADMHM010000434 DADMHM010000000
VERSION     DADMHM010000434.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 563)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.440"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..407)
                     /locus_tag="JN125_004356"
     CDS             complement(<1..407)
                     /locus_tag="JN125_004356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006687448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873852.1"
                     /translation="MMNDLDYPFEAPLKESFIESIIQIEFNSNSTNCLEKLCNEVSIL
                     FKNQPDYLTFLRAMDGFEVNGLRLFSLSIPEPSVKNLFAVNEFYRNNDDFINPDLQER
                     LVIGDDSISIFTYDIKSNFFEIRDNIGTENIFSS"
BASE COUNT          177 a           91 c           88 g          207 t
ORIGIN      
        1 gaactgaata tattttctgt gccaatatta tctctaattt caaaaaagtt acttttaatg
       61 tcataagtaa atattgaaat gctatcatcc ccgatcacta accgttcttg tagatcaggg
      121 tttatgaaat catcattatt tctataaaat tcatttacgg caaaaaggtt tttaactgaa
      181 ggttctggaa tcgagaggct aaataatcgt aatccattaa cttcgaatcc atccattgct
      241 cttaaaaaag taagataatc aggttgattc ttaaaaagaa tactaacttc attacataac
      301 ttctccaggc aattagttga attagaatta aattctattt ggattatact ttcaataaat
      361 gattccttga gcggtgcttc aaatggatag tctaaatcat tcatcatttt tattaattaa
      421 tttatttggg ttttagtcat cattttgtgt ggtccataat atttttatat gaacgcatcc
      481 cgtttgcaag gcatccattg ttttgacatg acgggtaggt tgcagcttta tatccggctt
      541 tattgcagcc gtaacgctgc gag
//
LOCUS       DADMHM010000435          541 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.441, whole genome shotgun sequence.
ACCESSION   DADMHM010000435 DADMHM010000000
VERSION     DADMHM010000435.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 541)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 541)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..541
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.441"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..338
                     /gene="dsbG"
                     /locus_tag="JN125_004357"
     CDS             <1..338
                     /gene="dsbG"
                     /locus_tag="JN125_004357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415137.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbG"
                     /protein_id="HAY8873853.1"
                     /translation="PWVDSGKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYKA
                     SGGKLKLNVPANVSTEQMKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPDQK
                     TLNIIMGNK"
BASE COUNT          193 a          101 c          120 g          127 t
ORIGIN      
        1 gcccgtgggt agattctggc aaagtgcaat taagaacatt gttggttggg gttatcaagc
       61 cagaaagccc ggcgacagca gcggcaattc ttgcctccaa agatcccgca aaaacctggc
      121 aacaatataa agcctctggt ggcaagctta agctaaacgt gcctgcaaac gtaagtacag
      181 agcaaatgaa agtgttaagt gacaatgaga aactgatgga cgatctgggg gcaaatgtca
      241 cgccggctat ctattacatg agtaaggaaa atacgctaca acaggccgtg gggttgcccg
      301 atcagaaaac gcttaatatc attatgggga ataaataaaa ggtaattcat ggatggttga
      361 actatatctc tgcttttcaa ccatcctaaa aagcatgaat tgctcgctct gccctaagtg
      421 gctgtgctat tttagaaaaa cttaatcctg agttaagcaa aaaaacataa tcaataaaaa
      481 tatatacgca gaaaaacatt gattaagtga atatatcatg gaagaaaaat ataaccggag
      541 t
//
LOCUS       DADMHM010000436          528 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.442, whole genome shotgun sequence.
ACCESSION   DADMHM010000436 DADMHM010000000
VERSION     DADMHM010000436.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 528)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.442"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..>528
                     /locus_tag="JN125_004358"
     CDS             <1..>528
                     /locus_tag="JN125_004358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416300.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HAY8873854.1"
                     /translation="VSLSIDILYFITSSWKSVLFWILTALILLNMVRMHFRLYQNVSR
                     ENISDAMTGLYNHKILTPELEQRLQKLVQSGSSVMFIAIDMDKLKQINDTLGHQEGDL
                     AITLLAQAIKQSIRKSDYAIRLGGDEFCIILVDSTPQIAAQLPERIEKRLQHIAPQKE
                     IGFSSGIYAMKENDT"
BASE COUNT          147 a          108 c          120 g          153 t
ORIGIN      
        1 gtgtctcgtt atccattgat attctttact ttatcacgtc ttcgtggaaa agcgttctgt
       61 tctggatttt gacggcgtta attttgctga atatggtccg gatgcacttc cgtttatacc
      121 aaaatgtgtc gcgagaaaat attagtgatg cgatgactgg actgtataat cacaaaattt
      181 taacccctga actggagcag cggttgcaga aactggtgca atccggttct tcggtgatgt
      241 ttattgcaat tgacatggac aagttaaagc aaataaatga caccctcggt catcaggagg
      301 gggatttagc gattacgtta ttagctcagg cgattaaaca atcgattcgt aaaagtgatt
      361 atgccatccg actcggtggc gatgaattct gcatcattct tgtcgattcg acgccgcaaa
      421 ttgcagcaca actgcctgaa cgtatcgaaa aacgtctgca acatatcgcg ccgcagaaag
      481 aaatcggctt ctcttccggt atttacgcga tgaaagaaaa cgatacgt
//
LOCUS       DADMHM010000437          518 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.443, whole genome shotgun sequence.
ACCESSION   DADMHM010000437 DADMHM010000000
VERSION     DADMHM010000437.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 518)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 518)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..518
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.443"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(162..>518)
                     /locus_tag="JN125_004359"
     CDS             complement(162..>518)
                     /locus_tag="JN125_004359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_417590.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873855.1"
                     /translation="AITALNFYQGDVPSVMIRIQPENMSPFIIDISTGEHDNYIIQTL
                     DVGTFAPFGEQCTCSAVNKKELECIKETISKYCAKFTQKEAILTAPTHFNKTCITSDC
                     WQILFFSPDHFNNDFY"
BASE COUNT          160 a           82 c           99 g          177 t
ORIGIN      
        1 accgaggtct gttttagttt ttctatacct ggtgctagtg cttcgagatt attttctatg
       61 gggatttcag gaaggtcatt catttttcga cggactaaat cactactaat atcattacca
      121 attgatgaaa cagggaacat tattttatcc tttataaata atcaataaaa atcattatta
      181 aaatgatcgg gtgaaaaaaa gagaatttgc caacaatctg aagtaatgca ggttttatta
      241 aagtgcgtag gggctgttaa gatggcttct ttttgggtga actttgcgca atacttagaa
      301 atcgtctcct taatacattc cagctctttt ttattgacgg ctgagcaagt acattgttca
      361 ccaaaaggtg caaaagtgcc tacatctaat gtttgtatga tataattatc atgttctcct
      421 gtagaaatat ctatgatgaa tggactcata ttttccggtt ggattcggat catgacagaa
      481 ggaacatcgc cttgatagaa attcaatgca gtaattgc
//
LOCUS       DADMHM010000438          518 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.444, whole genome shotgun sequence.
ACCESSION   DADMHM010000438 DADMHM010000000
VERSION     DADMHM010000438.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 518)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 518)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..518
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.444"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..278
                     /locus_tag="JN125_004360"
     CDS             <1..278
                     /locus_tag="JN125_004360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309648.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="holin"
                     /protein_id="HAY8873856.1"
                     /translation="FWLVLLIIAGWGGLVRYLIDVKQSKATWSWINALAQIVVSGFTG
                     VIGGLISIESGFSIYMILATAGISGAMGSVALTYFWERLTGVKNAKS"
     gene            265..>518
                     /locus_tag="JN125_004361"
     CDS             265..>518
                     /locus_tag="JN125_004361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_309649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family protein"
                     /protein_id="HAY8873857.1"
                     /translation="MQNLNPQRKAFLDMVAWSEGTDNGRQPTRNHGYDIIVGGELFTD
                     YSDHPRKLVTLNPKLKSTAAGRYQLLSRWWDAYRKQLGLK"
BASE COUNT          129 a          114 c          142 g          133 t
ORIGIN      
        1 cgttctggct cgttttgctg atcatcgcag gttggggcgg tctggtccgc tacctgatag
       61 atgtgaagca gagtaaagca acgtggagtt ggataaatgc tctggctcag atagtggtat
      121 caggattcac cggtgttatt ggtggcctga tcagcatcga aagtggattc agtatttaca
      181 tgattctcgc gacagcgggg attagtggtg cgatgggttc ggttgcactg acgtacttct
      241 gggaacgact gacaggggtg aaaaatgcaa aatcttaatc ctcagcgtaa agctttcctc
      301 gatatggtgg catggtcaga aggaacggat aacgggcgac aaccgacacg taaccacggt
      361 tatgatatta ttgtcggtgg tgaactcttc actgattact ccgatcaccc tcgcaaactt
      421 gtcacgctaa accccaaact caaatcaaca gctgcaggcc gttatcaact tctttcacgc
      481 tggtgggatg cttaccgcaa gcagcttggg ctgaaaga
//
LOCUS       DADMHM010000439          510 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.445, whole genome shotgun sequence.
ACCESSION   DADMHM010000439 DADMHM010000000
VERSION     DADMHM010000439.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 510)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 510)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.445"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            325..>510
                     /locus_tag="JN125_004362"
     CDS             325..>510
                     /locus_tag="JN125_004362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000142995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1737 domain-containing protein"
                     /protein_id="HAY8873858.1"
                     /translation="MAFKHYDVVRAASPSDLAEKLTHKLKEGWQPFGSPVAITPYTLM
                     QAIAAEGAVISATSDPEY"
BASE COUNT          121 a          139 c          134 g          116 t
ORIGIN      
        1 gattcaggtg ctggtactga attcaccggg aggcacccgg caccatgcaa tggcacatag
       61 cgccactctc cagcccctct ccggaggggc tttcttgtgg gcaaaaaaag cccgcgctgg
      121 gagacgcggg cggcaaggaa taaacaacaa aacgtgaagt aatatttcag ctggcgaata
      181 ataccccata gtaatcactc tgcgcaactg cgcggtcttt ttcgaattgc gggctgtcgt
      241 ctctcttctg ccattgtcct gtaacttccg gacttcagcc cgctcctcat tttactcaca
      301 atattatccc ggccgggagg attcatggct tttaaacact atgatgttgt cagggcggcg
      361 tcgccgtcag atcttgcgga aaagctgaca cataaactga aagagggctg gcagccgttt
      421 ggtagtccgg tggccataac cccttatact ctgatgcagg cgattgcagc agaaggtgca
      481 gtaatcagcg ccaccagcga cccggagtat
//
LOCUS       DADMHM010000440          505 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.446, whole genome shotgun sequence.
ACCESSION   DADMHM010000440 DADMHM010000000
VERSION     DADMHM010000440.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 505)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.446"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..>505)
                     /gene="dgcZ"
                     /locus_tag="JN125_004363"
     CDS             complement(<1..>505)
                     /gene="dgcZ"
                     /locus_tag="JN125_004363"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="diguanylate cyclase DgcZ"
                     /protein_id="HAY8873859.1"
                     /translation="SYGLCQFGRWIDHLGPLDNDELPYVRLMDSAHQHMHNCGRELML
                     AIVENHWQDAHFDAFQEGLLSFTAALTDYKIYLLTIRSNMDVLTGLPGRRVLNESFDH
                     QLRNTEPLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDYETVYRYGG
                     EEFIIIVK"
BASE COUNT          162 a          123 c           98 g          122 t
ORIGIN      
        1 tttgacaata atgataaatt cttcgccccc gtagcgataa accgtttcgt aatcacgcgt
       61 ccaactggct aagtaagttg ccagggtgcg taatactaca tcgccgatta aatgcccgta
      121 ggtatcatta accaatttaa atcggtcaat atccaacaac attaaataaa gattcagagg
      181 ctcagtgttg cgtaactgat gatcaaagga ttcattaaga acccgacgcc ccggcaatcc
      241 cgtcaaaaca tccatattgc tacggatcgt cagcaaataa attttgtaat cggttaatgc
      301 cgcagtaaaa gaaagcaacc cctcctgaaa ggcgtcgaaa tgcgcgtcct gccagtgatt
      361 ttcaacaata gccagcatta attcccgacc acagttatgc atatgttgat gggcagaatc
      421 cattagccga acgtaaggta attcatcgtt atcgagtggc cccagatgat caatccaccg
      481 accaaactgg cacagtccat aagaa
//
LOCUS       DADMHM010000441          500 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.447, whole genome shotgun sequence.
ACCESSION   DADMHM010000441 DADMHM010000000
VERSION     DADMHM010000441.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 500)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 500)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.447"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..286
                     /locus_tag="JN125_004364"
     CDS             <1..286
                     /locus_tag="JN125_004364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="reverse transcriptase"
                     /protein_id="HAY8873860.1"
                     /translation="TIKKWRIHRSTAESLLDFARHYNAIVRGWIEYYGKFWSRNFSYR
                     LWSAMQSRLLKWMQSKYRLSNRKAQRKLALVRKQYPKLFAHWYLLRASNE"
     gene            360..479
                     /locus_tag="JN125_004365"
                     /pseudo
     CDS             360..479
                     /locus_tag="JN125_004365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012904571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase domain-containing protein"
BASE COUNT          132 a          108 c          147 g          113 t
ORIGIN      
        1 aacaatcaag aagtggcgta tacatcgctc aacagctgag agtttgctgg attttgcgag
       61 gcactacaat gcgatagtga gaggctggat tgagtactat ggaaagttct ggtccagaaa
      121 cttcagctat cgactgtgga gtgcaatgca gtcacgtttg cttaagtgga tgcagtctaa
      181 atacagactt tcgaaccgga aggctcagcg aaagctggcg ctggtaagga aacagtatcc
      241 gaagctattt gcccactggt atttactacg tgcatcgaat gagtgatcaa gagccgtatg
      301 acgcgagagt gtcacgtacg gttccgtgag cagccggaga gtgaaactct ctccgacggg
      361 gttccgatag cggtggcgaa catgcggcgg tgttgtactc gctgatcggc acatgccgtc
      421 tgaacaatgt ggagccagaa aaatggctgc gttacgtcat tgagcatatc caggactgac
      481 cggcaaaccg ggtacgcgat
//
LOCUS       DADMHM010000442          500 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.448, whole genome shotgun sequence.
ACCESSION   DADMHM010000442 DADMHM010000000
VERSION     DADMHM010000442.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 500)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 500)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.448"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            40..294
                     /locus_tag="JN125_004366"
     CDS             40..294
                     /locus_tag="JN125_004366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001295976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HAY8873861.1"
                     /translation="MPRQLVKALPQYPAYAAANYIKGRVDVRFDIGADGTVTRIEFIR
                     SEPHHLFDEQVVKAMAKWRFEKDRPCKGVKKTFIFSPSAP"
BASE COUNT          119 a          103 c          128 g          150 t
ORIGIN      
        1 tcttctctgg ttatgggctg tacgcaacat aaaacagata tgccccgaca gttggttaag
       61 gcattaccac aatatccggc ctatgcagcg gcaaattata taaagggacg ggttgatgtg
      121 aggtttgata ttggtgctga tggtactgtc acccgaattg agtttattcg ttcagagccg
      181 caccatctgt ttgatgagca ggttgtaaag gcgatggcaa aatggcgatt tgagaaggac
      241 aggccgtgta aaggcgtgaa gaaaacgttt atctttagtc cttccgcacc ctgattattt
      301 catcagaaat taattatcac tctgttgtta ttctgtacat cccggcaggg taagtcttgt
      361 tccgtcggat atgaagatga aatattgttg gaggacagtg ggtacctgct cctgtaaccg
      421 aacgttcatt tctcgttatt tgtcatgctg gccgggcgca gatgcgttgc atctgttgcc
      481 agccttctcc tgcaggcttc
//
LOCUS       DADMHM010000443          487 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.449, whole genome shotgun sequence.
ACCESSION   DADMHM010000443 DADMHM010000000
VERSION     DADMHM010000443.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 487)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 487)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.449"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            1..333
                     /locus_tag="JN125_004367"
                     /pseudo
     CDS             1..333
                     /locus_tag="JN125_004367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000015219.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat protein"
BASE COUNT          134 a          113 c          135 g          105 t
ORIGIN      
        1 tacacgccgg cgcgaaaaat ccacctgtac cactgcgacc atcgcggcct gccgctggcg
       61 cttatcagca cggaaggggc aacagaatgg tgcgcagaat acgatgagtg gggcaacctg
      121 ctgaatgaag agaacccgca ccagctgcag cagcttatcc gtttgccggg gcagcagtat
      181 gatgaggagt ccggcctgta ttacaaccgc caccgctatt atgacccgct gcaggggcga
      241 tatatcactc aggacccaat tgggctgaag gggggatgga atttttatca gtatccgttg
      301 aatccgatct cagagataga cccacaaggg ttaaatccgt taattcttgg tgttgtagca
      361 ctgatgagtt gcggtttgtt ttcatcaggt ggggttatcc aaagtgggca acaacgcaga
      421 gatcaatatg gacgtaaagt taatccagaa gccgacaaat taacagatga acataagtca
      481 ggtgtaa
//
LOCUS       DADMHM010000444          484 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.450, whole genome shotgun sequence.
ACCESSION   DADMHM010000444 DADMHM010000000
VERSION     DADMHM010000444.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 484)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 484)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.450"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..>484
                     /locus_tag="JN125_004368"
     CDS             <1..>484
                     /locus_tag="JN125_004368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000963723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HAY8873862.1"
                     /translation="VGRSSGIRDRVLNINETADVWSYAYGNNLLTLSSIYNRRIMVIC
                     LVFGCRQQEARLSTWDEWDLKNWVWTVPKEHSKNKEAIVRPVPDGIKQWIVNLYAETK
                     NRGYVVGCALQRATITGAANRICRRLGHDTNGLWCIHDFRRTFSTTLNDMGADPYIVE
                     L"
BASE COUNT          140 a           92 c          123 g          129 t
ORIGIN      
        1 gtcgggcgct catccggtat aagggatcgc gttcttaata tcaatgaaac cgctgatgta
       61 tggtcttatg cttacggtaa taatttgcta actctgtcat caatatataa ccgaagaata
      121 atggttatct gcctggtgtt tggttgccga cagcaggagg cgaggctatc cacctgggac
      181 gaatgggatt taaaaaactg ggtatggaca gtcccaaaag agcacagcaa aaacaaggag
      241 gctatagtaa ggcctgttcc tgacggaata aaacaatgga tcgttaatct ttacgcagaa
      301 acaaaaaatc gcggttatgt tgtcggttgt gctttgcaaa gggcgacaat aacaggggct
      361 gcaaacagaa tatgcaggcg tcttggtcat gatactaatg gcttgtggtg catacatgat
      421 ttcaggcgca cattttccac tacgcttaat gatatggggg cggatcctta tattgtcgaa
      481 cttc
//
LOCUS       DADMHM010000445          479 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.451, whole genome shotgun sequence.
ACCESSION   DADMHM010000445 DADMHM010000000
VERSION     DADMHM010000445.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 479)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 479)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.451"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(233..>479)
                     /gene="dgcZ"
                     /locus_tag="JN125_004369"
     CDS             complement(233..>479)
                     /gene="dgcZ"
                     /locus_tag="JN125_004369"
                     /EC_number="2.7.7.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="diguanylate cyclase DgcZ"
                     /protein_id="HAY8873863.1"
                     /translation="AANDEEACRAGVRICQLVDNHAITHSEGHINITVTASVSRAFPE
                     EPLDVVIGRADRAMYEGKQTGRNRCMFIDEQNVINRV"
BASE COUNT          124 a          113 c          101 g          141 t
ORIGIN      
        1 atgggatgac taatgaacgg agataatccc tcacctaacc ggccccttgt tacaggttgt
       61 gtacaagggg cctgattttt atgatggcga aaaaaaaccg ccagtaaacc ggcggtgaat
      121 gcttgcatgg atagatttgt gttttgcttt tacgctaaca ggcattttcc tgcactgata
      181 acgaatcgtt gacacagtag catcagtttt ctcaatgaat gttaaacgga gcttaaactc
      241 ggttaatcac attttgttcg tcaataaaca tacagcgatt tcttcccgtt tgcttaccct
      301 catacattgc ccggtctgct cttccaatga ccacatccag aggctcttca ggaaatgcgc
      361 gactgacact tgctgtcacg gtaatgttga tatgcccttc agaatgtgtg atggcatggt
      421 tatcgactaa ctggcaaatt ctgacacctg cacgacatgc ttcttcatca ttagccgct
//
LOCUS       DADMHM010000446          473 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.452, whole genome shotgun sequence.
ACCESSION   DADMHM010000446 DADMHM010000000
VERSION     DADMHM010000446.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 473)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 473)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.452"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            89..358
                     /locus_tag="JN125_004370"
     CDS             89..358
                     /locus_tag="JN125_004370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001537095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF826 domain-containing protein"
                     /protein_id="HAY8873864.1"
                     /translation="MSEIKSLVTAEAVKEVLRSEEVRSALKQQLRQNLEARLDAEVDS
                     ILDELLGAPTVPEPEGIADDSAVSDGVGSQPDGSEGPQPDGEMMM"
BASE COUNT          124 a          111 c          140 g           98 t
ORIGIN      
        1 agcgccagtc agtcagccgg agcaaaaaca gaagccccac tcattccgga acaaccttct
       61 taataaccca tttcaacgag aaaatcctat gtcagaaata aaatcgctgg tcactgctga
      121 ggcagtgaag gaagtcctgc gctctgaaga agtccggagc gcactgaaac agcaacttcg
      181 gcagaacctt gaggcgcgtc ttgatgcaga agtggattca attctggatg aactgctggg
      241 cgcaccgact gttccggagc cggaaggcat tgcggatgac agtgctgttt cagatggcgt
      301 cgggtctcag cctgacggta gtgaagggcc tcagcctgac ggcgaaatga tgatgtaacc
      361 atgcgcaggg ggtgtcggtg tgagctgatg ccccacttgt tgttgtgagc ttccggattg
      421 cgggagacgg ggtatgtacc agatggaaaa aatcacaaca ggtgtgtcat aca
//
LOCUS       DADMHM010000447          461 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.453, whole genome shotgun sequence.
ACCESSION   DADMHM010000447 DADMHM010000000
VERSION     DADMHM010000447.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 461)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 461)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.453"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..>461
                     /locus_tag="JN125_004371"
     CDS             <1..>461
                     /locus_tag="JN125_004371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001458895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY8873865.1"
                     /translation="GKMASWLVEWKNATETQWLKDAPSQPLQQSLKDLERAYKNFFQN
                     RAAFPRFKKRGQNDVFRYPQGVKLDQENSRIFLPKLGWMRYRNSRQVTGVVKNVTVSQ
                     SCGKWYISIQTESKVSTPVHPSASMVGLDAGVAKLATLSDGTVFEPVNSFQ"
BASE COUNT          122 a          113 c          121 g          105 t
ORIGIN      
        1 cgggaaaatg gcttcctggc tggttgagtg gaaaaatgcc actgaaacgc aatggcttaa
       61 agatgccccg tcacagccat tgcaacagtc actgaaagac cttgagcggg cttacaaaaa
      121 cttcttccag aatcgggctg cttttccccg attcaaaaag cggggacaga atgatgtatt
      181 ccgctacccg cagggcgtta agctcgatca ggaaaacagc cgtatttttc tgccgaaact
      241 gggctggatg cgctaccgga acagccgtca ggtcacgggt gttgtgaaaa atgtcactgt
      301 cagccagtcc tgcggtaagt ggtacatcag tattcagaca gaaagtaaag tatcaactcc
      361 ggttcaccct tcagcatcaa tggtcgggct ggatgctggc gtggctaaac tcgccacgct
      421 gtcagatggc acagtctttg agcctgtaaa cagttttcag a
//
LOCUS       DADMHM010000448          460 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.454, whole genome shotgun sequence.
ACCESSION   DADMHM010000448 DADMHM010000000
VERSION     DADMHM010000448.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 460)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 460)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..460
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.454"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..415)
                     /locus_tag="JN125_004372"
     CDS             complement(<1..415)
                     /locus_tag="JN125_004372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
                     /protein_id="HAY8873866.1"
                     /translation="MFPDFFMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAE
                     SGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQAR
                     QRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAI"
BASE COUNT          115 a          118 c          142 g           85 t
ORIGIN      
        1 cgatggccag cagggtcagg ccgcaccagt gcggatgcgg cgtggcgtta tgccagagct
       61 gcgctgtttt cgtgaacacg cggcggacag cctcacttcc caggcgctgg cgggcctgaa
      121 taacggcact gggggcaacg aaggggcgat tgcccggcag catgatgtcc aggcgattca
      181 caatctggtg aagaggttct ttacgctcaa gcgccatgcc aacaatacac cagaccatca
      241 tttcgagggg aagacggcgc ttgcgtagcg ttacagtacc tgattcggca aggcaacgag
      301 agatgagttc ggggtcgagg taatccccca gagaagtcag tgggttacgc agagaatcgt
      361 aacgggatac cagatcaaga gcctgtccaa tgtgcataaa aaaatccgga aacaagtgag
      421 cgtttccgga ttcttacaca gccactggat cggtcaactg
//
LOCUS       DADMHM010000449          454 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.455, whole genome shotgun sequence.
ACCESSION   DADMHM010000449 DADMHM010000000
VERSION     DADMHM010000449.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 454)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.455"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..190)
                     /locus_tag="JN125_004373"
     CDS             complement(<1..190)
                     /locus_tag="JN125_004373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310575.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HAY8873867.1"
                     /translation="MKQPAPVYQRIAGHQWRHIWLSGDIHGSLEQLRRKLWHCRFDPW
                     RDLLISVGDVIDRGPQSLR"
BASE COUNT          151 a          104 c           81 g          118 t
ORIGIN      
        1 aacgtaaact ttgcggccca cgatcgataa cgtctcccac tgagataagt aaatctcgcc
       61 acggatcaaa acgacaatgc cataatttgc ggcgcaactg ctcaagagaa ccgtgtatat
      121 cgccagaaag ccagatatgt cgccattgat gacccgcaat tctctgataa acgggcgcag
      181 gctgtttcat caatattttc ctcccgcgct aaagatcaca taatcttaac aagaatgtta
      241 aaaaacgctg gactcagaca gtagagtgtg tgttatggtt gactataaag tcagcgaagg
      301 aaatgcttct ggcttttaac agataaaaag agaccgaaca cgattcctgt tttcgtcaac
      361 aaacaataaa accctttaaa attaatgcgt tgaataaatt tacgttcatc ttttaatccc
      421 tgacacgtac cattgcatat taatacattc aacc
//
LOCUS       DADMHM010000450          453 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.456, whole genome shotgun sequence.
ACCESSION   DADMHM010000450 DADMHM010000000
VERSION     DADMHM010000450.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 453)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.456"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            110..>453
                     /locus_tag="JN125_004374"
     CDS             110..>453
                     /locus_tag="JN125_004374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001063816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HAY8873868.1"
                     /translation="MNNNNTLYVGLDVHKESITVAYAINSEPVELMGKIGTSPTDIQN
                     LCKRLRSKSSQVSIVYEAGPCGYGLYRRLVKSGFDCMVCAPSLIPKKPGERVKTDRRD
                     AIRLVRSLRAGDL"
BASE COUNT          113 a          105 c          117 g          118 t
ORIGIN      
        1 tgagacagat gctggccaac gtgggatatt taacgcgggt taacatcgtt gtcagagccg
       61 catgggtgag ctgttgctac accccggtat ttccaccacg gaggccagca tgaacaacaa
      121 taacacattg tacgtcgggt tagatgttca caaagaatcg attactgtcg cttatgctat
      181 caattcagaa cctgttgaac tgatgggtaa aattggcaca tcacctactg atattcagaa
      241 tctttgtaaa cgtctcaggt caaagtcatc gcaggtcagt atcgtttatg aagcggggcc
      301 ctgtggttat ggactttatc gtcggctggt gaaatccggt tttgactgca tggtctgcgc
      361 cccctcactt atcccgaaaa aaccggggga gcgggttaaa accgatcgcc gtgatgccat
      421 cagacttgtg cgttcactgc gtgcaggaga tct
//
LOCUS       DADMHM010000451          446 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.457, whole genome shotgun sequence.
ACCESSION   DADMHM010000451 DADMHM010000000
VERSION     DADMHM010000451.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 446)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 446)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.457"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..>446
                     /locus_tag="JN125_004375"
     CDS             <1..>446
                     /locus_tag="JN125_004375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="shiE"
                     /protein_id="HAY8873869.1"
                     /translation="ETKAAYRCFSNDKVSANKIMAPHKENITERAQQFKRVLVLQDTT
                     ELNYSGQKEKQGVGHKKHKDERNLFLHPQLVISESGVCLGVYDDYQWFRDELKTSKNT
                     RQEICNDLLHKKHVSEKETWRWVEGYNKATELARQCPDTHVLSISD"
BASE COUNT          165 a           76 c           84 g          121 t
ORIGIN      
        1 gtgaaacaaa ggcagcttat cgttgttttt caaacgataa agtctctgct aataaaatta
       61 tggctcctca caaagaaaat atcactgaaa gagctcagca gtttaaaaga gttttagttt
      121 tacaggatac aacagaactt aattattctg gtcagaaaga aaaacaagga gttggtcaca
      181 aaaaacataa agatgaaaga aacttatttc ttcatcctca actcgtcatc agtgagtcag
      241 gtgtttgcct cggtgtttat gatgactatc agtggttcag ggatgaatta aaaaccagta
      301 aaaatacccg acaagaaatc tgcaatgatt tacttcataa aaaacatgtc agtgaaaaag
      361 aaacctggcg ttgggttgaa ggatataata aagcaacaga actggctcgc caatgccctg
      421 atacccatgt attgtcaatt tctgat
//
LOCUS       DADMHM010000452          439 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.458, whole genome shotgun sequence.
ACCESSION   DADMHM010000452 DADMHM010000000
VERSION     DADMHM010000452.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 439)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 439)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..439
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.458"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..>439
                     /locus_tag="JN125_004376"
     CDS             <1..>439
                     /locus_tag="JN125_004376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000343760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY8873870.1"
                     /translation="PVESRRQAKGTRFLWQHSDKWMTESRQEKLIWLRAQMKLTSLCW
                     ALKELAKDIWSRPWSEERRNDWQRWLSLAANSDVPMMKNVAKTIGKRLYGILNAMRHG
                     VSNGNAEALNSKIRLLRIKAKGYRNRERFKLGVMFHYGKLNMAF"
BASE COUNT          128 a           95 c          139 g           77 t
ORIGIN      
        1 cctgttgaaa gtcgtcgtca ggcaaaggga actcgcttcc tgtggcagca cagcgataaa
       61 tggatgaccg aatccaggca ggaaaagctg atatggctgc gtgcgcagat gaagctgacg
      121 agcctgtgct gggcgctgaa agaactggca aaggatatct ggagcagacc atggagcgag
      181 gaaagacgca acgactggca gagatggctg tcgctggcgg ccaacagtga cgtccccatg
      241 atgaagaatg tggctaaaac gatagggaaa aggttgtacg gtatcctgaa cgccatgcgc
      301 catggcgtat caaacggaaa tgcggaagca ctgaacagca agatcaggct gctgagaata
      361 aaagccaagg gctaccgcaa ccgggagcgc tttaagctgg gagtgatgtt ccactatggg
      421 aaactgaata tggcgttct
//
LOCUS       DADMHM010000453          437 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.459, whole genome shotgun sequence.
ACCESSION   DADMHM010000453 DADMHM010000000
VERSION     DADMHM010000453.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 437)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 437)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..437
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.459"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..120
                     /locus_tag="JN125_004377"
     CDS             <1..120
                     /locus_tag="JN125_004377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiG family protein"
                     /protein_id="HAY8873871.1"
                     /translation="SDWDKEQLQDANSSWMVEDSFPRALREYNEMVDDYNSLR"
     gene            complement(170..>437)
                     /locus_tag="JN125_004378"
     CDS             complement(170..>437)
                     /locus_tag="JN125_004378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PTS transporter subunit EIIA"
                     /protein_id="HAY8873872.1"
                     /translation="NLIVNRLAIPHCWSEQERRFRGFFITLAQPVEVNNEVINHVLIA
                     CAAADARHELKIFSYLASILCQHPAEVIAGLTGYEAFMELLHKG"
BASE COUNT          122 a          103 c          106 g          106 t
ORIGIN      
        1 tctgactggg ataaagagca acttcaggac gcaaactcaa gctggatggt cgaagactct
       61 ttcccgagag cattacgcga gtacaacgaa atggttgatg actataatag cctgcgttaa
      121 acgttcttga tgataaatgc agtgtcggat gcggcgcatc cgacacagtt caccccttgt
      181 gaagtaactc cataaatgcc tcatatcctg ttaacccggc aataacctct gccggatgct
      241 gacacaatat gcttgccaga tagctaaata tttttagctc atgacgcgca tcggcggcgg
      301 cgcaggcgat caagacatgg ttaatgactt cgttattcac ctcaactggt tgggcgaggg
      361 taataaaaaa tccacgaaaa cgtcgctcct gttcgctcca gcaatgtggg atggcgaggc
      421 gattaacaat caggttt
//
LOCUS       DADMHM010000454          419 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.460, whole genome shotgun sequence.
ACCESSION   DADMHM010000454 DADMHM010000000
VERSION     DADMHM010000454.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 419)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.460"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            77..>419
                     /locus_tag="JN125_004379"
     CDS             77..>419
                     /locus_tag="JN125_004379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HAY8873873.1"
                     /translation="MQWYLAVLKNYVGFSGRARRKEYWMFTLINAIVGAIINVIQLIL
                     GLEFPFLSLIYLAATIIPVIALCVRRLHDTDRSGAWALLYLVPIIGWLVLFVFACLEG
                     NSGSNRYGNDPK"
BASE COUNT          101 a           83 c           90 g          145 t
ORIGIN      
        1 aaaaagaaag atacgaatag catttacaca atacccggaa tagactttcg tcacttttaa
       61 ttaaagggat gtttttatgc agtggtattt agccgtatta aaaaattatg ttggtttctc
      121 tggtcgcgca cgtcgtaaag agtactggat gtttactctg attaacgcca tcgtcggcgc
      181 tattatcaat gtcattcaat tgattttagg tttagagttt ccattccttt ctctcattta
      241 cctggcagca acaatcattc cggtcattgc tctgtgtgtt cgtcgtctgc acgatactga
      301 ccgttcaggt gcgtgggcgc ttctctatct ggtaccgatc attggctggt tagttctgtt
      361 tgtatttgcc tgtttagaag gcaattctgg cagcaatcgt tacggaaacg atcctaagt
//
LOCUS       DADMHM010000455          414 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.461, whole genome shotgun sequence.
ACCESSION   DADMHM010000455 DADMHM010000000
VERSION     DADMHM010000455.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 414)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 414)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.461"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..206)
                     /locus_tag="JN125_004380"
     CDS             complement(<1..206)
                     /locus_tag="JN125_004380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_304968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="host specificity protein J"
                     /protein_id="HAY8873874.1"
                     /translation="MGKGGGKAHTPREAKDNLKSTQMMSVIDAIGEGPIEGPVKGLQS
                     ILVNKTPLTDTDGNPVIHGVTAVWR"
     gene            complement(187..414)
                     /locus_tag="JN125_004381"
                     /pseudo
     CDS             complement(187..414)
                     /locus_tag="JN125_004381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000559722.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT           99 a          127 c           76 g          112 t
ORIGIN      
        1 cgccagaccg ccgtcacacc gtgtatcacg ggattgccgt ccgtgtccgt cagtggggtt
       61 ttgttcacca gaatactctg cagtcccttc accggacctt ctatcggtcc ctcaccaatc
      121 gcatcaatca cactcatcat ctgcgtggat ttgagattat ccttcgcctc acgaggcgtg
      181 tgtgccttac cgccaccttt tcccatacag ccttcccctg aataaattaa ccgccacttt
      241 ccattccgta cagaagtcgg atatccttcg cccgaaaagc atgaaacaca tttctgccat
      301 gctaaagaaa accccggtat cagcagatac cggggttttc tttcatgccc accgataatc
      361 ctgttggtta aaaccggtaa tggcataaaa attctgaata tcttcacatt ttca
//
LOCUS       DADMHM010000456          409 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.462, whole genome shotgun sequence.
ACCESSION   DADMHM010000456 DADMHM010000000
VERSION     DADMHM010000456.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.462"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            30..>409
                     /locus_tag="JN125_004382"
     CDS             30..>409
                     /locus_tag="JN125_004382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416733.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2138 family protein"
                     /protein_id="HAY8873875.1"
                     /translation="MSGEKKAKGWRFYGLVGFGAIVLLSAGVWALQYAGSGPEKTLSP
                     LVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIE
                     GSIRRIVYEHDLTLKDKLFSSLLD"
BASE COUNT           98 a           97 c          101 g          113 t
ORIGIN      
        1 atggctggct atacacaagg aatgtggcaa tgagtggtga aaaaaaggcg aaaggctggc
       61 ggttctatgg tcttgtaggt tttggcgcaa tagtactgct ttccgctggc gtctgggcgt
      121 tgcaatatgc tggcagtggg ccagaaaaaa cgttgtcgcc gctggtggtg cacaacaatc
      181 tgcaaatcga tctcaatgag ccggacctct ttctcgacag cgactctctg agccagcttc
      241 ccaaagatct cctcaccatt ccgtttctcc acgatgttct gagtgaagat ttcgttttct
      301 attatcagaa tcatgccgat cgtctgggca ttgaaggcag cattcgtcgc attgtctatg
      361 aacacgatct cacgctgaaa gataaactct tttcgtcact cttagatca
//
LOCUS       DADMHM010000457          405 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.463, whole genome shotgun sequence.
ACCESSION   DADMHM010000457 DADMHM010000000
VERSION     DADMHM010000457.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 405)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 405)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.463"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..>405
                     /locus_tag="JN125_004383"
     CDS             <1..>405
                     /locus_tag="JN125_004383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY8873876.1"
                     /translation="GTRILGVKEYICDKPECPHVRYVTNSCGSRACPSCGKKATDLWI
                     ATQLNRLPDCDWVHLVFTLPDTLWPVFESNRWLLNDVCRLAVENLLYAARKRGQEPGI
                     FCAIHTYGRRLNWHPHVHVSVTCGGLNKHGQWK"
BASE COUNT           88 a          113 c          121 g           83 t
ORIGIN      
        1 ggcacgcgga tactgggagt gaaggaatac atctgcgata aacctgagtg cccccacgtc
       61 agatacgtca ctaactcatg cggcagccgt gcctgcccgt cctgcggaaa aaaggccaca
      121 gacctgtgga tagcgacaca gctgaatcgt cttcctgact gcgactgggt acacctggtc
      181 ttcaccctgc cggacacgct gtggccggtg ttcgaaagca accggtggct gctgaatgac
      241 gtgtgccgtc tggcggtgga gaatctgctg tatgccgccc ggaaacgggg gcaggaaccc
      301 ggtatcttct gcgccatcca cacgtatggc cgtcgtctca actggcatcc gcatgtacat
      361 gtgtctgtaa cctgtggagg tctgaataag catggtcagt ggaaa
//
LOCUS       DADMHM010000458          404 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.464, whole genome shotgun sequence.
ACCESSION   DADMHM010000458 DADMHM010000000
VERSION     DADMHM010000458.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 404)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 404)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..404
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.464"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            1..404
                     /locus_tag="JN125_004384"
                     /pseudo
     CDS             1..404
                     /locus_tag="JN125_004384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612230.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="IS1 family transposase"
BASE COUNT           92 a          111 c          108 g           93 t
ORIGIN      
        1 cttctgtttc tatcagctgt ccctcctgtt cagctactga cggggtggtg cgtaacggca
       61 aaagcactgc cggacatcag cgctatctct gctctcactg ccgtaaaaca tggcaactgc
      121 agttcactta caccgcttct caacccggta cgcaccagaa aattattgat atggccatga
      181 atggcgttgg atgccgggca actgcacgca ttatgggcgt tagcctcaac acgattttac
      241 gtcacttaaa aaactcaggc cgcagtcggt aacctcgcgc atacagccgg gcagtgacgt
      301 catcgtctgc gcggaaatgg acgaacagtg gggatacgtc ggggctaaat cgcgccagcg
      361 ctggctgttt tacgcgtatg acaggctccg gaagacggtt gttg
//
LOCUS       DADMHM010000459          404 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.465, whole genome shotgun sequence.
ACCESSION   DADMHM010000459 DADMHM010000000
VERSION     DADMHM010000459.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 404)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 404)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..404
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.465"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            74..404
                     /locus_tag="JN125_004385"
                     /pseudo
     CDS             74..404
                     /locus_tag="JN125_004385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000420980.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ISAs1 family transposase"
BASE COUNT          125 a           67 c           78 g          134 t
ORIGIN      
        1 ttccttatta cctgaagctg tttttcatag cttatacatg atcaaatact ccttacataa
       61 ataaggtgaa caaatggaac ttaaaaaatt gatggaacat atttctatta ttcccgatta
      121 cagataagcc tggaaagtag agcataaatt gtcaggcatc ctactattga ctatttttgc
      181 cgttatttct ggtgcagaaa gttgggaaga tatagaggat ttcggggaaa cacatctcga
      241 tttcttgaag caatatggtg attttgaaaa tggtattcct gttcacgata ctattgccag
      301 agttgtatcc tgtatcagtc ctgcaaaatt tcatgagtgc tttattaact ggatgcgtga
      361 ctgccattct tcagatgata aagacgtcat cgcaattgat ggaa
//
LOCUS       DADMHM010000460          401 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.466, whole genome shotgun sequence.
ACCESSION   DADMHM010000460 DADMHM010000000
VERSION     DADMHM010000460.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 401)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 401)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..401
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.466"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..>401
                     /locus_tag="JN125_004386"
     CDS             <1..>401
                     /locus_tag="JN125_004386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415825.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sugar phosphorylase"
                     /protein_id="HAY8873877.1"
                     /translation="NDYAGVEKLGYNRAINRKKYHSKEITRELNDEATLRHAVYHELS
                     RLITPRRSHNEFHPDNNFTIDTINSSVMRIQRSNADGNCLTGLFNVSKNIQHVNITNL
                     HGRDLISEVDILGNEITLRPWQVMWIKVMTP"
BASE COUNT          132 a           68 c           86 g          115 t
ORIGIN      
        1 taatgattac gcaggtgtcg aaaaactcgg atataaccgt gcgattaacc gtaaaaaata
       61 tcacagtaaa gagataaccc gagaactgaa cgatgaagct acattaaggc atgcggtata
      121 tcatgagttg tcgcgtttaa ttacacctcg tcgcagccat aacgagtttc atccggataa
      181 taattttacc atcgatacga ttaattcatc cgtaatgcgt attcaaagaa gtaacgctga
      241 tggtaattgt ctgactggat tgtttaatgt cagtaaaaat attcagcatg taaatattac
      301 taatctgcat ggtcgggatc tgattagtga agttgatata ttgggtaatg aaataacgct
      361 gcgcccctgg caggttatgt ggattaaggt aatgactcca a
//
LOCUS       DADMHM010000461          395 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.467, whole genome shotgun sequence.
ACCESSION   DADMHM010000461 DADMHM010000000
VERSION     DADMHM010000461.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 395)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 395)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..395
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.467"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..384
                     /locus_tag="JN125_004387"
     rRNA            <1..384
                     /locus_tag="JN125_004387"
                     /product="16S ribosomal RNA"
BASE COUNT          103 a           95 c          115 g           82 t
ORIGIN      
        1 actggaggaa ggtggggatg acgtcaagtc atcatggccc ttacgaccag ggctacacac
       61 gtgctacaat ggcgcataca aagagaagcg acctcgcgag agcaagcgga cctcataaag
      121 tgcgtcgtag tccggattgg agtctgcaac tcgactccat gaagtcggaa tcgctagtaa
      181 tcgtggatca gaatgccacg gtgaatacgt tcccgggcct tgtacacacc gcccgtcaca
      241 ccatgggagt gggttgcaaa agaagtaggt agcttaacct tcgggagggc gcttaccact
      301 ttgtgattca tgactggggt gaagtcgtaa caaggtaacc gtaggggaac ctgcggttgg
      361 atcacctcct taccttaaag aagcgtactt tgcag
//
LOCUS       DADMHM010000462          393 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.468, whole genome shotgun sequence.
ACCESSION   DADMHM010000462 DADMHM010000000
VERSION     DADMHM010000462.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 393)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 393)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..393
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.468"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..347
                     /locus_tag="JN125_004388"
     CDS             <1..347
                     /locus_tag="JN125_004388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_416381.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hydrolase"
                     /protein_id="HAY8873878.1"
                     /translation="PAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRR
                     RGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIA
                     RVRSVEEILHAL"
BASE COUNT           94 a          101 c          104 g           94 t
ORIGIN      
        1 cccccgctaa agtgttgccc gaaaactggt ggcaacatcc agctgcatta ggtgcaactg
       61 acagtgatat cgaaatcatc aaacgtcagt ggggtgcgtt ttacggtacg gatctggagt
      121 tgcaactgcg ccgccgaggt atcgatacaa tagtgttatg tgggatctcg accaatatcg
      181 gtgttgaatc caccgcccgc aatgcctggg aacttggctt taatctggtg attgccgaag
      241 acgcctgtag tgccgccagc gccgagcaac acaataacag cattaatcat atctacccgc
      301 gcatcgcccg tgtgcgtagc gtggaagaga tccttcacgc gttatgattt acatcggtct
      361 accgcaatgg tcgcatccta aatgggtgcg gtt
//
LOCUS       DADMHM010000463          386 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.469, whole genome shotgun sequence.
ACCESSION   DADMHM010000463 DADMHM010000000
VERSION     DADMHM010000463.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 386)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 386)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.469"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            45..>386
                     /locus_tag="JN125_004389"
     CDS             45..>386
                     /locus_tag="JN125_004389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005031985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HAY8873879.1"
                     /translation="MVKLASQPGASVARIAREHDINDNLLFKWLRLWQNEGRISRRLP
                     VTTSSDTGVELLPVEITPDEPKEPVAALTPSLSTQTTVSASSCKVEFRHGNMTLENPS
                     PELLTVLIRELT"
BASE COUNT           97 a          103 c           91 g           95 t
ORIGIN      
        1 ctgcagaacc ccgcagatca ttttcaaatg agtttaaact tcaaatggtt aaactggctt
       61 cacaaccagg agcctctgtt gcccgtattg cccgggaaca cgatatcaat gataacctgc
      121 tgttcaaatg gctcaggctc tggcagaacg aagggcgcat atcgcggcgt cttccggtaa
      181 caacctcttc tgacactggc gttgaattat tacctgtgga gataacgccg gatgagccga
      241 aagaaccggt ggctgctctt actccgtctt tatctactca gactacagtt agtgccagct
      301 cctgcaaggt ggagttccgt cacggtaaca tgacgctgga aaatccttca ccagagctgc
      361 tcacagtgtt gatccgtgaa ctgacc
//
LOCUS       DADMHM010000464          383 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.470, whole genome shotgun sequence.
ACCESSION   DADMHM010000464 DADMHM010000000
VERSION     DADMHM010000464.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 383)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 383)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.470"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            185..340
                     /locus_tag="JN125_004390"
                     /pseudo
     CDS             185..340
                     /locus_tag="JN125_004390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000343613.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS256 family transposase"
BASE COUNT          120 a           83 c           98 g           82 t
ORIGIN      
        1 agagagcaga acgggatcta tacttttgcg ggtcaacata agaggatgag tccttaataa
       61 aacaggtcct cagagaatac atattctgcg gagcgtgcgg caacaacagg acgaacaggg
      121 gcggttttca atttgcagcc gtcaggctgc cgtggttcac tccaacaacg gagacaggta
      181 aattatggac gaaaagaagc ttaaagccct tgcggctgaa ctggctaaag gcctcaaaac
      241 cgaggccgac ctcaatcagt tttcccgtat gcagacgaaa ttaactgtcg aaacggtgct
      301 taatgcggaa ctaactgacc atctcgggca tgaaaaaagc tacatccggt agtaaacatt
      361 atcagtgggt tatgcgatat gat
//
LOCUS       DADMHM010000465          373 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.471, whole genome shotgun sequence.
ACCESSION   DADMHM010000465 DADMHM010000000
VERSION     DADMHM010000465.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 373)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 373)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..373
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.471"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..>373)
                     /locus_tag="JN125_004391"
     CDS             complement(<1..>373)
                     /locus_tag="JN125_004391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010921623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="IS110 family transposase"
                     /protein_id="HAY8873880.1"
                     /translation="YPVLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTR
                     RSGSSIRGEHPSRRGNKALKRALFLSAFAALRDPLSRAYYTRKMSQGKRHNQALIALA
                     RRRCDVLFAMMRDGTFYTPQGS"
BASE COUNT           76 a          105 c          126 g           66 t
ORIGIN      
        1 tgacccctgc ggggtataaa aagtcccgtc gcgcatcatg gcgaacagaa cgtcgcagcg
       61 tcgtctcgcc agggcgataa gcgcctgatt gtgtcgtttt ccctgactca ttttgcgggt
      121 gtagtaagcc ctggagagcg gatccctgag cgcggcgaag gccgacagga acaacgcccg
      181 tttgagagct ttattacccc gtcgcgaggg atgctcaccg cgtattgacg agccggatcg
      241 ccgagttacc ggcgcaaggc cagcataagc agcgagatgt gcggcagagg cgaaggcgcg
      301 gcaggcgacc tcggtgagga gtctggctgc ggtcctgaca ccgactccgg gcatactggt
      361 caggaccggg taa
//
LOCUS       DADMHM010000466          371 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.472, whole genome shotgun sequence.
ACCESSION   DADMHM010000466 DADMHM010000000
VERSION     DADMHM010000466.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 371)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 371)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.472"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..>371
                     /locus_tag="JN125_004392"
     CDS             <1..>371
                     /locus_tag="JN125_004392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HAY8873881.1"
                     /translation="ADFTYVSTWQGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDAL
                     EQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGL
                     YKAEVIHRKSWKNRAEVELATL"
BASE COUNT           90 a           87 c          110 g           84 t
ORIGIN      
        1 gctgatttta cttacgtcag cacatggcag ggcttcgtct atgtggcgtt catcattgat
       61 gtgtttgccg gatacatcgt ggggtggcgg gtctcatcgt ccatggaaac gacattcgtg
      121 ctggatgctc tggagcaggc gttatgggcc cgtcgaccgt ccggcacggt ccatcacagt
      181 gataaaggtt ctcagtatgt atcgctggcc tacacacagc ggcttaagga agccggatta
      241 ctggcatcaa caggaagtac aggcgactcg tatgacaacg cgatggcgga gagcatcaat
      301 ggtctttaca aagcggaggt aatacaccgt aagagctgga aaaaccgtgc agaagtggaa
      361 ctggccacac t
//
LOCUS       DADMHM010000467          365 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.473, whole genome shotgun sequence.
ACCESSION   DADMHM010000467 DADMHM010000000
VERSION     DADMHM010000467.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 365)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 365)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..365
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.473"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(1..365)
                     /locus_tag="JN125_004393"
                     /pseudo
     CDS             complement(1..365)
                     /locus_tag="JN125_004393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313048.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          114 a           68 c           60 g          123 t
ORIGIN      
        1 agcgctggga gcttaccacc ataacaggcc catcatcgac agaggagaac aggataaata
       61 tattatcgtt tcgtgttaat ttattagtgt taaaggttct taacttttct tcagtttcta
      121 taaatatagg tgaaacatca tcactacgaa tccactcttt ataaagatac caggcatttg
      181 ctttgatcat atcatccgtt gatcgtaagg cctgatcgat aagttggata aaaaattgtt
      241 atttttatca atcagccctt tattcatatt aaacctgtta ataaaatgga tcatctgttg
      301 ggtatcgaaa tccaccttgc tgaatcgatg ttgacgcata aaatcatcga acttgttatc
      361 ttcac
//
LOCUS       DADMHM010000468          363 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.474, whole genome shotgun sequence.
ACCESSION   DADMHM010000468 DADMHM010000000
VERSION     DADMHM010000468.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 363)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.474"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(1..106)
                     /locus_tag="JN125_004394"
                     /pseudo
     CDS             complement(1..106)
                     /locus_tag="JN125_004394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001672075.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus and C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1472 domain-containing protein"
     gene            237..363
                     /locus_tag="JN125_004395"
                     /pseudo
     CDS             237..363
                     /locus_tag="JN125_004395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006322674.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="IS110 family transposase"
BASE COUNT           98 a          104 c           91 g           70 t
ORIGIN      
        1 catccccgcc agcccggcta agatggaggc acggcacagc ccgcacacga cgctgaggct
       61 acagagctga aaacccacaa ggccatgccc cgcatggccg ggtaaagcgg agccggcggc
      121 gacttccttt gtgctctgtc cgggaccggc aggaaaaagg cggggataat gagatggtca
      181 cccccaccct aacagcagta cgctgttaag gtgaatccct taacggagag accatcatac
      241 agaacatcac acttattggt atcgatctcg gaaagcattc cttccacatt cattgtcaag
      301 acaagtctgg taaggctctt ctgcgtaaaa aatttaccca gtactaaact gatgcagttt
      361 ctg
//
LOCUS       DADMHM010000469          345 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.475, whole genome shotgun sequence.
ACCESSION   DADMHM010000469 DADMHM010000000
VERSION     DADMHM010000469.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 345)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 345)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.475"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..>345
                     /locus_tag="JN125_004396"
     CDS             <1..>345
                     /locus_tag="JN125_004396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858326.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelB/DinJ family
                     antitoxin"
                     /protein_id="HAY8873882.1"
                     /translation="NARIDDDIKNQADEVLKLMNISQTQAIAAFYQYITEQKKLPFVI
                     TSIVKTPHDLLRESTDMLAEALAVISNLQVWTEQQDGIGKAKLMEYYRRLDALYCCAK
                     EKIGLLSDNRDAE"
BASE COUNT          115 a           63 c           78 g           89 t
ORIGIN      
        1 aacgcacgta ttgatgatga tataaagaac caagcagatg aagtgctgaa gctgatgaat
       61 atcagtcaaa ctcaggctat tgcagctttt tatcagtata ttactgaaca aaagaaactg
      121 ccatttgtga tcacctcaat tgtaaaaacg ccgcatgatt tattacgtga aagtacagac
      181 atgttagctg aagctcttgc agtgatttcc aatctacagg tgtggactga acagcaggat
      241 gggattggaa aagcaaagct aatggagtat taccgccgcc tcgacgcact gtactgttgt
      301 gcaaaagaga aaataggtct tctttcagat aaccgggatg ctgaa
//
LOCUS       DADMHM010000470          331 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.476, whole genome shotgun sequence.
ACCESSION   DADMHM010000470 DADMHM010000000
VERSION     DADMHM010000470.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 331)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 331)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..331
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.476"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..>331
                     /locus_tag="JN125_004397"
     CDS             <1..>331
                     /locus_tag="JN125_004397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_858395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS91 family transposase"
                     /protein_id="HAY8873883.1"
                     /translation="NMRQLLLKAWSEGLAMPESLSHITTESQWRSLVLKAGGKYWHVY
                     MSKKTAGGRNTARYLGRYLKKPPIAASRLAHYNVGASLNFRYLDHKTGETATETLTQR
                     ELVARLK"
BASE COUNT           87 a           80 c          111 g           53 t
ORIGIN      
        1 ggaatatgcg gcagctgctt ctgaaagcgt ggtcagaggg gctggcgatg ccggagtcgt
       61 tgtcacatat cacgacggaa tcacagtgga gaagcctggt gctgaaagcc ggaggaaaat
      121 actggcatgt gtacatgtcg aaaaaaacgg ccggcgggag gaatacggcg cgctacctgg
      181 gtcgttatct gaagaagccg ccgatagcgg cctcccggct ggcacattac aacgtagggg
      241 cgagcctgaa cttccgttac ctggaccaca aaacgggaga aacggcgacg gaaacgctga
      301 cacagcgtga gctggtcgcg aggctgaaac a
//
LOCUS       DADMHM010000471          331 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.477, whole genome shotgun sequence.
ACCESSION   DADMHM010000471 DADMHM010000000
VERSION     DADMHM010000471.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 331)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 331)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..331
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.477"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            224..>331
                     /locus_tag="JN125_004398"
     CDS             224..>331
                     /locus_tag="JN125_004398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_415522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine acid phosphatase"
                     /protein_id="HAY8873884.1"
                     /translation="MNKTLIAAAVAGIVLLASNAQAQTVPEGYQLQQVLM"
BASE COUNT           97 a           74 c           79 g           81 t
ORIGIN      
        1 tattggtaac gccgcagata ttctgtttag ccacaggtgc aattatcagc ggcgtacgcg
       61 aggcaggggc taatcaggca tagtttgcgt caaaccttgc ctgtttttga agatgtatat
      121 agaaaaacag gcgttcaaca agccattttg cgaacctgtt cccggaaaaa agtcatattt
      181 ctgtcacact ctttagtgat tgataacaaa agaggtgcca ggaatgaaca aaacgctaat
      241 cgccgcagct gtggcaggga tagttttact cgcttcaaac gctcaggcac aaaccgtacc
      301 ggaaggctat cagctacagc aagtgctcat g
//
LOCUS       DADMHM010000472          326 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.478, whole genome shotgun sequence.
ACCESSION   DADMHM010000472 DADMHM010000000
VERSION     DADMHM010000472.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 326)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 326)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.478"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..>326
                     /locus_tag="JN125_004399"
     CDS             <1..>326
                     /locus_tag="JN125_004399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate decarboxylase"
                     /protein_id="HAY8873885.1"
                     /translation="EYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACML
                     GGMAMKWRWRKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDVELREIPMRPGQLFMD
                     PKRMIEA"
BASE COUNT           74 a           85 c           97 g           70 t
ORIGIN      
        1 gaatatccgc aatccgcagc catcgacctg cgttgcgtaa atatggttgc cgatctgtgg
       61 catgcgcctg cgccgaaaaa tggtcaggcc gttggcacca acaccattgg ttcttccgag
      121 gcctgtatgc tcggcgggat ggcgatgaaa tggcgttggc gcaagcgtat ggaagctgca
      181 ggcaaaccaa cggataaacc aaacctggtg tgcggtccgg tacaaatctg ctggcataaa
      241 ttcgcccgct actgggatgt ggagctgcgt gagatcccta tgcgccccgg tcagttgttt
      301 atggacccga aacgcatgat tgaagc
//
LOCUS       DADMHM010000473          326 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.denovo.479, whole genome shotgun sequence.
ACCESSION   DADMHM010000473 DADMHM010000000
VERSION     DADMHM010000473.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 326)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 326)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.denovo.479"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(<1..>326)
                     /locus_tag="JN125_004400"
     CDS             complement(<1..>326)
                     /locus_tag="JN125_004400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873886.1"
                     /translation="ALYERSQLTQVMISSAPATAETMDKAEYLRLDCTIKEVQFTAGQ
                     KQDIDVTTLCSTEQENINGLGASSEISMSGNFYLNQAQNALRDAYDNDALYAFKVLFP
                     SGKGFK"
BASE COUNT           81 a           89 c           80 g           76 t
ORIGIN      
        1 tttaaagccc ttaccggacg gaaacagcac cttaaacgca tacaacgcgt cattgtcata
       61 ggcatcacgc agggcgttct gggcctgatt cagataaaaa ttacccgaca tggaaatctc
      121 agacgacgcc cccagaccgt tgatgttctc ctgctctgtg gagcagagcg tggtcacatc
      181 aatatcctgt ttctgaccgg cggtgaactg gacttccttg atggtgcagt ccaggcgcag
      241 atattccgcc ttatccatag tttcagcagt cgccggggca gatgaaatca tcacctgcgt
      301 cagctgtgag cgttcataca aagcag
//
LOCUS       DADMHM010000474        35731 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.guided.016, whole genome shotgun sequence.
ACCESSION   DADMHM010000474 DADMHM010000000
VERSION     DADMHM010000474.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 35731)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35731)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35731
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.guided.016"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(40..645)
                     /locus_tag="JN125_004401"
                     /pseudo
     CDS             complement(40..645)
                     /locus_tag="JN125_004401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709462.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial biogenesis outer membrane usher
                     protein"
     gene            complement(670..1401)
                     /locus_tag="JN125_004402"
     CDS             complement(670..1401)
                     /locus_tag="JN125_004402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001572122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fimbrial chaperone"
                     /protein_id="HAY8873887.1"
                     /translation="MSRKSCLIRLFKTTVSCKLFTAIILSIFLGQPALTYAGVVIGGT
                     RGVYLSNNADKSISVFSKEEKIPYLIQAWVDPFNKEDKSKAPFTVIPPVSRLEPSQEK
                     ILRIIHTKGVSLPDYRESVFWLNIKNIPPSASNKATNSLEIAVKTRIKLFWRPANIRL
                     IPEDAAPKVKWRREGRNLIAENPNPIHISVMDVIVDGHDVPLNMIRPFETLTLPLPAN
                     SAGGQMTWRFINDYGAVSDPIKMTL"
     gene            complement(1449..2021)
                     /locus_tag="JN125_004403"
     CDS             complement(1449..2021)
                     /locus_tag="JN125_004403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_709540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="long polar fimbria major subunit LpfA-O113"
                     /protein_id="HAY8873888.1"
                     /translation="MKRNIIGGAFTLASLMLAGHALAEDGVVHFVGEIVDTTCEVTSD
                     TADQIVPLGKVSKNAFSGVGSLASPQKFSIKLENCPATYTQAAVRFDGTEAPGGDGDL
                     KVGTPLTAGNPGDFTGTGQAIAATGVGIRIFNQSDNSQVKLYNDSAYTAIDAEGKAEM
                     KFIARYVATNATVTAGTANADSQFTVEYKK"
     gene            2812..3051
                     /locus_tag="JN125_004404"
     CDS             2812..3051
                     /locus_tag="JN125_004404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001353740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1819 family protein"
                     /protein_id="HAY8873889.1"
                     /translation="MTPFRYNSDLTSGSLQTRECRIITGLLLQELDEAAWDKAMYKEN
                     VLQKRTQSTVRRISSALRKRLEHLSSDFWAFAFLC"
     gene            complement(3239..4216)
                     /gene="intI2"
                     /locus_tag="JN125_004405"
                     /pseudo
     CDS             complement(3239..4216)
                     /gene="intI2"
                     /locus_tag="JN125_004405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_023994230.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class 2 integron integrase IntI2"
     gene            4548..5021
                     /locus_tag="JN125_004406"
     CDS             4548..5021
                     /locus_tag="JN125_004406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001355915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimethoprim-resistant dihydrofolate reductase
                     DfrA1"
                     /protein_id="HAY8873890.1"
                     /translation="MKLSLMVAISKNGVIGNGPDIPWSAKGEQLLFKAITYNQWLLVG
                     RKTFESMGALPNRKYAVVTRSSFTSDNENVLIFPSIKDALTNLKKITDHVIVSGGGEI
                     YKSLIDQVDTLHISTIDIEPEGDVYFPEIPSNFRPVFTQDFASNINYSYQIWQKG"
     gene            5116..5640
                     /gene="sat2"
                     /locus_tag="JN125_004407"
     CDS             5116..5640
                     /gene="sat2"
                     /locus_tag="JN125_004407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000704156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="streptothricin N-acetyltransferase Sat2"
                     /protein_id="HAY8873891.1"
                     /translation="MKISVIPEQVAETLDAENHFIVREVFDVHLSDQGFELSTRSVSP
                     YRKDYISDDDSDEDSACYGAFIDQELVGKIELNSTWNDLASIEHIVVSHTHRGKGVAH
                     SLIEFAKKWALSRQLLGIRLETQTNNVPACNLYAKCGFTLGGIDLFTYKTRPQVSNET
                     AMYWYWFSGAQDDA"
     gene            5698..6486
                     /gene="aadA1"
                     /locus_tag="JN125_004408"
     CDS             5698..6486
                     /gene="aadA1"
                     /locus_tag="JN125_004408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014325834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANT(3'')-Ia family aminoglycoside
                     nucleotidyltransferase AadA1"
                     /protein_id="HAY8873892.1"
                     /translation="MREAVIAEVSTQLSEVVGVIERHLEPTLLAVHLYGSAVDGGLKP
                     HSDIDLLVTVTVRLDETTRRALINDLLETSASPGESEILRAVEVTIVVHDDIIPWRYP
                     AKRELQFGEWQRNDILAGIFEPATIDIDLAILLTKAREHSVALVGPAAEELFDPVPEQ
                     DLFEALNETLTLWNSPPDWAGDERNVVLTLSRIWYSAVTGKIAPKDVAADWAMERLPA
                     QYQPVILEARQAYLGQEDRLASRADQLEEFVHYVKGEITKVVGK"
     gene            6562..7059
                     /locus_tag="JN125_004409"
     CDS             6562..7059
                     /locus_tag="JN125_004409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001444089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873893.1"
                     /translation="MRDLLKVVLSLVLAMASGQALADLPIVLVDEARLPYDYSPSNYD
                     ISPSNYDNSISNYDNSPSNYDNSESNYDNSSSNYDNSRNGNRRLIYSANGSRTFAGYY
                     VIANNGTTNFFSTSGKRMFYTPKGGRGVYGGKDGSFCGALVVINGQFSLALTDNGLKI
                     MYLSN"
     gene            7120..7491
                     /locus_tag="JN125_004410"
     CDS             7120..7491
                     /locus_tag="JN125_004410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000119696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873894.1"
                     /translation="MSYEPPRDGYTNGYIVDVMYDNRPSKYPAVFRTYVRIPDYVELD
                     NAEELADAIIREVELKEAWLTRVLGNSADPDASVGKWDRRLAQCGGIDEMSSGVQATY
                     FSPNGQLVGLVAYIDAEWMDE"
     gene            7901..8278
                     /locus_tag="JN125_004411"
     CDS             7901..8278
                     /locus_tag="JN125_004411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001271300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873895.1"
                     /translation="MSAAKALAYALCDKLESKKVDEVVRNLVSSGWNIREVAWEASSF
                     DHEMPYFDTGRDFDIGFPDTLSSKIEFLTANGSIVQARARLHFKQALIFAKASKHVAA
                     LKNSLDYYYGSSVIPPQNHGGYL"
     gene            8301..8453
                     /locus_tag="JN125_004412"
                     /pseudo
     CDS             8301..8453
                     /locus_tag="JN125_004412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011069623.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
     gene            complement(8509..10125)
                     /locus_tag="JN125_004413"
     CDS             complement(8509..10125)
                     /locus_tag="JN125_004413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000251878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional antiterminator"
                     /protein_id="HAY8873896.1"
                     /translation="MVRLATFNDNVQVVHIGHLFRNSGHKEWRIFVWFNPMQERKWTR
                     FTHLPLLSRAKVVNSTTKQINKADRVIEFEASDLQRAKIIDFPNLSSFASVRNKDGAQ
                     SSFIYEAETPYSKTRYHIPQLELARSLFLINSYFCRSCLSSTALQQEFDVQYEVERDH
                     LEIRILPSSSFPKGALEQSAVVQLLVWLFSDQDVMDSYESIFRHYQQNREIKNGVESW
                     CFSFDPPPMQGWKLHVKGRSSNEDKDYLVEEIVGLEINAMLPSTTAISHASFQEKEAG
                     DGSTQHIAVSTESVVDDEHLQLDDEETANIDTDTRVIEAEPTWISFSRPSRIEKSRRA
                     RKSSQTILEKEEATTSENSNLVSTDEPHLGGVLAAADVGGKQDATNYNSIFANRFAAF
                     DELLSILKTKFACRVLFEETLVLPKVGRSRLHLCKDGSPRVIKAVGVQRNGSEFVLLE
                     VDASDGVKMLSTKVLSGVDSETWRNDFEKIRRGVVKSSLNWPNSLFDQLYGQDGHRGV
                     NHPKGLGELQVSREDMEGWAERVVREQFTH"
     gene            complement(10126..11652)
                     /locus_tag="JN125_004414"
     CDS             complement(10126..11652)
                     /locus_tag="JN125_004414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001243518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional antiterminator"
                     /protein_id="HAY8873897.1"
                     /translation="MRNFPVPYSNELIYSTIARAGVYQGIVSPKQLLDEVYGNRKVVA
                     TLGLPSHLGVIARHLHQTGRYAVQQLIYEHTLFPLYAPFVGKERRDEAIRLMEYQAQG
                     AVHLMLGVAASRVKSDNRFRYCPDCVALQLNRYGEAFWQRDWYLPALPYCPKHGALVF
                     FDRAVDDHRHQFWALGHTELLSDYPKDSLSQLTALAAYIAPLLDAPRAQELSPSLEQW
                     TLFYQRLAQDLGLTKSKHIRHDLVAERVRQTFSDEALEKLDLKLAENKDTCWLKSIFR
                     KHRKAFSYLQHSIVWQALLPKLTVIEALQQASALTEHSITTRPVSQSVQPNSEDLSVK
                     HKDWQQLVHKYQGIKAARQSLEGGVLYAWLYRHDRDWLVHWNQQHQQERLAPAPRVDW
                     NQRDRIAVRQLLRIIKRLDSSLDHPRATSSWLLKQTPNGTSLAKNLQKLPLVALCLKR
                     YSESVEDYQIRRISQAFIKLKQEDVELRRWRLLRSATLSKERITEEAQRFLEMVYGEE
                     "
     gene            complement(11655..13322)
                     /locus_tag="JN125_004415"
     CDS             complement(11655..13322)
                     /locus_tag="JN125_004415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001276994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HAY8873898.1"
                     /translation="MSATRIQAVYRDTGVEAYRDNPFIEALPPLQESVNSAASLKSSL
                     QLTSSDLQKSRVIRAHTICRIPDDYFQPLGTHLLLSERISVMIRGGYVGRNPKTGDLQ
                     KHLQNGYERVQTGELETFRFEEARSTAQSLLLIGCSGSGKTTSLHRILATYPQVIYHR
                     ELNVEQVVYLKIDCSHNGSLKEICLNFFRALDRALGSNYERRYGLKRHGIETMLALMS
                     QIANAHALGLLVIDEIQHLSRSRSGGSQEMLNFFVTMVNIIGVPVMLIGTPKAREIFE
                     ADLRSARRGAGFGAIFWDPIQQTQRGKPNQEWIAFTDNLWQLQLLQRKDALLSDEVRD
                     VWYELSQGVMDIVVKLFVLAQLRALALGNERITAGLLRQVYQDELKPVHPMLEALRSG
                     IPERIARYSDLVVPEIDKRLIQLQLDIAAIQEQTPEEKALQELDTEDQRHLYLMLKED
                     YDSSLLIPTIKKAFSQNPTMTRQKLLPLVLQWLMEGETVVSELEKPSKSKKVSAIKVV
                     KPSDWDSLPDTDLRYIYSQRQPEKTMHERLKGKGVIVDMASLFKQAG"
     gene            complement(13319..15427)
                     /locus_tag="JN125_004416"
     CDS             complement(13319..15427)
                     /locus_tag="JN125_004416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000267723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase family protein"
                     /protein_id="HAY8873899.1"
                     /translation="MWQINEVVLFDNDPYRILAIEDGQVVWMQISADKGVPQARAELL
                     LMQYLDEGRLVRTDDPYVHLDLEEPSVDSVSFQKREEDYRKILPIINSKDRFDPKVRS
                     ELVEHVVQEHKVTKATVYKLLRRYWQRGQTPNALIPDYKNSGAPGERRSATGTAKIGR
                     AREYGKGEGTKVTPEIERLFRLTIEKHLLNQKGTKTTVAYRRFVDLFAQYFPRIPQED
                     YPTLRQFRYFYDREYPKAQRLKSRVKAGVYKKDVRPLSSTATSQALGPGSRYEIDATI
                     ADIYLVDHHDRQKIIGRPTLYIVIDVFSRMITGFYIGFENPSYVVAMQAFVNACSDKT
                     AICAQHDIEISSSDWPCVGLPDVLLADRGELMSHQVEALVSSFNVRVESAPPRRGDAK
                     GIVESTFRTLQAEFKSFAPGIVEGSRIKSHGETDYRLDASLSVFEFTQIILRTILFRN
                     NHLVMDKYDRDADFPTDLPSIPVQLWQWGMQHRTGSLRAVEQEQLRVALLPRRKVSIS
                     SFGVNLWGLYYSGSEILREGWLQRSTDIARPQHLEAAYDPVLVDTIYLFPQVGSRVFW
                     RCNLTERSRQFKGLSFWEVWDIQAQEKHNKANAKQDELTKRRELEAFIQQTIQKANKL
                     TPSTTEPKSTRIKQIKTNKKEAVTSERKKRAEHLKPSSSGDEAKVIPFNAVEADDQED
                     YSLPTYVPELFQDPPEKDES"
     gene            complement(15414..16235)
                     /locus_tag="JN125_004417"
     CDS             complement(15414..16235)
                     /locus_tag="JN125_004417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001029679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heteromeric transposase endonuclease subunit
                     TnsA"
                     /protein_id="HAY8873900.1"
                     /translation="MAKANSSFSEVQIARRIKEGRGQGHGKDYIPWLTVQEVPSSGRS
                     HRIYSHKTGRVHHLLSDLELAVFLSLEWESSVLDIREQFPLLPSDTRQIAIDSGIKHP
                     VIRGVDQVMSTDFLVDCKDGPFEQFAIQVKPAAALQDERTLEKLELERRYWQQKQIPW
                     FIFTDKEINPVVKENIEWLYSVKTEEVSAELLAQLSPLAHILQEKGDENIINVCKQVD
                     IAYDLELGKTLSEIRALTANGFIKFNIYKSFRANKCADLCISQVVNMEELRYVAN"
     gene            complement(16395..18224)
                     /gene="glmS"
                     /locus_tag="JN125_004418"
     CDS             complement(16395..18224)
                     /gene="glmS"
                     /locus_tag="JN125_004418"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HAY8873901.1"
                     /translation="MCGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMT
                     RLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEANAHPHVSEHIMVVHNGII
                     ENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTV
                     IMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPVTRRFIFLEEGDIAEITRR
                     SVNIFDKTGAEVKRQDIESNLQYDAGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQ
                     VDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYR
                     KSAVRRNSLMITLSQSGETADTLAGLRLLKELGYLGSLAICNVPGSSLVRESDLALMT
                     NAGTEIGVASTKAFTTQLTVLLMLVAKLSRLKGLDASIEHDIVHGLQALPSRIEQMLS
                     QDKRIEALAEDFSDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPL
                     ALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVSSDNMHIIEMP
                     HVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRNLAKSVTVE"
     gene            complement(18386..19756)
                     /gene="glmU"
                     /locus_tag="JN125_004419"
     CDS             complement(18386..19756)
                     /gene="glmU"
                     /locus_tag="JN125_004419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HAY8873902.1"
                     /translation="MLNNAMSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAAN
                     ELGAAHVHLVYGHGGDLLKQALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILML
                     YGDVPLISVETLQRLRDAKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATD
                     EQRQIQEINTGILIANGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQ
                     RLSEVEGVNNRLQLSRLERVYQSEQAEKLLLAGVMLRDPARFYLRGTLTHGRDVEIDT
                     NVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDVNLAAACTIGPFARLRP
                     GAELLEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANK
                     FKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAISRVPQTQKEGWR
                     RPVKKK"
     gene            complement(20107..20526)
                     /gene="atpC"
                     /locus_tag="JN125_004420"
     CDS             complement(20107..20526)
                     /gene="atpC"
                     /locus_tag="JN125_004420"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001251972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HAY8873903.1"
                     /translation="MAMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLT
                     AIKPGMIRIVKQHGHEEFIYLSGGILEVQSGNVTVLADTAIRGQDLDEARAMEAKRKA
                     EEHISSSHGDVDYAQASAELAKAIAQLRVIELTKKAM"
     gene            complement(20547..21929)
                     /gene="atpD"
                     /locus_tag="JN125_004421"
     CDS             complement(20547..21929)
                     /gene="atpD"
                     /locus_tag="JN125_004421"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017800291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HAY8873904.1"
                     /translation="MATGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNERLVLEVQ
                     QQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLGEPVDMKGEI
                     GEEERWAIHRAAPSYEELSNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNM
                     MELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRL
                     RVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEM
                     GVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPA
                     VDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVA
                     RARKIQRFLSQPFFVAEVFTGSPGKYVSLKDTIRGFKGIMEGEYDHLPEQAFYMVGSI
                     EEAVEKAKKL"
     gene            complement(21956..22819)
                     /gene="atpG"
                     /locus_tag="JN125_004422"
     CDS             complement(21956..22819)
                     /gene="atpG"
                     /locus_tag="JN125_004422"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HAY8873905.1"
                     /translation="MAGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRP
                     YAETMRKVIGHLAHGNLEYKHPYLEDRDVKRVGYLVVSTDRGLCGGLNINLFKKLLAE
                     MKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQAY
                     DEGRLDKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLKHKSWDYLYEPDPKALLDT
                     LLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQE
                     LTEIVSGAAAV"
     gene            complement(22870..24411)
                     /gene="atpA"
                     /locus_tag="JN125_004423"
     CDS             complement(22870..24411)
                     /gene="atpA"
                     /locus_tag="JN125_004423"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001176751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HAY8873906.1"
                     /translation="MQLNSTEISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGL
                     ADCMQGEMISLPGNRYAIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRG
                     LLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIG
                     RGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGAL
                     ANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLL
                     LRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKNGSLTALPIIETQA
                     GDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGISVSRVGGAAQTKIMKKLSGG
                     IRTALAQYRELAAFSQFASDLDDATRKQLDHGQKVTELLKQKQYAPMSVAQQSLVLFA
                     AERGYLADVELSKIGSFEAALLAYVDRDHAPLMQEINQTGGYNDEIEGKLKGILDSFK
                     ATQSW"
     gene            complement(24424..24957)
                     /gene="atpH"
                     /locus_tag="JN125_004424"
     CDS             complement(24424..24957)
                     /gene="atpH"
                     /locus_tag="JN125_004424"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015966593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HAY8873907.1"
                     /translation="MSEFITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQM
                     AELLSGALAPETLAESFIAVCGEQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAV
                     SEATAEVDVISAAALSEQQLAKISAAMEKRLSRKVKLNCKIDKSVMAGVIIRAGDMVI
                     DGSVRGRLERLADVLQS"
     gene            complement(24972..25442)
                     /gene="atpF"
                     /locus_tag="JN125_004425"
     CDS             complement(24972..25442)
                     /gene="atpF"
                     /locus_tag="JN125_004425"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001052215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HAY8873908.1"
                     /translation="MNLNATILGQAIAFVLFVLFCMKYVWPPLMAAIEKRQKEIADGL
                     ASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIV
                     AQAQAEIEAERKRAREELRKQVAILAVAGAEKIIERSVDEAANSDIVDKLVAEL"
     gene            complement(25504..25743)
                     /gene="atpE"
                     /locus_tag="JN125_004426"
     CDS             complement(25504..25743)
                     /gene="atpE"
                     /locus_tag="JN125_004426"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004246596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HAY8873909.1"
                     /translation="MENLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPD
                     LIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAVA"
     gene            complement(25790..26605)
                     /gene="atpB"
                     /locus_tag="JN125_004427"
     CDS             complement(25790..26605)
                     /gene="atpB"
                     /locus_tag="JN125_004427"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005121454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HAY8873910.1"
                     /translation="MASENMTPQDYIGHHLNNLQLDLRTFSLVDPQNPPATFWTINID
                     SMFFSVVLGLLFLVLFRSVAKKATSGVPGKFQTAIELVIGFVNGSVKDMYHGKSKLIA
                     PLALTIFVWVFLMNLMDLLPIDLLPYIAEHVLGLPALRVVPSADVNVTLSMALGVFIL
                     ILFYSIKMKGIGGFTKELTLQPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYAG
                     ELIFILIAGLLPWWSQWILNVPWAIFHILIITLQAFIFMVLTIVYLSMASEEH"
     gene            complement(26614..26994)
                     /gene="atpI"
                     /locus_tag="JN125_004428"
     CDS             complement(26614..26994)
                     /gene="atpI"
                     /locus_tag="JN125_004428"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418195.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit I"
                     /protein_id="HAY8873911.1"
                     /translation="MSVSLVSRNVARKLLLVQLLVVIASGLLFSLKDPFWGVSAISGG
                     LAVFLPNVLFMIFAWRHQAHTPAKGRVAWTFAFGEAFKVLAMLVLLVVALAVLKAVFL
                     PLIVTWVLVLVVQILAPAVINNKG"
     gene            complement(27611..28234)
                     /gene="rsmG"
                     /locus_tag="JN125_004429"
     CDS             complement(27611..28234)
                     /gene="rsmG"
                     /locus_tag="JN125_004429"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HAY8873912.1"
                     /translation="MLNKLSLLLKDAGISLTDHQKNQLIAYVNMLHKWNKAYNLTSVR
                     DPNEMLVRHILDSIVVAPYLQGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRV
                     RFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFASLNDMVSWCHHLPGEQGR
                     FYALKGQMPEDEIALLPEEYQVESVVKLQVPALDGERHLVVIKANKI"
     gene            complement(28258..30147)
                     /gene="mnmG"
                     /locus_tag="JN125_004430"
     CDS             complement(28258..30147)
                     /gene="mnmG"
                     /locus_tag="JN125_004430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000499793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HAY8873913.1"
                     /translation="MFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQ
                     MSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRV
                     LYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD
                     GKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQ
                     HGGNPMPVFSFMGNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRY
                     CPSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENA
                     KIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAA
                     RLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTE
                     IGRELGLVDDERWARFNEKLENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREAS
                     GEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNE
                     NTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISGVTPAAISILLVWLKKQGM
                     LRRSA"
     gene            complement(30526..30969)
                     /gene="mioC"
                     /locus_tag="JN125_004431"
     CDS             complement(30526..30969)
                     /gene="mioC"
                     /locus_tag="JN125_004431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein MioC"
                     /protein_id="HAY8873914.1"
                     /translation="MADITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGPLLEDL
                     SASGIWLIISSTHGAGDIPDNLSPFYEALQEQKPDLSAVRFGAIGIGSREYDTFCGAI
                     DKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWINLLK"
     gene            complement(31059..31517)
                     /gene="asnC"
                     /locus_tag="JN125_004432"
     CDS             complement(31059..31517)
                     /gene="asnC"
                     /locus_tag="JN125_004432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator AsnC"
                     /protein_id="HAY8873915.1"
                     /translation="MENYLIDNLDRGILEALMGNARTAYAELAKQFGVSPGTIHVRVE
                     KMKQAGIITGARIDVSPKQLGYDVGCFIGIILKSAKDYPSALAKLESLDEVTEAYYTT
                     GHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTETLIVLQNPIMRTIKP"
     gene            31669..32661
                     /gene="asnA"
                     /locus_tag="JN125_004433"
     CDS             31669..32661
                     /gene="asnA"
                     /locus_tag="JN125_004433"
                     /EC_number="6.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--ammonia ligase"
                     /protein_id="HAY8873916.1"
                     /translation="MKTAYIAKQRQISFVKSHFSRQLEECLGLIEVQAPILSRVGDGT
                     QDNLSGCEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPD
                     EDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEAAVSEEFGLAPF
                     LPDQIHFVHSQELLSRYPDLDAKGRERAIAKDLGAVFLVGIGGKLSDGHRHDVRAPDY
                     DDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIRVDADTLKHQLALTGDEDRLQL
                     EWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQCGVWPAAVRESVPSLL"
     gene            complement(32666..34117)
                     /gene="viaA"
                     /locus_tag="JN125_004434"
     CDS             complement(32666..34117)
                     /gene="viaA"
                     /locus_tag="JN125_004434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_312714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase RavA stimulator ViaA"
                     /protein_id="HAY8873917.1"
                     /translation="MLTLDTLNVMLAVSEEGLIEEMIIALLASPQLAVFFEKFPRLKA
                     AITDDVPRWREALRSRLKDARVPPELTEEVMCYQQSQLLSTPQFIVQLPQILDLLHRL
                     NSPWAEQARQLVDANSTITSALHTLFLQRWRLSLIVQATTLNQQLLEEEREQLLSEVQ
                     ERMTLSGQLEPILADNNTAAGRLWDMSAGQLKRGDYQLIVKYGEFLNEQPELKRLAEQ
                     LGRSREAKSIPRNDAQMETFRTMVREPATVPEQVDGLQQSDDILRLLPPELATLGITE
                     LEYEFYRRLVEKQLLTYRLHGESWREKVIERPVVHKDYDEQPRGPFIVCVDASGSMGG
                     FNEQCAKAFCLALMRIALAENRRCYIMLFSTEIVRYELSGPQGIEQAIRFLSQQFRGG
                     TDLASCFRAIMERLQSREWFDADAVVISDFIAQRLPDDVTSKVKELQRVHQHRFHAVA
                     MSAHGKPGIMRIFDHIWRFDTGMRSRLLRRWRR"
     gene            complement(34111..35589)
                     /gene="ravA"
                     /locus_tag="JN125_004435"
     CDS             complement(34111..35589)
                     /gene="ravA"
                     /locus_tag="JN125_004435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001339853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase RavA"
                     /protein_id="HAY8873918.1"
                     /translation="MSGKNFPPEQFVGKGLYERSHAIRLCLLAALSGESVFLLGPPGI
                     AKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTSGYLPEA
                     EIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEA
                     LYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITL
                     PDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLILLKD
                     CLWYDAQSLNLIQQQIDVLMTGHAWQQQGMLTRLGAIVQRHLQLQQQQSDKTALTVIR
                     LGGIFSRRQQYQLPVNVTASTLTLLLQKPLKLHDMEVVHISFERSALEQWLSKGGEIR
                     GKLNGIGFAQKLNLEVDSTQHLVVRDVSLQGSTLALPGSSAEGLPGEIKQQLEELESD
                     WRKQHALFSEQQKCLFIPGDWLGRIEASLQDVGAQIRQAQQC"
BASE COUNT         9183 a         8948 c         8267 g         9333 t
ORIGIN      
        1 gtcagattct gaccagacgg ttcaggctgt acgcttacgt ccaatattca gtccattgcg
       61 cagattgaga taactggtat ctgtctcttg tgaaccataa tctgaacgta gtgtatgtga
      121 accagaaaaa tcgtagttga tggtgagcgc gttaatcccc tcatcccaac gcgtggggct
      181 gatgtaatca taagccatcg cgtccatgta gatttgggga atggatatat tcagctgcaa
      241 tttatcactg tcaaactgcc aggatgagcc ttcaatacgt ggagcaggat cgaggcaaac
      301 cgtctcatcc acatcattga acgatttgag cgcatcaact tttatgccaa aggaggacag
      361 tgttttttta atggcaataa agcaagcgtg cagatcagca tctggattat tctgaacaaa
      421 tgtcacatcc tgacgttcaa acattttacc gttgataaaa atatcaacgc tataaacacc
      481 tgggggcatc aggtttgccc gattaaactg gcgaatatcg actccggatt gatggtcgat
      541 ttccagaagc gccggattga atacactgac ctcggccatc aggttttgcg agaaaatcag
      601 acacgtccct gccgtgaggc caaccactat tctggtcgtc atcataatac gcctatcctt
      661 atcccttgct tacagcgtca tttttatcgg gtcactgact gcgccgtaat cattaataaa
      721 tcgccaggtc atttggcctc ccgcagaatt agcaggtaaa ggtaacgtga gcgtttcaaa
      781 aggacggatc atattgaggg gcacatcatg gccatcaacg atgacatcca tcacactgat
      841 atgaattggg ttgggattct ctgctatcag atttcgccct tcccggcgcc atttcacttt
      901 cggcgcagca tcttcgggaa taaggcggat atttgctggt cgccagaaca gcttgatacg
      961 cgtttttact gctatttcca gcgagttcgt cgctttgttg ctcgctgatg gcggaatatt
     1021 tttaatattc agccagaaga ctgactcgcg ataatcaggc aatgacacac ctttggtgtg
     1081 aataatgcgt aatatttttt cttgcgaagg ttctaatcgt gatactggcg gaataacggt
     1141 aaacggcgct ttgcttttat cctctttatt aaatggatct acccaagctt ggatgagata
     1201 aggtattttt tcttctttgc taaatacaga aatagattta tcagcattat tacttaagta
     1261 aaccccccgc gtaccaccaa tgacaacgcc tgcataagtt aatgctggtt ggcctaaaaa
     1321 aatgctgagt ataatcgcgg taaataactt acatgaaact gttgttttaa agagcctgat
     1381 taaacaactt tttctggaca taacgactcc ctggccaaag ccaactgaat aaaaaggccc
     1441 ttgataaatt atttcttata ttcgacagta aattgtgaat cagcgttcgc cgtaccagcc
     1501 gttacggtcg cattggttgc cacatagcgt gcaataaact tcatttcagc cttgccttca
     1561 gcatcgatag cggtataagc agagtcgtta taaagtttaa cctgcgaatt atcggactgg
     1621 ttaaaaatac gaataccaac gccggttgcc gcaatcgctt gtcctgtacc ggtaaaatca
     1681 ccagggttgc ctgctgtaag cggcgtaccc actttcaggt cgccgtcgcc gccaggcgct
     1741 tctgtaccat caaaacgaac ggctgcttga gtgtacgttg ccgggcaatt ttcaagttta
     1801 atactgaact tctgtggcga cgccagacta cctacacctg aaaatgcatt tttactgact
     1861 ttacccagtg ggacaatttg atcggctgta tcggaggtaa cttcacaagt agtgtcgaca
     1921 atttcaccga cgaagtgaac aacaccatct tctgccagtg catgcccggc cagcattaga
     1981 gatgccagag tgaatgcacc gcctataata ttacgcttca taaaaactcc attgatataa
     2041 tatatccttt accatgaatc atcacttata ttaataagtg tatttttgat tcaaaggaat
     2101 agtacaccaa agagacggct ttatctaaaa ataatattaa ttacgcaaaa ataaaatata
     2161 aatttattgt ttaaatatta tttaaacagt aaaaaatcaa gtttgttatc agacattaat
     2221 gataattcag aatatattta tatagaaaga tagatgaatt tattgatgtc agttataaaa
     2281 aagggccacc ggtcggcagc cctgtgggcg gacaaaatag ttgggaactg ggaggggtgg
     2341 aaatggagtt tttaaggatt atttagggaa gagtgacaaa atagatggga actgggtgta
     2401 gcgtcgtaag ctaatacgaa aattaaaaat gacaaaatag tttggaacta gatttcactt
     2461 atctggttaa ctaatctagc taacctgccg ctcagcttag tacgatccta tatccaactg
     2521 atcataatcc tttcatcagt atcccaaatt aaatccccct cctagactgc ctcaccaaca
     2581 ctttacagtg atcccgtatt tccggacagg tgattgattt ttttcgcttg tacaggtgtt
     2641 aagccacagt tatcttgatg tggacattat gcattgtaat agcccattaa catgcgctaa
     2701 gagcataaat taatatacag taacaagcat tacgaggtgc taatgtttgg aaagcagcct
     2761 cttccaacta caataataag ttaactatcc tccacccaca aataattaca aatgacccct
     2821 ttccgctata actccgatct caccagcggc tcgctacaaa cccgagagtg tcgcattatt
     2881 actggcttgt tactccaaga gcttgatgaa gctgcctggg ataaagccat gtataaggaa
     2941 aatgtgcttc agaaacgcac gcaatctacg gtaagacgta tttcttcagc gcttagaaaa
     3001 cgcctagaac acctaagctc tgacttttgg gcttttgcgt ttttatgtta ggcattgtct
     3061 ggcaactgga ggaagtgtaa tgaccatgaa tggtcactgt gattgacagt atcttgctta
     3121 aacttatctg aacaatggta gaactggctc atatttatcc cctctatgat tgtttatctt
     3181 tttcaccata aaaagtatca ggggctactc agggctacat aaagatattt atctactttt
     3241 actgattgat aagtagcatc agtccatccg caggactggt ggtgccggca aaatgctgac
     3301 ccaacacatg cgtatagatt tgcgtggtct taacatcgtt atgccctaag agttcttgca
     3361 cagtgcgaat atcacgcccc gcttgtaata gatgcgtagc aaacgagtga cgaaatgtat
     3421 gacaagtgac acgcttgcta acgatgcctg ctttttgtac ggctgccttc aatgcctttc
     3481 gcgcaacgga gtcatgcaga tgatggcggc ataatttgcc gttatacggg tggttgcaga
     3541 gcgtgctgga gggaaagaca aacatccacg ccgcttgtcg ataagcagaa gggtatttgt
     3601 gatctaaagc aaaaggcagc gatggcccta cgccttgtaa gttgtcgtct tgctgaataa
     3661 gccgcgcttg ctcaatgagt tattttattg ctgggattag gcgcgtgggc agtaggctgt
     3721 ttctgctttt cccaccctta ccgtcatgca cagtgatgca gccattatca aaatcaaaat
     3781 ctttaacccg caaacgcaag cattcattaa tgcgcaaacc tgcaccatac agcagcgtaa
     3841 aaataacttg gttgcgagta tccataacct gcaaaatgcg ttgcacttca tttgcagaga
     3901 taacagaggg tagccgtcta ggcttgcttg cagggatata atcaatatcg cccaacggct
     3961 gttgtaaaaa cctgttgtac aaaaaagcta gggcatttaa agcgattttc tgcgtgttta
     4021 tggctacatg tctgctgttt gctaagctgg ataaaaacag cctgacctct tcactgccca
     4081 tggtctgagg atgacgtttt ttgtgaaaca gaataaaacg cttaatccag tgcaggtaag
     4141 ttttttcagt tttcagcgca taaccttttt gtcgcatatc cgtgcgtata gaatttaaaa
     4201 atggactgtt agacataaaa cgctccttgt cttgcaactg tctgcctata cagcctattc
     4261 tagctgggat ttaaaaaagt gcctgttttt tacgcctaga gatgcttgtt taccggtaga
     4321 gttttaattt aatgctaaat aaattaaaat gttatgagtt ctttgggtga gataatgtgc
     4381 atcgtgcaag caggatagac ggcatgcacg atttgtaata acagagtgtc ttgtattttt
     4441 aaagaaagtc tatttaatac aagtgattat attaattaac ggtaagcatc agcgggtgac
     4501 aaaacgagca tgcttactaa taaaatgtta acctctgagg aagaattgtg aaactatcac
     4561 taatggtagc tatatcgaag aatggagtta tcgggaatgg ccctgatatt ccatggagtg
     4621 ccaaaggtga acagctcctg tttaaagcta ttacctataa ccaatggctg ttggttggac
     4681 gcaagacttt tgaatcaatg ggagcattac ccaaccgaaa gtatgcggtc gtaacacgtt
     4741 caagttttac atctgacaat gagaacgtat tgatctttcc atcaattaaa gatgctttaa
     4801 ccaacctaaa gaaaataacg gatcatgtca ttgtttcagg tggtggggag atatacaaaa
     4861 gcctgatcga tcaagtagat acactacata tatctacaat agacatcgag ccggaaggtg
     4921 atgtttactt tcctgaaatc cccagcaatt ttaggccagt ttttacccaa gacttcgcct
     4981 ctaacataaa ttatagttac caaatctggc aaaagggtta acaagtggca gcaacggatt
     5041 cgcaaacctg tcacgccttt tgtaccaaaa gccgcgccag gtttgcgatc cgctgtgcca
     5101 ggcgttaggc gtcatatgaa gatttcggtg atccctgagc aggtggcgga aacattggat
     5161 gctgagaacc atttcattgt tcgtgaagtg ttcgatgtgc acctatccga ccaaggcttt
     5221 gaactatcta ccagaagtgt gagcccctac cggaaggatt acatctcgga tgatgactct
     5281 gatgaagact ctgcttgcta tggcgcattc atcgaccaag agcttgtcgg gaagattgaa
     5341 ctcaactcaa catggaacga tctagcctct atcgaacaca ttgttgtgtc gcacacgcac
     5401 cgaggcaaag gagtcgcgca cagtctcatc gaatttgcga aaaagtgggc actaagcaga
     5461 cagctccttg gcatacgatt agagacacaa acgaacaatg tacctgcctg caatttgtac
     5521 gcaaaatgtg gctttactct cggcggcatt gacctgttca cgtataaaac tagacctcaa
     5581 gtctcgaacg aaacagcgat gtactggtac tggttctcgg gagcacagga tgacgcctaa
     5641 caattcattc aagccgacac cgcttcgcgg cgcggcttaa ttcaggagtt aaacatcatg
     5701 agggaagcgg tgatcgccga agtatcgact caactatcag aggtagttgg cgtcatcgag
     5761 cgccatctcg aaccgacgtt gctggccgta catttgtacg gctccgcagt ggatggcggc
     5821 ctgaagccac acagtgatat tgatttgctg gttacggtga ccgtaaggct tgatgaaaca
     5881 acgcggcgag ctttgatcaa cgaccttttg gaaacttcgg cttcccctgg agagagcgag
     5941 attctccgcg ctgtagaagt caccattgtt gtgcacgacg acatcattcc gtggcgttat
     6001 ccagctaagc gcgaactgca atttggagaa tggcagcgca atgacattct tgcaggtatc
     6061 ttcgagccag ccacgatcga cattgatctg gctatcttgc tgacaaaagc aagagaacat
     6121 agcgttgcct tggtaggtcc agcggcggag gaactctttg atccggttcc tgaacaggat
     6181 ctatttgagg cgctaaatga aaccttaacg ctatggaact cgccgcccga ctgggctggc
     6241 gatgagcgaa atgtagtgct tacgttgtcc cgcatttggt acagcgcagt aaccggcaaa
     6301 atcgcgccga aggatgtcgc tgccgactgg gcaatggagc gcctgccggc ccagtatcag
     6361 cccgtcatac ttgaagctag gcaggcttat cttggacaag aagatcgctt ggcctcgcgc
     6421 gcagatcagt tggaagaatt tgttcactac gtgaaaggcg agatcaccaa ggtagtcggc
     6481 aaataatgtc taacaattcg ttcaagccga cgccgcttcg cggcgcggct taactcaagc
     6541 gttagagagc tggggaagac tatgcgcgat ctgttgaagg tggttctaag cctcgtactt
     6601 gcgatggcat cggggcaggc acttgctgac ctgccaattg ttttagtgga tgaagctcgt
     6661 cttccctatg actactcccc atccaactac gacatttctc caagcaacta cgacaactcc
     6721 ataagcaatt acgacaatag tccatcaaat tacgacaact ctgagagcaa ctacgataat
     6781 agttcatcca attacgacaa tagtcgcaac ggaaatcgta ggcttatata tagcgcaaat
     6841 gggtctcgca ctttcgccgg ctactacgtc attgccaaca atgggacaac gaacttcttt
     6901 tccacatctg gcaaaaggat gttctacacc ccaaaagggg ggcgcggcgt ctatggcggc
     6961 aaagatggga gcttctgcgg ggcattggtc gtcataaatg gccaattttc gcttgccctg
     7021 acagataacg gcctgaagat catgtatcta agcaactagc ctgctctcta ataaaatgtt
     7081 aggcctcaac atctagtcgc aagctgaggg gaaccactag tgtcatacga acctccaaga
     7141 gacggttaca caaacgggta cattgttgat gtcatgtatg acaatcgccc aagtaagtat
     7201 ccagctgtgt tcagaacgta cgtccgaatt ccagactatg tcgaactaga taacgcggag
     7261 gagctggccg acgcaatcat tcgagaggtt gagttaaagg aggcatggct cacaagggtc
     7321 ttggggaact cagccgatcc tgacgcttct gtgggcaagt gggaccggcg cctagcgcag
     7381 tgcggtggta ttgatgagat gtcaagtggg gtgcaggcaa catacttcag tccaaacggt
     7441 cagctggtcg gcttagtggc atacattgat gccgaatgga tggatgaata gctctgacgt
     7501 tacgattcag gtgagacaac cagatgggca ttgcgtacaa gctcagttgc caccgatgtg
     7561 gctacgagtc tgatcttctt tacctaggcc aaggtatggc gatgcttcct gagcaaatag
     7621 tcggaacgtg cacatgctgc gacaatctaa cgacgatttc tataaatgaa agctacggag
     7681 tatgctcact ttgtggggct aaggatcgtg tgatatttac aagctatcag catgaggcaa
     7741 ggccaagaaa tccctgctat ctagagagaa gtttcaaata tcaatgccca agatgccatg
     7801 ccttcagtat ggagcctccg gatctaccgg agatgctttg ggactaatgc tccgctttgc
     7861 ctcgggtatc cgttcgacct atgtttaaga ggaaacgcac gtgtctgccg ccaaagctct
     7921 tgcctatgca ctttgtgaca agttggaaag caaaaaagtt gatgaagtcg tacgaaatct
     7981 tgtttctagc ggctggaata ttagggaagt ggcctgggaa gcttcgtcct ttgatcatga
     8041 aatgccctac tttgacacgg ggcgggactt cgatattgga tttcctgaca cgctgtcatc
     8101 caagattgag tttttgaccg cgaatggatc aatcgtccaa gcacgtgctc gcctgcactt
     8161 caagcaggct ctaatttttg ccaaggcgtc caaacatgtc gccgcgctca agaactcatt
     8221 ggattactac tatggatcgt ctgtaatccc ccctcaaaac cacggaggct atttgtagaa
     8281 aattccatta atatgaactc aaggtgttcc ctacggacga atcagcgatg aaggtggtgt
     8341 acctggctat ccaggcggcg accaagaaat ggacgatgcc gatccgcaac tggaagccgg
     8401 ccatgaaccg ttttatgatc gaatttggtg accgtttaaa tggccacctt taactgaccg
     8461 gcaaaagcac ttacacaaaa gggtttacag gctctttcag tcattccttt aatgcgtaaa
     8521 ttgctctcta accactctct cagcccaccc ttccatatcc tctctcgata cttgcagctc
     8581 ccccaacccc tttggatgat tcacccctct atgcccgtct tgtccatata attgatcaaa
     8641 caaactattt ggccaattca atgagctctt caccactcca cgccgtatct tttcaaaatc
     8701 attccgccat gtttcgctat caacgccact caacactttg gtagaaagca ttttcacccc
     8761 atccgatgca tccacctcta gcaatacaaa ttcactgcca ttacgttgca ccccaacggc
     8821 tttaatcact cttggtgagc catctttaca cagatgtaat cggctacgcc caacttttgg
     8881 caaaaccaag gtttcttcaa aaagcacccg acatgcaaat ttagttttta gaattgaaag
     8941 tagctcatca aaagcagcaa atcgattagc aaaaatagag ttgtaattgg ttgcatcctg
     9001 cttcccaccc acatctgccg ctgctaggac accacctaag tgtggctcat cagtactaac
     9061 caaattacta ttttcacttg ttgttgcttc ttctttttct aaaatagttt ggctactttt
     9121 tcttgccctg cgagattttt caattcgact aggtctacta aaacttatcc atgtcggctc
     9181 agcctctatg actcgtgtgt ctgtgtctat attggctgtt tcctcatcgt ccaactgtag
     9241 atgctcatca tcaacaactg actctgttga aaccgctatg tgctgcgtac taccatcacc
     9301 tgcctccttt tcctgaaaag aggcatggct aatagctgtt gtgctaggaa gcatagcgtt
     9361 gatttctaaa cctactattt cctcaactaa ataatcctta tcctcgttag aagaacgtcc
     9421 ttttacatgt aatttccaac cctgcatggg cggagggtca aagctaaagc accagctttc
     9481 aacgccgttc ttaatttctc tattttgttg atagtgccta aaaatacttt catacgaatc
     9541 cataacatct tgatccgaaa acaaccaaac caaaagctgc actacggccg actgctctaa
     9601 cgccccttta ggaaacgatg aactgggtaa gatccttatc tctaaatgat ctcgctcaac
     9661 ctcatactga acgtcgaact cttgctgtaa agcggtactg ctcaaacagc ttcgacagaa
     9721 ataggagtta attaaaaata atgaccgagc tagctctaac tgtgggatgt gataacgagt
     9781 cttgctatat ggtgtttcag cttcgtaaat aaatgaactc tgcgctccat ccttgttgcg
     9841 tacggaagca aaggacgaga gattaggaaa atcgattatt ttggctcgtt gaagatccga
     9901 tgcttcaaac tcaatcacac gatccgcctt atttatttgc tttgttgtac tgttaaccac
     9961 cttagctcga cttaataaag gcaaatgagt aaatcgagtc catttccgtt cttgcattgg
    10021 attaaaccaa acaaaaatac gccactcctt atgacccgag ttacggaata aatgaccaat
    10081 atgtacaacc tgcacattgt cattaaatgt agctagccta accactcact cttccccata
    10141 aaccatttcc aagaatcttt gtgcttcctc agttatccgc tctttagata acgttgcact
    10201 tcttaataat cgccagcgcc taagctcaac atcttcctgt ttaagcttaa taaaagcttg
    10261 gctaatccgt ctaatttgat aatcttccac actctctgag taacgcttta agcaaagcgc
    10321 taccaaaggc agtttctgta gattttttgc aagagaggtt ccgttaggag tttgctttaa
    10381 cagccagctc gatgtcgctc ttgggtgatc aaggctacta tctagacgct ttatgattct
    10441 taatagttgt cgtacagcaa ttcgatctct ttggttccaa tcaactctag gggcgggtgc
    10501 cagacgctct tgttgatgct gttgattcca gtgaactagc caatccctgt catgtcggta
    10561 aagccaagcg tatagcaccc caccctctaa agactgtctt gccgccttaa ttccttggta
    10621 tttatgcact agttgctgcc agtctttatg cttaacagat aaatcttcag agttaggttg
    10681 cacagactgg ctaacaggtc ttgtcgttat agagtgctca gtaagagcac ttgcctgctg
    10741 tagcgcttct ataaccgtta gttttggcaa taaggcttgc cacacaatac tatgctgtaa
    10801 ataactaaag gcttttctat gcttacggaa tatacttttc agccaacacg tgtccttgtt
    10861 ctctgccaac tttaaatcca gtttctctag tgcctcatca ctaaaagtct gcctcactct
    10921 ctccgccacc aagtcatgac gaatgtgctt gcttttggtt agccctagat cctgcgctaa
    10981 gcgctgataa aacagcgtcc actgctcaag gcttggggaa agctcttgcg ctcgtggagc
    11041 atctaacaga ggggctatat aagcagctag tgctgttaat tgagataggg agtctttggg
    11101 gtagtctgaa agcagctcag tatgacccaa agcccaaaat tgatgtcggt gatcatctac
    11161 agctctatca aagaagacta aagcaccgtg ttttggacaa tatggcaaag cgggcaaata
    11221 ccaatctcgt tgccaaaagg cttccccata cctatttagc tgaagagcaa cgcaatcagg
    11281 gcagtatcta aagcggttat cgctcttaac tctagaagca gcgactccta gcattaaatg
    11341 caccgcacct tgcgcttggt actccattaa ccgaatagct tcgtctcggc gctccttgcc
    11401 tacaaacgga gcatataaag ggaataaggt atgctcataa ataagctgct gaacagcgta
    11461 acgtcctgtt tgatgtagat gtcttgctat cacacctaaa tgcgagggca gacctaaggt
    11521 agcgaccacc ttgcggttgc catacacctc atccaacagc tgcttaggac taacaatccc
    11581 ttgataaacg cctgcccgtg caatagtgct ataaatcagc tcattcgagt acggaacagg
    11641 aaagtttctc atggctaacc tgcttgttta aataagctcg ccatatccac tattacccct
    11701 ttccctttta accgttcatg catggttttt tcaggttggc gttgtgaata gatataacgt
    11761 aaatccgtat caggcaagct atcccagtcg ctgggcttga ctacctttat agccgaaacc
    11821 tttttactct tggagggctt ttctagttct gacactaccg tttcgccttc catcaaccac
    11881 tgcaaaacaa gaggcagtaa cttttgtctt gtcatcgttg gattctggct aaacgctttt
    11941 ttaatagtgg gaattaacag gcttgaatcg taatcctctt tcagcatcag atataaatga
    12001 cgctgatctt cggtatctaa ctcttgaagg gctttttctt ctggtgtttg ttcttgtatc
    12061 gctgcgatat ctagctgaag ttggattaac cgtttatcaa tctcgggaac gactagatca
    12121 gaataacgag caatgcgttc tgggataccc gagcgtaatg cctctagcat ggggtgcaca
    12181 ggctttaact catcttgata cacttgccgc aataaaccag cggtaatacg ctcattgcct
    12241 aaagctagcg cacggagctg agcgagtaca aaaagtttta ctacaatgtc catcactcct
    12301 tggcttagct cataccacac atcacggacc tcatccgata acagcgcatc tttgcgttgt
    12361 aaaagctgta attgccaaag attatccgta aaagcgatcc actcttgatt gggctttcca
    12421 cgttgcgttt gttgtatagg atcccagaat atagctccaa accctgcccc tctacgtgca
    12481 gaccgcaaat cagcctcaaa aatctctcgt gctttagggg taccaatcaa catcactggt
    12541 acgccaataa tattcaccat cgtcacaaaa aagttcagca tctcttgaga tccacccgaa
    12601 cgagagcggc ttaaatgctg aatttcatca ataaccaaca accctaaagc atgtgcattg
    12661 gctatttgcg acatcaaagc caacatggtt tctataccat gacgttttaa gccataacga
    12721 cgctcatagt tcgagcccaa ggctcgatcc aacgctctga aaaaattcaa gcagatttct
    12781 tttagcgaac cattatgcga gcagtctatt ttcaaataca ccacctgctc tacattgagt
    12841 tcacgatggt aaatcacctg aggatacgtg gctagaatac gatgaagaga ggtcgtcttc
    12901 ccactaccag aacaaccaat taacaataag ctttgtgccg tagatcgtgc ctcctcaaag
    12961 cgaaatgtct ccaactctcc cgtttgaaca cgctcataac cattttgtaa atgcttttgt
    13021 aaatctcctg ttttaggatt tctgcctacg tagccacctc gaatcatgac cgaaatacgc
    13081 tcacttagta gcaaatgcgt acctaatggc tgaaaatagt catctggaat acgacaaatg
    13141 gtatgagctc tgataacacg ggacttttgc aagtcagagg aagtaagctg taaagaggat
    13201 ttcagtgatg cagcactatt cactgactct tgtaatggtg gtaaggcctc gataaaagga
    13261 ttatcacgat aagcctctac ccccgtatca cgataaactg cttgaatccg ggtagcactc
    13321 atgactcatc cttttctggt ggatcctgaa ataattcagg cacgtatgtg ggtaggctgt
    13381 aatcttcttg atcatccgct tccactgcgt tgaaaggaat aactttagcc tcatcacctg
    13441 aagagcttgg cttcaaatgc tccgcacgtt ttttacgctc cgaggtcacg gcttcttttt
    13501 tattagtttt aatctgctta atgcgtgttg atttgggctc agtagtactg ggcgttaact
    13561 tattcgcttt ctgaatggtt tgctgaataa acgcctcaag ctccctgcgt ttagttaact
    13621 catcctgctt cgcattggct ttattgtgtt tttcttgtgc ttgtatatcc caaacctccc
    13681 aaaatgagag acctttaaac tgccgactac gttccgtcag attacagcgc caaaatacac
    13741 ggctgccaac ttgcggaaac aaataaatcg tatcaaccag cactgggtca taagccgctt
    13801 ctaaatgttg aggtctagct atatcagtgc tccgctgcaa ccaaccctca cgcagaatct
    13861 ctgaccccga gtaatacaaa ccccacaaat taacgccaaa tgaagaaata gagacctttc
    13921 ggcgaggcag taacgctact cgcaactgct cttgctccac agcccttaaa ctacctgtac
    13981 gatgctgcat accccattgc catagctgga caggaataga cggtaaatct gtaggaaaat
    14041 cagcatctcg atcgtattta tccatcacca gatggttatt tctgaataag atcgtacgca
    14101 aaataatttg tgtgaactca aataccgaca gagatgcatc taacctatag tctgtttcac
    14161 catggctttt gatccgactg ccctctacaa tgccaggtgc aaaggactta aactcggctt
    14221 gtagtgttct aaaagtgctt tccactatgc ctttagcatc gccacgtcta ggtggagcac
    14281 tttccactcg cacattaaaa ctagaaacta aggcttcgac ctgatgactc attaattcgc
    14341 cacggtccgc tagcaacaca tctggcaaac ctacacacgg ccagtctgag ctactaatct
    14401 caatatcatg ctgggcacaa atggccgttt tgtcagagca agcatttaca aaagcctgca
    14461 tcgccaccac ataagacgga ttttcaaagc cgatataaaa gcccgtgatc atccgactaa
    14521 acacatcaat cacaatgtaa agcgttggtc ttcctatgat tttttggcga tcatgatgat
    14581 ccactaaata aatatcagca atcgtggcat caatctcata acgactccca gggcctaacg
    14641 cctgagaagt ggctgtacta cttaagggtc gtacgtcttt tttatatacc cctgctttaa
    14701 ctctagactt taagcgctga gctttagggt attctcgatc ataaaaataa cgaaactgac
    14761 gtagtgttgg gtaatcctct tggggaatgc gaggaaaata ctgagcaaac aagtccacaa
    14821 atcgtctata ggcaacggtg gtctttgtac ctttttgatt taacaggtgc ttttctatgg
    14881 tcaacctaaa aaggcgttca atctcgggcg ttaccttggt tccttcaccc ttaccatatt
    14941 ctctggctcg gccaatcttt gctgttcctg tcgctgaacg tctttcccct ggtgcaccgc
    15001 tgtttttgta gtcaggaatt aatgcattag gcgtttgacc acgctgccag taacggcgta
    15061 acaacttata aactgtagcc ttagtaacct tatgttcttg gaccacatgc tcaacgagtt
    15121 cgcttctgac tttagggtcg aaacgatcct tactattaat aataggaaga atttttcgat
    15181 aatcctcctc gcgcttctgg aagctgacag aatctacaga cggctcttct aaatcaagat
    15241 gtacataagg gtcatcagtt ctaactaagc ggccttcatc taaatactgc attagcaaca
    15301 actcagccct agcttgtgga actcctttat cagcgcttat ttgcatccag acaacttggc
    15361 catcctctat agccaaaatg cgatacggat cattatcaaa tagcacaacc tcattaattt
    15421 gccacatagc gcaactcctc catattcact acttggctaa tacagagatc tgcacactta
    15481 tttgccctga aagacttata aatattgaac ttaataaaac catttgcggt taaggctcgt
    15541 atctcactca atgttttgcc taactccaaa tcataagcaa tatcaacctg cttacagaca
    15601 ttgataatgt tttcatctcc tttttcttgc aggatatggg ccaatgggga tagttgtgct
    15661 aaaagctccg cagaaacttc ttctgttttc actgaataaa gccattcaat attttctttt
    15721 actacgggat ttatttcttt atcagtaaaa atgaaccaag gaatttgctt ttgctgccaa
    15781 tagcgacgct ctagttctag tttttctaag gtacgctcgt cttgtaaggc tgctgcaggt
    15841 ttgacttgaa tagcaaactg ctcaaaagga ccatctttgc agtccactaa aaaatcagta
    15901 gacataacct gatctacacc acgaataaca ggatgcttaa taccactatc tattgcaatc
    15961 tgcctggtat cactaggtaa taaggggaac tgctcgcgta tatctagcac gctgctctcc
    16021 cactcaagac tgagaaaaac agcaagctct aagtcagata gcaaatgatg gactcgtccc
    16081 gtcttatgag aataaatacg gtgggaacga cctgaagaag gaacttcttg tactgttagc
    16141 catggaatat agtctttacc atgcccttgg ccacgcccct ctttaatacg acgggcaatt
    16201 tgcacttcag aaaatgaaga gtttgcttta gccataacaa aagtccagta tgctttttca
    16261 cagcataact ggactgattt cagtttacaa ctattctgtc tagtttaaga ctttattgtc
    16321 atagtttaga tctattttgt tcagtttaag actttattgt ccgcccacaa gccctttttt
    16381 atctatgata gtgattactc aaccgtaacc gattttgcca agttacgcgg ctggtcaacg
    16441 tcggtgcctt tgatcagcgc gacatggtaa gccagcagct gcagcggaac ggtgtagaag
    16501 atcggtgcaa tcacctcttc cacatgcggc atctcgatga tgtgcatgtt atcgctactt
    16561 acaaaacccg catcctgatc ggcgaagaca tacaactgac cgccacgcgc gcgaacttct
    16621 tcaatgttgg atttcagttt ttccaacagt tcgttgttcg gtgcaacgac gataaccggc
    16681 atatccgcgt caatcagcgc cagcgggccg tgtttcagct cgccagcagc gtaggcttca
    16741 gcgtgaatgt aggagatctc tttcagcttc aatgcgcctt ccagtgcgat tgggtactga
    16801 tcgccacggc ccaggaacag tgcgtgatgt ttgtcagaga aatcttctgc cagagcttca
    16861 atgcgtttgt cctgagatag catctgctca atacggctcg gcagcgcctg cagaccatgc
    16921 acaatgtcat gttcaatgga ggcatccaga cctttcaggc gagacagctt cgccaccagc
    16981 atcaacagca cagttaactg agtggtgaat gctttagtgg acgccacgcc gatttccgta
    17041 cccgcgttgg tcatcagcgc cagatcggat tcgcgcacca gagaagaacc cggaacgtta
    17101 cagattgcca gcgaaccaag gtaacccagc tctttcaaca gacgcaggcc cgccagggta
    17161 tccgcggttt cgccagactg tgacaaggtg atcatcaggc tgttacgacg cacggcagat
    17221 ttacgatagc ggaattcaga ggcgatttcg acgtcgcacg gaatacctgc cagcgattca
    17281 aaccagtagc gggaaaccat accggagtta taagaagtac cacaggcgag gatctgaata
    17341 tgctcaacct tcgacagcag ttcgtcggcg ttcggtccca gctcgcttaa atcaacctga
    17401 ccgtggctga tgcgcccggt aagggtgttt ttgatcgcgt tcggctgttc gtagatctct
    17461 ttctgcatgt agtgacggta aataccttta tcgcccgcgt catattgcag attggattcg
    17521 atatcctgac gttttacttc cgcgccagtt ttatcgaaga tgtttaccga acggcgagta
    17581 atttccgcaa tatcgccctc ttcaaggaag ataaagcgac gggtcaccgg cagcagcgcc
    17641 agctggtcag aagcgataaa gttttcgccc atacccaggc caatcaccag cggactacca
    17701 gaacgtgccg ccagcagggt atccgggtga cgggagtcca tgatcactgt accgtacgca
    17761 ccgcgcagct gcgggatagc acgcagaaca gcctcacgca gagtcccgcc ttgtttcagc
    17821 tcccagttca ccagatgggc aatcacttcg gtgtcggttt cagaaacgaa ggtatagcca
    17881 cgcgctttta actcttcacg cagcggttca tggttttcga tgatgccgtt atgcaccacc
    17941 ataatgtgtt cagaaacatg cggatgcgcg ttagcttctg aaggttcacc gtgggtcgcc
    18001 cagcgagtgt gagcaatacc ggtgccgcca tgcagaggat gttcttccgc tgcctgagcc
    18061 agcatctgga ctttaccgag gcgacgcagg cgggtcatat gaccttccgc atcaacaacg
    18121 gccagaccgg cagagtcata tccgcggtat tccagacgac gtaaaccttc aagaaggatt
    18181 tctgctacat cacgttgcgc gatcgcgcca acaattccac acatagtttt tgattccgat
    18241 ttatatcgtt gtcggtcaac ctgtatgccc gttttttcgg gcgccccgag ccttgtagag
    18301 agtggggtta tttttatagt tactgcttgt gggagggaga ttatgttatc tcctcatccc
    18361 agatgaccgg attacccggc cagaattact ttttctttac cggacgacgc cagccttctt
    18421 tctgagtctg cggcacacgg ctgatagcta atgcattttc gccgacatta cgcgtcacag
    18481 ttgtacccgc agcaatggtc gcgcctttgc ctactgttac cggggccacc agctgagtgt
    18541 cggaaccgac aaacacatcg tcgccgataa tggtcttaaa tttattcgca ccatcgtagt
    18601 tgcaggtaat ggttcccgcg ccgatgttaa cgttatcgcc aatttccgca tcgcccaggt
    18661 aagtcagatg accagctttc gagcctttac ccagacgcgc ttttttcatc tcaacaaagt
    18721 taccgacgtg tgcaccttcc agcaactcag caccaggacg cagacgggca aacgggccaa
    18781 tagtacaggc cgctgccaga ttcacgtctt ccacaacggt atacggactg atttcgcaat
    18841 catcgccaat cacgctgttt ttaatcacgc aaccggtgcc gattttcacg cgatgaccga
    18901 gagtcacgtt gccctcgatg ataacgttag tatcaatttc aacatcgcgc ccgtgagtaa
    18961 gcgtaccgcg cagataaaaa cgcgccggat cgcgcagcat aacgcctgct aacagcagtt
    19021 tttcagcctg ttcggactgg taaacgcgct ccagacggga gagttgcagg cggttattca
    19081 caccttctac ttcgcttaaa cgttgcggat gaacggcgac gatttcacgc ccttcctgat
    19141 acgccagcgc aataatgtcg gtgatgtagt attcgccctg agcattattg ttggtcagct
    19201 tcgccagcca gcgtttcata tctgcgccgt tagcgatcag aatgccggtg ttgatctcct
    19261 gaatctgacg ctgctcgtcg gtggcatctt tgtgctcaac aatgccggta actttgccat
    19321 tttcacgggt gatacgtcca taaccggtcg gatcatccag tttcaccgtc agcagaccaa
    19381 tgccaccctg cggtttagca tcacgcaggc gctggagtgt ttcgacagag atcagcggca
    19441 cgtcgccgta gagcattaaa atgtcttcat catcggcaaa gaaaggtgcg gcctgctgca
    19501 ttgcatgacc cgtacccagc tgctctgcct gaagcaccca gttaaggttg tcgtctttca
    19561 gcgcctgttt aagcagatcg ccgccgtgac cgtacaccag gtgaacgtgc gctgcgccta
    19621 attcattcgc agcatcaatg acatgctgaa ccatcgcttt cccggcaagg gtatgcagca
    19681 ctttcggaag atcggaatac atgcgcgtgc ctttgcctgc ggcaaggatc actacgctca
    19741 tagcattatt caacatacgc gtcctgactg taatttgaga acgaatttaa accgcttcac
    19801 cttgaaaaaa ctacattttt ttcatcgtga aatggacaga ggataaattg ttcaataacg
    19861 gattatcccc gctgacgaaa gtgccatttt cgaccatcgt cacgcctttt gtctgcagaa
    19921 aattaaggca gtaccttcat ttaagcgtca ggtggatgtt tttgctctta tttcgatcaa
    19981 tgaataaacg ggaaaacagg ggtgttttat atcagcagga tctatgtgaa cgctcttcag
    20041 gacggatcac gcgtaaaaaa aaaccagcct gtttccagac tggcttttgt gcttttcaag
    20101 ccggtgttac atcgcttttt tggtcaactc gataacgcgc agctgcgcga tcgctttggc
    20161 cagttccgca gacgcctgag cgtaatctac gtcgccgtga gagctgctaa tgtgctcttc
    20221 agccttacgt ttcgcttcca tggctcgcgc ttcgtcgaga tcctggccgc gaattgcggt
    20281 gtcggccaga acggtcacgt tgccagactg cacttcaaga atgccgccag acagatagat
    20341 aaactcttcg tgaccgtgct gtttcacgat gcgaatcata ccaggcttaa tggcggtgag
    20401 cagcggtgcg tggccagggt agatccccag ttcaccttcg ctacccgtta cctggatttt
    20461 ctcgaccaga ccagagaaca tttgttgctc tgcgctgacg acgtccaggt ggtaagtcat
    20521 tgccatatca ccctccgatt aaggcgttaa agttttttgg ctttttccac agcttcttcg
    20581 atggaaccga ccatgtagaa cgcctgctcc ggcaggtgat cgtattcgcc ttccatgatg
    20641 cctttaaagc cacggatggt gtctttcagg gagacgtatt tacccggaga accggtgaat
    20701 acttctgcca cgaagaacgg ctgggacagg aagcgctgga tcttacgagc acgcgctacc
    20761 accagtttgt cttcttcaga cagttcatcc atacccagga tggcgatgat gtctttcagt
    20821 tcctgataac gttgcaggat ggactgaacg ccacgcgcgg tgtcgtagtg ttcctgacca
    20881 accaccagcg ggtccagctg acggctggtg gagtccagcg ggtcaacggc cgggtagata
    20941 cccagagacg cgatctgacg gctcagtacc acggttgcgt caaggtgcgc aaaggtggtt
    21001 gccggagacg ggtcagtcaa gtcatccgca ggtacgtata ccgcctgtac ggaggtgata
    21061 gaaccagttt tggtggaggt gatacgttcc tgcagaacgc ccatctcttc cgccagggtc
    21121 ggctgataac ctaccgctga aggcatacgg cccagcagtg cggatacttc cgtaccggcc
    21181 agggtgtaac gatagatgtt gtcaacgaac agcagaacgt cacgaccttc gtcacggaat
    21241 ttctcagcca tggtcagacc ggtcagagca acgcgcagac ggtttcccgg cggctcgttc
    21301 atctggccat acaccaggga tactttgtcg ataacgttgg agtcggtcat ttcgtggtag
    21361 aagtcgttac cctcacgagt acgttcacct acgcccgcaa acacagagta accggagtgc
    21421 tcgatcgcga tgttacgaat gagctccatc atgtttacgg ttttacctac acccgcacca
    21481 ccgaacagac caactttacc gcccttagcg aacggacaca tcaggtcgat aactttgata
    21541 ccggtttcca gcagttcctg agagtttgac agctcttcgt aggaaggtgc tgcgcggtga
    21601 atcgcccaac gctcttcttc accgatctcg cctttcatgt cgaccggttc acccagtacg
    21661 ttcatgatac ggcccagagt cgctttacct accgggactt cgatcgggtg ttcgaggtct
    21721 tttacatcca gaccgcgacg cagaccgtcg gaggaaccca ttgcgatggt acgcacgata
    21781 ccgccgccga gctgctgctg aacttccagc accagacgct cattaccatt ttgcacctca
    21841 agagcatcgt acacgcgcgg tacggcatcc tgagggaatt cgacgtcaac tacggcgccg
    21901 attacctgga caatctttcc agtagccatc ttaaatcctc tacgaaataa cctgtttaaa
    21961 ccgcggcggc ccccgagacg atctcggtga gttcctgagt aatgctggcc tgacgagctt
    22021 tgttgtatac caactgcagc tctttaatca ggctgccgcc attgtcggtc gcggctttca
    22081 tcgccaccat acgggcggcc tgctcgctgg ccaggttttc aaccacgccc tgataaacct
    22141 gagattcgac ataacgacgc agcagggtat ccagcaacgc cttcggatcg ggttcgtaca
    22201 ggtaatccca ggatttatgt ttcagatcat catcatctga tgccggtaac ggcagcagct
    22261 ggctgatggt cggaacctga gacatggtgt taataaattt gttgctgaca atgtaaagct
    22321 tgtccagacg gccttcgtcg taggcctgca acatcacttt taccggaccg atcagttcgg
    22381 acagggaagg gttatccccc atgccggtga cctgggcaac aacattgccg cccacggagt
    22441 tgaagaacga cacgcctttc gagccgatca ttgcgagatc gcattgaacg cctttgtcgg
    22501 tccaggtctt catttccgcc agcagttttt tgaacaggtt aatgttcaaa ccaccgcaca
    22561 aaccacggtc ggtcgacacc accaggtagc ccacgcgttt aacgtcgcgg tcttccaggt
    22621 aagggtgctt atattccaga ttaccatgtg caaggtgacc aatcactttg cgcatggttt
    22681 ctgcataagg acggctggcc gccatgcgat cctgcgattt acgcattttg gaagcggcga
    22741 ccatctccat cgctttagtg atcttttgcg tgttctggac gcttgcgatc ttactacgta
    22801 tctcttttgc gccggccatg agcttctcct caatgccttg cggcctgccc taaggcaagc
    22861 cgccagacgt taccaggatt gggttgcttt gaaggaatcg aggatgcctt tcagtttgcc
    22921 ttcgatttcg tcgttgtagc caccggtctg gttgatctct tgcatcaacg gagcgtgatc
    22981 acggtcgacg taagccagca gagcggcttc gaagctgcca attttcgaca gttcaacatc
    23041 cgccaggtaa ccacgttctg ctgcgaacag aaccagagac tgctgcgcaa cggacatcgg
    23101 cgcatactgt ttctgtttca gcagttcggt cactttctga ccgtggtcaa gctgcttacg
    23161 tgttgcatcg tcaaggtcgg atgcaaactg agagaacgct gccagttcac gatactgtgc
    23221 cagagcggta cggataccac cggacagttt tttcatgatc ttggtctgtg ctgcaccacc
    23281 aacacgggat acggaaatac ccgggttaac cgcaggacga ataccggcgt tgaacaggtt
    23341 ggtttccagg aagatctgac catcggtaat ggagattacg ttggtcggaa cgaacgcaga
    23401 aacgtcaccc gcctgagttt cgataatcgg cagtgcggtc agagaaccgt ttttcccttt
    23461 cacttcacct ttggtgaagg cttcaacgta ttcggcgtta acacgtgcag cacgctccag
    23521 cagacgagag tggaggtaga aaacgtcgcc cgggaatgct tcacgtcctg gcggacgacg
    23581 gagcagcagg gagatctgac ggtaagcaac agcctgttta gacaggtcat cgtaaatgat
    23641 cagcgcatct tcaccgcggt cacggaagta ttcgcccatt gcgcaaccgg catacggtgc
    23701 caggtattgc agtgcagcgg attcagacgc ggttgctacc acaacgatgg tgttagccag
    23761 tgcgccgtgc tcttccagtt tacgtaccac gttagaaatg gtggacgctt tctggccgat
    23821 agcgacatag atacatttga taccggaatc gcgctggttg atgatggcat cgatagccag
    23881 tgcggtttta cctgtctgac ggtcaccgat gatcaattca cgctgaccac gaccgattgg
    23941 gatcatggag tcaacggctt tataaccggt ctgtaccggc tgatctacgg actgacgttc
    24001 gataacgccc ggagcgattg cttctacagc agagaagccg tcgtgatcca gcggaccttt
    24061 accgtcgatt ggtgcaccca gagtgttaac cacacggccc agcaggccac ggccaaccgg
    24121 aacttccagg atacggccag tacacttaac tttcatgcct tcggcaaggt cagcgtacgg
    24181 acccataaca accgcaccta cagagtcgcg ctcgaggttc agtgcgatag cgtaacggtt
    24241 acccggcagg gagatcattt caccctgcat acaatcggcc aggccgtgaa tgcggataac
    24301 accgtcactt acagaaacaa tagtaccttc gttgtgagct tcactcacaa cattgaactg
    24361 agcaatgcgc tgcttgatca gttcgctgat ttcggtggaa ttcagttgca tgctccagtc
    24421 cccttaagac tgcaagacgt ctgcaaggcg ctcaagacga ccgcgtacgc tgccgtcaat
    24481 gaccatatca cccgctcgga tgataacgcc tgccattaca gacttatcga ttttgcaatt
    24541 cagcttaact ttgcgtgaca gacgtttttc catcgcagca gaaattttcg cgagctgttg
    24601 ttcactcagt gcggcagcgg aaatgacgtc tacctcagcg gtagcctcac tcacggcacg
    24661 aaggtgaata aactgctcca gaacatccgg gagcgcgtta agacgaccat tttcagccat
    24721 tacccgaatc aggttctgac cgttttcgtc cagttgctca ccacaaactg cgataaacga
    24781 ctcggcgagc gtttctggcg caagcgcgcc agagagaagc tctgccattt gttcgttttt
    24841 ggttacctcg gcggcaaacg ccagcatgtc ctgccagcgt tctacacttt ggtgttcgac
    24901 ggcaaagtca aaagctgctt tggcgtaggg gcgagctacc gtaataaatt cagacatcag
    24961 cccctccctc cttacagttc agcgacaagt ttatccacga tgtcgctgtt agcagcttca
    25021 tccacggaac gttcgatgat cttctcggcg ccagcaacag ccaggatagc aacttgctta
    25081 cgcagctctt cacgggcacg tttacgctcg gcttcaattt ctgcctgcgc ctgggccacg
    25141 attttagtac gttcctgttc tgcctcagct ttcgcttcgt ccagaatctg cgagcggcgt
    25201 ttgttcgcct gctcgatgat tacctgggct tccgctttcg cttttttcag ctggtcggtc
    25261 gcgctggcct ttgcaaggtc aaggtcctta tgtgctcgtt ctgcggaagc aaggccgtca
    25321 gcaatttctt tttgacgttt ttcgatggct gccattaatg gcggccatac gtacttcatg
    25381 cagaacagaa cgaacaggac aaacgcgatg gcctggccga ggattgttgc gttaagattc
    25441 acagcacaat gcctctattt agttaacgtt ctgatattgc tctttaaata aaagcaacgc
    25501 ttactacgcg acagcgaaca tcacgtacag acccagacct acagcgatca tcgggatagc
    25561 atccaccaga cccataacga taaagaactg agtacgcagc agaggaatca gatcaggttg
    25621 acgcgctgcg ccttccaaga atttaccccc gaggatgccg ataccgatcg cagcaccgat
    25681 tgccgccaga cccatcatca cagcggcagc catgtacagc agatccatat tcaggttttc
    25741 catgacagtc tccagtttgt ttcagttaaa acgtagtagt gttggtaaat taatgttctt
    25801 cagacgccat cgacagatag acgatcgtca gaaccatgaa gatgaaggct tgcagcgtaa
    25861 tgatcaggat gtggaaaatg gcccacggca cattcaggat ccactgtgac caccacggca
    25921 acagaccagc aatcagaatg aaaatcagct caccggcata catgttaccg aacagtcgca
    25981 aaccgagtga aactggtttg gacagcaggc ttaccccttc aaggattaag ttgacaggaa
    26041 tgaacgccca gtgattgaac ggctgcagcg tcaactcttt cgtgaagccg ccgatgcctt
    26101 tcattttgat gctgtagaac agaatcagga taaatacgcc caatgccata gacagcgtta
    26161 cgttcacgtc cgcagacgga accacacgca gtgcaggcag acccagtaca tgttcagcaa
    26221 tgtacggcag caggtcgata ggcagtaaat ccatcaggtt catcaggaat acccagacga
    26281 agatcgtcag ggccagcgga gcaatcagct tgcttttgcc atggtacatg tctttcacgc
    26341 taccattaac aaagccgatc accagctcaa tcgcggtctg aaacttacct ggcacaccgc
    26401 tggtcgcctt tttggctacg ctacggaata aaaccaggaa caacagaccc agcaccaccg
    26461 agaagaacat ggagtcaata ttgattgtcc agaaggtggc tggggggttt tgtggatcca
    26521 ccagcgagaa tgtacgcagg tccagctgaa ggttattcag gtggtgtcct atgtaatcct
    26581 gcggcgtcat attttctgaa gccatgatgc cttttaccct ttgttgttaa ttacagccgg
    26641 tgccagtatc tgaaccacca gcaccaaaac ccacgtaacg atcagcggca agaataccgc
    26701 ctttaaaacc gccaacgcca ccaccagtaa caccaacatc gccagaactt tgaaagcttc
    26761 gccaaatgcg aatgtccagg ccacccggcc tttcgctggt gtatgcgcct ggtgacgcca
    26821 ggcaaatatc ataaacaaaa cgttaggcag aaagactgcc aggcccccgc ttattgcaga
    26881 gacgccccag aaggggtctt tgaggctgaa cagcaatcca cttgctatca ccaccagtaa
    26941 ctgaacgagc agaagcttcc gagcaacgtt tcgactcacg agcgacacag acatcacgtt
    27001 tttcactcct gctcccttcg aggtatgccg cgtgtcgtat aaaactttct ttaaggctta
    27061 gagtcaagca tcaaaaagcg gtcaaattat acggcgcgcc cccgtgattt caaacaataa
    27121 gtagccaaaa ggtgaataaa tgtttaaata tttttccagt gcatacaatt gcgacttttc
    27181 tgctaaccct gttcgatcat gaaaaactgt aaataacgcg taaacactgg tgataaagcg
    27241 tgcttcagat cacatattgc gcatgttcgc gcacagcata tttatttact tggcaaatga
    27301 tgcctttgca agtttatgat atttcagtct aaaaacagat actgttttaa taaatgacat
    27361 ttacacaaca aaaaccaccc attgacattt ttaataatgt tttagcagcc aatgatggtt
    27421 cttagcgccg atttttagca gactgatatt ttcactaatg acttattttc tgcttaccaa
    27481 aaaaagccac gttatcttgt tgatgcaaaa gagtgaacgt ggcgttaaat gtaaccagtt
    27541 atatcagtag aaaacctggt tgttgttaac agtctaaccg gtcaattttt tatgattttt
    27601 ttgataaaaa ttaaatttta tttgctttaa tcaccaccag atgacgttcg ccatccaggg
    27661 ctggaacctg aagtttaacc actgattcga cctgatattc ttcgggcaac aaagcgattt
    27721 catcttccgg catttgccct ttcagcgcgt agaaacggcc ttgctcacca ggaagatggt
    27781 ggcaccagct caccatatcg ttcagagagg caaaagcgcg gctaattacg ccatcaaatg
    27841 gcggctctga aggaaactct tctaccctgc tctgtactgg ttcaatattc tccagtttaa
    27901 gctcatgttg cacctgacga aggaaacgca cgcgtttacc aaggctatcc aacagagtga
    27961 aatgggcttc aggacgcacg atagagagtg gaatgcctgg cagtcctggt ccggtgccga
    28021 catcgataaa ccgttcacct tgcagatacg gtgccaccac aatgctatcg agaatatggc
    28081 gtaccagcat ctcattagga tcgcggaccg aagtcaggtt gtacgctttg ttccatttat
    28141 gcagcatatt cacgtaggca ataagctggt ttttctggtg atcggtaagc gaaatacctg
    28201 cgtctttcag cagtaaggag agtttgttga gcacggtgat tacctgttct tgatgcgtta
    28261 tgcgctacga cgcagcatac cctgtttttt cagccacacc agcagaatgg agatggccgc
    28321 aggcgtgacg ccagaaatac gcgaagcttg gccgatagag gctggtttgt gatcgttaag
    28381 tttggcgatc acttcgttag aaagaccgga tacctggcgg taatccagtg tcgcgggtag
    28441 cagggtgttc tcgttacgca gctgcttttc gatctcatct tgctggcgcg cgatataacc
    28501 ttcgtattta acctgaatct caacctgttc cgccgcctgt tcgtctgtca acgcaggggc
    28561 aaacggcgtc agcgtggtta atttttcata agtcatttcc ggacgacgca gcagatcttc
    28621 accactggct tcacgggaaa gcggcgcagt caggtgagca ttcacttcgg ctgcagcttc
    28681 cgccgacggg gttacccagg tcgatttcag acgctgacgc tcacgctcga tattctcaag
    28741 tttctcgtta aagcgcgccc aacgttcgtc atccaccagg cccagttcac gaccgatttc
    28801 agtcaaacgc aaatccgcat tatcttcgcg tagcatcaga cgatattctg cgcgcgaagt
    28861 aaacatacga tacggttctt tggttcctaa agtgcacagg tcatcaacta gtacgccgag
    28921 atacgcctga gaacgtgccg gagcccaacc ttctttgtca gcagacagac gggcagcgtt
    28981 aagaccggcc agcaaacctt gcgcagcggc ttcttcgtaa ccggtagtgc cgttaatctg
    29041 accagcaaag aacagcccct ggataaactt gctctccagc gtcggtttca ggtcgcgagg
    29101 atcgaagaag tcatactcaa tggcataacc cggacgcacg atcttcgcgt tttccatccc
    29161 ctgcatagag cggacgattt gcatctgcac atcgaacggc aggctggtgg agataccgtt
    29221 cggataaatt tcattagagg tcagtccttc cggttcaagg aagatctgat gctgatttct
    29281 gtcggcgaag cgcatgactt tgtcttcgat cgacgggcag tagcgtgggc cgacaccttc
    29341 gatcacccct gcatacattg ggctacgatc gaggttactg cggatcacat catgggtttt
    29401 ctcgttggta tgagtgatat aacacggcac ctgctgggga tgctgggacg cattgcccat
    29461 aaacgagaat accggcattg ggttaccgcc atgctgttgc gccagcacac taaagtcgat
    29521 agttcgagca tcaatacgcg gtggtgtccc ggttttcaga cgaccaacgc gcagcggcag
    29581 ttcacgcaaa cggcgagaaa gcggaatgga cggcggatca ccagcacggc caccgctgta
    29641 attatccaga ccgatatgaa ttttaccgtc gaggaacgtc ccaacggtga gcacgacggc
    29701 tttggcacgg aacttcagtc ccatttgggt aacagcaccg accactcgat cgttttcgac
    29761 aataagatct tcaaccgcct gctggaagat catcaggttc ggttggttct ccagcgccgt
    29821 acgtaccgcc tgacggtaga gcacacgatc cgcctgagct cgggtagcgc gaaccgccgg
    29881 tcctttgctt gcgtttagta tcctaaactg gatacccgct tgatcgatcg ctttcgccat
    29941 cagaccgccg agtgcatcca cttcttttac cagatgtccc ttcccaatac cgccgatcgc
    30001 cgggttgcag ctcatctgcc ccagagtgtc gatattgtgt gtcaaaagca gagtctgttg
    30061 acccatacgc gccgcggcca tcgcggcctc ggtgcctgca tgacccccgc caatgatgat
    30121 gacgtcaaaa ggatccggat aaaacatggt gattgcctcg cataacgcgg tatgaaaatg
    30181 gattgaagcc cgggccgtgg attctactca actttgtcgg cttgagaaag acctgggatc
    30241 ctgggtatta aaaagaagat ctatttattt agagatctgt tctattgtga tctcttatta
    30301 ggatcgcact gccctgtgga taacaaggat ccggctttta agatcaacaa cctggaaagg
    30361 atcattaact gtgaatgatc ggtgatcctg gaccgtataa gctgggatca gaatgagggg
    30421 ttatacacaa ctcaaaaact gaacaaccgt tgttccttgg ataactaccg gttgatccaa
    30481 gcttcctgac agagttatcc acagtagatc gcacgatctg tatacttatt tgagtaaatt
    30541 aatccacgat cccagccatt cttctgccgg atcttccgga atgtcgtgat caagaatgtt
    30601 gatcttcagt gtttcgcctg tctgttttgc accggaattt ttgagttctg cctcgagttt
    30661 atcgatagcc ccacaaaagg tgtcatattc acgactacca ataccgattg cgccaaagcg
    30721 gaccgcagaa agatcgggct tctgttcctg caatgcttca tagaaaggag aaaggttgtc
    30781 cggaatatct ccggcaccgt gggtggagct gataatcagc cagatccccg aggcagataa
    30841 atcttccaac agcggaccgt gcagcgtttc ggtggtaaaa cccgcctctt ccagcttttc
    30901 agccaagtgt tctgctacat attcggcacc gccgagggtg ctgccgctga taagagtgat
    30961 atctgccata aaccgccacc tttattaaga gtggcgtatt gtacgctgtg aacgcgttgg
    31021 gatctacctg tggaaaagta tgggattaaa aaagccgatc agggcttgat agtacgcatg
    31081 atcgggtttt gcaggacgat caatgtctcg gtggactgaa tttcatcaat tgtttggatc
    31141 ttgttgataa gtacatgctg gagagcgtcg atcgaacggc acattacttt tataaagatg
    31201 ctgtagtggc ctgttgtgta ataggcttca gtgacttcat caaggctttc cagctttgcc
    31261 agcgcggaag ggtagtcttt ggcgctcttt aatataatgc cgataaagca gcctacgtca
    31321 taaccgagct gcttcgggct gacatcaata cgcgccccgg taatgatccc cgcctgcttc
    31381 attttctcta cccgaacgtg aatcgtcccc ggactgacgc caaattgttt cgccagttcg
    31441 gcgtaagcgg tgcgcgcatt gcccattaat gcttccagga ttccacggtc cagattgtcg
    31501 atcagataat tttccatagg attttcttat gcagattgat gattcattct attttagcct
    31561 tcttttttaa tgaatcaaaa gtgtgttagg ctttttattg aatgattatt gcatgtgtgt
    31621 cggtttttgt tgcttaatca taagcaacag gacgcaggag tataaaaaat gaaaaccgct
    31681 tacattgcca aacaacgcca aattagcttc gtgaaatctc acttttctcg tcaactggaa
    31741 gaatgtctgg ggctgatcga agtccaggca ccgattctta gccgtgtggg ggatggcacg
    31801 caggataact tgtcgggctg tgaaaaagcg gtgcaggtaa aagtgaaagc tctgcctgat
    31861 gcccagttcg aagtggttca ttcactggcg aagtggaaac gtcagacctt agggcaacac
    31921 gacttcagcg cgggcgaagg gctgtacacg cacatgaaag cccttcgccc cgatgaagac
    31981 cgtctttctc cgttgcactc ggtctatgta gaccagtggg actgggaacg cgtaatgggc
    32041 gacggtgagc gtcaattctc gactctgaaa agcacggtag aggcgatctg ggcgggaatt
    32101 aaagcaaccg aagctgcggt tagcgaagag tttggcctgg caccgttcct gccggatcag
    32161 atccacttcg tacacagcca ggagttactg tctcgttatc cggatctcga tgccaaaggg
    32221 cgtgagcggg cgatagcgaa agatcttggc gcggtattcc ttgtcgggat tggcggcaag
    32281 ctgagcgatg gtcatcgcca cgacgtgcgc gcaccggatt atgatgactg gagcaccccg
    32341 tcagagctgg gtcatgcggg tctgaacggc gatattctgg tgtggaaccc tgtactggaa
    32401 gatgcgtttg agctttcttc catggggatc cgcgtggatg ccgacacgct gaagcatcag
    32461 ctggcgctga ccggtgatga agatcgtctg cagctggaat ggcatcaggc gctgctgcgc
    32521 ggtgaaatgc cgcagaccat cggcggcggt atcggccagt ctcgtttgac tatgctgctg
    32581 ctgcaactgc cgcatatcgg ccaggttcag tgtggagtat ggccagctgc tgttcgcgag
    32641 agcgtccctt ctctgctgta ataatttatc gccgccagcg tctgagcagg cggcttcgca
    32701 tcccggtatc aaagcgccag atatgatcga aaatgcgcat gatgccgggt ttgccgtgtg
    32761 ccgacatcgc cacggcatga aagcgatgct gatgtacccg ctgcagctct ttcactttac
    32821 tcgtcacgtc gtcaggcaac cgctgagcga taaaatcaga aatcaccacc gcatcggcat
    32881 caaaccattc cctgctttgc aagcgttcca taatggcgcg aaaacaactg gcaagatcgg
    32941 tgccgccacg aaactgctgg cttaaaaaac ggattgcttg ttcgatgcct tgtgggcctg
    33001 aaagctcata acggacgatc tcggtggaaa atagcataat atagcagcgc cggttttctg
    33061 cgagagcaat gcgcatcaag gccaggcaga acgctttcgc acactgttca ttaaagccgc
    33121 ccattgagcc ggaagcatcc acacagacaa taaacggccc gcgcggctgt tcatcgtaat
    33181 ctttatgtac caccggacgt tcgatcactt tttcacgcca cgactcaccg tgcaggcgat
    33241 aggtgagcaa ctgtttttcc accagccgac ggtaaaactc atactccagt tccgttatcc
    33301 ctagtgtcgc cagttctggc ggcaggagac gtaaaatatc atcgctttgt tgcagaccat
    33361 caacttgctc aggaaccgtc gccggttcgc gcaccatggt gcggaaggtt tccatctgcg
    33421 catcgttgcg cggtattgat ttggcttccc gagaacgccc cagctgctct gccaggcgtt
    33481 tcagttccgg ctgttcgtta agaaattcac cgtatttcac aatcaactga tagtcgccac
    33541 gtttaagctg gccggcgctc atatcccaca gacgaccagc tgcggtattg ttatctgcga
    33601 gaatcggttc aagttgtccg ctcagcgtca tgcgttcctg aacttcactt aacagttgtt
    33661 cgcgttcttc ttctaatagc tgttgattta acgtcgttgc ttgcacgatc agacttaaac
    33721 gccagcgctg gagaaaaagc gtgtgtaacg ctgaagttat tgtgctgtta gcatcaacca
    33781 actgccgggc ttgttctgcc catggggaat tcagacgatg cagtaagtcc aggatctgtg
    33841 gtagctgcac aataaactgc ggcgtggaga ggagctggct ttgctgatag cacatcacct
    33901 cttcggtgag ttctggcggg actcgggcat ctttcagccg actgcgcagc gcctcacgcc
    33961 agcggggaac atcatcagtg attgctgcct tcagtcgtgg gaatttttca aagaagaccg
    34021 ccagctgcgg tgaggccagc agtgcgatga tcatctcttc gatcaatccc tcttcgctga
    34081 cggccagcat cacattaagc gtatccagcg ttagcattgt tgtgcctggc gaatctgtgc
    34141 accgacatcc tgtaggctgg cttcaatgcg acctaaccag tcgccaggga taaacagaca
    34201 tttttgctgt tcactgaata aagcgtgttg cttacgccag tcgctttcaa gctcttccag
    34261 ttgttgtttt atttcacctg gcagaccttc agccgatgaa ccgggaagtg ccagcgtact
    34321 gccttgtaaa cttacatcgc gtacaacaag atgttgggtg ctatcaactt ccagattcag
    34381 tttctgggca aagccgatac cgttcagttt gccgcgaatt tcaccacctt tactcagcca
    34441 ctgttccagc gcgctacgct caaaggagat atgaaccact tccatatcat gcagttttaa
    34501 cggtttttgc agcagcagag tcagagtgga agcagtaacg ttaacaggga gttgatactg
    34561 ctgacgacgg ctaaaaatgc cgcccagacg aattaccgtt aaggctgttt tatcgctttg
    34621 ttgctgctga agttgcaggt gacgttgcac aatcgcgccc aggcgggtca acatcccttg
    34681 ctgttgccag gcgtgaccgg tcatcaatac atcaatttgt tgttgtatca aattcaggct
    34741 ttgcgcgtca taccacaggc aatctttcag caaaatgaga tctaccgggg caacagcact
    34801 gcgaccgcta aaaaaggcgc tggcctgcaa taatcggatc gcttttttcc agcgacgatc
    34861 cgagacataa ggcgcatccg gtaatttatc cagttgctgg cgcagcataa aaatcagctc
    34921 aaatacatga tcgggcagcg taatttcacc aatctctttc tgccagcgtt catattcttc
    34981 atctgtgacc tgcaaggcat caggaaccgg attgtcgttt tcatcctgtt gactggtcag
    35041 catggagcgg aaattcgctt tatcctgcac tttatctaac cacagacgaa tcagcatgcg
    35101 gtcatataac gcttccagac tgctgtctgc ttccggcagc tcgttggagg ccgccaccag
    35161 cagacgcatc gggatttttt ctacgtgtgc accgttgcgg aactggcgct cgttaatggc
    35221 ggtgagcaag gtattaagaa ttgccgggcc cgctttccag atctcatcca gaaagacaat
    35281 ttctgcttcc ggcaggtaac cgctggttaa acgttcatag cgcccttcat cttttagcgc
    35341 ctgaatagaa aggggaccaa aaacttcttc cggcgtggag aagcgggtca tcagatattc
    35401 aaacgcgcgg gcattctgaa aggcgaattt taagcgccgg gcgatcaaac ttttggcaat
    35461 acctggcggg ccaaggagga acacactttc accacttaat gccgctaata aacacaagcg
    35521 gatggcgtgg ctacgttcat aaagcccttt tccaacgaac tgctcaggcg ggaaattctt
    35581 tccgctaata aatgagggtg agccataatg aagtggcgtc ctttcgtcaa aagttctgcg
    35641 taaattgcga gtatagacgt ttcttgctgg tggctaaaat agtctcaaag gggggtaatg
    35701 ccagtcagtt aagcaactga ctggctcttt t
//
LOCUS       DADMHM010000475        10785 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.guided.136, whole genome shotgun sequence.
ACCESSION   DADMHM010000475 DADMHM010000000
VERSION     DADMHM010000475.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 10785)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10785)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10785
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.guided.136"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(16..200)
                     /locus_tag="JN125_004436"
                     /pseudo
     CDS             complement(16..200)
                     /locus_tag="JN125_004436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014334100.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
     gene            complement(419..1396)
                     /gene="epmA"
                     /locus_tag="JN125_004437"
     CDS             complement(419..1396)
                     /gene="epmA"
                     /locus_tag="JN125_004437"
                     /EC_number="6.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000004771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P--(R)-beta-lysine ligase"
                     /protein_id="HAY8873919.1"
                     /translation="MSETASWQPSASIPNLLKRAAIMAEIRRFFADRGVLEVETPCMS
                     QATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNE
                     EMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCPAAESLSYQQAFLRYLEID
                     PLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPAS
                     QASLAQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQ
                     HPIDQNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVDRA"
     gene            1721..3529
                     /gene="frdA"
                     /locus_tag="JN125_004438"
     CDS             1721..3529
                     /gene="frdA"
                     /locus_tag="JN125_004438"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase (quinol) flavoprotein
                     subunit"
                     /protein_id="HAY8873920.1"
                     /translation="MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS
                     HTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGC
                     PWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLD
                     ILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAL
                     SHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLG
                     EPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICE
                     LAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRL
                     GSNSLAELVVFGRLAGEQATERAATAGNGNEEAIEAQAAGVEQRLKDLVNQDGGENWA
                     KIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIE
                     LGHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEY
                     SDVKITTLPPAKRVYGGEADAADKAEAANKKEKANG"
     gene            3522..4256
                     /locus_tag="JN125_004439"
     CDS             3522..4256
                     /locus_tag="JN125_004439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020882957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HAY8873921.1"
                     /translation="MAEMKNLKIEVVRYNPEVDTAPHSAFYEVPYDATTSLLDALGYI
                     KDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERD
                     LVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACP
                     QFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKH
                     VDPAAAIQQGKVESSKDFLIATLKPR"
     gene            4267..4662
                     /gene="frdC"
                     /locus_tag="JN125_004440"
     CDS             4267..4662
                     /gene="frdC"
                     /locus_tag="JN125_004440"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdC"
                     /protein_id="HAY8873922.1"
                     /translation="MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELI
                     FGLFALKNGPEAWAGFVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDE
                     KMGPEPIIKSLWAVTVVATIVILFVALYW"
     gene            4673..5032
                     /gene="frdD"
                     /locus_tag="JN125_004441"
     CDS             4673..5032
                     /gene="frdD"
                     /locus_tag="JN125_004441"
                     /EC_number="1.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase subunit FrdD"
                     /protein_id="HAY8873923.1"
                     /translation="MINPNPKHSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGL
                     FPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFY
                     GLAAILTVVTLIGIVTI"
     gene            5095..6228
                     /gene="blaEC"
                     /locus_tag="JN125_004442"
     CDS             5095..6228
                     /gene="blaEC"
                     /locus_tag="JN125_004442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001336292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BlaEC family class C beta-lactamase"
                     /protein_id="HAY8873924.1"
                     /translation="MFKTTLCALLITASCSTFAAPQQINDIVHRTITPLIEQQKIPGM
                     AVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLS
                     DPATKYWPELTAKQWNGITLLHLATYTAGGLPLQMPDEVKSSSDLLRFYQNWQPAWAP
                     GTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVFQPLKLNHTWINVPPAEEKNYAWG
                     YREGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLTPLDINEKTLQQGIQLAQSRYW
                     QIGDMYQGLGWEMLDWPVNPDSIINGSDNKIALAARPVKAIKPPTPAVRASWVHKTGA
                     TGGFGSYVAFIPEKELGIVMLANKNYPNPARVAAACQILNALQ"
     gene            6317..6850
                     /locus_tag="JN125_004443"
     CDS             6317..6850
                     /locus_tag="JN125_004443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_313157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HAY8873925.1"
                     /translation="MRLLPLVAAATAAFLVVACSSPTPPRGVTVVNNFDAKRYLGTWY
                     EIARFDHRFERGLEKVTATYSLRDGGGLNVINKGYNPDREMWQQSEGKAYFTGAPTRA
                     ALKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVAT
                     REGFDVSKFIWVQQPGS"
     gene            complement(6847..7164)
                     /locus_tag="JN125_004444"
     CDS             complement(6847..7164)
                     /locus_tag="JN125_004444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_418572.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quaternary ammonium compound-resistance protein
                     SugE"
                     /protein_id="HAY8873926.1"
                     /translation="MSWIILVIAGLLEVVWAVGLKYTHGFSRLTPSVITVTAMIVSMA
                     LLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESANPMRLASLALIVLGIIGLKL
                     STH"
     gene            complement(7346..7492)
                     /gene="ecnB"
                     /locus_tag="JN125_004445"
     CDS             complement(7346..7492)
                     /gene="ecnB"
                     /locus_tag="JN125_004445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein toxin entericidin B"
                     /protein_id="HAY8873927.1"
                     /translation="MVKKTIAAIFSVLVLSTVLTACNTTRGVGEDISDGGNAISGAAT
                     KAQQ"
     gene            complement(7603..7728)
                     /gene="ecnA"
                     /locus_tag="JN125_004446"
     CDS             complement(7603..7728)
                     /gene="ecnA"
                     /locus_tag="JN125_004446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_026283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein antitoxin entericidin A"
                     /protein_id="HAY8873928.1"
                     /translation="MMKRLIVLVLLASTLLTGCNTARGFGEDIKHLGNSISRAAS"
     gene            complement(7780..8346)
                     /gene="efp"
                     /locus_tag="JN125_004447"
     CDS             complement(7780..8346)
                     /gene="efp"
                     /locus_tag="JN125_004447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004871142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HAY8873929.1"
                     /translation="MATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLR
                     RLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGD
                     NAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGA
                     VVKVPLFVQIGEVIKVDTRSGEYVSRVK"
     gene            8388..9437
                     /gene="epmB"
                     /locus_tag="JN125_004448"
     CDS             8388..9437
                     /gene="epmB"
                     /locus_tag="JN125_004448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000940527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EF-P beta-lysylation protein EpmB"
                     /protein_id="HAY8873930.1"
                     /translation="MAHIVTLNTPSREDWLTQLADVVTDPDELLRLLNIDADEKLLAG
                     RSAKKLFALRVPRSFIDRMEKGNPDDPLLRQVLTSQDEFVVASGFSTDPLEEQHSVVP
                     GLLHKYHNRALLLVKGGCAVNCRYCFRRHFPYAENQGNKRNWQTALEYVAAHPELDEM
                     IFSGGDPLMAKDHELDWLLTQLEAIPHIKRLRIHSRLPIVIPARITDALVERFSHSTL
                     QILLVNHINHANEIDETFRQAMAKLRRVGVTLLNQSVLLRDVNDNAQTLANLSNALFD
                     AGVMPYYLHVLDKVQGAAHFMVSDDEARQIMRELLTLVSGYLVPKLAREIGGEPSKTP
                     LDLQLRQQLLIKQGS"
     gene            9811..10680
                     /locus_tag="JN125_004449"
     CDS             9811..10680
                     /locus_tag="JN125_004449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_710010.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873931.1"
                     /translation="MAISIKGVNTGVIRKSNNFIALALKIKEPRNKESLFFMSVMELR
                     DLLIALESRLHQKHKLDAAARLQYEQARDKVIKKMAENIPEILVDELKNADINRRVNT
                     LELTDNQGENLTFVLTLHDGSKCELVVNELQIEMLARAIIHAINNAEMRELALRITSL
                     LDFLPLYDVDCQENGNLEYDTYSQPEWKHNLFDHYLAVLYRFKDESGKEQFSGAVVKT
                     REATPGKEVEAITRRMLDFSPRLKKLAGVPCQVYVRTVAANNAQPLTQDQCLRALHNL
                     RVQSTSKTAPQAK"
BASE COUNT         2807 a         2720 c         2712 g         2546 t
ORIGIN      
        1 ccatcataca ctaaatcagt aagttggcag cattaccagg cgaatggaat aaagaataac
       61 aatgcagaaa atatataaaa gggaatcgca ctataaccca ttaagtaata agccgatggg
      121 ctattggcaa atccaaatac ggaagtaaag atcatcaata tgagtcctat cagactcatc
      181 ttttttatcg tgtgaggcat gaaaccatcc ttcatttcag cgcgtgtata acacgtgccc
      241 actgaactgc actgcgcaac attgagcagg cagcgtaaaa accaatacag aattgatacc
      301 cggatgatat caaatatcca gtcttaaatt gtggccttta acggaaaaat gaaaatatat
      361 gctacagaat ggcgcttatc acgccattct tcgctgttaa ttcagtaatt tttcagaatt
      421 atgcccggtc aacgctaaag gcgatgactt cagccagtgt ctccgcgccc agcgccaaca
      481 tcaccagacg atcaacacct aatgccacgc cggaacagtc aggcataccg actttcaagg
      541 cttcaatcag attctggtca atggggtgct gcggcaaacc gcgcgccgcg cgcttacggt
      601 tatcttgttc aaagcgttgt tgctgctcac gggcatccgt taattcatgg aaaccattcg
      661 ccagctcaat acctttataa taaacctcaa agcgttcagc gacccgatga tcttcggtac
      721 tgatttgcgc cagtgatgcc tggctggctg gaaagtggta cacaaaggtc ggtttttctt
      781 tgccaatatt tggctctacg ccaaaggtaa acagcaattg tagcaacgtg tcgcggtctt
      841 cttcggtatc agcaacgtta ctcaaatcca gtttcgctgc gacttcccgc agttgcgttt
      901 tgtcggcaga gagcgggtca atttccagat aacgcaagaa agcttgttga taagaaaggc
      961 tttctgctgc cgggcagtcc agcacctgtt gtaagagatc gtccacctcg ttcatcaacc
     1021 ggtacatatc atagtgcggt cgataccact caagcatagt gaactcaggg ttgtgataac
     1081 gccccatctc ttcattacgg aagctgcggc acagctggaa taccggccca caaccggcaa
     1141 ccagcaggcg tttcatatgg tattccgggc tggtcattaa ccagagattc atcccctgcg
     1201 aatgcccggg gccaacgaaa cgtgtctcaa acgggaccaa atgaatatcg gttaccgtcg
     1261 cctggctcat acaaggcgtc tccacctcca gcactccacg atcagcaaag aaacgacgga
     1321 tctccgccat aatcgccgcg cgttttaata agttaggaat ggatgcgctc ggctgccagg
     1381 atgccgtttc gctcatagtt aaatctccag tttttgacaa gggcacgaag tctactcgca
     1441 acgcgacggc gagacaaatt ttacgcagga atcaaacagc ggtgggcagt gactaaaaaa
     1501 agcacgatct gatggtttag taattaaatg aatcatcttc agtgataatt tagccctctt
     1561 gcgcactaaa aaaatcgatc tcgtcaaatt tcagacttat ccatcagact atactgttgt
     1621 acctataaag gagcagtgga atagcgttcg cagaccgtaa ctttcaggca cttaccctga
     1681 agtacggggc tgtgggataa aaacaatctg gaggaatgtc gtgcaaacct ttcaagccga
     1741 tcttgccatt gtaggcgccg gtggcgcggg attacgtgct gcaattgctg ccgcgcaagc
     1801 aaatccaaat gcaaaaatcg cactaatctc aaaagtatac ccgatgcgta gccataccgt
     1861 tgctgcagaa gggggctccg ccgctgtcgc gcaggatcat gacagcttcg aatatcactt
     1921 tcacgataca gtagcgggtg gcgactggtt gtgtgagcag gatgtcgtgg attatttcgt
     1981 ccaccactgc ccaaccgaaa tgacccaact ggaactgtgg gggtgcccat ggagccgtcg
     2041 cccggatggt agcgtcaacg tacgtcgctt cggcggcatg aaaatcgagc gcacctggtt
     2101 cgccgccgat aagaccggct tccatatgct gcacacgctg ttccagacct ctctgcaatt
     2161 cccgcagatc cagcgttttg acgaacattt cgtgctggat attctggttg atgatggtca
     2221 tgttcgcggc ctggtagcaa tgaacatgat ggaaggcacg ctggtgcaga tccgtgctaa
     2281 cgcggtcgtt atggctactg gcggtgcggg tcgcgtttat cgttacaaca ccaacggcgg
     2341 catcgttacc ggtgacggta tgggtatggc gctaagccac ggcgttccgc tgcgtgacat
     2401 ggaattcgtt cagtatcacc caaccggtct gccaggttcc ggtatcctga tgaccgaagg
     2461 ctgccgtggt gaaggcggta ttctggtcaa caaaaatggc taccgttatc tgcaagatta
     2521 cggcatgggc ccggaaactc cgctgggcga gccgaaaaac aaatatatgg aactgggtcc
     2581 acgcgacaaa gtttctcagg ccttctggca cgaatggcgt aaaggcaaca ccatctccac
     2641 gccgcgtggc gatgtggttt atctcgactt gcgtcacctc ggcgagaaaa aactgcatga
     2701 acgtctgccg ttcatctgcg aactggcgaa agcgtacgtt ggcgtcgatc cggttaaaga
     2761 accgattccg gtacgtccga ccgcacacta caccatgggc ggtatcgaaa ccgatcagaa
     2821 ctgtgaaacc cgcattaaag gtctgttcgc cgtgggtgaa tgttcctctg ttggtctgca
     2881 cggtgcaaac cgtctgggct ccaactccct ggcggaactg gtggtcttcg gccgtctggc
     2941 cggtgaacaa gcgacagagc gtgcagcaac tgccggtaat ggcaacgaag aggcaattga
     3001 agcgcaggca gctggcgttg aacaacgtct gaaagatctg gttaaccagg atggcggcga
     3061 aaactgggcg aagatccgcg acgaaatggg cctagcaatg gaagaaggtt gcggtatcta
     3121 ccgtacgccg gaactgatgc agaaaaccat cgacaagctg gcagagctgc aggaacgctt
     3181 caagcgcgtg cgcatcaccg acacctccag cgtgttcaac accgacctgc tctacaccat
     3241 tgaactgggc cacggtctga acgttgctga atgtatggcg cactccgcaa tggcacgtaa
     3301 agagtcccgc ggcgcacacc agcgtctgga cgaaggttgc accgagcgtg acgacgtcaa
     3361 cttcctcaaa cacaccctcg ccttccgcga tgctgatggc acgactcgcc tggagtacag
     3421 cgacgtgaag attactacgc tgccgccagc taaacgcgtt tacggtggcg aagcggatgc
     3481 agccgataag gcggaagcag ccaataagaa ggagaaggcg aatggctgag atgaaaaacc
     3541 tgaaaattga ggtggtgcgc tataacccgg aagtcgatac cgcaccgcat agcgcattct
     3601 atgaagtgcc ttatgacgca actacctcat tactggatgc gctgggctac atcaaagaca
     3661 acctggcacc ggacctgagt taccgctggt cctgccgtat ggcgatttgt ggttcctgcg
     3721 gcatgatggt taacaacgtg ccaaaactgg catgtaaaac cttcctgcgt gattacaccg
     3781 acggtatgaa ggttgaagcg ttagctaact tcccgattga acgcgatctg gtggtcgata
     3841 tgacccactt catcgaaagt ctggaagcga tcaaaccgta catcatcggc aactcccgca
     3901 ccgcggatca gggtactaac atccagaccc cggcgcagat ggcaaagtat caccagttct
     3961 ccggttgcat caactgtggt ctgtgctacg ccgcgtgccc gcagtttggc ctgaacccag
     4021 agttcatcgg tccggctgcc attacgctgg cgcatcgtta taacgaagat agccgcgacc
     4081 acggtaagaa ggagcgtatg gcgcagttga acagccagaa cggcgtatgg agctgtactt
     4141 tcgtgggcta ttgctccgaa gtctgcccga aacacgtcga tccggctgcg gccattcagc
     4201 agggcaaagt agaaagttcg aaagactttc ttatcgcgac cctgaaacca cgctaaggag
     4261 tgcaacatga cgactaaacg taaaccgtat gtacggccaa tgacgtccac ctggtggaaa
     4321 aaattgccgt tttatcgctt ttacatgctg cgcgaaggca cggcggttcc ggctgtgtgg
     4381 ttcagcattg aactgatttt cgggctgttt gccctgaaaa atggcccgga agcctgggcg
     4441 ggattcgtcg actttttaca aaacccggtt atcgtgatca ttaacctgat cactctggcg
     4501 gcagctctgc tgcacaccaa aacctggttt gaactggcac cgaaagcggc caatatcatt
     4561 gtaaaagacg aaaaaatggg accagagcca attatcaaaa gtctctgggc ggtaactgtg
     4621 gttgccacca tcgtaatcct gtttgttgcc ctgtactggt aaggagcctg agatgattaa
     4681 tccaaatcca aagcattctg acgaaccggt attctggggc ctcttcgggg ccggtggtat
     4741 gtggagcgca attattgcgc cggtgatgat cctgctggtg ggtattctgc tgccactggg
     4801 gctgtttccg ggtgatgcgc tgagctacga gcgcgttctg gcgttcgcgc agagcttcat
     4861 tggtcgcgta ttcctgttcc tgatgatcgt tctgccgctg tggtgtggtt tacaccgtat
     4921 gcaccacgcg atgcacgatc tgaaaattca cgtgcctgcg ggcaaatggg ttttctacgg
     4981 tctggctgct atcctgacag ttgtcacgct gattggtatc gttacaatct aacgtatcgc
     5041 caatgtaaat ccggcccgcc tatggcgggc cgttttgtat ggaaaccaga ccttatgttc
     5101 aaaacgacgc tctgcgcctt attaattacc gcctcttgct ccacatttgc tgcccctcaa
     5161 caaatcaacg atattgtgca tcgcacaatt accccgctta tagagcaaca aaagatcccc
     5221 ggtatggcgg tggcggtaat ttatcagggt aaaccttatt actttacctg gggctatgcg
     5281 gacatcgcca aaaagcagcc cgtcacacag caaacgttgt ttgagttagg ttcggtcagc
     5341 aaaacattta cgggcgtgct tggtggcgac gctattgctc gaggggaaat caagttaagc
     5401 gatcccgcaa caaaatactg gcctgaactt accgctaaac agtggaatgg gatcacacta
     5461 ttacatcttg cgacctacac cgctggcggc ctgccattgc agatgccgga tgaagtgaaa
     5521 tcctcaagcg acttgctgcg cttctatcaa aactggcagc ctgcatgggc tccaggaaca
     5581 caacgtctgt atgccaactc cagtatcggt ttgttcggcg cactggctgt gaagccgtct
     5641 ggtttgagtt ttgagcaggc gatgcaaact cgtgtcttcc agccactcaa actcaaccat
     5701 acgtggatta atgtaccgcc cgcagaagaa aagaattacg cctggggata tcgcgaaggc
     5761 aaggcagttc atgtttcgcc aggggcgtta gatgctgaag cttatggtgt gaagtcgacc
     5821 attgaagata tggcccgctg ggtgcaaagc aatttaaccc cccttgatat caatgagaaa
     5881 acgcttcaac aagggataca actggcacaa tctcgctact ggcaaatcgg cgatatgtat
     5941 cagggcctgg gctgggaaat gctggactgg ccggtcaatc ctgacagcat cattaacggc
     6001 agtgacaata aaattgcact ggcagcacgc ccggtaaaag cgattaagcc cccaactcct
     6061 gcagtacgcg catcatgggt acataaaacg ggggcgaccg gcggatttgg tagctatgtc
     6121 gcgtttattc cagaaaaaga gctgggtatc gtgatgctgg ctaacaaaaa ctatcccaat
     6181 ccagcgagag tcgccgccgc ctgtcagatt ctcaacgctc tacagtaaaa tttcatcggg
     6241 tccgaatttt cggacctttt ctgcgctttt ccttgctgtc atctacactt agaaaaaaac
     6301 cagtaaggaa acatttatgc gcctgctccc tctcgttgcc gcagcgacag ctgcatttct
     6361 ggtcgttgcc tgcagttctc ctacgccgcc gcgtggcgtg acagtagtga ataatttcga
     6421 cgctaaacgc tatctcggta cctggtatga gattgcccgt tttgatcacc gttttgaacg
     6481 tggactggaa aaagtcaccg caacatacag tctgcgtgat ggcggcggcc tgaatgtcat
     6541 caataaaggc tataaccctg acagagaaat gtggcagcag agtgaaggga aagcgtactt
     6601 taccggcgca ccaacacgcg ctgcgctgaa agtgtcattc tttggtcctt tctatggcgg
     6661 ttataacgtc attgcacttg atcgggaata ccgccatgcg ctggtttgcg gcccggaccg
     6721 cgactacctg tggatactct cccgcacgcc aaccatttct gacgaagtga aacaggagat
     6781 gctggcagtc gcgacccggg aagggtttga tgtcagtaag tttatttggg tacagcagcc
     6841 cggtagttag tgagtgctga gtttcagacc aataatcccc aatacgatta acgccagact
     6901 cgccaggcgc atcgggttag cggactcacc gagcagcaca atgccggtga tagccgcgcc
     6961 gactgcgcca atacccgtcc acacggcata agccgtccct actggtaacg atttcatcgc
     7021 ccaggcaagt agcgccatac tgacaatcat cgccgtcacg gtaataacac tcggcgtcaa
     7081 acgactaaag ccgtgggtat atttcaggcc aacggcccat accacttcca gcagaccagc
     7141 aataactaag ataatccagg acatatcagg ctccggagaa ttggggccgt ccccggtgaa
     7201 aagacgcgtt tgcaggtcgt cctgcaaagc tgatggttga acggatattt tgccaggtgg
     7261 caggggaatg tcaactatta ccttagtgac tatcgcagaa aaaacaaacg gcacgacaca
     7321 gctgtcgtac cgttattgct tattgctatt gctgcgcttt cgttgctgcg ccagaaatcg
     7381 cgttaccgcc atcagaaatg tcttcaccaa cgccacgcgt ggtgttgcag gcagttaata
     7441 ctgttgaaag caccagaaca gaaaagatcg ctgcaattgt cttcttcacc ataacgtctt
     7501 ccttttaggt aatgttattt atgtttgcct atagcaaatt aataatagac aacatcgcca
     7561 aaaatgacgg aaatctgatg atttttcgga agagaagaaa aattagctgg cagcgcgaga
     7621 gatggagttg ccgagatgtt tgatgtcttc gccgaaaccg cgagcggtgt tacagcccgt
     7681 gagcagcgta ctagcaagca aaacaagaac gataaggcgt ttcatcatct ctgatctgaa
     7741 taagtgatgg tgcagcctgc aggccgcacc acaaccgcat tacttcacgc gagagacgta
     7801 ttcaccagag cgggtatcca ctttgatgac ttcgccgatt tgtacgaaca gcggaacctt
     7861 aaccacagcg ccagtagaca gggtagccgg tttgccgcca gtacctgcgg tatcaccttt
     7921 caggcccgga tcggtatcaa cgatttccag ttcaacgaag ttcggcggag taacggagat
     7981 cggctgacca ttccacagag ttacgataca ctctgcctga tccagcagcc atttagcgtt
     8041 atcgccaatt gcttttgcat cagcagacag ctgctcgaaa gtttcgttgt tcatgaagtg
     8101 ccagaactca ccgtcgttgt acaggtaagt caggttcata tcgacaacat cagcgccttc
     8161 agcggaatca gtagatttga aggttttttc tacgcgagta ccggtcagca gacgacgcag
     8221 tttaacgcga gcaaatgcct ggcctttacc cggttttacg aattcactcg cttcaaccgc
     8281 gtaaggttcg ccgtctaaca tgattttaag accagcacga aaatcgttgc tatagtacgt
     8341 tgccataagg ccctctgaaa tttgttaatt ggtagctaag ccacaaaatg gcacatattg
     8401 taaccctaaa taccccatcc agagaagatt ggttaacgca acttgccgat gttgtgaccg
     8461 atcctgatga acttctgcgt cttttgaata tagacgcgga cgaaaaactg ttggccggac
     8521 gcagcgccaa aaagctgttt gccctgcgtg tgccccgctc atttatcgat cgcatggaga
     8581 aaggcaatcc ggacgatcct cttttgcgtc aggtacttac ctcgcaagat gagtttgtcg
     8641 tcgcgtccgg attctccacc gacccactgg aagaacagca cagcgtagtg cctggtttgt
     8701 tgcataaata ccacaaccgg gcgcttttgc tggtcaaagg cggctgcgcg gtaaattgcc
     8761 gctattgctt ccgtcgccac ttcccctatg ccgaaaatca gggcaacaag cgtaactggc
     8821 agactgcact tgagtatgtt gctgcgcatc cggaactgga cgagatgatt ttctccggcg
     8881 gcgatccgct gatggcgaaa gatcacgagc tggactggtt gctcacacaa ctggaagcca
     8941 tcccgcatat caaacgtctg cggattcaca gccgtctgcc gattgtgatc ccggcacgca
     9001 tcacagatgc gctggttgaa cgcttttcac attctacgct gcaaatcctg ctggtgaatc
     9061 acatcaacca tgccaatgag atagatgaaa cattccgtca ggcgatggct aagttgcgcc
     9121 gggtaggcgt tactttgctg aaccagagcg ttctgttacg tgatgtgaac gataacgcac
     9181 aaacgctggc aaacctgagt aatgcgttgt tcgatgccgg cgtgatgccg tattacctgc
     9241 atgtgctcga taaagtacag ggcgcggcgc attttatggt gagtgatgac gaagcacggc
     9301 agattatgcg tgagttgctg acattggtgt cgggatatct ggtgccgaaa ctggcgcgag
     9361 aaattggcgg cgaacccagc aaaacgccgc tggatctcca gctacgccag cagttactga
     9421 ttaaacaggg aagttaaaca ttaaaattgc ctgatgcgct acgcttatca ggcctacatc
     9481 gtgcattgaa attgaatgga tttgcaatga actgtaggcc ggataaggcg tttacgccgc
     9541 atccggcaag agcaacaaac gcaagtacag caacctgtca ttaaactgag aaatttaatc
     9601 tttgcccgtt gcataacctt taattattca tatgcattgc tgttgttact ttttatatag
     9661 ctaacaccaa taattaacct ttcttttctg tttatataga gtgagcacgg ctatttatgt
     9721 tattttaaca actattacta ccaagcccat ttatctggct tataaattaa aattaattat
     9781 ttaattgaga aatggttagg gagaacctac atggccataa gcatcaaggg tgttaatacc
     9841 ggtgttattc gcaagagtaa taatttcatt gcactggcgc tgaaaattaa agaacctcgc
     9901 aataaagaat cgttgttctt tatgtctgtc atggaactgc gcgacctgct gattgcgctg
     9961 gaaagtcgtc tgcatcaaaa gcataaactg gatgctgctg cacgccttca gtatgagcaa
    10021 gctcgcgata aagtcattaa gaaaatggca gaaaacatcc cagaaattct ggttgatgag
    10081 cttaaaaatg ccgatattaa tcgtcgggtt aacacgctgg aacttaccga taatcaaggc
    10141 gaaaatctta ccttcgtatt aacgctacat gacggtagca aatgtgagtt agtcgtcaat
    10201 gagttgcaga ttgaaatgct agcgcgagca atcattcatg caattaataa tgcggaaatg
    10261 cgtgaactgg cattacgtat tacctcactg ttagatttcc tgccgttata tgacgttgac
    10321 tgccaggaaa atggcaatct ggaatatgac acctattccc aaccggaatg gaaacataac
    10381 ttgttcgacc attatctggc ggtgctttac cgctttaaag atgaaagtgg caaagaacaa
    10441 tttagcggcg cagtggtgaa aacgcgtgaa gcaacgccgg gtaaagaagt agaggcgatc
    10501 actcgccgaa tgcttgattt cagcccacga ctgaaaaaac tcgcgggtgt gccatgtcag
    10561 gtctatgttc gcaccgtagc ggcgaataac gcccaaccgc taacccagga tcaatgctta
    10621 cgcgcgctgc ataacttacg tgttcaatcc accagcaaaa ctgcaccaca ggcgaaataa
    10681 tctcatcttt gctaatgcga ggctggagcc atccagcctg aaatgactga taacgtgatc
    10741 gttggtcatg ccggatgcgg cgtaaacgcc ttatccggcc tacaa
//
LOCUS       DADMHM010000476         9932 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.guided.147, whole genome shotgun sequence.
ACCESSION   DADMHM010000476 DADMHM010000000
VERSION     DADMHM010000476.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 9932)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9932)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9932
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.guided.147"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            complement(14..343)
                     /locus_tag="JN125_004450"
     CDS             complement(14..343)
                     /locus_tag="JN125_004450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003252515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HAY8873932.1"
                     /translation="MRLFGYARVSTSQQSLDLQVRALKDAGVKANRIFTDKASGSSTD
                     REGLDLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVAVRFIDDGISTDGG
                     TVANSRW"
     gene            507..701
                     /locus_tag="JN125_004451"
                     /pseudo
     CDS             507..701
                     /locus_tag="JN125_004451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019280874.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4158 domain-containing protein"
     gene            907..2169
                     /locus_tag="JN125_004452"
                     /pseudo
     CDS             907..2169
                     /locus_tag="JN125_004452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000608644.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS1380-like element ISEc9 family transposase"
     gene            2425..3300
                     /locus_tag="JN125_004453"
     CDS             2425..3300
                     /locus_tag="JN125_004453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011091028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class A extended-spectrum beta-lactamase
                     CTX-M-15"
                     /protein_id="HAY8873933.1"
                     /translation="MVKKSLRQFTLMATATVTLLLGSVPLYAQTADVQQKLAELERQS
                     GGRLGVALINTADNSQILYRADERFAMCSTSKVMAAAAVLKKSESEPNLLNQRVEIKK
                     SDLVNYNPIAEKHVNGTMSLAELSAAALQYSDNVAMNKLIAHVGGPASVTAFARQLGD
                     ETFRLDRTEPTLNTAIPGDPRDTTSPRAMAQTLRNLTLGKALGDSQRAQLVTWMKGNT
                     TGAASIQAGLPASWVVGDKTGSGGYGTTNDIAVIWPKDRAPLILVTYFTQPQPKAESR
                     RDVLASAAKIVTDGL"
     gene            complement(3347..3679)
                     /locus_tag="JN125_004454"
     CDS             complement(3347..3679)
                     /locus_tag="JN125_004454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001393253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin fold metalloprotein, WbuC family"
                     /protein_id="HAY8873934.1"
                     /translation="MRPHRHPHTFELLLPLRGRFVVLNFDDRGTVTHRAILGETCTVL
                     EMAAGTWHAVLSLDTGGIIFEVKHGGYQPVAADDYAHWAPAEGEPGTTELMAWYAQAQ
                     VGDSTFAV"
     gene            3693..6488
                     /locus_tag="JN125_004455"
                     /pseudo
     CDS             3693..6488
                     /locus_tag="JN125_004455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001496645.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Tn3-like element Tn3 family transposase"
     gene            complement(6531..7546)
                     /locus_tag="JN125_004456"
                     /pseudo
     CDS             complement(6531..7546)
                     /locus_tag="JN125_004456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076612175.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="IS3 family transposase"
     gene            7941..8597
                     /locus_tag="JN125_004457"
     CDS             7941..8597
                     /locus_tag="JN125_004457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001516695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolone resistance pentapeptide repeat protein
                     QnrS1"
                     /protein_id="HAY8873935.1"
                     /translation="METYNHTYRHHNFSHKDLSDLTFTACTFIRSDFRRANLRDTTFV
                     NCKFIEQGDIEGCHFDVADLRDASFQQCQLAMANFSNANCYGIEFRACDLKGANFSRT
                     NFAHQVSNRMYFCSAFISGCNLSYANMERVCLEKCELFENRWIGTNLAGASLKESDLS
                     RGVFSEDVWGQFSLQGANLCHAELDGLDPRKVDTSGIKIAAWQQELILEALGIVVYPD
                     "
     gene            complement(8916..9344)
                     /locus_tag="JN125_004458"
                     /pseudo
     CDS             complement(8916..9344)
                     /locus_tag="JN125_004458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014839983.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
     gene            complement(9377..>9932)
                     /locus_tag="JN125_004459"
     CDS             complement(9377..>9932)
                     /locus_tag="JN125_004459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001493761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ISKra4 family transposase"
                     /protein_id="HAY8873936.1"
                     /translation="MISLSPPTICNSADWFHITMRLKVLMQYARGLLVSDPEAGSKVL
                     ALLESIKRYLWHGNVVAALEHIDNCVMYCDDPELSYPSLKSLQKHLDEMYTYIRNNKM
                     MIPNYGEMRRYGEPVSTAFVESTINEVIARRMAKKQQMQWSRKGAHYLLQTRTAVLNN
                     ELQDKFVCWYPGFQSDGKGPAMAA"
BASE COUNT         2634 a         2381 c         2365 g         2552 t
ORIGIN      
        1 gatgataagt ttatcaccac cgactatttg caacagtgcc accgtcggta ctgatcccgt
       61 catcaatgaa ccggactgcc acgccctgag cgtcaaattc ctttatcagt tggatcatat
      121 cggcagtgtc gcggccaaga cggtcgagct tcttaaccag aatgacatca ccttcctcca
      181 ccttcatcct cagcaaatcc agcccttccc ggtctgttga actgccggat gccttatcgg
      241 taaatatacg gtttgctttc acacctgcgt ctttgagtgc tctgacctga agatcaagag
      301 actgctgact ggttgagacc cgagcgtaac caaaaagtcg cataaaaatg taccttaaat
      361 cgaatatcgg acaactcatg tctattatta caaatttacg atttaataga catattaatg
      421 taacagtttt acgatgtccg ataatttata acatttcgta cggttggaaa aatgttacta
      481 aatgcccgtc aggcagggag gccgatatgc ccgttgactt tctgaccact gagcagactg
      541 aaagctatgg cagattcacc ggtgaaccgg atgagcttca gctggcacga tattttcacc
      601 ttgatgaagc agacaaggaa tttatcggaa aaagcagagg tgatcacaac cgtctgggca
      661 ttgccctgca aattggatgt gtccgttttc tgggcacctt cctcaccgat atgaatcata
      721 cctagattct acgtcagtac ttcaaaaagc ataatcaaag ccttgataaa tatgcattcc
      781 ttcgaaattc agctttcacc cattgggtga aagaaaagtg ctcaaaaata tgttaaatta
      841 tcagctttta tgactcgata tatggtaaaa taatagtaag aaaagtagta aaaaggggtt
      901 ctaattatga ttaataaaat tgatttcaaa gctaagaatc taacatcaaa tgcaggtctt
      961 tttctgctcc ttgagaatgc aaaaagcaat gggatttttg attttattga aaatgacctc
     1021 gtatttgata atgactcaac aaataaaatc aagatgaatc atataaagac catgctctgc
     1081 ggtcacttca ttggcattga taagttagaa cgtctaaagc tacttcaaaa tgatcccctc
     1141 gtcaacgagt ttgatatttc cgtaaaagaa cctgaaacag tgtcacggtt tctaggaaac
     1201 ttcaacttca agacaaccca aatgtttaga gacattaatt ttaaagtctt taaaaaactg
     1261 ctcactaaaa gtaaattgac atccattacg attgatattg atagtagtgt aattaacgta
     1321 gaaggtcatc aagaaggtgc gtcaaaagga tataatccta agaaactggg aaaccgatgc
     1381 tacaatatcc aatttgcatt ttgcgacgaa ttaaaagcat atgttaccgg atttgtaaga
     1441 agtggcaata cttacactgc aaacggtgct gcggaaatga tcaaagaaat tgttgctaac
     1501 atcaaatcag acgatttaga aattttattt cgaatggata gtggctactt tgatgaaaaa
     1561 attatcgaaa cgatagaatc tcttggatgc aaatatttaa ttaaagccaa aagttattct
     1621 acactcacct cataagcaac gaattcatca attgtattcg ttaaaggaga agaaggtaga
     1681 gaaactacag aactgtatac aaaattagtt aaatgggaaa aagacagaag atttgtcgta
     1741 tctcgcgtac tgaaaccaga aaaagaaaga gcacaattat cacttttaga aggttccgaa
     1801 tacgactact ttttctttgt aacaaatact accttgcttt ctgaaaaagt agttatatac
     1861 tatgaaaagc gtggtaatgc tgaaaactat atcaaagaag ccaaatacga catggcggtg
     1921 ggtcatctct tgctaaagtc attttgggcg aatgaagccg tgtttcaaat gatgatgctt
     1981 tcatataacc tatttttgtt gttcaagttt gattccttgg actcttcaga atacagacag
     2041 caaataaaga cctttcgttt gaagtatgta tttcttgcag caaaaataat caaaaccgca
     2101 agatatgtaa tcatgaagtt gtcggaaaac tatccgtaca agggagtgta tgaaaaatgt
     2161 ctggtataat aagaatatca tcaataaaat tgagtgttgc tctgtggata acttgcagag
     2221 tttattaagt atcattgcag caaagatgaa atcaatgatt tatcaaaaat gattgaaagg
     2281 tggttgtaaa taatgttaca atgtgtgaga agcagtctaa attcttcgtg aaatagtgat
     2341 ttttgaagct aataaaaaac acacgtggaa tttagggact attcatgttg ttgttatttc
     2401 gtatcttcca gaataaggaa tcccatggtt aaaaaatcac tgcgccagtt cacgctgatg
     2461 gcgacggcaa ccgtcacgct gttgttagga agtgtgccgc tgtatgcgca aacggcggac
     2521 gtacagcaaa aacttgccga attagagcgg cagtcgggag gcagactggg tgtggcattg
     2581 attaacacag cagataattc gcaaatactt tatcgtgctg atgagcgctt tgcgatgtgc
     2641 agcaccagta aagtgatggc cgcggccgcg gtgctgaaga aaagtgaaag cgaaccgaat
     2701 ctgttaaatc agcgagttga gatcaaaaaa tctgaccttg ttaactataa tccgattgcg
     2761 gaaaagcacg tcaatgggac gatgtcactg gctgagctta gcgcggccgc gctacagtac
     2821 agcgataacg tggcgatgaa taagctgatt gctcacgttg gcggcccggc tagcgtcacc
     2881 gcgttcgccc gacagctggg agacgaaacg ttccgtctcg accgtaccga gccgacgtta
     2941 aacaccgcca ttccgggcga tccgcgtgat accacttcac ctcgggcaat ggcgcaaact
     3001 ctgcggaatc tgacgctggg taaagcattg ggcgacagcc aacgggcgca gctggtgaca
     3061 tggatgaaag gcaataccac cggtgcagcg agcattcagg ctggactgcc tgcttcctgg
     3121 gttgtggggg ataaaaccgg cagcggtggc tatggcacca ccaacgatat cgcggtgatc
     3181 tggccaaaag atcgtgcgcc gctgattctg gtcacttact tcacccagcc tcaacctaag
     3241 gcagaaagcc gtcgcgatgt attagcgtcg gcggctaaaa tcgtcaccga cggtttgtaa
     3301 tagcggaaac ggaatgggga aactcattcc gtttttgttt atcgccttag acggcaaaag
     3361 tgctgtcgcc cacctgcgct tgcgcatacc aggccataag ctccgtggtt cctggttctc
     3421 cttccgctgg agcccagtgc gcatagtcat cggcagccac gggttgatag ccaccgtgtt
     3481 ttacttcaaa aattatgcca ccggtatcca gcgacagcac ggcatgccag gttcctgcgg
     3541 ccatctccag caccgtacag gtttccccca atatcgcccg atgggtgacg gtaccccgat
     3601 cgtcaaaatt cagcaccacg aaacgacccc ttaatggcaa cagtagctcg aaggtgtgag
     3661 ggtgtcggtg cgggcgcacg taggtcccag gtcatattcc ttccggcgtc cggcatttta
     3721 ccgccagaca gctcgggatt cgtgatatca ccgttcttgc agaatacggt cagagggaaa
     3781 atacccgccg tgagcatgca gcgctgatac gtcagcacta tcagtatcgt gaatttgcct
     3841 ggccctggac atttcgcctt acccgtcttt tatatacccg gagctggata agcaacgaac
     3901 gtcctggcct gcttttcgat ctggcgacag ggtggcttat gcaacatcgt attattctcc
     3961 ccggagccac tacgctgacc cggttgattt cagaggtaag ggaaaaggcg acgttgcgcc
     4021 tgtggaacaa actggcactg ataccgtcag ccgaacagcg ttcacagctg gagatgctgc
     4081 tggggccaac tgattgcagc cgcctgtctt tactggaatc actgaaaaag ggccctgtga
     4141 ccatcagtgg tccggcgttt aatgaagcaa ttgaacgctg gaaaactctg aacgattttg
     4201 gcctgcatgc tgaaaacctg agtacactcc cggctgtgcg cctgaaaaat ctcgcacgtt
     4261 atgctggtat gacttcggtg ttcaatattg ccaggatgtc accgcagaaa aggatggcgg
     4321 ttctggttgc ctttgtcctt gcatgggaaa cgctggcgct ggatgatgca ttggacgttc
     4381 tggacgccat gctggccgtt atcatccgtg acgccagaaa gattgggcag aaaaaacggc
     4441 tccgctcgct gaaggatctg gataaatctg cattggcgct cgccagcgca tgttcgtacc
     4501 tgctgaaaga agaaacaccg gacgaatcga ttcgtgctga ggtgttcagc tacatcccaa
     4561 ggcaaaagct ggctgaaatc atcacgcttg tccgtgaaat tgcccggccc tcagacgata
     4621 attttcatga agaaatggtg gagcagtacg ggcgcgttcg tcgtttcctg ccccatctgc
     4681 tgaataccgt taaattttca tccgcacctg ccggggttac cactctgaat gcctgtgact
     4741 acctcagccg ggagttcagc tcacggcggc agttttttga cgacgcacca acggaaatta
     4801 tcagtcggtc atggaaacgg ctggtgatta acaaggaaaa acatatcacc cgcaggggat
     4861 acacgctctg ctttctcagt aaactgcagg atagtctgag gcggagggat gtctacgtta
     4921 ccggcagtaa ccggtgggga gatcctcgtg caagattact acagggtgct gactggcagg
     4981 caaaccggat taaggtttat cgttctttgg ggcacccgac agacccgcag gaagcaataa
     5041 aatctctggg tcatcagctt gatagtcgtt acagacaggt tgctgcacgt ctttgcgaaa
     5101 atgaggctgt cgaactcgat gtttctggcc cgaagccccg gttgacaatt tctcccctcg
     5161 ccagtcttga tgagccggac agtctgaaac gactgagcaa aatgatcagt gatctactcc
     5221 ctccggtgga tttaacggag ttgctgctcg aaattaacgc ccataccgga tttgctgatg
     5281 agtttttcca tgctagtgaa gccagtgcca gagttgatga tctgcccgtc agcatcagcg
     5341 ccgtgctgat ggctgaagcc tgcaatatcg gtctggaacc actgatcaga tcaaatgttc
     5401 ctgcactgac ccgacaccgg ctgaactgga caaaagcgaa ctatctgcgg gctgaaacta
     5461 tcaccagcgc taatgccaga ctggttgatt ttcaggcaac gctgccactg gcacagatat
     5521 ggggtggagg agaagtggca tctgcagatg gaatgcgctt tgttacgcca gtcagaacaa
     5581 tcaatgccgg accgaaccgc aaatactttg gtaataacag agggatcacc tggtacaact
     5641 ttgtgtccga tcagtattcc ggctttcatg gcatcgttat accggggacg ctgagggact
     5701 ctatctttgt gctggaaggt cttctggaac aggagaccgg gctgaatcca accgaaatta
     5761 tgaccgatac agcaggtgcc agcgaacttg tctttggcct tttctggctg ctgggatacc
     5821 agttttctcc acgcctggct gatgccggtg cttcggtttt ctggcgaatg gaccatgatg
     5881 ccgactatgg cgtgctgaat gatattgcca gagggcaatc agatccccga aaaatagtcc
     5941 ttcagtggga cgaaatgatc cggaccgctg gctccctgaa gctgggcaaa gtacaggttt
     6001 cagtgctggt ccgttcattg ctgaaaagtg aacgtccttc cggactgact caggcaatca
     6061 ttgaagtggg gcgcatcaac aaaacgctgt atctgcttaa ttatattgat gatgaagatt
     6121 accgccggcg cattctgacc cagcttaatc ggggagaaag tcgccatgcc gttgccagag
     6181 ccatctgtca cggtcaaaaa ggtgagataa gaaaacgata taccgacggt caggaagatc
     6241 aactgggcac actggggctg gtcactaacg ccgtcgtgtt atggaacact atttatatgc
     6301 aggcagccct ggatcatctc cgggcgcagg gtgaaacact gaatgatgaa gatatcgcac
     6361 gcctctcccc gctttgccac ggacatatca atatgctcgg ccattattcc ttcacgctgg
     6421 cagaactggt gaccaaagga catctgagac cattaaaaga ggcgtcagag gcagaaaacg
     6481 ttgcttaacg tgagttttcg ttccactgag cgtcagaccc ctaaaatcct gatgctgatg
     6541 tagtcccgtt ttatcgtcat cacgaagctt tctgctatgc cattgctttc cgggcttcgc
     6601 actgctgtcg tacaaggctc cagtcccagc aaccgggcga acgccggcac tgttggcaac
     6661 tgccttccga agcgtttttc caccgcaccc agcatgacat cctgcaccgt ttctttgtca
     6721 tagcctccgg tgctcgctgc ccagtcaatg atctccctgt cgcagcagtc ctgcgcgaag
     6781 gtcacccgca gcttttcgcc attatcacag cggaactcaa agccatctga gcaccagcgc
     6841 cggttacttt ccgctactgc tacgcgcccc ttatgggccc gcttacggca aggatcagcg
     6901 ggtttacgtt caagaagcag attatgcgtt ctcataatgc gatacacccg ctttgcatta
     6961 accacaggca ggccgtcccg ctccgactcc cgtcgcagca gcgcccacac acggcgataa
     7021 ccatacgtcg gcaggtcagc caccgccatg tttatccggg acaatacggt ggtatcgtca
     7081 gaacggggct gccgtctgcg atcctgtcag tcagatggcc ggtgaacccg aatgctcaac
     7141 tgcgcacgcg acacgccaag acttctgcaa acgtcgctta ttcgtcgttc ccaggcaacg
     7201 agggcgcatg cgcaatccat ttttttgccc ggccgaactc cacggcctct ttgagtatct
     7261 cggcttccat cgtctttttg cccagaaggc gctggagttc gcgaatttgc ttattggcgg
     7321 cagcgagttc ggaggccggc accacttcct cgcccgatgc aacagccgtc agtgaaccgt
     7381 cttaatattg cttgcgccat ttgaatatct ggtttgcatt gatgccatgc aggcgcgcga
     7441 catgagacac ggtcataccg ggctccatag tctgctgaat aatggcaatt ttttcctgcg
     7501 gtgtacgacg ccgacgccgc tcaggtcctg ataacacttc aaccatctta tcgttctgac
     7561 tggtattaaa catagttcca agactacctc ttattttaag agagtcgaag tgtctggtga
     7621 tctatggggc cagtctagcc ctcttccaag tgtagggaga tatagtcaaa gtttgcttct
     7681 ccgccgatga gtccgccctg cgtcggatag tccgattttt taccggcgaa gcacggctct
     7741 cctaacccta tctaaagcga ataacttttt tcaacagggc cgcgtgccaa tgcaagagcg
     7801 ataggcgctc tacgcgccaa tttgaccact taaaacaggt aaattgaggg gttgtaatgt
     7861 gttgatgtaa caggctttta ttttaatgtc ttggcatatg tataatggta gtctagccct
     7921 cctttcaaca aggagtactc atggaaacct acaatcatac atatcggcac cacaactttt
     7981 cacataaaga cttaagtgat ctcaccttca ccgcttgcac attcattcgc agcgactttc
     8041 gacgtgctaa cttgcgtgat acgacattcg tcaactgcaa gttcattgaa cagggtgata
     8101 tcgaaggctg ccactttgat gtcgcagatc ttcgtgatgc aagtttccaa caatgccaac
     8161 ttgcgatggc aaacttcagt aatgccaatt gctacggtat agagttccgt gcgtgtgatt
     8221 taaaaggtgc caacttttcc cgaacaaact ttgcccatca agtgagtaat cgtatgtact
     8281 tttgctcagc atttatttct ggatgtaatc tttcctatgc caatatggag agggtttgtt
     8341 tagaaaaatg tgagttgttt gaaaatcgct ggataggaac gaacctagcg ggtgcatcac
     8401 tgaaagagtc agacttaagt cgaggtgttt tttccgaaga tgtctggggg caatttagcc
     8461 tacagggtgc caatttatgc cacgccgaac tcgacggttt agatccccgc aaagtcgata
     8521 catcaggtat caaaattgca gcctggcagc aagaactgat tctcgaagca ctgggtattg
     8581 ttgtttatcc tgactaattg ctttgatgtg tgattttaaa cgctcaaatt tataaaacga
     8641 ataatattgt caaccttgca ataatagaca tagggacaac catgtataaa tttttaccct
     8701 caggcgtctt cacaatagag ccatatagca gtgggtcact tagtgggctt aatttttcca
     8761 ttaaagataa tattaatatt gctcagtata aaacatcata tggtagccca tcttggcaag
     8821 taaacataag gctgccattt ataaggcact gttgcaaaaa tgtggaggtg ataggggtac
     8881 tacgccggaa ccccagattt ttccgtccgt tcaaattatc cacggttgag cagcttgatc
     8941 ccgtccgccc gcagttgacc aacaggggaa atatgcctgt acaaagtttg ccgggttatc
     9001 ccaagttcct ggcatagcgt actgaccttt gtttctgatt gtcccattga tgccattgcc
     9061 agtcgcagtt tgactggcgt cattttataa ggtcggccgc cgttccgccc acgggctctt
     9121 gctgatgcca gacctgcagt cgttctttca gcaatcagtt cgcgctcaaa ctccgccagt
     9181 gcggcaaaga taccgaagac aagcttgcca gcggccgttg ttgtgtcgat agtcgccccg
     9241 tgaccggtca gcactttcag accggtcccc ctcgcggtca ggtcgtgcac tgtattaatg
     9301 agatgacgaa gatcacgacc gaggcggtcc agcttccata cgaccgagag cataaaaaat
     9361 attggggcag cgtgagctat gctgccatcg ctggtccctt cccgtcactt tgaaaacccg
     9421 gataccagca gacaaattta tcctgcagtt cgttattcaa aacggcggtc cgggtctgta
     9481 acaaataatg agcccctttt ctgctccact gcatctgctg ctttttggcc attcgtctgg
     9541 cgatcacttc attgatcgtg gattccacaa acgcggttga taccggctct ccgtaccgac
     9601 gcatttcgcc gtagtttggg atcatcatct tattattccg gatgtaggta tacatttcat
     9661 ccagatgttt ttgcagggat ttcaggctag gatagctgag ttcagggtca tcgcaataca
     9721 taacgcaatt atcaatatgt tccagcgcag cgacaacatt gccatgccag agatatcgtt
     9781 taatgctttc cagcagtgcc agaactttac tccccgcctc tggatctgat accagcagtc
     9841 cccgggcata ttgcatgagc accttcagcc tcatggtgat atgaaaccag tcggcactgt
     9901 tgcaaatagt cggtggtgat aaacttatca tc
//
LOCUS       DADMHM010000477         6238 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.guided.215, whole genome shotgun sequence.
ACCESSION   DADMHM010000477 DADMHM010000000
VERSION     DADMHM010000477.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6238)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6238)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6238
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.guided.215"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            85..336
                     /locus_tag="JN125_004460"
     CDS             85..336
                     /locus_tag="JN125_004460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005229779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873937.1"
                     /translation="MEDTRKTLSKEEIRPRRSRFSIGSAPLTSIAKSDAQISGGETRQ
                     DYKDPRRFPLVAPSCALLFLPFGLPVSFRCYGRGFSFHA"
     gene            996..1811
                     /gene="sul2"
                     /locus_tag="JN125_004461"
     CDS             996..1811
                     /gene="sul2"
                     /locus_tag="JN125_004461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001043260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfonamide-resistant dihydropteroate synthase
                     Sul2"
                     /protein_id="HAY8873938.1"
                     /translation="MNKSLIIFGIVNITSDSFSDGGRYLAPDAAIAQARKLMAEGADV
                     IDLGPASSNPDAAPVSSDTEIARIAPVLDALKADGIPVSLDSYQPATQAYALSRGVAY
                     LNDIRGFPDAAFYPQLAKSSAKLVVMHSVQDGQADRREAPAGDIMDHIAAFFDARIAA
                     LTGAGIKRNRLVLDPGMGFFLGAAPETSLSVLARFDELRLRFDLPVLLSVSRKSFLRA
                     LTGRGPGDVGAATLAAELAAAAGGADFIRTHEPRPLRDGLAVLAALKETARIR"
     gene            1872..2675
                     /locus_tag="JN125_004462"
                     /note="aph(3'')-Ib"
     CDS             1872..2675
                     /locus_tag="JN125_004462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010890156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(3'')-Ib"
                     /protein_id="HAY8873939.1"
                     /translation="MNRTNIFFGESHSDWLPVRGGESGDFVFRRGDGHAFAKIAPASR
                     RGELAGERDRLIWLKGRGVACPEVINWQEEQEGACLVITAIPGVPAADLSGADLLKAW
                     PSMGQQLGAVHSLSVDQCPFERRLSRMFGRAVDVVSRNAVNPDFLPDEDKSTPQLDLL
                     ARVERELPVRLDQERTDMVVCHGDPCMPNFMVDPKTLQCTGLIDLGRLGTADRYADLA
                     LMIANAEENWAAPDEAERAFAVLFNVLGIEAPDRERLAFYLRLDPLTWG"
     gene            2675..3511
                     /locus_tag="JN125_004463"
     CDS             2675..3511
                     /locus_tag="JN125_004463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000480972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase APH(6)-Id"
                     /protein_id="HAY8873940.1"
                     /translation="MFMPPVFPAHWHVSQPVLIADTFSSLVWKVSLPDGTPAIVKGLK
                     PIEDIADELRGADYLVWRNGRGAVRLLGRENNLMLLEYAGERMLSHIVAEHGDYQATE
                     IAAELMAKLYAASEEPLPSALLPIRDRFAALFQRARDDQNAGCQTDYVHAAIIADQMM
                     SNASELRGLHGDLHHENIMFSSRGWLVIDPVGLVGEVGFGAANMFYDPADRDDLCLDP
                     RRIAQMADAFSRALDVDPRRLLDQAYAYGCLSAAWNADGEEEQRDLAIAAAIKQVRQT
                     SY"
     gene            complement(3483..4022)
                     /locus_tag="JN125_004464"
     CDS             complement(3483..4022)
                     /locus_tag="JN125_004464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001120888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS91 family transposase"
                     /protein_id="HAY8873941.1"
                     /translation="MPHVAARTASRDRDTGRYQSHRPEQTLLYQIVDEYYPAFAALMA
                     EQGKELPGYVQREFEEFLQCGRLEHGFLRVRCESCHAEHLVAFSCKRRGFCPSCGARR
                     MAESAALLVDEVLPEQPMRQWVLSFPFQLRFLFGVVCGKGRNPTLRLWPAIFSGEIDV
                     FPGDRRSRLISSMTSVAPA"
     gene            complement(4066..4455)
                     /locus_tag="JN125_004465"
     CDS             complement(4066..4455)
                     /locus_tag="JN125_004465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000102614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HAY8873942.1"
                     /translation="MSTELNSGTVGGFGHMGPNDPYNDGHSGSGSSGGSFNGGGNGGH
                     DNSSGSSYTASFGLITGRHPITVPGTKNINSVDLSAVINNIIHHEGARNNMYLDTANN
                     VRVGVTGTGWQCLATAGISAEGKRTFR"
     gene            4625..5113
                     /locus_tag="JN125_004466"
     CDS             4625..5113
                     /locus_tag="JN125_004466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011161230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="entry exclusion protein 1"
                     /protein_id="HAY8873943.1"
                     /translation="MFCCYNTVHTGDTVTFMAWHTVQETLKLTGKSRSQLYRDMAKGL
                     VSYRTGKNDRREFETSELIRAYGELRTSETPKRHKEGHSKSVVSQAENAQLDVIQQKL
                     DALQQTVTLMLEDKMAREAENRLRNEEREQLQAEISRLADALAQEKKRGFWSRLFRSG
                     SE"
BASE COUNT         1512 a         1658 c         1625 g         1443 t
ORIGIN      
        1 ccgcttcctc gctcactgac tcgctacgct cggtcgttcg gctgcggcga gcggtaccgg
       61 cttacggacg gggacggaaa tttcctggaa gataccagga agacacttag caaagaagag
      121 ataaggccac ggcgaagccg tttttccata ggctccgccc ccctgacaag catcgcaaaa
      181 tctgacgctc aaatcagtgg tggcgaaacc cgacaggact ataaagatcc caggcgtttc
      241 cccctggtag ctccctcgtg cgctctcctg ttcctgcctt tcggtttacc ggtgtcattc
      301 cgctgttatg gccgcggttt ctcattccac gcctgacact cagttccgtg aaggcagttc
      361 gctccaagct ggactgtatg cacgaacccc ccgttcagtc cgaccgctgc gccttgtccg
      421 gtaactatca acttgagtcc aacccggaaa gacacgacaa aacgccactg gcagcagcca
      481 ttagtaacag gagtgcacga gaagatagat taagaggtct tgaagtagag gcctgactgc
      541 ggctacactg aaagaacagt tttggtaatg gcggtctcgt gaaccctgtt accgggttaa
      601 gcagttcccc aactgactta accttcgaac aaaccgcctc cccaggcggt tttttcgttt
      661 acagagcaag agattacgat tcattgaaaa ggatctcaag aagatccttt gtagattact
      721 atcaattaat cttccgaaca tgacaccagt cactgttgat tacggttaaa ccgctccgta
      781 acaggtttcc ctcgtattgg tgacttgcag caccaaagaa gcaaaaaaga taaatatatc
      841 tacttattga gagatgatat atttatttcc aaaatgctac agatacatca tcatgaaacg
      901 gatcaccgca aacaggttac tcgcctgggg attccctttc gacccgagca tccgtatgag
      961 actcatgctc gattattatt attatagaag cccccatgaa taaatcgctc atcattttcg
     1021 gcatcgtcaa cataacctcg gacagtttct ccgatggagg ccggtatctg gcgccagacg
     1081 cagccattgc gcaggcgcgt aagctgatgg ccgagggggc agatgtgatc gacctcggtc
     1141 cggcatccag caatcccgac gccgcgcctg tttcgtccga cacagaaatc gcgcgtatcg
     1201 cgccggtgct ggacgcgctc aaggcagatg gcattcccgt ctcgctcgac agttatcaac
     1261 ccgcgacgca agcctatgcc ttgtcgcgtg gtgtggccta tctcaatgat attcgcggtt
     1321 ttccagacgc tgcgttctat ccgcaattgg cgaaatcatc tgccaaactc gtcgttatgc
     1381 attcggtgca agacgggcag gcagatcggc gcgaggcacc cgctggcgac atcatggatc
     1441 acattgcggc gttctttgac gcgcgcatcg cggcgctgac gggtgccggt atcaaacgca
     1501 accgccttgt ccttgatccc ggcatggggt tttttctggg ggctgctccc gaaacctcgc
     1561 tctcggtgct ggcgcggttc gatgaattgc ggctgcgctt cgatttgccg gtgcttctgt
     1621 ctgtttcgcg caaatccttt ctgcgcgcgc tcacaggccg tggtccgggg gatgtcgggg
     1681 ccgcgacact cgctgcagag cttgccgccg ccgcaggtgg agctgacttc atccgcacac
     1741 acgagccgcg ccccttgcgc gacgggctgg cggtattggc ggcgctgaaa gaaaccgcaa
     1801 gaattcgtta actgcacatt cgggatattt ctctatattc gcgcttcatc agaaaactga
     1861 aggaacctcc attgaatcga actaatattt tttttggtga atcgcattct gactggttgc
     1921 ctgtcagagg cggagaatct ggtgattttg tttttcgacg tggtgacggg catgccttcg
     1981 cgaaaatcgc acctgcttcc cgccgcggtg agctcgctgg agagcgtgac cgcctcattt
     2041 ggctcaaagg tcgaggtgtg gcttgccccg aggtcatcaa ctggcaggag gaacaggagg
     2101 gtgcatgctt ggtgataacg gcaattccgg gagtaccggc ggctgatctg tctggagcgg
     2161 atttgctcaa agcgtggccg tcaatggggc agcaacttgg cgctgttcac agcctatcgg
     2221 ttgatcaatg tccgtttgag cgcaggctgt cgcgaatgtt cggacgcgcc gttgatgtgg
     2281 tgtcccgcaa tgccgtcaat cccgacttct taccggacga ggacaagagt acgccgcagc
     2341 tcgatctttt ggctcgtgtc gaacgagagc taccggtgcg gctcgaccaa gagcgcaccg
     2401 atatggttgt ttgccatggt gatccctgca tgccgaactt catggtggac cctaaaactc
     2461 ttcaatgcac gggtctgatc gaccttgggc ggctcggaac agcagatcgc tatgccgatt
     2521 tggcactcat gattgctaac gccgaagaga actgggcagc gccagatgaa gcagagcgcg
     2581 ccttcgctgt cctattcaat gtattgggga tcgaagcccc cgaccgcgaa cgccttgcct
     2641 tctatctgcg attggaccct ctgacttggg gttgatgttc atgccgcctg tttttcctgc
     2701 tcattggcac gtttcgcaac ctgttctcat tgcggacacc ttttccagcc tcgtttggaa
     2761 agtttcattg ccagacggga ctcctgcaat cgtcaaggga ttgaaaccta tagaagacat
     2821 tgctgatgaa ctgcgcgggg ccgactatct ggtatggcgc aatgggaggg gagcagtccg
     2881 gttgctcggt cgtgagaaca atctgatgtt gctcgaatat gccggggagc gaatgctctc
     2941 tcacatcgtt gccgagcacg gcgactacca ggcgaccgaa attgcagcgg aactaatggc
     3001 gaagctgtat gccgcatctg aggaacccct gccttctgcc cttctcccga tccgggatcg
     3061 ctttgcagct ttgtttcagc gggcgcgcga tgatcaaaac gcaggttgtc aaactgacta
     3121 cgtccacgcg gcgattatag ccgatcaaat gatgagcaat gcctcggaac tgcgtgggct
     3181 acatggcgat ctgcatcatg aaaacatcat gttctccagt cgcggctggc tggtgataga
     3241 tcccgtcggt ctggtcggtg aagtgggctt tggcgccgcc aatatgttct acgatccggc
     3301 tgacagagac gacctttgtc tcgatcctag acgcattgca cagatggcgg acgcattctc
     3361 tcgtgcgctg gacgtcgatc cgcgtcgcct gctcgaccag gcgtacgctt atgggtgcct
     3421 ttccgcagct tggaacgcgg atggagaaga ggagcaacgc gatctagcta tcgcggccgc
     3481 gatcaagcag gtgcgacaga cgtcatacta gatatcaagc gacttctcct atcccctggg
     3541 aacacatcaa tctcaccgga gaatatcgct ggccaaagcc ttagcgtagg attccgcccc
     3601 ttcccgcaaa cgaccccaaa caggaaacgc agctgaaacg ggaagctcaa cacccactga
     3661 cgcatgggtt gttcaggcag tacttcatca accagcaagg cggcactttc ggccatccgc
     3721 cgcgccccac agctcgggca gaaaccgcga cgcttacagc tgaaagcgac caggtgctcg
     3781 gcgtggcaag actcgcagcg aacccgtaga aagccatgct ccagccgccc gcattggaga
     3841 aattcttcaa attcccgttg cacatagccc ggcaattcct ttccctgctc tgccataagc
     3901 gcagcgaatg ccgggtaata ctcgtcaacg atctgataga gaagggtttg ctcgggtcgg
     3961 tggctctggt aacgaccagt atcccgatcc cggctggccg tcctggccgc cacatgaggc
     4021 atgttccgcg tccttgcaat actgtgttta catacagtct atcgcttagc ggaaagttct
     4081 tttaccctca gccgaaatgc ctgccgttgc tagacattgc cagccagtgc ccgtcactcc
     4141 cactcttaca ttgttcgcag tatctaggta catgttattg cgtgcacctt catgatgtat
     4201 aatgttatta atgacagcag aaagatcgac agaattaata ttcttcgtac ctgggacagt
     4261 tatcgggtgt cggccagtga tgagaccaaa ggatgcagta taagatgaac cactactatt
     4321 atcatggcca ccattaccac caccgttaaa actacctccc gaacttccag agccgctatg
     4381 accatcattg taggggtcat ttggtcccat gtgaccaaaa ccaccgacag taccgctatt
     4441 taactctgta ctcataaaat tatcctcttt gacttttaaa aacagcaaaa actgtattta
     4501 taacaatgtg tttatataca gtattcgaaa tactacgccc gtcaaaacca caccgtcaac
     4561 aggttttttg tgtatttttc acgcctcacg ggcagcctca gaccttttgt gttaaaacag
     4621 taatatgttc tgctgttaca atacggtaca cacaggagac actgtcactt ttatggcatg
     4681 gcacacagtt caagagacac tgaaattaac aggaaagtcg cgctcgcaat tatatcgtga
     4741 catggctaaa ggccttgtca gctatcgcac aggaaaaaat gatcgccggg agttcgagac
     4801 cagtgaactg attcgggcct atggcgagct gcgcacttct gagacaccaa aaaggcacaa
     4861 ggagggacac tccaaatctg tcgttagcca ggcggaaaat gctcagctag acgtcattca
     4921 gcagaaactg gacgctctgc agcagactgt taccctaatg cttgaagaca agatggcgcg
     4981 ggaagcagaa aaccgcctgc gaaatgagga gagggaacaa ctacaggccg aaattagccg
     5041 tctggctgac gcgctggcac aggaaaaaaa gcggggattc tggtcgcggc tgtttcgctc
     5101 cggttcagag taacagtgca ggtgactctg atttaccata acatctgtta tcagcaccgc
     5161 ctgagaggcc ctcagggcgt ttctgacggg aaaccggtaa aacaggcaac aaaccacccg
     5221 aaaacccgcc agaaacgcgc aggctctgtt tttacggcat gcatgagtat gcgcacaagt
     5281 gcatagcgcg gaaattcaca ccattcagcc ggggtaagtc ctgtttccgg cgttcttccc
     5341 atccgaaaac ggtgaacggg gacgcaattt attgcgtggc cgtgaagcgt tgccggcgca
     5401 gccggaaaac ccgctgtcag cacgttcagg aagggggtga tgtacaaatg gcacagagga
     5461 tgaaagtgac gtatgagctg aaggaatgat gtaaaagtga tgtataagtg atgtaaaagt
     5521 gatgtatgaa ctgaaggagc gatgtaattc tgtagtcagg aagaataacc cgttcatgca
     5581 ggcatgaacg atacagtgag gaacgctttt tttgtcacga tctcccctta acctgcgtaa
     5641 atcacccgcc atggttgatt atttttcaac ctcaaaatgg tcatacacct aacgcagccg
     5701 cgattttcat cgcaactgca tgaattaaaa gaaaaaaaag gaatatttcg ttttcacgag
     5761 taatacccgg gtattaaaaa tccactgtaa ttacatgaaa ataaagaaat aaaaggtaat
     5821 accggagtat taccacgtac gcgggcaagc gaaaaagcta taacgcttcc cggccgacag
     5881 gcgacccaaa atccacaggg gcatgcaggt tctcttcagt aacctgcgcc attaaatcaa
     5941 aaaggtcata ttcgccggga agctgcgtat cagtcgaatc cagttgttca tcatattcag
     6001 atggcatggg gtgatatcca gtagctgaga ggttgttagc gggtttcggg gcgcagccct
     6061 gaaccagtca tgtagcgcta gcggagtgta tactggctta ctatgttgcc acgattgcga
     6121 aaatcagtga agtgcttcat gtggcaggag aaaaaaggca gcaccggcgc gtcagcagaa
     6181 tatgcgatac aggagatatt ccgcttcctc gctcactgac tcgctacgct cggtcgtt
//
LOCUS       DADMHM010000478         6010 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.guided.219, whole genome shotgun sequence.
ACCESSION   DADMHM010000478 DADMHM010000000
VERSION     DADMHM010000478.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 6010)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6010)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6010
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.guided.219"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            1..630
                     /locus_tag="JN125_004467"
                     /pseudo
     CDS             1..630
                     /locus_tag="JN125_004467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706235.2"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="RNA ligase RtcB family protein"
     gene            627..1241
                     /locus_tag="JN125_004468"
     CDS             627..1241
                     /locus_tag="JN125_004468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000602105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor H"
                     /protein_id="HAY8873944.1"
                     /translation="MILLQLSSAQGPEECCLAVKKALDRLIKEAARQDVAVTVLETET
                     GRYSDTLRSALVSLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGIGRFTADE
                     QEQSDAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLL
                     IAWKLEQQQQENSAVLKSQRRMFHHQIERGNPRRTFTGMAFIEG"
     gene            complement(1298..2755)
                     /gene="pepD"
                     /locus_tag="JN125_004469"
     CDS             complement(1298..2755)
                     /gene="pepD"
                     /locus_tag="JN125_004469"
                     /EC_number="3.4.13.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008783788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytosol nonspecific dipeptidase"
                     /protein_id="HAY8873945.1"
                     /translation="MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKG
                     FHVERDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDG
                     EWVKARGTTLGADNGIGMASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQSNWL
                     QADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGG
                     EIHVGLGNANKLLVRFLAGHAEELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDAL
                     KSLVNTYQEILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRN
                     SDVAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEA
                     KGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIG
                     PTITGPHSPDEQVHIESVGHYWTLLTELLKEIPAK"
     gene            3016..3474
                     /gene="gpt"
                     /locus_tag="JN125_004470"
     CDS             3016..3474
                     /gene="gpt"
                     /locus_tag="JN125_004470"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HAY8873946.1"
                     /translation="MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGA
                     LLARELGIRHVDTVCISSYDHDNQRELKVLKCAEGDGEGFIVIDDLVDTGGTAVAIRE
                     MYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPISGR"
     gene            3566..4810
                     /gene="frsA"
                     /locus_tag="JN125_004471"
     CDS             3566..4810
                     /gene="frsA"
                     /locus_tag="JN125_004471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_706239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase FrsA"
                     /protein_id="HAY8873947.1"
                     /translation="MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTI
                     PHWYRMINRLMWIWRGIDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWA
                     TQAMVWQQKACAEEDPQLSGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEA
                     AQRLPGTMRQMEFTVPGGAPITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYF
                     APRGIVMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGA
                     NVAVRLAYLESPRLKAVACLGPVVHTLLSDFKCQQQVPEMYLDVLASRLGMHDASDEA
                     LRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLITSSSADGKLLEIPFN
                     PVYRNFDKGLQEITGWIEKRLC"
     gene            4868..5269
                     /locus_tag="JN125_004472"
     CDS             4868..5269
                     /locus_tag="JN125_004472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma factor-binding protein Crl"
                     /protein_id="HAY8873948.1"
                     /translation="MTLPSGHPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNV
                     KPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLRE
                     FHEKLRELLTTLNLKLEPADDFRDEPVKLTA"
     gene            complement(5308..>6010)
                     /locus_tag="JN125_004473"
     CDS             complement(5308..>6010)
                     /locus_tag="JN125_004473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_308295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="porin"
                     /protein_id="HAY8873949.1"
                     /translation="HKTLSVSWSHYPEFGGDSSAQTDNFMTKRASGLATYRNTDFFGV
                     IDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQNLQ
                     SRGTGKRAEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQFDF
                     GLRPSLGYVLSKGKDIEGIGGEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNKLN
                     INNDDIVAIGMTYQF"
BASE COUNT         1458 a         1462 c         1585 g         1505 t
ORIGIN      
        1 acaccccatt ataaggggta cgaataaagt aacggggcag tctattttac agcggcatat
       61 tgcctcgttc tcgcatcatg gtttgcctca aggcagtgac gacgcgctac ggtatattgc
      121 ggaacatgac gatgcgctgg cgtttgcgtg tattaatcgc cagatgatcg ctttgcgcat
      181 aatgcaacaa gttaaggcca cgggaagtcc ggttctggat gtggcgcata actttgttag
      241 cgcgtgtcaa atcggcgatc aacagggctg gttgcatcgt aaaggtgcca cgccggatga
      301 caacggtctg gtgattactc ctggattgta cagcctgttg cgaacgaaaa aacgctccac
      361 tcgctggcgc atggggcagg gcgtaaatgg gggcgcaccg agtgtaaatg gcgtctggca
      421 gcgaaataca cggtgacgca actctcgcgg actgaacttg gcagtcggat aatttgtcgc
      481 gataaacaac tcatctttga agaagcgcca caagcctata aatcggctga aagcgtggtg
      541 caatgtctgg tgcaggccgg tttaattatt cctgtcgcgc ggctgcgtcc ggtgctaacg
      601 ctcaaaaaca gtggagggaa aaaaggatga tcttgctaca actctcctca gcgcaggggc
      661 cggaagaatg ttgtctcgca gtgaaaaagg cgctggacag gctaattaaa gaagctgccc
      721 gacaagacgt cgcggtaacg gtgttggaaa cagaaacggg ccgctactct gacacgctgc
      781 gttcagctct ggtttctctg gatggcgata acgcatgggc attaagcgaa agctggtgtg
      841 gcactattca gtggatttgt ccgagtccgt atcggcctca tcatgggcgc aaaaactggt
      901 ttctgggcat tgggcgtttt accgctgatg agcaggagca atccgatgcg atccggtatg
      961 agacgctgcg ttcgtcgggg ccgggcggtc aacatgtcaa taaaaccgac tcggcggtac
     1021 gcgccacgca tttggcatcc ggtattagcg tgaaggttca gtcagagcgt agtcagcatg
     1081 ctaacaagcg gctggcacga ttgctgattg cctggaagct ggagcagcag caacaggaaa
     1141 atagcgcggt gctgaaatcg cagcggcgaa tgttccatca ccagattgaa cgtggcaacc
     1201 cgagacggac atttacaggg atggctttta tcgaaggata atgaaggatg aaactgccgg
     1261 aaggcgatta aacgccatcc ggcagcaaat caaataatta cttcgccgga atttctttca
     1321 gcagttcagt cagcagtgtc cagtaatgac ctacgctttc gatgtgaact tgctcatccg
     1381 gagagtgtgg accggtgata gttggcccga tagaaaccat gtccatttcc ggatacggtt
     1441 ttttgaacag accacattcc aggcccgcgt ggataatctg gatgttcggc gtcttgttga
     1501 acaggcgctg ataggtttca cgtaccagat gcatcaccgg agaattagcg tccggctgcc
     1561 agccaggata tgcgcctttc gcttcggttt tcgcgccagc cagtttaccc agcgaatcca
     1621 gcatgctcac cacgtagtct ttaccgctgt cgatcagtga acggatcagg cagtgaattt
     1681 ctacgttatt gtcagtcatg gtcaccacac cgacgttcag ggaggtttca accacacctt
     1741 tggctacatc ggagttgcgg atcacaccgt tcggggtggc gttcagcaga cgaataaagg
     1801 tatcgcgaga tttcgcaatc agggcagctt tatcgttcgc tacagagtcc agcaacaagg
     1861 ccagattttt ctctttctct gccagctcgt ttttcaggat ctcctgatag gtattcacca
     1921 gagatttcag tgcgtcgact ttatcagctg cgacagcaat ggtcgcaaag gcttcacgcg
     1981 ggatggcgtt acgcagtgtg ccgccgttga aatcgataag gcgcaggtcc agttcttctg
     2041 catgacccgc caggaagcgc accagcagtt tgttggcatt acccaggcca acgtggattt
     2101 caccgccgga gtgaccgcct ttcagacctt ttaaggttaa cttgaaggtt tcaaaaccag
     2161 ctggaaccgc ttcacgatct aaatgcaggt tggaggtgaa gtcgataccc cccgcacaac
     2221 ccatgtagat ttcaccttct tcttcggagt cggtgttaat cagaatatca gcctgcaacc
     2281 agttgctctg taagccaaaa gcaccgtcca taccggcttc ttcggtcatg gtcagcagca
     2341 cttccagcgg accgtgaacc acgttttcgt cagccagaac cgccagtgca gaggccatac
     2401 caatgccgtt atccgcaccc agcgtggtgc cgcgcgcttt aacccattcg ccatcaatat
     2461 aaggctggat aggatctttc gtgaagtcat gcacggtgtc gttatttttc tgcggcacca
     2521 tatcgaggtg ggcctgtaag acgaccggtt tacgattttc catacctgcg gtagcaggtt
     2581 tacgaatcag gatattacct acctgatcgc gttcgacatg gaaacctttc tcttttgccc
     2641 aaccaacaat gtattcagcg agttgctctt catgatagga cgggtgagga atagaacaga
     2701 ttttggcaaa aatatcccac agcggctgtg gagataattg agacagttca gacacgttaa
     2761 gtctccttgt cgatcacccg caaaacagta ttgcaggtca cagggttagc agaaaatgtt
     2821 gtcaacacaa gacaggcttg cgagatatgt ttgagaatac cactttatcc cgcgtcaggg
     2881 agaggcagtg cgtaaaaaga cgcggactca tgtgaaatac tggtttttag tgcgccagat
     2941 ctctataatc tcgcgcaacc tattttcccc tcgaacactt tttaagccgt agataaacag
     3001 gctgggacac ttcacatgag cgaaaaatac atcgtcacct gggacatgtt gcagatccat
     3061 gcacgtaaac tcgcaagccg actgatgcct tctgaacaat ggaaaggcat tattgccgta
     3121 agccgtggcg gtctggtacc gggtgcgtta ctggcgcgtg aactgggtat tcgtcatgtc
     3181 gataccgttt gtatttccag ctacgatcac gacaaccagc gagagcttaa agtgctgaaa
     3241 tgcgcagaag gcgatggcga aggcttcata gttattgatg acctggtgga taccggtggt
     3301 actgctgttg cgattcgtga aatgtatcca aaagcgcact ttgtcaccat cttcgcaaaa
     3361 ccggctggtc gtccgctggt tgatgactat gttgttgata ttccgcaaga tacctggatc
     3421 gaacagccgt gggatatggg cgtcgtattc gtcccgccaa tctccggtcg ctaatctttt
     3481 caacgcctgg cactgccggg cgttgttctt tttaacttca ggcaggttac aatagtttcc
     3541 agtaagtatt ctggaggctg catccatgac acaggcaaac ctgagcgaaa ccctgttcaa
     3601 accccgcttt aaacatcctg aaacctcgac gctagtccgc cgctttaatc acggcgcaca
     3661 accgcctgtg cagtcggctc ttgatggtaa aaccatccct cactggtatc gcatgattaa
     3721 ccgtctgatg tggatctggc gcggtattga cccacgtgaa atcctcgacg tccaggcacg
     3781 tattgtgatg agcgatgctg aacgtaccga cgatgattta tacgatactg tgattggcta
     3841 ccgtggtggc aactggattt atgagtgggc cacccaggcg atggtgtggc aacaaaaagc
     3901 ctgtgcggaa gaagatccgc aactcagtgg tcgacactgg ctgcatgcgg ctacgttgta
     3961 caacattgcc gcctatcctc atctgaaagg agatgacctg gccgagcaag cgcaggcttt
     4021 atcaaaccgc gcctatgaag aggccgccca gcgtctgccg ggcacgatgc ggcagatgga
     4081 gtttaccgta cccggcggtg cgcccatcac cggctttttg catatgccga aaggcgatgg
     4141 cccgttcccg acagtattaa tgtgtggtgg tctggatgcg atgcagacgg actattacag
     4201 cctgtatgaa cgttattttg cgccgcgcgg cattgtgatg ctgactattg atatgccgtc
     4261 ggtgggcttt tcttcaaaat ggaagctcac ccaggactcc agcctgttgc atcagcacgt
     4321 cttaaaggcg ctgcctaacg taccgtgggt ggatcacact cgcgtcgcgg cctttggttt
     4381 ccgtttcggc gctaacgttg ccgtgcgtct ggcatatctt gaatcgccgc gtctgaaagc
     4441 ggttgcctgt cttggtccgg tagttcatac cctgttgagt gattttaagt gccagcaaca
     4501 ggtgccggaa atgtatcttg acgttctggc gagtcgtttg gggatgcatg atgcttccga
     4561 cgaagcgtta cgcgtggagc tgaatcgcta ttcattaaaa gtgcaaggat tgctgggacg
     4621 tcgctgccca acgccaatgt tatcaggcta ctggaagaac gatccgttca gcccggaaga
     4681 ggactcacgc ttaatcacct catcatctgc tgacggtaaa ttattagaga tcccatttaa
     4741 cccggtgtat cggaattttg acaaaggtct tcaggaaatc accggctgga tcgaaaaacg
     4801 cttgtgttaa aaatttgcta aattttgcca atttggtaaa acagttgcat cacaacagga
     4861 gatagcaatg acgttaccga gtggacaccc gaagagcaga ttgatcaaaa aatttaccgc
     4921 actaggcccg tatattcgtg aaggtaagtg cgaagataat cgattctttt tcgattgtct
     4981 ggctgtatgc gtcaacgtga aaccggcacc ggaagtgcgt gaattctggg gctggtggat
     5041 ggagctggaa gcgcaggaat cccgttttac ctacagctac cagtttggtc tgttcgataa
     5101 agcaggcgac tggaagagtg ttcctgtaaa agatactgaa gtggttgaac gactggagca
     5161 caccctgcgt gagtttcacg agaagctgcg tgaactgctg acgacgctga atctgaagct
     5221 ggaaccggcg gatgattttc gtgacgagcc ggtgaagtta acggcgtgag tgaaatgtgc
     5281 cggatgcatc acatccggca atatctatta aaactgatac gtcatcccaa tcgcgacaat
     5341 atcatcatta ttaatattca atttgttatc gctatccagt tggttgattt tataatcaac
     5401 aaatgctgac atatttttgt tgaaataata cgtagcaccg acgtcgatat aattaaccag
     5461 atcttcacca ccgatgccct caatatcttt ccctttcgat aagacataac ccagcgatgg
     5521 acgcagacca aagtcaaact ggtattgagc gaccgcttca aagttctgtg tcttattggc
     5581 aaagccgcca gttattggcg tcattttgcg agtttcagaa tagaaagttg ccagataaat
     5641 attattggca tcgtatttca gacctgttgc ccatgcttct gcacgcttgc ctgtgccacg
     5701 gctttgcagg ttctgctcgt tggtgcgatc tgagttggta taggccccac taatggcgaa
     5761 atcgctgccg ccaaagtcat atgtcaatga cgtgccgaag ccatcgccgt tttgcttttt
     5821 aacgtcgcgg ttttcgtttt tcccttgata ttgcagggtt aagttcaggc catcgataac
     5881 gccgaagaag tcggtgttcc gatacgtcgc cagaccgctg gcgcgtttgg tcataaagtt
     5941 gtcggtctgc gccgaggagt cgccaccaaa ttccgggtaa tgactccaac ttactgatag
     6001 tgttttatgt
//
LOCUS       DADMHM010000479         1537 bp    DNA     linear   BCT 06-MAR-2021
DEFINITION  TPA_asm: Shigella boydii strain H113540504
            SAMEA1570804-rid11410683.guided.354, whole genome shotgun sequence.
ACCESSION   DADMHM010000479 DADMHM010000000
VERSION     DADMHM010000479.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA1570804
            Sequence Read Archive: ERR205884
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Shigella boydii
  ORGANISM  Shigella boydii
            Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Shigella.
REFERENCE   1  (bases 1 to 1537)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1537)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (26-JAN-2021) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 26-JAN-2021
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT000941112.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT000941112.1
            Genome Coverage       :: 195x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 01/27/2021 04:47:34
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2020-02-06.build4373
            Genes (total)                     :: 4,475
            CDSs (total)                      :: 4,393
            Genes (coding)                    :: 4,039
            CDSs (with protein)               :: 4,039
            Genes (RNA)                       :: 82
            rRNAs                             :: 1, 2 (16S, 23S)
            partial rRNAs                     :: 1, 2 (16S, 23S)
            tRNAs                             :: 72
            ncRNAs                            :: 7
            Pseudo Genes (total)              :: 354
            CDSs (without protein)            :: 354
            Pseudo Genes (ambiguous residues) :: 0 of 354
            Pseudo Genes (frameshifted)       :: 185 of 354
            Pseudo Genes (incomplete)         :: 94 of 354
            Pseudo Genes (internal stop)      :: 110 of 354
            Pseudo Genes (multiple problems)  :: 33 of 354
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1537
                     /organism="Shigella boydii"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA1570804-rid11410683.guided.354"
                     /strain="H113540504"
                     /db_xref="taxon:621"
     gene            <1..303
                     /locus_tag="JN125_004474"
     CDS             <1..303
                     /locus_tag="JN125_004474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HAY8873950.1"
                     /translation="RQKAASSLTLQQCPDGDMGQMVVTILSAVAQAERRRILERTNEG
                     RQEAKLKGIKFGRRRTVDRNVVLTLHQKGTGATEIAHQLSIARSTVYKILEDERAS"
     gene            486..1346
                     /locus_tag="JN125_004475"
     CDS             486..1346
                     /locus_tag="JN125_004475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032489893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class A broad-spectrum beta-lactamase TEM-1"
                     /protein_id="HAY8873951.1"
                     /translation="MSIQHFRVALIPFFAAFCLPVFAHPETLVKVKDAEDQLGARVGY
                     IELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVE
                     YSPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRL
                     DRWEPELNEAIPNDERDTTMPAAMATTLRKLLTGELLTLASRQQLIDWMEADKVAGPL
                     LRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTGSQATMDERNRQIA
                     EIGASLIKHW"
BASE COUNT          430 a          339 c          374 g          394 t
ORIGIN      
        1 agacaaaagg ctgcctcatc gctaactttg caacagtgcc ccgacggtga tatggggcaa
       61 atggtggtca ccatcctgtc ggctgtggca caggctgaac gccggaggat cctagaacgc
      121 acgaatgagg gccgacagga agcaaagctg aaaggaatca aatttggccg caggcgtacc
      181 gtggacagga acgtcgtgct gacgcttcat cagaagggca ctggtgcaac ggaaattgct
      241 catcagctca gtattgcccg ctccacggtt tataaaattc ttgaagacga aagggcctcg
      301 tgatacgcct atttttatag gttaatgtca tgataataat ggtttcttag acgtcaggtg
      361 gcacttttcg gggaaatgtg cgcggaaccc ctatttgttt atttttctaa atacattcaa
      421 atatgtatcc gctcatgaga caataaccct ggtaaatgct tcaataatat tgaaaaagga
      481 agagtatgag tattcaacat tttcgtgtcg cccttattcc cttttttgcg gcattttgcc
      541 ttcctgtttt tgctcaccca gaaacgctgg tgaaagtaaa agatgctgaa gatcagttgg
      601 gtgcacgagt gggttacatc gaactggatc tcaacagcgg taagatcctt gagagttttc
      661 gccccgaaga acgttttcca atgatgagca cttttaaagt tctgctatgt ggtgcggtat
      721 tatcccgtgt tgacgccggg caagagcaac tcggtcgccg catacactat tctcagaatg
      781 acttggttga gtactcacca gtcacagaaa agcatcttac ggatggcatg acagtaagag
      841 aattatgcag tgctgccata accatgagtg ataacactgc tgccaactta cttctgacaa
      901 cgatcggagg accgaaggag ctaaccgctt ttttgcacaa catgggggat catgtaactc
      961 gccttgatcg ttgggaaccg gagctgaatg aagccatacc aaacgacgag cgtgatacca
     1021 cgatgcctgc agcaatggca acaacgttgc gcaaactatt aactggcgaa ctacttactc
     1081 tagcttcccg gcaacaatta atagactgga tggaggcgga taaagttgca ggaccacttc
     1141 tgcgctcggc ccttccggct ggctggttta ttgctgataa atctggagcc ggtgagcgtg
     1201 ggtctcgcgg tatcattgca gcactggggc cagatggtaa gccctcccgt atcgtagtta
     1261 tctacacgac ggggagtcag gcaactatgg atgaacgaaa tagacagatc gctgagatag
     1321 gtgcctcact gattaagcat tggtaactgt cagaccaagt ttactcatat atactttaga
     1381 ttgatttaaa acttcatttt taatttaaaa ggatctaggt gaagatcctt tttgataatc
     1441 tcatgaccaa aatcccttaa cgtgagtttt cgttccactg agcgtcagac cccgataaca
     1501 agataacaag atgacaagat aacaagatga caagata
//
